Fungi/Metazoa group	ANCESTRAL SPECIES																	ENSGT00390000001718 #22
Bilateria	ANCESTRAL SPECIES																	ENSGT00390000001718 #22
Chordata	ANCESTRAL SPECIES																	ENSGT00390000001718 #22
Vertebrata	ANCESTRAL SPECIES																	ENSGT00390000001718 #22
Gnathostomata	ANCESTRAL SPECIES	91			ENSGT00390000001856	ENSGT00940000155248	ENSGT00390000012731.a.b	ENSGT00390000017916	ENSGT00940000156832	ENSGT00940000157879	ENSGT00940000155515.a.b.b #15	ENSGT00930000150980.a #16	ENSGT00390000009987 #17	ENSGT00390000010523.c.b #18	ENSGT00940000158904 #19	ENSGT01080000257365.b.a.a.b.a #20	ENSGT00950000183038.a.b.b.b #21	ENSGT00390000001718 #22	ENSGT00940000159241 #23	ENSGT00530000063734.a #25	ENSGT00940000160160 #27	ENSGT00940000161094 #28	ENSGT00940000153988.A #29	ENSGT00940000155773.b #31	ENSGT00940000154574.d #32
Euteleostomi	ANCESTRAL SPECIES	3	ENSGT00390000012731.a.b	ENSGT00390000017916	ENSGT00940000159891	ENSGT00390000002689	ENSGT00940000161168	ENSGT00940000156832	ENSGT00940000163949	ENSGT00940000157879	ENSGT00940000155515.a.b.b #15	ENSGT00930000150980.a #16	ENSGT00390000009987 #17	ENSGT00390000010523.c.b #18	ENSGT00940000158904 #19	ENSGT01080000257365.b.a.a.b.a #20	ENSGT00950000183038.a.b.b.b #21	ENSGT00390000001718 #22	ENSGT00940000159241 #23	ENSGT00940000170556	ENSGT00530000063734.a #25	ENSGT00940000158842 #26	ENSGT00940000160160 #27	ENSGT00940000161094 #28	ENSGT00940000153988.A #29	ENSGT00940000155773.b #31	ENSGT00940000154574.d #32	ENSGT00940000155655.B #33	ENSGT00940000155655.A ##33	ENSGT00940000157230 #34	ENSGT00940000155359 #35	ENSGT00530000063836.a #36	ENSGT01050000244842.a.b.a #37
Sarcopterygii	ANCESTRAL SPECIES	14	ENSGT00530000063686.a.a ##7	ENSGT00940000157201 #9	ENSGT00390000012204 #10	ENSGT00940000154533.b.c.a ##11	ENSGT00940000154533.b.d #11	ENSGT00940000154714 #12	ENSGT00950000182837.b.b #13	ENSGT00940000157055 #14	ENSGT00940000155515.a.b.b #15	ENSGT00930000150980.a #16	ENSGT00390000009987 #17	ENSGT00390000010523.c.b #18	ENSGT00940000158904 #19	ENSGT01080000257365.b.a.a.b.a #20	ENSGT00950000183038.a.b.b.b #21	ENSGT00390000001718 #22	ENSGT00940000159241 #23	ENSGT00940000170556	ENSGT00530000063734.a #25	ENSGT00940000158842 #26	ENSGT00940000160160 #27	ENSGT00940000161094 #28	ENSGT00940000168997	ENSGT00940000153988.A #29	ENSGT00940000155773.b #31	ENSGT00940000154574.d #32	ENSGT00940000155655.B #33	ENSGT00940000157230 #34	ENSGT00940000155359 #35	ENSGT00530000063836.a #36	ENSGT01050000244842.a.b.a #37
Tetrapoda	ANCESTRAL SPECIES	6	ENSGT00530000063686.a.b #7	ENSGT00530000063686.a.a ##7	ENSGT00940000157201 #9	ENSGT00390000012204 #10	ENSGT00940000154533.b.d #11	ENSGT00940000154714 #12	ENSGT00950000182837.b.b #13	ENSGT00940000157055 #14	ENSGT00940000155515.a.b.b #15	ENSGT00930000150980.a #16	ENSGT00390000009987 #17	ENSGT00390000010523.c.b #18	ENSGT00940000158904 #19	ENSGT01080000257365.b.a.a.b.a #20	ENSGT00950000183038.a.b.b.b #21	ENSGT00390000001718 #22	ENSGT00940000159241 #23	ENSGT00940000170556	ENSGT00530000063734.a #25	ENSGT00940000158842 #26	ENSGT00940000160160 #27	ENSGT00940000161094 #28	ENSGT00940000153988.A #29	ENSGT00940000155773.b #31	ENSGT00940000154574.d #32	ENSGT00940000155655.B #33	ENSGT00940000157230 #34	ENSGT00940000155359 #35	ENSGT00940000179573	ENSGT00530000063836.a #36	ENSGT01050000244842.a.b.a #37
Amniota	ANCESTRAL SPECIES	6	ENSGT00530000063686.a.b #7	ENSGT00530000063686.a.a ##7	ENSGT00940000157201 #9	ENSGT00390000012204 #10	ENSGT00940000154533.b.d #11	ENSGT00940000154714 #12	ENSGT00950000182837.b.b #13	ENSGT00940000157055 #14	ENSGT00940000155515.a.b.b #15	ENSGT00930000150980.a #16	ENSGT00390000009987 #17	ENSGT00390000010523.c.b #18	ENSGT00940000158904 #19	ENSGT01080000257365.b.a.a.b.a #20	ENSGT00950000183038.a.b.b.b #21	ENSGT00390000001718 #22	ENSGT00940000159241 #23	ENSGT01090000260082.d.a.a.a.b #24	ENSGT00530000063734.a #25	ENSGT00940000158842 #26	ENSGT00940000160160 #27	ENSGT00940000161094 #28	ENSGT00940000153988.A #29	ENSGT00940000155773.b #31	ENSGT00940000154574.d #32	ENSGT00940000155655.B #33	ENSGT00940000157230 #34	ENSGT00940000155359 #35	ENSGT00940000179573	ENSGT00530000063836.a #36	ENSGT01050000244842.a.b.a #37
Mammalia	ANCESTRAL SPECIES	6	ENSGT00530000063686.a.b #7	ENSGT00530000063686.a.a ##7	ENSGT00940000157201 #9	ENSGT00390000012204 #10	ENSGT00940000154533.b.d #11	ENSGT00940000154714 #12	ENSGT00950000182837.b.b #13	ENSGT00940000157055 #14	ENSGT00940000155515.a.b.b #15	ENSGT00930000150980.a #16	ENSGT00390000009987 #17	ENSGT00390000010523.c.b #18	ENSGT00940000158904 #19	ENSGT01080000257365.b.a.a.b.a #20	ENSGT00950000183038.a.b.b.b #21	ENSGT00390000001718 #22	ENSGT00940000159241 #23	ENSGT01090000260082.d.a.a.a.b #24	ENSGT00530000063734.a #25	ENSGT00940000158842 #26	ENSGT00940000160160 #27	ENSGT00940000161094 #28	ENSGT00940000153988.A #29	ENSGT00940000155773.b #31	ENSGT00940000154574.d #32	ENSGT00940000155655.B #33	ENSGT00940000157230 #34	ENSGT00940000155359 #35	ENSGT00530000063836.a #36	ENSGT01050000244842.a.b.a #37	ENSGT01050000244842.a.b.b.a.a.a ##37
Theria	ANCESTRAL SPECIES	5	ENSGT00530000063686.a.b #7	ENSGT00530000063686.a.a ##7	ENSGT00940000157201 #9	ENSGT00390000012204 #10	ENSGT00940000154533.b.d #11	ENSGT00940000154714 #12	ENSGT00950000182837.b.b #13	ENSGT00940000157055 #14	ENSGT00940000155515.a.b.b #15	ENSGT00930000150980.a #16	ENSGT00390000009987 #17	ENSGT00390000010523.c.b #18	ENSGT00940000158904 #19	ENSGT01080000257365.b.a.a.b.a #20	ENSGT00950000183038.a.b.b.b #21	ENSGT00390000001718 #22	ENSGT00940000159241 #23	ENSGT01090000260082.d.a.a.a.b #24	ENSGT00530000063734.a #25	ENSGT00940000158842 #26	ENSGT00940000160160 #27	ENSGT00940000161094 #28	ENSGT00940000153988.A #29	ENSGT00940000155773.b #31	ENSGT00940000154574.d #32	ENSGT00940000155655.B #33	ENSGT00940000157230 #34	ENSGT00940000155359 #35	ENSGT00530000063836.a #36	ENSGT01050000244842.a.b.a #37	ENSGT01050000244842.a.b.b.a.a.a ##37
Eutheria	ANCESTRAL SPECIES	10	ENSGT00530000063686.a.b #7	ENSGT00530000063686.a.a ##7	ENSGT00940000157201 #9	ENSGT00390000012204 #10	ENSGT00940000154533.b.d #11	ENSGT00940000154714 #12	ENSGT00950000182837.b.b #13	ENSGT00940000157055 #14	ENSGT00940000155515.a.b.b #15	ENSGT00930000150980.a #16	ENSGT00390000009987 #17	ENSGT00390000010523.c.b #18	ENSGT00940000158904 #19	ENSGT01080000257365.b.a.a.b.a #20	ENSGT00950000183038.a.b.b.b #21	ENSGT00390000001718 #22	ENSGT00940000159241 #23	ENSGT01090000260082.d.a.a.a.b #24	ENSGT00530000063734.a #25	ENSGT00940000158842 #26	ENSGT00940000160160 #27	ENSGT00940000161094 #28	ENSGT00940000153988.A #29	ENSGT00940000155773.b #31	ENSGT00940000154574.d #32	ENSGT00940000155655.B #33	ENSGT00940000157230 #34	ENSGT00940000155359 #35	ENSGT00530000063836.a #36	ENSGT01050000244842.a.b.a #37	ENSGT01050000244842.a.b.b.a.a.a ##37
Boreoeutheria	ANCESTRAL SPECIES	14	ENSGT00530000063686.a.a ##7	ENSGT00940000157201 #9	ENSGT00390000012204 #10	ENSGT00940000154533.b.d #11	ENSGT00940000154714 #12	ENSGT00950000182837.b.b #13	ENSGT00940000157055 #14	ENSGT00940000155515.a.b.b #15	ENSGT00930000150980.a #16	ENSGT00950000185140	ENSGT00390000009987 #17	ENSGT00390000010523.c.b #18	ENSGT00940000158904 #19	ENSGT01080000257365.b.a.a.b.a #20	ENSGT00950000183038.a.b.b.b #21	ENSGT00390000001718 #22	ENSGT00940000159241 #23	ENSGT01090000260082.d.a.a.a.b #24	ENSGT00530000063734.a #25	ENSGT00940000158842 #26	ENSGT00940000160160 #27	ENSGT00940000161094 #28	ENSGT00940000153988.A #29	ENSGT00940000155773.b #31	ENSGT00940000154574.d #32	ENSGT00940000155655.B #33	ENSGT00940000157230 #34	ENSGT00940000155359 #35	ENSGT00530000063836.a #36	ENSGT01050000244842.a.b.a #37	ENSGT01050000244842.a.b.b.a.a.a ##37
Euarchontoglires	ANCESTRAL SPECIES	14	ENSGT00530000063686.a.a ##7	ENSGT00940000157201 #9	ENSGT00390000012204 #10	ENSGT00940000154533.b.d #11	ENSGT00940000154714 #12	ENSGT00950000182837.b.b #13	ENSGT00940000157055 #14	ENSGT00940000155515.a.b.b #15	ENSGT00930000150980.a #16	ENSGT00950000185140	ENSGT00390000009987 #17	ENSGT00390000010523.c.b #18	ENSGT00940000158904 #19	ENSGT01080000257365.b.a.a.b.a #20	ENSGT00950000183038.a.b.b.b #21	ENSGT00390000001718 #22	ENSGT00940000159241 #23	ENSGT01090000260082.d.a.a.a.b #24	ENSGT00530000063734.a #25	ENSGT00940000158842 #26	ENSGT00940000160160 #27	ENSGT00940000161094 #28	ENSGT00940000153988.A #29	ENSGT00940000155773.b #31	ENSGT00940000154574.d #32	ENSGT00940000155655.B #33	ENSGT00940000157230 #34	ENSGT00940000155359 #35	ENSGT00530000063836.a #36	ENSGT01050000244842.a.b.a #37	ENSGT01050000244842.a.b.b.a.a.a ##37
Euarchontoglires_A	ANCESTRAL SPECIES	13	ENSGT00530000063686.a.a ##7	ENSGT00940000157201 #9	ENSGT00390000012204 #10	ENSGT00940000154533.b.d #11	ENSGT00940000154714 #12	ENSGT00950000182837.b.b #13	ENSGT00940000157055 #14	ENSGT00940000155515.a.b.b #15	ENSGT00930000150980.a #16	ENSGT00950000185140	ENSGT00390000009987 #17	ENSGT00390000010523.c.b #18	ENSGT00940000158904 #19	ENSGT01080000257365.b.a.a.b.a #20	ENSGT00950000183038.a.b.b.b #21	ENSGT00390000001718 #22	ENSGT00940000159241 #23	ENSGT01090000260082.d.a.a.a.b #24	ENSGT00530000063734.a #25	ENSGT00940000158842 #26	ENSGT00940000160160 #27	ENSGT00940000161094 #28	ENSGT00940000153988.A #29	ENSGT00940000155773.b #31	ENSGT00940000154574.d #32	ENSGT00940000155655.B #33	ENSGT00940000157230 #34	ENSGT00940000155359 #35	ENSGT00530000063836.a #36	ENSGT01050000244842.a.b.a #37	ENSGT01050000244842.a.b.b.a.a.a ##37
Glires	ANCESTRAL SPECIES	14	ENSGT00530000063686.a.a ##7	ENSGT00940000157201 #9	ENSGT00390000012204 #10	ENSGT00940000154533.b.d #11	ENSGT00940000154714 #12	ENSGT00950000182837.b.b #13	ENSGT00940000157055 #14	ENSGT00940000155515.a.b.b #15	ENSGT00930000150980.a #16	ENSGT00950000185140	ENSGT00390000009987 #17	ENSGT00390000010523.c.b #18	ENSGT00940000158904 #19	ENSGT01080000257365.b.a.a.b.a #20	ENSGT00950000183038.a.b.b.b #21	ENSGT00390000001718 #22	ENSGT00940000159241 #23	ENSGT01090000260082.d.a.a.a.b #24	ENSGT00530000063734.a #25	ENSGT00940000158842 #26	ENSGT00940000160160 #27	ENSGT00940000161094 #28	ENSGT00940000153988.A #29	ENSGT00940000155773.b #31	ENSGT00940000154574.d #32	ENSGT00940000155655.B #33	ENSGT00940000157230 #34	ENSGT00940000155359 #35	ENSGT00530000063836.a #36	ENSGT01050000244842.a.b.a #37	ENSGT01050000244842.a.b.b.a.a.a ##37
Rodentia	ANCESTRAL SPECIES	14	ENSGT00530000063686.a.b #7	ENSGT00530000063686.a.a ##7	ENSGT00940000157201 #9	ENSGT00390000012204 #10	ENSGT00940000154533.b.d #11	ENSGT00940000154714 #12	ENSGT00950000182837.b.b #13	ENSGT00940000157055 #14	ENSGT00940000155515.a.b.b #15	ENSGT00930000150980.a #16	ENSGT00390000009987 #17	ENSGT00390000010523.c.b #18	ENSGT00940000158904 #19	ENSGT01080000257365.b.a.a.b.a #20	ENSGT00950000183038.a.b.b.b #21	ENSGT00390000001718 #22	ENSGT00940000159241 #23	ENSGT01090000260082.d.a.a.a.b #24	ENSGT00530000063734.a #25	ENSGT00940000158842 #26	ENSGT00940000160160 #27	ENSGT00940000161094 #28	ENSGT00940000153988.A #29	ENSGT00940000155773.b #31	ENSGT00940000154574.d #32	ENSGT00940000155655.B #33	ENSGT00940000157230 #34	ENSGT00940000155359 #35	ENSGT00530000063836.a #36	ENSGT01050000244842.a.b.a #37	ENSGT01050000244842.a.b.b.a.a.a ##37
Rodentia_B	ANCESTRAL SPECIES	12	ENSGT00530000063686.a.b #7	ENSGT00530000063686.a.a ##7	ENSGT00940000157201 #9	ENSGT00390000012204 #10	ENSGT00940000154533.b.d #11	ENSGT00940000154714 #12	ENSGT00950000182837.b.b #13	ENSGT00940000157055 #14	ENSGT00940000155515.a.b.b #15	ENSGT00930000150980.a #16	ENSGT00390000009987 #17	ENSGT00390000010523.c.b #18	ENSGT00940000158904 #19	ENSGT01080000257365.b.a.a.b.a #20	ENSGT00950000183038.a.b.b.b #21	ENSGT00390000001718 #22	ENSGT00940000159241 #23	ENSGT01090000260082.d.a.a.a.b #24	ENSGT00530000063734.a #25	ENSGT00940000158842 #26	ENSGT00940000160160 #27	ENSGT00940000161094 #28	ENSGT00940000153988.A #29	ENSGT00940000155773.b #31	ENSGT00940000154574.d #32	ENSGT00940000155655.B #33	ENSGT00940000157230 #34	ENSGT00940000155359 #35	ENSGT00530000063836.a #36	ENSGT01050000244842.a.b.a #37	ENSGT01050000244842.a.b.b.a.a.a ##37
Myomorpha	ANCESTRAL SPECIES	10	ENSGT00530000063686.a.b #7	ENSGT00530000063686.a.a ##7	ENSGT00940000157201 #9	ENSGT00390000012204 #10	ENSGT00940000154533.b.d #11	ENSGT00940000154714 #12	ENSGT00950000182837.b.b #13	ENSGT00940000157055 #14	ENSGT00940000155515.a.b.b #15	ENSGT00930000150980.a #16	ENSGT00390000009987 #17	ENSGT00390000010523.c.b #18	ENSGT00940000158904 #19	ENSGT01080000257365.b.a.a.b.a #20	ENSGT00950000183038.a.b.b.b #21	ENSGT00390000001718 #22	ENSGT00940000159241 #23	ENSGT01090000260082.d.a.a.a.b #24	ENSGT00530000063734.a #25	ENSGT00940000158842 #26	ENSGT00940000160160 #27	ENSGT00940000161094 #28	ENSGT00940000153988.A #29	ENSGT00940000155773.b #31	ENSGT00940000154574.d #32	ENSGT00940000155655.B #33	ENSGT00940000157230 #34	ENSGT00940000155359 #35	ENSGT00530000063836.a #36	ENSGT01050000244842.a.b.a #37	ENSGT01050000244842.a.b.b.a.a.a ##37
Muroidea	ANCESTRAL SPECIES	34	ENSGT00530000063686.a.b #7	ENSGT00530000063686.a.a ##7	ENSGT00940000157201 #9	ENSGT00390000012204 #10	ENSGT00940000154533.b.d #11	ENSGT00940000154714 #12	ENSGT00950000182837.b.b #13	ENSGT00940000157055 #14	ENSGT00940000155515.a.b.b #15	ENSGT00930000150980.a #16	ENSGT00390000009987 #17	ENSGT00390000010523.c.b #18	ENSGT00940000158904 #19	ENSGT01080000257365.b.a.a.b.a #20	ENSGT00950000183038.a.b.b.b #21	ENSGT00390000001718 #22	ENSGT00940000159241 #23	ENSGT01090000260082.d.a.a.a.b #24	ENSGT00530000063734.a #25	ENSGT00940000158842 #26	ENSGT00940000160160 #27	ENSGT00940000161094 #28	ENSGT00940000153988.A #29	ENSGT00940000155773.b #31	ENSGT00940000154574.d #32	ENSGT00940000155655.B #33	ENSGT00940000157230 #34	ENSGT00940000155359 #35	ENSGT00530000063836.a #36	ENSGT01050000244842.a.b.a #37	ENSGT01050000244842.a.b.b.a.a.a ##37
Muroidea_A	ANCESTRAL SPECIES	2	ENSGT00530000063686.a.b #7	ENSGT00530000063686.a.a ##7	ENSGT00940000157201 #9	ENSGT00390000012204 #10	ENSGT00940000154533.b.d #11	ENSGT00940000154714 #12	ENSGT00950000182837.b.b #13	ENSGT00940000157055 #14	ENSGT00940000155515.a.b.b #15	ENSGT00930000150980.a #16	ENSGT00390000009987 #17	ENSGT00390000010523.c.b #18	ENSGT00940000158904 #19	ENSGT01080000257365.b.a.a.b.a #20	ENSGT00950000183038.a.b.b.b #21	ENSGT00390000001718 #22	ENSGT00940000159241 #23	ENSGT01090000260082.d.a.a.a.b #24	ENSGT00530000063734.a #25	ENSGT00940000158842 #26	ENSGT00940000160160 #27	ENSGT00940000161094 #28	ENSGT00940000153988.A #29	ENSGT00940000155773.b #31	ENSGT00940000154574.d #32	ENSGT00940000155655.B #33	ENSGT00940000157230 #34	ENSGT00940000155359 #35	ENSGT00530000063836.a #36	ENSGT01050000244842.a.b.a #37	ENSGT01050000244842.a.b.b.a.a.a ##37
Cricetidae	ANCESTRAL SPECIES	12	ENSGT00530000063686.a.b #7	ENSGT00530000063686.a.a ##7	ENSGT00940000157201 #9	ENSGT00390000012204 #10	ENSGT00940000154533.b.d #11	ENSGT00940000154714 #12	ENSGT00950000182837.b.b #13	ENSGT00940000157055 #14	ENSGT00940000155515.a.b.b #15	ENSGT00930000150980.a #16	ENSGT00390000009987 #17	ENSGT00390000010523.c.b #18	ENSGT00940000158904 #19	ENSGT01080000257365.b.a.a.b.a #20	ENSGT00950000183038.a.b.b.b #21	ENSGT00390000001718 #22	ENSGT00940000159241 #23	ENSGT01090000260082.d.a.a.a.b #24	ENSGT00530000063734.a #25	ENSGT00940000158842 #26	ENSGT00940000160160 #27	ENSGT00940000161094 #28	ENSGT00940000153988.A #29	ENSGT00940000155773.b #31	ENSGT00940000154574.d #32	ENSGT00940000155655.B #33	ENSGT00940000157230 #34	ENSGT00940000155359 #35	ENSGT00530000063836.a #36	ENSGT01050000244842.a.b.a #37	ENSGT01050000244842.a.b.b.a.a.a ##37
Cricetidae_B	ANCESTRAL SPECIES	7	ENSGT00530000063686.a.b #7	ENSGT00530000063686.a.a ##7	ENSGT00940000157201 #9	ENSGT00390000012204 #10	ENSGT00940000154533.b.d #11	ENSGT00940000154714 #12	ENSGT00950000182837.b.b #13	ENSGT00940000157055 #14	ENSGT00940000155515.a.b.b #15	ENSGT00930000150980.a #16	ENSGT00390000009987 #17	ENSGT00390000010523.c.b #18	ENSGT00940000158904 #19	ENSGT01080000257365.b.a.a.b.a #20	ENSGT00950000183038.a.b.b.b #21	ENSGT00390000001718 #22	ENSGT00940000159241 #23	ENSGT01090000260082.d.a.a.a.b #24	ENSGT00530000063734.a #25	ENSGT00940000158842 #26	ENSGT00940000160160 #27	ENSGT00940000161094 #28	ENSGT00940000153988.A #29	ENSGT00940000155773.b #31	ENSGT00940000154574.d #32	ENSGT00940000155655.B #33	ENSGT00940000157230 #34	ENSGT00940000155359 #35	ENSGT00530000063836.a #36	ENSGT01050000244842.a.b.a #37	ENSGT01050000244842.a.b.b.a.a.a ##37
Prairie vole	MODERN SPECIES	12	Rbm43 (ENSMOCG00000007686) #7	ENSMOCG00000011562 #8	Tnfaip6 (ENSMOCG00000003915) #9	Rif1 (ENSMOCG00000009381) #10	Neb (ENSMOCG00000022729) #11	Arl5a (ENSMOCG00000019795) #12	Cacnb4 (ENSMOCG00000022468) #13	Stam2 (ENSMOCG00000003177) #14	Fmnl2 (ENSMOCG00000022812) #15	Prpf40a (ENSMOCG00000009517) #16	Arl6ip6 (ENSMOCG00000016947) #17	Rprm (ENSMOCG00000002172) #18	Galnt13 (ENSMOCG00000014596) #19	Kcnj3 (ENSMOCG00000020988) #20	Nr4a2 (ENSMOCG00000004312) #21	Gpd2 (ENSMOCG00000022538) #22	Galnt5 (ENSMOCG00000018686) #23	Ermn (ENSMOCG00000022625) #24	Cytip (ENSMOCG00000016003) #25	Acvr1c (ENSMOCG00000021159) #26	Acvr1 (ENSMOCG00000014737) #27	Upp2 (ENSMOCG00000013921) #28	Ccdc148 (ENSMOCG00000003566) #29	ENSMOCG00000005550 #30	Pkp4 (ENSMOCG00000015021) #31	Dapl1 (ENSMOCG00000022472) #32	Tanc1 (ENSMOCG00000008681) #33	Wdsub1 (ENSMOCG00000021664) #34	Baz2b (ENSMOCG00000004160) #35	Marchf7 (ENSMOCG00000005095) #36	Cd302 (ENSMOCG00000020178) #37
Northern American deer mouse	MODERN SPECIES	17	Neb (ENSPEMG00000011241) #11	ENSPEMG00000010335 #12	Cacnb4 (ENSPEMG00000000044) #13	Stam2 (ENSPEMG00000012476) #14	Fmnl2 (ENSPEMG00000021308) #15	Prpf40a (ENSPEMG00000020838) #16	Arl6ip6 (ENSPEMG00000001460) #17	Rprm (ENSPEMG00000014265) #18	ENSPEMG00000013797	Galnt13 (ENSPEMG00000015185) #19	ENSPEMG00000012843	Kcnj3 (ENSPEMG00000015278) #20	ENSPEMG00000027901	Nr4a2 (ENSPEMG00000000011) #21	ENSPEMG00000027857	Gpd2 (ENSPEMG00000020267) #22	Galnt5 (ENSPEMG00000020201) #23	Ermn (ENSPEMG00000026555) #24	Cytip (ENSPEMG00000010824) #25	Acvr1c (ENSPEMG00000008762) #26	Acvr1 (ENSPEMG00000008567) #27	ENSPEMG00000029209	Upp2 (ENSPEMG00000004188) #28	Ccdc148 (ENSPEMG00000016298) #29	Pkp4 (ENSPEMG00000015348) #31	Dapl1 (ENSPEMG00000016737) #32	ENSPEMG00000008774	ENSPEMG00000024402	Tanc1 (ENSPEMG00000006898) #33	Wdsub1 (ENSPEMG00000013163) #34	Baz2b (ENSPEMG00000011049) #35
Cricetinae	ANCESTRAL SPECIES	1	ENSGT00530000063686.a.b #7	ENSGT00530000063686.a.a ##7	ENSGT00940000157201 #9	ENSGT00390000012204 #10	ENSGT00940000154533.b.d #11	ENSGT00940000154714 #12	ENSGT00950000182837.b.b #13	ENSGT00940000157055 #14	ENSGT00940000155515.a.b.b #15	ENSGT00930000150980.a #16	ENSGT00390000009987 #17	ENSGT00390000010523.c.b #18	ENSGT00940000158904 #19	ENSGT01080000257365.b.a.a.b.a #20	ENSGT00950000183038.a.b.b.b #21	ENSGT00390000001718 #22	ENSGT00940000159241 #23	ENSGT01090000260082.d.a.a.a.b #24	ENSGT00530000063734.a #25	ENSGT00940000158842 #26	ENSGT00940000160160 #27	ENSGT00940000161094 #28	ENSGT00940000153988.A #29	ENSGT00940000155773.b #31	ENSGT00940000154574.d #32	ENSGT00940000155655.B #33	ENSGT00940000157230 #34	ENSGT00940000155359 #35	ENSGT00530000063836.a #36	ENSGT01050000244842.a.b.a #37	ENSGT01050000244842.a.b.b.a.a.a ##37
Chinese hamster chok1gshd	MODERN SPECIES	188	Rbm43 (ENSCGRG00001011129) #7	Nmi (ENSCGRG00001000480) ##7	Tnfaip6 (ENSCGRG00001024845) #9	Rif1 (ENSCGRG00001024589) #10	Neb (ENSCGRG00001022624) #11	Arl5a (ENSCGRG00001024645) #12	Cacnb4 (ENSCGRG00001023366) #13	Stam2 (ENSCGRG00001023878) #14	Fmnl2 (ENSCGRG00001024179) #15	Prpf40a (ENSCGRG00001022526) #16	Arl6ip6 (ENSCGRG00001021408) #17	Rprm (ENSCGRG00001009462) #18	Galnt13 (ENSCGRG00001004190) #19	Kcnj3 (ENSCGRG00001000982) #20	Nr4a2 (ENSCGRG00001001426) #21	Gpd2 (ENSCGRG00001024452) #22	Galnt5 (ENSCGRG00001004718) #23	Ermn (ENSCGRG00001016956) #24	Cytip (ENSCGRG00001024713) #25	Acvr1c (ENSCGRG00001023713) #26	Acvr1 (ENSCGRG00001023684) #27	Upp2 (ENSCGRG00001011463) #28	Ccdc148 (ENSCGRG00001023650) #29	Pkp4 (ENSCGRG00001024825) #31	ENSCGRG00001008878 #32	Tanc1 (ENSCGRG00001015684) #33	Baz2b (ENSCGRG00001011640) #35	Marchf7 (ENSCGRG00001024547) #36	Cd302 (ENSCGRG00001000797) #37	Ly75 (ENSCGRG00001024055) ##37	Pla2r1 (ENSCGRG00001024467) ##37
Golden Hamster	MODERN SPECIES	633	Rnd3 (ENSMAUG00000011617)	Rbm43 (ENSMAUG00000012908) #7	Nmi (ENSMAUG00000011421) ##7	Rif1 (ENSMAUG00000013158) #10	Neb (ENSMAUG00000004953) #11	Arl5a (ENSMAUG00000011769) #12	Cacnb4 (ENSMAUG00000014567) #13	Stam2 (ENSMAUG00000000322) #14	Fmnl2 (ENSMAUG00000013048) #15	Prpf40a (ENSMAUG00000020074) #16	Arl6ip6 (ENSMAUG00000001987) #17	Rprm (ENSMAUG00000018060) #18	Galnt13 (ENSMAUG00000007643) #19	ENSMAUG00000018084 #20	Nr4a2 (ENSMAUG00000009371) #21	Gpd2 (ENSMAUG00000015110) #22	Galnt5 (ENSMAUG00000015690) #23	Ermn (ENSMAUG00000017936) #24	Cytip (ENSMAUG00000018649) #25	Acvr1c (ENSMAUG00000018969) #26	Upp2 (ENSMAUG00000000231) #28	Ccdc148 (ENSMAUG00000000409) #29	Pkp4 (ENSMAUG00000019677) #31	Dapl1 (ENSMAUG00000007222) #32	Tanc1 (ENSMAUG00000016219) #33	Wdsub1 (ENSMAUG00000002168) #34	ENSMAUG00000007486 #35	ENSMAUG00000008617 #35	Ly75 (ENSMAUG00000015663) ##37	Pla2r1 (ENSMAUG00000002027) ##37	Itgb6 (ENSMAUG00000013668)
Murinae	ANCESTRAL SPECIES	1	ENSGT00530000063686.a.b #7	ENSGT00530000063686.a.a ##7	ENSGT00940000157201 #9	ENSGT00390000012204 #10	ENSGT00940000154533.b.d #11	ENSGT00940000154714 #12	ENSGT00950000182837.b.b #13	ENSGT00940000157055 #14	ENSGT00940000155515.a.b.b #15	ENSGT00930000150980.a #16	ENSGT00390000009987 #17	ENSGT00390000010523.c.b #18	ENSGT00940000158904 #19	ENSGT01080000257365.b.a.a.b.a #20	ENSGT00950000183038.a.b.b.b #21	ENSGT00390000001718 #22	ENSGT00940000159241 #23	ENSGT01090000260082.d.a.a.a.b #24	ENSGT00530000063734.a #25	ENSGT00940000158842 #26	ENSGT00940000160160 #27	ENSGT00940000161094 #28	ENSGT00940000153988.A #29	ENSGT00940000155773.b #31	ENSGT00940000154574.d #32	ENSGT00940000155655.B #33	ENSGT00940000157230 #34	ENSGT00940000155359 #35	ENSGT00530000063836.a #36	ENSGT01050000244842.a.b.a #37	ENSGT01050000244842.a.b.b.a.a.a ##37
Mus	ANCESTRAL SPECIES	1	ENSGT00530000063686.a.b #7	ENSGT00530000063686.a.a ##7	ENSGT00940000157201 #9	ENSGT00390000012204 #10	ENSGT00940000154533.b.d #11	ENSGT00940000154714 #12	ENSGT00950000182837.b.b #13	ENSGT00940000157055 #14	ENSGT00940000155515.a.b.b #15	ENSGT00930000150980.a #16	ENSGT00390000009987 #17	ENSGT00390000010523.c.b #18	ENSGT00940000158904 #19	ENSGT01080000257365.b.a.a.b.a #20	ENSGT00950000183038.a.b.b.b #21	ENSGT00390000001718 #22	ENSGT00940000159241 #23	ENSGT01090000260082.d.a.a.a.b #24	ENSGT00530000063734.a #25	ENSGT00940000158842 #26	ENSGT00860000136335	ENSGT00940000160160 #27	ENSGT00940000161094 #28	ENSGT00940000153988.A #29	ENSGT00940000155773.b #31	ENSGT00940000154574.d #32	ENSGT00940000155655.B #33	ENSGT00940000157230 #34	ENSGT00940000155359 #35	ENSGT00530000063836.a #36	ENSGT01050000244842.a.b.a #37
Mus_A	ANCESTRAL SPECIES		ENSGT00530000063686.a.b #7	ENSGT00530000063686.a.a ##7	ENSGT00940000157201 #9	ENSGT00390000012204 #10	ENSGT00940000154533.b.d #11	ENSGT00940000154714 #12	ENSGT00950000182837.b.b #13	ENSGT00940000157055 #14	ENSGT00940000155515.a.b.b #15	ENSGT00930000150980.a #16	ENSGT00390000009987 #17	ENSGT00390000010523.c.b #18	ENSGT00940000158904 #19	ENSGT01080000257365.b.a.a.b.a #20	ENSGT00950000183038.a.b.b.b #21	ENSGT00390000001718 #22	ENSGT00940000159241 #23	ENSGT01090000260082.d.a.a.a.b #24	ENSGT00530000063734.a #25	ENSGT00940000158842 #26	ENSGT00860000136335	ENSGT00940000160160 #27	ENSGT00940000161094 #28	ENSGT00940000153988.A #29	ENSGT00940000155773.b #31	ENSGT00940000154574.d #32	ENSGT00940000155655.B #33	ENSGT00940000157230 #34	ENSGT00940000155359 #35	ENSGT00530000063836.a #36	ENSGT01050000244842.a.b.a #37
Mus_B	ANCESTRAL SPECIES	1	ENSGT00530000063686.a.b #7	ENSGT00530000063686.a.a ##7	ENSGT00940000157201 #9	ENSGT00390000012204 #10	ENSGT00940000154533.b.d #11	ENSGT00940000154714 #12	ENSGT00950000182837.b.b #13	ENSGT00940000157055 #14	ENSGT00940000155515.a.b.b #15	ENSGT00930000150980.a #16	ENSGT00390000009987 #17	ENSGT00390000010523.c.b #18	ENSGT00940000158904 #19	ENSGT01080000257365.b.a.a.b.a #20	ENSGT00950000183038.a.b.b.b #21	ENSGT00390000001718 #22	ENSGT00940000159241 #23	ENSGT01090000260082.d.a.a.a.b #24	ENSGT00530000063734.a #25	ENSGT00940000158842 #26	ENSGT00860000136335	ENSGT00940000160160 #27	ENSGT00940000161094 #28	ENSGT00940000153988.A #29	ENSGT00940000155773.b #31	ENSGT00940000154574.d #32	ENSGT00940000155655.B #33	ENSGT00940000157230 #34	ENSGT00940000155359 #35	ENSGT00530000063836.a #36	ENSGT01050000244842.a.b.a #37
Mus_C	ANCESTRAL SPECIES		ENSGT00530000063686.a.b #7	ENSGT00530000063686.a.a ##7	ENSGT00940000157201 #9	ENSGT00390000012204 #10	ENSGT00940000154533.b.d #11	ENSGT00940000154714 #12	ENSGT00950000182837.b.b #13	ENSGT00940000157055 #14	ENSGT00940000155515.a.b.b #15	ENSGT00930000150980.a #16	ENSGT00390000009987 #17	ENSGT00390000010523.c.b #18	ENSGT00940000158904 #19	ENSGT01080000257365.b.a.a.b.a #20	ENSGT00950000183038.a.b.b.b #21	ENSGT00390000001718 #22	ENSGT00940000159241 #23	ENSGT01090000260082.d.a.a.a.b #24	ENSGT00530000063734.a #25	ENSGT00940000158842 #26	ENSGT00860000136335	ENSGT00940000160160 #27	ENSGT00940000161094 #28	ENSGT00940000153988.A #29	ENSGT00940000155773.b #31	ENSGT00940000154574.d #32	ENSGT00940000155655.B #33	ENSGT00940000157230 #34	ENSGT00940000155359 #35	ENSGT00530000063836.a #36	ENSGT01050000244842.a.b.a #37
spretus	MODERN SPECIES	11	Rbm43 (MGP_SPRETEiJ_G0024473) #7	Nmi (MGP_SPRETEiJ_G0024474) ##7	Tnfaip6 (MGP_SPRETEiJ_G0024475) #9	Rif1 (MGP_SPRETEiJ_G0024476) #10	Neb (MGP_SPRETEiJ_G0024477) #11	Arl5a (MGP_SPRETEiJ_G0024478) #12	Cacnb4 (MGP_SPRETEiJ_G0024479) #13	Stam2 (MGP_SPRETEiJ_G0024480) #14	Fmnl2 (MGP_SPRETEiJ_G0024481) #15	Prpf40a (MGP_SPRETEiJ_G0024482) #16	Arl6ip6 (MGP_SPRETEiJ_G0024483) #17	Rprm (MGP_SPRETEiJ_G0024484) #18	Galnt13 (MGP_SPRETEiJ_G0024485) #19	Kcnj3 (MGP_SPRETEiJ_G0024486) #20	Nr4a2 (MGP_SPRETEiJ_G0024487) #21	Gpd2 (MGP_SPRETEiJ_G0024488) #22	Galnt5 (MGP_SPRETEiJ_G0024489) #23	Ermn (MGP_SPRETEiJ_G0024490) #24	Cytip (MGP_SPRETEiJ_G0024491) #25	Acvr1c (MGP_SPRETEiJ_G0024492) #26	Acvr1 (MGP_SPRETEiJ_G0024493) #27	MGP_SPRETEiJ_G0024494	Upp2 (MGP_SPRETEiJ_G0024495) #28	Ccdc148 (MGP_SPRETEiJ_G0024496) #29	MGP_SPRETEiJ_G0024497	Pkp4 (MGP_SPRETEiJ_G0024498) #31	Dapl1 (MGP_SPRETEiJ_G0024499) #32	Tanc1 (MGP_SPRETEiJ_G0024500) #33	Wdsub1 (MGP_SPRETEiJ_G0024501) #34	Baz2b (MGP_SPRETEiJ_G0024502) #35	Marchf7 (MGP_SPRETEiJ_G0024503) #36
Steppe mouse	MODERN SPECIES	2744															Nr4a2 (ENSMSIG00000032191) #21	Gpd2 (ENSMSIG00000032187) #22
Mouse	MODERN SPECIES	11	Rbm43 (ENSMUSG00000036249) #7	Nmi (ENSMUSG00000026946) ##7	Tnfaip6 (ENSMUSG00000053475) #9	Rif1 (ENSMUSG00000036202) #10	Neb (ENSMUSG00000026950) #11	Arl5a (ENSMUSG00000036093) #12	Cacnb4 (ENSMUSG00000017412) #13	Stam2 (ENSMUSG00000055371) #14	Fmnl2 (ENSMUSG00000036053) #15	Prpf40a (ENSMUSG00000061136) #16	Arl6ip6 (ENSMUSG00000026960) #17	Rprm (ENSMUSG00000075334) #18	Galnt13 (ENSMUSG00000060988) #19	Kcnj3 (ENSMUSG00000026824) #20	Nr4a2 (ENSMUSG00000026826) #21	Gpd2 (ENSMUSG00000026827) #22	Galnt5 (ENSMUSG00000026828) #23	Ermn (ENSMUSG00000026830) #24	Cytip (ENSMUSG00000026832) #25	Acvr1c (ENSMUSG00000026834) #26	Acvr1 (ENSMUSG00000026836) #27	Upp2 (ENSMUSG00000026839) #28	Ccdc148 (ENSMUSG00000036641) #29	Pkp4 (ENSMUSG00000026991) #31	Dapl1 (ENSMUSG00000026989) #32	Tanc1 (ENSMUSG00000035168) #33	Wdsub1 (ENSMUSG00000026988) #34	Baz2b (ENSMUSG00000026987) #35	Marchf7 (ENSMUSG00000026977) #36	Cd302 (ENSMUSG00000060703) #37	Ly75 (ENSMUSG00000026980) ##37
Ryukyu mouse	MODERN SPECIES	11	Rbm43 (MGP_CAROLIEiJ_G0023552) #7	Nmi (MGP_CAROLIEiJ_G0023553) ##7	Tnfaip6 (MGP_CAROLIEiJ_G0023554) #9	Rif1 (MGP_CAROLIEiJ_G0023555) #10	MGP_CAROLIEiJ_G0023556 #11	Arl5a (MGP_CAROLIEiJ_G0023557) #12	Cacnb4 (MGP_CAROLIEiJ_G0023558) #13	Stam2 (MGP_CAROLIEiJ_G0023559) #14	Fmnl2 (MGP_CAROLIEiJ_G0023560) #15	Prpf40a (MGP_CAROLIEiJ_G0023561) #16	Arl6ip6 (MGP_CAROLIEiJ_G0023562) #17	Rprm (MGP_CAROLIEiJ_G0023563) #18	Galnt13 (MGP_CAROLIEiJ_G0023564) #19	Kcnj3 (MGP_CAROLIEiJ_G0023565) #20	Nr4a2 (MGP_CAROLIEiJ_G0023566) #21	Gpd2 (MGP_CAROLIEiJ_G0023567) #22	Galnt5 (MGP_CAROLIEiJ_G0023568) #23	Ermn (MGP_CAROLIEiJ_G0023569) #24	Cytip (MGP_CAROLIEiJ_G0023570) #25	Acvr1c (MGP_CAROLIEiJ_G0023571) #26	Acvr1 (MGP_CAROLIEiJ_G0023572) #27	MGP_CAROLIEiJ_G0023573	Upp2 (MGP_CAROLIEiJ_G0023574) #28	Ccdc148 (MGP_CAROLIEiJ_G0023575) #29	Pkp4 (MGP_CAROLIEiJ_G0023576) #31	Dapl1 (MGP_CAROLIEiJ_G0023577) #32	Tanc1 (MGP_CAROLIEiJ_G0023578) #33	Wdsub1 (MGP_CAROLIEiJ_G0023579) #34	Baz2b (MGP_CAROLIEiJ_G0023580) #35	Marchf7 (MGP_CAROLIEiJ_G0023581) #36	Cd302 (MGP_CAROLIEiJ_G0023582) #37
Shrew mouse	MODERN SPECIES	16	Rbm43 (MGP_PahariEiJ_G0025003) #7	Nmi (MGP_PahariEiJ_G0025004) ##7	Tnfaip6 (MGP_PahariEiJ_G0025005) #9	Rif1 (MGP_PahariEiJ_G0025006) #10	MGP_PahariEiJ_G0025007 #11	Arl5a (MGP_PahariEiJ_G0025008) #12	Cacnb4 (MGP_PahariEiJ_G0025009) #13	Stam2 (MGP_PahariEiJ_G0025010) #14	Fmnl2 (MGP_PahariEiJ_G0025011) #15	Prpf40a (MGP_PahariEiJ_G0025012) #16	Arl6ip6 (MGP_PahariEiJ_G0025013) #17	Rprm (MGP_PahariEiJ_G0025014) #18	Galnt13 (MGP_PahariEiJ_G0025015) #19	Kcnj3 (MGP_PahariEiJ_G0025016) #20	Nr4a2 (MGP_PahariEiJ_G0025017) #21	Gpd2 (MGP_PahariEiJ_G0025018) #22	Galnt5 (MGP_PahariEiJ_G0025019) #23	Ermn (MGP_PahariEiJ_G0025020) #24	Cytip (MGP_PahariEiJ_G0025021) #25	Acvr1c (MGP_PahariEiJ_G0025022) #26	Acvr1 (MGP_PahariEiJ_G0025023) #27	MGP_PahariEiJ_G0025024	Upp2 (MGP_PahariEiJ_G0025025) #28	Ccdc148 (MGP_PahariEiJ_G0025026) #29	Pkp4 (MGP_PahariEiJ_G0025027) #31	Dapl1 (MGP_PahariEiJ_G0025028) #32	Tanc1 (MGP_PahariEiJ_G0025029) #33	Wdsub1 (MGP_PahariEiJ_G0025030) #34	Baz2b (MGP_PahariEiJ_G0025031) #35	Marchf7 (MGP_PahariEiJ_G0025032) #36	Cd302 (MGP_PahariEiJ_G0025033) #37
Rat	MODERN SPECIES	13	AABR07052125.1 (ENSRNOG00000006829)	Arl5a (ENSRNOG00000006839) #12	Cacnb4 (ENSRNOG00000007666) #13	Stam2 (ENSRNOG00000027447) #14	Ndufa2-ps1 (ENSRNOG00000064291)	Dppa5 (ENSRNOG00000029793)	Fmnl2 (ENSRNOG00000055567) #15	Prpf40a (ENSRNOG00000004864) #16	Arl6ip6 (ENSRNOG00000005074) #17	Micos10-ps2 (ENSRNOG00000065751)	Rprm (ENSRNOG00000005109) #18	Galnt13 (ENSRNOG00000005335) #19	ENSRNOG00000065543	Kcnj3 (ENSRNOG00000005369) #20	Nr4a2 (ENSRNOG00000005600) #21	Gpd2 (ENSRNOG00000033824) #22	Galnt5 (ENSRNOG00000004645) #23	Ermn (ENSRNOG00000021472) #24	Cytip (ENSRNOG00000004772) #25	Acvr1c (ENSRNOG00000004828) #26	Acvr1 (ENSRNOG00000005033) #27	Gapdh-ps1 (ENSRNOG00000071205)	Upp2 (ENSRNOG00000005341) #28	Ccdc148 (ENSRNOG00000057740) #29	Pkp4 (ENSRNOG00000005504) #31	Dapl1 (ENSRNOG00000005743) #32	ENSRNOG00000064239	Tanc1 (ENSRNOG00000025394) #33	Wdsub1 (ENSRNOG00000005990) #34	Baz2b (ENSRNOG00000056984) #35	LOC100361645 (ENSRNOG00000031951)
Upper Galilee mountains blind mole rat	MODERN SPECIES	1170															Nr4a2 (ENSNGAG00000001664) #21	Gpd2 (ENSNGAG00000006795) #22	Galnt5 (ENSNGAG00000011264) #23	Ermn (ENSNGAG00000016602) #24	Cytip (ENSNGAG00000017542) #25	Acvr1c (ENSNGAG00000020794) #26	Acvr1 (ENSNGAG00000003562) #27
Lesser Egyptian jerboa	MODERN SPECIES	46	Neb (ENSJJAG00000012568) #11	ENSJJAG00000015512 #12	Cacnb4 (ENSJJAG00000016900) #13	Stam2 (ENSJJAG00000009817) #14	Fmnl2 (ENSJJAG00000021375) #15	Prpf40a (ENSJJAG00000004636) #16	Arl6ip6 (ENSJJAG00000019266) #17	ENSJJAG00000023428	Rprm (ENSJJAG00000012518) #18	ENSJJAG00000002819	Galnt13 (ENSJJAG00000010483) #19	Kcnj3 (ENSJJAG00000007165) #20	ENSJJAG00000022824	Nr4a2 (ENSJJAG00000018362) #21	ENSJJAG00000022660	ENSJJAG00000018801 #22	Galnt5 (ENSJJAG00000004437) #23	Ermn (ENSJJAG00000017224) #24	Cytip (ENSJJAG00000015679) #25	Acvr1c (ENSJJAG00000000840) #26	Acvr1 (ENSJJAG00000021757) #27	Upp2 (ENSJJAG00000019359) #28	Ccdc148 (ENSJJAG00000012594) #29	Pkp4 (ENSJJAG00000010175) #31	Dapl1 (ENSJJAG00000008272) #32	Tanc1 (ENSJJAG00000015166) #33	Wdsub1 (ENSJJAG00000017632) #34	Baz2b (ENSJJAG00000021770) #35	ENSJJAG00000001578	Marchf7 (ENSJJAG00000019998) #36	Cd302 (ENSJJAG00000020650) #37
Kangaroo rat	MODERN SPECIES	324	Nmi (ENSDORG00000024973) ##7	ENSDORG00000028394	Tnfaip6 (ENSDORG00000016446) #9	Neb (ENSDORG00000004258) #11	ENSDORG00000003082 #12	Cacnb4 (ENSDORG00000007926) #13	Stam2 (ENSDORG00000007927) #14	Fmnl2 (ENSDORG00000029929) #15	Prpf40a (ENSDORG00000006757) #16	Arl6ip6 (ENSDORG00000006761) #17	ENSDORG00000028417	Rprm (ENSDORG00000003407) #18	Galnt13 (ENSDORG00000011932) #19	Kcnj3 (ENSDORG00000005402) #20	Nr4a2 (ENSDORG00000007987) #21	Gpd2 (ENSDORG00000004451) #22	Galnt5 (ENSDORG00000003518) #23	Ermn (ENSDORG00000003519) #24	ENSDORG00000023938	Cytip (ENSDORG00000015983) #25	Acvr1c (ENSDORG00000010112) #26	Acvr1 (ENSDORG00000013457) #27	Upp2 (ENSDORG00000005683) #28	Ccdc148 (ENSDORG00000008724) #29	Pkp4 (ENSDORG00000007017) #31	Dapl1 (ENSDORG00000009147) #32	Tanc1 (ENSDORG00000010962) #33	Wdsub1 (ENSDORG00000005593) #34	Baz2b (ENSDORG00000005595) #35	Marchf7 (ENSDORG00000006639) #36	Cd302 (ENSDORG00000006643) #37
Rodentia_A	ANCESTRAL SPECIES	13	ENSGT00530000063686.a.b #7	ENSGT00530000063686.a.a ##7	ENSGT00940000157201 #9	ENSGT00390000012204 #10	ENSGT00940000154533.b.d #11	ENSGT00940000154714 #12	ENSGT00950000182837.b.b #13	ENSGT00940000157055 #14	ENSGT00940000155515.a.b.b #15	ENSGT00930000150980.a #16	ENSGT00390000009987 #17	ENSGT00390000010523.c.b #18	ENSGT00940000158904 #19	ENSGT01080000257365.b.a.a.b.a #20	ENSGT00950000183038.a.b.b.b #21	ENSGT00390000001718 #22	ENSGT00940000159241 #23	ENSGT01090000260082.d.a.a.a.b #24	ENSGT00530000063734.a #25	ENSGT00940000158842 #26	ENSGT00940000160160 #27	ENSGT00940000161094 #28	ENSGT00940000153988.A #29	ENSGT00940000155773.b #31	ENSGT00940000154574.d #32	ENSGT00940000155655.B #33	ENSGT00940000157230 #34	ENSGT00940000155359 #35	ENSGT00530000063836.a #36	ENSGT01050000244842.a.b.a #37	ENSGT01050000244842.a.b.b.a.a.a ##37
Sciuridae	ANCESTRAL SPECIES	10	ENSGT00530000063686.a.b #7	ENSGT00530000063686.a.a ##7	ENSGT00940000157201 #9	ENSGT00390000012204 #10	ENSGT00940000154533.b.d #11	ENSGT00940000154714.fb.a #12	ENSGT00950000182837.b.b #13	ENSGT00940000157055 #14	ENSGT00940000155515.a.b.b #15	ENSGT00930000150980.a #16	ENSGT00390000009987 #17	ENSGT00390000010523.c.b #18	ENSGT00940000158904 #19	ENSGT01080000257365.b.a.a.b.a #20	ENSGT00950000183038.a.b.b.b #21	ENSGT00390000001718 #22	ENSGT00940000159241 #23	ENSGT01090000260082.d.a.a.a.b #24	ENSGT00530000063734.a #25	ENSGT00940000158842 #26	ENSGT00940000160160 #27	ENSGT00940000161094 #28	ENSGT00940000153988.A #29	ENSGT00940000155773.b #31	ENSGT00940000154574.d #32	ENSGT00940000155655.B #33	ENSGT00940000157230 #34	ENSGT00940000155359 #35	ENSGT00530000063836.a #36	ENSGT01050000244842.a.b.a #37	ENSGT01050000244842.a.b.b.a.a.a ##37
Marmotini	ANCESTRAL SPECIES	2	ENSGT00530000063686.a.b #7	ENSGT00530000063686.a.a ##7	ENSGT00940000157201 #9	ENSGT00390000012204 #10	ENSGT00940000154533.b.d #11	ENSGT00940000154714.fb.a #12	ENSGT00950000182837.b.b #13	ENSGT00940000157055 #14	ENSGT00940000155515.a.b.b #15	ENSGT00930000150980.a #16	ENSGT00390000009987 #17	ENSGT00390000010523.c.b #18	ENSGT00940000158904 #19	ENSGT01080000257365.b.a.a.b.a #20	ENSGT00950000183038.a.b.b.b #21	ENSGT00390000001718 #22	ENSGT00940000159241 #23	ENSGT01090000260082.d.a.a.a.b #24	ENSGT00530000063734.a #25	ENSGT00940000158842 #26	ENSGT00940000160160 #27	ENSGT00940000161094 #28	ENSGT00940000153988.A #29	ENSGT00940000155773.b #31	ENSGT00940000154574.d #32	ENSGT00940000155655.B #33	ENSGT00940000157230 #34	ENSGT00940000155359 #35	ENSGT00530000063836.a #36	ENSGT01050000244842.a.b.a #37	ENSGT01050000244842.a.b.b.a.a.a ##37
Marmotini_b	ANCESTRAL SPECIES	10	ENSGT00530000063686.a.b #7	ENSGT00530000063686.a.a ##7	ENSGT00940000157201 #9	ENSGT00390000012204 #10	ENSGT00940000154533.b.d #11	ENSGT00940000154714.fb.a #12	ENSGT00950000182837.b.b #13	ENSGT00940000157055 #14	ENSGT00940000155515.a.b.b #15	ENSGT00930000150980.a #16	ENSGT00390000009987 #17	ENSGT00390000010523.c.b #18	ENSGT00940000158904 #19	ENSGT01080000257365.b.a.a.b.a #20	ENSGT00950000183038.a.b.b.b #21	ENSGT00390000001718 #22	ENSGT00940000159241 #23	ENSGT01090000260082.d.a.a.a.b #24	ENSGT00530000063734.a #25	ENSGT00940000158842 #26	ENSGT00940000160160 #27	ENSGT00940000161094 #28	ENSGT00940000153988.A #29	ENSGT00940000155773.b #31	ENSGT00940000154574.d #32	ENSGT00940000155655.B #33	ENSGT00940000157230 #34	ENSGT00940000155359 #35	ENSGT00530000063836.a #36	ENSGT01050000244842.a.b.a #37	ENSGT01050000244842.a.b.b.a.a.a ##37
Arctic ground squirrel	MODERN SPECIES	247															NR4A2 (ENSUPAG00010002498) #21	GPD2 (ENSUPAG00010002450) #22	GALNT5 (ENSUPAG00010002439) #23	ERMN (ENSUPAG00010002433) #24	CYTIP (ENSUPAG00010002402) #25	ACVR1C (ENSUPAG00010002309) #26	ACVR1 (ENSUPAG00010002272) #27	CCDC148 (ENSUPAG00010002234) #29	PKP4 (ENSUPAG00010001863) #31	DAPL1 (ENSUPAG00010001849) #32	TANC1 (ENSUPAG00010001635) #33	WDSUB1 (ENSUPAG00010001603) #34	BAZ2B (ENSUPAG00010001347) #35
Squirrel	MODERN SPECIES	69	RBM43 (ENSSTOG00000016311) #7	NMI (ENSSTOG00000028659) ##7	TNFAIP6 (ENSSTOG00000016314) #9	RIF1 (ENSSTOG00000020712) #10	NEB (ENSSTOG00000016315) #11	ARL5A (ENSSTOG00000016326) #12	CACNB4 (ENSSTOG00000016328) #13	STAM2 (ENSSTOG00000025023) #14	FMNL2 (ENSSTOG00000001614) #15	PRPF40A (ENSSTOG00000001642) #16	ARL6IP6 (ENSSTOG00000001658) #17	RPRM (ENSSTOG00000026311) #18	GALNT13 (ENSSTOG00000011628) #19	KCNJ3 (ENSSTOG00000014395) #20	NR4A2 (ENSSTOG00000002966) #21	GPD2 (ENSSTOG00000005221) #22	ENSSTOG00000021734 #23	ERMN (ENSSTOG00000006613) #24	CYTIP (ENSSTOG00000009143) #25	ACVR1C (ENSSTOG00000009159) #26	ACVR1 (ENSSTOG00000004704) #27	UPP2 (ENSSTOG00000030477) #28	CCDC148 (ENSSTOG00000016271) #29	PKP4 (ENSSTOG00000007684) #31	DAPL1 (ENSSTOG00000007725) #32	TANC1 (ENSSTOG00000009738) #33	WDSUB1 (ENSSTOG00000009762) #34	BAZ2B (ENSSTOG00000009772) #35	MARCHF7 (ENSSTOG00000024765) #36	CD302 (ENSSTOG00000030907) #37	LY75 (ENSSTOG00000015933) ##37
Alpin marmot	MODERN SPECIES	5	RIF1 (ENSMMMG00000021851) #10	NEB (ENSMMMG00000021921) #11	ENSMMMG00000022061 #12	CACNB4 (ENSMMMG00000022074) #13	STAM2 (ENSMMMG00000022104) #14	ENSMMMG00000022120	FMNL2 (ENSMMMG00000022132) #15	PRPF40A (ENSMMMG00000022291) #16	ARL6IP6 (ENSMMMG00000022320) #17	ENSMMMG00000022335 #19	ENSMMMG00000022338 #19	ENSMMMG00000022342 #19	ENSMMMG00000022354	KCNJ3 (ENSMMMG00000022368) #20	NR4A2 (ENSMMMG00000022388) #21	GPD2 (ENSMMMG00000022395) #22	ENSMMMG00000022423 #23	ENSMMMG00000022427 #23	ERMN (ENSMMMG00000022432) #24	CYTIP (ENSMMMG00000022447) #25	ACVR1C (ENSMMMG00000022458) #26	ACVR1 (ENSMMMG00000022485) #27	UPP2 (ENSMMMG00000022512) #28	CCDC148 (ENSMMMG00000022526) #29	PKP4 (ENSMMMG00000022548) #31	DAPL1 (ENSMMMG00000022578) #32	TANC1 (ENSMMMG00000022589) #33	WDSUB1 (ENSMMMG00000022608) #34	BAZ2B (ENSMMMG00000022620) #35	MARCHF7 (ENSMMMG00000022639) #36	CD302 (ENSMMMG00000022645) #37
Eurasian red squirrel	MODERN SPECIES	12	RIF1 (ENSSVLG00005003716) #10	NEB (ENSSVLG00005004118) #11	ENSSVLG00005004729	ENSSVLG00005004741 #12	CACNB4 (ENSSVLG00005005336) #13	ENSSVLG00005007179	STAM2 (ENSSVLG00005007197) #14	FMNL2 (ENSSVLG00005007277) #15	ENSSVLG00005007428	PRPF40A (ENSSVLG00005007429) #16	ENSSVLG00005007524 #17	RPRM (ENSSVLG00005007559) #18	ENSSVLG00005007594 #19	KCNJ3 (ENSSVLG00005007729) #20	NR4A2 (ENSSVLG00005007787) #21	GPD2 (ENSSVLG00005007886) #22	ENSSVLG00005008042 #23	ERMN (ENSSVLG00005008084) #24	CYTIP (ENSSVLG00005008173) #25	ACVR1C (ENSSVLG00005008270) #26	ACVR1 (ENSSVLG00005008490) #27	ENSSVLG00005008520	UPP2 (ENSSVLG00005008546) #28	CCDC148 (ENSSVLG00005008598) #29	PKP4 (ENSSVLG00005008751) #31	ENSSVLG00005008811	DAPL1 (ENSSVLG00005008852) #32	TANC1 (ENSSVLG00005009095) #33	WDSUB1 (ENSSVLG00005010265) #34	BAZ2B (ENSSVLG00005010334) #35	MARCHF7 (ENSSVLG00005010418) #36
Hystricomorpha	ANCESTRAL SPECIES	20	ENSGT00530000063686.a.b #7	ENSGT00530000063686.a.a ##7	ENSGT00940000157201 #9	ENSGT00390000012204 #10	ENSGT00940000154533.b.d #11	ENSGT00940000154714 #12	ENSGT00950000182837.b.b #13	ENSGT00940000157055 #14	ENSGT00940000155515.a.b.b #15	ENSGT00930000150980.a #16	ENSGT00390000009987 #17	ENSGT00390000010523.c.b #18	ENSGT00940000158904 #19	ENSGT01080000257365.b.a.a.b.a #20	ENSGT00950000183038.a.b.b.b #21	ENSGT00390000001718 #22	ENSGT00940000159241 #23	ENSGT01090000260082.d.a.a.a.b #24	ENSGT00530000063734.a #25	ENSGT00940000158842 #26	ENSGT00940000160160 #27	ENSGT00940000161094 #28	ENSGT00940000153988.A #29	ENSGT00940000155773.b #31	ENSGT00940000154574.d.f #32	ENSGT00940000155655.B #33	ENSGT00940000157230 #34	ENSGT00940000155359 #35	ENSGT00530000063836.a #36	ENSGT01050000244842.a.b.a #37	ENSGT01050000244842.a.b.b.a.a.a ##37
Hystricomorpha_a	ANCESTRAL SPECIES	17	ENSGT00530000063686.a.b #7	ENSGT00530000063686.a.a ##7	ENSGT00940000157201 #9	ENSGT00390000012204 #10	ENSGT00940000154533.b.d #11	ENSGT00940000154714 #12	ENSGT00950000182837.b.b #13	ENSGT00940000157055 #14	ENSGT00940000155515.a.b.b #15	ENSGT00930000150980.a #16	ENSGT00390000009987 #17	ENSGT00390000010523.c.b #18	ENSGT00940000158904 #19	ENSGT01080000257365.b.a.a.b.a #20	ENSGT00950000183038.a.b.b.b #21	ENSGT00390000001718 #22	ENSGT00940000159241 #23	ENSGT01090000260082.d.a.a.a.b #24	ENSGT00530000063734.a #25	ENSGT00940000158842 #26	ENSGT00940000160160 #27	ENSGT00940000161094 #28	ENSGT00940000153988.A #29	ENSGT00940000155773.b #31	ENSGT00940000154574.d.f #32	ENSGT00940000155655.B #33	ENSGT00940000157230 #34	ENSGT00940000155359 #35	ENSGT00530000063836.a #36	ENSGT01050000244842.a.b.a #37	ENSGT01050000244842.a.b.b.a.a.a ##37
Hystricomorpha_b	ANCESTRAL SPECIES	24															ENSGT00950000183038.a.b.b.b #21	ENSGT00390000001718 #22	ENSGT00940000159241 #23	ENSGT01090000260082.d.a.a.a.b #24	ENSGT00530000063734.a #25	ENSGT00940000158842 #26	ENSGT00940000160160 #27	ENSGT00940000161094 #28	ENSGT00940000153988.A #29	ENSGT00940000155773.b #31	ENSGT00940000154574.d.f #32	ENSGT00940000155655.B #33	ENSGT00940000157230 #34	ENSGT00940000155359 #35	ENSGT00530000063836.a #36	ENSGT01050000244842.a.b.a #37	ENSGT01050000244842.a.b.b.a.a.a ##37
Long-tailed chinchilla	MODERN SPECIES	156															NR4A2 (ENSCLAG00000003290) #21	GPD2 (ENSCLAG00000002866) #22	GALNT5 (ENSCLAG00000003428) #23	ERMN (ENSCLAG00000003341) #24	CYTIP (ENSCLAG00000003247) #25	ACVR1C (ENSCLAG00000003034) #26	ACVR1 (ENSCLAG00000004342) #27	UPP2 (ENSCLAG00000003919) #28	CCDC148 (ENSCLAG00000003622) #29	PKP4 (ENSCLAG00000005831) #31	DAPL1 (ENSCLAG00000004812) #32	TANC1 (ENSCLAG00000004542) #33	ENSCLAG00000007913 #34	BAZ2B (ENSCLAG00000006190) #35	ENSCLAG00000009790	MARCHF7 (ENSCLAG00000009318) #36	CD302 (ENSCLAG00000012904) #37
Degu	MODERN SPECIES	73											ENSODEG00000014301	ENSODEG00000014644	ENSODEG00000020160	ENSODEG00000014372	NR4A2 (ENSODEG00000014223) #21	GPD2 (ENSODEG00000013945) #22	ENSODEG00000014559	GALNT5 (ENSODEG00000014096) #23	ERMN (ENSODEG00000014133) #24	ENSODEG00000014529 #25	ACVR1C (ENSODEG00000013991) #26	ACVR1 (ENSODEG00000014264) #27	UPP2 (ENSODEG00000014593) #28	CCDC148 (ENSODEG00000014894) #29	ENSODEG00000020204	PKP4 (ENSODEG00000014779) #31	DAPL1 (ENSODEG00000014464) #32	TANC1 (ENSODEG00000014910) #33	WDSUB1 (ENSODEG00000014178) #34	BAZ2B (ENSODEG00000014127) #35	ENSODEG00000015125
Guinea pig	MODERN SPECIES	3	NMI (ENSCPOG00000013053) ##7	TNFAIP6 (ENSCPOG00000007974) #9	ENSCPOG00000038795	RIF1 (ENSCPOG00000037898) #10	NEB (ENSCPOG00000005161) #11	ARL5A (ENSCPOG00000005209) #12	CACNB4 (ENSCPOG00000026052) #13	STAM2 (ENSCPOG00000002847) #14	FMNL2 (ENSCPOG00000013482) #15	PRPF40A (ENSCPOG00000013494) #16	RPRM (ENSCPOG00000005597) #18	GALNT13 (ENSCPOG00000013115) #19	ENSCPOG00000005051 #20	ENSCPOG00000034740 #20	NR4A2 (ENSCPOG00000008225) #21	GPD2 (ENSCPOG00000000193) #22	GALNT5 (ENSCPOG00000000913) #23	CYTIP (ENSCPOG00000034296) #25	ACVR1C (ENSCPOG00000007111) #26	ACVR1 (ENSCPOG00000008791) #27	UPP2 (ENSCPOG00000003006) #28	CCDC148 (ENSCPOG00000004172) #29	PKP4 (ENSCPOG00000012130) #31	DAPL1 (ENSCPOG00000033811) #32	TANC1 (ENSCPOG00000008679) #33	WDSUB1 (ENSCPOG00000008696) #34	BAZ2B (ENSCPOG00000015233) #35	MARCHF7 (ENSCPOG00000003969) #36	CD302 (ENSCPOG00000003976) #37	LY75 (ENSCPOG00000008372) ##37	PLA2R1 (ENSCPOG00000008394) ##37
Naked mole-rat female	DUPLICATION
Naked mole-rat female	MODERN SPECIES	22	ENSHGLG00000037717	ENSHGLG00000047580	ENSHGLG00000036357	ARL6IP6 (ENSHGLG00000047268) #17	ENSHGLG00000041758	ENSHGLG00000041977	ENSHGLG00000034456	RPRM (ENSHGLG00000020667) #18	GALNT13 (ENSHGLG00000008663) #19	ENSHGLG00000041709	ENSHGLG00000048169 #20	ENSHGLG00000043622 ##24	ENSHGLG00000032785	ENSHGLG00000005496	ENSHGLG00000004699 #21	ENSHGLG00000004553 #22	ENSHGLG00000035939	ENSHGLG00000025302	GALNT5 (ENSHGLG00000040944) #23	ERMN (ENSHGLG00000044020) #24	CYTIP (ENSHGLG00000049755) #25	ACVR1C (ENSHGLG00000007777) #26	ACVR1 (ENSHGLG00000006379) #27	UPP2 (ENSHGLG00000004451) #28	CCDC148 (ENSHGLG00000004309) #29	ENSHGLG00000007575 #31	ENSHGLG00000004955	ENSHGLG00000009016 #32	ENSHGLG00000048160	TANC1 (ENSHGLG00000014465) #33	WDSUB1 (ENSHGLG00000014132) #34
Naked mole-rat female	MODERN SPECIES	31	ENSHGLG00000045770	ARHGEF6 (ENSHGLG00000004195)	ENSHGLG00000011055	GPR101 (ENSHGLG00000044397)	ENSHGLG00000033794	ENSHGLG00000041497	ENSHGLG00000010972	ENSHGLG00000046515	ENSHGLG00000040882	ENSHGLG00000007629	ENSHGLG00000033865	ENSHGLG00000034873	ENSHGLG00000034867	F9 (ENSHGLG00000050058)	MCF2 (ENSHGLG00000013161)	ENSHGLG00000009095 #22	ATP11C (ENSHGLG00000007759)	ENSHGLG00000047068	SOX3 (ENSHGLG00000039208)	ENSHGLG00000039059	ENSHGLG00000004407	ENSHGLG00000037583	ENSHGLG00000036529	ENSHGLG00000049672	ENSHGLG00000038876	ENSHGLG00000032750	ENSHGLG00000035566	SLITRK2 (ENSHGLG00000007935)	ENSHGLG00000045634	ENSHGLG00000040472	FMR1 (ENSHGLG00000000576)
Lagomorpha	ANCESTRAL SPECIES	12	ENSGT00530000063686.a.a ##7	ENSGT00940000157201 #9	ENSGT00390000012204 #10	ENSGT00940000154533.b.d #11	ENSGT00940000154714 #12	ENSGT00950000182837.b.b #13	ENSGT00940000157055 #14	ENSGT00940000155515.a.b.b #15	ENSGT00930000150980.a #16	ENSGT00950000185140	ENSGT00390000009987 #17	ENSGT00390000010523.c.b #18	ENSGT00940000158904 #19	ENSGT01080000257365.b.a.a.b.a #20	ENSGT00950000183038.a.b.b.b #21	ENSGT00390000001718 #22	ENSGT00940000159241 #23	ENSGT01090000260082.d.a.a.a.b #24	ENSGT00530000063734.a #25	ENSGT00940000158842 #26	ENSGT00940000160160 #27	ENSGT00940000161094 #28	ENSGT00940000153988.A #29	ENSGT00940000155773.b #31	ENSGT00940000154574.d #32	ENSGT00940000155655.B #33	ENSGT00940000157230 #34	ENSGT00940000155359 #35	ENSGT00530000063836.a #36	ENSGT01050000244842.a.b.a #37	ENSGT01050000244842.a.b.b.a.a.a ##37
Pika	MODERN SPECIES	393																GPD2 (ENSOPRG00000010713) #22
Rabbit	MODERN SPECIES	18	ENSOCUG00000035924	NEB (ENSOCUG00000017458) #11	ARL5A (ENSOCUG00000035346) #12	ENSOCUG00000000144 #13	STAM2 (ENSOCUG00000000344) #14	ENSOCUG00000013216 #15	ENSOCUG00000037766 #16	ENSOCUG00000013239 #16	ENSOCUG00000030282	ARL6IP6 (ENSOCUG00000013257) #17	RPRM (ENSOCUG00000001688) #18	GALNT13 (ENSOCUG00000017645) #19	KCNJ3 (ENSOCUG00000024206) #20	ENSOCUG00000013788	NR4A2 (ENSOCUG00000000784) #21	GPD2 (ENSOCUG00000009764) #22	ENSOCUG00000021063	GALNT5 (ENSOCUG00000009185) #23	ERMN (ENSOCUG00000009198) #24	CYTIP (ENSOCUG00000009200) #25	ACVR1C (ENSOCUG00000009208) #26	ENSOCUG00000032469	ENSOCUG00000039151	ACVR1 (ENSOCUG00000002439) #27	UPP2 (ENSOCUG00000008498) #28	ENSOCUG00000034761	ENSOCUG00000035971	ENSOCUG00000029444 #29	PKP4 (ENSOCUG00000013466) #31	ENSOCUG00000008620 #32	TANC1 (ENSOCUG00000015107) #33
Tree shrew	MODERN SPECIES	596																GPD2 (ENSTBEG00000014623) #22
