Euteleostomi DUPLICATION Euteleostomi ANCESTRAL SPECIES 60 ENSGT00940000158884 ENSGT00940000156516 ENSGT00940000160018 ENSGT00390000002575 ENSGT00940000153654 ENSGT00940000159978 ENSGT00550000074798.a.a ENSGT00940000158664 ENSGT00950000182843.a.b ENSGT00390000008325.a ENSGT00550000074856 ENSGT00950000183166.a.b ENSGT00940000154816.a.b #18 ENSGT00390000018606 #19 ENSGT00940000158832 #20 ENSGT00940000155317.b #23 ENSGT00940000157027 #24 ENSGT00390000012733 #25 ENSGT00390000015977 #26 ENSGT00530000063723.a #28 ENSGT00900000141073 ENSGT00980000199539 #29 ENSGT00940000154389.b #30 ENSGT00940000158044.a #31 ENSGT00390000004796 ENSGT00390000016767 #32 ENSGT00950000183078.b.b #33 ENSGT00400000022306 #34 ENSGT00940000160709 #35 ENSGT00940000156599 #37 Sarcopterygii ANCESTRAL SPECIES 63 ENSGT00940000153189.A #9 ENSGT00910000148339 ENSGT00940000163190 ENSGT00550000074919 #10 ENSGT00390000010239 #11 ENSGT00390000002511 #12 ENSGT00390000002408 #13 ENSGT00390000009662 #14 ENSGT00940000161769 #15 ENSGT00940000164668 #16 ENSGT00940000159913 ENSGT00530000064244.b #17 ENSGT00940000154816.a.b #18 ENSGT00390000018606 #19 ENSGT00940000158832 #20 ENSGT00940000155317.b #23 ENSGT00940000157027 #24 ENSGT00390000012733 #25 ENSGT00390000015977 #26 ENSGT00530000063723.a #28 ENSGT00900000141073 ENSGT00980000199539 #29 ENSGT00940000154389.b #30 ENSGT00940000158044.a #31 ENSGT00390000004796 ENSGT00390000016767 #32 ENSGT00950000183078.b.b #33 ENSGT00400000022306 #34 ENSGT00940000160709 #35 ENSGT00940000156599 #37 Tetrapoda ANCESTRAL SPECIES 10 ENSGT00940000156771 #7 ENSGT00940000161453 #8 ENSGT00940000153189.A #9 ENSGT00550000074919 #10 ENSGT00390000010239 #11 ENSGT00390000002511 #12 ENSGT00390000002408 #13 ENSGT00390000009662 #14 ENSGT00940000161769 #15 ENSGT00940000164668 #16 ENSGT00940000159913 ENSGT00530000064244.b #17 ENSGT00940000154816.a.b #18 ENSGT00390000018606 #19 ENSGT00940000158832 #20 ENSGT00940000155317.b #23 ENSGT00940000157027 #24 ENSGT00390000012733 #25 ENSGT00390000015977 #26 ENSGT00530000063723.a #28 ENSGT00900000141073 ENSGT00980000199539 #29 ENSGT00940000154389.b #30 ENSGT00940000158044.a #31 ENSGT00390000004796 ENSGT00390000016767 #32 ENSGT00950000183078.b.b #33 ENSGT00400000022306 #34 ENSGT00940000160709 #35 ENSGT00940000156599 #37 ENSGT00390000016776 Anura DUPLICATION Anura DUPLICATION Anura ANCESTRAL SPECIES ENSGT00940000155317.b.a.b #22 Frog MODERN SPECIES mapk1 (ENSXETG00000018576) #7 ypel1 (ENSXETG00000024940) #8 ppil2 (ENSXETG00000018594) #9 hira (ENSXETG00000018598) #10 mrpl40 (ENSXETG00000018600) #11 c22orf39 (ENSXETG00000036919) #12 ufd1 (ENSXETG00000018601) #13 cdc45 (ENSXETG00000018602) #14 cldn5 (ENSXETG00000047956) #15 septin5 (ENSXETG00000030888) #16 gp1bb (ENSXETG00000034628) #17 tbx1 (ENSXETG00000039391) #18 gnb1l (ENSXETG00000006305) #19 txnrd2 (ENSXETG00000006307) #20 comt (ENSXETG00000006315) #21 comt.2 (ENSXETG00000024946) #22 ENSXETG00000033321 #23 arvcf (ENSXETG00000006316) #24 tango2 (ENSXETG00000006319) #25 dgcr8 (ENSXETG00000006320) #26 ENSXETG00000041542 #27 trmt2a (ENSXETG00000006323) #28 ENSXETG00000040329 #29 ranbp1 (ENSXETG00000034836) #30 pgam5 (ENSXETG00000023845) #31 ankle2 (ENSXETG00000023848) #32 golga3 (ENSXETG00000023849) #33 chfr (ENSXETG00000024212) #34 fbrsl1 (ENSXETG00000023851) #35 ENSXETG00000044446 #36 galnt9 (ENSXETG00000002044) #37 Anura ANCESTRAL SPECIES 4 ENSGT00940000161453 #8 ENSGT00940000153189.A #9 ENSGT00550000074919 #10 ENSGT00390000010239 #11 ENSGT00390000002511 #12 ENSGT00390000002408 #13 ENSGT00390000009662 #14 ENSGT00940000161769 #15 ENSGT00940000164668 #16 ENSGT00940000159913 ENSGT00530000064244.b #17 ENSGT00940000154816.a.b #18 ENSGT00390000018606 #19 ENSGT00940000158832 #20 ENSGT00940000155317.b.b #21 ENSGT00940000155317.b.a.a #23 ENSGT00940000157027 #24 ENSGT00390000012733 #25 ENSGT00390000015977 #26 ENSGT00530000063723.a #28 ENSGT00980000199539 #29 ENSGT00940000154389.b #30 ENSGT00940000158044.a #31 ENSGT00390000004796 ENSGT00390000016767 #32 ENSGT00950000183078.b.b #33 ENSGT00400000022306 #34 ENSGT00940000160709 #35 ENSGT00940000156599 #37 ENSGT00390000016776 ENSGT00940000154764.m Leishan spiny toad DUPLICATION Leishan spiny toad MODERN SPECIES ENSLLEG00000007374 ENSLLEG00000006878 #16 SEPTIN5 (ENSLLEG00000006544) GP1BB (ENSLLEG00000006477) #17 ENSLLEG00000006469 ENSLLEG00000006448 TBX1 (ENSLLEG00000006268) #18 ENSLLEG00000006246 ENSLLEG00000006233 GNB1L (ENSLLEG00000006175) #19 TXNRD2 (ENSLLEG00000006086) #20 ENSLLEG00000006036 #21 ENSLLEG00000006012 ENSLLEG00000005976 #23 ENSLLEG00000005960 ENSLLEG00000005884 #23 ENSLLEG00000005861 ENSLLEG00000005845 ARVCF (ENSLLEG00000005551) #24 ENSLLEG00000005495 ##27 TANGO2 (ENSLLEG00000005398) #25 DGCR8 (ENSLLEG00000005288) #26 TRMT2A (ENSLLEG00000005242) #28 ENSLLEG00000005218 #30 ENSLLEG00000005203 ZDHHC8 (ENSLLEG00000005179) #31 ENSLLEG00000005055 PGAM5 (ENSLLEG00000005003) ANKLE2 (ENSLLEG00000004948) #32 GOLGA3 (ENSLLEG00000004881) #33 CHFR (ENSLLEG00000004811) #34 Leishan spiny toad MODERN SPECIES CLDN5 (ENSLLEG00000007411) #15 ENSLLEG00000007380 ENSLLEG00000007374 ENSLLEG00000006878 #16 SEPTIN5 (ENSLLEG00000006544) GP1BB (ENSLLEG00000006477) #17 ENSLLEG00000006469 ENSLLEG00000006448 TBX1 (ENSLLEG00000006268) #18 ENSLLEG00000006246 ENSLLEG00000006233 GNB1L (ENSLLEG00000006175) #19 TXNRD2 (ENSLLEG00000006086) #20 ENSLLEG00000006036 #21 ENSLLEG00000006012 ENSLLEG00000005976 #23 ENSLLEG00000005960 ENSLLEG00000005884 #23 ENSLLEG00000005861 ENSLLEG00000005845 ARVCF (ENSLLEG00000005551) #24 ENSLLEG00000005495 ##27 TANGO2 (ENSLLEG00000005398) #25 DGCR8 (ENSLLEG00000005288) #26 TRMT2A (ENSLLEG00000005242) #28 ENSLLEG00000005218 #30 ENSLLEG00000005203 ZDHHC8 (ENSLLEG00000005179) #31 ENSLLEG00000005055 PGAM5 (ENSLLEG00000005003) ANKLE2 (ENSLLEG00000004948) #32 Frog MODERN SPECIES ypel1 (ENSXETG00000024940) #8 ppil2 (ENSXETG00000018594) #9 hira (ENSXETG00000018598) #10 mrpl40 (ENSXETG00000018600) #11 c22orf39 (ENSXETG00000036919) #12 ufd1 (ENSXETG00000018601) #13 cdc45 (ENSXETG00000018602) #14 cldn5 (ENSXETG00000047956) #15 septin5 (ENSXETG00000030888) #16 gp1bb (ENSXETG00000034628) #17 tbx1 (ENSXETG00000039391) #18 gnb1l (ENSXETG00000006305) #19 txnrd2 (ENSXETG00000006307) #20 comt (ENSXETG00000006315) #21 comt.2 (ENSXETG00000024946) #22 ENSXETG00000033321 #23 arvcf (ENSXETG00000006316) #24 tango2 (ENSXETG00000006319) #25 dgcr8 (ENSXETG00000006320) #26 ENSXETG00000041542 #27 trmt2a (ENSXETG00000006323) #28 ENSXETG00000040329 #29 ranbp1 (ENSXETG00000034836) #30 pgam5 (ENSXETG00000023845) #31 ankle2 (ENSXETG00000023848) #32 golga3 (ENSXETG00000023849) #33 chfr (ENSXETG00000024212) #34 fbrsl1 (ENSXETG00000023851) #35 ENSXETG00000044446 #36 galnt9 (ENSXETG00000002044) #37 noc4l (ENSXETG00000002043) Anura ANCESTRAL SPECIES 4 ENSGT00940000156771 #7 ENSGT00940000161453 #8 ENSGT00940000153189.A #9 ENSGT00550000074919 #10 ENSGT00390000010239 #11 ENSGT00390000002511 #12 ENSGT00390000002408 #13 ENSGT00390000009662 #14 ENSGT00940000161769 #15 ENSGT00940000164668 #16 ENSGT00940000159913 ENSGT00530000064244.b #17 ENSGT00940000154816.a.b #18 ENSGT00390000018606 #19 ENSGT00940000158832 #20 ENSGT00940000155317.b.b #21 ENSGT00940000155317.b.a.a #23 ENSGT00940000157027 #24 ENSGT00390000012733 #25 ENSGT00390000015977 #26 ENSGT00530000063723.a #28 ENSGT00980000199539 #29 ENSGT00940000154389.b #30 ENSGT00940000158044.a #31 ENSGT00390000004796 ENSGT00390000016767 #32 ENSGT00950000183078.b.b #33 ENSGT00400000022306 #34 ENSGT00940000160709 #35 ENSGT00940000156599 #37 ENSGT00390000016776 Frog MODERN SPECIES ppm1f (ENSXETG00000018572) mapk1 (ENSXETG00000018576) #7 ypel1 (ENSXETG00000024940) #8 ppil2 (ENSXETG00000018594) #9 hira (ENSXETG00000018598) #10 mrpl40 (ENSXETG00000018600) #11 c22orf39 (ENSXETG00000036919) #12 ufd1 (ENSXETG00000018601) #13 cdc45 (ENSXETG00000018602) #14 cldn5 (ENSXETG00000047956) #15 septin5 (ENSXETG00000030888) #16 gp1bb (ENSXETG00000034628) #17 tbx1 (ENSXETG00000039391) #18 gnb1l (ENSXETG00000006305) #19 txnrd2 (ENSXETG00000006307) #20 comt (ENSXETG00000006315) #21 comt.2 (ENSXETG00000024946) #22 ENSXETG00000033321 #23 arvcf (ENSXETG00000006316) #24 tango2 (ENSXETG00000006319) #25 dgcr8 (ENSXETG00000006320) #26 ENSXETG00000041542 #27 trmt2a (ENSXETG00000006323) #28 ENSXETG00000040329 #29 ranbp1 (ENSXETG00000034836) #30 pgam5 (ENSXETG00000023845) #31 ankle2 (ENSXETG00000023848) #32 golga3 (ENSXETG00000023849) #33 chfr (ENSXETG00000024212) #34 fbrsl1 (ENSXETG00000023851) #35 ENSXETG00000044446 #36 Leishan spiny toad MODERN SPECIES CDC45 (ENSLLEG00000007462) #14 ENSLLEG00000007427 CLDN5 (ENSLLEG00000007411) #15 ENSLLEG00000007380 ENSLLEG00000007374 ENSLLEG00000006878 #16 SEPTIN5 (ENSLLEG00000006544) GP1BB (ENSLLEG00000006477) #17 ENSLLEG00000006469 ENSLLEG00000006448 TBX1 (ENSLLEG00000006268) #18 ENSLLEG00000006246 ENSLLEG00000006233 GNB1L (ENSLLEG00000006175) #19 TXNRD2 (ENSLLEG00000006086) #20 ENSLLEG00000006036 #21 ENSLLEG00000006012 ENSLLEG00000005976 #23 ENSLLEG00000005960 ENSLLEG00000005884 #23 ENSLLEG00000005861 ENSLLEG00000005845 ARVCF (ENSLLEG00000005551) #24 ENSLLEG00000005495 ##27 TANGO2 (ENSLLEG00000005398) #25 DGCR8 (ENSLLEG00000005288) #26 TRMT2A (ENSLLEG00000005242) #28 ENSLLEG00000005218 #30 ENSLLEG00000005203 ZDHHC8 (ENSLLEG00000005179) #31 ENSLLEG00000005055 Amniota ANCESTRAL SPECIES 16 ENSGT00940000156771 #7 ENSGT00940000161453 #8 ENSGT00940000153189.A #9 ENSGT00550000074919 #10 ENSGT00390000010239 #11 ENSGT00390000002511 #12 ENSGT00390000002408 #13 ENSGT00390000009662 #14 ENSGT00940000161769 #15 ENSGT00940000164668 #16 ENSGT00940000159913 ENSGT00530000064244.b #17 ENSGT00940000154816.a.b #18 ENSGT00390000018606 #19 ENSGT00940000158832 #20 ENSGT00940000155317.b #23 ENSGT00940000157027 #24 ENSGT00390000012733 #25 ENSGT00390000015977 #26 ENSGT00970000193655 ENSGT00530000063723.a #28 ENSGT00900000141073 ENSGT00940000158044.a #31 ENSGT00390000004796 ENSGT00390000016767 #32 ENSGT00950000183078.b.b #33 ENSGT00400000022306 #34 ENSGT00940000160709 #35 ENSGT00940000156599 #37 ENSGT00390000016776 ENSGT00940000154764 Mammalia ANCESTRAL SPECIES 81 ENSGT00940000156771 #7 ENSGT00940000161453 #8 ENSGT00940000153189.A #9 ENSGT00550000074919 #10 ENSGT00390000010239 #11 ENSGT00390000002511 #12 ENSGT00390000002408 #13 ENSGT00390000009662 #14 ENSGT00940000161769 #15 ENSGT00940000164668 #16 ENSGT00940000159913 ENSGT00530000064244.b #17 ENSGT00940000154816.a.b #18 ENSGT00390000018606 #19 ENSGT00940000158832 #20 ENSGT00940000155317.b #23 ENSGT00940000157027 #24 ENSGT00390000012733 #25 ENSGT00390000015977 #26 ENSGT00970000193655 ENSGT00530000063723.a #28 ENSGT00940000154389.b #30 ENSGT01100000263932 ENSGT00900000141073 ENSGT00940000158044.a #31 ENSGT00940000160711 ENSGT00390000006265.b ENSGT00950000183101.b ENSGT00390000017663 ENSGT00940000154637 ENSGT01020000230351.F Platypus MODERN SPECIES 13 TRMT2A (ENSOANG00000041446) #28 DGCR8 (ENSOANG00000037809) #26 YPEL1 (ENSOANG00000029892) #8 PPIL2 (ENSOANG00000047102) #9 HIRA (ENSOANG00000040308) #10 ENSOANG00000039468 #11 C22orf39 (ENSOANG00000046898) #12 UFD1 (ENSOANG00000045527) #13 CDC45 (ENSOANG00000020977) #14 ENSOANG00000044402 #17 SEPTIN5 (ENSOANG00000008487) CLDN5 (ENSOANG00000003574) #15 TBX1 (ENSOANG00000020824) #18 GNB1L (ENSOANG00000013233) #19 TXNRD2 (ENSOANG00000043007) #20 COMT (ENSOANG00000041289) #23 ARVCF (ENSOANG00000038057) #24 TANGO2 (ENSOANG00000038459) #25 MAPK1 (ENSOANG00000037598) #7 ENSOANG00000039399 TOP3B (ENSOANG00000045186) SDF2L1 (ENSOANG00000044827) YDJC (ENSOANG00000043530) ENSOANG00000008005 SERPIND1 (ENSOANG00000045569) PI4KA (ENSOANG00000040206) SNAP29 (ENSOANG00000049507) ENSOANG00000043472 ENSOANG00000038504 ENSOANG00000040918 ENSOANG00000044049 Theria ANCESTRAL SPECIES 53 ENSGT00940000162536 ENSGT00550000074856 ENSGT00950000183166.a.b ENSGT00550000074919 #10 ENSGT00390000010239 #11 ENSGT00390000002511 #12 ENSGT00390000002408 #13 ENSGT00390000009662 #14 ENSGT00940000161769 #15 ENSGT00940000164668 #16 ENSGT00940000159913 ENSGT00530000064244.b #17 ENSGT00940000154816.a.b #18 ENSGT00390000018606 #19 ENSGT00940000158832 #20 ENSGT00940000155317.b #23 ENSGT00940000157027 #24 ENSGT00390000012733 #25 ENSGT00390000015977 #26 ENSGT00970000193655 ENSGT00530000063723.a #28 ENSGT00940000154389.b #30 ENSGT01100000263932 ENSGT00900000141073 ENSGT00940000158044.a #31 ENSGT00940000153380.D ENSGT00940000160711 ENSGT00390000006265.b Marsupialia ANCESTRAL SPECIES 16 ENSGT00940000162536 ENSGT00550000074856 ENSGT00950000183166.a.b ENSGT00550000074919 #10 ENSGT00390000010239 #11 ENSGT00390000002511 #12 ENSGT00390000002408 #13 ENSGT00390000009662 #14 ENSGT00940000161769 #15 ENSGT00940000164668 #16 ENSGT00940000159913 ENSGT00530000064244.b #17 ENSGT00940000154816.a.b #18 ENSGT00390000018606 #19 ENSGT00940000158832 #20 ENSGT00940000155317.b #23 ENSGT00940000157027 #24 ENSGT00390000012733 #25 ENSGT00390000015977 #26 ENSGT01100000263932 ENSGT00530000063723.a #28 ENSGT00900000141073 ENSGT00940000158044.a #31 ENSGT00940000153380.D ENSGT00940000160711 ENSGT00390000006265.b Marsupialia_b ANCESTRAL SPECIES 17 ENSGT00940000162536 ENSGT00550000074856 ENSGT00950000183166.a.b ENSGT00550000074919 #10 ENSGT00390000010239 #11 ENSGT00390000002511 #12 ENSGT00390000002408 #13 ENSGT00390000009662 #14 ENSGT00940000161769 #15 ENSGT00940000164668 #16 ENSGT00940000159913 ENSGT00530000064244.b #17 ENSGT00940000154816.a.b #18 ENSGT00390000018606 #19 ENSGT00940000158832 #20 ENSGT00940000155317.b #23 ENSGT00940000157027 #24 ENSGT00390000012733.g #25 ENSGT00390000015977 #26 ENSGT00530000063723.a #28 ENSGT01100000263932 ENSGT00900000141073 ENSGT00940000158044.a #31 ENSGT00950000182890.D.c.b.a.a.b.b.a.c.a.b.b ENSGT00940000153380.D ENSGT00940000160711 ENSGT00390000006265.b ENSGT01020000230351.F ENSGT00940000154297.B ENSGT00730000111394 ENSGT00940000158190 Diprotodontia ANCESTRAL SPECIES 22 ENSGT00940000169366 ENSGT00550000074856 ENSGT00950000183166.a.b ENSGT00550000074919 #10 ENSGT00390000010239 #11 ENSGT00390000002511 #12 ENSGT00390000002408 #13 ENSGT00390000009662 #14 ENSGT00940000161769 #15 ENSGT00940000164668 #16 ENSGT00940000159913 ENSGT00530000064244.b #17 ENSGT00940000154816.a.b #18 ENSGT00390000018606 #19 ENSGT00940000158832 #20 ENSGT00940000155317.b #23 ENSGT00940000157027 #24 ENSGT00390000012733.g #25 ENSGT00390000015977 #26 ENSGT01100000263932 ENSGT00530000063723.a #28 ENSGT00900000141073 ENSGT00940000158044.a #31 ENSGT00950000182890.D.c.b.a.a.b.b.a.c.a.b.b ENSGT00940000160711 ENSGT00390000006265.b ENSGT01020000230351.F ENSGT00940000154297.B ENSGT00730000111394 ENSGT00940000158190 ENSGT00940000160448 Diprotodontia_a ANCESTRAL SPECIES 22 ENSGT00940000169366 ENSGT00550000074856 ENSGT00950000183166.a.b ENSGT00550000074919 #10 ENSGT00390000010239 #11 ENSGT00390000002511 #12 ENSGT00390000002408 #13 ENSGT00390000009662 #14 ENSGT00940000161769 #15 ENSGT00940000164668 #16 ENSGT00940000159913 ENSGT00530000064244.b #17 ENSGT00940000154816.a.b #18 ENSGT00390000018606 #19 ENSGT00940000158832 #20 ENSGT00940000155317.b #23 ENSGT00940000157027 #24 ENSGT00390000012733.g #25 ENSGT00390000015977 #26 ENSGT01100000263932 ENSGT00530000063723.a #28 ENSGT00900000141073 ENSGT00940000158044.a #31 ENSGT00950000182890.D.c.b.a.a.b.b.a.c.a.b.b ENSGT00950000182890.D.c.b.a.a.b.b.a.c.a.a.b.b ENSGT00940000160711 ENSGT00390000006265.b ENSGT01020000230351.F ENSGT00940000154297.B ENSGT00730000111394 ENSGT00940000158190 Common wonbat MODERN SPECIES 910 ENSVURG00010015531 SLC25A1 (ENSVURG00010015522) CLTCL1 (ENSVURG00010015450) HIRA (ENSVURG00010015408) #10 ENSVURG00010015399 MRPL40 (ENSVURG00010015389) #11 ENSVURG00010015383 UFD1 (ENSVURG00010015367) #13 CDC45 (ENSVURG00010015347) #14 ENSVURG00010015332 #16 SEPTIN5 (ENSVURG00010015310) TBX1 (ENSVURG00010015193) #18 GNB1L (ENSVURG00010015163) #19 TXNRD2 (ENSVURG00010015133) #20 ENSVURG00010015112 COMT (ENSVURG00010015104) #23 ARVCF (ENSVURG00010014746) #24 TANGO2 (ENSVURG00010014670) #25 ENSVURG00010014659 DGCR8 (ENSVURG00010014514) #26 ENSVURG00010014490 TRMT2A (ENSVURG00010014478) #28 RANBP1 (ENSVURG00010014464) ZDHHC8 (ENSVURG00010014441) #31 ENSVURG00010014425 koala MODERN SPECIES 64 ENSPCIG00000001881 SLC25A1 (ENSPCIG00000025458) CLTCL1 (ENSPCIG00000025462) HIRA (ENSPCIG00000025474) #10 MRPL40 (ENSPCIG00000025479) #11 C22orf39 (ENSPCIG00000025482) #12 UFD1 (ENSPCIG00000025484) #13 CDC45 (ENSPCIG00000031353) #14 ENSPCIG00000033257 #15 ENSPCIG00000025491 #16 SEPTIN5 (ENSPCIG00000035677) GP1BB (ENSPCIG00000036048) #17 TBX1 (ENSPCIG00000025495) #18 GNB1L (ENSPCIG00000025496) #19 TXNRD2 (ENSPCIG00000025501) #20 ENSPCIG00000002881 #23 ARVCF (ENSPCIG00000002119) #24 TANGO2 (ENSPCIG00000013730) #25 ENSPCIG00000013727 DGCR8 (ENSPCIG00000027728) #26 TRMT2A (ENSPCIG00000027719) #28 ENSPCIG00000027726 RANBP1 (ENSPCIG00000027715) ZDHHC8 (ENSPCIG00000027712) #31 ENSPCIG00000027710 ENSPCIG00000036969 ENSPCIG00000033718 ENSPCIG00000005425 ENSPCIG00000031895 ENSPCIG00000014304 ENSPCIG00000031834 Wallaby MODERN SPECIES 721 COMT (ENSMEUG00000004191) #23 Tasmanian devil MODERN SPECIES ENSSHAG00000008223 SLC25A1 (ENSSHAG00000030886) CLTCL1 (ENSSHAG00000008777) ENSSHAG00000009464 #10 ENSSHAG00000010239 #11 ENSSHAG00000021521 #12 UFD1 (ENSSHAG00000010299) #13 CDC45 (ENSSHAG00000010439) #14 CLDN5 (ENSSHAG00000023048) #15 ENSSHAG00000011013 #16 ENSSHAG00000027754 GP1BB (ENSSHAG00000028367) #17 ENSSHAG00000005016 #18 GNB1L (ENSSHAG00000014663) #19 ENSSHAG00000001833 #20 COMT (ENSSHAG00000030258) #23 ARVCF (ENSSHAG00000030473) #24 ENSSHAG00000023797 #25 ENSSHAG00000008680 #25 DGCR8 (ENSSHAG00000002274) #26 TRMT2A (ENSSHAG00000027993) #28 ENSSHAG00000029402 ENSSHAG00000023384 ENSSHAG00000024528 #31 ENSSHAG00000027819 ENSSHAG00000026639 ENSSHAG00000004125 ENSSHAG00000020606 ENSSHAG00000021222 ENSSHAG00000025337 ENSSHAG00000001808 Opossum MODERN SPECIES 22 COMT (ENSMODG00000019644) #23 Eutheria ANCESTRAL SPECIES 37 ENSGT00390000009387 ENSGT00940000162536 ENSGT00550000074856 ENSGT00950000183166.a.b ENSGT00550000074919 #10 ENSGT00390000010239 #11 ENSGT00390000002511 #12 ENSGT00390000002408 #13 ENSGT00390000009662 #14 ENSGT00940000161769 #15 ENSGT00940000159913 ENSGT00530000064244.b #17 ENSGT00940000154816.a.b #18 ENSGT00390000018606 #19 ENSGT00940000158832 #20 ENSGT00940000155317.b #23 ENSGT00940000157027 #24 ENSGT00390000012733 #25 ENSGT00390000015977 #26 ENSGT00970000193655 ENSGT00530000063723.a #28 ENSGT00900000141073 ENSGT00940000158044.a #31 ENSGT00940000153380.D ENSGT00940000160711 ENSGT00390000006265.b ENSGT00390000017663 ENSGT00940000161017 ENSGT01030000234531.A.a Atlantogenata ANCESTRAL SPECIES 77 ENSGT00390000009387 ENSGT00940000162536 ENSGT00550000074856 ENSGT00950000183166.a.b ENSGT00550000074919 #10 ENSGT00390000010239 #11 ENSGT00390000002511 #12 ENSGT00390000002408 #13 ENSGT00390000009662 #14 ENSGT00940000161769 #15 ENSGT00940000159913 ENSGT00530000064244.b #17 ENSGT00940000154816.a.b #18 ENSGT00390000018606 #19 ENSGT00940000158832 #20 ENSGT00940000155317.b #23 ENSGT00940000157027 #24 ENSGT00390000012733 #25 ENSGT00390000015977 #26 ENSGT00530000063723.a #28 ENSGT00900000141073 ENSGT00940000158044.a #31 ENSGT00940000153380.D ENSGT00940000160711 ENSGT00390000006265.b ENSGT00390000017663 ENSGT00940000161017 ENSGT01030000234531.A.a Xenarthra ANCESTRAL SPECIES 980 ENSGT00940000154816.a.b #18 ENSGT00390000018606 #19 ENSGT00940000158832 #20 ENSGT00940000155317.b #23 ENSGT00940000157027 #24 Armadillo MODERN SPECIES 4318 TBX1 (ENSDNOG00000035422) #18 GNB1L (ENSDNOG00000024523) #19 TXNRD2 (ENSDNOG00000039033) #20 COMT (ENSDNOG00000007084) #23 ARVCF (ENSDNOG00000007092) #24 Afrotheria ANCESTRAL SPECIES 107 ENSGT00550000074919 #10 ENSGT00390000010239 #11 ENSGT00390000002511 #12 ENSGT00390000002408 #13 ENSGT00390000009662 #14 ENSGT00940000161769 #15 ENSGT00940000159913 ENSGT00940000154816.a.b #18 ENSGT00390000018606 #19 ENSGT00940000158832 #20 ENSGT00940000155317.b #23 ENSGT00940000157027 #24 ENSGT00390000012733 #25 ENSGT00390000015977 #26 ENSGT00530000063723.a #28 ENSGT00900000141073 ENSGT00940000158044.a #31 ENSGT00940000160711 ENSGT00390000006265.b ENSGT00390000017663 ENSGT00940000161017 ENSGT01030000234531.A.a ENSGT00940000156516 ENSGT00940000158884 ENSGT00940000156771 #7 ENSGT00940000160018 Tenrec MODERN SPECIES 7510 TXNRD2 (ENSETEG00000006299) #20 COMT (ENSETEG00000006304) #23 Afrotheria_a ANCESTRAL SPECIES 109 ENSGT00550000074919 #10 ENSGT00390000010239 #11 ENSGT00390000002511 #12 ENSGT00390000002408 #13 ENSGT00390000009662 #14 ENSGT00940000161769 #15 ENSGT00940000159913 ENSGT00940000154816.a.b #18 ENSGT00390000018606 #19 ENSGT00940000158832 #20 ENSGT00940000155317.b #23 ENSGT00940000157027 #24 ENSGT00390000012733 #25 ENSGT00390000015977 #26 ENSGT00530000063723.a #28 ENSGT00900000141073 ENSGT00940000158044.a #31 ENSGT00940000160711 ENSGT00390000006265.b ENSGT00390000017663 ENSGT00940000161017 ENSGT01030000234531.A.a ENSGT00940000156516 ENSGT00940000158884 ENSGT00940000156771 #7 ENSGT00940000160018 Hyrax DUPLICATION Hyrax MODERN SPECIES 9855 ENSPCAG00000016804 #23 Hyrax MODERN SPECIES 82 ENSPCAG00000006771 #23 ARVCF (ENSPCAG00000006802) #24 Elephant MODERN SPECIES 517 CRYBB2 (ENSLAFG00000006843) CRYBB3 (ENSLAFG00000006837) ENSLAFG00000006832 LHFPL7 (ENSLAFG00000021920) SGSM1 (ENSLAFG00000015725) HIRA (ENSLAFG00000011054) #10 MRPL40 (ENSLAFG00000011061) #11 C22orf39 (ENSLAFG00000011063) #12 UFD1 (ENSLAFG00000011066) #13 CDC45 (ENSLAFG00000011072) #14 CLDN5 (ENSLAFG00000011077) #15 SEPTIN5 (ENSLAFG00000028004) TBX1 (ENSLAFG00000021555) #18 GNB1L (ENSLAFG00000020732) #19 TXNRD2 (ENSLAFG00000002408) #20 COMT (ENSLAFG00000028535) #23 ARVCF (ENSLAFG00000013570) #24 TANGO2 (ENSLAFG00000000319) #25 DGCR8 (ENSLAFG00000013724) #26 TRMT2A (ENSLAFG00000022939) #28 RANBP1 (ENSLAFG00000005862) ZDHHC8 (ENSLAFG00000001671) #31 RTN4R (ENSLAFG00000027673) ENSLAFG00000006399 ENSLAFG00000006396 ENSLAFG00000030923 Boreoeutheria ANCESTRAL SPECIES 20 ENSGT00940000162536 ENSGT00550000074856 ENSGT00950000183166.a.b ENSGT00550000074919 #10 ENSGT00390000010239 #11 ENSGT00390000002511 #12 ENSGT00390000002408 #13 ENSGT00390000009662 #14 ENSGT00940000161769 #15 ENSGT00940000159913 ENSGT00530000064244.b #17 ENSGT00940000154816.a.b #18 ENSGT00390000018606 #19 ENSGT00940000166811 ENSGT00940000158832 #20 ENSGT00940000155317.b #23 ENSGT00940000157027 #24 ENSGT00390000012733 #25 ENSGT00390000015977 #26 ENSGT00970000193655 ENSGT00530000063723.a #28 ENSGT00900000141073 ENSGT00940000158044.a #31 ENSGT00940000153380.D ENSGT00940000160711 ENSGT00390000006265.b ENSGT00390000017663 Euarchontoglires ANCESTRAL SPECIES 20 ENSGT00940000162536 ENSGT00550000074856 ENSGT00950000183166.a.b ENSGT00550000074919 #10 ENSGT00390000010239 #11 ENSGT00390000002511 #12 ENSGT00390000002408 #13 ENSGT00390000009662 #14 ENSGT00940000161769 #15 ENSGT00940000159913 ENSGT00530000064244.b #17 ENSGT00940000154816.a.b #18 ENSGT00390000018606 #19 ENSGT00940000166811 ENSGT00940000158832 #20 ENSGT00940000155317.b #23 ENSGT00940000157027 #24 ENSGT00390000012733 #25 ENSGT00390000015977 #26 ENSGT00970000193655 ENSGT00530000063723.a #28 ENSGT00900000141073 ENSGT00940000158044.a #31 ENSGT00940000153380.D ENSGT00940000160711 ENSGT00390000006265.b ENSGT00390000017663 Primates ANCESTRAL SPECIES 31 ENSGT00940000162536 ENSGT00550000074856 ENSGT00950000183166.a.b ENSGT00550000074919 #10 ENSGT00390000010239 #11 ENSGT00390000002511 #12 ENSGT00390000002408 #13 ENSGT00390000009662 #14 ENSGT00940000161769 #15 ENSGT00940000159913 ENSGT00530000064244.b #17 ENSGT00940000154816.a.b #18 ENSGT00390000018606 #19 ENSGT00940000166811 ENSGT00940000158832 #20 ENSGT00940000155317.b #23 ENSGT00940000157027 #24 ENSGT00390000012733 #25 ENSGT00390000015977 #26 ENSGT00530000063723.a #28 ENSGT00900000141073 ENSGT00940000158044.a #31 ENSGT00940000153380.D