Amniota	ANCESTRAL SPECIES	23	ENSGT00940000158081 #9	ENSGT00940000167763	ENSGT00410000025695.b #10	ENSGT00390000002913 #11	ENSGT00940000158163 #12	ENSGT00390000000672.a.a #13	ENSGT00940000160699 #14	ENSGT00940000165199	ENSGT00390000014856 #15	ENSGT00940000160753 #16	ENSGT00390000017748 #17	ENSGT00940000158649 #18	ENSGT00940000160926 #19	ENSGT00390000012913.a #20	ENSGT00410000025695.a #21	ENSGT00390000012198 #22	ENSGT01060000249150	ENSGT00390000004097.a #23	ENSGT00940000160464 #24	ENSGT00390000000719 #25	ENSGT00960000189525	ENSGT00390000007227.b #26	ENSGT00390000008152.B.a #27	ENSGT00390000006166	ENSGT00390000016851	ENSGT00940000157019	ENSGT00390000007029	ENSGT00390000012240	ENSGT00390000007336	ENSGT00510000049316	ENSGT00390000016934
Mammalia	ANCESTRAL SPECIES	39	ENSGT00940000158081 #9	ENSGT00940000167763	ENSGT00410000025695.b #10	ENSGT00390000002913 #11	ENSGT00940000158163 #12	ENSGT00390000000672.a.a #13	ENSGT00940000160699 #14	ENSGT00940000165199	ENSGT00390000014856 #15	ENSGT00940000160753 #16	ENSGT00390000017748 #17	ENSGT00940000158649 #18	ENSGT00940000160926 #19	ENSGT00390000012913.a #20	ENSGT00410000025695.a #21	ENSGT00390000012198 #22	ENSGT00390000004097.a #23	ENSGT00940000160464 #24	ENSGT00390000000719 #25	ENSGT00960000189525	ENSGT00390000007227.b #26	ENSGT00390000008152.B.a #27	ENSGT00390000006166	ENSGT00390000016851	ENSGT00940000157019	ENSGT00390000007029	ENSGT00390000012240	ENSGT00390000007336	ENSGT00510000049316	ENSGT00390000016934	ENSGT00530000063974.a
Theria	ANCESTRAL SPECIES	31	ENSGT00730000111231 #8	ENSGT00940000158081 #9	ENSGT00940000167763	ENSGT00410000025695.b #10	ENSGT00390000002913 #11	ENSGT00940000158163 #12	ENSGT00390000000672.a.a #13	ENSGT00940000160699 #14	ENSGT00390000014856 #15	ENSGT00940000160753 #16	ENSGT00390000017748 #17	ENSGT00940000158649 #18	ENSGT00940000160926 #19	ENSGT00390000012913.a #20	ENSGT00410000025695.a #21	ENSGT00390000012198 #22	ENSGT00390000004097.a #23	ENSGT00940000160464 #24	ENSGT00390000000719 #25	ENSGT00960000189525	ENSGT00390000007227.b #26	ENSGT00390000008152.B.a #27
Eutheria	ANCESTRAL SPECIES	24	ENSGT00390000003478 #7	ENSGT00730000111231 #8	ENSGT00940000158081 #9	ENSGT00410000025695.b #10	ENSGT00390000002913 #11	ENSGT00940000158163 #12	ENSGT00390000000672.a.a #13	ENSGT00940000160699 #14	ENSGT00390000014856 #15	ENSGT00940000160753 #16	ENSGT00390000017748 #17	ENSGT00940000158649 #18	ENSGT00940000160926 #19	ENSGT00390000012913.a #20	ENSGT00410000025695.a #21	ENSGT00390000012198 #22	ENSGT00390000004097.a #23	ENSGT00940000160464 #24	ENSGT00390000000719 #25	ENSGT00960000189525	ENSGT00390000007227.b #26	ENSGT00390000008152.B.a #27	ENSGT00940000162643 #28	ENSGT01050000244941.B.c	ENSGT00950000183110.a	ENSGT00550000075064
Boreoeutheria	ANCESTRAL SPECIES	18	ENSGT00390000003478 #7	ENSGT00730000111231 #8	ENSGT00940000158081 #9	ENSGT00410000025695.b #10	ENSGT00390000002913 #11	ENSGT00940000158163 #12	ENSGT00390000000672.a.a #13	ENSGT00940000160699 #14	ENSGT00390000014856 #15	ENSGT00940000160753 #16	ENSGT00390000017748 #17	ENSGT00940000158649 #18	ENSGT00940000160926 #19	ENSGT00390000012913.a #20	ENSGT00410000025695.a #21	ENSGT00390000012198 #22	ENSGT00390000004097.a #23	ENSGT01090000261752	ENSGT00940000160464 #24	ENSGT00390000000719 #25	ENSGT00960000189525	ENSGT00390000007227.b #26	ENSGT00390000008152.B.a #27	ENSGT00940000162643 #28	ENSGT01050000244941.B.c	ENSGT00950000183110.a	ENSGT00550000075064
Euarchontoglires	ANCESTRAL SPECIES	18	ENSGT00390000003478 #7	ENSGT00730000111231 #8	ENSGT00940000158081 #9	ENSGT00410000025695.b #10	ENSGT00390000002913 #11	ENSGT00940000158163 #12	ENSGT00390000000672.a.a #13	ENSGT00940000160699 #14	ENSGT00390000014856 #15	ENSGT00940000160753 #16	ENSGT00390000017748 #17	ENSGT00940000158649 #18	ENSGT00940000160926 #19	ENSGT00390000012913.a #20	ENSGT00410000025695.a #21	ENSGT00390000012198 #22	ENSGT00390000004097.a #23	ENSGT01090000261752	ENSGT00940000160464 #24	ENSGT00390000000719 #25	ENSGT00390000007227.b #26	ENSGT00390000008152.B.a #27	ENSGT00940000162643 #28	ENSGT01050000244941.B.c	ENSGT00950000183110.a	ENSGT00550000075064
Euarchontoglires_A	ANCESTRAL SPECIES	20	ENSGT00390000003478 #7	ENSGT00730000111231 #8	ENSGT00940000158081 #9	ENSGT00410000025695.b #10	ENSGT00390000002913 #11	ENSGT00940000158163 #12	ENSGT00390000000672.a.a #13	ENSGT00940000160699 #14	ENSGT00390000014856 #15	ENSGT00940000160753 #16	ENSGT00390000017748 #17	ENSGT00940000158649 #18	ENSGT00940000160926 #19	ENSGT00390000012913.a #20	ENSGT00410000025695.a #21	ENSGT00390000012198 #22	ENSGT00390000004097.a #23	ENSGT01090000261752	ENSGT00940000160464 #24	ENSGT00390000000719 #25	ENSGT00390000007227.b #26	ENSGT00390000008152.B.a #27	ENSGT00940000162643 #28	ENSGT01050000244941.B.c	ENSGT00950000183110.a	ENSGT00550000075064
Glires	ANCESTRAL SPECIES	21	ENSGT00390000003478 #7	ENSGT00730000111231 #8	ENSGT00940000158081 #9	ENSGT00410000025695.b #10	ENSGT00390000002913 #11	ENSGT00940000158163 #12	ENSGT00390000000672.a.a #13	ENSGT00940000160699 #14	ENSGT00390000014856 #15	ENSGT00940000160753 #16	ENSGT00390000017748 #17	ENSGT00940000158649 #18	ENSGT00940000160926 #19	ENSGT00390000012913.a #20	ENSGT00410000025695.a #21	ENSGT00390000012198 #22	ENSGT00390000004097.a #23	ENSGT01090000261752	ENSGT00940000160464 #24	ENSGT00390000000719 #25	ENSGT00390000007227.b #26	ENSGT00390000008152.B.a #27	ENSGT00940000162643 #28	ENSGT01050000244941.B.c	ENSGT00950000183110.a	ENSGT00550000075064
Rodentia	ANCESTRAL SPECIES	17	ENSGT00390000003478 #7	ENSGT00730000111231 #8	ENSGT00940000158081 #9	ENSGT00410000025695.b #10	ENSGT00390000002913 #11	ENSGT00940000158163 #12	ENSGT00390000000672.a.a #13	ENSGT00940000160699 #14	ENSGT00390000014856 #15	ENSGT00940000160753 #16	ENSGT00390000017748 #17	ENSGT00940000158649 #18	ENSGT00940000160926 #19	ENSGT00390000012913.a #20	ENSGT00410000025695.a #21	ENSGT00390000012198 #22	ENSGT00390000004097.a #23	ENSGT00940000160464 #24	ENSGT00390000000719 #25	ENSGT00390000007227.b #26	ENSGT00390000008152.B.a #27	ENSGT00940000162643 #28	ENSGT01050000244941.B.c	ENSGT00950000183110.a	ENSGT00550000075064
Rodentia_B	ANCESTRAL SPECIES	37	ENSGT00390000003478 #7	ENSGT00730000111231 #8	ENSGT00940000158081 #9	ENSGT00410000025695.b #10	ENSGT00390000002913 #11	ENSGT00940000158163 #12	ENSGT00390000000672.a.a #13	ENSGT00940000160699 #14	ENSGT00390000014856 #15	ENSGT00940000160753 #16	ENSGT00390000017748 #17	ENSGT00940000158649 #18	ENSGT00940000160926 #19	ENSGT00390000012913.a #20	ENSGT00410000025695.a #21	ENSGT00390000012198 #22	ENSGT00390000004097.a #23	ENSGT00940000160464 #24	ENSGT00390000000719 #25	ENSGT00390000007227.b #26	ENSGT00390000008152.B.a #27	ENSGT00940000162643 #28	ENSGT01050000244941.B.c	ENSGT00950000183110.a	ENSGT00550000075064
Myomorpha	ANCESTRAL SPECIES	43	ENSGT00390000003478 #7	ENSGT00730000111231 #8	ENSGT00940000158081 #9	ENSGT00410000025695.b #10	ENSGT00390000002913 #11	ENSGT00940000158163 #12	ENSGT00390000000672.a.a #13	ENSGT00940000160699 #14	ENSGT00390000014856 #15	ENSGT00940000160753 #16	ENSGT00390000017748 #17	ENSGT00940000158649 #18	ENSGT00940000160926 #19	ENSGT00390000012913.a #20	ENSGT00410000025695.a #21	ENSGT00390000012198 #22	ENSGT00390000004097.a #23	ENSGT00940000160464 #24	ENSGT00390000000719 #25	ENSGT00390000007227.b #26	ENSGT00390000008152.B.a #27	ENSGT00940000162643 #28	ENSGT01050000244941.B.c	ENSGT00950000183110.a	ENSGT00550000075064
Muroidea	ANCESTRAL SPECIES	47	ENSGT00390000003478 #7	ENSGT00730000111231 #8	ENSGT00940000158081 #9	ENSGT00410000025695.b #10	ENSGT00390000002913 #11	ENSGT00940000158163 #12	ENSGT00390000000672.a.a #13	ENSGT00940000160699 #14	ENSGT00390000014856 #15	ENSGT00940000160753 #16	ENSGT00390000017748 #17	ENSGT00940000158649 #18	ENSGT00940000160926 #19	ENSGT00390000012913.a #20	ENSGT00410000025695.a #21	ENSGT00390000012198 #22	ENSGT00390000004097.a #23	ENSGT00940000160464 #24	ENSGT00390000000719 #25	ENSGT00390000007227.b #26	ENSGT00390000008152.B.a #27	ENSGT00940000162643 #28	ENSGT01050000244941.B.c	ENSGT00950000183110.a	ENSGT00550000075064	ENSGT00950000182755.b.a.a.b.a.a.k.a.a	ENSGT00950000182755.b.a.a.b.a.a.k.a.b.b	ENSGT00950000182755.b.a.a.b.a.a.k.a.b.a
Muroidea_A	ANCESTRAL SPECIES	28	ENSGT00390000003478 #7	ENSGT00730000111231 #8	ENSGT00940000158081 #9	ENSGT00410000025695.b #10	ENSGT00390000002913 #11	ENSGT00940000158163 #12	ENSGT00390000000672.a.a #13	ENSGT00940000160699 #14	ENSGT00390000014856 #15	ENSGT00940000160753 #16	ENSGT00390000017748 #17	ENSGT00940000158649 #18	ENSGT00940000160926 #19	ENSGT00390000012913.a #20	ENSGT00410000025695.a #21	ENSGT00390000012198 #22	ENSGT00390000004097.a #23	ENSGT00940000160464 #24	ENSGT00390000000719 #25	ENSGT00390000007227.b #26	ENSGT00390000008152.B.a #27	ENSGT00940000162643 #28	ENSGT01050000244941.B.c	ENSGT00950000183110.a	ENSGT00550000075064	ENSGT00950000182755.b.a.a.b.a.a.k.a.a	ENSGT00950000182755.b.a.a.b.a.a.k.b.a	ENSGT00950000182755.b.a.a.b.a.a.k.a.b.b	ENSGT00950000182755.b.a.a.b.a.a.k.b.b	ENSGT00950000182755.b.a.a.b.a.a.k.a.b.a
Murinae	ANCESTRAL SPECIES	23	ENSGT00390000003478 #7	ENSGT00730000111231 #8	ENSGT00940000158081 #9	ENSGT00410000025695.b #10	ENSGT00390000002913 #11	ENSGT00940000158163 #12	ENSGT00390000000672.a.a #13	ENSGT00940000160699 #14	ENSGT00390000014856 #15	ENSGT00940000160753 #16	ENSGT00390000017748 #17	ENSGT00940000158649 #18	ENSGT00940000160926 #19	ENSGT00390000012913.a #20	ENSGT00410000025695.a #21	ENSGT00390000012198 #22	ENSGT00390000004097.a #23	ENSGT00940000160464 #24	ENSGT00390000000719 #25	ENSGT00390000007227.b #26	ENSGT00390000008152.B.a #27	ENSGT00940000162643 #28	ENSGT01050000244941.B.c	ENSGT00950000183110.a	ENSGT00550000075064	ENSGT00950000182755.b.a.a.b.a.a.k.a.a	ENSGT00950000182755.b.a.a.b.a.a.k.b.a	ENSGT00950000182755.b.a.a.b.a.a.k.a.b.b	ENSGT00950000182755.b.a.a.b.a.a.k.b.b	ENSGT00950000182755.b.a.a.b.a.a.k.a.b.a	ENSGT00940000154078.a.b
Mus	ANCESTRAL SPECIES	6	ENSGT00390000003478 #7	ENSGT00730000111231 #8	ENSGT00940000158081 #9	ENSGT00410000025695.b #10	ENSGT00390000002913 #11	ENSGT00940000158163 #12	ENSGT00390000000672.a.a #13	ENSGT00940000160699 #14	ENSGT00390000014856 #15	ENSGT00940000160753 #16	ENSGT00390000017748 #17	ENSGT00940000158649 #18	ENSGT00940000160926 #19	ENSGT00390000012913.a #20	ENSGT00410000025695.a #21	ENSGT00390000012198 #22	ENSGT00390000004097.a #23	ENSGT00940000160464 #24	ENSGT00390000000719 #25	ENSGT00390000007227.b #26	ENSGT00390000008152.B.a #27	ENSGT00940000162643 #28	ENSGT01050000244941.B.c	ENSGT00950000183110.a	ENSGT00550000075064	ENSGT00950000182755.b.a.a.b.a.a.k.a.a	ENSGT00940000164244.b	ENSGT00950000182755.b.a.a.b.a.a.k.b.a	ENSGT00950000182755.b.a.a.b.a.a.k.a.b.b	ENSGT00950000182755.b.a.a.b.a.a.k.b.b	ENSGT00950000182755.b.a.a.b.a.a.k.a.b.a
Mus_A	ANCESTRAL SPECIES	8	ENSGT00390000003478 #7	ENSGT00730000111231 #8	ENSGT00940000158081 #9	ENSGT00410000025695.b #10	ENSGT00390000002913 #11	ENSGT00940000158163 #12	ENSGT00390000000672.a.a #13	ENSGT00940000160699 #14	ENSGT00390000014856 #15	ENSGT00940000160753 #16	ENSGT00390000017748 #17	ENSGT00940000158649 #18	ENSGT00940000160926 #19	ENSGT00390000012913.a #20	ENSGT00410000025695.a #21	ENSGT00390000012198 #22	ENSGT00390000004097.a #23	ENSGT00940000160464 #24	ENSGT00390000000719 #25	ENSGT00390000007227.b #26	ENSGT00390000008152.B.a #27	ENSGT00940000162643 #28	ENSGT01050000244941.B.c	ENSGT00950000183110.a	ENSGT00550000075064	ENSGT00950000182755.b.a.a.b.a.a.k.a.a	ENSGT00940000164244.b	ENSGT00950000182755.b.a.a.b.a.a.k.b.a	ENSGT00950000182755.b.a.a.b.a.a.k.a.b.b	ENSGT00950000182755.b.a.a.b.a.a.k.b.b	ENSGT00950000182755.b.a.a.b.a.a.k.a.b.a
Mus_B	ANCESTRAL SPECIES	6	ENSGT00390000003478 #7	ENSGT00730000111231 #8	ENSGT00940000158081 #9	ENSGT00410000025695.b #10	ENSGT00390000002913 #11	ENSGT00940000158163 #12	ENSGT00390000000672.a.a #13	ENSGT00940000160699 #14	ENSGT00390000014856 #15	ENSGT00940000160753 #16	ENSGT00390000017748 #17	ENSGT00940000158649 #18	ENSGT00940000160926 #19	ENSGT00390000012913.a #20	ENSGT00410000025695.a #21	ENSGT00390000012198 #22	ENSGT00390000004097.a #23	ENSGT00940000160464 #24	ENSGT00390000000719 #25	ENSGT00390000007227.b #26	ENSGT00390000008152.B.a #27	ENSGT00940000162643 #28	ENSGT01050000244941.B.c	ENSGT00950000183110.a	ENSGT00550000075064	ENSGT00950000182755.b.a.a.b.a.a.k.a.a	ENSGT00940000164244.b	ENSGT00950000182755.b.a.a.b.a.a.k.b.a	ENSGT00950000182755.b.a.a.b.a.a.k.a.b.b	ENSGT00950000182755.b.a.a.b.a.a.k.b.b	ENSGT00950000182755.b.a.a.b.a.a.k.a.b.a
Mus_C	ANCESTRAL SPECIES	5	ENSGT00390000003478 #7	ENSGT00730000111231 #8	ENSGT00940000158081 #9	ENSGT00410000025695.b #10	ENSGT00390000002913 #11	ENSGT00940000158163 #12	ENSGT00390000000672.a.a #13	ENSGT00940000160699 #14	ENSGT00390000014856 #15	ENSGT00940000160753 #16	ENSGT00390000017748 #17	ENSGT00940000158649 #18	ENSGT00940000160926 #19	ENSGT00390000012913.a #20	ENSGT00410000025695.a #21	ENSGT00390000012198 #22	ENSGT00390000004097.a #23	ENSGT00940000160464 #24	ENSGT00390000000719 #25	ENSGT00390000007227.b #26	ENSGT00390000008152.B.a #27	ENSGT00940000162643 #28	ENSGT01050000244941.B.c	ENSGT00950000183110.a	ENSGT00550000075064	ENSGT00950000182755.b.a.a.b.a.a.k.a.a	ENSGT00940000164244.b	ENSGT00950000182755.b.a.a.b.a.a.k.b.a	ENSGT00950000182755.b.a.a.b.a.a.k.a.b.b	ENSGT00950000182755.b.a.a.b.a.a.k.b.b	ENSGT00950000182755.b.a.a.b.a.a.k.a.b.a
Steppe mouse	MODERN SPECIES	2734	Cope (ENSMSIG00000032053) #7	Ddx49 (ENSMSIG00000032052) #8	Homer3 (ENSMSIG00000032051) #9	Sugp2 (ENSMSIG00000032050) #10	Armc6 (ENSMSIG00000032049) #11	Slc25a42 (ENSMSIG00000032048) #12	Tmem161a (ENSMSIG00000032047) #13	ENSMSIG00000032046 #14	Borcs8 (ENSMSIG00000032045) #15	Rfxank (ENSMSIG00000032044) #16	Nr2c2ap (ENSMSIG00000032043) #17	Ncan (ENSMSIG00000032040) #18	Hapln4 (ENSMSIG00000032039) #19	Tm6sf2 (ENSMSIG00000032038) #20	Sugp1 (ENSMSIG00000032037) #21	Mau2 (ENSMSIG00000032036) #22	Gatad2a (ENSMSIG00000032035) #23	Tssk6 (ENSMSIG00000032034) #24	Ndufa13 (ENSMSIG00000032033) #25	Yjefn3 (ENSMSIG00000032032) #26	Cilp2 (ENSMSIG00000032031) #27	Pbx4 (ENSMSIG00000032030) #28
spretus	MODERN SPECIES	17	Cope (MGP_SPRETEiJ_G0032258) #7	Ddx49 (MGP_SPRETEiJ_G0032257) #8	Homer3 (MGP_SPRETEiJ_G0032256) #9	Sugp2 (MGP_SPRETEiJ_G0032255) #10	Armc6 (MGP_SPRETEiJ_G0032254) #11	Slc25a42 (MGP_SPRETEiJ_G0032253) #12	Tmem161a (MGP_SPRETEiJ_G0032252) #13	MGP_SPRETEiJ_G0032251 #14	MGP_SPRETEiJ_G0032250 #14	Nr2c2ap (MGP_SPRETEiJ_G0032249) #17	Rfxank (MGP_SPRETEiJ_G0032248) #16	Ncan (MGP_SPRETEiJ_G0032247) #18	Hapln4 (MGP_SPRETEiJ_G0032246) #19	Tm6sf2 (MGP_SPRETEiJ_G0032245) #20	Sugp1 (MGP_SPRETEiJ_G0032244) #21	Mau2 (MGP_SPRETEiJ_G0032243) #22	Gatad2a (MGP_SPRETEiJ_G0032242) #23	Tssk6 (MGP_SPRETEiJ_G0032241) #24	Ndufa13 (MGP_SPRETEiJ_G0032240) #25	Yjefn3 (MGP_SPRETEiJ_G0032239) #26	Cilp2 (MGP_SPRETEiJ_G0032238) #27	Pbx4 (MGP_SPRETEiJ_G0032237) #28	Lpar2 (MGP_SPRETEiJ_G0032236)	Gmip (MGP_SPRETEiJ_G0032235)	Atp13a1 (MGP_SPRETEiJ_G0032234)	Zfp866 (MGP_SPRETEiJ_G0032233)	MGP_SPRETEiJ_G0032232	Zfp963 (MGP_SPRETEiJ_G0032231)	Zfp869 (MGP_SPRETEiJ_G0032230)	Zfp964 (MGP_SPRETEiJ_G0032229)	Zfp868 (MGP_SPRETEiJ_G0032228)
Mouse	MODERN SPECIES	17	Cope (ENSMUSG00000055681) #7	Ddx49 (ENSMUSG00000057788) #8	Homer3 (ENSMUSG00000003573) #9	Sugp2 (ENSMUSG00000036054) #10	Armc6 (ENSMUSG00000002343) #11	Slc25a42 (ENSMUSG00000002346) #12	Tmem161a (ENSMUSG00000002342) #13	Mef2b (ENSMUSG00000079033) #14	Borcs8 (ENSMUSG00000002345) #15	Nr2c2ap (ENSMUSG00000071078) #17	Rfxank (ENSMUSG00000036120) #16	Ncan (ENSMUSG00000002341) #18	Hapln4 (ENSMUSG00000007594) #19	Tm6sf2 (ENSMUSG00000036151) #20	Sugp1 (ENSMUSG00000011306) #21	Mau2 (ENSMUSG00000031858) #22	Gatad2a (ENSMUSG00000036180) #23	Tssk6 (ENSMUSG00000047654) #24	Ndufa13 (ENSMUSG00000036199) #25	Yjefn3 (ENSMUSG00000048967) #26	Cilp2 (ENSMUSG00000044006) #27	Pbx4 (ENSMUSG00000031860) #28	Lpar2 (ENSMUSG00000031861)	Gmip (ENSMUSG00000036246)	Atp13a1 (ENSMUSG00000031862)	Zfp866 (ENSMUSG00000043090)	Gm20422 (ENSMUSG00000092544)	Zfp963 (ENSMUSG00000092260)	Zfp869 (ENSMUSG00000054648)	Zfp964 (ENSMUSG00000091764)	Zfp868 (ENSMUSG00000060427)
Ryukyu mouse	MODERN SPECIES	17	Cope (MGP_CAROLIEiJ_G0031140) #7	Ddx49 (MGP_CAROLIEiJ_G0031139) #8	Homer3 (MGP_CAROLIEiJ_G0031138) #9	Sugp2 (MGP_CAROLIEiJ_G0031137) #10	Armc6 (MGP_CAROLIEiJ_G0031136) #11	Slc25a42 (MGP_CAROLIEiJ_G0031135) #12	Tmem161a (MGP_CAROLIEiJ_G0031134) #13	MGP_CAROLIEiJ_G0031133 #14	MGP_CAROLIEiJ_G0031132 #14	Nr2c2ap (MGP_CAROLIEiJ_G0031131) #17	Rfxank (MGP_CAROLIEiJ_G0031130) #16	Ncan (MGP_CAROLIEiJ_G0031129) #18	Hapln4 (MGP_CAROLIEiJ_G0031128) #19	Tm6sf2 (MGP_CAROLIEiJ_G0031127) #20	Sugp1 (MGP_CAROLIEiJ_G0031126) #21	Mau2 (MGP_CAROLIEiJ_G0031125) #22	Gatad2a (MGP_CAROLIEiJ_G0031124) #23	Tssk6 (MGP_CAROLIEiJ_G0031123) #24	Ndufa13 (MGP_CAROLIEiJ_G0031122) #25	Yjefn3 (MGP_CAROLIEiJ_G0031121) #26	Cilp2 (MGP_CAROLIEiJ_G0031120) #27	Pbx4 (MGP_CAROLIEiJ_G0031119) #28	Lpar2 (MGP_CAROLIEiJ_G0031118)	Gmip (MGP_CAROLIEiJ_G0031117)	Atp13a1 (MGP_CAROLIEiJ_G0031116)	Zfp866 (MGP_CAROLIEiJ_G0031115)	MGP_CAROLIEiJ_G0031114	Zfp963 (MGP_CAROLIEiJ_G0031113)	Zfp869 (MGP_CAROLIEiJ_G0031112)	Zfp964 (MGP_CAROLIEiJ_G0031111)	Zfp868 (MGP_CAROLIEiJ_G0031110)
Shrew mouse	MODERN SPECIES	10	Cope (MGP_PahariEiJ_G0021605) #7	Ddx49 (MGP_PahariEiJ_G0021604) #8	Homer3 (MGP_PahariEiJ_G0021603) #9	Sugp2 (MGP_PahariEiJ_G0021602) #10	Armc6 (MGP_PahariEiJ_G0021601) #11	Slc25a42 (MGP_PahariEiJ_G0021600) #12	Tmem161a (MGP_PahariEiJ_G0021599) #13	MGP_PahariEiJ_G0021598 #14	MGP_PahariEiJ_G0021597 #14	Nr2c2ap (MGP_PahariEiJ_G0021596) #17	Rfxank (MGP_PahariEiJ_G0021595) #16	Ncan (MGP_PahariEiJ_G0021594) #18	Hapln4 (MGP_PahariEiJ_G0021593) #19	Tm6sf2 (MGP_PahariEiJ_G0021592) #20	Sugp1 (MGP_PahariEiJ_G0021591) #21	Mau2 (MGP_PahariEiJ_G0021590) #22	Gatad2a (MGP_PahariEiJ_G0021589) #23	Tssk6 (MGP_PahariEiJ_G0021588) #24	Ndufa13 (MGP_PahariEiJ_G0021587) #25	Yjefn3 (MGP_PahariEiJ_G0021586) #26	Cilp2 (MGP_PahariEiJ_G0021585) #27	Pbx4 (MGP_PahariEiJ_G0021584) #28	Lpar2 (MGP_PahariEiJ_G0021583)	Gmip (MGP_PahariEiJ_G0021582)	Atp13a1 (MGP_PahariEiJ_G0021581)	Zfp866 (MGP_PahariEiJ_G0021580)	MGP_PahariEiJ_G0021579	Zfp963 (MGP_PahariEiJ_G0021578)	Zfp869 (MGP_PahariEiJ_G0021577)	Zfp964 (MGP_PahariEiJ_G0021576)	Zfp868 (MGP_PahariEiJ_G0021575)
Rat	MODERN SPECIES	7	Cope (ENSRNOG00000020178) #7	Ddx49 (ENSRNOG00000022368) #8	Homer3 (ENSRNOG00000020229) #9	Sugp2 (ENSRNOG00000020269) #10	Armc6 (ENSRNOG00000020280) #11	Slc25a42 (ENSRNOG00000020345) #12	Tmem161a (ENSRNOG00000020390) #13	Mef2b (ENSRNOG00000020400) #14	Borcs8 (ENSRNOG00000020427) #15	Rfxank (ENSRNOG00000033318) #16	Nr2c2ap (ENSRNOG00000022247) #17	Ncan (ENSRNOG00000048036) #18	Hapln4 (ENSRNOG00000049949) #19	Tm6sf2 (ENSRNOG00000042237) #20	Sugp1 (ENSRNOG00000052111) #21	Mau2 (ENSRNOG00000020526) #22	Gatad2a (ENSRNOG00000022173) #23	Tssk6 (ENSRNOG00000020599) #24	Ndufa13 (ENSRNOG00000020602) #25	Yjefn3 (ENSRNOG00000039191) #26	Cilp2 (ENSRNOG00000020622) #27	Pbx4 (ENSRNOG00000010736) #28	Lpar2 (ENSRNOG00000010758)	Gmip (ENSRNOG00000027257)	Atp13a1 (ENSRNOG00000010776)	LOC108348302 (ENSRNOG00000011492)	Zfp866 (ENSRNOG00000042580)	Zfp869 (ENSRNOG00000033351)	Zfp964 (ENSRNOG00000042504)	LOC102551257 (ENSRNOG00000067812)	Zfp868 (ENSRNOG00000028919)
Cricetidae	ANCESTRAL SPECIES	30	ENSGT00390000003478 #7	ENSGT00730000111231 #8	ENSGT00940000158081 #9	ENSGT00410000025695.b #10	ENSGT00390000002913 #11	ENSGT00940000158163 #12	ENSGT00390000000672.a.a #13	ENSGT00940000160699 #14	ENSGT00390000014856 #15	ENSGT00940000160753 #16	ENSGT00390000017748 #17	ENSGT00940000158649 #18	ENSGT00940000160926 #19	ENSGT00390000012913.a #20	ENSGT00410000025695.a #21	ENSGT00390000012198 #22	ENSGT00390000004097.a #23	ENSGT00940000160464 #24	ENSGT00390000000719 #25	ENSGT00390000007227.b #26	ENSGT00390000008152.B.a #27	ENSGT00940000162643 #28	ENSGT01050000244941.B.c	ENSGT00950000183110.a	ENSGT00550000075064	ENSGT00950000182755.b.a.a.b.a.a.k.a.a	ENSGT00950000182755.b.a.a.b.a.a.k.b.a	ENSGT00950000182755.b.a.a.b.a.a.k.a.b.b	ENSGT00950000182755.b.a.a.b.a.a.k.b.b	ENSGT00950000182755.b.a.a.b.a.a.k.a.b.a
Cricetidae_B	ANCESTRAL SPECIES	17	ENSGT00390000003478 #7	ENSGT00730000111231 #8	ENSGT00940000158081 #9	ENSGT00410000025695.b #10	ENSGT00390000002913 #11	ENSGT00940000158163 #12	ENSGT00390000000672.a.a #13	ENSGT00940000160699 #14	ENSGT00390000014856 #15	ENSGT00940000160753 #16	ENSGT00390000017748 #17	ENSGT00940000158649 #18	ENSGT00940000160926 #19	ENSGT00390000012913.a #20	ENSGT00410000025695.a #21	ENSGT00390000012198 #22	ENSGT00390000004097.a #23	ENSGT00940000160464 #24	ENSGT00390000000719 #25	ENSGT00390000007227.b #26	ENSGT00390000008152.B.a #27	ENSGT00940000162643 #28	ENSGT01050000244941.B.c	ENSGT00950000183110.a	ENSGT00550000075064	ENSGT00950000182755.b.a.a.b.a.a.k.a.a	ENSGT00950000182755.b.a.a.b.a.a.k.b.a	ENSGT00950000182755.b.a.a.b.a.a.k.a.b.b	ENSGT00950000182755.b.a.a.b.a.a.k.b.b	ENSGT00950000182755.b.a.a.b.a.a.k.a.b.a
Prairie vole	MODERN SPECIES	164	Cope (ENSMOCG00000014940) #7	Ddx49 (ENSMOCG00000018690) #8	Homer3 (ENSMOCG00000013590) #9	Sugp2 (ENSMOCG00000009704) #10	Armc6 (ENSMOCG00000014288) #11	Slc25a42 (ENSMOCG00000012570) #12	Tmem161a (ENSMOCG00000018852) #13	Mef2b (ENSMOCG00000000308) #14	ENSMOCG00000008996 #15	Rfxank (ENSMOCG00000021751) #16	Nr2c2ap (ENSMOCG00000003423) #17	Ncan (ENSMOCG00000020207) #18	Hapln4 (ENSMOCG00000000353) #19	Tm6sf2 (ENSMOCG00000018885) #20	Sugp1 (ENSMOCG00000014670) #21	Mau2 (ENSMOCG00000003213) #22	Gatad2a (ENSMOCG00000001060) #23	Tssk6 (ENSMOCG00000007466) #24	Ndufa13 (ENSMOCG00000015070) #25	Yjefn3 (ENSMOCG00000019664) #26	Cilp2 (ENSMOCG00000018051) #27	Pbx4 (ENSMOCG00000001326) #28	Lpar2 (ENSMOCG00000014804)	ENSMOCG00000019025	Atp13a1 (ENSMOCG00000001496)	Zfp866 (ENSMOCG00000007573)	Zfp963 (ENSMOCG00000016227)	Zfp869 (ENSMOCG00000001013)	Zfp964 (ENSMOCG00000003187)	Zfp868 (ENSMOCG00000002776)
Northern American deer mouse	MODERN SPECIES	8	Cope (ENSPEMG00000018557) #7	Ddx49 (ENSPEMG00000009238) #8	Homer3 (ENSPEMG00000016382) #9	Sugp2 (ENSPEMG00000009700) #10	Armc6 (ENSPEMG00000012468) #11	Slc25a42 (ENSPEMG00000011354) #12	Tmem161a (ENSPEMG00000016451) #13	Mef2b (ENSPEMG00000018054) #14	Borcs8 (ENSPEMG00000010340) #15	Rfxank (ENSPEMG00000007761) #16	Nr2c2ap (ENSPEMG00000001962) #17	Ncan (ENSPEMG00000012564) #18	Hapln4 (ENSPEMG00000029211) #19	Tm6sf2 (ENSPEMG00000016397) #20	Sugp1 (ENSPEMG00000009253) #21	Mau2 (ENSPEMG00000016559) #22	Gatad2a (ENSPEMG00000012515) #23	Tssk6 (ENSPEMG00000007183) #24	Ndufa13 (ENSPEMG00000007743) #25	Yjefn3 (ENSPEMG00000011764) #26	Cilp2 (ENSPEMG00000008010) #27	Pbx4 (ENSPEMG00000010841) #28	Lpar2 (ENSPEMG00000012110)	Gmip (ENSPEMG00000006786)	Atp13a1 (ENSPEMG00000018771)	Zfp866 (ENSPEMG00000012624)	Zfp963 (ENSPEMG00000011994)	Zfp869 (ENSPEMG00000000596)	Zfp964 (ENSPEMG00000010305)	Zfp868 (ENSPEMG00000006111)	ENSPEMG00000026319
Cricetinae	ANCESTRAL SPECIES	36	ENSGT00390000003478 #7	ENSGT00730000111231 #8	ENSGT00940000158081 #9	ENSGT00410000025695.b #10	ENSGT00390000002913 #11	ENSGT00940000158163 #12	ENSGT00390000000672.a.a #13	ENSGT00940000160699 #14	ENSGT00390000014856 #15	ENSGT00940000160753 #16	ENSGT00390000017748 #17	ENSGT00940000158649 #18	ENSGT00940000160926 #19	ENSGT00390000012913.a #20	ENSGT00410000025695.a #21	ENSGT00390000012198 #22	ENSGT00390000004097.a #23	ENSGT00940000160464 #24	ENSGT00390000000719 #25	ENSGT00390000007227.b #26	ENSGT00390000008152.B.a #27	ENSGT00940000162643 #28	ENSGT01050000244941.B.c	ENSGT00950000183110.a	ENSGT00550000075064	ENSGT00950000182755.b.a.a.b.a.a.k.a.a	ENSGT00950000182755.b.a.a.b.a.a.k.b.a	ENSGT00950000182755.b.a.a.b.a.a.k.a.b.b	ENSGT00950000182755.b.a.a.b.a.a.k.b.b	ENSGT00950000182755.b.a.a.b.a.a.k.a.b.a