Primates	ANCESTRAL SPECIES	13	ENSGT00530000063686.a.b #7	ENSGT00530000063686.a.a ##7	ENSGT00940000157201 #9	ENSGT00390000012204 #10	ENSGT00940000154533.b.d #11	ENSGT00940000154714 #12	ENSGT00950000182837.b.b #13	ENSGT00940000157055 #14	ENSGT00940000155515.a.b.b #15	ENSGT00930000150980.a #16	ENSGT00390000009987 #17	ENSGT00390000010523.c.b #18	ENSGT00940000158904 #19	ENSGT01080000257365.b.a.a.b.a #20	ENSGT00950000183038.a.b.b.b #21	ENSGT00390000001718 #22	ENSGT00940000159241 #23	ENSGT01090000260082.d.a.a.a.b #24	ENSGT00530000063734.a #25	ENSGT00940000158842 #26	ENSGT00940000160160 #27	ENSGT00940000161094 #28	ENSGT00940000153988.A #29	ENSGT00940000155773.b #31	ENSGT00940000154574.d #32	ENSGT00940000155655.B #33	ENSGT00940000157230 #34	ENSGT00940000155359 #35	ENSGT00530000063836.a #36	ENSGT01050000244842.a.b.a #37	ENSGT01050000244842.a.b.b.a.a.a ##37
Haplorrhini	ANCESTRAL SPECIES	10	ENSGT00530000063686.a.b #7	ENSGT00530000063686.a.a ##7	ENSGT00940000157201 #9	ENSGT00390000012204 #10	ENSGT00940000154533.b.d #11	ENSGT00940000154714.v #12	ENSGT00950000182837.b.b #13	ENSGT00940000157055 #14	ENSGT00940000155515.a.b.b #15	ENSGT00930000150980.a #16	ENSGT00390000009987 #17	ENSGT00390000010523.c.b #18	ENSGT00940000158904 #19	ENSGT01080000257365.b.a.a.b.a #20	ENSGT00950000183038.a.b.b.b #21	ENSGT00390000001718 #22	ENSGT00940000159241 #23	ENSGT01090000260082.d.a.a.a.b #24	ENSGT00530000063734.a #25	ENSGT00940000158842 #26	ENSGT00940000160160 #27	ENSGT00940000161094 #28	ENSGT00940000153988.A #29	ENSGT00940000155773.b #31	ENSGT00940000154574.d #32	ENSGT00940000155655.B #33	ENSGT00940000157230 #34	ENSGT00940000155359 #35	ENSGT00530000063836.a #36	ENSGT01050000244842.a.b.a #37	ENSGT01050000244842.a.b.b.a.a.a ##37
Simiiformes	DUPLICATION
Simiiformes	ANCESTRAL SPECIES																	ENSGT00390000001718.i #22
Platyrrhini	ANCESTRAL SPECIES	9	ENSGT00390000012204 #10	ENSGT00940000154533.b.d #11	ENSGT00940000154714.v #12	ENSGT00950000182837.b.b #13	ENSGT00940000157055 #14	ENSGT00620000089259	ENSGT00940000155515.a.b.b #15	ENSGT00930000150980.a #16	ENSGT00390000009987 #17	ENSGT00950000183077.a.a.a.a.b	ENSGT00390000010523.c.b #18	ENSGT00940000158904 #19	ENSGT00390000015797.d	ENSGT01080000257365.b.a.a.b.a #20	ENSGT00950000183038.a.b.b.b #21	ENSGT00390000001718.i #22	ENSGT00940000159241 #23	ENSGT01090000260082.d.a.a.a.b #24	ENSGT00530000063734.a #25	ENSGT00940000158842 #26	ENSGT00940000154191.i.a.s	ENSGT00940000160160 #27	ENSGT00940000161094 #28	ENSGT00940000153988.A #29	ENSGT00940000155773.b #31	ENSGT00940000154574.d #32	ENSGT00940000165460	ENSGT00940000155655.B #33	ENSGT00940000157230 #34	ENSGT00940000155359 #35	ENSGT00530000063836.a #36
Cebidae	ANCESTRAL SPECIES	11	ENSGT00390000012204 #10	ENSGT00940000154533.b.d #11	ENSGT00940000154714.v #12	ENSGT00950000182837.b.b #13	ENSGT00940000157055 #14	ENSGT00620000089259	ENSGT00940000155515.a.b.b #15	ENSGT00930000150980.a #16	ENSGT00390000009987 #17	ENSGT00950000183077.a.a.a.a.b	ENSGT00390000010523.c.b #18	ENSGT00940000158904 #19	ENSGT00390000015797.d	ENSGT01080000257365.b.a.a.b.a #20	ENSGT00950000183038.a.b.b.b #21	ENSGT00390000001718.i #22	ENSGT00940000159241 #23	ENSGT01090000260082.d.a.a.a.b #24	ENSGT00530000063734.a #25	ENSGT00940000158842 #26	ENSGT00940000154191.i.a.s	ENSGT00940000160160 #27	ENSGT00940000161094 #28	ENSGT00940000153988.A #29	ENSGT00940000155773.b #31	ENSGT00940000154574.d #32	ENSGT00940000165460	ENSGT00940000155655.B #33	ENSGT00940000157230 #34	ENSGT00940000155359 #35	ENSGT00530000063836.a #36
Marmoset	MODERN SPECIES	18	CACNB4 (ENSCJAG00000003326) #13	STAM2 (ENSCJAG00000044417) #14	ENSCJAG00000082252	ENSCJAG00000075153	ENSCJAG00000056419	FMNL2 (ENSCJAG00000015629) #15	PRPF40A (ENSCJAG00000015541) #16	ARL6IP6 (ENSCJAG00000061546) #17	RPRM (ENSCJAG00000046500) #18	ENSCJAG00000074891	GALNT13 (ENSCJAG00000015503) #19	ENSCJAG00000046815	KCNJ3 (ENSCJAG00000015490) #20	ENSCJAG00000078948	NR4A2 (ENSCJAG00000015464) #21	ENSCJAG00000015452 #22	GALNT5 (ENSCJAG00000015426) #23	ERMN (ENSCJAG00000077957) #24	CYTIP (ENSCJAG00000053299) #25	ACVR1C (ENSCJAG00000015385) #26	ACVR1 (ENSCJAG00000015359) #27	ENSCJAG00000062119	CCDC148 (ENSCJAG00000015325) #29	PKP4 (ENSCJAG00000015236) #31	DAPL1 (ENSCJAG00000039319) #32	ENSCJAG00000051811	TANC1 (ENSCJAG00000015159) #33	WDSUB1 (ENSCJAG00000015117) #34	BAZ2B (ENSCJAG00000015052) #35	MARCHF7 (ENSCJAG00000015023) #36	CD302 (ENSCJAG00000047546) #37
Cebidae_a	ANCESTRAL SPECIES	27	ENSGT00390000012204 #10	ENSGT00940000154533.b.d #11	ENSGT00940000154714.v #12	ENSGT00950000182837.b.b #13	ENSGT00940000157055 #14	ENSGT00620000089259	ENSGT00940000155515.a.b.b #15	ENSGT00930000150980.a #16	ENSGT00390000009987 #17	ENSGT00950000183077.a.a.a.a.b	ENSGT00390000010523.c.b #18	ENSGT00940000158904 #19	ENSGT00390000015797.d	ENSGT01080000257365.b.a.a.b.a #20	ENSGT00950000183038.a.b.b.b #21	ENSGT00390000001718.i #22	ENSGT00940000154966.l	ENSGT00940000159241 #23	ENSGT01090000260082.d.a.a.a.b #24	ENSGT00530000063734.a #25	ENSGT00940000158842 #26	ENSGT00940000154191.i.a.s	ENSGT00940000160160 #27	ENSGT00940000161094 #28	ENSGT00940000153988.A #29	ENSGT00940000155773.b #31	ENSGT00940000165460	ENSGT00940000155655.B #33	ENSGT00940000157230 #34	ENSGT00940000155359 #35	ENSGT00530000063836.a #36
Bolivian squirrel monkey	MODERN SPECIES	46	RIF1 (ENSSBOG00000029530) #10	NEB (ENSSBOG00000031622) #11	ARL5A (ENSSBOG00000034323) #12	CACNB4 (ENSSBOG00000025206) #13	ENSSBOG00000023639 ##30	ENSSBOG00000027242 #14	ENSSBOG00000023807	FMNL2 (ENSSBOG00000027176) #15	PRPF40A (ENSSBOG00000015435) #16	ARL6IP6 (ENSSBOG00000029584) #17	RPRM (ENSSBOG00000009917) #18	GALNT13 (ENSSBOG00000024917) #19	ENSSBOG00000030750	KCNJ3 (ENSSBOG00000023474) #20	NR4A2 (ENSSBOG00000021402) #21	ENSSBOG00000027281 #22	ENSSBOG00000023257	GALNT5 (ENSSBOG00000020422) #23	ERMN (ENSSBOG00000031955) #24	ENSSBOG00000028587	CYTIP (ENSSBOG00000025520) #25	ENSSBOG00000035700	ACVR1C (ENSSBOG00000030313) #26	ACVR1 (ENSSBOG00000025226) #27	ENSSBOG00000005244	UPP2 (ENSSBOG00000025379) #28	ENSSBOG00000018918	CCDC148 (ENSSBOG00000028768) #29	PKP4 (ENSSBOG00000035588) #31	ENSSBOG00000020626	TANC1 (ENSSBOG00000035294) #33
Capuchin	MODERN SPECIES	10															NR4A2 (ENSCCAG00000028864) #21	ENSCCAG00000013735 #22	ENSCCAG00000034104	GALNT5 (ENSCCAG00000017721) #23	ERMN (ENSCCAG00000018480) #24	CYTIP (ENSCCAG00000031950) #25	ACVR1C (ENSCCAG00000034982) #26	ACVR1 (ENSCCAG00000021519) #27	ENSCCAG00000029581	UPP2 (ENSCCAG00000020932) #28	CCDC148 (ENSCCAG00000034404) #29	PKP4 (ENSCCAG00000027888) #31	ENSCCAG00000034852	TANC1 (ENSCCAG00000034191) #33	WDSUB1 (ENSCCAG00000026210) #34	BAZ2B (ENSCCAG00000029234) #35	MARCHF7 (ENSCCAG00000032294) #36
Catarrhini	ANCESTRAL SPECIES		ENSGT00940000163365	ENSGT00940000164284	ENSGT00940000161929	ENSGT00940000162525	ENSGT00910000144582	ENSGT00940000165608	ENSGT00490000044430	ENSGT00940000163677.a.b.a.a.a.b.a	ENSGT00940000163774	ENSGT00940000163087	ENSGT00940000162376	ENSGT00940000161954.f	ENSGT00390000021477	ENSGT00940000161925	ENSGT00940000162794	ENSGT00390000001718.i #22	ENSGT00510000055233	ENSGT00940000163230.a.b	ENSGT00940000163230.a.a	ENSGT00940000164597	ENSGT00390000016349	ENSGT00940000162893	ENSGT00940000163064	ENSGT00940000162898	ENSGT00940000163909	ENSGT00940000163591	ENSGT00940000162284	ENSGT00940000163635	ENSGT00940000163220.b	ENSGT00940000163218	ENSGT00940000160411
Hominoidea	ANCESTRAL SPECIES		ENSGT00940000159953.B.a.b	ENSGT00940000163365	ENSGT00940000164284	ENSGT00940000161929	ENSGT00940000162525	ENSGT00910000144582	ENSGT00940000165608	ENSGT00490000044430	ENSGT00940000163774	ENSGT00940000163087	ENSGT00940000162376	ENSGT00940000161954.f	ENSGT00390000021477	ENSGT00940000161925	ENSGT00940000162794	ENSGT00390000001718.i #22	ENSGT00510000055233	ENSGT00940000163230.a.b	ENSGT00940000163230.a.a	ENSGT00940000164597	ENSGT00390000016349	ENSGT00940000162893	ENSGT00940000163064	ENSGT00940000162898	ENSGT00940000163909	ENSGT00940000163591	ENSGT00940000162284	ENSGT00940000163635	ENSGT00940000163220.b	ENSGT00940000163218	ENSGT00940000160411
Hominidae	ANCESTRAL SPECIES		ENSGT00940000159953.B.a.b	ENSGT00940000163365	ENSGT00940000164284	ENSGT00940000161929	ENSGT00940000162525	ENSGT00940000165608	ENSGT00490000044430	ENSGT00940000163774	ENSGT00940000163087	ENSGT00940000162376	ENSGT00940000161954.f	ENSGT00390000017871	ENSGT00390000021477	ENSGT00940000161925	ENSGT00940000162794	ENSGT00390000001718.i #22	ENSGT00510000055233	ENSGT00940000163230.a.b	ENSGT00940000163230.a.a	ENSGT00940000164597	ENSGT00390000016349	ENSGT00940000162893	ENSGT00940000163064	ENSGT00940000162898	ENSGT00940000163909	ENSGT00940000163591	ENSGT00940000162284	ENSGT00940000163635	ENSGT00940000163220.b	ENSGT00940000163218	ENSGT00940000160411
Homo/Pan/Gorilla group	ANCESTRAL SPECIES		ENSGT00940000159953.B.a.b	ENSGT00940000163365	ENSGT00940000164284	ENSGT00940000162525	ENSGT00940000165608	ENSGT00490000044430	ENSGT00940000163774	ENSGT00940000163087	ENSGT00940000162376	ENSGT00940000161954.f	ENSGT00390000017871.b	ENSGT00390000021477	ENSGT00940000161925	ENSGT00940000162794	ENSGT00390000007200.l	ENSGT00390000001718.i #22	ENSGT00510000055233	ENSGT00940000163230.a.b	ENSGT00940000163230.a.a	ENSGT00940000164597	ENSGT00390000016349	ENSGT00940000162893	ENSGT00940000163064	ENSGT00940000162898	ENSGT00940000163909	ENSGT00940000163591	ENSGT00940000162284	ENSGT00940000163635	ENSGT00940000163220.b	ENSGT00940000163218	ENSGT00910000148367
Homo/Pan group	ANCESTRAL SPECIES		ENSGT00940000159953.B.a.b	ENSGT00940000163365	ENSGT00940000164284	ENSGT00940000162525	ENSGT00940000165608	ENSGT00490000044430	ENSGT00940000163774	ENSGT00940000163087	ENSGT00940000162376	ENSGT00940000161954.f	ENSGT00390000017871.b	ENSGT00390000021477	ENSGT00940000161925	ENSGT00940000162794	ENSGT00390000007200.l	ENSGT00390000001718.i #22	ENSGT00510000055233	ENSGT00940000163230.a.b	ENSGT00940000163230.a.a	ENSGT00940000164597	ENSGT00390000016349	ENSGT00940000162893	ENSGT00940000163064	ENSGT00940000162898	ENSGT00940000163909	ENSGT00940000163591	ENSGT00940000162284	ENSGT00940000163635	ENSGT00940000163220.b	ENSGT00940000163218	ENSGT00940000160411
Pan	ANCESTRAL SPECIES	9	ENSGT00940000159953.B.a.b	ENSGT00940000163365	ENSGT00940000164284	ENSGT00940000162525	ENSGT00940000165608	ENSGT00490000044430	ENSGT00940000163774	ENSGT00940000163087	ENSGT00940000162376	ENSGT00940000161954.f	ENSGT00390000017871.b	ENSGT00390000021477	ENSGT00940000161925	ENSGT00940000162794	ENSGT00390000007200.l	ENSGT00390000001718.i #22	ENSGT00510000055233	ENSGT00940000163230.a.b	ENSGT00940000163230.a.a	ENSGT00940000164597	ENSGT00390000016349	ENSGT00940000162893	ENSGT00910000145073	ENSGT00940000162898	ENSGT00940000163909	ENSGT00940000163591	ENSGT00940000162284	ENSGT00940000163635	ENSGT00940000163220.b	ENSGT00940000163218	ENSGT00940000160411
Bonobo	MODERN SPECIES	10	ZNF264 (ENSPPAG00000040571)	DUXA (ENSPPAG00000039466)	ZIM3 (ENSPPAG00000034573)	PEG3 (ENSPPAG00000023992)	ZNF835 (ENSPPAG00000011355)	SMIM17 (ENSPPAG00000010024)	ENSPPAG00000041219	ZNF470 (ENSPPAG00000040887)	ZFP28 (ENSPPAG00000040191)	ZNF471 (ENSPPAG00000002078)	ENSPPAG00000027170	ZNF667 (ENSPPAG00000041319)	ZNF582 (ENSPPAG00000029277)	ENSPPAG00000037084	ENSPPAG00000019180	ENSPPAG00000033883 #22	EDDM13 (ENSPPAG00000028512)	ZSCAN5A (ENSPPAG00000035437)	ZSCAN5C (ENSPPAG00000027548)	ZSCAN5B (ENSPPAG00000009603)	GALP (ENSPPAG00000034903)	ZNF444 (ENSPPAG00000038804)	ENSPPAG00000004792	NLRP5 (ENSPPAG00000031725)	NLRP8 (ENSPPAG00000029544)	NLRP13 (ENSPPAG00000041403)	NLRP4 (ENSPPAG00000033000)	NLRP11 (ENSPPAG00000017134)	ENSPPAG00000035519	NLRP9 (ENSPPAG00000042520)	ENSPPAG00000040935
Chimpanzee	MODERN SPECIES	10	DUXA (ENSPTRG00000028871)	ZIM3 (ENSPTRG00000028872)	PEG3 (ENSPTRG00000023511)	ZNF835 (ENSPTRG00000024363)	SMIM17 (ENSPTRG00000044769)	ZNF71 (ENSPTRG00000022542)	ZNF470 (ENSPTRG00000051121)	ZFP28 (ENSPTRG00000023421)	ZNF471 (ENSPTRG00000028873)	ENSPTRG00000047670	ZNF667 (ENSPTRG00000011536)	ZNF583 (ENSPTRG00000023310)	ZNF582 (ENSPTRG00000011539)	ENSPTRG00000050066	ENSPTRG00000050381	ENSPTRG00000045738 #22	EDDM13 (ENSPTRG00000050856)	ZSCAN5A (ENSPTRG00000050956)	ZSCAN5C (ENSPTRG00000043651)	ZSCAN5B (ENSPTRG00000024093)	GALP (ENSPTRG00000022571)	ZNF444 (ENSPTRG00000011535)	ENSPTRG00000049425	NLRP5 (ENSPTRG00000011533)	NLRP8 (ENSPTRG00000011532)	NLRP13 (ENSPTRG00000011531)	NLRP4 (ENSPTRG00000011530)	NLRP11 (ENSPTRG00000011529)	NLRP9 (ENSPTRG00000011526)	EPN1 (ENSPTRG00000011524)	U2AF2 (ENSPTRG00000011523)
Gorilla	MODERN SPECIES	10	ZNF264 (ENSGGOG00000006173)	DUXA (ENSGGOG00000005650)	ZIM3 (ENSGGOG00000008206)	PEG3 (ENSGGOG00000005093)	SMIM17 (ENSGGOG00000042710)	ZNF71 (ENSGGOG00000014884)	ZNF470 (ENSGGOG00000037494)	ZFP28 (ENSGGOG00000011352)	ENSGGOG00000009780	ENSGGOG00000043593	ENSGGOG00000025600	ZNF667 (ENSGGOG00000000337)	ZNF583 (ENSGGOG00000014854)	ZNF582 (ENSGGOG00000003541)	ENSGGOG00000022308	ENSGGOG00000040203 #22	EDDM13 (ENSGGOG00000043046)	ZSCAN5A (ENSGGOG00000024785)	ZSCAN5C (ENSGGOG00000014089)	ENSGGOG00000027356	ENSGGOG00000014084	GALP (ENSGGOG00000014081)	ZNF444 (ENSGGOG00000027831)	ZNF787 (ENSGGOG00000026899)	NLRP5 (ENSGGOG00000004662)	NLRP8 (ENSGGOG00000038077)	NLRP13 (ENSGGOG00000008273)	NLRP4 (ENSGGOG00000016786)	NLRP11 (ENSGGOG00000016443)	ENSGGOG00000025780	NLRP9 (ENSGGOG00000023343)
Cercopithecidae	ANCESTRAL SPECIES	12	ENSGT00940000163365	ENSGT00940000164284	ENSGT00940000161929	ENSGT00940000162525	ENSGT00910000144582	ENSGT00940000165608	ENSGT00490000044430	ENSGT00940000163677.a.b.a.a.a.b.a	ENSGT00940000163774	ENSGT00940000163087	ENSGT00940000162376	ENSGT00940000161954.f	ENSGT00390000021477	ENSGT00940000161925	ENSGT00940000162794	ENSGT00390000001718.i #22	ENSGT00510000055233	ENSGT00940000163230.a.b	ENSGT00940000163230.a.a	ENSGT00940000164597	ENSGT00390000016349	ENSGT00940000162893	ENSGT00940000163064	ENSGT00940000162898	ENSGT00940000163909	ENSGT00940000163591	ENSGT00940000162284	ENSGT00940000163635	ENSGT00940000163220.a	ENSGT00940000163220.b.g	ENSGT00940000163218
Cercopithecinae	ANCESTRAL SPECIES	1	ENSGT00940000163365	ENSGT00940000164284	ENSGT00940000161929	ENSGT00940000162525	ENSGT00910000144582	ENSGT00940000165608	ENSGT00490000044430	ENSGT00940000163677.a.b.a.a.a.b.a	ENSGT00940000163774	ENSGT00940000163087	ENSGT00940000162376	ENSGT00940000161954.f	ENSGT00390000021477	ENSGT00940000161925	ENSGT00940000162794	ENSGT00390000001718.i #22	ENSGT00510000055233	ENSGT00940000163230.a.b	ENSGT00940000163230.a.a	ENSGT00940000164597	ENSGT00390000016349	ENSGT00940000162893	ENSGT00940000163064	ENSGT00940000162898	ENSGT00940000163909	ENSGT00940000163591	ENSGT00940000162284	ENSGT00940000163635	ENSGT00940000163220.a	ENSGT00940000163220.b.g	ENSGT00940000163218
Cercopithecinae_a	ANCESTRAL SPECIES	23	ENSGT00940000161619	ENSGT00940000159953.B.a.b	ENSGT00940000163365	ENSGT00940000164284	ENSGT00940000162525	ENSGT00940000163677.a.b.a.a.a.b.b	ENSGT00940000165608	ENSGT00490000044430	ENSGT00940000163774	ENSGT00940000163087	ENSGT00940000162376	ENSGT00940000161954.f	ENSGT00390000021477	ENSGT00940000161925	ENSGT00940000162794	ENSGT00390000001718.i #22	ENSGT00910000148414	ENSGT00510000055233	ENSGT00940000163230.a.b	ENSGT00940000163230.a.a	ENSGT00940000164597	ENSGT00390000016349	ENSGT00940000162893	ENSGT00940000163064	ENSGT00940000162898	ENSGT00940000163909	ENSGT00940000163591	ENSGT00940000162284	ENSGT00940000163635	ENSGT00940000163220.a	ENSGT00940000163220.b.g
Macaca	ANCESTRAL SPECIES	12	ENSGT00940000159953.B.a.b	ENSGT00940000163365	ENSGT00940000164284	ENSGT00940000161929	ENSGT00940000162525	ENSGT00940000163677.a.b.a.a.a.b.b	ENSGT00940000165608	ENSGT00490000044430	ENSGT00940000163774	ENSGT00940000163087	ENSGT00940000162376	ENSGT00940000161954.f	ENSGT00390000021477	ENSGT00940000161925	ENSGT00940000162794	ENSGT00390000001718.i #22	ENSGT00910000148414	ENSGT00510000055233	ENSGT00940000163230.a.b	ENSGT00940000164597	ENSGT00390000016349	ENSGT00940000162893	ENSGT00940000163064	ENSGT00940000162898	ENSGT00940000163909	ENSGT00940000163591	ENSGT00940000162284	ENSGT00940000163635	ENSGT00940000163220.a	ENSGT00940000163220.b.g	ENSGT00940000163218
Pig-tailed macaque	MODERN SPECIES	143	ENSMNEG00000038947	AURKC (ENSMNEG00000039984)	ZNF264 (ENSMNEG00000030964)	DUXA (ENSMNEG00000034185)	ZIM3 (ENSMNEG00000040897)	PEG3 (ENSMNEG00000036930)	SMIM17 (ENSMNEG00000039727)	ZNF71 (ENSMNEG00000026705)	ZNF470 (ENSMNEG00000038442)	ZFP28 (ENSMNEG00000044816)	ZNF471 (ENSMNEG00000037021)	ZNF667 (ENSMNEG00000044228)	ZNF583 (ENSMNEG00000030981)	ZNF582 (ENSMNEG00000028263)	ENSMNEG00000032373	ENSMNEG00000032854 #22	ENSMNEG00000001348	EDDM13 (ENSMNEG00000039729)	ZSCAN5A (ENSMNEG00000041679)	ZSCAN5C (ENSMNEG00000037381)	ZSCAN5B (ENSMNEG00000039908)	GALP (ENSMNEG00000012763)	ZNF444 (ENSMNEG00000028729)	ZNF787 (ENSMNEG00000040695)	NLRP5 (ENSMNEG00000036479)	NLRP8 (ENSMNEG00000035245)	NLRP13 (ENSMNEG00000041268)	NLRP4 (ENSMNEG00000044197)	NLRP11 (ENSMNEG00000029737)	ENSMNEG00000033972	ENSMNEG00000034268
Cercopithecinae_b	ANCESTRAL SPECIES	39	ENSGT00940000159953.B.a.b	ENSGT00940000163365	ENSGT00940000164284	ENSGT00940000162525	ENSGT00940000163677.a.b.a.a.a.b.b	ENSGT00940000165608	ENSGT00490000044430	ENSGT00940000163677.a.b.a.a.a.b.a	ENSGT00940000163774	ENSGT00940000163087	ENSGT00940000162376	ENSGT00940000161954.f	ENSGT00390000021477	ENSGT00940000161925	ENSGT00940000162794	ENSGT00390000001718.i #22	ENSGT00910000148414	ENSGT00510000055233	ENSGT00940000163230.a.b	ENSGT00940000163230.a.a	ENSGT00940000164597	ENSGT00390000016349	ENSGT01100000267023	ENSGT00940000162893	ENSGT00940000163064	ENSGT00940000162898	ENSGT00940000163909	ENSGT00940000163591	ENSGT00940000162284	ENSGT00940000163635	ENSGT00940000163220.a
Cercopithecinae_d	ANCESTRAL SPECIES	43	ENSGT00950000182890.D.c.b.a.b.a.b.x	ENSGT00940000159953.B.a.a	ENSGT00940000161619	ENSGT00940000159953.B.a.b	ENSGT00940000163365	ENSGT00940000164284	ENSGT00940000162525	ENSGT00490000044430	ENSGT00940000163774	ENSGT00940000163087	ENSGT00940000162376	ENSGT00940000161954.f	ENSGT00390000021477	ENSGT00940000161925	ENSGT00940000162794	ENSGT00390000001718.i #22	ENSGT00910000148414	ENSGT00510000055233	ENSGT00940000163230.a.b	ENSGT00940000163230.a.a	ENSGT00940000164597	ENSGT00390000016349	ENSGT01100000267023	ENSGT00940000162893	ENSGT00940000163064	ENSGT00940000162898	ENSGT00940000163909	ENSGT00940000163591	ENSGT00940000162284	ENSGT00940000163635	ENSGT00940000163220.a
Sooty mangabey	MODERN SPECIES	607	ENSCATG00000038493	ENSCATG00000035888	PPP2R5E (ENSCATG00000019906)	GPHB5 (ENSCATG00000045284)	RHOJ (ENSCATG00000035763)	ENSCATG00000030810	KCNH5 (ENSCATG00000042607)	ZNF71 (ENSCATG00000034845)	ZNF470 (ENSCATG00000042389)	ZFP28 (ENSCATG00000044000)	ZNF471 (ENSCATG00000040262)	ZNF667 (ENSCATG00000030847)	ZNF583 (ENSCATG00000033066)	ZNF582 (ENSCATG00000036892)	ENSCATG00000034610	ENSCATG00000042409 #22	ENSCATG00000039719	EDDM13 (ENSCATG00000037344)	ZSCAN5A (ENSCATG00000039708)	ZSCAN5C (ENSCATG00000040802)	ZSCAN5B (ENSCATG00000038324)	ENSCATG00000039723	ZNF444 (ENSCATG00000035089)	ZNF787 (ENSCATG00000034101)	NLRP5 (ENSCATG00000013095)	NLRP8 (ENSCATG00000037501)	NLRP13 (ENSCATG00000032693)	NLRP4 (ENSCATG00000024950)	NLRP11 (ENSCATG00000004890)	ENSCATG00000044514	ENSCATG00000029889
Drill	MODERN SPECIES	1225							ENSMLEG00000040715	SMIM17 (ENSMLEG00000032239)	ZNF71 (ENSMLEG00000007723)	ZNF470 (ENSMLEG00000034609)	ZFP28 (ENSMLEG00000041554)	ZNF471 (ENSMLEG00000044463)	ZNF667 (ENSMLEG00000036255)	ZNF583 (ENSMLEG00000007582)	ZNF582 (ENSMLEG00000030585)	ENSMLEG00000035380 #22	EDDM13 (ENSMLEG00000042817)	ZSCAN5A (ENSMLEG00000043375)	ZSCAN5C (ENSMLEG00000032490)	ZSCAN5B (ENSMLEG00000010543)	GALP (ENSMLEG00000039804)	ENSMLEG00000006662	NLRP5 (ENSMLEG00000026428)	NLRP8 (ENSMLEG00000036613)	NLRP13 (ENSMLEG00000037124)	NLRP4 (ENSMLEG00000038409)	NLRP11 (ENSMLEG00000044289)	ENSMLEG00000018794	ENSMLEG00000033753	NLRP9 (ENSMLEG00000036273)	EPN1 (ENSMLEG00000026771)
Simiiformes	ANCESTRAL SPECIES	15	ENSGT00530000063686.a.b #7	ENSGT00530000063686.a.a ##7	ENSGT00940000157201 #9	ENSGT00390000012204 #10	ENSGT00940000154533.b.d #11	ENSGT00940000154714.v #12	ENSGT00950000182837.b.b #13	ENSGT00940000157055 #14	ENSGT00940000155515.a.b.b #15	ENSGT00930000150980.a #16	ENSGT00390000009987 #17	ENSGT00390000010523.c.b #18	ENSGT00940000158904 #19	ENSGT01080000257365.b.a.a.b.a #20	ENSGT00950000183038.a.b.b.b #21	ENSGT00390000001718.j #22	ENSGT00940000159241 #23	ENSGT01090000260082.d.a.a.a.b #24	ENSGT00530000063734.a #25	ENSGT00940000158842 #26	ENSGT00940000160160 #27	ENSGT00940000161094 #28	ENSGT00940000153988.A #29	ENSGT00940000155773.b #31	ENSGT00940000154574.d #32	ENSGT00940000155655.B #33	ENSGT00940000157230 #34	ENSGT00940000155359 #35	ENSGT00530000063836.a #36	ENSGT01050000244842.a.b.a #37	ENSGT01050000244842.a.b.b.a.a.a ##37
Catarrhini	ANCESTRAL SPECIES	16	ENSGT00530000063686.a.a ##7	ENSGT00940000157201 #9	ENSGT00390000012204 #10	ENSGT00940000154533.b.d #11	ENSGT00940000154714.v #12	ENSGT00950000182837.b.b #13	ENSGT00940000157055 #14	ENSGT00620000089259	ENSGT00940000155515.a.b.b #15	ENSGT00930000150980.a #16	ENSGT00390000009987 #17	ENSGT00390000010523.c.b #18	ENSGT00940000158904 #19	ENSGT01080000257365.b.a.a.b.a #20	ENSGT00950000183038.a.b.b.b #21	ENSGT00390000001718.j #22	ENSGT00940000155179.c.b	ENSGT00940000159241 #23	ENSGT01090000260082.d.a.a.a.b #24	ENSGT00530000063734.a #25	ENSGT00940000158842 #26	ENSGT00940000160160 #27	ENSGT00940000161094 #28	ENSGT00940000153988.A #29	ENSGT00940000155773.b #31	ENSGT00940000154574.d #32	ENSGT00940000155655.B #33	ENSGT00940000157230 #34	ENSGT00940000155359 #35	ENSGT00950000183119.a.e.a.d.a.b	ENSGT00530000063836.a #36
Hominoidea	ANCESTRAL SPECIES	15	ENSGT00530000063686.a.a ##7	ENSGT00940000157201 #9	ENSGT00390000012204 #10	ENSGT00940000154533.b.d #11	ENSGT00940000154714.v #12	ENSGT00950000182837.b.b #13	ENSGT00940000157055 #14	ENSGT00620000089259	ENSGT00940000155515.a.b.b #15	ENSGT00930000150980.a #16	ENSGT00390000009987 #17	ENSGT00390000010523.c.b #18	ENSGT00940000158904 #19	ENSGT01080000257365.b.a.a.b.a #20	ENSGT00950000183038.a.b.b.b #21	ENSGT00390000001718.j #22	ENSGT00940000155179.c.b	ENSGT00940000159241 #23	ENSGT01090000260082.d.a.a.a.b #24	ENSGT00530000063734.a #25	ENSGT00940000158842 #26	ENSGT00940000160160 #27	ENSGT00940000161094 #28	ENSGT00940000153988.A #29	ENSGT00940000155773.b #31	ENSGT00940000154574.d #32	ENSGT00940000155655.B #33	ENSGT00940000157230 #34	ENSGT00940000155359 #35	ENSGT00950000183119.a.e.a.d.a.b	ENSGT00530000063836.a #36
Hominidae	ANCESTRAL SPECIES	17	ENSGT00530000063686.a.a ##7	ENSGT00940000157201 #9	ENSGT00390000012204 #10	ENSGT00940000154533.b.d #11	ENSGT00940000154714.v #12	ENSGT00950000182837.b.b #13	ENSGT00940000157055 #14	ENSGT00620000089259	ENSGT00940000155515.a.b.b #15	ENSGT00930000150980.a #16	ENSGT00390000009987 #17	ENSGT00390000010523.c.b #18	ENSGT00940000158904 #19	ENSGT01080000257365.b.a.a.b.a #20	ENSGT00950000183038.a.b.b.b #21	ENSGT00390000001718.j #22	ENSGT00940000155179.c.b	ENSGT00940000159241 #23	ENSGT01090000260082.d.a.a.a.b #24	ENSGT00530000063734.a #25	ENSGT00940000158842 #26	ENSGT00940000160160 #27	ENSGT00940000161094 #28	ENSGT00940000153988.A #29	ENSGT00940000155773.b #31	ENSGT00940000154574.d #32	ENSGT00940000155655.B #33	ENSGT00940000157230 #34	ENSGT00940000155359 #35	ENSGT00950000183119.a.e.a.d.a.b	ENSGT00530000063836.a #36
Homo/Pan/Gorilla group	ANCESTRAL SPECIES	14	ENSGT00530000063686.a.a ##7	ENSGT00940000157201 #9	ENSGT00390000012204 #10	ENSGT00940000154533.b.d #11	ENSGT00940000154714.v.f #12	ENSGT00950000182837.b.b #13	ENSGT00940000157055 #14	ENSGT00620000089259	ENSGT00940000155515.a.b.b #15	ENSGT00930000150980.a #16	ENSGT00390000009987 #17	ENSGT00390000010523.c.b #18	ENSGT00940000158904 #19	ENSGT01080000257365.b.a.a.b.a #20	ENSGT00950000183038.a.b.b.b #21	ENSGT00390000001718.j #22	ENSGT00940000155179.c.b	ENSGT00940000159241 #23	ENSGT01090000260082.d.a.a.a.b #24	ENSGT00530000063734.a #25	ENSGT00940000158842 #26	ENSGT00940000160160 #27	ENSGT00940000161094 #28	ENSGT00940000153988.A #29	ENSGT00940000155773.b #31	ENSGT00940000154574.d #32	ENSGT00940000155655.B #33	ENSGT00940000157230 #34	ENSGT00940000155359 #35	ENSGT00950000183119.a.e.a.d.a.b	ENSGT00530000063836.a #36
Gorilla	MODERN SPECIES	15	NMI (ENSGGOG00000013518) ##7	TNFAIP6 (ENSGGOG00000022498) #9	RIF1 (ENSGGOG00000040178) #10	NEB (ENSGGOG00000016489) #11	ENSGGOG00000002066 #12	CACNB4 (ENSGGOG00000038672) #13	STAM2 (ENSGGOG00000011441) #14	FMNL2 (ENSGGOG00000008600) #15	ENSGGOG00000028462	PRPF40A (ENSGGOG00000015592) #16	ARL6IP6 (ENSGGOG00000015604) #17	RPRM (ENSGGOG00000002162) #18	GALNT13 (ENSGGOG00000034959) #19	KCNJ3 (ENSGGOG00000022873) #20	NR4A2 (ENSGGOG00000011182) #21	GPD2 (ENSGGOG00000022735) #22	ENSGGOG00000027932	GALNT5 (ENSGGOG00000002475) #23	ERMN (ENSGGOG00000009944) #24	CYTIP (ENSGGOG00000006478) #25	ACVR1C (ENSGGOG00000039092) #26	ACVR1 (ENSGGOG00000002934) #27	UPP2 (ENSGGOG00000003425) #28	CCDC148 (ENSGGOG00000007731) #29	PKP4 (ENSGGOG00000001679) #31	ENSGGOG00000002893	ENSGGOG00000027595	TANC1 (ENSGGOG00000009465) #33	WDSUB1 (ENSGGOG00000015737) #34	BAZ2B (ENSGGOG00000016720) #35	ENSGGOG00000024112
Homo/Pan group	ANCESTRAL SPECIES	13	ENSGT00530000063686.a.a ##7	ENSGT00940000157201 #9	ENSGT00390000012204 #10	ENSGT00940000154533.b.d #11	ENSGT00940000154714.v.f #12	ENSGT00950000182837.b.b #13	ENSGT00940000157055 #14	ENSGT00620000089259	ENSGT00940000155515.a.b.b #15	ENSGT00930000150980.a #16	ENSGT00390000009987 #17	ENSGT00390000010523.c.b #18	ENSGT00940000158904 #19	ENSGT01080000257365.b.a.a.b.a #20	ENSGT00950000183038.a.b.b.b #21	ENSGT00390000001718.j #22	ENSGT00940000155179.c.b	ENSGT00940000159241 #23	ENSGT01090000260082.d.a.a.a.b #24	ENSGT00530000063734.a #25	ENSGT00940000158842 #26	ENSGT00940000160160 #27	ENSGT00940000161094 #28	ENSGT00940000153988.A #29	ENSGT00940000155773.b #31	ENSGT00940000154574.d #32	ENSGT00940000155655.B #33	ENSGT00940000157230 #34	ENSGT00940000155359 #35	ENSGT00950000183119.a.e.a.d.a.b	ENSGT00530000063836.a #36
Human	MODERN SPECIES	11	RBM43 (ENSG00000184898) #7	NMI (ENSG00000123609) ##7	TNFAIP6 (ENSG00000123610) #9	RIF1 (ENSG00000080345) #10	NEB (ENSG00000183091) #11	ARL5A (ENSG00000162980) #12	CACNB4 (ENSG00000182389) #13	STAM2 (ENSG00000115145) #14	FMNL2 (ENSG00000157827) #15	PRPF40A (ENSG00000196504) #16	ARL6IP6 (ENSG00000177917) #17	RPRM (ENSG00000177519) #18	GALNT13 (ENSG00000144278) #19	KCNJ3 (ENSG00000162989) #20	NR4A2 (ENSG00000153234) #21	GPD2 (ENSG00000115159) #22	GALNT5 (ENSG00000136542) #23	ERMN (ENSG00000136541) #24	CYTIP (ENSG00000115165) #25	ACVR1C (ENSG00000123612) #26	ACVR1 (ENSG00000115170) #27	UPP2 (ENSG00000007001) #28	CCDC148 (ENSG00000153237) #29	PKP4 (ENSG00000144283) #31	DAPL1 (ENSG00000163331) #32	TANC1 (ENSG00000115183) #33	WDSUB1 (ENSG00000196151) #34	BAZ2B (ENSG00000123636) #35	MARCHF7 (ENSG00000136536) #36	CD302 (ENSG00000241399) #37	LY75-CD302 (ENSG00000248672)
Pan	ANCESTRAL SPECIES	12	ENSGT00530000063686.a.a ##7	ENSGT00940000157201 #9	ENSGT00390000012204 #10	ENSGT00940000154533.b.d #11	ENSGT00940000154714.v.f #12	ENSGT00950000182837.b.b #13	ENSGT00940000157055 #14	ENSGT00620000089259	ENSGT00940000155515.a.b.b #15	ENSGT00930000150980.a #16	ENSGT00390000009987 #17	ENSGT00390000010523.c.b #18	ENSGT00940000158904 #19	ENSGT01080000257365.b.a.a.b.a #20	ENSGT00950000183038.a.b.b.b #21	ENSGT00390000001718.j #22	ENSGT00940000155179.c.b	ENSGT00940000159241 #23	ENSGT01090000260082.d.a.a.a.b #24	ENSGT00730000111097.f.a.b.b.b	ENSGT00530000063734.a #25	ENSGT00940000158842 #26	ENSGT00940000160160 #27	ENSGT00940000161094 #28	ENSGT00940000153988.A #29	ENSGT00940000155773.b #31	ENSGT00940000156425	ENSGT00940000154296.jb.a.f.b	ENSGT00940000155655.B #33	ENSGT00940000157230 #34	ENSGT00940000155359 #35
Bonobo	MODERN SPECIES	15	NMI (ENSPPAG00000034174) ##7	TNFAIP6 (ENSPPAG00000029874) #9	RIF1 (ENSPPAG00000023754) #10	ENSPPAG00000043206 #11	ARL5A (ENSPPAG00000033494) #12	CACNB4 (ENSPPAG00000028311) #13	STAM2 (ENSPPAG00000037568) #14	FMNL2 (ENSPPAG00000038903) #15	ENSPPAG00000009946	PRPF40A (ENSPPAG00000040033) #16	ARL6IP6 (ENSPPAG00000026309) #17	RPRM (ENSPPAG00000002667) #18	GALNT13 (ENSPPAG00000035152) #19	ENSPPAG00000014453 #20	NR4A2 (ENSPPAG00000031796) #21	GPD2 (ENSPPAG00000030269) #22	ENSPPAG00000039863	GALNT5 (ENSPPAG00000041176) #23	ERMN (ENSPPAG00000032661) #24	ENSPPAG00000038520	CYTIP (ENSPPAG00000032175) #25	ACVR1C (ENSPPAG00000035901) #26	ACVR1 (ENSPPAG00000037042) #27	UPP2 (ENSPPAG00000036723) #28	ENSPPAG00000030423 #29	PKP4 (ENSPPAG00000036834) #31	ENSPPAG00000036574	ENSPPAG00000031566	TANC1 (ENSPPAG00000043775) #33	WDSUB1 (ENSPPAG00000043849) #34	BAZ2B (ENSPPAG00000043827) #35
Chimpanzee	MODERN SPECIES	15	TNFAIP6 (ENSPTRG00000012533) #9	RIF1 (ENSPTRG00000012534) #10	NEB (ENSPTRG00000012536) #11	ENSPTRG00000039444	ARL5A (ENSPTRG00000012538) #12	CACNB4 (ENSPTRG00000047916) #13	STAM2 (ENSPTRG00000012540) #14	FMNL2 (ENSPTRG00000012541) #15	ENSPTRG00000048776	PRPF40A (ENSPTRG00000012543) #16	ARL6IP6 (ENSPTRG00000012544) #17	RPRM (ENSPTRG00000012545) #18	GALNT13 (ENSPTRG00000012546) #19	KCNJ3 (ENSPTRG00000012547) #20	NR4A2 (ENSPTRG00000012548) #21	GPD2 (ENSPTRG00000012549) #22	ENSPTRG00000043600	GALNT5 (ENSPTRG00000012550) #23	ERMN (ENSPTRG00000012551) #24	ENSPTRG00000050997	CYTIP (ENSPTRG00000012553) #25	ACVR1C (ENSPTRG00000012554) #26	ACVR1 (ENSPTRG00000012555) #27	UPP2 (ENSPTRG00000012556) #28	CCDC148 (ENSPTRG00000012557) #29	PKP4 (ENSPTRG00000012559) #31	DAPL1 (ENSPTRG00000012560)	ENSPTRG00000040409	TANC1 (ENSPTRG00000012561) #33	WDSUB1 (ENSPTRG00000012562) #34	BAZ2B (ENSPTRG00000012563) #35
Orangutan	MODERN SPECIES	15	RIF1 (ENSPPYG00000012846) #10	NEB (ENSPPYG00000012847) #11	ENSPPYG00000032033	ARL5A (ENSPPYG00000012848) #12	CACNB4 (ENSPPYG00000012849) #13	STAM2 (ENSPPYG00000012850) #14	FMNL2 (ENSPPYG00000012851) #15	ENSPPYG00000012852	PRPF40A (ENSPPYG00000012854) #16	ARL6IP6 (ENSPPYG00000012855) #17	RPRM (ENSPPYG00000012856) #18	GALNT13 (ENSPPYG00000012857) #19	ENSPPYG00000033294 #20	ENSPPYG00000032817	NR4A2 (ENSPPYG00000012859) #21	GPD2 (ENSPPYG00000041025) #22	GALNT5 (ENSPPYG00000012861) #23	ERMN (ENSPPYG00000012862) #24	CYTIP (ENSPPYG00000037528) #25	ACVR1C (ENSPPYG00000038725) #26	ACVR1 (ENSPPYG00000012865) #27	UPP2 (ENSPPYG00000012866) #28	CCDC148 (ENSPPYG00000029824) #29	PKP4 (ENSPPYG00000012867) #31	ENSPPYG00000033059	TANC1 (ENSPPYG00000012870) #33	BAZ2B (ENSPPYG00000012872) #35	MARCHF7 (ENSPPYG00000012873) #36	LY75 (ENSPPYG00000012874) ##37	PLA2R1 (ENSPPYG00000012876) ##37	ITGB6 (ENSPPYG00000012877)
Gibbon	MODERN SPECIES	7	RIF1 (ENSNLEG00000010955) #10	NEB (ENSNLEG00000011170) #11	ARL5A (ENSNLEG00000011191) #12	ENSNLEG00000030371	CACNB4 (ENSNLEG00000029444) #13	STAM2 (ENSNLEG00000011293) #14	ENSNLEG00000029701	ENSNLEG00000019196	FMNL2 (ENSNLEG00000026694) #15	PRPF40A (ENSNLEG00000011324) #16	ARL6IP6 (ENSNLEG00000011387) #17	RPRM (ENSNLEG00000019197) #18	GALNT13 (ENSNLEG00000011400) #19	KCNJ3 (ENSNLEG00000011437) #20	NR4A2 (ENSNLEG00000000629) #21	GPD2 (ENSNLEG00000000655) #22	ENSNLEG00000000733	GALNT5 (ENSNLEG00000000734) #23	ENSNLEG00000028994	ERMN (ENSNLEG00000027710) #24	CYTIP (ENSNLEG00000000772) #25	ACVR1C (ENSNLEG00000000817) #26	ACVR1 (ENSNLEG00000000837) #27	UPP2 (ENSNLEG00000000869) #28	CCDC148 (ENSNLEG00000000871) #29	PKP4 (ENSNLEG00000000892) #31	ENSNLEG00000000968	TANC1 (ENSNLEG00000000979) #33	WDSUB1 (ENSNLEG00000001031) #34	ENSNLEG00000035318	BAZ2B (ENSNLEG00000001067) #35
Cercopithecidae	ANCESTRAL SPECIES	13	ENSGT00530000063686.a.a ##7	ENSGT00940000157201 #9	ENSGT00390000012204 #10	ENSGT00940000154533.b.d #11	ENSGT00940000154714.v #12	ENSGT00950000182837.b.b #13	ENSGT00940000157055 #14	ENSGT00620000089259	ENSGT00940000155515.a.b.b #15	ENSGT00930000150980.a #16	ENSGT00390000009987 #17	ENSGT00390000010523.c.b #18	ENSGT00940000158904 #19	ENSGT01080000257365.b.a.a.b.a #20	ENSGT00950000183038.a.b.b.b #21	ENSGT00390000001718.j #22	ENSGT00940000155179.c.b	ENSGT00940000159241 #23	ENSGT01090000260082.d.a.a.a.b #24	ENSGT00530000063734.a #25	ENSGT00940000158842 #26	ENSGT00940000160160 #27	ENSGT00940000161094 #28	ENSGT00940000153988.A #29	ENSGT00940000155773.b #31	ENSGT00940000154574.d #32	ENSGT00940000155655.B #33	ENSGT00940000157230 #34	ENSGT00940000155359 #35	ENSGT00950000183119.a.e.a.d.a.b	ENSGT00530000063836.a #36
Cercopithecinae	ANCESTRAL SPECIES	11	ENSGT00910000147393	ENSGT00530000063686.a.a ##7	ENSGT00940000157201 #9	ENSGT00390000012204 #10	ENSGT00940000154533.b.d #11	ENSGT00940000154714.v #12	ENSGT00950000182837.b.b #13	ENSGT00940000157055 #14	ENSGT00940000155515.a.b.b #15	ENSGT00930000150980.a #16	ENSGT00390000009987 #17	ENSGT00390000010523.c.b #18	ENSGT00940000158904 #19	ENSGT01080000257365.b.a.a.b.a #20	ENSGT00950000183038.a.b.b.b #21	ENSGT00390000001718.j #22	ENSGT00940000155179.c.b	ENSGT00940000159241 #23	ENSGT01090000260082.d.a.a.a.b #24	ENSGT00530000063734.a #25	ENSGT00940000158842 #26	ENSGT00940000160160 #27	ENSGT00940000161094 #28	ENSGT00940000153988.A #29	ENSGT00940000155773.b #31	ENSGT00940000154574.d #32	ENSGT00940000155655.B #33	ENSGT00940000157230 #34	ENSGT00940000155359 #35	ENSGT00950000183119.a.e.a.d.a.b	ENSGT00530000063836.a #36
Vervet Monkey	MODERN SPECIES	1	RBM43 (ENSCSAG00000016105) #7	NMI (ENSCSAG00000016102) ##7	TNFAIP6 (ENSCSAG00000016095) #9	RIF1 (ENSCSAG00000016089) #10	NEB (ENSCSAG00000016065) #11	CACNB4 (ENSCSAG00000016028) #13	STAM2 (ENSCSAG00000016021) #14	ENSCSAG00000016011 #15	PRPF40A (ENSCSAG00000016002) #16	ARL6IP6 (ENSCSAG00000015990) #17	ENSCSAG00000015984	RPRM (ENSCSAG00000018646) #18	GALNT13 (ENSCSAG00000015977) #19	KCNJ3 (ENSCSAG00000015970) #20	NR4A2 (ENSCSAG00000015964) #21	GPD2 (ENSCSAG00000015958) #22	GALNT5 (ENSCSAG00000015950) #23	ERMN (ENSCSAG00000015935) #24	CYTIP (ENSCSAG00000015933) #25	ACVR1C (ENSCSAG00000015930) #26	ACVR1 (ENSCSAG00000015925) #27	UPP2 (ENSCSAG00000015921) #28	CCDC148 (ENSCSAG00000015915) #29	ENSCSAG00000018647	PKP4 (ENSCSAG00000015907) #31	DAPL1 (ENSCSAG00000015900) #32	TANC1 (ENSCSAG00000015889) #33	WDSUB1 (ENSCSAG00000015849) #34	BAZ2B (ENSCSAG00000015843) #35	MARCHF7 (ENSCSAG00000015835) #36	CD302 (ENSCSAG00000015829) #37
Cercopithecinae_a	ANCESTRAL SPECIES	16	ENSGT00940000157201 #9	ENSGT00390000012204 #10	ENSGT00940000154533.b.d #11	ENSGT00940000154714.v #12	ENSGT00950000182837.b.b #13	ENSGT00940000157055 #14	ENSGT00940000155515.a.b.b #15	ENSGT00930000150980.a #16	ENSGT00390000009987 #17	ENSGT00390000010523.c.b #18	ENSGT00940000158904 #19	ENSGT01080000257365.b.a.a.b.a #20	ENSGT00910000147369	ENSGT00940000154748.C.bb.a	ENSGT00950000183038.a.b.b.b #21	ENSGT00390000001718.j #22	ENSGT00940000155179.c.b	ENSGT00940000159241 #23	ENSGT01090000260082.d.a.a.a.b #24	ENSGT00530000063734.a #25	ENSGT00940000158842 #26	ENSGT00940000160160 #27	ENSGT00940000161094 #28	ENSGT00940000153988.A #29	ENSGT00940000155773.b #31	ENSGT00940000165460	ENSGT00940000154574.d #32	ENSGT00940000155655.B #33	ENSGT00940000157230 #34	ENSGT00940000164980.d	ENSGT00940000155359 #35
Macaca	ANCESTRAL SPECIES	15	ENSGT00940000157201 #9	ENSGT00390000012204 #10	ENSGT00940000154533.b.d #11	ENSGT00940000154714.v #12	ENSGT00950000182837.b.b #13	ENSGT00940000157055 #14	ENSGT00940000155515.a.b.b #15	ENSGT00930000150980.a #16	ENSGT00390000009987 #17	ENSGT00390000010523.c.b #18	ENSGT00940000158904 #19	ENSGT01080000257365.b.a.a.b.a #20	ENSGT00910000147369	ENSGT00940000154748.C.bb.a	ENSGT00950000183038.a.b.b.b #21	ENSGT00390000001718.j #22	ENSGT00940000166727.b	ENSGT00940000155179.d	ENSGT00940000159241 #23	ENSGT01090000260082.d.a.a.a.b #24	ENSGT00530000063734.a #25	ENSGT00940000158842 #26	ENSGT00940000160160 #27	ENSGT00940000161094 #28	ENSGT00940000153988.A #29	ENSGT00940000155773.b #31	ENSGT00580000082664.b.a.a	ENSGT00940000165460	ENSGT00940000154574.d #32	ENSGT00940000155655.B #33	ENSGT00940000157230 #34
Macaca_a	ANCESTRAL SPECIES	17	ENSGT00940000157201 #9	ENSGT00390000012204 #10	ENSGT00940000154533.b.d #11	ENSGT00940000154714.v #12	ENSGT00950000182837.b.b #13	ENSGT00940000157055 #14	ENSGT00940000155515.a.b.b #15	ENSGT00930000150980.a #16	ENSGT00390000009987 #17	ENSGT00390000010523.c.b #18	ENSGT00940000158904 #19	ENSGT01100000263539.b.a.a.a.b.b.a.b.b.a.a.a.a.a.a	ENSGT01080000257365.b.a.a.b.a #20	ENSGT00940000153375.lb.qb.a.a.a.a	ENSGT00950000183038.a.b.b.b #21	ENSGT00390000001718.j #22	ENSGT00940000155179.d	ENSGT00940000159241 #23	ENSGT01090000260082.d.a.a.a.b #24	ENSGT00530000063734.a #25	ENSGT00940000158842 #26	ENSGT00940000160160 #27	ENSGT00940000161627.a.a.a.a.b.a.a.b.a.a.a.a.a.a.a.b.a.a.b.a.a.b.b.b.a.b.a.a.a.a.b	ENSGT00940000161094 #28	ENSGT00940000153988.A #29	ENSGT00940000155773.b #31	ENSGT00580000082664.b.a.a	ENSGT00940000154574.d #32	ENSGT00940000155655.B #33	ENSGT00940000157230 #34	ENSGT00940000155359 #35
Rhesus	MODERN SPECIES	3	TNFAIP6 (ENSMMUG00000010927) #9	RIF1 (ENSMMUG00000008611) #10	ARL5A (ENSMMUG00000010521) #12	CACNB4 (ENSMMUG00000010526) #13	STAM2 (ENSMMUG00000010527) #14	FMNL2 (ENSMMUG00000031452) #15	PRPF40A (ENSMMUG00000010812) #16	ARL6IP6 (ENSMMUG00000062827) #17	ENSMMUG00000056430	RPRM (ENSMMUG00000061390) #18	GALNT13 (ENSMMUG00000055468) #19	ENSMMUG00000061400	KCNJ3 (ENSMMUG00000007096) #20	ENSMMUG00000058984	NR4A2 (ENSMMUG00000011607) #21	GPD2 (ENSMMUG00000004897) #22	ENSMMUG00000017716	GALNT5 (ENSMMUG00000017717) #23	ERMN (ENSMMUG00000038413) #24	CYTIP (ENSMMUG00000014176) #25	ACVR1C (ENSMMUG00000003707) #26	ENSMMUG00000058947	ACVR1 (ENSMMUG00000018497) #27	ENSMMUG00000058416	UPP2 (ENSMMUG00000011636) #28	ENSMMUG00000064768	ENSMMUG00000039873	CCDC148 (ENSMMUG00000011637) #29	PKP4 (ENSMMUG00000011638) #31	ENSMMUG00000006443	DAPL1 (ENSMMUG00000052818) #32
Crab-eating macaque	MODERN SPECIES	3	RIF1 (ENSMFAG00000032233) #10	NEB (ENSMFAG00000000188) #11	ENSMFAG00000056377 #12	CACNB4 (ENSMFAG00000044631) #13	STAM2 (ENSMFAG00000039480) #14	FMNL2 (ENSMFAG00000000995) #15	PRPF40A (ENSMFAG00000038480) #16	ARL6IP6 (ENSMFAG00000046021) #17	RPRM (ENSMFAG00000023756) #18	ENSMFAG00000065123	GALNT13 (ENSMFAG00000043213) #19	ENSMFAG00000050325	ENSMFAG00000043008 #20	ENSMFAG00000048164	NR4A2 (ENSMFAG00000036654) #21	GPD2 (ENSMFAG00000031606) #22	ENSMFAG00000059673	GALNT5 (ENSMFAG00000036566) #23	ERMN (ENSMFAG00000045944) #24	CYTIP (ENSMFAG00000043861) #25	ACVR1C (ENSMFAG00000042281) #26	ACVR1 (ENSMFAG00000042305) #27	ENSMFAG00000058914	UPP2 (ENSMFAG00000003209) #28	CCDC148 (ENSMFAG00000038269) #29	PKP4 (ENSMFAG00000008546) #31	ENSMFAG00000043045	ENSMFAG00000061795	DAPL1 (ENSMFAG00000029280) #32	TANC1 (ENSMFAG00000042358) #33	WDSUB1 (ENSMFAG00000023412) #34
Pig-tailed macaque	MODERN SPECIES	200											GALNT13 (ENSMNEG00000038018) #19	KCNJ3 (ENSMNEG00000042423) #20	ENSMNEG00000012049	ENSMNEG00000030470	NR4A2 (ENSMNEG00000030690) #21	GPD2 (ENSMNEG00000043830) #22	ENSMNEG00000003004	ENSMNEG00000039725	GALNT5 (ENSMNEG00000033880) #23	ERMN (ENSMNEG00000033854) #24	CYTIP (ENSMNEG00000030676) #25	ACVR1C (ENSMNEG00000008795) #26	ACVR1 (ENSMNEG00000037142) #27	UPP2 (ENSMNEG00000040493) #28	CCDC148 (ENSMNEG00000035200) #29	PKP4 (ENSMNEG00000033225) #31	ENSMNEG00000039564	ENSMNEG00000034113	TANC1 (ENSMNEG00000041870) #33	WDSUB1 (ENSMNEG00000043913) #34	ENSMNEG00000044017
Cercopithecinae_b	ANCESTRAL SPECIES	10	ENSGT00940000157201 #9	ENSGT00390000012204 #10	ENSGT00940000154533.b.d #11	ENSGT00940000154714.v #12	ENSGT00950000182837.b.b #13	ENSGT00940000157055 #14	ENSGT00940000155515.a.b.b #15	ENSGT00930000150980.a #16	ENSGT00390000009987 #17	ENSGT00390000010523.c.b #18	ENSGT00940000158904 #19	ENSGT01080000257365.b.a.a.b.a #20	ENSGT00910000147369	ENSGT00940000154748.C.bb.a	ENSGT00950000183038.a.b.b.b #21	ENSGT00390000001718.j #22	ENSGT00940000155179.c.b	ENSGT00940000159241 #23	ENSGT01090000260082.d.a.a.a.b #24	ENSGT00530000063734.a #25	ENSGT00940000158842 #26	ENSGT00940000160160 #27	ENSGT00940000161094 #28	ENSGT00940000153988.A #29	ENSGT00940000155773.b #31	ENSGT00940000165460	ENSGT00940000155655.B #33	ENSGT00940000157230 #34	ENSGT00940000164980.d	ENSGT00940000155359 #35	ENSGT00950000183119.a.e.a.d.a.b
Olive baboon	MODERN SPECIES	1	TNFAIP6 (ENSPANG00000021874) #9	RIF1 (ENSPANG00000008525) #10	NEB (ENSPANG00000005536) #11	ENSPANG00000009772 #12	CACNB4 (ENSPANG00000008398) #13	STAM2 (ENSPANG00000025044) #14	FMNL2 (ENSPANG00000008524) #15	PRPF40A (ENSPANG00000022095) #16	ARL6IP6 (ENSPANG00000018067) #17	RPRM (ENSPANG00000016888) #18	GALNT13 (ENSPANG00000016223) #19	ENSPANG00000046537	ENSPANG00000021079 #20	ENSPANG00000039703	NR4A2 (ENSPANG00000017851) #21	GPD2 (ENSPANG00000022223) #22	ENSPANG00000050199	ENSPANG00000045575	GALNT5 (ENSPANG00000015847) #23	ERMN (ENSPANG00000011571) #24	CYTIP (ENSPANG00000010255) #25	ACVR1C (ENSPANG00000025000) #26	ENSPANG00000039495	ACVR1 (ENSPANG00000005535) #27	ENSPANG00000043340	UPP2 (ENSPANG00000008397) #28	CCDC148 (ENSPANG00000009771) #29	PKP4 (ENSPANG00000023664) #31	ENSPANG00000045005	ENSPANG00000043147	ENSPANG00000030865
Cercopithecinae_d	ANCESTRAL SPECIES		ENSGT00940000157201 #9	ENSGT00390000012204 #10	ENSGT00940000154533.b.d #11	ENSGT00940000154714.v #12	ENSGT00950000182837.b.b #13	ENSGT00940000157055 #14	ENSGT00940000155515.a.b.b #15	ENSGT00930000150980.a #16	ENSGT00390000009987 #17	ENSGT00390000010523.c.b #18	ENSGT00940000158904 #19	ENSGT01080000257365.b.a.a.b.a #20	ENSGT00910000147369	ENSGT00940000154748.C.bb.a	ENSGT00950000183038.a.b.b.b #21	ENSGT00390000001718.j #22	ENSGT00940000155179.c.b	ENSGT00940000159241 #23	ENSGT01090000260082.d.a.a.a.b #24	ENSGT00530000063734.a #25	ENSGT00940000158842 #26	ENSGT00940000160160 #27	ENSGT00390000001958.t.a.f	ENSGT00940000161094 #28	ENSGT00940000153988.A #29	ENSGT00940000155773.b #31	ENSGT00940000165460	ENSGT00940000155655.B #33	ENSGT00940000157230 #34	ENSGT00940000164980.d	ENSGT00940000155359 #35
Sooty mangabey	MODERN SPECIES	480	RIF1 (ENSCATG00000033353) #10	NEB (ENSCATG00000031600) #11	ARL5A (ENSCATG00000029667) #12	CACNB4 (ENSCATG00000035449) #13	STAM2 (ENSCATG00000045298) #14	FMNL2 (ENSCATG00000030795) #15	ENSCATG00000039643	PRPF40A (ENSCATG00000043798) #16	ARL6IP6 (ENSCATG00000037038) #17	RPRM (ENSCATG00000009508) #18	GALNT13 (ENSCATG00000041414) #19	KCNJ3 (ENSCATG00000015555) #20	ENSCATG00000012230	ENSCATG00000039232	NR4A2 (ENSCATG00000031198) #21	GPD2 (ENSCATG00000027595) #22	ENSCATG00000041805	GALNT5 (ENSCATG00000043386) #23	ERMN (ENSCATG00000035512) #24	CYTIP (ENSCATG00000019139) #25	ACVR1C (ENSCATG00000006009) #26	ACVR1 (ENSCATG00000043568) #27	UPP2 (ENSCATG00000039609) #28	ENSCATG00000009759	CCDC148 (ENSCATG00000042205) #29	PKP4 (ENSCATG00000042780) #31	ENSCATG00000044407	TANC1 (ENSCATG00000036732) #33	WDSUB1 (ENSCATG00000031432) #34	BAZ2B (ENSCATG00000041093) #35	ENSCATG00000043533
Drill	MODERN SPECIES	161												KCNJ3 (ENSMLEG00000036640) #20	ENSMLEG00000002842	ENSMLEG00000041999	NR4A2 (ENSMLEG00000042988) #21	GPD2 (ENSMLEG00000037751) #22	ENSMLEG00000033420	GALNT5 (ENSMLEG00000041941) #23	ERMN (ENSMLEG00000037650) #24	CYTIP (ENSMLEG00000009650) #25	ACVR1C (ENSMLEG00000034616) #26	ACVR1 (ENSMLEG00000037343) #27	ENSMLEG00000041556	UPP2 (ENSMLEG00000006823) #28	CCDC148 (ENSMLEG00000040644) #29	PKP4 (ENSMLEG00000041827) #31	ENSMLEG00000042520	ENSMLEG00000027046	TANC1 (ENSMLEG00000040628) #33	WDSUB1 (ENSMLEG00000037762) #34	ENSMLEG00000027873
Rhinopithecus	ANCESTRAL SPECIES	621															ENSGT00950000183038.a.b.b.b #21	ENSGT00390000001718.j #22	ENSGT00940000166727.b	ENSGT00940000155179.c.b	ENSGT00940000159241 #23	ENSGT01090000260082.d.a.a.a.b #24
Black snub-nosed monkey	MODERN SPECIES	852															NR4A2 (ENSRBIG00000027636) #21	GPD2 (ENSRBIG00000031802) #22	ENSRBIG00000035393	GALNT5 (ENSRBIG00000032659) #23	ERMN (ENSRBIG00000041755) #24
Golden snub-nosed monkey	MODERN SPECIES	2830															NR4A2 (ENSRROG00000034749) #21	GPD2 (ENSRROG00000044379) #22	ENSRROG00000005532
Platyrrhini	ANCESTRAL SPECIES																	ENSGT00390000001718.j #22
Mas night monkey	MODERN SPECIES	1025										ENSANAG00000018049 #18	GALNT13 (ENSANAG00000034184) #19	ENSANAG00000024363	ENSANAG00000032096	KCNJ3 (ENSANAG00000024065) #20	NR4A2 (ENSANAG00000033869) #21	GPD2 (ENSANAG00000029065) #22	ENSANAG00000024064	GALNT5 (ENSANAG00000031318) #23	ERMN (ENSANAG00000024435) #24	CYTIP (ENSANAG00000021557) #25	ACVR1C (ENSANAG00000020309) #26	ENSANAG00000036181	ACVR1 (ENSANAG00000037191) #27	UPP2 (ENSANAG00000014254) #28	CCDC148 (ENSANAG00000030337) #29	PKP4 (ENSANAG00000030283) #31	ENSANAG00000027356	TANC1 (ENSANAG00000028931) #33	WDSUB1 (ENSANAG00000024850) #34	ENSANAG00000019367	BAZ2B (ENSANAG00000031484) #35
Tarsier	MODERN SPECIES	2916																GPD2 (ENSTSYG00000009366) #22
Strepsirrhini	ANCESTRAL SPECIES	10	ENSGT00530000063686.a.b #7	ENSGT00530000063686.a.a ##7	ENSGT00940000157201 #9	ENSGT00390000012204 #10	ENSGT00940000154533.b.d #11	ENSGT00940000154714 #12	ENSGT00950000182837.b.b #13	ENSGT00940000157055 #14	ENSGT00940000155515.a.b.b #15	ENSGT00930000150980.a #16	ENSGT00390000009987 #17	ENSGT00390000010523.c.b #18	ENSGT00940000158904 #19	ENSGT01080000257365.b.a.a.b.a #20	ENSGT00950000183038.a.b.b.b #21	ENSGT00390000001718 #22	ENSGT00940000159241 #23	ENSGT01090000260082.d.a.a.a.b #24	ENSGT00530000063734.a #25	ENSGT00940000158842 #26	ENSGT00940000160160 #27	ENSGT00940000161094 #28	ENSGT00940000153988.A #29	ENSGT00940000155773.b #31	ENSGT00940000154574.d #32	ENSGT00940000155655.B #33	ENSGT00940000157230 #34	ENSGT00940000155359 #35	ENSGT00530000063836.a #36	ENSGT01050000244842.a.b.a #37	ENSGT01050000244842.a.b.b.a.a.a ##37
Lemuriformes	ANCESTRAL SPECIES	5	ENSGT00530000063686.a.b #7	ENSGT00530000063686.a.a ##7	ENSGT00940000157201 #9	ENSGT00390000012204 #10	ENSGT00940000154533.b.d #11	ENSGT00940000154714 #12	ENSGT00950000182837.b.b #13	ENSGT00940000157055 #14	ENSGT00940000155515.a.b.b #15	ENSGT00930000150980.a #16	ENSGT00390000009987 #17	ENSGT00390000010523.c.b #18	ENSGT00940000158904 #19	ENSGT01080000257365.b.a.a.b.a #20	ENSGT00950000183038.a.b.b.b #21	ENSGT00390000001718 #22	ENSGT00940000159241 #23	ENSGT01090000260082.d.a.a.a.b #24	ENSGT00530000063734.a #25	ENSGT00940000158842 #26	ENSGT00940000160160 #27	ENSGT00940000161094 #28	ENSGT00940000153988.A #29	ENSGT00940000155773.b #31	ENSGT00940000154574.d #32	ENSGT00940000155655.B #33	ENSGT00940000157230 #34	ENSGT00940000155359 #35	ENSGT00530000063836.a #36	ENSGT01050000244842.a.b.a #37	ENSGT01050000244842.a.b.b.a.a.a ##37
Lemuriformes_a	ANCESTRAL SPECIES	81	ENSGT00940000157201 #9	ENSGT00390000012204 #10	ENSGT00940000154533.b.d #11	ENSGT00940000154714 #12	ENSGT00950000182837.b.b #13	ENSGT00940000157055 #14	ENSGT00390000008673.c.b	ENSGT00620000089259	ENSGT00940000155515.a.b.b #15	ENSGT00930000150980.a #16	ENSGT00390000009987 #17	ENSGT00390000010523.c.b #18	ENSGT00940000158904 #19	ENSGT01080000257365.b.a.a.b.a #20	ENSGT00950000183038.a.b.b.b #21	ENSGT00390000001718 #22	ENSGT00940000159241 #23	ENSGT01090000260082.d.a.a.a.b #24	ENSGT00530000063734.a #25	ENSGT00940000158842 #26	ENSGT00940000160160 #27	ENSGT00940000161094 #28	ENSGT00940000153988.A #29	ENSGT00940000155773.b #31	ENSGT00940000154574.d #32	ENSGT00940000165460	ENSGT00940000155655.B #33	ENSGT00940000157230 #34	ENSGT00940000155359 #35	ENSGT00530000063836.a #36	ENSGT01050000244842.a.b.a #37
Coquerels sifaka	MODERN SPECIES	207													ENSPCOG00000019736 #19	KCNJ3 (ENSPCOG00000023450) #20	NR4A2 (ENSPCOG00000023481) #21	GPD2 (ENSPCOG00000024425) #22	GALNT5 (ENSPCOG00000027803) #23	ERMN (ENSPCOG00000018793) #24	CYTIP (ENSPCOG00000015398) #25	ACVR1C (ENSPCOG00000023691) #26	ACVR1 (ENSPCOG00000020193) #27	ENSPCOG00000017879	UPP2 (ENSPCOG00000026361) #28	CCDC148 (ENSPCOG00000022812) #29	PKP4 (ENSPCOG00000027516) #31	DAPL1 (ENSPCOG00000023845) #32