ENSGT00940000160711 ENSGT00390000006265.b Haplorrhini ANCESTRAL SPECIES 44 ENSGT00940000162536 ENSGT00550000074856 ENSGT00950000183166.a.b ENSGT00550000074919 #10 ENSGT00390000010239 #11 ENSGT00390000002511 #12 ENSGT00390000002408 #13 ENSGT00390000009662 #14 ENSGT00940000161769 #15 ENSGT00940000159913 ENSGT00530000064244.b #17 ENSGT00940000154816.a.b #18 ENSGT00390000018606 #19 ENSGT00940000166811 ENSGT00940000158832 #20 ENSGT00940000155317.b #23 ENSGT00940000157027 #24 ENSGT00390000012733 #25 ENSGT00390000015977 #26 ENSGT00530000063723.a #28 ENSGT00900000141073 ENSGT00940000158044.a #31 ENSGT00940000153380.D ENSGT00940000160711 ENSGT00390000006265.b Simiiformes ANCESTRAL SPECIES 30 ENSGT00940000162536 ENSGT00550000074856 ENSGT00950000183166.a.b ENSGT00550000074919 #10 ENSGT00390000010239 #11 ENSGT00390000002511 #12 ENSGT00390000002408.c.a #13 ENSGT00390000009662 #14 ENSGT00940000161769 #15 ENSGT00940000159913 ENSGT00530000064244.b #17 ENSGT00940000154816.a.b #18 ENSGT00390000018606 #19 ENSGT00940000166811 ENSGT00940000158832 #20 ENSGT00940000155317.b #23 ENSGT00940000157027 #24 ENSGT00390000012733 #25 ENSGT00390000015977 #26 ENSGT00530000063723.a #28 ENSGT00900000141073.r ENSGT00940000158044.a #31 ENSGT00940000153380.D ENSGT00940000160711 ENSGT00390000006265.b ENSGT00390000017663.w.a ENSGT00940000161720 ENSGT00940000159668 ENSGT00510000049725 ENSGT00530000069254 ENSGT00940000155580.b.b Catarrhini ANCESTRAL SPECIES 28 ENSGT00910000147541 ENSGT00550000074856 ENSGT00950000183166.a.b ENSGT00550000074919 #10 ENSGT00390000010239 #11 ENSGT00390000002511 #12 ENSGT00390000002408.c.a.a #13 ENSGT00390000009662 #14 ENSGT00940000161769 #15 ENSGT00940000159913 ENSGT00530000064244.b #17 ENSGT00940000154816.a.b #18 ENSGT00390000018606 #19 ENSGT00940000166811 ENSGT00940000158832 #20 ENSGT00940000155317.b #23 ENSGT00940000157027 #24 ENSGT00390000012733 #25 ENSGT00390000015977 #26 ENSGT00530000063723.a #28 ENSGT00900000141073.r ENSGT00940000158044.a #31 ENSGT00940000153380.D.b ENSGT00550000076205 ENSGT00940000153380.D.a.a ENSGT00940000160711 ENSGT00390000006265.b ENSGT00390000017663.x.b ENSGT00940000161720 ENSGT00940000159668 ENSGT00510000049725 Hominoidea ANCESTRAL SPECIES 31 ENSGT00910000147541 ENSGT00550000074856 ENSGT00950000183166.a.b ENSGT00550000074919 #10 ENSGT00390000010239 #11 ENSGT00390000002511 #12 ENSGT00390000002408.c.a.a #13 ENSGT00390000009662 #14 ENSGT00940000161769 #15 ENSGT00940000159913 ENSGT00530000064244.b #17 ENSGT00940000154816.a.b #18 ENSGT00390000018606 #19 ENSGT00940000166811 ENSGT00940000158832 #20 ENSGT00940000155317.b #23 ENSGT00940000157027 #24 ENSGT00390000012733 #25 ENSGT00390000015977 #26 ENSGT00530000063723.a #28 ENSGT00900000141073.r ENSGT00940000158044.a #31 ENSGT00940000153380.D.b ENSGT00550000076205 ENSGT00940000160711 ENSGT00940000162000.d ENSGT00950000183101.b ENSGT00940000155199.mb ENSGT00940000159598 ENSGT00730000111140 ENSGT00940000154297.B Hominidae ANCESTRAL SPECIES 21 ENSGT00910000147541 ENSGT00550000074856 ENSGT00950000183166.a.b ENSGT00550000074919 #10 ENSGT00390000010239 #11 ENSGT00390000002511 #12 ENSGT00390000002408.c.a.a #13 ENSGT00390000009662 #14 ENSGT00940000161769 #15 ENSGT00940000159913 ENSGT00530000064244.b #17 ENSGT00940000154816.a.b #18 ENSGT00390000018606 #19 ENSGT00940000166811 ENSGT00940000158832 #20 ENSGT00940000155317.b #23 ENSGT00940000157027 #24 ENSGT00390000012733 #25 ENSGT00390000015977 #26 ENSGT00530000063723.a #28 ENSGT00900000141073.r ENSGT00940000158044.a #31 ENSGT00940000153380.D.b ENSGT00550000076205 ENSGT00940000160711 ENSGT00390000017663.x.b ENSGT00940000164457.A.d ENSGT00940000162000.d ENSGT00950000183101.b ENSGT00940000159598 ENSGT00730000111140 Homo/Pan/Gorilla group ANCESTRAL SPECIES 21 ENSGT00910000147541 ENSGT00550000074856 ENSGT00950000183166.a.b ENSGT00550000074919 #10 ENSGT00390000010239 #11 ENSGT00390000002511 #12 ENSGT00390000002408.c.a.a #13 ENSGT00390000009662 #14 ENSGT00940000161769 #15 ENSGT00940000159913 ENSGT00530000064244.b #17 ENSGT00940000154816.a.b #18 ENSGT00390000018606 #19 ENSGT00940000166811 ENSGT00940000158832 #20 ENSGT00940000155317.b #23 ENSGT00940000157027 #24 ENSGT00390000012733 #25 ENSGT00390000015977 #26 ENSGT00530000063723.a #28 ENSGT00900000141073.r.a ENSGT00940000158044.a #31 ENSGT00940000153380.D.b ENSGT00550000076205 ENSGT00940000160711 ENSGT00390000017663.x.b.b ENSGT00940000162000.d ENSGT00950000183101.b ENSGT00940000159598 ENSGT00940000155199.mb ENSGT00940000153309.c.b.a.b.b.b Homo/Pan group ANCESTRAL SPECIES 20 ENSGT00910000147541 ENSGT00550000074856 ENSGT00950000183166.a.b ENSGT00550000074919 #10 ENSGT00390000010239 #11 ENSGT00390000002511 #12 ENSGT00390000002408.c.a.a #13 ENSGT00390000009662 #14 ENSGT00940000161769 #15 ENSGT00940000159913 ENSGT00530000064244.b #17 ENSGT00940000154816.a.b #18 ENSGT00390000018606 #19 ENSGT00940000166811 ENSGT00940000158832 #20 ENSGT00940000155317.b #23 ENSGT00940000157027 #24 ENSGT00390000012733 #25 ENSGT00390000015977 #26 ENSGT00530000063723.a #28 ENSGT00900000141073.r.a ENSGT00940000158044.a #31 ENSGT00940000153380.D.b ENSGT00550000076205 ENSGT00940000160711 ENSGT00390000017663.x.b.b ENSGT00940000162000.d ENSGT00950000183101.b ENSGT00940000159598 ENSGT00940000155199.mb ENSGT00940000153309.c.b.a.b.b.b Pan ANCESTRAL SPECIES 35 ENSGT00910000147541 ENSGT00550000074856 ENSGT00950000183166.a.b ENSGT00550000074919 #10 ENSGT00390000010239 #11 ENSGT00390000002511 #12 ENSGT00390000002408.c.a.a #13 ENSGT00390000009662 #14 ENSGT00940000161769 #15 ENSGT00940000159913 ENSGT00530000064244.b #17 ENSGT00940000154816.a.b #18 ENSGT00390000018606 #19 ENSGT00940000155193.a.b ENSGT00940000158832 #20 ENSGT00940000155317.b #23 ENSGT00940000157027 #24 ENSGT00390000012733 #25 ENSGT00390000015977 #26 ENSGT00530000063723.a #28 ENSGT00900000141073.r.a ENSGT00940000158044.a #31 ENSGT00940000153380.D.b ENSGT00550000076205 ENSGT00940000160711 ENSGT00390000017663.x.b.b ENSGT00940000162000.d ENSGT00950000183101.b ENSGT00940000159598 ENSGT00940000155199.mb ENSGT00940000153309.c.b.a.b.b.b Chimpanzee MODERN SPECIES 13 GSC2 (ENSPTRG00000050838) ENSPTRG00000045428 SLC25A1 (ENSPTRG00000014057) CLTCL1 (ENSPTRG00000014058) HIRA (ENSPTRG00000014060) #10 MRPL40 (ENSPTRG00000014061) #11 C22H22orf39 (ENSPTRG00000051117) #12 UFD1 (ENSPTRG00000043162) #13 CDC45 (ENSPTRG00000014064) #14 SEPTIN5 (ENSPTRG00000014066) GP1BB (ENSPTRG00000033843) #17 TBX1 (ENSPTRG00000014067) #18 GNB1L (ENSPTRG00000044843) #19 ENSPTRG00000049410 TXNRD2 (ENSPTRG00000014069) #20 COMT (ENSPTRG00000014070) #23 ARVCF (ENSPTRG00000014071) #24 TANGO2 (ENSPTRG00000014072) #25 DGCR8 (ENSPTRG00000014073) #26 TRMT2A (ENSPTRG00000014074) #28 RANBP1 (ENSPTRG00000043450) ZDHHC8 (ENSPTRG00000014077) #31 CCDC188 (ENSPTRG00000042466) ENSPTRG00000038652 RTN4R (ENSPTRG00000014079) DGCR6L (ENSPTRG00000014080) ENSPTRG00000046891 ZNF74 (ENSPTRG00000014083) SCARF2 (ENSPTRG00000014084) KLHL22 (ENSPTRG00000014085) ENSPTRG00000043076 Bonobo MODERN SPECIES 13 ENSPPAG00000035340 ENSPPAG00000032546 SLC25A1 (ENSPPAG00000003691) CLTCL1 (ENSPPAG00000030517) HIRA (ENSPPAG00000037592) #10 MRPL40 (ENSPPAG00000030349) #11 ENSPPAG00000031774 #12 UFD1 (ENSPPAG00000035639) #13 CDC45 (ENSPPAG00000028685) #14 ENSPPAG00000040414 #15 SEPTIN5 (ENSPPAG00000042516) ENSPPAG00000032550 #18 GNB1L (ENSPPAG00000041675) #19 ENSPPAG00000035063 TXNRD2 (ENSPPAG00000042002) #20 COMT (ENSPPAG00000027543) #23 ARVCF (ENSPPAG00000027324) #24 TANGO2 (ENSPPAG00000042205) #25 DGCR8 (ENSPPAG00000039507) #26 TRMT2A (ENSPPAG00000043781) #28 RANBP1 (ENSPPAG00000042966) ZDHHC8 (ENSPPAG00000016192) #31 CCDC188 (ENSPPAG00000036009) ENSPPAG00000006622 RTN4R (ENSPPAG00000005770) ZNF74 (ENSPPAG00000035031) ENSPPAG00000037889 KLHL22 (ENSPPAG00000029088) ENSPPAG00000027009 ENSPPAG00000027529 MED15 (ENSPPAG00000028479) Human MODERN SPECIES 14 GSC2 (ENSG00000063515) SLC25A1 (ENSG00000100075) CLTCL1 (ENSG00000070371) HIRA (ENSG00000100084) #10 C22orf39 (ENSG00000242259) #12 MRPL40 (ENSG00000185608) #11 UFD1 (ENSG00000070010) #13 CDC45 (ENSG00000093009) #14 CLDN5 (ENSG00000184113) #15 SEPTIN5 (ENSG00000184702) GP1BB (ENSG00000203618) #17 TBX1 (ENSG00000184058) #18 GNB1L (ENSG00000185838) #19 RTL10 (ENSG00000215012) TXNRD2 (ENSG00000184470) #20 COMT (ENSG00000093010) #23 ARVCF (ENSG00000099889) #24 TANGO2 (ENSG00000183597) #25 DGCR8 (ENSG00000128191) #26 TRMT2A (ENSG00000099899) #28 RANBP1 (ENSG00000099901) ZDHHC8 (ENSG00000099904) #31 CCDC188 (ENSG00000234409) RTN4R (ENSG00000040608) DGCR6L (ENSG00000128185) ZNF74 (ENSG00000185252) SCARF2 (ENSG00000244486) KLHL22 (ENSG00000099910) MED15 (ENSG00000099917) PI4KA (ENSG00000241973) SERPIND1 (ENSG00000099937) Gorilla MODERN SPECIES 13 GSC2 (ENSGGOG00000022383) ENSGGOG00000036832 SLC25A1 (ENSGGOG00000006198) CLTCL1 (ENSGGOG00000006207) HIRA (ENSGGOG00000000992) #10 MRPL40 (ENSGGOG00000012336) #11 ENSGGOG00000004101 #12 UFD1 (ENSGGOG00000004104) #13 CDC45 (ENSGGOG00000004116) #14 SEPTIN5 (ENSGGOG00000016545) GP1BB (ENSGGOG00000025760) #17 ENSGGOG00000009181 GNB1L (ENSGGOG00000039800) #19 ENSGGOG00000038673 ENSGGOG00000001980 #20 COMT (ENSGGOG00000006699) #23 ARVCF (ENSGGOG00000006706) #24 TANGO2 (ENSGGOG00000004830) #25 DGCR8 (ENSGGOG00000000780) #26 TRMT2A (ENSGGOG00000000783) #28 RANBP1 (ENSGGOG00000000784) ZDHHC8 (ENSGGOG00000000785) #31 CCDC188 (ENSGGOG00000022917) RTN4R (ENSGGOG00000006055) DGCR6L (ENSGGOG00000006060) ENSGGOG00000015940 ENSGGOG00000015817 ZNF74 (ENSGGOG00000015829) SCARF2 (ENSGGOG00000015838) KLHL22 (ENSGGOG00000015856) ENSGGOG00000043161 Orangutan MODERN SPECIES 13 SLC25A1 (ENSPPYG00000029785) CLTCL1 (ENSPPYG00000011576) HIRA (ENSPPYG00000011577) #10 MRPL40 (ENSPPYG00000011578) #11 C22H22orf39 (ENSPPYG00000037291) #12 UFD1 (ENSPPYG00000011580) #13 CDC45 (ENSPPYG00000011581) #14 CLDN5 (ENSPPYG00000011582) #15 SEPTIN5 (ENSPPYG00000011583) GP1BB (ENSPPYG00000011584) #17 TBX1 (ENSPPYG00000011585) #18 ENSPPYG00000033606 RTL10 (ENSPPYG00000032970) GNB1L (ENSPPYG00000011586) #19 TXNRD2 (ENSPPYG00000011587) #20 ENSPPYG00000011588 #23 ARVCF (ENSPPYG00000011589) #24 TANGO2 (ENSPPYG00000011590) #25 DGCR8 (ENSPPYG00000011591) #26 TRMT2A (ENSPPYG00000011592) #28 RANBP1 (ENSPPYG00000011593) ZDHHC8 (ENSPPYG00000011594) #31 ENSPPYG00000040850 ENSPPYG00000011596 RTN4R (ENSPPYG00000011597) ENSPPYG00000025952 ZNF74 (ENSPPYG00000011598) SCARF2 (ENSPPYG00000011599) KLHL22 (ENSPPYG00000011600) MED15 (ENSPPYG00000011601) LRRC74B (ENSPPYG00000012039) Gibbon MODERN SPECIES 22 ESS2 (ENSNLEG00000005148) ENSNLEG00000030109 SLC25A1 (ENSNLEG00000031202) CLTCL1 (ENSNLEG00000005221) HIRA (ENSNLEG00000005303) #10 MRPL40 (ENSNLEG00000005372) #11 C22orf39 (ENSNLEG00000034195) #12 UFD1 (ENSNLEG00000005378) #13 CDC45 (ENSNLEG00000005423) #14 SEPTIN5 (ENSNLEG00000005511) GP1BB (ENSNLEG00000028896) #17 ENSNLEG00000005519 #18 GNB1L (ENSNLEG00000005524) #19 RTL10 (ENSNLEG00000019209) TXNRD2 (ENSNLEG00000005534) #20 COMT (ENSNLEG00000030236) #23 ARVCF (ENSNLEG00000005621) #24 ENSNLEG00000005635 #25 DGCR8 (ENSNLEG00000005643) #26 TRMT2A (ENSNLEG00000005670) #28 RANBP1 (ENSNLEG00000005684) ZDHHC8 (ENSNLEG00000005693) #31 ENSNLEG00000032706 RTN4R (ENSNLEG00000005706) ENSNLEG00000027550 ENSNLEG00000034901 ENSNLEG00000005737 SCARF2 (ENSNLEG00000007911) ENSNLEG00000028230 KLHL22 (ENSNLEG00000007910) MED15 (ENSNLEG00000007907) Cercopithecidae ANCESTRAL SPECIES 30 ENSGT00910000147541 ENSGT00550000074856 ENSGT00950000183166.a.b ENSGT00550000074919 #10 ENSGT00390000010239 #11 ENSGT00390000002511 #12 ENSGT00390000002408.c.a.a #13 ENSGT00390000009662 #14 ENSGT00940000161769 #15 ENSGT00940000159913 ENSGT00530000064244.b #17 ENSGT00940000154816.a.b #18 ENSGT00390000018606 #19 ENSGT00940000166811 ENSGT00940000158832 #20 ENSGT00940000155317.b #23 ENSGT00940000157027 #24 ENSGT00390000012733 #25 ENSGT00390000015977 #26 ENSGT00530000063723.a #28 ENSGT00900000141073.r ENSGT00940000158044.a #31 ENSGT00940000153380.D.b ENSGT00550000076205 ENSGT00940000153380.D.a.a ENSGT00940000160711 ENSGT00390000006265.b ENSGT00390000017663.x.b ENSGT00940000161720 ENSGT00940000159668 ENSGT00510000049725 Rhinopithecus ANCESTRAL SPECIES 187 ENSGT00940000162536 ENSGT00910000147541 ENSGT00550000074856 ENSGT00950000183166.a.b ENSGT00550000074919 #10 ENSGT00390000010239 #11 ENSGT00390000002511 #12 ENSGT00390000002408.c.b #13 ENSGT00390000009662 #14 ENSGT00940000161769 #15 ENSGT00940000159913 ENSGT00530000064244.b #17 ENSGT00940000154816.a.b #18 ENSGT00390000018606 #19 ENSGT00940000158832 #20 ENSGT00940000155317.b #23 ENSGT00940000157027 #24 ENSGT00390000012733 #25 ENSGT00390000015977 #26 ENSGT00900000141073.r.c ENSGT00530000063723.a #28 ENSGT00940000158044.a #31 ENSGT00940000153380.D.b ENSGT00550000076205 ENSGT00940000160711 Golden snub-nosed monkey MODERN SPECIES 2675 ENSRROG00000042152 #18 GNB1L (ENSRROG00000036236) #19 TXNRD2 (ENSRROG00000000333) #20 COMT (ENSRROG00000044726) #23 ARVCF (ENSRROG00000041949) #24 TANGO2 (ENSRROG00000035026) #25 DGCR8 (ENSRROG00000029948) #26 TRMT2A (ENSRROG00000036706) #28 ENSRROG00000028972 ZDHHC8 (ENSRROG00000008376) #31 CCDC188 (ENSRROG00000034765) ENSRROG00000035329 RTN4R (ENSRROG00000034795) Black snub-nosed monkey MODERN SPECIES 1862 ENSRBIG00000031759 SLC25A1 (ENSRBIG00000028644) CLTCL1 (ENSRBIG00000039464) HIRA (ENSRBIG00000028086) #10 MRPL40 (ENSRBIG00000023060) #11 C22orf39 (ENSRBIG00000035936) #12 ENSRBIG00000041874 #13 ENSRBIG00000031663 CDC45 (ENSRBIG00000038253) #14 CLDN5 (ENSRBIG00000029244) #15 SEPTIN5 (ENSRBIG00000041362) GP1BB (ENSRBIG00000028483) #17 TBX1 (ENSRBIG00000042831) #18 GNB1L (ENSRBIG00000039954) #19 TXNRD2 (ENSRBIG00000029825) #20 COMT (ENSRBIG00000035474) #23 ARVCF (ENSRBIG00000038003) #24 TANGO2 (ENSRBIG00000028257) #25 DGCR8 (ENSRBIG00000015201) #26 TRMT2A (ENSRBIG00000013553) #28 RANBP1 (ENSRBIG00000040239) ZDHHC8 (ENSRBIG00000041762) #31 CCDC188 (ENSRBIG00000035259) ENSRBIG00000043737 Cercopithecinae ANCESTRAL SPECIES 11 ENSGT00940000162536 ENSGT00550000074856 ENSGT00950000183166.a.b ENSGT00550000074919 #10 ENSGT00390000010239 #11 ENSGT00390000002511 #12 ENSGT00390000002408.c.a.a #13 ENSGT00390000009662 #14 ENSGT00940000161769 #15 ENSGT00940000159913 ENSGT00530000064244.b #17 ENSGT00940000154816.a.b #18 ENSGT00390000018606 #19 ENSGT00940000166811 ENSGT00940000158832 #20 ENSGT00940000155317.b #23 ENSGT00940000157027 #24 ENSGT00390000012733 #25 ENSGT00390000015977 #26 ENSGT00530000063723.a #28 ENSGT00900000141073.r ENSGT00940000158044.a #31 ENSGT00940000153380.D.b ENSGT00550000076205 ENSGT00940000153380.D.a.a ENSGT00940000160711 ENSGT00390000006265.b ENSGT00390000017663.x.b.d ENSGT00940000161720 ENSGT00940000159668 ENSGT00510000049725 Vervet Monkey MODERN SPECIES 10 DGCR2 (ENSCSAG00000011477) TSSK2 (ENSCSAG00000019273) ESS2 (ENSCSAG00000011488) GSC2 (ENSCSAG00000011500) CLTCL1 (ENSCSAG00000011559) HIRA (ENSCSAG00000011583) #10 MRPL40 (ENSCSAG00000011593) #11 C22orf39 (ENSCSAG00000011597) #12 UFD1 (ENSCSAG00000011687) #13 CDC45 (ENSCSAG00000011723) #14 CLDN5 (ENSCSAG00000019272) #15 SEPTIN5 (ENSCSAG00000011732) TBX1 (ENSCSAG00000011818) #18 GNB1L (ENSCSAG00000011917) #19 TXNRD2 (ENSCSAG00000011933) #20 COMT (ENSCSAG00000011940) #23 ARVCF (ENSCSAG00000011970) #24 TANGO2 (ENSCSAG00000011981) #25 DGCR8 (ENSCSAG00000011993) #26 TRMT2A (ENSCSAG00000012001) #28 RANBP1 (ENSCSAG00000012086) ZDHHC8 (ENSCSAG00000012164) #31 CCDC188 (ENSCSAG00000012178) RTN4R (ENSCSAG00000019271) ENSCSAG00000012202 ENSCSAG00000012215 ENSCSAG00000012221 ZNF74 (ENSCSAG00000012224) SCARF2 (ENSCSAG00000012308) KLHL22 (ENSCSAG00000012359) MED15 (ENSCSAG00000012582) Cercopithecinae_a ANCESTRAL SPECIES 26 ENSGT00940000162536 ENSGT00550000074856 ENSGT00950000183166.a.b ENSGT00550000074919 #10 ENSGT00390000010239.j #11 ENSGT00390000002511 #12 ENSGT00390000002408.c.a.a #13 ENSGT00390000009662 #14 ENSGT00940000161769 #15 ENSGT00940000159913 ENSGT00530000064244.b #17 ENSGT00940000154816.a.b #18 ENSGT00390000018606 #19 ENSGT00940000166811 ENSGT00940000158832 #20 ENSGT00940000155317.b #23 ENSGT00940000157027 #24 ENSGT00390000012733 #25 ENSGT00390000015977 #26 ENSGT00530000063723.a #28 ENSGT00900000141073.r ENSGT00940000158044.a #31 ENSGT00940000153380.D.b ENSGT00550000076205 ENSGT00940000153380.D.a.a ENSGT00940000160711 ENSGT00390000006265.b ENSGT00390000017663.x.b.d ENSGT00940000161720 ENSGT00940000159668 ENSGT00510000049725 Macaca ANCESTRAL SPECIES 27 ENSGT00940000162536 ENSGT00550000074856 ENSGT00950000183166.a.b ENSGT00550000074919 #10 ENSGT00390000010239.j #11 ENSGT00390000002511 #12 ENSGT00390000002408.c.a.a #13 ENSGT00390000009662 #14 ENSGT00940000161769 #15 ENSGT00940000159913 ENSGT00530000064244.b #17 ENSGT00940000154816.a.b #18 ENSGT00390000018606 #19 ENSGT00940000166811 ENSGT00940000158832 #20 ENSGT00940000155317.b #23 ENSGT00940000157027 #24 ENSGT00390000012733 #25 ENSGT00390000015977 #26 ENSGT00530000063723.a #28 ENSGT00900000141073.r ENSGT00940000158044.a #31 ENSGT00940000153380.D.b ENSGT00550000076205 ENSGT00940000153380.D.a.a ENSGT00940000160711 ENSGT00390000006265.b.g ENSGT00390000017663.x.b.c ENSGT01100000263584.a.a ENSGT00940000162000.d ENSGT00940000163677.a.b.a.a.a.a Macaca_a ANCESTRAL SPECIES 23 ENSGT00940000162536 ENSGT00550000074856 ENSGT00950000183166.a.b ENSGT00550000074919 #10 ENSGT00390000010239.j #11 ENSGT00390000002511 #12 ENSGT00390000002408.c.a.a #13 ENSGT00390000009662 #14 ENSGT00940000161769 #15 ENSGT00940000159913 ENSGT00530000064244.b #17 ENSGT00940000154816.a.b #18 ENSGT00390000018606 #19 ENSGT00940000166811 ENSGT00940000158832 #20 ENSGT00940000155317.b #23 ENSGT00940000157027 #24 ENSGT00390000012733 #25 ENSGT00390000015977 #26 ENSGT00530000063723.a #28 ENSGT00900000141073.r ENSGT00940000158044.a #31 ENSGT00940000153380.D.a.a ENSGT00940000160711 ENSGT00390000006265.b.g ENSGT00390000017663.x.b.c ENSGT00940000163677.a.b.a.a.a.a ENSGT00950000183101.b ENSGT00910000146854.b ENSGT00940000159598 ENSGT00730000111140 Crab-eating macaque MODERN SPECIES 1 ENSMFAG00000065698 CLTCL1 (ENSMFAG00000032523) ENSMFAG00000058504 ENSMFAG00000048274 MRPL40 (ENSMFAG00000032018) #11 HIRA (ENSMFAG00000030575) #10 C22orf39 (ENSMFAG00000040161) #12 UFD1 (ENSMFAG00000040923) #13 CDC45 (ENSMFAG00000045935) #14 SEPTIN5 (ENSMFAG00000038117) ENSMFAG00000061209 #17 TBX1 (ENSMFAG00000045435) #18 GNB1L (ENSMFAG00000045528) #19 RTL10 (ENSMFAG00000033419) TXNRD2 (ENSMFAG00000039502) #20 COMT (ENSMFAG00000030334) #23 ARVCF (ENSMFAG00000038042) #24 TANGO2 (ENSMFAG00000004021) #25 DGCR8 (ENSMFAG00000033708) #26 TRMT2A (ENSMFAG00000038705) #28 RANBP1 (ENSMFAG00000045937) CCDC188 (ENSMFAG00000039335) ENSMFAG00000062391 RTN4R (ENSMFAG00000002996) ENSMFAG00000036801 ENSMFAG00000042526 ENSMFAG00000064423 ENSMFAG00000002732 SCARF2 (ENSMFAG00000045605) ENSMFAG00000001895 KLHL22 (ENSMFAG00000000285) Rhesus MODERN SPECIES 1 ESS2 (ENSMMUG00000017384) GSC2 (ENSMMUG00000020988) SLC25A1 (ENSMMUG00000005431) CLTCL1 (ENSMMUG00000005432) HIRA (ENSMMUG00000009650) #10 MRPL40 (ENSMMUG00000058871) #11 UFD1 (ENSMMUG00000031106) #13 CDC45 (ENSMMUG00000021904) #14 CLDN5 (ENSMMUG00000060434) #15 ENSMMUG00000064911 GP1BB (ENSMMUG00000040434) #17 SEPTIN5 (ENSMMUG00000017134) TBX1 (ENSMMUG00000017140) #18 GNB1L (ENSMMUG00000017144) TXNRD2 (ENSMMUG00000017147) #20 COMT (ENSMMUG00000054068) #23 ARVCF (ENSMMUG00000017153) #24 TANGO2 (ENSMMUG00000020233) #25 DGCR8 (ENSMMUG00000020098) #26 TRMT2A (ENSMMUG00000020099) #28 RANBP1 (ENSMMUG00000020100) ZDHHC8 (ENSMMUG00000020101) #31 ENSMMUG00000040386 RTN4R (ENSMMUG00000011547) ENSMMUG00000041787 DGCR6L (ENSMMUG00000000560) ENSMMUG00000050014 ENSMMUG00000053802 ZNF74 (ENSMMUG00000056760) SCARF2 (ENSMMUG00000017171) MED15 (ENSMMUG00000023263) Pig-tailed macaque MODERN SPECIES 564 ESS2 (ENSMNEG00000029888) GSC2 (ENSMNEG00000033269) SLC25A1 (ENSMNEG00000032686) CLTCL1 (ENSMNEG00000041306) HIRA (ENSMNEG00000039592) #10 ENSMNEG00000034050 #11 C22orf39 (ENSMNEG00000029659) #12 UFD1 (ENSMNEG00000039946) #13 CDC45 (ENSMNEG00000030243) #14 CLDN5 (ENSMNEG00000027253) #15 SEPTIN5 (ENSMNEG00000036305) GP1BB (ENSMNEG00000037082) #17 TBX1 (ENSMNEG00000012296) #18 GNB1L (ENSMNEG00000042672) #19 TXNRD2 (ENSMNEG00000035876) #20 COMT (ENSMNEG00000022654) #23 ARVCF (ENSMNEG00000031345) #24 TANGO2 (ENSMNEG00000030656) #25 DGCR8 (ENSMNEG00000009733) #26 TRMT2A (ENSMNEG00000039235) #28 RANBP1 (ENSMNEG00000030353) ZDHHC8 (ENSMNEG00000028007) #31 CCDC188 (ENSMNEG00000036140) ENSMNEG00000045533 RTN4R (ENSMNEG00000041125) ENSMNEG00000039558 ENSMNEG00000037360 ZNF74 (ENSMNEG00000032562) SCARF2 (ENSMNEG00000044672) ENSMNEG00000038640 ENSMNEG00000035791 Cercopithecinae_b ANCESTRAL SPECIES 53 ENSGT00390000009387 ENSGT00940000162536 ENSGT00550000074856 ENSGT00950000183166.a.b ENSGT00550000074919 #10 ENSGT00390000010239.j #11 ENSGT00390000002511 #12 ENSGT00390000002408.c.b #13 ENSGT00390000009662 #14 ENSGT00940000161769 #15 ENSGT00940000159913 ENSGT00530000064244.b #17 ENSGT00940000154816.a.b #18 ENSGT00390000018606 #19 ENSGT00940000158832 #20 ENSGT00940000155317.b #23 ENSGT00940000157027 #24 ENSGT00390000012733 #25 ENSGT00390000015977 #26 ENSGT00530000063723.a #28 ENSGT00900000141073.r ENSGT00940000158044.a #31 ENSGT00940000153380.D.b ENSGT00550000076205 ENSGT00940000160711 ENSGT01100000263584.a.a ENSGT00940000162000.d ENSGT00950000183101.b ENSGT00940000155199.mb ENSGT00910000146854.b ENSGT00940000159598 Olive baboon MODERN SPECIES 7 ESS2 (ENSPANG00000001052) GSC2 (ENSPANG00000001053) SLC25A1 (ENSPANG00000049025) CLTCL1 (ENSPANG00000016741) HIRA (ENSPANG00000003895) #10 MRPL40 (ENSPANG00000007370) #11 C22orf39 (ENSPANG00000031229) #12 UFD1 (ENSPANG00000026172) #13 CDC45 (ENSPANG00000000619) #14 CLDN5 (ENSPANG00000000620) #15 ENSPANG00000001023 GP1BB (ENSPANG00000016740) #17 TBX1 (ENSPANG00000015763) #18 RTL10 (ENSPANG00000016401) TXNRD2 (ENSPANG00000010339) #20 COMT (ENSPANG00000006826) #23 ARVCF (ENSPANG00000007369) #24 TANGO2 (ENSPANG00000017418) #25 DGCR8 (ENSPANG00000019987) #26 TRMT2A (ENSPANG00000024085) #28 RANBP1 (ENSPANG00000024087) ZDHHC8 (ENSPANG00000015762) #31 RTN4R (ENSPANG00000019636) ENSPANG00000050477 MED15 (ENSPANG00000024303) KLHL22 (ENSPANG00000012339) SCARF2 (ENSPANG00000031361) ZNF74 (ENSPANG00000022560) ENSPANG00000047745 THAP7 (ENSPANG00000018658) LZTR1 (ENSPANG00000026324) Cercopithecinae_d ANCESTRAL SPECIES 110 ENSGT00390000009387 ENSGT00940000162536 ENSGT00550000074856 ENSGT00950000183166.a.b ENSGT00550000074919 #10 ENSGT00390000010239.j #11 ENSGT00390000002511 #12 ENSGT00390000002408.c.b #13 ENSGT00390000009662 #14 ENSGT00940000161769 #15 ENSGT00940000159913 ENSGT00530000064244.b #17 ENSGT00940000154816.a.b #18 ENSGT00390000018606 #19 ENSGT00940000158832 #20 ENSGT00940000155317.b #23 ENSGT00940000157027 #24 ENSGT00390000012733 #25 ENSGT00390000015977 #26 ENSGT00530000063723.a #28 ENSGT00900000141073.r ENSGT00940000158044.a #31 ENSGT00940000153380.D.b ENSGT00550000076205 ENSGT00940000160711 ENSGT01100000263584.a.a ENSGT00940000162000.d ENSGT00950000183101.b ENSGT00940000155199.mb ENSGT00910000146854.b ENSGT00940000159598 Sooty mangabey MODERN SPECIES 341 TSSK2 (ENSCATG00000018506) ESS2 (ENSCATG00000044330) GSC2 (ENSCATG00000035723) CLTCL1 (ENSCATG00000038670) HIRA (ENSCATG00000030278) #10 ENSCATG00000031418 #11 C22orf39 (ENSCATG00000040241) #12 ENSCATG00000042368 #13 CLDN5 (ENSCATG00000018548) #15 CDC45 (ENSCATG00000032501) #14 SEPTIN5 (ENSCATG00000040593) GP1BB (ENSCATG00000012778) #17 TBX1 (ENSCATG00000040533) #18 GNB1L (ENSCATG00000033605) #19 TXNRD2 (ENSCATG00000039276) #20 COMT (ENSCATG00000026178) #23 ARVCF (ENSCATG00000039904) #24 TANGO2 (ENSCATG00000040168) #25 DGCR8 (ENSCATG00000030676) #26 TRMT2A (ENSCATG00000042218) #28 RANBP1 (ENSCATG00000033471) ZDHHC8 (ENSCATG00000034583) #31 CCDC188 (ENSCATG00000030686) ENSCATG00000044033 RTN4R (ENSCATG00000030255) Drill