Chinese hamster chok1gshd	MODERN SPECIES	184	COPE (ENSCGRG00001024248) #7	Ddx49 (ENSCGRG00001009467) #8	Homer3 (ENSCGRG00001014952) #9	Sugp2 (ENSCGRG00001018264) #10	Armc6 (ENSCGRG00001019296) #11	Slc25a42 (ENSCGRG00001022045) #12	Tmem161a (ENSCGRG00001022808) #13	Mef2b (ENSCGRG00001014460) #14	Borcs8 (ENSCGRG00001020163) #15	Rfxank (ENSCGRG00001000782) #16	Nr2c2ap (ENSCGRG00001011302) #17	Ncan (ENSCGRG00001015055) #18	Hapln4 (ENSCGRG00001018509) #19	Tm6sf2 (ENSCGRG00001019424) #20	Sugp1 (ENSCGRG00001021250) #21	Mau2 (ENSCGRG00001009180) #22	Gatad2a (ENSCGRG00001018413) #23	Tssk6 (ENSCGRG00001010147) #24	Ndufa13 (ENSCGRG00001022785) #25	Yjefn3 (ENSCGRG00001023789) #26	Cilp2 (ENSCGRG00001007338) #27	Pbx4 (ENSCGRG00001014693) #28	Lpar2 (ENSCGRG00001015085)	Gmip (ENSCGRG00001000197)	Atp13a1 (ENSCGRG00001012808)	Zfp866 (ENSCGRG00001019443)	Zfp963 (ENSCGRG00001021819)	Zfp869 (ENSCGRG00001022854)	Zfp964 (ENSCGRG00001016061)	Zfp868 (ENSCGRG00001024449)	ENSCGRG00001007777
Golden Hamster	MODERN SPECIES	831	Cope (ENSMAUG00000016322) #7	Ddx49 (ENSMAUG00000010235) #8	Homer3 (ENSMAUG00000014150) #9	Sugp2 (ENSMAUG00000011371) #10	Armc6 (ENSMAUG00000011324) #11	Slc25a42 (ENSMAUG00000018082) #12	Tmem161a (ENSMAUG00000011694) #13	Mef2b (ENSMAUG00000006774) #14	Borcs8 (ENSMAUG00000014785) #15	Rfxank (ENSMAUG00000002477) #16	Nr2c2ap (ENSMAUG00000003921) #17	Ncan (ENSMAUG00000007276) #18	Hapln4 (ENSMAUG00000011983) #19	Tm6sf2 (ENSMAUG00000001556) #20	Sugp1 (ENSMAUG00000016683) #21	Mau2 (ENSMAUG00000021335) #22	Gatad2a (ENSMAUG00000021128) #23	Tssk6 (ENSMAUG00000008397) #24	Ndufa13 (ENSMAUG00000019158) #25	Yjefn3 (ENSMAUG00000021666) #26	Cilp2 (ENSMAUG00000005034) #27	Pbx4 (ENSMAUG00000000855) #28	Lpar2 (ENSMAUG00000020957)	Gmip (ENSMAUG00000020071)	Atp13a1 (ENSMAUG00000022087)	Zfp866 (ENSMAUG00000013777)	Zfp963 (ENSMAUG00000012846)	Zfp964 (ENSMAUG00000017867)	Zfp868 (ENSMAUG00000007713)	ENSMAUG00000000837
Upper Galilee mountains blind mole rat	MODERN SPECIES	1870	Cope (ENSNGAG00000022394) #7	Ddx49 (ENSNGAG00000019673) #8	Homer3 (ENSNGAG00000015803) #9	Sugp2 (ENSNGAG00000005936) #10	Armc6 (ENSNGAG00000021205) #11	Slc25a42 (ENSNGAG00000023980) #12	Tmem161a (ENSNGAG00000023788) #13	Mef2b (ENSNGAG00000010342) #14	Borcs8 (ENSNGAG00000023653) #15	Rfxank (ENSNGAG00000012986) #16	Nr2c2ap (ENSNGAG00000010770) #17	Ncan (ENSNGAG00000022597) #18	Hapln4 (ENSNGAG00000014554) #19	Tm6sf2 (ENSNGAG00000020192) #20	Sugp1 (ENSNGAG00000018965) #21	Mau2 (ENSNGAG00000015571) #22	Gatad2a (ENSNGAG00000004469) #23	Tssk6 (ENSNGAG00000001299) #24	Ndufa13 (ENSNGAG00000023080) #25	Yjefn3 (ENSNGAG00000021673) #26	Cilp2 (ENSNGAG00000011748) #27	Pbx4 (ENSNGAG00000013031) #28	Lpar2 (ENSNGAG00000022925)	Gmip (ENSNGAG00000012947)	Atp13a1 (ENSNGAG00000021636)	Zfp866 (ENSNGAG00000012916)	ENSNGAG00000022982	Zfp869 (ENSNGAG00000024282)	Zfp868 (ENSNGAG00000021523)
Lesser Egyptian jerboa	MODERN SPECIES	127	Comp (ENSJJAG00000011685)	Upf1 (ENSJJAG00000023151)	ENSJJAG00000000262	ENSJJAG00000016264	Cope (ENSJJAG00000017037) #7	Homer3 (ENSJJAG00000014551) #9	Sugp2 (ENSJJAG00000005264) #10	Armc6 (ENSJJAG00000014237) #11	Slc25a42 (ENSJJAG00000018672) #12	Mef2b (ENSJJAG00000009955) #14	Nr2c2ap (ENSJJAG00000023882) #17	Ncan (ENSJJAG00000018295) #18	Hapln4 (ENSJJAG00000016332) #19	Tm6sf2 (ENSJJAG00000023997) #20	Sugp1 (ENSJJAG00000013477) #21	Mau2 (ENSJJAG00000021815) #22	Gatad2a (ENSJJAG00000014763) #23	Tssk6 (ENSJJAG00000006030) #24	Ndufa13 (ENSJJAG00000021903) #25	Pbx4 (ENSJJAG00000010902) #28	Lpar2 (ENSJJAG00000022302)	Gmip (ENSJJAG00000013017)	Atp13a1 (ENSJJAG00000010806)	Mvb12a (ENSJJAG00000019047)	Ccdc194 (ENSJJAG00000013119)	Plvap (ENSJJAG00000000206)	Ano8 (ENSJJAG00000011527)	Dda1 (ENSJJAG00000021059)	Mrpl34 (ENSJJAG00000018808)	Abhd8 (ENSJJAG00000010342)	Ankle1 (ENSJJAG00000014888)
Kangaroo rat	MODERN SPECIES	427	ENSDORG00000023557	Cope (ENSDORG00000004298) #7	Ddx49 (ENSDORG00000004301) #8	ENSDORG00000004302 #9	Sugp2 (ENSDORG00000011519) #10	ENSDORG00000004418 #11	Slc25a42 (ENSDORG00000010998) #12	ENSDORG00000010999 #13	ENSDORG00000011003 #14	Borcs8 (ENSDORG00000027906) #15	Rfxank (ENSDORG00000001449) #16	Nr2c2ap (ENSDORG00000001440) #17	Hapln4 (ENSDORG00000004912) #19	Tm6sf2 (ENSDORG00000004913) #20	ENSDORG00000024315 #21	Mau2 (ENSDORG00000004918) #22	Gatad2a (ENSDORG00000008536) #23	Tssk6 (ENSDORG00000008538) #24	Lpar2 (ENSDORG00000023437)	Gmip (ENSDORG00000005179)	Atp13a1 (ENSDORG00000005185)	ENSDORG00000012240	ENSDORG00000027508	Rab8a (ENSDORG00000028823)	Cib3 (ENSDORG00000002313)	Fam32a (ENSDORG00000027872)	Eps15l1 (ENSDORG00000012303)	Calr3 (ENSDORG00000013084)	Cherp (ENSDORG00000027623)	Med26 (ENSDORG00000012119)	Slc35e1 (ENSDORG00000012110)
Rodentia_A	ANCESTRAL SPECIES	16	ENSGT00390000003478 #7	ENSGT00730000111231 #8	ENSGT00940000158081 #9	ENSGT00410000025695.b #10	ENSGT00390000002913 #11	ENSGT00940000158163 #12	ENSGT00390000000672.a.a #13	ENSGT00940000160699 #14	ENSGT00390000014856 #15	ENSGT00940000160753 #16	ENSGT00390000017748 #17	ENSGT00940000158649 #18	ENSGT00940000160926 #19	ENSGT00390000012913.a #20	ENSGT00410000025695.a #21	ENSGT00390000012198 #22	ENSGT00390000004097.a #23	ENSGT00940000160464 #24	ENSGT00390000000719 #25	ENSGT00390000007227.b #26	ENSGT00390000008152.B.a #27	ENSGT00940000162643 #28	ENSGT01050000244941.B.c	ENSGT00950000183110.a	ENSGT00550000075064
Sciuridae	ANCESTRAL SPECIES	20	ENSGT00390000003478 #7	ENSGT00730000111231 #8	ENSGT00940000158081 #9	ENSGT00410000025695.b #10	ENSGT00390000002913 #11	ENSGT00940000158163 #12	ENSGT00390000000672.a.a #13	ENSGT00940000160699 #14	ENSGT00390000014856 #15	ENSGT00940000160753 #16	ENSGT00390000017748 #17	ENSGT00940000158649 #18	ENSGT00940000160926 #19	ENSGT00390000012913.a #20	ENSGT00410000025695.a #21	ENSGT00390000012198 #22	ENSGT00390000004097.a #23	ENSGT00940000160464 #24	ENSGT00390000000719 #25	ENSGT00390000007227.b #26	ENSGT00390000008152.B.a #27	ENSGT00940000162643 #28	ENSGT01050000244941.B.c	ENSGT00950000183110.a	ENSGT00550000075064	ENSGT00960000186612.B.a.b.a.b.a.b.i.a.a.b	ENSGT00390000000410	ENSGT00940000160737	ENSGT00940000159742	ENSGT00940000158279	ENSGT00940000156347
Marmotini	ANCESTRAL SPECIES	12	ENSGT00390000003478 #7	ENSGT00730000111231 #8	ENSGT00940000158081 #9	ENSGT00410000025695.b #10	ENSGT00390000002913 #11	ENSGT00940000158163 #12	ENSGT00390000000672.a.a #13	ENSGT00940000160699 #14	ENSGT00390000014856 #15	ENSGT00940000160753 #16	ENSGT00390000017748 #17	ENSGT00940000158649 #18	ENSGT00940000160926 #19	ENSGT00390000012913.a #20	ENSGT00410000025695.a #21	ENSGT00390000012198 #22	ENSGT00390000004097.a #23	ENSGT00940000160464 #24	ENSGT00390000000719 #25	ENSGT00390000007227.b #26	ENSGT00390000008152.B.a #27	ENSGT00940000162643 #28	ENSGT01050000244941.B.c	ENSGT00950000183110.a	ENSGT00550000075064	ENSGT00950000182755.b.a.a.b.a.a.l	ENSGT00960000186612.B.a.b.a.b.a.b.i.a.b	ENSGT00960000186612.B.a.b.a.b.a.b.i.a.a.b	ENSGT00390000000410	ENSGT00940000160737	ENSGT00940000159742
Marmotini_b	ANCESTRAL SPECIES	12	ENSGT00390000003478 #7	ENSGT00730000111231 #8	ENSGT00940000158081 #9	ENSGT00410000025695.b #10	ENSGT00390000002913 #11	ENSGT00940000158163 #12	ENSGT00390000000672.a.a #13	ENSGT00940000160699 #14	ENSGT00390000014856 #15	ENSGT00940000160753 #16	ENSGT00390000017748 #17	ENSGT00940000158649 #18	ENSGT00940000160926 #19	ENSGT00390000012913.a #20	ENSGT00410000025695.a #21	ENSGT00390000012198 #22	ENSGT00390000004097.a #23	ENSGT00940000160464 #24	ENSGT00390000000719 #25	ENSGT00390000007227.b #26	ENSGT00390000008152.B.a #27	ENSGT00940000162643 #28	ENSGT01050000244941.B.c	ENSGT00950000183110.a	ENSGT00550000075064	ENSGT00950000182755.b.a.a.b.a.a.l	ENSGT00960000186612.B.a.b.a.b.a.b.i.a.b	ENSGT00960000186612.B.a.b.a.b.a.b.i.a.a.b	ENSGT00390000000410	ENSGT00940000160737	ENSGT00390000018390.yb
Arctic ground squirrel	MODERN SPECIES	73	COPE (ENSUPAG00010018276) #7	DDX49 (ENSUPAG00010018246) #8	HOMER3 (ENSUPAG00010018230) #9	SUGP2 (ENSUPAG00010018216) #10	ARMC6 (ENSUPAG00010018208) #11	SLC25A42 (ENSUPAG00010018191) #12	TMEM161A (ENSUPAG00010018179) #13	MEF2B (ENSUPAG00010018172) #14	BORCS8 (ENSUPAG00010018165) #15	RFXANK (ENSUPAG00010018152) #16	NR2C2AP (ENSUPAG00010018146) #17	NCAN (ENSUPAG00010018127) #18	HAPLN4 (ENSUPAG00010018121) #19	TM6SF2 (ENSUPAG00010018116) #20	SUGP1 (ENSUPAG00010018104) #21	MAU2 (ENSUPAG00010018075) #22	GATAD2A (ENSUPAG00010018036) #23	TSSK6 (ENSUPAG00010018027) #24	YJEFN3 (ENSUPAG00010018017) #26	CILP2 (ENSUPAG00010018008) #27	PBX4 (ENSUPAG00010017995) #28	LPAR2 (ENSUPAG00010017989)	GMIP (ENSUPAG00010017934)	ATP13A1 (ENSUPAG00010017873)	ENSUPAG00010017861	ENSUPAG00010017854	ENSUPAG00010017852	CAMP (ENSUPAG00010017843)	ENSUPAG00010017839	CDC25A (ENSUPAG00010017812)	ENSUPAG00010017794
Squirrel	MODERN SPECIES	196	COPE (ENSSTOG00000006736) #7	DDX49 (ENSSTOG00000006749) #8	HOMER3 (ENSSTOG00000029095) #9	SUGP2 (ENSSTOG00000026887) #10	ARMC6 (ENSSTOG00000012997) #11	SLC25A42 (ENSSTOG00000022047) #12	TMEM161A (ENSSTOG00000005867) #13	MEF2B (ENSSTOG00000005895) #14	BORCS8 (ENSSTOG00000025422) #15	RFXANK (ENSSTOG00000024080) #16	NR2C2AP (ENSSTOG00000001006) #17	NCAN (ENSSTOG00000001012) #18	HAPLN4 (ENSSTOG00000007240) #19	TM6SF2 (ENSSTOG00000025054) #20	SUGP1 (ENSSTOG00000001020) #21	MAU2 (ENSSTOG00000001026) #22	GATAD2A (ENSSTOG00000022640) #23	TSSK6 (ENSSTOG00000021351) #24	NDUFA13 (ENSSTOG00000022888) #25	YJEFN3 (ENSSTOG00000023979) #26	CILP2 (ENSSTOG00000026823) #27	ENSSTOG00000019762	PBX4 (ENSSTOG00000007166) #28	LPAR2 (ENSSTOG00000021678)	GMIP (ENSSTOG00000007176)	ATP13A1 (ENSSTOG00000007205)	CAMP (ENSSTOG00000015157)	ENSSTOG00000034924	CDC25A (ENSSTOG00000015144)	ENSSTOG00000024015	ENSSTOG00000026772
Alpin marmot	MODERN SPECIES	24	COPE (ENSMMMG00000002634) #7	DDX49 (ENSMMMG00000002658) #8	HOMER3 (ENSMMMG00000002691) #9	SUGP2 (ENSMMMG00000002743) #10	ARMC6 (ENSMMMG00000002877) #11	SLC25A42 (ENSMMMG00000002914) #12	TMEM161A (ENSMMMG00000002937) #13	MEF2B (ENSMMMG00000002982) #14	BORCS8 (ENSMMMG00000003015) #15	RFXANK (ENSMMMG00000003029) #16	NR2C2AP (ENSMMMG00000003044) #17	NCAN (ENSMMMG00000003066) #18	HAPLN4 (ENSMMMG00000003386) #19	TM6SF2 (ENSMMMG00000003397) #20	SUGP1 (ENSMMMG00000003416) #21	MAU2 (ENSMMMG00000003432) #22	GATAD2A (ENSMMMG00000003539) #23	TSSK6 (ENSMMMG00000003603) #24	NDUFA13 (ENSMMMG00000003609) #25	YJEFN3 (ENSMMMG00000003614) #26	CILP2 (ENSMMMG00000003635) #27	PBX4 (ENSMMMG00000003652) #28	ENSMMMG00000003669	LPAR2 (ENSMMMG00000003676)	GMIP (ENSMMMG00000003685)	ATP13A1 (ENSMMMG00000003751)	ENSMMMG00000003843	ENSMMMG00000003852	ENSMMMG00000003860	ENSMMMG00000003867	ENSMMMG00000003887
Eurasian red squirrel	MODERN SPECIES	7	DDX49 (ENSSVLG00005016654) #8	HOMER3 (ENSSVLG00005016701) #9	SUGP2 (ENSSVLG00005016823) #10	ARMC6 (ENSSVLG00005016951) #11	SLC25A42 (ENSSVLG00005017005) #12	TMEM161A (ENSSVLG00005017057) #13	MEF2B (ENSSVLG00005017215) #14	BORCS8 (ENSSVLG00005017305) #15	RFXANK (ENSSVLG00005017362) #16	NR2C2AP (ENSSVLG00005017403) #17	NCAN (ENSSVLG00005017503) #18	ENSSVLG00005017692	HAPLN4 (ENSSVLG00005017756) #19	TM6SF2 (ENSSVLG00005017792) #20	SUGP1 (ENSSVLG00005017843) #21	MAU2 (ENSSVLG00005017993) #22	GATAD2A (ENSSVLG00005018054) #23	TSSK6 (ENSSVLG00005018119) #24	NDUFA13 (ENSSVLG00005018132) #25	YJEFN3 (ENSSVLG00005018175) #26	CILP2 (ENSSVLG00005018243) #27	PBX4 (ENSSVLG00005018272) #28	LPAR2 (ENSSVLG00005018364)	GMIP (ENSSVLG00005018416)	ATP13A1 (ENSSVLG00005018497)	ENSSVLG00005018537	ENSSVLG00005018572	ENSSVLG00005018591	ZNF670 (ENSSVLG00005018638)	ENSSVLG00005018685	ENSSVLG00005018729
Hystricomorpha	ANCESTRAL SPECIES	47	ENSGT00390000003478 #7	ENSGT00730000111231 #8	ENSGT00940000158081 #9	ENSGT00410000025695.b #10	ENSGT00390000002913 #11	ENSGT00940000158163 #12	ENSGT00390000000672.a.a #13	ENSGT00940000160699 #14	ENSGT00390000014856 #15	ENSGT00940000160753 #16	ENSGT00390000017748 #17	ENSGT00940000158649 #18	ENSGT00940000160926 #19	ENSGT00390000012913.a #20	ENSGT00410000025695.a #21	ENSGT00390000012198 #22	ENSGT00390000004097.a #23	ENSGT00940000160464 #24	ENSGT00390000000719 #25	ENSGT00390000007227.b #26	ENSGT00390000008152.B.a #27	ENSGT01050000244941.B.c	ENSGT00950000183110.a	ENSGT00550000075064
Naked mole-rat female	MODERN SPECIES	21	ENSHGLG00000006789 #8	HOMER3 (ENSHGLG00000006851) #9	ARMC6 (ENSHGLG00000008147) #11	SLC25A42 (ENSHGLG00000008826) #12	TMEM161A (ENSHGLG00000009517) #13	ENSHGLG00000003123 #14	MEF2BNB (ENSHGLG00000047513) #15	RFXANK (ENSHGLG00000003396) #16	NR2C2AP (ENSHGLG00000033726) #17	NCAN (ENSHGLG00000034381) #18	HAPLN4 (ENSHGLG00000003896) #19	TM6SF2 (ENSHGLG00000004113) #20	ENSHGLG00000042474 #21	ENSHGLG00000039617 #10	ENSHGLG00000048186 #21	ENSHGLG00000049094 #22	GATAD2A (ENSHGLG00000003176) #23	TSSK6 (ENSHGLG00000020778) #24	NDUFA13 (ENSHGLG00000018628) #25	YJEFN3 (ENSHGLG00000019524) #26	CILP2 (ENSHGLG00000018931) #27	LPAR2 (ENSHGLG00000035704)	ENSHGLG00000013806	ENSHGLG00000003184	ENSHGLG00000042271	ENSHGLG00000044603	ENSHGLG00000046812	ENSHGLG00000039559	ENSHGLG00000049921	ENSHGLG00000020580	ENSHGLG00000021231
Hystricomorpha_a	ANCESTRAL SPECIES	55	ENSGT00390000003478 #7	ENSGT00730000111231 #8	ENSGT00940000158081 #9	ENSGT00410000025695.b #10	ENSGT00390000002913 #11	ENSGT00940000158163 #12	ENSGT00390000000672.a.a #13	ENSGT00940000160699 #14	ENSGT00390000014856 #15	ENSGT00940000160753 #16	ENSGT00390000017748 #17	ENSGT00940000158649 #18	ENSGT00940000160926 #19	ENSGT00390000012913.a #20	ENSGT00410000025695.a #21	ENSGT00390000012198 #22	ENSGT00390000004097.a #23	ENSGT00940000160464 #24	ENSGT00390000000719 #25	ENSGT00390000007227.b #26	ENSGT00390000008152.B.a #27	ENSGT01050000244941.B.c	ENSGT00950000183110.a	ENSGT00550000075064	ENSGT01030000234542.b.b.a.a.a.b	ENSGT00940000157246	ENSGT00940000161678	ENSGT00940000160466	ENSGT00390000013811	ENSGT00940000157924	ENSGT00940000163163
Guinea pig	MODERN SPECIES	72	CERS1 (ENSCPOG00000033783)	COPE (ENSCPOG00000013624) #7	DDX49 (ENSCPOG00000013626) #8	HOMER3 (ENSCPOG00000004565) #9	SUGP2 (ENSCPOG00000006372) #10	ARMC6 (ENSCPOG00000006374) #11	SLC25A42 (ENSCPOG00000013086) #12	TMEM161A (ENSCPOG00000013640) #13	MEF2B (ENSCPOG00000032781) #14	BORCS8 (ENSCPOG00000036178) #15	RFXANK (ENSCPOG00000003121) #16	NR2C2AP (ENSCPOG00000032927) #17	HAPLN4 (ENSCPOG00000023683) #19	TM6SF2 (ENSCPOG00000022916) #20	SUGP1 (ENSCPOG00000007797) #21	MAU2 (ENSCPOG00000003755) #22	GATAD2A (ENSCPOG00000015396) #23	TSSK6 (ENSCPOG00000024320) #24	NDUFA13 (ENSCPOG00000019995) #25	YJEFN3 (ENSCPOG00000023842) #26	CILP2 (ENSCPOG00000007219) #27	LPAR2 (ENSCPOG00000012652)	GMIP (ENSCPOG00000011161)	ATP13A1 (ENSCPOG00000011167)	ENSCPOG00000022796
Hystricomorpha_b	ANCESTRAL SPECIES	66	ENSGT00390000003478 #7	ENSGT00730000111231 #8	ENSGT00940000158081 #9	ENSGT00410000025695.b #10	ENSGT00390000002913 #11	ENSGT00940000158163 #12	ENSGT00390000000672.a.a #13	ENSGT00940000160699 #14	ENSGT00390000014856 #15	ENSGT00940000160753 #16	ENSGT00390000017748 #17	ENSGT00940000158649 #18	ENSGT00940000160926 #19	ENSGT00390000012913.a #20	ENSGT00410000025695.a #21	ENSGT00390000012198 #22	ENSGT00390000004097.a #23	ENSGT00940000160464 #24	ENSGT00390000000719 #25	ENSGT00390000007227.b #26	ENSGT00390000008152.B.a #27	ENSGT01050000244941.B.c	ENSGT00950000183110.a	ENSGT00550000075064	ENSGT01030000234542.b.b.a.a.a.b	ENSGT00940000157246	ENSGT00940000161678	ENSGT00940000160466	ENSGT00390000013811	ENSGT00940000157924	ENSGT00940000155438.b
Long-tailed chinchilla	MODERN SPECIES	231	COPE (ENSCLAG00000003621) #7	DDX49 (ENSCLAG00000012844) #8	HOMER3 (ENSCLAG00000011599) #9	SUGP2 (ENSCLAG00000011375) #10	ARMC6 (ENSCLAG00000008215) #11	SLC25A42 (ENSCLAG00000008004) #12	TMEM161A (ENSCLAG00000007578) #13	MEF2B (ENSCLAG00000007377) #14	BORCS8 (ENSCLAG00000004959) #15	RFXANK (ENSCLAG00000004632) #16	NR2C2AP (ENSCLAG00000004378) #17	NCAN (ENSCLAG00000004140) #18	HAPLN4 (ENSCLAG00000003955) #19	TM6SF2 (ENSCLAG00000003633) #20	SUGP1 (ENSCLAG00000003512) #21	MAU2 (ENSCLAG00000006535) #22	GATAD2A (ENSCLAG00000010160) #23	TSSK6 (ENSCLAG00000018107) #24	NDUFA13 (ENSCLAG00000016915) #25	YJEFN3 (ENSCLAG00000016158) #26	CILP2 (ENSCLAG00000015928) #27	LPAR2 (ENSCLAG00000016969)	GMIP (ENSCLAG00000008010)	ATP13A1 (ENSCLAG00000009549)	ENSCLAG00000007428	ENSCLAG00000007229	DDX11 (ENSCLAG00000007090)	ENSCLAG00000006498	ENSCLAG00000006263	TPM4 (ENSCLAG00000006213)	RAB8A (ENSCLAG00000006073)
Degu	MODERN SPECIES	323	COPE (ENSODEG00000011547) #7	DDX49 (ENSODEG00000011203) #8	HOMER3 (ENSODEG00000014870) #9	SUGP2 (ENSODEG00000012058) #10	ARMC6 (ENSODEG00000012613) #11	SLC25A42 (ENSODEG00000012168) #12	TMEM161A (ENSODEG00000012343) #13	MEF2B (ENSODEG00000012357) #14	BORCS8 (ENSODEG00000013003) #15	RFXANK (ENSODEG00000013006) #16	NR2C2AP (ENSODEG00000011486) #17	NCAN (ENSODEG00000011699) #18	HAPLN4 (ENSODEG00000011689) #19	TM6SF2 (ENSODEG00000010936) #20	SUGP1 (ENSODEG00000011538) #21	MAU2 (ENSODEG00000012887) #22	GATAD2A (ENSODEG00000013506) #23	TSSK6 (ENSODEG00000020032) #24	NDUFA13 (ENSODEG00000013435) #25	YJEFN3 (ENSODEG00000011107) #26	CILP2 (ENSODEG00000010764) #27	LPAR2 (ENSODEG00000010920)	GMIP (ENSODEG00000010205)	ATP13A1 (ENSODEG00000010691)	ENSODEG00000019897	ENSODEG00000011452	ENSODEG00000010301	ENSODEG00000011437
Lagomorpha	ANCESTRAL SPECIES	270											ENSGT00390000017748 #17	ENSGT00940000158649 #18	ENSGT00940000160926 #19	ENSGT00390000012913.a #20	ENSGT00410000025695.a #21	ENSGT00390000012198 #22	ENSGT00390000004097.a #23	ENSGT01090000261752	ENSGT00940000160464 #24
Rabbit	MODERN SPECIES	858															ENSOCUG00000038816 #21	MAU2 (ENSOCUG00000002263) #22	GATAD2A (ENSOCUG00000017513) #23	ENSOCUG00000039262	TSSK6 (ENSOCUG00000026975) #24
Pika	MODERN SPECIES	3990											NR2C2AP (ENSOPRG00000004162) #17	NCAN (ENSOPRG00000004179) #18	HAPLN4 (ENSOPRG00000004236) #19	ENSOPRG00000018692 #20	SUGP1 (ENSOPRG00000004247) #21	ENSOPRG00000018947 #22
Tree shrew	MODERN SPECIES	3502																MAU2 (ENSTBEG00000015497) #22	GATAD2A (ENSTBEG00000015854) #23
Primates	ANCESTRAL SPECIES	18	ENSGT00390000003478 #7	ENSGT00730000111231 #8	ENSGT00940000158081 #9	ENSGT00410000025695.b #10	ENSGT00390000002913 #11	ENSGT00940000158163 #12	ENSGT00390000000672.a.a #13	ENSGT00940000160699 #14	ENSGT00390000014856 #15	ENSGT00940000160753 #16	ENSGT00390000017748 #17	ENSGT00940000158649 #18	ENSGT00940000160926 #19	ENSGT00390000012913.a #20	ENSGT00410000025695.a #21	ENSGT00390000012198 #22	ENSGT00390000004097.a #23	ENSGT00940000160464 #24	ENSGT00390000000719 #25	ENSGT00390000007227.b #26	ENSGT00390000008152.B.a #27	ENSGT00940000162643 #28	ENSGT01050000244941.B.c	ENSGT00950000183110.a	ENSGT00550000075064	ENSGT00950000182755.b.a.a.a.a.a.b.d.a
Haplorrhini	ANCESTRAL SPECIES	14	ENSGT00390000003478 #7	ENSGT00730000111231 #8	ENSGT00940000158081 #9	ENSGT00410000025695.b #10	ENSGT00390000002913 #11	ENSGT00940000158163 #12	ENSGT00390000000672.a.a #13	ENSGT00940000160699 #14	ENSGT00390000014856 #15	ENSGT00940000160753 #16	ENSGT00390000017748 #17	ENSGT00940000158649 #18	ENSGT00940000160926 #19	ENSGT00390000012913.a #20	ENSGT00410000025695.a #21	ENSGT00390000012198 #22	ENSGT00390000004097.a #23	ENSGT00940000160464 #24	ENSGT00390000000719 #25	ENSGT00390000007227.b #26	ENSGT00390000008152.B.a #27	ENSGT00940000162643 #28	ENSGT01050000244941.B.c	ENSGT00950000183110.a	ENSGT00550000075064	ENSGT00950000182755.b.a.a.a.a.a.b.d.a
Simiiformes	ANCESTRAL SPECIES	13	ENSGT00390000003478 #7	ENSGT00730000111231 #8	ENSGT00940000158081 #9	ENSGT00410000025695.b #10	ENSGT00390000002913 #11	ENSGT00940000158163 #12	ENSGT00390000000672.a.a #13	ENSGT00940000160699 #14	ENSGT00390000014856 #15	ENSGT00940000160753 #16	ENSGT00390000017748 #17	ENSGT00940000158649 #18	ENSGT00940000160926 #19	ENSGT00390000012913.a #20	ENSGT00410000025695.a #21	ENSGT00390000012198 #22	ENSGT00390000004097.a #23	ENSGT00940000160464 #24	ENSGT00390000000719 #25	ENSGT00390000007227.b #26	ENSGT00390000008152.B.a #27	ENSGT00940000162643 #28	ENSGT01050000244941.B.c	ENSGT00950000183110.a	ENSGT00550000075064	ENSGT00950000182755.b.a.a.b.a.b.a.a	ENSGT00950000182755.b.a.a.a.a.a.b.d.a	ENSGT00390000001014	ENSGT00940000161356	ENSGT00390000010067	ENSGT00940000160728
Catarrhini	ANCESTRAL SPECIES		ENSGT00730000111231 #8	ENSGT00940000158081 #9	ENSGT00410000025695.b #10	ENSGT00390000002913 #11	ENSGT00940000158163 #12	ENSGT00910000148304	ENSGT00390000000672.a.a #13	ENSGT00940000160699 #14	ENSGT00390000014856.d #15	ENSGT00940000160753 #16	ENSGT00390000017748 #17	ENSGT00940000158649 #18	ENSGT00940000160926 #19	ENSGT00390000012913.a #20	ENSGT00410000025695.a.n.a #21	ENSGT00390000012198 #22	ENSGT00390000004097.a #23	ENSGT00940000160464 #24	ENSGT00390000000719 #25	ENSGT00390000007227.b #26	ENSGT00390000008152.B.a #27	ENSGT00940000162643 #28	ENSGT01050000244941.B.c	ENSGT00950000183110.a	ENSGT00550000075064	ENSGT00950000182755.b.a.a.b.a.b.a.a	ENSGT00950000182755.b.a.a.a.a.a.b.d.a	ENSGT00940000153236.a.a.b.b	ENSGT00940000162960.A	ENSGT00940000154251.A.a.b	ENSGT00940000165698.B
Hominoidea	ANCESTRAL SPECIES		ENSGT00730000111231 #8	ENSGT00940000158081 #9	ENSGT00410000025695.b #10	ENSGT00390000002913 #11	ENSGT00940000158163 #12	ENSGT00910000148304	ENSGT00390000000672.a.a #13	ENSGT00940000160699 #14	ENSGT00390000014856.d #15	ENSGT00940000160753 #16	ENSGT00390000017748 #17	ENSGT00940000158649 #18	ENSGT00940000160926 #19	ENSGT00390000012913.a #20	ENSGT00410000025695.a.n.a #21	ENSGT00390000012198 #22	ENSGT00390000004097.a #23	ENSGT00940000160464 #24	ENSGT00390000000719 #25	ENSGT00390000007227.b #26	ENSGT00390000008152.B.a #27	ENSGT00940000162643 #28	ENSGT01050000244941.B.c	ENSGT00950000183110.a	ENSGT00550000075064	ENSGT00950000182755.b.a.a.b.a.b.a.a	ENSGT00950000182755.b.a.a.a.a.a.b.d.a	ENSGT00940000153236.a.a.b.b	ENSGT00490000043385.u.a.b	ENSGT00940000162960.A	ENSGT00940000154251.A.a.b
Hominidae	ANCESTRAL SPECIES		ENSGT00390000003478 #7	ENSGT00730000111231 #8	ENSGT00940000158081 #9	ENSGT00410000025695.b #10	ENSGT00390000002913 #11	ENSGT00940000158163 #12	ENSGT00390000000672.a.a #13	ENSGT00940000160699 #14	ENSGT00390000014856.d #15	ENSGT00940000160753 #16	ENSGT00390000017748 #17	ENSGT00940000158649 #18	ENSGT00940000160926 #19	ENSGT00390000012913.a #20	ENSGT00410000025695.a.n.a #21	ENSGT00390000012198 #22	ENSGT00390000004097.a #23	ENSGT00940000160464 #24	ENSGT00390000000719 #25	ENSGT00390000007227.b #26	ENSGT00390000008152.B.a #27	ENSGT00940000162643 #28	ENSGT01050000244941.B.c	ENSGT00950000183110.a	ENSGT00550000075064	ENSGT00950000182755.b.a.a.b.a.b.a.a	ENSGT00950000182755.b.a.a.a.a.a.b.d.a	ENSGT00940000153236.a.a.b.b	ENSGT00490000043385.u.a.b	ENSGT00940000162960.A	ENSGT00940000154251.A.a.b