Mouse lemur	MODERN SPECIES	30	RBM43 (ENSMICG00000002078) #7	NMI (ENSMICG00000046560) ##7	TNFAIP6 (ENSMICG00000045439) #9	RIF1 (ENSMICG00000046127) #10	NEB (ENSMICG00000007063) #11	ENSMICG00000015788 #12	CACNB4 (ENSMICG00000005867) #13	STAM2 (ENSMICG00000009382) #14	FMNL2 (ENSMICG00000017132) #15	PRPF40A (ENSMICG00000017146) #16	ARL6IP6 (ENSMICG00000042407) #17	RPRM (ENSMICG00000038767) #18	GALNT13 (ENSMICG00000013917) #19	KCNJ3 (ENSMICG00000005207) #20	NR4A2 (ENSMICG00000012076) #21	GPD2 (ENSMICG00000002816) #22	GALNT5 (ENSMICG00000008562) #23	ERMN (ENSMICG00000043032) #24	CYTIP (ENSMICG00000033074) #25	ACVR1C (ENSMICG00000008579) #26	ACVR1 (ENSMICG00000042942) #27	UPP2 (ENSMICG00000004835) #28	CCDC148 (ENSMICG00000004839) #29	PKP4 (ENSMICG00000016813) #31	DAPL1 (ENSMICG00000044514) #32	TANC1 (ENSMICG00000010481) #33	WDSUB1 (ENSMICG00000010495) #34	ENSMICG00000033517	BAZ2B (ENSMICG00000013967) #35	ENSMICG00000027936 #36	CD302 (ENSMICG00000042240) #37
Bushbaby	MODERN SPECIES	213									FMNL2 (ENSOGAG00000014332) #15	PRPF40A (ENSOGAG00000014343) #16	ENSOGAG00000025497	RPRM (ENSOGAG00000000247) #18	GALNT13 (ENSOGAG00000016208) #19	KCNJ3 (ENSOGAG00000005272) #20	NR4A2 (ENSOGAG00000009989) #21	GPD2 (ENSOGAG00000005169) #22	GALNT5 (ENSOGAG00000016594) #23	ERMN (ENSOGAG00000016598) #24	CYTIP (ENSOGAG00000016600) #25	ACVR1C (ENSOGAG00000011965) #26	ACVR1 (ENSOGAG00000011662) #27	UPP2 (ENSOGAG00000016439) #28	ENSOGAG00000034257	CCDC148 (ENSOGAG00000016443) #29	ENSOGAG00000027642	PKP4 (ENSOGAG00000016455) #31	DAPL1 (ENSOGAG00000016465) #32	TANC1 (ENSOGAG00000005652) #33	WDSUB1 (ENSOGAG00000012344) #34	BAZ2B (ENSOGAG00000012349) #35	MARCHF7 (ENSOGAG00000008675) #36
Laurasiatheria	ANCESTRAL SPECIES	12	ENSGT00530000063686.a.a ##7	ENSGT00940000157201 #9	ENSGT00390000012204 #10	ENSGT00940000154533.b.d #11	ENSGT00940000154714 #12	ENSGT00950000182837.b.b #13	ENSGT00940000157055 #14	ENSGT00940000155515.a.b.b #15	ENSGT00930000150980.a #16	ENSGT00950000185140	ENSGT00390000009987 #17	ENSGT00390000010523.c.b #18	ENSGT00940000158904 #19	ENSGT01080000257365.b.a.a.b.a #20	ENSGT00950000183038.a.b.b.b #21	ENSGT00390000001718 #22	ENSGT00940000159241 #23	ENSGT01090000260082.d.a.a.a.b #24	ENSGT00530000063734.a #25	ENSGT00940000158842 #26	ENSGT00940000160160 #27	ENSGT00940000161094 #28	ENSGT00940000153988.A #29	ENSGT00940000155773.b #31	ENSGT00940000154574.d #32	ENSGT00940000155655.B #33	ENSGT00940000157230 #34	ENSGT00940000155359 #35	ENSGT00530000063836.a #36	ENSGT01050000244842.a.b.a #37	ENSGT01050000244842.a.b.b.a.a.a ##37
Laurasiatheria_a	ANCESTRAL SPECIES	16	ENSGT01090000260806	ENSGT00940000157201 #9	ENSGT00390000012204 #10	ENSGT00940000154533.b.d #11	ENSGT00940000154714 #12	ENSGT00950000182837.b.b #13	ENSGT00940000157055 #14	ENSGT00940000155515.a.b.b #15	ENSGT00930000150980.a #16	ENSGT00950000185140	ENSGT00390000009987 #17	ENSGT00390000010523.c.b #18	ENSGT00940000158904 #19	ENSGT01080000257365.b.a.a.b.a #20	ENSGT00950000183038.a.b.b.b #21	ENSGT00390000001718 #22	ENSGT00940000159241 #23	ENSGT01090000260082.d.a.a.a.b #24	ENSGT00530000063734.a #25	ENSGT00940000158842 #26	ENSGT00940000160160 #27	ENSGT00940000161094 #28	ENSGT00940000153988.A #29	ENSGT00940000155773.b #31	ENSGT00940000154574.d #32	ENSGT00940000155655.B #33	ENSGT00940000157230 #34	ENSGT00940000155359 #35	ENSGT00530000063836.a #36	ENSGT01050000244842.a.b.a #37	ENSGT01050000244842.a.b.b.a.a.a ##37
Artiodactyla	ANCESTRAL SPECIES	13	ENSGT00530000063686.a.a ##7	ENSGT01090000260806	ENSGT00940000157201 #9	ENSGT00390000012204 #10	ENSGT00940000154533.b.d #11	ENSGT00940000154714 #12	ENSGT00950000182837.b.b #13	ENSGT00940000157055 #14	ENSGT00940000155515.a.b.b.l #15	ENSGT00930000150980.a #16	ENSGT00390000009987 #17	ENSGT00390000010523.c.b #18	ENSGT00940000158904 #19	ENSGT01080000257365.b.a.a.b.a #20	ENSGT00950000183038.a.b.b.b #21	ENSGT00390000001718 #22	ENSGT00940000159241 #23	ENSGT01090000260082.d.a.a.a.b #24	ENSGT00530000063734.a #25	ENSGT00940000158842 #26	ENSGT00940000160160 #27	ENSGT00940000161094 #28	ENSGT00940000153988.A #29	ENSGT00940000155773.b #31	ENSGT00940000154574.d #32	ENSGT00940000155655.B #33	ENSGT00940000157230 #34	ENSGT00940000155359 #35	ENSGT00530000063836.a #36	ENSGT01050000244842.a.b.a #37	ENSGT01050000244842.a.b.b.a.a.a ##37
Artiodactyla_a	ANCESTRAL SPECIES	13	ENSGT00530000063686.a.b #7	ENSGT00530000063686.a.a ##7	ENSGT00940000157201 #9	ENSGT00390000012204 #10	ENSGT00940000154533.b.d #11	ENSGT00940000154714 #12	ENSGT00950000182837.b.b #13	ENSGT00940000157055 #14	ENSGT00940000155515.a.b.b.l #15	ENSGT00930000150980.a #16	ENSGT00390000009987 #17	ENSGT00390000010523.c.b #18	ENSGT00940000158904 #19	ENSGT01080000257365.b.a.a.b.a #20	ENSGT00950000183038.a.b.b.b #21	ENSGT00390000001718 #22	ENSGT00940000159241 #23	ENSGT01090000260082.d.a.a.a.b #24	ENSGT00530000063734.a #25	ENSGT00940000158842 #26	ENSGT00940000160160 #27	ENSGT00940000161094 #28	ENSGT00940000153988.A #29	ENSGT00940000155773.b #31	ENSGT00940000154574.d #32	ENSGT00940000155655.B #33	ENSGT00940000157230 #34	ENSGT00940000155359 #35	ENSGT00530000063836.a #36	ENSGT01050000244842.a.b.a #37	ENSGT01050000244842.a.b.b.a.a.a ##37
Artiodactyla_b	ANCESTRAL SPECIES	12	ENSGT00530000063686.a.b #7	ENSGT00530000063686.a.a ##7	ENSGT00940000157201 #9	ENSGT00390000012204 #10	ENSGT00940000154533.b.d #11	ENSGT00940000154714 #12	ENSGT00950000182837.b.b #13	ENSGT00940000157055 #14	ENSGT00940000155515.a.b.b.l #15	ENSGT00930000150980.a #16	ENSGT00390000009987 #17	ENSGT00390000010523.c.b #18	ENSGT00940000158904 #19	ENSGT01080000257365.b.a.a.b.a #20	ENSGT00950000183038.a.b.b.b #21	ENSGT00390000001718 #22	ENSGT00940000159241 #23	ENSGT01090000260082.d.a.a.a.b #24	ENSGT00530000063734.a #25	ENSGT00940000158842 #26	ENSGT00940000160160 #27	ENSGT00940000161094 #28	ENSGT00940000153988.A #29	ENSGT00940000155773.b #31	ENSGT00940000154574.d #32	ENSGT00940000155655.B #33	ENSGT00940000157230 #34	ENSGT00940000155359 #35	ENSGT00530000063836.a #36	ENSGT01050000244842.a.b.a #37	ENSGT01050000244842.a.b.b.a.a.a ##37
Cetacea	ANCESTRAL SPECIES	14	ENSGT00530000063686.a.b #7	ENSGT00530000063686.a.a ##7	ENSGT00940000157201 #9	ENSGT00390000012204 #10	ENSGT00940000154533.b.d #11	ENSGT00940000154714 #12	ENSGT00950000182837.b.b #13	ENSGT00940000157055 #14	ENSGT00940000155515.a.b.b.l #15	ENSGT00930000150980.a #16	ENSGT00390000009987 #17	ENSGT00390000010523.c.b #18	ENSGT00940000158904 #19	ENSGT01080000257365.b.a.a.b.a #20	ENSGT00950000183038.a.b.b.b #21	ENSGT00390000001718 #22	ENSGT00940000159241 #23	ENSGT01090000260082.d.a.a.a.b #24	ENSGT00530000063734.a #25	ENSGT00940000158842 #26	ENSGT00940000160160 #27	ENSGT00940000161094 #28	ENSGT00940000153988.A #29	ENSGT00940000155773.b #31	ENSGT00940000154574.d #32	ENSGT00940000155655.B #33	ENSGT00940000157230 #34	ENSGT00940000155359 #35	ENSGT00530000063836.a #36	ENSGT01050000244842.a.b.a #37	ENSGT01050000244842.a.b.b.a.a.a ##37
Odontoceti	ANCESTRAL SPECIES	13	ENSGT00530000063686.a.b #7	ENSGT00530000063686.a.a ##7	ENSGT00940000157201 #9	ENSGT00390000012204 #10	ENSGT00940000154533.b.d #11	ENSGT00940000154714 #12	ENSGT00950000182837.b.b #13	ENSGT00940000157055 #14	ENSGT00940000155515.a.b.b.l #15	ENSGT00930000150980.a #16	ENSGT00390000009987 #17	ENSGT00390000010523.c.b #18	ENSGT00940000158904 #19	ENSGT01080000257365.b.a.a.b.a #20	ENSGT00950000183038.a.b.b.b #21	ENSGT00390000001718 #22	ENSGT00940000159241 #23	ENSGT01090000260082.d.a.a.a.b #24	ENSGT00530000063734.a #25	ENSGT00940000158842 #26	ENSGT00940000160160 #27	ENSGT00940000161094 #28	ENSGT00940000153988.A #29	ENSGT00940000155773.b #31	ENSGT00940000154574.d #32	ENSGT00940000155655.B #33	ENSGT00940000157230 #34	ENSGT00940000155359 #35	ENSGT00530000063836.a #36	ENSGT01050000244842.a.b.a #37	ENSGT01050000244842.a.b.b.a.a.a ##37
Odontoceti_a	ANCESTRAL SPECIES	10	ENSGT00530000063686.a.b #7	ENSGT00530000063686.a.a ##7	ENSGT00940000157201 #9	ENSGT00390000012204 #10	ENSGT00940000154533.b.d #11	ENSGT00940000154714 #12	ENSGT00950000182837.b.b #13	ENSGT00940000157055 #14	ENSGT00940000155515.a.b.b.l #15	ENSGT00930000150980.a #16	ENSGT00390000009987.m #17	ENSGT00390000010523.c.b #18	ENSGT00940000158904 #19	ENSGT01080000257365.b.a.a.b.a #20	ENSGT00950000183038.a.b.b.b #21	ENSGT00390000001718 #22	ENSGT00940000159241 #23	ENSGT01090000260082.d.a.a.a.b #24	ENSGT00530000063734.a #25	ENSGT00940000158842 #26	ENSGT00940000160160 #27	ENSGT00940000161094 #28	ENSGT00940000153988.A #29	ENSGT00940000155773.b #31	ENSGT00940000154574.d #32	ENSGT00940000155655.B #33	ENSGT00940000157230 #34	ENSGT00940000155359 #35	ENSGT00390000009819.a.b.a.a.a.a.a	ENSGT00530000063836.a #36	ENSGT01050000244842.a.b.a #37
Odontoceti_b	ANCESTRAL SPECIES	12	ENSGT00940000157201 #9	ENSGT00390000008496.j.b.a	ENSGT00390000012204 #10	ENSGT00940000154533.b.d #11	ENSGT00940000154714 #12	ENSGT00950000182837.b.b #13	ENSGT00940000157055 #14	ENSGT00940000155515.a.b.b.l #15	ENSGT00930000150980.a #16	ENSGT00390000009987.m #17	ENSGT00390000010523.c.b #18	ENSGT00940000158904 #19	ENSGT01080000257365.b.a.a.b.a #20	ENSGT00950000182878.b.a.c.a.a.b.o.a.a.a.a	ENSGT00950000183038.a.b.b.b #21	ENSGT00390000001718 #22	ENSGT00940000159241 #23	ENSGT01090000260082.d.a.a.a.b #24	ENSGT00530000063734.a #25	ENSGT00940000158842 #26	ENSGT00940000160160 #27	ENSGT00940000161094 #28	ENSGT00940000153988.A #29	ENSGT00940000155773.b #31	ENSGT00940000154574.d #32	ENSGT00940000155655.B #33	ENSGT00940000157230 #34	ENSGT00940000155359 #35	ENSGT00390000009819.a.b.a.a.a.a.a	ENSGT00530000063836.a #36	ENSGT01050000244842.a.b.a #37
Monodontidae	ANCESTRAL SPECIES	10	ENSGT00940000157201 #9	ENSGT00390000008496.j.b.a	ENSGT00390000012204 #10	ENSGT00940000154533.b.d #11	ENSGT00940000154714 #12	ENSGT00950000182837.b.b #13	ENSGT00940000157055 #14	ENSGT00940000155515.a.b.b.l #15	ENSGT00930000150980.a #16	ENSGT00390000009987.m #17	ENSGT00390000010523.c.b #18	ENSGT00940000158904 #19	ENSGT01080000257365.b.a.a.b.a #20	ENSGT00950000182878.b.a.c.a.a.b.o.a.a.a.a	ENSGT00950000183038.a.b.b.b #21	ENSGT00390000001718 #22	ENSGT00940000159241 #23	ENSGT01090000260082.d.a.a.a.b #24	ENSGT00530000063734.a #25	ENSGT00940000158842 #26	ENSGT00940000160160 #27	ENSGT00940000161094 #28	ENSGT00940000153988.A #29	ENSGT00940000155773.b #31	ENSGT00520000055616.a.n.a	ENSGT00940000154574.d #32	ENSGT00940000155655.B #33	ENSGT00940000157230 #34	ENSGT00940000155359 #35	ENSGT00530000063836.a #36	ENSGT01050000244842.a.b.a #37
Beluga whale	MODERN SPECIES	84	TNFAIP6 (ENSDLEG00000018296) #9	RIF1 (ENSDLEG00000018312) #10	NEB (ENSDLEG00000018861) #11	ARL5A (ENSDLEG00000021351) #12	CACNB4 (ENSDLEG00000021384) #13	STAM2 (ENSDLEG00000021549) #14	FMNL2 (ENSDLEG00000021565) #15	PRPF40A (ENSDLEG00000021630) #16	ARL6IP6 (ENSDLEG00000021640) #17	ENSDLEG00000021642	RPRM (ENSDLEG00000021644) #18	GALNT13 (ENSDLEG00000021650) #19	KCNJ3 (ENSDLEG00000021658) #20	ENSDLEG00000021665	NR4A2 (ENSDLEG00000021668) #21	GPD2 (ENSDLEG00000021674) #22	GALNT5 (ENSDLEG00000021685) #23	ERMN (ENSDLEG00000021690) #24	CYTIP (ENSDLEG00000021694) #25	ACVR1C (ENSDLEG00000021698) #26	ACVR1 (ENSDLEG00000021704) #27	UPP2 (ENSDLEG00000021711) #28	CCDC148 (ENSDLEG00000021715) #29	PKP4 (ENSDLEG00000021722) #31	ENSDLEG00000021727	DAPL1 (ENSDLEG00000021730) #32	TANC1 (ENSDLEG00000021758) #33	WDSUB1 (ENSDLEG00000021808) #34	BAZ2B (ENSDLEG00000021825) #35	ENSDLEG00000021834	ENSDLEG00000021836
Narwhal	MODERN SPECIES	302	TNFAIP6 (ENSMMNG00015010527) #9	ENSMMNG00015010504	RIF1 (ENSMMNG00015010377) #10	NEB (ENSMMNG00015010017) #11	ARL5A (ENSMMNG00015009864) #12	CACNB4 (ENSMMNG00015009337) #13	STAM2 (ENSMMNG00015009058) #14	FMNL2 (ENSMMNG00015009039) #15	PRPF40A (ENSMMNG00015008999) #16	ARL6IP6 (ENSMMNG00015008975) #17	RPRM (ENSMMNG00015008967) #18	GALNT13 (ENSMMNG00015008929) #19	KCNJ3 (ENSMMNG00015008897) #20	ENSMMNG00015008871	NR4A2 (ENSMMNG00015008859) #21	GPD2 (ENSMMNG00015008838) #22	ENSMMNG00015008821	GALNT5 (ENSMMNG00015008803) #23	ERMN (ENSMMNG00015008792) #24	CYTIP (ENSMMNG00015008775) #25	ACVR1C (ENSMMNG00015008729) #26	ACVR1 (ENSMMNG00015008667) #27	UPP2 (ENSMMNG00015008638) #28	ENSMMNG00015008615	CCDC148 (ENSMMNG00015008584) #29	PKP4 (ENSMMNG00015008535) #31	ENSMMNG00015008509	DAPL1 (ENSMMNG00015008500) #32	TANC1 (ENSMMNG00015008409) #33	WDSUB1 (ENSMMNG00015008343) #34	BAZ2B (ENSMMNG00015008164) #35
Vaquita	MODERN SPECIES	18	ENSPSNG00000022185	RIF1 (ENSPSNG00000022170) #10	NEB (ENSPSNG00000012803) #11	ARL5A (ENSPSNG00000009575) #12	CACNB4 (ENSPSNG00000007389) #13	STAM2 (ENSPSNG00000006220) #14	FMNL2 (ENSPSNG00000006149) #15	PRPF40A (ENSPSNG00000006077) #16	ENSPSNG00000006041 #17	RPRM (ENSPSNG00000006016) #18	GALNT13 (ENSPSNG00000005799) #19	ENSPSNG00000005737 #20	ENSPSNG00000005693	ENSPSNG00000005659	NR4A2 (ENSPSNG00000005588) #21	GPD2 (ENSPSNG00000005483) #22	GALNT5 (ENSPSNG00000005387) #23	ERMN (ENSPSNG00000005348) #24	CYTIP (ENSPSNG00000005288) #25	ACVR1C (ENSPSNG00000005156) #26	ACVR1 (ENSPSNG00000005073) #27	UPP2 (ENSPSNG00000005044) #28	CCDC148 (ENSPSNG00000004963) #29	PKP4 (ENSPSNG00000004809) #31	DAPL1 (ENSPSNG00000004726) #32	TANC1 (ENSPSNG00000004634) #33	WDSUB1 (ENSPSNG00000004541) #34	ENSPSNG00000004495	ENSPSNG00000004480	BAZ2B (ENSPSNG00000004205) #35	MARCHF7 (ENSPSNG00000004066) #36
Dolphin	MODERN SPECIES	1128															NR4A2 (ENSTTRG00000005740) #21	GPD2 (ENSTTRG00000005741) #22
Sperm whale	MODERN SPECIES	11	TNFAIP6 (ENSPCTG00005001643) #9	RIF1 (ENSPCTG00005001703) #10	NEB (ENSPCTG00005002027) #11	ARL5A (ENSPCTG00005002661) #12	CACNB4 (ENSPCTG00005003013) #13	STAM2 (ENSPCTG00005007069) #14	FMNL2 (ENSPCTG00005007168) #15	PRPF40A (ENSPCTG00005007224) #16	ARL6IP6 (ENSPCTG00005007339) #17	RPRM (ENSPCTG00005007360) #18	GALNT13 (ENSPCTG00005007385) #19	ENSPCTG00005007408 #20	ENSPCTG00005007421	ENSPCTG00005007470	NR4A2 (ENSPCTG00005007489) #21	GPD2 (ENSPCTG00005007599) #22	GALNT5 (ENSPCTG00005007657) #23	ERMN (ENSPCTG00005007685) #24	CYTIP (ENSPCTG00005007718) #25	ACVR1C (ENSPCTG00005007770) #26	ENSPCTG00005008058	ACVR1 (ENSPCTG00005008074) #27	UPP2 (ENSPCTG00005008111) #28	CCDC148 (ENSPCTG00005008138) #29	PKP4 (ENSPCTG00005008256) #31	DAPL1 (ENSPCTG00005008316) #32	TANC1 (ENSPCTG00005008361) #33	WDSUB1 (ENSPCTG00005008448) #34	BAZ2B (ENSPCTG00005008599) #35	MARCH7 (ENSPCTG00005008848) #36	CD302 (ENSPCTG00005008956) #37
Blue whale	MODERN SPECIES	18	TNFAIP6 (ENSBMSG00010002386) #9	ENSBMSG00010002399	RIF1 (ENSBMSG00010002436) #10	NEB (ENSBMSG00010002643) #11	ARL5A (ENSBMSG00010002880) #12	CACNB4 (ENSBMSG00010003258) #13	STAM2 (ENSBMSG00010005180) #14	FMNL2 (ENSBMSG00010005238) #15	PRPF40A (ENSBMSG00010005288) #16	ARL6IP6 (ENSBMSG00010005306) #17	RPRM (ENSBMSG00010005320) #18	GALNT13 (ENSBMSG00010005342) #19	ENSBMSG00010005366	ENSBMSG00010005381 #20	NR4A2 (ENSBMSG00010005418) #21	GPD2 (ENSBMSG00010005434) #22	ENSBMSG00010005448	GALNT5 (ENSBMSG00010005462) #23	ERMN (ENSBMSG00010005478) #24	CYTIP (ENSBMSG00010005488) #25	ACVR1C (ENSBMSG00010005515) #26	ACVR1 (ENSBMSG00010005582) #27	UPP2 (ENSBMSG00010005599) #28	CCDC148 (ENSBMSG00010005632) #29	PKP4 (ENSBMSG00010005675) #31	DAPL1 (ENSBMSG00010005696) #32	TANC1 (ENSBMSG00010005741) #33	ENSBMSG00010011216	WDSUB1 (ENSBMSG00010011260) #34	ENSBMSG00010011285 #35	ENSBMSG00010011302 #35
Pecora	ANCESTRAL SPECIES	24	ENSGT00530000063686.a.a ##7	ENSGT00940000157201 #9	ENSGT00390000012204 #10	ENSGT00940000154533.b.d #11	ENSGT00940000154714 #12	ENSGT00950000182837.b.b #13	ENSGT00940000157055 #14	ENSGT00940000155515.a.b.b.l #15	ENSGT00930000150980.a #16	ENSGT00390000009987 #17	ENSGT00390000010523.c.b #18	ENSGT00940000160209.e	ENSGT00940000158904 #19	ENSGT01080000257365.b.a.a.b.a #20	ENSGT00950000183038.a.b.b.b #21	ENSGT00390000001718 #22	ENSGT00940000159241 #23	ENSGT01090000260082.d.a.a.a.b #24	ENSGT00530000063734.a #25	ENSGT00940000158842 #26	ENSGT00940000160160 #27	ENSGT00940000161094 #28	ENSGT00940000153988.A #29	ENSGT00940000155773.b #31	ENSGT00940000154574.d #32	ENSGT00940000155655.B #33	ENSGT00940000157230 #34	ENSGT00940000155359 #35	ENSGT00950000182878.b.b.k.a.a	ENSGT00530000063836.a #36	ENSGT01050000244842.a.b.a #37
Yarkand deer	MODERN SPECIES	26	RIF1 (ENSCHYG00000025435) #10	NEB (ENSCHYG00000024952) #11	ARL5A (ENSCHYG00000024878) #12	CACNB4 (ENSCHYG00000023861) #13	STAM2 (ENSCHYG00000023731) #14	ENSCHYG00000023717	FMNL2 (ENSCHYG00000023162) #15	PRPF40A (ENSCHYG00000022725) #16	ARL6IP6 (ENSCHYG00000022617) #17	ENSCHYG00000022588	RPRM (ENSCHYG00000022575) #18	ENSCHYG00000022544	GALNT13 (ENSCHYG00000022223) #19	KCNJ3 (ENSCHYG00000022137) #20	NR4A2 (ENSCHYG00000021915) #21	GPD2 (ENSCHYG00000021621) #22	GALNT5 (ENSCHYG00000021379) #23	ERMN (ENSCHYG00000021340) #24	CYTIP (ENSCHYG00000021107) #25	ACVR1C (ENSCHYG00000020862) #26	ENSCHYG00000020838	ACVR1 (ENSCHYG00000020727) #27	UPP2 (ENSCHYG00000020465) #28	CCDC148 (ENSCHYG00000020004) #29	PKP4 (ENSCHYG00000019352) #31	DAPL1 (ENSCHYG00000019166) #32	TANC1 (ENSCHYG00000018314) #33	WDSUB1 (ENSCHYG00000018014) #34	BAZ2B (ENSCHYG00000017313) #35	ENSCHYG00000017244	MARCHF7 (ENSCHYG00000016859) #36
Percora_a	ANCESTRAL SPECIES	5	ENSGT00530000063686.a.a ##7	ENSGT00940000157201 #9	ENSGT00390000012204 #10	ENSGT00940000154533.b.d #11	ENSGT00940000154714 #12	ENSGT00950000182837.b.b #13	ENSGT00940000157055 #14	ENSGT00940000155515.a.b.b.l #15	ENSGT00930000150980.a #16	ENSGT00390000009987 #17	ENSGT00390000010523.c.b #18	ENSGT00940000160209.e	ENSGT00940000158904 #19	ENSGT01080000257365.b.a.a.b.a #20	ENSGT00950000183038.a.b.b.b #21	ENSGT00390000001718 #22	ENSGT00940000159241 #23	ENSGT01090000260082.d.a.a.a.b #24	ENSGT00530000063734.a #25	ENSGT00940000158842 #26	ENSGT00940000160160 #27	ENSGT00940000161094 #28	ENSGT00940000153988.A #29	ENSGT00940000155773.b #31	ENSGT00940000154574.d #32	ENSGT00940000155655.B #33	ENSGT00940000157230 #34	ENSGT00940000155359 #35	ENSGT00950000182878.b.b.k.a.a	ENSGT00530000063836.a #36	ENSGT01050000244842.a.b.a #37
Bovidae	ANCESTRAL SPECIES	8	ENSGT00530000063686.a.a ##7	ENSGT00940000157201 #9	ENSGT00390000012204 #10	ENSGT00940000154533.b.d #11	ENSGT00940000154714 #12	ENSGT00950000182837.b.b #13	ENSGT00940000157055 #14	ENSGT00940000155515.a.b.b.l #15	ENSGT00930000150980.a #16	ENSGT00390000009987 #17	ENSGT00390000010523.c.b #18	ENSGT00940000160209.e	ENSGT00940000158904 #19	ENSGT01080000257365.b.a.a.b.a #20	ENSGT00950000183038.a.b.b.b #21	ENSGT00390000001718 #22	ENSGT00940000159241 #23	ENSGT01090000260082.d.a.a.a.b #24	ENSGT00530000063734.a #25	ENSGT00940000158842 #26	ENSGT00940000160160 #27	ENSGT00940000161094 #28	ENSGT00940000153988.A #29	ENSGT00940000155773.b #31	ENSGT00940000154574.d #32	ENSGT00940000155655.B #33	ENSGT00940000157230 #34	ENSGT00940000155359 #35	ENSGT00950000182878.b.b.k.a.a	ENSGT00530000063836.a #36	ENSGT01050000244842.a.b.a #37
Caprinae	ANCESTRAL SPECIES	5	ENSGT00530000063686.a.a ##7	ENSGT00940000157201 #9	ENSGT00390000012204 #10	ENSGT00940000154533.b.d #11	ENSGT00940000154714 #12	ENSGT00950000182837.b.b #13	ENSGT00940000157055 #14	ENSGT00940000155515.a.b.b.l #15	ENSGT00930000150980.a #16	ENSGT00390000009987 #17	ENSGT00390000010523.c.b #18	ENSGT00940000158904 #19	ENSGT00940000171318	ENSGT01080000257365.b.a.a.b.a #20	ENSGT00950000183038.a.b.b.b #21	ENSGT00390000001718 #22	ENSGT00940000159241 #23	ENSGT01090000260082.d.a.a.a.b #24	ENSGT00530000063734.a #25	ENSGT00940000158842 #26	ENSGT00940000160160 #27	ENSGT00940000161094 #28	ENSGT00940000153988.A #29	ENSGT00940000155773.b #31	ENSGT00940000154574.d #32	ENSGT00940000155655.B #33	ENSGT00940000157230 #34	ENSGT00940000155359 #35	ENSGT00950000182878.b.b.k.a.a	ENSGT00530000063836.a #36	ENSGT01050000244842.a.b.a #37
Rambouillet Sheep	MODERN SPECIES	11	NMI (ENSOARG00020024663) ##7	TNFAIP6 (ENSOARG00020024645) #9	RIF1 (ENSOARG00020024396) #10	NEB (ENSOARG00020024247) #11	ARL5A (ENSOARG00020024180) #12	CACNB4 (ENSOARG00020023560) #13	STAM2 (ENSOARG00020023418) #14	ENSOARG00020023393	FMNL2 (ENSOARG00020023016) #15	PRPF40A (ENSOARG00020022598) #16	ARL6IP6 (ENSOARG00020022563) #17	GALNT13 (ENSOARG00020022232) #19	ENSOARG00020022186	KCNJ3 (ENSOARG00020022128) #20	NR4A2 (ENSOARG00020022011) #21	GPD2 (ENSOARG00020021873) #22	ERMN (ENSOARG00020021747) #24	CYTIP (ENSOARG00020021649) #25	ACVR1C (ENSOARG00020021468) #26	ACVR1 (ENSOARG00020021241) #27	UPP2 (ENSOARG00020021088) #28	CCDC148 (ENSOARG00020020890) #29	PKP4 (ENSOARG00020020474) #31	DAPL1 (ENSOARG00020020413) #32	TANC1 (ENSOARG00020019416) #33	WDSUB1 (ENSOARG00020019026) #34	BAZ2B (ENSOARG00020018501) #35	MARCH7 (ENSOARG00020018026) #36	CD302 (ENSOARG00020017815) #37	LY75 (ENSOARG00020017401) ##37	PLA2R1 (ENSOARG00020016908) ##37
Goat	MODERN SPECIES	11	ARL5A (ENSCHIG00000025329) #12	CACNB4 (ENSCHIG00000013367) #13	ENSCHIG00000022060	STAM2 (ENSCHIG00000020598) #14	ENSCHIG00000010047	FMNL2 (ENSCHIG00000026934) #15	PRPF40A (ENSCHIG00000011660) #16	ARL6IP6 (ENSCHIG00000013866) #17	RPRM (ENSCHIG00000005339) #18	GALNT13 (ENSCHIG00000022466) #19	ENSCHIG00000024495	ENSCHIG00000017562	KCNJ3 (ENSCHIG00000018841) #20	ENSCHIG00000009224	NR4A2 (ENSCHIG00000012843) #21	GPD2 (ENSCHIG00000018054) #22	GALNT5 (ENSCHIG00000001864) #23	ERMN (ENSCHIG00000016766) #24	CYTIP (ENSCHIG00000018333) #25	ACVR1C (ENSCHIG00000013118) #26	ACVR1 (ENSCHIG00000022652) #27	UPP2 (ENSCHIG00000017869) #28	CCDC148 (ENSCHIG00000022642) #29	PKP4 (ENSCHIG00000018303) #31	ENSCHIG00000002234	DAPL1 (ENSCHIG00000023463) #32	TANC1 (ENSCHIG00000026445) #33	WDSUB1 (ENSCHIG00000009513) #34	ENSCHIG00000017676 #35	ENSCHIG00000022217 #35	ENSCHIG00000021712
Bovinae	ANCESTRAL SPECIES	5	ENSGT00940000157201 #9	ENSGT00390000012204 #10	ENSGT00940000154533.b.d #11	ENSGT00940000154714 #12	ENSGT00950000182837.b.b #13	ENSGT00940000157055 #14	ENSGT00390000018085.a.b.b	ENSGT00940000155515.a.b.b.l #15	ENSGT00930000150980.a #16	ENSGT00390000009987 #17	ENSGT00390000010523.c.b #18	ENSGT00940000160209.e	ENSGT00940000158904 #19	ENSGT01080000257365.b.a.a.b.a #20	ENSGT00950000183038.a.b.b.b #21	ENSGT00390000001718 #22	ENSGT00940000159241 #23	ENSGT01090000260082.d.a.a.a.b #24	ENSGT00530000063734.a #25	ENSGT00940000158842 #26	ENSGT00940000160160 #27	ENSGT00940000161094 #28	ENSGT00940000153988.A #29	ENSGT00940000155773.b #31	ENSGT00940000154574.d #32	ENSGT00940000155655.B #33	ENSGT00940000157230 #34	ENSGT00940000155359 #35	ENSGT00950000182878.b.b.k.a.a	ENSGT00530000063836.a #36	ENSGT01050000244842.a.b.a #37
Bos	ANCESTRAL SPECIES	6	ENSGT00390000012204 #10	ENSGT00940000154533.b.d #11	ENSGT00940000154714 #12	ENSGT00950000182837.b.b #13	ENSGT00940000157055 #14	ENSGT00390000018085.a.b.b	ENSGT00940000155515.a.b.b.l #15	ENSGT00930000150980.a #16	ENSGT00390000009987 #17	ENSGT00390000007818.e.b.b	ENSGT00390000010523.c.b #18	ENSGT00940000160209.e	ENSGT00940000158904 #19	ENSGT01080000257365.b.a.a.b.a #20	ENSGT00950000183038.a.b.b.b #21	ENSGT00390000001718 #22	ENSGT00940000155602.i.a	ENSGT00940000159241 #23	ENSGT01090000260082.d.a.a.a.b #24	ENSGT00530000063734.a #25	ENSGT00940000158842 #26	ENSGT00940000160160 #27	ENSGT00940000161094 #28	ENSGT00940000153988.A #29	ENSGT00940000155773.b.f #31	ENSGT00940000154574.d #32	ENSGT00940000155655.B #33	ENSGT00940000157230 #34	ENSGT00940000155359 #35	ENSGT00950000182878.b.b.k.a.a	ENSGT00530000063836.a #36
Bos_a	ANCESTRAL SPECIES	4	ENSGT00940000157201 #9	ENSGT00390000012204 #10	ENSGT00940000154533.b.d #11	ENSGT00940000154714 #12	ENSGT00950000182837.b.b #13	ENSGT00940000157055 #14	ENSGT00390000018085.a.b.b	ENSGT00940000155515.a.b.b.l #15	ENSGT00930000150980.a #16	ENSGT00390000009987 #17	ENSGT00390000007818.e.b.b	ENSGT00390000010523.c.b #18	ENSGT00940000158904 #19	ENSGT01080000257365.b.a.a.b.a #20	ENSGT00950000183038.a.b.b.b #21	ENSGT00390000001718 #22	ENSGT00940000155602.i.a	ENSGT00940000159241 #23	ENSGT01090000260082.d.a.a.a.b #24	ENSGT00530000063734.a #25	ENSGT00940000158842 #26	ENSGT00940000160160 #27	ENSGT00940000161094 #28	ENSGT00940000153988.A #29	ENSGT00940000155773.b.f #31	ENSGT00940000154574.d #32	ENSGT00940000155655.B #33	ENSGT00940000157230 #34	ENSGT00940000155359 #35	ENSGT00950000182878.b.b.k.a.a	ENSGT00530000063836.a #36
Wild yak	MODERN SPECIES	1906															NR4A2 (ENSBMUG00000023402) #21	GPD2 (ENSBMUG00000023381) #22	ENSBMUG00000023326	GALNT5 (ENSBMUG00000023319) #23	ERMN (ENSBMUG00000023310) #24	CYTIP (ENSBMUG00000023301) #25	ACVR1C (ENSBMUG00000023288) #26	ACVR1 (ENSBMUG00000023223) #27	UPP2 (ENSBMUG00000023165) #28
Domestic yak	MODERN SPECIES	11	ENSBGRG00000008336	ARL5A (ENSBGRG00000008374) #12	CACNB4 (ENSBGRG00000008687) #13	STAM2 (ENSBGRG00000015223) #14	FMNL2 (ENSBGRG00000015350) #15	PRPF40A (ENSBGRG00000015929) #16	ARL6IP6 (ENSBGRG00000016671) #17	ENSBGRG00000016778	ENSBGRG00000007210	RPRM (ENSBGRG00000007262) #18	GALNT13 (ENSBGRG00000007349) #19	ENSBGRG00000007820	ENSBGRG00000007847	KCNJ3 (ENSBGRG00000007869) #20	NR4A2 (ENSBGRG00000007951) #21	GPD2 (ENSBGRG00000008160) #22	ENSBGRG00000008596	GALNT5 (ENSBGRG00000008625) #23	ERMN (ENSBGRG00000008771) #24	CYTIP (ENSBGRG00000008859) #25	ACVR1C (ENSBGRG00000009051) #26	ACVR1 (ENSBGRG00000009529) #27	UPP2 (ENSBGRG00000009647) #28	CCDC148 (ENSBGRG00000009770) #29	PKP4 (ENSBGRG00000010064) #31	ENSBGRG00000010385	TANC1 (ENSBGRG00000010534) #33	WDSUB1 (ENSBGRG00000010639) #34	BAZ2B (ENSBGRG00000010962) #35	ENSBGRG00000011593	MARCHF7 (ENSBGRG00000011679) #36
Bos_b	ANCESTRAL SPECIES	3	ENSGT00940000157201 #9	ENSGT00390000012204 #10	ENSGT00940000154533.b.d #11	ENSGT00940000154714 #12	ENSGT00950000182837.b.b #13	ENSGT00940000157055 #14	ENSGT00940000155515.a.b.b.l #15	ENSGT00930000150980.a #16	ENSGT00390000009987 #17	ENSGT00390000007818.e.b.b	ENSGT00390000010523.c.b #18	ENSGT00940000160209.e	ENSGT00940000158904 #19	ENSGT01080000257365.b.a.a.b.a #20	ENSGT00950000183038.a.b.b.b #21	ENSGT00390000001718 #22	ENSGT00940000155602.i.a	ENSGT00940000159241 #23	ENSGT01090000260082.d.a.a.a.b #24	ENSGT00530000063734.a #25	ENSGT00940000158842 #26	ENSGT00940000160160 #27	ENSGT00940000161094 #28	ENSGT00940000153988.A #29	ENSGT00940000155773.b.f #31	ENSGT00940000154574.d #32	ENSGT00940000155655.B #33	ENSGT00940000157230 #34	ENSGT00940000155359 #35	ENSGT00950000182878.b.b.k.a.a	ENSGT00530000063836.a #36
Cow	MODERN SPECIES	11	RIF1 (ENSBTAG00000021020) #10	NEB (ENSBTAG00000006907) #11	ARL5A (ENSBTAG00000002293) #12	CACNB4 (ENSBTAG00000002297) #13	STAM2 (ENSBTAG00000001887) #14	FMNL2 (ENSBTAG00000026851) #15	PRPF40A (ENSBTAG00000048151) #16	ENSBTAG00000047365	ARL6IP6 (ENSBTAG00000001435) #17	ENSBTAG00000033143	RPRM (ENSBTAG00000021526) #18	ENSBTAG00000054139	GALNT13 (ENSBTAG00000005562) #19	KCNJ3 (ENSBTAG00000006159) #20	NR4A2 (ENSBTAG00000003650) #21	GPD2 (ENSBTAG00000009770) #22	ENSBTAG00000054211	GALNT5 (ENSBTAG00000017376) #23	ERMN (ENSBTAG00000012912) #24	CYTIP (ENSBTAG00000008329) #25	ACVR1C (ENSBTAG00000019337) #26	ACVR1 (ENSBTAG00000011909) #27	UPP2 (ENSBTAG00000012801) #28	CCDC148 (ENSBTAG00000004267) #29	ENSBTAG00000049997	PKP4 (ENSBTAG00000013773) #31	DAPL1 (ENSBTAG00000032481) #32	TANC1 (ENSBTAG00000004177) #33	WDSUB1 (ENSBTAG00000004184) #34	BAZ2B (ENSBTAG00000020654) #35	ENSBTAG00000054190
Hybrid Bos Indicus	MODERN SPECIES	11	RIF1 (ENSBIXG00005018091) #10	NEB (ENSBIXG00005018305) #11	ARL5A (ENSBIXG00005002986) #12	CACNB4 (ENSBIXG00005003080) #13	STAM2 (ENSBIXG00005019037) #14	FMNL2 (ENSBIXG00005019262) #15	PRPF40A (ENSBIXG00005005862) #16	ARL6IP6 (ENSBIXG00005003165) #17	ENSBIXG00005019449	RPRM (ENSBIXG00005019467) #18	GALNT13 (ENSBIXG00005019576) #19	ENSBIXG00005019614	ENSBIXG00005006035	KCNJ3 (ENSBIXG00005019661) #20	NR4A2 (ENSBIXG00005019759) #21	GPD2 (ENSBIXG00005019923) #22	ENSBIXG00005019967	GALNT5 (ENSBIXG00005019996) #23	ERMN (ENSBIXG00005020022) #24	CYTIP (ENSBIXG00005020041) #25	ACVR1C (ENSBIXG00005020094) #26	ACVR1 (ENSBIXG00005020163) #27	UPP2 (ENSBIXG00005003353) #28	CCDC148 (ENSBIXG00005003408) #29	PKP4 (ENSBIXG00005020435) #31	DAPL1 (ENSBIXG00005007153) #32	TANC1 (ENSBIXG00005020592) #33	WDSUB1 (ENSBIXG00005020681) #34	ENSBIXG00005020720	BAZ2B (ENSBIXG00005020764) #35	MARCHF7 (ENSBIXG00005003543) #36
American bison	MODERN SPECIES	3062	ARL5A (ENSBBBG00000014197) #12	CACNB4 (ENSBBBG00000014165) #13	STAM2 (ENSBBBG00000013190) #14	ENSBBBG00000007404	ENSBBBG00000002660 #15	PRPF40A (ENSBBBG00000013168) #16	ARL6IP6 (ENSBBBG00000013147) #17	ENSBBBG00000013139	ENSBBBG00000002646	RPRM (ENSBBBG00000013133) #18	GALNT13 (ENSBBBG00000013119) #19	ENSBBBG00000013097	ENSBBBG00000002628	ENSBBBG00000001689 #20	NR4A2 (ENSBBBG00000002625) #21	GPD2 (ENSBBBG00000013051) #22	GALNT5 (ENSBBBG00000012983) #23	ERMN (ENSBBBG00000012974) #24	CYTIP (ENSBBBG00000012958) #25	ACVR1C (ENSBBBG00000001698) #26
Siberian musk deer	MODERN SPECIES	346	FMNL2 (ENSMMSG00000005210) #15	PRPF40A (ENSMMSG00000004797) #16	ARL6IP6 (ENSMMSG00000004675) #17	RPRM (ENSMMSG00000004641) #18	GALNT13 (ENSMMSG00000004530) #19	ENSMMSG00000004501	ENSMMSG00000004482	KCNJ3 (ENSMMSG00000004451) #20	ENSMMSG00000004429	ENSMMSG00000004407	ENSMMSG00000004390	ENSMMSG00000004382	ENSMMSG00000004345	ENSMMSG00000024261	NR4A2 (ENSMMSG00000024259) #21	GPD2 (ENSMMSG00000024256) #22	ENSMMSG00000024254	GALNT5 (ENSMMSG00000024250) #23	ERMN (ENSMMSG00000024248) #24	CYTIP (ENSMMSG00000024245) #25	ACVR1C (ENSMMSG00000024240) #26	ACVR1 (ENSMMSG00000024225) #27	UPP2 (ENSMMSG00000024217) #28	CCDC148 (ENSMMSG00000024199) #29	PKP4 (ENSMMSG00000024173) #31	ENSMMSG00000024171	DAPL1 (ENSMMSG00000024170) #32	TANC1 (ENSMMSG00000024160) #33	WDSUB1 (ENSMMSG00000024154) #34	BAZ2B (ENSMMSG00000024126) #35	ENSMMSG00000024107
Camelidae	ANCESTRAL SPECIES	16	ENSGT00530000063686.a.b #7	ENSGT00530000063686.a.a ##7	ENSGT00940000157201 #9	ENSGT00390000012204 #10	ENSGT00940000154533.b.d #11	ENSGT00940000154714 #12	ENSGT00950000182837.b.b #13	ENSGT00940000157055 #14	ENSGT00940000155515.a.b.b.k.a #15	ENSGT00930000150980.a #16	ENSGT00390000009987 #17	ENSGT00390000010523.c.b #18	ENSGT00940000158904 #19	ENSGT01080000257365.b.a.a.b.a #20	ENSGT00950000183038.a.b.b.b #21	ENSGT00390000001718 #22	ENSGT00940000159241 #23	ENSGT01090000260082.d.a.a.a.b #24	ENSGT00530000063734.a #25	ENSGT00940000158842 #26	ENSGT00940000160160 #27	ENSGT00940000161094 #28	ENSGT00940000153988.A #29	ENSGT00940000155773.b #31	ENSGT00940000154574.d #32	ENSGT00940000155655.B #33	ENSGT00940000157230 #34	ENSGT00940000155359 #35	ENSGT00530000063836.a #36	ENSGT01050000244842.a.b.a #37	ENSGT01050000244842.a.b.b.a.a.a ##37
Alpaca	MODERN SPECIES	3667																GPD2 (ENSVPAG00000008498) #22
Arabian camel	MODERN SPECIES	31	ENSCDRG00005000095 #12	CACNB4 (ENSCDRG00005000236) #13	STAM2 (ENSCDRG00005000826) #14	ENSCDRG00005000883 #15	ENSCDRG00005000923 #15	PRPF40A (ENSCDRG00005000977) #16	ARL6IP6 (ENSCDRG00005001080) #17	ENSCDRG00005001088	RPRM (ENSCDRG00005001096) #18	GALNT13 (ENSCDRG00005001122) #19	ENSCDRG00005001156	KCNJ3 (ENSCDRG00005001176) #20	ENSCDRG00005001195	ENSCDRG00005001216	NR4A2 (ENSCDRG00005001248) #21	GPD2 (ENSCDRG00005001281) #22	GALNT5 (ENSCDRG00005001377) #23	ERMN (ENSCDRG00005001397) #24	CYTIP (ENSCDRG00005001412) #25	ACVR1C (ENSCDRG00005001439) #26	ACVR1 (ENSCDRG00005001459) #27	UPP2 (ENSCDRG00005001485) #28	CCDC148 (ENSCDRG00005001511) #29	PKP4 (ENSCDRG00005001582) #31	DAPL1 (ENSCDRG00005001704) #32	TANC1 (ENSCDRG00005001741) #33	WDSUB1 (ENSCDRG00005001826) #34	BAZ2B (ENSCDRG00005001912) #35	MARCHF7 (ENSCDRG00005002072) #36	CD302 (ENSCDRG00005002145) #37	LY75 (ENSCDRG00005002322) ##37
Suina	ANCESTRAL SPECIES	3	ENSGT00390000010397.b	ENSGT00390000004912	ENSGT00730000111130	ENSGT00390000018525.b	ENSGT00940000153518.d.a	ENSGT01100000263537.b.a.a.b.a	ENSGT00940000157247	ENSGT00720000108834	ENSGT00940000155515.a.b.b.k.a #15	ENSGT00930000150980.a #16	ENSGT00390000009987 #17	ENSGT00390000010523.c.b #18	ENSGT00940000158904 #19	ENSGT01080000257365.b.a.a.b.a #20	ENSGT00950000183038.a.b.b.b #21	ENSGT00390000001718 #22	ENSGT00940000159241 #23	ENSGT01090000260082.d.a.a.a.b #24	ENSGT00530000063734.a #25	ENSGT00940000158842 #26	ENSGT00940000160160 #27	ENSGT00940000161094 #28	ENSGT00940000153988.A #29	ENSGT00940000155773.b #31	ENSGT00940000154574.d #32	ENSGT00940000155655.B #33	ENSGT00940000157230 #34	ENSGT00940000155359 #35	ENSGT00530000063836.a #36	ENSGT01050000244842.a.b.a #37	ENSGT01050000244842.a.b.b.a.a.a ##37
Chacoan peccary	MODERN SPECIES	88	AMMECR1L (ENSCWAG00000016637)	POLR2D (ENSCWAG00000016676)	WDR33 (ENSCWAG00000016738)	SFT2D3 (ENSCWAG00000016788)	LIMS2 (ENSCWAG00000016821)	GPR17 (ENSCWAG00000017000)	MYO7B (ENSCWAG00000017056)	IWS1 (ENSCWAG00000017472)	FMNL2 (ENSCWAG00000017521) #15	PRPF40A (ENSCWAG00000017555) #16	ARL6IP6 (ENSCWAG00000017593) #17	RPRM (ENSCWAG00000017623) #18	GALNT13 (ENSCWAG00000017653) #19	ENSCWAG00000017694 #20	NR4A2 (ENSCWAG00000017750) #21	GPD2 (ENSCWAG00000017911) #22	GALNT5 (ENSCWAG00000017972) #23	ERMN (ENSCWAG00000018039) #24	CYTIP (ENSCWAG00000018082) #25	ACVR1C (ENSCWAG00000018173) #26	ENSCWAG00000018541	ACVR1 (ENSCWAG00000018570) #27	ENSCWAG00000000035	UPP2 (ENSCWAG00000000111) #28	CCDC148 (ENSCWAG00000000141) #29	PKP4 (ENSCWAG00000000197) #31	DAPL1 (ENSCWAG00000000230) #32	TANC1 (ENSCWAG00000000275) #33	WDSUB1 (ENSCWAG00000000328) #34	BAZ2B (ENSCWAG00000000391) #35	MARCHF7 (ENSCWAG00000000432) #36
Pig	MODERN SPECIES	6	LIMS2 (ENSSSCG00000015862)	GPR17 (ENSSSCG00000040850)	MYO7B (ENSSSCG00000015864)	IWS1 (ENSSSCG00000035410)	ENSSSCG00000035546	FMNL2 (ENSSSCG00000015866) #15	PRPF40A (ENSSSCG00000015867) #16	ARL6IP6 (ENSSSCG00000015868) #17	RPRM (ENSSSCG00000052231) #18	ENSSSCG00000052332	GALNT13 (ENSSSCG00000022671) #19	ENSSSCG00000054934	KCNJ3 (ENSSSCG00000036078) #20	ENSSSCG00000061865	NR4A2 (ENSSSCG00000015871) #21	GPD2 (ENSSSCG00000015872) #22	GALNT5 (ENSSSCG00000026146) #23	ERMN (ENSSSCG00000034503) #24	CYTIP (ENSSSCG00000029753) #25	ACVR1C (ENSSSCG00000015873) #26	ACVR1 (ENSSSCG00000015874) #27	ENSSSCG00000032755	UPP2 (ENSSSCG00000021938) #28	ENSSSCG00000015876	PKP4 (ENSSSCG00000015878) #31	DAPL1 (ENSSSCG00000015879) #32	TANC1 (ENSSSCG00000015880) #33	WDSUB1 (ENSSSCG00000035702) #34	BAZ2B (ENSSSCG00000015882) #35	MARCHF7 (ENSSSCG00000015883) #36	CD302 (ENSSSCG00000036050) #37
Laurasiatheria_b	ANCESTRAL SPECIES	16	ENSGT01090000260806	ENSGT00940000157201 #9	ENSGT00390000012204 #10	ENSGT00940000154533.b.d #11	ENSGT00940000154714 #12	ENSGT00950000182837.b.b #13	ENSGT00940000157055 #14	ENSGT00940000155515.a.b.b #15	ENSGT00930000150980.a #16	ENSGT00950000185140	ENSGT00390000009987 #17	ENSGT00390000010523.c.b #18	ENSGT00940000158904 #19	ENSGT01080000257365.b.a.a.b.a #20	ENSGT00950000183038.a.b.b.b #21	ENSGT00390000001718 #22	ENSGT00940000159241 #23	ENSGT01090000260082.d.a.a.a.b #24	ENSGT00530000063734.a #25	ENSGT00940000158842 #26	ENSGT00940000160160 #27	ENSGT00940000161094 #28	ENSGT00940000153988.A #29	ENSGT00940000155773.b #31	ENSGT00940000154574.d #32	ENSGT00940000155655.B #33	ENSGT00940000157230 #34	ENSGT00940000155359 #35	ENSGT00530000063836.a #36	ENSGT01050000244842.a.b.a #37	ENSGT01050000244842.a.b.b.a.a.a ##37
Carnivora	ANCESTRAL SPECIES	17	ENSGT01090000260806	ENSGT00940000157201 #9	ENSGT00390000012204 #10	ENSGT00940000154533.b.d #11	ENSGT00940000154714 #12	ENSGT00950000182837.b.b #13	ENSGT00940000157055 #14	ENSGT00940000155515.a.b.b #15	ENSGT00930000150980.a #16	ENSGT00950000185140	ENSGT00390000009987 #17	ENSGT00390000010523.c.b #18	ENSGT00940000158904 #19	ENSGT01080000257365.b.a.a.b.a #20	ENSGT00950000183038.a.b.b.b #21	ENSGT00390000001718 #22	ENSGT00940000159241 #23	ENSGT01090000260082.d.a.a.a.b #24	ENSGT00530000063734.a #25	ENSGT00940000158842 #26	ENSGT00940000160160 #27	ENSGT00940000161094 #28	ENSGT00940000153988.A #29	ENSGT00940000155773.b #31	ENSGT00940000154574.d #32	ENSGT00940000155655.B #33	ENSGT00940000157230 #34	ENSGT00940000155359 #35	ENSGT00530000063836.a #36	ENSGT01050000244842.a.b.a #37	ENSGT01050000244842.a.b.b.a.a.a ##37
Caniformia	ANCESTRAL SPECIES	14	ENSGT00530000063686.a.a ##7	ENSGT00940000157201 #9	ENSGT00390000012204 #10	ENSGT00940000154533.b.d #11	ENSGT00940000154714 #12	ENSGT00950000182837.b.b #13	ENSGT00940000157055 #14	ENSGT00940000155515.a.b.b #15	ENSGT00930000150980.a #16	ENSGT00950000185140	ENSGT00390000009987 #17	ENSGT00390000010523.c.b #18	ENSGT00940000158904 #19	ENSGT01080000257365.b.a.a.b.a #20	ENSGT00950000183038.a.b.b.b #21	ENSGT00390000001718 #22	ENSGT00940000159241 #23	ENSGT01090000260082.d.a.a.a.b #24	ENSGT00530000063734.a #25	ENSGT00940000158842 #26	ENSGT00940000160160 #27	ENSGT00940000161094 #28	ENSGT00940000153988.A #29	ENSGT00940000155773.b #31	ENSGT00940000154574.d #32	ENSGT00940000156447.a.b	ENSGT00950000185470	ENSGT00940000155655.B #33	ENSGT00940000157230 #34	ENSGT00940000155359 #35	ENSGT00530000063836.a #36
Caniformia_b	ANCESTRAL SPECIES	13	ENSGT00530000063686.a.a ##7	ENSGT00940000157201 #9	ENSGT00390000012204 #10	ENSGT00940000154533.b.d #11	ENSGT00940000154714 #12	ENSGT00950000182837.b.b #13	ENSGT00940000157055 #14	ENSGT00940000155515.a.b.b #15	ENSGT00930000150980.a #16	ENSGT00950000185140	ENSGT00390000009987 #17	ENSGT00390000010523.c.b #18	ENSGT00940000158904 #19	ENSGT01080000257365.b.a.a.b.a #20	ENSGT00950000183038.a.b.b.b #21	ENSGT00390000001718 #22	ENSGT00940000159241 #23	ENSGT01090000260082.d.a.a.a.b #24	ENSGT00530000063734.a #25	ENSGT00940000158842 #26	ENSGT00940000160160 #27	ENSGT00940000161094 #28	ENSGT00940000153988.A #29	ENSGT00940000155773.b #31	ENSGT00940000154574.d #32	ENSGT00950000185470	ENSGT00940000155655.B #33	ENSGT00940000157230 #34	ENSGT00940000155359 #35	ENSGT00530000063836.a #36	ENSGT01050000244842.a.b.a #37
Ursidae	ANCESTRAL SPECIES	7	ENSGT00530000063686.a.a ##7	ENSGT00940000157201 #9	ENSGT00390000012204 #10	ENSGT00940000154533.b.d #11	ENSGT00940000154714 #12	ENSGT00950000182837.b.b #13	ENSGT00940000157055 #14	ENSGT00940000155515.a.b.b #15	ENSGT00930000150980.a #16	ENSGT00950000185140	ENSGT00390000009987 #17	ENSGT00390000010523.c.b #18	ENSGT00940000158904 #19	ENSGT01080000257365.b.a.a.b.a #20	ENSGT00950000183038.a.b.b.b #21	ENSGT00390000001718 #22	ENSGT00940000159241 #23	ENSGT01090000260082.d.a.a.a.b #24	ENSGT00530000063734.a #25	ENSGT00940000158842 #26	ENSGT00940000160160 #27	ENSGT00940000161094 #28	ENSGT00940000153988.A #29	ENSGT00940000155773.b #31	ENSGT00940000154574.d #32	ENSGT00940000155655.B #33	ENSGT00940000157230 #34	ENSGT00940000155359 #35	ENSGT00530000063836.a #36	ENSGT01050000244842.a.b.a #37	ENSGT01050000244842.a.b.b.a.a.a ##37
Ursus	ANCESTRAL SPECIES	4	ENSGT00530000063686.a.a ##7	ENSGT00940000157201 #9	ENSGT00390000012204 #10	ENSGT00940000154533.b.d #11	ENSGT00940000154714 #12	ENSGT00950000182837.b.b #13	ENSGT00940000157055 #14	ENSGT00940000155515.a.b.b #15	ENSGT00930000150980.a #16	ENSGT00950000185140	ENSGT00390000009987 #17	ENSGT01030000235022	ENSGT00940000158904 #19	ENSGT01080000257365.b.a.a.b.a #20	ENSGT00950000183038.a.b.b.b #21	ENSGT00390000001718 #22	ENSGT00940000159241 #23	ENSGT01090000260082.d.a.a.a.b #24	ENSGT00530000063734.a #25	ENSGT00940000158842 #26	ENSGT00940000160160 #27	ENSGT00940000153988.A #29	ENSGT00940000155773.b #31	ENSGT00940000154574.d #32	ENSGT00940000155655.B #33	ENSGT00940000157230 #34	ENSGT00940000155359 #35	ENSGT00530000063836.a #36	ENSGT01050000244842.a.b.a #37	ENSGT01050000244842.a.b.b.a.a.a ##37	ENSGT01050000244842.a.b.b.a.a.b ##37
Polar bear	MODERN SPECIES	142	TNFAIP6 (ENSUMAG00000000232) #9	ENSUMAG00000000262	RIF1 (ENSUMAG00000000337) #10	NEB (ENSUMAG00000001360) #11	ARL5A (ENSUMAG00000002404) #12	CACNB4 (ENSUMAG00000002493) #13	STAM2 (ENSUMAG00000002864) #14	FMNL2 (ENSUMAG00000003036) #15	PRPF40A (ENSUMAG00000004414) #16	ENSUMAG00000005352	ARL6IP6 (ENSUMAG00000005362) #17	ENSUMAG00000005367	GALNT13 (ENSUMAG00000005380) #19	KCNJ3 (ENSUMAG00000005516) #20	NR4A2 (ENSUMAG00000005545) #21	GPD2 (ENSUMAG00000005556) #22	GALNT5 (ENSUMAG00000005567) #23	ERMN (ENSUMAG00000005614) #24	CYTIP (ENSUMAG00000005620) #25	ACVR1C (ENSUMAG00000005629) #26	ACVR1 (ENSUMAG00000005646) #27	CCDC148 (ENSUMAG00000005655) #29	PKP4 (ENSUMAG00000005676) #31	DAPL1 (ENSUMAG00000005700) #32	TANC1 (ENSUMAG00000005841) #33	WDSUB1 (ENSUMAG00000007164) #34	BAZ2B (ENSUMAG00000007209) #35	MARCHF7 (ENSUMAG00000007276) #36	CD302 (ENSUMAG00000007286) #37	LY75 (ENSUMAG00000007410) ##37	PLA2R1 (ENSUMAG00000008404) ##37
American black bear	MODERN SPECIES	4192																GPD2 (ENSUAMG00000024645) #22
Giant Panda	MODERN SPECIES	11	ENSAMEG00000028408 #7	NMI (ENSAMEG00000013032) ##7	TNFAIP6 (ENSAMEG00000013023) #9	RIF1 (ENSAMEG00000008461) #10	NEB (ENSAMEG00000008502) #11	ARL5A (ENSAMEG00000008735) #12	CACNB4 (ENSAMEG00000008758) #13	STAM2 (ENSAMEG00000008825) #14	FMNL2 (ENSAMEG00000017147) #15	PRPF40A (ENSAMEG00000017179) #16	RPRM (ENSAMEG00000019532) #18	GALNT13 (ENSAMEG00000005613) #19	ENSAMEG00000027036	KCNJ3 (ENSAMEG00000029906) #20	NR4A2 (ENSAMEG00000009809) #21	GPD2 (ENSAMEG00000009827) #22	GALNT5 (ENSAMEG00000014381) #23	ERMN (ENSAMEG00000029252) #24	CYTIP (ENSAMEG00000031082) #25	ACVR1C (ENSAMEG00000014338) #26	ACVR1 (ENSAMEG00000014318) #27	ENSAMEG00000031187 #28	CCDC148 (ENSAMEG00000000025) #29	PKP4 (ENSAMEG00000000026) #31	DAPL1 (ENSAMEG00000024131) #32	TANC1 (ENSAMEG00000010277) #33	WDSUB1 (ENSAMEG00000010259) #34	BAZ2B (ENSAMEG00000010194) #35	MARCHF7 (ENSAMEG00000025082) #36	CD302 (ENSAMEG00000000637) #37	LY75 (ENSAMEG00000000642) ##37
Mustelinae	ANCESTRAL SPECIES	21	ENSGT00530000063686.a.b #7	ENSGT00530000063686.a.a ##7	ENSGT00940000157201 #9	ENSGT00390000012204 #10	ENSGT00940000154533.b.d #11	ENSGT00940000154714 #12	ENSGT00950000182837.b.b #13	ENSGT00940000157055 #14	ENSGT00940000155515.a.b.b #15	ENSGT00930000150980.a #16	ENSGT00390000009987 #17	ENSGT00390000010523.c.b #18	ENSGT00940000158904 #19	ENSGT01080000257365.b.a.a.b.a #20	ENSGT00950000183038.a.b.b.b #21	ENSGT00390000001718 #22	ENSGT00940000159241 #23	ENSGT01090000260082.d.a.a.a.b #24	ENSGT00530000063734.a #25	ENSGT00940000158842 #26	ENSGT00940000160160 #27	ENSGT00940000153988.A #29	ENSGT00940000155773.b #31	ENSGT00940000154574.d #32	ENSGT00950000185470	ENSGT00940000155655.B #33	ENSGT00940000157230 #34	ENSGT00940000155359 #35	ENSGT00530000063836.a #36	ENSGT01050000244842.a.b.a #37	ENSGT01050000244842.a.b.b.a.a.a ##37
Ferret	MODERN SPECIES	173	RBM43 (ENSMPUG00000000342) #7	NMI (ENSMPUG00000000344) ##7	TNFAIP6 (ENSMPUG00000000370) #9	RIF1 (ENSMPUG00000000371) #10	NEB (ENSMPUG00000000376) #11	ARL5A (ENSMPUG00000000396) #12	CACNB4 (ENSMPUG00000000400) #13	STAM2 (ENSMPUG00000000404) #14	FMNL2 (ENSMPUG00000000409) #15	PRPF40A (ENSMPUG00000000412) #16	ENSMPUG00000000415 #17	RPRM (ENSMPUG00000019433) #18	GALNT13 (ENSMPUG00000000427) #19	KCNJ3 (ENSMPUG00000000433) #20	NR4A2 (ENSMPUG00000000438) #21	GPD2 (ENSMPUG00000000440) #22	ENSMPUG00000000443	GALNT5 (ENSMPUG00000000452) #23	ERMN (ENSMPUG00000000456) #24	CYTIP (ENSMPUG00000000458) #25	ACVR1C (ENSMPUG00000000461) #26	ACVR1 (ENSMPUG00000000465) #27	CCDC148 (ENSMPUG00000000469) #29	ENSMPUG00000019434	PKP4 (ENSMPUG00000000474) #31	DAPL1 (ENSMPUG00000000479) #32	TANC1 (ENSMPUG00000000482) #33	WDSUB1 (ENSMPUG00000000486) #34	BAZ2B (ENSMPUG00000000490) #35	MARCHF7 (ENSMPUG00000000501) #36	CD302 (ENSMPUG00000000503) #37
American mink	MODERN SPECIES	235											RPRM (ENSNVIG00000008208) #18	ENSNVIG00000008190	GALNT13 (ENSNVIG00000008096) #19	IRK3 (ENSNVIG00000008064) #20	NR4A2 (ENSNVIG00000008016) #21	GPD2 (ENSNVIG00000007955) #22
Canidae	ANCESTRAL SPECIES	45												ENSGT00390000010523.c.b #18	ENSGT00940000158904 #19	ENSGT01080000257365.b.a.a.b.a #20	ENSGT00950000183038.a.b.b.b #21	ENSGT00390000001718 #22	ENSGT00940000159241 #23	ENSGT01090000260082.d.a.a.a.b #24	ENSGT00530000063734.a #25	ENSGT00940000158842 #26	ENSGT00940000160160 #27	ENSGT00940000153988.A #29	ENSGT00940000155773.b #31	ENSGT00940000154574.d #32	ENSGT00940000156447.a.b	ENSGT00950000185470	ENSGT00940000155655.B #33	ENSGT00940000157230 #34	ENSGT00940000155359 #35	ENSGT00530000063836.a #36	ENSGT01050000244842.a.b.a #37
Canis_lupus	ANCESTRAL SPECIES	39												ENSGT00390000010523.c.b #18	ENSGT00940000158904 #19	ENSGT01080000257365.b.a.a.b.a #20	ENSGT00950000183038.a.b.b.b #21	ENSGT00390000001718 #22	ENSGT00390000011401.cb.b	ENSGT00950000182802.B.a.b.b.a.a	ENSGT00940000159241 #23	ENSGT01090000260082.d.a.a.a.b #24	ENSGT00530000063734.a #25	ENSGT00940000158842 #26	ENSGT00940000160160 #27	ENSGT00940000153988.A #29	ENSGT00940000155773.b #31	ENSGT00940000154574.d #32	ENSGT00940000156447.a.b	ENSGT00950000185470	ENSGT00940000155655.B #33	ENSGT00940000157230 #34	ENSGT00940000155359 #35
Dog	MODERN SPECIES	29												ENSCAFG00845024660 #18	GALNT13 (ENSCAFG00845024771) #19	KCNJ3 (ENSCAFG00845025035) #20	NR4A2 (ENSCAFG00845025175) #21	GPD2 (ENSCAFG00845025352) #22	ENSCAFG00845025564	ENSCAFG00845025578	GALNT5 (ENSCAFG00845025607) #23	ERMN (ENSCAFG00845025677) #24	CYTIP (ENSCAFG00845025755) #25	ACVR1C (ENSCAFG00845026018) #26	ACVR1 (ENSCAFG00845026311) #27	CCDC148 (ENSCAFG00845026619) #29	PKP4 (ENSCAFG00845026973) #31	DAPL1 (ENSCAFG00845027456) #32	ENSCAFG00845027531	ENSCAFG00845027802	WDSUB1 (ENSCAFG00845027961) #34	BAZ2B (ENSCAFG00845028154) #35	ENSCAFG00845028381
Dingo	MODERN SPECIES	46												RPRM (ENSCAFG00020010171) #18	GALNT13 (ENSCAFG00020010074) #19	KCNJ3 (ENSCAFG00020010055) #20	NR4A2 (ENSCAFG00020010007) #21	GPD2 (ENSCAFG00020009930) #22	ENSCAFG00020009925	ENSCAFG00020009914	ENSCAFG00020009909	ENSCAFG00020009906	ENSCAFG00020009902 #23	ERMN (ENSCAFG00020009897) #24	CYTIP (ENSCAFG00020009880) #25	ACVR1C (ENSCAFG00020009844) #26	ACVR1 (ENSCAFG00020009821) #27	CCDC148 (ENSCAFG00020009776) #29	PKP4 (ENSCAFG00020009748) #31	DAPL1 (ENSCAFG00020009739) #32	ENSCAFG00020009736	TANC1 (ENSCAFG00020006513) #33	WDSUB1 (ENSCAFG00020006387) #34
Red fox	MODERN SPECIES	15													GALNT13 (ENSVVUG00000020497) #19	KCNJ3 (ENSVVUG00000020489) #20	NR4A2 (ENSVVUG00000020464) #21	GPD2 (ENSVVUG00000020453) #22	GALNT5 (ENSVVUG00000020446) #23	ERMN (ENSVVUG00000020443) #24	CYTIP (ENSVVUG00000020441) #25	ACVR1C (ENSVVUG00000020440) #26	ACVR1 (ENSVVUG00000020425) #27	CCDC148 (ENSVVUG00000020409) #29	PKP4 (ENSVVUG00000020392) #31	DAPL1 (ENSVVUG00000020389) #32	ENSVVUG00000020388	ENSVVUG00000020386	TANC1 (ENSVVUG00000020115) #33	WDSUB1 (ENSVVUG00000020080) #34	BAZ2B (ENSVVUG00000019442) #35	ENSVVUG00000019352	ENSVVUG00000019348
Felidae	ANCESTRAL SPECIES	15	ENSGT00940000157201 #9	ENSGT00910000144227.s.b	ENSGT01050000246169	ENSGT00390000012204 #10	ENSGT00940000154533.b.d.e #11	ENSGT00940000154714 #12	ENSGT00950000182837.b.b #13	ENSGT00940000157055 #14	ENSGT00940000155515.a.b.b #15	ENSGT00930000150980.a #16	ENSGT00390000009987 #17	ENSGT00390000010523.c.b #18	ENSGT00940000158904 #19	ENSGT01080000257365.b.a.a.b.a #20	ENSGT00950000183038.a.b.b.b #21	ENSGT00390000001718 #22	ENSGT00940000159241 #23	ENSGT01090000260082.d.a.a.a.b #24	ENSGT00530000063734.a #25	ENSGT00940000158842 #26	ENSGT00940000160160 #27	ENSGT00960000190219	ENSGT00940000153988.A #29	ENSGT00940000155773.b #31	ENSGT00940000154574.d #32	ENSGT00940000155655.B #33	ENSGT00940000157230 #34	ENSGT00940000155359 #35	ENSGT00530000063836.a #36	ENSGT01050000244842.a.b.a #37	ENSGT01050000244842.a.b.b.a.a.a ##37
Panthera	ANCESTRAL SPECIES	9	ENSGT00910000144227.s.b	ENSGT01050000246169	ENSGT00390000012204 #10	ENSGT00940000154533.b.d.e #11	ENSGT00940000154714 #12	ENSGT00950000182837.b.b #13	ENSGT00940000157055 #14	ENSGT00940000155515.a.b.b #15	ENSGT00930000150980.a #16	ENSGT00390000009987 #17	ENSGT00390000010523.c.b #18	ENSGT00950000183010.a.a.a.b.a.a.b.a.a	ENSGT00940000158904 #19	ENSGT01080000257365.b.a.a.b.a #20	ENSGT00950000183038.a.b.b.b #21	ENSGT00390000001718 #22	ENSGT00940000159241 #23	ENSGT01090000260082.d.a.a.a.b #24	ENSGT00530000063734.a #25	ENSGT00940000158842 #26	ENSGT00940000160160 #27	ENSGT00960000190219	ENSGT00940000153988.A #29	ENSGT00940000155773.b #31	ENSGT00940000154574.d #32	ENSGT00940000155655.B #33	ENSGT00940000157230 #34	ENSGT00940000155359 #35	ENSGT00530000063836.a #36	ENSGT01050000244842.a.b.a #37	ENSGT01050000244842.a.b.b.a.a.a ##37