MODERN SPECIES 932 DGCR2 (ENSMLEG00000043386) ESS2 (ENSMLEG00000028952) SLC25A1 (ENSMLEG00000039103) CLTCL1 (ENSMLEG00000032739) HIRA (ENSMLEG00000029819) #10 ENSMLEG00000030926 #11 C22orf39 (ENSMLEG00000028236) #12 ENSMLEG00000038529 #13 CDC45 (ENSMLEG00000040774) #14 CLDN5 (ENSMLEG00000040620) #15 SEPTIN5 (ENSMLEG00000029088) ENSMLEG00000032135 #18 GNB1L (ENSMLEG00000040958) #19 TXNRD2 (ENSMLEG00000042607) #20 COMT (ENSMLEG00000031497) #23 ARVCF (ENSMLEG00000034443) #24 TANGO2 (ENSMLEG00000038944) #25 DGCR8 (ENSMLEG00000030324) #26 TRMT2A (ENSMLEG00000034259) #28 RANBP1 (ENSMLEG00000038738) ZDHHC8 (ENSMLEG00000002618) #31 CCDC188 (ENSMLEG00000032407) ENSMLEG00000038471 RTN4R (ENSMLEG00000042754) ENSMLEG00000030131 ENSMLEG00000032346 ZNF74 (ENSMLEG00000003487) SCARF2 (ENSMLEG00000034528) KLHL22 (ENSMLEG00000034401) ENSMLEG00000042749 Platyrrhini ANCESTRAL SPECIES 51 ENSGT00390000009387 ENSGT00940000162536 ENSGT00550000074856.o ENSGT00950000183166.a.b ENSGT00550000074919 #10 ENSGT00390000010239 #11 ENSGT00390000002511 #12 ENSGT00390000002408.d #13 ENSGT00390000009662 #14 ENSGT00940000161769 #15 ENSGT00940000159913 ENSGT00530000064244.b #17 ENSGT00940000154816.a.b #18 ENSGT00390000018606 #19 ENSGT00940000158832 #20 ENSGT00940000155317.b #23 ENSGT00940000157027 #24 ENSGT00390000012733 #25 ENSGT00390000015977 #26 ENSGT00530000063723.a #28 ENSGT00900000141073.r ENSGT00940000158044.a #31 ENSGT00940000153380.D ENSGT00940000160711 ENSGT00390000006265.b ENSGT00390000017663.x ENSGT00390000017663.w.a ENSGT00940000161720 ENSGT00940000159668 ENSGT00510000049725 ENSGT00530000069254 Mas night monkey MODERN SPECIES 760 GUCD1 (ENSANAG00000028630) UPB1 (ENSANAG00000034229) ENSANAG00000022282 ADORA2A (ENSANAG00000025931) SPECC1L (ENSANAG00000033753) HIRA (ENSANAG00000037418) #10 MRPL40 (ENSANAG00000026579) #11 C22orf39 (ENSANAG00000021427) #12 UFD1 (ENSANAG00000031464) #13 CDC45 (ENSANAG00000034622) #14 SEPTIN5 (ENSANAG00000025950) GP1BB (ENSANAG00000033423) #17 TBX1 (ENSANAG00000024241) #18 GNB1L (ENSANAG00000015533) #19 TXNRD2 (ENSANAG00000020052) #20 COMT (ENSANAG00000024217) #23 ARVCF (ENSANAG00000029182) #24 TANGO2 (ENSANAG00000035133) #25 DGCR8 (ENSANAG00000013710) #26 TRMT2A (ENSANAG00000035461) #28 ENSANAG00000024454 ZDHHC8 (ENSANAG00000032330) #31 CCDC188 (ENSANAG00000028823) RTN4R (ENSANAG00000032599) ENSANAG00000034686 ENSANAG00000025732 ENSANAG00000031012 ENSANAG00000033260 TMEM121B (ENSANAG00000024835) HDHD5 (ENSANAG00000022048) ENSANAG00000027660 Cebidae ANCESTRAL SPECIES 44 ENSGT00390000009387 ENSGT00940000162536 ENSGT00550000074856.o ENSGT00950000183166.a.b ENSGT00550000074919 #10 ENSGT00390000010239 #11 ENSGT00390000002511 #12 ENSGT00390000002408.d #13 ENSGT00390000009662 #14 ENSGT00940000161769 #15 ENSGT00940000159913 ENSGT00530000064244.b #17 ENSGT00940000154816.a.b #18 ENSGT00390000018606 #19 ENSGT00940000158832 #20 ENSGT00940000155317.b #23 ENSGT00940000157027 #24 ENSGT00390000012733 #25 ENSGT00390000015977 #26 ENSGT00530000063723.a #28 ENSGT00900000141073.r ENSGT00940000158044.a #31 ENSGT00940000153380.D ENSGT00940000160711 ENSGT00390000006265.b ENSGT00390000017663.x ENSGT00390000017663.w.a ENSGT00940000161720 ENSGT00940000159668 ENSGT00510000049725 ENSGT00940000155580.b.b Marmoset MODERN SPECIES ENSCJAG00000001657 CLTCL1 (ENSCJAG00000047873) ENSCJAG00000022184 HIRA (ENSCJAG00000001591) #10 MRPL40 (ENSCJAG00000001584) #11 ENSCJAG00000044605 #12 UFD1 (ENSCJAG00000001566) #13 CDC45 (ENSCJAG00000001523) #14 CLDN5 (ENSCJAG00000021820) #15 SEPTIN5 (ENSCJAG00000031147) GP1BB (ENSCJAG00000001520) #17 ENSCJAG00000055379 TBX1 (ENSCJAG00000014591) #18 GNB1L (ENSCJAG00000037354) #19 TXNRD2 (ENSCJAG00000014546) #20 COMT (ENSCJAG00000014538) #23 ARVCF (ENSCJAG00000014479) #24 TANGO2 (ENSCJAG00000010829) #25 DGCR8 (ENSCJAG00000010780) #26 TRMT2A (ENSCJAG00000010758) #28 RANBP1 (ENSCJAG00000010749) ZDHHC8 (ENSCJAG00000010730) #31 CCDC188 (ENSCJAG00000033357) RTN4R (ENSCJAG00000047001) ENSCJAG00000010707 ENSCJAG00000073511 IL17RA (ENSCJAG00000006350) TMEM121B (ENSCJAG00000047740) HDHD5 (ENSCJAG00000017229) ADA2 (ENSCJAG00000017242) CECR2 (ENSCJAG00000017253) Cebidae_a ANCESTRAL SPECIES 97 ENSGT00940000162226 ENSGT00390000009387 ENSGT00940000162536 ENSGT00550000074856.o ENSGT00950000183166.a.b ENSGT00550000074919 #10 ENSGT00390000010239 #11 ENSGT00390000002511 #12 ENSGT00390000002408.c.b #13 ENSGT00390000009662 #14 ENSGT00940000159913 ENSGT00530000064244.b #17 ENSGT00940000154816.a.b #18 ENSGT00390000018606 #19 ENSGT00940000158832 #20 ENSGT00940000155317.b #23 ENSGT00940000157027 #24 ENSGT00390000012733 #25 ENSGT00390000015977 #26 ENSGT00530000063723.a #28 ENSGT00900000141073.r ENSGT00940000158044.a #31 ENSGT00940000153380.D ENSGT00940000160711 ENSGT00390000006265.b ENSGT00390000017663.x ENSGT00390000017663.w.a ENSGT00940000161720 ENSGT00940000159668 ENSGT00510000049725 ENSGT00940000155580.b.b Capuchin MODERN SPECIES 461 DGCR2 (ENSCCAG00000030344) ENSCCAG00000019387 ESS2 (ENSCCAG00000021557) GSC2 (ENSCCAG00000027479) SLC25A1 (ENSCCAG00000037876) CLTCL1 (ENSCCAG00000018635) HIRA (ENSCCAG00000025576) #10 MRPL40 (ENSCCAG00000037694) #11 C22orf39 (ENSCCAG00000027208) #12 UFD1 (ENSCCAG00000011104) #13 CDC45 (ENSCCAG00000032172) #14 SEPTIN5 (ENSCCAG00000036918) TBX1 (ENSCCAG00000027674) #18 GNB1L (ENSCCAG00000019728) #19 TXNRD2 (ENSCCAG00000034707) #20 COMT (ENSCCAG00000033173) #23 ARVCF (ENSCCAG00000036097) #24 TANGO2 (ENSCCAG00000023952) #25 DGCR8 (ENSCCAG00000036620) #26 TRMT2A (ENSCCAG00000025578) #28 RANBP1 (ENSCCAG00000035621) ZDHHC8 (ENSCCAG00000022342) #31 CCDC188 (ENSCCAG00000028855) RTN4R (ENSCCAG00000018734) ENSCCAG00000032010 ENSCCAG00000025633 Bolivian squirrel monkey MODERN SPECIES 206 ZNF74 (ENSSBOG00000035690) ENSSBOG00000033715 ENSSBOG00000013406 ENSSBOG00000030944 HIRA (ENSSBOG00000021149) #10 ENSSBOG00000013817 MRPL40 (ENSSBOG00000031050) #11 C22orf39 (ENSSBOG00000031146) #12 ENSSBOG00000027274 #13 CDC45 (ENSSBOG00000018948) #14 SEPTIN5 (ENSSBOG00000027910) GP1BB (ENSSBOG00000034037) #17 ENSSBOG00000003899 #18 GNB1L (ENSSBOG00000029828) #19 TXNRD2 (ENSSBOG00000023176) #20 COMT (ENSSBOG00000032251) #23 ARVCF (ENSSBOG00000024306) #24 TANGO2 (ENSSBOG00000024655) #25 DGCR8 (ENSSBOG00000022975) #26 TRMT2A (ENSSBOG00000024388) #28 ENSSBOG00000035235 ZDHHC8 (ENSSBOG00000027282) #31 CCDC188 (ENSSBOG00000022842) RTN4R (ENSSBOG00000032491) ENSSBOG00000034358 ENSSBOG00000034711 USP18 (ENSSBOG00000035368) TUBA8 (ENSSBOG00000021079) PEX26 (ENSSBOG00000025560) MICAL3 (ENSSBOG00000032773) BID (ENSSBOG00000025343) Tarsier MODERN SPECIES 4717 HIRA (ENSTSYG00000003663) #10 MRPL40 (ENSTSYG00000014747) #11 CUNH22orf39 (ENSTSYG00000028865) #12 UFD1 (ENSTSYG00000014750) #13 CDC45 (ENSTSYG00000014754) #14 SEPT5 (ENSTSYG00000037551) ENSTSYG00000032380 #18 GNB1L (ENSTSYG00000034272) #19 TXNRD2 (ENSTSYG00000028849) #20 COMT (ENSTSYG00000013593) #23 ARVCF (ENSTSYG00000010118) #24 TANGO2 (ENSTSYG00000008824) #25 DGCR8 (ENSTSYG00000027809) #26 TRMT2A (ENSTSYG00000027872) #28 RANBP1 (ENSTSYG00000013573) ZDHHC8 (ENSTSYG00000035973) #31 CCDC188 (ENSTSYG00000027690) RTN4R (ENSTSYG00000029385) ENSTSYG00000027023 ENSTSYG00000031265 Strepsirrhini ANCESTRAL SPECIES 39 ENSGT00390000009387 ENSGT00940000162536 ENSGT00550000074856 ENSGT00950000183166.a.b.n ENSGT00550000074919 #10 ENSGT00390000010239 #11 ENSGT00390000002511 #12 ENSGT00390000002408 #13 ENSGT00390000009662 #14 ENSGT00940000161769 #15 ENSGT00940000159913 ENSGT00530000064244.b #17 ENSGT00940000154816.a.b #18 ENSGT00390000018606 #19 ENSGT00940000158832 #20 ENSGT00940000155317.b #23 ENSGT00940000157027 #24 ENSGT00390000012733 #25 ENSGT00390000015977 #26 ENSGT00530000063723.a #28 ENSGT00900000141073 ENSGT00940000158044.a #31 ENSGT00940000153380.D ENSGT00940000160711 ENSGT00390000006265.b ENSGT00390000017663 Bushbaby DUPLICATION Bushbaby MODERN SPECIES 333 TSSK2 (ENSOGAG00000007948) ESS2 (ENSOGAG00000007950) GSC2 (ENSOGAG00000029019) SLC25A1 (ENSOGAG00000001361) CLTCL1 (ENSOGAG00000001362) HIRA (ENSOGAG00000015079) #10 MRPL40 (ENSOGAG00000030071) #11 C22orf39 (ENSOGAG00000015092) #12 UFD1 (ENSOGAG00000015095) #13 CDC45 (ENSOGAG00000015102) #14 CLDN5 (ENSOGAG00000024947) #15 SEPTIN5 (ENSOGAG00000026834) TBX1 (ENSOGAG00000003596) #18 GNB1L (ENSOGAG00000024293) #19 TXNRD2 (ENSOGAG00000029571) #20 ENSOGAG00000026719 #23 ARVCF (ENSOGAG00000007097) #24 TANGO2 (ENSOGAG00000004850) #25 DGCR8 (ENSOGAG00000004851) #26 TRMT2A (ENSOGAG00000009941) #28 RANBP1 (ENSOGAG00000034333) ZDHHC8 (ENSOGAG00000027995) #31 ENSOGAG00000029421 RTN4R (ENSOGAG00000033465) ENSOGAG00000014819 ENSOGAG00000014817 Bushbaby MODERN SPECIES 200 ENSOGAG00000032849 ENSOGAG00000001861 TMA16 (ENSOGAG00000001860) TKTL2 (ENSOGAG00000006953) NPY5R (ENSOGAG00000002993) NPY1R (ENSOGAG00000004417) FSTL5 (ENSOGAG00000000181) ENSOGAG00000026417 #23 RAPGEF2 (ENSOGAG00000011038) FNIP2 (ENSOGAG00000031603) PPID (ENSOGAG00000003317) ETFDH (ENSOGAG00000003315) C4orf46 (ENSOGAG00000034451) RXFP1 (ENSOGAG00000002354) ENSOGAG00000025071 GASK1B (ENSOGAG00000010973) ENSOGAG00000034867 GRIA2 (ENSOGAG00000013773) GLRB (ENSOGAG00000013768) PDGFC (ENSOGAG00000013030) Lemuriformes ANCESTRAL SPECIES 57 ENSGT00390000009387 ENSGT00940000162536 ENSGT00550000074856 ENSGT00950000183166.a.b.n ENSGT00550000074919 #10 ENSGT00390000010239 #11 ENSGT00390000002511 #12 ENSGT00390000002408 #13 ENSGT00390000009662 #14 ENSGT00940000161769 #15 ENSGT00940000159913 ENSGT00530000064244.b #17 ENSGT00940000154816.a.b #18 ENSGT00390000018606 #19 ENSGT00940000158832 #20 ENSGT00940000155317.b #23 ENSGT00940000157027 #24 ENSGT00390000012733 #25 ENSGT00390000015977 #26 ENSGT00530000063723.a #28 ENSGT00900000141073 ENSGT00940000158044.a #31 ENSGT00940000153380.D ENSGT00940000160711 ENSGT00390000006265.b ENSGT00390000017663 Lemuriformes_a ANCESTRAL SPECIES 140 ENSGT00390000009387 ENSGT00940000162536 ENSGT00550000074856 ENSGT00950000183166.a.b.n ENSGT00550000074919 #10 ENSGT00390000010239 #11 ENSGT00390000002511 #12 ENSGT00390000002408 #13 ENSGT00390000009662 #14 ENSGT00940000161769 #15 ENSGT00940000159913 ENSGT00530000064244.b #17 ENSGT00940000154816.a.b #18 ENSGT00390000018606 #19 ENSGT00940000158832 #20 ENSGT00940000155317.b #23 ENSGT00940000157027 #24 ENSGT00390000012733 #25 ENSGT00390000015977 #26 ENSGT00530000063723.a #28 ENSGT00900000141073 ENSGT00940000158044.a #31 ENSGT00940000153380.D ENSGT00940000160711 ENSGT00390000006265.b ENSGT00390000017663 Coquerels sifaka MODERN SPECIES 608 ESS2 (ENSPCOG00000026937) ENSPCOG00000027700 CLTCL1 (ENSPCOG00000020137) HIRA (ENSPCOG00000018283) #10 MRPL40 (ENSPCOG00000014413) #11 C22orf39 (ENSPCOG00000005831) #12 UFD1 (ENSPCOG00000024457) #13 CDC45 (ENSPCOG00000024018) #14 SEPTIN5 (ENSPCOG00000012479) GP1BB (ENSPCOG00000022356) #17 TBX1 (ENSPCOG00000020373) #18 GNB1L (ENSPCOG00000025209) #19 TXNRD2 (ENSPCOG00000026009) #20 COMT (ENSPCOG00000021200) #23 ARVCF (ENSPCOG00000021466) #24 TANGO2 (ENSPCOG00000021728) #25 DGCR8 (ENSPCOG00000025377) #26 TRMT2A (ENSPCOG00000015293) #28 RANBP1 (ENSPCOG00000028183) ZDHHC8 (ENSPCOG00000016265) #31 CCDC188 (ENSPCOG00000022639) RTN4R (ENSPCOG00000013486) ENSPCOG00000017029 ENSPCOG00000016489 ENSPCOG00000017222 ENSPCOG00000021220 CPNE8 (ENSPCOG00000018616) Greater bamboo lemur MODERN SPECIES 416 SEPTIN5 (ENSPSMG00000001186) GP1BB (ENSPSMG00000001216) #17 TBX1 (ENSPSMG00000001290) #18 GNB1L (ENSPSMG00000001334) #19 TXNRD2 (ENSPSMG00000001563) #20 COMT (ENSPSMG00000001658) #23 ARVCF (ENSPSMG00000001850) #24 TANGO2 (ENSPSMG00000002263) #25 DGCR8 (ENSPSMG00000002393) #26 TRMT2A (ENSPSMG00000002486) #28 RANBP1 (ENSPSMG00000002572) ZDHHC8 (ENSPSMG00000002679) #31 CCDC188 (ENSPSMG00000002830) RTN4R (ENSPSMG00000002832) ENSPSMG00000002892 ENSPSMG00000003012 Mouse lemur MODERN SPECIES 131 ESS2 (ENSMICG00000000068) GSC2 (ENSMICG00000043796) SLC25A1 (ENSMICG00000017090) ENSMICG00000026758 HIRA (ENSMICG00000013496) #10 MRPL40 (ENSMICG00000046066) #11 C22orf39 (ENSMICG00000013560) #12 UFD1 (ENSMICG00000013566) #13 CDC45 (ENSMICG00000013589) #14 ENSMICG00000034772 SEPTIN5 (ENSMICG00000028407) GP1BB (ENSMICG00000043691) #17 TBX1 (ENSMICG00000028907) #18 GNB1L (ENSMICG00000034017) #19 TXNRD2 (ENSMICG00000016540) #20 COMT (ENSMICG00000015309) #23 ARVCF (ENSMICG00000015322) #24 TANGO2 (ENSMICG00000005166) #25 DGCR8 (ENSMICG00000030145) #26 TRMT2A (ENSMICG00000017621) #28 RANBP1 (ENSMICG00000017622) ZDHHC8 (ENSMICG00000037526) #31 CCDC188 (ENSMICG00000032879) RTN4R (ENSMICG00000027043) ENSMICG00000004016 ENSMICG00000035160 Euarchontoglires_A ANCESTRAL SPECIES 18 ENSGT00940000162536 ENSGT00550000074856 ENSGT00950000183166.a.b ENSGT00550000074919 #10 ENSGT00390000010239 #11 ENSGT00390000002511 #12 ENSGT00390000002408 #13 ENSGT00390000009662 #14 ENSGT00940000161769 #15 ENSGT00940000159913 ENSGT00530000064244.b #17 ENSGT00940000154816.a.b #18 ENSGT00390000018606 #19 ENSGT00940000166811 ENSGT00940000158832 #20 ENSGT00940000155317.b #23 ENSGT00940000157027 #24 ENSGT00390000012733 #25 ENSGT00390000015977 #26 ENSGT00970000193655 ENSGT00530000063723.a #28 ENSGT00900000141073 ENSGT00940000158044.a #31 ENSGT00940000153380.D ENSGT00940000160711 ENSGT00390000006265.b ENSGT00390000017663 Tree shrew MODERN SPECIES 5851 COMT (ENSTBEG00000013070) #23 Glires ANCESTRAL SPECIES 19 ENSGT00940000162536 ENSGT00550000074856 ENSGT00950000183166.a.b ENSGT00550000074919 #10 ENSGT00390000010239 #11 ENSGT00390000002511 #12 ENSGT00390000002408 #13 ENSGT00390000009662 #14 ENSGT00940000161769 #15 ENSGT00940000159913 ENSGT00530000064244.b #17 ENSGT00940000154816.a.b #18 ENSGT00390000018606 #19 ENSGT00940000166811 ENSGT00940000158832 #20 ENSGT00940000155317.b #23 ENSGT00940000157027 #24 ENSGT00390000012733 #25 ENSGT00390000015977 #26 ENSGT00970000193655 ENSGT00530000063723.a #28 ENSGT00900000141073 ENSGT00940000158044.a #31 ENSGT00940000153380.D ENSGT00940000160711 ENSGT00390000006265.b ENSGT00390000017663 Lagomorpha ANCESTRAL SPECIES 196 ENSGT00940000154816.a.b #18 ENSGT00390000018606 #19 ENSGT00940000166811 ENSGT00940000158832 #20 ENSGT00940000155317.b #23 ENSGT00940000157027 #24 ENSGT00390000012733 #25 ENSGT00390000015977 #26 ENSGT00970000193655 ENSGT00530000063723.a #28 ENSGT00900000141073 ENSGT00940000158044.a #31 ENSGT00940000153380.D ENSGT00390000006265.b ENSGT00390000017663 Pika DUPLICATION Pika DUPLICATION Pika DUPLICATION Pika MODERN SPECIES 5837 ENSOPRG00000013366 #23 Pika MODERN SPECIES 9018 ENSOPRG00000015692 #23 Pika MODERN SPECIES 5165 ENSOPRG00000006100 #23 ARVCF (ENSOPRG00000006105) #24 Pika MODERN SPECIES 4113 ENSOPRG00000015498 #20 ENSOPRG00000015516 #23 Rabbit MODERN SPECIES 559 ENSOCUG00000014466 #18 GNB1L (ENSOCUG00000026037) #19 RTL10 (ENSOCUG00000010326) ARVCF (ENSOCUG00000006299) #24 COMT (ENSOCUG00000006297) #23 TANGO2 (ENSOCUG00000021272) #25 DGCR8 (ENSOCUG00000003612) #26 ENSOCUG00000037773 TRMT2A (ENSOCUG00000021225) #28 RANBP1 (ENSOCUG00000022698) ZDHHC8 (ENSOCUG00000001186) #31 CCDC188 (ENSOCUG00000033404) ENSOCUG00000009391 ENSOCUG00000024558 ENSOCUG00000021383 ENSOCUG00000037703 ENSOCUG00000035127 Rodentia ANCESTRAL SPECIES 20 ENSGT00940000162536 ENSGT00550000074856 ENSGT00950000183166.a.b ENSGT00550000074919 #10 ENSGT00390000010239 #11 ENSGT00390000002511 #12 ENSGT00390000002408 #13 ENSGT00390000009662 #14 ENSGT00940000161769 #15 ENSGT00940000159913 ENSGT00530000064244.b #17 ENSGT00940000154816.a.b #18 ENSGT00390000018606 #19 ENSGT00940000166811 ENSGT00940000158832 #20 ENSGT00940000155317.b #23 ENSGT00940000157027 #24 ENSGT00390000012733 #25 ENSGT00390000015977 #26 ENSGT00970000193655 ENSGT00530000063723.a #28 ENSGT00900000141073 ENSGT00940000158044.a #31 ENSGT00940000153380.D ENSGT00940000160711 ENSGT00390000006265.b ENSGT00390000017663 Rodentia_B ANCESTRAL SPECIES 44 ENSGT00940000162226 ENSGT00390000009387 ENSGT00940000162536 ENSGT00550000074856 ENSGT00550000074919 #10 ENSGT00390000010239 #11 ENSGT00390000002511 #12 ENSGT00390000002408 #13 ENSGT00390000009662 #14 ENSGT00940000161769 #15 ENSGT00940000159913 ENSGT00530000064244.b #17 ENSGT00940000154816.a.b #18 ENSGT00390000018606 #19 ENSGT00940000158832 #20 ENSGT00940000155317.b #23 ENSGT00940000157027 #24 ENSGT00390000012733 #25 ENSGT00390000015977 #26 ENSGT00970000193655 ENSGT00530000063723.a #28 ENSGT00900000141073 ENSGT00940000158044.a #31 ENSGT00940000153380.D ENSGT00940000160711 ENSGT00390000006265.b ENSGT00390000017663 Myomorpha ANCESTRAL SPECIES 65 ENSGT00550000074919 #10 ENSGT00390000010239 #11 ENSGT00390000002511 #12 ENSGT00390000002408 #13 ENSGT00390000009662 #14 ENSGT00940000161769 #15 ENSGT00940000159913 ENSGT00530000064244.b #17 ENSGT00940000154816.a.b #18 ENSGT00390000018606 #19 ENSGT00940000158832 #20 ENSGT00940000155317.b #23 ENSGT00940000157027 #24 ENSGT00390000012733 #25 ENSGT00390000015977 #26 ENSGT00970000193655 ENSGT00530000063723.a #28 ENSGT00900000141073 ENSGT00940000158044.a #31 ENSGT00940000153380.D ENSGT00940000160711 ENSGT00390000006265.b ENSGT00390000017663 Muroidea ANCESTRAL SPECIES 61 ENSGT00550000074919 #10 ENSGT00390000010239 #11 ENSGT00390000002511 #12 ENSGT00390000002408 #13 ENSGT00390000009662 #14 ENSGT00940000161769 #15 ENSGT00940000159913 ENSGT00530000064244.b #17 ENSGT00940000154816.a.b #18 ENSGT00390000018606 #19 ENSGT00940000158832 #20 ENSGT00940000155317.b #23 ENSGT00940000157027 #24 ENSGT00390000012733 #25 ENSGT00390000015977 #26 ENSGT00970000193655 ENSGT00530000063723.a #28 ENSGT00900000141073 ENSGT00940000158044.a #31 ENSGT00940000153380.D ENSGT00940000160711 ENSGT00390000006265.b ENSGT00390000017663 ENSGT00550000074856 ENSGT00940000162536 ENSGT00390000009387 ENSGT00940000162226 Muroidea_A ANCESTRAL SPECIES 17 ENSGT00940000154345.b ENSGT00990000203899 ENSGT00940000159676 ENSGT00940000164015 ENSGT00550000074919 #10 ENSGT00390000010239 #11 ENSGT00390000002511 #12 ENSGT00390000002408 #13 ENSGT00390000009662 #14 ENSGT00940000161769 #15 ENSGT00940000159913 ENSGT00530000064244.b #17 ENSGT00940000154816.a.b #18 ENSGT00390000018606 #19 ENSGT00940000158832 #20 ENSGT00940000155317.b #23 ENSGT00940000157027 #24 ENSGT00390000012733 #25 ENSGT00390000015977 #26 ENSGT00970000193655 ENSGT00530000063723.a #28 ENSGT00900000141073 ENSGT00940000158044.a #31 ENSGT00940000153380.D ENSGT00940000160711 ENSGT00390000006265.b ENSGT00390000017663 ENSGT00550000074856 ENSGT00940000162536 ENSGT00390000009387 ENSGT00940000162226 Cricetidae ANCESTRAL SPECIES 16 ENSGT00940000163715.a ENSGT00990000203899 ENSGT00940000159676 ENSGT00940000164015 ENSGT00550000074919 #10 ENSGT00390000010239 #11 ENSGT00390000002511 #12 ENSGT00390000002408 #13 ENSGT00390000009662 #14 ENSGT00940000161769 #15 ENSGT00940000159913 ENSGT00530000064244.b #17 ENSGT00940000154816.a.b #18 ENSGT00390000018606 #19 ENSGT00940000158832 #20 ENSGT00940000155317.b #23 ENSGT00940000157027 #24 ENSGT00390000012733 #25 ENSGT00390000015977 #26 ENSGT00970000193655 ENSGT00530000063723.a #28 ENSGT00900000141073 ENSGT00940000158044.a #31 ENSGT00940000153380.D ENSGT00940000160711 ENSGT00390000006265.b ENSGT00390000017663 ENSGT00550000074856 ENSGT00940000162536 ENSGT00390000009387 ENSGT00940000162226 Cricetidae_B ANCESTRAL SPECIES 13 ENSGT01090000259995.b.b.b ENSGT01090000259995.b.b.a.a.b ENSGT01090000259995.b.b.a.a.a.g ENSGT01090000259995.b.a.a.a.a.a.a ENSGT00550000074919 #10 ENSGT00390000010239 #11 ENSGT00390000002511 #12 ENSGT00390000002408 #13 ENSGT00390000009662 #14 ENSGT00940000161769 #15 ENSGT00940000159913 ENSGT00530000064244.b #17 ENSGT00940000154816.a.b #18 ENSGT00390000018606 #19 ENSGT00940000158832 #20 ENSGT00940000155317.b #23 ENSGT00940000157027 #24 ENSGT00390000012733 #25 ENSGT00390000015977 #26 ENSGT00970000193655 ENSGT00530000063723.a #28 ENSGT00900000141073 ENSGT00940000158044.a #31 ENSGT00940000153380.D ENSGT00940000160711 ENSGT00390000006265.b ENSGT00390000017663 ENSGT00550000074856 ENSGT00940000162536 ENSGT00390000009387 ENSGT00940000162226 Northern American deer mouse DUPLICATION Northern American deer mouse MODERN SPECIES 3 ENSPEMG00000026657 ENSPEMG00000027648 ENSPEMG00000026621 ENSPEMG00000011377 #10 Mrpl40 (ENSPEMG00000017933) #11 2510002D24Rik (ENSPEMG00000003609) #12 Ufd1 (ENSPEMG00000011595) #13 Cdc45 (ENSPEMG00000004377) #14 Cldn5 (ENSPEMG00000000920) #15 Septin5 (ENSPEMG00000013636) Gp1bb (ENSPEMG00000016143) #17 Tbx1 (ENSPEMG00000005836) #18 Gnb1l (ENSPEMG00000009247) #19 ENSPEMG00000030443 #23 Txnrd2 (ENSPEMG00000000594) #20 ENSPEMG00000024477 #23 Arvcf (ENSPEMG00000014202) #24 Tango2 (ENSPEMG00000012488) #25 Dgcr8 (ENSPEMG00000018266) #26 ENSPEMG00000019211 Trmt2a (ENSPEMG00000011013) #28 Ranbp1 (ENSPEMG00000019257) Zdhhc8 (ENSPEMG00000012434) #31 ENSPEMG00000005605 Rtn4r (ENSPEMG00000014362) Prodh (ENSPEMG00000005099) Dgcr6 (ENSPEMG00000012492) ENSPEMG00000010426 Slc25a1 (ENSPEMG00000022415) Gsc2 (ENSPEMG00000022039) Ess2 (ENSPEMG00000021417) Northern American deer mouse MODERN SPECIES 3 ENSPEMG00000026643 ENSPEMG00000030529 ENSPEMG00000026657 ENSPEMG00000027648 ENSPEMG00000026621 ENSPEMG00000011377 #10 Mrpl40 (ENSPEMG00000017933) #11 2510002D24Rik (ENSPEMG00000003609) #12 Ufd1 (ENSPEMG00000011595) #13 Cdc45 (ENSPEMG00000004377) #14 Cldn5 (ENSPEMG00000000920) #15 Septin5 (ENSPEMG00000013636) Gp1bb (ENSPEMG00000016143) #17 Tbx1 (ENSPEMG00000005836) #18 Gnb1l (ENSPEMG00000009247) #19 ENSPEMG00000030443 #23 Txnrd2 (ENSPEMG00000000594) #20 ENSPEMG00000024477 #23 Arvcf (ENSPEMG00000014202) #24 Tango2 (ENSPEMG00000012488) #25 Dgcr8 (ENSPEMG00000018266) #26 ENSPEMG00000019211 Trmt2a (ENSPEMG00000011013) #28 Ranbp1 (ENSPEMG00000019257) Zdhhc8 (ENSPEMG00000012434) #31 ENSPEMG00000005605 Rtn4r (ENSPEMG00000014362) Prodh (ENSPEMG00000005099) Dgcr6 (ENSPEMG00000012492) ENSPEMG00000010426 Slc25a1 (ENSPEMG00000022415) Prairie vole MODERN SPECIES 151 Septin5 (ENSMOCG00000000071) Gp1bb (ENSMOCG00000019806) #17 Tbx1 (ENSMOCG00000014698) #18 Gnb1l (ENSMOCG00000001278) #19 ENSMOCG00000004002 Txnrd2 (ENSMOCG00000000725) #20 Comt (ENSMOCG00000012717) #23 Arvcf (ENSMOCG00000014542) #24 Tango2 (ENSMOCG00000008779) #25 Dgcr8 (ENSMOCG00000014743) #26 Trmt2a (ENSMOCG00000002597) #28 Ranbp1 (ENSMOCG00000000658) Zdhhc8 (ENSMOCG00000012177) #31 ENSMOCG00000017067 Rtn4r (ENSMOCG00000018155) Prodh (ENSMOCG00000019417) Dgcr6 (ENSMOCG00000020153) ENSMOCG00000010728 ENSMOCG00000012573 Gsc2 (ENSMOCG00000000116) Ess2 (ENSMOCG00000019116) Tssk2 (ENSMOCG00000002817) Cricetinae ANCESTRAL SPECIES 10 ENSGT00940000163715.a ENSGT00990000203899 ENSGT00940000159676 ENSGT00940000164015 ENSGT00550000074919 #10 ENSGT00390000010239 #11 ENSGT00390000002511 #12 ENSGT00390000002408 #13 ENSGT00390000009662 #14 ENSGT00940000161769 #15 ENSGT00940000159913 ENSGT00530000064244.b #17 ENSGT00940000154816.a.b #18 ENSGT00390000018606 #19 ENSGT00940000158832 #20 ENSGT00940000155317.b #23 ENSGT00940000157027 #24 ENSGT00390000012733 #25 ENSGT00390000015977 #26 ENSGT00970000193655 ENSGT00530000063723.a #28 ENSGT00900000141073 ENSGT00940000158044.a #31 ENSGT00940000153380.D ENSGT00940000160711 ENSGT00390000006265.b ENSGT00390000017663 ENSGT00550000074856 ENSGT00940000162536 ENSGT00390000009387 ENSGT00940000162226 Chinese hamster chok1gshd MODERN SPECIES 382 ENSCGRG00001002027 ENSCGRG00001002357 ENSCGRG00001010395 ENSCGRG00001009833 Hira (ENSCGRG00001019509) #10 Mrpl40 (ENSCGRG00001019957) #11 2510002D24Rik (ENSCGRG00001013807) #12 ENSCGRG00001016282 #13 Cdc45 (ENSCGRG00001017733) #14 Cldn5 (ENSCGRG00001010860) #15 Septin5 (ENSCGRG00001018409) Gp1bb (ENSCGRG00001011927) #17 Tbx1 (ENSCGRG00001018936) #18 Gnb1l (ENSCGRG00001011168) #19 Txnrd2 (ENSCGRG00001018147) #20 Comt (ENSCGRG00001019692) #23 Arvcf (ENSCGRG00001008113) #24 Tango2 (ENSCGRG00001012308) #25 Dgcr8 (ENSCGRG00001000935) #26 ENSCGRG00001010886 Trmt2a (ENSCGRG00001016592) #28 Ranbp1 (ENSCGRG00001019070) Zdhhc8 (ENSCGRG00001015576) #31 