Homo/Pan/Gorilla group	ANCESTRAL SPECIES		ENSGT00390000003478 #7	ENSGT00730000111231 #8	ENSGT00940000158081 #9	ENSGT00410000025695.b #10	ENSGT00390000002913 #11	ENSGT00940000158163 #12	ENSGT00390000000672.a.a #13	ENSGT00940000160699 #14	ENSGT00390000014856.d #15	ENSGT00940000160753 #16	ENSGT00390000017748 #17	ENSGT00940000158649 #18	ENSGT00940000160926 #19	ENSGT00390000012913.a #20	ENSGT00410000025695.a.n.a #21	ENSGT00390000012198 #22	ENSGT00390000004097.a #23	ENSGT00940000160464 #24	ENSGT00390000000719 #25	ENSGT00390000007227.b #26	ENSGT00390000008152.B.a #27	ENSGT00940000162643 #28	ENSGT01050000244941.B.c	ENSGT00950000183110.a	ENSGT00550000075064	ENSGT00950000182755.b.a.a.b.a.b.a.a	ENSGT00950000182755.b.a.a.a.a.a.b.d.a	ENSGT00940000153236.a.a.b.b	ENSGT00490000043385.u.a.b	ENSGT00940000162960.A	ENSGT00940000154251.A.a.b
Gorilla	MODERN SPECIES	10	COPE (ENSGGOG00000006987) #7	DDX49 (ENSGGOG00000037966) #8	HOMER3 (ENSGGOG00000007011) #9	SUGP2 (ENSGGOG00000013540) #10	ARMC6 (ENSGGOG00000006708) #11	SLC25A42 (ENSGGOG00000008113) #12	TMEM161A (ENSGGOG00000022481) #13	MEF2B (ENSGGOG00000009730) #14	BORCS8 (ENSGGOG00000044155) #15	RFXANK (ENSGGOG00000012530) #16	NR2C2AP (ENSGGOG00000012536) #17	NCAN (ENSGGOG00000002977) #18	HAPLN4 (ENSGGOG00000002981) #19	TM6SF2 (ENSGGOG00000002983) #20	SUGP1 (ENSGGOG00000002984) #21	MAU2 (ENSGGOG00000002989) #22	GATAD2A (ENSGGOG00000005973) #23	TSSK6 (ENSGGOG00000042656) #24	NDUFA13 (ENSGGOG00000040690) #25	YJEFN3 (ENSGGOG00000005985) #26	CILP2 (ENSGGOG00000005993) #27	PBX4 (ENSGGOG00000006000) #28	LPAR2 (ENSGGOG00000006010)	GMIP (ENSGGOG00000006016)	ATP13A1 (ENSGGOG00000006026)	ZNF101 (ENSGGOG00000006033)	ZNF14 (ENSGGOG00000022750)	ENSGGOG00000022087	ENSGGOG00000043851	ZNF93 (ENSGGOG00000001955)	ZNF682 (ENSGGOG00000041772)
Homo/Pan group	ANCESTRAL SPECIES		ENSGT00390000003478 #7	ENSGT00730000111231 #8	ENSGT00940000158081 #9	ENSGT00410000025695.b #10	ENSGT00390000002913 #11	ENSGT00940000158163 #12	ENSGT00390000000672.a.a #13	ENSGT00940000160699 #14	ENSGT00390000014856.d #15	ENSGT00940000160753 #16	ENSGT00390000017748 #17	ENSGT00940000158649 #18	ENSGT00940000160926 #19	ENSGT00390000012913.a #20	ENSGT00410000025695.a.n.a #21	ENSGT00390000012198 #22	ENSGT00390000004097.a #23	ENSGT00940000160464 #24	ENSGT00390000000719 #25	ENSGT00390000007227.b #26	ENSGT00390000008152.B.a #27	ENSGT00940000162643 #28	ENSGT01050000244941.B.c	ENSGT00950000183110.a	ENSGT00550000075064	ENSGT00950000182755.b.a.a.b.a.b.a.a	ENSGT00950000182755.b.a.a.a.a.a.b.d.a	ENSGT00940000153236.a.a.b.b	ENSGT00490000043385.u.a.b	ENSGT00940000162960.A	ENSGT00940000154251.A.a.b
Human	MODERN SPECIES	10	DDX49 (ENSG00000105671) #8	HOMER3 (ENSG00000051128) #9	SUGP2 (ENSG00000064607) #10	ARMC6 (ENSG00000105676) #11	SLC25A42 (ENSG00000181035) #12	TMEM161A (ENSG00000064545) #13	MEF2B (ENSG00000213999) #14	BORCS8-MEF2B (ENSG00000064489)	BORCS8 (ENSG00000254901) #15	RFXANK (ENSG00000064490) #16	NR2C2AP (ENSG00000184162) #17	NCAN (ENSG00000130287) #18	HAPLN4 (ENSG00000187664) #19	TM6SF2 (ENSG00000213996) #20	SUGP1 (ENSG00000105705) #21	MAU2 (ENSG00000129933) #22	GATAD2A (ENSG00000167491) #23	TSSK6 (ENSG00000178093) #24	NDUFA13 (ENSG00000186010) #25	ENSG00000258674	YJEFN3 (ENSG00000250067) #26	CILP2 (ENSG00000160161) #27	PBX4 (ENSG00000105717) #28	LPAR2 (ENSG00000064547)	GMIP (ENSG00000089639)	ATP13A1 (ENSG00000105726)	ZNF101 (ENSG00000181896)	ZNF14 (ENSG00000105708)	ZNF506 (ENSG00000081665)	ZNF253 (ENSG00000256771)	ZNF93 (ENSG00000184635)
Pan	ANCESTRAL SPECIES	14	ENSGT00390000003478 #7	ENSGT00730000111231 #8	ENSGT00940000158081 #9	ENSGT00410000025695.b #10	ENSGT00390000002913 #11	ENSGT00940000158163 #12	ENSGT00390000000672.a.a #13	ENSGT00940000160699 #14	ENSGT00390000014856.d #15	ENSGT00940000160753 #16	ENSGT00390000017748 #17	ENSGT00940000158649 #18	ENSGT00940000160926 #19	ENSGT00390000012913.a #20	ENSGT00410000025695.a.n.a #21	ENSGT00390000012198 #22	ENSGT00390000004097.a #23	ENSGT00940000160464 #24	ENSGT00390000000719 #25	ENSGT00390000007227.b #26	ENSGT00390000008152.B.a #27	ENSGT00940000162643 #28	ENSGT01050000244941.B.c	ENSGT00950000183110.a	ENSGT00550000075064	ENSGT00950000182755.b.a.a.b.a.b.a.a	ENSGT00950000182755.b.a.a.a.a.a.b.d.a	ENSGT00940000153236.a.a.b.b	ENSGT00490000043385.u.a.b	ENSGT00940000162960.A	ENSGT00940000154251.A.a.b
Chimpanzee	MODERN SPECIES	10	COPE (ENSPTRG00000010723) #7	DDX49 (ENSPTRG00000010725) #8	HOMER3 (ENSPTRG00000010726) #9	SUGP2 (ENSPTRG00000010727) #10	ARMC6 (ENSPTRG00000010728) #11	SLC25A42 (ENSPTRG00000010729) #12	TMEM161A (ENSPTRG00000010730) #13	MEF2B (ENSPTRG00000010731) #14	BORCS8 (ENSPTRG00000039907) #15	RFXANK (ENSPTRG00000010732) #16	NR2C2AP (ENSPTRG00000010733) #17	NCAN (ENSPTRG00000010734) #18	HAPLN4 (ENSPTRG00000033676) #19	TM6SF2 (ENSPTRG00000010736) #20	SUGP1 (ENSPTRG00000010737) #21	MAU2 (ENSPTRG00000010738) #22	GATAD2A (ENSPTRG00000010739) #23	ENSPTRG00000043712 #24	NDUFA13 (ENSPTRG00000010741) #25	YJEFN3 (ENSPTRG00000010742) #26	CILP2 (ENSPTRG00000010743) #27	PBX4 (ENSPTRG00000010744) #28	LPAR2 (ENSPTRG00000010745)	GMIP (ENSPTRG00000010746)	ATP13A1 (ENSPTRG00000010747)	ZNF101 (ENSPTRG00000045970)	ZNF14 (ENSPTRG00000022814)	ZNF506 (ENSPTRG00000010755)	ENSPTRG00000045322	ZNF253 (ENSPTRG00000029074)	ZNF93 (ENSPTRG00000042811)
Bonobo	MODERN SPECIES	10	COPE (ENSPPAG00000020767) #7	DDX49 (ENSPPAG00000035217) #8	HOMER3 (ENSPPAG00000037113) #9	SUGP2 (ENSPPAG00000043787) #10	ARMC6 (ENSPPAG00000040716) #11	SLC25A42 (ENSPPAG00000036060) #12	TMEM161A (ENSPPAG00000041901) #13	MEF2B (ENSPPAG00000029747) #14	BORCS8 (ENSPPAG00000033735) #15	RFXANK (ENSPPAG00000032045) #16	NR2C2AP (ENSPPAG00000008303) #17	NCAN (ENSPPAG00000003961) #18	HAPLN4 (ENSPPAG00000013291) #19	TM6SF2 (ENSPPAG00000043499) #20	SUGP1 (ENSPPAG00000037102) #21	MAU2 (ENSPPAG00000032359) #22	GATAD2A (ENSPPAG00000003218) #23	TSSK6 (ENSPPAG00000022354) #24	ENSPPAG00000016456 #25	YJEFN3 (ENSPPAG00000025286) #26	CILP2 (ENSPPAG00000035758) #27	PBX4 (ENSPPAG00000035891) #28	LPAR2 (ENSPPAG00000043772)	GMIP (ENSPPAG00000037482)	ATP13A1 (ENSPPAG00000042644)	ZNF101 (ENSPPAG00000028690)	ZNF14 (ENSPPAG00000036864)	ENSPPAG00000028827	ENSPPAG00000040622	ENSPPAG00000039166	ENSPPAG00000024536
Orangutan	MODERN SPECIES	10	COPE (ENSPPYG00000009753) #7	DDX49 (ENSPPYG00000009755) #8	HOMER3 (ENSPPYG00000035001) #9	SUGP2 (ENSPPYG00000009756) #10	ARMC6 (ENSPPYG00000009757) #11	SLC25A42 (ENSPPYG00000009758) #12	TMEM161A (ENSPPYG00000009759) #13	MEF2B (ENSPPYG00000009760) #14	BORCS8 (ENSPPYG00000039532) #15	RFXANK (ENSPPYG00000009761) #16	NR2C2AP (ENSPPYG00000009762) #17	NCAN (ENSPPYG00000009763) #18	HAPLN4 (ENSPPYG00000009764) #19	TM6SF2 (ENSPPYG00000009765) #20	SUGP1 (ENSPPYG00000009766) #21	MAU2 (ENSPPYG00000009767) #22	GATAD2A (ENSPPYG00000009769) #23	TSSK6 (ENSPPYG00000009770) #24	NDUFA13 (ENSPPYG00000036460) #25	YJEFN3 (ENSPPYG00000009772) #26	CILP2 (ENSPPYG00000009773) #27	PBX4 (ENSPPYG00000035724) #28	LPAR2 (ENSPPYG00000009774)	GMIP (ENSPPYG00000009775)	ATP13A1 (ENSPPYG00000009776)	ZNF101 (ENSPPYG00000009777)	ZNF14 (ENSPPYG00000009778)	ENSPPYG00000009781	ENSPPYG00000035360	ZNF682 (ENSPPYG00000040895)	ENSPPYG00000033266
Gibbon	MODERN SPECIES		DDX49 (ENSNLEG00000006136) #8	HOMER3 (ENSNLEG00000006154) #9	SUGP2 (ENSNLEG00000006162) #10	ARMC6 (ENSNLEG00000006169) #11	ENSNLEG00000006185	SLC25A42 (ENSNLEG00000027898) #12	ENSNLEG00000006186 #13	MEF2B (ENSNLEG00000006191) #14	ENSNLEG00000006195 #15	RFXANK (ENSNLEG00000006200) #16	NR2C2AP (ENSNLEG00000006212) #17	NCAN (ENSNLEG00000006221) #18	HAPLN4 (ENSNLEG00000006225) #19	TM6SF2 (ENSNLEG00000006229) #20	SUGP1 (ENSNLEG00000006236) #21	MAU2 (ENSNLEG00000026855) #22	GATAD2A (ENSNLEG00000006277) #23	TSSK6 (ENSNLEG00000019216) #24	NDUFA13 (ENSNLEG00000006289) #25	YJEFN3 (ENSNLEG00000027046) #26	CILP2 (ENSNLEG00000006302) #27	ENSNLEG00000018526	ENSNLEG00000034918	PBX4 (ENSNLEG00000006307) #28	ENSNLEG00000006312	ATP13A1 (ENSNLEG00000006315)	ZNF101 (ENSNLEG00000006338)	ZNF14 (ENSNLEG00000006339)	ZNF506 (ENSNLEG00000006340)	ENSNLEG00000031307	ENSNLEG00000029893
Cercopithecidae	ANCESTRAL SPECIES	17	ENSGT00730000111231 #8	ENSGT00940000158081 #9	ENSGT00410000025695.b #10	ENSGT00390000002913 #11	ENSGT00940000158163 #12	ENSGT00910000148304	ENSGT00390000000672.a.a #13	ENSGT00940000160699 #14	ENSGT00390000014856.d #15	ENSGT00940000160753 #16	ENSGT00390000017748 #17	ENSGT00940000158649 #18	ENSGT00940000160926 #19	ENSGT00390000012913.a #20	ENSGT00410000025695.a.n.a #21	ENSGT00390000012198 #22	ENSGT00390000004097.a.a #23	ENSGT00940000160464 #24	ENSGT00390000000719 #25	ENSGT00390000007227.b #26	ENSGT00390000008152.B.a #27	ENSGT00940000162643 #28	ENSGT01050000244941.B.c	ENSGT00950000183110.a	ENSGT00550000075064	ENSGT00950000182755.b.a.a.b.a.b.a.a	ENSGT00390000007479.y.b	ENSGT00950000182755.b.a.a.a.a.a.b.d.a	ENSGT00940000153236.a.a.b.b	ENSGT00940000162960.A	ENSGT00940000154251.A.a.b
Cercopithecinae	ANCESTRAL SPECIES	1	ENSGT00730000111231 #8	ENSGT00940000158081 #9	ENSGT00410000025695.b #10	ENSGT00390000002913 #11	ENSGT00940000158163 #12	ENSGT00910000148304	ENSGT00390000000672.a.a #13	ENSGT00940000160699 #14	ENSGT00390000014856.d #15	ENSGT00940000160753 #16	ENSGT00390000017748 #17	ENSGT00940000158649 #18	ENSGT00940000160926 #19	ENSGT00390000012913.a #20	ENSGT00410000025695.a.n.a #21	ENSGT00390000012198 #22	ENSGT00390000004097.a.a #23	ENSGT00940000160464 #24	ENSGT00390000000719 #25	ENSGT00390000007227.b #26	ENSGT00390000008152.B.a #27	ENSGT00940000162643 #28	ENSGT01050000244941.B.c	ENSGT00950000183110.a	ENSGT00550000075064	ENSGT00950000182755.b.a.a.b.a.b.a.a	ENSGT00390000007479.y.b	ENSGT00950000182755.b.a.a.a.a.a.b.d.a	ENSGT01100000263495.E	ENSGT00940000162960.A.c	ENSGT00940000154251.A.a.b
Cercopithecinae_a	ANCESTRAL SPECIES	3	ENSGT00730000111231 #8	ENSGT00940000158081 #9	ENSGT00410000025695.b #10	ENSGT00390000002913 #11	ENSGT00940000158163 #12	ENSGT00910000148304	ENSGT00390000000672.a.a #13	ENSGT00940000160699 #14	ENSGT00390000014856.d #15	ENSGT00940000160753 #16	ENSGT00390000017748 #17	ENSGT00940000158649 #18	ENSGT00940000160926 #19	ENSGT00390000012913.a #20	ENSGT00410000025695.a.n.a #21	ENSGT00390000012198 #22	ENSGT00390000004097.a.a #23	ENSGT00940000160464 #24	ENSGT00390000000719 #25	ENSGT00390000007227.b #26	ENSGT00390000008152.B.a #27	ENSGT00940000162643 #28	ENSGT01050000244941.B.c	ENSGT00950000183110.a	ENSGT00550000075064	ENSGT00950000182755.b.a.a.b.a.b.a.a	ENSGT00390000007479.y.b	ENSGT00950000182755.b.a.a.a.a.a.b.d.a	ENSGT01100000263495.E	ENSGT00940000162960.A.c	ENSGT00940000154251.A.a.b
Cercopithecinae_b	ANCESTRAL SPECIES	13	ENSGT00390000003478 #7	ENSGT00730000111231 #8	ENSGT00940000158081 #9	ENSGT00410000025695.b #10	ENSGT00390000002913 #11	ENSGT00940000158163 #12	ENSGT00390000000672.a.a #13	ENSGT00940000160699 #14	ENSGT00390000014856.d #15	ENSGT00940000160753 #16	ENSGT00390000017748 #17	ENSGT00940000158649 #18	ENSGT00940000160926 #19	ENSGT00390000012913.a #20	ENSGT00410000025695.a.n.a #21	ENSGT00390000012198 #22	ENSGT00390000004097.a.a #23	ENSGT00940000160464 #24	ENSGT00390000000719 #25	ENSGT00390000007227.b #26	ENSGT00390000008152.B.a #27	ENSGT00940000162643 #28	ENSGT01050000244941.B.c	ENSGT00950000183110.a	ENSGT00550000075064	ENSGT00950000182755.b.a.a.b.a.b.a.a	ENSGT00390000007479.y.b	ENSGT00950000182755.b.a.a.a.a.a.b.d.a	ENSGT01100000263495.E	ENSGT00940000162960.A.c	ENSGT00940000154251.A.a.b
Olive baboon	MODERN SPECIES	12	COPE (ENSPANG00000002532) #7	DDX49 (ENSPANG00000003161) #8	HOMER3 (ENSPANG00000004386) #9	SUGP2 (ENSPANG00000004442) #10	ARMC6 (ENSPANG00000002531) #11	SLC25A42 (ENSPANG00000004441) #12	TMEM161A (ENSPANG00000023920) #13	MEF2B (ENSPANG00000023043) #14	BORCS8 (ENSPANG00000034354) #15	RFXANK (ENSPANG00000011633) #16	NR2C2AP (ENSPANG00000017708) #17	NCAN (ENSPANG00000017942) #18	HAPLN4 (ENSPANG00000004385) #19	TM6SF2 (ENSPANG00000017375) #20	SUGP1 (ENSPANG00000014398) #21	MAU2 (ENSPANG00000002876) #22	GATAD2A (ENSPANG00000011632) #23	TSSK6 (ENSPANG00000005919) #24	NDUFA13 (ENSPANG00000001628) #25	YJEFN3 (ENSPANG00000015322) #26	CILP2 (ENSPANG00000002530) #27	PBX4 (ENSPANG00000004463) #28	LPAR2 (ENSPANG00000020387)	GMIP (ENSPANG00000020293)	ATP13A1 (ENSPANG00000003160)	ZNF14 (ENSPANG00000006684)	ZNF506 (ENSPANG00000007279)	ENSPANG00000046193	ZNF93 (ENSPANG00000015321)	ZNF682 (ENSPANG00000017939)	ENSPANG00000042028
Cercopithecinae_d	ANCESTRAL SPECIES	8	ENSGT00390000003478 #7	ENSGT00730000111231 #8	ENSGT00940000158081 #9	ENSGT00410000025695.b #10	ENSGT00390000002913 #11	ENSGT00940000158163 #12	ENSGT00390000000672.a.a #13	ENSGT00940000160699 #14	ENSGT00390000014856.d #15	ENSGT00940000160753 #16	ENSGT00390000017748 #17	ENSGT00940000158649 #18	ENSGT00940000160926 #19	ENSGT00390000012913.a #20	ENSGT00410000025695.a.n.a #21	ENSGT00390000012198 #22	ENSGT00390000004097.a.a #23	ENSGT00940000160464 #24	ENSGT00390000000719 #25	ENSGT00390000007227.b #26	ENSGT00390000008152.B.a #27	ENSGT00940000162643 #28	ENSGT01050000244941.B.c	ENSGT00950000183110.a	ENSGT00550000075064	ENSGT00950000182755.b.a.a.b.a.b.a.a	ENSGT00390000007479.y.b	ENSGT00950000182755.b.a.a.a.a.a.b.d.a	ENSGT01100000263495.E	ENSGT00940000162960.A.c	ENSGT00940000154251.A.a.b
Sooty mangabey	MODERN SPECIES	347	COPE (ENSCATG00000038467) #7	DDX49 (ENSCATG00000032577) #8	HOMER3 (ENSCATG00000036483) #9	SUGP2 (ENSCATG00000029755) #10	ARMC6 (ENSCATG00000032065) #11	SLC25A42 (ENSCATG00000035155) #12	TMEM161A (ENSCATG00000036119) #13	MEF2B (ENSCATG00000031174) #14	BORCS8 (ENSCATG00000034039) #15	RFXANK (ENSCATG00000032949) #16	NR2C2AP (ENSCATG00000035313) #17	NCAN (ENSCATG00000033037) #18	HAPLN4 (ENSCATG00000033215) #19	TM6SF2 (ENSCATG00000038371) #20	SUGP1 (ENSCATG00000033059) #21	MAU2 (ENSCATG00000015302) #22	ENSCATG00000035199 #23	TSSK6 (ENSCATG00000003439) #24	NDUFA13 (ENSCATG00000038956) #25	YJEFN3 (ENSCATG00000037712) #26	CILP2 (ENSCATG00000040476) #27	PBX4 (ENSCATG00000035336) #28	LPAR2 (ENSCATG00000036510)	GMIP (ENSCATG00000030063)	ATP13A1 (ENSCATG00000034481)	ZNF101 (ENSCATG00000020203)	ZNF14 (ENSCATG00000028572)	ENSCATG00000037145	ZNF93 (ENSCATG00000042867)	ENSCATG00000039728 #23	ZNF682 (ENSCATG00000040224)
Drill	MODERN SPECIES	160	COPE (ENSMLEG00000042923) #7	DDX49 (ENSMLEG00000042550) #8	HOMER3 (ENSMLEG00000042234) #9	SUGP2 (ENSMLEG00000036719) #10	ARMC6 (ENSMLEG00000039585) #11	SLC25A42 (ENSMLEG00000038599) #12	TMEM161A (ENSMLEG00000041570) #13	MEF2B (ENSMLEG00000002780) #14	BORCS8 (ENSMLEG00000036175) #15	RFXANK (ENSMLEG00000007628) #16	NR2C2AP (ENSMLEG00000026610) #17	NCAN (ENSMLEG00000035960) #18	HAPLN4 (ENSMLEG00000043866) #19	TM6SF2 (ENSMLEG00000027647) #20	SUGP1 (ENSMLEG00000043364) #21	MAU2 (ENSMLEG00000035371) #22	GATAD2A (ENSMLEG00000040547) #23	TSSK6 (ENSMLEG00000010320) #24	NDUFA13 (ENSMLEG00000027225) #25	CILP2 (ENSMLEG00000038834) #27	PBX4 (ENSMLEG00000028081) #28	ENSMLEG00000038352	LPAR2 (ENSMLEG00000038948)	GMIP (ENSMLEG00000015104)	ATP13A1 (ENSMLEG00000038891)	ZNF101 (ENSMLEG00000038564)	ENSMLEG00000034754	ZNF14 (ENSMLEG00000024882)	ZNF506 (ENSMLEG00000035015)	ENSMLEG00000039824	ENSMLEG00000042742
Macaca	ANCESTRAL SPECIES	21	ENSGT00730000111231 #8	ENSGT00940000158081 #9	ENSGT00410000025695.b #10	ENSGT00390000002913 #11	ENSGT00940000158163 #12	ENSGT00910000148304	ENSGT00390000000672.a.a #13	ENSGT00940000160699 #14	ENSGT00390000014856.d #15	ENSGT00940000160753 #16	ENSGT00390000017748 #17	ENSGT00940000158649 #18	ENSGT00940000160926 #19	ENSGT00390000012913.a #20	ENSGT00410000025695.a.n.a #21	ENSGT00390000012198 #22	ENSGT00390000004097.a.a #23	ENSGT00940000160464 #24	ENSGT00390000000719 #25	ENSGT00390000007227.b #26	ENSGT00390000008152.B.a #27	ENSGT00940000162643 #28	ENSGT01050000244941.B.c	ENSGT00950000183110.a	ENSGT00550000075064	ENSGT00950000182755.b.a.a.b.a.b.a.a	ENSGT00390000007479.y.b	ENSGT00950000182755.b.a.a.a.a.a.b.d.a	ENSGT00940000153236.a.a.b.b	ENSGT00940000162960.A.c	ENSGT00940000154251.A.a.b
Macaca_a	ANCESTRAL SPECIES	1	ENSGT01030000234515.b	ENSGT00390000003478 #7	ENSGT00730000111231 #8	ENSGT00940000158081 #9	ENSGT00410000025695.b #10	ENSGT00390000002913 #11	ENSGT00940000158163 #12	ENSGT00390000000672.a.a #13	ENSGT00940000160699 #14	ENSGT00940000160753 #16	ENSGT00390000017748 #17	ENSGT00940000158649 #18	ENSGT00940000160926 #19	ENSGT00390000012913.a #20	ENSGT00410000025695.a.n.a #21	ENSGT00390000012198 #22	ENSGT00390000004097.a.a #23	ENSGT00940000160464 #24	ENSGT00390000007227.b #26	ENSGT00390000008152.B.a #27	ENSGT00940000162643 #28	ENSGT01050000244941.B.c	ENSGT00950000183110.a	ENSGT00550000075064	ENSGT00950000182755.b.a.a.b.a.b.a.a	ENSGT00950000182755.b.a.a.a.a.a.b.d.a	ENSGT00940000165497.F.b.b.a.a.a	ENSGT00940000153236.a.a.b.b	ENSGT00940000162960.A.c	ENSGT00940000154251.A.a.b	ENSGT00940000153236.b.b.b.a.a.a.a.a.a.b
Rhesus	MODERN SPECIES	10	CERS1 (ENSMMUG00000059247)	COPE (ENSMMUG00000023291) #7	DDX49 (ENSMMUG00000023293) #8	HOMER3 (ENSMMUG00000023294) #9	SUGP2 (ENSMMUG00000019665) #10	ARMC6 (ENSMMUG00000019668) #11	SLC25A42 (ENSMMUG00000019669) #12	TMEM161A (ENSMMUG00000018367) #13	BORCS8 (ENSMMUG00000018368) #14	RFXANK (ENSMMUG00000010722) #16	NR2C2AP (ENSMMUG00000010723) #17	NCAN (ENSMMUG00000062498) #18	HAPLN4 (ENSMMUG00000008578) #19	TM6SF2 (ENSMMUG00000008576) #20	SUGP1 (ENSMMUG00000028834) #21	MAU2 (ENSMMUG00000008931) #22	GATAD2A (ENSMMUG00000003164) #23	TSSK6 (ENSMMUG00000049072) #24	YJEFN3 (ENSMMUG00000011351) #26	CILP2 (ENSMMUG00000011352) #27	PBX4 (ENSMMUG00000048108) #28	LPAR2 (ENSMMUG00000000654)	GMIP (ENSMMUG00000003036)	ATP13A1 (ENSMMUG00000043400)	ENSMMUG00000005860	ZNF14 (ENSMMUG00000021989)	ENSMMUG00000062373	ZNF506 (ENSMMUG00000028833)	ENSMMUG00000061017	ZNF93 (ENSMMUG00000054055)	ENSMMUG00000063297
Crab-eating macaque	MODERN SPECIES	10	GDF1 (ENSMFAG00000064570)	COPE (ENSMFAG00000038870) #7	DDX49 (ENSMFAG00000044697) #8	HOMER3 (ENSMFAG00000031509) #9	SUGP2 (ENSMFAG00000040352) #10	ARMC6 (ENSMFAG00000000505) #11	TMEM161A (ENSMFAG00000043553) #13	SLC25A42 (ENSMFAG00000039473) #12	MEF2B (ENSMFAG00000032755) #14	RFXANK (ENSMFAG00000003753) #16	NR2C2AP (ENSMFAG00000042311) #17	NCAN (ENSMFAG00000043588) #18	HAPLN4 (ENSMFAG00000029816) #19	TM6SF2 (ENSMFAG00000006917) #20	SUGP1 (ENSMFAG00000031157) #21	MAU2 (ENSMFAG00000041829) #22	ENSMFAG00000002152 #23	YJEFN3 (ENSMFAG00000011503) #26	CILP2 (ENSMFAG00000064577) #27	PBX4 (ENSMFAG00000031948) #28	GMIP (ENSMFAG00000046087)	LPAR2 (ENSMFAG00000040780)	ATP13A1 (ENSMFAG00000045331)	ZNF101 (ENSMFAG00000042473)	ZNF14 (ENSMFAG00000042563)	ENSMFAG00000056328	ZNF506 (ENSMFAG00000039702)	ZNF93 (ENSMFAG00000035382)	ENSMFAG00000039432	ENSMFAG00000003085 #23	ENSMFAG00000037779
Pig-tailed macaque	MODERN SPECIES	76	DDX49 (ENSMNEG00000029654) #8	HOMER3 (ENSMNEG00000042042) #9	SUGP2 (ENSMNEG00000043062) #10	ARMC6 (ENSMNEG00000043051) #11	ENSMNEG00000030397	SLC25A42 (ENSMNEG00000043911) #12	TMEM161A (ENSMNEG00000027465) #13	MEF2B (ENSMNEG00000041102) #14	BORCS8 (ENSMNEG00000033374) #15	NR2C2AP (ENSMNEG00000037479) #17	RFXANK (ENSMNEG00000025165) #16	NCAN (ENSMNEG00000029669) #18	HAPLN4 (ENSMNEG00000034804) #19	TM6SF2 (ENSMNEG00000043588) #20	SUGP1 (ENSMNEG00000042010) #21	MAU2 (ENSMNEG00000034232) #22	ENSMNEG00000043233 #23	TSSK6 (ENSMNEG00000009045) #24	NDUFA13 (ENSMNEG00000039567) #25	YJEFN3 (ENSMNEG00000037092) #26	CILP2 (ENSMNEG00000034197) #27	ENSMNEG00000010618	PBX4 (ENSMNEG00000041601) #28	LPAR2 (ENSMNEG00000042518)	GMIP (ENSMNEG00000042233)	ATP13A1 (ENSMNEG00000029828)	ZNF101 (ENSMNEG00000034981)	ENSMNEG00000042306	ZNF14 (ENSMNEG00000020785)	ZNF506 (ENSMNEG00000037374)
Vervet Monkey	MODERN SPECIES	25	COPE (ENSCSAG00000005262) #7	DDX49 (ENSCSAG00000005251) #8	HOMER3 (ENSCSAG00000005233) #9	SUGP2 (ENSCSAG00000005226) #10	ARMC6 (ENSCSAG00000005225) #11	SLC25A42 (ENSCSAG00000005223) #12	TMEM161A (ENSCSAG00000005220) #13	MEF2B (ENSCSAG00000005217) #14	BORCS8 (ENSCSAG00000005214) #15	RFXANK (ENSCSAG00000005210) #16	NR2C2AP (ENSCSAG00000005205) #17	NCAN (ENSCSAG00000005190) #18	HAPLN4 (ENSCSAG00000005162) #19	TM6SF2 (ENSCSAG00000005157) #20	SUGP1 (ENSCSAG00000005148) #21	MAU2 (ENSCSAG00000005122) #22	GATAD2A (ENSCSAG00000005096) #23	TSSK6 (ENSCSAG00000018500) #24	NDUFA13 (ENSCSAG00000005084) #25	CILP2 (ENSCSAG00000005072) #27	PBX4 (ENSCSAG00000005070) #28	LPAR2 (ENSCSAG00000005063)	GMIP (ENSCSAG00000005061)	ATP13A1 (ENSCSAG00000005054)	ZNF101 (ENSCSAG00000005048)	ZNF14 (ENSCSAG00000005044)	ENSCSAG00000005039	ENSCSAG00000005037	ENSCSAG00000005034	ZNF682 (ENSCSAG00000005029)	ENSCSAG00000005026
Rhinopithecus	ANCESTRAL SPECIES		ENSGT00390000003478 #7	ENSGT00730000111231 #8	ENSGT00940000158081 #9	ENSGT00410000025695.b #10	ENSGT00390000002913 #11	ENSGT00940000158163 #12	ENSGT00390000000672.a.a #13	ENSGT00940000160699 #14	ENSGT00390000014856.d #15	ENSGT00940000160753 #16	ENSGT00390000017748 #17	ENSGT00940000158649 #18	ENSGT00940000160926 #19	ENSGT00390000012913.a #20	ENSGT00410000025695.a.n.a #21	ENSGT00390000012198 #22	ENSGT00390000004097.a.a #23	ENSGT00940000160464 #24	ENSGT00390000000719 #25	ENSGT00390000007227.b #26	ENSGT00390000008152.B.a #27	ENSGT00940000162643 #28	ENSGT01050000244941.B.c	ENSGT00950000183110.a	ENSGT00550000075064	ENSGT00950000182755.b.a.a.b.a.b.a.a	ENSGT00390000007479.y.b	ENSGT00950000182755.b.a.a.a.a.a.b.d.a	ENSGT00940000153236.a.a.b.b
Black snub-nosed monkey	MODERN SPECIES	1576	DDX49 (ENSRBIG00000030758) #8	HOMER3 (ENSRBIG00000038778) #9	SUGP2 (ENSRBIG00000020354) #10	ARMC6 (ENSRBIG00000038109) #11	ENSRBIG00000034545	SLC25A42 (ENSRBIG00000027977) #12	TMEM161A (ENSRBIG00000035635) #13	MEF2B (ENSRBIG00000037482) #14	BORCS8 (ENSRBIG00000044655) #15	NR2C2AP (ENSRBIG00000035480) #17	RFXANK (ENSRBIG00000027696) #16	NCAN (ENSRBIG00000028711) #18	HAPLN4 (ENSRBIG00000028696) #19	TM6SF2 (ENSRBIG00000035648) #20	SUGP1 (ENSRBIG00000035555) #21	MAU2 (ENSRBIG00000036077) #22	ENSRBIG00000029752 #23	TSSK6 (ENSRBIG00000020631) #24	NDUFA13 (ENSRBIG00000029310) #25	YJEFN3 (ENSRBIG00000044837) #26	CILP2 (ENSRBIG00000033619) #27	PBX4 (ENSRBIG00000043379) #28	LPAR2 (ENSRBIG00000028307)	GMIP (ENSRBIG00000034503)	ATP13A1 (ENSRBIG00000028613)	ZNF101 (ENSRBIG00000029302)	ZNF14 (ENSRBIG00000042038)	ENSRBIG00000030741
Golden snub-nosed monkey	MODERN SPECIES	2586	COPE (ENSRROG00000032396) #7	DDX49 (ENSRROG00000032460) #8	HOMER3 (ENSRROG00000038822) #9	SUGP2 (ENSRROG00000029264) #10	ARMC6 (ENSRROG00000034739) #11	SLC25A42 (ENSRROG00000040352) #12	TMEM161A (ENSRROG00000024629) #13	MEF2B (ENSRROG00000033740) #14	BORCS8 (ENSRROG00000045680) #15	RFXANK (ENSRROG00000028283) #16	NR2C2AP (ENSRROG00000033994) #17	NCAN (ENSRROG00000037872) #18	HAPLN4 (ENSRROG00000029649) #19	TM6SF2 (ENSRROG00000036675) #20	SUGP1 (ENSRROG00000030048) #21	MAU2 (ENSRROG00000032649) #22	ENSRROG00000031855 #23	TSSK6 (ENSRROG00000027240) #24	NDUFA13 (ENSRROG00000043641) #25	YJEFN3 (ENSRROG00000040358) #26	CILP2 (ENSRROG00000044306) #27	PBX4 (ENSRROG00000033089) #28	LPAR2 (ENSRROG00000044369)	GMIP (ENSRROG00000033996)	ATP13A1 (ENSRROG00000033237)	ZNF101 (ENSRROG00000034698)	ENSRROG00000040378	ZNF14 (ENSRROG00000034519)	ZNF506 (ENSRROG00000034835)
Platyrrhini	ANCESTRAL SPECIES	25	ENSGT00390000003478 #7	ENSGT00730000111231 #8	ENSGT00940000158081.g.a #9	ENSGT00410000025695.b #10	ENSGT00390000002913 #11	ENSGT00940000158163 #12	ENSGT00390000000672.a.a #13	ENSGT00940000160699 #14	ENSGT00390000014856 #15	ENSGT00940000160753 #16	ENSGT00390000017748 #17	ENSGT00940000158649 #18	ENSGT00940000160926 #19	ENSGT00390000012913.a #20	ENSGT00410000025695.a #21	ENSGT00390000012198 #22	ENSGT00390000004097.a #23	ENSGT00940000160464 #24	ENSGT00390000000719 #25	ENSGT00390000007227.b #26	ENSGT00390000008152.B.a #27	ENSGT00940000162643 #28	ENSGT01050000244941.B.c	ENSGT00950000183110.a	ENSGT00550000075064	ENSGT00950000182755.b.a.a.b.a.b.a.a.g.a	ENSGT00950000182755.b.a.a.a.a.a.b.d.a	ENSGT00390000001014.n	ENSGT00940000161356	ENSGT00390000010067.c	ENSGT00940000160728