Panthera_a	ANCESTRAL SPECIES	6	ENSGT00910000144227.s.b	ENSGT01050000246169	ENSGT00390000012204 #10	ENSGT00940000154533.b.d.e #11	ENSGT00940000154714 #12	ENSGT00950000182837.b.b #13	ENSGT00940000157055 #14	ENSGT00940000155515.a.b.b #15	ENSGT00930000150980.a #16	ENSGT00390000009987 #17	ENSGT00390000010523.c.b #18	ENSGT00950000183010.a.a.a.b.a.a.b.a.a	ENSGT00940000158904 #19	ENSGT01080000257365.b.a.a.b.a #20	ENSGT00950000183038.a.b.b.b #21	ENSGT00390000001718 #22	ENSGT00940000159241 #23	ENSGT01090000260082.d.a.a.a.b #24	ENSGT00530000063734.a #25	ENSGT00940000158842 #26	ENSGT00940000160160 #27	ENSGT00960000190219	ENSGT00940000153988.A #29	ENSGT00940000155773.b #31	ENSGT00940000154574.d #32	ENSGT00940000155655.B #33	ENSGT00940000157230 #34	ENSGT00940000155359 #35	ENSGT00530000063836.a #36	ENSGT01050000244842.a.b.a #37	ENSGT01050000244842.a.b.b.a.a.a ##37
lion	MODERN SPECIES	8	ENSPLOG00000022454	ENSPLOG00000022451	RIF1 (ENSPLOG00000022230) #10	NEB (ENSPLOG00000021581) #11	ARL5A (ENSPLOG00000021319) #12	CACNB4 (ENSPLOG00000020979) #13	STAM2 (ENSPLOG00000020809) #14	FMNL2 (ENSPLOG00000020750) #15	PRPF40A (ENSPLOG00000020664) #16	ARL6IP6 (ENSPLOG00000020626) #17	RPRM (ENSPLOG00000020616) #18	ENSPLOG00000020601	GALNT13 (ENSPLOG00000020521) #19	ENSPLOG00000020488 #20	NR4A2 (ENSPLOG00000020391) #21	GPD2 (ENSPLOG00000020340) #22	GALNT5 (ENSPLOG00000020263) #23	ERMN (ENSPLOG00000020235) #24	CYTIP (ENSPLOG00000020216) #25	ACVR1C (ENSPLOG00000020053) #26	ACVR1 (ENSPLOG00000020011) #27	ENSPLOG00000019977	CCDC148 (ENSPLOG00000019795) #29	PKP4 (ENSPLOG00000019696) #31	DAPL1 (ENSPLOG00000019656) #32	TANC1 (ENSPLOG00000019620) #33	WDSUB1 (ENSPLOG00000019560) #34	BAZ2B (ENSPLOG00000019057) #35	MARCHF7 (ENSPLOG00000018888) #36	CD302 (ENSPLOG00000018735) #37	LY75 (ENSPLOG00000018511) ##37
leopard	MODERN SPECIES	1	NEB (ENSPPRG00000002959) #11	ARL5A (ENSPPRG00000008024) #12	CACNB4 (ENSPPRG00000006549) #13	STAM2 (ENSPPRG00000003557) #14	ENSPPRG00000003451	FMNL2 (ENSPPRG00000002927) #15	ENSPPRG00000015709	PRPF40A (ENSPPRG00000001035) #16	ARL6IP6 (ENSPPRG00000000863) #17	RPRM (ENSPPRG00000015575) #18	ENSPPRG00000000163	GALNT13 (ENSPPRG00000023357) #19	ENSPPRG00000015500	KCNJ3 (ENSPPRG00000024706) #20	NR4A2 (ENSPPRG00000024776) #21	GPD2 (ENSPPRG00000014854) #22	GALNT5 (ENSPPRG00000011930) #23	ERMN (ENSPPRG00000011665) #24	CYTIP (ENSPPRG00000011342) #25	ACVR1C (ENSPPRG00000010432) #26	ACVR1 (ENSPPRG00000008596) #27	CCDC148 (ENSPPRG00000008222) #29	ENSPPRG00000006959	PKP4 (ENSPPRG00000004622) #31	DAPL1 (ENSPPRG00000003172) #32	TANC1 (ENSPPRG00000002613) #33	WDSUB1 (ENSPPRG00000001249) #34	BAZ2B (ENSPPRG00000000317) #35	MARCHF7 (ENSPPRG00000012377) #36	CD302 (ENSPPRG00000011741) #37	LY75 (ENSPPRG00000010499) ##37
Tiger	MODERN SPECIES	117	ENSPTIG00000005894	ENSPTIG00000005642	RIF1 (ENSPTIG00000020652) #10	NEB (ENSPTIG00000017078) #11	ARL5A (ENSPTIG00000016763) #12	CACNB4 (ENSPTIG00000014914) #13	STAM2 (ENSPTIG00000014432) #14	FMNL2 (ENSPTIG00000013843) #15	PRPF40A (ENSPTIG00000012673) #16	ARL6IP6 (ENSPTIG00000012359) #17	RPRM (ENSPTIG00000012190) #18	ENSPTIG00000010205	GALNT13 (ENSPTIG00000011908) #19	KCNJ3 (ENSPTIG00000011787) #20	NR4A2 (ENSPTIG00000011197) #21	GPD2 (ENSPTIG00000010856) #22	GALNT5 (ENSPTIG00000010695) #23	ERMN (ENSPTIG00000010446) #24	CYTIP (ENSPTIG00000010346) #25	ACVR1C (ENSPTIG00000010133) #26	ACVR1 (ENSPTIG00000009840) #27	CCDC148 (ENSPTIG00000009504) #29	PKP4 (ENSPTIG00000009059) #31	DAPL1 (ENSPTIG00000008896) #32	TANC1 (ENSPTIG00000008763) #33	WDSUB1 (ENSPTIG00000008515) #34	BAZ2B (ENSPTIG00000007795) #35	MARCHF7 (ENSPTIG00000007144) #36	CD302 (ENSPTIG00000006970) #37	LY75 (ENSPTIG00000006284) ##37	PLA2R1 (ENSPTIG00000005461) ##37
Cat	MODERN SPECIES	239	ENSFCAG00000052372	RIF1 (ENSFCAG00000029742) #10	ENSFCAG00000006778 #11	ARL5A (ENSFCAG00000014742) #12	CACNB4 (ENSFCAG00000024935) #13	STAM2 (ENSFCAG00000025382) #14	ENSFCAG00000038415	FMNL2 (ENSFCAG00000005239) #15	PRPF40A (ENSFCAG00000005241) #16	ARL6IP6 (ENSFCAG00000032831) #17	RPRM (ENSFCAG00000035890) #18	GALNT13 (ENSFCAG00000002404) #19	ENSFCAG00000027093	KCNJ3 (ENSFCAG00000029250) #20	NR4A2 (ENSFCAG00000011696) #21	GPD2 (ENSFCAG00000011697) #22	GALNT5 (ENSFCAG00000007503) #23	ERMN (ENSFCAG00000038135) #24	CYTIP (ENSFCAG00000028553) #25	ACVR1C (ENSFCAG00000011271) #26	ACVR1 (ENSFCAG00000008054) #27	ENSFCAG00000050722	CCDC148 (ENSFCAG00000007319) #29	PKP4 (ENSFCAG00000015402) #31	DAPL1 (ENSFCAG00000015403) #32	TANC1 (ENSFCAG00000011120) #33	WDSUB1 (ENSFCAG00000030479) #34	BAZ2B (ENSFCAG00000007573) #35	MARCHF7 (ENSFCAG00000025572) #36	CD302 (ENSFCAG00000034070) #37	LY75 (ENSFCAG00000007081) ##37
Laurasiatheria_c	ANCESTRAL SPECIES	18	ENSGT00530000063686.a.b #7	ENSGT00530000063686.a.a ##7	ENSGT00940000157201 #9	ENSGT00390000012204 #10	ENSGT00940000154533.b.d #11	ENSGT00940000154714 #12	ENSGT00950000182837.b.b #13	ENSGT00940000157055 #14	ENSGT00940000155515.a.b.b #15	ENSGT00930000150980.a #16	ENSGT00390000009987 #17	ENSGT00390000010523.c.b #18	ENSGT00940000158904 #19	ENSGT01080000257365.b.a.a.b.a #20	ENSGT00950000183038.a.b.b.b #21	ENSGT00390000001718 #22	ENSGT00940000159241 #23	ENSGT01090000260082.d.a.a.a.b #24	ENSGT00530000063734.a #25	ENSGT00940000158842 #26	ENSGT00940000160160 #27	ENSGT00940000161094 #28	ENSGT00940000153988.A #29	ENSGT00940000155773.b #31	ENSGT00940000154574.d #32	ENSGT00940000155655.B #33	ENSGT00940000157230 #34	ENSGT00940000155359 #35	ENSGT00530000063836.a #36	ENSGT01050000244842.a.b.a #37	ENSGT01050000244842.a.b.b.a.a.a ##37
Equus	ANCESTRAL SPECIES	18	ENSGT00530000063686.a.b #7	ENSGT00530000063686.a.a ##7	ENSGT00940000157201 #9	ENSGT00390000012204 #10	ENSGT00940000154533.b.d #11	ENSGT00940000154714 #12	ENSGT00950000182837.b.b #13	ENSGT00940000157055 #14	ENSGT00940000155515.a.b.b #15	ENSGT00930000150980.a #16	ENSGT00390000009987 #17	ENSGT00390000010523.c.b #18	ENSGT00940000158904 #19	ENSGT01080000257365.b.a.a.b.a #20	ENSGT00950000183038.a.b.b.b #21	ENSGT00390000001718 #22	ENSGT00940000159241 #23	ENSGT01090000260082.d.a.a.a.b #24	ENSGT00530000063734.a #25	ENSGT00940000158842 #26	ENSGT00940000160160 #27	ENSGT00940000153988.A #29	ENSGT00940000155773.b #31	ENSGT00940000154574.d #32	ENSGT00940000155655.B #33	ENSGT00940000157230 #34	ENSGT00940000155359 #35	ENSGT00530000063836.a #36	ENSGT01050000244842.a.b.a #37	ENSGT01050000244842.a.b.b.a.a.a ##37	ENSGT01050000244842.a.b.b.a.a.b ##37
Horse	MODERN SPECIES	9	NEB (ENSECAG00000020638) #11	ARL5A (ENSECAG00000023672) #12	CACNB4 (ENSECAG00000056636) #13	STAM2 (ENSECAG00000021355) #14	FMNL2 (ENSECAG00000011111) #15	ENSECAG00000001048	PRPF40A (ENSECAG00000009113) #16	ARL6IP6 (ENSECAG00000007580) #17	RPRM (ENSECAG00000001246) #18	GALNT13 (ENSECAG00000007821) #19	KCNJ3 (ENSECAG00000001276) #20	ENSECAG00000046581	ENSECAG00000002256	ENSECAG00000058726	NR4A2 (ENSECAG00000014232) #21	GPD2 (ENSECAG00000018290) #22	GALNT5 (ENSECAG00000012388) #23	ERMN (ENSECAG00000017073) #24	CYTIP (ENSECAG00000017457) #25	ACVR1C (ENSECAG00000019682) #26	ACVR1 (ENSECAG00000018902) #27	CCDC148 (ENSECAG00000003553) #29	PKP4 (ENSECAG00000014290) #31	DAPL1 (ENSECAG00000015671) #32	TANC1 (ENSECAG00000018415) #33	WDSUB1 (ENSECAG00000001100) #34	BAZ2B (ENSECAG00000012235) #35	MARCHF7 (ENSECAG00000015805) #36	CD302 (ENSECAG00000020320) #37	LY5 (ENSECAG00000022703) ##37	PLA2R1 (ENSECAG00000023815) ##37
Donkey	MODERN SPECIES	24	NMI (ENSEASG00005023440) ##7	TNFAIP6 (ENSEASG00005023439) #9	RIF1 (ENSEASG00005023434) #10	ENSEASG00005038507 #11	ENSEASG00005023364 #11	ARL5A (ENSEASG00005023347) #12	CACNB4 (ENSEASG00005023346) #13	STAM2 (ENSEASG00005023344) #14	FMNL2 (ENSEASG00005023341) #15	PRPF40A (ENSEASG00005023328) #16	ARL6IP6 (ENSEASG00005023320) #17	RPRM (ENSEASG00005023316) #18	GALNT13 (ENSEASG00005023315) #19	KCNJ3 (ENSEASG00005023313) #20	NR4A2 (ENSEASG00005023310) #21	GPD2 (ENSEASG00005023309) #22	GALNT5 (ENSEASG00005023306) #23	ERMN (ENSEASG00005026686) #24	ENSEASG00005029587 #25	ACVR1C (ENSEASG00005023296) #26	ACVR1 (ENSEASG00005023294) #27	CCDC148 (ENSEASG00005023292) #29	PKP4 (ENSEASG00005023266) #31	DAPL1 (ENSEASG00005023258) #32	TANC1 (ENSEASG00005023239) #33	WDSUB1 (ENSEASG00005023237) #34	BAZ2B (ENSEASG00005023209) #35	MARCHF7 (ENSEASG00005023165) #36	CD302 (ENSEASG00005025575) #37	LY75 (ENSEASG00005023153) ##37	PLA2R1 (ENSEASG00005023140) ##37
Chiroptera	ANCESTRAL SPECIES	11	ENSGT00530000063686.a.b #7	ENSGT00530000063686.a.a ##7	ENSGT00940000157201 #9	ENSGT00390000012204 #10	ENSGT00940000154533.b.d #11	ENSGT00940000154714 #12	ENSGT00950000182837.b.b #13	ENSGT00940000157055 #14	ENSGT00940000155515.a.b.b #15	ENSGT00930000150980.a #16	ENSGT00390000009987 #17	ENSGT00390000010523.c.b #18	ENSGT00940000158904 #19	ENSGT01080000257365.b.a.a.b.a #20	ENSGT00950000183038.a.b.b.b #21	ENSGT00390000001718 #22	ENSGT00940000159241 #23	ENSGT01090000260082.d.a.a.a.b #24	ENSGT00530000063734.a #25	ENSGT00940000158842 #26	ENSGT00940000160160 #27	ENSGT00940000161094 #28	ENSGT00940000153988.A #29	ENSGT00940000155773.b #31	ENSGT00940000154574.d #32	ENSGT00940000155655.B #33	ENSGT00940000157230 #34	ENSGT00940000155359 #35	ENSGT00530000063836.a #36	ENSGT01050000244842.a.b.a #37	ENSGT01050000244842.a.b.b.a.a.a ##37
Microchiroptera	ANCESTRAL SPECIES	15	ENSGT00530000063686.a.b #7	ENSGT00530000063686.a.a ##7	ENSGT00940000157201 #9	ENSGT00390000012204 #10	ENSGT00940000154533.b.d #11	ENSGT00940000154714 #12	ENSGT00950000182837.b.b #13	ENSGT00940000157055 #14	ENSGT00940000155515.a.b.b #15	ENSGT00930000150980.a #16	ENSGT00390000009987 #17	ENSGT00390000010523.c.b #18	ENSGT00940000158904 #19	ENSGT01080000257365.b.a.a.b.a #20	ENSGT00950000183038.a.b.b.b #21	ENSGT00390000001718 #22	ENSGT00940000159241 #23	ENSGT01090000260082.d.a.a.a.b #24	ENSGT00530000063734.a #25	ENSGT00940000158842 #26	ENSGT00940000160160 #27	ENSGT00940000161094 #28	ENSGT00940000153988.A #29	ENSGT00940000155773.b #31	ENSGT00940000154574.d #32	ENSGT00940000155655.B #33	ENSGT00940000157230 #34	ENSGT00940000155359 #35	ENSGT00530000063836.a #36	ENSGT01050000244842.a.b.a #37	ENSGT01050000244842.a.b.b.a.a.a ##37
Greater horseshoe bat	MODERN SPECIES	26	RBM43 (ENSRFEG00010004990) #7	NMI (ENSRFEG00010004983) ##7	TNFAIP6 (ENSRFEG00010004979) #9	RIF1 (ENSRFEG00010004943) #10	NEB (ENSRFEG00010003197) #11	ARL5A (ENSRFEG00010001991) #12	CACNB4 (ENSRFEG00010001762) #13	STAM2 (ENSRFEG00010001637) #14	FMNL2 (ENSRFEG00010001562) #15	PRPF40A (ENSRFEG00010001279) #16	ARL6IP6 (ENSRFEG00010001173) #17	RPRM (ENSRFEG00010001141) #18	GALNT13 (ENSRFEG00010001100) #19	KCNJ3 (ENSRFEG00010001072) #20	NR4A2 (ENSRFEG00010001043) #21	GPD2 (ENSRFEG00010001004) #22	GALNT5 (ENSRFEG00010000968) #23	ERMN (ENSRFEG00010000944) #24	CYTIP (ENSRFEG00010000916) #25	ACVR1C (ENSRFEG00010000861) #26	ACVR1 (ENSRFEG00010000822) #27	UPP2 (ENSRFEG00010000790) #28	CCDC148 (ENSRFEG00010000691) #29	ENSRFEG00010000642	PKP4 (ENSRFEG00010000530) #31	DAPL1 (ENSRFEG00010000436) #32	TANC1 (ENSRFEG00010000352) #33	WDSUB1 (ENSRFEG00010000284) #34	BAZ2B (ENSRFEG00010006183) #35	MARCHF7 (ENSRFEG00010005700) #36	CD302 (ENSRFEG00010005638) #37
Microbat	MODERN SPECIES	1026			ARL5A (ENSMLUG00000003458) #12	CACNB4 (ENSMLUG00000003465) #13	STAM2 (ENSMLUG00000003477) #14	FMNL2 (ENSMLUG00000014867) #15	PRPF40A (ENSMLUG00000014881) #16	ARL6IP6 (ENSMLUG00000023268) #17	ENSMLUG00000030388	RPRM (ENSMLUG00000022854) #18	GALNT13 (ENSMLUG00000015972) #19	KCNJ3 (ENSMLUG00000010559) #20	ENSMLUG00000029954	ENSMLUG00000025509	NR4A2 (ENSMLUG00000008683) #21	GPD2 (ENSMLUG00000001655) #22	GALNT5 (ENSMLUG00000003542) #23	ENSMLUG00000003547 #24	CYTIP (ENSMLUG00000002426) #25	ACVR1C (ENSMLUG00000002433) #26	ACVR1 (ENSMLUG00000010119) #27
Megabat	MODERN SPECIES	7488															NR4A2 (ENSPVAG00000005251) #21	GPD2 (ENSPVAG00000005255) #22
Eulipotyphla	ANCESTRAL SPECIES																	ENSGT00390000001718 #22
Common shrew	MODERN SPECIES	1151																GPD2 (ENSSARG00000006999) #22
Hedgehog	MODERN SPECIES	1684																GPD2 (ENSEEUG00000007968) #22
Atlantogenata	ANCESTRAL SPECIES	9	ENSGT00530000063686.a.b #7	ENSGT00530000063686.a.a ##7	ENSGT00940000157201 #9	ENSGT00390000012204 #10	ENSGT00940000154533.b.d #11	ENSGT00940000154714 #12	ENSGT00950000182837.b.b #13	ENSGT00940000157055 #14	ENSGT00940000155515.a.b.b #15	ENSGT00930000150980.a #16	ENSGT00390000009987 #17	ENSGT00390000010523.c.b #18	ENSGT00940000158904 #19	ENSGT01080000257365.b.a.a.b.a #20	ENSGT00950000183038.a.b.b.b #21	ENSGT00390000001718 #22	ENSGT00940000159241 #23	ENSGT01090000260082.d.a.a.a.b #24	ENSGT00530000063734.a #25	ENSGT00940000158842 #26	ENSGT00940000160160 #27	ENSGT00940000161094 #28	ENSGT00940000153988.A #29	ENSGT00940000155773.b #31	ENSGT00940000154574.d #32	ENSGT00940000155655.B #33	ENSGT00940000157230 #34	ENSGT00940000155359 #35	ENSGT00530000063836.a #36	ENSGT01050000244842.a.b.a #37	ENSGT01050000244842.a.b.b.a.a.a ##37
Xenarthra	ANCESTRAL SPECIES	844															ENSGT00950000183038.a.b.b.b #21	ENSGT00390000001718 #22	ENSGT00940000159241 #23	ENSGT01090000260082.d.a.a.a.b #24	ENSGT00530000063734.a #25	ENSGT00940000158842 #26
Armadillo	MODERN SPECIES	1110													ENSDNOG00000045432	ENSDNOG00000040257	NR4A2 (ENSDNOG00000031336) #21	GPD2 (ENSDNOG00000009348) #22	GALNT5 (ENSDNOG00000033007) #23	ERMN (ENSDNOG00000040595) #24	CYTIP (ENSDNOG00000049227) #25	ACVR1C (ENSDNOG00000004277) #26	ENSDNOG00000039978	ENSDNOG00000040727	FBXL7 (ENSDNOG00000049796)	ENSDNOG00000031427	ZNF622 (ENSDNOG00000035990)	RETREG1 (ENSDNOG00000018975)	MYO10 (ENSDNOG00000004469)	BASP1 (ENSDNOG00000035443)
Sloth	MODERN SPECIES	1418																GPD2 (ENSCHOG00000008673) #22
Afrotheria	ANCESTRAL SPECIES	1	ENSGT00530000063686.a.b #7	ENSGT00530000063686.a.a ##7	ENSGT00940000157201 #9	ENSGT00390000012204 #10	ENSGT00940000154533.b.d #11	ENSGT00940000154714 #12	ENSGT00950000182837.b.b #13	ENSGT00940000157055 #14	ENSGT00940000155515.a.b.b #15	ENSGT00930000150980.a #16	ENSGT00390000009987 #17	ENSGT00390000010523.c.b #18	ENSGT00940000158904 #19	ENSGT01080000257365.b.a.a.b.a #20	ENSGT00950000183038.a.b.b.b #21	ENSGT00390000001718 #22	ENSGT00940000159241 #23	ENSGT01090000260082.d.a.a.a.b #24	ENSGT00530000063734.a #25	ENSGT00940000158842 #26	ENSGT00940000160160 #27	ENSGT00940000161094 #28	ENSGT00940000153988.A #29	ENSGT00940000155773.b #31	ENSGT00940000154574.d #32	ENSGT00940000155655.B #33	ENSGT00940000157230 #34	ENSGT00940000155359 #35	ENSGT00530000063836.a #36	ENSGT01050000244842.a.b.a #37	ENSGT01050000244842.a.b.b.a.a.a ##37
Afrotheria_a	ANCESTRAL SPECIES	1	ENSGT00530000063686.a.b #7	ENSGT00530000063686.a.a ##7	ENSGT00940000157201 #9	ENSGT00390000012204 #10	ENSGT00940000154533.b.d #11	ENSGT00940000154714 #12	ENSGT00950000182837.b.b #13	ENSGT00940000157055 #14	ENSGT00940000155515.a.b.b #15	ENSGT00930000150980.a #16	ENSGT00390000009987 #17	ENSGT00390000010523.c.b #18	ENSGT00940000158904 #19	ENSGT01080000257365.b.a.a.b.a #20	ENSGT00950000183038.a.b.b.b #21	ENSGT00390000001718 #22	ENSGT00940000159241 #23	ENSGT01090000260082.d.a.a.a.b #24	ENSGT00530000063734.a #25	ENSGT00940000158842 #26	ENSGT00940000160160 #27	ENSGT00940000161094 #28	ENSGT00940000153988.A #29	ENSGT00940000155773.b #31	ENSGT00940000154574.d #32	ENSGT00940000155655.B #33	ENSGT00940000157230 #34	ENSGT00940000155359 #35	ENSGT00530000063836.a #36	ENSGT01050000244842.a.b.a #37	ENSGT01050000244842.a.b.b.a.a.a ##37
Elephant	MODERN SPECIES	301	RBM43 (ENSLAFG00000010512) #7	NMI (ENSLAFG00000012842) ##7	TNFAIP6 (ENSLAFG00000009790) #9	RIF1 (ENSLAFG00000009796) #10	NEB (ENSLAFG00000009810) #11	ARL5A (ENSLAFG00000032104) #12	CACNB4 (ENSLAFG00000009844) #13	STAM2 (ENSLAFG00000009848) #14	FMNL2 (ENSLAFG00000001605) #15	PRPF40A (ENSLAFG00000001613) #16	ARL6IP6 (ENSLAFG00000001616) #17	RPRM (ENSLAFG00000001386) #18	GALNT13 (ENSLAFG00000005947) #19	KCNJ3 (ENSLAFG00000022282) #20	NR4A2 (ENSLAFG00000018512) #21	GPD2 (ENSLAFG00000009569) #22	GALNT5 (ENSLAFG00000003531) #23	ERMN (ENSLAFG00000006133) #24	CYTIP (ENSLAFG00000000259) #25	ACVR1C (ENSLAFG00000022543) #26	ACVR1 (ENSLAFG00000006865) #27	ENSLAFG00000028549	CCDC148 (ENSLAFG00000002906) #29	PKP4 (ENSLAFG00000011403) #31	DAPL1 (ENSLAFG00000004582) #32	TANC1 (ENSLAFG00000009825) #33	WDSUB1 (ENSLAFG00000009831) #34	BAZ2B (ENSLAFG00000014380) #35	MARCHF7 (ENSLAFG00000010143) #36	CD302 (ENSLAFG00000010149) #37	LY75 (ENSLAFG00000010153) ##37
Hyrax	MODERN SPECIES	1288																GPD2 (ENSPCAG00000008329) #22
Tenrec	MODERN SPECIES	1617																GPD2 (ENSETEG00000003623) #22
Marsupialia	ANCESTRAL SPECIES	5	ENSGT00530000063686.a.b #7	ENSGT00530000063686.a.a ##7	ENSGT00940000157201 #9	ENSGT00390000012204 #10	ENSGT00940000154533.b.d #11	ENSGT00940000154714 #12	ENSGT00950000182837.b.b #13	ENSGT00940000157055 #14	ENSGT00940000155515.a.b.b #15	ENSGT00930000150980.a #16	ENSGT00390000009987 #17	ENSGT00390000010523.c.b #18	ENSGT00940000158904 #19	ENSGT01080000257365.b.a.a.b.a #20	ENSGT00950000183038.a.b.b.b #21	ENSGT00390000001718 #22	ENSGT00940000159241 #23	ENSGT01090000260082.d.a.a.a.b #24	ENSGT00530000063734.a #25	ENSGT00940000158842 #26	ENSGT00940000160160 #27	ENSGT00940000161094 #28	ENSGT00940000153988.A #29	ENSGT00940000155773.b #31	ENSGT00940000154574.d #32	ENSGT00940000155655.B #33	ENSGT00940000157230 #34	ENSGT00940000155359 #35	ENSGT00530000063836.a #36	ENSGT01050000244842.a.b.a #37	ENSGT01050000244842.a.b.b.a.a.a ##37
Marsupialia_b	ANCESTRAL SPECIES	3	ENSGT00530000063686.a.b #7	ENSGT00530000063686.a.a ##7	ENSGT00940000157201 #9	ENSGT00390000012204 #10	ENSGT00940000154533.b.d #11	ENSGT00940000154714 #12	ENSGT00950000182837.b.b #13	ENSGT00940000157055 #14	ENSGT00940000155515.a.b.b #15	ENSGT00930000150980.a #16	ENSGT00390000009987 #17	ENSGT00390000010523.c.b #18	ENSGT00940000158904 #19	ENSGT01080000257365.b.a.a.b.a #20	ENSGT00950000183038.a.b.b.b #21	ENSGT00390000001718 #22	ENSGT00940000159241 #23	ENSGT01090000260082.d.a.a.a.b #24	ENSGT00530000063734.a #25	ENSGT00940000158842 #26	ENSGT00940000160160 #27	ENSGT00940000161094 #28	ENSGT00940000153988.A #29	ENSGT00940000155773.b #31	ENSGT00940000154574.d #32	ENSGT00940000155655.B #33	ENSGT00940000157230 #34	ENSGT00940000155359 #35	ENSGT00530000063836.a #36	ENSGT01050000244842.a.b.a #37	ENSGT01050000244842.a.b.b.a.a.a ##37
Diprotodontia	ANCESTRAL SPECIES	11	ENSGT00530000063686.a.b #7	ENSGT00530000063686.a.a ##7	ENSGT00940000157201 #9	ENSGT00390000012204 #10	ENSGT00940000154533.b.d #11	ENSGT00940000154714 #12	ENSGT00950000182837.b.b #13	ENSGT00940000157055 #14	ENSGT00940000155515.a.b.b #15	ENSGT00930000150980.a #16	ENSGT00390000009987 #17	ENSGT00390000010523.c.b #18	ENSGT00940000158904 #19	ENSGT01080000257365.b.a.a.b.a #20	ENSGT00950000183038.a.b.b.b #21	ENSGT00390000001718 #22	ENSGT00940000159241 #23	ENSGT01090000260082.d.a.a.a.b #24	ENSGT00530000063734.a #25	ENSGT00940000158842 #26	ENSGT00940000160160 #27	ENSGT00940000161094 #28	ENSGT00940000153988.A #29	ENSGT00940000155773.b #31	ENSGT00940000154574.d #32	ENSGT00940000155655.B #33	ENSGT00940000157230 #34	ENSGT00940000155359 #35	ENSGT00530000063836.a #36	ENSGT01050000244842.a.b.a #37	ENSGT01050000244842.a.b.b.a.a.a ##37
Diprotodontia_a	ANCESTRAL SPECIES	9	ENSGT00530000063686.a.a ##7	ENSGT00940000157201 #9	ENSGT00390000012204 #10	ENSGT00940000154533.b.d #11	ENSGT00940000154714 #12	ENSGT00950000182837.b.b #13	ENSGT00940000157055 #14	ENSGT00940000155515.a.b.b #15	ENSGT00930000150980.a #16	ENSGT00390000009987 #17	ENSGT00390000010523.c.b #18	ENSGT00940000158904 #19	ENSGT01080000257365.b.a.a.b.a #20	ENSGT00940000160377.p	ENSGT00950000183038.a.b.b.b #21	ENSGT00390000001718 #22	ENSGT00940000159241 #23	ENSGT01090000260082.d.a.a.a.b #24	ENSGT00530000063734.a #25	ENSGT00940000158842 #26	ENSGT00940000160160 #27	ENSGT00940000161094 #28	ENSGT00940000153988.A #29	ENSGT00940000155773.b #31	ENSGT00940000154574.d #32	ENSGT00940000155655.B #33	ENSGT00940000157230 #34	ENSGT00940000155359 #35	ENSGT00530000063836.a #36	ENSGT01050000244842.a.b.a #37	ENSGT01050000244842.a.b.b.a.a.a ##37
Common wonbat	DUPLICATION
Common wonbat	MODERN SPECIES	1018			ENSVURG00010022061 #14	ENSVURG00010022038 #15	ENSVURG00010022019 #16	ENSVURG00010022015 #17	ENSVURG00010022012 #18	ENSVURG00010022009	ENSVURG00010022002 #19	ENSVURG00010021934 #19	ENSVURG00010021925 #20	ENSVURG00010021916	ENSVURG00010021913	ENSVURG00010021911	ENSVURG00010021905 #21	ENSVURG00010021899 #22	ENSVURG00010021893 #23	ENSVURG00010021888 #24	ENSVURG00010021884 #25	ENSVURG00010021840 #26	ENSVURG00010021820 #27	ENSVURG00010021811 #28	CCDC148 (ENSVURG00010021806) #29	ENSVURG00010021798 #31	ENSVURG00010021789 #32	ENSVURG00010021779 #33	ENSVURG00010021773 #34	ENSVURG00010021762 #35	ENSVURG00010021748 #36	ENSVURG00010021743 #37	ENSVURG00010021736 ##37
Common wonbat	MODERN SPECIES	1018	SPATS2L (ENSVURG00010016539)	KCTD18 (ENSVURG00010016512)	ENSVURG00010016490 #14	ENSVURG00010016392 #15	ENSVURG00010016286 #16	ENSVURG00010016266 #17	ENSVURG00010016261 #18	ENSVURG00010016251	ENSVURG00010016231 #19	ENSVURG00010015949 #19	ENSVURG00010015914 #20	ENSVURG00010015905	ENSVURG00010015899	ENSVURG00010015896	ENSVURG00010015880 #21	ENSVURG00010015850 #22	ENSVURG00010015786 #23	ENSVURG00010015774 #24	ENSVURG00010015768 #25	ENSVURG00010015714 #26	ENSVURG00010015688 #27	ENSVURG00010015137 #28	ENSVURG00010015002 #31	ENSVURG00010014961 #32	ENSVURG00010014943 #33	ENSVURG00010014928 #34	ENSVURG00010004356 #35	ENSVURG00010003796 #36	ENSVURG00010003780 #37	ENSVURG00010003645 ##37	ENSVURG00010003629
koala	MODERN SPECIES	106								GALNT13 (ENSPCIG00000019129) #19	ENSPCIG00000009709	KCNJ3 (ENSPCIG00000028769) #20	ENSPCIG00000032559	ENSPCIG00000023300	ENSPCIG00000023299	NR4A2 (ENSPCIG00000015078) #21	ENSPCIG00000015071	GPD2 (ENSPCIG00000015066) #22	GALNT5 (ENSPCIG00000003972) #23	ERMN (ENSPCIG00000003984) #24	CYTIP (ENSPCIG00000003994) #25	ACVR1C (ENSPCIG00000004001) #26	ENSPCIG00000004022	ACVR1 (ENSPCIG00000004031) #27	UPP2 (ENSPCIG00000028123) #28	ENSPCIG00000028794	PKP4 (ENSPCIG00000028795) #31	ENSPCIG00000036633	DAPL1 (ENSPCIG00000037017) #32	TANC1 (ENSPCIG00000002529) #33	WDSUB1 (ENSPCIG00000002545) #34	BAZ2B (ENSPCIG00000003070) #35	MARCHF7 (ENSPCIG00000018311) #36
Wallaby	MODERN SPECIES	2391																GPD2 (ENSMEUG00000004344) #22
Tasmanian devil	MODERN SPECIES	2	ENSSHAG00000026547 #7	NMI (ENSSHAG00000018439) ##7	TNFAIP6 (ENSSHAG00000022583) #9	RIF1 (ENSSHAG00000018552) #10	NEB (ENSSHAG00000018591) #11	CACNB4 (ENSSHAG00000026802) #13	STAM2 (ENSSHAG00000029280) #14	FMNL2 (ENSSHAG00000005004) #15	PRPF40A (ENSSHAG00000009029) #16	ARL6IP6 (ENSSHAG00000028317) #17	RPRM (ENSSHAG00000025986) #18	GALNT13 (ENSSHAG00000031696) #19	KCNJ3 (ENSSHAG00000032170) #20	ENSSHAG00000032207	NR4A2 (ENSSHAG00000012981) #21	GPD2 (ENSSHAG00000013793) #22	GALNT5 (ENSSHAG00000016592) #23	ERMN (ENSSHAG00000025380) #24	CYTIP (ENSSHAG00000016862) #25	ACVR1C (ENSSHAG00000017075) #26	ACVR1 (ENSSHAG00000017429) #27	UPP2 (ENSSHAG00000017989) #28	CCDC148 (ENSSHAG00000018087) #29	PKP4 (ENSSHAG00000018371) #31	DAPL1 (ENSSHAG00000018675) #32	TANC1 (ENSSHAG00000018782) #33	WDSUB1 (ENSSHAG00000018839) #34	BAZ2B (ENSSHAG00000018872) #35	MARCHF7 (ENSSHAG00000006983) #36	ENSSHAG00000007345 #37	LY75 (ENSSHAG00000007930) ##37
Opossum	MODERN SPECIES	3	STAM2 (ENSMODG00000004047) #14	FMNL2 (ENSMODG00000004138) #15	PRPF40A (ENSMODG00000004179) #16	ARL6IP6 (ENSMODG00000004186) #17	RPRM (ENSMODG00000044197) #18	ENSMODG00000044092	ENSMODG00000040499 #19	GALNT13 (ENSMODG00000004227) #19	ENSMODG00000041559	ENSMODG00000044766	ENSMODG00000029178	ENSMODG00000043495	KCNJ3 (ENSMODG00000004238) #20	ENSMODG00000048202	NR4A2 (ENSMODG00000004298) #21	GPD2 (ENSMODG00000004343) #22	GALNT5 (ENSMODG00000004371) #23	ERMN (ENSMODG00000048152) #24	CYTIP (ENSMODG00000004389) #25	ACVR1C (ENSMODG00000004411) #26	ACVR1 (ENSMODG00000004431) #27	UPP2 (ENSMODG00000004449) #28	CCDC148 (ENSMODG00000004460) #29	ENSMODG00000004479 #31	ENSMODG00000028615	DAPL1 (ENSMODG00000044467) #32	TANC1 (ENSMODG00000004491) #33	WDSUB1 (ENSMODG00000004957) #34	BAZ2B (ENSMODG00000005005) #35	MARCHF7 (ENSMODG00000005032) #36	CD302 (ENSMODG00000047540) #37
Platypus	MODERN SPECIES	20	MMADHC (ENSOANG00000006072)	RND3 (ENSOANG00000038274)	ENSOANG00000006075 ##7	TNFAIP6 (ENSOANG00000037517) #9	RIF1 (ENSOANG00000006078) #10	NEB (ENSOANG00000006081) #11	ARL5A (ENSOANG00000046299) #12	CACNB4 (ENSOANG00000006106) #13	STAM2 (ENSOANG00000012041) #14	FMNL2 (ENSOANG00000006108) #15	PRPF40A (ENSOANG00000006113) #16	ARL6IP6 (ENSOANG00000044701) #17	GALNT13 (ENSOANG00000006116) #19	KCNJ3 (ENSOANG00000038534) #20	NR4A2 (ENSOANG00000006120) #21	GPD2 (ENSOANG00000006122) #22	GALNT5 (ENSOANG00000006126) #23	ERMN (ENSOANG00000042538) #24	CYTIP (ENSOANG00000006129) #25	ACVR1C (ENSOANG00000006133) #26	ACVR1 (ENSOANG00000006134) #27	CCDC148 (ENSOANG00000006135) #29	PKP4 (ENSOANG00000006136) #31	DAPL1 (ENSOANG00000006142) #32	TANC1 (ENSOANG00000006143) #33	WDSUB1 (ENSOANG00000006145) #34	ENSOANG00000044979 #35	ENSOANG00000006146 #35	MARCHF7 (ENSOANG00000006153) #36	CD302 (ENSOANG00000048417) #37	LY75 (ENSOANG00000006154) ##37
Sauria	ANCESTRAL SPECIES		ENSGT00530000063686.a.b #7	ENSGT00530000063686.a.a ##7	ENSGT00940000157201 #9	ENSGT00390000012204 #10	ENSGT00940000154533.b.d #11	ENSGT00940000154714 #12	ENSGT00950000182837.b.b #13	ENSGT00940000157055 #14	ENSGT00940000155515.a.b.b #15	ENSGT00930000150980.a #16	ENSGT00390000009987 #17	ENSGT00390000010523.c.b #18	ENSGT00940000158904 #19	ENSGT01080000257365.b.a.a.b.a #20	ENSGT00950000183038.a.b.b.b #21	ENSGT00390000001718 #22	ENSGT00940000159241 #23	ENSGT01090000260082.d.a.a.a.b #24	ENSGT00530000063734.a #25	ENSGT00940000158842 #26	ENSGT00940000160160 #27	ENSGT00940000161094 #28	ENSGT00940000153988.A #29	ENSGT00940000155773.b #31	ENSGT00940000154574.d #32	ENSGT00940000155655.B #33	ENSGT00940000157230 #34	ENSGT00940000155359 #35	ENSGT00940000179573	ENSGT00530000063836.a #36	ENSGT01050000244842.a.b.a #37
Archelosauria	ANCESTRAL SPECIES	8	ENSGT00530000063686.a.b #7	ENSGT00530000063686.a.a ##7	ENSGT00940000157201 #9	ENSGT00390000012204 #10	ENSGT00940000154533.b.d #11	ENSGT00940000154714 #12	ENSGT00950000182837.b.b #13	ENSGT00940000157055 #14	ENSGT00940000155515.a.b.b #15	ENSGT00930000150980.a #16	ENSGT00390000009987 #17	ENSGT00390000010523.c.b #18	ENSGT00940000158904 #19	ENSGT01080000257365.b.a.a.b.a #20	ENSGT00950000183038.a.b.b.b #21	ENSGT00390000001718 #22	ENSGT00940000159241 #23	ENSGT01090000260082.d.a.a.a.b #24	ENSGT00530000063734.a #25	ENSGT01010000223933	ENSGT00940000158842 #26	ENSGT00940000160160 #27	ENSGT00940000161094 #28	ENSGT00940000153988.A #29	ENSGT00940000155773.b #31	ENSGT00940000154574.d #32	ENSGT00960000190136	ENSGT00940000155655.B #33	ENSGT00940000157230 #34	ENSGT00940000155359 #35	ENSGT00530000063836.a #36
Archosauria	ANCESTRAL SPECIES	6	ENSGT00940000157541	ENSGT00530000063686.a.b #7	ENSGT00530000063686.a.a ##7	ENSGT00940000157201 #9	ENSGT00390000012204 #10	ENSGT00940000154533.b.d #11	ENSGT00940000154714 #12	ENSGT00950000182837.b.b #13	ENSGT00940000157055 #14	ENSGT00940000155515.a.b.b #15	ENSGT00930000150980.a #16	ENSGT00390000010523.c.b #18	ENSGT00940000158904 #19	ENSGT01080000257365.b.a.a.b.a #20	ENSGT00950000183038.a.b.b.b #21	ENSGT00390000001718 #22	ENSGT00940000159241 #23	ENSGT01090000260082.d.a.a.a.b #24	ENSGT00530000063734.a #25	ENSGT01010000223933	ENSGT00940000158842 #26	ENSGT00940000160160 #27	ENSGT00940000161094 #28	ENSGT00940000153988.A #29	ENSGT00940000155773.b #31	ENSGT00940000154574.d #32	ENSGT00960000190136	ENSGT00940000155655.B #33	ENSGT00940000157230 #34	ENSGT00940000155359 #35	ENSGT00530000063836.a #36
Aves	ANCESTRAL SPECIES	8	ENSGT00940000157541	ENSGT00530000063686.a.b #7	ENSGT00530000063686.a.a ##7	ENSGT00940000157201 #9	ENSGT00390000012204 #10	ENSGT00940000154533.b.d #11	ENSGT00940000154714 #12	ENSGT00950000182837.b.b #13	ENSGT00940000157055 #14	ENSGT00940000155515.a.b.b #15	ENSGT00930000150980.a #16	ENSGT00390000010523.c.b #18	ENSGT00940000158904 #19	ENSGT01080000257365.b.a.a.b.a #20	ENSGT00950000183038.a.b.b.b #21	ENSGT00390000001718 #22	ENSGT00940000159241 #23	ENSGT01090000260082.d.a.a.a.b #24	ENSGT00530000063734.a #25	ENSGT01010000223933	ENSGT00940000158842 #26	ENSGT00940000160160 #27	ENSGT00940000161094 #28	ENSGT00940000153988.A #29	ENSGT00940000155773.b #31	ENSGT00940000154574.d #32	ENSGT00940000155655.B #33	ENSGT00940000157230 #34	ENSGT00940000155359 #35	ENSGT00530000063836.a #36
Neognathae	ANCESTRAL SPECIES	6	ENSGT00940000157541	ENSGT00530000063686.a.b #7	ENSGT00530000063686.a.a ##7	ENSGT00940000157201 #9	ENSGT00390000012204 #10	ENSGT00940000154533.b.d #11	ENSGT00940000154714 #12	ENSGT00950000182837.b.b #13	ENSGT00940000157055 #14	ENSGT00940000155515.a.b.b #15	ENSGT00930000150980.a #16	ENSGT00390000010523.c.b #18	ENSGT00940000158904 #19	ENSGT01080000257365.b.a.a.b.a #20	ENSGT00950000183038.a.b.b.b #21	ENSGT00390000001718 #22	ENSGT00940000159241 #23	ENSGT01090000260082.d.a.a.a.b #24	ENSGT00530000063734.a #25	ENSGT01010000223933	ENSGT00940000158842 #26	ENSGT00940000160160 #27	ENSGT00940000161094 #28	ENSGT00940000153988.A #29	ENSGT00940000155773.b #31	ENSGT00940000154574.d #32	ENSGT00940000155655.B #33	ENSGT00940000157230 #34	ENSGT00940000155359 #35	ENSGT00530000063836.a #36
Neognathae_b	ANCESTRAL SPECIES	7	ENSGT00940000157541	ENSGT00530000063686.a.b #7	ENSGT00530000063686.a.a ##7	ENSGT00940000157201 #9	ENSGT00390000012204 #10	ENSGT00940000154533.b.d #11	ENSGT00940000154714 #12	ENSGT00950000182837.b.b #13	ENSGT00940000157055 #14	ENSGT00940000155515.a.b.b #15	ENSGT00930000150980.a #16	ENSGT00390000010523.c.b #18	ENSGT00940000158904 #19	ENSGT01080000257365.b.a.a.b.a #20	ENSGT00950000183038.a.b.b.b #21	ENSGT00390000001718 #22	ENSGT00940000159241 #23	ENSGT01090000260082.d.a.a.a.b #24	ENSGT00530000063734.a #25	ENSGT01010000223933	ENSGT00940000158842 #26	ENSGT00940000160160 #27	ENSGT00940000161094 #28	ENSGT00940000153988.A #29	ENSGT00940000155773.b #31	ENSGT00940000154574.d #32	ENSGT00940000155655.B #33	ENSGT00940000157230 #34	ENSGT00940000155359 #35	ENSGT00530000063836.a #36
Neognathae_c	ANCESTRAL SPECIES	9	ENSGT00940000157541	ENSGT00530000063686.a.b #7	ENSGT00530000063686.a.a ##7	ENSGT00940000157201 #9	ENSGT00390000012204 #10	ENSGT00940000154533.b.d #11	ENSGT00940000154714 #12	ENSGT00950000182837.b.b #13	ENSGT00940000157055 #14	ENSGT00940000155515.a.b.b #15	ENSGT00930000150980.a #16	ENSGT00390000010523.c.b #18	ENSGT00940000158904 #19	ENSGT01080000257365.b.a.a.b.a #20	ENSGT00950000183038.a.b.b.b #21	ENSGT00390000001718 #22	ENSGT00940000159241 #23	ENSGT01090000260082.d.a.a.a.b #24	ENSGT00530000063734.a #25	ENSGT01010000223933	ENSGT00940000158842 #26	ENSGT00940000160160 #27	ENSGT00940000161094 #28	ENSGT00940000153988.A #29	ENSGT00940000155773.b #31	ENSGT00940000154574.d #32	ENSGT00940000155655.B #33	ENSGT00940000157230 #34	ENSGT00940000155359 #35	ENSGT00530000063836.a #36
Golden eagle	MODERN SPECIES	22	RND3 (ENSACCG00020004714)	RBM43 (ENSACCG00020004722) #7	NMI (ENSACCG00020004728) ##7	TNFAIP6 (ENSACCG00020004742) #9	RIF1 (ENSACCG00020004834) #10	NEB (ENSACCG00020008753) #11	ARL5A (ENSACCG00020011953) #12	CACNB4 (ENSACCG00020012004) #13	STAM2 (ENSACCG00020012068) #14	FMNL2 (ENSACCG00020012193) #15	PRPF40A (ENSACCG00020012312) #16	RPRM (ENSACCG00020012360) #18	GALNT13 (ENSACCG00020012390) #19	KCNJ3 (ENSACCG00020012424) #20	NR4A2 (ENSACCG00020012439) #21	GPD2 (ENSACCG00020012475) #22	GALNT5 (ENSACCG00020012510) #23	ERMN (ENSACCG00020012533) #24	CYTIP (ENSACCG00020012544) #25	ACVR1C (ENSACCG00020012594) #26	ACVR1 (ENSACCG00020012670) #27	UPP2 (ENSACCG00020012695) #28	CCDC148 (ENSACCG00020012727) #29	PKP4 (ENSACCG00020012778) #31	ENSACCG00020012830	TANC1 (ENSACCG00020012885) #33	WDSUB1 (ENSACCG00020012956) #34	BAZ2B (ENSACCG00020014362) #35	MARCHF7 (ENSACCG00020015468) #36
Kakapo	MODERN SPECIES	22	RND3 (ENSSHBG00005017805)	RBM43 (ENSSHBG00005017793) #7	NMI (ENSSHBG00005017783) ##7	TNFAIP6 (ENSSHBG00005017775) #9	RIF1 (ENSSHBG00005017612) #10	NEB (ENSSHBG00005017527) #11	ARL5A (ENSSHBG00005017513) #12	CACNB4 (ENSSHBG00005017507) #13	STAM2 (ENSSHBG00005017498) #14	FMNL2 (ENSSHBG00005017491) #15	PRPF40A (ENSSHBG00005013368) #16	RPRM (ENSSHBG00005012981) #18	GALNT13 (ENSSHBG00005012937) #19	KCNJ3 (ENSSHBG00005012922) #20	NR4A2 (ENSSHBG00005012900) #21	GPD2 (ENSSHBG00005012863) #22	GALNT5 (ENSSHBG00005012831) #23	CYTIP (ENSSHBG00005012812) #25	ENSSHBG00005012797	ACVR1C (ENSSHBG00005012735) #26	ACVR1 (ENSSHBG00005012706) #27	UPP2 (ENSSHBG00005012682) #28	CCDC148 (ENSSHBG00005012608) #29	PKP4 (ENSSHBG00005012566) #31	DAPL1 (ENSSHBG00005012539) #32	TANC1 (ENSSHBG00005012165) #33	WDSUB1 (ENSSHBG00005012030) #34	BAZ2B (ENSSHBG00005005153) #35	MARCHF7 (ENSSHBG00005004988) #36	RNLS (ENSSHBG00005004973)	PTEN (ENSSHBG00005019622)
Passeriformes	ANCESTRAL SPECIES	6	ENSGT00530000063686.a.b #7	ENSGT00530000063686.a.a ##7	ENSGT00940000157201 #9	ENSGT00390000012204 #10	ENSGT00940000154533.b.d #11	ENSGT00940000154714 #12	ENSGT00950000182837.b.b #13	ENSGT00940000157055 #14	ENSGT00940000155515.a.b.b #15	ENSGT00930000150980.a #16	ENSGT00390000010523.c.b #18	ENSGT00940000158904 #19	ENSGT01080000257365.b.a.a.b.a.b #20	ENSGT01080000257365.b.a.a.b.a.a #20	ENSGT00950000183038.a.b.b.b #21	ENSGT00390000001718 #22	ENSGT00940000159241 #23	ENSGT01090000260082.d.a.a.a.b #24	ENSGT00530000063734.a #25	ENSGT00940000158842 #26	ENSGT00940000160160 #27	ENSGT00940000161094 #28	ENSGT00940000153988.A #29	ENSGT00940000155773.b #31	ENSGT00940000154574.d #32	ENSGT00940000155655.B #33	ENSGT00940000157230 #34	ENSGT00940000155359 #35	ENSGT00530000063836.a #36
Passeriformes_d	ANCESTRAL SPECIES	8	ENSGT00530000063686.a.b #7	ENSGT00530000063686.a.a ##7	ENSGT00940000157201 #9	ENSGT00390000012204 #10	ENSGT00940000154533.b.d #11	ENSGT00940000154714 #12	ENSGT00950000182837.b.b #13	ENSGT00940000157055 #14	ENSGT00940000155515.a.b.b #15	ENSGT00930000150980.a #16	ENSGT00390000010523.c.b #18	ENSGT00940000158904 #19	ENSGT01080000257365.b.a.a.b.a.b #20	ENSGT01080000257365.b.a.a.b.a.a #20	ENSGT00950000183038.a.b.b.b #21	ENSGT00390000001718 #22	ENSGT00940000159241 #23	ENSGT01090000260082.d.a.a.a.b #24	ENSGT00530000063734.a #25	ENSGT00940000158842 #26	ENSGT00940000160160 #27	ENSGT00940000161094 #28	ENSGT00940000153988.A #29	ENSGT00940000155773.b #31	ENSGT00940000154574.d #32	ENSGT00940000155655.B #33	ENSGT00940000157230 #34	ENSGT00940000155359 #35	ENSGT00530000063836.a #36
Passeriformes_g	ANCESTRAL SPECIES	9	ENSGT00940000157541	ENSGT00530000063686.a.b #7	ENSGT00530000063686.a.a ##7	ENSGT00940000157201 #9	ENSGT00390000012204 #10	ENSGT00940000154533.b.d #11	ENSGT00940000154714 #12	ENSGT00950000182837.b.b #13	ENSGT00940000157055 #14	ENSGT00940000155515.a.b.b #15	ENSGT00930000150980.a #16	ENSGT00390000010523.c.b #18	ENSGT00940000158904 #19	ENSGT01080000257365.b.a.a.b.a.b #20	ENSGT00950000183038.a.b.b.b #21	ENSGT00390000001718 #22	ENSGT00940000159241 #23	ENSGT01090000260082.d.a.a.a.b #24	ENSGT00530000063734.a #25	ENSGT00940000158842 #26	ENSGT00940000160160 #27	ENSGT00940000161094 #28	ENSGT00940000153988.A #29	ENSGT00940000155773.b #31	ENSGT00940000154574.d #32	ENSGT00940000155655.B #33	ENSGT00940000157230 #34	ENSGT00940000155359 #35	ENSGT00530000063836.a #36
Medium ground finch	MODERN SPECIES	225														ENSGFOG00000006718 #21	ENSGFOG00000006723 #21	GPD2 (ENSGFOG00000006736) #22	GALNT5 (ENSGFOG00000006759) #23	ENSGFOG00000006765	ENSGFOG00000006771	ACVR1C (ENSGFOG00000006788) #26	ACVR1 (ENSGFOG00000006907) #27	UPP2 (ENSGFOG00000006916) #28	CCDC148 (ENSGFOG00000006930) #29	PKP4 (ENSGFOG00000006957) #31	DAPL1 (ENSGFOG00000006990) #32	TANC1 (ENSGFOG00000007013) #33	WDSUB1 (ENSGFOG00000007046) #34	BAZ2B (ENSGFOG00000007278) #35	MARCHF7 (ENSGFOG00000012051) #36
Passeroidea	ANCESTRAL SPECIES	8	ENSGT00940000157541	ENSGT00530000063686.a.b #7	ENSGT00530000063686.a.a ##7	ENSGT00940000157201 #9	ENSGT00390000012204 #10	ENSGT00940000154533.b.d #11	ENSGT00940000154714 #12	ENSGT00950000182837.b.b #13	ENSGT00940000157055 #14	ENSGT00940000155515.a.b.b #15	ENSGT00930000150980.a #16	ENSGT00390000010523.c.b #18	ENSGT00940000158904 #19	ENSGT01080000257365.b.a.a.b.a.b #20	ENSGT00950000183038.a.b.b.b #21	ENSGT00390000001718 #22	ENSGT00940000159241 #23	ENSGT01090000260082.d.a.a.a.b #24	ENSGT00530000063734.a #25	ENSGT00940000158842 #26	ENSGT00940000160160 #27	ENSGT00940000161094 #28	ENSGT00940000153988.A #29	ENSGT00940000155773.b #31	ENSGT00940000154574.d #32	ENSGT00940000155655.B #33	ENSGT00940000157230 #34	ENSGT00940000155359 #35	ENSGT00530000063836.a #36
Zebra finch	MODERN SPECIES	29	RBM43 (ENSTGUG00000011995) #7	NMI (ENSTGUG00000011996) ##7	TNFAIP6 (ENSTGUG00000012000) #9	NEB (ENSTGUG00000012003) #11	ARL5A (ENSTGUG00000024176) #12	CACNB4 (ENSTGUG00000025861) #13	ENSTGUG00000024126	STAM2 (ENSTGUG00000012089) #14	FMNL2 (ENSTGUG00000012102) #15	PRPF40A (ENSTGUG00000012118) #16	RPRM (ENSTGUG00000024849) #18	GALNT13 (ENSTGUG00000012138) #19	KCNJ3 (ENSTGUG00000029345) #20	ENSTGUG00000026561	NR4A2 (ENSTGUG00000012173) #21	GPD2 (ENSTGUG00000012157) #22	GALNT5 (ENSTGUG00000022723) #23	ERMN (ENSTGUG00000029473) #24	CYTIP (ENSTGUG00000016854) #25	ACVR1C (ENSTGUG00000028213) #26	ACVR1 (ENSTGUG00000012182) #27	UPP2 (ENSTGUG00000012193) #28	CCDC148 (ENSTGUG00000012199) #29	PKP4 (ENSTGUG00000012202) #31	DAPL1 (ENSTGUG00000012210) #32	TANC1 (ENSTGUG00000012212) #33	WDSUB1 (ENSTGUG00000012224) #34	BAZ2B (ENSTGUG00000012233) #35	MARCHF7 (ENSTGUG00000012253) #36
Common canary	MODERN SPECIES	8	ENSSCAG00000008066	RBM43 (ENSSCAG00000008064) #7	NMI (ENSSCAG00000008060) ##7	TNFAIP6 (ENSSCAG00000008054) #9	RIF1 (ENSSCAG00000007793) #10	NEB (ENSSCAG00000005308) #11	ARL5A (ENSSCAG00000004911) #12	CACNB4 (ENSSCAG00000004889) #13	STAM2 (ENSSCAG00000004872) #14	FMNL2 (ENSSCAG00000004864) #15	PRPF40A (ENSSCAG00000004834) #16	ENSSCAG00000004826 #19	ENSSCAG00000004822 #19	ENSSCAG00000004814 #21	ENSSCAG00000004811 #21	GPD2 (ENSSCAG00000004804) #22	GALNT5 (ENSSCAG00000004784) #23	CYTIP (ENSSCAG00000004723) #25	ACVR1C (ENSSCAG00000004676) #26	ACVR1 (ENSSCAG00000004646) #27	UPP2 (ENSSCAG00000004632) #28	CCDC148 (ENSSCAG00000004626) #29	ENSSCAG00000004624 #31	ENSSCAG00000004617 #31	DAPL1 (ENSSCAG00000004609) #32	TANC1 (ENSSCAG00000004584) #33	WDSUB1 (ENSSCAG00000004569) #34	ENSSCAG00000004560 #35	ENSSCAG00000004552 #35	MARCHF7 (ENSSCAG00000004550) #36
Flycatcher	MODERN SPECIES	26	TNFAIP6 (ENSFALG00000013873) #9	RIF1 (ENSFALG00000013874) #10	NEB (ENSFALG00000013894) #11	ARL5A (ENSFALG00000023620) #12	CACNB4 (ENSFALG00000013909) #13	STAM2 (ENSFALG00000013920) #14	FMNL2 (ENSFALG00000013923) #15	ENSFALG00000025688	PRPF40A (ENSFALG00000013930) #16	RPRM (ENSFALG00000027840) #18	GALNT13 (ENSFALG00000013944) #19	KCNJ3 (ENSFALG00000013952) #20	NR4A2 (ENSFALG00000013954) #21	ENSFALG00000026419	ENSFALG00000025968	GPD2 (ENSFALG00000003038) #22	GALNT5 (ENSFALG00000003045) #23	ACVR1C (ENSFALG00000003064) #26	ACVR1 (ENSFALG00000003085) #27	UPP2 (ENSFALG00000028218) #28	CCDC148 (ENSFALG00000003110) #29	ENSFALG00000024668 #31	ENSFALG00000003128 #31	ENSFALG00000027803	TANC1 (ENSFALG00000003187) #33	WDSUB1 (ENSFALG00000023563) #34	BAZ2B (ENSFALG00000003242) #35	MARCHF7 (ENSFALG00000003263) #36
Great tit	MODERN SPECIES	27	TNFAIP6 (ENSPMJG00000020005) #9	RIF1 (ENSPMJG00000020006) #10	NEB (ENSPMJG00000020007) #11	ARL5A (ENSPMJG00000000061) #12	CACNB4 (ENSPMJG00000000088) #13	STAM2 (ENSPMJG00000000177) #14	FMNL2 (ENSPMJG00000000755) #15	PRPF40A (ENSPMJG00000002878) #16	ENSPMJG00000004518	GALNT13 (ENSPMJG00000004522) #19	KCNJ3 (ENSPMJG00000004535) #20	ENSPMJG00000004541	ENSPMJG00000004575	ENSPMJG00000004578 #21	ENSPMJG00000004579 #21	GPD2 (ENSPMJG00000004596) #22	GALNT5 (ENSPMJG00000004602) #23	CYTIP (ENSPMJG00000004614) #25	ACVR1C (ENSPMJG00000004622) #26	ACVR1 (ENSPMJG00000004638) #27	UPP2 (ENSPMJG00000004650) #28	CCDC148 (ENSPMJG00000004651) #29	PKP4 (ENSPMJG00000004657) #31	TANC1 (ENSPMJG00000004660) #33	WDSUB1 (ENSPMJG00000004694) #34	BAZ2B (ENSPMJG00000004742) #35	MARCHF7 (ENSPMJG00000009895) #36
Galloanserae	ANCESTRAL SPECIES	7	ENSGT00940000157541	ENSGT00530000063686.a.b #7	ENSGT00530000063686.a.a ##7	ENSGT00940000157201 #9	ENSGT00390000012204 #10	ENSGT00940000154533.b.d #11	ENSGT00940000154714 #12	ENSGT00950000182837.b.b #13	ENSGT00940000157055 #14	ENSGT00940000155515.a.b.b #15	ENSGT00930000150980.a #16	ENSGT00390000010523.c.b #18	ENSGT00940000158904 #19	ENSGT01080000257365.b.a.a.b.a #20	ENSGT00950000183038.a.b.b.b #21	ENSGT00390000001718 #22	ENSGT00940000159241 #23	ENSGT01090000260082.d.a.a.a.b #24	ENSGT00530000063734.a #25	ENSGT00940000158842 #26	ENSGT00940000160160 #27	ENSGT00940000161094 #28	ENSGT00940000153988.A #29	ENSGT00940000155773.b #31	ENSGT00940000154574.d #32	ENSGT00940000155655.B #33	ENSGT00940000157230 #34	ENSGT00940000155359 #35	ENSGT00530000063836.a #36	ENSGT00550000075046
Anatidae	ANCESTRAL SPECIES	37	ENSGT00940000157541	ENSGT00530000063686.a.b #7	ENSGT00530000063686.a.a ##7	ENSGT00940000157201 #9	ENSGT00390000012204 #10	ENSGT00940000154533.b.d.s #11	ENSGT00940000154714 #12	ENSGT00950000182837.b.b #13	ENSGT00940000157055 #14	ENSGT00940000155515.a.b.b #15	ENSGT00930000150980.a #16	ENSGT00390000010523.c.b #18	ENSGT00940000158904 #19	ENSGT01080000257365.b.a.a.b.a #20	ENSGT00950000183038.a.b.b.b.f #21	ENSGT00390000001718 #22	ENSGT00940000159241 #23	ENSGT00960000191069	ENSGT00530000063734.a #25	ENSGT00940000158842 #26	ENSGT00940000160160 #27	ENSGT00940000161094 #28	ENSGT00940000153988.A #29	ENSGT00940000155773.b #31	ENSGT00940000154574.d #32	ENSGT00940000155655.B #33	ENSGT00940000157230 #34	ENSGT00940000155359 #35	ENSGT00530000063836.a #36	ENSGT00550000075046
Pink-footed goose	MODERN SPECIES	232											FMNL2 (ENSABRG00000018225) #15	PRPF40A (ENSABRG00000018200) #16	RPRM (ENSABRG00000018197) #18	GALNT13 (ENSABRG00000018182) #19	NR4A2 (ENSABRG00000018157) #21	GPD2 (ENSABRG00000018142) #22	GALNT5 (ENSABRG00000018131) #23	ENSABRG00000018128	CYTIP (ENSABRG00000018126) #25	ACVR1C (ENSABRG00000018121) #26	ACVR1 (ENSABRG00000018114) #27
Duck	MODERN SPECIES	25	ESYT3 (ENSAPLG00000009458)	CEP70 (ENSAPLG00000009891)	FAIM (ENSAPLG00000010169)	PARP9 (ENSAPLG00000010291)	DTX3L (ENSAPLG00000031101)	ENSAPLG00000010410	ANKZF1 (ENSAPLG00000010753)	ATG9A (ENSAPLG00000010993)	ABCB6 (ENSAPLG00000011094)	ZFAND2B (ENSAPLG00000021109)	ENSAPLG00000012094	CNPPD1 (ENSAPLG00000023186)	ENSAPLG00000021175	IHH (ENSAPLG00000027890)	ENSAPLG00000019403 #21	GPD2 (ENSAPLG00000010646) #22	GALNT5 (ENSAPLG00000010565) #23	ENSAPLG00000027196	CYTIP (ENSAPLG00000010293) #25	ACVR1C (ENSAPLG00000005547) #26	ACVR1 (ENSAPLG00000004767) #27	UPP2 (ENSAPLG00000004498) #28	CCDC148 (ENSAPLG00000004224) #29	PKP4 (ENSAPLG00000003306) #31	DAPL1 (ENSAPLG00000003302) #32	TANC1 (ENSAPLG00000002937) #33	WDSUB1 (ENSAPLG00000002463) #34	BAZ2B (ENSAPLG00000015688) #35	MARCHF7 (ENSAPLG00000015604) #36
Phasianidae	ANCESTRAL SPECIES	8	ENSGT00940000157541	ENSGT00530000063686.a.b #7	ENSGT00530000063686.a.a ##7	ENSGT00940000157201 #9	ENSGT00390000012204 #10	ENSGT00940000154533.b.d #11	ENSGT00940000154714 #12	ENSGT00950000182837.b.b #13	ENSGT00940000157055 #14	ENSGT00940000155515.a.b.b #15	ENSGT00930000150980.a #16	ENSGT00390000010523.c.b #18	ENSGT00940000158904 #19	ENSGT01080000257365.b.a.a.b.a #20	ENSGT00950000183038.a.b.b.b #21	ENSGT00390000001718 #22	ENSGT00940000159241 #23	ENSGT01090000260082.d.a.a.a.b #24	ENSGT00530000063734.a #25	ENSGT00940000158842 #26	ENSGT00940000160160 #27	ENSGT00940000161094 #28	ENSGT00940000153988.A #29	ENSGT00940000155773.b #31	ENSGT00940000155655.B #33	ENSGT00940000157230 #34	ENSGT00940000155359 #35	ENSGT00530000063836.a #36	ENSGT00550000075046
Phasianidae_b	ANCESTRAL SPECIES	8	ENSGT00940000157541	ENSGT00530000063686.a.b #7	ENSGT00530000063686.a.a ##7	ENSGT00940000157201 #9	ENSGT00390000012204 #10	ENSGT00940000154533.b.d #11	ENSGT00940000154714 #12	ENSGT00950000182837.b.b #13	ENSGT00940000157055 #14	ENSGT00940000155515.a.b.b #15	ENSGT00930000150980.a #16	ENSGT00390000010523.c.b #18	ENSGT00940000158904 #19	ENSGT01080000257365.b.a.a.b.a #20	ENSGT00950000183038.a.b.b.b #21	ENSGT00390000001718 #22	ENSGT00940000159241 #23	ENSGT01090000260082.d.a.a.a.b #24	ENSGT00530000063734.a #25	ENSGT00940000158842 #26	ENSGT00940000160160 #27	ENSGT00940000161094 #28	ENSGT00940000153988.A #29	ENSGT00940000155773.b #31	ENSGT00940000155655.B #33	ENSGT00940000157230 #34	ENSGT00940000155359 #35	ENSGT00530000063836.a #36	ENSGT00550000075046
Turkey	DUPLICATION
Turkey	MODERN SPECIES	27	ENSMGAG00000018309	ENSMGAG00000008673 #36	ENSMGAG00000019441	ENSMGAG00000017576 #35	ENSMGAG00000012953 #35	ENSMGAG00000012945 #33	ENSMGAG00000012950 #34	ENSMGAG00000021091	PKP4 (ENSMGAG00000012908) #31	ENSMGAG00000012922 #29	ENSMGAG00000012901 #28	ACVR1 (ENSMGAG00000012891) #27	ENSMGAG00000012933 #25	ENSMGAG00000012880 #26	GALNT5 (ENSMGAG00000012929) #23	ENSMGAG00000012868 #22	ENSMGAG00000022185 #22	ENSMGAG00000020589 #21	ENSMGAG00000012861 #20	ENSMGAG00000020554 #19	ENSMGAG00000022546 #19	ENSMGAG00000018740 #19	ENSMGAG00000012826 #15	ENSMGAG00000012843 #16	STAM2 (ENSMGAG00000012813) #14	ENSMGAG00000012799 #13	ENSMGAG00000012795 #12	ENSMGAG00000012782 #11	ENSMGAG00000012743 #11	ENSMGAG00000019364 #11	ENSMGAG00000022891 #11
Turkey	MODERN SPECIES	27	ENSMGAG00000008673 #36	ENSMGAG00000019441	ENSMGAG00000017576 #35	ENSMGAG00000012953 #35	ENSMGAG00000012945 #33	ENSMGAG00000012950 #34	ENSMGAG00000021091	PKP4 (ENSMGAG00000012908) #31	ENSMGAG00000012922 #29	ENSMGAG00000012901 #28	ACVR1 (ENSMGAG00000012891) #27	ENSMGAG00000012933 #25	ENSMGAG00000012880 #26	GALNT5 (ENSMGAG00000012929) #23	ENSMGAG00000012868 #22	ENSMGAG00000022185 #22	ENSMGAG00000020589 #21	ENSMGAG00000012861 #20	ENSMGAG00000020554 #19	ENSMGAG00000022546 #19	ENSMGAG00000018740 #19	ENSMGAG00000012826 #15	ENSMGAG00000012843 #16	STAM2 (ENSMGAG00000012813) #14	ENSMGAG00000012799 #13	ENSMGAG00000012795 #12	ENSMGAG00000012782 #11	ENSMGAG00000012743 #11	ENSMGAG00000019364 #11	ENSMGAG00000022891 #11	ENSMGAG00000017715 #11
Chicken	MODERN SPECIES	36	RBM43 (ENSGALG00010009690) #7	NMI (ENSGALG00010009731) ##7	TNFAIP6 (ENSGALG00010009793) #9	RIF1 (ENSGALG00010009850) #10	ENSGALG00010010115 #11	ENSGALG00010010195 #11	ARL5A (ENSGALG00010010205) #12	CACNB4 (ENSGALG00010010255) #13	STAM2 (ENSGALG00010010287) #14	FMNL2 (ENSGALG00010010336) #15	PRPF40A (ENSGALG00010010386) #16	RPRM (ENSGALG00010011002) #18	GALNT13 (ENSGALG00010010448) #19	KCNJ3 (ENSGALG00010010471) #20	NR4A2 (ENSGALG00010010499) #21	GPD2 (ENSGALG00010010528) #22	ENSGALG00010011007 #23	ENSGALG00010010544 #23	ERMN (ENSGALG00010010567) #24	CYTIP (ENSGALG00010010586) #25	ACVR1C (ENSGALG00010010638) #26	ATVR1 (ENSGALG00010010745) #27	UPP2 (ENSGALG00010010778) #28	CCDC148 (ENSGALG00010010784) #29	PKP4 (ENSGALG00010010824) #31	TANC1 (ENSGALG00010010917) #33	WDSUB1 (ENSGALG00010010943) #34	BAZ2B (ENSGALG00010010965) #35	MARCH7 (ENSGALG00010010987) #36	NAA20 (ENSGALG00010010994)
Japanese quail	MODERN SPECIES	25	RND3 (ENSCJPG00005020670)	RBM43 (ENSCJPG00005020668) #7	NMI (ENSCJPG00005020666) ##7	TNFAIP6 (ENSCJPG00005020664) #9	RIF1 (ENSCJPG00005020659) #10	ENSCJPG00005020515 #11	ARL5A (ENSCJPG00005020514) #12	CACNB4 (ENSCJPG00005020513) #13	STAM2 (ENSCJPG00005020512) #14	FMNL2 (ENSCJPG00005020511) #15	PRPF40A (ENSCJPG00005020508) #16	RPRM (ENSCJPG00005020506) #18	GALNT13 (ENSCJPG00005020504) #19	KCNJ3 (ENSCJPG00005020503) #20	NR4A2 (ENSCJPG00005020500) #21	GPD2 (ENSCJPG00005020499) #22	ENSCJPG00005020498 #23	ENSCJPG00005020497 #23	ENSCJPG00005020496 #24	CYTIP (ENSCJPG00005020495) #25	ACVR1C (ENSCJPG00005020494) #26	ACVR1 (ENSCJPG00005020493) #27	KYNU (ENSCJPG00005020492)	ENSCJPG00005020490	LRP1B (ENSCJPG00005020489)	ENSCJPG00005020487	ENSCJPG00005020483	ENSCJPG00005020482	NXPH2 (ENSCJPG00005020480)	SPOPL (ENSCJPG00005020479)	HNMT (ENSCJPG00005020477)