ENSCGRG00001012235 Rtn4r (ENSCGRG00001002500) Prodh (ENSCGRG00001012080) Dgcr6 (ENSCGRG00001004677) Slc25a1 (ENSCGRG00001024096) Gsc2 (ENSCGRG00001023953) Ess2 (ENSCGRG00001017846) Tssk2 (ENSCGRG00001010561) Golden Hamster MODERN SPECIES 690 Dnm1l (ENSMAUG00000010409) Fgd4 (ENSMAUG00000009523) Mzt2 (ENSMAUG00000011034) Hira (ENSMAUG00000013816) #10 Mrpl40 (ENSMAUG00000015350) #11 2510002D24Rik (ENSMAUG00000006315) #12 Ufd1 (ENSMAUG00000011444) #13 Cdc45 (ENSMAUG00000014100) #14 Cldn5 (ENSMAUG00000017811) #15 Septin5 (ENSMAUG00000014786) Gp1bb (ENSMAUG00000016778) #17 Tbx1 (ENSMAUG00000019560) #18 Gnb1l (ENSMAUG00000000218) #19 ENSMAUG00000016392 Txnrd2 (ENSMAUG00000001013) #20 Comt (ENSMAUG00000013288) #23 Arvcf (ENSMAUG00000010039) #24 Tango2 (ENSMAUG00000019754) #25 Dgcr8 (ENSMAUG00000000517) #26 Trmt2a (ENSMAUG00000005655) #28 Ranbp1 (ENSMAUG00000000530) Zdhhc8 (ENSMAUG00000000570) #31 ENSMAUG00000001223 Rtn4r (ENSMAUG00000004777) Prodh (ENSMAUG00000013845) Dgcr6 (ENSMAUG00000017452) ENSMAUG00000018193 Slc25a1 (ENSMAUG00000019420) Gsc2 (ENSMAUG00000012679) Ess2 (ENSMAUG00000012831) Tssk2 (ENSMAUG00000018133) Murinae ANCESTRAL SPECIES 13 ENSGT00940000161640 ENSGT00940000153120.k.a.a ENSGT00940000153307.d.b ENSGT00940000153307.d.a.a ENSGT00550000074919 #10 ENSGT00390000010239 #11 ENSGT00390000002511 #12 ENSGT00390000002408 #13 ENSGT00390000009662 #14 ENSGT00940000161769 #15 ENSGT00940000159913 ENSGT00530000064244.b #17 ENSGT00940000154816.a.b #18 ENSGT00390000018606 #19 ENSGT00940000158832 #20 ENSGT00940000155317.b #23 ENSGT00940000157027 #24 ENSGT00390000012733 #25 ENSGT00390000015977 #26 ENSGT00970000193655 ENSGT00530000063723.a #28 ENSGT00900000141073 ENSGT00940000158044.a #31 ENSGT00940000153380.D ENSGT00940000160711 ENSGT00390000006265.b ENSGT00390000017663 ENSGT00550000074856 ENSGT00940000162536 ENSGT00390000009387 ENSGT00940000162226 Mus ANCESTRAL SPECIES 13 ENSGT00950000186499 ENSGT00940000153307.d.b ENSGT00940000153307.d.a.a ENSGT00550000074919 #10 ENSGT00390000010239 #11 ENSGT00390000002511.a #12 ENSGT00390000002408 #13 ENSGT00390000009662 #14 ENSGT00940000161769 #15 ENSGT00940000159913 ENSGT00530000064244.b #17 ENSGT00940000154816.a.b #18 ENSGT00940000167732 ENSGT00390000018606 #19 ENSGT00940000158832 #20 ENSGT00940000155317.b #23 ENSGT00940000157027 #24 ENSGT00390000012733 #25 ENSGT00390000015977 #26 ENSGT00970000193655 ENSGT00530000063723.a #28 ENSGT00900000141073 ENSGT00940000158044.a #31 ENSGT00940000153380.D ENSGT00940000160711 ENSGT00390000006265.b ENSGT00390000017663 ENSGT00550000074856 ENSGT00940000162536 ENSGT00390000009387 ENSGT00940000162226 Mus_A ANCESTRAL SPECIES 18 ENSGT00950000186516 ENSGT00940000153307.d.b ENSGT00940000153307.d.a.a ENSGT00550000074919 #10 ENSGT00390000010239 #11 ENSGT00390000002511.a #12 ENSGT00390000002408 #13 ENSGT00390000009662 #14 ENSGT00940000161769 #15 ENSGT00940000159913 ENSGT00530000064244.b #17 ENSGT00940000154816.a.b #18 ENSGT00940000167732 ENSGT00390000018606 #19 ENSGT00940000158832 #20 ENSGT00940000155317.b #23 ENSGT00940000157027 #24 ENSGT00390000012733 #25 ENSGT00390000015977 #26 ENSGT00970000193655 ENSGT00530000063723.a #28 ENSGT00900000141073 ENSGT00940000158044.a #31 ENSGT00940000153380.D ENSGT00940000160711 ENSGT00390000006265.b ENSGT00390000017663 ENSGT00550000074856 ENSGT00940000162536 ENSGT00390000009387 ENSGT00940000162226 Ryukyu mouse MODERN SPECIES 7 Iglj1 (MGP_CAROLIEiJ_G0000022) Iglc1 (MGP_CAROLIEiJ_G0000010) MGP_CAROLIEiJ_G0020558 #10 Mrpl40 (MGP_CAROLIEiJ_G0020557) #11 MGP_CAROLIEiJ_G0020556 #12 2510002D24Rik (MGP_CAROLIEiJ_G0020555) #12 Ufd1 (MGP_CAROLIEiJ_G0020554) #13 Cdc45 (MGP_CAROLIEiJ_G0020553) #14 Cldn5 (MGP_CAROLIEiJ_G0020552) #15 Septin5 (MGP_CAROLIEiJ_G0020551) Gp1bb (MGP_CAROLIEiJ_G0020550) #17 Tbx1 (MGP_CAROLIEiJ_G0020549) #18 MGP_CAROLIEiJ_G0020548 MGP_CAROLIEiJ_G0020547 #19 Txnrd2 (MGP_CAROLIEiJ_G0020546) #20 Comt (MGP_CAROLIEiJ_G0020545) #23 Arvcf (MGP_CAROLIEiJ_G0020544) #24 MGP_CAROLIEiJ_G0020543 #25 Dgcr8 (MGP_CAROLIEiJ_G0020542) #26 Trmt2a (MGP_CAROLIEiJ_G0020541) #28 Ranbp1 (MGP_CAROLIEiJ_G0020540) Zdhhc8 (MGP_CAROLIEiJ_G0020539) #31 MGP_CAROLIEiJ_G0020538 Rtn4r (MGP_CAROLIEiJ_G0020537) Prodh (MGP_CAROLIEiJ_G0020536) Dgcr6 (MGP_CAROLIEiJ_G0020535) Slc25a1 (MGP_CAROLIEiJ_G0020534) Gsc2 (MGP_CAROLIEiJ_G0020533) Ess2 (MGP_CAROLIEiJ_G0020532) MGP_CAROLIEiJ_G0020531 MGP_CAROLIEiJ_G0020530 Mus_B ANCESTRAL SPECIES 18 ENSGT00950000186516 ENSGT00940000153307.d.b.a ENSGT00940000153307.d.a.a ENSGT00550000074919 #10 ENSGT00390000010239 #11 ENSGT00390000002511.a #12 ENSGT00390000002408 #13 ENSGT00390000009662 #14 ENSGT00940000161769 #15 ENSGT00940000159913 ENSGT00530000064244.b #17 ENSGT00940000154816.a.b #18 ENSGT00940000167732 ENSGT00390000018606 #19 ENSGT00940000158832 #20 ENSGT00940000155317.b #23 ENSGT00940000157027 #24 ENSGT00390000012733 #25 ENSGT00390000015977 #26 ENSGT00970000193655 ENSGT00530000063723.a #28 ENSGT00900000141073 ENSGT00940000158044.a #31 ENSGT00940000153380.D ENSGT00940000160711 ENSGT00390000006265.b ENSGT00390000017663 ENSGT00550000074856 ENSGT00940000162536 ENSGT00390000009387 ENSGT00940000162226 Mouse MODERN SPECIES 7 Iglc3 (ENSMUSG00000105547) Iglj1 (ENSMUSG00000106668) Iglc1 (ENSMUSG00000105906) Hira (ENSMUSG00000022702) #10 Mrpl40 (ENSMUSG00000022706) #11 2510002D24Rik (ENSMUSG00000071632) #12 Ufd1 (ENSMUSG00000005262) #13 Cdc45 (ENSMUSG00000000028) #14 Cldn5 (ENSMUSG00000041378) #15 Septin5 (ENSMUSG00000072214) Gm49601 (ENSMUSG00000116594) Gp1bb (ENSMUSG00000050761) #17 Tbx1 (ENSMUSG00000009097) #18 Gnb1l (ENSMUSG00000000884) #19 Txnrd2 (ENSMUSG00000075704) #20 Comt (ENSMUSG00000000326) #23 Arvcf (ENSMUSG00000118669) #24 Tango2 (ENSMUSG00000013539) #25 Dgcr8 (ENSMUSG00000022718) #26 Trmt2a (ENSMUSG00000022721) #28 Ranbp1 (ENSMUSG00000005732) Zdhhc8 (ENSMUSG00000060166) #31 Ccdc188 (ENSMUSG00000090777) Rtn4r (ENSMUSG00000043811) Prodh (ENSMUSG00000003526) Dgcr6 (ENSMUSG00000003531) Vpreb1b (ENSMUSG00000059280) Slc25a1 (ENSMUSG00000003528) Gsc2 (ENSMUSG00000022738) Ess2 (ENSMUSG00000003527) Tssk2 (ENSMUSG00000045521) Mus_C ANCESTRAL SPECIES 12 ENSGT00950000186516 ENSGT00950000186499 ENSGT00940000153307.d.a.b ENSGT00550000074919 #10 ENSGT00390000010239 #11 ENSGT00390000002511.a #12 ENSGT00390000002408 #13 ENSGT00390000009662 #14 ENSGT00940000161769 #15 ENSGT00940000159913 ENSGT00530000064244.b #17 ENSGT00940000154816.a.b #18 ENSGT00940000167732 ENSGT00390000018606 #19 ENSGT00940000158832 #20 ENSGT00940000155317.b #23 ENSGT00940000157027 #24 ENSGT00390000012733 #25 ENSGT00390000015977 #26 ENSGT00970000193655 ENSGT00530000063723.a #28 ENSGT00900000141073 ENSGT00940000158044.a #31 ENSGT00940000153380.D ENSGT00940000160711 ENSGT00390000006265.b ENSGT00390000017663 ENSGT00550000074856 ENSGT00940000162536 ENSGT00390000009387 ENSGT00940000162226 Steppe mouse MODERN SPECIES 3260 ENSMSIG00000022991 ENSMSIG00000022974 Hira (ENSMSIG00000022901) #10 Mrpl40 (ENSMSIG00000022880) #11 2510002D24Rik (ENSMSIG00000022858) #12 Ufd1 (ENSMSIG00000022828) #13 Cdc45 (ENSMSIG00000022750) #14 Cldn5 (ENSMSIG00000022737) #15 ENSMSIG00000022731 ENSMSIG00000022717 Septin5 (ENSMSIG00000022599) Gp1bb (ENSMSIG00000022590) #17 ENSMSIG00000022581 #18 Gnb1l (ENSMSIG00000022539) #19 Txnrd2 (ENSMSIG00000020857) #20 Comt (ENSMSIG00000020818) #23 Arvcf (ENSMSIG00000020598) #24 Tango2 (ENSMSIG00000020557) #25 Dgcr8 (ENSMSIG00000020457) #26 ENSMSIG00000020450 Trmt2a (ENSMSIG00000020306) #28 ENSMSIG00000020271 Zdhhc8 (ENSMSIG00000020222) #31 Ccdc188 (ENSMSIG00000020194) Rtn4r (ENSMSIG00000020177) Prodh (ENSMSIG00000020147) Dgcr6 (ENSMSIG00000020095) ENSMSIG00000020089 Vpreb1b (ENSMSIG00000020055) Slc25a1 (ENSMSIG00000020029) ENSMSIG00000020018 spretus MODERN SPECIES 7 MGP_SPRETEiJ_G0000011 MGP_SPRETEiJ_G0000010 Hira (MGP_SPRETEiJ_G0021453) #10 Mrpl40 (MGP_SPRETEiJ_G0021452) #11 MGP_SPRETEiJ_G0021451 #12 MGP_SPRETEiJ_G0021450 Ufd1 (MGP_SPRETEiJ_G0021449) #13 Cldn5 (MGP_SPRETEiJ_G0021448) #15 Cdc45 (MGP_SPRETEiJ_G0021447) #14 Septin5 (MGP_SPRETEiJ_G0021446) Gp1bb (MGP_SPRETEiJ_G0021445) #17 Tbx1 (MGP_SPRETEiJ_G0021444) #18 MGP_SPRETEiJ_G0021443 MGP_SPRETEiJ_G0021442 #19 Txnrd2 (MGP_SPRETEiJ_G0021441) #20 Comt (MGP_SPRETEiJ_G0021440) #23 Arvcf (MGP_SPRETEiJ_G0021439) #24 Tango2 (MGP_SPRETEiJ_G0021438) #25 Dgcr8 (MGP_SPRETEiJ_G0021437) #26 Trmt2a (MGP_SPRETEiJ_G0021436) #28 Ranbp1 (MGP_SPRETEiJ_G0021435) Zdhhc8 (MGP_SPRETEiJ_G0021434) #31 MGP_SPRETEiJ_G0021433 Rtn4r (MGP_SPRETEiJ_G0021432) Prodh (MGP_SPRETEiJ_G0021431) Dgcr6 (MGP_SPRETEiJ_G0021430) Slc25a1 (MGP_SPRETEiJ_G0021429) Gsc2 (MGP_SPRETEiJ_G0021428) Ess2 (MGP_SPRETEiJ_G0021427) Tssk2 (MGP_SPRETEiJ_G0021426) Tssk1 (MGP_SPRETEiJ_G0021425) Shrew mouse MODERN SPECIES 3 MGP_PahariEiJ_G0000004 MGP_PahariEiJ_G0000003 Hira (MGP_PahariEiJ_G0016263) #10 Mrpl40 (MGP_PahariEiJ_G0016262) #11 MGP_PahariEiJ_G0016261 #12 2510002D24Rik (MGP_PahariEiJ_G0016260) #12 Ufd1 (MGP_PahariEiJ_G0016259) #13 Cdc45 (MGP_PahariEiJ_G0016258) #14 Cldn5 (MGP_PahariEiJ_G0016257) #15 Septin5 (MGP_PahariEiJ_G0016256) Gp1bb (MGP_PahariEiJ_G0016255) #17 Tbx1 (MGP_PahariEiJ_G0016254) #18 MGP_PahariEiJ_G0016253 MGP_PahariEiJ_G0016252 #19 Txnrd2 (MGP_PahariEiJ_G0016251) #20 Comt (MGP_PahariEiJ_G0016250) #23 Arvcf (MGP_PahariEiJ_G0016249) #24 MGP_PahariEiJ_G0016248 #25 Dgcr8 (MGP_PahariEiJ_G0016247) #26 Trmt2a (MGP_PahariEiJ_G0016246) #28 Ranbp1 (MGP_PahariEiJ_G0016245) Zdhhc8 (MGP_PahariEiJ_G0016244) #31 MGP_PahariEiJ_G0016243 Rtn4r (MGP_PahariEiJ_G0016242) Prodh (MGP_PahariEiJ_G0016241) Dgcr6 (MGP_PahariEiJ_G0016240) Slc25a1 (MGP_PahariEiJ_G0016239) Gsc2 (MGP_PahariEiJ_G0016238) Ess2 (MGP_PahariEiJ_G0016237) Tssk2 (MGP_PahariEiJ_G0016236) Tssk1 (MGP_PahariEiJ_G0016235) Rat MODERN SPECIES 2 RGD1564318 (ENSRNOG00000050000) ENSRNOG00000070540 Iglc1 (ENSRNOG00000058590) Hira (ENSRNOG00000045770) #10 Mrpl40 (ENSRNOG00000049686) #11 LOC498122 (ENSRNOG00000048861) Ufd1 (ENSRNOG00000047394) #13 Cdc45 (ENSRNOG00000070046) #14 Cdc45 (ENSRNOG00000050071) #15 LOC100362453 (ENSRNOG00000001893) Septin5 (ENSRNOG00000029912) Gp1bb (ENSRNOG00000046981) #17 Tbx1 (ENSRNOG00000001892) #18 Gnb1l (ENSRNOG00000001891) #19 Txnrd2 (ENSRNOG00000001890) #20 Comt (ENSRNOG00000001889) #23 Arvcf (ENSRNOG00000001888) #24 Tango2 (ENSRNOG00000030245) #25 Dgcr8 (ENSRNOG00000001886) #26 Trmt2a (ENSRNOG00000001885) #28 ENSRNOG00000066515 Ranbp1 (ENSRNOG00000001884) Zdhhc8 (ENSRNOG00000021891) #31 Ccdc188 (ENSRNOG00000042711) Rtn4r (ENSRNOG00000030920) Prodh (ENSRNOG00000000281) Dgcr6 (ENSRNOG00000001880) Vpreb2 (ENSRNOG00000001839) Slc25a1 (ENSRNOG00000038001) Gsc2 (ENSRNOG00000000282) Ess2 (ENSRNOG00000000283) Upper Galilee mountains blind mole rat MODERN SPECIES 1216 Hira (ENSNGAG00000001112) #10 Mrpl40 (ENSNGAG00000000304) #11 2510002D24Rik (ENSNGAG00000000172) #12 Ufd1 (ENSNGAG00000017827) #13 Cdc45 (ENSNGAG00000015793) #14 Cldn5 (ENSNGAG00000012973) #15 Septin5 (ENSNGAG00000013782) Gp1bb (ENSNGAG00000013250) #17 Tbx1 (ENSNGAG00000013088) #18 Gnb1l (ENSNGAG00000012919) #19 Txnrd2 (ENSNGAG00000012955) #20 Comt (ENSNGAG00000007480) #23 Arvcf (ENSNGAG00000012527) #24 Tango2 (ENSNGAG00000010731) #25 Dgcr8 (ENSNGAG00000003283) #26 Trmt2a (ENSNGAG00000015041) #28 Ranbp1 (ENSNGAG00000013821) Zdhhc8 (ENSNGAG00000012851) #31 ENSNGAG00000012719 Rtn4r (ENSNGAG00000012587) Prodh (ENSNGAG00000011182) Dgcr6 (ENSNGAG00000009889) ENSNGAG00000009497 ENSNGAG00000008705 Slc25a1 (ENSNGAG00000016904) Gsc2 (ENSNGAG00000016581) Ess2 (ENSNGAG00000015992) Lesser Egyptian jerboa MODERN SPECIES 194 Ppm1f (ENSJJAG00000019897) Top3b (ENSJJAG00000019346) ENSJJAG00000019063 Hira (ENSJJAG00000018442) #10 Mrpl40 (ENSJJAG00000017905) #11 2510002D24Rik (ENSJJAG00000017728) #12 Ufd1 (ENSJJAG00000016109) #13 Cdc45 (ENSJJAG00000015106) #14 Cldn5 (ENSJJAG00000013151) #15 ENSJJAG00000013111 Septin5 (ENSJJAG00000000091) Gp1bb (ENSJJAG00000023646) #17 Tbx1 (ENSJJAG00000023527) #18 Gnb1l (ENSJJAG00000023212) #19 Txnrd2 (ENSJJAG00000019775) #20 Comt (ENSJJAG00000017314) #23 Arvcf (ENSJJAG00000015525) #24 Tango2 (ENSJJAG00000014545) #25 Dgcr8 (ENSJJAG00000014171) #26 Trmt2a (ENSJJAG00000013116) #28 ENSJJAG00000011468 Zdhhc8 (ENSJJAG00000010431) #31 ENSJJAG00000018048 Rtn4r (ENSJJAG00000017834) Prodh (ENSJJAG00000017416) Dgcr6 (ENSJJAG00000014265) Kangaroo rat MODERN SPECIES 460 Tssk2 (ENSDORG00000003783) Ess2 (ENSDORG00000003784) Gsc2 (ENSDORG00000003785) Slc25a1 (ENSDORG00000025499) Hira (ENSDORG00000002948) #10 Mrpl40 (ENSDORG00000002949) #11 ENSDORG00000006169 Ufd1 (ENSDORG00000006171) #13 Cdc45 (ENSDORG00000006172) #14 Cldn5 (ENSDORG00000028746) #15 Septin5 (ENSDORG00000013930) Gp1bb (ENSDORG00000013931) #17 ENSDORG00000027365 Gnb1l (ENSDORG00000000071) #19 Txnrd2 (ENSDORG00000011646) #20 Comt (ENSDORG00000003867) #23 Arvcf (ENSDORG00000003863) #24 Tango2 (ENSDORG00000010892) #25 Dgcr8 (ENSDORG00000028551) #26 Trmt2a (ENSDORG00000011316) #28 ENSDORG00000011317 Zdhhc8 (ENSDORG00000011318) #31 ENSDORG00000030162 Rtn4r (ENSDORG00000012342) Prodh (ENSDORG00000005740) Dgcr6 (ENSDORG00000005738) Zfp280b (ENSDORG00000000007) Gnaz (ENSDORG00000027110) ENSDORG00000011447 Rodentia_A ANCESTRAL SPECIES 19 ENSGT00940000162536 ENSGT00550000074856 ENSGT00950000183166.a.b ENSGT00550000074919 #10 ENSGT00390000010239 #11 ENSGT00390000002511 #12 ENSGT00390000002408 #13 ENSGT00390000009662 #14 ENSGT00940000161769 #15 ENSGT00940000159913 ENSGT00530000064244.b #17 ENSGT00940000154816.a.b #18 ENSGT00390000018606 #19 ENSGT00940000166811 ENSGT00940000158832 #20 ENSGT00940000155317.b #23 ENSGT00940000157027 #24 ENSGT00390000012733 #25 ENSGT00390000015977 #26 ENSGT00530000063723.a #28 ENSGT00940000154389.b #30 ENSGT00970000193655 ENSGT00900000141073 ENSGT00940000158044.a #31 ENSGT00940000153380.D ENSGT00940000160711 ENSGT00390000006265.b ENSGT00390000017663 Hystricomorpha ANCESTRAL SPECIES ENSGT00390000009387 ENSGT00940000162536 ENSGT00550000074856 ENSGT00950000183166.a.b ENSGT00550000074919 #10 ENSGT00390000010239 #11 ENSGT00390000002511 #12 ENSGT00390000002408 #13 ENSGT00390000009662 #14 ENSGT00940000161769 #15 ENSGT00940000159913 ENSGT00530000064244.b #17 ENSGT00940000154816.a.b #18 ENSGT00390000018606 #19 ENSGT00940000158832 #20 ENSGT00940000155317.b #23 ENSGT00940000157027 #24 ENSGT00390000012733 #25 ENSGT00390000015977 #26 ENSGT00530000063723.a #28 ENSGT00900000141073 ENSGT00940000158044.a #31 ENSGT00940000153380.D ENSGT00940000160711 ENSGT00390000006265.b ENSGT00390000017663 ENSGT00940000162280 ENSGT00940000159978 ENSGT00950000183203.d.h ENSGT00940000153654 ENSGT00390000002575 Hystricomorpha_a ANCESTRAL SPECIES 2 ENSGT00390000009387 ENSGT00940000162536 ENSGT00550000074856 ENSGT00950000183166.a.b ENSGT00550000074919 #10 ENSGT00390000010239 #11 ENSGT00390000002511 #12 ENSGT00390000002408 #13 ENSGT00390000009662 #14 ENSGT00940000161769 #15 ENSGT00940000159913 ENSGT00530000064244.b #17 ENSGT00940000154816.a.b #18 ENSGT00390000018606 #19 ENSGT00940000158832 #20 ENSGT00940000155317.b #23 ENSGT00940000157027 #24 ENSGT00390000012733 #25 ENSGT00390000015977 #26 ENSGT00530000063723.a #28 ENSGT00900000141073 ENSGT00940000158044.a #31 ENSGT00940000153380.D ENSGT00940000160711 ENSGT00390000006265.b ENSGT00390000017663 ENSGT00940000159978 ENSGT00950000183203.d.h ENSGT00940000153654 ENSGT00390000002575 ENSGT00390000002259 Hystricomorpha_b ANCESTRAL SPECIES 1 ENSGT00390000009387 ENSGT00940000162536 ENSGT00550000074856 ENSGT00950000183166.a.b ENSGT00550000074919 #10 ENSGT00390000010239 #11 ENSGT00390000002511 #12 ENSGT00390000002408 #13 ENSGT00390000009662 #14 ENSGT00940000161769 #15 ENSGT00940000159913 ENSGT00530000064244.b #17 ENSGT00940000154816.a.b #18 ENSGT00390000018606 #19 ENSGT00940000158832 #20 ENSGT00940000155317.b #23 ENSGT00940000157027 #24 ENSGT00390000012733 #25 ENSGT00390000015977 #26 ENSGT00530000063723.a #28 ENSGT00900000141073 ENSGT00940000158044.a #31 ENSGT00940000153380.D ENSGT00940000160711 ENSGT00390000006265.b ENSGT00390000017663 ENSGT00940000159978 ENSGT00950000183203.d.h ENSGT00940000153654 ENSGT00390000002575 ENSGT00390000002259 Long-tailed chinchilla MODERN SPECIES 149 ESS2 (ENSCLAG00000015255) GSC2 (ENSCLAG00000016210) SLC25A1 (ENSCLAG00000016306) CLTCL1 (ENSCLAG00000016811) HIRA (ENSCLAG00000015724) #10 MRPL40 (ENSCLAG00000016629) #11 C22orf39 (ENSCLAG00000016842) #12 UFD1 (ENSCLAG00000015265) #13 CDC45 (ENSCLAG00000015752) #14 CLDN5 (ENSCLAG00000018017) #15 GP1BB (ENSCLAG00000016703) #17 SEPTIN5 (ENSCLAG00000015333) TBX1 (ENSCLAG00000014504) #18 ENSCLAG00000013592 TXNRD2 (ENSCLAG00000014718) #20 COMT (ENSCLAG00000013891) #23 ARVCF (ENSCLAG00000015864) #24 TANGO2 (ENSCLAG00000016523) #25 DGCR8 (ENSCLAG00000013910) #26 TRMT2A (ENSCLAG00000015094) #28 RANBP1 (ENSCLAG00000014666) ZDHHC8 (ENSCLAG00000014913) #31 ENSCLAG00000014259 RTN4R (ENSCLAG00000015372) ENSCLAG00000016071 ENSCLAG00000015292 MROH9 (ENSCLAG00000017068) HIC2 (ENSCLAG00000017018) ENSCLAG00000016421 ENSCLAG00000016677 YDJC (ENSCLAG00000015120) Degu MODERN SPECIES 62 ENSODEG00000020381 ENSODEG00000016401 SLC25A1 (ENSODEG00000016493) CLTCL1 (ENSODEG00000016517) HIRA (ENSODEG00000016444) #10 MRPL40 (ENSODEG00000017051) #11 C22orf39 (ENSODEG00000017124) #12 ENSODEG00000016396 #13 CDC45 (ENSODEG00000016658) #14 CLDN5 (ENSODEG00000020395) #15 SEPTIN5 (ENSODEG00000016498) GP1BB (ENSODEG00000016559) #17 TBX1 (ENSODEG00000016676) #18 GNB1L (ENSODEG00000016226) #19 TXNRD2 (ENSODEG00000016336) #20 COMT (ENSODEG00000016382) #23 ARVCF (ENSODEG00000016204) #24 TANGO2 (ENSODEG00000016106) #25 DGCR8 (ENSODEG00000016402) #26 TRMT2A (ENSODEG00000016053) #28 ENSODEG00000015935 ZDHHC8 (ENSODEG00000016037) #31 ENSODEG00000015917 RTN4R (ENSODEG00000015875) ENSODEG00000016154 ENSODEG00000015809 HIC2 (ENSODEG00000016054) ENSODEG00000015829 ENSODEG00000016216 YDJC (ENSODEG00000016038) ENSODEG00000015666 Guinea pig MODERN SPECIES 4 ESS2 (ENSCPOG00000004596) GSC2 (ENSCPOG00000015708) SLC25A1 (ENSCPOG00000001754) CLTCL1 (ENSCPOG00000002261) HIRA (ENSCPOG00000002264) #10 MRPL40 (ENSCPOG00000026802) #11 C22orf39 (ENSCPOG00000039279) #12 UFD1 (ENSCPOG00000002267) #13 CDC45 (ENSCPOG00000002270) #14 CLDN5 (ENSCPOG00000002274) #15 SEPTIN5 (ENSCPOG00000010483) GP1BB (ENSCPOG00000021659) #17 TBX1 (ENSCPOG00000012532) #18 GNB1L (ENSCPOG00000020237) #19 TXNRD2 (ENSCPOG00000011013) #20 COMT (ENSCPOG00000004445) #23 ARVCF (ENSCPOG00000014606) #24 TANGO2 (ENSCPOG00000002949) #25 DGCR8 (ENSCPOG00000002952) #26 ENSCPOG00000040089 TRMT2A (ENSCPOG00000002959) #28 RANBP1 (ENSCPOG00000030388) ZDHHC8 (ENSCPOG00000000580) #31 ENSCPOG00000033882 RTN4R (ENSCPOG00000020767) ENSCPOG00000021534 ENSCPOG00000001902 HIC2 (ENSCPOG00000001134) ENSCPOG00000013431 UBE2L3 (ENSCPOG00000006044) YDJC (ENSCPOG00000035514) Naked mole-rat female MODERN SPECIES 15 ENSHGLG00000047283 ENSHGLG00000009422 ENSHGLG00000013734 ENSHGLG00000010841 #10 MRPL40 (ENSHGLG00000039126) #11 C22orf39 (ENSHGLG00000035091) #12 ENSHGLG00000014850 #13 CDC45 (ENSHGLG00000015159) #14 CLDN5 (ENSHGLG00000046656) #15 ENSHGLG00000015729 SEPTIN5 (ENSHGLG00000013741) GP1BB (ENSHGLG00000016759) #17 TBX1 (ENSHGLG00000016334) #18 GNB1L (ENSHGLG00000016380) #19 TXNRD2 (ENSHGLG00000018271) #20 COMT (ENSHGLG00000008056) #23 ARVCF (ENSHGLG00000011341) #24 ENSHGLG00000017694 #25 DGCR8 (ENSHGLG00000016999) #26 ENSHGLG00000040825 RANBP1 (ENSHGLG00000006504) ENSHGLG00000038269 #31 ENSHGLG00000036999 #31 CCDC188 (ENSHGLG00000041985) ENSHGLG00000049857 ENSHGLG00000009015 ENSHGLG00000006917 ENSHGLG00000035576 ENSHGLG00000012022 ENSHGLG00000008541 ENSHGLG00000039103 Sciuridae ANCESTRAL SPECIES 42 ENSGT00940000162536 ENSGT00550000074856 ENSGT00950000183166.a.b ENSGT00550000074919 #10 ENSGT00390000010239 #11 ENSGT00390000002511 #12 ENSGT00390000002408 #13 ENSGT00390000009662 #14 ENSGT00940000161769 #15 ENSGT00940000159913 ENSGT00530000064244.b #17 ENSGT00940000154816.a.b #18 ENSGT00390000018606 #19 ENSGT00940000166811 ENSGT00940000158832 #20 ENSGT00940000155317.b #23 ENSGT00940000157027 #24 ENSGT00390000012733 #25 ENSGT00390000015977 #26 ENSGT00530000063723.a #28 ENSGT00940000154389.b #30 ENSGT00970000193655 ENSGT00900000141073 ENSGT00940000158044.a #31 ENSGT00940000153380.D ENSGT00940000160711 ENSGT00390000006265.b ENSGT00390000017663 Marmotini ANCESTRAL SPECIES 53 ENSGT00940000162536 ENSGT00550000074856 ENSGT00950000183166.a.b ENSGT00550000074919 #10 ENSGT00390000010239 #11 ENSGT00390000002511 #12 ENSGT00390000002408 #13 ENSGT00390000009662 #14 ENSGT00940000161769 #15 ENSGT00940000159913 ENSGT00530000064244.b #17 ENSGT00940000154816.a.b #18 ENSGT00940000166811 ENSGT00390000018606 #19 ENSGT00940000158832 #20 ENSGT00940000155317.b #23 ENSGT00940000157027 #24 ENSGT00390000012733 #25 ENSGT00390000015977 #26 ENSGT00530000063723.a #28 ENSGT00940000154389.b #30 ENSGT00970000193655 ENSGT00900000141073 ENSGT00940000158044.a #31 ENSGT00940000153380.D ENSGT00940000160711 ENSGT00390000006265.b ENSGT00390000017663 ENSGT01030000235464 Marmotini_b ANCESTRAL SPECIES 54 ENSGT00940000162536 ENSGT00550000074856 ENSGT00950000183166.a.b ENSGT00550000074919 #10 ENSGT00390000010239 #11 ENSGT00390000002511 #12 ENSGT00390000002408 #13 ENSGT00390000009662 #14 ENSGT00940000161769 #15 ENSGT00940000159913 ENSGT00530000064244.b #17 ENSGT00940000154816.a.b #18 ENSGT00940000166811 ENSGT00390000018606 #19 ENSGT00940000158832 #20 ENSGT00940000155317.b #23 ENSGT00940000157027 #24 ENSGT00390000012733 #25 ENSGT00390000015977 #26 ENSGT00530000063723.a #28 ENSGT00900000141073 ENSGT00940000158044.a #31 ENSGT00940000153380.D ENSGT00940000160711 ENSGT00390000006265.b ENSGT00390000017663 ENSGT01030000235464 Arctic ground squirrel MODERN SPECIES 252 GSC2 (ENSUPAG00010011849) SLC25A1 (ENSUPAG00010011833) CLTCL1 (ENSUPAG00010011775) HIRA (ENSUPAG00010011725) #10 MRPL40 (ENSUPAG00010011716) #11 C22orf39 (ENSUPAG00010011693) #12 UFD1 (ENSUPAG00010011672) #13 CDC45 (ENSUPAG00010011643) #14 CLDN5 (ENSUPAG00010011641) #15 GP1BB (ENSUPAG00010011635) #17 SEPTIN5 (ENSUPAG00010011595) TBX1 (ENSUPAG00010011554) #18 RTL10 (ENSUPAG00010011551) ENSUPAG00010011513 #19 TXNRD2 (ENSUPAG00010011325) #20 COMT (ENSUPAG00010011294) #23 ARVCF (ENSUPAG00010011258) #24 TANGO2 (ENSUPAG00010011235) #25 DGCR8 (ENSUPAG00010011207) #26 TRMT2A (ENSUPAG00010011153) #28 ENSUPAG00010011129 #30 ZDHHC8 (ENSUPAG00010011116) #31 ENSUPAG00010011111 RTN4R (ENSUPAG00010011108) ENSUPAG00010011098 ENSUPAG00010011090 ENSUPAG00010011089 Squirrel MODERN SPECIES 219 CLTCL1 (ENSSTOG00000002838) HIRA (ENSSTOG00000002864) #10 MRPL40 (ENSSTOG00000002887) #11 C22orf39 (ENSSTOG00000023959) #12 UFD1 (ENSSTOG00000002896) #13 CDC45 (ENSSTOG00000002917) #14 CLDN5 (ENSSTOG00000023943) #15 ENSSTOG00000019936 SEPTIN5 (ENSSTOG00000010725) GP1BB (ENSSTOG00000028299) #17 TBX1 (ENSSTOG00000004505) #18 GNB1L (ENSSTOG00000022761) #19 ENSSTOG00000022331 TXNRD2 (ENSSTOG00000011425) #20 ENSSTOG00000019977 COMT (ENSSTOG00000027573) #23 ARVCF (ENSSTOG00000014869) #24 TANGO2 (ENSSTOG00000014461) #25 DGCR8 (ENSSTOG00000023936) #26 TRMT2A (ENSSTOG00000014487) #28 ENSSTOG00000026840 ZDHHC8 (ENSSTOG00000021349) #31 ENSSTOG00000023515 RTN4R (ENSSTOG00000021308) ENSSTOG00000006384 ENSSTOG00000006363 Alpin marmot MODERN SPECIES 67 SLC25A1 (ENSMMMG00000002744) CLTCL1 (ENSMMMG00000002805) HIRA (ENSMMMG00000003121) #10 MRPL40 (ENSMMMG00000003198) #11 C22orf39 (ENSMMMG00000003206) #12 UFD1 (ENSMMMG00000003233) #13 CDC45 (ENSMMMG00000003340) #14 CLDN5 (ENSMMMG00000003401) #15 SEPTIN5 (ENSMMMG00000003410) GP1BB (ENSMMMG00000003456) #17 TBX1 (ENSMMMG00000003469) #18 GNB1L (ENSMMMG00000003491) #19 RTL10 (ENSMMMG00000003536) ENSMMMG00000003551 TXNRD2 (ENSMMMG00000003687) #20 COMT (ENSMMMG00000004274) #23 ENSMMMG00000004301 ARVCF (ENSMMMG00000004311) #24 ENSMMMG00000004324 #24 TANGO2 (ENSMMMG00000004334) #25 DGCR8 (ENSMMMG00000004386) #26 TRMT2A (ENSMMMG00000004427) #28 ENSMMMG00000004537 RANBP1 (ENSMMMG00000004542) ZDHHC8 (ENSMMMG00000004564) #31 CCDC188 (ENSMMMG00000004585) RTN4R (ENSMMMG00000004602) ENSMMMG00000004607 ENSMMMG00000004616 ENSMMMG00000004638 ENSMMMG00000004669 Eurasian red squirrel MODERN SPECIES 17 CLTCL1 (ENSSVLG00005009761) ENSSVLG00005009831 HIRA (ENSSVLG00005009905) #10 MRPL40 (ENSSVLG00005010046) #11 C22orf39 (ENSSVLG00005010097) #12 ENSSVLG00005010133 #13 CDC45 (ENSSVLG00005010179) #14 CLDN5 (ENSSVLG00005007073) #15 ENSSVLG00005007086 SEPTIN5 (ENSSVLG00005007153) GP1BB (ENSSVLG00005007231) #17 TBX1 (ENSSVLG00005007283) #18 GNB1L (ENSSVLG00005007359) #19 RTL10 (ENSSVLG00005007389) TXNRD2 (ENSSVLG00005007580) #20 COMT (ENSSVLG00005008169) #23 ARVCF (ENSSVLG00005008262) #24 TANGO2 (ENSSVLG00005008385) #25 DGCR8 (ENSSVLG00005008519) #26 TRMT2A (ENSSVLG00005008593) #28 RANBP1 (ENSSVLG00005008780) ZDHHC8 (ENSSVLG00005008895) #31 CCDC188 (ENSSVLG00005008983) RTN4R (ENSSVLG00005009047) ENSSVLG00005009088 ENSSVLG00005009216 ENSSVLG00005009313 ENSSVLG00005009353 ENSSVLG00005009376 ENSSVLG00005009387 ENSSVLG00005009452 Laurasiatheria ANCESTRAL SPECIES 19 ENSGT00940000162536 ENSGT00550000074856 ENSGT00950000183166.a.b ENSGT00550000074919 #10 ENSGT00390000010239 #11 ENSGT00390000002511 #12 ENSGT00390000002408 #13 ENSGT00390000009662 #14 ENSGT00940000161769 #15 ENSGT00940000159913 ENSGT00530000064244.b #17 ENSGT00940000154816.a.b #18 ENSGT00390000018606 #19 ENSGT00940000166811 ENSGT00940000158832 #20 ENSGT00940000155317.b #23 ENSGT00940000157027 #24 ENSGT00390000012733 #25 ENSGT00390000015977 #26 ENSGT00970000193655 ENSGT00530000063723.a #28 ENSGT00900000141073 ENSGT00940000158044.a #31 ENSGT00940000153380.D ENSGT00940000160711 ENSGT00390000006265.b ENSGT00390000017663 Laurasiatheria_a ANCESTRAL SPECIES 13 ENSGT00940000162536 ENSGT00550000074856 ENSGT00950000183166.a.b ENSGT00550000074919 #10 ENSGT00390000010239 #11 ENSGT00390000002511 #12 ENSGT00390000002408 #13 ENSGT00390000009662 #14 ENSGT00940000161769 #15 ENSGT00940000159913 ENSGT00530000064244.b #17 ENSGT00940000154816.a.b #18 ENSGT00390000018606 #19 ENSGT00940000166811 ENSGT00940000158832 #20 ENSGT00940000155317.b #23 ENSGT00940000157027 #24 ENSGT00390000012733 #25 ENSGT00390000015977 #26 ENSGT00970000193655 ENSGT00530000063723.a #28 ENSGT00900000141073 ENSGT00940000158044.a #31 ENSGT00940000153380.D ENSGT00940000160711 ENSGT00390000006265.b ENSGT00390000017663 ENSGT01030000234510.a.a.b ENSGT01030000234510.a.a.a.a.a.a ENSGT00390000002368 ENSGT00940000156554 Artiodactyla ANCESTRAL SPECIES 17 ENSGT00390000009387 ENSGT00940000162536 ENSGT00550000074856 ENSGT00550000074919 #10 ENSGT00390000010239 #11 ENSGT00390000002511 #12 ENSGT00390000002408 #13 ENSGT00390000009662 #14 ENSGT00940000161769 #15 ENSGT00940000159913 ENSGT00530000064244.b #17 ENSGT00940000154816.a.b #18 ENSGT00390000018606 #19 ENSGT00940000166811 ENSGT00940000158832 #20 ENSGT00940000155317.b #23 ENSGT00940000157027 #24 ENSGT00390000012733 #25 ENSGT00390000015977 #26 ENSGT00970000193655 ENSGT00530000063723.a #28 ENSGT00900000141073 ENSGT00940000158044.a #31 ENSGT00940000153380.D ENSGT00940000160711 ENSGT00390000006265.b ENSGT00390000017663 ENSGT01030000234510.a.a.b ENSGT01030000234510.a.a.a.a.a.a ENSGT00390000002368 ENSGT00940000156554 Suina ANCESTRAL SPECIES 20 ENSGT00940000162226 ENSGT00390000009387 ENSGT00940000162536 ENSGT00550000074856 ENSGT00550000074919 #10 ENSGT00390000010239 #11 ENSGT00390000002511 #12 ENSGT00390000002408 #13 ENSGT00390000009662 #14 ENSGT00940000161769 #15 ENSGT00940000159913 ENSGT00530000064244.b #17 ENSGT00940000154816.a.b #18 ENSGT00390000018606 #19 ENSGT00940000158832 #20 ENSGT00940000155317.b #23 ENSGT00940000157027 #24 ENSGT00390000012733 #25 ENSGT00390000015977 #26 ENSGT00970000193655 ENSGT00530000063723.a #28 ENSGT00900000141073 ENSGT00940000158044.a #31 ENSGT00940000153380.D ENSGT00940000160711 ENSGT00390000006265.b ENSGT00390000017663 Pig MODERN SPECIES 5 ESS2 (ENSSSCG00000010114) GSC2 (ENSSSCG00000062065) SLC25A1 (ENSSSCG00000010116) ENSSSCG00000010117 HIRA (ENSSSCG00000010118) #10 MRPL40 (ENSSSCG00000034014) #11 C22orf39 (ENSSSCG00000040740) #12 UFD1 (ENSSSCG00000010121) #13 CDC45 (ENSSSCG00000010122) #14 CLDN5 (ENSSSCG00000041667) #15 SEPTIN5 (ENSSSCG00000010128) GP1BB (ENSSSCG00000030732) #17 TBX1 (ENSSSCG00000037762) #18 GNB1L (ENSSSCG00000010130) #19 TXNRD2 (ENSSSCG00000010131) #20 COMT (ENSSSCG00000010132) #23 ARVCF (ENSSSCG00000010133) #24 TANGO2 (ENSSSCG00000010134) #25 DGCR8 (ENSSSCG00000010135) #26 TRMT2A (ENSSSCG00000010136) #28 ENSSSCG00000059366 RANBP1 (ENSSSCG00000038308) ZDHHC8 (ENSSSCG00000010138) #31 CCDC188 (ENSSSCG00000010139) RTN4R (ENSSSCG00000034656) ENSSSCG00000033787 ENSSSCG00000032073 CHRM3 (ENSSSCG00000026176) ENSSSCG00000041446 ZP4 (ENSSSCG00000010141) RYR2 (ENSSSCG00000010142) Chacoan peccary MODERN SPECIES 812 TSSK2 (ENSCWAG00000004822) ESS2 (ENSCWAG00000004769) GSC2 (ENSCWAG00000004751) SLC25A1 (ENSCWAG00000004726) HIRA (ENSCWAG00000004646) #10 MRPL40 (ENSCWAG00000004614) #11 C22orf39 (ENSCWAG00000004586) #12 UFD1 (ENSCWAG00000004536) #13 CDC45 (ENSCWAG00000004361) #14 CLDN5 (ENSCWAG00000004333) #15 SEPTIN5 (ENSCWAG00000004243) GP1BB (ENSCWAG00000004211) #17 TBX1 (ENSCWAG00000004121) #18 GNB1L (ENSCWAG00000004091) #19 TXNRD2 (ENSCWAG00000003913) #20 COMT (ENSCWAG00000011158) #23 ARVCF (ENSCWAG00000010468) #24 TANGO2 (ENSCWAG00000010139) #25 DGCR8 (ENSCWAG00000010025) #26 ENSCWAG00000010009 TRMT2A (ENSCWAG00000009922) #28 RANBP1 (ENSCWAG00000009835) ZDHHC8 (ENSCWAG00000009756) #31 CCDC188 (ENSCWAG00000009656) RTN4R (ENSCWAG00000009631) Artiodactyla_a ANCESTRAL SPECIES 17 ENSGT00390000009387 ENSGT00940000162536 ENSGT00550000074856 ENSGT00550000074919 #10 ENSGT00390000010239 #11 ENSGT00390000002511 #12 ENSGT00390000002408 #13 ENSGT00390000009662 #14 ENSGT00940000161769 #15 ENSGT00940000159913 ENSGT00530000064244.b #17 ENSGT00940000154816.a.b #18 ENSGT00390000018606 #19 ENSGT00940000166811 ENSGT00940000158832 #20 ENSGT00940000155317.b #23 ENSGT00940000157027 #24 ENSGT00390000012733 #25 ENSGT00390000015977 #26 ENSGT00970000193655 ENSGT00530000063723.a #28 ENSGT00900000141073 ENSGT00940000158044.a #31 ENSGT00940000153380.D ENSGT00940000160711 ENSGT00390000006265.b ENSGT00390000017663 ENSGT01030000234510.a.a.b ENSGT01030000234510.a.a.a.a.a.a ENSGT00390000002368 ENSGT00940000156554 Camelidae ANCESTRAL SPECIES 72 ENSGT00940000163130 ENSGT00940000162226 ENSGT00390000009387 ENSGT00550000074856 ENSGT00550000074919 #10 ENSGT00390000010239 #11 ENSGT00390000002511 #12 ENSGT00390000002408 #13 ENSGT00390000009662 #14 ENSGT00940000161769 #15 ENSGT00940000159913 ENSGT00530000064244.b #17 ENSGT00940000154816.a.b #18 ENSGT00390000018606 #19 ENSGT00940000158832 #20 ENSGT00940000155317.b #23 ENSGT00940000157027 #24 ENSGT00390000012733 #25 ENSGT00390000015977 #26 ENSGT00970000193655 ENSGT00530000063723.a #28 ENSGT00900000141073 ENSGT00940000158044.a #31 ENSGT00940000153380.D ENSGT00940000160711 ENSGT00390000006265.b ENSGT00390000017663 Arabian camel MODERN SPECIES 25 TSSK1B (ENSCDRG00005019438) TSSK2 (ENSCDRG00005019423) ESS2 (ENSCDRG00005019401) SLC25A1 (ENSCDRG00005019345) HIRA (ENSCDRG00005019217) #10 MRPL40 (ENSCDRG00005019190) #11 C22orf39 (ENSCDRG00005019176) #12 UFD1 (ENSCDRG00005019126) #13 CDC45 (ENSCDRG00005019061) #14 CLDN5 (ENSCDRG00005019043) #15 SEPTIN5 (ENSCDRG00005018840) GP1BB (ENSCDRG00005018787) #17 TBX1 (ENSCDRG00005018736) #18 GNB1L (ENSCDRG00005018677) #19 TXNRD2 (ENSCDRG00005018620) #20 COMT (ENSCDRG00005018572) #23 ARVCF (ENSCDRG00005018376) #24 TANGO2 (ENSCDRG00005018134) #25 DGCR8 (ENSCDRG00005017952) #26 ENSCDRG00005017923 TRMT2A (ENSCDRG00005017855) #28 RANBP1 (ENSCDRG00005017795) ENSCDRG00005017778 #31 CCDC188 (ENSCDRG00005017731) RTN4R (ENSCDRG00005017692) ENSCDRG00005017649 ENSCDRG00005017582 Artiodactyla_b ANCESTRAL SPECIES 10 ENSGT00390000009387 ENSGT00940000162536 ENSGT00550000074856 ENSGT00550000074919 #10 ENSGT00390000010239 #11 ENSGT00390000002511 #12 ENSGT00390000002408 #13 ENSGT00390000009662 #14 ENSGT00940000161769 #15 ENSGT00940000159913 ENSGT00530000064244.b #17 ENSGT00940000154816.a.b #18 ENSGT00390000018606 #19 ENSGT00940000166811 ENSGT00940000158832 #20 ENSGT00940000155317.b #23 ENSGT00940000157027 #24 ENSGT00390000012733 #25 ENSGT00390000015977 #26 ENSGT00970000193655 ENSGT00530000063723.a #28 ENSGT00900000141073 ENSGT00940000158044.a #31 ENSGT00940000153380.D ENSGT00940000160711 ENSGT00390000006265.b ENSGT00390000017663 ENSGT01030000234510.a.a.b ENSGT01030000234510.a.a.a.a.a.a ENSGT00390000002368 ENSGT00940000156554 Cetacea ANCESTRAL SPECIES 11 ENSGT00390000009387 ENSGT00940000162536 ENSGT00550000074856 ENSGT00550000074919 #10 ENSGT00390000010239 #11 ENSGT00390000002511 #12 ENSGT00390000002408 #13 ENSGT00390000009662 #14 ENSGT00940000161769 #15 ENSGT00940000159913 ENSGT00530000064244.b #17 ENSGT00940000154816.a.b #18 ENSGT00390000018606 #19 ENSGT00940000166811 ENSGT00940000158832 #20 ENSGT00940000155317.b #23 ENSGT00940000157027 #24 ENSGT00390000012733 #25 ENSGT00390000015977 #26 ENSGT00970000193655 ENSGT00530000063723.a #28 ENSGT00900000141073 ENSGT00940000158044.a #31 ENSGT00940000153380.D ENSGT00940000160711 ENSGT00390000006265.b ENSGT00390000017663 ENSGT01030000234510.a.a.b ENSGT00390000002368 ENSGT00940000156554 ENSGT00390000000724.c.b Odontoceti ANCESTRAL SPECIES 10 ENSGT00390000009387 ENSGT00940000162536 ENSGT00550000074856 ENSGT00550000074919 #10 ENSGT00390000010239 #11 ENSGT00390000002511 #12 ENSGT00390000002408 #13 ENSGT00390000009662 #14 ENSGT00940000161769 #15 ENSGT00940000159913 ENSGT00530000064244.b #17 ENSGT00940000154816.a.b #18 ENSGT00390000018606 #19 ENSGT00940000166811 ENSGT00940000158832 #20 ENSGT00940000155317.b #23 ENSGT00940000157027 #24 ENSGT00390000012733 #25 ENSGT00390000015977 #26 ENSGT00970000193655 ENSGT00530000063723.a #28 ENSGT00900000141073 ENSGT00940000158044.a #31 ENSGT00940000153380.D ENSGT00940000160711 ENSGT00390000006265.b.f.a ENSGT00390000017663 ENSGT01030000234510.a.a.b ENSGT00390000002368 ENSGT00940000156554 ENSGT00390000000724.c.b Odontoceti_a ANCESTRAL SPECIES 9 ENSGT00390000009387 ENSGT00940000162536 ENSGT00550000074856.g ENSGT00550000074919 #10 ENSGT00390000010239 #11 ENSGT00390000002511 #12 ENSGT00390000002408 #13 ENSGT00390000009662 #14 ENSGT00940000161769 #15 ENSGT00940000159913 ENSGT00530000064244.b #17 ENSGT00940000154816.a.b #18 ENSGT00390000018606 #19 ENSGT00940000166811 ENSGT00940000158832 #20 ENSGT00940000155317.b #23 ENSGT00940000157027 #24 ENSGT00390000012733 #25 ENSGT00390000015977 #26 ENSGT00970000193655 ENSGT00530000063723.a #28 ENSGT00900000141073 ENSGT00940000158044.a #31 ENSGT00940000153380.D ENSGT00940000160711 ENSGT00390000006265.b.f.a ENSGT00390000017663 ENSGT01030000234510.a.a.b ENSGT00390000002368 ENSGT00940000156554 ENSGT00390000000724.c.b Odontoceti_b ANCESTRAL SPECIES 10 ENSGT00390000009387 ENSGT00940000162536 ENSGT00550000074856.g ENSGT00550000074919 #10 ENSGT00390000010239 #11 ENSGT00390000002511 #12 ENSGT00390000002408 #13 ENSGT00390000009662 #14 ENSGT00940000161769 #15 ENSGT00940000159913 ENSGT00530000064244.b #17 ENSGT00940000154816.a.b #18 ENSGT00940000166811 ENSGT00390000018606 #19 ENSGT00940000158832 #20 ENSGT00940000155317.b #23 ENSGT00940000157027 #24 ENSGT00390000012733 #25 ENSGT00390000015977 #26 ENSGT00970000193655 ENSGT00530000063723.a #28 ENSGT00900000141073 ENSGT00940000158044.a #31 ENSGT00940000153380.D ENSGT00940000160711 ENSGT00390000006265.b.f.a ENSGT00390000017663 ENSGT01030000234510.a.a.b ENSGT00390000002368 ENSGT00940000156554 ENSGT00390000000724.c.b Monodontidae ANCESTRAL SPECIES 8 ENSGT00940000162226 ENSGT00390000009387 ENSGT00940000162536 ENSGT00550000074856.g ENSGT00550000074919 #10 ENSGT00390000010239 #11 ENSGT00390000002511 #12 ENSGT00390000002408 #13 ENSGT00390000009662 #14 ENSGT00940000161769 #15 ENSGT00940000159913 ENSGT00530000064244.b #17 ENSGT00940000154816.a.b #18 ENSGT00390000018606 #19 ENSGT00940000158832 #20 ENSGT00940000155317.b #23 ENSGT00940000157027 #24 ENSGT00390000012733 #25 ENSGT00390000015977 #26 ENSGT00970000193655 ENSGT00530000063723.a #28 ENSGT00900000141073 ENSGT00940000158044.a #31 ENSGT00940000153380.D ENSGT00940000160711 ENSGT00390000006265.b.f.a ENSGT00390000017663 ENSGT01030000234510.a.a.b ENSGT00390000002368 ENSGT00940000156554 ENSGT00390000000724.c.b Narwhal MODERN SPECIES 295 TSSK1B (ENSMMNG00015003130) TSSK2 (ENSMMNG00015003121) ESS2 (ENSMMNG00015003094) GSC2 (ENSMMNG00015003081) ENSMMNG00015003057 HIRA (ENSMMNG00015003001) #10 MRPL40 (ENSMMNG00015002968) #11 C22orf39 (ENSMMNG00015002959) #12 UFD1 (ENSMMNG00015002931) #13 CDC45 (ENSMMNG00015002864) #14 SEPTIN5 (ENSMMNG00015002817) GP1BB (ENSMMNG00015002796) #17 TBX1 (ENSMMNG00015002777) #18 GNB1L (ENSMMNG00015002745) #19 TXNRD2 (ENSMMNG00015002636) #20 COMT (ENSMMNG00015002538) #23 ARVCF (ENSMMNG00015002461) #24 TANGO2 (ENSMMNG00015002360) #25 DGCR8 (ENSMMNG00015002248) #26 ENSMMNG00015002215 TRMT2A (ENSMMNG00015002180) #28 RANBP1 (ENSMMNG00015002143) ZDHHC8 (ENSMMNG00015002094) #31 CCDC188 (ENSMMNG00015002045) RTN4R (ENSMMNG00015002020) ENSMMNG00015001992 ENSMMNG00015001943 MC2R (ENSMMNG00015001914) RNMT (ENSMMNG00015001893) FAM210A (ENSMMNG00015001875) LDLRAD4 (ENSMMNG00015001832) Beluga whale MODERN SPECIES 60 TSSK2 (ENSDLEG00000012209) ESS2 (ENSDLEG00000012187) GSC2 (ENSDLEG00000012166) ENSDLEG00000012143 HIRA (ENSDLEG00000011918) #10 MRPL40 (ENSDLEG00000011862) #11 C22orf39 (ENSDLEG00000020170) #12 UFD1 (ENSDLEG00000020167) #13 CDC45 (ENSDLEG00000020154) #14 CLDN5 (ENSDLEG00000020150) #15 GP1BB (ENSDLEG00000020147) #17 SEPT5 (ENSDLEG00000020145) TBX1 (ENSDLEG00000020144) #18 GNB1L (ENSDLEG00000020142) #19 TXNRD2 (ENSDLEG00000020139) #20 COMT (ENSDLEG00000020135) #23 ARVCF (ENSDLEG00000020102) #24 TANGO2 (ENSDLEG00000020094) #25 DGCR8 (ENSDLEG00000020080) #26 TRMT2A (ENSDLEG00000020075) #28 RANBP1 (ENSDLEG00000020049) ZDHHC8 (ENSDLEG00000020024) #31 RTN4R (ENSDLEG00000020018) ENSDLEG00000020007 DGCR6L (ENSDLEG00000020002) MC2R (ENSDLEG00000020000) RNMT (ENSDLEG00000019988) FAM210A (ENSDLEG00000019983) LDLRAD4 (ENSDLEG00000019979) CEP192 (ENSDLEG00000019558) SEH1L (ENSDLEG00000019486) Vaquita MODERN SPECIES 5 ESS2 (ENSPSNG00000009812) GSC2 (ENSPSNG00000009743) SLC25A1 (ENSPSNG00000009671) HIRA (ENSPSNG00000022312) #10 MRPL40 (ENSPSNG00000022307) #11 C22orf39 (ENSPSNG00000022302) #12 UFD1 (ENSPSNG00000022294) #13 CDC45 (ENSPSNG00000022278) #14 CLDN5 (ENSPSNG00000022262) #15 SEPTIN5 (ENSPSNG00000022251) GP1BB (ENSPSNG00000022243) #17 TBX1 (ENSPSNG00000022232) #18 RTL10 (ENSPSNG00000022217) GNB1L (ENSPSNG00000022213) #19 TXNRD2 (ENSPSNG00000022136) #20 COMT (ENSPSNG00000022080) #23 ARVCF (ENSPSNG00000022048) #24 TANGO2 (ENSPSNG00000021992) #25 DGCR8 (ENSPSNG00000021917) #26 TRMT2A (ENSPSNG00000021867) #28 RANBP1 (ENSPSNG00000021841) ZDHHC8 (ENSPSNG00000021796) #31 RTN4R (ENSPSNG00000021732) ENSPSNG00000021724 ENSPSNG00000021716 MC2R (ENSPSNG00000021708) RNMT (ENSPSNG00000021693) FAM210A (ENSPSNG00000021679) LDLRAD4 (ENSPSNG00000021632) CEP192 (ENSPSNG00000021572) SEH1L (ENSPSNG00000021525) Dolphin MODERN SPECIES 3040 COMT (ENSTTRG00000008069) #23 ARVCF (ENSTTRG00000008075) #24 TANGO2 (ENSTTRG00000008107) #25 DGCR8 (ENSTTRG00000008121) #26 TRMT2A (ENSTTRG00000008135) #28 ENSTTRG00000008142 #30 ZDHHC8 (ENSTTRG00000008146) #31 RTN4R (ENSTTRG00000008148) ENSTTRG00000008149 ENSTTRG00000008151 Sperm whale MODERN SPECIES 182 COMT (ENSPCTG00005013495) #23 ARVCF (ENSPCTG00005012623) #24 TANGO2 (ENSPCTG00005015763) #25 Blue whale MODERN SPECIES 5 TSSK2 (ENSBMSG00010016818) ESS2 (ENSBMSG00010016855) GSC2 (ENSBMSG00010016908) SLC25A1 (ENSBMSG00010016932) ENSBMSG00010017015 #10 MRPL40 (ENSBMSG00010017278) #11 ENSBMSG00010017317 #12 UFD1 (ENSBMSG00010017349) #13 CDC45 (ENSBMSG00010017411) #14 CLDN5 (ENSBMSG00010017459) #15 SEPTIN5 (ENSBMSG00010017511) GP1BB (ENSBMSG00010017581) #17 TBX1 (ENSBMSG00010017617) #18 GNB1L (ENSBMSG00010017693) #19 TXNRD2 (ENSBMSG00010017798) #20 COMT (ENSBMSG00010018058) #23 ARVCF (ENSBMSG00010018117) #24 TANGO2 (ENSBMSG00010018220) #25 DGCR8 (ENSBMSG00010018356) #26 TRMT2A (ENSBMSG00010018395) #28 RANBP1 (ENSBMSG00010018448) ZDHHC8 (ENSBMSG00010018514) #31 CCDC188 (ENSBMSG00010018579) ENSBMSG00010018682 RTN4R (ENSBMSG00010018698) ENSBMSG00010018745 ENSBMSG00010018836 MC2R (ENSBMSG00010018850) RNMT (ENSBMSG00010018871) FAM210A (ENSBMSG00010018900) LDLRAD4 (ENSBMSG00010018971) Pecora ANCESTRAL SPECIES 14 ENSGT00940000162226 ENSGT00390000009387 ENSGT00940000162536 ENSGT00550000074856 ENSGT00550000074919 #10 ENSGT00390000010239 #11 ENSGT00390000002511 #12 ENSGT00390000002408 #13 ENSGT00390000009662 #14 ENSGT00940000161769 #15 ENSGT00940000159913 ENSGT00530000064244.b #17 ENSGT00940000154816.a.b #18 ENSGT00390000018606 #19 ENSGT00940000158832 #20 ENSGT00940000155317.b #23 ENSGT00940000157027 #24 ENSGT00390000012733 #25 ENSGT00390000015977 #26 ENSGT00970000193655 ENSGT00530000063723.a #28 ENSGT00900000141073 ENSGT00940000158044.a #31 ENSGT00940000153380.D ENSGT00940000160711 ENSGT00390000006265.b ENSGT00390000017663 Yarkand deer MODERN SPECIES 28 THAP7 (ENSCHYG00000007567) LRRC74B (ENSCHYG00000007592) P2RX6 (ENSCHYG00000007635) SLC7A4 (ENSCHYG00000007676) SMPD4 (ENSCHYG00000007732) ENSCHYG00000008168 ENSCHYG00000008216 HIRA (ENSCHYG00000008260) #10 MRPL40 (ENSCHYG00000008542) #11 C22orf39 (ENSCHYG00000008556) #12 UFD1 (ENSCHYG00000008589) #13 CDC45 (ENSCHYG00000008802) #14 CLDN5 (ENSCHYG00000009320) #15 GNB1L (ENSCHYG00000009346) #19 TXNRD2 (ENSCHYG00000009421) #20 COMT (ENSCHYG00000009819) #23 ARVCF (ENSCHYG00000009978) #24 TANGO2 (ENSCHYG00000010509) #25 DGCR8 (ENSCHYG00000010923) #26 TRMT2A (ENSCHYG00000011039) #28 RANBP1 (ENSCHYG00000011119) ZDHHC8 (ENSCHYG00000011204) #31 CCDC188 (ENSCHYG00000011357) RTN4R (ENSCHYG00000011465) ENSCHYG00000011500 ENSCHYG00000011692 PPM1F (ENSCHYG00000011899) TOP3B (ENSCHYG00000012009) ENSCHYG00000012231 ENSCHYG00000012249 ENSCHYG00000012294 Percora_a ANCESTRAL SPECIES 17 ENSGT00940000162226 ENSGT00390000009387 ENSGT00940000162536 ENSGT00550000074856 ENSGT00550000074919 #10 ENSGT00390000010239 #11 ENSGT00390000002511 #12 ENSGT00390000002408 #13 ENSGT00390000009662 #14 ENSGT00940000161769 #15 ENSGT00940000159913 ENSGT00530000064244.b #17 ENSGT00940000154816.a.b #18 ENSGT00390000018606 #19 ENSGT00940000158832 #20 ENSGT00940000155317.b #23 ENSGT00940000157027 #24 ENSGT00390000012733 #25 ENSGT00390000015977 #26 ENSGT00970000193655 ENSGT00530000063723.a #28 ENSGT00900000141073 ENSGT00940000158044.a #31 ENSGT00940000153380.D ENSGT00940000160711 ENSGT00390000006265.b ENSGT00390000017663 Siberian musk deer MODERN SPECIES 1175 TSSK2 (ENSMMSG00000008823) ESS2 (ENSMMSG00000008789) GSC2 (ENSMMSG00000008763) SLC25A1 (ENSMMSG00000008735) HIRA (ENSMMSG00000008682) #10 MRPL40 (ENSMMSG00000008630) #11 C22orf39 (ENSMMSG00000008603) #12 UFD1 (ENSMMSG00000008492) #13 CDC45 (ENSMMSG00000008266) #14 CLDN5 (ENSMMSG00000008238) #15 GP1BB (ENSMMSG00000008211) #17 SEPTIN5 (ENSMMSG00000008112) TBX1 (ENSMMSG00000008043) #18 GNB1L (ENSMMSG00000007985) #19 TXNRD2 (ENSMMSG00000007930) #20 COMT (ENSMMSG00000007908) #23 ARVCF (ENSMMSG00000007015) #24 TANGO2 (ENSMMSG00000006788) #25 DGCR8 (ENSMMSG00000006700) #26 ENSMMSG00000006680 TRMT2A (ENSMMSG00000006612) #28 RANBP1 (ENSMMSG00000006559) ZDHHC8 (ENSMMSG00000006430) #31 CCDC188 (ENSMMSG00000006374) RTN4R (ENSMMSG00000006355) ENSMMSG00000006242 ENSMMSG00000006229 ENSMMSG00000006217 Bovidae ANCESTRAL SPECIES 17 ENSGT00940000162226 ENSGT00390000009387 ENSGT00940000162536 ENSGT00550000074856 ENSGT00550000074919 #10 ENSGT00390000010239 #11 ENSGT00390000002511 #12 ENSGT00390000002408 #13 ENSGT00390000009662 #14 ENSGT00940000161769 #15 ENSGT00940000159913 ENSGT00530000064244.b #17 ENSGT00940000154816.a.b #18 ENSGT00390000018606 #19 ENSGT00940000158832 #20 ENSGT00940000155317.b #23 ENSGT00940000157027 #24 ENSGT00390000012733 #25 ENSGT00390000015977 #26 ENSGT00530000063723.a #28 ENSGT00970000193655 ENSGT00900000141073 ENSGT00940000158044.a #31 ENSGT00940000153380.D ENSGT00940000160711 ENSGT00390000006265.b ENSGT00390000017663 Caprinae ANCESTRAL SPECIES 39 ENSGT00940000163130 ENSGT00940000162226 ENSGT00390000009387 ENSGT00940000162536 ENSGT00550000074856 ENSGT00550000074919 #10 ENSGT00390000010239.f #11 ENSGT00390000002511 #12 ENSGT00390000002408 #13 ENSGT00390000009662 #14 ENSGT00940000161769 #15 ENSGT00940000159913 ENSGT00530000064244.b #17 ENSGT00390000018606 #19 ENSGT00940000158832 #20 ENSGT00940000155317.b #23 ENSGT00940000157027 #24 ENSGT00390000012733 #25 ENSGT00390000015977 #26 ENSGT00530000063723.a #28 ENSGT00970000193655 ENSGT00900000141073 ENSGT00940000158044.a #31 ENSGT00940000153380.D ENSGT00940000160711 ENSGT00390000006265.b ENSGT00390000017663 Rambouillet Sheep MODERN SPECIES 8 TSSK1B (ENSOARG00020005555) TSSK2 (ENSOARG00020005563) ESS2 (ENSOARG00020005571) GSC2 (ENSOARG00020005609) SLC25A1 (ENSOARG00020005633) HIRA (ENSOARG00020005695) #10 MRPL40 (ENSOARG00020005950) #11 C22orf39 (ENSOARG00020005967) #12 UFD1 (ENSOARG00020005997) #13 CDC45 (ENSOARG00020006078) #14 CLDN5 (ENSOARG00020006137) #15 SEPTIN5 (ENSOARG00020006157) GP1BB (ENSOARG00020006258) #17 GNB1L (ENSOARG00020006349) #19 TXNRD2 (ENSOARG00020006402) #20 COMT (ENSOARG00020006627) #23 TANGO2 (ENSOARG00020006700) #25 DGCR8 (ENSOARG00020006976) #26 TRMT2A (ENSOARG00020007052) #28 RANBP1 (ENSOARG00020007586) ZDHHC8 (ENSOARG00020007625) #31 CCDC188 (ENSOARG00020007702) RTN4R (ENSOARG00020007768) ENSOARG00020007793 ENSOARG00020007882 Goat MODERN SPECIES 34 TSSK2 (ENSCHIG00000000447) ESS2 (ENSCHIG00000008099) GSC2 (ENSCHIG00000012877) SLC25A1 (ENSCHIG00000015498) HIRA (ENSCHIG00000023761) #10 ENSCHIG00000000131 #11 C22orf39 (ENSCHIG00000000235) #12 UFD1 (ENSCHIG00000000340) #13 CDC45 (ENSCHIG00000015066) #14 CLDN5 (ENSCHIG00000020205) #15 SEPTIN5 (ENSCHIG00000000129) GP1BB (ENSCHIG00000000234) #17 ENSCHIG00000000274 GNB1L (ENSCHIG00000000307) #19 TXNRD2 (ENSCHIG00000000374) #20 COMT (ENSCHIG00000006984) #23 ARVCF (ENSCHIG00000015252) #24 TANGO2 (ENSCHIG00000019941) #25 DGCR8 (ENSCHIG00000019845) #26 TRMT2A (ENSCHIG00000009771) #28 ENSCHIG00000017938 RANBP1 (ENSCHIG00000022923) ZDHHC8 (ENSCHIG00000019973) #31 ENSCHIG00000013905 RTN4R (ENSCHIG00000025804) ENSCHIG00000021938 ENSCHIG00000000160 Bovinae ANCESTRAL SPECIES 13 ENSGT00940000162226 ENSGT00390000009387 ENSGT00940000162536 ENSGT00550000074856 ENSGT00550000074919 #10 ENSGT00390000010239 #11 ENSGT00390000002511 #12 ENSGT00390000002408 #13 ENSGT00390000009662 #14 ENSGT00940000161769 #15 ENSGT00940000159913 ENSGT00530000064244.b #17 ENSGT00940000154816.a.b #18 ENSGT00390000018606 #19 ENSGT00940000158832 #20 ENSGT00940000155317.b #23 ENSGT00940000157027 #24 ENSGT00390000012733 #25 ENSGT00390000015977 #26 ENSGT00530000063723.a #28 ENSGT00970000193655 ENSGT00900000141073 ENSGT00940000158044.a #31 ENSGT00940000153380.D ENSGT00940000160711 ENSGT00390000006265.b ENSGT00390000017663 American bison MODERN SPECIES 1552 ENSBBBG00000005897 #20 COMT (ENSBBBG00000022211) #23 ARVCF (ENSBBBG00000022191) #24 ENSBBBG00000022136 #24 Bos ANCESTRAL SPECIES 14 ENSGT00940000162226 ENSGT00390000009387 ENSGT00940000162536 ENSGT00550000074856 ENSGT00550000074919 #10 ENSGT00390000010239 #11 ENSGT00390000002511 #12 ENSGT00390000002408 #13 ENSGT00390000009662 #14 ENSGT00940000161769 #15 ENSGT00940000159913 ENSGT00530000064244.b #17 ENSGT00940000154816.a.b #18 ENSGT00390000018606 #19 ENSGT00940000158832 #20 ENSGT00940000155317.b #23 ENSGT00940000157027 #24 ENSGT00390000012733 #25 ENSGT00390000015977 #26 ENSGT00530000063723.a #28 ENSGT00970000193655 ENSGT00900000141073 ENSGT00940000158044.a #31 ENSGT00940000153380.D ENSGT00940000160711 ENSGT00390000006265.b ENSGT00390000017663 