Cebidae	ANCESTRAL SPECIES	8	ENSGT00390000003478 #7	ENSGT00730000111231 #8	ENSGT00940000158081.g.a #9	ENSGT00410000025695.b #10	ENSGT00390000002913 #11	ENSGT00940000158163 #12	ENSGT00390000000672.a.a #13	ENSGT00940000160699 #14	ENSGT00390000014856 #15	ENSGT00940000160753 #16	ENSGT00390000017748 #17	ENSGT00940000158649 #18	ENSGT00940000160926 #19	ENSGT00390000012913.a #20	ENSGT00410000025695.a #21	ENSGT00390000012198 #22	ENSGT00390000004097.a #23	ENSGT00940000160464 #24	ENSGT00390000000719 #25	ENSGT00390000007227.b #26	ENSGT00390000008152.B.a #27	ENSGT00940000162643 #28	ENSGT01050000244941.B.c	ENSGT00950000183110.a	ENSGT00550000075064	ENSGT00950000182755.b.a.a.b.a.b.a.a.g.a	ENSGT00950000182755.b.a.a.a.a.a.b.d.a	ENSGT00940000154251.A.a.b	ENSGT00390000001014.n	ENSGT00940000161356	ENSGT00390000010067.c
Marmoset	MODERN SPECIES	14	DDX49 (ENSCJAG00000042114) #8	HOMER3 (ENSCJAG00000080144) #9	SUGP2 (ENSCJAG00000019714) #10	ARMC6 (ENSCJAG00000019747) #11	SLC25A42 (ENSCJAG00000044017) #12	TMEM161A (ENSCJAG00000019759) #13	MEF2B (ENSCJAG00000019767) #14	BORCS8 (ENSCJAG00000046526) #15	RFXANK (ENSCJAG00000019775) #16	NR2C2AP (ENSCJAG00000019782) #17	NCAN (ENSCJAG00000008512) #18	ENSCJAG00000070942	HAPLN4 (ENSCJAG00000073329) #19	TM6SF2 (ENSCJAG00000039656) #20	SUGP1 (ENSCJAG00000005755) #21	MAU2 (ENSCJAG00000039088) #22	GATAD2A (ENSCJAG00000040704) #23	ENSCJAG00000043112 #25	YJEFN3 (ENSCJAG00000005654) #26	CILP2 (ENSCJAG00000005650) #27	ENSCJAG00000073644	ENSCJAG00000070214	ENSCJAG00000023241	LPAR2 (ENSCJAG00000005646)	GMIP (ENSCJAG00000005633)	ZNF101 (ENSCJAG00000005545)	ZNF14 (ENSCJAG00000005527)	ENSCJAG00000060061	ENSCJAG00000071921	ENSCJAG00000072189	ENSCJAG00000039521
Cebidae_a	ANCESTRAL SPECIES	48	ENSGT00390000003478 #7	ENSGT00730000111231 #8	ENSGT00940000158081.g.a #9	ENSGT00410000025695.b #10	ENSGT00390000002913 #11	ENSGT00940000158163 #12	ENSGT00390000000672.a.a #13	ENSGT00940000160699 #14	ENSGT00390000014856 #15	ENSGT00940000160753 #16	ENSGT00390000017748 #17	ENSGT00940000158649 #18	ENSGT00940000160926 #19	ENSGT00390000012913.a #20	ENSGT00410000025695.a #21	ENSGT00390000012198 #22	ENSGT00390000004097.a #23	ENSGT00940000160464 #24	ENSGT00390000000719 #25	ENSGT00390000007227.b #26	ENSGT00390000008152.B.a #27	ENSGT00940000162643 #28	ENSGT01050000244941.B.c	ENSGT00950000183110.a	ENSGT00550000075064	ENSGT00950000182755.b.a.a.b.a.b.a.a.g.a	ENSGT00950000182755.b.a.a.a.a.a.b.d.a	ENSGT00940000154251.A.a.b
Bolivian squirrel monkey	MODERN SPECIES	199	COPE (ENSSBOG00000014113) #7	DDX49 (ENSSBOG00000035812) #8	HOMER3 (ENSSBOG00000030722) #9	SUGP2 (ENSSBOG00000020629) #10	ENSSBOG00000024227 #11	SLC25A42 (ENSSBOG00000024288) #12	TMEM161A (ENSSBOG00000031066) #13	MEF2B (ENSSBOG00000024550) #14	BORCS8 (ENSSBOG00000022945) #15	RFXANK (ENSSBOG00000022019) #16	NR2C2AP (ENSSBOG00000031337) #17	NCAN (ENSSBOG00000033005) #18	HAPLN4 (ENSSBOG00000028603) #19	TM6SF2 (ENSSBOG00000031897) #20	SUGP1 (ENSSBOG00000020160) #21	MAU2 (ENSSBOG00000034577) #22	GATAD2A (ENSSBOG00000029481) #23	TSSK6 (ENSSBOG00000018199) #24	NDUFA13 (ENSSBOG00000019126) #25	YJEFN3 (ENSSBOG00000021793) #26	CILP2 (ENSSBOG00000026211) #27	ENSSBOG00000031282 #28	LPAR2 (ENSSBOG00000029005)	GMIP (ENSSBOG00000036091)	ATP13A1 (ENSSBOG00000033381)	ZNF101 (ENSSBOG00000033857)	ZNF14 (ENSSBOG00000029592)	ENSSBOG00000024223
Capuchin	MODERN SPECIES	280	COPE (ENSCCAG00000036516) #7	DDX49 (ENSCCAG00000036092) #8	HOMER3 (ENSCCAG00000024819) #9	SUGP2 (ENSCCAG00000023178) #10	ARMC6 (ENSCCAG00000027993) #11	SLC25A42 (ENSCCAG00000028461) #12	ENSCCAG00000034387 #13	MEF2B (ENSCCAG00000025516) #14	BORCS8 (ENSCCAG00000026464) #15	RFXANK (ENSCCAG00000034756) #16	NR2C2AP (ENSCCAG00000034992) #17	NCAN (ENSCCAG00000029973) #18	HAPLN4 (ENSCCAG00000030280) #19	TM6SF2 (ENSCCAG00000030646) #20	SUGP1 (ENSCCAG00000024177) #21	MAU2 (ENSCCAG00000031923) #22	GATAD2A (ENSCCAG00000036212) #23	TSSK6 (ENSCCAG00000019676) #24	ENSCCAG00000027170 #25	YJEFN3 (ENSCCAG00000036770) #26	CILP2 (ENSCCAG00000025104) #27	PBX4 (ENSCCAG00000028260) #28	LPAR2 (ENSCCAG00000036944)	GMIP (ENSCCAG00000030811)	ATP13A1 (ENSCCAG00000033311)	ZNF101 (ENSCCAG00000032395)	ZNF14 (ENSCCAG00000035187)	ZNF682 (ENSCCAG00000000964)	ENSCCAG00000016414	ENSCCAG00000033064	ENSCCAG00000037566
Mas night monkey	MODERN SPECIES	1353	COPE (ENSANAG00000018604) #7	DDX49 (ENSANAG00000031415) #8	ENSANAG00000020793 #9	SUGP2 (ENSANAG00000027159) #10	ARMC6 (ENSANAG00000025554) #11	SLC25A42 (ENSANAG00000030310) #12	TMEM161A (ENSANAG00000034160) #13	MEF2B (ENSANAG00000020769) #14	BORCS8 (ENSANAG00000034161) #15	RFXANK (ENSANAG00000025466) #16	NR2C2AP (ENSANAG00000035166) #17	ENSANAG00000035988 #18	HAPLN4 (ENSANAG00000024057) #19	TM6SF2 (ENSANAG00000034245) #20	SUGP1 (ENSANAG00000028538) #21	MAU2 (ENSANAG00000026794) #22	GATAD2A (ENSANAG00000038065) #23	TSSK6 (ENSANAG00000020096) #24	NDUFA13 (ENSANAG00000033597) #25	YJEFN3 (ENSANAG00000026506) #26	CILP2 (ENSANAG00000024220) #27	PBX4 (ENSANAG00000032208) #28	ENSANAG00000038455	LPAR2 (ENSANAG00000036455)	GMIP (ENSANAG00000001734)	ATP13A1 (ENSANAG00000033092)	ENSANAG00000000491	ZNF14 (ENSANAG00000032489)	ENSANAG00000002572	ENSANAG00000023146	ENSANAG00000024123
Tarsier	MODERN SPECIES	4863														TM6SF2 (ENSTSYG00000029039) #20	SUGP1 (ENSTSYG00000005329) #21	MAU2 (ENSTSYG00000005181) #22	GATAD2A (ENSTSYG00000000285) #23	TSSK6 (ENSTSYG00000027337) #24	NDUFA13 (ENSTSYG00000012695) #25	YJEFN3 (ENSTSYG00000036056) #26
Strepsirrhini	ANCESTRAL SPECIES	33	ENSGT00390000003478 #7	ENSGT00730000111231 #8	ENSGT00940000158081 #9	ENSGT00410000025695.b #10	ENSGT00390000002913 #11	ENSGT00940000158163 #12	ENSGT00390000000672.a.a #13	ENSGT00940000160699 #14	ENSGT00390000014856 #15	ENSGT00940000160753 #16	ENSGT00390000017748 #17	ENSGT00940000158649 #18	ENSGT00940000160926 #19	ENSGT00390000012913.a #20	ENSGT00410000025695.a.l #21	ENSGT00390000012198 #22	ENSGT00390000004097.a #23	ENSGT00940000160464 #24	ENSGT00390000000719 #25	ENSGT00390000007227.b #26	ENSGT00390000008152.B.a #27	ENSGT00940000162643 #28	ENSGT01050000244941.B.c	ENSGT00950000183110.a	ENSGT00550000075064	ENSGT00950000182755.b.a.a.a.a.a.b.d.a
Bushbaby	MODERN SPECIES	220	COPE (ENSOGAG00000031639) #7	DDX49 (ENSOGAG00000008259) #8	HOMER3 (ENSOGAG00000008261) #9	SUGP2 (ENSOGAG00000024068) #10	ARMC6 (ENSOGAG00000007536) #11	SLC25A42 (ENSOGAG00000007251) #12	TMEM161A (ENSOGAG00000015720) #13	MEF2B (ENSOGAG00000001694) #14	BORCS8 (ENSOGAG00000028427) #15	RFXANK (ENSOGAG00000010950) #16	NR2C2AP (ENSOGAG00000033463) #17	NCAN (ENSOGAG00000010954) #18	HAPLN4 (ENSOGAG00000009972) #19	TM6SF2 (ENSOGAG00000028833) #20	ENSOGAG00000009975 #21	MAU2 (ENSOGAG00000009979) #22	GATAD2A (ENSOGAG00000007442) #23	TSSK6 (ENSOGAG00000027271) #24	NDUFA13 (ENSOGAG00000007445) #25	YJEFN3 (ENSOGAG00000033582) #26	CILP2 (ENSOGAG00000028615) #27	PBX4 (ENSOGAG00000007450) #28	LPAR2 (ENSOGAG00000034025)	GMIP (ENSOGAG00000002588)	ATP13A1 (ENSOGAG00000002592)	ENSOGAG00000003983	ZNF25 (ENSOGAG00000032242)	ENSOGAG00000034716	ZNF248 (ENSOGAG00000029260)	BMS1 (ENSOGAG00000006511)	RET (ENSOGAG00000011244)
Lemuriformes	ANCESTRAL SPECIES	45	ENSGT00390000003478 #7	ENSGT00730000111231 #8	ENSGT00940000158081 #9	ENSGT00410000025695.b #10	ENSGT00390000002913 #11	ENSGT00940000158163 #12	ENSGT00390000000672.a.a #13	ENSGT00940000160699 #14	ENSGT00390000014856 #15	ENSGT00940000160753 #16	ENSGT00390000017748 #17	ENSGT00940000158649 #18	ENSGT00940000160926 #19	ENSGT00390000012913.a #20	ENSGT00410000025695.a.l #21	ENSGT00390000012198 #22	ENSGT00390000004097.a #23	ENSGT00940000160464 #24	ENSGT00390000000719 #25	ENSGT00390000007227.b #26	ENSGT00390000008152.B.a #27	ENSGT00940000162643 #28	ENSGT01050000244941.B.c	ENSGT00950000183110.a	ENSGT00550000075064	ENSGT00950000182755.b.a.a.a.a.a.b.d.a
Lemuriformes_a	ANCESTRAL SPECIES	65	ENSGT00390000003478 #7	ENSGT00730000111231 #8	ENSGT00940000158081 #9	ENSGT00410000025695.b #10	ENSGT00390000002913 #11	ENSGT00940000158163 #12	ENSGT00390000000672.a.a #13	ENSGT00940000160699 #14	ENSGT00390000014856 #15	ENSGT00940000160753 #16	ENSGT00390000017748 #17	ENSGT00940000158649 #18	ENSGT00940000160926 #19	ENSGT00390000012913.a #20	ENSGT00410000025695.a.l #21	ENSGT00390000012198 #22	ENSGT00390000004097.a #23	ENSGT00940000160464 #24	ENSGT00390000000719 #25	ENSGT00390000007227.b #26	ENSGT00390000008152.B.a #27	ENSGT00940000162643 #28	ENSGT01050000244941.B.c	ENSGT00950000183110.a	ENSGT00550000075064	ENSGT00950000182755.b.a.a.a.a.a.b.d.a
Greater bamboo lemur	MODERN SPECIES	392	COPE (ENSPSMG00000001405) #7	DDX49 (ENSPSMG00000001520) #8	HOMER3 (ENSPSMG00000001606) #9	SUGP2 (ENSPSMG00000001742) #10	ARMC6 (ENSPSMG00000001861) #11	SLC25A42 (ENSPSMG00000001893) #12	TMEM161A (ENSPSMG00000001938) #13	MEF2B (ENSPSMG00000001996) #14	BORCS8 (ENSPSMG00000002009) #15	RFXANK (ENSPSMG00000002047) #16	NR2C2AP (ENSPSMG00000002131) #17	NCAN (ENSPSMG00000002186) #18	HAPLN4 (ENSPSMG00000002199) #19	TM6SF2 (ENSPSMG00000002208) #20	SUGP1 (ENSPSMG00000002255) #21	MAU2 (ENSPSMG00000002309) #22	GATAD2A (ENSPSMG00000002335) #23	TSSK6 (ENSPSMG00000002343) #24	NDUFA13 (ENSPSMG00000002354) #25	YJEFN3 (ENSPSMG00000002364) #26	CILP2 (ENSPSMG00000002378) #27	ENSPSMG00000002390	PBX4 (ENSPSMG00000002398) #28	LPAR2 (ENSPSMG00000002408)	GMIP (ENSPSMG00000002524)
Coquerels sifaka	MODERN SPECIES	589	COPE (ENSPCOG00000015758) #7	DDX49 (ENSPCOG00000024973) #8	HOMER3 (ENSPCOG00000014798) #9	SUGP2 (ENSPCOG00000016042) #10	ARMC6 (ENSPCOG00000017481) #11	SLC25A42 (ENSPCOG00000026001) #12	TMEM161A (ENSPCOG00000012683) #13	MEF2B (ENSPCOG00000024251) #14	BORCS8 (ENSPCOG00000016887) #15	RFXANK (ENSPCOG00000019783) #16	NR2C2AP (ENSPCOG00000023079) #17	NCAN (ENSPCOG00000015066) #18	HAPLN4 (ENSPCOG00000023645) #19	TM6SF2 (ENSPCOG00000024818) #20	SUGP1 (ENSPCOG00000017524) #21	MAU2 (ENSPCOG00000020236) #22	GATAD2A (ENSPCOG00000019794) #23	TSSK6 (ENSPCOG00000012813) #24	NDUFA13 (ENSPCOG00000015544) #25	YJEFN3 (ENSPCOG00000028351) #26	CILP2 (ENSPCOG00000016451) #27	PBX4 (ENSPCOG00000016827) #28	LPAR2 (ENSPCOG00000020323)	GMIP (ENSPCOG00000026022)	ATP13A1 (ENSPCOG00000020533)	ZNF14 (ENSPCOG00000028861)
Mouse lemur	MODERN SPECIES	16	KANK2 (ENSMICG00000004036)	ANGPTL8 (ENSMICG00000042533)	DOCK6 (ENSMICG00000004040)	TSPAN16 (ENSMICG00000042148)	RAB3D (ENSMICG00000031435)	TMEM205 (ENSMICG00000044601)	CCDC159 (ENSMICG00000004075)	PLPPR2 (ENSMICG00000036197)	SWSAP1 (ENSMICG00000005683)	EPOR (ENSMICG00000034457)	RGL3 (ENSMICG00000009876)	ODAD3 (ENSMICG00000009897)	PRKCSH (ENSMICG00000009913)	ELAVL3 (ENSMICG00000016528)	ENSMICG00000047505 #21	MAU2 (ENSMICG00000015603) #22	GATAD2A (ENSMICG00000015636) #23	TSSK6 (ENSMICG00000031087) #24	NDUFA13 (ENSMICG00000027711) #25	YJEFN3 (ENSMICG00000043804) #26	CILP2 (ENSMICG00000038618) #27	PBX4 (ENSMICG00000005939) #28	LPAR2 (ENSMICG00000047382)	GMIP (ENSMICG00000005944)	ATP13A1 (ENSMICG00000005954)	ECSIT (ENSMICG00000043164)	CNN1 (ENSMICG00000011674)	ELOF1 (ENSMICG00000011684)	ACP5 (ENSMICG00000007032)	ENSMICG00000038248	ENSMICG00000041761
Laurasiatheria	ANCESTRAL SPECIES	15	ENSGT00390000003478 #7	ENSGT00730000111231 #8	ENSGT00940000158081 #9	ENSGT00410000025695.b #10	ENSGT00390000002913 #11	ENSGT00940000158163 #12	ENSGT00390000000672.a.a #13	ENSGT00940000160699 #14	ENSGT00390000014856 #15	ENSGT00940000160753 #16	ENSGT00390000017748 #17	ENSGT00940000158649 #18	ENSGT00940000160926 #19	ENSGT00390000012913.a #20	ENSGT00410000025695.a #21	ENSGT00390000012198 #22	ENSGT00390000004097.a #23	ENSGT01090000261752	ENSGT00940000160464 #24	ENSGT00390000000719 #25	ENSGT00960000189525	ENSGT00390000007227.b #26	ENSGT00390000008152.B.a #27	ENSGT00940000162643 #28	ENSGT01050000244941.B.c	ENSGT00950000183110.a	ENSGT00550000075064
Laurasiatheria_a	ANCESTRAL SPECIES	19	ENSGT00390000003478 #7	ENSGT00730000111231 #8	ENSGT00940000158081 #9	ENSGT00410000025695.b #10	ENSGT00390000002913 #11	ENSGT00940000158163 #12	ENSGT00390000000672.a.a #13	ENSGT00940000160699 #14	ENSGT00390000014856 #15	ENSGT00940000160753 #16	ENSGT00390000017748 #17	ENSGT00940000158649 #18	ENSGT00940000160926 #19	ENSGT00390000012913.a #20	ENSGT00410000025695.a #21	ENSGT00390000012198 #22	ENSGT00390000004097.a #23	ENSGT01090000261752	ENSGT00940000160464 #24	ENSGT00390000000719 #25	ENSGT00960000189525	ENSGT00390000007227.b #26	ENSGT00390000008152.B.a #27	ENSGT00940000162643 #28	ENSGT01050000244941.B.c	ENSGT00950000183110.a	ENSGT00550000075064
Artiodactyla	ANCESTRAL SPECIES	22	ENSGT00390000003478 #7	ENSGT00730000111231 #8	ENSGT00940000158081 #9	ENSGT00410000025695.b #10	ENSGT00390000002913 #11	ENSGT00940000158163 #12	ENSGT00390000000672.a.a #13	ENSGT00940000160699 #14	ENSGT00390000014856 #15	ENSGT00940000160753 #16	ENSGT00390000017748 #17	ENSGT00940000158649 #18	ENSGT00940000160926 #19	ENSGT00390000012913.a #20	ENSGT00410000025695.a #21	ENSGT00390000012198 #22	ENSGT00390000004097.a #23	ENSGT00940000160464 #24	ENSGT00390000000719 #25	ENSGT00390000007227.b #26	ENSGT00390000008152.B.a #27	ENSGT00940000162643.a #28	ENSGT01050000244941.B.c	ENSGT00950000183110.a	ENSGT00550000075064
Artiodactyla_a	ANCESTRAL SPECIES	23	ENSGT00390000003478 #7	ENSGT00730000111231 #8	ENSGT00940000158081 #9	ENSGT00410000025695.b #10	ENSGT00390000002913 #11	ENSGT00940000158163 #12	ENSGT00390000000672.a.a #13	ENSGT00940000160699 #14	ENSGT00390000014856 #15	ENSGT00940000160753 #16	ENSGT00390000017748 #17	ENSGT00940000158649 #18	ENSGT00940000160926 #19	ENSGT00390000012913.a #20	ENSGT00410000025695.a #21	ENSGT00390000012198 #22	ENSGT00390000004097.a #23	ENSGT00940000160464 #24	ENSGT00390000000719 #25	ENSGT00390000007227.b #26	ENSGT00390000008152.B.a #27	ENSGT00940000162643.a #28	ENSGT01050000244941.B.c	ENSGT00950000183110.a	ENSGT00550000075064
Artiodactyla_b	ANCESTRAL SPECIES	23	ENSGT00390000003478 #7	ENSGT00730000111231 #8	ENSGT00940000158081 #9	ENSGT00410000025695.b #10	ENSGT00390000002913 #11	ENSGT00940000158163 #12	ENSGT00390000000672.a.a #13	ENSGT00940000160699 #14	ENSGT00390000014856 #15	ENSGT00940000160753 #16	ENSGT00390000017748 #17	ENSGT00940000158649 #18	ENSGT00940000160926 #19	ENSGT00390000012913.a #20	ENSGT00410000025695.a #21	ENSGT00390000012198 #22	ENSGT00390000004097.a #23	ENSGT00940000160464 #24	ENSGT00390000000719 #25	ENSGT00390000007227.b #26	ENSGT00390000008152.B.a #27	ENSGT00940000162643.a #28	ENSGT01050000244941.B.c	ENSGT00950000183110.a	ENSGT00550000075064
Cetacea	ANCESTRAL SPECIES	1	ENSGT00390000003478 #7	ENSGT00730000111231 #8	ENSGT00940000158081 #9	ENSGT00410000025695.b #10	ENSGT00390000002913 #11	ENSGT00940000158163 #12	ENSGT00390000000672.a.a #13	ENSGT00940000160699 #14	ENSGT00390000014856 #15	ENSGT00940000160753 #16	ENSGT00390000017748 #17	ENSGT00940000158649 #18	ENSGT00940000160926 #19	ENSGT00390000012913.a #20	ENSGT00410000025695.a #21	ENSGT00390000012198 #22	ENSGT00390000004097.a #23	ENSGT00940000160464 #24	ENSGT00390000000719 #25	ENSGT00390000007227.b #26	ENSGT00390000008152.B.a #27	ENSGT00940000162643.a #28	ENSGT01050000244941.B.c	ENSGT00950000183110.a	ENSGT00550000075064	ENSGT00940000162084	ENSGT00950000183216.d.a.a.b.a.a.b.b.a.a	ENSGT00950000183216.d.a.a.b.a.a.a.b.b	ENSGT00950000183069.b	ENSGT00940000163783	ENSGT00940000162241
Odontoceti	ANCESTRAL SPECIES	1	ENSGT00390000003478 #7	ENSGT00730000111231 #8	ENSGT00940000158081 #9	ENSGT00410000025695.b #10	ENSGT00390000002913 #11	ENSGT00940000158163 #12	ENSGT00390000000672.a.a #13	ENSGT00940000160699 #14	ENSGT00390000014856 #15	ENSGT00940000160753 #16	ENSGT00390000017748 #17	ENSGT00940000158649 #18	ENSGT00940000160926 #19	ENSGT00390000012913.a #20	ENSGT00410000025695.a #21	ENSGT00390000012198 #22	ENSGT00390000004097.a #23	ENSGT00940000160464 #24	ENSGT00390000000719 #25	ENSGT00390000007227.b #26	ENSGT00390000008152.B.a #27	ENSGT00940000162643.a #28	ENSGT01050000244941.B.c	ENSGT00950000183110.a	ENSGT00550000075064	ENSGT00940000163783	ENSGT00940000162241	ENSGT00940000162532	ENSGT00940000163146	ENSGT00940000154619.g.b.a.a	ENSGT00940000163044
Odontoceti_a	ANCESTRAL SPECIES	1	ENSGT00390000003478 #7	ENSGT00730000111231 #8	ENSGT00940000158081 #9	ENSGT00410000025695.b #10	ENSGT00390000002913 #11	ENSGT00940000158163 #12	ENSGT00390000000672.a.a #13	ENSGT00940000160699 #14	ENSGT00390000014856 #15	ENSGT00940000160753 #16	ENSGT00390000017748 #17	ENSGT00940000158649 #18	ENSGT00940000160926 #19	ENSGT00390000012913.a #20	ENSGT00410000025695.a #21	ENSGT00390000012198 #22	ENSGT00390000004097.a #23	ENSGT00940000160464 #24	ENSGT00390000000719.g #25	ENSGT00390000007227.b #26	ENSGT00390000008152.B.a #27	ENSGT00940000162643.a #28	ENSGT01050000244941.B.c	ENSGT00950000183110.a	ENSGT00550000075064	ENSGT00940000162241	ENSGT00940000162532	ENSGT00940000163783	ENSGT00440000039287	ENSGT00950000182755.b.a.a.a.a.a.a.a.b.b.a.a.b	ENSGT01030000234638.b.a.a
Odontoceti_b	ANCESTRAL SPECIES	1	ENSGT00390000003478 #7	ENSGT00730000111231 #8	ENSGT00940000158081 #9	ENSGT00410000025695.b #10	ENSGT00390000002913 #11	ENSGT00940000158163 #12	ENSGT00390000000672.a.a #13	ENSGT00940000160699 #14	ENSGT00390000014856 #15	ENSGT00940000160753 #16	ENSGT00390000017748 #17	ENSGT00940000158649 #18	ENSGT00940000160926 #19	ENSGT00390000012913.a #20	ENSGT00410000025695.a #21	ENSGT00390000012198 #22	ENSGT00390000004097.a #23	ENSGT00940000160464 #24	ENSGT00390000000719.g #25	ENSGT00390000007227.b #26	ENSGT00390000008152.B.a #27	ENSGT00390000018299.eb.a	ENSGT00940000162643.a #28	ENSGT01050000244941.B.c	ENSGT00950000183110.a	ENSGT00550000075064	ENSGT00940000162241	ENSGT00940000162532	ENSGT00940000163783	ENSGT00440000039287	ENSGT00950000182755.b.a.a.a.a.a.a.a.b.b.a.a.b
Monodontidae	ANCESTRAL SPECIES	17	ENSGT00390000003478 #7	ENSGT00730000111231 #8	ENSGT00940000158081 #9	ENSGT00410000025695.b #10	ENSGT00390000002913 #11	ENSGT00940000158163 #12	ENSGT00390000000672.a.a #13	ENSGT00940000160699 #14	ENSGT00390000014856 #15	ENSGT00940000160753 #16	ENSGT00390000017748 #17	ENSGT00940000158649 #18	ENSGT00940000160926 #19	ENSGT00390000012913.a #20	ENSGT00410000025695.a #21	ENSGT00390000012198 #22	ENSGT00390000004097.a #23	ENSGT00940000160464 #24	ENSGT00390000000719.g #25	ENSGT00390000007227.b #26	ENSGT00390000008152.B.a #27	ENSGT00390000018299.eb.a	ENSGT00940000162643.a #28	ENSGT01050000244941.B.c	ENSGT00950000183110.a	ENSGT00550000075064	ENSGT00940000162241	ENSGT00940000162532	ENSGT00940000163783	ENSGT00440000039287	ENSGT00950000182755.b.a.a.a.a.a.a.a.b.b.a.a.b
Beluga whale	MODERN SPECIES	27	COPE (ENSDLEG00000006169) #7	DDX49 (ENSDLEG00000006176) #8	HOMER3 (ENSDLEG00000006185) #9	SUGP2 (ENSDLEG00000006190) #10	ARMC6 (ENSDLEG00000006199) #11	SLC25A42 (ENSDLEG00000006206) #12	TMEM161A (ENSDLEG00000006213) #13	MEF2B (ENSDLEG00000006219) #14	ENSDLEG00000006226	RFXANK (ENSDLEG00000006230) #16	ENSDLEG00000006238 #17	NCAN (ENSDLEG00000006241) #18	HAPLN4 (ENSDLEG00000006247) #19	TM6SF2 (ENSDLEG00000009148) #20	SUGP1 (ENSDLEG00000009158) #21	MAU2 (ENSDLEG00000009190) #22	GATAD2A (ENSDLEG00000009307) #23	TSSK6 (ENSDLEG00000009362) #24	ENSDLEG00000009372 #25	YJEFN3 (ENSDLEG00000009396) #26	CILP2 (ENSDLEG00000009413) #27	ENSDLEG00000009459	ENSDLEG00000009478 #28	LPAR2 (ENSDLEG00000009491)	GMIP (ENSDLEG00000009515)	ATP13A1 (ENSDLEG00000009604)	ENSDLEG00000009736	ENSDLEG00000009743	ENSDLEG00000009767	ZNF317 (ENSDLEG00000009793)	ENSDLEG00000009820
Narwhal	MODERN SPECIES	298	COPE (ENSMMNG00015007007) #7	DDX49 (ENSMMNG00015006955) #8	HOMER3 (ENSMMNG00015006915) #9	SUGP2 (ENSMMNG00015006879) #10	ARMC6 (ENSMMNG00015006856) #11	SLC25A42 (ENSMMNG00015006831) #12	TMEM161A (ENSMMNG00015006783) #13	MEF2B (ENSMMNG00015006749) #14	BORCS8 (ENSMMNG00015006726) #15	RFXANK (ENSMMNG00015006700) #16	ENSMMNG00015006667 #17	NCAN (ENSMMNG00015006441) #18	HAPLN4 (ENSMMNG00015006325) #19	TM6SF2 (ENSMMNG00015006300) #20	SUGP1 (ENSMMNG00015006270) #21	MAU2 (ENSMMNG00015006228) #22	GATAD2A (ENSMMNG00015006177) #23	TSSK6 (ENSMMNG00015006158) #24	ENSMMNG00015006145 #25	YJEFN3 (ENSMMNG00015006128) #26	CILP2 (ENSMMNG00015006092) #27	ENSMMNG00015006078	ENSMMNG00015005954 #28	LPAR2 (ENSMMNG00015005899)	GMIP (ENSMMNG00015005835)	ATP13A1 (ENSMMNG00015005783)	IFT20 (ENSMMNG00015005765)	ENSMMNG00015005751	ENSMMNG00015005730	ZNF317 (ENSMMNG00015005671)	ENSMMNG00015005635
Vaquita	MODERN SPECIES	14	CERS1 (ENSPSNG00000002156)	COPE (ENSPSNG00000002124) #7	DDX49 (ENSPSNG00000002062) #8	HOMER3 (ENSPSNG00000002016) #9	SUGP2 (ENSPSNG00000001966) #10	ARMC6 (ENSPSNG00000001939) #11	SLC25A42 (ENSPSNG00000001921) #12	TMEM161A (ENSPSNG00000001898) #13	MEF2B (ENSPSNG00000001853) #14	RFXANK (ENSPSNG00000001779) #16	NR2C2AP (ENSPSNG00000001752) #17	NCAN (ENSPSNG00000001532) #18	HAPLN4 (ENSPSNG00000001367) #19	TM6SF2 (ENSPSNG00000001343) #20	SUGP1 (ENSPSNG00000001311) #21	MAU2 (ENSPSNG00000001203) #22	GATAD2A (ENSPSNG00000001112) #23	TSSK6 (ENSPSNG00000001081) #24	YJEFN3 (ENSPSNG00000001047) #26	CILP2 (ENSPSNG00000000993) #27	ENSPSNG00000000965	ENSPSNG00000000937 #28	LPAR2 (ENSPSNG00000000922)	GMIP (ENSPSNG00000000833)	ATP13A1 (ENSPSNG00000000739)	ENSPSNG00000000709	ENSPSNG00000000694	ENSPSNG00000000682	ENSPSNG00000000667	ZNF317 (ENSPSNG00000000646)	ENSPSNG00000000628
Dolphin	MODERN SPECIES	2460													HAPLN4 (ENSTTRG00000009848) #19	TM6SF2 (ENSTTRG00000009863) #20	SUGP1 (ENSTTRG00000009868) #21	MAU2 (ENSTTRG00000009871) #22	GATAD2A (ENSTTRG00000009875) #23	TSSK6 (ENSTTRG00000009879) #24	NDUFA13 (ENSTTRG00000009880) #25	YJEFN3 (ENSTTRG00000009882) #26	CILP2 (ENSTTRG00000009884) #27	PBX4 (ENSTTRG00000009886) #28	LPAR2 (ENSTTRG00000009889)	GMIP (ENSTTRG00000009891)	ATP13A1 (ENSTTRG00000009893)
Sperm whale	MODERN SPECIES	1143																MAU2 (ENSPCTG00005018277) #22
Blue whale	MODERN SPECIES	14	COPE (ENSBMSG00010004064) #7	DDX49 (ENSBMSG00010004039) #8	HOMER3 (ENSBMSG00010003958) #9	SUGP2 (ENSBMSG00010003931) #10	ARMC6 (ENSBMSG00010003914) #11	SLC25A42 (ENSBMSG00010003900) #12	TMEM161A (ENSBMSG00010003877) #13	MEF2B (ENSBMSG00010003849) #14	ENSBMSG00010002783	RFXANK (ENSBMSG00010002771) #16	NR2C2AP (ENSBMSG00010002762) #17	NCAN (ENSBMSG00010002745) #18	HAPLN4 (ENSBMSG00010002737) #19	TM6SF2 (ENSBMSG00010002725) #20	SUGP1 (ENSBMSG00010002719) #21	MAU2 (ENSBMSG00010002666) #22	GATAD2A (ENSBMSG00010002620) #23	TSSK6 (ENSBMSG00010002611) #24	YJEFN3 (ENSBMSG00010002588) #26	CILP2 (ENSBMSG00010002559) #27	ENSBMSG00010002498 #28	ENSBMSG00010002474	LPAR2 (ENSBMSG00010002465)	GMIP (ENSBMSG00010002416)	ATP13A1 (ENSBMSG00010002333)	ENSBMSG00010002309	OR7C1 (ENSBMSG00010002299)	ENSBMSG00010002290	ENSBMSG00010002274	ENSBMSG00010002262	ZNF317 (ENSBMSG00010002252)