African ostrich	MODERN SPECIES	319	NMI (ENSSCUG00000003597) ##7	TNFAIP6 (ENSSCUG00000003603) #9	RIF1 (ENSSCUG00000003638) #10	NEB (ENSSCUG00000003691) #11	ARL5A (ENSSCUG00000003706) #12	CACNB4 (ENSSCUG00000003713) #13	STAM2 (ENSSCUG00000003717) #14	FMNL2 (ENSSCUG00000003723) #15	PRPF40A (ENSSCUG00000003728) #16	ENSSCUG00000003733	ENSSCUG00000003735	GALNT13 (ENSSCUG00000003741) #19	KCNJ3 (ENSSCUG00000003749) #20	ENSSCUG00000003280 #21	ENSSCUG00000003282 #21	GPD2 (ENSSCUG00000003285) #22	ENSSCUG00000003292 #23	ENSSCUG00000003294	CYTIP (ENSSCUG00000003296) #25	ACVR1C (ENSSCUG00000003297) #26	ACVR1 (ENSSCUG00000003298) #27	CCDC148 (ENSSCUG00000003300) #29	PKP4 (ENSSCUG00000003308) #31	TANC1 (ENSSCUG00000003334) #33	ENSSCUG00000003356	WDSUB1 (ENSSCUG00000003357) #34	BAZ2B (ENSSCUG00000003378) #35
Australian saltwater crocodile	MODERN SPECIES	66	RBM43 (ENSCPRG00005008350) #7	NMI (ENSCPRG00005008353) ##7	TNFAIP6 (ENSCPRG00005008363) #9	RIF1 (ENSCPRG00005008380) #10	ENSCPRG00005008458 #11	ENSCPRG00005008539 #11	ARL5A (ENSCPRG00005008551) #12	CACNB4 (ENSCPRG00005008584) #13	STAM2 (ENSCPRG00005008747) #14	FMNL2 (ENSCPRG00005008762) #15	PRPF40A (ENSCPRG00005008786) #16	ARL6IP6 (ENSCPRG00005008806) #17	GALNT13 (ENSCPRG00005008830) #19	KCNJ3 (ENSCPRG00005008883) #20	NR4A2 (ENSCPRG00005008903) #21	GPD2 (ENSCPRG00005008911) #22	ENSCPRG00005008934	GALNT5 (ENSCPRG00005008951) #23	ERMN (ENSCPRG00005008954) #24	ENSCPRG00005008959	ACVR1C (ENSCPRG00005008976) #26	ACVR1 (ENSCPRG00005008980) #27	UPP2 (ENSCPRG00005008995) #28	CCDC148 (ENSCPRG00005009004) #29	PKP4 (ENSCPRG00005009023) #31	DAPL1 (ENSCPRG00005009038) #32	TANC1 (ENSCPRG00005009124) #33	ENSCPRG00005009844	WDSUB1 (ENSCPRG00005009848) #34	BAZ2B (ENSCPRG00005009854) #35	MARCHF7 (ENSCPRG00005009891) #36
Cryptodira	ANCESTRAL SPECIES	5	ENSGT00530000063686.a.b #7	ENSGT00530000063686.a.a ##7	ENSGT00940000157201 #9	ENSGT00390000012204 #10	ENSGT00940000154533.b.d #11	ENSGT00940000154714 #12	ENSGT00950000182837.b.b #13	ENSGT00940000157055 #14	ENSGT00940000155515.a.b.b #15	ENSGT00930000150980.a #16	ENSGT00390000009987 #17	ENSGT00390000010523.c.b #18	ENSGT00940000158904 #19	ENSGT01080000257365.b.a.a.b.a #20	ENSGT00950000183038.a.b.b.b #21	ENSGT00390000001718 #22	ENSGT00940000159241 #23	ENSGT01090000260082.d.a.a.a.b #24	ENSGT00530000063734.a #25	ENSGT01010000223933	ENSGT00940000158842 #26	ENSGT00940000160160 #27	ENSGT00940000161094 #28	ENSGT00940000153988.A #29	ENSGT00940000155773.b #31	ENSGT00940000154574.d #32	ENSGT00960000190136	ENSGT00940000155655.B #33	ENSGT00940000157230 #34	ENSGT00940000155359 #35	ENSGT00530000063836.a #36
Testudinoidea	ANCESTRAL SPECIES	11	ENSGT00530000063686.a.b #7	ENSGT00530000063686.a.a ##7	ENSGT00940000157201 #9	ENSGT00390000012204 #10	ENSGT00940000154533.b.d #11	ENSGT00940000154714 #12	ENSGT00950000182837.b.b #13	ENSGT00940000157055 #14	ENSGT00940000155515.a.b.b #15	ENSGT00930000150980.a #16	ENSGT00390000009987 #17	ENSGT00390000010523.c.b #18	ENSGT00940000158904 #19	ENSGT01080000257365.b.a.a.b.a #20	ENSGT00950000183038.a.b.b.b #21	ENSGT00390000001718 #22	ENSGT00940000159241 #23	ENSGT01090000260082.d.a.a.a.b #24	ENSGT00530000063734.a #25	ENSGT01010000223933	ENSGT00940000158842 #26	ENSGT00940000160160 #27	ENSGT00940000161094 #28	ENSGT00940000153988.A #29	ENSGT00940000155773.b #31	ENSGT00940000154574.d #32	ENSGT00960000190136	ENSGT00940000155655.B #33	ENSGT00940000157230 #34	ENSGT00940000155359 #35	ENSGT00530000063836.a #36
Emydidae	ANCESTRAL SPECIES	4	ENSGT00530000063686.a.b #7	ENSGT00530000063686.a.a ##7	ENSGT00940000157201 #9	ENSGT00390000012204 #10	ENSGT00940000154533.b.d #11	ENSGT00940000154714 #12	ENSGT00950000182837.b.b #13	ENSGT00940000157055 #14	ENSGT00940000155515.a.b.b #15	ENSGT00930000150980.a #16	ENSGT00390000009987 #17	ENSGT00390000010523.c.b #18	ENSGT00940000158904 #19	ENSGT01080000257365.b.a.a.b.a #20	ENSGT00950000183038.a.b.b.b #21	ENSGT00390000001718 #22	ENSGT00940000159241 #23	ENSGT01090000260082.d.a.a.a.b #24	ENSGT00530000063734.a #25	ENSGT00940000158842 #26	ENSGT00940000160160 #27	ENSGT00940000161094 #28	ENSGT00940000153988.A #29	ENSGT00940000155773.b #31	ENSGT00940000154574.d #32	ENSGT00960000190136	ENSGT00940000155655.B #33	ENSGT00940000157230 #34	ENSGT00940000155359 #35	ENSGT00530000063836.a #36	ENSGT01050000244842.a.b.a #37
painted turtle	MODERN SPECIES	2363	GNAT3 (ENSCPBG00000026706)	CD36 (ENSCPBG00000026703)	SEMA3C (ENSCPBG00000026700)	HGF (ENSCPBG00000026699)	CACNA2D1 (ENSCPBG00000026696)	PCLO (ENSCPBG00000026686)	ENSCPBG00000026666	ENSCPBG00000026660	ENSCPBG00000026657	PCDH20 (ENSCPBG00000026652)	TDRD3 (ENSCPBG00000026646)	DIAPH3 (ENSCPBG00000026636)	GALNT13 (ENSCPBG00000026631) #19	ENSCPBG00000026628 #20	NR4A2 (ENSCPBG00000026617) #21	GPD2 (ENSCPBG00000026604) #22	GALNT5 (ENSCPBG00000026600) #23	ERMN (ENSCPBG00000026596) #24	CYTIP (ENSCPBG00000026594) #25	ACVR1C (ENSCPBG00000026513) #26	ACVR1 (ENSCPBG00000026496) #27	UPP2 (ENSCPBG00000026493) #28	CCDC148 (ENSCPBG00000026491) #29	ENSCPBG00000026489 #31	ENSCPBG00000026486 #31	DAPL1 (ENSCPBG00000026485) #32	ENSCPBG00000026484	TANC1 (ENSCPBG00000026483) #33	WDSUB1 (ENSCPBG00000026482) #34	BAZ2B (ENSCPBG00000026480) #35	MARCHF7 (ENSCPBG00000026479) #36
Three-toed box turtle	MODERN SPECIES	25	RND3 (ENSTMTG00000013856)	RBM43 (ENSTMTG00000013865) #7	NMI (ENSTMTG00000013868) ##7	RIF1 (ENSTMTG00000013981) #10	NEB (ENSTMTG00000016118) #11	ARL5A (ENSTMTG00000022372) #12	CACNB4 (ENSTMTG00000022421) #13	STAM2 (ENSTMTG00000022506) #14	FMNL2 (ENSTMTG00000022518) #15	PRPF40A (ENSTMTG00000022533) #16	ARL6IP6 (ENSTMTG00000022540) #17	RPRM (ENSTMTG00000022542) #18	GALNT13 (ENSTMTG00000022547) #19	KCNJ3 (ENSTMTG00000022553) #20	NR4A2 (ENSTMTG00000022554) #21	GPD2 (ENSTMTG00000022557) #22	GALNT5 (ENSTMTG00000022562) #23	ENSTMTG00000022564	ACVR1C (ENSTMTG00000022567) #26	ACVR1 (ENSTMTG00000022573) #27	UPP2 (ENSTMTG00000022576) #28	CCDC148 (ENSTMTG00000022579) #29	PKP4 (ENSTMTG00000022588) #31	DAPL1 (ENSTMTG00000022598) #32	TANC1 (ENSTMTG00000022600) #33	ENSTMTG00000022604	WDSUB1 (ENSTMTG00000022605) #34	BAZ2B (ENSTMTG00000022610) #35	MARCHF7 (ENSTMTG00000022621) #36	CD302 (ENSTMTG00000022625) #37	LY75 (ENSTMTG00000022629) ##37
Testudinidae	ANCESTRAL SPECIES	8	ENSGT00530000063686.a.b #7	ENSGT00530000063686.a.a ##7	ENSGT00940000157201 #9	ENSGT00390000012204 #10	ENSGT00940000154533.b.d #11	ENSGT00940000154714 #12	ENSGT00950000182837.b.b #13	ENSGT00940000157055 #14	ENSGT00940000155515.a.b.b #15	ENSGT00930000150980.a #16	ENSGT00390000009987 #17	ENSGT00390000010523.c.b #18	ENSGT00940000158904 #19	ENSGT01080000257365.b.a.a.b.a #20	ENSGT00950000183038.a.b.b.b #21	ENSGT00390000001718 #22	ENSGT00940000159241 #23	ENSGT00530000063734.a #25	ENSGT01010000223933	ENSGT00940000158842 #26	ENSGT00940000160160 #27	ENSGT00940000161094 #28	ENSGT00940000153988.A #29	ENSGT00940000155773.b #31	ENSGT00940000154574.d #32	ENSGT00940000155655.B #33	ENSGT00940000157230 #34	ENSGT00940000155359 #35	ENSGT00530000063836.a #36	ENSGT01050000244842.a.b.a #37	ENSGT01050000244842.a.b.b.a.a.a ##37
Goode s thornscrub tortoise	MODERN SPECIES	2	NMI (ENSGEVG00005020889) ##7	TNFAIP6 (ENSGEVG00005020884) #9	RIF1 (ENSGEVG00005020864) #10	NEB (ENSGEVG00005020817) #11	ARL5A (ENSGEVG00005020782) #12	CACNB4 (ENSGEVG00005020734) #13	STAM2 (ENSGEVG00005020687) #14	FMNL2 (ENSGEVG00005020309) #15	PRPF40A (ENSGEVG00005019971) #16	ARL6IP6 (ENSGEVG00005019950) #17	RPRM (ENSGEVG00005019943) #18	GALNT13 (ENSGEVG00005019923) #19	KCNJ3 (ENSGEVG00005019903) #20	ENSGEVG00005019893 #21	ENSGEVG00005019886 #21	GPD2 (ENSGEVG00005019873) #22	ENSGEVG00005019865 #23	ENSGEVG00005019858 #23	CYTIP (ENSGEVG00005019851) #25	ACVR1C (ENSGEVG00005019840) #26	ACVR1 (ENSGEVG00005019831) #27	UPP2 (ENSGEVG00005019811) #28	CCDC148 (ENSGEVG00005019792) #29	ENSGEVG00005019785	PKP4 (ENSGEVG00005019763) #31	DAPL1 (ENSGEVG00005019749) #32	TANC1 (ENSGEVG00005018129) #33	WDSUB1 (ENSGEVG00005017578) #34	BAZ2B (ENSGEVG00005006977) #35	MARCHF7 (ENSGEVG00005004908) #36	ENSGEVG00005004868
Abingdon island giant tortoise	MODERN SPECIES	96															NR4A2 (ENSCABG00000001114) #21	GPD2 (ENSCABG00000000238) #22	ENSCABG00000000166 #23	ENSCABG00000000160 #23	CYTIP (ENSCABG00000000110) #25	ENSCABG00000000105	ACVR1C (ENSCABG00000000050) #26	ACVR1 (ENSCABG00000000038) #27
Chinese turtle	MODERN SPECIES	1244	TNFAIP6 (ENSPSIG00000011601) #9	RIF1 (ENSPSIG00000012517) #10	NEB (ENSPSIG00000012844) #11	ARL5A (ENSPSIG00000016095) #12	ENSPSIG00000016101	CACNB4 (ENSPSIG00000016120) #13	STAM2 (ENSPSIG00000017391) #14	FMNL2 (ENSPSIG00000006880) #15	PRPF40A (ENSPSIG00000007197) #16	ENSPSIG00000007594	RPRM (ENSPSIG00000001821) #18	ENSPSIG00000001823	GALNT13 (ENSPSIG00000007606) #19	KCNJ3 (ENSPSIG00000007874) #20	NR4A2 (ENSPSIG00000008054) #21	GPD2 (ENSPSIG00000008060) #22	ENSPSIG00000001829	GALNT5 (ENSPSIG00000008270) #23	ERMN (ENSPSIG00000008413) #24	CYTIP (ENSPSIG00000008417) #25	ACVR1C (ENSPSIG00000009445) #26	ACVR1 (ENSPSIG00000009530) #27
Lepidosauria	ANCESTRAL SPECIES	7	ENSGT00530000063686.a.b #7	ENSGT00530000063686.a.a ##7	ENSGT00940000157201 #9	ENSGT00390000012204 #10	ENSGT00940000154533.b.d #11	ENSGT00940000154714 #12	ENSGT00950000182837.b.b #13	ENSGT00940000157055 #14	ENSGT00940000155515.a.b.b #15	ENSGT00930000150980.a #16	ENSGT00390000009987 #17	ENSGT00390000010523.c.b #18	ENSGT00940000158904 #19	ENSGT01080000257365.b.a.a.b.a #20	ENSGT00950000183038.a.b.b.b #21	ENSGT00390000001718 #22	ENSGT00940000159241 #23	ENSGT01090000260082.d.a.a.a.b #24	ENSGT00530000063734.a #25	ENSGT00940000158842 #26	ENSGT00940000160160 #27	ENSGT00940000161094 #28	ENSGT00940000153988.A #29	ENSGT00940000155773.b #31	ENSGT00940000154574.d #32	ENSGT00940000155655.B #33	ENSGT00940000157230 #34	ENSGT00940000155359 #35	ENSGT00940000179573	ENSGT00530000063836.a #36	ENSGT01050000244842.a.b.a #37
Episquamata	ANCESTRAL SPECIES		ENSGT00530000063686.a.b #7	ENSGT00530000063686.a.a ##7	ENSGT00940000157201 #9	ENSGT00390000012204 #10	ENSGT00940000154533.b.d #11	ENSGT00940000154714 #12	ENSGT00950000182837.b.b #13	ENSGT00940000157055 #14	ENSGT00940000155515.a.b.b #15	ENSGT00930000150980.a #16	ENSGT00390000009987 #17	ENSGT00390000010523.c.b #18	ENSGT00940000158904 #19	ENSGT01080000257365.b.a.a.b.a #20	ENSGT00950000183038.a.b.b.b #21	ENSGT00390000001718 #22	ENSGT00940000159241 #23	ENSGT01090000260082.d.a.a.a.b #24	ENSGT00530000063734.a #25	ENSGT00940000158842 #26	ENSGT00940000160160 #27	ENSGT00940000161094 #28	ENSGT00940000153988.A #29	ENSGT00940000155773.b #31	ENSGT00940000154574.d #32	ENSGT00940000155655.B #33	ENSGT00940000157230 #34	ENSGT00940000155359 #35	ENSGT00940000179573	ENSGT00530000063836.a #36	ENSGT01050000244842.a.b.a #37
Toxicofera	ANCESTRAL SPECIES	10	ENSGT00530000063686.a.b #7	ENSGT00530000063686.a.a ##7	ENSGT00940000157201 #9	ENSGT00390000012204 #10	ENSGT00940000154533.b.d.q #11	ENSGT00940000154714 #12	ENSGT00950000182837.b.b #13	ENSGT00940000157055 #14	ENSGT00940000155515.a.b.b #15	ENSGT00930000150980.a #16	ENSGT00390000009987 #17	ENSGT00390000010523.c.b #18	ENSGT00940000158904 #19	ENSGT01080000257365.b.a.a.b.a #20	ENSGT00950000183038.a.b.b.b #21	ENSGT00390000001718 #22	ENSGT00940000159241 #23	ENSGT01090000260082.d.a.a.a.b #24	ENSGT00530000063734.a #25	ENSGT00940000158842 #26	ENSGT00940000160160 #27	ENSGT00940000161094 #28	ENSGT00940000153988.A #29	ENSGT00940000155773.b #31	ENSGT00940000154574.d #32	ENSGT00940000155655.B #33	ENSGT00940000157230 #34	ENSGT00940000155359 #35	ENSGT00940000179573	ENSGT00530000063836.a #36	ENSGT01050000244842.a.b.a #37
Elapidae	ANCESTRAL SPECIES		ENSGT00940000157541	ENSGT00530000063686.a.a ##7	ENSGT00940000157201 #9	ENSGT00390000012204 #10	ENSGT00940000154533.b.d.q #11	ENSGT00940000154714 #12	ENSGT00950000182837.b.b.g #13	ENSGT00940000157055 #14	ENSGT00940000155515.a.b.b #15	ENSGT00930000150980.a #16	ENSGT00390000009987 #17	ENSGT00390000010523.c.b #18	ENSGT00940000158904.t #19	ENSGT01080000257365.b.a.a.b.a #20	ENSGT00950000183038.a.b.b.b #21	ENSGT00390000001718 #22	ENSGT00940000159241.n #23	ENSGT00530000063734.a #25	ENSGT00940000158842 #26	ENSGT00940000160160 #27	ENSGT00940000161094 #28	ENSGT00940000153988.A #29	ENSGT00940000155773.b #31	ENSGT00940000154574.d #32	ENSGT00940000155655.B #33	ENSGT00940000157230 #34	ENSGT00940000155359.i #35	ENSGT00530000063836.a #36	ENSGT01050000244842.a.b.a.m #37	ENSGT01050000244842.a.b.b.a.a.a ##37	ENSGT01050000244842.a.b.b.a.a.b ##37
Elapidae_a	ANCESTRAL SPECIES	5	ENSGT00940000157541	ENSGT00530000063686.a.a ##7	ENSGT00940000157201 #9	ENSGT00390000012204 #10	ENSGT00940000154533.b.d.q #11	ENSGT00940000154714 #12	ENSGT00950000182837.b.b.g #13	ENSGT00940000157055 #14	ENSGT00940000155515.a.b.b #15	ENSGT00930000150980.a #16	ENSGT00390000009987 #17	ENSGT00390000010523.c.b #18	ENSGT00940000158904.t #19	ENSGT01080000257365.b.a.a.b.a #20	ENSGT00950000183038.a.b.b.b #21	ENSGT00390000001718 #22	ENSGT00940000159241.n #23	ENSGT00530000063734.a #25	ENSGT00940000158842 #26	ENSGT00940000160160 #27	ENSGT00940000161094 #28	ENSGT00940000153988.A #29	ENSGT00940000155773.b #31	ENSGT00940000154574.d #32	ENSGT00940000155655.B #33	ENSGT00940000157230 #34	ENSGT00940000155359.i #35	ENSGT00530000063836.a #36	ENSGT01050000244842.a.b.a.m #37	ENSGT01050000244842.a.b.b.a.a.a ##37	ENSGT01050000244842.a.b.b.a.a.b ##37
Blue-lipped sea krait	MODERN SPECIES	8601																GPD2 (ENSLLTG00000012706) #22
Acanthophiinae	ANCESTRAL SPECIES	7	ENSGT00940000157541	ENSGT00530000063686.a.a ##7	ENSGT00940000157201 #9	ENSGT00390000012204 #10	ENSGT00940000154533.b.d.q #11	ENSGT00940000154714 #12	ENSGT00950000182837.b.b.g #13	ENSGT00940000157055 #14	ENSGT00940000155515.a.b.b #15	ENSGT00930000150980.a #16	ENSGT00390000009987 #17	ENSGT00390000010523.c.b #18	ENSGT00940000158904.t #19	ENSGT01080000257365.b.a.a.b.a #20	ENSGT00950000183038.a.b.b.b #21	ENSGT00390000001718 #22	ENSGT00940000159241.n #23	ENSGT00530000063734.a #25	ENSGT00940000158842 #26	ENSGT00940000160160 #27	ENSGT00940000161094 #28	ENSGT00940000153988.A #29	ENSGT00940000155773.b #31	ENSGT00940000154574.d #32	ENSGT00940000155655.B #33	ENSGT00940000157230 #34	ENSGT00940000155359.i #35	ENSGT00530000063836.a #36	ENSGT01050000244842.a.b.a.m #37	ENSGT01050000244842.a.b.b.a.a.a ##37	ENSGT01050000244842.a.b.b.a.a.b ##37
Eastern brown snake	MODERN SPECIES	7	TNFAIP6 (ENSPTXG00000012986) #9	RIF1 (ENSPTXG00000012982) #10	NEB (ENSPTXG00000012187) #11	ARL5A (ENSPTXG00000012173) #12	CACNB4 (ENSPTXG00000009947) #13	STAM2 (ENSPTXG00000009936) #14	FMNL2 (ENSPTXG00000006737) #15	PRPF40A (ENSPTXG00000006720) #16	ARL6IP6 (ENSPTXG00000006719) #17	RPRM (ENSPTXG00000006718) #18	GALNT13 (ENSPTXG00000006717) #19	ENSPTXG00000006716 #20	ENSPTXG00000006715 #20	ENSPTXG00000006714	NR4A2 (ENSPTXG00000006713) #21	GPD2 (ENSPTXG00000006621) #22	GALNT5 (ENSPTXG00000006617) #23	CYTIP (ENSPTXG00000006616) #25	ACVR1C (ENSPTXG00000005857) #26	ACVR1 (ENSPTXG00000010471) #27	UPP2 (ENSPTXG00000010469) #28	CCDC148 (ENSPTXG00000010468) #29	PKP4 (ENSPTXG00000010467) #31	TANC1 (ENSPTXG00000010462) #33	WDSUB1 (ENSPTXG00000010461) #34	BAZ2B (ENSPTXG00000009497) #35	MARCHF7 (ENSPTXG00000009496) #36	CD302 (ENSPTXG00000009495) #37	LY75 (ENSPTXG00000009492) ##37	PLA2R1 (ENSPTXG00000009488) ##37	ITGB6 (ENSPTXG00000009486)
Mainland tiger snake	DUPLICATION
Mainland tiger snake	MODERN SPECIES	62														ENSNSUG00000020537	ENSNSUG00000020536 #21	ENSNSUG00000020534 #22	ENSNSUG00000020533 #23	ENSNSUG00000020532 #26	ENSNSUG00000020531 #27	ENSNSUG00000020529 #28	ENSNSUG00000020528 #31	ENSNSUG00000020527 #32	ENSNSUG00000020526 #33	ENSNSUG00000020525 #34	ENSNSUG00000020524 #35	ENSNSUG00000020523 #35	ENSNSUG00000020522	ENSNSUG00000020521 #36	CD302 (ENSNSUG00000020520) #37	ENSNSUG00000020519	ENSNSUG00000020518 ##37
Mainland tiger snake	MODERN SPECIES	63														ENSNSUG00000020587	ENSNSUG00000020586 #21	ENSNSUG00000020585 #22	ENSNSUG00000020584 #23	ENSNSUG00000020583 #26	ENSNSUG00000020582 #27	ENSNSUG00000020581 #28	CCDC148 (ENSNSUG00000020580) #29	ENSNSUG00000020579 #31	ENSNSUG00000020578 #31	ENSNSUG00000020577 #32	ENSNSUG00000020576 #33	ENSNSUG00000020575 #34	ENSNSUG00000020574 #35	ENSNSUG00000020573 #36	ENSNSUG00000020572	ENSNSUG00000020570 ##37	ENSNSUG00000020569 ##37
Indian cobra	MODERN SPECIES		NMI (ENSNNAG00000019069) ##7	TNFAIP6 (ENSNNAG00000019067) #9	NEB (ENSNNAG00000018647) #11	ARL5A (ENSNNAG00000018385) #12	CACNB4 (ENSNNAG00000018360) #13	STAM2 (ENSNNAG00000018344) #14	FMNL2 (ENSNNAG00000018336) #15	ARL6IP6 (ENSNNAG00000018331) #17	ENSNNAG00000018328	ENSNNAG00000018325	ENSNNAG00000018324 #18	ENSNNAG00000018322 #18	GALNT13 (ENSNNAG00000018312) #19	KCNJ3 (ENSNNAG00000018307) #20	NR4A2 (ENSNNAG00000018303) #21	GPD2 (ENSNNAG00000018298) #22	ENSNNAG00000018296 #23	CYTIP (ENSNNAG00000018295) #25	ACVR1C (ENSNNAG00000018291) #26	ACVR1 (ENSNNAG00000018290) #27	UPP2 (ENSNNAG00000018288) #28	CCDC148 (ENSNNAG00000018282) #29	PKP4 (ENSNNAG00000018276) #31	DAPL1 (ENSNNAG00000018273) #32	TANC1 (ENSNNAG00000018263) #33	WDSUB1 (ENSNNAG00000018254) #34	BAZ2B (ENSNNAG00000016524) #35	MARCHF7 (ENSNNAG00000016265) #36	CD302 (ENSNNAG00000016249) #37	LY75 (ENSNNAG00000015800) ##37	PLA2R1 (ENSNNAG00000015384) ##37
Lizard	MODERN SPECIES	868												KCNJ3 (ENSACAG00000022462) #20	ENSACAG00000043493	ENSACAG00000038609	NR4A2 (ENSACAG00000007997) #21	GPD2 (ENSACAG00000007854) #22	GALNT5 (ENSACAG00000007780) #23	ERMN (ENSACAG00000007779) #24	CYTIP (ENSACAG00000039761) #25	ENSACAG00000042645 #26	ACVR1 (ENSACAG00000007562) #27
Laterata	ANCESTRAL SPECIES	2	ENSGT00530000063686.a.b #7	ENSGT00530000063686.a.a ##7	ENSGT00940000157201 #9	ENSGT00390000012204 #10	ENSGT00940000154533.b.d #11	ENSGT00940000154714 #12	ENSGT00950000182837.b.b #13	ENSGT00940000157055 #14	ENSGT00940000155515.a.b.b #15	ENSGT00930000150980.a #16	ENSGT00390000009987 #17	ENSGT00390000010523.c.b #18	ENSGT00940000158904 #19	ENSGT01080000257365.b.a.a.b.a #20	ENSGT00950000183038.a.b.b.b #21	ENSGT00390000001718 #22	ENSGT00940000159241 #23	ENSGT01090000260082.d.a.a.a.b #24	ENSGT00530000063734.a #25	ENSGT00940000158842 #26	ENSGT00940000160160 #27	ENSGT00940000161094 #28	ENSGT00940000153988.A #29	ENSGT00940000155773.b #31	ENSGT00940000154574.d #32	ENSGT00940000155655.B #33	ENSGT00940000157230 #34	ENSGT00940000155359 #35	ENSGT00530000063836.a #36	ENSGT01050000244842.a.b.a #37	ENSGT01050000244842.a.b.b.a.a.a ##37
Argentine black and white tegu	MODERN SPECIES	20	TNFAIP6 (ENSSMRG00000023455) #9	RIF1 (ENSSMRG00000023454) #10	NEB (ENSSMRG00000023318) #11	ARL5A (ENSSMRG00000023317) #12	CACNB4 (ENSSMRG00000023315) #13	STAM2 (ENSSMRG00000023314) #14	FMNL2 (ENSSMRG00000023312) #15	PRPF40A (ENSSMRG00000023310) #16	ARL6IP6 (ENSSMRG00000023309) #17	RPRM (ENSSMRG00000023307) #18	ENSSMRG00000023304	ENSSMRG00000023303	GALNT13 (ENSSMRG00000023302) #19	KCNJ3 (ENSSMRG00000023300) #20	NR4A2 (ENSSMRG00000023298) #21	GPD2 (ENSSMRG00000023297) #22	GALNT5 (ENSSMRG00000023296) #23	ENSSMRG00000023295	ACVR1C (ENSSMRG00000023294) #26	ACVR1 (ENSSMRG00000023293) #27	UPP2 (ENSSMRG00000023292) #28	CCDC148 (ENSSMRG00000023291) #29	PKP4 (ENSSMRG00000023290) #31	DAPL1 (ENSSMRG00000023288) #32	TANC1 (ENSSMRG00000023285) #33	WDSUB1 (ENSSMRG00000023284) #34	BAZ2B (ENSSMRG00000023282) #35	MARCHF7 (ENSSMRG00000023281) #36	CD302 (ENSSMRG00000023280) #37	LY75 (ENSSMRG00000023279) ##37	ENSSMRG00000023278
Common wall lizard	MODERN SPECIES		RIF1 (ENSPMRG00000001812) #10	NEB (ENSPMRG00000002804) #11	ARL5A (ENSPMRG00000007032) #12	CACNB4 (ENSPMRG00000007056) #13	STAM2 (ENSPMRG00000007098) #14	FMNL2 (ENSPMRG00000007265) #15	PRPF40A (ENSPMRG00000007825) #16	ARL6IP6 (ENSPMRG00000008504) #17	ENSPMRG00000008510	RPRM (ENSPMRG00000008513) #18	ENSPMRG00000008519 #19	ENSPMRG00000008525 #19	KCNJ3 (ENSPMRG00000008530) #20	ENSPMRG00000008534	NR4A2 (ENSPMRG00000008539) #21	GPD2 (ENSPMRG00000008548) #22	GALNT5 (ENSPMRG00000008562) #23	ERMN (ENSPMRG00000008582) #24	CYTIP (ENSPMRG00000008589) #25	ACVR1C (ENSPMRG00000008595) #26	ACVR1 (ENSPMRG00000008601) #27	UPP2 (ENSPMRG00000008608) #28	CCDC148 (ENSPMRG00000008622) #29	PKP4 (ENSPMRG00000008639) #31	DAPL1 (ENSPMRG00000008676) #32	TANC1 (ENSPMRG00000008679) #33	WDSUB1 (ENSPMRG00000008705) #34	BAZ2B (ENSPMRG00000008725) #35	MARCHF7 (ENSPMRG00000008793) #36	CD302 (ENSPMRG00000008807) #37	LY75 (ENSPMRG00000008837) ##37
tuatara	MODERN SPECIES	1147															NR4A2 (ENSSPUG00000006482) #21	GPD2 (ENSSPUG00000006454) #22
Anura	ANCESTRAL SPECIES	7	ENSGT00530000063686.a.a ##7	ENSGT00940000154311.a.b.o.a	ENSGT00940000157201 #9	ENSGT00390000012204 #10	ENSGT00940000154533.b.d #11	ENSGT00940000154714 #12	ENSGT00950000182837.b.b #13	ENSGT00940000157055 #14	ENSGT00940000155515.a.b.b #15	ENSGT00930000150980.a #16	ENSGT00390000009987 #17	ENSGT00390000010523.c.b #18	ENSGT00940000158904 #19	ENSGT01080000257365.b.a.a.b.a #20	ENSGT00950000183038.a.b.b.b #21	ENSGT00390000001718 #22	ENSGT00940000159241 #23	ENSGT00940000170556	ENSGT00530000063734.a #25	ENSGT00940000158842 #26	ENSGT00940000160160 #27	ENSGT00940000161094 #28	ENSGT00940000153988.A #29	ENSGT00940000155773.b #31	ENSGT00940000154574.d #32	ENSGT00940000155655.B #33	ENSGT00940000157230 #34	ENSGT00940000155359 #35	ENSGT00940000179573	ENSGT00530000063836.a #36	ENSGT01050000244842.a.b.a #37
Leishan spiny toad	MODERN SPECIES	10	ARL5A (ENSLLEG00000014229) #12	CACNB4 (ENSLLEG00000014323) #13	STAM2 (ENSLLEG00000014859) #14	FMNL2 (ENSLLEG00000015047) #15	PRPF40A (ENSLLEG00000016291) #16	ARL6IP6 (ENSLLEG00000016833) #17	ENSLLEG00000016903	ENSLLEG00000016932	RPRM (ENSLLEG00000016959) #18	GALNT13 (ENSLLEG00000017026) #19	ENSLLEG00000017970	KCNJ3 (ENSLLEG00000017995) #20	ENSLLEG00000018048	ENSLLEG00000018066	NR4A2 (ENSLLEG00000018085) #21	GPD2 (ENSLLEG00000018186) #22	GALNT5 (ENSLLEG00000018644) #23	ENSLLEG00000018737	ENSLLEG00000018763	CYTIP (ENSLLEG00000018811) #25	ENSLLEG00000018976	ACVR1C (ENSLLEG00000019000) #26	ENSLLEG00000019165	ACVR1 (ENSLLEG00000019218) #27	ENSLLEG00000019342	UPP2 (ENSLLEG00000019364) #28	ENSLLEG00000019415	ENSLLEG00000019439	CCDC148 (ENSLLEG00000019476) #29	PKP4 (ENSLLEG00000019677) #31	ENSLLEG00000021280
Frog	MODERN SPECIES	9	ENSXETG00000049120	tnfaip6 (ENSXETG00000004529) #9	nr5a1 (ENSXETG00000004530) #10	kcne3 (ENSXETG00000004531) #11	arl5a (ENSXETG00000021692) #12	cacnb4 (ENSXETG00000021694) #13	stam2 (ENSXETG00000021702) #14	fmnl2 (ENSXETG00000021703) #15	prpf40a (ENSXETG00000021713) #16	arl6ip6 (ENSXETG00000029993) #17	rprm (ENSXETG00000047739) #18	ENSXETG00000046799	galnt13 (ENSXETG00000021716) #19	kcnj3 (ENSXETG00000021717) #20	nr4a2 (ENSXETG00000031753) #21	gpd2 (ENSXETG00000024015) #22	galnt5 (ENSXETG00000037780) #23	cytip (ENSXETG00000035299) #25	acvr1c (ENSXETG00000010381) #26	acvr1 (ENSXETG00000010380) #27	upp2 (ENSXETG00000010379) #28	ccdc148 (ENSXETG00000010377) #29	pkp4 (ENSXETG00000010376) #31	dapl1 (ENSXETG00000038568) #32	ENSXETG00000044846	tanc1 (ENSXETG00000007592) #33	wdsub1 (ENSXETG00000007589) #34	baz2b (ENSXETG00000007584) #35	ENSXETG00000047939	marchf7 (ENSXETG00000007583) #36	ENSXETG00000031853 #37
Coelacanth	MODERN SPECIES	906															NR4A2 (ENSLACG00000010606) #21	GPD2 (ENSLACG00000011119) #22
Actinopterygii	ANCESTRAL SPECIES		ENSGT00390000008812.a	ENSGT00940000161562	ENSGT00940000160306	ENSGT00390000001856	ENSGT00940000155248	ENSGT00390000012731.a.b	ENSGT00390000017916	ENSGT00940000157879	ENSGT00940000155515.a.b.b #15	ENSGT00930000150980.a #16	ENSGT00390000009987 #17	ENSGT00390000010523.c.b #18	ENSGT00940000158904 #19	ENSGT01080000257365.b.a.a.b.a #20	ENSGT00950000183038.a.b.b.b #21	ENSGT00390000001718 #22	ENSGT00940000159241 #23	ENSGT00940000170556	ENSGT00530000063734.a #25	ENSGT00940000158842 #26	ENSGT00940000160160 #27	ENSGT00940000161094 #28	ENSGT00940000153988.A #29	ENSGT00940000155773.b #31	ENSGT00940000154574.d #32	ENSGT00940000155655.B #33	ENSGT00940000155655.A ##33	ENSGT00940000157230 #34	ENSGT00940000155359 #35	ENSGT00530000063836.a #36	ENSGT01050000244842.a.b.a.p #37
Neopterygii	ANCESTRAL SPECIES	1	ENSGT00940000175555	ENSGT00940000166969.a	ENSGT00940000155248	ENSGT00390000012731.a.b	ENSGT00390000017916	ENSGT00940000156832	ENSGT00950000183570	ENSGT00940000157879	ENSGT00940000155515.a.b.b #15	ENSGT00930000150980.a #16	ENSGT00390000009987 #17	ENSGT00390000010523.c.b #18	ENSGT00940000158904 #19	ENSGT01080000257365.b.a.a.b.a #20	ENSGT00950000183038.a.b.b.b #21	ENSGT00390000001718 #22	ENSGT00940000159241 #23	ENSGT00940000170556	ENSGT00530000063734.a #25	ENSGT00940000158842 #26	ENSGT00940000160160 #27	ENSGT00390000014376	ENSGT00940000161094 #28	ENSGT00940000153988.A #29	ENSGT00940000155773.b #31	ENSGT00940000154574.d #32	ENSGT00940000155655.B #33	ENSGT00940000155655.A ##33	ENSGT00940000157230 #34	ENSGT00940000155359 #35	ENSGT00530000063836.a #36
Osteoglossocephalai	DUPLICATION
Osteoglossocephalai	ANCESTRAL SPECIES	6	ENSGT00940000160306	ENSGT00390000001856	ENSGT00940000155248.wb	ENSGT00390000012731.a.b.j	ENSGT00940000166969.a	ENSGT00940000155248.vb	ENSGT00390000012731.a.b.i	ENSGT00390000017916	ENSGT00940000157879	ENSGT00940000155515.a.b.b #15	ENSGT00930000150980.a #16	ENSGT00390000010523.c.b #18	ENSGT00940000158904 #19	ENSGT01080000257365.b.a.a.b.a #20	ENSGT00950000183038.a.b.b.b.q #21	ENSGT00390000001718.a #22	ENSGT00940000159241 #23	ENSGT00530000063734.a #25	ENSGT00940000158842 #26	ENSGT00940000160160 #27	ENSGT00390000014376	ENSGT00940000161094 #28	ENSGT00940000153988.A #29	ENSGT00940000155773.b #31	ENSGT00940000154574.d #32	ENSGT00940000155655.B #33	ENSGT00940000155655.A ##33	ENSGT00940000157230.b #34	ENSGT00940000155359.w.b #35	ENSGT00530000063836.a #36	ENSGT01050000244842.a.b.a.p #37
Osteoglossiformes	ANCESTRAL SPECIES	104	ENSGT00940000161562	ENSGT00940000160306.j	ENSGT00390000001856	ENSGT00940000166969.a	ENSGT00940000155248.vb.j	ENSGT00390000012731.a.b.i	ENSGT00390000017916	ENSGT00940000157879.y	ENSGT00940000155515.a.b.b.q #15	ENSGT00930000150980.a #16	ENSGT00390000010523.c.b #18	ENSGT00940000158904.nb.a #19	ENSGT00940000158904.nb.b #19	ENSGT01080000257365.b.a.a.b.a #20	ENSGT00950000183038.a.b.b.b.q #21	ENSGT00390000001718.a #22	ENSGT00940000159241 #23	ENSGT00530000063734.a.d #25	ENSGT00940000158842.k #26	ENSGT00940000160160 #27	ENSGT00390000014376.a	ENSGT00940000153988.A #29	ENSGT00940000155773.b #31	ENSGT00940000154574.d #32	ENSGT00940000155655.B.g #33	ENSGT00940000157230.b #34	ENSGT00940000155359.x #35	ENSGT00530000063836.a.k #36	ENSGT00530000063836.a.l #36	ENSGT01050000244842.a.b.b.a.a.a.g ##37	ENSGT00940000156082.a.b.b
P. kingsleyae	MODERN SPECIES		P2RY8 (ENSPKIG00000004374)	asmtl (ENSPKIG00000004335)	rif1 (ENSPKIG00000004267) #10	ENSPKIG00000004205 #11	ENSPKIG00000004024 #11	cavin2b (ENSPKIG00000003900)	ENSPKIG00000003866	gtf3c3 (ENSPKIG00000003724)	phgdh (ENSPKIG00000003606)	phospho2 (ENSPKIG00000003569)	ENSPKIG00000003541	fastkd1 (ENSPKIG00000003497)	KLHL41 (ENSPKIG00000003458)	bbs5 (ENSPKIG00000003384)	nr4a2a (ENSPKIG00000003335) #21	GPD2 (ENSPKIG00000003266) #22	ENSPKIG00000003236 #23	ENSPKIG00000003217 #23	CYTIP (ENSPKIG00000003207) #25	ACVR1C (ENSPKIG00000003155) #26	ACVR1 (ENSPKIG00000003095) #27	ENSPKIG00000003045	CCDC148 (ENSPKIG00000003009) #29	ENSPKIG00000002987	PKP4 (ENSPKIG00000002940) #31	ENSPKIG00000002882 #32	TANC1 (ENSPKIG00000002792) #33	wdsub1 (ENSPKIG00000002741) #34	BAZ2B (ENSPKIG00000002505) #35	ENSPKIG00000002360 #36	CD302 (ENSPKIG00000002341) #37
Asian bonytongue	MODERN SPECIES	3	cdk5r2b (ENSSFOG00015023612)	fev (ENSSFOG00015024628)	CRYBA2 (ENSSFOG00015013272)	umps (ENSSFOG00015023583)	KALRN (ENSSFOG00015023487)	ENSSFOG00015023442	ENSSFOG00015023438	MYLK (ENSSFOG00015023399)	FMNL2 (ENSSFOG00015023356) #15	prpf40a (ENSSFOG00015023336) #16	rprma (ENSSFOG00015023332) #18	GALNT13 (ENSSFOG00015032712) #19	ENSSFOG00015033050	KCNJ3 (ENSSFOG00015026200) #20	nr4a2a (ENSSFOG00015023308) #21	GPD2 (ENSSFOG00015023284) #22	ENSSFOG00015023277	GALNT5 (ENSSFOG00015023241) #23	CYTIP (ENSSFOG00015023216) #25	ACVR1C (ENSSFOG00015023209) #26	ACVR1 (ENSSFOG00015014774) #27	ENSSFOG00015023198	CCDC148 (ENSSFOG00015023191) #29	PKP4 (ENSSFOG00015023176) #31	ENSSFOG00015027563	TANC1 (ENSSFOG00015023160) #33	wdsub1 (ENSSFOG00015023131) #34	BAZ2B (ENSSFOG00015023101) #35	MARCHF7 (ENSSFOG00015023077) #36	CD302 (ENSSFOG00015023072) #37	LY75 (ENSSFOG00015023055) ##37
Clupeocephala	ANCESTRAL SPECIES	3	ENSGT00940000159281	ENSGT00940000160299	ENSGT00390000008812.a.a	ENSGT00940000161562	ENSGT00940000160306	ENSGT00390000001856	ENSGT00940000155248.wb	ENSGT00390000012731.a.b.j	ENSGT00940000157879	ENSGT00940000155515.a.b.b #15	ENSGT00930000150980.a #16	ENSGT00390000010523.c.b #18	ENSGT00940000158904 #19	ENSGT01080000257365.b.a.a.b.a #20	ENSGT00950000183038.a.b.b.b.q #21	ENSGT00390000001718.a #22	ENSGT00940000159241 #23	ENSGT00530000063734.a #25	ENSGT00940000158842 #26	ENSGT00940000160160 #27	ENSGT00390000014376.c.a	ENSGT00940000161094 #28	ENSGT00940000153988.A #29	ENSGT00940000155773.b #31	ENSGT00940000154574.d #32	ENSGT00940000155655.B #33	ENSGT00390000014376.c.b	ENSGT00940000155773.a ##31	ENSGT00940000155655.A ##33	ENSGT00940000157230.a #34	ENSGT00940000155359.w.a #35
Euteleosteomorpha	ANCESTRAL SPECIES	6	ENSGT00940000159281	ENSGT00940000160299	ENSGT00390000008812.a.a	ENSGT00940000161562	ENSGT00940000160306	ENSGT00390000001856	ENSGT00940000175555	ENSGT00940000161753	ENSGT00940000157879	ENSGT00940000155515.a.b.b #15	ENSGT00930000150980.a #16	ENSGT00390000010523.c.b #18	ENSGT00940000158904 #19	ENSGT01080000257365.b.a.a.b.a #20	ENSGT00950000183038.a.b.b.b.q #21	ENSGT00390000001718.a #22	ENSGT00940000159241 #23	ENSGT00530000063734.a #25	ENSGT00940000158842 #26	ENSGT00940000160160 #27	ENSGT00390000014376.c.a	ENSGT00940000161094 #28	ENSGT00940000153988.A #29	ENSGT00940000155773.b #31	ENSGT00940000154574.d #32	ENSGT00940000155655.B #33	ENSGT00940000157230.a #34	ENSGT00940000155359.w.a #35	ENSGT01050000244842.a.b.a.p #37	ENSGT00940000156082.a.a	ENSGT00390000008712
Acanthomorphata	ANCESTRAL SPECIES	5	ENSGT00940000170370	ENSGT00950000183009.db.b	ENSGT00940000161051.a.a.a.a.a	ENSGT00940000154856.A.a.d	ENSGT00390000005911	ENSGT00950000182942.a.b	ENSGT00940000164909.e.a	ENSGT00390000004977.d.a	ENSGT00950000182895.a.b.u.b	ENSGT00940000155515.a.b.b #15	ENSGT00930000150980.a #16	ENSGT00390000010523.c.b #18	ENSGT00940000158904 #19	ENSGT01080000257365.b.a.a.b.a #20	ENSGT00950000183038.a.b.b.b.q #21	ENSGT00390000001718.a #22	ENSGT00940000159241 #23	ENSGT00530000063734.a #25	ENSGT00940000158842 #26	ENSGT00940000160160 #27	ENSGT00390000014376.c.a	ENSGT00940000161094 #28	ENSGT00940000153988.A #29	ENSGT00940000155773.b #31	ENSGT00940000154574.d #32	ENSGT00940000155655.B #33	ENSGT00980000201197	ENSGT00940000156447.a.b	ENSGT00940000157230.a #34	ENSGT00940000155359.w.a #35	ENSGT01050000244842.a.b.a.p #37
Euacanthomorphacea	ANCESTRAL SPECIES	15	ENSGT00940000154913	ENSGT00950000183009.db.b	ENSGT00940000161051.a.a.a.a.a	ENSGT00940000154856.A.a.d	ENSGT00390000005911	ENSGT00950000182942.a.b	ENSGT00940000164909.e.a	ENSGT00390000004977.d.a	ENSGT00950000182895.a.b.u.b	ENSGT00940000155515.a.b.b #15	ENSGT00930000150980.a #16	ENSGT00390000010523.c.b #18	ENSGT00940000158904 #19	ENSGT01080000257365.b.a.a.b.a #20	ENSGT00950000183038.a.b.b.b.q #21	ENSGT00390000001718.a #22	ENSGT00940000159241 #23	ENSGT00650000094711	ENSGT00530000063734.a #25	ENSGT00940000158842 #26	ENSGT00940000160160 #27	ENSGT00940000164733	ENSGT00390000014376.c.a	ENSGT00940000161094 #28	ENSGT00940000153988.A #29	ENSGT00940000155773.b #31	ENSGT00940000154574.d #32	ENSGT00940000155655.B #33	ENSGT00940000157230.a #34	ENSGT00940000155359.w.a #35	ENSGT01050000244842.a.b.a.p #37
Pinecone sodierfish	MODERN SPECIES	13	igf2bp2a (ENSMMDG00005012390)	tra2b (ENSMMDG00005012404)	ENSMMDG00005012405	ENSMMDG00005012414	ANKZF1 (ENSMMDG00005012419)	glb1l (ENSMMDG00005012497)	ENSMMDG00005015828	ENSMMDG00005015861	sumo3b (ENSMMDG00005015867)	FMNL2 (ENSMMDG00005015888) #15	prpf40a (ENSMMDG00005016028) #16	rprmb (ENSMMDG00005018898) #18	GALNT13 (ENSMMDG00005018908) #19	KCNJ3 (ENSMMDG00005019236) #20	nr4a2a (ENSMMDG00005019238) #21	GPD2 (ENSMMDG00005019248) #22	GALNT5 (ENSMMDG00005019585) #23	ENSMMDG00005019589	CYTIP (ENSMMDG00005019593) #25	ACVR1C (ENSMMDG00005019596) #26	ENSMMDG00005019599	ENSMMDG00005019600	upp2 (ENSMMDG00005019606) #28	CCDC148 (ENSMMDG00005019711) #29	PKP4 (ENSMMDG00005019736) #31	dap1b (ENSMMDG00005021383) #32	TANC1 (ENSMMDG00005021396) #33	ENSMMDG00005021621	WDSUB1 (ENSMMDG00005021623) #34	BAZ2B (ENSMMDG00005021699) #35	CD302 (ENSMMDG00005023642) #37
Percomorphaceae	ANCESTRAL SPECIES	34	ENSGT00940000154913	ENSGT00950000183009.db.b	ENSGT00940000161051.a.a.a.a.a	ENSGT00940000154856.A.a.d	ENSGT00390000005911	ENSGT00950000182942.a.b	ENSGT00940000164909.e.a	ENSGT00390000004977.d.a	ENSGT00950000182895.a.b.u.b	ENSGT00940000155515.a.b.b #15	ENSGT00930000150980.a #16	ENSGT00390000010523.c.b #18	ENSGT00940000158904 #19	ENSGT01080000257365.b.a.a.b.a #20	ENSGT00950000183038.a.b.b.b.q #21	ENSGT00390000001718.a #22	ENSGT00940000159241 #23	ENSGT00650000094711	ENSGT00530000063734.a #25	ENSGT00940000158842 #26	ENSGT00940000160160 #27	ENSGT00940000164733	ENSGT00390000014376.c.a	ENSGT00940000161094 #28	ENSGT00940000153988.A #29	ENSGT00940000178980	ENSGT00940000155773.b #31	ENSGT00940000154574.d #32	ENSGT00940000155655.B #33	ENSGT00940000157230.a #34	ENSGT00940000155359.w.a #35
Percomorphaceae_B	ANCESTRAL SPECIES	17	ENSGT00940000154913	ENSGT00950000183009.db.b	ENSGT00940000161051.a.a.a.a.a	ENSGT00940000154856.A.a.d	ENSGT00390000005911	ENSGT00950000182942.a.b	ENSGT00940000164909.e.a	ENSGT00390000004977.d.a	ENSGT00950000182895.a.b.u.b	ENSGT00940000155515.a.b.b #15	ENSGT00930000150980.a #16	ENSGT00390000010523.c.b #18	ENSGT00940000158904 #19	ENSGT01080000257365.b.a.a.b.a #20	ENSGT00950000183038.a.b.b.b.q #21	ENSGT00390000001718.a #22	ENSGT00940000159241 #23	ENSGT00650000094711	ENSGT00530000063734.a #25	ENSGT00940000158842 #26	ENSGT00940000164733	ENSGT00390000014376.c.a	ENSGT00940000161094 #28	ENSGT00940000153988.A #29	ENSGT00940000178980	ENSGT00940000168997	ENSGT00940000155773.b #31	ENSGT00940000154574.d #32	ENSGT00940000155655.B #33	ENSGT00940000157230.a #34	ENSGT00940000155359.w.a #35
Percomorphaceae_C	ANCESTRAL SPECIES	13	ENSGT00940000154913	ENSGT00950000183009.db.b	ENSGT00940000161051.a.a.a.a.a	ENSGT00940000154856.A.a.d	ENSGT00390000005911	ENSGT00950000182942.a.b	ENSGT00940000164909.e.a	ENSGT00390000004977.d.a	ENSGT00950000182895.a.b.u.b	ENSGT00940000155515.a.b.b #15	ENSGT00930000150980.a #16	ENSGT00390000010523.c.b #18	ENSGT00940000158904 #19	ENSGT01080000257365.b.a.a.b.a #20	ENSGT00950000183038.a.b.b.b.q #21	ENSGT00390000001718.a #22	ENSGT00940000159241 #23	ENSGT00650000094711	ENSGT00530000063734.a #25	ENSGT00940000158842 #26	ENSGT00940000164733	ENSGT00390000014376.c.a	ENSGT00940000161094 #28	ENSGT00940000153988.A #29	ENSGT00940000155773.b #31	ENSGT00940000154574.d #32	ENSGT00940000155655.B #33	ENSGT00940000157230.a #34	ENSGT00940000155359.w.a #35	ENSGT00940000179195	ENSGT01050000244842.a.b.a.p #37
Eupercaria	ANCESTRAL SPECIES	25	ENSGT00940000161051.a.a.a.a.a	ENSGT00940000154856.A.a.d	ENSGT00390000005911	ENSGT00950000182942.a.b	ENSGT00940000164909.e.a	ENSGT00390000004977.d.a	ENSGT00950000182895.a.b.v.k.n	ENSGT00940000168354	ENSGT00950000182895.a.b.u.b	ENSGT00940000155515.a.b.b #15	ENSGT00930000150980.a #16	ENSGT00390000010523.c.b #18	ENSGT00940000158904 #19	ENSGT01080000257365.b.a.a.b.a #20	ENSGT00950000183038.a.b.b.b.q #21	ENSGT00390000001718.a #22	ENSGT00940000159241 #23	ENSGT00650000094711	ENSGT00530000063734.a #25	ENSGT00940000158842 #26	ENSGT00940000164733	ENSGT00390000014376.c.a	ENSGT00940000161094 #28	ENSGT00940000153988.A #29	ENSGT00940000155773.b #31	ENSGT00940000154574.d #32	ENSGT00940000155655.B #33	ENSGT00940000157230.a #34	ENSGT00940000155359.w.a #35	ENSGT01050000244842.a.b.a.p #37	ENSGT00940000156082.a.a
Tetraodontidae	ANCESTRAL SPECIES		ENSGT00940000154913	ENSGT00950000183009.db.b	ENSGT00940000161051.a.a.a.a.a	ENSGT00940000161051.a.a.a.a.b	ENSGT00390000005911	ENSGT00950000182942.a.b	ENSGT00940000164909.e.a	ENSGT00390000004977.d.a	ENSGT00950000182895.a.b.v.k.m.a	ENSGT00940000155515.a.b.b #15	ENSGT00930000150980.a #16	ENSGT00390000010523.c.b #18	ENSGT00940000158904 #19	ENSGT01080000257365.b.a.a.b.a #20	ENSGT00950000183038.a.b.b.b.q #21	ENSGT00390000001718.a #22	ENSGT00940000159241 #23	ENSGT00650000094711	ENSGT00530000063734.a #25	ENSGT00940000158842 #26	ENSGT00940000164733	ENSGT00940000161094 #28	ENSGT00940000153988.A #29	ENSGT00940000155773.b #31	ENSGT00940000154574.d #32	ENSGT00940000155655.B #33	ENSGT00940000157230.a #34	ENSGT01050000244842.a.b.a.p #37	ENSGT00940000156082.a.a	ENSGT00390000008712	ENSGT00940000156994
Tetraodon	MODERN SPECIES	13	igf2bp2a (ENSTNIG00000016472)	tra2b (ENSTNIG00000000790)	ENSTNIG00000016473	ENSTNIG00000016474	ANKZF1 (ENSTNIG00000016475)	glb1l (ENSTNIG00000016476)	ENSTNIG00000000645	ENSTNIG00000016477	ENSTNIG00000016478	ENSTNIG00000016479	FMNL2 (ENSTNIG00000016480) #15	prpf40a (ENSTNIG00000016481) #16	GALNT13 (ENSTNIG00000016482) #19	KCNJ3 (ENSTNIG00000016483) #20	nr4a2a (ENSTNIG00000016484) #21	ENSTNIG00000016485 #22	ENSTNIG00000016486 #23	ENSTNIG00000001555 #23	ENSTNIG00000016487 #25	ACVR1C (ENSTNIG00000016488) #26	ENSTNIG00000016489	upp2 (ENSTNIG00000016490) #28	CCDC148 (ENSTNIG00000016491) #29	PKP4 (ENSTNIG00000016492) #31	dap1b (ENSTNIG00000001021) #32	TANC1 (ENSTNIG00000016493) #33	WDSUB1 (ENSTNIG00000016494) #34	ENSTNIG00000016495 #37	RBMS1 (ENSTNIG00000016496)	tank (ENSTNIG00000001404)	tbr1b (ENSTNIG00000016497)
Eupecaria_A	ANCESTRAL SPECIES	24	ENSGT00940000161051.a.a.a.a.a	ENSGT00940000154856.A.a.d	ENSGT00390000005911	ENSGT00950000182942.a.b	ENSGT00940000164909.e.a	ENSGT00390000004977.d.a	ENSGT00950000182895.a.b.v.k.n	ENSGT00940000168354	ENSGT00950000182895.a.b.u.b	ENSGT00940000155515.a.b.b #15	ENSGT00930000150980.a #16	ENSGT00390000010523.c.b #18	ENSGT00940000158904 #19	ENSGT01080000257365.b.a.a.b.a #20	ENSGT00950000183038.a.b.b.b.q #21	ENSGT00390000001718.a #22	ENSGT00940000159241 #23	ENSGT00650000094711	ENSGT00530000063734.a #25	ENSGT00940000158842 #26	ENSGT00940000164733	ENSGT00390000014376.c.a	ENSGT00940000161094 #28	ENSGT00940000153988.A #29	ENSGT00940000155773.b #31	ENSGT00940000154574.d #32	ENSGT00940000155655.B #33	ENSGT00940000157230.a #34	ENSGT00940000155359.w.a #35	ENSGT01050000244842.a.b.a.p #37	ENSGT00940000156082.a.a
Eupecaria_B	ANCESTRAL SPECIES	24	ENSGT00940000154913	ENSGT00950000183009.db.b	ENSGT00940000161051.a.a.a.a.a	ENSGT00940000154856.A.a.d	ENSGT00390000005911	ENSGT00950000182942.a.b	ENSGT00940000164909.e.a	ENSGT00390000004977.d.a	ENSGT00950000182895.a.b.v.k.n	ENSGT00940000155515.a.b.b #15	ENSGT00930000150980.a #16	ENSGT00390000010523.c.b #18	ENSGT00940000158904 #19	ENSGT01080000257365.b.a.a.b.a #20	ENSGT00950000183038.a.b.b.b.q #21	ENSGT00390000001718.a #22	ENSGT00940000159241 #23	ENSGT00650000094711	ENSGT00530000063734.a #25	ENSGT00940000158842 #26	ENSGT00940000164733	ENSGT00390000014376.c.a	ENSGT00940000161094 #28	ENSGT00940000153988.A #29	ENSGT00940000155773.b #31	ENSGT00940000154574.d #32	ENSGT00940000155655.B #33	ENSGT00940000157230.a #34	ENSGT00940000155359.w.a #35	ENSGT01050000244842.a.b.a.p #37	ENSGT00940000156082.a.a
Perciformes	ANCESTRAL SPECIES	23	ENSGT00940000154913	ENSGT00950000183009.db.b	ENSGT00940000161051.a.a.a.a.a	ENSGT00940000154856.A.a.d	ENSGT00390000005911	ENSGT00950000182942.a.b	ENSGT00940000164909.e.a	ENSGT00390000004977.d.a	ENSGT00950000182895.a.b.v.k.n	ENSGT00940000155515.a.b.b #15	ENSGT00930000150980.a #16	ENSGT00390000010523.c.b #18	ENSGT00940000158904 #19	ENSGT01080000257365.b.a.a.b.a #20	ENSGT00950000183038.a.b.b.b.q #21	ENSGT00390000001718.a #22	ENSGT00940000159241 #23	ENSGT00650000094711	ENSGT00530000063734.a #25	ENSGT00940000158842 #26	ENSGT00940000164733	ENSGT00390000014376.c.a	ENSGT00940000161094 #28	ENSGT00940000153988.A #29	ENSGT00940000155773.b #31	ENSGT00940000154574.d #32	ENSGT00940000155655.B #33	ENSGT00940000157230.a #34	ENSGT00940000155359.w.a #35	ENSGT01050000244842.a.b.a.p #37	ENSGT00940000156082.a.a
Perciformes_a	ANCESTRAL SPECIES	23	ENSGT00940000154913	ENSGT00950000183009.db.b	ENSGT00940000161051.a.a.a.a.a	ENSGT00940000154856.A.a.d	ENSGT00390000005911	ENSGT00950000182942.a.b	ENSGT00940000164909.e.a	ENSGT00390000004977.d.a	ENSGT00950000182895.a.b.v.k.n	ENSGT00940000155515.a.b.b #15	ENSGT00930000150980.a #16	ENSGT00390000010523.c.b #18	ENSGT00940000158904 #19	ENSGT01080000257365.b.a.a.b.a #20	ENSGT00950000183038.a.b.b.b.q #21	ENSGT00390000001718.a #22	ENSGT00940000159241 #23	ENSGT00650000094711	ENSGT00530000063734.a #25	ENSGT00940000158842 #26	ENSGT00940000164733	ENSGT00390000014376.c.a	ENSGT00940000161094 #28	ENSGT00940000153988.A #29	ENSGT00940000155773.b #31	ENSGT00940000154574.d #32	ENSGT00940000155655.B #33	ENSGT00940000157230.a #34	ENSGT00940000155359.w.a #35	ENSGT01050000244842.a.b.a.p #37	ENSGT00940000156082.a.a
Channel bull blenny	MODERN SPECIES	13	igf2bp2a (ENSCGOG00000024722)	tra2b (ENSCGOG00000024721)	ENSCGOG00000024720	ENSCGOG00000024719	ANKZF1 (ENSCGOG00000024717)	glb1l (ENSCGOG00000024716)	ENSCGOG00000024715	ENSCGOG00000024714	sumo3a (ENSCGOG00000024713)	FMNL2 (ENSCGOG00000024699) #15	prpf40a (ENSCGOG00000024649) #16	rprmb (ENSCGOG00000024635) #18	GALNT13 (ENSCGOG00000024600) #19	KCNJ3 (ENSCGOG00000024583) #20	nr4a2a (ENSCGOG00000024582) #21	ENSCGOG00000024581 #22	GALNT5 (ENSCGOG00000024568) #23	ENSCGOG00000024567	CYTIP (ENSCGOG00000024565) #25	ACVR1C (ENSCGOG00000024563) #26	ENSCGOG00000024561	ENSCGOG00000024560	upp2 (ENSCGOG00000024556) #28	CCDC148 (ENSCGOG00000024555) #29	PKP4 (ENSCGOG00000024461) #31	dap1b (ENSCGOG00000024419) #32	TANC1 (ENSCGOG00000024338) #33	ENSCGOG00000024318	BAZ2B (ENSCGOG00000024230) #35	ENSCGOG00000024185 #37	RBMS1 (ENSCGOG00000024154)
Eupecaria_C	ANCESTRAL SPECIES	24	ENSGT00940000161051.a.a.a.a.a	ENSGT00940000161051.a.a.a.a.b	ENSGT00940000154856.A.a.d	ENSGT00390000005911	ENSGT00950000182942.a.b	ENSGT00940000164909.e.a	ENSGT00390000004977.d.a	ENSGT00950000182895.a.b.v.k.n	ENSGT00950000182895.a.b.u.b	ENSGT00940000155515.a.b.b #15	ENSGT00930000150980.a #16	ENSGT00390000010523.c.b #18	ENSGT00940000158904 #19	ENSGT01080000257365.b.a.a.b.a #20	ENSGT00950000183038.a.b.b.b.q #21	ENSGT00390000001718.a #22	ENSGT00940000159241 #23	ENSGT00530000063734.a #25	ENSGT00940000158842 #26	ENSGT00940000164733	ENSGT00390000014376.c.a	ENSGT00940000161094 #28	ENSGT00940000153988.A #29	ENSGT00940000155773.b #31	ENSGT00940000154574.d #32	ENSGT00940000155655.B #33	ENSGT00940000157230.a #34	ENSGT00940000155359.w.a #35	ENSGT01050000244842.a.b.a.p #37	ENSGT00940000156082.a.a	ENSGT00940000153704.A.r
Eupercaria_incertae_sedis	ANCESTRAL SPECIES	24	ENSGT00950000183009.db.b	ENSGT00940000161051.a.a.a.a.a	ENSGT00940000161051.a.a.a.a.b	ENSGT00390000005911	ENSGT00950000182942.a.b	ENSGT00940000164909.e.a	ENSGT00390000004977.d.a	ENSGT00950000182895.a.b.v.k.n	ENSGT00950000182895.a.b.u.b	ENSGT00940000155515.a.b.b #15	ENSGT00930000150980.a #16	ENSGT00390000010523.c.b #18	ENSGT00940000158904 #19	ENSGT01080000257365.b.a.a.b.a #20	ENSGT00950000183038.a.b.b.b.q #21	ENSGT00390000001718.a #22	ENSGT00940000159241 #23	ENSGT00530000063734.a #25	ENSGT00940000158842 #26	ENSGT00940000164733	ENSGT00390000014376.c.a	ENSGT00940000161094 #28	ENSGT00940000153988.A #29	ENSGT00940000155773.b #31	ENSGT00940000154574.d #32	ENSGT00940000155655.B #33	ENSGT00940000157230.a #34	ENSGT00940000155359.w.a #35	ENSGT01050000244842.a.b.a.p #37	ENSGT00940000156082.a.a	ENSGT00940000153704.A.r
European seabass	MODERN SPECIES	5	ehhadh (ENSDLAG00005020031)	tmem41aa (ENSDLAG00005027741)	igf2bp2a (ENSDLAG00005020121)	tra2b (ENSDLAG00005021470)	ENSDLAG00005000115	ENSDLAG00005000133	ENSDLAG00005000283	ENSDLAG00005000671	ENSDLAG00005030476	ENSDLAG00005030680	ENSDLAG00005000917 #15	PRPF40A (ENSDLAG00005001258) #16	RPRM (ENSDLAG00005031449) #18	GALNT13 (ENSDLAG00005003545) #19	nr4a2a (ENSDLAG00005003924) #21	ENSDLAG00005003961 #22	GALNT5 (ENSDLAG00005004000) #23	CYTIP (ENSDLAG00005004012) #25	ACVR1C (ENSDLAG00005004029) #26	ENSDLAG00005004101	ENSDLAG00005004188	UPP2 (ENSDLAG00005004214) #28	CCDC148 (ENSDLAG00005033481) #29	PKP4 (ENSDLAG00005004377) #31	dap1b (ENSDLAG00005005030) #32	TANC1 (ENSDLAG00005005119) #33	WDSUB1 (ENSDLAG00005007269) #34	BAZ2B (ENSDLAG00005007355) #35	RBMS1 (ENSDLAG00005027477)	ENSDLAG00005008588	tbr1b (ENSDLAG00005008602)
Large yellow croaker	MODERN SPECIES	490	ENSLCRG00005010188	ANKZF1 (ENSLCRG00005010191)	glb1l (ENSLCRG00005010230)	ENSLCRG00005012252	ENSLCRG00005012717	ENSLCRG00005012718	ENSLCRG00005012722	ENSLCRG00005012724	FMNL2 (ENSLCRG00005012775) #15	ENSLCRG00005016128	prpf40a (ENSLCRG00005016144) #16	rprmb (ENSLCRG00005017705) #18	GALNT13 (ENSLCRG00005017713) #19	KCNJ3 (ENSLCRG00005017944) #20	nr4a2a (ENSLCRG00005017945) #21	ENSLCRG00005017946 #22	ENSLCRG00005017947	ITGA4 (ENSLCRG00005017949)	cerkl (ENSLCRG00005017953)	neurod1 (ENSLCRG00005017954)	ENSLCRG00005017955	RAPH1 (ENSLCRG00005017966)	rif1 (ENSLCRG00005018150) #10	tnfaip6 (ENSLCRG00005018243) #9	itgb5 (ENSLCRG00005018299)	ENSLCRG00005020641	etv5a (ENSLCRG00005020645)	ENSLCRG00005020697	crygs3 (ENSLCRG00005022064)	crygs4 (ENSLCRG00005022065)	ENSLCRG00005022068
Gilthead seabream	MODERN SPECIES	23	igf2bp2a (ENSSAUG00010027330)	tra2b (ENSSAUG00010027319)	ENSSAUG00010027315	ENSSAUG00010027313	ANKZF1 (ENSSAUG00010027309)	glb1l (ENSSAUG00010027170)	ENSSAUG00010026994	ENSSAUG00010026927	sumo3a (ENSSAUG00010026924)	prpf40a (ENSSAUG00010026723) #16	FMNL2 (ENSSAUG00010026687) #15	rprmb (ENSSAUG00010026685) #18	GALNT13 (ENSSAUG00010026683) #19	KCNJ3 (ENSSAUG00010026682) #20	nr4a2a (ENSSAUG00010026680) #21	ENSSAUG00010026679 #22	ENSSAUG00010026678	GALNT5 (ENSSAUG00010026677) #23	CYTIP (ENSSAUG00010026676) #25	ACVR1C (ENSSAUG00010026675) #26	ENSSAUG00010026674	ENSSAUG00010026673	upp2 (ENSSAUG00010026672) #28	CCDC148 (ENSSAUG00010026671) #29	PKP4 (ENSSAUG00010026667) #31	dap1b (ENSSAUG00010026665) #32	TANC1 (ENSSAUG00010026528) #33	ENSSAUG00010026523	WDSUB1 (ENSSAUG00010026522) #34	BAZ2B (ENSSAUG00010025798) #35	CD302 (ENSSAUG00010025768) #37
Percomorphaceae_D	ANCESTRAL SPECIES	12	ENSGT00940000154913	ENSGT00950000183009.db.b	ENSGT00940000161051.a.a.a.a.a	ENSGT00940000154856.A.a.d	ENSGT00390000005911	ENSGT00950000182942.a.b	ENSGT00940000164909.e.a	ENSGT00390000004977.d.a	ENSGT00950000182895.a.b.u.b	ENSGT00940000155515.a.b.b #15	ENSGT00930000150980.a #16	ENSGT00390000010523.c.b #18	ENSGT00940000158904 #19	ENSGT01080000257365.b.a.a.b.a #20	ENSGT00950000183038.a.b.b.b.q #21	ENSGT00390000001718.a #22	ENSGT00940000159241 #23	ENSGT00650000094711	ENSGT00530000063734.a #25	ENSGT00940000158842 #26	ENSGT00940000164733	ENSGT00390000014376.c.a	ENSGT00940000161094 #28	ENSGT00940000153988.A #29	ENSGT00940000155773.b #31	ENSGT00940000154574.d #32	ENSGT00940000155655.B #33	ENSGT00940000157230.a #34	ENSGT00940000155359.w.a #35	ENSGT00940000179195	ENSGT01050000244842.a.b.a.p #37
Anabantaria	ANCESTRAL SPECIES	14	ENSGT00950000183009.db.b	ENSGT00940000161051.a.a.a.a.a	ENSGT00940000161051.a.a.a.a.b	ENSGT00940000154856.A.a.d	ENSGT00390000005911	ENSGT00950000182942.a.b	ENSGT00940000164909.e.a	ENSGT00390000004977.d.a	ENSGT00950000182895.a.b.u.b	ENSGT00940000155515.a.b.b #15	ENSGT00930000150980.a #16	ENSGT00390000010523.c.b #18	ENSGT00940000158904 #19	ENSGT01080000257365.b.a.a.b.a #20	ENSGT00950000183038.a.b.b.b.q #21	ENSGT00390000001718.a #22	ENSGT00940000159241 #23	ENSGT00650000094711	ENSGT00530000063734.a #25	ENSGT00940000158842 #26	ENSGT00940000160160 #27	ENSGT00940000164733	ENSGT00390000014376.c.a	ENSGT00940000161094 #28	ENSGT00940000153988.A #29	ENSGT00940000155773.b #31	ENSGT00940000154574.d #32	ENSGT00940000155655.B #33	ENSGT00940000157230.a #34	ENSGT00940000155359.w.a #35	ENSGT01050000244842.a.b.a.p #37