Bos_b ANCESTRAL SPECIES 13 ENSGT00940000162226 ENSGT00390000009387 ENSGT00940000162536 ENSGT00550000074856 ENSGT00550000074919 #10 ENSGT00390000010239 #11 ENSGT00390000002511 #12 ENSGT00390000002408 #13 ENSGT00390000009662 #14 ENSGT00940000161769 #15 ENSGT00940000159913 ENSGT00530000064244.b #17 ENSGT00940000154816.a.b #18 ENSGT00390000018606 #19 ENSGT00940000158832 #20 ENSGT00940000155317.b #23 ENSGT00940000157027 #24 ENSGT00390000012733 #25 ENSGT00390000015977 #26 ENSGT00970000193655 ENSGT00530000063723.a #28 ENSGT00900000141073 ENSGT00940000158044.a #31 ENSGT00940000153380.D ENSGT00940000160711 ENSGT00390000006265.b ENSGT00390000017663 Hybrid Bos Indicus MODERN SPECIES 8 TSSK2 (ENSBIXG00005017076) ESS2 (ENSBIXG00005017113) GSC2 (ENSBIXG00005017143) SLC25A1 (ENSBIXG00005017171) HIRA (ENSBIXG00005017294) #10 MRPL40 (ENSBIXG00005017318) #11 ENSBIXG00005017342 #12 UFD1 (ENSBIXG00005017395) #13 CDC45 (ENSBIXG00005017557) #14 CLDN5 (ENSBIXG00005002859) #15 SEPTIN5 (ENSBIXG00005017620) GP1BB (ENSBIXG00005017653) #17 TBX1 (ENSBIXG00005017714) #18 GNB1L (ENSBIXG00005017779) #19 ENSBIXG00005017845 #20 ENSBIXG00005017867 #23 ARVCF (ENSBIXG00005002918) #24 TANGO2 (ENSBIXG00005018016) #25 DGCR8 (ENSBIXG00005002928) #26 ENSBIXG00005018056 TRMT2A (ENSBIXG00005018069) #28 RANBP1 (ENSBIXG00005018083) ZDHHC8 (ENSBIXG00005005852) #31 CCDC188 (ENSBIXG00005018144) RTN4R (ENSBIXG00005018165) ENSBIXG00005018339 ENSBIXG00005018370 Cow MODERN SPECIES 8 TSSK2 (ENSBTAG00000048123) ESS2 (ENSBTAG00000018534) GSC2 (ENSBTAG00000047526) SLC25A1 (ENSBTAG00000008528) HIRA (ENSBTAG00000019888) #10 MRPL40 (ENSBTAG00000019891) #11 ENSBTAG00000048885 #12 UFD1 (ENSBTAG00000004284) #13 CDC45 (ENSBTAG00000004286) #14 CLDN5 (ENSBTAG00000022020) #15 SEPTIN5 (ENSBTAG00000008320) GP1BB (ENSBTAG00000039059) #17 TBX1 (ENSBTAG00000048862) #18 GNB1L (ENSBTAG00000021052) #19 TXNRD2 (ENSBTAG00000043581) #20 COMT (ENSBTAG00000019516) #23 ARVCF (ENSBTAG00000001473) #24 TANGO2 (ENSBTAG00000012421) #25 DGCR8 (ENSBTAG00000019869) #26 TRMT2A (ENSBTAG00000019871) #28 ENSBTAG00000049062 RANBP1 (ENSBTAG00000006656) ZDHHC8 (ENSBTAG00000006657) #31 CCDC188 (ENSBTAG00000047626) RTN4R (ENSBTAG00000046677) PRODH (ENSBTAG00000047676) DGCR6L (ENSBTAG00000047299) ENSBTAG00000050485 ENSBTAG00000049878 Bos_a ANCESTRAL SPECIES 56 ENSGT00940000162226 ENSGT00390000009387 ENSGT00940000162536 ENSGT00550000074856 ENSGT00550000074919 #10 ENSGT00390000010239 #11 ENSGT00390000002511 #12 ENSGT00390000002408 #13 ENSGT00390000009662 #14 ENSGT00940000161769 #15 ENSGT00940000159913 ENSGT00530000064244.b #17 ENSGT00940000154816.a.b #18 ENSGT00390000018606 #19 ENSGT00940000158832 #20 ENSGT00940000155317.b #23 ENSGT00940000157027 #24 ENSGT00390000012733 #25 ENSGT00390000015977 #26 ENSGT00530000063723.a #28 ENSGT00970000193655 ENSGT00900000141073 ENSGT00940000158044.a #31 ENSGT00940000153380.D ENSGT00940000160711 ENSGT00390000006265.b ENSGT00390000017663 Domestic yak MODERN SPECIES 7 TSSK1B (ENSBGRG00000019032) ENSBGRG00000019056 GSC2 (ENSBGRG00000019298) SLC25A1 (ENSBGRG00000019365) HIRA (ENSBGRG00000019430) #10 MRPL40 (ENSBGRG00000019620) #11 ENSBGRG00000019661 #12 UFD1 (ENSBGRG00000019757) #13 CDC45 (ENSBGRG00000020248) #14 CLDN5 (ENSBGRG00000020524) #15 SEPTIN5 (ENSBGRG00000020562) GP1BB (ENSBGRG00000020762) #17 TBX1 (ENSBGRG00000020801) #18 GNB1L (ENSBGRG00000020901) #19 TXNRD2 (ENSBGRG00000021002) #20 COMT (ENSBGRG00000021775) #23 ARVCF (ENSBGRG00000021889) #24 ENSBGRG00000022547 #25 DGCR8 (ENSBGRG00000022686) #26 TRMT2A (ENSBGRG00000022963) #28 ZDHHC8 (ENSBGRG00000023060) #31 CCDC188 (ENSBGRG00000023173) RTN4R (ENSBGRG00000023275) ENSBGRG00000023329 ENSBGRG00000023569 Wild yak MODERN SPECIES 1508 ENSBMUG00000005309 DGCR2 (ENSBMUG00000005302) TSSK1B (ENSBMUG00000005274) TSSK2 (ENSBMUG00000005265) ESS2 (ENSBMUG00000005254) SLC25A1 (ENSBMUG00000005243) HIRA (ENSBMUG00000005218) #10 MRPL40 (ENSBMUG00000005134) #11 UFD1 (ENSBMUG00000005120) #13 CDC45 (ENSBMUG00000005095) #14 CLDN5 (ENSBMUG00000005027) #15 SEPTIN5 (ENSBMUG00000005009) ENSBMUG00000004961 GNB1L (ENSBMUG00000004935) #19 TXNRD2 (ENSBMUG00000004909) #20 ENSBMUG00000004884 #23 ARVCF (ENSBMUG00000004820) #24 TANGO2 (ENSBMUG00000004722) #25 DGCR8 (ENSBMUG00000004683) #26 TRMT2A (ENSBMUG00000004612) #28 ENSBMUG00000004592 RANBP1 (ENSBMUG00000004577) ENSBMUG00000004542 #31 ENSBMUG00000004536 Laurasiatheria_b ANCESTRAL SPECIES 13 ENSGT00940000162536 ENSGT00550000074856 ENSGT00950000183166.a.b ENSGT00550000074919 #10 ENSGT00390000010239 #11 ENSGT00390000002511 #12 ENSGT00390000002408 #13 ENSGT00390000009662 #14 ENSGT00940000161769 #15 ENSGT00940000159913 ENSGT00530000064244.b #17 ENSGT00940000154816.a.b #18 ENSGT00390000018606 #19 ENSGT00940000166811 ENSGT00940000158832 #20 ENSGT00940000155317.b #23 ENSGT00940000157027 #24 ENSGT00390000012733 #25 ENSGT00390000015977 #26 ENSGT00530000063723.a #28 ENSGT00900000141073 ENSGT00940000158044.a #31 ENSGT00940000153380.D ENSGT00940000160711 ENSGT00390000006265.b ENSGT00390000017663 ENSGT01030000234510.a.a.b ENSGT01030000234510.a.a.a.a.a.a ENSGT00390000002368 ENSGT00940000156554 ENSGT00390000000724.c.b Laurasiatheria_c ANCESTRAL SPECIES 21 ENSGT00390000009387 ENSGT00940000162536 ENSGT00550000074856 ENSGT00950000183166.a.b ENSGT00550000074919 #10 ENSGT00390000010239 #11 ENSGT00390000002511 #12 ENSGT00390000002408 #13 ENSGT00390000009662 #14 ENSGT00940000161769 #15 ENSGT00940000159913 ENSGT00530000064244.b #17 ENSGT00940000154816.a.b #18 ENSGT00390000018606 #19 ENSGT00940000158832 #20 ENSGT00940000155317.b #23 ENSGT00940000157027 #24 ENSGT00390000012733 #25 ENSGT00390000015977 #26 ENSGT00530000063723.a #28 ENSGT00900000141073 ENSGT00940000158044.a #31 ENSGT00940000153380.D ENSGT00940000160711 ENSGT00390000006265.b ENSGT00390000017663 Equus DUPLICATION Equus ANCESTRAL SPECIES 67 ENSGT00390000009387 ENSGT00940000162536 ENSGT00550000074856 ENSGT00950000183166.a.b ENSGT00550000074919 #10 ENSGT00390000010239 #11 ENSGT00390000002511 #12 ENSGT00390000002408 #13 ENSGT00390000009662 #14 ENSGT00940000161769 #15 ENSGT00940000159913 ENSGT00530000064244.b #17 ENSGT00940000154816.a.b #18 ENSGT00390000018606 #19 ENSGT00940000158832 #20 ENSGT00940000155317.b.k #23 ENSGT00940000157027 #24 ENSGT00390000012733 #25 ENSGT00390000015977 #26 ENSGT00530000063723.a #28 ENSGT00900000141073 ENSGT00940000158044.a #31 ENSGT00940000153380.D ENSGT00940000160711 ENSGT00390000006265.b ENSGT00390000017663 Donkey MODERN SPECIES 28 TSSK2 (ENSEASG00005006134) ESS2 (ENSEASG00005006119) GSC2 (ENSEASG00005006115) SLC25A1 (ENSEASG00005006114) HIRA (ENSEASG00005010492) #10 ENSEASG00005027851 #11 C22orf39 (ENSEASG00005010494) #12 UFD1 (ENSEASG00005010495) #13 CDC45 (ENSEASG00005010496) #14 CLDN5 (ENSEASG00005031236) #15 SEPTIN5 (ENSEASG00005010502) GP1BB (ENSEASG00005010503) #17 TBX1 (ENSEASG00005010505) #18 GNB1L (ENSEASG00005010507) #19 TXNRD2 (ENSEASG00005010510) #20 ENSEASG00005035506 #23 ENSEASG00005010514 #23 ARVCF (ENSEASG00005010516) #24 TANGO2 (ENSEASG00005010518) #25 DGCR8 (ENSEASG00005010521) #26 TRMT2A (ENSEASG00005010524) #28 RANBP1 (ENSEASG00005010526) ZDHHC8 (ENSEASG00005010529) #31 CCDC188 (ENSEASG00005028385) RTN4R (ENSEASG00005010530) ENSEASG00005010531 ENSEASG00005037006 ENSEASG00005025688 ENSEASG00005029176 ENSEASG00005029041 ENSEASG00005026438 Horse MODERN SPECIES 29 GSC2 (ENSECAG00000029926) ENSECAG00000021409 CLTCL1 (ENSECAG00000033498) ENSECAG00000051965 ENSECAG00000056680 ENSECAG00000045279 MRPL40 (ENSECAG00000009876) #11 HIRA (ENSECAG00000000286) #10 UFD1 (ENSECAG00000011062) #13 CDC45 (ENSECAG00000011788) #14 CLDN5 (ENSECAG00000047513) #15 SEPTIN5 (ENSECAG00000020718) TBX1 (ENSECAG00000035745) #18 GNB1L (ENSECAG00000026940) #19 TXNRD2 (ENSECAG00000026879) #20 ENSECAG00000005359 #23 ARVCF (ENSECAG00000026951) #24 TANGO2 (ENSECAG00000008697) #25 ENSECAG00000045428 DGCR8 (ENSECAG00000009295) #26 TRMT2A (ENSECAG00000012384) #28 RANBP1 (ENSECAG00000017197) ZDHHC8 (ENSECAG00000000562) #31 CCDC188 (ENSECAG00000030675) RTN4R (ENSECAG00000004778) ENSECAG00000038666 ENSECAG00000026825 Equus ANCESTRAL SPECIES ENSGT00940000155317.b.l #23 Donkey MODERN SPECIES 28 ESS2 (ENSEASG00005006119) GSC2 (ENSEASG00005006115) SLC25A1 (ENSEASG00005006114) HIRA (ENSEASG00005010492) #10 ENSEASG00005027851 #11 C22orf39 (ENSEASG00005010494) #12 UFD1 (ENSEASG00005010495) #13 CDC45 (ENSEASG00005010496) #14 CLDN5 (ENSEASG00005031236) #15 SEPTIN5 (ENSEASG00005010502) GP1BB (ENSEASG00005010503) #17 TBX1 (ENSEASG00005010505) #18 GNB1L (ENSEASG00005010507) #19 TXNRD2 (ENSEASG00005010510) #20 ENSEASG00005035506 #23 ENSEASG00005010514 #23 ARVCF (ENSEASG00005010516) #24 TANGO2 (ENSEASG00005010518) #25 DGCR8 (ENSEASG00005010521) #26 TRMT2A (ENSEASG00005010524) #28 RANBP1 (ENSEASG00005010526) ZDHHC8 (ENSEASG00005010529) #31 CCDC188 (ENSEASG00005028385) RTN4R (ENSEASG00005010530) ENSEASG00005010531 ENSEASG00005037006 ENSEASG00005025688 ENSEASG00005029176 ENSEASG00005029041 ENSEASG00005026438 ENSEASG00005034784 Chiroptera ANCESTRAL SPECIES 74 ENSGT00390000009387 ENSGT00940000162536 ENSGT00550000074856 ENSGT00950000183166.a.b ENSGT00550000074919 #10 ENSGT00390000010239 #11 ENSGT00390000002511 #12 ENSGT00390000002408 #13 ENSGT00390000009662 #14 ENSGT00940000161769 #15 ENSGT00940000159913 ENSGT00530000064244.b #17 ENSGT00940000154816.a.b #18 ENSGT00390000018606 #19 ENSGT00940000158832 #20 ENSGT00940000155317.b #23 ENSGT00940000157027 #24 ENSGT00390000012733 #25 ENSGT00390000015977 #26 ENSGT00530000063723.a #28 ENSGT00900000141073 ENSGT00940000158044.a #31 ENSGT00940000153380.D ENSGT00940000160711 ENSGT00390000006265.b ENSGT00390000017663 Megabat MODERN SPECIES 3590 COMT (ENSPVAG00000015691) #23 ARVCF (ENSPVAG00000015692) #24 TANGO2 (ENSPVAG00000015693) #25 DGCR8 (ENSPVAG00000015694) #26 TRMT2A (ENSPVAG00000015696) #28 RANBP1 (ENSPVAG00000015699) ZDHHC8 (ENSPVAG00000015700) #31 RTN4R (ENSPVAG00000015703) ENSPVAG00000015704 Microchiroptera ANCESTRAL SPECIES 9 ENSGT00390000009387 ENSGT00940000162536 ENSGT00550000074856 ENSGT00950000183166.a.b ENSGT00550000074919 #10 ENSGT00390000010239 #11 ENSGT00390000002511 #12 ENSGT00390000002408 #13 ENSGT00390000009662 #14 ENSGT00940000161769 #15 ENSGT00940000159913 ENSGT00530000064244.b #17 ENSGT00940000154816.a.b #18 ENSGT00390000018606 #19 ENSGT00940000158832 #20 ENSGT00940000155317.b #23 ENSGT00940000157027 #24 ENSGT00390000012733 #25 ENSGT00390000015977 #26 ENSGT00530000063723.a #28 ENSGT00900000141073 ENSGT00940000158044.a #31 ENSGT00940000153380.D ENSGT00940000160711 ENSGT00390000006265.b ENSGT00390000017663 ENSGT01010000222320.a.a.a.a.a ENSGT01010000222320.a.b.b ENSGT01010000222320.a.a.b.a.c ENSGT01010000222320.a.a.b.a.d.b.b ENSGT01040000240383.a.b.g.a Microbat MODERN SPECIES 1213 ENSMLUG00000006894 DGCR2 (ENSMLUG00000007207) ENSMLUG00000007238 TSSK2 (ENSMLUG00000007273) ESS2 (ENSMLUG00000007286) SLC25A1 (ENSMLUG00000030464) HIRA (ENSMLUG00000002434) #10 ENSMLUG00000002456 #11 ENSMLUG00000002466 #13 CDC45 (ENSMLUG00000002478) #14 CLDN5 (ENSMLUG00000002502) #15 GP1BB (ENSMLUG00000024066) #17 SEPTIN5 (ENSMLUG00000002506) GNB1L (ENSMLUG00000030309) #19 TXNRD2 (ENSMLUG00000014904) #20 COMT (ENSMLUG00000009290) #23 ARVCF (ENSMLUG00000017529) #24 ENSMLUG00000022223 #25 Greater horseshoe bat MODERN SPECIES 17 ESS2 (ENSRFEG00010020441) GSC2 (ENSRFEG00010020469) SLC25A1 (ENSRFEG00010020494) CLTCL1 (ENSRFEG00010020555) HIRA (ENSRFEG00010020801) #10 MRPL40 (ENSRFEG00010021001) #11 C22orf39 (ENSRFEG00010021008) #12 UFD1 (ENSRFEG00010021022) #13 CDC45 (ENSRFEG00010021045) #14 CLDN5 (ENSRFEG00010021064) #15 SEPTIN5 (ENSRFEG00010021082) GP1BB (ENSRFEG00010021138) #17 TBX1 (ENSRFEG00010021166) #18 GNB1L (ENSRFEG00010021187) #19 TXNRD2 (ENSRFEG00010021251) #20 COMT (ENSRFEG00010021372) #23 ARVCF (ENSRFEG00010021395) #24 TANGO2 (ENSRFEG00010021444) #25 DGCR8 (ENSRFEG00010021501) #26 TRMT2A (ENSRFEG00010021528) #28 RANBP1 (ENSRFEG00010021579) ZDHHC8 (ENSRFEG00010021616) #31 CCDC188 (ENSRFEG00010006176) RTN4R (ENSRFEG00010006249) ENSRFEG00010006364 ENSRFEG00010006433 ENSRFEG00010006494 ENSRFEG00010006511 OR8B4 (ENSRFEG00010006521) ENSRFEG00010006534 ENSRFEG00010006563 Carnivora ANCESTRAL SPECIES 13 ENSGT00940000162536 ENSGT00550000074856 ENSGT00950000183166.a.b ENSGT00550000074919 #10 ENSGT00390000010239 #11 ENSGT00390000002511 #12 ENSGT00390000002408 #13 ENSGT00390000009662 #14 ENSGT00940000161769 #15 ENSGT00940000159913 ENSGT00530000064244.b #17 ENSGT00940000154816.a.b #18 ENSGT00390000018606 #19 ENSGT00940000166811 ENSGT00940000158832 #20 ENSGT00940000155317.b #23 ENSGT00940000157027 #24 ENSGT00390000012733 #25 ENSGT00390000015977 #26 ENSGT00530000063723.a #28 ENSGT00900000141073 ENSGT00940000158044.a #31 ENSGT00940000153380.D ENSGT00940000160711 ENSGT00390000006265.b ENSGT00390000017663 ENSGT01030000234510.a.a.b ENSGT01030000234510.a.a.a.a.a.a ENSGT00390000002368 ENSGT00940000156554 ENSGT00390000000724.c.b Felidae ANCESTRAL SPECIES 20 ENSGT00390000009387 ENSGT00940000162536 ENSGT00550000074856 ENSGT00950000183166.a.b ENSGT00550000074919 #10 ENSGT00390000010239 #11 ENSGT00390000002511 #12 ENSGT00390000002408 #13 ENSGT00390000009662 #14 ENSGT00940000161769 #15 ENSGT00940000159913 ENSGT00530000064244.b #17 ENSGT00940000154816.a.b #18 ENSGT00390000018606 #19 ENSGT00940000158832 #20 ENSGT00940000155317.b #23 ENSGT00940000157027 #24 ENSGT00390000012733 #25 ENSGT00390000015977 #26 ENSGT00530000063723.a #28 ENSGT00900000141073 ENSGT00940000158044.a #31 ENSGT00940000153380.D ENSGT00940000160711 ENSGT00390000006265.b ENSGT00390000017663 ENSGT00950000183200.A.a.b.b.d.a ENSGT00940000156871 ENSGT00990000203589.a.a ENSGT00940000154184.A ENSGT00940000158425 Panthera ANCESTRAL SPECIES 35 ENSGT00390000009387 ENSGT00940000162536 ENSGT00550000074856 ENSGT00950000183166.a.b ENSGT00550000074919 #10 ENSGT00390000010239 #11 ENSGT00390000002511 #12 ENSGT00390000002408 #13 ENSGT00390000009662 #14 ENSGT00940000161769 #15 ENSGT00940000159913 ENSGT00530000064244.b #17 ENSGT00940000154816.a.b #18 ENSGT00390000018606 #19 ENSGT00940000158832 #20 ENSGT00940000155317.b #23 ENSGT00940000157027 #24 ENSGT00390000012733 #25 ENSGT00390000015977 #26 ENSGT00530000063723.a #28 ENSGT00900000141073 ENSGT00940000158044.a #31 ENSGT00940000153380.D ENSGT00940000160711 ENSGT00390000006265.b ENSGT00390000017663 ENSGT00950000183200.A.a.b.b.d.a ENSGT00940000153474.a.b.a.b.b ENSGT00940000153520.d.a.b.e.c.a.b ENSGT00940000161517.D ENSGT00940000153474.b.d.a.b Tiger MODERN SPECIES 355 ENSPTIG00000015403 #18 GNB1L (ENSPTIG00000015570) #19 TXNRD2 (ENSPTIG00000017883) #20 COMT (ENSPTIG00000021113) #23 ARVCF (ENSPTIG00000021324) #24 TANGO2 (ENSPTIG00000007111) #25 DGCR8 (ENSPTIG00000010980) #26 TRMT2A (ENSPTIG00000014523) #28 RANBP1 (ENSPTIG00000016192) CCDC188 (ENSPTIG00000019384) RTN4R (ENSPTIG00000019691) ENSPTIG00000019761 ENSPTIG00000008722 PIWIL3 (ENSPTIG00000009971) Panthera_a ANCESTRAL SPECIES 62 ENSGT00390000009387 ENSGT00940000162536 ENSGT00550000074856 ENSGT00950000183166.a.b ENSGT00550000074919 #10 ENSGT00390000010239 #11 ENSGT00390000002511 #12 ENSGT00390000002408 #13 ENSGT00390000009662 #14 ENSGT00940000161769 #15 ENSGT00940000159913 ENSGT00530000064244.b #17 ENSGT00940000154816.a.b #18 ENSGT00390000018606 #19 ENSGT00940000158832 #20 ENSGT00940000155317.b #23 ENSGT00940000157027 #24 ENSGT00390000012733 #25 ENSGT00390000015977 #26 ENSGT00530000063723.a #28 ENSGT00900000141073 ENSGT00940000158044.a #31 ENSGT00940000153380.D ENSGT00940000160711 ENSGT00390000006265.b ENSGT00390000017663 ENSGT00950000183200.A.a.b.b.d.a lion MODERN SPECIES 12 GSC2 (ENSPLOG00000016795) ENSPLOG00000016834 SLC25A1 (ENSPLOG00000016874) CLTCL1 (ENSPLOG00000016947) HIRA (ENSPLOG00000017572) #10 MRPL40 (ENSPLOG00000018056) #11 C22orf39 (ENSPLOG00000018074) #12 UFD1 (ENSPLOG00000018116) #13 CDC45 (ENSPLOG00000018278) #14 CLDN5 (ENSPLOG00000018318) #15 SEPTIN5 (ENSPLOG00000018341) GP1BB (ENSPLOG00000018495) #17 TBX1 (ENSPLOG00000018535) #18 GNB1L (ENSPLOG00000018672) #19 TXNRD2 (ENSPLOG00000018769) #20 COMT (ENSPLOG00000019271) #23 ARVCF (ENSPLOG00000019377) #24 TANGO2 (ENSPLOG00000019874) #25 DGCR8 (ENSPLOG00000019913) #26 TRMT2A (ENSPLOG00000019989) #28 RANBP1 (ENSPLOG00000020134) ZDHHC8 (ENSPLOG00000020202) #31 CCDC188 (ENSPLOG00000020243) RTN4R (ENSPLOG00000020294) ENSPLOG00000020330 ENSPLOG00000020418 ENSPLOG00000020443 IGLV5-52 (ENSPLOG00000020540) SLC5A4 (ENSPLOG00000020553) SLC5A1 (ENSPLOG00000020605) YWHAH (ENSPLOG00000020701) leopard MODERN SPECIES 178 ESS2 (ENSPPRG00000006405) GSC2 (ENSPPRG00000006381) SLC25A1 (ENSPPRG00000006372) CLTCL1 (ENSPPRG00000006295) HIRA (ENSPPRG00000005445) #10 MRPL40 (ENSPPRG00000004672) #11 C22orf39 (ENSPPRG00000004565) #12 UFD1 (ENSPPRG00000004497) #13 CDC45 (ENSPPRG00000004159) #14 CLDN5 (ENSPPRG00000022046) #15 SEPTIN5 (ENSPPRG00000002930) GP1BB (ENSPPRG00000002736) #17 TBX1 (ENSPPRG00000002705) #18 GNB1L (ENSPPRG00000002627) #19 TXNRD2 (ENSPPRG00000000978) #20 COMT (ENSPPRG00000023206) #23 ARVCF (ENSPPRG00000023371) #24 TANGO2 (ENSPPRG00000022392) #25 DGCR8 (ENSPPRG00000018958) #26 TRMT2A (ENSPPRG00000016789) #28 RANBP1 (ENSPPRG00000015479) ZDHHC8 (ENSPPRG00000014676) #31 CCDC188 (ENSPPRG00000013446) RTN4R (ENSPPRG00000013418) ENSPPRG00000013092 ENSPPRG00000011401 PIWIL3 (ENSPPRG00000011117) Cat MODERN SPECIES 243 TSSK2 (ENSFCAG00000009531) ESS2 (ENSFCAG00000029613) GSC2 (ENSFCAG00000042776) SLC25A1 (ENSFCAG00000009533) CLTCL1 (ENSFCAG00000002747) MRPL40 (ENSFCAG00000002752) #11 HIRA (ENSFCAG00000002750) #10 UFD1 (ENSFCAG00000004294) #13 CDC45 (ENSFCAG00000004297) #14 CLDN5 (ENSFCAG00000029093) #15 SEPTIN5 (ENSFCAG00000035936) GP1BB (ENSFCAG00000032253) #17 TBX1 (ENSFCAG00000005446) #18 GNB1L (ENSFCAG00000018235) #19 TXNRD2 (ENSFCAG00000002682) #20 COMT (ENSFCAG00000002684) #23 ARVCF (ENSFCAG00000002686) #24 TANGO2 (ENSFCAG00000002688) #25 DGCR8 (ENSFCAG00000006801) #26 TRMT2A (ENSFCAG00000004170) #28 RANBP1 (ENSFCAG00000004171) ZDHHC8 (ENSFCAG00000004172) #31 CCDC188 (ENSFCAG00000029025) RTN4R (ENSFCAG00000032911) ENSFCAG00000023783 ENSFCAG00000028790 ENSFCAG00000052978 ENSFCAG00000006400 ENSFCAG00000047386 SGSM1 (ENSFCAG00000029431) LHFPL7 (ENSFCAG00000013784) Caniformia ANCESTRAL SPECIES 9 ENSGT00940000162536 ENSGT00550000074856 ENSGT00950000183166.a.b ENSGT00550000074919 #10 ENSGT00390000010239 #11 ENSGT00390000002511 #12 ENSGT00390000002408 #13 ENSGT00390000009662 #14 ENSGT00940000161769 #15 ENSGT00940000159913 ENSGT00530000064244.b #17 ENSGT00940000154816.a.b #18 ENSGT00390000018606 #19 ENSGT00940000166811 ENSGT00940000158832 #20 ENSGT00940000155317.b #23 ENSGT00940000157027 #24 ENSGT00390000012733 #25 ENSGT00390000015977 #26 ENSGT00530000063723.a #28 ENSGT00900000141073 ENSGT00940000158044.a #31 ENSGT00940000153380.D ENSGT00940000160711 ENSGT00390000006265.b ENSGT00390000017663 ENSGT01030000234510.a.a.b ENSGT01030000234510.a.a.a.a.a.a ENSGT00390000002368 ENSGT00940000156554 ENSGT00390000000724.c.b Canidae ANCESTRAL SPECIES 55 ENSGT00940000162536 ENSGT00550000074856 ENSGT00950000183166.a.b ENSGT00550000074919 #10 ENSGT00390000010239 #11 ENSGT00390000002511 #12 ENSGT00390000002408 #13 ENSGT00390000009662 #14 ENSGT00940000161769 #15 ENSGT00940000159913 ENSGT00530000064244.b #17 ENSGT00940000154816.a.b #18 ENSGT00390000018606 #19 ENSGT00940000166811 ENSGT00940000158832 #20 ENSGT00940000155317.b #23 ENSGT00940000157027 #24 ENSGT00390000012733 #25 ENSGT00390000015977 #26 ENSGT00530000063723.a #28 ENSGT00900000141073 ENSGT00940000158044.a #31 ENSGT00940000153380.D ENSGT00940000160711 ENSGT00390000006265.b ENSGT00390000017663 Red fox MODERN SPECIES 174 TSSK2 (ENSVVUG00000023783) ESS2 (ENSVVUG00000023785) SLC25A1 (ENSVVUG00000023788) CLTCL1 (ENSVVUG00000023881) HIRA (ENSVVUG00000025357) #10 MRPL40 (ENSVVUG00000025360) #11 CUNH22orf39 (ENSVVUG00000025361) #12 UFD1 (ENSVVUG00000025364) #13 CDC45 (ENSVVUG00000025367) #14 CLDN5 (ENSVVUG00000025372) #15 SEPTIN5 (ENSVVUG00000025380) ENSVVUG00000025383 #17 ENSVVUG00000025387 #18 GNB1L (ENSVVUG00000025391) #19 TXNRD2 (ENSVVUG00000025396) #20 COMT (ENSVVUG00000025402) #23 ARVCF (ENSVVUG00000025405) #24 TANGO2 (ENSVVUG00000025407) #25 DGCR8 (ENSVVUG00000025413) #26 TRMT2A (ENSVVUG00000025420) #28 RANBP1 (ENSVVUG00000025421) ZDHHC8 (ENSVVUG00000025423) #31 CCDC188 (ENSVVUG00000025424) RTN4R (ENSVVUG00000025427) ENSVVUG00000025430 ENSVVUG00000025464 ENSVVUG00000025466 Canis_lupus ANCESTRAL SPECIES 43 ENSGT00940000162536 ENSGT00550000074856 ENSGT00950000183166.a.b ENSGT00550000074919 #10 ENSGT00390000010239 #11 ENSGT00390000002511 #12 ENSGT00390000002408 #13 ENSGT00390000009662 #14 ENSGT00940000161769 #15 ENSGT00940000159913 ENSGT00530000064244.b #17 ENSGT00940000154816.a.b #18 ENSGT00390000018606 #19 ENSGT00940000166811 ENSGT00940000158832 #20 ENSGT00940000155317.b #23 ENSGT00940000157027 #24 ENSGT00390000012733 #25 ENSGT00390000015977 #26 ENSGT00530000063723.a #28 ENSGT00900000141073 ENSGT00940000158044.a #31 ENSGT00940000153380.D ENSGT00940000160711 ENSGT00390000006265.b ENSGT00390000017663 ENSGT01030000234531.A.a.eb ENSGT00940000161017 ENSGT01060000249414 ENSGT00940000153307.c.a.m.a.e.a ENSGT00940000163200 Dingo MODERN SPECIES 108 ESS2 (ENSCAFG00020010579) GSC2 (ENSCAFG00020010577) SLC25A1 (ENSCAFG00020010571) CLTCL1 (ENSCAFG00020008131) HIRA (ENSCAFG00020007998) #10 MRPL40 (ENSCAFG00020007995) #11 C22orf39 (ENSCAFG00020007992) #12 UFD1 (ENSCAFG00020007988) #13 CDC45 (ENSCAFG00020007915) #14 CLDN5 (ENSCAFG00020007906) #15 SEPTIN5 (ENSCAFG00020007897) GP1BB (ENSCAFG00020007895) #17 TBX1 (ENSCAFG00020007879) #18 GNB1L (ENSCAFG00020007876) #19 TXNRD2 (ENSCAFG00020007857) #20 COMT (ENSCAFG00020007849) #23 ARVCF (ENSCAFG00020007804) #24 TANGO2 (ENSCAFG00020007792) #25 DGCR8 (ENSCAFG00020007769) #26 TRMT2A (ENSCAFG00020007738) #28 RANBP1 (ENSCAFG00020007723) ZDHHC8 (ENSCAFG00020007710) #31 ENSCAFG00020007701 RTN4R (ENSCAFG00020007696) ENSCAFG00020007638 ENSCAFG00020007629 ENSCAFG00020007599 VPREB1 (ENSCAFG00020007589) ENSCAFG00020007586 ZNF70 (ENSCAFG00020007584) VPREB3 (ENSCAFG00020007580) Dog MODERN SPECIES 18 ESS2 (ENSCAFG00845030127) GSC2 (ENSCAFG00845030114) SLC25A1 (ENSCAFG00845030106) CLTCL1 (ENSCAFG00845030003) HIRA (ENSCAFG00845029669) #10 ENSCAFG00845029562 #11 C26H22orf39 (ENSCAFG00845029541) #12 UFD1 (ENSCAFG00845029515) #13 CDC45 (ENSCAFG00845029448) #14 CLDN5 (ENSCAFG00845029410) #15 SEPTIN5 (ENSCAFG00845029335) ENSCAFG00845029160 #18 GNB1L (ENSCAFG00845029046) #19 ENSCAFG00845028996 TXNRD2 (ENSCAFG00845028764) #20 COMT (ENSCAFG00845028665) #23 ARVCF (ENSCAFG00845028288) #24 TANGO2 (ENSCAFG00845028132) #25 DGCR8 (ENSCAFG00845027785) #26 TRMT2A (ENSCAFG00845027597) #28 ENSCAFG00845027449 #30 ZDHHC8 (ENSCAFG00845027068) #31 CCDC188 (ENSCAFG00845026820) RTN4R (ENSCAFG00845026751) ENSCAFG00845026581 ENSCAFG00845026452 ENSCAFG00845026346 ENSCAFG00845026303 ENSCAFG00845026273 ENSCAFG00845026246 ZNF70 (ENSCAFG00845026216) Caniformia_b ANCESTRAL SPECIES 25 ENSGT00390000009387 ENSGT00940000162536 ENSGT00550000074856 ENSGT00950000183166.a.b ENSGT00550000074919 #10 ENSGT00390000010239 #11 ENSGT00390000002511 #12 ENSGT00390000002408 #13 ENSGT00390000009662 #14 ENSGT00940000161769 #15 ENSGT00940000159913 ENSGT00530000064244.b #17 ENSGT00940000154816.a.b #18 ENSGT00390000018606 #19 ENSGT00940000158832 #20 ENSGT00940000155317.b #23 ENSGT00940000157027 #24 ENSGT00390000012733 #25 ENSGT00390000015977 #26 ENSGT00530000063723.a #28 ENSGT00900000141073 ENSGT00940000158044.a #31 ENSGT00940000153380.D ENSGT00940000160711 ENSGT00390000006265.b ENSGT00390000017663 ENSGT01030000234510.a.a.b ENSGT01030000234510.a.a.a.a.a.a ENSGT00390000002368 ENSGT00940000156554 ENSGT00390000000724.c.b Mustelinae ANCESTRAL SPECIES 5 ENSGT00390000009387 ENSGT00940000162536 ENSGT00550000074856 ENSGT00950000183166.a.b