Pecora	ANCESTRAL SPECIES		ENSGT00390000003478 #7	ENSGT00730000111231 #8	ENSGT00940000158081 #9	ENSGT00410000025695.b #10	ENSGT00390000002913 #11	ENSGT00940000158163 #12	ENSGT00390000000672.a.a #13	ENSGT00940000160699 #14	ENSGT00390000014856 #15	ENSGT00940000160753 #16	ENSGT00390000017748 #17	ENSGT00940000158649 #18	ENSGT00940000160926 #19	ENSGT00390000012913.a #20	ENSGT00410000025695.a #21	ENSGT00390000012198 #22	ENSGT00390000004097.a #23	ENSGT00940000160464 #24	ENSGT00390000000719 #25	ENSGT00390000007227.b #26	ENSGT00390000008152.B.a #27	ENSGT00940000162643.a #28	ENSGT01050000244941.B.c	ENSGT00950000183110.a	ENSGT00550000075064	ENSGT00730000111029.e.a	ENSGT00940000162570	ENSGT00940000159380	ENSGT00950000182843.b	ENSGT00940000154494.a.b	ENSGT00940000159618
Percora_a	ANCESTRAL SPECIES		ENSGT00390000003478 #7	ENSGT00730000111231 #8	ENSGT00940000158081 #9	ENSGT00410000025695.b #10	ENSGT00390000002913 #11	ENSGT00940000158163 #12	ENSGT00390000000672.a.a #13	ENSGT00940000160699 #14	ENSGT00390000014856 #15	ENSGT00940000160753 #16	ENSGT00390000017748 #17	ENSGT00940000158649 #18	ENSGT00940000160926 #19	ENSGT00390000012913.a #20	ENSGT00410000025695.a #21	ENSGT00390000012198 #22	ENSGT00390000004097.a #23	ENSGT00940000160464 #24	ENSGT00390000000719 #25	ENSGT00390000007227.b #26	ENSGT00390000008152.B.a #27	ENSGT00940000162643.a #28	ENSGT01050000244941.B.c	ENSGT00950000183110.a	ENSGT00550000075064	ENSGT00730000111029.e.a	ENSGT00940000162570	ENSGT00940000159380	ENSGT00950000182843.b	ENSGT00940000154494.a.b	ENSGT00940000159618
Bovidae	ANCESTRAL SPECIES		ENSGT00390000003478 #7	ENSGT00730000111231 #8	ENSGT00940000158081 #9	ENSGT00410000025695.b #10	ENSGT00390000002913 #11	ENSGT00940000158163 #12	ENSGT00390000000672.a.a #13	ENSGT00940000160699 #14	ENSGT00390000014856 #15	ENSGT00940000160753 #16	ENSGT00390000017748 #17	ENSGT00940000158649 #18	ENSGT00940000160926 #19	ENSGT00390000012913.a #20	ENSGT00410000025695.a #21	ENSGT00390000012198 #22	ENSGT00390000004097.a #23	ENSGT00940000160464 #24	ENSGT00390000000719 #25	ENSGT00390000007227.b #26	ENSGT00390000008152.B.a #27	ENSGT00940000162643.a #28	ENSGT01050000244941.B.c	ENSGT00950000183110.a	ENSGT00550000075064	ENSGT00730000111029.e.a	ENSGT00940000162570	ENSGT00940000159380	ENSGT00950000182843.b	ENSGT00940000154494.a.b	ENSGT00940000159618
Caprinae	ANCESTRAL SPECIES	32	ENSGT00390000003478 #7	ENSGT00730000111231 #8	ENSGT00940000158081 #9	ENSGT00410000025695.b #10	ENSGT00390000002913 #11	ENSGT00940000158163 #12	ENSGT00390000000672.a.a #13	ENSGT00940000160699 #14	ENSGT00390000014856 #15	ENSGT00940000160753 #16	ENSGT00390000017748 #17	ENSGT00940000158649 #18	ENSGT00940000160926 #19	ENSGT00390000012913.a #20	ENSGT00410000025695.a #21	ENSGT00390000012198 #22	ENSGT00390000004097.a #23	ENSGT00940000160464 #24	ENSGT00390000000719 #25	ENSGT00390000007227.b #26	ENSGT00390000008152.B.a #27	ENSGT00940000162643.a #28	ENSGT01050000244941.B.c	ENSGT00950000183110.a	ENSGT00550000075064	ENSGT00730000111029.e.a	ENSGT00940000162570	ENSGT00940000159380	ENSGT00950000182843.b	ENSGT00940000154494.a.b	ENSGT00940000159618
Rambouillet Sheep	MODERN SPECIES	21	UPF1 (ENSOARG00020003352)	CERS1 (ENSOARG00020021615)	DDX49 (ENSOARG00020021548) #8	ENSOARG00020021129 #9	SUGP2 (ENSOARG00020021040) #10	ARMC6 (ENSOARG00020020947) #11	SLC25A42 (ENSOARG00020020909) #12	TMEM161A (ENSOARG00020020857) #13	MEF2B (ENSOARG00020020398) #14	BORCS8 (ENSOARG00020020354) #15	RFXANK (ENSOARG00020020308) #16	NR2C2AP (ENSOARG00020020240) #17	HAPLN4 (ENSOARG00020020166) #19	TM6SF2 (ENSOARG00020020089) #20	SUGP1 (ENSOARG00020019993) #21	MAU2 (ENSOARG00020019838) #22	GATAD2A (ENSOARG00020019767) #23	TSSK6 (ENSOARG00020019749) #24	NDUFA13 (ENSOARG00020019709) #25	YJEFN3 (ENSOARG00020019633) #26	CILP2 (ENSOARG00020019527) #27	LPAR2 (ENSOARG00020019376)	GMIP (ENSOARG00020019185)	ATP13A1 (ENSOARG00020019002)	ENSOARG00020018960	ZNF354B (ENSOARG00020018905)	SNAP47 (ENSOARG00020018819)	PRSS38 (ENSOARG00020018766)	WNT9A (ENSOARG00020018708)	ENSOARG00020018666	WNT3A (ENSOARG00020018613)
Goat	MODERN SPECIES	26	COPE (ENSCHIG00000019197) #7	DDX49 (ENSCHIG00000019910) #8	HOMER3 (ENSCHIG00000013425) #9	SUGP2 (ENSCHIG00000000571) #10	ARMC6 (ENSCHIG00000022745) #11	SLC25A42 (ENSCHIG00000017224) #12	TMEM161A (ENSCHIG00000015703) #13	MEF2B (ENSCHIG00000009022) #14	BORCS8 (ENSCHIG00000023514) #15	RFXANK (ENSCHIG00000009697) #16	NR2C2AP (ENSCHIG00000026754) #17	NCAN (ENSCHIG00000023523) #18	HAPLN4 (ENSCHIG00000017398) #19	TM6SF2 (ENSCHIG00000009497) #20	SUGP1 (ENSCHIG00000024169) #21	MAU2 (ENSCHIG00000018574) #22	GATAD2A (ENSCHIG00000022449) #23	TSSK6 (ENSCHIG00000012857) #24	NDUFA13 (ENSCHIG00000005106) #25	YJEFN3 (ENSCHIG00000022695) #26	CILP2 (ENSCHIG00000016599) #27	PBX4 (ENSCHIG00000020490) #28	LPAR2 (ENSCHIG00000026267)	GMIP (ENSCHIG00000006935)	ATP13A1 (ENSCHIG00000027146)	ENSCHIG00000027175	ZNF354B (ENSCHIG00000024384)	JMJD4 (ENSCHIG00000001908)	SNAP47 (ENSCHIG00000025042)	ENSCHIG00000004906	WNT9A (ENSCHIG00000009523)
Bovinae	ANCESTRAL SPECIES	34	ENSGT00390000003478 #7	ENSGT00730000111231 #8	ENSGT00940000158081 #9	ENSGT00410000025695.b #10	ENSGT00390000002913 #11	ENSGT00940000158163 #12	ENSGT00390000000672.a.a #13	ENSGT00940000160699 #14	ENSGT00390000014856 #15	ENSGT00940000160753 #16	ENSGT00390000017748 #17	ENSGT00940000158649 #18	ENSGT00940000160926 #19	ENSGT00390000012913.a #20	ENSGT00410000025695.a #21	ENSGT00390000012198 #22	ENSGT00390000004097.a #23	ENSGT00940000160464 #24	ENSGT00390000000719 #25	ENSGT00390000007227.b #26	ENSGT00390000008152.B.a #27	ENSGT00940000162643.a #28	ENSGT01050000244941.B.c	ENSGT00950000183110.a	ENSGT00550000075064	ENSGT00730000111029.e.a	ENSGT00940000162570	ENSGT00940000159380	ENSGT00950000182843.b	ENSGT00940000154494.a.b	ENSGT00940000159618
Bos	ANCESTRAL SPECIES	34	ENSGT00390000003478 #7	ENSGT00730000111231 #8	ENSGT00940000158081 #9	ENSGT00410000025695.b #10	ENSGT00390000002913 #11	ENSGT00940000158163 #12	ENSGT00390000000672.a.a #13	ENSGT00940000160699 #14	ENSGT00390000014856 #15	ENSGT00940000160753 #16	ENSGT00390000017748 #17	ENSGT00940000158649 #18	ENSGT00940000160926 #19	ENSGT00390000012913.a #20	ENSGT00410000025695.a #21	ENSGT00390000012198 #22	ENSGT00390000004097.a #23	ENSGT00940000160464 #24	ENSGT00390000000719 #25	ENSGT00390000007227.b #26	ENSGT00390000008152.B.a #27	ENSGT00940000162643.a #28	ENSGT01050000244941.B.c	ENSGT00950000183110.a	ENSGT00550000075064	ENSGT00730000111029.e.a	ENSGT00940000162570	ENSGT00940000159380	ENSGT00950000182843.b	ENSGT00940000154494.a.b	ENSGT00940000159618
Bos_a	ANCESTRAL SPECIES	29	ENSGT00390000003478 #7	ENSGT00730000111231 #8	ENSGT00940000158081 #9	ENSGT00410000025695.b #10	ENSGT00390000002913 #11	ENSGT00940000158163 #12	ENSGT00390000000672.a.a #13	ENSGT00940000160699 #14	ENSGT00390000014856 #15	ENSGT00940000160753 #16	ENSGT00390000017748 #17	ENSGT00940000158649 #18	ENSGT00940000160926 #19	ENSGT00390000012913.a #20	ENSGT00410000025695.a #21	ENSGT00390000012198 #22	ENSGT00390000004097.a #23	ENSGT00940000160464 #24	ENSGT00390000007227.b #26	ENSGT00390000008152.B.a #27	ENSGT00940000162643.a #28	ENSGT01050000244941.B.c	ENSGT00950000183110.a	ENSGT00550000075064	ENSGT00940000162570	ENSGT00940000159380	ENSGT00950000182843.b	ENSGT00940000154494.a.b	ENSGT00940000159618	ENSGT00940000160510	ENSGT00950000183080.a.b.a.b.b
Domestic yak	MODERN SPECIES	27	DDX49 (ENSBGRG00000001122) #8	HOMER3 (ENSBGRG00000001163) #9	ENSBGRG00000001213 #9	SUGP2 (ENSBGRG00000001227) #10	ARMC6 (ENSBGRG00000001271) #11	SLC25A42 (ENSBGRG00000001293) #12	TMEM161A (ENSBGRG00000001322) #13	MEF2B (ENSBGRG00000001435) #14	ENSBGRG00000001503 #15	RFXANK (ENSBGRG00000001549) #16	NR2C2AP (ENSBGRG00000001646) #17	NCAN (ENSBGRG00000001688) #18	HAPLN4 (ENSBGRG00000001768) #19	TM6SF2 (ENSBGRG00000001786) #20	SUGP1 (ENSBGRG00000001817) #21	MAU2 (ENSBGRG00000001879) #22	ENSBGRG00000001911	GATAD2A (ENSBGRG00000001936) #23	TSSK6 (ENSBGRG00000001976) #24	YJEFN3 (ENSBGRG00000002015) #26	CILP2 (ENSBGRG00000002130) #27	PBX4 (ENSBGRG00000002159) #28	LPAR2 (ENSBGRG00000002227)	GMIP (ENSBGRG00000002278)	ATP13A1 (ENSBGRG00000002465)	ENSBGRG00000002896	ZNF354B (ENSBGRG00000002905)	JMJD4 (ENSBGRG00000002925)	SNAP47 (ENSBGRG00000002943)	PRSS38 (ENSBGRG00000002987)	WNT9A (ENSBGRG00000003023)
Wild yak	MODERN SPECIES	2661																MAU2 (ENSBMUG00000019084) #22	GATAD2A (ENSBMUG00000019332) #23	TSSK6 (ENSBMUG00000019390) #24	YJEFN3 (ENSBMUG00000019400) #26	CILP2 (ENSBMUG00000019415) #27	PBX4 (ENSBMUG00000019515) #28	LPAR2 (ENSBMUG00000019563)	GMIP (ENSBMUG00000019714)	ATP13A1 (ENSBMUG00000020253)
Bos_b	ANCESTRAL SPECIES	36	ENSGT00390000003478 #7	ENSGT00730000111231 #8	ENSGT00940000158081 #9	ENSGT00410000025695.b #10	ENSGT00390000002913 #11	ENSGT00940000158163 #12	ENSGT00390000000672.a.a #13	ENSGT00940000160699 #14	ENSGT00390000014856 #15	ENSGT00940000160753 #16	ENSGT00390000017748 #17	ENSGT00940000158649 #18	ENSGT00940000160926 #19	ENSGT00390000012913.a #20	ENSGT00410000025695.a #21	ENSGT00390000012198 #22	ENSGT00390000004097.a #23	ENSGT00940000160464 #24	ENSGT00390000000719 #25	ENSGT00390000007227.b #26	ENSGT00390000008152.B.a #27	ENSGT00940000162643.a #28	ENSGT01050000244941.B.c	ENSGT00950000183110.a	ENSGT00550000075064	ENSGT00730000111029.e.a	ENSGT00940000162570	ENSGT00940000159380	ENSGT00950000182843.b	ENSGT00940000154494.a.b	ENSGT00940000159618
Hybrid Bos Indicus	MODERN SPECIES	26	COPE (ENSBIXG00005012672) #7	DDX49 (ENSBIXG00005012358) #8	HOMER3 (ENSBIXG00005000373) #9	SUGP2 (ENSBIXG00005001278) #10	ARMC6 (ENSBIXG00005012220) #11	SLC25A42 (ENSBIXG00005012191) #12	TMEM161A (ENSBIXG00005007436) #13	MEF2B (ENSBIXG00005012139) #14	BORCS8 (ENSBIXG00005012065) #15	RFXANK (ENSBIXG00005012032) #16	NR2C2AP (ENSBIXG00005011976) #17	NCAN (ENSBIXG00005011939) #18	HAPLN4 (ENSBIXG00005006424) #19	TM6SF2 (ENSBIXG00005011902) #20	SUGP1 (ENSBIXG00005011882) #21	MAU2 (ENSBIXG00005011825) #22	GATAD2A (ENSBIXG00005011721) #23	CILP2 (ENSBIXG00005011569) #27	PBX4 (ENSBIXG00005011533) #28	LPAR2 (ENSBIXG00005011498)	GMIP (ENSBIXG00005011455)	ATP13A1 (ENSBIXG00005011383)	ENSBIXG00005011324	ZNF354B (ENSBIXG00005011307)	ENSBIXG00005000504	JMJD4 (ENSBIXG00005005916)	SNAP47 (ENSBIXG00005011285)	ENSBIXG00005011259	ENSBIXG00005001061	ENSBIXG00005011249	PRSS38 (ENSBIXG00005011238)
Cow	MODERN SPECIES	26	COPE (ENSBTAG00000000810) #7	DDX49 (ENSBTAG00000000811) #8	HOMER3 (ENSBTAG00000000813) #9	SUGP2 (ENSBTAG00000013288) #10	ARMC6 (ENSBTAG00000013291) #11	SLC25A42 (ENSBTAG00000001816) #12	TMEM161A (ENSBTAG00000001817) #13	MEF2B (ENSBTAG00000001818) #14	BORCS8 (ENSBTAG00000025817) #15	RFXANK (ENSBTAG00000001762) #16	NR2C2AP (ENSBTAG00000001763) #17	NCAN (ENSBTAG00000001764) #18	HAPLN4 (ENSBTAG00000001765) #19	TM6SF2 (ENSBTAG00000016042) #20	SUGP1 (ENSBTAG00000006116) #21	MAU2 (ENSBTAG00000006124) #22	GATAD2A (ENSBTAG00000003034) #23	TSSK6 (ENSBTAG00000006649) #24	NDUFA13 (ENSBTAG00000007812) #25	YJEFN3 (ENSBTAG00000014968) #26	CILP2 (ENSBTAG00000014969) #27	PBX4 (ENSBTAG00000009975) #28	LPAR2 (ENSBTAG00000004652)	GMIP (ENSBTAG00000015144)	ATP13A1 (ENSBTAG00000007128)	ENSBTAG00000052161	ZNF354B (ENSBTAG00000017123)	JMJD4 (ENSBTAG00000004191)	SNAP47 (ENSBTAG00000004188)	PRSS38 (ENSBTAG00000013977)	WNT9A (ENSBTAG00000020267)
American bison	MODERN SPECIES	3165	COPE (ENSBBBG00000015595) #7	DDX49 (ENSBBBG00000015616) #8	ENSBBBG00000003467 #9	ENSBBBG00000003456 #9	SUGP2 (ENSBBBG00000003426) #10	ARMC6 (ENSBBBG00000015629) #11	TMEM161A (ENSBBBG00000007455) #13	MEF2B (ENSBBBG00000007138) #14	ENSBBBG00000015701 #15	RFXANK (ENSBBBG00000015745) #16	NR2C2AP (ENSBBBG00000003931) #17	NCAN (ENSBBBG00000003940) #18	HAPLN4 (ENSBBBG00000015855) #19	TM6SF2 (ENSBBBG00000015869) #20	SUGP1 (ENSBBBG00000015892) #21	MAU2 (ENSBBBG00000003961) #22	GATAD2A (ENSBBBG00000015939) #23	TSSK6 (ENSBBBG00000015942) #24	NDUFA13 (ENSBBBG00000015950) #25	YJEFN3 (ENSBBBG00000015957) #26	CILP2 (ENSBBBG00000015975) #27	PBX4 (ENSBBBG00000015984) #28	LPAR2 (ENSBBBG00000015996)	GMIP (ENSBBBG00000016022)	ATP13A1 (ENSBBBG00000003990)	ENSBBBG00000016056	ZNF354B (ENSBBBG00000016063)	JMJD4 (ENSBBBG00000016083)	SNAP47 (ENSBBBG00000007139)	PRSS38 (ENSBBBG00000016108)	WNT9A (ENSBBBG00000016116)
Siberian musk deer	MODERN SPECIES	1231	COPE (ENSMMSG00000022538) #7	DDX49 (ENSMMSG00000022565) #8	HOMER3 (ENSMMSG00000022598) #9	SUGP2 (ENSMMSG00000022643) #10	ARMC6 (ENSMMSG00000022659) #11	SLC25A42 (ENSMMSG00000022673) #12	TMEM161A (ENSMMSG00000016113) #13	MEF2B (ENSMMSG00000016211) #14	BORCS8 (ENSMMSG00000016823) #15	RFXANK (ENSMMSG00000016859) #16	NR2C2AP (ENSMMSG00000016963) #17	NCAN (ENSMMSG00000017015) #18	HAPLN4 (ENSMMSG00000017463) #19	TM6SF2 (ENSMMSG00000017487) #20	SUGP1 (ENSMMSG00000017541) #21	MAU2 (ENSMMSG00000017598) #22	GATAD2A (ENSMMSG00000017683) #23	ENSMMSG00000017748	TSSK6 (ENSMMSG00000017779) #24	ENSMMSG00000017802 #25	YJEFN3 (ENSMMSG00000017864) #26	CILP2 (ENSMMSG00000017925) #27	PBX4 (ENSMMSG00000017955) #28	LPAR2 (ENSMMSG00000018021)	GMIP (ENSMMSG00000018067)	ATP13A1 (ENSMMSG00000018140)
Yarkand deer	MODERN SPECIES	32	CERS1 (ENSCHYG00000015529)	DDX49 (ENSCHYG00000015448) #8	ENSCHYG00000014561 #9	SUGP2 (ENSCHYG00000014360) #10	ARMC6 (ENSCHYG00000014214) #11	SLC25A42 (ENSCHYG00000014137) #12	TMEM161A (ENSCHYG00000013806) #13	MEF2B (ENSCHYG00000013347) #14	BORCS8 (ENSCHYG00000013210) #15	RFXANK (ENSCHYG00000013090) #16	NR2C2AP (ENSCHYG00000013015) #17	NCAN (ENSCHYG00000012951) #18	HAPLN4 (ENSCHYG00000012901) #19	TM6SF2 (ENSCHYG00000012851) #20	SUGP1 (ENSCHYG00000012677) #21	MAU2 (ENSCHYG00000012428) #22	GATAD2A (ENSCHYG00000012277) #23	TSSK6 (ENSCHYG00000012255) #24	NDUFA13 (ENSCHYG00000012188) #25	YJEFN3 (ENSCHYG00000012151) #26	CILP2 (ENSCHYG00000012104) #27	PBX4 (ENSCHYG00000011654) #28	LPAR2 (ENSCHYG00000011542)	GMIP (ENSCHYG00000011272)	ATP13A1 (ENSCHYG00000010816)	ENSCHYG00000010766	ZNF354B (ENSCHYG00000010723)	ENSCHYG00000010707	JMJD4 (ENSCHYG00000010663)	SNAP47 (ENSCHYG00000010619)	PRSS38 (ENSCHYG00000010560)
Camelidae	ANCESTRAL SPECIES	64	ENSGT00390000003478 #7	ENSGT00730000111231 #8	ENSGT00940000158081 #9	ENSGT00410000025695.b #10	ENSGT00390000002913 #11	ENSGT00940000158163 #12	ENSGT00390000000672.a.a #13	ENSGT00940000160699 #14	ENSGT00390000014856 #15	ENSGT00940000160753 #16	ENSGT00390000017748 #17	ENSGT00940000158649 #18	ENSGT00940000160926 #19	ENSGT00390000012913.a #20	ENSGT00410000025695.a #21	ENSGT00390000012198 #22	ENSGT00390000004097.a #23	ENSGT00940000160464 #24	ENSGT00390000007227.b #26	ENSGT00390000008152.B.a #27	ENSGT00940000162643.a #28	ENSGT01050000244941.B.c	ENSGT00950000183110.a	ENSGT00550000075064
Arabian camel	MODERN SPECIES	14	COPE (ENSCDRG00005013441) #7	DDX49 (ENSCDRG00005013373) #8	HOMER3 (ENSCDRG00005013258) #9	SUGP2 (ENSCDRG00005013031) #10	ARMC6 (ENSCDRG00005012979) #11	SLC25A42 (ENSCDRG00005012927) #12	TMEM161A (ENSCDRG00005012779) #13	MEF2B (ENSCDRG00005012755) #14	ENSCDRG00005012691 #15	RFXANK (ENSCDRG00005012616) #16	NR2C2AP (ENSCDRG00005012299) #17	NCAN (ENSCDRG00005012212) #18	HAPLN4 (ENSCDRG00005012163) #19	TM6SF2 (ENSCDRG00005012037) #20	SUGP1 (ENSCDRG00005011946) #21	MAU2 (ENSCDRG00005011821) #22	GATAD2A (ENSCDRG00005011647) #23	TSSK6 (ENSCDRG00005011623) #24	YJEFN3 (ENSCDRG00005011508) #26	CILP2 (ENSCDRG00005011464) #27	PBX4 (ENSCDRG00005011358) #28	LPAR2 (ENSCDRG00005011318)	GMIP (ENSCDRG00005011233)	ATP13A1 (ENSCDRG00005011036)	ATP10B (ENSCDRG00005010580)	ENSCDRG00005010558	GABRB2 (ENSCDRG00005010424)	GABRA6 (ENSCDRG00005010202)	GABRA1 (ENSCDRG00005010066)	GABRG2 (ENSCDRG00005009620)	CCNG1 (ENSCDRG00005009416)
Suina	ANCESTRAL SPECIES	39	ENSGT00390000003478 #7	ENSGT00730000111231 #8	ENSGT00940000158081 #9	ENSGT00410000025695.b #10	ENSGT00390000002913 #11	ENSGT00940000158163 #12	ENSGT00390000000672.a.a #13	ENSGT00940000160699 #14	ENSGT00390000014856 #15	ENSGT00940000160753 #16	ENSGT00390000017748 #17	ENSGT00940000158649 #18	ENSGT00940000160926 #19	ENSGT00390000012913.a #20	ENSGT00410000025695.a #21	ENSGT00390000012198 #22	ENSGT00390000004097.a #23	ENSGT00940000160464 #24	ENSGT00390000000719 #25	ENSGT00390000007227.b #26	ENSGT00390000008152.B.a #27	ENSGT00940000162643.a #28	ENSGT01050000244941.B.c	ENSGT00950000183110.a	ENSGT00550000075064	ENSGT00960000186612.A.m.a	ENSGT00960000186612.A.m.b	ENSGT00530000063632.B	ENSGT00940000162750	ENSGT00940000160338	ENSGT01090000259995.b.a.a.b
Pig	MODERN SPECIES	10	HOMER3 (ENSSSCG00000013919) #9	SUGP2 (ENSSSCG00000025839) #10	ARMC6 (ENSSSCG00000049430) #11	ENSSSCG00000044637	SLC25A42 (ENSSSCG00000013927) #12	TMEM161A (ENSSSCG00000033168) #13	MEF2B (ENSSSCG00000030351) #14	BORCS8 (ENSSSCG00000044084) #15	RFXANK (ENSSSCG00000036310) #16	NR2C2AP (ENSSSCG00000023658) #17	NCAN (ENSSSCG00000032131) #18	HAPLN4 (ENSSSCG00000034887) #19	TM6SF2 (ENSSSCG00000059192) #20	ENSSSCG00000048260	SUGP1 (ENSSSCG00000036970) #21	MAU2 (ENSSSCG00000021664) #22	GATAD2A (ENSSSCG00000013938) #23	TSSK6 (ENSSSCG00000013937) #24	NDUFA13 (ENSSSCG00000056961) #25	YJEFN3 (ENSSSCG00000013935) #26	CILP2 (ENSSSCG00000013934) #27	PBX4 (ENSSSCG00000013933) #28	LPAR2 (ENSSSCG00000013932)	GMIP (ENSSSCG00000013931)	ATP13A1 (ENSSSCG00000013930)	ENSSSCG00000061333	ENSSSCG00000038707	ENSSSCG00000043984	ENSSSCG00000033438	MGAT1 (ENSSSCG00000014538)	ZFP62 (ENSSSCG00000014539)
Chacoan peccary	MODERN SPECIES	769	COPE (ENSCWAG00000019578) #7	DDX49 (ENSCWAG00000019644) #8	HOMER3 (ENSCWAG00000019671) #9	SUGP2 (ENSCWAG00000019735) #10	ARMC6 (ENSCWAG00000019757) #11	SLC25A42 (ENSCWAG00000019779) #12	TMEM161A (ENSCWAG00000019820) #13	MEF2B (ENSCWAG00000019951) #14	BORCS8 (ENSCWAG00000019997) #15	RFXANK (ENSCWAG00000020046) #16	NR2C2AP (ENSCWAG00000007805) #17	NCAN (ENSCWAG00000007920) #18	HAPLN4 (ENSCWAG00000008277) #19	TM6SF2 (ENSCWAG00000008344) #20	SUGP1 (ENSCWAG00000008452) #21	MAU2 (ENSCWAG00000008506) #22	GATAD2A (ENSCWAG00000008702) #23	TSSK6 (ENSCWAG00000008796) #24	NDUFA13 (ENSCWAG00000008819) #25	YJEFN3 (ENSCWAG00000008846) #26	CILP2 (ENSCWAG00000008907) #27	PBX4 (ENSCWAG00000008974) #28	LPAR2 (ENSCWAG00000009001)	GMIP (ENSCWAG00000009054)	ATP13A1 (ENSCWAG00000009122)	ENSCWAG00000009299	ENSCWAG00000009337	MGAT1 (ENSCWAG00000009379)	ZFP62 (ENSCWAG00000009392)	BTNL9 (ENSCWAG00000009419)	ENSCWAG00000009574
Laurasiatheria_b	ANCESTRAL SPECIES	18	ENSGT00390000003478 #7	ENSGT00730000111231 #8	ENSGT00940000158081 #9	ENSGT00410000025695.b #10	ENSGT00390000002913 #11	ENSGT00940000158163 #12	ENSGT00390000000672.a.a #13	ENSGT00940000160699 #14	ENSGT00390000014856 #15	ENSGT00940000160753 #16	ENSGT00390000017748 #17	ENSGT00940000158649 #18	ENSGT00940000160926 #19	ENSGT00390000012913.a #20	ENSGT00410000025695.a #21	ENSGT00390000012198 #22	ENSGT00390000004097.a #23	ENSGT01090000261752	ENSGT00940000160464 #24	ENSGT00390000000719 #25	ENSGT00960000189525	ENSGT00390000007227.b #26	ENSGT00390000008152.B.a #27	ENSGT00940000162643 #28	ENSGT01050000244941.B.c	ENSGT00950000183110.a	ENSGT00550000075064
Carnivora	ANCESTRAL SPECIES	6	ENSGT00390000003478 #7	ENSGT00730000111231 #8	ENSGT00940000158081 #9	ENSGT00410000025695.b #10	ENSGT00390000002913 #11	ENSGT00940000158163 #12	ENSGT00390000000672.a.a #13	ENSGT00940000160699 #14	ENSGT00390000014856 #15	ENSGT00940000160753 #16	ENSGT00390000017748 #17	ENSGT00940000158649 #18	ENSGT00940000160926 #19	ENSGT00390000012913.a #20	ENSGT00410000025695.a #21	ENSGT00390000012198 #22	ENSGT00390000004097.a #23	ENSGT00940000160464 #24	ENSGT00390000000719 #25	ENSGT00960000189525	ENSGT00390000007227.b #26	ENSGT00390000008152.B.a #27	ENSGT00940000162643 #28	ENSGT01050000244941.B.c	ENSGT00950000183110.a	ENSGT00550000075064	ENSGT00940000163095.b	ENSGT00940000153104.e.a.a.b	ENSGT00390000001296	ENSGT00940000156463	ENSGT00390000012690
Caniformia	ANCESTRAL SPECIES	4	ENSGT00390000003478 #7	ENSGT00730000111231 #8	ENSGT00940000158081 #9	ENSGT00410000025695.b #10	ENSGT00390000002913 #11	ENSGT00940000158163 #12	ENSGT00390000000672.a.a #13	ENSGT00940000160699 #14	ENSGT00390000014856 #15	ENSGT00940000160753 #16	ENSGT00390000017748 #17	ENSGT00940000158649 #18	ENSGT00940000160926 #19	ENSGT00390000012913.a #20	ENSGT00410000025695.a #21	ENSGT00390000012198 #22	ENSGT00390000004097.a #23	ENSGT00940000160464 #24	ENSGT00390000000719 #25	ENSGT00960000189525	ENSGT00390000007227.b #26	ENSGT00390000008152.B.a #27	ENSGT00940000162643 #28	ENSGT01050000244941.B.c	ENSGT00950000183110.a	ENSGT00550000075064	ENSGT00940000163095.b	ENSGT00940000153104.e.a.a.b	ENSGT00390000001296	ENSGT00940000156463	ENSGT00390000012690
Caniformia_b	ANCESTRAL SPECIES	16	ENSGT00390000003478 #7	ENSGT00730000111231 #8	ENSGT00940000158081 #9	ENSGT00410000025695.b #10	ENSGT00390000002913 #11	ENSGT00940000158163 #12	ENSGT00390000000672.a.a #13	ENSGT00940000160699 #14	ENSGT00390000014856 #15	ENSGT00940000160753 #16	ENSGT00390000017748 #17	ENSGT00940000158649 #18	ENSGT00940000160926 #19	ENSGT00390000012913.a #20	ENSGT00410000025695.a #21	ENSGT00390000012198 #22	ENSGT00390000004097.a #23	ENSGT00940000160464 #24	ENSGT00390000000719 #25	ENSGT00390000007227.b #26	ENSGT00390000008152.B.a #27	ENSGT00940000162643 #28	ENSGT01050000244941.B.c	ENSGT00950000183110.a	ENSGT00550000075064	ENSGT00940000163095.b	ENSGT00940000153104.e.a.a.b	ENSGT00390000001296	ENSGT00940000156463	ENSGT00390000012690	ENSGT00940000155721
Ursidae	ANCESTRAL SPECIES	11	ENSGT00390000003478 #7	ENSGT00730000111231 #8	ENSGT00940000158081 #9	ENSGT00410000025695.b #10	ENSGT00390000002913 #11	ENSGT00940000158163 #12	ENSGT00390000000672.a.a #13	ENSGT00940000160699 #14	ENSGT00390000014856 #15	ENSGT00940000160753 #16	ENSGT00390000017748 #17	ENSGT00940000158649 #18	ENSGT00940000160926 #19	ENSGT00390000012913.a #20	ENSGT00410000025695.a #21	ENSGT00390000012198 #22	ENSGT00390000004097.a #23	ENSGT00940000160464 #24	ENSGT00390000000719 #25	ENSGT00390000007227.b #26	ENSGT00390000008152.B.a #27	ENSGT00940000162643 #28	ENSGT01050000244941.B.c	ENSGT00950000183110.a	ENSGT00550000075064	ENSGT00940000163095.b	ENSGT00940000153104.e.a.a.b	ENSGT00390000001296	ENSGT00940000156463	ENSGT00390000012690	ENSGT00940000155721
Ursus	ANCESTRAL SPECIES	5	ENSGT00390000003478 #7	ENSGT00730000111231 #8	ENSGT00940000158081 #9	ENSGT00410000025695.b #10	ENSGT00390000002913 #11	ENSGT00940000158163 #12	ENSGT00390000000672.a.a #13	ENSGT00940000160699 #14	ENSGT00390000014856 #15	ENSGT00940000160753 #16	ENSGT00390000017748 #17	ENSGT00940000158649 #18	ENSGT00940000160926 #19	ENSGT00390000012913.a #20	ENSGT00410000025695.a #21	ENSGT00390000012198 #22	ENSGT00390000004097.a #23	ENSGT00940000160464 #24	ENSGT00390000000719 #25	ENSGT00390000007227.b #26	ENSGT00390000008152.B.a #27	ENSGT00940000162643 #28	ENSGT01050000244941.B.c	ENSGT00950000183110.a	ENSGT00550000075064	ENSGT00940000163095.b	ENSGT00940000153104.e.a.a.b	ENSGT00390000001296	ENSGT00940000156463	ENSGT00390000012690	ENSGT00950000185538
American black bear	MODERN SPECIES							SLC25A42 (ENSUAMG00000000001) #12	TMEM161A (ENSUAMG00000000002) #13	MEF2B (ENSUAMG00000000003) #14	BORCS8 (ENSUAMG00000000004) #15	RFXANK (ENSUAMG00000000005) #16	NR2C2AP (ENSUAMG00000000006) #17	NCAN (ENSUAMG00000000007) #18	HAPLN4 (ENSUAMG00000000008) #19	TM6SF2 (ENSUAMG00000000009) #20	SUGP1 (ENSUAMG00000000010) #21	MAU2 (ENSUAMG00000000016) #22	ENSUAMG00000000653 #21	GATAD2A (ENSUAMG00000000666) #23	TSSK6 (ENSUAMG00000000680) #24	NDUFA13 (ENSUAMG00000000686) #25	YJEFN3 (ENSUAMG00000000690) #26	CILP2 (ENSUAMG00000000697) #27	PBX4 (ENSUAMG00000000763) #28	LPAR2 (ENSUAMG00000001027)	ATP13A1 (ENSUAMG00000001148)	ZNF502 (ENSUAMG00000001904)	ZNF501 (ENSUAMG00000001908)	KIAA1143 (ENSUAMG00000001910)	KIF15 (ENSUAMG00000001916)	TMEM42 (ENSUAMG00000001960)	ENSUAMG00000001965