Zig-zag eel	MODERN SPECIES	13	tra2b (ENSMAMG00000001051)	ENSMAMG00000001075	ENSMAMG00000001094	ENSMAMG00000001160	glb1l (ENSMAMG00000001126)	ENSMAMG00000001186	ENSMAMG00000001376	ENSMAMG00000001425	FMNL2 (ENSMAMG00000001863) #15	prpf40a (ENSMAMG00000002017) #16	RPRM (ENSMAMG00000002055) #18	GALNT13 (ENSMAMG00000002060) #19	KCNJ3 (ENSMAMG00000002093) #20	ENSMAMG00000002101	nr4a2a (ENSMAMG00000002132) #21	ENSMAMG00000002159 #22	GALNT5 (ENSMAMG00000002211) #23	ENSMAMG00000025404	CYTIP (ENSMAMG00000002452) #25	ACVR1C (ENSMAMG00000002492) #26	ENSMAMG00000002523	ENSMAMG00000002537	ENSMAMG00000025700	UPP2 (ENSMAMG00000002582) #28	CCDC148 (ENSMAMG00000002630) #29	PKP4 (ENSMAMG00000002681) #31	dap1b (ENSMAMG00000002892) #32	TANC1 (ENSMAMG00000002928) #33	WDSUB1 (ENSMAMG00000003101) #34	BAZ2B (ENSMAMG00000026743) #35	CD302 (ENSMAMG00000026546) #37
Anabantoidei	ANCESTRAL SPECIES	13	ENSGT00940000154913	ENSGT00950000183009.db.b	ENSGT00940000161051.a.a.a.a.a	ENSGT00940000161051.a.a.a.a.b	ENSGT00390000005911	ENSGT00950000182942.a.b	ENSGT00940000164909.e.a	ENSGT00390000004977.d.a	ENSGT00950000182895.a.b.u.b	ENSGT00940000155515.a.b.b #15	ENSGT00930000150980.a #16	ENSGT00390000010523.c.b #18	ENSGT00940000158904 #19	ENSGT01080000257365.b.a.a.b.a #20	ENSGT00950000183038.a.b.b.b.q #21	ENSGT00390000001718.a #22	ENSGT00940000159241 #23	ENSGT00530000063734.a #25	ENSGT00940000158842 #26	ENSGT00940000160160 #27	ENSGT00940000164733	ENSGT00390000014376.c.a	ENSGT00940000161094 #28	ENSGT00940000153988.A #29	ENSGT00940000155773.b #31	ENSGT00940000154574.d #32	ENSGT00940000155655.B #33	ENSGT00940000157230.a #34	ENSGT00940000155359.w.a #35	ENSGT01050000244842.a.b.a.p #37	ENSGT00940000156082.a.a
Siamese fighting fish	MODERN SPECIES	11	igf2bp2a (ENSBSLG00000005124)	tra2b (ENSBSLG00000004950)	ENSBSLG00000004919	ENSBSLG00000026238	glb1l (ENSBSLG00000026206)	ANKZF1 (ENSBSLG00000026199)	ENSBSLG00000026166	ENSBSLG00000026160	sumo3b (ENSBSLG00000026155)	FMNL2 (ENSBSLG00000026029) #15	prpf40a (ENSBSLG00000025774) #16	rprmb (ENSBSLG00000025760) #18	GALNT13 (ENSBSLG00000025741) #19	KCNJ3 (ENSBSLG00000025732) #20	nr4a2a (ENSBSLG00000025713) #21	ENSBSLG00000025701 #22	GALNT5 (ENSBSLG00000025561) #23	CYTIP (ENSBSLG00000025532) #25	ACVR1C (ENSBSLG00000025513) #26	ACVR1 (ENSBSLG00000025454) #27	ENSBSLG00000025432	upp2 (ENSBSLG00000025417) #28	CCDC148 (ENSBSLG00000025397) #29	PKP4 (ENSBSLG00000024795) #31	dap1b (ENSBSLG00000024725) #32	TANC1 (ENSBSLG00000024074) #33	WDSUB1 (ENSBSLG00000024014) #34	BAZ2B (ENSBSLG00000023896) #35	CD302 (ENSBSLG00000023840) #37	ENSBSLG00000023547	ENSBSLG00000023501
Climbing perch	MODERN SPECIES	12	igf2bp2a (ENSATEG00000020389)	tra2b (ENSATEG00000020354)	ENSATEG00000020337	ENSATEG00000020302	ENSATEG00000020278	glb1l (ENSATEG00000020221)	ENSATEG00000020110	ENSATEG00000020076	ENSATEG00000025684	FMNL2 (ENSATEG00000019742) #15	prpf40a (ENSATEG00000019682) #16	RPRM (ENSATEG00000019661) #18	GALNT13 (ENSATEG00000019632) #19	KCNJ3 (ENSATEG00000025852) #20	nr4a2a (ENSATEG00000019598) #21	ENSATEG00000019568 #22	GALNT5 (ENSATEG00000019155) #23	CYTIP (ENSATEG00000019083) #25	ACVR1C (ENSATEG00000019070) #26	ENSATEG00000019010	ENSATEG00000018984	ENSATEG00000018973	UPP2 (ENSATEG00000018949) #28	CCDC148 (ENSATEG00000018940) #29	PKP4 (ENSATEG00000018827) #31	dap1b (ENSATEG00000018796) #32	ENSATEG00000018786	TANC1 (ENSATEG00000018679) #33	WDSUB1 (ENSATEG00000018643) #34	BAZ2B (ENSATEG00000026380) #35	CD302 (ENSATEG00000026302) #37
Carangaria	ANCESTRAL SPECIES	12	ENSGT00940000161051.a.a.a.a.a	ENSGT00940000154856.A.a.d	ENSGT00940000161051.a.a.a.a.b	ENSGT00390000005911	ENSGT00950000182942.a.b	ENSGT00940000164909.e.a.f	ENSGT00940000164909.e.a.e	ENSGT00390000004977.d.a	ENSGT00950000182895.a.b.u.b	ENSGT00940000155515.a.b.b #15	ENSGT00930000150980.a #16	ENSGT00390000010523.c.b #18	ENSGT00940000158904 #19	ENSGT01080000257365.b.a.a.b.a #20	ENSGT00950000183038.a.b.b.b.q #21	ENSGT00390000001718.a #22	ENSGT00940000159241 #23	ENSGT00650000094711	ENSGT00530000063734.a #25	ENSGT00940000158842 #26	ENSGT00940000164733	ENSGT00390000014376.c.a	ENSGT00940000161094 #28	ENSGT00940000153988.A #29	ENSGT00940000155773.b #31	ENSGT00940000154574.d #32	ENSGT00940000155655.B #33	ENSGT00940000157230.a #34	ENSGT00940000155359.w.a #35	ENSGT00940000179195	ENSGT01050000244842.a.b.a.p #37
Carangaria_A	ANCESTRAL SPECIES	11	ENSGT00940000154913	ENSGT00950000183009.db.b	ENSGT00940000161051.a.a.a.a.a	ENSGT00940000161051.a.a.a.a.b	ENSGT00390000005911	ENSGT00950000182942.a.b	ENSGT00940000164909.e.a.f	ENSGT00390000004977.d.a	ENSGT00950000182895.a.b.u.b	ENSGT00940000155515.a.b.b #15	ENSGT00930000150980.a #16	ENSGT00390000010523.c.b #18	ENSGT00940000158904 #19	ENSGT01080000257365.b.a.a.b.a #20	ENSGT00950000183038.a.b.b.b.q #21	ENSGT00390000001718.a #22	ENSGT00940000159241 #23	ENSGT00650000094711	ENSGT00530000063734.a #25	ENSGT00940000158842 #26	ENSGT00940000164733	ENSGT00390000014376.c.a	ENSGT00940000161094 #28	ENSGT00940000153988.A #29	ENSGT00940000155773.b #31	ENSGT00940000154574.d #32	ENSGT00940000155655.B #33	ENSGT00940000157230.a #34	ENSGT00940000155359.w.a #35	ENSGT01050000244842.a.b.a.p #37	ENSGT00940000156082.a.a
Seriola	ANCESTRAL SPECIES	6	ENSGT00940000154913	ENSGT00950000183009.db.b	ENSGT00940000161051.a.a.a.a.a	ENSGT00940000161051.a.a.a.a.b	ENSGT00390000005911	ENSGT00950000182942.a.b	ENSGT00940000164909.e.a.f	ENSGT00390000004977.d.a	ENSGT00950000182895.a.b.u.b	ENSGT00940000155515.a.b.b #15	ENSGT00930000150980.a #16	ENSGT00390000010523.c.b #18	ENSGT00940000158904 #19	ENSGT01080000257365.b.a.a.b.a #20	ENSGT00950000183038.a.b.b.b.q #21	ENSGT00390000001718.a #22	ENSGT00940000159241 #23	ENSGT00650000094711	ENSGT00530000063734.a #25	ENSGT00940000158842 #26	ENSGT00940000164733	ENSGT00390000014376.c.a	ENSGT00940000161094 #28	ENSGT00940000153988.A #29	ENSGT00940000155773.b #31	ENSGT00940000154574.d #32	ENSGT00940000155655.B #33	ENSGT00940000157230.a #34	ENSGT00940000155359.w.a #35	ENSGT01050000244842.a.b.a.p #37	ENSGT00940000156082.a.a
Greater amberjack	MODERN SPECIES	21	igf2bp2a (ENSSDUG00000017581)	tra2b (ENSSDUG00000017670)	ENSSDUG00000017678	ENSSDUG00000017705	ANKZF1 (ENSSDUG00000017724)	glb1l (ENSSDUG00000017744)	ENSSDUG00000017812	ENSSDUG00000017892	ENSSDUG00000017903	FMNL2 (ENSSDUG00000017925) #15	prpf40a (ENSSDUG00000018063) #16	rprmb (ENSSDUG00000018139) #18	GALNT13 (ENSSDUG00000018149) #19	KCNJ3 (ENSSDUG00000018189) #20	nr4a2a (ENSSDUG00000018206) #21	ENSSDUG00000018225 #22	GALNT5 (ENSSDUG00000018255) #23	CYTIP (ENSSDUG00000018289) #25	ACVR1C (ENSSDUG00000018316) #26	ENSSDUG00000018358	ENSSDUG00000018404	upp2 (ENSSDUG00000018460) #28	CCDC148 (ENSSDUG00000018485) #29	PKP4 (ENSSDUG00000018522) #31	dap1b (ENSSDUG00000018625) #32	TANC1 (ENSSDUG00000018638) #33	WDSUB1 (ENSSDUG00000018691) #34	ENSSDUG00000018710 #35	BAZ2B (ENSSDUG00000018735) #35	CD302 (ENSSDUG00000018769) #37	RBMS1 (ENSSDUG00000018803)
Yellowtail amberjack	MODERN SPECIES	2388	tra2b (ENSSLDG00000007005)	ENSSLDG00000006947	ENSSLDG00000006914	ANKZF1 (ENSSLDG00000006877)	glb1l (ENSSLDG00000006777)	ENSSLDG00000006737	ENSSLDG00000006621	ENSSLDG00000006596	sumo3b (ENSSLDG00000006583)	FMNL2 (ENSSLDG00000006527) #15	prpf40a (ENSSLDG00000006462) #16	rprmb (ENSSLDG00000006442) #18	GALNT13 (ENSSLDG00000006372) #19	KCNJ3 (ENSSLDG00000006337) #20	nr4a2a (ENSSLDG00000006303) #21	ENSSLDG00000006252 #22	ENSSLDG00000006227	GALNT5 (ENSSLDG00000006129) #23	CYTIP (ENSSLDG00000006085) #25	ACVR1C (ENSSLDG00000006052) #26	ENSSLDG00000006006	ENSSLDG00000005975	upp2 (ENSSLDG00000005944) #28	ENSSLDG00000005917 #29	PKP4 (ENSSLDG00000005690) #31	DAPL1 (ENSSLDG00000005624) #32	TANC1 (ENSSLDG00000005455) #33
Barramundi perch	MODERN SPECIES	142	tra2b (ENSLCAG00010023836)	ENSLCAG00010023840	ENSLCAG00010023844	ANKZF1 (ENSLCAG00010023848)	ENSLCAG00010023852	glb1l (ENSLCAG00010023912)	ENSLCAG00010024031	pttg1ipb (ENSLCAG00010024070)	sumo3b (ENSLCAG00010024086)	FMNL2 (ENSLCAG00010024156) #15	prpf40a (ENSLCAG00010024203) #16	rprmb (ENSLCAG00010024312) #18	GALNT13 (ENSLCAG00010024346) #19	KCNJ3 (ENSLCAG00010024414) #20	nr4a2a (ENSLCAG00010024428) #21	ENSLCAG00010024433 #22	GALNT5 (ENSLCAG00010024467) #23	ENSLCAG00010024518	CYTIP (ENSLCAG00010024522) #25	ACVR1C (ENSLCAG00010024528) #26	ENSLCAG00010024537	ENSLCAG00010024542	upp2 (ENSLCAG00010024544) #28	CCDC148 (ENSLCAG00010024546) #29	PKP4 (ENSLCAG00010024641) #31	dap1b (ENSLCAG00010024846) #32	ENSLCAG00010024894	WDSUB1 (ENSLCAG00010024960) #34	BAZ2B (ENSLCAG00010025160) #35	CD302 (ENSLCAG00010025399) #37	RBMS1 (ENSLCAG00010025412)
Ovalentaria	ANCESTRAL SPECIES	14	ENSGT00940000154913	ENSGT00950000183009.db.b	ENSGT00940000161051.a.a.a.a.a	ENSGT00940000154856.A.a.d	ENSGT00390000005911	ENSGT00950000182942.a.b	ENSGT00940000164909.e.a	ENSGT00390000004977.d.a	ENSGT00950000182895.a.b.u.b	ENSGT00940000155515.a.b.b #15	ENSGT00930000150980.a #16	ENSGT00390000010523.c.b #18	ENSGT00940000158904 #19	ENSGT01080000257365.b.a.a.b.a #20	ENSGT00950000183038.a.b.b.b.q #21	ENSGT00390000001718.a #22	ENSGT00940000159241.r #23	ENSGT00650000094711	ENSGT00940000159241.q.a #23	ENSGT00530000063734.a #25	ENSGT00940000158842 #26	ENSGT00940000164733	ENSGT00390000014376.c.a	ENSGT00940000161094 #28	ENSGT00940000153988.A #29	ENSGT00940000178980	ENSGT00940000168997	ENSGT00940000155773.b #31	ENSGT00940000154574.d #32	ENSGT00940000155655.B #33	ENSGT00940000157230.a #34
Ovalentaria_B	ANCESTRAL SPECIES	12	ENSGT00950000183009.db.b	ENSGT00940000161051.a.a.a.a.a	ENSGT00940000154856.A.a.d	ENSGT00390000005911	ENSGT00950000182942.a.b	ENSGT00940000164909.e.a	ENSGT00390000004977.d.a	ENSGT00950000182895.a.b.u.a	ENSGT00950000182895.a.b.v.k	ENSGT00940000155515.a.b.b #15	ENSGT00930000150980.a #16	ENSGT00390000010523.c.b #18	ENSGT00940000158904 #19	ENSGT01080000257365.b.a.a.b.a #20	ENSGT00950000183038.a.b.b.b.q #21	ENSGT00390000001718.a #22	ENSGT00940000159241.r #23	ENSGT00530000063734.a #25	ENSGT00940000158842 #26	ENSGT00940000164733	ENSGT00390000014376.c.a	ENSGT00940000161094 #28	ENSGT00940000153988.A #29	ENSGT00940000178980	ENSGT00940000155773.b #31	ENSGT00940000154574.d #32	ENSGT00940000155655.B #33	ENSGT00940000157230.a #34	ENSGT00940000155359.w.a #35	ENSGT00940000179195	ENSGT01050000244842.a.b.a.p #37
Pomacentridae	ANCESTRAL SPECIES	17	ENSGT00950000183009.db.b	ENSGT00940000161051.a.a.a.a.a	ENSGT00940000154856.A.a.d	ENSGT00390000005911	ENSGT00950000182942.a.b	ENSGT00940000164909.e.a	ENSGT00390000004977.d.a	ENSGT00950000182895.a.b.u.b	ENSGT00950000182895.a.b.u.a	ENSGT00940000155515.a.b.b #15	ENSGT00930000150980.a #16	ENSGT00390000010523.c.b #18	ENSGT00940000158904 #19	ENSGT01080000257365.b.a.a.b.a #20	ENSGT00950000183038.a.b.b.b.q #21	ENSGT00390000001718.a #22	ENSGT00940000159241.q.b #23	ENSGT00940000159241.q.a #23	ENSGT00650000094711	ENSGT00530000063734.a #25	ENSGT00940000158842 #26	ENSGT00940000164733	ENSGT00390000014376.c.a	ENSGT00940000161094 #28	ENSGT00940000153988.A #29	ENSGT00940000178980	ENSGT00940000155773.b #31	ENSGT00940000154574.d #32	ENSGT00940000155655.B #33	ENSGT00940000155655.A.c ##33	ENSGT00940000157230.a #34
Pomacentridae_A	ANCESTRAL SPECIES	14	ENSGT00950000183009.db.b	ENSGT00940000161051.a.a.a.a.a	ENSGT00940000154856.A.a.d	ENSGT00390000005911	ENSGT00950000182942.a.b	ENSGT00940000164909.e.a	ENSGT00390000004977.d.a	ENSGT00950000182895.a.b.u.b	ENSGT00950000182895.a.b.u.a	ENSGT00940000155515.a.b.b #15	ENSGT00930000150980.a #16	ENSGT00390000010523.c.b #18	ENSGT00940000158904 #19	ENSGT01080000257365.b.a.a.b.a #20	ENSGT00950000183038.a.b.b.b.q #21	ENSGT00390000001718.a #22	ENSGT00940000159241.q.b #23	ENSGT00940000159241.q.a #23	ENSGT00650000094711	ENSGT00530000063734.a #25	ENSGT00940000158842 #26	ENSGT00940000164733	ENSGT00390000014376.c.a	ENSGT00940000161094 #28	ENSGT00940000153988.A #29	ENSGT00940000155773.b #31	ENSGT00940000154574.d #32	ENSGT00940000155655.B #33	ENSGT00940000157230.a #34	ENSGT00940000155359.w.a #35	ENSGT01050000244842.a.b.a.p #37
Spiny chromis	MODERN SPECIES	43														KCNJ3 (ENSAPOG00000023238) #20	nr4a2a (ENSAPOG00000023274) #21	ENSAPOG00000000666 #22	ENSAPOG00000023321 #23	ENSAPOG00000023331 #23	ENSAPOG00000023359 #23	CYTIP (ENSAPOG00000023415) #25	ACVR1C (ENSAPOG00000023473) #26	ENSAPOG00000023535	ENSAPOG00000023611	upp2 (ENSAPOG00000023593) #28	CCDC148 (ENSAPOG00000023654) #29	PKP4 (ENSAPOG00000023810) #31	dap1b (ENSAPOG00000023860) #32	WDSUB1 (ENSAPOG00000023883) #34	ENSAPOG00000024054	ENSAPOG00000024082 #35	BAZ2B (ENSAPOG00000024386) #35
Bicolor damselfish	MODERN SPECIES	935											prpf40a (ENSSPAG00000005588) #16	rprmb (ENSSPAG00000005653) #18	GALNT13 (ENSSPAG00000005663) #19	KCNJ3 (ENSSPAG00000005688) #20	nr4a2a (ENSSPAG00000005693) #21	ENSSPAG00000005723 #22	ENSSPAG00000005751 #23	ENSSPAG00000005755 #23	ENSSPAG00000005768
Cichlidae	ANCESTRAL SPECIES	14	ENSGT00940000154913	ENSGT00950000183009.db.b	ENSGT00940000161051.a.a.a.a.a	ENSGT00940000154856.A.a.d	ENSGT00390000005911	ENSGT00950000182942.a.b	ENSGT00940000164909.e.a	ENSGT00390000004977.d.a	ENSGT00950000182895.a.b.v.k	ENSGT00940000155515.a.b.b #15	ENSGT00930000150980.a #16	ENSGT00390000010523.c.b #18	ENSGT00940000158904 #19	ENSGT01080000257365.b.a.a.b.a #20	ENSGT00950000183038.a.b.b.b.q #21	ENSGT00390000001718.a #22	ENSGT00940000159241.r #23	ENSGT00530000063734.a #25	ENSGT00940000158842 #26	ENSGT00940000160160 #27	ENSGT00940000164733	ENSGT00390000014376.c.a	ENSGT00940000161094 #28	ENSGT00940000153988.A #29	ENSGT00940000155773.b #31	ENSGT00940000154574.d #32	ENSGT00940000155655.B #33	ENSGT00940000157230.a #34	ENSGT00940000155359.w.a #35	ENSGT00940000179195	ENSGT01050000244842.a.b.a.p #37
Midas cichlid	MODERN SPECIES	1312	igf2bp2a (ENSACIG00000001308)	tra2b (ENSACIG00000001289)	ENSACIG00000001261	ENSACIG00000001218	ANKZF1 (ENSACIG00000001142)	glb1l (ENSACIG00000001086)	ENSACIG00000000965	ENSACIG00000000950	sumo3a (ENSACIG00000000937)	FMNL2 (ENSACIG00000000871) #15	prpf40a (ENSACIG00000000698) #16	rprmb (ENSACIG00000000687) #18	GALNT13 (ENSACIG00000000648) #19	KCNJ3 (ENSACIG00000000634) #20	nr4a2a (ENSACIG00000000618) #21	ENSACIG00000000585 #22	GALNT5 (ENSACIG00000000459) #23	CYTIP (ENSACIG00000000423) #25	ACVR1C (ENSACIG00000000392) #26	ACVR1 (ENSACIG00000000364) #27	ENSACIG00000000343	upp2 (ENSACIG00000000315) #28	CCDC148 (ENSACIG00000000292) #29	PKP4 (ENSACIG00000000218) #31	dap1b (ENSACIG00000000201) #32	TANC1 (ENSACIG00000021668) #33	ENSACIG00000021660	ENSACIG00000021645 #35	BAZ2B (ENSACIG00000021572) #35	ENSACIG00000021527 #37	RBMS1 (ENSACIG00000021498)
Pseudocrenilabrinae	ANCESTRAL SPECIES	15	ENSGT00940000154913	ENSGT00950000183009.db.b	ENSGT00940000161051.a.a.a.a.a	ENSGT00940000154856.A.a.d	ENSGT00390000005911	ENSGT00950000182942.a.b	ENSGT00940000164909.e.a	ENSGT00390000004977.d.a	ENSGT00950000182895.a.b.v.k	ENSGT00940000155515.a.b.b #15	ENSGT00930000150980.a #16	ENSGT00390000010523.c.b #18	ENSGT00940000158904 #19	ENSGT01080000257365.b.a.a.b.a #20	ENSGT00950000183038.a.b.b.b.q #21	ENSGT00390000001718.a #22	ENSGT00940000159241.r #23	ENSGT00530000063734.a #25	ENSGT00940000158842 #26	ENSGT00940000164733	ENSGT00390000014376.c.a	ENSGT00940000161094 #28	ENSGT00940000153988.A #29	ENSGT00940000155773.b #31	ENSGT00940000154574.d #32	ENSGT00940000155655.B #33	ENSGT00940000157230.a #34	ENSGT00940000155359.w.a #35	ENSGT00940000179195	ENSGT01050000244842.a.b.a.p #37	ENSGT00940000156082.a.a
Nile tilapia	MODERN SPECIES	7	igf2bp2a (ENSONIG00000009029)	tra2b (ENSONIG00000009025)	ENSONIG00000009023	ENSONIG00000009020	ANKZF1 (ENSONIG00000009018)	glb1l (ENSONIG00000009015)	ENSONIG00000009002	pttg1ipb (ENSONIG00000008999)	sumo3b (ENSONIG00000001312)	FMNL2 (ENSONIG00000008993) #15	prpf40a (ENSONIG00000008986) #16	rprmb (ENSONIG00000021106) #18	GALNT13 (ENSONIG00000008980) #19	KCNJ3 (ENSONIG00000040559) #20	nr4a2a (ENSONIG00000008976) #21	ENSONIG00000039674 #22	GALNT5 (ENSONIG00000008975) #23	CYTIP (ENSONIG00000008973) #25	ACVR1C (ENSONIG00000008966) #26	ENSONIG00000008955	ENSONIG00000042262	upp2 (ENSONIG00000008958) #28	PKP4 (ENSONIG00000008949) #31	dapl1 (ENSONIG00000035634) #32	TANC1 (ENSONIG00000008945) #33	WDSUB1 (ENSONIG00000008943) #34	BAZ2B (ENSONIG00000008939) #35	ENSONIG00000042781	CD302 (ENSONIG00000008938) #37	ENSONIG00000008934	tank (ENSONIG00000043230)
Pseudocrenilabrinae_A	ANCESTRAL SPECIES	14	ENSGT00940000154913	ENSGT00950000183009.db.b	ENSGT00940000161051.a.a.a.a.a	ENSGT00940000154856.A.a.d	ENSGT00390000005911	ENSGT00950000182942.a.b	ENSGT00940000164909.e.a	ENSGT00390000004977.d.a	ENSGT00950000182895.a.b.v.k	ENSGT00940000155515.a.b.b #15	ENSGT00930000150980.a #16	ENSGT00390000010523.c.b #18	ENSGT00940000158904 #19	ENSGT01080000257365.b.a.a.b.a #20	ENSGT00950000183038.a.b.b.b.q #21	ENSGT00390000001718.a #22	ENSGT00940000159241.r #23	ENSGT00530000063734.a #25	ENSGT00940000158842 #26	ENSGT00940000164733	ENSGT00390000014376.c.a	ENSGT00940000161094 #28	ENSGT00940000153988.A #29	ENSGT00940000155773.b #31	ENSGT00940000154574.d #32	ENSGT00940000155655.B #33	ENSGT00940000157230.a #34	ENSGT00940000155359.w.a #35	ENSGT00940000179195	ENSGT01050000244842.a.b.a.p #37	ENSGT00940000156082.a.a
Lyretail cichlid	MODERN SPECIES	303	tra2b (ENSNBRG00000016092)	ENSNBRG00000016058	ENSNBRG00000016037	ENSNBRG00000016024	ENSNBRG00000016017	glb1l (ENSNBRG00000015985)	ENSNBRG00000015910	ENSNBRG00000015895	sumo3a (ENSNBRG00000015884)	FMNL2 (ENSNBRG00000015789) #15	prpf40a (ENSNBRG00000015715) #16	rprmb (ENSNBRG00000015702) #18	GALNT13 (ENSNBRG00000015668) #19	KCNJ3 (ENSNBRG00000015655) #20	nr4a2a (ENSNBRG00000015630) #21	ENSNBRG00000015589 #22	GALNT5 (ENSNBRG00000015521) #23	CYTIP (ENSNBRG00000015483) #25	ACVR1C (ENSNBRG00000015465) #26	ENSNBRG00000015421	ENSNBRG00000015405	upp2 (ENSNBRG00000015385) #28	CCDC148 (ENSNBRG00000015355) #29	ENSNBRG00000015341 #31	PKP4 (ENSNBRG00000015314) #31	dap1b (ENSNBRG00000015296) #32	TANC1 (ENSNBRG00000015248) #33	WDSUB1 (ENSNBRG00000015205) #34	ENSNBRG00000015179 #35	CD302 (ENSNBRG00000015172) #37	RBMS1 (ENSNBRG00000015151)
Haplochromini	ANCESTRAL SPECIES	19	ENSGT00940000154913	ENSGT00950000183009.db.b	ENSGT00940000161051.a.a.a.a.a	ENSGT00940000154856.A.a.d	ENSGT00390000005911	ENSGT00950000182942.a.b	ENSGT00940000164909.e.a	ENSGT00390000004977.d.a	ENSGT00950000182895.a.b.v.k	ENSGT00940000155515.a.b.b #15	ENSGT00930000150980.a #16	ENSGT00390000010523.c.b #18	ENSGT00940000158904 #19	ENSGT01080000257365.b.a.a.b.a #20	ENSGT00950000183038.a.b.b.b.q #21	ENSGT00390000001718.a #22	ENSGT00940000159241.r #23	ENSGT00530000063734.a #25	ENSGT00940000158842 #26	ENSGT00940000160160 #27	ENSGT00940000164733	ENSGT00390000014376.c.a	ENSGT00940000161094 #28	ENSGT00940000153988.A #29	ENSGT00940000155773.b #31	ENSGT00940000154574.d #32	ENSGT00940000155655.B #33	ENSGT00940000157230.a #34	ENSGT00940000155359.w.a #35	ENSGT00940000179195	ENSGT01050000244842.a.b.a.p #37
Haplochromini_A	ANCESTRAL SPECIES	19	ENSGT00940000154913	ENSGT00950000183009.db.b	ENSGT00940000161051.a.a.a.a.a	ENSGT00940000154856.A.a.d	ENSGT00390000005911	ENSGT00950000182942.a.b	ENSGT00940000164909.e.a	ENSGT00390000004977.d.a	ENSGT00950000182895.a.b.v.k	ENSGT00940000155515.a.b.b #15	ENSGT00930000150980.a #16	ENSGT00390000010523.c.b #18	ENSGT00940000158904 #19	ENSGT01080000257365.b.a.a.b.a #20	ENSGT00950000183038.a.b.b.b.q #21	ENSGT00390000001718.a #22	ENSGT00940000159241.r #23	ENSGT00530000063734.a #25	ENSGT00940000158842 #26	ENSGT00940000160160 #27	ENSGT00940000164733	ENSGT00390000014376.c.a	ENSGT00940000161094 #28	ENSGT00940000153988.A #29	ENSGT00940000155773.b #31	ENSGT00940000154574.d #32	ENSGT00940000155655.B #33	ENSGT00940000157230.a #34	ENSGT00940000155359.w.a #35	ENSGT01050000244842.a.b.a.p #37	ENSGT00940000156082.a.a
Haplochromini_B	ANCESTRAL SPECIES	17	ENSGT00940000154913	ENSGT00950000183009.db.b	ENSGT00940000161051.a.a.a.a.a	ENSGT00940000154856.A.a.d	ENSGT00390000005911	ENSGT00950000182942.a.b	ENSGT00940000164909.e.a	ENSGT00390000004977.d.a	ENSGT00950000182895.a.b.v.k	ENSGT00940000155515.a.b.b #15	ENSGT00930000150980.a #16	ENSGT00390000010523.c.b #18	ENSGT00940000158904 #19	ENSGT01080000257365.b.a.a.b.a #20	ENSGT00950000183038.a.b.b.b.q #21	ENSGT00390000001718.a #22	ENSGT00940000159241.r #23	ENSGT00530000063734.a #25	ENSGT00940000158842 #26	ENSGT00940000164733	ENSGT00390000014376.c.a	ENSGT00940000161094 #28	ENSGT00940000153988.A #29	ENSGT00940000155773.b #31	ENSGT00940000154574.d #32	ENSGT00940000155655.B.m #33	ENSGT00940000157230.a #34	ENSGT00940000155359.w.a #35	ENSGT01050000244842.a.b.a.p #37	ENSGT00940000156082.a.a	ENSGT00390000008712
Zebra mbuna	MODERN SPECIES	1098	igf2bp2a (ENSMZEG00005007777)	tra2b (ENSMZEG00005007817)	ENSMZEG00005007848	ENSMZEG00005007865	ANKZF1 (ENSMZEG00005007906)	glb1l (ENSMZEG00005007880)	ENSMZEG00005007928	ENSMZEG00005007958	sumo3a (ENSMZEG00005007970)	FMNL2 (ENSMZEG00005008001) #15	prpf40a (ENSMZEG00005008113) #16	rprmb (ENSMZEG00005008152) #18	GALNT13 (ENSMZEG00005008166) #19	KCNJ3 (ENSMZEG00005008210) #20	nr4a2a (ENSMZEG00005008220) #21	ENSMZEG00005008236 #22	GALNT5 (ENSMZEG00005008302) #23	CYTIP (ENSMZEG00005008668) #25	ACVR1C (ENSMZEG00005008690) #26	ENSMZEG00005008721	ENSMZEG00005008772	upp2 (ENSMZEG00005008793) #28	ENSMZEG00005008806 #29	PKP4 (ENSMZEG00005008828) #31	DAPL1 (ENSMZEG00005008853) #32	TANC1 (ENSMZEG00005008882) #33	ENSMZEG00005009014	xrcc5 (ENSMZEG00005009043)	TMEM169 (ENSMZEG00005009179)	PFKL (ENSMZEG00005009192)	MAP3K13 (ENSMZEG00005009269)
Protacanthopterygii	ANCESTRAL SPECIES	18	ENSGT00940000159281	ENSGT00940000160299	ENSGT00390000008812.a.a	ENSGT00940000161562	ENSGT00940000160306	ENSGT00390000001856	ENSGT00940000155248.wb	ENSGT00390000012731.a.b.j	ENSGT00940000157879	ENSGT00940000155515.a.b.b #15	ENSGT00930000150980.a #16	ENSGT00390000010523.c.b #18	ENSGT00940000158904 #19	ENSGT01080000257365.b.a.a.b.a #20	ENSGT00950000183038.a.b.b.b.q #21	ENSGT00390000001718.a #22	ENSGT00940000159241 #23	ENSGT00940000180702	ENSGT00530000063734.a #25	ENSGT00940000158842 #26	ENSGT00940000160160 #27	ENSGT00390000014376.c.a	ENSGT00940000161094 #28	ENSGT00940000153988.A #29	ENSGT00940000155773.b #31	ENSGT00940000154574.d #32	ENSGT00940000155655.B #33	ENSGT00980000201197	ENSGT00390000005372.e	ENSGT00940000165362	ENSGT00940000153173.b.a
Northern pike	MODERN SPECIES	15	gmppaa (ENSELUG00000014925)	pnkd (ENSELUG00000015007)	TMBIM1 (ENSELUG00000015082)	dars1 (ENSELUG00000015137)	cxcr4a (ENSELUG00000000547)	ENSELUG00000015186	stat1b (ENSELUG00000000593)	GLS (ENSELUG00000015999)	FMNL2 (ENSELUG00000016058) #15	prpf40a (ENSELUG00000016169) #16	GALNT13 (ENSELUG00000016250) #19	ENSELUG00000029997	KCNJ3 (ENSELUG00000016274) #20	ENSELUG00000016298	nr4a2a (ENSELUG00000016329) #21	GPD2 (ENSELUG00000000730) #22	GALNT5 (ENSELUG00000018348) #23	ENSELUG00000018364	CYTIP (ENSELUG00000018383) #25	ACVR1C (ENSELUG00000018419) #26	ACVR1 (ENSELUG00000000787) #27	ENSELUG00000018536	upp2 (ENSELUG00000018559) #28	ENSELUG00000018614 #29	PKP4 (ENSELUG00000018860) #31	ENSELUG00000027954	TANC1 (ENSELUG00000000807) #33	BAZ2B (ENSELUG00000019239) #35	ENSELUG00000019309 #37	RBMS1 (ENSELUG00000019328)	ENSELUG00000019342
Salmoninae	ANCESTRAL SPECIES	6	ENSGT00940000158904.cb #19	ENSGT01080000257365.b.a.a.b.a.q #20	ENSGT00950000183038.a.b.b.b.q.a #21	ENSGT00940000161562.a	ENSGT00940000160306.k	ENSGT00390000001856.g	ENSGT00940000155248.wb.b	ENSGT00390000012731.a.b.j	ENSGT00940000157879.ab	ENSGT00940000155515.a.b.b.o #15	ENSGT00930000150980.a.g #16	ENSGT00390000010523.c.b.e #18	ENSGT00940000158904.bb #19	ENSGT01080000257365.b.a.a.b.a.r #20	ENSGT00950000183038.a.b.b.b.q.b #21	ENSGT00390000001718.a #22	ENSGT00940000159241.v #23	ENSGT00530000063734.a.g #25	ENSGT00940000158842.i #26	ENSGT00940000160160.h #27	ENSGT00390000014376.c.a.d	ENSGT00940000161094.k #28	ENSGT00940000155773.b.ab #31	ENSGT00940000154574.d.k.a #32	ENSGT00940000155655.B.l.a #33	ENSGT00940000157230.a #34	ENSGT00940000159241.u #23	ENSGT00940000180702	ENSGT00530000063734.a.h #25	ENSGT00940000158842.j #26	ENSGT00940000160160.g #27
Salmoninae_a	ANCESTRAL SPECIES		ENSGT00940000159281.a	ENSGT00940000160299.g	ENSGT00390000008812.a.a	ENSGT00940000161562.b	ENSGT00940000160306.l	ENSGT00390000001856.h	ENSGT01100000265943	ENSGT00940000155248.wb.a	ENSGT00940000157879.`b	ENSGT00940000155515.a.b.b.p #15	ENSGT00930000150980.a.h #16	ENSGT00390000010523.c.b.f #18	ENSGT00940000158904.cb #19	ENSGT01080000257365.b.a.a.b.a.q #20	ENSGT00950000183038.a.b.b.b.q.a #21	ENSGT00390000001718.a #22	ENSGT00940000159241.v #23	ENSGT00530000063734.a.g #25	ENSGT00940000158842.i #26	ENSGT00940000160160.h #27	ENSGT00390000014376.c.a.d	ENSGT00940000161094.k #28	ENSGT00940000155773.b.ab #31	ENSGT00940000154574.d.k.a #32	ENSGT00940000155655.B.l.a #33	ENSGT00940000157230.a #34	ENSGT00940000155359.w.a.eb #35	ENSGT01050000244842.a.b.a.p.e #37	ENSGT00940000156082.a.a.d	ENSGT00390000008712.a	ENSGT00940000156994.m.a
Salmo	ANCESTRAL SPECIES	15	ENSGT00940000160299.g	ENSGT00390000008812.a.a	ENSGT00940000161562.b	ENSGT00940000160306.l	ENSGT00390000001856.h	ENSGT01100000265943	ENSGT00940000155248.wb.a	ENSGT00940000157879.`b	ENSGT00940000155515.a.b.b.p #15	ENSGT00930000150980.a.h #16	ENSGT00390000010523.c.b.e.b #18	ENSGT00390000010523.c.b.f #18	ENSGT00940000158904.cb #19	ENSGT01080000257365.b.a.a.b.a.q #20	ENSGT00950000183038.a.b.b.b.q.a #21	ENSGT00390000001718.a #22	ENSGT00940000159241.v #23	ENSGT00530000063734.a.g #25	ENSGT00940000158842.i #26	ENSGT00940000160160.h #27	ENSGT00390000014376.c.a.d	ENSGT00940000161094.k #28	ENSGT00940000155773.b.ab #31	ENSGT00940000154574.d.l #32	ENSGT00940000155655.B.l.b.a.b #33	ENSGT00940000157230.a #34	ENSGT00940000155359.w.a.eb #35	ENSGT01050000244842.a.b.a.p.e #37	ENSGT00940000156082.a.a.d	ENSGT00390000008712.a	ENSGT00940000156994.m.a
River trout	DUPLICATION
River trout	MODERN SPECIES	12	wnt10a (ENSSTUG00000012776)	fev (ENSSTUG00000012734)	CRYBA2 (ENSSTUG00000012704)	umps (ENSSTUG00000035222)	KALRN (ENSSTUG00000032884)	ENSSTUG00000032743	ENSSTUG00000032733	MYLK (ENSSTUG00000031301)	FMNL2 (ENSSTUG00000028844) #15	prpf40a (ENSSTUG00000028263) #16	rprmb (ENSSTUG00000028241) #18	GALNT13 (ENSSTUG00000028140) #19	ENSSTUG00000028122	KCNJ3 (ENSSTUG00000028090) #20	nr4a2a (ENSSTUG00000028075) #21	GPD2 (ENSSTUG00000027202) #22	GALNT5 (ENSSTUG00000027149) #23	ENSSTUG00000027137	CYTIP (ENSSTUG00000027126) #25	ACVR1C (ENSSTUG00000027100) #26	ACVR1 (ENSSTUG00000027064) #27	ENSSTUG00000027034	upp2 (ENSSTUG00000026868) #28	CCDC148 (ENSSTUG00000026857) #29	ENSSTUG00000026848	PKP4 (ENSSTUG00000023028) #31	ENSSTUG00000022934	ENSSTUG00000022925	ENSSTUG00000022920	ENSSTUG00000022913	ENSSTUG00000022899
River trout	MODERN SPECIES	16	WNT6 (ENSSTUG00000038303)	wnt10a (ENSSTUG00000038306)	cdk5r2b (ENSSTUG00000038321)	fev (ENSSTUG00000038330)	CRYBA2 (ENSSTUG00000038354)	umps (ENSSTUG00000038368)	KALRN (ENSSTUG00000038584)	MYLK (ENSSTUG00000046755)	FMNL2 (ENSSTUG00000047163) #15	prpf40a (ENSSTUG00000048236) #16	ENSSTUG00000049104	RPRM (ENSSTUG00000049105) #18	GALNT13 (ENSSTUG00000049116) #19	KCNJ3 (ENSSTUG00000049217) #20	nr4a2a (ENSSTUG00000049225) #21	GPD2 (ENSSTUG00000049267) #22	GALNT5 (ENSSTUG00000049289) #23	CYTIP (ENSSTUG00000049297) #25	ACVR1C (ENSSTUG00000049304) #26	ACVR1 (ENSSTUG00000049331) #27	ENSSTUG00000049357	upp2 (ENSSTUG00000049367) #28	PKP4 (ENSSTUG00000049370) #31	dap1b (ENSSTUG00000049386) #32	TANC1 (ENSSTUG00000049396) #33	WDSUB1 (ENSSTUG00000049461) #34	BAZ2B (ENSSTUG00000049500) #35	CD302 (ENSSTUG00000049560) #37	RBMS1 (ENSSTUG00000049569)	tank (ENSSTUG00000049679)	tbr1b (ENSSTUG00000049682)
Atlantic salmon	DUPLICATION
Atlantic salmon	MODERN SPECIES	13	wnt6 (ENSSSAG00000057025)	wnt10a (ENSSSAG00000064440)	fev (ENSSSAG00000057035)	CRYBA2 (ENSSSAG00000057041)	umps (ENSSSAG00000057050)	KALRN (ENSSSAG00000057517)	ENSSSAG00000097641	MYLK (ENSSSAG00000071373)	ENSSSAG00000074064 #15	prpf40a (ENSSSAG00000074368) #16	ENSSSAG00000103862	GALNT13 (ENSSSAG00000074894) #19	RPRM (ENSSSAG00000112429) #18	KCNJ3 (ENSSSAG00000098572) #20	nr4a2a (ENSSSAG00000074943) #21	GPD2 (ENSSSAG00000075008) #22	ENSSSAG00000119712 #23	ENSSSAG00000075754	cytip (ENSSSAG00000075756) #25	ACVR1C (ENSSSAG00000075763) #26	acvr1 (ENSSSAG00000075771) #27	ENSSSAG00000075828	ENSSSAG00000116525	ENSSSAG00000082134 #28	UPP2 (ENSSSAG00000075834) #28	CCDC148 (ENSSSAG00000090873) #29	PKP4 (ENSSSAG00000075857) #31	ENSSSAG00000076051	TANC1 (ENSSSAG00000076056) #33	ENSSSAG00000113097	BAZ2B (ENSSSAG00000076222) #35
Atlantic salmon	MODERN SPECIES	17	WNT6 (ENSSSAG00000064418)	wnt10a (ENSSSAG00000057031)	cdk5r2b (ENSSSAG00000091774)	fev (ENSSSAG00000084432)	CRYBA2 (ENSSSAG00000064540)	umps (ENSSSAG00000064554)	ENSSSAG00000064559	ENSSSAG00000064951	ENSSSAG00000074164	FMNL2 (ENSSSAG00000075300) #15	prpf40a (ENSSSAG00000075700) #16	RPRM (ENSSSAG00000121047) #18	GALNT13 (ENSSSAG00000075780) #19	KCNJ3 (ENSSSAG00000076284) #20	nr4a2a (ENSSSAG00000076290) #21	GPD2 (ENSSSAG00000076318) #22	GALNT5 (ENSSSAG00000076334) #23	CYTIP (ENSSSAG00000076351) #25	ACVR1C (ENSSSAG00000076363) #26	ACVR1 (ENSSSAG00000076395) #27	ENSSSAG00000076561	UPP2 (ENSSSAG00000076570) #28	PKP4 (ENSSSAG00000076701) #31	ENSSSAG00000078717	TANC1 (ENSSSAG00000078739) #33	ENSSSAG00000096166	WDSUB1 (ENSSSAG00000078899) #34	BAZ2B (ENSSSAG00000078915) #35	CD302 (ENSSSAG00000078951) #37	RBMS1 (ENSSSAG00000078960)	tank (ENSSSAG00000079057)
Oncorhynchus	ANCESTRAL SPECIES	3	ENSGT01050000244857.B.b.f	ENSGT00940000159281.a	ENSGT00940000160299.g	ENSGT00390000008812.a.a	ENSGT00940000161562.b	ENSGT00940000160306.l	ENSGT00390000001856.h	ENSGT00940000155248.wb.a	ENSGT00940000157879.`b	ENSGT00940000155515.a.b.b.p #15	ENSGT00930000150980.a.h #16	ENSGT00390000010523.c.b.f #18	ENSGT00940000158904.cb #19	ENSGT01080000257365.b.a.a.b.a.q #20	ENSGT00950000183038.a.b.b.b.q.a #21	ENSGT00390000001718.a #22	ENSGT00940000159241.v #23	ENSGT00530000063734.a.g #25	ENSGT00940000158842.i #26	ENSGT00940000160160.h #27	ENSGT00390000014376.c.a.d	ENSGT00940000161094.k #28	ENSGT00940000155773.b.ab #31	ENSGT00940000154574.d.k.a #32	ENSGT00940000155655.B.l.a #33	ENSGT00940000157230.a #34	ENSGT00940000155359.w.a.eb #35	ENSGT01050000244842.a.b.a.p.e #37	ENSGT00940000156082.a.a.d	ENSGT00390000008712.a	ENSGT00940000156994.m.a
Rainbow trout	DUPLICATION
Rainbow trout	MODERN SPECIES	14	CHPF (ENSOMYG00000010632)	WNT6 (ENSOMYG00000010615)	wnt10a (ENSOMYG00000010608)	fev (ENSOMYG00000010589)	CRYBA2 (ENSOMYG00000010543)	umps (ENSOMYG00000046929)	KALRN (ENSOMYG00000046648)	ENSOMYG00000046392	MYLK (ENSOMYG00000046363)	FMNL2 (ENSOMYG00000044855) #15	prpf40a (ENSOMYG00000043873) #16	RPRM (ENSOMYG00000043712) #18	GALNT13 (ENSOMYG00000043657) #19	KCNJ3 (ENSOMYG00000058452) #20	nr4a2a (ENSOMYG00000043600) #21	GPD2 (ENSOMYG00000043281) #22	GALNT5 (ENSOMYG00000043202) #23	ENSOMYG00000043192	CYTIP (ENSOMYG00000043188) #25	ACVR1C (ENSOMYG00000043181) #26	ACVR1 (ENSOMYG00000043166) #27	ENSOMYG00000043142	UPP2 (ENSOMYG00000043135) #28	CCDC148 (ENSOMYG00000043128) #29	PKP4 (ENSOMYG00000041222) #31	DAPL1 (ENSOMYG00000041061) #32	ENSOMYG00000070838	TANC1 (ENSOMYG00000040484) #33	ENSOMYG00000040364	BAZ2B (ENSOMYG00000038798) #35	ENSOMYG00000038160 #37
Rainbow trout	MODERN SPECIES	21	fev (ENSOMYG00000039514)	CRYBA2 (ENSOMYG00000039532)	umps (ENSOMYG00000039546)	ENSOMYG00000071189	ENSOMYG00000040032	ENSOMYG00000040753	ENSOMYG00000053298	FMNL2 (ENSOMYG00000041024) #15	prpf40a (ENSOMYG00000041712) #16	ENSOMYG00000074072	RPRM (ENSOMYG00000043386) #18	GALNT13 (ENSOMYG00000043487) #19	KCNJ3 (ENSOMYG00000043796) #20	ENSOMYG00000013387	nr4a2a (ENSOMYG00000043806) #21	GPD2 (ENSOMYG00000043820) #22	GALNT5 (ENSOMYG00000043850) #23	CYTIP (ENSOMYG00000043864) #25	ACVR1C (ENSOMYG00000043881) #26	ACVR1 (ENSOMYG00000043929) #27	ENSOMYG00000043976	UPP2 (ENSOMYG00000043996) #28	PKP4 (ENSOMYG00000044256) #31	DAPL1 (ENSOMYG00000046289) #32	TANC1 (ENSOMYG00000046375) #33	WDSUB1 (ENSOMYG00000046741) #34	BAZ2B (ENSOMYG00000046927) #35	CD302 (ENSOMYG00000047074) #37	RBMS1 (ENSOMYG00000047113)	tank (ENSOMYG00000047138)	tbr1b (ENSOMYG00000047139)
Oncorhynchus_a	ANCESTRAL SPECIES	8	ENSGT01050000244857.B.b.f	ENSGT00940000159281.a	ENSGT00940000160299.g	ENSGT00390000008812.a.a	ENSGT00940000161562.b	ENSGT00940000160306.l	ENSGT00390000001856.h	ENSGT00940000155248.wb.a	ENSGT00940000157879.`b	ENSGT00940000155515.a.b.b.p #15	ENSGT00930000150980.a.h #16	ENSGT00390000010523.c.b.f #18	ENSGT00940000158904.cb #19	ENSGT01080000257365.b.a.a.b.a.q #20	ENSGT00950000183038.a.b.b.b.q.a #21	ENSGT00390000001718.a #22	ENSGT00940000159241.v #23	ENSGT00530000063734.a.g #25	ENSGT00940000158842.i #26	ENSGT00940000160160.h #27	ENSGT00390000014376.c.a.d	ENSGT00940000161094.k #28	ENSGT00940000155773.b.ab #31	ENSGT00940000154574.d.k.a #32	ENSGT00940000155655.B.l.a #33	ENSGT00940000157230.a #34	ENSGT00940000155359.w.a.eb #35	ENSGT01050000244842.a.b.a.p.e #37	ENSGT00940000156082.a.a.d	ENSGT00390000008712.a	ENSGT00940000156994.m.a
Coho salmon	DUPLICATION
Coho salmon	MODERN SPECIES	18	ENSOKIG00005007394	CHPF (ENSOKIG00005007410)	WNT6 (ENSOKIG00005007417)	wnt10a (ENSOKIG00005007424)	fev (ENSOKIG00005007430)	CRYBA2 (ENSOKIG00005007441)	umps (ENSOKIG00005007452)	KALRN (ENSOKIG00005007742)	ENSOKIG00005011878	MYLK (ENSOKIG00005011966)	FMNL2 (ENSOKIG00005012322) #15	prpf40a (ENSOKIG00005012856) #16	GALNT13 (ENSOKIG00005014649) #19	KCNJ3 (ENSOKIG00005014944) #20	nr4a2a (ENSOKIG00005014961) #21	GPD2 (ENSOKIG00005015049) #22	GALNT5 (ENSOKIG00005015973) #23	ENSOKIG00005016002	CYTIP (ENSOKIG00005016013) #25	ACVR1C (ENSOKIG00005016030) #26	ACVR1 (ENSOKIG00005016076) #27	ENSOKIG00005016119	UPP2 (ENSOKIG00005016170) #28	CCDC148 (ENSOKIG00005016185) #29	PKP4 (ENSOKIG00005016223) #31	DAPL1 (ENSOKIG00005016470) #32	TANC1 (ENSOKIG00005016578) #33	BAZ2B (ENSOKIG00005018291) #35	ENSOKIG00005025103 #37	RBMS1 (ENSOKIG00005025179)	tank (ENSOKIG00005025566)
Coho salmon	MODERN SPECIES	11	CHPF (ENSOKIG00005019294)	WNT6 (ENSOKIG00005019307)	wnt10a (ENSOKIG00005019322)	cdk5r2b (ENSOKIG00005019332)	fev (ENSOKIG00005019341)	CRYBA2 (ENSOKIG00005019353)	umps (ENSOKIG00005019377)	KALRN (ENSOKIG00005019454)	MYLK (ENSOKIG00005020739)	FMNL2 (ENSOKIG00005021739) #15	prpf40a (ENSOKIG00005024797) #16	RPRM (ENSOKIG00005026419) #18	GALNT13 (ENSOKIG00005026469) #19	KCNJ3 (ENSOKIG00005000026) #20	nr4a2a (ENSOKIG00005000063) #21	GPD2 (ENSOKIG00005000089) #22	GALNT5 (ENSOKIG00005000111) #23	CYTIP (ENSOKIG00005000134) #25	ACVR1C (ENSOKIG00005000151) #26	ACVR1 (ENSOKIG00005000228) #27	ENSOKIG00005000308	upp2 (ENSOKIG00005000321) #28	PKP4 (ENSOKIG00005000498) #31	DAPL1 (ENSOKIG00005000807) #32	TANC1 (ENSOKIG00005001030) #33	WDSUB1 (ENSOKIG00005001683) #34	BAZ2B (ENSOKIG00005001710) #35	CD302 (ENSOKIG00005001891) #37	RBMS1 (ENSOKIG00005002101)	tank (ENSOKIG00005002550)	tbr1b (ENSOKIG00005002564)
Chinook salmon	DUPLICATION
Chinook salmon	MODERN SPECIES	18	WNT6 (ENSOTSG00005037384)	wnt10a (ENSOTSG00005037385)	CRYBA2 (ENSOTSG00005037386)	fev (ENSOTSG00005037387)	umps (ENSOTSG00005037389)	KALRN (ENSOTSG00005037490)	ENSOTSG00005041683	ENSOTSG00005041684	MYLK (ENSOTSG00005041694)	FMNL2 (ENSOTSG00005042789) #15	prpf40a (ENSOTSG00005042971) #16	rprmb (ENSOTSG00005044463) #18	GALNT13 (ENSOTSG00005044464) #19	KCNJ3 (ENSOTSG00005044553) #20	nr4a2a (ENSOTSG00005044554) #21	GPD2 (ENSOTSG00005044571) #22	GALNT5 (ENSOTSG00005044708) #23	ENSOTSG00005044710	CYTIP (ENSOTSG00005044712) #25	ACVR1C (ENSOTSG00005044713) #26	ACVR1 (ENSOTSG00005044715) #27	ENSOTSG00005044719	upp2 (ENSOTSG00005044723) #28	CCDC148 (ENSOTSG00005035920) #29	PKP4 (ENSOTSG00005035922) #31	ENSOTSG00005036070	TANC1 (ENSOTSG00005036074) #33	BAZ2B (ENSOTSG00005037276) #35	ENSOTSG00005041450 #37	RBMS1 (ENSOTSG00005041458)	tank (ENSOTSG00005041710)
Chinook salmon	DUPLICATION
Chinook salmon	MODERN SPECIES	60		ENSOTSG00005031133	cdk5r2b (ENSOTSG00005031134)	fev (ENSOTSG00005031135)	CRYBA2 (ENSOTSG00005031137)	umps (ENSOTSG00005031138)	KALRN (ENSOTSG00005031202)	MYLK (ENSOTSG00005032170)	ENSOTSG00005032249	FMNL2 (ENSOTSG00005032251) #15	prpf40a (ENSOTSG00005032431) #16	RPRM (ENSOTSG00005037264) #18	GALNT13 (ENSOTSG00005037266) #19	KCNJ3 (ENSOTSG00005037720) #20	nr4a2a (ENSOTSG00005037723) #21	GPD2 (ENSOTSG00005037817) #22	GALNT5 (ENSOTSG00005037818) #23	CYTIP (ENSOTSG00005037823) #25	ACVR1C (ENSOTSG00005037826) #26	ACVR1 (ENSOTSG00005037837) #27	ENSOTSG00005038850	upp2 (ENSOTSG00005038851) #28
Chinook salmon	MODERN SPECIES	22	WNT6 (ENSOTSG00005020641)	wnt10a (ENSOTSG00005020642)	cdk5r2b (ENSOTSG00005020643)	fev (ENSOTSG00005020644)	CRYBA2 (ENSOTSG00005020647)	umps (ENSOTSG00005020648)	KALRN (ENSOTSG00005020668)	MYLK (ENSOTSG00005022374)	ENSOTSG00005022389	FMNL2 (ENSOTSG00005022391) #15	prpf40a (ENSOTSG00005022549) #16	RPRM (ENSOTSG00005028090) #18	GALNT13 (ENSOTSG00005028094) #19	KCNJ3 (ENSOTSG00005028247) #20	nr4a2a (ENSOTSG00005028248) #21	GPD2 (ENSOTSG00005028254) #22	GALNT5 (ENSOTSG00005028272) #23	CYTIP (ENSOTSG00005028315) #25	ACVR1C (ENSOTSG00005028316) #26	ACVR1 (ENSOTSG00005028317) #27	ENSOTSG00005028981	upp2 (ENSOTSG00005028986) #28	PKP4 (ENSOTSG00005029048) #31	dap1b (ENSOTSG00005039915) #32	TANC1 (ENSOTSG00005039938) #33	WDSUB1 (ENSOTSG00005040318) #34	BAZ2B (ENSOTSG00005040357) #35	CD302 (ENSOTSG00005041809) #37	RBMS1 (ENSOTSG00005041810)	tank (ENSOTSG00005041921)	tbr1b (ENSOTSG00005041922)
Huchen	DUPLICATION
Huchen	MODERN SPECIES	209										FMNL2 (ENSHHUG00000043745) #15	prpf40a (ENSHHUG00000044270) #16	rprmb (ENSHHUG00000044437) #18	GALNT13 (ENSHHUG00000044446) #19	KCNJ3 (ENSHHUG00000044526) #20	nr4a2a (ENSHHUG00000044532) #21	GPD2 (ENSHHUG00000044547) #22	GALNT5 (ENSHHUG00000044596) #23	CYTIP (ENSHHUG00000044601) #25	ACVR1C (ENSHHUG00000044608) #26	ACVR1 (ENSHHUG00000044741) #27	ENSHHUG00000044777	upp2 (ENSHHUG00000044787) #28	CCDC148 (ENSHHUG00000044797) #29	PKP4 (ENSHHUG00000044802) #31	dap1b (ENSHHUG00000044854) #32	ENSHHUG00000044859
Huchen	MODERN SPECIES	443															nr4a2a (ENSHHUG00000037078) #21	GPD2 (ENSHHUG00000037051) #22	ENSHHUG00000037048	GALNT5 (ENSHHUG00000037043) #23	CYTIP (ENSHHUG00000037030) #25	ACVR1C (ENSHHUG00000037001) #26	ACVR1 (ENSHHUG00000036967) #27	ENSHHUG00000036942	upp2 (ENSHHUG00000036932) #28	PKP4 (ENSHHUG00000036754) #31	ENSHHUG00000036743	ENSHHUG00000036727 #33
Otomorpha	ANCESTRAL SPECIES	39	ENSGT00940000161562	ENSGT00940000160306	ENSGT00390000001856	ENSGT00940000175555	ENSGT00940000166969.a	ENSGT00940000155248.wb	ENSGT00940000157879	ENSGT00940000155515.a.b.b #15	ENSGT00930000150980.a #16	ENSGT00940000155515.a.a ##15	ENSGT00390000009987 #17	ENSGT00390000010523.c.b #18	ENSGT00940000158904 #19	ENSGT01080000257365.b.a.a.b.a #20	ENSGT00950000183038.a.b.b.b.q #21	ENSGT00390000001718.a #22	ENSGT00940000159241 #23	ENSGT00530000063734.a #25	ENSGT00940000158842 #26	ENSGT00940000160160 #27	ENSGT00390000014376.d	ENSGT00940000164733	ENSGT00390000014376.c.a	ENSGT00940000161094 #28	ENSGT00940000153988.A #29	ENSGT00940000155773.b #31	ENSGT00940000154574.d #32	ENSGT00940000155655.B #33	ENSGT00940000157230.a #34	ENSGT00940000155359.w.a #35	ENSGT01050000244842.a.b.a.p #37
Clupeiformes	ANCESTRAL SPECIES	30	ENSGT01050000244857.B.b.h	ENSGT00940000159281	ENSGT00940000160299	ENSGT00390000008812.a.a	ENSGT00940000161562	ENSGT00940000160306.m	ENSGT00390000001856	ENSGT00940000155248.wb	ENSGT00940000157879	ENSGT00940000155515.a.b.b #15	ENSGT00930000150980.a #16	ENSGT00390000010523.c.b #18	ENSGT00940000158904 #19	ENSGT01080000257365.b.a.a.b.a #20	ENSGT00950000183038.a.b.b.b.q #21	ENSGT00390000001718.a #22	ENSGT00940000159241 #23	ENSGT00530000063734.a #25	ENSGT00940000158842 #26	ENSGT00940000160160 #27	ENSGT00390000014376.d	ENSGT00940000164733	ENSGT00390000014376.c.a	ENSGT00940000161094 #28	ENSGT00940000153988.A #29	ENSGT00940000155773.b #31	ENSGT00940000154574.d #32	ENSGT00940000155655.B #33	ENSGT00940000157230.a #34	ENSGT00940000155359.w.a #35	ENSGT01050000244842.a.b.a.p #37
Atlantic herring	MODERN SPECIES	11	cdk5r2b (ENSCHAG00000025475)	fev (ENSCHAG00000025476)	CRYBA2 (ENSCHAG00000025479)	umps (ENSCHAG00000025483)	ENSCHAG00000025486	KALRN (ENSCHAG00000025512)	ENSCHAG00000025846	MYLK (ENSCHAG00000025851)	FMNL2 (ENSCHAG00000026012) #15	prpf40a (ENSCHAG00000026357) #16	ENSCHAG00000026716	rprma (ENSCHAG00000026717) #18	GALNT13 (ENSCHAG00000026719) #19	KCNJ3 (ENSCHAG00000026736) #20	nr4a2a (ENSCHAG00000026743) #21	GPD2 (ENSCHAG00000026773) #22	GALNT5 (ENSCHAG00000026960) #23	CYTIP (ENSCHAG00000026962) #25	ACVR1C (ENSCHAG00000026965) #26	ENSCHAG00000026969	ENSCHAG00000026973	upp2 (ENSCHAG00000026996) #28	upp2 (ENSCHAG00000026978) #28	CCDC148 (ENSCHAG00000027001) #29	PKP4 (ENSCHAG00000027034) #31	dap1b (ENSCHAG00000027330) #32	ENSCHAG00000027333	TANC1 (ENSCHAG00000027352) #33	WDSUB1 (ENSCHAG00000027451) #34	BAZ2B (ENSCHAG00000027462) #35	ENSCHAG00000027516 #37
Denticle herring	MODERN SPECIES	19	wnt10a (ENSDCDG00000034953)	cdk5r2b (ENSDCDG00000034948)	fev (ENSDCDG00000034947)	CRYBA2 (ENSDCDG00000034945)	umps (ENSDCDG00000034944)	KALRN (ENSDCDG00000033515)	MYLK (ENSDCDG00000033418)	FMNL2 (ENSDCDG00000032962) #15	rprma (ENSDCDG00000032936) #18	GALNT13 (ENSDCDG00000032871) #19	prpf40a (ENSDCDG00000031823) #16	rprma (ENSDCDG00000031741) #18	GALNT13 (ENSDCDG00000031633) #19	KCNJ3 (ENSDCDG00000031627) #20	nr4a2a (ENSDCDG00000031626) #21	ENSDCDG00000031624 #22	GALNT5 (ENSDCDG00000031623) #23	ENSDCDG00000031622	CYTIP (ENSDCDG00000031618) #25	ACVR1C (ENSDCDG00000031574) #26	ACVR1 (ENSDCDG00000031555) #27	ENSDCDG00000031550	upp2 (ENSDCDG00000031548) #28	CCDC148 (ENSDCDG00000031545) #29	PKP4 (ENSDCDG00000031226) #31	dap1b (ENSDCDG00000031203) #32	TANC1 (ENSDCDG00000030336) #33	BAZ2B (ENSDCDG00000029109) #35	ENSDCDG00000029094 #37	RBMS1 (ENSDCDG00000028651)	tank (ENSDCDG00000028644)
Osteoglossocephalai	ANCESTRAL SPECIES	766															ENSGT00950000183038.a.b.b.b.r #21	ENSGT00390000001718.b #22
Osteoglossiformes	ANCESTRAL SPECIES	389															ENSGT00950000183038.a.b.b.b.r #21	ENSGT00390000001718.b #22	ENSGT00530000063734.a.c #25	ENSGT00940000158842.l #26	ENSGT00940000164733	ENSGT00390000014376.b	ENSGT00940000161094 #28	ENSGT00940000155773.a ##31	ENSGT00940000177866	ENSGT00940000155655.B.h #33	ENSGT00940000157230.a #34	ENSGT00940000155359.w.b #35
Asian bonytongue	MODERN SPECIES	5	ENSSFOG00015027617	ENSSFOG00015024451	ENSSFOG00015029738	ENSSFOG00015029328	MYO1B (ENSSFOG00015017799)	pofut2 (ENSSFOG00015017724)	ENSSFOG00015017681	vwc2l (ENSSFOG00015025867)	IKZF2 (ENSSFOG00015024820)	ERBB4 (ENSSFOG00015017584)	lancl1 (ENSSFOG00015017529)	myl1 (ENSSFOG00015016288)	acadl (ENSSFOG00015016181)	ENSSFOG00015031116	NR4A2 (ENSSFOG00015016157) #21	gpd2 (ENSSFOG00015016057) #22	ENSSFOG00015016032 #25	ACVR1C (ENSSFOG00015016015) #26	ENSSFOG00015023204	ENSSFOG00015032322	upp2 (ENSSFOG00015025462) #28	ENSSFOG00015015851 ##31	ENSSFOG00015030203	TANC1 (ENSSFOG00015015631) #33	BAZ2B (ENSSFOG00015026021) #35	ENSSFOG00015015499 #36	LY75 (ENSSFOG00015014625) ##37	ENSSFOG00015014493	psmd14 (ENSSFOG00015014447)	SLC4A10 (ENSSFOG00015014344)	gcga (ENSSFOG00015014318)
P. kingsleyae	MODERN SPECIES	35	asic4a (ENSPKIG00000011378)	CHPF (ENSPKIG00000011411)	ENSPKIG00000011428	wnt10a (ENSPKIG00000011444)	cdk5r2b (ENSPKIG00000011464)	CRYBA2 (ENSPKIG00000011485)	KALRN (ENSPKIG00000011533)	MYLK (ENSPKIG00000011697)	FMNL2 (ENSPKIG00000011874) #15	ARL6IP6 (ENSPKIG00000011962) #17	rprma (ENSPKIG00000011972) #18	ENSPKIG00000011978 #19	GALNT13 (ENSPKIG00000011991) #19	KCNJ3 (ENSPKIG00000012012) #20	NR4A2 (ENSPKIG00000012038) #21	gpd2 (ENSPKIG00000012082) #22	CYTIP (ENSPKIG00000012227) #25	ENSPKIG00000012244 #26	ENSPKIG00000012273	upp2 (ENSPKIG00000012309) #28	ENSPKIG00000012335 ##31	DAPL1 (ENSPKIG00000012371) #32	TANC1 (ENSPKIG00000012454) #33	WDSUB1 (ENSPKIG00000012578) #34	ENSPKIG00000012597 #35	BAZ2B (ENSPKIG00000012631) #35	ENSPKIG00000012680 #36	LY75 (ENSPKIG00000012710) ##37	RBMS1 (ENSPKIG00000012818)	psmd14 (ENSPKIG00000012919)	SLC4A10 (ENSPKIG00000013076)
Clupeocephala	ANCESTRAL SPECIES	711															ENSGT00950000183038.a.b.b.b.r #21	ENSGT00390000001718.b #22
Euteleosteomorpha	ANCESTRAL SPECIES	534															ENSGT00950000183038.a.b.b.b.r #21	ENSGT00390000001718.b #22
Acanthomorphata	ANCESTRAL SPECIES	351														ENSGT00940000154657.A.d	ENSGT00950000183038.a.b.b.b.r #21	ENSGT00390000001718.b #22	ENSGT00390000004923.C	ENSGT00940000162768.B.b	ENSGT00940000154360.A.b.b
Euacanthomorphacea	ANCESTRAL SPECIES	26	ENSGT00950000182882.A.b.b.f	ENSGT00940000164444.b	ENSGT00390000009940	ENSGT00940000155009.b	ENSGT00940000166110	ENSGT00940000154851.A	ENSGT00940000159723	ENSGT00940000158687.a.b	ENSGT00940000156634.b	ENSGT00940000158614	ENSGT00940000158299.b	ENSGT00940000164908	ENSGT00940000157360.c	ENSGT00940000156807.f	ENSGT00940000154657.A.d	ENSGT00390000001718.b #22	ENSGT00390000004923.C	ENSGT00940000162768.B.b	ENSGT00940000154360.A.b.b	ENSGT00940000155749.d	ENSGT00510000047334	ENSGT00550000074981	ENSGT00950000183140.a.a	ENSGT00940000168325	ENSGT00940000165235.a.a	ENSGT00390000006826	ENSGT00950000183184.a.a.b	ENSGT00390000017860.a.b.f	ENSGT00390000011204	ENSGT00940000164385.a.a.a.b	ENSGT00390000017581.b.b
Percomorphaceae	ANCESTRAL SPECIES	22	ENSGT00950000183028.a.a.a.g.b	ENSGT00940000165423.a.b	ENSGT00940000156089.e.a	ENSGT00940000176171	ENSGT00500000044939	ENSGT00390000005159.j	ENSGT00940000156444.c	ENSGT00940000155861.C.e	ENSGT00940000158299.b	ENSGT00940000164908	ENSGT00940000157360.c	ENSGT00940000156807.f	ENSGT00940000154657.A.d	ENSGT00950000183165.a.a.a	ENSGT00950000183038.a.b.b.b.r #21	ENSGT00390000001718.b #22	ENSGT00390000004923.C	ENSGT00940000162768.B.b	ENSGT00940000154360.A.b.b	ENSGT00940000155749.d	ENSGT00510000047334	ENSGT00550000074981	ENSGT00950000183140.a.a	ENSGT00940000168325	ENSGT00940000165235.a.a	ENSGT00390000006826	ENSGT00950000183184.a.a.b	ENSGT00390000017860.a.b.f	ENSGT00390000011204	ENSGT00940000164385.a.a.a.b	ENSGT00390000017581.b.b
Tiger tail seahorse	MODERN SPECIES	404	MBD5 (ENSHCOG00000015223)	ENSHCOG00000015259 ##31	ENSHCOG00000015273	ENSHCOG00000015424	abi2b (ENSHCOG00000015448)	cyp20a1 (ENSHCOG00000015947)	tmem237b (ENSHCOG00000015966)	MPP4 (ENSHCOG00000016686)	ALS2 (ENSHCOG00000016773)	zgc:113142 (ENSHCOG00000016820)	inpp4ab (ENSHCOG00000016979)	SLC9A2 (ENSHCOG00000017234)	ENSHCOG00000017484	TUBA4A (ENSHCOG00000017595)	NR4A2 (ENSHCOG00000017757) #21	gpd2 (ENSHCOG00000017803) #22	ENSHCOG00000017845	ENSHCOG00000017868	LRRC3 (ENSHCOG00000017887)	ATP7B (ENSHCOG00000017943)	eed (ENSHCOG00000018019)	pwp2h (ENSHCOG00000018121)	ENSHCOG00000018137	ENSHCOG00000018153	ENSHCOG00000018182	ENSHCOG00000018192	ENSHCOG00000018263	ENSHCOG00000018303	gpd1c (ENSHCOG00000018335)	ENSHCOG00000018361	OSBPL11 (ENSHCOG00000018415)
Percomorphaceae_B	ANCESTRAL SPECIES	22	ENSGT00940000165423.a.b	ENSGT00610000086518.b.a	ENSGT00940000156089.e.a	ENSGT00940000176171	ENSGT00500000044939	ENSGT00390000005159.j	ENSGT00940000156444.c	ENSGT00940000155861.C.e	ENSGT00940000158299.b	ENSGT00940000164908	ENSGT00940000157360.c	ENSGT00940000156807.f	ENSGT00940000154657.A.d	ENSGT00950000183165.a.a.a	ENSGT00950000183038.a.b.b.b.r #21	ENSGT00390000001718.b #22	ENSGT00390000004923.C	ENSGT00940000162768.B.b	ENSGT00940000154360.A.b.b	ENSGT00940000155749.d	ENSGT00510000047334	ENSGT00550000074981	ENSGT00950000183140.a.a	ENSGT00940000155675.p.b	ENSGT00940000177931	ENSGT00940000168325	ENSGT00940000165235.a.a	ENSGT00390000006826	ENSGT00950000183184.a.a.b	ENSGT00390000017860.a.b.f	ENSGT00390000011204
Ovalentaria	ANCESTRAL SPECIES	23	ENSGT00940000165423.a.b	ENSGT00610000086518.b.a	ENSGT00940000156089.e.a	ENSGT00940000176171	ENSGT00500000044939	ENSGT00390000005159.j	ENSGT00940000156444.c	ENSGT00940000155861.C.e	ENSGT00940000158299.b	ENSGT00940000164908	ENSGT00940000157360.c	ENSGT00940000156807.f	ENSGT00940000154657.A.d	ENSGT00950000183165.a.a.a	ENSGT00950000183038.a.b.b.b.r #21	ENSGT00390000001718.b #22	ENSGT00390000004923.C	ENSGT00940000162768.B.b	ENSGT00940000154360.A.b.b	ENSGT00940000155749.d	ENSGT00510000047334	ENSGT00550000074981	ENSGT00950000183140.a.a	ENSGT00940000168325	ENSGT00940000177931	ENSGT00940000155675.p.b	ENSGT00940000165235.a.a	ENSGT00390000006826	ENSGT00950000183184.a.a.b	ENSGT00390000017860.a.b.f	ENSGT00390000011204