Polar bear	MODERN SPECIES	255	UPF1 (ENSUMAG00000006652)	COPE (ENSUMAG00000006505) #7	DDX49 (ENSUMAG00000006489) #8	HOMER3 (ENSUMAG00000006477) #9	SUGP2 (ENSUMAG00000006467) #10	ARMC6 (ENSUMAG00000006462) #11	SLC25A42 (ENSUMAG00000006458) #12	TMEM161A (ENSUMAG00000006455) #13	MEF2B (ENSUMAG00000006437) #14	BORCS8 (ENSUMAG00000006425) #15	RFXANK (ENSUMAG00000006419) #16	NR2C2AP (ENSUMAG00000006411) #17	NCAN (ENSUMAG00000006378) #18	TM6SF2 (ENSUMAG00000006368) #20	SUGP1 (ENSUMAG00000006358) #21	MAU2 (ENSUMAG00000006229) #22	GATAD2A (ENSUMAG00000006192) #23	TSSK6 (ENSUMAG00000006185) #24	NDUFA13 (ENSUMAG00000006183) #25	ENSUMAG00000006179 #26	PBX4 (ENSUMAG00000006125) #28	LPAR2 (ENSUMAG00000006117)	GMIP (ENSUMAG00000006087)	ATP13A1 (ENSUMAG00000005989)	ZNF502 (ENSUMAG00000005965)	ZNF501 (ENSUMAG00000005963)	KIAA1143 (ENSUMAG00000005959)	KIF15 (ENSUMAG00000005764)	TMEM42 (ENSUMAG00000005738)	ENSUMAG00000005734	ZDHHC3 (ENSUMAG00000005730)
Giant Panda	MODERN SPECIES	14	COPE (ENSAMEG00000011524) #7	DDX49 (ENSAMEG00000011566) #8	HOMER3 (ENSAMEG00000011595) #9	SUGP2 (ENSAMEG00000011613) #10	ARMC6 (ENSAMEG00000011621) #11	SLC25A42 (ENSAMEG00000027218) #12	TMEM161A (ENSAMEG00000011655) #13	MEF2B (ENSAMEG00000011682) #14	BORCS8 (ENSAMEG00000011698) #15	RFXANK (ENSAMEG00000011703) #16	NR2C2AP (ENSAMEG00000011727) #17	NCAN (ENSAMEG00000011734) #18	HAPLN4 (ENSAMEG00000027731) #19	TM6SF2 (ENSAMEG00000011811) #20	SUGP1 (ENSAMEG00000011838) #21	MAU2 (ENSAMEG00000011868) #22	GATAD2A (ENSAMEG00000011882) #23	TSSK6 (ENSAMEG00000019351) #24	NDUFA13 (ENSAMEG00000011893) #25	YJEFN3 (ENSAMEG00000030667) #26	CILP2 (ENSAMEG00000011906) #27	PBX4 (ENSAMEG00000011909) #28	LPAR2 (ENSAMEG00000024299)	GMIP (ENSAMEG00000011931)	ENSAMEG00000011962	ENSAMEG00000012026	ENSAMEG00000019371	KIAA1143 (ENSAMEG00000012027)	KIF15 (ENSAMEG00000012038)	TMEM42 (ENSAMEG00000012098)	ZDHHC3 (ENSAMEG00000028275)
Mustelinae	ANCESTRAL SPECIES	10	ENSGT00390000003478 #7	ENSGT00730000111231 #8	ENSGT00940000158081 #9	ENSGT00410000025695.b #10	ENSGT00390000002913 #11	ENSGT00940000158163 #12	ENSGT00390000000672.a.a #13	ENSGT00940000160699 #14	ENSGT00390000014856 #15	ENSGT00940000160753 #16	ENSGT00390000017748 #17	ENSGT00940000158649 #18	ENSGT00940000160926 #19	ENSGT00390000012913.a #20	ENSGT00410000025695.a #21	ENSGT00390000012198 #22	ENSGT00390000004097.a #23	ENSGT00940000160464 #24	ENSGT00390000000719 #25	ENSGT00390000007227.b #26	ENSGT00390000008152.B.a #27	ENSGT00940000162643 #28	ENSGT01050000244941.B.c	ENSGT00950000183110.a	ENSGT00550000075064	ENSGT00940000163095.b	ENSGT00940000153104.e.a.a.b	ENSGT00390000001296	ENSGT00940000156463	ENSGT00390000012690	ENSGT00940000155721
American mink	MODERN SPECIES	58	COPE (ENSNVIG00000019958) #7	DDX49 (ENSNVIG00000020003) #8	HOMER3 (ENSNVIG00000020032) #9	SUGP2 (ENSNVIG00000020116) #10	ARMC6 (ENSNVIG00000020143) #11	S2542 (ENSNVIG00000020166) #12	TMEM161A (ENSNVIG00000020180) #13	MEF2B (ENSNVIG00000020206) #14	BORCS8 (ENSNVIG00000020221) #15	RFXANK (ENSNVIG00000020264) #16	NR2CA (ENSNVIG00000020303) #17	NCAN (ENSNVIG00000020377) #18	HAPLN4 (ENSNVIG00000020713) #19	TM6SF2 (ENSNVIG00000020733) #20	SUGP1 (ENSNVIG00000020747) #21	MAU2 (ENSNVIG00000020762) #22	GATAD2A (ENSNVIG00000020782) #23	TSSK6 (ENSNVIG00000020829) #24	NDUFA13 (ENSNVIG00000020832) #25	YJEFN3 (ENSNVIG00000020838) #26	CILP2 (ENSNVIG00000020847) #27	PBX4 (ENSNVIG00000020863) #28	LPAR2 (ENSNVIG00000020878)	GMIP (ENSNVIG00000020899)	ATP13A1 (ENSNVIG00000020944)	ZNF502 (ENSNVIG00000020983)	ZNF501 (ENSNVIG00000020994)	K1143 (ENSNVIG00000020998)	KIF15 (ENSNVIG00000021010)	ENSNVIG00000021055	ZDHHC3 (ENSNVIG00000021069)
Ferret	MODERN SPECIES	238	CERS1 (ENSMPUG00000015497)	COPE (ENSMPUG00000015486) #7	DDX49 (ENSMPUG00000015485) #8	HOMER3 (ENSMPUG00000015484) #9	SUGP2 (ENSMPUG00000015478) #10	SLC25A42 (ENSMPUG00000015477) #12	TMEM161A (ENSMPUG00000015475) #13	MEF2B (ENSMPUG00000015473) #14	BORCS8 (ENSMPUG00000015471) #15	RFXANK (ENSMPUG00000015469) #16	NR2C2AP (ENSMPUG00000015462) #17	NCAN (ENSMPUG00000015433) #18	HAPLN4 (ENSMPUG00000015424) #19	TM6SF2 (ENSMPUG00000015407) #20	SUGP1 (ENSMPUG00000015404) #21	MAU2 (ENSMPUG00000015402) #22	GATAD2A (ENSMPUG00000015399) #23	TSSK6 (ENSMPUG00000019662) #24	YJEFN3 (ENSMPUG00000015390) #26	CILP2 (ENSMPUG00000015383) #27	PBX4 (ENSMPUG00000015365) #28	LPAR2 (ENSMPUG00000015364)	GMIP (ENSMPUG00000015351)	ATP13A1 (ENSMPUG00000015350)	ZNF502 (ENSMPUG00000015349)	KIAA1143 (ENSMPUG00000015348)	KIF15 (ENSMPUG00000015344)	TMEM42 (ENSMPUG00000015339)	ZDHHC3 (ENSMPUG00000015337)	EXOSC7 (ENSMPUG00000015336)	CLEC3B (ENSMPUG00000015333)
Canidae	ANCESTRAL SPECIES		ENSGT00390000003478.b #7	ENSGT00730000111231 #8	ENSGT00940000158081 #9	ENSGT00410000025695.b #10	ENSGT00390000002913 #11	ENSGT00940000158163 #12	ENSGT00390000000672.a.a #13	ENSGT00940000160699 #14	ENSGT00390000014856 #15	ENSGT00940000160753 #16	ENSGT00390000017748 #17	ENSGT00940000158649 #18	ENSGT00940000160926 #19	ENSGT00390000012913.a #20	ENSGT00410000025695.a #21	ENSGT00390000012198 #22	ENSGT00390000004097.a #23	ENSGT00940000160464 #24	ENSGT00390000000719 #25	ENSGT00960000189525	ENSGT00390000007227.b #26	ENSGT00390000008152.B.a #27	ENSGT00940000162643 #28	ENSGT01050000244941.B.c	ENSGT00950000183110.a	ENSGT00550000075064	ENSGT00940000163095.b	ENSGT00950000182890.D.d.c.d	ENSGT00390000001296	ENSGT00940000156463	ENSGT00390000012690
Canis_lupus	ANCESTRAL SPECIES	1	ENSGT00390000003478.b #7	ENSGT00730000111231 #8	ENSGT00940000158081 #9	ENSGT00410000025695.b #10	ENSGT00390000002913 #11	ENSGT00940000158163 #12	ENSGT00390000000672.a.a #13	ENSGT00940000160699 #14	ENSGT00390000014856 #15	ENSGT00940000160753 #16	ENSGT00390000017748 #17	ENSGT00940000158649 #18	ENSGT00940000160926 #19	ENSGT00390000012913.a #20	ENSGT00410000025695.a #21	ENSGT00390000012198 #22	ENSGT00390000004097.a #23	ENSGT00940000160464 #24	ENSGT00390000000719 #25	ENSGT00960000189525	ENSGT00390000007227.b #26	ENSGT00390000008152.B.a #27	ENSGT00940000162643 #28	ENSGT01050000244941.B.c	ENSGT00950000183110.a	ENSGT00550000075064	ENSGT00940000163095.b	ENSGT00950000182890.D.d.c.d	ENSGT00390000001296	ENSGT00940000156463	ENSGT00390000012690
Dog	MODERN SPECIES	12	COPE (ENSCAFG00845019400) #7	DDX49 (ENSCAFG00845019266) #8	HOMER3 (ENSCAFG00845019115) #9	SUGP2 (ENSCAFG00845018888) #10	ARMC6 (ENSCAFG00845018765) #11	SLC25A42 (ENSCAFG00845018653) #12	TMEM161A (ENSCAFG00845018423) #13	MEF2B (ENSCAFG00845018253) #14	BORCS8 (ENSCAFG00845018185) #15	NR2C2AP (ENSCAFG00845018085) #17	RFXANK (ENSCAFG00845014775) #16	NCAN (ENSCAFG00845014625) #18	HAPLN4 (ENSCAFG00845014588) #19	TM6SF2 (ENSCAFG00845014561) #20	SUGP1 (ENSCAFG00845014514) #21	MAU2 (ENSCAFG00845014470) #22	GATAD2A (ENSCAFG00845014383) #23	TSSK6 (ENSCAFG00845014349) #24	NDUFA13 (ENSCAFG00845014336) #25	YJEFN3 (ENSCAFG00845014306) #26	CILP2 (ENSCAFG00845014273) #27	PBX4 (ENSCAFG00845014230) #28	LPAR2 (ENSCAFG00845014191)	GMIP (ENSCAFG00845014134)	ATP13A1 (ENSCAFG00845014060)	ENSCAFG00845014000	ENSCAFG00845013976	KIAA1143 (ENSCAFG00845013959)	KIF15 (ENSCAFG00845013570)	ENSCAFG00845013403	ZDHHC3 (ENSCAFG00845013279)
Dingo	MODERN SPECIES	112	COPE (ENSCAFG00020012363) #7	DDX49 (ENSCAFG00020012375) #8	HOMER3 (ENSCAFG00020012389) #9	SUGP2 (ENSCAFG00020012392) #10	ARMC6 (ENSCAFG00020012404) #11	SLC25A42 (ENSCAFG00020012408) #12	TMEM161A (ENSCAFG00020012412) #13	MEF2B (ENSCAFG00020012425) #14	BORCS8 (ENSCAFG00020012435) #15	RFXANK (ENSCAFG00020012437) #16	NR2C2AP (ENSCAFG00020012443) #17	NCAN (ENSCAFG00020012454) #18	HAPLN4 (ENSCAFG00020012500) #19	TM6SF2 (ENSCAFG00020012504) #20	SUGP1 (ENSCAFG00020012508) #21	MAU2 (ENSCAFG00020012543) #22	GATAD2A (ENSCAFG00020012715) #23	TSSK6 (ENSCAFG00020012717) #24	NDUFA13 (ENSCAFG00020012721) #25	ENSCAFG00020012723	YJEFN3 (ENSCAFG00020012724) #26	CILP2 (ENSCAFG00020012728) #27	PBX4 (ENSCAFG00020012739) #28	LPAR2 (ENSCAFG00020012758)	GMIP (ENSCAFG00020012761)	ATP13A1 (ENSCAFG00020012802)	ZNF502 (ENSCAFG00020013240)	KIAA1143 (ENSCAFG00020013246)	KIF15 (ENSCAFG00020013252)	TMEM42 (ENSCAFG00020013305)	ZDHHC3 (ENSCAFG00020013308)
Red fox	MODERN SPECIES	5	ENSVVUG00000007777 #7	DDX49 (ENSVVUG00000007767) #8	HOMER3 (ENSVVUG00000007758) #9	SUGP2 (ENSVVUG00000007744) #10	ARMC6 (ENSVVUG00000007731) #11	SLC25A42 (ENSVVUG00000007728) #12	TMEM161A (ENSVVUG00000007683) #13	MEF2B (ENSVVUG00000007672) #14	BORCS8 (ENSVVUG00000007667) #15	RFXANK (ENSVVUG00000007633) #16	NR2C2AP (ENSVVUG00000007609) #17	NCAN (ENSVVUG00000007597) #18	HAPLN4 (ENSVVUG00000007594) #19	TM6SF2 (ENSVVUG00000007584) #20	SUGP1 (ENSVVUG00000007569) #21	MAU2 (ENSVVUG00000007527) #22	GATAD2A (ENSVVUG00000007522) #23	TSSK6 (ENSVVUG00000007516) #24	NDUFA13 (ENSVVUG00000007513) #25	YJEFN3 (ENSVVUG00000007502) #26	CILP2 (ENSVVUG00000007489) #27	PBX4 (ENSVVUG00000007478) #28	LPAR2 (ENSVVUG00000007473)	GMIP (ENSVVUG00000007227)	ATP13A1 (ENSVVUG00000007184)	ZNF502 (ENSVVUG00000007182)	ENSVVUG00000007176	KIAA1143 (ENSVVUG00000007169)	KIF15 (ENSVVUG00000007077)	TMEM42 (ENSVVUG00000007057)	ENSVVUG00000007053
Felidae	ANCESTRAL SPECIES	17	ENSGT00390000003478 #7	ENSGT00730000111231 #8	ENSGT00940000158081 #9	ENSGT00410000025695.b #10	ENSGT00390000002913 #11	ENSGT00940000158163 #12	ENSGT00390000000672.a.a #13	ENSGT00940000160699 #14	ENSGT00390000014856 #15	ENSGT00940000160753 #16	ENSGT00390000017748 #17	ENSGT00940000158649 #18	ENSGT00940000160926 #19	ENSGT00390000012913.a #20	ENSGT00410000025695.a #21	ENSGT00390000012198 #22	ENSGT00390000004097.a #23	ENSGT00940000160464 #24	ENSGT00390000000719 #25	ENSGT00390000007227.b #26	ENSGT00390000008152.B.a #27	ENSGT00940000162643 #28	ENSGT01050000244941.B.c	ENSGT00950000183110.a	ENSGT00550000075064	ENSGT00940000163095.b	ENSGT00950000182890.D.d.c	ENSGT00390000001296	ENSGT00940000156463	ENSGT00390000012690	ENSGT00940000155721
Panthera	ANCESTRAL SPECIES	1	ENSGT00390000003478 #7	ENSGT00730000111231 #8	ENSGT00940000158081 #9	ENSGT00410000025695.b #10	ENSGT00390000002913 #11	ENSGT00940000158163 #12	ENSGT00390000000672.a.a #13	ENSGT00940000160699 #14	ENSGT00390000014856 #15	ENSGT00940000160753 #16	ENSGT00390000017748 #17	ENSGT00940000158649 #18	ENSGT00940000160926 #19	ENSGT00390000012913.a #20	ENSGT00410000025695.a #21	ENSGT00390000012198 #22	ENSGT00390000004097.a #23	ENSGT00940000160464 #24	ENSGT00390000000719 #25	ENSGT00390000007227.b #26	ENSGT00390000008152.B.a #27	ENSGT00940000162643 #28	ENSGT01050000244941.B.c	ENSGT00950000183110.a	ENSGT00550000075064	ENSGT00940000163095.b	ENSGT00950000182890.D.d.c	ENSGT00390000001296	ENSGT00940000156463.e	ENSGT00390000012690	ENSGT00940000155721
Tiger	MODERN SPECIES	281	CERS1 (ENSPTIG00000010849)	COPE (ENSPTIG00000010957) #7	DDX49 (ENSPTIG00000011259) #8	HOMER3 (ENSPTIG00000011533) #9	SUGP2 (ENSPTIG00000012003) #10	ARMC6 (ENSPTIG00000012073) #11	SLC25A42 (ENSPTIG00000012354) #12	TMEM161A (ENSPTIG00000012395) #13	MEF2B (ENSPTIG00000012475) #14	BORCS8 (ENSPTIG00000012610) #15	RFXANK (ENSPTIG00000012655) #16	NR2C2AP (ENSPTIG00000012962) #17	HAPLN4 (ENSPTIG00000013017) #19	TM6SF2 (ENSPTIG00000013026) #20	SUGP1 (ENSPTIG00000013061) #21	MAU2 (ENSPTIG00000013179) #22	GATAD2A (ENSPTIG00000013272) #23	TSSK6 (ENSPTIG00000006514) #24	NDUFA13 (ENSPTIG00000013303) #25	YJEFN3 (ENSPTIG00000013321) #26	CILP2 (ENSPTIG00000013349) #27	PBX4 (ENSPTIG00000013405) #28	LPAR2 (ENSPTIG00000013412)	GMIP (ENSPTIG00000013444)	ZNF502 (ENSPTIG00000013634)	ENSPTIG00000006544	KIAA1143 (ENSPTIG00000013723)	ENSPTIG00000013732	ENSPTIG00000013744	TMEM42 (ENSPTIG00000013807)	ZDHHC3 (ENSPTIG00000013818)
Panthera_a	ANCESTRAL SPECIES		ENSGT00390000003478 #7	ENSGT00730000111231 #8	ENSGT00940000158081 #9	ENSGT00410000025695.b #10	ENSGT00390000002913 #11	ENSGT00940000158163 #12	ENSGT00390000000672.a.a #13	ENSGT00940000160699 #14	ENSGT00390000014856 #15	ENSGT00940000160753 #16	ENSGT00390000017748 #17	ENSGT00940000158649 #18	ENSGT00940000160926 #19	ENSGT00390000012913.a #20	ENSGT00410000025695.a #21	ENSGT00390000012198 #22	ENSGT00390000004097.a #23	ENSGT00940000160464 #24	ENSGT00390000000719 #25	ENSGT00390000007227.b #26	ENSGT00390000008152.B.a #27	ENSGT00940000162643 #28	ENSGT01050000244941.B.c	ENSGT00950000183110.a	ENSGT00550000075064	ENSGT00940000163095.b	ENSGT00950000182890.D.d.c	ENSGT00390000001296	ENSGT00940000156463.e	ENSGT00390000012690	ENSGT00940000155721
lion	MODERN SPECIES	2	COPE (ENSPLOG00000000628) #7	DDX49 (ENSPLOG00000000667) #8	HOMER3 (ENSPLOG00000000722) #9	SUGP2 (ENSPLOG00000000772) #10	ARMC6 (ENSPLOG00000000792) #11	SLC25A42 (ENSPLOG00000000808) #12	TMEM161A (ENSPLOG00000000833) #13	MEF2B (ENSPLOG00000000863) #14	BORCS8 (ENSPLOG00000000887) #15	RFXANK (ENSPLOG00000000919) #16	ENSPLOG00000000980 #17	NCAN (ENSPLOG00000001120) #18	HAPLN4 (ENSPLOG00000001286) #19	TM6SF2 (ENSPLOG00000001308) #20	SUGP1 (ENSPLOG00000001334) #21	MAU2 (ENSPLOG00000001424) #22	GATAD2A (ENSPLOG00000001463) #23	TSSK6 (ENSPLOG00000001493) #24	NDUFA13 (ENSPLOG00000001502) #25	YJEFN3 (ENSPLOG00000001517) #26	CILP2 (ENSPLOG00000001532) #27	PBX4 (ENSPLOG00000001560) #28	LPAR2 (ENSPLOG00000001569)	GMIP (ENSPLOG00000001614)	ATP13A1 (ENSPLOG00000001767)	ZNF502 (ENSPLOG00000001805)	ENSPLOG00000001812	KIAA1143 (ENSPLOG00000001819)	KIF15 (ENSPLOG00000001861)	TMEM42 (ENSPLOG00000001938)	ZDHHC3 (ENSPLOG00000001963)
leopard	MODERN SPECIES	68	CERS1 (ENSPPRG00000021419)	COPE (ENSPPRG00000019668) #7	DDX49 (ENSPPRG00000013274) #8	HOMER3 (ENSPPRG00000013004) #9	SUGP2 (ENSPPRG00000010924) #10	ARMC6 (ENSPPRG00000009582) #11	SLC25A42 (ENSPPRG00000008936) #12	TMEM161A (ENSPPRG00000008638) #13	MEF2B (ENSPPRG00000006317) #14	BORCS8 (ENSPPRG00000004580) #15	RFXANK (ENSPPRG00000004266) #16	NR2C2AP (ENSPPRG00000003111) #17	HAPLN4 (ENSPPRG00000001581) #19	TM6SF2 (ENSPPRG00000001208) #20	SUGP1 (ENSPPRG00000000880) #21	MAU2 (ENSPPRG00000000643) #22	GATAD2A (ENSPPRG00000000270) #23	TSSK6 (ENSPPRG00000016235) #24	NDUFA13 (ENSPPRG00000022807) #25	YJEFN3 (ENSPPRG00000023619) #26	CILP2 (ENSPPRG00000023737) #27	PBX4 (ENSPPRG00000020424) #28	LPAR2 (ENSPPRG00000018123)	GMIP (ENSPPRG00000016893)	ATP13A1 (ENSPPRG00000014180)	ENSPPRG00000011672	ZNF502 (ENSPPRG00000011352)	ENSPPRG00000015943	KIAA1143 (ENSPPRG00000011059)	KIF15 (ENSPPRG00000010780)	ENSPPRG00000008691
Cat	MODERN SPECIES	1	UPF1 (ENSFCAG00000009757)	CERS1 (ENSFCAG00000023920) #7	DDX49 (ENSFCAG00000009760) #8	HOMER3 (ENSFCAG00000009762) #9	SUGP2 (ENSFCAG00000009765) #10	ARMC6 (ENSFCAG00000009767) #11	SLC25A42 (ENSFCAG00000009770) #12	TMEM161A (ENSFCAG00000009771) #13	MEF2B (ENSFCAG00000009774) #14	BORCS8 (ENSFCAG00000047348) #15	RFXANK (ENSFCAG00000009775) #16	NR2C2AP (ENSFCAG00000009777) #17	NCAN (ENSFCAG00000008376) #18	HAPLN4 (ENSFCAG00000022898) #19	SUGP1 (ENSFCAG00000009779) #21	MAU2 (ENSFCAG00000009780) #22	GATAD2A (ENSFCAG00000014327) #23	TSSK6 (ENSFCAG00000014328) #24	NDUFA13 (ENSFCAG00000014329) #25	YJEFN3 (ENSFCAG00000014330) #26	CILP2 (ENSFCAG00000014331) #27	PBX4 (ENSFCAG00000014536) #28	LPAR2 (ENSFCAG00000014538)	GMIP (ENSFCAG00000014540)	ATP13A1 (ENSFCAG00000014541)	ZNF502 (ENSFCAG00000024223)	ENSFCAG00000042601	KIAA1143 (ENSFCAG00000007638)	KIF15 (ENSFCAG00000007640)	TMEM42 (ENSFCAG00000007645)	ZDHHC3 (ENSFCAG00000007646)
Laurasiatheria_c	ANCESTRAL SPECIES	16	ENSGT00390000003478 #7	ENSGT00730000111231 #8	ENSGT00940000158081 #9	ENSGT00410000025695.b #10	ENSGT00390000002913 #11	ENSGT00940000158163 #12	ENSGT00390000000672.a.a #13	ENSGT00940000160699 #14	ENSGT00390000014856 #15	ENSGT00940000160753 #16	ENSGT00390000017748 #17	ENSGT00940000158649 #18	ENSGT00940000160926 #19	ENSGT00390000012913.a #20	ENSGT00410000025695.a #21	ENSGT00390000012198 #22	ENSGT00390000004097.a #23	ENSGT01090000261752	ENSGT00940000160464 #24	ENSGT00390000000719 #25	ENSGT00390000007227.b #26	ENSGT00390000008152.B.a #27	ENSGT00940000162643 #28	ENSGT01050000244941.B.c	ENSGT00950000183110.a	ENSGT00550000075064
Equus	ANCESTRAL SPECIES	23	ENSGT01030000234515.b	ENSGT00390000003478 #7	ENSGT00730000111231 #8	ENSGT00940000158081 #9	ENSGT00410000025695.b #10	ENSGT00390000002913 #11	ENSGT00940000158163 #12	ENSGT00390000000672.a.a #13	ENSGT00940000160699 #14	ENSGT00390000014856 #15	ENSGT00940000160753 #16	ENSGT00390000017748 #17	ENSGT00940000158649 #18	ENSGT00940000160926 #19	ENSGT00410000025695.a #21	ENSGT00390000012198 #22	ENSGT00390000004097.a #23	ENSGT01090000261752	ENSGT00940000160464 #24	ENSGT00390000007227.b #26	ENSGT00390000008152.B.a #27	ENSGT00940000162643 #28	ENSGT01050000244941.B.c	ENSGT00950000183110.a	ENSGT00550000075064	ENSGT00390000018500.a	ENSGT01100000263521.a.a.b.a.b.b	ENSGT00940000161175	ENSGT00940000163610	ENSGT00940000162327	ENSGT01090000259995.a.a.b.a.b.b
Donkey	MODERN SPECIES		CERS1 (ENSEASG00005030456)	COPE (ENSEASG00005006557) #7	DDX49 (ENSEASG00005006560) #8	HOMER3 (ENSEASG00005006562) #9	SUGP2 (ENSEASG00005006565) #10	ARMC6 (ENSEASG00005006568) #11	SLC25A42 (ENSEASG00005006570) #12	TMEM161A (ENSEASG00005006575) #13	MEF2B (ENSEASG00005006578) #14	BORCS8 (ENSEASG00005006580) #15	RFXANK (ENSEASG00005006582) #16	NR2C2AP (ENSEASG00005027263) #17	NCAN (ENSEASG00005006587) #18	HAPLN4 (ENSEASG00005006590) #19	SUGP1 (ENSEASG00005006593) #21	MAU2 (ENSEASG00005006596) #22	GATAD2A (ENSEASG00005006602) #23	TSSK6 (ENSEASG00005006607) #24	ENSEASG00005028100	YJEFN3 (ENSEASG00005006613) #26	CILP2 (ENSEASG00005006616) #27	ENSEASG00005033171 #28	LPAR2 (ENSEASG00005031542)	GMIP (ENSEASG00005006622)	ENSEASG00005006649	ENSEASG00005006747	ZNF672 (ENSEASG00005035295)	ZNF692 (ENSEASG00005006750)	ENSEASG00005006754	ENSEASG00005006758	ENSEASG00005006760
Horse	MODERN SPECIES	13	CERS1 (ENSECAG00000052582)	COPE (ENSECAG00000024390) #7	DDX49 (ENSECAG00000012194) #8	HOMER3 (ENSECAG00000023105) #9	SUGP2 (ENSECAG00000000129) #10	ARMC6 (ENSECAG00000006428) #11	SLC25A42 (ENSECAG00000011367) #12	TMEM161A (ENSECAG00000013963) #13	MEF2B (ENSECAG00000022642) #14	BORCS8 (ENSECAG00000007592) #15	RFXANK (ENSECAG00000009442) #16	NR2C2AP (ENSECAG00000015219) #17	NCAN (ENSECAG00000016115) #18	HAPLN4 (ENSECAG00000020045) #19	SUGP1 (ENSECAG00000013871) #21	MAU2 (ENSECAG00000001359) #22	GATAD2A (ENSECAG00000012875) #23	ENSECAG00000017590	TSSK6 (ENSECAG00000051056) #24	YJEFN3 (ENSECAG00000018123) #26	CILP2 (ENSECAG00000000250) #27	ENSECAG00000044009 #28	LPAR2 (ENSECAG00000009148)	GMIP (ENSECAG00000011647)	ATP13A1 (ENSECAG00000020569)	ENSECAG00000040482	ENSECAG00000045987	ENSECAG00000049438	SH3BP5L (ENSECAG00000000789)	ZNF672 (ENSECAG00000013991)	ZNF692 (ENSECAG00000015402)
Chiroptera	ANCESTRAL SPECIES	44	ENSGT00390000003478 #7	ENSGT00730000111231 #8	ENSGT00940000158081 #9	ENSGT00410000025695.b #10	ENSGT00390000002913 #11	ENSGT00940000158163 #12	ENSGT00390000000672.a.a #13	ENSGT00940000160699 #14	ENSGT00390000014856 #15	ENSGT00940000160753 #16	ENSGT00390000017748 #17	ENSGT00940000158649 #18	ENSGT00940000160926 #19	ENSGT00390000012913.a #20	ENSGT00410000025695.a #21	ENSGT00390000012198 #22	ENSGT00390000004097.a #23	ENSGT00940000160464 #24	ENSGT00390000000719 #25	ENSGT00390000007227.b #26	ENSGT00390000008152.B.a #27	ENSGT00940000162643 #28	ENSGT01050000244941.B.c	ENSGT00950000183110.a	ENSGT00550000075064
Microchiroptera	ANCESTRAL SPECIES	43	ENSGT00390000003478 #7	ENSGT00730000111231 #8	ENSGT00940000158081 #9	ENSGT00410000025695.b #10	ENSGT00390000002913 #11	ENSGT00940000158163 #12	ENSGT00390000000672.a.a #13	ENSGT00940000160699 #14	ENSGT00390000014856 #15	ENSGT00940000160753 #16	ENSGT00390000017748 #17	ENSGT00940000158649 #18	ENSGT00940000160926 #19	ENSGT00390000012913.a #20	ENSGT00410000025695.a #21	ENSGT00390000012198 #22	ENSGT00390000004097.a #23	ENSGT00940000160464 #24	ENSGT00390000000719 #25	ENSGT00390000007227.b #26	ENSGT00390000008152.B.a #27	ENSGT00940000162643 #28	ENSGT01050000244941.B.c	ENSGT00950000183110.a	ENSGT00550000075064	ENSGT00940000157178
Greater horseshoe bat	MODERN SPECIES	9	CERS1 (ENSRFEG00010005439)	DDX49 (ENSRFEG00010005585) #8	HOMER3 (ENSRFEG00010005693) #9	SUGP2 (ENSRFEG00010005746) #10	ARMC6 (ENSRFEG00010005797) #11	SLC25A42 (ENSRFEG00010005823) #12	TMEM161A (ENSRFEG00010005885) #13	MEF2B (ENSRFEG00010005974) #14	BORCS8 (ENSRFEG00010006052) #15	RFXANK (ENSRFEG00010006139) #16	NR2C2AP (ENSRFEG00010006230) #17	NCAN (ENSRFEG00010006275) #18	HAPLN4 (ENSRFEG00010006311) #19	TM6SF2 (ENSRFEG00010006340) #20	SUGP1 (ENSRFEG00010006391) #21	MAU2 (ENSRFEG00010006479) #22	GATAD2A (ENSRFEG00010006588) #23	TSSK6 (ENSRFEG00010006656) #24	NDUFA13 (ENSRFEG00010006692) #25	YJEFN3 (ENSRFEG00010006740) #26	CILP2 (ENSRFEG00010006782) #27	PBX4 (ENSRFEG00010006894) #28	LPAR2 (ENSRFEG00010007041)	GMIP (ENSRFEG00010007096)	ATP13A1 (ENSRFEG00010007191)	ENSRFEG00010007665	LPL (ENSRFEG00010007714)	MARCHF1 (ENSRFEG00010007829)	ENSRFEG00010007896	TMA16 (ENSRFEG00010007959)	TKTL2 (ENSRFEG00010008024)
Microbat	MODERN SPECIES	1248	DDX49 (ENSMLUG00000012159) #8	HOMER3 (ENSMLUG00000012170) #9	ENSMLUG00000025755	SUGP2 (ENSMLUG00000012189) #10	ENSMLUG00000012203 #11	SLC25A42 (ENSMLUG00000012208) #12	TMEM161A (ENSMLUG00000017352) #13	MEF2B (ENSMLUG00000003299) #14	BORCS8 (ENSMLUG00000025095) #15	RFXANK (ENSMLUG00000017354) #16	NR2C2AP (ENSMLUG00000017355) #17	NCAN (ENSMLUG00000017356) #18	HAPLN4 (ENSMLUG00000017358) #19	TM6SF2 (ENSMLUG00000027634) #20	SUGP1 (ENSMLUG00000017360) #21	MAU2 (ENSMLUG00000017362) #22	GATAD2A (ENSMLUG00000017364) #23	TSSK6 (ENSMLUG00000017365) #24	NDUFA13 (ENSMLUG00000017367) #25	YJEFN3 (ENSMLUG00000017368) #26	CILP2 (ENSMLUG00000017369) #27	LPAR2 (ENSMLUG00000007886)	GMIP (ENSMLUG00000023678)	ATP13A1 (ENSMLUG00000007903)	LPL (ENSMLUG00000000724)	ENSMLUG00000026606
Megabat	MODERN SPECIES	1678									MEF2B (ENSPVAG00000017435) #14	RFXANK (ENSPVAG00000017440) #16	NR2C2AP (ENSPVAG00000017442) #17	NCAN (ENSPVAG00000017445) #18	HAPLN4 (ENSPVAG00000017448) #19	TM6SF2 (ENSPVAG00000017449) #20	SUGP1 (ENSPVAG00000017451) #21	MAU2 (ENSPVAG00000017452) #22	GATAD2A (ENSPVAG00000017453) #23	NDUFA13 (ENSPVAG00000017454) #25	YJEFN3 (ENSPVAG00000017455) #26	CILP2 (ENSPVAG00000017456) #27	PBX4 (ENSPVAG00000017459) #28	LPAR2 (ENSPVAG00000017460)	GMIP (ENSPVAG00000017461)	ATP13A1 (ENSPVAG00000017462)
Eulipotyphla	ANCESTRAL SPECIES																	ENSGT00390000012198 #22
Common shrew	MODERN SPECIES	2019																MAU2 (ENSSARG00000011263) #22
Atlantogenata	ANCESTRAL SPECIES	42	ENSGT00390000003478 #7	ENSGT00730000111231 #8	ENSGT00940000158081 #9	ENSGT00410000025695.b #10	ENSGT00390000002913 #11	ENSGT00940000158163 #12	ENSGT00390000000672.a.a #13	ENSGT00940000160699 #14	ENSGT00390000014856 #15	ENSGT00940000160753 #16	ENSGT00390000017748 #17	ENSGT00940000158649 #18	ENSGT00940000160926 #19	ENSGT00390000012913.a #20	ENSGT00410000025695.a #21	ENSGT00390000012198 #22	ENSGT00390000004097.a #23	ENSGT00940000160464 #24	ENSGT00390000000719 #25	ENSGT00390000007227.b #26	ENSGT00390000008152.B.a #27	ENSGT00940000162643 #28	ENSGT01050000244941.B.c	ENSGT00950000183110.a	ENSGT00550000075064
Xenarthra	ANCESTRAL SPECIES																	ENSGT00390000012198 #22
Armadillo	MODERN SPECIES	3781																ENSDNOG00000045167 #22
Afrotheria	ANCESTRAL SPECIES	45	ENSGT00390000003478 #7	ENSGT00730000111231 #8	ENSGT00940000158081 #9	ENSGT00410000025695.b #10	ENSGT00390000002913 #11	ENSGT00940000158163 #12	ENSGT00390000000672.a.a #13	ENSGT00940000160699 #14	ENSGT00390000014856 #15	ENSGT00940000160753 #16	ENSGT00390000017748 #17	ENSGT00940000158649 #18	ENSGT00940000160926 #19	ENSGT00390000012913.a #20	ENSGT00410000025695.a #21	ENSGT00390000012198 #22	ENSGT00390000004097.a #23	ENSGT00940000160464 #24	ENSGT00390000000719 #25	ENSGT00390000007227.b #26	ENSGT00390000008152.B.a #27	ENSGT00940000162643 #28	ENSGT01050000244941.B.c	ENSGT00950000183110.a	ENSGT00550000075064
Tenrec	MODERN SPECIES	12199																ENSETEG00000002531 #22
Afrotheria_a	ANCESTRAL SPECIES	44	ENSGT00390000003478 #7	ENSGT00730000111231 #8	ENSGT00940000158081 #9	ENSGT00410000025695.b #10	ENSGT00390000002913 #11	ENSGT00940000158163 #12	ENSGT00390000000672.a.a #13	ENSGT00940000160699 #14	ENSGT00390000014856 #15	ENSGT00940000160753 #16	ENSGT00390000017748 #17	ENSGT00940000158649 #18	ENSGT00940000160926 #19	ENSGT00390000012913.a #20	ENSGT00410000025695.a #21	ENSGT00390000012198 #22	ENSGT00390000004097.a #23	ENSGT00940000160464 #24	ENSGT00390000000719 #25	ENSGT00390000007227.b #26	ENSGT00390000008152.B.a #27	ENSGT00940000162643 #28	ENSGT01050000244941.B.c	ENSGT00950000183110.a	ENSGT00550000075064
Elephant	MODERN SPECIES	270	HOMER3 (ENSLAFG00000002936) #9	CRLF1 (ENSLAFG00000008358)	SUGP2 (ENSLAFG00000018646) #10	ARMC6 (ENSLAFG00000021876) #11	SLC25A42 (ENSLAFG00000003608) #12	TMEM161A (ENSLAFG00000012976) #13	MEF2B (ENSLAFG00000029184) #14	ENSLAFG00000026493	BORCS8 (ENSLAFG00000031264) #15	RFXANK (ENSLAFG00000017554) #16	NR2C2AP (ENSLAFG00000017559) #17	NCAN (ENSLAFG00000015356) #18	HAPLN4 (ENSLAFG00000031107) #19	TM6SF2 (ENSLAFG00000021853) #20	SUGP1 (ENSLAFG00000017363) #21	MAU2 (ENSLAFG00000021412) #22	GATAD2A (ENSLAFG00000009470) #23	TSSK6 (ENSLAFG00000027015) #24	NDUFA13 (ENSLAFG00000022064) #25	YJEFN3 (ENSLAFG00000009481) #26	CILP2 (ENSLAFG00000025674) #27	LPAR2 (ENSLAFG00000008384)	GMIP (ENSLAFG00000008389)	ATP13A1 (ENSLAFG00000008396)	ENSLAFG00000030867	ENSLAFG00000031243	ENSLAFG00000025891	KLHL17 (ENSLAFG00000003167)	ENSLAFG00000003168	ENSLAFG00000028505	ISG15 (ENSLAFG00000015773)
Hyrax	MODERN SPECIES	6558													HAPLN4 (ENSPCAG00000014625) #19	TM6SF2 (ENSPCAG00000014712) #20	SUGP1 (ENSPCAG00000014760) #21	MAU2 (ENSPCAG00000014835) #22
Marsupialia	ANCESTRAL SPECIES	1	ENSGT00940000161213	ENSGT00390000005318.a	ENSGT00390000004282	ENSGT00950000183104.B.a.a	ENSGT00500000044957	ENSGT01000000216439	ENSGT00950000182916.a.a	ENSGT00940000154929.B	ENSGT00390000014856 #15	ENSGT00940000160753 #16	ENSGT00390000017748 #17	ENSGT00940000158649 #18	ENSGT00940000160926 #19	ENSGT00390000012913.a #20	ENSGT00410000025695.a #21	ENSGT00390000012198 #22	ENSGT00390000004097.a #23	ENSGT00940000160464 #24	ENSGT00390000000719 #25	ENSGT00390000007227.b #26	ENSGT00390000008152.B.a #27	ENSGT00940000162014.e.a.b	ENSGT00940000162014.e.a.a	ENSGT00940000162014.e.b.a.a	ENSGT00940000162014.f	ENSGT00940000159972	ENSGT00390000003207	ENSGT00940000162117	ENSGT00940000162852.a	ENSGT01030000234635.a.a.a.b	ENSGT00940000158035
Opossum	MODERN SPECIES	2	ENSMODG00000006869	HMG20B (ENSMODG00000006884)	MFSD12 (ENSMODG00000006897)	ENSMODG00000047578	FZR1 (ENSMODG00000006919)	DOHH (ENSMODG00000006927)	NFIC (ENSMODG00000006935)	ENSMODG00000006976	BORCS8 (ENSMODG00000006986) #15	RFXANK (ENSMODG00000007002) #16	NR2C2AP (ENSMODG00000047700) #17	ENSMODG00000028358 #18	HAPLN4 (ENSMODG00000007055) #19	TM6SF2 (ENSMODG00000007077) #20	SUGP1 (ENSMODG00000007089) #21	MAU2 (ENSMODG00000007162) #22	GATAD2A (ENSMODG00000007189) #23	TSSK6 (ENSMODG00000023787) #24	NDUFA13 (ENSMODG00000007201) #25	YJEFN3 (ENSMODG00000007212) #26	CILP2 (ENSMODG00000007229) #27	ENSMODG00000007234	ENSMODG00000050615	ENSMODG00000023786	ENSMODG00000007250	ENSMODG00000046547	ENSMODG00000040491	ENSMODG00000023782	ENSMODG00000007347	ENSMODG00000046972	ENSMODG00000049807
Marsupialia_b	ANCESTRAL SPECIES	2	ENSGT00940000161213	ENSGT00390000005318.a	ENSGT00390000004282	ENSGT00950000183104.B.a.a	ENSGT00500000044957	ENSGT01000000216439	ENSGT00950000182916.a.a	ENSGT00940000154929.B	ENSGT00390000014856 #15	ENSGT00940000160753 #16	ENSGT00390000017748 #17	ENSGT00940000158649 #18	ENSGT00940000160926 #19	ENSGT00390000012913.a #20	ENSGT00410000025695.a #21	ENSGT00390000012198 #22	ENSGT00390000004097.a #23	ENSGT00940000160464 #24	ENSGT00390000000719 #25	ENSGT00390000007227.b #26	ENSGT00390000008152.B.a #27	ENSGT00940000162014.e.a.b	ENSGT00940000162014.e.a.a	ENSGT00940000162014.e.b.a.a	ENSGT00940000162014.f.b.a	ENSGT00940000159972	ENSGT00390000003207	ENSGT00940000162117	ENSGT00940000162852.a	ENSGT01030000234635.a.a.a.b	ENSGT00940000158035
Diprotodontia	ANCESTRAL SPECIES	20	ENSGT00940000161213	ENSGT00390000005318.a	ENSGT00390000004282	ENSGT00950000183104.B.a.a	ENSGT00500000044957	ENSGT01000000216439	ENSGT00950000182916.a.a	ENSGT00940000154929.B	ENSGT00390000014856 #15	ENSGT00940000160753 #16	ENSGT00390000017748 #17	ENSGT00940000158649 #18	ENSGT00940000160926 #19	ENSGT00390000012913.a #20	ENSGT00410000025695.a #21	ENSGT00390000012198 #22	ENSGT00390000004097.a #23	ENSGT00940000160464 #24	ENSGT00390000000719 #25	ENSGT00390000007227.b #26	ENSGT00390000008152.B.a #27	ENSGT00940000162014.e.a.a	ENSGT00940000162014.e.b.a.a	ENSGT00940000162014.f.b.a	ENSGT00940000159972	ENSGT00390000003207	ENSGT00940000162117	ENSGT00940000162852.a	ENSGT01030000234635.a.a.a.b	ENSGT00940000158035	ENSGT01100000263561.C.e
Wallaby	MODERN SPECIES	30															SUGP1 (ENSMEUG00000013320) #21	MAU2 (ENSMEUG00000013331) #22
Diprotodontia_a	ANCESTRAL SPECIES	16	ENSGT00940000161213	ENSGT00390000005318.a	ENSGT00390000004282	ENSGT00950000183104.B.a.a	ENSGT00500000044957	ENSGT01000000216439	ENSGT00950000182916.a.a	ENSGT00940000154929.B	ENSGT00390000014856 #15	ENSGT00940000160753.a #16	ENSGT00390000017748 #17	ENSGT00940000158649 #18	ENSGT00940000160926 #19	ENSGT00390000012913.a #20	ENSGT00410000025695.a #21	ENSGT00390000012198 #22	ENSGT00390000004097.a #23	ENSGT00940000160464 #24	ENSGT00390000000719 #25	ENSGT00390000007227.b #26	ENSGT00390000008152.B.a #27	ENSGT00940000162014.e.a.a	ENSGT00940000162014.e.b.a.a	ENSGT00940000162014.f.b.a	ENSGT00940000159972	ENSGT00390000003207	ENSGT00940000162117	ENSGT00940000162852.a	ENSGT01030000234635.a.a.a.b	ENSGT00940000158035	ENSGT01100000263561.C.e
koala	MODERN SPECIES	190	HMG20B (ENSPCIG00000025343)	MFSD12 (ENSPCIG00000025337)	ENSPCIG00000033355	FZR1 (ENSPCIG00000025330)	DOHH (ENSPCIG00000025326)	ENSPCIG00000033895	ENSPCIG00000025322	ENSPCIG00000024267	BORCS8 (ENSPCIG00000024230) #15	ENSPCIG00000024222 #16	NR2C2AP (ENSPCIG00000024227) #17	NCAN (ENSPCIG00000024219) #18	HAPLN4 (ENSPCIG00000024218) #19	TM6SF2 (ENSPCIG00000024217) #20	SUGP1 (ENSPCIG00000031015) #21	MAU2 (ENSPCIG00000024186) #22	GATAD2A (ENSPCIG00000024189) #23	NDUFA13 (ENSPCIG00000024191) #25	YJEFN3 (ENSPCIG00000024192) #26	CILP2 (ENSPCIG00000024194) #27	ENSPCIG00000027489	ENSPCIG00000032437	ENSPCIG00000031404	ENSPCIG00000011974	SLC1A6 (ENSPCIG00000003178)	CCDC105 (ENSPCIG00000003198)	ENSPCIG00000003213	CASP14 (ENSPCIG00000003224)	OR1I1 (ENSPCIG00000003241)	SYDE1 (ENSPCIG00000003261)	ILVBL (ENSPCIG00000003271)
Tasmanian devil	MODERN SPECIES		PIP5K1C (ENSSHAG00000004499)	ENSSHAG00000006050	TBXA2R (ENSSHAG00000006677)	HMG20B (ENSSHAG00000007226)	MFSD12 (ENSSHAG00000007626)	FZR1 (ENSSHAG00000007954)	DOHH (ENSSHAG00000008794)	ENSSHAG00000008822	ENSSHAG00000010759	ENSSHAG00000031648 #15	ENSSHAG00000026063 #16	ENSSHAG00000011784 #18	HAPLN4 (ENSSHAG00000012102) #19	TM6SF2 (ENSSHAG00000012199) #20	SUGP1 (ENSSHAG00000012361) #21	MAU2 (ENSSHAG00000012602) #22	GATAD2A (ENSSHAG00000013178) #23	NDUFA13 (ENSSHAG00000031151) #25	TSSK6 (ENSSHAG00000001334) #24	ENSSHAG00000003518 #26	ENSSHAG00000022278 #27	ENSSHAG00000004029	ENSSHAG00000024947	ENSSHAG00000020667	ENSSHAG00000025267	ENSSHAG00000026593	ENSSHAG00000021148	ENSSHAG00000029122	ENSSHAG00000026661	ENSSHAG00000027731	ENSSHAG00000030409
Platypus	DUPLICATION
Platypus	MODERN SPECIES	84	ENSOANG00000004573	ENSOANG00000043871	SUGP2 (ENSOANG00000004574) #10	ARMC6 (ENSOANG00000045954) #11	SLC25A42 (ENSOANG00000001030) #12	TMEM161A (ENSOANG00000011575) #13	MEF2B (ENSOANG00000010126) #14	ENSOANG00000046511	BORCS8 (ENSOANG00000043258) #15	ENSOANG00000003658 #16	NR2C2AP (ENSOANG00000040380) #17	ENSOANG00000032130 #18	HAPLN4 (ENSOANG00000029891) #19	TM6SF2 (ENSOANG00000012176) #20	SUGP1 (ENSOANG00000030496) #21	ENSOANG00000012450 #22	GATAD2A (ENSOANG00000006409) #23	ENSOANG00000011547 #24	ENSOANG00000045026 #25	YJEFN3 (ENSOANG00000051046) #26	CILP2 (ENSOANG00000046610) #27	ENSOANG00000007382	GTPBP3 (ENSOANG00000013734)	ANO8 (ENSOANG00000013731)	ENSOANG00000037822	ENSOANG00000040368	ENSOANG00000050876	ABHD8 (ENSOANG00000014712)	ENSOANG00000039006	BABAM1 (ENSOANG00000041344)	ENSOANG00000008074
Platypus	MODERN SPECIES	26															ENSOANG00000051265	ENSOANG00000045044 #22	ENSOANG00000044739	ENSOANG00000037590	ENSOANG00000047701	ENSOANG00000039593	ENSOANG00000048543
Sauria	ANCESTRAL SPECIES	20	ENSGT00940000158081 #9	ENSGT00940000167763	ENSGT00410000025695.b #10	ENSGT00390000002913 #11	ENSGT00940000158163 #12	ENSGT00390000000672.a.a #13	ENSGT00940000160699 #14	ENSGT00940000165199	ENSGT00390000014856 #15	ENSGT00940000160753 #16	ENSGT00390000017748 #17	ENSGT00940000158649 #18	ENSGT00940000160926 #19	ENSGT00390000012913.a #20	ENSGT00410000025695.a #21	ENSGT00390000012198 #22	ENSGT01060000249150	ENSGT00390000004097.a #23	ENSGT00390000000719 #25	ENSGT00960000189525	ENSGT00390000007227.b #26	ENSGT00390000008152.B.a #27	ENSGT00970000194286	ENSGT00390000006166	ENSGT00390000016851	ENSGT00940000157019	ENSGT00390000007029	ENSGT00390000012240	ENSGT00390000007336	ENSGT00510000049316	ENSGT00390000016934
Lepidosauria	ANCESTRAL SPECIES	35	ENSGT00940000167763	ENSGT00940000158081.m.b #9	ENSGT00410000025695.b #10	ENSGT00390000002913 #11	ENSGT00940000158163 #12	ENSGT00390000000672.a.a #13	ENSGT00940000160699 #14	ENSGT00940000165199	ENSGT00390000014856 #15	ENSGT00940000160753 #16	ENSGT00390000017748 #17	ENSGT00940000158649 #18	ENSGT00940000160926 #19	ENSGT00390000012913.a #20	ENSGT00410000025695.a #21	ENSGT00390000012198 #22	ENSGT00390000004097.a #23	ENSGT00390000000719 #25	ENSGT00390000007227.b #26	ENSGT00390000008152.B.a #27	ENSGT00390000006166	ENSGT00390000016851	ENSGT00940000157019	ENSGT00390000007029	ENSGT00390000012240	ENSGT00390000007336	ENSGT00510000049316	ENSGT00390000016934	ENSGT00530000063974.a	ENSGT00940000160748	ENSGT00940000165052
Episquamata	ANCESTRAL SPECIES	18	ENSGT00940000158081.m.a #9	ENSGT00940000167763	ENSGT00410000025695.b #10	ENSGT00390000002913 #11	ENSGT00940000158163 #12	ENSGT00390000000672.a.a #13	ENSGT00940000160699 #14	ENSGT00940000165199	ENSGT00390000014856 #15	ENSGT00940000160753 #16	ENSGT00390000017748 #17	ENSGT00940000158649 #18	ENSGT00940000160926 #19	ENSGT00390000012913.a #20	ENSGT00410000025695.a #21	ENSGT00390000012198 #22	ENSGT00390000004097.a #23	ENSGT00390000000719 #25	ENSGT00390000013329	ENSGT00940000161021	ENSGT00390000000289	ENSGT00530000064192	ENSGT00940000156705	ENSGT00950000185241.b	ENSGT00670000098179	ENSGT00440000039287.a.a	ENSGT00940000163012	ENSGT00940000164108.b	ENSGT00940000159185	ENSGT00940000158404	ENSGT00940000158870
Toxicofera	ANCESTRAL SPECIES	31	ENSGT00940000158081.m.a #9	ENSGT00940000167763	ENSGT00410000025695.b #10	ENSGT00390000002913 #11	ENSGT00940000158163 #12	ENSGT00390000000672.a.a #13	ENSGT00940000160699 #14	ENSGT00940000165199	ENSGT00390000014856 #15	ENSGT00940000160753 #16	ENSGT00390000017748 #17	ENSGT00940000158649 #18	ENSGT00940000160926 #19	ENSGT00390000012913.a #20	ENSGT00410000025695.a #21	ENSGT00390000012198 #22	ENSGT00390000004097.a #23	ENSGT00390000000719 #25	ENSGT00390000013329	ENSGT00940000161021	ENSGT00390000000289	ENSGT00530000064192	ENSGT00940000156705	ENSGT00950000185241.b	ENSGT00670000098179	ENSGT00440000039287.a.a	ENSGT00940000163012	ENSGT00940000159185	ENSGT00940000158404	ENSGT00940000158870	ENSGT00940000159808
Elapidae	ANCESTRAL SPECIES	3	ENSGT00940000158081.m.a #9	ENSGT00940000167763	ENSGT00410000025695.b #10	ENSGT00390000002913 #11	ENSGT00940000158163 #12	ENSGT00390000000672.a.a #13	ENSGT00940000160699 #14	ENSGT00940000165199	ENSGT00390000014856 #15	ENSGT00940000160753 #16	ENSGT00390000017748 #17	ENSGT00940000158649 #18	ENSGT00940000160926 #19	ENSGT00390000012913.a #20	ENSGT00410000025695.a #21	ENSGT00390000012198 #22	ENSGT00390000004097.a #23	ENSGT00390000000719.d #25	ENSGT00390000013329	ENSGT00940000161021	ENSGT00390000000289	ENSGT00530000064192	ENSGT00940000156705	ENSGT00950000185241.b	ENSGT00670000098179	ENSGT00440000039287.a.a	ENSGT00940000163012.b	ENSGT00940000163012.a	ENSGT00940000159185	ENSGT00940000158404	ENSGT00940000158870
Elapidae_a	ANCESTRAL SPECIES	10	ENSGT00940000167763	ENSGT00410000025695.b #10	ENSGT00390000002913 #11	ENSGT00940000158163 #12	ENSGT00390000000672.a.a #13	ENSGT00940000160699 #14	ENSGT00940000165199	ENSGT00950000185950	ENSGT00390000014856 #15	ENSGT00940000160753 #16	ENSGT00390000017748 #17	ENSGT00940000158649 #18	ENSGT00940000160926 #19	ENSGT00390000012913.a #20	ENSGT00410000025695.a #21	ENSGT00390000012198 #22	ENSGT00390000004097.a #23	ENSGT00390000000719.d #25	ENSGT00390000013329	ENSGT00940000161021	ENSGT00390000000289	ENSGT00530000064192	ENSGT00940000156705	ENSGT00670000098179	ENSGT00440000039287.a.a	ENSGT00940000163012.b	ENSGT00940000163012.a	ENSGT00940000159185	ENSGT00940000158404	ENSGT00940000158870	ENSGT00940000159808
Acanthophiinae	ANCESTRAL SPECIES	13	ENSGT00940000158081.m.a #9	ENSGT00940000167763	ENSGT00410000025695.b #10	ENSGT00390000002913 #11	ENSGT00940000158163 #12	ENSGT00390000000672.a.a #13	ENSGT00940000160699 #14	ENSGT00940000165199	ENSGT00390000014856 #15	ENSGT00940000160753 #16	ENSGT00390000017748 #17	ENSGT00940000158649 #18	ENSGT00940000160926 #19	ENSGT00390000012913.a #20	ENSGT00410000025695.a #21	ENSGT00390000012198 #22	ENSGT00390000004097.a #23	ENSGT00390000000719.d #25	ENSGT00390000013329	ENSGT00940000161021	ENSGT00390000000289	ENSGT00530000064192	ENSGT00940000156705	ENSGT00670000098179	ENSGT00940000163012.b	ENSGT00940000163012.a	ENSGT00940000159185	ENSGT00940000158404	ENSGT00940000158870	ENSGT00940000159808	ENSGT00390000006337
Mainland tiger snake	MODERN SPECIES	191	ENSNSUG00000017139	SUGP2 (ENSNSUG00000017147) #10	ARMC6 (ENSNSUG00000017148) #11	SLC25A42 (ENSNSUG00000017149) #12	TMEM161A (ENSNSUG00000017150) #13	ENSNSUG00000017154 #14	ENSNSUG00000017155	BORCS8 (ENSNSUG00000017157) #15	RFXANK (ENSNSUG00000017158) #16	NR2C2AP (ENSNSUG00000017177) #17	ENSNSUG00000017178 #18	ENSNSUG00000017179 #18	HAPLN4 (ENSNSUG00000017180) #19	TM6SF2 (ENSNSUG00000017181) #20	SUGP1 (ENSNSUG00000017182) #21	MAU2 (ENSNSUG00000017183) #22	GATAD2A (ENSNSUG00000017263) #23	ENSNSUG00000017264 #25	TMEM259 (ENSNSUG00000017266)	GRIN3B (ENSNSUG00000017267)	WDR18 (ENSNSUG00000017269)	ENSNSUG00000017283	FKBP8 (ENSNSUG00000017284)	ENSNSUG00000017285	ENSNSUG00000017286
Eastern brown snake	MODERN SPECIES	10	ENSPTXG00000002371	SUGP2 (ENSPTXG00000002368) #10	ARMC6 (ENSPTXG00000002367) #11	SLC25A42 (ENSPTXG00000002364) #12	TMEM161A (ENSPTXG00000002360) #13	MEF2B (ENSPTXG00000002356) #14	ENSPTXG00000002354	BORCS8 (ENSPTXG00000002351) #15	RFXANK (ENSPTXG00000002349) #16	NR2C2AP (ENSPTXG00000002344) #17	ENSPTXG00000002343 #18	ENSPTXG00000002340 #18	ENSPTXG00000002338 #19	TM6SF2 (ENSPTXG00000002337) #20	SUGP1 (ENSPTXG00000002335) #21	MAU2 (ENSPTXG00000002334) #22	GATAD2A (ENSPTXG00000002333) #23	ENSPTXG00000002332 #25	TMEM259 (ENSPTXG00000002329)	GRIN3B (ENSPTXG00000002248)	WDR18 (ENSPTXG00000002244)	FKBP8 (ENSPTXG00000002241)	ENSPTXG00000002240	ENSPTXG00000002239	ENSPTXG00000002236	ENSPTXG00000002235	ZAP70 (ENSPTXG00000002233)	ADAMTS10 (ENSPTXG00000002208)	MYO1F (ENSPTXG00000002198)	OAZ1 (ENSPTXG00000002197)	AMH (ENSPTXG00000002079)
Blue-lipped sea krait	MODERN SPECIES	3764																MAU2 (ENSLLTG00000002616) #22
Indian cobra	MODERN SPECIES		HOMER3 (ENSNNAG00000001848) #9	ENSNNAG00000001830	SUGP2 (ENSNNAG00000001797) #10	ARMC6 (ENSNNAG00000001775) #11	SLC25A42 (ENSNNAG00000001764) #12	TMEM161A (ENSNNAG00000001750) #13	ENSNNAG00000001734 #14	BORCS8 (ENSNNAG00000001727) #15	RFXANK (ENSNNAG00000001702) #16	NR2C2AP (ENSNNAG00000001682) #17	NCAN (ENSNNAG00000001611) #18	HAPLN4 (ENSNNAG00000001578) #19	ENSNNAG00000001558	TM6SF2 (ENSNNAG00000001539) #20	SUGP1 (ENSNNAG00000001518) #21	MAU2 (ENSNNAG00000001497) #22	GATAD2A (ENSNNAG00000001467) #23	NDUFA13 (ENSNNAG00000001445) #25	TMEM259 (ENSNNAG00000001408)	GRIN3B (ENSNNAG00000001337)	WDR18 (ENSNNAG00000001289)	KXD1 (ENSNNAG00000001270)	FKBP8 (ENSNNAG00000001152)	ENSNNAG00000001115	ENSNNAG00000001099	ENSNNAG00000001070	ENSNNAG00000001061	ENSNNAG00000001047	ZAP70 (ENSNNAG00000000997)	ADAMTS10 (ENSNNAG00000000892)	MYO1F (ENSNNAG00000000832)
Lizard	MODERN SPECIES	420																ENSACAG00000003122 #22
Laterata	ANCESTRAL SPECIES	37	ENSGT00940000158081.m.a #9	ENSGT00940000167763	ENSGT00410000025695.b #10	ENSGT00390000002913 #11	ENSGT00940000158163 #12	ENSGT00390000000672.a.a #13	ENSGT00940000160699 #14	ENSGT00940000165199	ENSGT00390000014856 #15	ENSGT00940000160753 #16	ENSGT00390000017748 #17	ENSGT00940000158649 #18	ENSGT00940000160926 #19	ENSGT00390000012913.a #20	ENSGT00410000025695.a #21	ENSGT00390000012198 #22	ENSGT00390000004097.a #23	ENSGT00390000000719 #25	ENSGT00390000013329	ENSGT00940000161021	ENSGT00390000000289	ENSGT00530000064192	ENSGT00940000156705	ENSGT00950000185241.b	ENSGT00670000098179	ENSGT00960000192150	ENSGT00940000163012	ENSGT00940000164108.b	ENSGT00940000159185	ENSGT00940000158404	ENSGT00940000158870
Argentine black and white tegu	MODERN SPECIES	106	ENSSMRG00000002610	ENSSMRG00000002608	ADAMTS10 (ENSSMRG00000000856)	ZAP70 (ENSSMRG00000000789)	ACTL9 (ENSSMRG00000000784)	ENSSMRG00000000723	ENSSMRG00000000700	ENSSMRG00000000683	FKBP8 (ENSSMRG00000000670)	KXD1 (ENSSMRG00000000652)	WDR18 (ENSSMRG00000000620)	GRIN3B (ENSSMRG00000000601)	TMEM259 (ENSSMRG00000000592)	NDUFA13 (ENSSMRG00000000580) #25	GATAD2A (ENSSMRG00000000536) #23	MAU2 (ENSSMRG00000000406) #22	SUGP1 (ENSSMRG00000000352) #21	TM6SF2 (ENSSMRG00000000324) #20	HAPLN4 (ENSSMRG00000000158) #19	NCAN (ENSSMRG00000000110) #18	NR2C2AP (ENSSMRG00000000094) #17	RFXANK (ENSSMRG00000000051) #16	BORCS8 (ENSSMRG00000000033) #15	ENSSMRG00000022975	MEF2B (ENSSMRG00000022974) #14	TMEM161A (ENSSMRG00000022973) #13	SLC25A42 (ENSSMRG00000022972) #12	ARMC6 (ENSSMRG00000022971) #11	SUGP2 (ENSSMRG00000022970) #10	ENSSMRG00000022969	HOMER3 (ENSSMRG00000022968) #9
Common wall lizard	MODERN SPECIES	9	ENSPMRG00000021729 #11	ENSPMRG00000021726	ENSPMRG00000021724	ENSPMRG00000021717 #11	SLC25A42 (ENSPMRG00000021711) #12	TMEM161A (ENSPMRG00000021702) #13	MEF2B (ENSPMRG00000021693) #14	ENSPMRG00000021689	ENSPMRG00000021683	RFXANK (ENSPMRG00000021677) #16	NR2C2AP (ENSPMRG00000021664) #17	NCAN (ENSPMRG00000021434) #18	HAPLN4 (ENSPMRG00000021383) #19	TM6SF2 (ENSPMRG00000021377) #20	SUGP1 (ENSPMRG00000021319) #21	MAU2 (ENSPMRG00000021003) #22	GATAD2A (ENSPMRG00000020959) #23	NDUFA13 (ENSPMRG00000020953) #25	TMEM259 (ENSPMRG00000020879)	GRIN3B (ENSPMRG00000020765)	WDR18 (ENSPMRG00000020734)	KXD1 (ENSPMRG00000020710)	ENSPMRG00000020696	ENSPMRG00000020692	FKBP8 (ENSPMRG00000020683)	ENSPMRG00000020672	ACTL9 (ENSPMRG00000020665)	ENSPMRG00000020659	ENSPMRG00000020652	ENSPMRG00000020648	ENSPMRG00000020641
tuatara	MODERN SPECIES	1387					SLC25A42 (ENSSPUG00000008044) #12	TMEM161A (ENSSPUG00000008031) #13	ENSSPUG00000008020 #14	ENSSPUG00000008012	BORCS8 (ENSSPUG00000008006) #15	RFXANK (ENSSPUG00000007991) #16	NR2C2AP (ENSSPUG00000007984) #17	NCAN (ENSSPUG00000007934) #18	HAPLN4 (ENSSPUG00000007909) #19	TM6SF2 (ENSSPUG00000007875) #20	SUGP1 (ENSSPUG00000007840) #21	MAU2 (ENSSPUG00000007521) #22	GATAD2A (ENSSPUG00000007455) #23	NDUFA13 (ENSSPUG00000007419) #25	YJEFN3 (ENSSPUG00000007394) #26	ENSSPUG00000007338	GTPBP3 (ENSSPUG00000007326)	DDA1 (ENSSPUG00000007270)	MRPL34 (ENSSPUG00000007265)	ABHD8 (ENSSPUG00000007232)	BABAM1 (ENSSPUG00000007222)	NR2F6 (ENSSPUG00000007214)	ENSSPUG00000007197	KCNN1 (ENSSPUG00000007182)	CCDC124 (ENSSPUG00000007177)	SLC5A5 (ENSSPUG00000007125)	JAK3 (ENSSPUG00000007088)
Archelosauria	ANCESTRAL SPECIES	20	ENSGT00940000158081 #9	ENSGT00940000167763	ENSGT00410000025695.b #10	ENSGT00390000002913 #11	ENSGT00940000158163 #12	ENSGT00390000000672.a.a #13	ENSGT00940000160699 #14	ENSGT00940000165199	ENSGT00390000014856 #15	ENSGT00940000160753 #16	ENSGT00390000017748 #17	ENSGT00940000158649 #18	ENSGT00940000160926 #19	ENSGT00390000012913.a #20	ENSGT00410000025695.a #21	ENSGT00390000012198 #22	ENSGT01060000249150	ENSGT00390000004097.a #23	ENSGT00390000000719 #25	ENSGT00960000189525	ENSGT00390000007227.b #26	ENSGT00390000008152.B.a #27	ENSGT00390000006166	ENSGT00390000016851	ENSGT00940000157019	ENSGT00390000007029	ENSGT00390000012240	ENSGT00390000007336	ENSGT00510000049316	ENSGT00390000016934	ENSGT00530000063974.a
Cryptodira	ANCESTRAL SPECIES	19	ENSGT00940000158081 #9	ENSGT00940000167763	ENSGT00410000025695.b #10	ENSGT00390000002913 #11	ENSGT00940000158163 #12	ENSGT00390000000672.a.a #13	ENSGT00940000160699 #14	ENSGT00940000165199	ENSGT00390000014856 #15	ENSGT00940000160753 #16	ENSGT00390000017748 #17	ENSGT00940000158649 #18	ENSGT00940000160926 #19	ENSGT00390000012913.a #20	ENSGT00410000025695.a #21	ENSGT00390000012198 #22	ENSGT00390000004097.a #23	ENSGT00390000000719 #25	ENSGT00960000189525	ENSGT00390000007227.b #26	ENSGT00390000008152.B.a #27	ENSGT00390000006166	ENSGT00390000016851	ENSGT00940000157019	ENSGT00390000007029	ENSGT00390000012240	ENSGT00390000007336	ENSGT00510000049316	ENSGT00390000016934	ENSGT00530000063974.a	ENSGT00940000160748
Testudinoidea	ANCESTRAL SPECIES	18	ENSGT00940000158081 #9	ENSGT00940000167763	ENSGT00410000025695.b #10	ENSGT00390000002913 #11	ENSGT00940000158163 #12	ENSGT00390000000672.a.a #13	ENSGT00940000160699 #14	ENSGT00940000165199	ENSGT00390000014856 #15	ENSGT00940000160753 #16	ENSGT00390000017748 #17	ENSGT00940000158649 #18	ENSGT00940000160926 #19	ENSGT00390000012913.a #20	ENSGT00410000025695.a #21	ENSGT00390000012198 #22	ENSGT00390000004097.a #23	ENSGT00390000000719 #25	ENSGT00960000189525	ENSGT00390000007227.b #26	ENSGT00390000008152.B.a #27	ENSGT00390000006166	ENSGT00390000016851	ENSGT00940000157019	ENSGT00390000007029	ENSGT00390000012240	ENSGT00390000007336	ENSGT00510000049316	ENSGT00390000016934	ENSGT00530000063974.a	ENSGT00940000160748
Emydidae	ANCESTRAL SPECIES	14	ENSGT00940000158081 #9	ENSGT00940000167763	ENSGT00410000025695.b #10	ENSGT00390000002913 #11	ENSGT00940000158163 #12	ENSGT00390000000672.a.a #13	ENSGT00940000160699 #14	ENSGT00940000165199	ENSGT00390000014856 #15	ENSGT00940000160753 #16	ENSGT00390000017748 #17	ENSGT00940000158649 #18	ENSGT00940000160926 #19	ENSGT00390000012913.a #20	ENSGT00410000025695.a #21	ENSGT00390000012198 #22	ENSGT00390000004097.a #23	ENSGT00390000000719 #25	ENSGT00390000007227.b #26	ENSGT00390000008152.B.a #27	ENSGT00390000006166	ENSGT00390000016851	ENSGT00940000157019	ENSGT00390000007029	ENSGT00390000012240	ENSGT00390000007336	ENSGT00510000049316	ENSGT00390000016934	ENSGT00940000160748	ENSGT00940000165052	ENSGT00950000182904.a.b.b