Atherinomorphae	ANCESTRAL SPECIES	24	ENSGT00950000183028.a.a.a.g.b	ENSGT00940000161625.m	ENSGT00940000165423.a.b	ENSGT00610000086518.b.a	ENSGT00940000156089.e.a	ENSGT00500000044939	ENSGT00390000005159.j	ENSGT00940000156444.c	ENSGT00940000155861.C.e	ENSGT00940000164908	ENSGT00940000157360.c	ENSGT00940000156807.f	ENSGT00940000154657.A.d	ENSGT00950000183165.a.a.a	ENSGT00950000183038.a.b.b.b.r #21	ENSGT00390000001718.b #22	ENSGT00390000004923.C	ENSGT00940000162768.B.b	ENSGT00940000154360.A.b.b	ENSGT00940000155749.d	ENSGT00510000047334	ENSGT00550000074981	ENSGT00950000183140.a.a	ENSGT00940000168325	ENSGT00940000177931	ENSGT00940000155675.p.b	ENSGT00940000165235.a.a	ENSGT00390000006826	ENSGT00950000183184.a.a.b	ENSGT00390000017860.a.b.f	ENSGT00390000011204
Cyprinodontiformes	ANCESTRAL SPECIES	26	ENSGT00390000014376.c.b	ENSGT00950000183028.a.a.a.g.b	ENSGT00940000161625.m	ENSGT00940000165423.a.b	ENSGT00610000086518.b.a	ENSGT00940000156089.e.a	ENSGT00500000044939	ENSGT00390000005159.j	ENSGT00940000156444.c	ENSGT00940000155861.C.e	ENSGT00940000157360.c	ENSGT00940000156807.f	ENSGT00940000154657.A.d	ENSGT00950000183165.a.a.a	ENSGT00950000183038.a.b.b.b.r #21	ENSGT00390000001718.b #22	ENSGT00390000004923.C	ENSGT00940000162768.B.b	ENSGT00940000154360.A.b.b	ENSGT00940000155749.d	ENSGT00510000047334	ENSGT00550000074981	ENSGT00950000183140.a.a	ENSGT00940000168325	ENSGT00940000177931	ENSGT00940000155675.p.b	ENSGT00940000165235.a.a	ENSGT00390000006826	ENSGT00950000183184.a.a.b	ENSGT00390000017860.a.b.f	ENSGT00390000011204
Aplocheiloidei	ANCESTRAL SPECIES	204															ENSGT00950000183038.a.b.b.b.r #21	ENSGT00390000001718.b #22	ENSGT00390000004923.C	ENSGT00940000162768.B.b	ENSGT00940000154360.A.b.b	ENSGT00510000047334	ENSGT00550000074981	ENSGT00950000183140.a.a	ENSGT00940000155675.p.b	ENSGT00940000165235.a.a	ENSGT00390000006826	ENSGT00950000183184.a.a.b
Mangrove rivulus	MODERN SPECIES	734															NR4A2 (ENSKMAG00000008431) #21	gpd2 (ENSKMAG00000008330) #22	ENSKMAG00000008308	ENSKMAG00000008289	ENSKMAG00000008262
Turquoise killifish	MODERN SPECIES	1619	CU570987.1 (ENSNFUG00015005274)	ENSNFUG00015005128	PELI3 (ENSNFUG00015005089)	ENSNFUG00015005064	MED11 (ENSNFUG00015005054)	EIF4A1 (ENSNFUG00015004769)	senp3b (ENSNFUG00015013061)	ALOX12 (ENSNFUG00015012795)	RCE1A (ENSNFUG00015012764)	cd248a (ENSNFUG00015012749)	BX005022.1 (ENSNFUG00015012742)	ache (ENSNFUG00015012736)	znf16l (ENSNFUG00015012724)	ENSNFUG00015012691	NR4A2 (ENSNFUG00015012524) #21	gpd2 (ENSNFUG00015012357) #22	ENSNFUG00015012335	ENSNFUG00015012237	eed (ENSNFUG00015012208)	ENSNFUG00015012170	ENSNFUG00015011470	FAM171B (ENSNFUG00015011440)	MBD5 (ENSNFUG00015011296)	ACVR2A (ENSNFUG00015011205)	ENSNFUG00015011167	ENSNFUG00015011163	zeb2b (ENSNFUG00015011080)	ENSNFUG00015011047	ENSNFUG00015011037	AOX1 (ENSNFUG00015008831)	bzw1a (ENSNFUG00015008762)
Cyprinodontoidei	ANCESTRAL SPECIES	26	ENSGT00390000003758	ENSGT00940000163254	ENSGT01060000248575.D.c.b.a.a	ENSGT00530000063484.b.b.d.b	ENSGT00940000154342.C	ENSGT00940000156089.e.a	ENSGT00500000044939	ENSGT00390000005159.j	ENSGT00940000156444.c	ENSGT00940000155861.C.e	ENSGT00940000157360.c	ENSGT00940000156807.f	ENSGT00940000154657.A.d	ENSGT00950000183165.a.a.a	ENSGT00950000183038.a.b.b.b.r #21	ENSGT00390000001718.b #22	ENSGT00390000004923.C	ENSGT00940000162768.B.b	ENSGT00940000154360.A.b.b	ENSGT00940000155749.d	ENSGT00510000047334	ENSGT00550000074981	ENSGT00950000183140.a.a	ENSGT00940000168325	ENSGT00940000177931	ENSGT00940000155675.p.b	ENSGT00940000165235.a.a	ENSGT00390000006826	ENSGT00950000183184.a.a.b	ENSGT00390000017860.a.b.f	ENSGT00390000011204
Poeciliinae	ANCESTRAL SPECIES	23	ENSGT00390000003758	ENSGT00940000163254	ENSGT01060000248575.D.c.b.a.a	ENSGT00530000063484.b.b.d.b	ENSGT00940000154342.C	ENSGT00940000156089.e.a	ENSGT00500000044939	ENSGT00390000005159.j	ENSGT00940000156444.c	ENSGT00940000155861.C.e	ENSGT00940000157360.c	ENSGT00940000156807.f	ENSGT00940000154657.A.d	ENSGT00950000183165.a.a.a	ENSGT00950000183038.a.b.b.b.r #21	ENSGT00390000001718.b #22	ENSGT00390000004923.C	ENSGT00940000162768.B.b	ENSGT00940000154360.A.b.b	ENSGT00940000155749.d	ENSGT00510000047334	ENSGT00550000074981	ENSGT00950000183140.a.a	ENSGT00940000168325	ENSGT00940000165235.a.a	ENSGT00390000006826	ENSGT00950000183184.a.a.b	ENSGT00390000017860.a.b.f	ENSGT00390000011204	ENSGT00940000164385.a.a.a.b	ENSGT00390000017581.b.b
Poecilia	ANCESTRAL SPECIES	45	ENSGT00390000003758	ENSGT00940000163254	ENSGT01060000248575.D.c.b.a.a	ENSGT00530000063484.b.b.d.b	ENSGT00940000154342.C	ENSGT00940000156089.e.a	ENSGT00500000044939	ENSGT00390000005159.j	ENSGT00940000156444.c	ENSGT00940000155861.C.e	ENSGT00940000157360.c	ENSGT00940000156807.f	ENSGT00940000154657.A.d	ENSGT00950000183165.a.a.a	ENSGT00950000183038.a.b.b.b.r #21	ENSGT00390000001718.b #22	ENSGT00390000004923.C	ENSGT00940000162768.B.b	ENSGT00940000154360.A.b.b	ENSGT00940000155749.d	ENSGT00510000047334	ENSGT00550000074981	ENSGT00950000183140.a.a	ENSGT00940000155675.p.b	ENSGT00940000165235.a.a	ENSGT00390000006826	ENSGT00950000183184.a.a.b	ENSGT00390000017860.a.b.f	ENSGT00390000011204	ENSGT00940000164385.a.a.a.b	ENSGT00390000017581.b.b
NAME_6	ANCESTRAL SPECIES	358						ENSGT00940000156089.e.a	ENSGT00500000044939	ENSGT00390000005159.j	ENSGT00940000156444.c	ENSGT00940000155861.C.e	ENSGT00940000157360.c	ENSGT00940000156807.f	ENSGT00940000154657.A.d	ENSGT00950000183165.a.a.a	ENSGT00950000183038.a.b.b.b.r #21	ENSGT00390000001718.b #22
Amazon molly	MODERN SPECIES	474															ENSPFOG00000022265	gpd2 (ENSPFOG00000014961) #22	ENSPFOG00000014905	st7 (ENSPFOG00000014750)	wnt2 (ENSPFOG00000014710)	asz1 (ENSPFOG00000014640)	cftr (ENSPFOG00000014478)	ENSPFOG00000014424	ENSPFOG00000014390	ENSPFOG00000014334	BET1L (ENSPFOG00000014322)	deaf1 (ENSPFOG00000014257)	ENSPFOG00000013986	dldh (ENSPFOG00000013896)	SYT8 (ENSPFOG00000013827)	tnni2a.2 (ENSPFOG00000013772)	TNNI2 (ENSPFOG00000023624)
Sailfin molly	MODERN SPECIES	945					dmd (ENSPLAG00000015325)	abi2b (ENSPLAG00000000353)	cyp20a1 (ENSPLAG00000015380)	tmem237b (ENSPLAG00000000355)	MPP4 (ENSPLAG00000015413)	ALS2 (ENSPLAG00000015574)	inpp4ab (ENSPLAG00000015758)	SLC9A2 (ENSPLAG00000015885)	ENSPLAG00000015909	ENSPLAG00000015938	NR4A2 (ENSPLAG00000015941) #21	gpd2 (ENSPLAG00000016007) #22	ENSPLAG00000016026
Guppy	MODERN SPECIES	450	ENSPREG00000014193	ENSPREG00000014219	tmem47 (ENSPREG00000014234)	ENSPREG00000014332	dmd (ENSPREG00000014502)	abi2b (ENSPREG00000014947)	cyp20a1 (ENSPREG00000014976)	tmem237b (ENSPREG00000015009)	MPP4 (ENSPREG00000015049)	ALS2 (ENSPREG00000015098)	inpp4ab (ENSPREG00000015264)	ENSPREG00000015476	ENSPREG00000015607	ENSPREG00000015663	NR4A2 (ENSPREG00000015677) #21	gpd2 (ENSPREG00000015690) #22	ENSPREG00000015714	ENSPREG00000015736	LRRC3 (ENSPREG00000015757)	ATP7B (ENSPREG00000015767)	eed (ENSPREG00000015809)	pwp2h (ENSPREG00000015887)	ENSPREG00000015932	COL5A2 (ENSPREG00000015993)	ENSPREG00000016172	ENSPREG00000016193	zswim2 (ENSPREG00000016206)	FAM171B (ENSPREG00000016216)	ENSPREG00000016230	mrps9 (ENSPREG00000016254)	pou3f3b (ENSPREG00000016284)
Platyfish	MODERN SPECIES	16	nop58 (ENSXMAG00000013666)	ENSXMAG00000030066	ENSXMAG00000024325	ENSXMAG00000008406	tmem47 (ENSXMAG00000008404)	DMD (ENSXMAG00000008318)	abi2b (ENSXMAG00000008309)	cyp20a1 (ENSXMAG00000008300)	tmem237b (ENSXMAG00000008299)	MPP4 (ENSXMAG00000008285)	ALS2 (ENSXMAG00000008272)	inpp4ab (ENSXMAG00000008270)	ENSXMAG00000008207	TUBA4A (ENSXMAG00000026340)	NR4A2 (ENSXMAG00000008198) #21	gpd2 (ENSXMAG00000008190) #22	ENSXMAG00000029591	ENSXMAG00000008175	LRRC3 (ENSXMAG00000019730)	ATP7B (ENSXMAG00000008157)	eed (ENSXMAG00000008149)	pwp2h (ENSXMAG00000008124)	ENSXMAG00000008123	ENSXMAG00000007999	ENSXMAG00000007989	zswim2 (ENSXMAG00000024598)	ENSXMAG00000022497	ENSXMAG00000007979	mrps9 (ENSXMAG00000007974)	pou3f3b (ENSXMAG00000021922)	ENSXMAG00000022133
NAME_4	ANCESTRAL SPECIES	90			ENSGT00940000163254	ENSGT00530000063484.b.b.d.b	ENSGT00940000154342.C	ENSGT00940000156089.e.a	ENSGT00500000044939	ENSGT00390000005159.j	ENSGT00940000156444.c	ENSGT00940000155861.C.e	ENSGT00940000157360.c	ENSGT00940000156807.f	ENSGT00940000154657.A.d	ENSGT00950000183165.a.a.a	ENSGT00950000183038.a.b.b.b.r #21	ENSGT00390000001718.b #22	ENSGT00390000004923.C	ENSGT00940000162768.B.b	ENSGT00940000154360.A.b.b	ENSGT00940000155749.d	ENSGT00510000047334	ENSGT00550000074981	ENSGT00950000183140.a.a	ENSGT00940000168325	ENSGT00940000177931	ENSGT00940000155675.p.b	ENSGT00940000165235.a.a	ENSGT00390000006826	ENSGT00950000183184.a.a.b	ENSGT00390000017860.a.b.f	ENSGT00390000011204
Sheepshead minnow	MODERN SPECIES	265					abi2b (ENSCVAG00000015289)	cyp20a1 (ENSCVAG00000015170)	tmem237b (ENSCVAG00000015114)	ENSCVAG00000015075	MPP4 (ENSCVAG00000015060)	ENSCVAG00000014968	inpp4ab (ENSCVAG00000014936)	ENSCVAG00000014684	ENSCVAG00000014674	ENSCVAG00000014521	NR4A2 (ENSCVAG00000014515) #21	gpd2 (ENSCVAG00000014507) #22	ENSCVAG00000014489	ENSCVAG00000014482	LRRC3 (ENSCVAG00000014472)	ENSCVAG00000014466	ATP7B (ENSCVAG00000014446)	eed (ENSCVAG00000014409)	pwp2h (ENSCVAG00000000996)	ENSCVAG00000014333	ENSCVAG00000014163	ENSCVAG00000008212	zswim2 (ENSCVAG00000000212)	FAM171B (ENSCVAG00000007832)	ENSCVAG00000007816	mrps9 (ENSCVAG00000007791)	pou3f3b (ENSCVAG00000007726)
Mummichog	MODERN SPECIES	2385	gtf3c3 (ENSFHEG00000019622)	ENSFHEG00000019526	tmem47 (ENSFHEG00000019497)	ENSFHEG00000019459	dmd (ENSFHEG00000019360)	abi2b (ENSFHEG00000018481)	cyp20a1 (ENSFHEG00000018443)	tmem237b (ENSFHEG00000018428)	MPP4 (ENSFHEG00000018412)	ALS2 (ENSFHEG00000018208)	inpp4ab (ENSFHEG00000018010)	ENSFHEG00000017960	ENSFHEG00000017707	ENSFHEG00000016803	NR4A2 (ENSFHEG00000016790) #21	gpd2 (ENSFHEG00000016695) #22	ENSFHEG00000016665	ENSFHEG00000016615	LRRC3 (ENSFHEG00000000887)	ATP7B (ENSFHEG00000016584)	eed (ENSFHEG00000016575)
Oryzias	ANCESTRAL SPECIES	40	ENSGT00940000159602	ENSGT00690000103830	ENSGT00940000159255	ENSGT00390000000447	ENSGT00610000086518.b.a.e	ENSGT00940000156089.e.a	ENSGT00500000044939	ENSGT00390000005159.j	ENSGT00940000156444.c	ENSGT00940000155861.C.e	ENSGT00940000164908	ENSGT00940000157360.c	ENSGT00940000154657.A.d	ENSGT00950000183165.a.a.a	ENSGT00950000183038.a.b.b.b.r #21	ENSGT00390000001718.b #22	ENSGT00390000004923.C	ENSGT00940000162768.B.b	ENSGT00940000154360.A.b.b	ENSGT00940000155749.d	ENSGT00510000047334	ENSGT00550000074981	ENSGT00950000183140.a.a	ENSGT00940000155675.p.b	ENSGT00940000165235.a.a	ENSGT00390000006826	ENSGT00950000183184.a.a.b	ENSGT00950000183208.A.c.a	ENSGT01040000240400.c.a.b.b	ENSGT00940000157233.c	ENSGT00390000016542
Oryzias_b	ANCESTRAL SPECIES	50	ENSGT00940000159870	ENSGT00940000159602	ENSGT00940000159255	ENSGT00390000000447	ENSGT00610000086518.b.a.e.b.b	ENSGT00940000156089.e.a	ENSGT00500000044939	ENSGT00390000005159.j	ENSGT00940000156444.c	ENSGT00940000155861.C.e	ENSGT00940000164908	ENSGT00940000157360.c	ENSGT00940000154657.A.d	ENSGT00950000183165.a.a.a	ENSGT00950000183038.a.b.b.b.r #21	ENSGT00390000001718.b #22	ENSGT00390000004923.C	ENSGT00940000162768.B.b	ENSGT00940000154360.A.b.b	ENSGT00940000155749.d	ENSGT00510000047334	ENSGT00550000074981	ENSGT00950000183140.a.a	ENSGT00940000155675.p.b	ENSGT00940000165235.a.a	ENSGT00390000006826	ENSGT00950000183184.a.a.b	ENSGT00950000183208.A.c.a	ENSGT01040000240400.c.a.b.b	ENSGT00940000157233.c	ENSGT00390000016542
Javanese ricefish	MODERN SPECIES	11	ENSOJAG00000019860	abi2b (ENSOJAG00000019884)	tmem237b (ENSOJAG00000020131)	MPP4 (ENSOJAG00000020155)	ALS2 (ENSOJAG00000020343)	ENSOJAG00000020803	ENSOJAG00000020823	ENSOJAG00000020853	ENSOJAG00000020858	ENSOJAG00000020865	zgc:113142 (ENSOJAG00000020888)	inpp4ab (ENSOJAG00000020924)	ENSOJAG00000021491	ENSOJAG00000021533	TUBA4A (ENSOJAG00000021745)	gpd2 (ENSOJAG00000021848) #22	ENSOJAG00000022286	ENSOJAG00000022299	LRRC3 (ENSOJAG00000022345)	ATP7B (ENSOJAG00000022389)	eed (ENSOJAG00000022814)	ENSOJAG00000022951	ENSOJAG00000022978	ENSOJAG00000022984	ENSOJAG00000000067	ENSOJAG00000000086	zeb2b (ENSOJAG00000000338)	ENSOJAG00000000414	ENSOJAG00000000428	ACVR2A (ENSOJAG00000000471)	orc4 (ENSOJAG00000000527)
Indian medaka	MODERN SPECIES	20													ENSOMEG00000020950	TUBA4A (ENSOMEG00000020878)	NR4A2 (ENSOMEG00000020865) #21	gpd2 (ENSOMEG00000020845) #22	ENSOMEG00000020831	ENSOMEG00000020811	LRRC3 (ENSOMEG00000020765)	ENSOMEG00000020760	ENSOMEG00000020746	eed (ENSOMEG00000020708)	pwp2h (ENSOMEG00000020671)	ENSOMEG00000020623	ENSOMEG00000020601	ENSOMEG00000020589	ENSOMEG00000020567	FAM171B (ENSOMEG00000020541)	zeb2b (ENSOMEG00000020511)	ENSOMEG00000020453	ENSOMEG00000020445
Oryzias_a	ANCESTRAL SPECIES	56	ENSGT00940000159870	ENSGT00940000159602	ENSGT00690000103830	ENSGT00940000159255	ENSGT00390000000447	ENSGT00940000156089.e.a	ENSGT00500000044939	ENSGT00390000005159.j	ENSGT00940000156444.c	ENSGT00940000155861.C.e	ENSGT00940000164908	ENSGT00940000157360.c	ENSGT00940000154657.A.d	ENSGT00950000183165.a.a.a	ENSGT00950000183038.a.b.b.b.r #21	ENSGT00390000001718.b #22	ENSGT00390000004923.C	ENSGT00940000162768.B.b	ENSGT00940000154360.A.b.b	ENSGT00940000155749.d	ENSGT00510000047334	ENSGT00550000074981	ENSGT00950000183140.a.a	ENSGT00940000165235.a.a	ENSGT00950000183184.a.a.b	ENSGT00950000183208.A.c.a	ENSGT01100000264591	ENSGT01040000240400.c.a.b.b	ENSGT00940000157233.c	ENSGT00390000016542	ENSGT00530000064137.a.b
Japanese Medaka HdrR	MODERN SPECIES	11	abi2b (ENSORLG00000000002)	cyp20a1 (ENSORLG00000000005)	tmem237b (ENSORLG00000000008)	MPP4 (ENSORLG00000000012)	ALS2 (ENSORLG00000000024)	zgc:113142 (ENSORLG00000000026)	inpp4ab (ENSORLG00000000030)	ENSORLG00000022036	ENSORLG00000022471	ENSORLG00000026826	ENSORLG00000000211	ENSORLG00000027764	ENSORLG00000000040	ENSORLG00000000046	ENSORLG00000000050 #21	gpd2 (ENSORLG00000000052) #22	ENSORLG00000027750	ENSORLG00000000059	LRRC3 (ENSORLG00000000061)	ENSORLG00000000063	eed (ENSORLG00000030215)	pwp2h (ENSORLG00000000066)	ENSORLG00000000068	ENSORLG00000029677	ENSORLG00000000079	ENSORLG00000023624	ENSORLG00000000091	ENSORLG00000000095	zeb2b (ENSORLG00000000098)	ENSORLG00000024724	ENSORLG00000027108
Chinese medaka	MODERN SPECIES	357													ENSOSIG00000023741	TUBA4A (ENSOSIG00000023736)	NR4A2 (ENSOSIG00000023733) #21	gpd2 (ENSOSIG00000023732) #22	ENSOSIG00000023727	LRRC3 (ENSOSIG00000023721)	ATP7B (ENSOSIG00000023702)	eed (ENSOSIG00000023692)	pwp2h (ENSOSIG00000023690)	ENSOSIG00000023688	ENSOSIG00000023682	ENSOSIG00000023680
Ovalentaria_B	ANCESTRAL SPECIES	22	ENSGT00940000165423.a.b	ENSGT00610000086518.b.a	ENSGT00940000156089.e.a	ENSGT00940000176171	ENSGT00500000044939	ENSGT00390000005159.j	ENSGT00940000156444.c	ENSGT00940000155861.C.e	ENSGT00940000158299.b	ENSGT00940000164908	ENSGT00940000157360.c	ENSGT00940000156807.f	ENSGT00940000154657.A.d	ENSGT00950000183165.a.a.a	ENSGT00950000183038.a.b.b.b.r #21	ENSGT00390000001718.b #22	ENSGT00390000004923.C	ENSGT00940000162768.B.b	ENSGT00940000154360.A.b.b	ENSGT00940000155749.d	ENSGT00510000047334	ENSGT00550000074981	ENSGT00950000183140.a.a	ENSGT00940000177931	ENSGT00940000155675.p.b	ENSGT00940000168325	ENSGT00940000165235.a.a	ENSGT00390000006826	ENSGT00950000183184.a.a.b	ENSGT00390000017860.a.b.f	ENSGT00390000011204
Pomacentridae	ANCESTRAL SPECIES	181				ENSGT00940000156089.e.a	ENSGT00500000044939	ENSGT00390000005159.j	ENSGT00940000156444.c	ENSGT00940000155861.C.e	ENSGT00940000158299.b	ENSGT00940000164908	ENSGT00940000157360.c	ENSGT00940000156807.f	ENSGT00940000154657.A.d	ENSGT00950000183165.a.a.a	ENSGT00950000183038.a.b.b.b.r #21	ENSGT00390000001718.b #22	ENSGT01090000260059.a.b.b.b.a.d.a.a.b.a.a
Pomacentridae_A	ANCESTRAL SPECIES	139	ENSGT00940000161625.m	ENSGT00610000086518.b.a	ENSGT00940000165423.a.b	ENSGT00940000157360.c	ENSGT00940000164908	ENSGT00940000158299.b	ENSGT00940000155861.C.e	ENSGT00940000156444.c	ENSGT00390000005159.j	ENSGT00500000044939	ENSGT00940000156089.e.a	ENSGT00940000156807.f	ENSGT00940000154657.A.d	ENSGT00950000183165.a.a.a	ENSGT00950000183038.a.b.b.b.r #21	ENSGT00390000001718.b #22	ENSGT01090000260059.a.b.b.b.a.d.a.a.b.a.a
Amphiprion	ANCESTRAL SPECIES	166	ENSGT00940000161625.m	ENSGT00610000086518.b.a	ENSGT00940000165423.a.b	ENSGT00940000157360.c	ENSGT00940000164908	ENSGT00940000158299.b	ENSGT00940000155861.C.e	ENSGT00940000156444.c	ENSGT00390000005159.j	ENSGT00500000044939	ENSGT00940000156089.e.a	ENSGT00940000156807.f	ENSGT00940000154657.A.d	ENSGT00950000183165.a.a.a	ENSGT00950000183038.a.b.b.b.r #21	ENSGT00390000001718.b #22	ENSGT01090000260059.a.b.b.b.a.d.a.a.b.a.a.c
Clown anemonefish	MODERN SPECIES	2105													ENSAOCG00000008784	ENSAOCG00000008641	NR4A2 (ENSAOCG00000008623) #21	gpd2 (ENSAOCG00000008478) #22	ENSAOCG00000008411
Orange clownfish	MODERN SPECIES	16	ENSAPEG00000019745	ENSAPEG00000019608	ENSAPEG00000019552	inpp4ab (ENSAPEG00000019412)	zgc:113142 (ENSAPEG00000019392)	CHRNA2 (ENSAPEG00000019366)	ALS2 (ENSAPEG00000019244)	MPP4 (ENSAPEG00000019214)	tmem237b (ENSAPEG00000019186)	cyp20a1 (ENSAPEG00000019128)	abi2b (ENSAPEG00000019077)	ENSAPEG00000018929	ENSAPEG00000018852	ENSAPEG00000018821	NR4A2 (ENSAPEG00000018813) #21	gpd2 (ENSAPEG00000018763) #22	ENSAPEG00000018749	ENSAPEG00000018668 ##24	ENSAPEG00000018582	CACNB4 (ENSAPEG00000018520) #13	SEMA5B (ENSAPEG00000018473)	kpnb3 (ENSAPEG00000018395)	atg13 (ENSAPEG00000018265)	ENSAPEG00000018227	creb3l1 (ENSAPEG00000018166)	zgc:110699 (ENSAPEG00000018136)	ndufs1 (ENSAPEG00000018082)	unc50 (ENSAPEG00000018044)	ENSAPEG00000018019	ENSAPEG00000017980	COL8A1 (ENSAPEG00000017967)
Spiny chromis	MODERN SPECIES	468	ENSAPOG00000004475	inpp4ab (ENSAPOG00000004305)	ENSAPOG00000004164	zgc:113142 (ENSAPOG00000004136)	ENSAPOG00000004130	ALS2 (ENSAPOG00000004100)	ENSAPOG00000003957	MPP4 (ENSAPOG00000003932)	tmem237b (ENSAPOG00000003914)	cyp20a1 (ENSAPOG00000003904)	abi2b (ENSAPOG00000003870)	ENSAPOG00000003825	ENSAPOG00000003654	ENSAPOG00000003626	NR4A2 (ENSAPOG00000003608) #21	gpd2 (ENSAPOG00000003586) #22
Bicolor damselfish	MODERN SPECIES	648			ENSSPAG00000006685	abi2b (ENSSPAG00000006656)	cyp20a1 (ENSSPAG00000006624)	tmem237b (ENSSPAG00000006600)	MPP4 (ENSSPAG00000006093)	ALS2 (ENSSPAG00000005992)	chrna2a (ENSSPAG00000005948)	zgc:113142 (ENSSPAG00000005940)	inpp4ab (ENSSPAG00000005901)	ENSSPAG00000005827	ENSSPAG00000005518	TUBA4A (ENSSPAG00000005459)	NR4A2 (ENSSPAG00000005393) #21	gpd2 (ENSSPAG00000005357) #22	ENSSPAG00000005346
Cichlidae	ANCESTRAL SPECIES	27	ENSGT00940000154319	ENSGT00940000156884	ENSGT00950000182905.a.a.a.a.a.b	ENSGT00390000016940.c.b.b	ENSGT00940000155522.g.b	ENSGT00390000003164	ENSGT00940000154095.b.b.a.a	ENSGT00950000183165.b.a.e.b.d.b	ENSGT00950000183165.b.a.e.a	ENSGT00950000182882.A.b.b.f	ENSGT00940000164444.b	ENSGT00390000009940	ENSGT00940000154657.A.d	ENSGT00950000183165.a.a.a	ENSGT00950000183038.a.b.b.b.r #21	ENSGT00390000001718.b #22	ENSGT00390000004923.C	ENSGT00940000162768.B.b	ENSGT00940000154360.A.b.b	ENSGT00940000155749.d	ENSGT00510000047334	ENSGT00550000074981	ENSGT00950000183140.a.a	ENSGT00940000177931	ENSGT00940000155675.p.b	ENSGT00940000168325	ENSGT00940000165235.a.a	ENSGT00940000157360.c	ENSGT00950000183184.a.a.b	ENSGT00390000017860.a.b.f	ENSGT00390000011204
Pseudocrenilabrinae	ANCESTRAL SPECIES	10	ENSGT00940000154319	ENSGT00940000156884	ENSGT00950000182905.a.a.a.a.a.b	ENSGT00390000016940.c.b.b	ENSGT00940000155522.g.b	ENSGT00390000003164	ENSGT00940000154095.b.b.a.a	ENSGT00950000183165.b.a.e.b.d.b	ENSGT00950000183165.b.a.e.a	ENSGT00950000182882.A.b.b.f	ENSGT00940000164444.b	ENSGT00390000009940	ENSGT00940000154657.A.d	ENSGT00950000183165.a.a.a	ENSGT00950000183038.a.b.b.b.r #21	ENSGT00390000001718.b #22	ENSGT00390000004923.C	ENSGT00940000162768.B.b	ENSGT00940000154360.A.b.b	ENSGT00940000155749.d	ENSGT00510000047334	ENSGT00550000074981	ENSGT00950000183140.a.a	ENSGT00940000168325	ENSGT00940000177931	ENSGT00940000155675.p.b	ENSGT00940000165235.a.a	ENSGT00940000157360.c	ENSGT00950000183184.a.a.b	ENSGT00390000017860.a.b.f	ENSGT00390000011204
Nile tilapia	MODERN SPECIES	14	MAP3K2 (ENSONIG00000012187)	ENSONIG00000012184	ENSONIG00000042479	ENSONIG00000041525	tmem198b (ENSONIG00000012183)	desmb (ENSONIG00000012177)	dnpep (ENSONIG00000012175)	si:ch211-114n24.6 (ENSONIG00000037168)	LECT2 (ENSONIG00000036359)	bin1b (ENSONIG00000012159)	ihhb (ENSONIG00000033552)	nhej1 (ENSONIG00000012157)	ENSONIG00000012140	ENSONIG00000038870	NR4A2 (ENSONIG00000012131) #21	gpd2 (ENSONIG00000012127) #22	ENSONIG00000041348	ENSONIG00000012122	LRRC3 (ENSONIG00000021036)	ATP7B (ENSONIG00000012121)	eed (ENSONIG00000007134)	pwp2h (ENSONIG00000007136)	ENSONIG00000007140	ENSONIG00000007142	ENSONIG00000007178	inpp4ab (ENSONIG00000007183)	ENSONIG00000013460	SLAIN1 (ENSONIG00000013458)	mrps9 (ENSONIG00000013457)	pou3f3b (ENSONIG00000033851)	ENSONIG00000040824
Pseudocrenilabrinae_A	ANCESTRAL SPECIES	16	ENSGT00940000156884	ENSGT00950000182905.a.a.a.a.a.b	ENSGT00390000016940.c.b.b	ENSGT00940000155522.g.b	ENSGT00390000003164	ENSGT00940000154095.b.b.a.a	ENSGT00950000183165.b.a.e.b.d.b	ENSGT00950000183165.b.a.e.a	ENSGT00390000015484.i.f	ENSGT00950000182882.A.b.b.f	ENSGT00940000164444.b	ENSGT00390000009940	ENSGT00940000154657.A.d	ENSGT00950000183165.a.a.a	ENSGT00950000183038.a.b.b.b.r #21	ENSGT00390000001718.b #22	ENSGT00390000004923.C	ENSGT00940000162768.B.b	ENSGT00940000154360.A.b.b	ENSGT00940000155749.d	ENSGT00510000047334	ENSGT00550000074981	ENSGT00950000183140.a.a	ENSGT00940000168325	ENSGT00940000177931	ENSGT00940000155675.p.b	ENSGT00940000165235.a.a	ENSGT00940000157360.c	ENSGT00950000183184.a.a.b	ENSGT00390000017860.a.b.f	ENSGT00390000011204
Haplochromini	ANCESTRAL SPECIES	38	ENSGT00950000182905.a.a.a.a.a.b	ENSGT00390000016940.c.b.b	ENSGT00940000155522.g.b	ENSGT00390000003164	ENSGT00940000154095.b.b.a.a	ENSGT00950000183165.b.a.e.b.d.b	ENSGT00950000183165.b.a.e.b.e	ENSGT00950000183165.b.a.e.a	ENSGT00390000015484.i.f	ENSGT00950000182882.A.b.b.f	ENSGT00940000164444.b	ENSGT00390000009940	ENSGT00940000154657.A.d	ENSGT00950000183165.a.a.a	ENSGT00950000183038.a.b.b.b.r #21	ENSGT00390000001718.b #22	ENSGT00390000004923.C	ENSGT00940000162768.B.b	ENSGT00940000154360.A.b.b
Haplochromini_A	ANCESTRAL SPECIES	42	ENSGT00940000156884	ENSGT00950000182905.a.a.a.a.a.b	ENSGT00390000016940.c.b.b	ENSGT00940000155522.g.b	ENSGT00390000003164	ENSGT00940000154095.b.b.a.a	ENSGT00950000183165.b.a.e.b.d.b	ENSGT00950000183165.b.a.e.a	ENSGT00390000015484.i.f	ENSGT00950000182882.A.b.b.f	ENSGT00940000164444.b	ENSGT00390000009940	ENSGT00940000154657.A.d	ENSGT00950000183165.a.a.a	ENSGT00950000183038.a.b.b.b.r #21	ENSGT00390000001718.b #22	ENSGT00390000004923.C	ENSGT00940000162768.B.b	ENSGT00940000154360.A.b.b
Haplochromini_B	ANCESTRAL SPECIES	48	ENSGT00940000156884	ENSGT00950000182905.a.a.a.a.a.b	ENSGT00390000016940.c.b.b	ENSGT00940000155522.g.b	ENSGT00390000003164	ENSGT00940000154095.b.b.a.a	ENSGT00950000183165.b.a.e.a	ENSGT00390000015484.i.f	ENSGT00950000182882.A.b.b.f	ENSGT00940000164444.b	ENSGT00390000009940	ENSGT00940000177722.d.b	ENSGT00940000154657.A.d	ENSGT00950000183165.a.a.a	ENSGT00950000183038.a.b.b.b.r #21	ENSGT00390000001718.b #22	ENSGT00390000004923.C	ENSGT00940000162768.B.b	ENSGT00940000154360.A.b.b
Zebra mbuna	MODERN SPECIES	1105	ENSMZEG00005015788	bzw1a (ENSMZEG00005015758)	AOX1 (ENSMZEG00005015711)	ENSMZEG00005015698	sh3bp4a (ENSMZEG00005015690)	s100b (ENSMZEG00005015684)	ENSMZEG00005015678	ENSMZEG00005015665	ENSMZEG00005015646	ahr1b (ENSMZEG00005015628)	ENSMZEG00005015623	mfsd6a (ENSMZEG00005015608)	ENSMZEG00005015580	ENSMZEG00005015539	nr4a2b (ENSMZEG00005015529) #21	gpd2 (ENSMZEG00005015505) #22	ENSMZEG00005015497	eed (ENSMZEG00005015490)	pwp2h (ENSMZEG00005015448)	ENSMZEG00005015426	ENSMZEG00005015382	ENSMZEG00005015345	inpp4ab (ENSMZEG00005015313)	ENSMZEG00005015297	SLAIN1 (ENSMZEG00005015282)	mrps9 (ENSMZEG00005015264)	pou3f3b (ENSMZEG00005015253)	ENSMZEG00005015241	ENSMZEG00005015233	ACTR3 (ENSMZEG00005015223)	LYPD1 (ENSMZEG00005015213)
Eastern happy	MODERN SPECIES	14	desmb (ENSACLG00000012754)	dnpep (ENSACLG00000012650)	ENSACLG00000012608	PTPRN (ENSACLG00000012492)	si:ch211-114n24.6 (ENSACLG00000012386)	si:ch211-114n24.6 (ENSACLG00000012376)	LECT2 (ENSACLG00000012363)	bin1b (ENSACLG00000012323)	ihhb (ENSACLG00000012286)	nhej1 (ENSACLG00000012268)	ENSACLG00000012261	ENSACLG00000012253	ENSACLG00000012185	ENSACLG00000012140	nr4a2b (ENSACLG00000011957) #21	gpd2 (ENSACLG00000011889) #22	ENSACLG00000011875	ENSACLG00000011842	ENSACLG00000011835	LRRC3 (ENSACLG00000011634)	ENSACLG00000011611	ENSACLG00000011599	zgc:172131 (ENSACLG00000011585)	ENSACLG00000011578	ENSACLG00000011572	ENSACLG00000011549	ENSACLG00000011541	ENSACLG00000011525	ATP7B (ENSACLG00000011489)	eed (ENSACLG00000011473)	pwp2h (ENSACLG00000011425)
P. nyererei	MODERN SPECIES	677													ENSPNYG00000012589	ENSPNYG00000012570	nr4a2b (ENSPNYG00000012470) #21	gpd2 (ENSPNYG00000012386) #22	ENSPNYG00000012360	ENSPNYG00000012326	ATP7B (ENSPNYG00000012269)
Burton s mouthbrooder	MODERN SPECIES	302	desmb (ENSHBUG00000010110)	dnpep (ENSHBUG00000010154)	PTPRN (ENSHBUG00000010169)	ENSHBUG00000010216	si:ch211-114n24.6 (ENSHBUG00000010228)	ENSHBUG00000010378	bin1b (ENSHBUG00000010419)	ihhb (ENSHBUG00000010450)	nhej1 (ENSHBUG00000010468)	ENSHBUG00000010480	ENSHBUG00000010517	ENSHBUG00000010533	nr4a2b (ENSHBUG00000010540) #21	ENSHBUG00000010553 ##21	ENSHBUG00000010569	gpd2 (ENSHBUG00000010611) #22	ENSHBUG00000010659	ENSHBUG00000010697	LRRC3 (ENSHBUG00000000286)	ENSHBUG00000010724
Lyretail cichlid	MODERN SPECIES	315	sumo1 (ENSNBRG00000015621)	MAP3K2 (ENSNBRG00000015642)	ENSNBRG00000015684	tmem198b (ENSNBRG00000015693)	desmb (ENSNBRG00000015713)	dnpep (ENSNBRG00000015753)	PTPRN (ENSNBRG00000015952)	ENSNBRG00000016002	si:ch211-114n24.6 (ENSNBRG00000016028)	bin1b (ENSNBRG00000016065)	ihhb (ENSNBRG00000016088)	nhej1 (ENSNBRG00000016100)	ENSNBRG00000016116	ENSNBRG00000016160	nr4a2b (ENSNBRG00000016182) #21	gpd2 (ENSNBRG00000016315) #22	ENSNBRG00000016366	ENSNBRG00000016409	ATP7B (ENSNBRG00000016446)	eed (ENSNBRG00000016506)	pwp2h (ENSNBRG00000016527)	ENSNBRG00000016629	ENSNBRG00000016650	ENSNBRG00000016673	ENSNBRG00000016687	INPP4A (ENSNBRG00000016726)	ENSNBRG00000016769	SLAIN1 (ENSNBRG00000016815)	mrps9 (ENSNBRG00000016845)	pou3f3b (ENSNBRG00000016867)	ENSNBRG00000016892
Midas cichlid	MODERN SPECIES	977					desmb (ENSACIG00000009628)	dnpep (ENSACIG00000010154)	PTPRN (ENSACIG00000010188)	tuba8l4 (ENSACIG00000010226)	si:ch211-114n24.6 (ENSACIG00000010272)	bin1b (ENSACIG00000010390)	ihhb (ENSACIG00000010415)	nhej1 (ENSACIG00000010423)	ENSACIG00000010455	ENSACIG00000010687	NR4A2 (ENSACIG00000010705) #21	gpd2 (ENSACIG00000010841) #22	ENSACIG00000010876	ENSACIG00000010897	ENSACIG00000010933	LRRC3 (ENSACIG00000011335)	ENSACIG00000011345
Percomorphaceae_C	ANCESTRAL SPECIES	23	ENSGT01100000263513.a.b	ENSGT00940000165423.a.b	ENSGT00610000086518.b.a	ENSGT00940000156089.e.a	ENSGT00500000044939	ENSGT00390000005159.j	ENSGT00940000156444.c	ENSGT00940000155861.C.e	ENSGT00940000158299.b	ENSGT00940000164908	ENSGT00940000157360.c	ENSGT00940000156807.f	ENSGT00940000154657.A.d	ENSGT00950000183165.a.a.a	ENSGT00950000183038.a.b.b.b.r #21	ENSGT00390000001718.b #22	ENSGT00390000004923.C	ENSGT00940000162768.B.b	ENSGT00940000154360.A.b.b	ENSGT00940000155749.d	ENSGT00510000047334	ENSGT00550000074981	ENSGT00950000183140.a.a	ENSGT00940000155675.p.b	ENSGT00940000177931	ENSGT00940000168325	ENSGT00940000165235.a.a	ENSGT00390000006826	ENSGT00950000183184.a.a.b	ENSGT00390000017860.a.b.f	ENSGT00390000011204
Percomorphaceae_D	ANCESTRAL SPECIES	23	ENSGT01100000263513.a.b	ENSGT00940000165423.a.b	ENSGT00610000086518.b.a	ENSGT00940000156089.e.a	ENSGT00500000044939	ENSGT00390000005159.j	ENSGT00940000156444.c	ENSGT00940000155861.C.e	ENSGT00940000158299.b	ENSGT00940000164908	ENSGT00940000157360.c	ENSGT00940000156807.f	ENSGT00940000154657.A.d	ENSGT00950000183165.a.a.a	ENSGT00950000183038.a.b.b.b.r #21	ENSGT00390000001718.b #22	ENSGT00390000004923.C	ENSGT00940000162768.B.b	ENSGT00940000154360.A.b.b	ENSGT00940000155749.d	ENSGT00510000047334	ENSGT00550000074981	ENSGT00950000183140.a.a	ENSGT00940000168325	ENSGT00940000165235.a.a	ENSGT00390000006826	ENSGT00950000183184.a.a.b	ENSGT00390000017860.a.b.f	ENSGT00390000011204	ENSGT00940000164385.a.a.a.b	ENSGT00390000017581.b.b
Anabantaria	ANCESTRAL SPECIES	32	ENSGT00940000161625.m	ENSGT01100000263513.a.b	ENSGT00940000165423.a.b	ENSGT00610000086518.b.a	ENSGT00940000156089.e.a	ENSGT00500000044939	ENSGT00390000005159.j	ENSGT00940000156444.c	ENSGT00940000155861.C.e	ENSGT00940000158299.b	ENSGT00940000164908	ENSGT00940000157360.c	ENSGT00940000154657.A.d	ENSGT00950000183165.a.a.a	ENSGT00950000183038.a.b.b.b.r #21	ENSGT00390000001718.b #22	ENSGT00390000004923.C	ENSGT00940000162768.B.b	ENSGT00940000154360.A.b.b	ENSGT00940000155749.d	ENSGT00510000047334	ENSGT00550000074981	ENSGT00950000183140.a.a	ENSGT00940000155675.p.b	ENSGT00940000165235.a.a	ENSGT00390000006826	ENSGT00950000183184.a.a.b	ENSGT00390000017860.a.b.f	ENSGT00390000011204	ENSGT00940000164385.a.a.a.b	ENSGT00390000017581.b.b
Anabantoidei	ANCESTRAL SPECIES	28	ENSGT00940000161625.m	ENSGT01100000263513.a.b	ENSGT00940000165423.a.b	ENSGT00610000086518.b.a	ENSGT00940000156089.e.a	ENSGT00500000044939	ENSGT00390000005159.j	ENSGT00940000156444.c	ENSGT00940000155861.C.e	ENSGT00940000158299.b	ENSGT00940000164908	ENSGT00940000157360.c	ENSGT00940000154657.A.d	ENSGT00950000183165.a.a.a	ENSGT00950000183038.a.b.b.b.r #21	ENSGT00390000001718.b #22	ENSGT00940000158398	ENSGT00390000003114.e.b.a	ENSGT00530000063607.b.j.b	ENSGT00390000002215.i.b	ENSGT00940000155065.xb.b	ENSGT00390000017581.b.b	ENSGT00940000164385.a.a.a.b	ENSGT00390000011204	ENSGT00390000017860.a.b.f	ENSGT00950000183184.a.a.b	ENSGT00390000006826	ENSGT00940000165235.a.a	ENSGT00940000155675.p.b	ENSGT00950000183140.a.a	ENSGT00550000074981
Climbing perch	MODERN SPECIES	11	ENSATEG00000013651	ENSATEG00000013736	ENSATEG00000013793	ENSATEG00000026816	abi2b (ENSATEG00000013899)	cyp20a1 (ENSATEG00000013941)	tmem237b (ENSATEG00000013987)	ENSATEG00000014005	ALS2 (ENSATEG00000014072)	ENSATEG00000014233	ENSATEG00000014443	ENSATEG00000014519	ENSATEG00000014628	ENSATEG00000026630	ENSATEG00000014678 #21	ENSATEG00000014800 #22	ENSATEG00000014880	ENSATEG00000014967	ENSATEG00000015005	ENSATEG00000015044	ENSATEG00000015062	ENSATEG00000015108	ENSATEG00000015179	mrps9 (ENSATEG00000015199)	ENSATEG00000015213	FAM171B (ENSATEG00000015221)	ENSATEG00000015273	ENSATEG00000015305	ENSATEG00000026059	ENSATEG00000015465	ENSATEG00000015493
Siamese fighting fish	MODERN SPECIES	10	dusp27 (ENSBSLG00000005882)	ENSBSLG00000005872	cybb (ENSBSLG00000005268)	ENSBSLG00000005163	abi2b (ENSBSLG00000004856)	cyp20a1 (ENSBSLG00000004024)	tmem237b (ENSBSLG00000003916)	MPP4 (ENSBSLG00000003898)	ALS2 (ENSBSLG00000003776)	CHRNA2 (ENSBSLG00000003586)	zgc:113142 (ENSBSLG00000003212)	inpp4ab (ENSBSLG00000003185)	ENSBSLG00000002627	ENSBSLG00000001877	NR4A2 (ENSBSLG00000001870) #21	gpd2 (ENSBSLG00000001802) #22	OSBPL11 (ENSBSLG00000001729)	gpd1c (ENSBSLG00000001710)	NCKAP5 (ENSBSLG00000001671)	LYPD1 (ENSBSLG00000001663)	actr3 (ENSBSLG00000001636)	pou3f3b (ENSBSLG00000001618)	mrps9 (ENSBSLG00000001466)	ENSBSLG00000001411	FAM171B (ENSBSLG00000001401)	ENSBSLG00000001392	ENSBSLG00000001375	ENSBSLG00000001320	ENSBSLG00000001294	pwp2h (ENSBSLG00000001247)	eed (ENSBSLG00000000888)
Zig-zag eel	MODERN SPECIES	11	ENSMAMG00000022416	ENSMAMG00000022423	ENSMAMG00000022411	ALS2 (ENSMAMG00000022402)	ENSMAMG00000022400	tmem237b (ENSMAMG00000022398)	cyp20a1 (ENSMAMG00000022396)	abi2b (ENSMAMG00000022395)	ENSMAMG00000022394	ENSMAMG00000022391	ENSMAMG00000022393	ENSMAMG00000022390	si:dkey-276j7.1 (ENSMAMG00000022388)	ENSMAMG00000022369	ENSMAMG00000022343 #21	ENSMAMG00000022341 #22	ENSMAMG00000022340	ENSMAMG00000027293	ENSMAMG00000022338	ENSMAMG00000022336	ENSMAMG00000022335	ENSMAMG00000022334	ENSMAMG00000022327	ENSMAMG00000022325	ENSMAMG00000022323	ENSMAMG00000022320	ENSMAMG00000022315	ENSMAMG00000022309	ENSMAMG00000022306	ENSMAMG00000022304	ENSMAMG00000022299
Carangaria	ANCESTRAL SPECIES	23	ENSGT01100000263513.a.b	ENSGT00940000165423.a.b	ENSGT00610000086518.b.a	ENSGT00940000156089.e.a	ENSGT00500000044939	ENSGT00390000005159.j	ENSGT00940000156444.c	ENSGT00940000155861.C.e	ENSGT00940000158299.b	ENSGT00940000164908	ENSGT00940000157360.c	ENSGT00940000156807.f	ENSGT00940000154657.A.d	ENSGT00950000183165.a.a.a	ENSGT00950000183038.a.b.b.b.r #21	ENSGT00390000001718.b #22	ENSGT00390000004923.C	ENSGT00940000162768.B.b	ENSGT00940000154360.A.b.b	ENSGT00940000155749.d	ENSGT00510000047334	ENSGT00550000074981	ENSGT00950000183140.a.a	ENSGT00940000168325.d	ENSGT00940000165235.a.a	ENSGT00390000006826	ENSGT00950000183184.a.a.b	ENSGT00390000017860.a.b.f	ENSGT00390000011204	ENSGT00940000164385.a.a.a.b	ENSGT00390000017581.b.b
Pleuronectoidei	ANCESTRAL SPECIES	47	ENSGT00940000155773.a ##31	ENSGT00390000014376.c.b	ENSGT00950000183028.a.a.a.g.b	ENSGT00940000161625.m	ENSGT01100000263513.a.b	ENSGT00940000165423.a.b	ENSGT00940000156089.e.a	ENSGT00500000044939	ENSGT00390000005159.j	ENSGT00940000156444.c	ENSGT00940000155861.C.e	ENSGT00940000156807.f	ENSGT00940000154657.A.d	ENSGT00950000183165.a.a.a	ENSGT00950000183038.a.b.b.b.r #21	ENSGT00390000001718.b #22	ENSGT00390000004923.C	ENSGT00940000162768.B.b	ENSGT00940000154360.A.b.b	ENSGT00940000155749.d	ENSGT00510000047334	ENSGT00550000074981	ENSGT00950000183140.a.a	ENSGT00940000168325.d	ENSGT00940000165235.a.a	ENSGT00390000006826	ENSGT00950000183184.a.a.b	ENSGT00390000017860.a.b.f	ENSGT00390000011204	ENSGT00940000164385.a.a.a.b	ENSGT00390000017581.b.b
Turbot	MODERN SPECIES		nab1a (ENSSMAG00000012947)	ENSSMAG00000013022	glsa (ENSSMAG00000012876)	stat1a (ENSSMAG00000012718)	mstna (ENSSMAG00000012687)	ENSSMAG00000012364	ENSSMAG00000012341	ENSSMAG00000012332	ENSSMAG00000023245	ENSSMAG00000022817	ENSSMAG00000012262	ENSSMAG00000012184	ENSSMAG00000012175	ENSSMAG00000012080 #21	ENSSMAG00000022266	ENSSMAG00000011966 #22	ENSSMAG00000029800	ENSSMAG00000011929	ENSSMAG00000011922	ENSSMAG00000011898	ENSSMAG00000011872	ENSSMAG00000011839	ENSSMAG00000011793	ENSSMAG00000030332	ENSSMAG00000011709	ENSSMAG00000011680	zswim2 (ENSSMAG00000011667)	ENSSMAG00000028603	ENSSMAG00000031472	ENSSMAG00000010712	ENSSMAG00000010706
Tongue sole	MODERN SPECIES	5	ENSCSEG00000006678	abi2b (ENSCSEG00000006631)	cyp20a1 (ENSCSEG00000006600)	tmem237b (ENSCSEG00000006585)	MPP4 (ENSCSEG00000006563)	ALS2 (ENSCSEG00000006486)	inpp4ab (ENSCSEG00000006311)	ENSCSEG00000006292	ENSCSEG00000006248	ENSCSEG00000006239	ENSCSEG00000006233	ENSCSEG00000006225	ENSCSEG00000006221	ENSCSEG00000006214	nr4a2b (ENSCSEG00000006209) #21	gpd2 (ENSCSEG00000006181) #22	ENSCSEG00000006174	ankrd10a (ENSCSEG00000006172)	ENSCSEG00000006167	ddx4 (ENSCSEG00000006039)	CNGA3 (ENSCSEG00000006024)	UBE3A (ENSCSEG00000006017)	atp1b1b (ENSCSEG00000006013)	DDRGK1 (ENSCSEG00000006009)	ENSCSEG00000005993	atg3 (ENSCSEG00000005972)	SLC19A2 (ENSCSEG00000005967)	ENSCSEG00000005963	adarb1a (ENSCSEG00000005961)	ENSCSEG00000005957	ENSCSEG00000005953
Carangaria_A	ANCESTRAL SPECIES	38	ENSGT01100000263513.a.b	ENSGT00940000165423.a.b	ENSGT00610000086518.b.a	ENSGT00940000156089.e.a	ENSGT00500000044939	ENSGT00390000005159.j	ENSGT00940000156444.c	ENSGT00940000155861.C.e	ENSGT00940000158299.b	ENSGT00940000164908	ENSGT00940000157360.c	ENSGT00940000156807.f	ENSGT00940000154657.A.d	ENSGT00950000183165.a.a.a	ENSGT00950000183038.a.b.b.b.r #21	ENSGT00390000001718.b #22	ENSGT00390000004923.C	ENSGT00940000162768.B.b	ENSGT00940000154360.A.b.b	ENSGT00940000155749.d	ENSGT00510000047334	ENSGT00550000074981	ENSGT00950000183140.a.a	ENSGT00940000168325.d	ENSGT00940000165235.a.a	ENSGT00390000006826	ENSGT00950000183184.a.a.b	ENSGT00940000163454.a.a.a.b.b	ENSGT00940000158398	ENSGT00390000003114.e.b.a	ENSGT00530000063607.b.j.b
Barramundi perch	MODERN SPECIES	115	ENSLCAG00010012182	ENSLCAG00010012176	ENSLCAG00010012155	abi2b (ENSLCAG00010012124)	cyp20a1 (ENSLCAG00010012080)	tmem237b (ENSLCAG00010012060)	MPP4 (ENSLCAG00010012045)	ALS2 (ENSLCAG00010011964)	CHRNA2 (ENSLCAG00010011867)	zgc:113142 (ENSLCAG00010011850)	inpp4ab (ENSLCAG00010011751)	ENSLCAG00010011730	ENSLCAG00010011642	TUBA4A (ENSLCAG00010011538)	NR4A2 (ENSLCAG00010011496) #21	gpd2 (ENSLCAG00010011410) #22	ENSLCAG00010011385	ENSLCAG00010011361	LRRC3 (ENSLCAG00010011355)	ATP7B (ENSLCAG00010010607)	eed (ENSLCAG00010010473)	pwp2h (ENSLCAG00010010467)	ENSLCAG00010010465	ENSLCAG00010010090	ENSLCAG00010009959	zswim2 (ENSLCAG00010009948)	FAM171B (ENSLCAG00010009946)	ENSLCAG00010009938	OSBPL11 (ENSLCAG00010009913)	gpd1c (ENSLCAG00010009903)	NCKAP5 (ENSLCAG00010009890)
Seriola	ANCESTRAL SPECIES	47	ENSGT01100000263513.a.b	ENSGT00940000165423.a.b	ENSGT00610000086518.b.a	ENSGT00940000156089.e.a	ENSGT00500000044939	ENSGT00390000005159.j	ENSGT00940000156444.c	ENSGT00940000155861.C.e	ENSGT00940000158299.b	ENSGT00940000164908	ENSGT00940000157360.c	ENSGT00940000156807.f	ENSGT00940000154657.A.d	ENSGT00950000183165.a.a.a	ENSGT00950000183038.a.b.b.b.r #21	ENSGT00390000001718.b #22	ENSGT00390000004923.C	ENSGT00940000162768.B.b	ENSGT00940000154360.A.b.b	ENSGT00940000155749.d	ENSGT00510000047334	ENSGT00550000074981	ENSGT00950000183140.a.a	ENSGT00940000155675.p.b	ENSGT00940000165235.a.a	ENSGT00390000006826	ENSGT00950000183184.a.a.b	ENSGT00390000017860.a.b.f	ENSGT00390000011204	ENSGT00940000164385.a.a.a.b	ENSGT00390000017581.b.b
Greater amberjack	MODERN SPECIES	7	ENSSDUG00000012835	ENSSDUG00000012818	abi2b (ENSSDUG00000012792)	ENSSDUG00000012774	cyp20a1 (ENSSDUG00000012751)	tmem237b (ENSSDUG00000012718)	MPP4 (ENSSDUG00000012636)	ALS2 (ENSSDUG00000012481)	CHRNA2 (ENSSDUG00000012342)	zgc:113142 (ENSSDUG00000012326)	inpp4ab (ENSSDUG00000012280)	ENSSDUG00000012129	ENSSDUG00000012079	TUBA4A (ENSSDUG00000012063)	nr4a2b (ENSSDUG00000011809) #21	gpd2 (ENSSDUG00000011657) #22	ENSSDUG00000011623	ENSSDUG00000011608	LRRC3 (ENSSDUG00000011592)	ATP7B (ENSSDUG00000011556)	eed (ENSSDUG00000011532)	pwp2h (ENSSDUG00000011462)	ENSSDUG00000011435	ENSSDUG00000011421	ENSSDUG00000011373	ENSSDUG00000011349	FAM171B (ENSSDUG00000011334)	zswim2 (ENSSDUG00000011305)	SLAIN1 (ENSSDUG00000011268)	mrps9 (ENSSDUG00000011236)	pou3f3b (ENSSDUG00000011212)
Yellowtail amberjack	MODERN SPECIES	3147	ALS2 (ENSSLDG00000010212)	ENSSLDG00000010157	tmem237b (ENSSLDG00000010122)	cyp20a1 (ENSSLDG00000010047)	abi2b (ENSSLDG00000010004)	ENSSLDG00000009979	ENSSLDG00000009703	ENSSLDG00000009626	ENSSLDG00000009607	ENSSLDG00000009473 ##31	KIF5C (ENSSLDG00000009394)	ENSSLDG00000009226	ENSSLDG00000009124	ENSSLDG00000009080	nr4a2b (ENSSLDG00000008882) #21	gpd2 (ENSSLDG00000008768) #22	ENSSLDG00000008738	pwp2h (ENSSLDG00000008651)	eed (ENSSLDG00000008607)	ATP7B (ENSSLDG00000008579)	LRRC3 (ENSSLDG00000008559)	ENSSLDG00000008518	ENSSLDG00000008487	ENSSLDG00000008443
Eupercaria	ANCESTRAL SPECIES	23	ENSGT01100000263513.a.b	ENSGT00940000165423.a.b	ENSGT00610000086518.b.a	ENSGT00940000156089.e.a	ENSGT00500000044939	ENSGT00390000005159.j	ENSGT00940000156444.c	ENSGT00940000155861.C.e	ENSGT00940000158299.b	ENSGT00940000164908	ENSGT00940000157360.c	ENSGT00940000156807.f	ENSGT00940000154657.A.d	ENSGT00950000183165.a.a.a	ENSGT00950000183038.a.b.b.b.r #21	ENSGT00390000001718.b #22	ENSGT00390000004923.C	ENSGT00940000162768.B.b	ENSGT00940000154360.A.b.b	ENSGT00940000155749.d	ENSGT00510000047334	ENSGT00550000074981	ENSGT00950000183140.a.a	ENSGT00940000155675.p.b	ENSGT00940000177931	ENSGT00940000168325	ENSGT00940000165235.a.a	ENSGT00390000006826	ENSGT00950000183184.a.a.b	ENSGT00390000017860.a.b.f	ENSGT00390000011204
Eupecaria_A	ANCESTRAL SPECIES	23	ENSGT01100000263513.a.b	ENSGT00940000165423.a.b	ENSGT00610000086518.b.a	ENSGT00940000156089.e.a	ENSGT00500000044939	ENSGT00390000005159.j	ENSGT00940000156444.c	ENSGT00940000155861.C.e	ENSGT00940000158299.b	ENSGT00940000164908	ENSGT00940000157360.c	ENSGT00940000156807.f	ENSGT00940000154657.A.d	ENSGT00950000183165.a.a.a	ENSGT00950000183038.a.b.b.b.r #21	ENSGT00390000001718.b #22	ENSGT00390000004923.C	ENSGT00940000162768.B.b	ENSGT00940000154360.A.b.b	ENSGT00940000155749.d	ENSGT00510000047334	ENSGT00550000074981	ENSGT00950000183140.a.a	ENSGT00940000155675.p.b	ENSGT00940000177931	ENSGT00940000168325	ENSGT00940000165235.a.a	ENSGT00390000006826	ENSGT00950000183184.a.a.b	ENSGT00390000017860.a.b.f	ENSGT00390000011204
Ballan wrasse	MODERN SPECIES	65	ENSLBEG00000005042	inpp4ab (ENSLBEG00000005082)	zgc:113142 (ENSLBEG00000005165)	CHRNA2 (ENSLBEG00000005188)	ALS2 (ENSLBEG00000005235)	MPP4 (ENSLBEG00000005345)	tmem237b (ENSLBEG00000005555)	cyp20a1 (ENSLBEG00000005612)	abi2b (ENSLBEG00000005666)	ENSLBEG00000005744	ENSLBEG00000005806	ENSLBEG00000005825	ENSLBEG00000005866	ENSLBEG00000005944	nr4a2b (ENSLBEG00000005973) #21	gpd2 (ENSLBEG00000006019) #22	ENSLBEG00000006143	ENSLBEG00000006201	LRRC3 (ENSLBEG00000006245)	ATP7B (ENSLBEG00000006266)	eed (ENSLBEG00000006356)	pwp2h (ENSLBEG00000006388)	ENSLBEG00000006488	ENSLBEG00000006549	ENSLBEG00000006775	zswim2 (ENSLBEG00000006844)	FAM171B (ENSLBEG00000006878)	SLAIN1 (ENSLBEG00000006927)	mrps9 (ENSLBEG00000006954)	ENSLBEG00000006977	pou3f3b (ENSLBEG00000007009)
Eupecaria_B	ANCESTRAL SPECIES	23	ENSGT01100000263513.a.b	ENSGT00940000165423.a.b	ENSGT00610000086518.b.a	ENSGT00940000156089.e.a	ENSGT00500000044939	ENSGT00390000005159.j	ENSGT00940000156444.c	ENSGT00940000155861.C.e	ENSGT00940000158299.b	ENSGT00940000164908	ENSGT00940000157360.c	ENSGT00940000156807.f	ENSGT00940000154657.A.d	ENSGT00950000183165.a.a.a	ENSGT00950000183038.a.b.b.b.r #21	ENSGT00390000001718.b #22	ENSGT00390000004923.C	ENSGT00940000162768.B.b	ENSGT00940000154360.A.b.b	ENSGT00940000155749.d	ENSGT00510000047334	ENSGT00550000074981	ENSGT00950000183140.a.a	ENSGT00940000155675.p.b	ENSGT00940000177931	ENSGT00940000168325	ENSGT00940000165235.a.a	ENSGT00390000006826	ENSGT00950000183184.a.a.b	ENSGT00390000017860.a.b.f	ENSGT00390000011204
Perciformes	ANCESTRAL SPECIES	27	ENSGT01100000263513.a.b	ENSGT00940000165423.a.b	ENSGT00610000086518.b.a	ENSGT00940000156089.e.a	ENSGT00500000044939	ENSGT00390000005159.j	ENSGT00940000156444.c	ENSGT00940000155861.C.e	ENSGT00940000158299.b	ENSGT00940000164908	ENSGT00940000157360.c	ENSGT00940000156807.f	ENSGT00940000154657.A.d	ENSGT00950000183165.a.a.a	ENSGT00950000183038.a.b.b.b.r #21	ENSGT00390000001718.b #22	ENSGT00390000004923.C	ENSGT00940000162768.B.b	ENSGT00940000154360.A.b.b	ENSGT00940000155749.d	ENSGT00510000047334	ENSGT00550000074981	ENSGT00950000183140.a.a	ENSGT00940000155675.p.b	ENSGT00940000177931	ENSGT00940000168325	ENSGT00940000165235.a.a	ENSGT00390000006826	ENSGT00950000183184.a.a.b	ENSGT00390000017860.a.b.f	ENSGT00390000011204
Perciformes_a	ANCESTRAL SPECIES	29	ENSGT00940000161625.m	ENSGT01100000263513.a.b	ENSGT00940000165423.a.b	ENSGT00940000156089.e.a	ENSGT00500000044939	ENSGT00390000005159.j	ENSGT00940000156444.c	ENSGT00940000155861.C.e	ENSGT00940000158299.b	ENSGT00940000164908	ENSGT00940000157360.c	ENSGT00940000156807.f	ENSGT00940000154657.A.d	ENSGT00950000183165.a.a.a	ENSGT00950000183038.a.b.b.b.r #21	ENSGT00390000001718.b #22	ENSGT00390000004923.C	ENSGT00940000162768.B.b	ENSGT00940000154360.A.b.b	ENSGT00940000155749.d	ENSGT00510000047334	ENSGT00550000074981	ENSGT00950000183140.a.a	ENSGT00940000177931	ENSGT00940000168325	ENSGT00940000165235.a.a	ENSGT00390000006826	ENSGT00950000183184.a.a.b	ENSGT00390000017860.a.b.f	ENSGT00390000011204	ENSGT00940000164385.a.a.a.b
Pike perch	MODERN SPECIES	9	PTPRN (ENSSLUG00000026093)	dnpep (ENSSLUG00000026092)	desmb (ENSSLUG00000026086)	tmem198b (ENSSLUG00000026085)	ENSSLUG00000026084	MAP3K2 (ENSSLUG00000026082)	sumo1 (ENSSLUG00000026080)	ENSSLUG00000026079	ENSSLUG00000026077	zgc:113142 (ENSSLUG00000026076)	inpp4ab (ENSSLUG00000026055)	ENSSLUG00000026004	ENSSLUG00000025976	ENSSLUG00000025963	nr4a2b (ENSSLUG00000025961) #21	gpd2 (ENSSLUG00000025959) #22	ENSSLUG00000025956	ENSSLUG00000025955	LRRC3 (ENSSLUG00000025954)	ATP7B (ENSSLUG00000025934)	pwp2h (ENSSLUG00000025908)	ENSSLUG00000025903	ENSSLUG00000025902	ENSSLUG00000025899	ENSSLUG00000025893	zswim2 (ENSSLUG00000025891)	FAM171B (ENSSLUG00000025890)	ENSSLUG00000025889	mrps9 (ENSSLUG00000025888)	pou3f3b (ENSSLUG00000025885)	ENSSLUG00000025884
Channel bull blenny	MODERN SPECIES	11	zgc:112023 (ENSCGOG00000020471)	ENSCGOG00000020469	ENSCGOG00000020468	abi2b (ENSCGOG00000020352)	cyp20a1 (ENSCGOG00000019942)	tmem237b (ENSCGOG00000019929)	MPP4 (ENSCGOG00000019924)	ALS2 (ENSCGOG00000019865)	CHRNA2 (ENSCGOG00000019821)	zgc:113142 (ENSCGOG00000019818)	inpp4ab (ENSCGOG00000018278)	ENSCGOG00000018232	ENSCGOG00000017369	ENSCGOG00000017339	nr4a2b (ENSCGOG00000017337) #21	gpd2 (ENSCGOG00000016825) #22	ENSCGOG00000016794	PCBP3 (ENSCGOG00000016792)	LRRC3 (ENSCGOG00000016789)	ATP7B (ENSCGOG00000014706)	eed (ENSCGOG00000014468)	pwp2h (ENSCGOG00000014224)	ENSCGOG00000014216	ENSCGOG00000014139	ENSCGOG00000014080	zswim2 (ENSCGOG00000014072)	FAM171B (ENSCGOG00000014069)	n6amt1 (ENSCGOG00000014068)	ENSCGOG00000014061	mrps9 (ENSCGOG00000013936)	pou3f3b (ENSCGOG00000013930)
Cottioidei	ANCESTRAL SPECIES	48	ENSGT00940000161625.m	ENSGT00940000165423.a.b	ENSGT00610000086518.b.a	ENSGT00940000156089.e.a	ENSGT00500000044939	ENSGT00390000005159.j	ENSGT00940000156444.c	ENSGT00940000155861.C.e	ENSGT00940000158299.b	ENSGT00940000164908	ENSGT00940000157360.c	ENSGT00940000156807.f	ENSGT00940000154657.A.d	ENSGT00950000183165.a.a.a	ENSGT00950000183038.a.b.b.b.r #21	ENSGT00390000001718.b #22	ENSGT00390000004923.C	ENSGT00940000162768.B.b	ENSGT00940000154360.A.b.b	ENSGT00940000155749.d	ENSGT00510000047334	ENSGT00550000074981	ENSGT00950000183140.a.a	ENSGT00940000155675.p.b	ENSGT00940000165235.a.a	ENSGT00390000006826	ENSGT00950000183184.a.a.b	ENSGT00940000163454.a.a.a.b.b	ENSGT00940000158398	ENSGT00390000003114.e.b.a	ENSGT00530000063607.b.j.b
Lumpfish	MODERN SPECIES	11	dmd (ENSCLMG00005009931)	gtf3c3 (ENSCLMG00005009928)	HECW2 (ENSCLMG00005007975)	abi2b (ENSCLMG00005007902)	cyp20a1 (ENSCLMG00005007868)	tmem237b (ENSCLMG00005007862)	MPP4 (ENSCLMG00005007848)	ALS2 (ENSCLMG00005006883)	zgc:113142 (ENSCLMG00005006858)	ENSCLMG00005006852	inpp4ab (ENSCLMG00005006837)	ENSCLMG00005006807	ENSCLMG00005006789	ENSCLMG00005006787	NR4A2 (ENSCLMG00005006785) #21	gpd2 (ENSCLMG00005005415) #22	ENSCLMG00005005395	ENSCLMG00005005299	LRRC3 (ENSCLMG00005005297)	ATP7B (ENSCLMG00005004095)	pwp2h (ENSCLMG00005004069)	ENSCLMG00005004061	ENSCLMG00005004058	ENSCLMG00005003879	zswim2 (ENSCLMG00005003873)	FAM171B (ENSCLMG00005003871)	ENSCLMG00005003860	ENSCLMG00005003870	OSBPL11 (ENSCLMG00005003844)	gpd1c (ENSCLMG00005003822)	NCKAP5 (ENSCLMG00005003817)
Stickleback	MODERN SPECIES	530	ENSGACG00000015043	ENSGACG00000015036	ENSGACG00000015033	abi2b (ENSGACG00000015031)	cyp20a1 (ENSGACG00000015020)	tmem237b (ENSGACG00000015016)	MPP4 (ENSGACG00000015002)	ALS2 (ENSGACG00000014998)	CHRNA2 (ENSGACG00000014995)	zgc:113142 (ENSGACG00000014992)	inpp4ab (ENSGACG00000014988)	ENSGACG00000014986	ENSGACG00000014984	ENSGACG00000014974	TUBA4A (ENSGACG00000014965)	gpd2 (ENSGACG00000014962) #22	ENSGACG00000014958	ENSGACG00000014955	LRRC3 (ENSGACG00000014953)	ATP7B (ENSGACG00000014945)	eed (ENSGACG00000014939)	pwp2h (ENSGACG00000014928)	ENSGACG00000014923	ENSGACG00000014916	ENSGACG00000014913	OSBPL11 (ENSGACG00000014904)	gpd1c (ENSGACG00000014899)	NCKAP5 (ENSGACG00000014896)	ENSGACG00000014894	actr3 (ENSGACG00000014876)