painted turtle	MODERN SPECIES	771	HOMER3 (ENSCPBG00000012496) #9	ENSCPBG00000012490	SUGP2 (ENSCPBG00000012487) #10	ARMC6 (ENSCPBG00000012485) #11	SLC25A42 (ENSCPBG00000012483) #12	TMEM161A (ENSCPBG00000012479) #13	MEF2B (ENSCPBG00000012471) #14	ENSCPBG00000012469	BORCS8 (ENSCPBG00000012467) #15	RFXANK (ENSCPBG00000012464) #16	NR2C2AP (ENSCPBG00000012463) #17	NCAN (ENSCPBG00000012461) #18	HAPLN4 (ENSCPBG00000012460) #19	TM6SF2 (ENSCPBG00000012458) #20	SUGP1 (ENSCPBG00000012455) #21	MAU2 (ENSCPBG00000012453) #22	GATAD2A (ENSCPBG00000012450) #23	YJEFN3 (ENSCPBG00000012447) #26	CILP2 (ENSCPBG00000012445) #27	ENSCPBG00000012437	GTPBP3 (ENSCPBG00000012434)	ANO8 (ENSCPBG00000012431)	DDA1 (ENSCPBG00000012426)	MRPL34 (ENSCPBG00000012424)	ABHD8 (ENSCPBG00000012422)	ANKLE1 (ENSCPBG00000012416)	BABAM1 (ENSCPBG00000012410)	NR2F6 (ENSCPBG00000012404)	ENSCPBG00000012402	ENSCPBG00000012401	KCNN1 (ENSCPBG00000012396)
Three-toed box turtle	MODERN SPECIES	92	HOMER3 (ENSTMTG00000012853) #9	ENSTMTG00000012889	SUGP2 (ENSTMTG00000012920) #10	ARMC6 (ENSTMTG00000012947) #11	SLC25A42 (ENSTMTG00000012962) #12	TMEM161A (ENSTMTG00000012984) #13	MEF2B (ENSTMTG00000013005) #14	ENSTMTG00000013028	BORCS8 (ENSTMTG00000013093) #15	RFXANK (ENSTMTG00000013105) #16	NR2C2AP (ENSTMTG00000013134) #17	NCAN (ENSTMTG00000013156) #18	HAPLN4 (ENSTMTG00000013225) #19	TM6SF2 (ENSTMTG00000013253) #20	SUGP1 (ENSTMTG00000013266) #21	MAU2 (ENSTMTG00000013280) #22	GATAD2A (ENSTMTG00000013318) #23	NDUFA13 (ENSTMTG00000013371) #25	YJEFN3 (ENSTMTG00000013384) #26	CILP2 (ENSTMTG00000003015) #27	ENSTMTG00000003038	GTPBP3 (ENSTMTG00000003053)	ANO8 (ENSTMTG00000003079)	DDA1 (ENSTMTG00000003127)	MRPL34 (ENSTMTG00000003147)	ABHD8 (ENSTMTG00000003154)	ANKLE1 (ENSTMTG00000003176)	BABAM1 (ENSTMTG00000003264)	ENSTMTG00000003274	NR2F6 (ENSTMTG00000003288)	ENSTMTG00000003298
Testudinidae	ANCESTRAL SPECIES	20	ENSGT00940000158081 #9	ENSGT00940000167763	ENSGT00410000025695.b #10	ENSGT00390000002913 #11	ENSGT00940000158163 #12	ENSGT00390000000672.a.a #13	ENSGT00940000160699 #14	ENSGT00940000165199	ENSGT00390000014856 #15	ENSGT00940000160753 #16	ENSGT00390000017748 #17	ENSGT00940000158649 #18	ENSGT00940000160926 #19	ENSGT00390000012913.a #20	ENSGT00410000025695.a #21	ENSGT00390000012198 #22	ENSGT00390000004097.a #23	ENSGT00390000000719.b #25	ENSGT00960000189525	ENSGT00390000000719.a #25	ENSGT00390000007227.b #26	ENSGT00390000008152.B.a #27	ENSGT00390000006166	ENSGT00390000016851	ENSGT00940000157019	ENSGT00390000007029	ENSGT00390000012240	ENSGT00390000007336	ENSGT00510000049316	ENSGT00390000016934	ENSGT00530000063974.a
Goode s thornscrub tortoise	MODERN SPECIES	14	HOMER3 (ENSGEVG00005004624) #9	ENSGEVG00005004681	SUGP2 (ENSGEVG00005004782) #10	ARMC6 (ENSGEVG00005004824) #11	SLC25A42 (ENSGEVG00005004855) #12	TMEM161A (ENSGEVG00005004899) #13	MEF2B (ENSGEVG00005004959) #14	ENSGEVG00005004987	BORCS8 (ENSGEVG00005005013) #15	RFXANK (ENSGEVG00005005039) #16	NR2C2AP (ENSGEVG00005005076) #17	NCAN (ENSGEVG00005005147) #18	HAPLN4 (ENSGEVG00005005235) #19	TM6SF2 (ENSGEVG00005005276) #20	SUGP1 (ENSGEVG00005005333) #21	MAU2 (ENSGEVG00005005539) #22	GATAD2A (ENSGEVG00005006074) #23	NDUFA13 (ENSGEVG00005006122) #25	YJEFN3 (ENSGEVG00005006180) #26	CILP2 (ENSGEVG00005006211) #27	GTPBP3 (ENSGEVG00005006249)	ANO8 (ENSGEVG00005006292)	DDA1 (ENSGEVG00005006430)	MRPL34 (ENSGEVG00005006469)	ABHD8 (ENSGEVG00005006483)	ANKLE1 (ENSGEVG00005006566)	BABAM1 (ENSGEVG00005006735)	NR2F6 (ENSGEVG00005006760)	ENSGEVG00005006786	ENSGEVG00005006831	KCNN1 (ENSGEVG00005006867)
Abingdon island giant tortoise	MODERN SPECIES					FLRT2 (ENSCABG00000004957)	SLC25A42 (ENSCABG00000004955) #12	TMEM161A (ENSCABG00000004904) #13	MEF2B (ENSCABG00000004901) #14	ENSCABG00000004899	BORCS8 (ENSCABG00000004894) #15	RFXANK (ENSCABG00000004891) #16	NR2C2AP (ENSCABG00000004889) #17	NCAN (ENSCABG00000004882) #18	HAPLN4 (ENSCABG00000004875) #19	TM6SF2 (ENSCABG00000004866) #20	SUGP1 (ENSCABG00000004858) #21	MAU2 (ENSCABG00000004254) #22	GATAD2A (ENSCABG00000004245) #23	ENSCABG00000004244 #25	ENSCABG00000004241	YJEFN3 (ENSCABG00000004238) #26	CILP2 (ENSCABG00000004232) #27	ENSCABG00000004225	GTPBP3 (ENSCABG00000004223)	ANO8 (ENSCABG00000004215)	DDA1 (ENSCABG00000004212)	MRPL34 (ENSCABG00000004210)	ABHD8 (ENSCABG00000004206)	ANKLE1 (ENSCABG00000004202)	BABAM1 (ENSCABG00000004192)	ENSCABG00000004188	NR2F6 (ENSCABG00000004185)
Chinese turtle	MODERN SPECIES	1790	HOMER3 (ENSPSIG00000008524) #9	ENSPSIG00000008490	SUGP2 (ENSPSIG00000008256) #10	ARMC6 (ENSPSIG00000008070) #11	SLC25A42 (ENSPSIG00000007452) #12	TMEM161A (ENSPSIG00000006789) #13	BORCS8 (ENSPSIG00000006585) #15	RFXANK (ENSPSIG00000017645) #16	NR2C2AP (ENSPSIG00000017608) #17	ENSPSIG00000001137	ENSPSIG00000017603	NCAN (ENSPSIG00000017408) #18	HAPLN4 (ENSPSIG00000017388) #19	TM6SF2 (ENSPSIG00000017375) #20	SUGP1 (ENSPSIG00000016889) #21	MAU2 (ENSPSIG00000016573) #22	GATAD2A (ENSPSIG00000015717) #23	NDUFA13 (ENSPSIG00000015655) #25	YJEFN3 (ENSPSIG00000015540) #26	CILP2 (ENSPSIG00000015529) #27	GTPBP3 (ENSPSIG00000015510)	DDA1 (ENSPSIG00000015105)	MRPL34 (ENSPSIG00000001128)	ABHD8 (ENSPSIG00000015080)	ANKLE1 (ENSPSIG00000014550)	BABAM1 (ENSPSIG00000014350)	NR2F6 (ENSPSIG00000013773)	ENSPSIG00000013072	KCNN1 (ENSPSIG00000013049)	CCDC124 (ENSPSIG00000013042)	SLC5A5 (ENSPSIG00000010196)
Archosauria	ANCESTRAL SPECIES	16	ENSGT00940000158081 #9	ENSGT00940000167763	ENSGT00410000025695.b #10	ENSGT00390000002913 #11	ENSGT00940000158163 #12	ENSGT00390000000672.a.a #13	ENSGT00940000160699 #14	ENSGT00940000165199	ENSGT00390000014856 #15	ENSGT00940000160753 #16	ENSGT00390000017748 #17	ENSGT00940000158649 #18	ENSGT00940000160926 #19	ENSGT00390000012913.a #20	ENSGT00410000025695.a #21	ENSGT00390000012198 #22	ENSGT01060000249150	ENSGT00390000004097.a #23	ENSGT00390000000719 #25	ENSGT00390000007227.b #26	ENSGT00390000008152.B.a #27	ENSGT00390000006166	ENSGT00390000016851	ENSGT00940000157019	ENSGT00390000007029	ENSGT00390000012240	ENSGT00390000007336	ENSGT00510000049316	ENSGT00390000016934	ENSGT00530000063974.a	ENSGT00940000160748
Australian saltwater crocodile	MODERN SPECIES	3	DDX49 (ENSCPRG00005015719) #8	HOMER3 (ENSCPRG00005015713) #9	ENSCPRG00005015709	SUGP2 (ENSCPRG00005015708) #10	ARMC6 (ENSCPRG00005015704) #11	SLC25A42 (ENSCPRG00005015701) #12	TMEM161A (ENSCPRG00005015699) #13	MEF2B (ENSCPRG00005015695) #14	ENSCPRG00005015692	BORCS8 (ENSCPRG00005015689) #15	RFXANK (ENSCPRG00005015684) #16	NR2C2AP (ENSCPRG00005015681) #17	HAPLN4 (ENSCPRG00005015677) #19	TM6SF2 (ENSCPRG00005015672) #20	SUGP1 (ENSCPRG00005015667) #21	MAU2 (ENSCPRG00005015658) #22	GATAD2A (ENSCPRG00005015653) #23	NDUFA13 (ENSCPRG00005015651) #25	YJEFN3 (ENSCPRG00005015647) #26	CARTPT (ENSCPRG00005015645)	ENSCPRG00005015644	GADD45B (ENSCPRG00005015639)	GNG7 (ENSCPRG00005015637)	DIRAS1 (ENSCPRG00005015632)	SLC39A3 (ENSCPRG00005015630)	SGTA (ENSCPRG00005015629)	THOP1 (ENSCPRG00005015627)	ENSCPRG00005015625	REEP6 (ENSCPRG00005015622)	PCSK4 (ENSCPRG00005015619)	C19orf25 (ENSCPRG00005015616)
Aves	ANCESTRAL SPECIES	20	ENSGT00940000158081 #9	ENSGT00940000167763	ENSGT00410000025695.b #10	ENSGT00390000002913 #11	ENSGT00940000158163 #12	ENSGT00390000000672.a.a #13	ENSGT00940000160699 #14	ENSGT00940000165199	ENSGT00390000014856 #15	ENSGT00940000160753 #16	ENSGT00390000017748 #17	ENSGT00940000158649 #18	ENSGT00940000160926 #19	ENSGT00390000012913.a #20	ENSGT00410000025695.a #21	ENSGT00390000012198 #22	ENSGT01060000249150	ENSGT00390000004097.a #23	ENSGT00390000000719 #25	ENSGT00390000007227.b #26	ENSGT00390000008152.B.a #27	ENSGT00390000006166	ENSGT00390000016851	ENSGT00940000157019	ENSGT00390000007029	ENSGT00390000012240	ENSGT00390000007336	ENSGT00510000049316	ENSGT00390000016934	ENSGT00530000063974.a	ENSGT00940000160748
African ostrich	MODERN SPECIES	1058										ENSSCUG00000019062	BORCS8 (ENSSCUG00000019063) #15	RFXANK (ENSSCUG00000019064) #16	NR2C2AP (ENSSCUG00000019065) #17	TM6SF2 (ENSSCUG00000019067) #20	SUGP1 (ENSSCUG00000019068) #21	MAU2 (ENSSCUG00000019069) #22	GATAD2A (ENSSCUG00000019070) #23
Neognathae	ANCESTRAL SPECIES	21	ENSGT00940000158081 #9	ENSGT00940000167763	ENSGT00410000025695.b #10	ENSGT00390000002913 #11	ENSGT00940000158163 #12	ENSGT00390000000672.a.a #13	ENSGT00940000160699 #14	ENSGT00940000165199	ENSGT00390000014856 #15	ENSGT00940000160753 #16	ENSGT00390000017748 #17	ENSGT00940000158649 #18	ENSGT00940000160926 #19	ENSGT00390000012913.a #20	ENSGT00410000025695.a #21	ENSGT00390000012198 #22	ENSGT01060000249150	ENSGT00390000004097.a #23	ENSGT00390000000719 #25	ENSGT00390000007227.b #26	ENSGT00390000008152.B.a #27	ENSGT00390000006166	ENSGT00390000016851	ENSGT00940000157019	ENSGT00390000007029	ENSGT00390000012240	ENSGT00390000007336	ENSGT00510000049316	ENSGT00390000016934	ENSGT00530000063974.a	ENSGT00940000160748
Galloanserae	ANCESTRAL SPECIES	20	ENSGT00940000158081 #9	ENSGT00940000167763	ENSGT00410000025695.b #10	ENSGT00390000002913 #11	ENSGT00940000158163 #12	ENSGT00390000000672.a.a #13	ENSGT00940000160699 #14	ENSGT00940000165199	ENSGT00390000014856 #15	ENSGT00940000160753 #16	ENSGT00390000017748 #17	ENSGT00940000158649.d #18	ENSGT00940000160926 #19	ENSGT00390000012913.a #20	ENSGT00410000025695.a #21	ENSGT00390000012198 #22	ENSGT00390000004097.a #23	ENSGT00390000000719 #25	ENSGT00390000007227.b #26	ENSGT00390000008152.B.a #27	ENSGT00970000194286	ENSGT00390000006166	ENSGT00390000016851	ENSGT00940000157019	ENSGT00390000007029	ENSGT00390000012240	ENSGT00390000007336	ENSGT00510000049316	ENSGT00390000016934	ENSGT00530000063974.a	ENSGT00940000160748
Anatidae	ANCESTRAL SPECIES	71	ENSGT00730000111231 #8	ENSGT00940000158081 #9	ENSGT00410000025695.b #10	ENSGT00390000002913 #11	ENSGT00940000158163 #12	ENSGT00390000000672.a.a #13	ENSGT00940000160699 #14	ENSGT00940000165199	ENSGT00390000014856 #15	ENSGT00940000160753 #16	ENSGT00390000017748 #17	ENSGT00940000158649.d #18	ENSGT00940000160926 #19	ENSGT00390000012913.a #20	ENSGT00410000025695.a #21	ENSGT00390000012198 #22	ENSGT00390000004097.a #23	ENSGT00390000000719 #25	ENSGT00390000007227.b #26	ENSGT00390000008152.B.a #27	ENSGT00390000006166
Pink-footed goose	MODERN SPECIES	308	DDX49 (ENSABRG00000003533) #8	HOMER3 (ENSABRG00000003480) #9	SUGP2 (ENSABRG00000003433) #10	ARMC6 (ENSABRG00000003410) #11	SLC25A42 (ENSABRG00000003394) #12	TMEM161A (ENSABRG00000003380) #13	MEF2B (ENSABRG00000003346) #14	ENSABRG00000003339	BORCS8 (ENSABRG00000003310) #15	RFXANK (ENSABRG00000003275) #16	ENSABRG00000003239 #17	NCAN (ENSABRG00000003206) #18	HAPLN4 (ENSABRG00000003196) #19	TM6SF2 (ENSABRG00000003169) #20	SUGP1 (ENSABRG00000003136) #21	MAU2 (ENSABRG00000003093) #22	GATAD2A (ENSABRG00000003048) #23	NDUFA13 (ENSABRG00000003036) #25	YJEFN3 (ENSABRG00000003014) #26	CILP2 (ENSABRG00000003000) #27	ENSABRG00000002971
Duck	MODERN SPECIES	20	UPF1 (ENSAPLG00000009175)	ENSAPLG00000009148	CERS1 (ENSAPLG00000008945)	COPE (ENSAPLG00000008757) #7	HOMER3 (ENSAPLG00000008170) #9	SUGP2 (ENSAPLG00000006469) #10	ARMC6 (ENSAPLG00000006480) #11	SLC25A42 (ENSAPLG00000006582) #12	TMEM161A (ENSAPLG00000006657) #13	ENSAPLG00000025930	RFXANK (ENSAPLG00000016423) #16	NR2C2AP (ENSAPLG00000016443) #17	ENSAPLG00000017029 #18	HAPLN4 (ENSAPLG00000000916) #19	SUGP1 (ENSAPLG00000002500) #21	MAU2 (ENSAPLG00000002818) #22	ENSAPLG00000019522	ENSAPLG00000020158	ENSAPLG00000006355	ENSAPLG00000005780	MICOS13 (ENSAPLG00000001598)	HSD11B1L (ENSAPLG00000005717)	CELF5 (ENSAPLG00000005174)	NCLN (ENSAPLG00000004844)	S1PR4 (ENSAPLG00000001591)	ENSAPLG00000004622	ENSAPLG00000019679	GNA11 (ENSAPLG00000004066)	ENSAPLG00000029543	ENSAPLG00000028560	ENSAPLG00000023429
Phasianidae	ANCESTRAL SPECIES	19	ENSGT00940000158081 #9	ENSGT00940000167763	ENSGT00410000025695.b #10	ENSGT00390000002913 #11	ENSGT00940000158163 #12	ENSGT00390000000672.a.a #13	ENSGT00940000160699 #14	ENSGT00940000165199	ENSGT00390000014856 #15	ENSGT00940000160753 #16	ENSGT00390000017748 #17	ENSGT00940000158649.d #18	ENSGT00940000160926 #19	ENSGT00390000012913.a #20	ENSGT00410000025695.a #21	ENSGT00390000012198 #22	ENSGT00390000004097.a #23	ENSGT00390000000719 #25	ENSGT00390000007227.b #26	ENSGT00390000008152.B.a #27	ENSGT00390000006166	ENSGT00390000016851	ENSGT00940000157019	ENSGT00390000007029	ENSGT00390000012240	ENSGT00390000007336	ENSGT00510000049316	ENSGT00390000016934	ENSGT00530000063974.a	ENSGT00940000160748	ENSGT00940000165052
Japanese quail	MODERN SPECIES	20	ENSCJPG00005011189 #9	ENSCJPG00005011188	SUGP2 (ENSCJPG00005011187) #10	ARMC6 (ENSCJPG00005011186) #11	SLC25A42 (ENSCJPG00005011178) #12	ENSCJPG00005011175	MEF2B (ENSCJPG00005011174) #14	ENSCJPG00005011173	BORCS8 (ENSCJPG00005011172) #15	RFXANK (ENSCJPG00005011171) #16	ENSCJPG00005011170 #17	NCAN (ENSCJPG00005011168) #18	HAPLN4 (ENSCJPG00005011167) #19	TM6SF2 (ENSCJPG00005011166) #20	SUGP1 (ENSCJPG00005011161) #21	MAU2 (ENSCJPG00005011158) #22	GATAD2A (ENSCJPG00005011157) #23	NDUFA13 (ENSCJPG00005011156) #25	YJEFN3 (ENSCJPG00005011155) #26	CILP2 (ENSCJPG00005011154) #27	ENSCJPG00005011152	GTPBP3 (ENSCJPG00005011151)	ANO8 (ENSCJPG00005011150)	DDA1 (ENSCJPG00005011149)	MRPL34 (ENSCJPG00005011147)	ABHD8 (ENSCJPG00005011146)	ANKLE1 (ENSCJPG00005011145)	BABAM1 (ENSCJPG00005011141)	USHBP1 (ENSCJPG00005011140)	NR2F6 (ENSCJPG00005011133)	ENSCJPG00005011131
Phasianidae_b	ANCESTRAL SPECIES	20	ENSGT00940000158081 #9	ENSGT00940000167763	ENSGT00410000025695.b #10	ENSGT00390000002913 #11	ENSGT00940000158163 #12	ENSGT00390000000672.a.a #13	ENSGT00940000160699 #14	ENSGT00940000165199	ENSGT00390000014856 #15	ENSGT00940000160753 #16	ENSGT00390000017748 #17	ENSGT00940000158649.d #18	ENSGT00940000160926 #19	ENSGT00390000012913.a #20	ENSGT00410000025695.a #21	ENSGT00390000012198 #22	ENSGT00390000004097.a #23	ENSGT00390000000719 #25	ENSGT00390000007227.b #26	ENSGT00390000008152.B.a #27	ENSGT00970000194286	ENSGT00390000006166	ENSGT00390000016851	ENSGT00940000157019	ENSGT00390000007029	ENSGT00390000007336	ENSGT00510000049316	ENSGT00390000016934	ENSGT00530000063974.a	ENSGT00940000160748	ENSGT00940000165052
Chicken	MODERN SPECIES	20	ENSGALG00010028152	ENSGALG00010028446 #10	SUGP2 (ENSGALG00010028124) #10	ARMC6 (ENSGALG00010028150) #11	SLC25A42 (ENSGALG00010028147) #12	TMEM161A (ENSGALG00010028131) #13	MEF2B (ENSGALG00010028444) #14	ENSGALG00010028443	BORCS8 (ENSGALG00010028439) #15	RFXANK (ENSGALG00010028432) #16	NR2C2AP (ENSGALG00010028430) #17	NCAN (ENSGALG00010028386) #18	HAPLN4 (ENSGALG00010028379) #19	TM6SF2 (ENSGALG00010028525) #20	SUGP1 (ENSGALG00010028523) #21	MAU2 (ENSGALG00010028518) #22	GATAD2A (ENSGALG00010028516) #23	NDUFA13 (ENSGALG00010028512) #25	YJEFN3 (ENSGALG00010028511) #26	CILP2 (ENSGALG00010028510) #27	ENSGALG00010028610	PLVAP (ENSGALG00010028607)	GTPBP3 (ENSGALG00010028605)	ANO8 (ENSGALG00010028601)	DDA1 (ENSGALG00010028596)	ABHD8 (ENSGALG00010028588)	ANKLE1 (ENSGALG00010028587)	BABAM1 (ENSGALG00010028586)	USHBP1 (ENSGALG00010028583)	NR2F6 (ENSGALG00010028581)	OCLN (ENSGALG00010028579)
Turkey	MODERN SPECIES	23	THOP1 (ENSMGAG00000004287)	ENSMGAG00000004273	ENSMGAG00000004246	ENSMGAG00000022068	ENSMGAG00000004238	ENSMGAG00000004216	APC2 (ENSMGAG00000018235)	RPS15 (ENSMGAG00000004229)	DAZAP1 (ENSMGAG00000020659)	GAMT (ENSMGAG00000022259)	NDUFS7 (ENSMGAG00000004106)	ENSMGAG00000004088	ENSMGAG00000020085	TM6SF2 (ENSMGAG00000003934) #20	SUGP1 (ENSMGAG00000003967) #21	MAU2 (ENSMGAG00000004012) #22	GATAD2A (ENSMGAG00000004036) #23	YJEFN3 (ENSMGAG00000018230) #26	ENSMGAG00000021153	GTPBP3 (ENSMGAG00000020218)	ANO8 (ENSMGAG00000003374)	DDA1 (ENSMGAG00000003919)	ABHD8 (ENSMGAG00000001860)	ANKLE1 (ENSMGAG00000021903)	USHBP1 (ENSMGAG00000019092)	ENSMGAG00000019234	ENSMGAG00000018914	ENSMGAG00000002388	ENSMGAG00000002489	ENSMGAG00000002493	ENSMGAG00000002325
Neognathae_b	ANCESTRAL SPECIES	22	ENSGT00940000158081 #9	ENSGT00940000167763	ENSGT00410000025695.b #10	ENSGT00390000002913 #11	ENSGT00940000158163 #12	ENSGT00390000000672.a.a #13	ENSGT00940000160699 #14	ENSGT00940000165199	ENSGT00390000014856 #15	ENSGT00940000160753 #16	ENSGT00390000017748 #17	ENSGT00940000158649 #18	ENSGT00940000160926 #19	ENSGT00390000012913.a #20	ENSGT00410000025695.a.h #21	ENSGT00390000012198 #22	ENSGT01060000249150	ENSGT00390000004097.a #23	ENSGT00390000000719 #25	ENSGT00390000007227.b #26	ENSGT00390000008152.B.a #27	ENSGT00390000006166	ENSGT00390000016851	ENSGT00940000157019	ENSGT00390000007029	ENSGT00390000012240	ENSGT00390000007336	ENSGT00510000049316	ENSGT00390000016934	ENSGT00530000063974.a	ENSGT00940000160748
Passeriformes	ANCESTRAL SPECIES	34	ENSGT00730000111231 #8	ENSGT00940000158081 #9	ENSGT00410000025695.b #10	ENSGT00390000002913 #11	ENSGT00940000158163 #12	ENSGT00390000000672.a.a #13	ENSGT00940000160699 #14	ENSGT00940000165199	ENSGT00390000014856 #15	ENSGT00940000160753 #16	ENSGT00390000017748 #17	ENSGT00940000158649 #18	ENSGT00940000160926 #19	ENSGT00390000012913.a #20	ENSGT00410000025695.a.h #21	ENSGT00390000012198 #22	ENSGT01060000249150	ENSGT00390000004097.a #23	ENSGT00390000000719 #25	ENSGT00390000008152.B.a #27	ENSGT00970000194286	ENSGT00390000016851	ENSGT00940000157019	ENSGT00390000007029	ENSGT00390000012240	ENSGT00390000007336
Great tit	MODERN SPECIES	282						ENSPMJG00000001384 #13	MEF2B (ENSPMJG00000001372) #14	ENSPMJG00000001365	BORCS8 (ENSPMJG00000001351) #15	ENSPMJG00000001342 #16	ENSPMJG00000001294 #17	NCAN (ENSPMJG00000001279) #18	HAPLN4 (ENSPMJG00000001224) #19	TM6SF2 (ENSPMJG00000001219) #20	ENSPMJG00000001215 #21	MAU2 (ENSPMJG00000001205) #22
Passeriformes_d	ANCESTRAL SPECIES	35	ENSGT00730000111231 #8	ENSGT00940000158081 #9	ENSGT00410000025695.b #10	ENSGT00390000002913 #11	ENSGT00940000158163 #12	ENSGT00390000000672.a.a #13	ENSGT00940000160699 #14	ENSGT00940000165199	ENSGT00390000014856 #15	ENSGT00940000160753 #16	ENSGT00390000017748 #17	ENSGT00940000158649 #18	ENSGT00940000160926 #19	ENSGT00390000012913.a #20	ENSGT00410000025695.a.h #21	ENSGT00390000012198 #22	ENSGT01060000249150	ENSGT00390000004097.a #23	ENSGT00390000000719 #25	ENSGT00390000008152.B.a #27	ENSGT00970000194286	ENSGT00390000016851	ENSGT00940000157019.c	ENSGT00390000007029	ENSGT00390000012240	ENSGT00390000007336
Passeriformes_g	ANCESTRAL SPECIES	39	ENSGT00390000003478 #7	ENSGT00730000111231 #8	ENSGT00940000158081 #9	ENSGT00410000025695.b #10	ENSGT00390000002913 #11	ENSGT00940000158163 #12	ENSGT00390000000672.a.a #13	ENSGT00940000160699 #14	ENSGT00390000014856 #15	ENSGT00940000160753 #16	ENSGT00390000017748 #17	ENSGT00940000158649 #18	ENSGT00940000160926 #19	ENSGT00390000012913.a #20	ENSGT00410000025695.a.h #21	ENSGT00390000012198 #22	ENSGT01060000249150	ENSGT00390000004097.a #23	ENSGT00390000000719 #25	ENSGT00390000008152.B.a #27	ENSGT00970000194286	ENSGT00390000016851	ENSGT00940000157019.c	ENSGT00390000007029	ENSGT00390000012240	ENSGT00390000007336
Medium ground finch	MODERN SPECIES	522												HAPLN4 (ENSGFOG00000009448) #19	ENSGFOG00000009453 #20	SUGP1 (ENSGFOG00000009468) #21	ENSGFOG00000009783	MAU2 (ENSGFOG00000009789) #22
Passeroidea	ANCESTRAL SPECIES	38	ENSGT00390000003478 #7	ENSGT00730000111231 #8	ENSGT00940000158081 #9	ENSGT00410000025695.b #10	ENSGT00390000002913 #11	ENSGT00940000158163 #12	ENSGT00390000000672.a.a #13	ENSGT00940000160699 #14	ENSGT00390000014856 #15	ENSGT00940000160753 #16	ENSGT00390000017748 #17	ENSGT00940000158649 #18	ENSGT00940000160926 #19	ENSGT00390000012913.a #20	ENSGT00410000025695.a.h #21	ENSGT00390000012198 #22	ENSGT01060000249150	ENSGT00390000004097.a #23	ENSGT00390000000719 #25	ENSGT00390000008152.B.a #27	ENSGT00970000194286	ENSGT00390000016851	ENSGT00940000157019.c	ENSGT00390000007029	ENSGT00390000012240	ENSGT00390000007336
Zebra finch	MODERN SPECIES	21	ENSTGUG00000023122	MEF2B (ENSTGUG00000022364) #14	ENSTGUG00000024488 #15	RFXANK (ENSTGUG00000014033) #16	ENSTGUG00000020853 #17	NCAN (ENSTGUG00000019059) #18	HAPLN4 (ENSTGUG00000019161) #19	TM6SF2 (ENSTGUG00000013966) #20	SUGP1 (ENSTGUG00000013941) #21	CILP2 (ENSTGUG00000019631) #27	ENSTGUG00000026134	ENSTGUG00000020486	ENSTGUG00000021489	ENSTGUG00000015926	ENSTGUG00000024768	MAU2 (ENSTGUG00000013909) #22	GATAD2A (ENSTGUG00000013885) #23	NDUFA13 (ENSTGUG00000027276) #25	ENSTGUG00000029553 #26	ENSTGUG00000024009 #26	ENSTGUG00000023781	ENSTGUG00000019139	ENSTGUG00000021258	ANO8 (ENSTGUG00000021968)	ENSTGUG00000024084	ABHD8 (ENSTGUG00000020176)	BABAM1 (ENSTGUG00000020651)	ENSTGUG00000022058	NR2F6 (ENSTGUG00000017126)	ENSTGUG00000028980	KCNN1 (ENSTGUG00000014658)
Common canary	MODERN SPECIES	173														ENSSCAG00000002697 #21	ENSSCAG00000002704 #21	MAU2 (ENSSCAG00000002706) #22	ENSSCAG00000002712	ENSSCAG00000002718 #23
Flycatcher	MODERN SPECIES	444															ENSFALG00000024908 #21	ENSFALG00000010868 #22
Neognathae_c	ANCESTRAL SPECIES	24	ENSGT00940000158081 #9	ENSGT00940000167763	ENSGT00410000025695.b #10	ENSGT00390000002913 #11	ENSGT00940000158163 #12	ENSGT00390000000672.a.a #13	ENSGT00940000160699 #14	ENSGT00940000165199	ENSGT00390000014856 #15	ENSGT00940000160753 #16	ENSGT00390000017748 #17	ENSGT00940000158649 #18	ENSGT00940000160926 #19	ENSGT00390000012913.a #20	ENSGT00410000025695.a.h #21	ENSGT00390000012198 #22	ENSGT00390000004097.a #23	ENSGT00390000000719 #25	ENSGT00390000007227.b #26	ENSGT00390000008152.B.a #27	ENSGT00390000006166	ENSGT00390000016851	ENSGT00940000157019	ENSGT00390000007029	ENSGT00390000012240	ENSGT00390000007336	ENSGT00510000049316	ENSGT00390000016934	ENSGT00530000063974.a	ENSGT00940000160748	ENSGT00940000165052
Kakapo	MODERN SPECIES	13	HOMER3 (ENSSHBG00005016668) #9	ENSSHBG00005016648	SUGP2 (ENSSHBG00005016643) #10	ARMC6 (ENSSHBG00005016636) #11	SLC25A42 (ENSSHBG00005016405) #12	TMEM161A (ENSSHBG00005016377) #13	MEF2B (ENSSHBG00005016361) #14	ENSSHBG00005016346	BORCS8 (ENSSHBG00005016340) #15	RFXANK (ENSSHBG00005016324) #16	NR2C2AP (ENSSHBG00005016311) #17	NCAN (ENSSHBG00005016099) #18	HAPLN4 (ENSSHBG00005016090) #19	TM6SF2 (ENSSHBG00005016084) #20	SUGP1 (ENSSHBG00005016077) #21	MAU2 (ENSSHBG00005016045) #22	GATAD2A (ENSSHBG00005016010) #23	NDUFA13 (ENSSHBG00005016006) #25	YJEFN3 (ENSSHBG00005016001) #26	CILP2 (ENSSHBG00005015990) #27	ENSSHBG00005015986	GTPBP3 (ENSSHBG00005015979)	ANO8 (ENSSHBG00005015977)	MRPL34 (ENSSHBG00005015967)	ABHD8 (ENSSHBG00005015962)	ANKLE1 (ENSSHBG00005015957)	BABAM1 (ENSSHBG00005015951)	ENSSHBG00005015946	NR2F6 (ENSSHBG00005015943)	ENSSHBG00005015936	ENSSHBG00005015922
Golden eagle	MODERN SPECIES	3	HOMER3 (ENSACCG00020005833) #9	SUGP2 (ENSACCG00020005795) #10	ARMC6 (ENSACCG00020005768) #11	SLC25A42 (ENSACCG00020005755) #12	TMEM161A (ENSACCG00020005730) #13	MEF2B (ENSACCG00020005665) #14	ENSACCG00020005651	BORCS8 (ENSACCG00020005634) #15	RFXANK (ENSACCG00020005611) #16	NR2C2AP (ENSACCG00020005548) #17	ENSACCG00020005528	NCAN (ENSACCG00020005458) #18	HAPLN4 (ENSACCG00020005415) #19	TM6SF2 (ENSACCG00020005379) #20	SUGP1 (ENSACCG00020005346) #21	MAU2 (ENSACCG00020005272) #22	GATAD2A (ENSACCG00020005214) #23	NDUFA13 (ENSACCG00020005202) #25	YJEFN3 (ENSACCG00020005188) #26	CILP2 (ENSACCG00020005178) #27	ENSACCG00020005158	GTPBP3 (ENSACCG00020005142)	ANO8 (ENSACCG00020005101)	DDA1 (ENSACCG00020005063)	MRPL34 (ENSACCG00020005054)	ABHD8 (ENSACCG00020005049)	ANKLE1 (ENSACCG00020005042)	BABAM1 (ENSACCG00020005036)	USHBP1 (ENSACCG00020005028)	NR2F6 (ENSACCG00020005019)	ENSACCG00020005009