Eupecaria_C	ANCESTRAL SPECIES	30	ENSGT01100000263513.a.b	ENSGT00940000165423.a.b	ENSGT00610000086518.b.a	ENSGT00940000156089.e.a	ENSGT00500000044939	ENSGT00390000005159.j	ENSGT00940000156444.c	ENSGT00940000155861.C.e	ENSGT00940000158299.b	ENSGT00940000164908	ENSGT00940000157360.c	ENSGT00940000156807.f	ENSGT00940000154657.A.d	ENSGT00950000183165.a.a.a	ENSGT00950000183038.a.b.b.b.r #21	ENSGT00390000001718.b #22	ENSGT00390000004923.C	ENSGT00940000162768.B.b	ENSGT00940000154360.A.b.b	ENSGT00940000155749.d.cb	ENSGT00510000047334	ENSGT00550000074981	ENSGT00950000183140.a.a	ENSGT00940000155675.p.b	ENSGT00940000165235.a.a	ENSGT00390000006826	ENSGT00950000183184.a.a.b	ENSGT00390000017860.a.b.f	ENSGT00390000011204	ENSGT00940000164385.a.a.a.b	ENSGT00390000017581.b.b
Eupercaria_incertae_sedis	ANCESTRAL SPECIES	41									ENSGT00940000158299.b	ENSGT00940000164908	ENSGT00940000157360.c	ENSGT00940000156807.f	ENSGT00940000154657.A.d	ENSGT00950000183165.a.a.a	ENSGT00950000183038.a.b.b.b.r #21	ENSGT00390000001718.b #22	ENSGT00390000004923.C	ENSGT00940000162768.B.b	ENSGT00940000154360.A.b.b	ENSGT00940000155749.d.cb	ENSGT00510000047334	ENSGT00550000074981	ENSGT00950000183140.a.a	ENSGT00940000155675.p.b	ENSGT00940000165235.a.a	ENSGT00390000006826	ENSGT00950000183184.a.a.b	ENSGT00390000017860.a.b.f	ENSGT00390000011204	ENSGT00940000164385.a.a.a.b	ENSGT00390000017581.b.b
European seabass	MODERN SPECIES	15	ZEB2 (ENSDLAG00005008176)	ENSDLAG00005008220	ENSDLAG00005008233	ENSDLAG00005028082	ENSDLAG00005008382	ENSDLAG00005034195	ENSDLAG00005009168	ENSDLAG00005025101	ENSDLAG00005025769	ENSDLAG00005025771	ENSDLAG00005025783	ENSDLAG00005025813	ENSDLAG00005025884	ENSDLAG00005025985	ENSDLAG00005025989 #21	ENSDLAG00005025994 #22	ENSDLAG00005026002	ENSDLAG00005026006	ENSDLAG00005028144	ENSDLAG00005026064	ENSDLAG00005026359	ENSDLAG00005026165	ENSDLAG00005026175	ENSDLAG00005032136	ENSDLAG00005026180	ENSDLAG00005026194	ENSDLAG00005033457	ENSDLAG00005031664	ENSDLAG00005028117	ENSDLAG00005026210	ENSDLAG00005026212
Large yellow croaker	MODERN SPECIES	486	rcbtb1 (ENSLCRG00005022812)	cab39l (ENSLCRG00005022809)	MCF2L (ENSLCRG00005022788)	ENSLCRG00005022489 ##24	ENSLCRG00005022473	ENSLCRG00005022470	ENSLCRG00005022468	ENSLCRG00005022467	CHRNA2 (ENSLCRG00005022458)	zgc:113142 (ENSLCRG00005022456)	inpp4ab (ENSLCRG00005021544)	SLC9A2 (ENSLCRG00005021508)	ENSLCRG00005021485	ENSLCRG00005021477	nr4a2b (ENSLCRG00005021475) #21	gpd2 (ENSLCRG00005021231) #22	ENSLCRG00005021230	ENSLCRG00005021205	ENSLCRG00005021202	ATP7B (ENSLCRG00005020672)	eed (ENSLCRG00005020653)	pwp2h (ENSLCRG00005020649)	ENSLCRG00005020643	ENSLCRG00005020635	AOX1 (ENSLCRG00005020138)	ENSLCRG00005020126	bzw1a (ENSLCRG00005020120)	ENSLCRG00005020117	KYNU (ENSLCRG00005020095)	ENSLCRG00005020092	zeb2b (ENSLCRG00005020091)
Gilthead seabream	MODERN SPECIES	16	ENSSAUG00010023249	abi2b (ENSSAUG00010023257)	cyp20a1 (ENSSAUG00010023306)	tmem237b (ENSSAUG00010023302)	MPP4 (ENSSAUG00010023327)	ALS2 (ENSSAUG00010023701)	CHRNA2 (ENSSAUG00010023915)	zgc:113142 (ENSSAUG00010023917)	INPP4A (ENSSAUG00010023931)	ENSSAUG00010024145	ENSSAUG00010024176	ENSSAUG00010025045	ENSSAUG00010025046	TUBA4A (ENSSAUG00010025048)	nr4a2b (ENSSAUG00010025050) #21	gpd2 (ENSSAUG00010025057) #22	ENSSAUG00010025177	ENSSAUG00010025183	ENSSAUG00010025252	LRRC3 (ENSSAUG00010025253)	ATP7B (ENSSAUG00010025265)	pwp2h (ENSSAUG00010026036)	ENSSAUG00010026059	ENSSAUG00010026065	FAM171B (ENSSAUG00010026066)	ENSSAUG00010026067	ENSSAUG00010017832	ENSSAUG00010017834	ENSSAUG00010017836	ENSSAUG00010017837	ENSSAUG00010017840
Tetraodontidae	ANCESTRAL SPECIES	26	ENSGT00940000156444.c	ENSGT00940000155861.C.e	ENSGT00950000183184.a.a.b	ENSGT00390000011204	ENSGT00940000164385.a.a.a.b	ENSGT00390000002215.i.b	ENSGT00390000003114.e.b.a	ENSGT00390000007225	ENSGT00940000164897.a.b	ENSGT00940000159606	ENSGT00940000158239.a.b	ENSGT00940000164908	ENSGT00940000157360.c	ENSGT00950000183165.b.b.b.b	ENSGT00950000183165.a.a.a	ENSGT00390000001718.b #22	ENSGT00390000004923.C	ENSGT00940000162768.B.b	ENSGT00940000155749.d	ENSGT00510000047334	ENSGT00550000074981	ENSGT00950000183140.a.a	ENSGT00940000155675.p.b	ENSGT00940000165235.a.a	ENSGT00950000183138.a.b.r.a	ENSGT00730000111696.a	ENSGT00940000162403	ENSGT00950000183014.f.a	ENSGT00940000166383	ENSGT00950000182910.a.a.d	ENSGT00390000003896
Tetraodon	MODERN SPECIES	18	cyp20a1 (ENSTNIG00000017178)	ENSTNIG00000000361	ALS2 (ENSTNIG00000017180)	ENSTNIG00000017181	mrps9 (ENSTNIG00000003463)	pou3f3b (ENSTNIG00000003464)	LYPD1 (ENSTNIG00000010625)	gpd1c (ENSTNIG00000010624)	ENSTNIG00000000037	cdk15 (ENSTNIG00000010623)	fzd7a (ENSTNIG00000010622)	zgc:113142 (ENSTNIG00000010621)	inpp4ab (ENSTNIG00000010620)	TUBA4A (ENSTNIG00000010619)	TUBA4A (ENSTNIG00000010618)	gpd2 (ENSTNIG00000010617) #22	ENSTNIG00000010616	ENSTNIG00000010615	ATP7B (ENSTNIG00000010614)	eed (ENSTNIG00000001661)	pwp2h (ENSTNIG00000010613)	ENSTNIG00000010612	ENSTNIG00000010611	ENSTNIG00000010610	mlpha (ENSTNIG00000010609)	ENSTNIG00000010608 ##15	ENSTNIG00000019444	RGN (ENSTNIG00000010607)	vps16 (ENSTNIG00000010606)	arl11 (ENSTNIG00000010605)	eef1b2 (ENSTNIG00000010604)
Fugu	MODERN SPECIES	20	ENSTRUG00000028398	ENSTRUG00000028067	ENSTRUG00000029842	ENSTRUG00000033327	actr3 (ENSTRUG00000010618)	LYPD1 (ENSTRUG00000010883)	gpd1c (ENSTRUG00000010970)	dph3 (ENSTRUG00000011120)	ENSTRUG00000011124	cdk15 (ENSTRUG00000011133)	fzd7a (ENSTRUG00000027540)	zgc:113142 (ENSTRUG00000011355)	inpp4ab (ENSTRUG00000011479)	ENSTRUG00000030198	ENSTRUG00000033060	gpd2 (ENSTRUG00000002012) #22	ENSTRUG00000027802	ENSTRUG00000029949	ENSTRUG00000013604	pwp2h (ENSTRUG00000013258)	ENSTRUG00000013249	ENSTRUG00000032570	ENSTRUG00000011835	mlpha (ENSTRUG00000011756)	cd59 (ENSTRUG00000022452)	ENSTRUG00000031847	eef1b2 (ENSTRUG00000011667)	arl11 (ENSTRUG00000011561)	cavin2b (ENSTRUG00000011526)	vps16 (ENSTRUG00000011267)	rgn (ENSTRUG00000011178)
Pinecone sodierfish	MODERN SPECIES	11	cybb (ENSMMDG00005006624)	ENSMMDG00005006630	ENSMMDG00005006634	ENSMMDG00005006637	ENSMMDG00005006639	ENSMMDG00005006641	plaat1l (ENSMMDG00005006643)	ENSMMDG00005006646	chrna2a (ENSMMDG00005006649)	zgc:113142 (ENSMMDG00005006652)	inpp4ab (ENSMMDG00005006689)	ENSMMDG00005007609	ENSMMDG00005007641	ENSMMDG00005007653	NR4A2 (ENSMMDG00005007659) #21	gpd2 (ENSMMDG00005007801) #22	ENSMMDG00005007805	ENSMMDG00005007814	LRRC3 (ENSMMDG00005007869)	ATP7B (ENSMMDG00005007871)	eed (ENSMMDG00005007873)	pwp2h (ENSMMDG00005007880)	ENSMMDG00005000081	ENSMMDG00005000123	zswim2 (ENSMMDG00005000318)	FAM171B (ENSMMDG00005000328)	SLAIN1 (ENSMMDG00005000336)	mrps9 (ENSMMDG00005000347)	pou3f3b (ENSMMDG00005000354)	ENSMMDG00005000359	actr3 (ENSMMDG00005000371)
Cod	MODERN SPECIES	17	ENSGMOG00000034751	ENSGMOG00000002692	ENSGMOG00000024185	ENSGMOG00000034693	ENSGMOG00000032421	ENSGMOG00000033819	ENSGMOG00000033588	ENSGMOG00000035857	ENSGMOG00000032525	ENSGMOG00000036806	ENSGMOG00000026836	ENSGMOG00000033935	ENSGMOG00000024984	ENSGMOG00000032745	ENSGMOG00000003742 #21	ENSGMOG00000003712 #22	ENSGMOG00000026705	ENSGMOG00000033410	ENSGMOG00000025342	ENSGMOG00000011992	ENSGMOG00000034505	ENSGMOG00000017288	ENSGMOG00000023421	ENSGMOG00000031169	ENSGMOG00000025423	ENSGMOG00000023586	ENSGMOG00000015745	ENSGMOG00000025237	ENSGMOG00000027522	ENSGMOG00000036469	ENSGMOG00000004512
Protacanthopterygii	ANCESTRAL SPECIES	66	ENSGT00940000154505.A.c	ENSGT00390000001101	ENSGT00940000158737.h	ENSGT00940000155050.b	ENSGT01030000234579.C	ENSGT00940000166950	ENSGT00940000155502	ENSGT00390000003338	ENSGT00940000161508.b	ENSGT00940000155126.s.a	ENSGT00390000004553.f	ENSGT00940000160059.a.b.a	ENSGT00550000075037	ENSGT00950000183165.a.a.b	ENSGT00950000183038.a.b.b.b.r #21	ENSGT00390000001718.b #22	ENSGT01000000221844	ENSGT00550000074981	ENSGT01000000214434.B.a.b	ENSGT00990000204351	ENSGT00940000155749.d	ENSGT00390000004056	ENSGT00510000047334	ENSGT00940000153695.B	ENSGT00390000018525.a.b.e.a	ENSGT00940000160000	ENSGT00390000002188	ENSGT00390000017916	ENSGT00940000155515.a.a ##15	ENSGT00390000008812.a.b	ENSGT00940000155248.vb.f
Salmoninae	DUPLICATION
Salmoninae	ANCESTRAL SPECIES																	ENSGT00390000001718.b.a #22
Huchen	MODERN SPECIES	10446																ENSHHUG00000011201 #22
Salmoninae_a	ANCESTRAL SPECIES																	ENSGT00390000001718.b.a #22
Salmo	ANCESTRAL SPECIES																	ENSGT00390000001718.b.a #22
River trout	MODERN SPECIES	27	ctps1a (ENSSTUG00000040104)	rab42a (ENSSTUG00000040045)	gmeb1 (ENSSTUG00000040018)	ENSSTUG00000040010	ITLN1 (ENSSTUG00000040002)	ENSSTUG00000039991	PTPRU (ENSSTUG00000039969)	ENSSTUG00000039960	ENSSTUG00000039907	ENSSTUG00000039895	ENSSTUG00000039884	serinc2 (ENSSTUG00000039590)	ENSSTUG00000039572	edn2 (ENSSTUG00000039566)	ENSSTUG00000039525	gpd2 (ENSSTUG00000039497) #22	oprd1b (ENSSTUG00000039487)	tent5bb (ENSSTUG00000039480)	ZDHHC18 (ENSSTUG00000039477)	ARID1A (ENSSTUG00000038000)	tbxta (ENSSTUG00000037930)	nudc (ENSSTUG00000037883)	NR0B2 (ENSSTUG00000037871)	ENSSTUG00000037859	tpbga (ENSSTUG00000037829)	TMEM222 (ENSSTUG00000037815)	paqr7a (ENSSTUG00000037799)	sh3bgrl3 (ENSSTUG00000037775)	TRAPPC9 (ENSSTUG00000037646)	kcnk9 (ENSSTUG00000037630)	ENSSTUG00000037521
Salmoninae	DUPLICATION
Salmoninae	DUPLICATION
Salmoninae	ANCESTRAL SPECIES	57	ENSGT00940000154505.A.c	ENSGT00390000001101.c.b.a	ENSGT01030000234579.C	ENSGT00940000166950	ENSGT00940000155502	ENSGT00390000003338.y	ENSGT00940000161508.b.o.b.a	ENSGT00390000003338.z	ENSGT00940000161508.b.o.a	ENSGT00940000155126.s.a.k.b	ENSGT00390000004553.f.b.a.a	ENSGT00940000160059.a.b.a	ENSGT00550000075037.b	ENSGT00950000183165.a.a.b	ENSGT00950000183038.a.b.b.b.r #21	ENSGT00390000001718.b.b.a.a #22	ENSGT01000000221844	ENSGT00550000074981	ENSGT01000000214434.B.a.b.a	ENSGT00990000204351	ENSGT00940000155749.d	ENSGT00390000004056	ENSGT00510000047334	ENSGT00940000153695.B.d	ENSGT00940000160000.e	ENSGT00390000002188	ENSGT00390000017916	ENSGT00940000155515.a.a.g.b ##15	ENSGT00390000008812.a.b.c.a	ENSGT00940000155248.vb.f.a.b	ENSGT00390000012731.a.b.i
Huchen	MODERN SPECIES	4193													stk16 (ENSHHUG00000042458)	ENSHHUG00000042361	nr4a2b (ENSHHUG00000042348) #21	gpd2 (ENSHHUG00000042210) #22
Salmoninae_a	ANCESTRAL SPECIES	59	ENSGT00940000154505.A.c	ENSGT00390000001101.c.b.a	ENSGT01030000234579.C	ENSGT00960000192080	ENSGT00940000155502	ENSGT00390000003338.y	ENSGT00940000161508.b.o.b.a	ENSGT00390000003338.z	ENSGT00940000161508.b.o.a	ENSGT00940000155126.s.a.k.b	ENSGT00390000004553.f.b.a.a	ENSGT00940000160059.a.b.a	ENSGT00550000075037.b	ENSGT00950000183165.a.a.b	ENSGT00950000183038.a.b.b.b.r #21	ENSGT00390000001718.b.b.a.a #22	ENSGT01000000221844	ENSGT00390000001718.b.b.a.b #22	ENSGT00550000074981	ENSGT01000000214434.B.a.b.a	ENSGT00990000204351.a	ENSGT01000000214434.B.a.b.b	ENSGT00990000204351.b	ENSGT00940000155749.d	ENSGT00390000004056	ENSGT00510000047334	ENSGT00940000153695.B.d	ENSGT00940000160000.e	ENSGT00390000002188	ENSGT00390000017916	ENSGT00940000155515.a.a.h.a.a ##15
Salmo	ANCESTRAL SPECIES	151														ENSGT00950000183165.a.a.b.f	ENSGT00950000183038.a.b.b.b.r.e #21	ENSGT00390000001718.b.b.a.a #22	ENSGT01000000221844	ENSGT01000000214434.B.a.b.b	ENSGT00990000204351.b	ENSGT00940000155749.d.db	ENSGT00940000153695.B.c.b	ENSGT00940000156207.b.c.a.b.b.b	ENSGT00940000156207.b.c.b.a.a.b	ENSGT00940000156207.b.c.b.a.a.a	ENSGT00390000018525.a.b.e.a.g	ENSGT00940000160000.f	ENSGT00390000017916.d	ENSGT00940000155515.a.a.g.a ##15	ENSGT00940000153514.b.m.b.h	ENSGT00950000183014.f.a.x	ENSGT00940000162403
River trout	MODERN SPECIES	36	atp1b1b (ENSSTUG00000009780)	TMEM131 (ENSSTUG00000009816)	CNGA3 (ENSSTUG00000010584)	UBE3A (ENSSTUG00000010620)	ENSSTUG00000011024	kpnb3 (ENSSTUG00000011045)	nudt15 (ENSSTUG00000011453)	cpo (ENSSTUG00000011487)	cpo (ENSSTUG00000011526)	fn1b (ENSSTUG00000011785)	atic (ENSSTUG00000018666)	mnx2b (ENSSTUG00000018928)	stk16 (ENSSTUG00000018934)	tuba8l2 (ENSSTUG00000018945)	nr4a2b (ENSSTUG00000018948) #21	gpd2 (ENSSTUG00000019084) #22	ENSSTUG00000020363	ENSSTUG00000017764	ENSSTUG00000018432	ATP7B (ENSSTUG00000018499)	hikeshi (ENSSTUG00000021976)	eed (ENSSTUG00000021992)	ENSSTUG00000022172	ENSSTUG00000022200	ENSSTUG00000022212	sft2d2b (ENSSTUG00000022216)	ENSSTUG00000022239	ENSSTUG00000022260	ENSSTUG00000022271 ##15	ENSSTUG00000022288	arl6ip6 (ENSSTUG00000022298) #17
Atlantic salmon	MODERN SPECIES	7	prozb (ENSSSAG00000113317)	pcid2 (ENSSSAG00000055926)	AT233 (ENSSSAG00000008620)	ENSSSAG00000108016	ENSSSAG00000049578	ENSSSAG00000016020	ENSSSAG00000008813	ENSSSAG00000007260	cpo (ENSSSAG00000007265)	fn1b (ENSSSAG00000105424)	atic (ENSSSAG00000054060)	ENSSSAG00000082902	stk16 (ENSSSAG00000042133)	tuba8l2 (ENSSSAG00000042151)	ENSSSAG00000015387 #21	ENSSSAG00000042287 #22	ENSSSAG00000116115	ENSSSAG00000045894	glpk3 (ENSSSAG00000045972)	ENSSSAG00000093775	ENSSSAG00000046633	ENSSSAG00000040247	ENSSSAG00000046298	ENSSSAG00000046310	ENSSSAG00000046459	ENSSSAG00000033202	sft2d2b (ENSSSAG00000093441)	ENSSSAG00000109602	ENSSSAG00000054519	ENSSSAG00000101961 ##15	ENSSSAG00000092634
Oncorhynchus	ANCESTRAL SPECIES	66	ENSGT00390000001101.c.b.b.a	ENSGT01030000234579.C.t.b.a	ENSGT01030000234579.C.t.b.b	ENSGT00940000158737.h.c	ENSGT00940000155050.b.b	ENSGT00940000155502	ENSGT00390000003338.z	ENSGT00940000161508.b.o.b.a	ENSGT00940000161508.b.o.a	ENSGT00940000155126.s.a.k.b	ENSGT00390000004553.f.b.a.a	ENSGT00940000160059.a.b.a	ENSGT00550000075037.b	ENSGT00950000183165.a.a.b	ENSGT00950000183038.a.b.b.b.r #21	ENSGT00390000001718.b.b.a.a #22	ENSGT00390000001718.b.b.b #22	ENSGT01000000221844	ENSGT00550000074981.c	ENSGT01000000214434.B.a.b.a	ENSGT00990000204351.b	ENSGT00940000155749.d	ENSGT00390000004056.pb	ENSGT00510000047334.w	ENSGT00390000004056.qb	ENSGT00510000047334.x	ENSGT00940000153695.B.d	ENSGT00940000156207.b.c.a.b.b.b	ENSGT00940000156207.b.c.b.a.a.b	ENSGT00940000156207.b.c.b.a.a.a	ENSGT00390000018525.a.b.e.a
Rainbow trout	MODERN SPECIES	9	pcid2 (ENSOMYG00000062291)	ENSOMYG00000060099	ENSOMYG00000071238	ENSOMYG00000006431	ENSOMYG00000007510	ENSOMYG00000062246	ENSOMYG00000074365	ENSOMYG00000067824	cpo (ENSOMYG00000004299)	fn1b (ENSOMYG00000067929)	atic (ENSOMYG00000059980)	ENSOMYG00000055057	ENSOMYG00000007531	tuba8l2 (ENSOMYG00000007598)	ENSOMYG00000007694 #21	ENSOMYG00000007725 #22	ENSOMYG00000008885	ENSOMYG00000008375	ENSOMYG00000008599	ENSOMYG00000009899	ck073 (ENSOMYG00000061426)	ENSOMYG00000076427	ENSOMYG00000013419	ENSOMYG00000013438	ENSOMYG00000013450	sft2d2b (ENSOMYG00000065190)	ENSOMYG00000056166	ENSOMYG00000067658	ENSOMYG00000057369	ENSOMYG00000010509 ##15	ENSOMYG00000010566
Oncorhynchus_a	ANCESTRAL SPECIES																	ENSGT00390000001718.b.b.a.a #22
Chinook salmon	MODERN SPECIES	821											fn1b (ENSOTSG00005022521)	atic (ENSOTSG00005022486)	ENSOTSG00005022483	stk16 (ENSOTSG00005022465)	tuba8l2 (ENSOTSG00005022426)	gpd2 (ENSOTSG00005017920) #22	pwp2h (ENSOTSG00005017885)	ENSOTSG00005017852	ENSOTSG00005017851	ENSOTSG00005017850
Salmoninae	ANCESTRAL SPECIES																	ENSGT00390000001718.b.b.a.b #22
Huchen	DUPLICATION
Huchen	MODERN SPECIES	9151																ENSHHUG00000005952 #22	ENSHHUG00000005951	ENSHHUG00000005939 #22
Huchen	MODERN SPECIES	9151														ENSHHUG00000005952 #22	ENSHHUG00000005951	ENSHHUG00000005939 #22
Salmoninae_a	ANCESTRAL SPECIES	59	ENSGT01030000234579.C	ENSGT00960000192080	ENSGT00940000155502	ENSGT00390000003338.y	ENSGT00940000161508.b.o.b.a	ENSGT00390000003338.z	ENSGT00940000161508.b.o.a	ENSGT00940000155126.s.a.k.b	ENSGT00390000004553.f.b.a.a	ENSGT00940000160059.a.b.a	ENSGT00550000075037.b	ENSGT00950000183165.a.a.b	ENSGT00950000183038.a.b.b.b.r #21	ENSGT00390000001718.b.b.a.a #22	ENSGT01000000221844	ENSGT00390000001718.b.b.a.b #22	ENSGT00550000074981	ENSGT01000000214434.B.a.b.a	ENSGT00990000204351.a	ENSGT01000000214434.B.a.b.b	ENSGT00990000204351.b	ENSGT00940000155749.d	ENSGT00390000004056	ENSGT00510000047334	ENSGT00940000153695.B.d	ENSGT00940000160000.e	ENSGT00390000002188	ENSGT00390000017916	ENSGT00940000155515.a.a.h.a.a ##15	ENSGT00940000155515.a.a.h.a.b ##15	ENSGT00390000008812.a.b.c.b
Oncorhynchus	ANCESTRAL SPECIES																	ENSGT00390000001718.b.b.a.b #22
Oncorhynchus_a	ANCESTRAL SPECIES	147								ENSGT00940000155126.s.a.k.b	ENSGT00390000004553.f.b.a.a	ENSGT00940000164719	ENSGT00390000004553.f.b.a.b	ENSGT00940000160059.a.b.a	ENSGT00550000075037.b	ENSGT00950000183165.a.a.b	ENSGT00950000183038.a.b.b.b.r #21	ENSGT00390000001718.b.b.a.b #22	ENSGT00550000074981.c	ENSGT01000000214434.B.a.b.a	ENSGT00990000204351.a	ENSGT00940000155749.d	ENSGT00390000004056.pb	ENSGT00510000047334.w	ENSGT00940000153695.B.d	ENSGT00940000156207.b.c.a.b.b.b	ENSGT00940000156207.b.c.b.a.a.b	ENSGT00390000018525.a.b.e.a	ENSGT00940000160000.f	ENSGT00390000002188	ENSGT00390000017916	ENSGT00940000155515.a.a.h.a.a ##15
Coho salmon	MODERN SPECIES	34	ENSOKIG00005050211	ENSOKIG00005050210	MPC2 (ENSOKIG00005050208)	ENSOKIG00005050197	SLC19A2 (ENSOKIG00005050193)	atg3 (ENSOKIG00005050186)	ENSOKIG00005050176	faimb (ENSOKIG00005050166)	ENSOKIG00005050160	fn1b (ENSOKIG00005049616)	atic (ENSOKIG00005049252)	ENSOKIG00005049214	stk16 (ENSOKIG00005049212)	tuba8l2 (ENSOKIG00005049209)	NR4A2 (ENSOKIG00005049206) #21	ENSOKIG00005048778 #22	pwp2h (ENSOKIG00005048674)	GK3 (ENSOKIG00005048415)	ENSOKIG00005048379	ATP7B (ENSOKIG00005046428)	hikeshi (ENSOKIG00005046200)	eed (ENSOKIG00005046074)	ENSOKIG00005046051	ENSOKIG00005046040	ENSOKIG00005046033	sft2d2b (ENSOKIG00005046022)	ENSOKIG00005046015	ENSOKIG00005046007	ENSOKIG00005046001	ENSOKIG00005042513 ##15	cdk5r2a (ENSOKIG00005042176)
Salmo	ANCESTRAL SPECIES	108	ENSGT00940000154474.B.a.g.c	ENSGT00940000154474.B.b.b	ENSGT00390000001101.c.a	ENSGT01030000234579.C.u.b	ENSGT00530000063614.a.a.fb.b	ENSGT00940000155502.w	ENSGT00390000003338.y	ENSGT00940000161508.b.o.b.a	ENSGT00940000161508.b.o.a.e	ENSGT00940000155126.s.a.k.b.b	ENSGT00390000004553.f.a.a	ENSGT00940000160059.a.b.a.d	ENSGT00550000075037.b.b	ENSGT00950000183165.a.a.b.e	ENSGT00950000183038.a.b.b.b.r.f #21	ENSGT00390000001718.b.b.a.b #22	ENSGT00550000074981	ENSGT01000000214434.B.a.b.a	ENSGT00990000204351.a	ENSGT00940000155749.d.eb	ENSGT00390000004056	ENSGT00510000047334	ENSGT00940000153695.B.c.a	ENSGT00390000018525.a.b.e.a.h	ENSGT00940000160000.e	ENSGT00390000002188
River trout	MODERN SPECIES	32	pcid2 (ENSSTUG00000049019)	ATP1B1 (ENSSTUG00000049004)	TMEM131 (ENSSTUG00000048577)	CNGA3 (ENSSTUG00000048409)	ENSSTUG00000048245	kpnb3 (ENSSTUG00000047830)	nudt15 (ENSSTUG00000047788)	cpo (ENSSTUG00000047773)	cpo (ENSSTUG00000047754)	fn1b (ENSSTUG00000047017)	atic (ENSSTUG00000046839)	mnx2b (ENSSTUG00000046816)	stk16 (ENSSTUG00000046809)	tuba8l2 (ENSSTUG00000046796)	NR4A2 (ENSSTUG00000046787) #21	gpd2 (ENSSTUG00000046498) #22	pwp2h (ENSSTUG00000046190)	ENSSTUG00000045611	ENSSTUG00000045582	ATP7B (ENSSTUG00000040444)	hikeshi (ENSSTUG00000040334)	eed (ENSSTUG00000040198)	ENSSTUG00000040166	ENSSTUG00000040149	ENSSTUG00000040145	sft2d2b (ENSSTUG00000040141)	ENSSTUG00000040133	ENSSTUG00000040125	ENSSTUG00000040103	ENSSTUG00000040098 ##15	ENSSTUG00000040095
Salmoninae	ANCESTRAL SPECIES																	ENSGT00390000001718.b.b.b #22
Huchen	MODERN SPECIES	7111													stk16 (ENSHHUG00000013443)	ENSHHUG00000013407	NR4A2 (ENSHHUG00000013393) #21	ENSHHUG00000013384 #22
Salmoninae_a	ANCESTRAL SPECIES																	ENSGT00390000001718.b.b.b #22
Oncorhynchus	ANCESTRAL SPECIES	66	ENSGT01030000234579.C.t.b.a	ENSGT01030000234579.C.t.b.b	ENSGT00940000158737.h.c	ENSGT00940000155050.b.b	ENSGT00940000155502	ENSGT00390000003338.z	ENSGT00940000161508.b.o.b.a	ENSGT00940000161508.b.o.a	ENSGT00940000155126.s.a.k.b	ENSGT00390000004553.f.b.a.a	ENSGT00940000160059.a.b.a	ENSGT00550000075037.b	ENSGT00950000183165.a.a.b	ENSGT00950000183038.a.b.b.b.r #21	ENSGT00390000001718.b.b.a.a #22	ENSGT00390000001718.b.b.b #22	ENSGT01000000221844	ENSGT00550000074981.c	ENSGT01000000214434.B.a.b.a	ENSGT00990000204351.b	ENSGT00940000155749.d	ENSGT00390000004056.pb	ENSGT00510000047334.w	ENSGT00390000004056.qb	ENSGT00510000047334.x	ENSGT00940000153695.B.d	ENSGT00940000156207.b.c.a.b.b.b	ENSGT00940000156207.b.c.b.a.a.b	ENSGT00940000156207.b.c.b.a.a.a	ENSGT00390000018525.a.b.e.a	ENSGT00940000160000.f
Rainbow trout	MODERN SPECIES	28	ENSOMYG00000053905	ENSOMYG00000007384	ENSOMYG00000066580	ENSOMYG00000002611	ENSOMYG00000075093	cpo (ENSOMYG00000004234)	cpo (ENSOMYG00000004128)	fn1b (ENSOMYG00000006459)	ENSOMYG00000074661	ENSOMYG00000060190	atic (ENSOMYG00000008659)	ENSOMYG00000009675	stk16 (ENSOMYG00000009701)	tuba8l2 (ENSOMYG00000009711)	ENSOMYG00000060607 #21	ENSOMYG00000056151 #22	ENSOMYG00000069237	ENSOMYG00000007956	ENSOMYG00000055697	ENSOMYG00000008902	ENSOMYG00000008730	ck073 (ENSOMYG00000009818)	ENSOMYG00000010041	ENSOMYG00000010168	ENSOMYG00000010228	ENSOMYG00000055017	sft2d2b (ENSOMYG00000056798)	ENSOMYG00000049924	ENSOMYG00000010393	ENSOMYG00000010486	ENSOMYG00000010528 ##15
Northern pike	MODERN SPECIES	21	TMEM131 (ENSELUG00000001834)	CNGA3 (ENSELUG00000001838)	UBE3A (ENSELUG00000001840)	ENSELUG00000001842	kpnb3 (ENSELUG00000001242)	nudt15 (ENSELUG00000001847)	cpo (ENSELUG00000000051)	cpo (ENSELUG00000001515)	cpo (ENSELUG00000000052)	fn1b (ENSELUG00000001859)	atic (ENSELUG00000001864)	mnx2b (ENSELUG00000001866)	stk16 (ENSELUG00000001868)	tuba8l2 (ENSELUG00000001871)	NR4A2 (ENSELUG00000001873) #21	gpd2 (ENSELUG00000001876) #22	ENSELUG00000034064	pwp2h (ENSELUG00000001878)	ENSELUG00000001883	ENSELUG00000001886	ATP7B (ENSELUG00000001889)	hikeshi (ENSELUG00000001892)	eed (ENSELUG00000001896)	ENSELUG00000001900	ENSELUG00000001909	ENSELUG00000001903	sft2d2b (ENSELUG00000001914)	ENSELUG00000001301	iqcb1 (ENSELUG00000001921)	ENSELUG00000001926	ENSELUG00000001957 ##15
Otomorpha	ANCESTRAL SPECIES	292							ENSGT01050000244848.C.a.h	ENSGT00390000005530.a.a	ENSGT00950000183046.a.a.gb	ENSGT00940000156449.b.a	ENSGT00940000155972.A	ENSGT00940000155995.e.a	ENSGT00940000153476.b.o.b	ENSGT00940000157904.a.a	ENSGT00950000183038.a.b.b.b.r #21	ENSGT00390000001718.b #22	ENSGT00980000202863	ENSGT00390000014376.c.b	ENSGT00940000155773.a ##31	ENSGT00940000155655.A ##33	ENSGT00940000157230.b #34	ENSGT00940000155359.w.b #35	ENSGT00530000063836.a #36	ENSGT01050000244842.a.b.b.a.a.a ##37	ENSGT01050000244842.a.b.b.a.a.b ##37	ENSGT01100000263555.a.a.a	ENSGT00940000156082.a.b	ENSGT00730000111116	ENSGT00940000156972.d	ENSGT00390000005372.f	ENSGT00940000163944
Otophysi	ANCESTRAL SPECIES	44								ENSGT00390000005530.a.a	ENSGT00950000183046.a.a.gb	ENSGT00940000156449.b.a	ENSGT00940000155972.A	ENSGT00940000155995.e.a	ENSGT00940000153476.b.o.b	ENSGT00940000157904.a.a	ENSGT00950000183038.a.b.b.b.r #21	ENSGT00390000001718.b #22	ENSGT00530000063734.a.f #25	ENSGT00980000202863	ENSGT00390000014376.c.b	ENSGT00940000155773.a ##31	ENSGT00940000155655.A ##33	ENSGT00940000157230.b #34	ENSGT00940000155359.w.b #35	ENSGT00530000063836.a #36	ENSGT00950000183184.a.a.b	ENSGT00390000006826	ENSGT00940000159898	ENSGT00940000165235.a.a	ENSGT00940000156186.l.a	ENSGT00940000155675.p.b	ENSGT00940000168325
Characiphysae	ANCESTRAL SPECIES	18								ENSGT01050000244848.C.a.h	ENSGT00390000005530.a.a	ENSGT00950000183046.a.a.gb	ENSGT00940000156449.b.a	ENSGT00940000155972.A	ENSGT00940000155995.e.a	ENSGT00940000153476.b.o.b	ENSGT00950000183038.a.b.b.b.r #21	ENSGT00390000001718.b #22	ENSGT00530000063734.a.f #25	ENSGT00390000014376.c.b	ENSGT00940000155773.a ##31	ENSGT00940000155655.A ##33	ENSGT00940000157230.b #34	ENSGT00940000155359.w.b.bb #35	ENSGT00530000063836.a #36	ENSGT00950000183184.a.a.b	ENSGT00390000006826	ENSGT00940000165235.a.a	ENSGT00940000156186.l.a	ENSGT00940000155675.p.b	ENSGT00940000168325	ENSGT00950000183140.a.a	ENSGT00940000155489.a
Characiphysae_b	ANCESTRAL SPECIES	127								ENSGT01050000244848.C.a.h	ENSGT00390000005530.a.a	ENSGT00950000183046.a.a.gb	ENSGT00940000156449.b.a	ENSGT00940000155972.A	ENSGT00940000155995.e.a	ENSGT00940000153476.b.o.b	ENSGT00950000183038.a.b.b.b.r #21	ENSGT00390000001718.b #22	ENSGT00530000063734.a.f #25	ENSGT00390000014376.c.b	ENSGT00940000155773.a ##31	ENSGT00940000155655.A ##33	ENSGT00940000157230.b #34	ENSGT00940000155359.w.b.cb #35	ENSGT00940000155359.w.b.bb #35	ENSGT00530000063836.a #36	ENSGT00950000183184.a.a.b	ENSGT00390000006826	ENSGT00940000165235.a.a	ENSGT00940000156186.l.a	ENSGT00940000155675.p.b	ENSGT00940000168325	ENSGT00950000183140.a.a
Characoidei	ANCESTRAL SPECIES	124								ENSGT00390000005530.a.a	ENSGT00950000183046.a.a.gb	ENSGT00940000156449.b.a	ENSGT00940000176946.c	ENSGT00940000155972.A	ENSGT00940000155995.e.a	ENSGT00940000153476.b.o.b	ENSGT00950000183038.a.b.b.b.r #21	ENSGT00390000001718.b #22	ENSGT00530000063734.a.f #25	ENSGT00390000014376.c.b	ENSGT00940000155773.a.a ##31	ENSGT00940000155655.A ##33	ENSGT00940000157230.b #34	ENSGT00940000155359.w.b.bb #35	ENSGT00530000063836.a #36	ENSGT00950000183184.a.a.b	ENSGT00390000006826	ENSGT00940000165235.a.a	ENSGT00940000156186.l.a	ENSGT00940000155675.p.b	ENSGT00940000168325	ENSGT00950000183140.a.a	ENSGT00940000155489.a
Red-bellied piranha	MODERN SPECIES	835												ENSPNAG00000016425	slc15a1b (ENSPNAG00000016501)	stk24b (ENSPNAG00000016531)	nr4a2b (ENSPNAG00000016541) #21	gpd2 (ENSPNAG00000016617) #22
Mexicana tetra	MODERN SPECIES	4	pnkd (ENSAMXG00000043305)	tmbim1a (ENSAMXG00000029201)	ENSAMXG00000041875	mcm6 (ENSAMXG00000015786)	ENSAMXG00000015818	ENSAMXG00000004610	ENSAMXG00000038142	ical1 (ENSAMXG00000015858)	ENSAMXG00000015878	bmpr2a (ENSAMXG00000015904)	ENSAMXG00000036263	ENSAMXG00000015945	slc15a1b (ENSAMXG00000004462)	stk24b (ENSAMXG00000004494)	nr4a2b (ENSAMXG00000004517) #21	gpd2 (ENSAMXG00000004533) #22	ENSAMXG00000004540 #25	si:dkey-276j7.1 (ENSAMXG00000031861)	ENSAMXG00000034094 ##31	ENSAMXG00000004555 ##31	ENSAMXG00000036668	ENSAMXG00000032598	ENSAMXG00000004571 ##33	wdsub1 (ENSAMXG00000004598) #34	BAZ2B (ENSAMXG00000004622) #35	marchf7 (ENSAMXG00000004681) #36	FAM171B (ENSAMXG00000030999)	ENSAMXG00000038684	ENSAMXG00000038193	GULP1 (ENSAMXG00000029207)	ENSAMXG00000033238
Electric eel	MODERN SPECIES	307	TGDS (ENSEEEG00000022451)	GPR180 (ENSEEEG00000022456)	catip (ENSEEEG00000022457)	pnkd (ENSEEEG00000022459)	tmbim1a (ENSEEEG00000022460)	si:ch73-71c20.5 (ENSEEEG00000022461)	mcm6 (ENSEEEG00000022465)	cxcr4a (ENSEEEG00000022477)	ical1 (ENSEEEG00000022479)	ENSEEEG00000022481	bmpr2a (ENSEEEG00000022484)	ENSEEEG00000022496	slc15a1b (ENSEEEG00000022555)	stk24b (ENSEEEG00000022768)	nr4a2b (ENSEEEG00000022775) #21	gpd2 (ENSEEEG00000022777) #22	ENSEEEG00000022778	ENSEEEG00000000090 #25	si:dkey-276j7.1 (ENSEEEG00000000105)	ENSEEEG00000000169 ##31
Channel catfish	MODERN SPECIES	3	ENSIPUG00000021805	sphk1 (ENSIPUG00000021798)	tmbim1 (ENSIPUG00000021760)	si:ch73-71c20.5 (ENSIPUG00000021753)	MCM6 (ENSIPUG00000021719)	cxcr4-b (ENSIPUG00000021715)	ical1 (ENSIPUG00000021693)	FAM117B (ENSIPUG00000021685)	BMPR2 (ENSIPUG00000021655)	ENSIPUG00000021650	ENSIPUG00000021647	ENSIPUG00000021593	slc15a1b (ENSIPUG00000021568)	stk24b (ENSIPUG00000021537)	nr4a2b (ENSIPUG00000021533) #21	gpd2 (ENSIPUG00000021509) #22	c12h7orf57 (ENSIPUG00000021504)	ENSIPUG00000021495	acvr2a (ENSIPUG00000021470)	orc4 (ENSIPUG00000021451)	mbd5 (ENSIPUG00000021421)	kif5c (ENSIPUG00000021398)	lypd6 (ENSIPUG00000021390)	septin10 (ENSIPUG00000021380)	sowahcb (ENSIPUG00000021378)	ENSIPUG00000021375	ENSIPUG00000021371	mobl3 (ENSIPUG00000021355)	boll (ENSIPUG00000021346)	vps16 (ENSIPUG00000021315)	rgn (ENSIPUG00000021293)
Cyprinoidei	ANCESTRAL SPECIES	51	ENSGT00970000193449	ENSGT00940000154101.a	ENSGT00940000158887	ENSGT01050000244890.a.b.a.i.a	ENSGT00530000065055	ENSGT01050000244824.D.b.ib	ENSGT01050000244848.C.a.h	ENSGT00390000005530.a.a	ENSGT00950000183046.a.a.gb	ENSGT00940000156449.b.a	ENSGT00940000155972.A	ENSGT00940000155995.e.a	ENSGT00940000153476.b.o.b	ENSGT00940000157904.a.a	ENSGT00950000183038.a.b.b.b.r #21	ENSGT00390000001718.b #22	ENSGT00980000202863	ENSGT00390000014376.c.b	ENSGT00940000155773.a ##31	ENSGT00940000155655.A ##33	ENSGT00940000157230.b #34	ENSGT00940000155359.w.b #35	ENSGT00530000063836.a #36	ENSGT00950000183184.a.a.b	ENSGT00390000006826	ENSGT00940000159898	ENSGT00940000156186.l.a	ENSGT00940000168325	ENSGT00950000183140.a.a	ENSGT00940000155489.a	ENSGT00390000011514
Cyprininae	DUPLICATION
Cyprininae	ANCESTRAL SPECIES	23	ENSGT00940000166591.d	ENSGT00940000154101.a.a	ENSGT00940000158887.d	ENSGT01050000244890.a.b.a.i.a.a	ENSGT00530000065055.f	ENSGT01050000244824.D.b.ib.b	ENSGT01050000244848.C.a.h.d	ENSGT00390000005530.a.a.m	ENSGT00950000183046.a.a.gb.f	ENSGT00940000156449.b.a.h	ENSGT00940000155972.A.j	ENSGT00940000155995.e.a.a	ENSGT00940000153476.b.o.b.i	ENSGT00940000157904.a.a	ENSGT00950000183038.a.b.b.b.r.a #21	ENSGT00390000001718.b.c #22	ENSGT00980000202863.b	ENSGT00390000014376.c.b.a	ENSGT00940000155773.a.d ##31	ENSGT00940000155655.A.g ##33	ENSGT00940000157230.b.f #34	ENSGT00940000155359.w.b.db #35	ENSGT00530000063836.a.p #36	ENSGT00950000183184.a.a.b.a	ENSGT00940000165235.a.a	ENSGT00940000156186.l.a.a.a	ENSGT00940000168325.b	ENSGT00950000183140.a.a.a	ENSGT00940000155489.a.a	ENSGT00390000011514	ENSGT00730000110871.a.a.a.b.f
Cyprininae_a	ANCESTRAL SPECIES	30	ENSGT00940000164225.ab.a.b	ENSGT00940000166591.d	ENSGT00940000154101.a.a	ENSGT00940000158887.d	ENSGT01050000244890.a.b.a.i.a.a	ENSGT01050000244824.D.b.ib.b	ENSGT01050000244848.C.a.h.d	ENSGT00390000005530.a.a.m	ENSGT00950000183046.a.a.gb.f	ENSGT00940000156449.b.a.h	ENSGT00940000155972.A.j	ENSGT00940000155995.e.a.a	ENSGT00940000153476.b.o.b.i	ENSGT00940000157904.a.a	ENSGT00950000183038.a.b.b.b.r.a #21	ENSGT00390000001718.b.c #22	ENSGT00980000202863.b	ENSGT00390000014376.c.b.a	ENSGT00940000155773.a.d ##31	ENSGT00940000155655.A.g ##33	ENSGT00940000157230.b.f #34	ENSGT00940000155359.w.b.db #35	ENSGT00530000063836.a.p #36	ENSGT00950000183184.a.a.b.a	ENSGT00940000165235.a.a	ENSGT00940000156186.l.a.a.a	ENSGT00940000168325.b	ENSGT00950000183140.a.a.a	ENSGT00940000155489.a.a	ENSGT00390000011514	ENSGT00730000110871.a.a.a.b.f
Common carp reference	MODERN SPECIES	10	casp20 (ENSCCRG00000060659)	ENSCCRG00000073135	casp8 (ENSCCRG00000030596)	catip (ENSCCRG00000048030)	pnkd (ENSCCRG00000067782)	tmbim1a (ENSCCRG00000047987)	mcm6 (ENSCCRG00000047778)	cxcr4a (ENSCCRG00000047765)	ical1 (ENSCCRG00000024243)	ENSCCRG00000024236	bmpr2a (ENSCCRG00000024160)	ENSCCRG00000033291	slc15a1b (ENSCCRG00000039269)	stk24b (ENSCCRG00000052670)	nr4a2b (ENSCCRG00000000447) #21	gpd2 (ENSCCRG00000073527) #22	ENSCCRG00000030414	si:dkey-276j7.1 (ENSCCRG00000030409)	ENSCCRG00000030398 ##31	ENSCCRG00000017075 ##33	wdsub1 (ENSCCRG00000030234) #34	ENSCCRG00000064084 #35	MARCHF7 (ENSCCRG00000045932) #36	ENSCCRG00000026256	ENSCCRG00000027886	ENSCCRG00000023287	ENSCCRG00000055344	ENSCCRG00000016478	ENSCCRG00000000163	zgc:112416 (ENSCCRG00000016454)	pcnt (ENSCCRG00000015629)
Golden-line barbel	MODERN SPECIES	3522																gpd2 (ENSSGRG00000005556) #22
Goldfish	MODERN SPECIES	46	casp20 (ENSCARG00000050664)	ENSCARG00000050610	catip (ENSCARG00000050563)	pnkd (ENSCARG00000049840)	tmbim1a (ENSCARG00000049719)	si:ch73-71c20.5 (ENSCARG00000049704)	mcm6 (ENSCARG00000049591)	cxcr4a (ENSCARG00000049560)	ical1 (ENSCARG00000049350)	FAM117B (ENSCARG00000049305)	bmpr2a (ENSCARG00000046009)	ENSCARG00000027664	slc15a1b (ENSCARG00000026016)	stk24b (ENSCARG00000025872)	nr4a2b (ENSCARG00000025854) #21	gpd2 (ENSCARG00000025582) #22	ENSCARG00000025556	si:dkey-276j7.1 (ENSCARG00000025541)	ENSCARG00000024557 ##31	ENSCARG00000021653 ##33	wdsub1 (ENSCARG00000021539) #34	ENSCARG00000017322 #35	FAM171B (ENSCARG00000017096)	ENSCARG00000015756	GULP1 (ENSCARG00000015713)	ENSCARG00000015670 #36	ENSCARG00000015690	ENSCARG00000015660	ENSCARG00000015646	zgc:112416 (ENSCARG00000015634)	pcnt (ENSCARG00000015475)
Cyprininae	ANCESTRAL SPECIES	20	ENSGT00940000164225.ab.b.a	ENSGT00940000166591.c	ENSGT00940000154101.a.b	ENSGT00940000158887.c	ENSGT01050000244890.a.b.a.i.a.b	ENSGT00530000065055.e	ENSGT01050000244824.D.b.ib.a	ENSGT01050000244848.C.a.h.c	ENSGT00390000005530.a.a.n	ENSGT00950000183046.a.a.gb.e	ENSGT00940000156449.b.a.g	ENSGT00940000155972.A.i	ENSGT00940000155995.e.a.b	ENSGT00940000153476.b.o.b.j	ENSGT00950000183038.a.b.b.b.r.b #21	ENSGT00390000001718.b.d #22	ENSGT00980000202863.a	ENSGT00390000014376.c.b.b	ENSGT00940000155773.a.c ##31	ENSGT00940000155655.A.h ##33	ENSGT00940000157230.b.e #34	ENSGT00940000155359.w.b.eb #35	ENSGT00530000063836.a.o #36	ENSGT00950000183184.a.a.b.b	ENSGT00390000006826	ENSGT00940000159898.i	ENSGT00940000156186.l.a.a.b	ENSGT00940000168325.a	ENSGT00950000183140.a.a.b	ENSGT00940000155489.a.b	ENSGT00940000174917
Goldfish	MODERN SPECIES	24	ADAM23 (ENSCARG00000019471)	casp20 (ENSCARG00000020011)	casp8 (ENSCARG00000020017)	pnkd (ENSCARG00000020048)	tmbim1a (ENSCARG00000020309)	si:ch73-71c20.5 (ENSCARG00000020329)	mcm6 (ENSCARG00000020347)	cxcr4a (ENSCARG00000020702)	ical1 (ENSCARG00000020718)	FAM117B (ENSCARG00000020761)	bmpr2a (ENSCARG00000020801)	ENSCARG00000021667	slc15a1b (ENSCARG00000022333)	stk24b (ENSCARG00000022990)	nr4a2b (ENSCARG00000023363) #21	gpd2 (ENSCARG00000023414) #22	ENSCARG00000023589	si:dkey-276j7.1 (ENSCARG00000023596)	ENSCARG00000023732 ##31	ENSCARG00000026825 ##33	wdsub1 (ENSCARG00000029251) #34	ENSCARG00000029455 #35	MARCHF7 (ENSCARG00000035270) #36	FAM171B (ENSCARG00000035290)	zswim2 (ENSCARG00000035294)	CALCRL (ENSCARG00000035311)	GULP1 (ENSCARG00000035354)	ENSCARG00000035363	ENSCARG00000005837	ENSCARG00000005853	pcnt (ENSCARG00000005921)
Cyprininae_a	ANCESTRAL SPECIES	13	ENSGT00940000164225.ab.b.a	ENSGT00940000166591.c	ENSGT00940000154101.a.b	ENSGT00940000158887.c	ENSGT01050000244890.a.b.a.i.a.b	ENSGT00530000065055.e	ENSGT01050000244824.D.b.ib.a	ENSGT01050000244848.C.a.h.c	ENSGT00390000005530.a.a.n	ENSGT00950000183046.a.a.gb.e	ENSGT00940000156449.b.a.g	ENSGT00940000155972.A.i	ENSGT00940000155995.e.a.b	ENSGT00940000153476.b.o.b.j	ENSGT00950000183038.a.b.b.b.r.b #21	ENSGT00390000001718.b.d #22	ENSGT00980000202863.a	ENSGT00390000014376.c.b.b	ENSGT00940000155773.a.c ##31	ENSGT00940000155655.A.h ##33	ENSGT00940000157230.b.e #34	ENSGT00940000155359.w.b.eb #35	ENSGT00530000063836.a.o #36	ENSGT00950000183184.a.a.b.b	ENSGT00390000006826.a	ENSGT00940000159898.i	ENSGT00940000156186.l.a.a.b	ENSGT00940000168325.a	ENSGT00950000183140.a.a.b	ENSGT00940000155489.a.b	ENSGT00940000174917
Common carp reference	MODERN SPECIES	16	casp20 (ENSCCRG00000008807)	casp8 (ENSCCRG00000022248)	catip (ENSCCRG00000022255)	pnkd (ENSCCRG00000047996)	tmbim1a (ENSCCRG00000038219)	si:ch73-71c20.5 (ENSCCRG00000038228)	mcm6 (ENSCCRG00000038238)	cxcr4a (ENSCCRG00000054142)	ical1 (ENSCCRG00000037124)	ENSCCRG00000037179	bmpr2a (ENSCCRG00000037215)	ENSCCRG00000052617	slc15a1b (ENSCCRG00000052633)	stk24b (ENSCCRG00000066300)	nr4a2b (ENSCCRG00000020982) #21	gpd2 (ENSCCRG00000079452) #22	ENSCCRG00000060862	si:dkey-276j7.1 (ENSCCRG00000025745)	ENSCCRG00000025758 ##31	ENSCCRG00000045512 ##33	wdsub1 (ENSCCRG00000025177) #34	ENSCCRG00000026304 #35	MARCHF7 (ENSCCRG00000022917) #36	FAM171B (ENSCCRG00000022922)	zswim2 (ENSCCRG00000022927)	CALCRL (ENSCCRG00000005532)	GULP1 (ENSCCRG00000027127)	ENSCCRG00000076943	ENSCCRG00000008347	ENSCCRG00000016466	ENSCCRG00000000184
Golden-line barbel	MODERN SPECIES	62				ENSSGRG00000017687	catip (ENSSGRG00000017688)	pnkd (ENSSGRG00000017690)	tmbim1a (ENSSGRG00000017836)	si:ch73-71c20.5 (ENSSGRG00000017837)	mcm6 (ENSSGRG00000017838)	cxcr4a (ENSSGRG00000017860)	FAM117B (ENSSGRG00000017863)	bmpr2a (ENSSGRG00000017865)	ENSSGRG00000017986	stk24b (ENSSGRG00000025642)	nr4a2b (ENSSGRG00000025677) #21	gpd2 (ENSSGRG00000025685) #22	ENSSGRG00000025891 ##31	ENSSGRG00000025896	ENSSGRG00000025918 ##33	wdsub1 (ENSSGRG00000026505) #34	ENSSGRG00000026512 #35	MARCHF7 (ENSSGRG00000026608) #36	FAM171B (ENSSGRG00000026611)	zswim2 (ENSSGRG00000026614)	CALCRL (ENSSGRG00000026622)	ENSSGRG00000027498	ENSSGRG00000027499	ENSSGRG00000027502	pcnt (ENSSGRG00000027504)	ATG9A (ENSSGRG00000027509)	ENSSGRG00000027515
Zebrafish	MODERN SPECIES	21	L3HYPDH (ENSDARG00000103763)	casp8 (ENSDARG00000058325)	catip (ENSDARG00000063009)	pnkd (ENSDARG00000071032)	tmbim1a (ENSDARG00000058323)	si:ch73-71c20.5 (ENSDARG00000097696)	mcm6 (ENSDARG00000057683)	cxcr4a (ENSDARG00000057633)	ical1 (ENSDARG00000057688)	FAM117B (ENSDARG00000074921)	bmpr2a (ENSDARG00000011941)	ENSDARG00000016311	slc15a1b (ENSDARG00000044528)	stk24b (ENSDARG00000023878)	nr4a2b (ENSDARG00000044532) #21	gpd2 (ENSDARG00000062430) #22	ENSDARG00000097317	ENSDARG00000097743	si:dkey-276j7.1 (ENSDARG00000090872)	ENSDARG00000045331 ##31	ENSDARG00000077073 ##33	wdsub1 (ENSDARG00000090418) #34	BAZ2B (ENSDARG00000057782) #35	marchf7 (ENSDARG00000057772) #36	FAM171B (ENSDARG00000096271)	ENSDARG00000096375 #36	zswim2 (ENSDARG00000075700)	ENSDARG00000096384	CALCRL (ENSDARG00000011571)	GULP1 (ENSDARG00000057833)	ENSDARG00000024847
Clupeiformes	ANCESTRAL SPECIES	440							ENSGT01050000244848.C.a.h	ENSGT00390000005530.a.a	ENSGT00950000183046.a.a.gb	ENSGT00940000156449.b.a	ENSGT00940000155972.A	ENSGT00940000155995.e.a	ENSGT00940000153476.b.o.b	ENSGT00940000157904.a.a	ENSGT00950000183038.a.b.b.b.r #21	ENSGT00390000001718.b #22
Atlantic herring	MODERN SPECIES	7	kiaa0930 (ENSCHAG00000003054)	MFAP4 (ENSCHAG00000003636)	fbxo7 (ENSCHAG00000003651)	rtcb (ENSCHAG00000003684)	xpot (ENSCHAG00000003782)	rpl18a (ENSCHAG00000004152)	ENSCHAG00000004245	cxcr4a (ENSCHAG00000004341)	ical1 (ENSCHAG00000004377)	ENSCHAG00000004579	bmpr2a (ENSCHAG00000004641)	ENSCHAG00000005504	slc15a1b (ENSCHAG00000011257)	ENSCHAG00000011604	nr4a2b (ENSCHAG00000011794) #21	gpd2 (ENSCHAG00000011812) #22	ENSCHAG00000012171	optn (ENSCHAG00000012181)	ccdc3a (ENSCHAG00000012193)	camk1da (ENSCHAG00000012217)	cdc123 (ENSCHAG00000012817)	ENSCHAG00000012859	TIMM22 (ENSCHAG00000012880)	ENSCHAG00000012890	myf6 (ENSCHAG00000012902)	myf5 (ENSCHAG00000012907)	lin7a (ENSCHAG00000012925)	ACSS3 (ENSCHAG00000012966)	ENSCHAG00000013958	ENSCHAG00000013985	ppfia2 (ENSCHAG00000014083)
Spotted gar	MODERN SPECIES	650	fev (ENSLOCG00000005405)	cryba2b (ENSLOCG00000005419)	umps (ENSLOCG00000005441)	KALRN (ENSLOCG00000005462)	ROPN1 (ENSLOCG00000005497)	CCDC14 (ENSLOCG00000005512)	ENSLOCG00000005529	MYLK (ENSLOCG00000005547)	FMNL2 (ENSLOCG00000005582) #15	prpf40a (ENSLOCG00000005629) #16	arl6ip6 (ENSLOCG00000005665) #17	rprmb (ENSLOCG00000017828) #18	GALNT13 (ENSLOCG00000005678) #19	KCNJ3 (ENSLOCG00000005729) #20	nr4a2b (ENSLOCG00000005738) #21	gpd2 (ENSLOCG00000005757) #22	GALNT5 (ENSLOCG00000005773) #23	ENSLOCG00000005793	CYTIP (ENSLOCG00000005812) #25	ACVR1C (ENSLOCG00000005848) #26	ACVR1 (ENSLOCG00000005862) #27	ENSLOCG00000005876	upp2 (ENSLOCG00000005911) #28	CCDC148 (ENSLOCG00000005892) #29	PKP4 (ENSLOCG00000005927) #31	TANC1 (ENSLOCG00000005973) #33	wdsub1 (ENSLOCG00000006001) #34	BAZ2B (ENSLOCG00000006024) #35	marchf7 (ENSLOCG00000006058) #36	calcrla (ENSLOCG00000006075)	tfpia (ENSLOCG00000006095)
Reedfish	MODERN SPECIES	16	WNT6 (ENSECRG00000008294)	wnt10a (ENSECRG00000008189)	cdk5r2b (ENSECRG00000008168)	CCDC14 (ENSECRG00000008148)	ENSECRG00000008134	MYLK (ENSECRG00000008099)	FMNL2 (ENSECRG00000008021) #15	prpf40a (ENSECRG00000007964) #16	ARL6IP6 (ENSECRG00000007949) #17	rprmb (ENSECRG00000007943) #18	ENSECRG00000007932	GALNT13 (ENSECRG00000007899) #19	KCNJ3 (ENSECRG00000007874) #20	ENSECRG00000007867 ##20	nr4a2b (ENSECRG00000007851) #21	gpd2 (ENSECRG00000007817) #22	GALNT5 (ENSECRG00000007795) #23	CYTIP (ENSECRG00000007777) #25	ACVR1C (ENSECRG00000007509) #26	ACVR1 (ENSECRG00000007343) #27	upp2 (ENSECRG00000007312) #28	ENSECRG00000007302	CCDC148 (ENSECRG00000007250) #29	PKP4 (ENSECRG00000007201) #31	DAPL1 (ENSECRG00000007186) #32	ENSECRG00000007176	TANC1 (ENSECRG00000007155) #33	wdsub1 (ENSECRG00000007138) #34	BAZ2B (ENSECRG00000007060) #35	marchf7 (ENSECRG00000007015) #36	CD302 (ENSECRG00000007006) #37
Elephant shark	MODERN SPECIES	1499	cybrd1 (ENSCMIG00000010505)	umps (ENSCMIG00000010503)	KALRN (ENSCMIG00000010379)	ENSCMIG00000010265	CCDC14 (ENSCMIG00000010263)	ENSCMIG00000010256	MYLK (ENSCMIG00000010160)	FMNL2 (ENSCMIG00000009911) #15	prpf40a (ENSCMIG00000009678) #16	ENSCMIG00000009634 #17	rprmb (ENSCMIG00000009633) #18	ENSCMIG00000009628	GALNT13 (ENSCMIG00000009537) #19	KCNJ3 (ENSCMIG00000009502) #20	nr4a2b (ENSCMIG00000009485) #21	gpd2 (ENSCMIG00000009321) #22	ENSCMIG00000009259 #23	ENSCMIG00000009256	CYTIP (ENSCMIG00000009253) #25	ENSCMIG00000009178	ACVR1 (ENSCMIG00000009127) #27	upp2 (ENSCMIG00000009118) #28	ENSCMIG00000009111 #29	PKP4 (ENSCMIG00000009043) #31	ENSCMIG00000009016 #32	znf148 (ENSCMIG00000009013)	slc12a8 (ENSCMIG00000009009)	ENSCMIG00000009006	ENSCMIG00000009000	ENSCMIG00000008993	itgb5 (ENSCMIG00000008931)
Cyclostomata	ANCESTRAL SPECIES																	ENSGT00390000001718 #22
Lamprey	MODERN SPECIES	106														ENSPMAG00000000920	glra2 (ENSPMAG00000000926)	gpd2 (ENSPMAG00000000939) #22	ENSPMAG00000000958	ENSPMAG00000000962	TAMALIN (ENSPMAG00000000968) #25	ENSPMAG00000000979	ENSPMAG00000000982	KCNJ3 (ENSPMAG00000000984) #20	NAP1L4 (ENSPMAG00000000985)	phlda2 (ENSPMAG00000001033)
Hagfish	MODERN SPECIES	364	ENSEBUG00000007431	ENSEBUG00000009813	napab (ENSEBUG00000014426)	ENSEBUG00000004858	ENSEBUG00000014292	ENSEBUG00000001118	crnkl1 (ENSEBUG00000013461)	ENSEBUG00000014662	ENSEBUG00000010552	ENSEBUG00000008368	ENSEBUG00000013890	ENSEBUG00000014517	ENSEBUG00000005039	ENSEBUG00000006084 ##21	ENSEBUG00000002387 ##21	gpd2 (ENSEBUG00000010512) #22	ENSEBUG00000009028	ENSEBUG00000002899	ENSEBUG00000011923
Ciona	ANCESTRAL SPECIES	1364															ENSGT00390000004859	ENSGT00390000001718 #22
Ciona savignyi	DUPLICATION
Ciona savignyi	MODERN SPECIES	294	ENSCSAVG00000005589	ENSCSAVG00000005593	ENSCSAVG00000005617	ENSCSAVG00000005755	ENSCSAVG00000005856	ENSCSAVG00000005887	ENSCSAVG00000005889	ENSCSAVG00000005891	ENSCSAVG00000005966	ENSCSAVG00000006096	ENSCSAVG00000006099	ENSCSAVG00000006103	ENSCSAVG00000006108	ENSCSAVG00000006111	ENSCSAVG00000006114 #22	ENSCSAVG00000006123 #22	ENSCSAVG00000006131	ENSCSAVG00000006135	ENSCSAVG00000006138	ENSCSAVG00000006141	ENSCSAVG00000006223	ENSCSAVG00000006353	ENSCSAVG00000006389	ENSCSAVG00000006391	ENSCSAVG00000006481	ENSCSAVG00000006482	ENSCSAVG00000006484	ENSCSAVG00000006485	ENSCSAVG00000006490	ENSCSAVG00000006492	ENSCSAVG00000006563
Ciona savignyi	MODERN SPECIES	294	ENSCSAVG00000005587	ENSCSAVG00000005589	ENSCSAVG00000005593	ENSCSAVG00000005617	ENSCSAVG00000005755	ENSCSAVG00000005856	ENSCSAVG00000005887	ENSCSAVG00000005889	ENSCSAVG00000005891	ENSCSAVG00000005966	ENSCSAVG00000006096	ENSCSAVG00000006099	ENSCSAVG00000006103	ENSCSAVG00000006108	ENSCSAVG00000006111	ENSCSAVG00000006114 #22	ENSCSAVG00000006123 #22	ENSCSAVG00000006131	ENSCSAVG00000006135	ENSCSAVG00000006138	ENSCSAVG00000006141	ENSCSAVG00000006223	ENSCSAVG00000006353	ENSCSAVG00000006389	ENSCSAVG00000006391	ENSCSAVG00000006481	ENSCSAVG00000006482	ENSCSAVG00000006484	ENSCSAVG00000006485	ENSCSAVG00000006490	ENSCSAVG00000006492
Ciona intestinalis	MODERN SPECIES	4	ENSCING00000010002	ENSCING00000014578	ENSCING00000014581	ENSCING00000018752	ENSCING00000014579	ENSCING00000018353	ENSCING00000001424	ENSCING00000014594	ENSCING00000023227	ENSCING00000019007	ENSCING00000022025	ENSCING00000025161	ENSCING00000020509	ENSCING00000007366	ENSCING00000020414	ENSCING00000001400 #22	ENSCING00000021164	ENSCING00000014597	ENSCING00000010542	ENSCING00000019958	ENSCING00000021282	ENSCING00000001394	ENSCING00000018159	ENSCING00000017308	ENSCING00000001386	not3 (ENSCING00000001384)	ENSCING00000002448	ENSCING00000020327	ENSCING00000002467	ENSCING00000018110	ENSCING00000014612
Ecdysozoa	DUPLICATION
Ecdysozoa	ANCESTRAL SPECIES																	ENSGT00390000001718.o #22
Caenorhabditis elegans	MODERN SPECIES	5	gcy-14 (WBGene00001540)	npr-13 (WBGene00013883)	ret-1 (WBGene00004336)	nspa-8 (WBGene00012294)	W06A7.4 (WBGene00012293)	W06A7.2 (WBGene00012291)	rin-1 (WBGene00008183)	Y50E8A.12 (WBGene00013055)	Y50E8A.11 (WBGene00013054)	Y50E8A.10 (WBGene00013053)	scrm-7 (WBGene00013052)	haf-7 (WBGene00001817)	nspa-10 (WBGene00044275)	Y50E8A.22 (WBGene00304930)	lipl-8 (WBGene00013050)	Y50E8A.6 (WBGene00013049) #22	Y50E8A.5 (WBGene00013048)	unc-61 (WBGene00006795)	oig-3 (WBGene00003861)	Y50E8A.2 (WBGene00013047)	Y50E8A.1 (WBGene00013046)	R08A2.7 (WBGene00011137)	R08A2.1 (WBGene00011132)	fbxa-147 (WBGene00011135)	R08A2.2 (WBGene00011133)	R08A2.5 (WBGene00011136)	ssp-33 (WBGene00011134)	R08A2.9 (WBGene00219318)	set-5 (WBGene00008145)	unc-112 (WBGene00006836)	gasr-8 (WBGene00008144)
Fruitfly	MODERN SPECIES	16	CG33640 (FBgn0053640)	CG33641 (FBgn0053641)	CG33642 (FBgn0053642)	CG33643 (FBgn0053643)	CG33644 (FBgn0053644)	CG33645 (FBgn0053645)	CG15638 (FBgn0028943)	CG16852 (FBgn0028942)	CG9263 (FBgn0032530)	CG16853 (FBgn0028941)	kuz (FBgn0259984)	CG9254 (FBgn0028513)	ics (FBgn0028546)	CG18507 (FBgn0028527)	DIP-kappa (FBgn0051814)	Gpo3 (FBgn0028848) #22	CG9014 (FBgn0028847)	nur (FBgn0051813)	TM9SF4 (FBgn0028541)	CG43376 (FBgn0263206)	CG9008 (FBgn0028540)	p38b (FBgn0024846)	CG16890 (FBgn0028932)	Eato (FBgn0028539)	CG16863 (FBgn0028931)	Sec71 (FBgn0028538)	CAH1 (FBgn0027844)	Adat1 (FBgn0028658)	CG16865 (FBgn0028919)	CG16888 (FBgn0032533)	Sos (FBgn0001965)
Ecdysozoa	ANCESTRAL SPECIES																	ENSGT00390000001718.p #22
Caenorhabditis elegans	MODERN SPECIES		T28F4.8 (WBGene00271567)	T28F4.5 (WBGene00012140) #32	pbrm-1 (WBGene00007042)	C26C6.8 (WBGene00007742)	C26C6.6 (WBGene00007740)	glb-8 (WBGene00007741)	C26C6.10 (WBGene00077553)	C26C6.9 (WBGene00007743)	goa-1 (WBGene00001648)	nas-36 (WBGene00003552)	C26C6.4 (WBGene00007739)	dcp-66 (WBGene00000938)	T25G3.1 (WBGene00012029)	chs-1 (WBGene00000496)	T25G3.3 (WBGene00012030)	gpdh-3 (WBGene00012031) #22	mans-1 (WBGene00008411)	D2030.2 (WBGene00008412)	D2030.3 (WBGene00008413)	D2030.4 (WBGene00008414)	mce-1 (WBGene00008415)	D2030.12 (WBGene00008421)	prg-1 (WBGene00004178)	D2030.7 (WBGene00008417)	D2030.11 (WBGene00008420)	D2030.8 (WBGene00008418)	wdr-23 (WBGene00008419)	aex-1 (WBGene00000084)	lrp-1 (WBGene00003071)	capg-1 (WBGene00009254)	F26A3.1 (WBGene00009140)
Fruitfly	DUPLICATION
Fruitfly	MODERN SPECIES	17	CG8320 (FBgn0034059)	Pex11ab (FBgn0034058)	CG8314 (FBgn0034057)	CG8366 (FBgn0034054)	Strn-Mlck (FBgn0265045)	COX6AL (FBgn0050093)	Cyp4aa1 (FBgn0034053)	CG8299 (FBgn0034052)	Mlf (FBgn0034051)	bug (FBgn0034050)	Diap2 (FBgn0015247)	bdg (FBgn0034049)	CG33463 (FBgn0053463)	sli (FBgn0264089)	Rif1 (FBgn0050085) #10	Gpo1 (FBgn0022160) #22	cGlr1 (FBgn0034047)	CG8249 (FBgn0034045)	Poxn (FBgn0003130)	CG33465 (FBgn0053465)	tun (FBgn0034046)	Zasp52 (FBgn0265991)	CG30089 (FBgn0050089)	CG30083 (FBgn0050083)	CG30080 (FBgn0050080)	CG46433 (FBgn0286939)	CG42662 (FBgn0261538)	CG33462 (FBgn0053462)	CG33461 (FBgn0053461)	CG33460 (FBgn0053460)	CG30087 (FBgn0050087)
Fruitfly	MODERN SPECIES	17	p47 (FBgn0033179)	Aldh-III (FBgn0010548)	wech (FBgn0259745)	Coop (FBgn0263240)	CG1620 (FBgn0033183)	dpa (FBgn0015929)	didum (FBgn0261397)	mEFTu2 (FBgn0033184)	az2 (FBgn0025185)	CG1603 (FBgn0033185)	CG1602 (FBgn0033186)	PIG-G (FBgn0033187)	Orc1 (FBgn0286788)	Drat (FBgn0033188)	Cyt-b5 (FBgn0264294)	Gpo2 (FBgn0033190) #22	CG1598 (FBgn0033191)	Corin (FBgn0033192)	Rpe (FBgn0050499)	boca (FBgn0004132)	Vps13 (FBgn0033194)	blow (FBgn0004133)	CG1360 (FBgn0033195)	scra (FBgn0261385)	CG1358 (FBgn0033196)	M7BP (FBgn0263077)	CG43341 (FBgn0263046)	CG17985 (FBgn0033199)	Rpt1 (FBgn0028687)	CG30491 (FBgn0050491)	CG30495 (FBgn0050495)
Yeast	MODERN SPECIES	4	YIL141W	CCT2 (YIL142W)	YIL142C-A	SSL2 (YIL143C)	YIL144W	PAN6 (YIL145C)	ATG32 (YIL146C)	SLN1 (YIL147C)	RPL40A (YIL148W)	MLP2 (YIL149C)	MCM10 (YIL150C)	ESL1 (YIL151C)	YIL152W	RRD1 (YIL153W)	YIL154C	GUT2 (YIL155C) #22	UBP7 (YIL156W)	YIL156W-B	YIL156W-A	COA1 (YIL157C)	AIM20 (YIL158W)	BNR1 (YIL159W)	POT1 (YIL160C)	YIL161W	SUC2 (YIL162W)	YIL163C	NIT1 (YIL164C)	YIL165C	YIL166C	YIL169C	YIL171W-A