ENSGT00550000074919 #10 ENSGT00390000010239 #11 ENSGT00390000002511 #12 ENSGT00390000002408 #13 ENSGT00390000009662 #14 ENSGT00940000161769 #15 ENSGT00940000159913 ENSGT00530000064244.b #17 ENSGT00940000154816.a.b #18 ENSGT00390000018606 #19 ENSGT00940000158832 #20 ENSGT00940000155317.b #23 ENSGT00940000157027 #24 ENSGT00390000012733 #25 ENSGT00390000015977 #26 ENSGT00530000063723.a #28 ENSGT00900000141073 ENSGT00940000158044.a #31 ENSGT00940000153380.D ENSGT00940000160711 ENSGT00390000006265.b ENSGT00390000017663 ENSGT01030000234510.a.a.b ENSGT01030000234510.a.a.a.a.a.a ENSGT00390000002368 ENSGT00940000156554 ENSGT00390000000724.c.b Ferret MODERN SPECIES 170 TSSK1B (ENSMPUG00000019875) TSSK2 (ENSMPUG00000019876) ESS2 (ENSMPUG00000003809) SLC25A1 (ENSMPUG00000003820) CLTCL1 (ENSMPUG00000003829) HIRA (ENSMPUG00000003849) #10 MRPL40 (ENSMPUG00000003865) #11 UFD1 (ENSMPUG00000003872) #13 CDC45 (ENSMPUG00000003884) #14 CLDN5 (ENSMPUG00000019877) #15 SEPTIN5 (ENSMPUG00000003893) GP1BB (ENSMPUG00000019878) #17 ENSMPUG00000003900 #18 GNB1L (ENSMPUG00000003907) #19 TXNRD2 (ENSMPUG00000003930) #20 COMT (ENSMPUG00000003944) #23 ARVCF (ENSMPUG00000003983) #24 TANGO2 (ENSMPUG00000003998) #25 DGCR8 (ENSMPUG00000004005) #26 TRMT2A (ENSMPUG00000004015) #28 ENSMPUG00000004127 ZDHHC8 (ENSMPUG00000004176) #31 ENSMPUG00000004263 RTN4R (ENSMPUG00000004270) ENSMPUG00000004273 ENSMPUG00000004280 MC2R (ENSMPUG00000019879) MC5R (ENSMPUG00000019880) RNMT (ENSMPUG00000004312) FAM210A (ENSMPUG00000004324) LDLRAD4 (ENSMPUG00000004333) American mink MODERN SPECIES 186 ESS2 (ENSNVIG00000022393) GSC2 (ENSNVIG00000022406) SLC25A1 (ENSNVIG00000022410) CLTCL1 (ENSNVIG00000022420) HIRA (ENSNVIG00000022490) #10 MRPL40 (ENSNVIG00000022531) #11 C22orf39 (ENSNVIG00000022538) #12 UFD1 (ENSNVIG00000022540) #13 CDC45 (ENSNVIG00000022560) #14 CLDN5 (ENSNVIG00000022587) #15 SEPTIN5 (ENSNVIG00000022591) GP1BB (ENSNVIG00000022601) #17 TBX1 (ENSNVIG00000022605) #18 GNB1L (ENSNVIG00000022615) #19 TXNRD2 (ENSNVIG00000022635) #20 COMT (ENSNVIG00000022688) #23 ARVCF (ENSNVIG00000022696) #24 TANGO2 (ENSNVIG00000022715) #25 DGCR8 (ENSNVIG00000022717) #26 TRMT2A (ENSNVIG00000022735) #28 RANG (ENSNVIG00000022738) ZDHHC8 (ENSNVIG00000022747) #31 CCDC188 (ENSNVIG00000022757) RTN4R (ENSNVIG00000022759) ENSNVIG00000022764 DGCR6 (ENSNVIG00000022780) Ursidae ANCESTRAL SPECIES 23 ENSGT00410000026913 ENSGT00390000009387 ENSGT00550000074856 ENSGT00950000183166.a.b ENSGT00550000074919 #10 ENSGT00390000010239 #11 ENSGT00390000002511 #12 ENSGT00390000002408 #13 ENSGT00390000009662 #14 ENSGT00940000161769 #15 ENSGT00940000159913 ENSGT00530000064244.b #17 ENSGT00940000154816.a.b #18 ENSGT00390000018606 #19 ENSGT00940000158832 #20 ENSGT00940000155317.b #23 ENSGT00940000157027 #24 ENSGT00390000012733 #25 ENSGT00390000015977 #26 ENSGT00530000063723.a #28 ENSGT00900000141073 ENSGT00940000158044.a #31 ENSGT00940000153380.D ENSGT00940000160711 ENSGT00390000006265.b ENSGT00390000017663 ENSGT01030000234510.a.a.b ENSGT01030000234510.a.a.a.a.a.a ENSGT00390000002368 ENSGT00940000156554 ENSGT00390000000724.c.b Ursus ANCESTRAL SPECIES 144 ENSGT00940000163130 ENSGT00940000162226 ENSGT00390000009387 ENSGT00550000074856 ENSGT00950000183166.a.b ENSGT00550000074919 #10 ENSGT00390000010239 #11 ENSGT00390000002511 #12 ENSGT00390000002408 #13 ENSGT00390000009662 #14 ENSGT00940000159913 ENSGT00530000064244.b #17 ENSGT00940000154816.a.b #18 ENSGT00390000018606 #19 ENSGT00940000158832 #20 ENSGT00940000155317.b #23 ENSGT00940000157027 #24 ENSGT00390000012733 #25 ENSGT00390000015977 #26 ENSGT00530000063723.a #28 ENSGT00900000141073 ENSGT00940000158044.a #31 ENSGT00940000153380.D ENSGT00940000160711 ENSGT00390000006265.b ENSGT00390000017663 Polar bear MODERN SPECIES 207 ENSUMAG00000004786 DGCR2 (ENSUMAG00000004788) TSSK1B (ENSUMAG00000004826) TSSK2 (ENSUMAG00000004830) ESS2 (ENSUMAG00000004834) SLC25A1 (ENSUMAG00000004848) CLTCL1 (ENSUMAG00000005060) HIRA (ENSUMAG00000006789) #10 MRPL40 (ENSUMAG00000006804) #11 C22orf39 (ENSUMAG00000006810) #12 UFD1 (ENSUMAG00000006817) #13 CDC45 (ENSUMAG00000006853) #14 ENSUMAG00000006983 GNB1L (ENSUMAG00000006994) #19 TXNRD2 (ENSUMAG00000007004) #20 COMT (ENSUMAG00000007020) #23 ARVCF (ENSUMAG00000007074) #24 TANGO2 (ENSUMAG00000007391) #25 DGCR8 (ENSUMAG00000007398) #26 TRMT2A (ENSUMAG00000007407) #28 RANBP1 (ENSUMAG00000007426) ZDHHC8 (ENSUMAG00000007455) #31 ENSUMAG00000007504 ENSUMAG00000007518 ENSUMAG00000007694 American black bear MODERN SPECIES 270 SEPTIN5 (ENSUAMG00000011220) GP1BB (ENSUAMG00000011218) #17 TBX1 (ENSUAMG00000011214) #18 GNB1L (ENSUAMG00000011210) #19 ENSUAMG00000010940 #20 ENSUAMG00000010906 #20 COMT (ENSUAMG00000010900) #23 ARVCF (ENSUAMG00000010874) #24 TANGO2 (ENSUAMG00000010859) #25 DGCR8 (ENSUAMG00000010847) #26 TRMT2A (ENSUAMG00000010839) #28 RANBP1 (ENSUAMG00000010799) ZDHHC8 (ENSUAMG00000010791) #31 CCDC188 (ENSUAMG00000010789) RTN4R (ENSUAMG00000010787) ENSUAMG00000010784 ENSUAMG00000010782 Giant Panda DUPLICATION Giant Panda MODERN SPECIES 2074 ENSAMEG00000030979 #23 Giant Panda MODERN SPECIES 5 ENSAMEG00000028481 TSSK2 (ENSAMEG00000019541) ENSAMEG00000011246 ESS2 (ENSAMEG00000011256) SLC25A1 (ENSAMEG00000011279) CLTCL1 (ENSAMEG00000011289) MRPL40 (ENSAMEG00000011421) #11 HIRA (ENSAMEG00000011366) #10 UFD1 (ENSAMEG00000011428) #13 CDC45 (ENSAMEG00000011443) #14 CLDN5 (ENSAMEG00000019567) #15 SEPTIN5 (ENSAMEG00000011509) GP1BB (ENSAMEG00000025487) #17 ENSAMEG00000011544 #18 ENSAMEG00000011548 #19 COMT (ENSAMEG00000011617) #23 ARVCF (ENSAMEG00000011628) #24 ENSAMEG00000011701 #25 DGCR8 (ENSAMEG00000011732) #26 TRMT2A (ENSAMEG00000011760) #28 RANBP1 (ENSAMEG00000011790) ZDHHC8 (ENSAMEG00000011800) #31 CCDC188 (ENSAMEG00000025773) ENSAMEG00000011833 ENSAMEG00000000120 ENSAMEG00000018799 ENSAMEG00000029047 ENSAMEG00000002380 ENSAMEG00000031152 ENSAMEG00000029980 ENSAMEG00000019512 Eulipotyphla ANCESTRAL SPECIES 1384 ENSGT00940000155317.b #23 ENSGT00940000157027 #24 Common shrew MODERN SPECIES 7330 COMT (ENSSARG00000014022) #23 ARVCF (ENSSARG00000014034) #24 Hedgehog MODERN SPECIES 15477 COMT (ENSEEUG00000013745) #23 Sauria ANCESTRAL SPECIES 11 ENSGT00940000161453 #8 ENSGT00940000153189.A #9 ENSGT00910000148339 ENSGT00550000074919 #10 ENSGT00390000010239 #11 ENSGT00390000002511 #12 ENSGT00390000002408 #13 ENSGT00390000009662 #14 ENSGT00940000161769 #15 ENSGT00940000164668 #16 ENSGT00940000159913 ENSGT00530000064244.b #17 ENSGT00940000154816.a.b #18 ENSGT00390000018606 #19 ENSGT00940000158832 #20 ENSGT00940000155317.b #23 ENSGT00940000157027 #24 ENSGT00390000012733 #25 ENSGT00390000015977 #26 ENSGT00970000193655 ENSGT00530000063723.a #28 ENSGT00900000141073 ENSGT00940000158044.a #31 ENSGT00390000004796 ENSGT00390000016767 #32 ENSGT00950000183078.b.b #33 ENSGT00400000022306 #34 ENSGT00940000160709 #35 ENSGT00940000156599 #37 ENSGT00390000016776 ENSGT00940000154764 Archelosauria ANCESTRAL SPECIES 14 ENSGT00940000161453 #8 ENSGT00940000153189.A #9 ENSGT00910000148339 ENSGT00550000074919 #10 ENSGT00390000010239 #11 ENSGT00390000002511 #12 ENSGT00390000002408 #13 ENSGT00390000009662 #14 ENSGT00940000161769 #15 ENSGT00940000164668 #16 ENSGT00940000159913 ENSGT00530000064244.b #17 ENSGT00940000154816.a.b #18 ENSGT00390000018606 #19 ENSGT00940000158832 #20 ENSGT00940000155317.b #23 ENSGT00940000157027 #24 ENSGT00390000012733 #25 ENSGT00390000015977 #26 ENSGT00970000193655 ENSGT00530000063723.a #28 ENSGT00900000141073 ENSGT00940000158044.a #31 ENSGT00390000004796 ENSGT00390000016767 #32 ENSGT00950000183078.b.b #33 ENSGT00400000022306 #34 ENSGT00940000160709 #35 ENSGT00940000156599 #37 ENSGT00390000016776 ENSGT00940000154764 Archosauria ANCESTRAL SPECIES 19 ENSGT00940000161453 #8 ENSGT00940000153189.A #9 ENSGT00910000148339 ENSGT00550000074919 #10 ENSGT00390000010239 #11 ENSGT00390000002511 #12 ENSGT00390000002408 #13 ENSGT00390000009662 #14 ENSGT00940000161769 #15 ENSGT00940000164668 #16 ENSGT00940000159913 ENSGT00530000064244.b #17 ENSGT00940000154816.a.b #18 ENSGT00390000018606 #19 ENSGT00940000158832 #20 ENSGT00940000155317.b #23 ENSGT00940000157027 #24 ENSGT00390000012733 #25 ENSGT00390000015977 #26 ENSGT00970000193655 ENSGT00530000063723.a #28 ENSGT00900000141073 ENSGT00940000158044.a #31 ENSGT00390000004796 ENSGT00390000016767 #32 ENSGT00950000183078.b.b #33 ENSGT00400000022306 #34 ENSGT00940000160709 #35 ENSGT00940000156599 #37 ENSGT00390000016776 ENSGT00940000154764 Aves ANCESTRAL SPECIES 19 ENSGT00940000161453 #8 ENSGT00940000153189.A #9 ENSGT00910000148339 ENSGT00550000074919 #10 ENSGT00390000010239 #11 ENSGT00390000002511 #12 ENSGT00390000002408 #13 ENSGT00390000009662 #14 ENSGT00940000161769 #15 ENSGT00940000164668 #16 ENSGT00940000159913 ENSGT00530000064244.b #17 ENSGT00940000154816.a.b #18 ENSGT00390000018606 #19 ENSGT00940000158832 #20 ENSGT00940000155317.b #23 ENSGT00940000157027 #24 ENSGT00390000012733 #25 ENSGT00390000015977 #26 ENSGT00970000193655 ENSGT00530000063723.a #28 ENSGT00900000141073 ENSGT00940000158044.a #31 ENSGT00390000004796 ENSGT00390000016767 #32 ENSGT00950000183078.b.b #33 ENSGT00400000022306 #34 ENSGT00940000160709 #35 ENSGT00940000156599 #37 ENSGT00390000016776 ENSGT00940000154764 Neognathae ANCESTRAL SPECIES 15 ENSGT00940000161453 #8 ENSGT00940000153189.A #9 ENSGT00910000148339 ENSGT00550000074919 #10 ENSGT00390000010239 #11 ENSGT00390000002511 #12 ENSGT00390000002408 #13 ENSGT00390000009662 #14 ENSGT00940000161769 #15 ENSGT00940000164668 #16 ENSGT00940000159913 ENSGT00530000064244.b #17 ENSGT00940000154816.a.b #18 ENSGT00390000018606 #19 ENSGT00940000158832 #20 ENSGT00940000155317.b #23 ENSGT00940000157027 #24 ENSGT00390000012733 #25 ENSGT00390000015977 #26 ENSGT00970000193655 ENSGT00530000063723.a #28 ENSGT00900000141073 ENSGT00940000158044.a #31 ENSGT00390000004796 ENSGT00390000016767 #32 ENSGT00950000183078.b.b #33 ENSGT00400000022306 #34 ENSGT00940000160709 #35 ENSGT00940000156599 #37 ENSGT00390000016776 ENSGT00940000154764.p Galloanserae ANCESTRAL SPECIES 13 ENSGT00940000161453 #8 ENSGT00940000153189.A #9 ENSGT00910000148339 ENSGT00550000074919 #10 ENSGT00390000010239 #11 ENSGT00390000002511 #12 ENSGT00390000002408 #13 ENSGT00390000009662 #14 ENSGT00940000161769 #15 ENSGT00940000164668 #16 ENSGT00940000159913 ENSGT00530000064244.b #17 ENSGT00940000154816.a.b #18 ENSGT00390000018606 #19 ENSGT00940000158832 #20 ENSGT00940000155317.b #23 ENSGT00940000157027 #24 ENSGT00390000012733 #25 ENSGT00390000015977 #26 ENSGT00970000193655 ENSGT00530000063723.a #28 ENSGT00900000141073 ENSGT00940000158044.a #31 ENSGT00390000004796 ENSGT00390000016767 #32 ENSGT00950000183078.b.b #33 ENSGT00400000022306 #34 ENSGT00940000160709 #35 ENSGT00940000156599 #37 ENSGT00390000016776 ENSGT00940000154764.p Anatidae ANCESTRAL SPECIES 25 ENSGT00940000161453 #8 ENSGT00940000153189.A #9 ENSGT00910000148339 ENSGT00550000074919 #10 ENSGT00390000010239 #11 ENSGT00390000002511 #12 ENSGT00390000002408 #13 ENSGT00390000009662 #14 ENSGT00940000161769 #15 ENSGT00940000164668 #16 ENSGT00940000159913 ENSGT00530000064244.b #17 ENSGT00940000154816.a.b #18 ENSGT00390000018606 #19 ENSGT00940000158832 #20 ENSGT00940000155317.b #23 ENSGT00940000157027 #24 ENSGT00390000012733 #25 ENSGT00390000015977 #26 ENSGT00970000193655 ENSGT00530000063723.a #28 ENSGT00900000141073 ENSGT00940000158044.a #31 ENSGT00390000004796 ENSGT00390000016767 #32 ENSGT00950000183078.b.b #33 ENSGT00400000022306 #34 ENSGT00940000160709 #35 ENSGT00940000156599 #37 ENSGT00390000016776 ENSGT00940000154764.o.a Pink-footed goose MODERN SPECIES 60 MAPK1 (ENSABRG00000014553) #7 YPEL1 (ENSABRG00000014559) #8 PPIL2 (ENSABRG00000014570) #9 HIRA (ENSABRG00000014830) #10 MRPL40 (ENSABRG00000014886) #11 C22orf39 (ENSABRG00000014887) #12 UFD1 (ENSABRG00000014919) #13 CDC45 (ENSABRG00000015254) #14 CLDN5 (ENSABRG00000015291) #15 ENSABRG00000015294 #16 SEPTIN5 (ENSABRG00000015305) GP1BB (ENSABRG00000015314) #17 TBX1 (ENSABRG00000015316) #18 GNB1L (ENSABRG00000015322) #19 TXNRD2 (ENSABRG00000015330) #20 COMT (ENSABRG00000015450) #23 ARVCF (ENSABRG00000015471) #24 TANGO2 (ENSABRG00000015481) #25 DGCR8 (ENSABRG00000015489) #26 TRMT2A (ENSABRG00000015699) #28 RANBP1 (ENSABRG00000015749) ZDHHC8 (ENSABRG00000015760) #31 PGAM5 (ENSABRG00000015763) ANKLE2 (ENSABRG00000015773) #32 GOLGA3 (ENSABRG00000016040) #33 CHFR (ENSABRG00000016290) #34 FBRSL1 (ENSABRG00000016430) #35 GALNT9 (ENSABRG00000016507) #37 NOC4L (ENSABRG00000016524) ENSABRG00000016629 ENSABRG00000017120 Duck MODERN SPECIES 7 MAPK1 (ENSAPLG00000006116) #7 YPEL1 (ENSAPLG00000026762) #8 PPIL2 (ENSAPLG00000005026) #9 ENSAPLG00000024984 HIRA (ENSAPLG00000004150) #10 MRPL40 (ENSAPLG00000004002) #11 C22orf39 (ENSAPLG00000000942) #12 UFD1 (ENSAPLG00000003494) #13 CLDN5 (ENSAPLG00000024722) #15 CDC45 (ENSAPLG00000016068) #14 SEPTIN5 (ENSAPLG00000016224) GP1BB (ENSAPLG00000002296) #17 TBX1 (ENSAPLG00000023700) #18 GNB1L (ENSAPLG00000002318) #19 TXNRD2 (ENSAPLG00000002411) #20 COMT (ENSAPLG00000002789) #23 ARVCF (ENSAPLG00000002841) #24 TANGO2 (ENSAPLG00000003711) #25 DGCR8 (ENSAPLG00000004281) #26 ENSAPLG00000025595 TRMT2A (ENSAPLG00000004108) #28 RANBP1 (ENSAPLG00000003954) ZDHHC8 (ENSAPLG00000003758) #31 PGAM5 (ENSAPLG00000003722) ANKLE2 (ENSAPLG00000003408) #32 GOLGA3 (ENSAPLG00000003277) #33 CHFR (ENSAPLG00000002931) #34 FBRSL1 (ENSAPLG00000002858) #35 ENSAPLG00000030590 #37 ENSAPLG00000002528 #37 NOC4L (ENSAPLG00000001340) Phasianidae ANCESTRAL SPECIES 13 ENSGT00940000156771 #7 ENSGT00940000161453 #8 ENSGT00940000153189.A #9 ENSGT00550000074919 #10 ENSGT00390000010239 #11 ENSGT00390000002511 #12 ENSGT00390000002408 #13 ENSGT00390000009662 #14 ENSGT00940000161769 #15 ENSGT00940000164668 #16 ENSGT00940000159913 ENSGT00530000064244.b #17 ENSGT00940000154816.a.b #18 ENSGT00390000018606 #19 ENSGT00940000158832 #20 ENSGT00940000155317.b #23 ENSGT00940000157027 #24 ENSGT00390000012733 #25 ENSGT00390000015977 #26 ENSGT00530000063723.a #28 ENSGT00970000193655 ENSGT00900000141073 ENSGT00940000158044.a #31 ENSGT00390000004796 ENSGT00390000016767 #32 ENSGT00950000183078.b.b #33 ENSGT00400000022306 #34 ENSGT00940000160709 #35 ENSGT00940000156599 #37 ENSGT00390000016776 ENSGT00940000154764.p Phasianidae_b ANCESTRAL SPECIES 13 ENSGT00940000156771 #7 ENSGT00940000161453 #8 ENSGT00940000153189.A #9 ENSGT00550000074919 #10 ENSGT00390000010239 #11 ENSGT00390000002511 #12 ENSGT00390000002408 #13 ENSGT00390000009662 #14 ENSGT00940000161769 #15 ENSGT00940000164668 #16 ENSGT00940000159913 ENSGT00530000064244.b #17 ENSGT00940000154816.a.b #18 ENSGT00390000018606 #19 ENSGT00940000158832 #20 ENSGT00940000155317.b #23 ENSGT00940000157027 #24 ENSGT00390000012733 #25 ENSGT00390000015977 #26 ENSGT00530000063723.a #28 ENSGT00900000141073 ENSGT00940000158044.a #31 ENSGT00390000004796 ENSGT00390000016767 #32 ENSGT00950000183078.b.b #33 ENSGT00400000022306 #34 ENSGT00940000160709 #35 ENSGT00940000156599 #37 ENSGT00390000016776 ENSGT00940000154764.p ENSGT00950000183160.B Chicken MODERN SPECIES 6 MAPK3 (ENSGALG00010024358) #7 YPEL1 (ENSGALG00010024371) #8 PPIL2 (ENSGALG00010024387) #9 HIRA (ENSGALG00010024407) #10 MRPL40 (ENSGALG00010024425) #11 C22orf39 (ENSGALG00010024427) #12 UFD1L (ENSGALG00010024439) #13 CDC45 (ENSGALG00010024480) #14 CLDN5 (ENSGALG00010024495) #15 SEPTIN2L (ENSGALG00010027003) #16 SEPTIN5 (ENSGALG00010024509) GP1BB (ENSGALG00010024525) #17 TBX1 (ENSGALG00010024528) #18 GNB1L (ENSGALG00010024549) #19 TXNRD2 (ENSGALG00010024575) #20 COMT (ENSGALG00010024592) #23 ARVCF (ENSGALG00010024616) #24 TANGO2 (ENSGALG00010024628) #25 DGCR8 (ENSGALG00010020797) #26 TRMT2A (ENSGALG00010020816) #28 RANBP1 (ENSGALG00010020833) ZDHHC8 (ENSGALG00010021057) #31 ENSGALG00010021063 PGAM5 (ENSGALG00010021069) ANKLE2 (ENSGALG00010021088) #32 GOLGA3 (ENSGALG00010021102) #33 CHFR (ENSGALG00010021134) #34 FBRSL1 (ENSGALG00010022226) #35 GALNT9 (ENSGALG00010022247) #37 NOC4L (ENSGALG00010022255) EP400 (ENSGALG00010022279) Turkey MODERN SPECIES 8 ENSMGAG00000000978 SDF2L1 (ENSMGAG00000020731) TOP3B (ENSMGAG00000001002) PPM1F (ENSMGAG00000001043) MAPK1 (ENSMGAG00000001061) #7 YPEL1 (ENSMGAG00000001080) #8 PPIL2 (ENSMGAG00000001085) #9 HIRA (ENSMGAG00000001135) #10 MRPL40 (ENSMGAG00000001177) #11 UFD1 (ENSMGAG00000001181) #13 CDC45 (ENSMGAG00000001215) #14 SEPTIN5 (ENSMGAG00000001319) GP1BB (ENSMGAG00000015641) #17 GNB1L (ENSMGAG00000001372) #19 TXNRD2 (ENSMGAG00000001394) #20 COMT (ENSMGAG00000001429) #23 ARVCF (ENSMGAG00000001435) #24 ENSMGAG00000020861 TANGO2 (ENSMGAG00000001479) #25 DGCR8 (ENSMGAG00000001534) #26 TRMT2A (ENSMGAG00000001517) #28 RANBP1 (ENSMGAG00000001552) ZDHHC8 (ENSMGAG00000001565) #31 PGAM5 (ENSMGAG00000001648) ANKLE2 (ENSMGAG00000017380) #32 GOLGA3 (ENSMGAG00000001708) #33 CHFR (ENSMGAG00000001732) #34 FBRSL1 (ENSMGAG00000001787) #35 ENSMGAG00000018924 ENSMGAG00000001847 #37 ENSMGAG00000022753 #37 Japanese quail MODERN SPECIES 6 PPM1F (ENSCJPG00005019018) MAPK1 (ENSCJPG00005019019) #7 YPEL1 (ENSCJPG00005019020) #8 PPIL2 (ENSCJPG00005019021) #9 HIRA (ENSCJPG00005019052) #10 MRPL40 (ENSCJPG00005019053) #11 UFD1 (ENSCJPG00005019054) #13 CDC45 (ENSCJPG00005019055) #14 CLDN5 (ENSCJPG00005019056) #15 ENSCJPG00005019057 #16 SEPTIN5 (ENSCJPG00005019059) GP1BB (ENSCJPG00005019060) #17 TBX1 (ENSCJPG00005019062) #18 GNB1L (ENSCJPG00005019063) #19 TXNRD2 (ENSCJPG00005019064) #20 COMT (ENSCJPG00005019104) #23 ARVCF (ENSCJPG00005019105) #24 TANGO2 (ENSCJPG00005019153) #25 DGCR8 (ENSCJPG00005019155) #26 TRMT2A (ENSCJPG00005019158) #28 ENSCJPG00005019159 RANBP1 (ENSCJPG00005019160) ZDHHC8 (ENSCJPG00005019162) #31 PGAM5 (ENSCJPG00005019163) ANKLE2 (ENSCJPG00005019164) #32 GOLGA3 (ENSCJPG00005019165) #33 CHFR (ENSCJPG00005019219) #34 FBRSL1 (ENSCJPG00005019229) #35 GALNT9 (ENSCJPG00005019234) #37 NOC4L (ENSCJPG00005019236) EP400 (ENSCJPG00005019237) Neognathae_b ANCESTRAL SPECIES 27 ENSGT00940000156771 #7 ENSGT00940000161453 #8 ENSGT00940000153189.A #9 ENSGT00550000074919 #10 ENSGT00390000010239 #11 ENSGT00390000002511 #12 ENSGT00390000002408 #13 ENSGT00390000009662 #14 ENSGT00940000161769 #15 ENSGT00940000164668 #16 ENSGT00940000159913 ENSGT00530000064244.b #17 ENSGT00940000154816.a.b #18 ENSGT00390000018606 #19 ENSGT00940000158832 #20 ENSGT00940000155317.b #23 ENSGT00940000157027 #24 ENSGT00390000012733 #25 ENSGT00390000015977 #26 ENSGT00970000193655 ENSGT00530000063723.a #28 ENSGT00900000141073 ENSGT00940000158044.a #31 ENSGT00390000004796 ENSGT00390000016767 #32 ENSGT00950000183078.b.b #33 ENSGT00400000022306 #34 ENSGT00940000160709 #35 ENSGT00940000156599 #37 ENSGT00390000016776 ENSGT00940000154764.p Neognathae_c ANCESTRAL SPECIES 16 ENSGT00940000156771 #7 ENSGT00940000161453 #8 ENSGT00940000153189.A #9 ENSGT00550000074919 #10 ENSGT00390000010239 #11 ENSGT00390000002511 #12 ENSGT00390000002408 #13 ENSGT00390000009662 #14 ENSGT00940000161769 #15 ENSGT00940000164668 #16 ENSGT00940000159913 ENSGT00530000064244.b #17 ENSGT00940000154816.a.b #18 ENSGT00390000018606 #19 ENSGT00940000158832 #20 ENSGT00940000155317.b #23 ENSGT00940000157027 #24 ENSGT00390000012733 #25 ENSGT00390000015977 #26 ENSGT01100000263932 ENSGT00530000063723.a #28 ENSGT00900000141073 ENSGT00940000158044.a #31 ENSGT00390000004796 ENSGT00390000016767 #32 ENSGT00950000183078.b.b #33 ENSGT00400000022306 #34 ENSGT00940000160709 #35 ENSGT00940000156599 #37 ENSGT00390000016776 ENSGT00940000154764.p Golden eagle MODERN SPECIES 25 MAPK1 (ENSACCG00020003738) #7 YPEL1 (ENSACCG00020003724) #8 PPIL2 (ENSACCG00020003705) #9 HIRA (ENSACCG00020003675) #10 MRPL40 (ENSACCG00020003653) #11 C22orf39 (ENSACCG00020003645) #12 UFD1 (ENSACCG00020003625) #13 CDC45 (ENSACCG00020003595) #14 CLDN5 (ENSACCG00020003572) #15 ENSACCG00020003549 #16 SEPTIN5 (ENSACCG00020003519) GP1BB (ENSACCG00020003504) #17 TBX1 (ENSACCG00020003493) #18 GNB1L (ENSACCG00020003467) #19 TXNRD2 (ENSACCG00020003433) #20 COMT (ENSACCG00020003409) #23 ENSACCG00020003363 #24 ENSACCG00020003318 #24 TANGO2 (ENSACCG00020003304) #25 DGCR8 (ENSACCG00020003266) #26 ENSACCG00020003249 TRMT2A (ENSACCG00020003237) #28 RANBP1 (ENSACCG00020003222) ZDHHC8 (ENSACCG00020003211) #31 PGAM5 (ENSACCG00020003198) ANKLE2 (ENSACCG00020003179) #32 GOLGA3 (ENSACCG00020002969) #33 CHFR (ENSACCG00020002595) #34 FBRSL1 (ENSACCG00020002551) #35 GALNT9 (ENSACCG00020002501) #37 NOC4L (ENSACCG00020002489) Kakapo MODERN SPECIES 3 MAPK1 (ENSSHBG00005009151) #7 YPEL1 (ENSSHBG00005000957) #8 PPIL2 (ENSSHBG00005018275) #9 HIRA (ENSSHBG00005018270) #10 MRPL40 (ENSSHBG00005018265) #11 C22orf39 (ENSSHBG00005018264) #12 UFD1 (ENSSHBG00005018257) #13 CDC45 (ENSSHBG00005018247) #14 CLDN5 (ENSSHBG00005018240) #15 ENSSHBG00005018237 #16 SEPTIN5 (ENSSHBG00005018234) GP1BB (ENSSHBG00005018232) #17 TBX1 (ENSSHBG00005018229) #18 GNB1L (ENSSHBG00005018226) #19 TXNRD2 (ENSSHBG00005018221) #20 COMT (ENSSHBG00005018218) #23 ARVCF (ENSSHBG00005018194) #24 TANGO2 (ENSSHBG00005018182) #25 DGCR8 (ENSSHBG00005018175) #26 TRMT2A (ENSSHBG00005018166) #28 RANBP1 (ENSSHBG00005018157) ZDHHC8 (ENSSHBG00005018153) #31 PGAM5 (ENSSHBG00005018149) ANKLE2 (ENSSHBG00005018143) #32 GOLGA3 (ENSSHBG00005017108) #33 CHFR (ENSSHBG00005017001) #34 FBRSL1 (ENSSHBG00005016988) #35 GALNT9 (ENSSHBG00005016981) #37 NOC4L (ENSSHBG00005016966) EP400 (ENSSHBG00005016680) PUS1 (ENSSHBG00005016558) Passeriformes ANCESTRAL SPECIES 15 ENSGT00940000156771 #7 ENSGT00940000161453 #8 ENSGT00940000153189.A #9 ENSGT00550000074919 #10 ENSGT00390000010239 #11 ENSGT00390000002511 #12 ENSGT00390000002408 #13 ENSGT00390000009662 #14 ENSGT00940000161769 #15 ENSGT00940000164668 #16 ENSGT00940000159913 ENSGT00530000064244.b #17 ENSGT00940000154816.a.b #18 ENSGT00390000018606 #19 ENSGT00940000158832 #20 ENSGT00940000155317.b #23 ENSGT00940000157027 #24 ENSGT00390000012733 #25 ENSGT00390000015977 #26 ENSGT00970000193655 ENSGT00530000063723.a #28 ENSGT00900000141073 ENSGT00940000158044.a #31 ENSGT00390000004796 ENSGT00390000016767 #32 ENSGT00950000183078.b.b #33 ENSGT00400000022306 #34 ENSGT00940000160709 #35 ENSGT00940000156599 #37 ENSGT00390000016776 ENSGT00940000154764.p Passeriformes_d ANCESTRAL SPECIES 14 ENSGT00940000156771 #7 ENSGT00940000161453 #8 ENSGT00940000153189.A #9 ENSGT00550000074919 #10 ENSGT00390000010239 #11 ENSGT00390000002511 #12 ENSGT00390000002408 #13 ENSGT00390000009662 #14 ENSGT00940000161769 #15 ENSGT00940000164668 #16 ENSGT00940000159913 ENSGT00530000064244.b #17 ENSGT00940000154816.a.b #18 ENSGT00390000018606 #19 ENSGT00940000158832 #20 ENSGT00940000155317.b #23 ENSGT00940000157027 #24 ENSGT00390000012733 #25 ENSGT00390000015977 #26 ENSGT00530000063723.a #28 ENSGT00970000193655 ENSGT00900000141073 ENSGT00940000158044.a #31 ENSGT00390000004796.v ENSGT00390000004796.u ENSGT00390000016767 #32 ENSGT00950000183078.b.b #33 ENSGT00400000022306 #34 ENSGT00940000160709 #35 ENSGT00940000156599 #37 ENSGT00390000016776 Flycatcher MODERN SPECIES 6 TOP3B (ENSFALG00000007908) PPM1F (ENSFALG00000007926) MAPK1 (ENSFALG00000007935) #7 YPEL1 (ENSFALG00000028339) PPIL2 (ENSFALG00000007955) #9 HIRA (ENSFALG00000007974) #10 MRPL40 (ENSFALG00000023636) #11 UFD1 (ENSFALG00000007990) #13 CDC45 (ENSFALG00000007995) #14 CLDN5 (ENSFALG00000014507) #15 SEPTIN5 (ENSFALG00000008028) GP1BB (ENSFALG00000014523) #17 TBX1 (ENSFALG00000027012) #18 GNB1L (ENSFALG00000008056) #19 TXNRD2 (ENSFALG00000008065) #20 COMT (ENSFALG00000008069) #23 ARVCF (ENSFALG00000008093) #24 TANGO2 (ENSFALG00000027944) #25 TRMT2A (ENSFALG00000008162) #28 DGCR8 (ENSFALG00000008149) #26 ENSFALG00000008187 #31 ENSFALG00000027639 ENSFALG00000026312 ANKLE2 (ENSFALG00000008217) #32 GOLGA3 (ENSFALG00000008223) #33 CHFR (ENSFALG00000008235) #34 FBRSL1 (ENSFALG00000008244) #35 GALNT9 (ENSFALG00000025740) #37 NOC4L (ENSFALG00000008259) EP400 (ENSFALG00000008264) PUS1 (ENSFALG00000008273) Passeriformes_g ANCESTRAL SPECIES 14 ENSGT00940000156771 #7 ENSGT00940000161453 #8 ENSGT00940000153189.A #9 ENSGT00550000074919 #10 ENSGT00390000010239 #11 ENSGT00390000002511 #12 ENSGT00390000002408 #13 ENSGT00390000009662 #14 ENSGT00940000161769 #15 ENSGT00940000164668 #16 ENSGT00940000159913 ENSGT00530000064244.b #17 ENSGT00940000154816.a.b #18 ENSGT00390000018606 #19 ENSGT00940000158832 #20 ENSGT00940000155317.b #23 ENSGT00940000157027 #24 ENSGT00390000012733 #25 ENSGT00390000015977 #26 ENSGT00530000063723.a #28 ENSGT00970000193655 ENSGT00900000141073 ENSGT00940000158044.a #31 ENSGT00390000004796.u ENSGT00390000016767 #32 ENSGT00950000183078.b.b #33 ENSGT00400000022306 #34 ENSGT00940000160709 #35 ENSGT00940000156599 #37 ENSGT00390000016776 ENSGT00940000154764.p Passeroidea ANCESTRAL SPECIES 14 ENSGT00940000156771 #7 ENSGT00940000161453 #8 ENSGT00940000153189.A #9 ENSGT00550000074919 #10 ENSGT00390000010239 #11 ENSGT00390000002511 #12 ENSGT00390000002408 #13 ENSGT00390000009662 #14 ENSGT00940000161769 #15 ENSGT00940000164668 #16 ENSGT00940000159913 ENSGT00530000064244.b #17 ENSGT00940000154816.a.b #18 ENSGT00390000018606 #19 ENSGT00940000158832 #20 ENSGT00940000155317.b #23 ENSGT00940000157027 #24 ENSGT00390000012733 #25 ENSGT00390000015977 #26 ENSGT00530000063723.a #28 ENSGT00970000193655 ENSGT00900000141073 ENSGT00940000158044.a #31 ENSGT00390000004796.u ENSGT00390000016767 #32 ENSGT00950000183078.b.b #33 ENSGT00400000022306 #34 ENSGT00940000160709 #35 ENSGT00940000156599 #37 ENSGT00390000016776 ENSGT00940000154764.p Common canary MODERN SPECIES 18 PPM1F (ENSSCAG00000004660) MAPK1 (ENSSCAG00000004664) #7 YPEL1 (ENSSCAG00000004670) #8 PPIL2 (ENSSCAG00000004674) #9 HIRA (ENSSCAG00000004679) #10 MRPL40 (ENSSCAG00000004687) #11 ENSSCAG00000004688 #12 UFD1 (ENSSCAG00000004690) #13 CDC45 (ENSSCAG00000004694) #14 ENSSCAG00000004699 #16 SEPTIN5 (ENSSCAG00000004702) GP1BB (ENSSCAG00000004704) #17 TBX1 (ENSSCAG00000004709) #18 GNB1L (ENSSCAG00000004716) #19 TXNRD2 (ENSSCAG00000004728) #20 COMT (ENSSCAG00000004738) #23 ARVCF (ENSSCAG00000004744) #24 TANGO2 (ENSSCAG00000004750) #25 DGCR8 (ENSSCAG00000004756) #26 TRMT2A (ENSSCAG00000004763) #28 ENSSCAG00000004768 RANBP1 (ENSSCAG00000004771) ZDHHC8 (ENSSCAG00000004783) #31 PGAM5 (ENSSCAG00000004789) ANKLE2 (ENSSCAG00000004790) #32 GOLGA3 (ENSSCAG00000004796) #33 CHFR (ENSSCAG00000004818) #34 FBRSL1 (ENSSCAG00000004832) #35 ENSSCAG00000004866 #37 ENSSCAG00000004869 #37 NOC4L (ENSSCAG00000004877) Zebra finch MODERN SPECIES 6 MAPK1 (ENSTGUG00000008602) #7 YPEL1 (ENSTGUG00000023955) #8 PPIL2 (ENSTGUG00000008567) #9 HIRA (ENSTGUG00000008538) #10 MRPL40 (ENSTGUG00000008534) #11 C22orf39 (ENSTGUG00000008531) #12 UFD1 (ENSTGUG00000008505) #13 CDC45 (ENSTGUG00000008459) #14 CLDN5 (ENSTGUG00000024890) #15 ENSTGUG00000008445 #16 SEPTIN5 (ENSTGUG00000008412) GP1BB (ENSTGUG00000028476) #17 TBX1 (ENSTGUG00000008395) #18 GNB1L (ENSTGUG00000029275) #19 TXNRD2 (ENSTGUG00000008350) #20 COMT (ENSTGUG00000021688) #23 ARVCF (ENSTGUG00000008310) #24 TANGO2 (ENSTGUG00000023918) #25 DGCR8 (ENSTGUG00000026902) #26 TRMT2A (ENSTGUG00000025321) #28 RANBP1 (ENSTGUG00000008294) ZDHHC8 (ENSTGUG00000008274) #31 PGAM5 (ENSTGUG00000008267) ANKLE2 (ENSTGUG00000008251) #32 GOLGA3 (ENSTGUG00000008219) #33 CHFR (ENSTGUG00000008181) #34 FBRSL1 (ENSTGUG00000008161) #35 GALNT9 (ENSTGUG00000008131) #37 NOC4L (ENSTGUG00000008115) EP400 (ENSTGUG00000008078) PUS1 (ENSTGUG00000008068) Medium ground finch MODERN SPECIES 33 TOP3B (ENSGFOG00000000246) PPM1F (ENSGFOG00000000237) MAPK1 (ENSGFOG00000000227) #7 YPEL1 (ENSGFOG00000000215) #8 PPIL2 (ENSGFOG00000000205) #9 HIRA (ENSGFOG00000000185) #10 MRPL40 (ENSGFOG00000000175) #11 UFD1 (ENSGFOG00000000172) #13 CDC45 (ENSGFOG00000000163) #14 ENSGFOG00000000148 #16 SEPTIN5 (ENSGFOG00000000119) GP1BB (ENSGFOG00000000108) #17 TBX1 (ENSGFOG00000000104) #18 GNB1L (ENSGFOG00000000097) #19 TXNRD2 (ENSGFOG00000008851) #20 COMT (ENSGFOG00000008830) #23 ARVCF (ENSGFOG00000008748) #24 TANGO2 (ENSGFOG00000008719) #25 DGCR8 (ENSGFOG00000008706) #26 TRMT2A (ENSGFOG00000008593) #28 RANBP1 (ENSGFOG00000008539) ZDHHC8 (ENSGFOG00000008532) #31 PGAM5 (ENSGFOG00000008526) ANKLE2 (ENSGFOG00000008520) #32 GOLGA3 (ENSGFOG00000008501) #33 CHFR (ENSGFOG00000008484) #34 FBRSL1 (ENSGFOG00000008443) #35 ENSGFOG00000008434 GALNT9 (ENSGFOG00000008431) #37 NOC4L (ENSGFOG00000008419) EP400 (ENSGFOG00000008297) Great tit MODERN SPECIES 6 MAPK1 (ENSPMJG00000014268) #7 YPEL1 (ENSPMJG00000014267) #8 PPIL2 (ENSPMJG00000014263) #9 HIRA (ENSPMJG00000014257) #10 MRPL40 (ENSPMJG00000014255) #11 UFD1 (ENSPMJG00000014253) #13 CDC45 (ENSPMJG00000014244) #14 CLDN5 (ENSPMJG00000014243) #15 ENSPMJG00000014238 #16 SEPTIN5 (ENSPMJG00000014235) ENSPMJG00000014233 #17 ENSPMJG00000014230 TBX1 (ENSPMJG00000014229) #18 GNB1L (ENSPMJG00000014228) #19 TXNRD2 (ENSPMJG00000014227) #20 COMT (ENSPMJG00000014222) #23 ENSPMJG00000014220 #24 ENSPMJG00000014218 #24 TANGO2 (ENSPMJG00000014215) #25 DGCR8 (ENSPMJG00000014211) #26 ENSPMJG00000014210 TRMT2A (ENSPMJG00000014209) #28 RANBP1 (ENSPMJG00000014206) ZDHHC8 (ENSPMJG00000014205) #31 PGAM5 (ENSPMJG00000014203) ANKLE2 (ENSPMJG00000014202) #32 GOLGA3 (ENSPMJG00000014194) #33 CHFR (ENSPMJG00000014183) #34 FBRSL1 (ENSPMJG00000014166) #35 GALNT9 (ENSPMJG00000014158) #37 NOC4L (ENSPMJG00000014152) African ostrich MODERN SPECIES 320 SDF2L1 (ENSSCUG00000004103) TOP3B (ENSSCUG00000004099) PPM1F (ENSSCUG00000004098) MAPK1 (ENSSCUG00000004097) #7 YPEL1 (ENSSCUG00000004095) #8 PPIL2 (ENSSCUG00000004090) #9 HIRA (ENSSCUG00000004088) #10 MRPL40 (ENSSCUG00000004087) #11 UFD1 (ENSSCUG00000004085) #13 CDC45 (ENSSCUG00000004060) #14 ENSSCUG00000004046 #16 SEPTIN5 (ENSSCUG00000004041) GP1BB (ENSSCUG00000004040) #17 GNB1L (ENSSCUG00000004038) #19 TXNRD2 (ENSSCUG00000004035) #20 COMT (ENSSCUG00000004034) #23 ARVCF (ENSSCUG00000004030) #24 TANGO2 (ENSSCUG00000004026) #25 DGCR8 (ENSSCUG00000004019) #26 ENSSCUG00000004016 TRMT2A (ENSSCUG00000004014) #28 RANBP1 (ENSSCUG00000004011) ZDHHC8 (ENSSCUG00000004009) #31 PGAM5 (ENSSCUG00000004008) ANKLE2 (ENSSCUG00000004006) #32 GOLGA3 (ENSSCUG00000004003) #33 CHFR (ENSSCUG00000003992) #34 FBRSL1 (ENSSCUG00000003984) #35 ENSSCUG00000003980 GALNT9 (ENSSCUG00000003973) #37 NOC4L (ENSSCUG00000003962) Australian saltwater crocodile MODERN SPECIES 40 MAPK1 (ENSCPRG00005000650) #7 YPEL1 (ENSCPRG00005000641) #8 PPIL2 (ENSCPRG00005000615) #9 ENSCPRG00005000602 HIRA (ENSCPRG00005000588) #10 MRPL40 (ENSCPRG00005000587) #11 C22orf39 (ENSCPRG00005000586) #12 UFD1 (ENSCPRG00005000580) #13 CDC45 (ENSCPRG00005000539) #14 CLDN5 (ENSCPRG00005000525) #15 ENSCPRG00005000519 #16 SEPTIN5 (ENSCPRG00005000510) GP1BB (ENSCPRG00005000503) #17 GNB1L (ENSCPRG00005000488) #19 TXNRD2 (ENSCPRG00005000462) #20 COMT (ENSCPRG00005000450) #23 ENSCPRG00005000448 #24 ENSCPRG00005000397 #24 TANGO2 (ENSCPRG00005000345) #25 DGCR8 (ENSCPRG00005000282) #26 ENSCPRG00005000276 TRMT2A (ENSCPRG00005000266) #28 RANBP1 (ENSCPRG00005000258) ZDHHC8 (ENSCPRG00005000255) #31 PGAM5 (ENSCPRG00005000236) ANKLE2 (ENSCPRG00005000159) #32 GOLGA3 (ENSCPRG00005000134) #33 CHFR (ENSCPRG00005000099) #34 FBRSL1 (ENSCPRG00005000062) #35 GALNT9 (ENSCPRG00005018874) #37 NOC4L (ENSCPRG00005018867) Cryptodira ANCESTRAL SPECIES 28 ENSGT00940000156771 #7 ENSGT00940000161453 #8 ENSGT00940000153189.A #9 ENSGT00550000074919 #10 ENSGT00390000010239 #11 ENSGT00390000002511 #12 ENSGT00390000002408 #13 ENSGT00390000009662 #14 ENSGT00940000161769 #15 ENSGT00940000164668 #16 ENSGT00940000159913 ENSGT00530000064244.b #17 ENSGT00940000154816.a.b #18 ENSGT00390000018606 #19 ENSGT00940000158832 #20 ENSGT00940000155317.b #23 ENSGT00940000157027 #24 ENSGT00390000012733 #25 ENSGT00390000015977 #26 ENSGT00530000063723.a #28 ENSGT00900000141073 ENSGT00940000158044.a #31 ENSGT00390000004796 ENSGT00390000016767 #32 ENSGT00950000183078.b.b #33 ENSGT00400000022306 #34 ENSGT00940000160709 #35 ENSGT00940000156599 #37 ENSGT00390000016776 ENSGT00940000154764.r ENSGT00940000154764.q Testudinoidea ANCESTRAL SPECIES 26 ENSGT00940000156771 #7 ENSGT00940000161453 #8 ENSGT00940000153189.A #9 ENSGT00550000074919 #10 ENSGT00390000010239 #11 ENSGT00390000002511 #12 ENSGT00390000002408 #13 ENSGT00390000009662 #14 ENSGT00940000161769 #15 ENSGT00940000164668 #16 ENSGT00940000159913 ENSGT00530000064244.b #17 ENSGT00940000154816.a.b #18 ENSGT00390000018606 #19 ENSGT00940000158832 #20 ENSGT00940000155317.b #23 ENSGT00940000157027 #24 ENSGT00390000012733 #25 ENSGT00390000015977 #26 ENSGT00530000063723.a #28 ENSGT00900000141073 ENSGT00940000158044.a #31 ENSGT00390000004796 ENSGT00390000016767 #32 ENSGT00950000183078.b.b #33 ENSGT00400000022306 #34 ENSGT00940000160709 #35 ENSGT00940000156599 #37 ENSGT00390000016776 ENSGT00940000154764.r ENSGT00940000154764.q Emydidae ANCESTRAL SPECIES 37 ENSGT00940000156771 #7 ENSGT00940000161453 #8 ENSGT00940000153189.A #9 ENSGT00550000074919 #10 ENSGT00390000010239 #11 ENSGT00390000002511 #12 ENSGT00390000002408 #13 ENSGT00390000009662 #14 ENSGT00940000161769 #15 ENSGT00940000164668 #16 ENSGT00940000159913 ENSGT00530000064244.b #17 ENSGT00940000154816.a.b #18 ENSGT00390000018606 #19 ENSGT00940000158832 #20 ENSGT00940000155317.b #23 ENSGT00940000157027 #24 ENSGT00390000012733 #25 ENSGT00390000015977 #26 ENSGT00530000063723.a #28 ENSGT00900000141073 ENSGT00940000158044.a #31 ENSGT00390000004796 ENSGT00390000016767 #32 ENSGT00950000183078.b.b #33 ENSGT00400000022306 #34 ENSGT00940000160709 #35 ENSGT00940000156599 #37 ENSGT00390000016776 ENSGT00940000154764.r ENSGT00940000154764.q Three-toed box turtle MODERN SPECIES 109 YPEL1 (ENSTMTG00000006588) #8 ENSTMTG00000006576 #8 PPIL2 (ENSTMTG00000006549) #9 HIRA (ENSTMTG00000006496) #10 MRPL40 (ENSTMTG00000006483) #11 C22orf39 (ENSTMTG00000006471) #12 UFD1 (ENSTMTG00000006450) #13 CDC45 (ENSTMTG00000006349) #14 CLDN5 (ENSTMTG00000006328) #15 ENSTMTG00000006318 #16 SEPTIN5 (ENSTMTG00000006302) GP1BB (ENSTMTG00000006293) #17 TBX1 (ENSTMTG00000006219) #18 GNB1L (ENSTMTG00000006189) #19 TXNRD2 (ENSTMTG00000006150) #20 COMT (ENSTMTG00000006124) #23 ENSTMTG00000006082 #24 ENSTMTG00000006066 #24 TANGO2 (ENSTMTG00000006032) #25 DGCR8 (ENSTMTG00000005978) #26 TRMT2A (ENSTMTG00000005948) #28 RANBP1 (ENSTMTG00000005921) ZDHHC8 (ENSTMTG00000005901) #31 PGAM5 (ENSTMTG00000005881) ANKLE2 (ENSTMTG00000005808) #32 GOLGA3 (ENSTMTG00000005713) #33 CHFR (ENSTMTG00000005664) #34 FBRSL1 (ENSTMTG00000005619) #35 GALNT9 (ENSTMTG00000005565) #37 NOC4L (ENSTMTG00000005527) ENSTMTG00000003332 painted turtle MODERN SPECIES 712 MAPK1 (ENSCPBG00000010567) #7 YPEL1 (ENSCPBG00000010573) #8 PPIL2 (ENSCPBG00000010578) #9 HIRA (ENSCPBG00000010600) #10 MRPL40 (ENSCPBG00000010618) #11 C22orf39 (ENSCPBG00000010621) #12 UFD1 (ENSCPBG00000010625) #13 CDC45 (ENSCPBG00000010632) #14 CLDN5 (ENSCPBG00000010642) #15 ENSCPBG00000010648 #16 SEPTIN5 (ENSCPBG00000010660) ENSCPBG00000010670 #17 TBX1 (ENSCPBG00000010673) #18 GNB1L (ENSCPBG00000010679) #19 TXNRD2 (ENSCPBG00000010687) #20 COMT (ENSCPBG00000010707) #23 ARVCF (ENSCPBG00000010719) #24 ENSCPBG00000010734 ODF3L2 (ENSCPBG00000010739) ENSCPBG00000010743 C2CD4C (ENSCPBG00000010755) ENSCPBG00000010762 MIER2 (ENSCPBG00000010767) ENSCPBG00000010780 PLPP2 (ENSCPBG00000010793) ENSCPBG00000010802 ENSCPBG00000010809 ENSCPBG00000010822 ENSCPBG00000010838 GNA11 (ENSCPBG00000010843) GNA15 (ENSCPBG00000010851) Testudinidae ANCESTRAL SPECIES 32 ENSGT00940000156771 #7 ENSGT00940000161453 #8 ENSGT00940000153189.A #9 ENSGT00550000074919 #10 ENSGT00390000010239 #11 ENSGT00390000002511 #12 ENSGT00390000002408 #13 ENSGT00390000009662 #14 ENSGT00940000161769 #15 ENSGT00940000164668 #16 ENSGT00940000159913 ENSGT00530000064244.b #17 ENSGT00940000154816.a.b #18 ENSGT00390000018606 #19 ENSGT00940000158832.e #20 ENSGT00940000155317.b #23 ENSGT00940000157027 #24 ENSGT00390000012733 #25 ENSGT00390000015977 #26 ENSGT00530000063723.a #28 ENSGT00900000141073 ENSGT00940000158044.a #31 ENSGT00390000004796 ENSGT00390000016767 #32 ENSGT00950000183078.b.b #33 ENSGT00400000022306 #34 ENSGT00940000160709 #35 ENSGT00940000156599 #37 ENSGT00390000016776 ENSGT00940000154764.r ENSGT00940000154764.q Abingdon island giant tortoise MODERN SPECIES 2805 ENSCABG00000007882 #20 ENSCABG00000007902 #20 COMT (ENSCABG00000007925) #23 ARVCF (ENSCABG00000007928) #24 TANGO2 (ENSCABG00000007931) #25 DGCR8 (ENSCABG00000007932) #26 TRMT2A (ENSCABG00000007934) #28 RANBP1 (ENSCABG00000007936) ZDHHC8 (ENSCABG00000007939) #31 PGAM5 (ENSCABG00000007940) ANKLE2 (ENSCABG00000007943) #32 GOLGA3 (ENSCABG00000007987) #33 CHFR (ENSCABG00000008893) #34 FBRSL1 (ENSCABG00000009120) #35 Goode s thornscrub tortoise MODERN SPECIES 4 MAPK1 (ENSGEVG00005010443) #7 YPEL1 (ENSGEVG00005010427) #8 PPIL2 (ENSGEVG00005010363) #9 HIRA (ENSGEVG00005010294) #10 MRPL40 (ENSGEVG00005010273) #11 C22orf39 (ENSGEVG00005010249) #12 UFD1 (ENSGEVG00005010153) #13 CDC45 (ENSGEVG00005009692) #14 CLDN5 (ENSGEVG00005009598) #15 ENSGEVG00005009572 #16 SEPTIN5 (ENSGEVG00005020840) GP1BB (ENSGEVG00005020833) #17 TBX1 (ENSGEVG00005020830) #18 GNB1L (ENSGEVG00005020821) #19 TXNRD2 (ENSGEVG00005020803) #20 COMT (ENSGEVG00005020794) #23 ARVCF (ENSGEVG00005020783) #24 TANGO2 (ENSGEVG00005020772) #25 DGCR8 (ENSGEVG00005020763) #26 TRMT2A (ENSGEVG00005020759) #28 RANBP1 (ENSGEVG00005020755) ZDHHC8 (ENSGEVG00005020749) #31 PGAM5 (ENSGEVG00005020745) ANKLE2 (ENSGEVG00005020740) #32 GOLGA3 (ENSGEVG00005020729) #33 CHFR (ENSGEVG00005020717) #34 FBRSL1 (ENSGEVG00005020705) #35 GALNT9 (ENSGEVG00005020699) #37 ENSGEVG00005020697 NOC4L (ENSGEVG00005020692) ENSGEVG00005020679 Chinese turtle MODERN SPECIES 1998 TXNRD2 (ENSPSIG00000002338) #20 COMT (ENSPSIG00000002336) #23 ARVCF (ENSPSIG00000002320) #24 TANGO2 (ENSPSIG00000002316) #25 ENSPSIG00000002300 #26 TRMT2A (ENSPSIG00000002296) #28 RANBP1 (ENSPSIG00000002286) ZDHHC8 (ENSPSIG00000002284) #31 PGAM5 (ENSPSIG00000002282) ANKLE2 (ENSPSIG00000002280) #32 GOLGA3 (ENSPSIG00000002272) #33 ENSPSIG00000002270 CHFR (ENSPSIG00000002261) #34 Lepidosauria ANCESTRAL SPECIES 13 ENSGT00940000161453 #8 ENSGT00940000153189.A #9 ENSGT00910000148339 ENSGT00550000074919 #10 ENSGT00390000010239 #11 ENSGT00390000002511 #12 ENSGT00390000002408 #13 ENSGT00390000009662 #14 ENSGT00940000161769 #15 ENSGT00940000164668 #16 ENSGT00940000159913 ENSGT00530000064244.b #17 ENSGT00940000154816.a.b #18 ENSGT00390000018606 #19 ENSGT00940000158832 #20 ENSGT00940000155317.b #23 ENSGT00940000157027 #24 ENSGT00390000012733 #25 ENSGT00390000015977 #26 ENSGT01100000263932 ENSGT00530000063723.a #28 ENSGT00900000141073 ENSGT00940000158044.a #31 ENSGT00390000004796 ENSGT00390000016767 #32 ENSGT00950000183078.b.b #33 ENSGT00400000022306 #34 ENSGT00940000160709 #35 ENSGT00940000156599 #37 ENSGT00390000016776 ENSGT00940000154764 tuatara MODERN SPECIES 1417 MAPK1 (ENSSPUG00000015630) #7 YPEL1 (ENSSPUG00000015624) #8 PPIL2 (ENSSPUG00000015614) #9 ENSSPUG00000015606 HIRA (ENSSPUG00000015576) #10 MRPL40 (ENSSPUG00000015559) #11 C22orf39 (ENSSPUG00000015555) #12 UFD1 (ENSSPUG00000015540) #13 CDC45 (ENSSPUG00000015397) #14 CLDN5 (ENSSPUG00000015373) #15 ENSSPUG00000015358 #16 SEPTIN5 (ENSSPUG00000015346) TBX1 (ENSSPUG00000015171) #18 GNB1L (ENSSPUG00000015114) #19 TXNRD2 (ENSSPUG00000015085) #20 COMT (ENSSPUG00000015073) #23 ARVCF (ENSSPUG00000015048) #24 TANGO2 (ENSSPUG00000015039) #25 DGCR8 (ENSSPUG00000014967) #26 TRMT2A (ENSSPUG00000014938) #28 RANBP1 (ENSSPUG00000014907) ZDHHC8 (ENSSPUG00000014890) #31 PGAM5 (ENSSPUG00000014881) ANKLE2 (ENSSPUG00000014865) #32 GOLGA3 (ENSSPUG00000014748) #33 ENSSPUG00000014731 #34 ENSSPUG00000014722 #34 FBRSL1 (ENSSPUG00000014703) #35 Episquamata ANCESTRAL SPECIES 10 ENSGT00940000156771 #7 ENSGT00940000161453 #8 ENSGT00940000153189.A #9 ENSGT00550000074919 #10 ENSGT00390000010239 #11 ENSGT00390000002511 #12 ENSGT00390000002408 #13 ENSGT00390000009662 #14 ENSGT00940000161769 #15 ENSGT00940000164668 #16 ENSGT00940000159913 ENSGT00530000064244.b #17 ENSGT00940000154816.a.b #18 ENSGT00390000018606 #19 ENSGT00940000158832 #20 ENSGT00940000155317.b #23 ENSGT00940000157027 #24 ENSGT00390000012733 #25 ENSGT00390000015977 #26 ENSGT01100000263932 ENSGT00530000063723.a #28 ENSGT00900000141073 ENSGT00940000158044.a #31 ENSGT00390000004796 ENSGT00390000016767 #32 ENSGT00950000183078.b.b #33 ENSGT00400000022306 #34 ENSGT00940000160709 #35 ENSGT00940000156599 #37 ENSGT00390000016776 ENSGT00940000154764 Laterata ANCESTRAL SPECIES 12 ENSGT00940000156771 #7 ENSGT00940000161453 #8 ENSGT00940000153189.A #9 ENSGT00550000074919 #10 ENSGT00390000010239 #11 ENSGT00390000002511 #12 ENSGT00390000002408 #13 ENSGT00390000009662 #14 ENSGT00940000161769 #15 ENSGT00940000164668 #16 ENSGT00940000159913 ENSGT00530000064244.b #17 ENSGT00940000154816.a.b #18 ENSGT00390000018606 #19 ENSGT00940000158832 #20 ENSGT00940000155317.b #23 ENSGT00940000157027 #24 ENSGT00390000012733 #25 ENSGT00390000015977 #26 ENSGT01100000263932 ENSGT00530000063723.a #28 ENSGT00900000141073 ENSGT00940000158044.a #31 ENSGT00390000004796 ENSGT00390000016767 #32 ENSGT00950000183078.b.b #33 ENSGT00400000022306 #34 ENSGT00940000160709 #35 ENSGT00940000156599 #37 ENSGT00390000016776 ENSGT00940000154764 Common wall lizard MODERN SPECIES 7 PPIL2 (ENSPMRG00000019332) #9 ENSPMRG00000019369 HIRA (ENSPMRG00000015491) #10 MRPL40 (ENSPMRG00000015594) #11 C22orf39 (ENSPMRG00000015600) #12 UFD1 (ENSPMRG00000015607) #13 CDC45 (ENSPMRG00000015632) #14 CLDN5 (ENSPMRG00000015756) #15 ENSPMRG00000015777 #16 SEPTIN5 (ENSPMRG00000015832) GP1BB (ENSPMRG00000015868) #17 TBX1 (ENSPMRG00000015885) #18 GNB1L (ENSPMRG00000015903) #19 ENSPMRG00000015913 TXNRD2 (ENSPMRG00000015916) #20 COMT (ENSPMRG00000015933) #23 ARVCF (ENSPMRG00000015986) #24 ENSPMRG00000016121 ENSPMRG00000016129 TANGO2 (ENSPMRG00000016139) #25 ENSPMRG00000016150 DGCR8 (ENSPMRG00000016155) #26 TRMT2A (ENSPMRG00000016210) #28 ENSPMRG00000016444 #30 ZDHHC8 (ENSPMRG00000016456) #31 PGAM5 (ENSPMRG00000016473) ANKLE2 (ENSPMRG00000016482) #32 ENSPMRG00000016505 ENSPMRG00000016522 CHFR (ENSPMRG00000016532) #34 FBRSL1 (ENSPMRG00000016584) #35 Argentine black and white tegu MODERN SPECIES 41 MAPK1 (ENSSMRG00000009639) #7 C22orf39 (ENSSMRG00000009637) #12 MRPL40 (ENSSMRG00000009636) #11 HIRA (ENSSMRG00000009632) #10 PPIL2 (ENSSMRG00000009626) #9 YPEL1 (ENSSMRG00000009624) #8 UFD1 (ENSSMRG00000009622) #13 CDC45 (ENSSMRG00000009620) #14 CLDN5 (ENSSMRG00000009618) #15 ENSSMRG00000009616 #16 SEPTIN5 (ENSSMRG00000009610) GP1BB (ENSSMRG00000009606) #17 TBX1 (ENSSMRG00000009598) #18 GNB1L (ENSSMRG00000009589) #19 TXNRD2 (ENSSMRG00000008858) #20 COMT (ENSSMRG00000008856) #23 ARVCF (ENSSMRG00000008853) #24 TANGO2 (ENSSMRG00000008824) #25 DGCR8 (ENSSMRG00000008821) #26 ENSSMRG00000008820 TRMT2A (ENSSMRG00000008517) #28 RANBP1 (ENSSMRG00000008510) ZDHHC8 (ENSSMRG00000008504) #31 PGAM5 (ENSSMRG00000008501) ANKLE2 (ENSSMRG00000008494) #32 GOLGA3 (ENSSMRG00000008456) #33 CHFR (ENSSMRG00000008442) #34 FBRSL1 (ENSSMRG00000008432) #35 ENSSMRG00000008416 GALNT9 (ENSSMRG00000008404) #37 NOC4L (ENSSMRG00000008385) Toxicofera ANCESTRAL SPECIES 11 ENSGT00940000156771 #7 ENSGT00940000161453 #8 ENSGT00940000153189.A #9 ENSGT00550000074919 #10 ENSGT00390000010239 #11 ENSGT00390000002511 #12 ENSGT00390000002408 #13 ENSGT00390000009662 #14 ENSGT00940000161769 #15 ENSGT00940000164668 #16 ENSGT00940000159913 ENSGT00530000064244.b #17 ENSGT00940000154816.a.b #18 ENSGT00390000018606 #19 ENSGT00940000158832 #20 ENSGT00940000155317.b #23 ENSGT00940000157027 #24 ENSGT00390000012733 #25 ENSGT00390000015977 #26 ENSGT00530000063723.a #28 ENSGT00940000154389.b #30 ENSGT00900000141073 ENSGT00940000158044.a #31 ENSGT00390000004796 ENSGT00390000016767 #32 ENSGT00950000183078.b.b #33 ENSGT00400000022306 #34 ENSGT00940000160709 #35 ENSGT00940000156599 #37 ENSGT00390000016776 ENSGT00940000154764 Elapidae ANCESTRAL SPECIES 31 ENSGT00940000161453 #8 ENSGT00940000153189.A #9 ENSGT00550000074919 #10 ENSGT00390000010239 #11 ENSGT00390000002511 #12 ENSGT00390000002408 #13 ENSGT00390000009662 #14 ENSGT00940000161769 #15 ENSGT00940000164668.a #16 ENSGT00940000164668.b #16 ENSGT00940000159913 ENSGT00530000064244.b #17 ENSGT00940000154816.a.b #18 ENSGT00390000018606.a #19 ENSGT00940000158832 #20 ENSGT00940000155317.b #23 ENSGT00940000157027 #24 ENSGT00390000012733 #25 ENSGT00390000015977 #26 ENSGT00530000063723.a #28 ENSGT01100000263932 ENSGT00940000154389.b #30 ENSGT00940000158044.a #31 ENSGT00390000004796 ENSGT00390000016767 #32 ENSGT00950000183078.b.b #33 ENSGT00400000022306 #34 ENSGT00940000160709 #35 ENSGT00940000156599 #37 ENSGT00390000016776 ENSGT00940000154764 Indian cobra MODERN SPECIES 16 PPM1F (ENSNNAG00000011693) MAPK1 (ENSNNAG00000011720) #7 PPIL2 (ENSNNAG00000010191) #9 HIRA (ENSNNAG00000010271) #10 MRPL40 (ENSNNAG00000011130) #11 C22orf39 (ENSNNAG00000011158) #12 UFD1 (ENSNNAG00000011177) #13 CDC45 (ENSNNAG00000011239) #14 CLDN5 (ENSNNAG00000011688) #15 ENSNNAG00000011740 #16 SEPTIN5 (ENSNNAG00000011916) GP1BB (ENSNNAG00000011996) #17 TBX1 (ENSNNAG00000012016) #18 GNB1L (ENSNNAG00000012051) #19 TXNRD2 (ENSNNAG00000012130) #20 COMT (ENSNNAG00000012952) #23 ARVCF (ENSNNAG00000012973) #24 TANGO2 (ENSNNAG00000013067) #25 DGCR8 (ENSNNAG00000013101) #26 TRMT2A (ENSNNAG00000013153) #28 ENSNNAG00000013172 ENSNNAG00000013184 #30 ZDHHC8 (ENSNNAG00000013201) #31 PGAM5 (ENSNNAG00000013256) ANKLE2 (ENSNNAG00000013278) #32 GOLGA3 (ENSNNAG00000013460) #33 CHFR (ENSNNAG00000013508) #34 ENSNNAG00000013570 #35 ENSNNAG00000013578 #35 ENSNNAG00000013602 #37 ENSNNAG00000013676 #37 Elapidae_a ANCESTRAL SPECIES 79 ENSGT00940000161453 #8 ENSGT00940000153189.A #9 ENSGT00550000074919 #10 ENSGT00390000010239 #11 ENSGT00390000002511 #12 ENSGT00390000002408 #13 ENSGT00390000009662 #14 ENSGT00940000161769 #15 ENSGT00940000164668.b #16 ENSGT00940000159913 ENSGT00530000064244.b #17 ENSGT00940000154816.a.b #18 ENSGT00390000018606.b #19 ENSGT00390000018606.a #19 ENSGT00940000158832 #20 ENSGT00940000155317.b #23 ENSGT00940000157027 #24 ENSGT00390000012733.i.b #25 ENSGT00390000015977 #26 ENSGT00530000063723.a #28 ENSGT01100000263932 ENSGT00940000154389.b #30 ENSGT00940000158044.a #31 ENSGT00390000004796 ENSGT00390000016767 #32 ENSGT00950000183078.b.b #33 ENSGT00400000022306 #34 ENSGT00940000160709 #35 Acanthophiinae ANCESTRAL SPECIES 75 ENSGT00940000161453 #8 ENSGT00940000153189.A #9 ENSGT00550000074919.g #10 ENSGT00390000010239 #11 ENSGT00390000002511 #12 ENSGT00390000002408 #13 ENSGT00390000009662 #14 ENSGT00940000161769 #15 ENSGT00940000164668.b #16 ENSGT00940000159913 ENSGT00530000064244.b #17 ENSGT00940000154816.a.b #18 ENSGT00390000018606.b #19 ENSGT00390000018606.a #19 ENSGT00940000158832 #20 ENSGT00940000155317.b #23 ENSGT00940000157027 #24 ENSGT00390000012733.i.b #25 ENSGT00390000015977 #26 ENSGT00530000063723.a #28 ENSGT01100000263932 ENSGT00940000154389.b #30 ENSGT00940000158044.a #31 ENSGT00390000004796 ENSGT00390000016767 #32 ENSGT00950000183078.b.b #33 ENSGT00400000022306 #34 ENSGT00940000160709 #35 Eastern brown snake MODERN SPECIES 84 UBE2L3 (ENSPTXG00000008324) YDJC (ENSPTXG00000008321) SDF2L1 (ENSPTXG00000008320) TOP3B (ENSPTXG00000008319) PPM1F (ENSPTXG00000008311) MAPK1 (ENSPTXG00000008308) #7 YPEL1 (ENSPTXG00000008307) #8 PPIL2 (ENSPTXG00000007763) #9 CDC45 (ENSPTXG00000007564) #14 CLDN5 (ENSPTXG00000007562) #15 ENSPTXG00000007561 #16 SEPTIN5 (ENSPTXG00000007558) GP1BB (ENSPTXG00000007549) #17 GNB1L (ENSPTXG00000007547) #19 TXNRD2 (ENSPTXG00000007537) #20 COMT (ENSPTXG00000007535) #23 ARVCF (ENSPTXG00000018489) #24 ENSPTXG00000018488 #25 DGCR8 (ENSPTXG00000018485) #26 TRMT2A (ENSPTXG00000018484) #28 ENSPTXG00000018483 #30 ZDHHC8 (ENSPTXG00000018482) #31 PGAM5 (ENSPTXG00000018481) ANKLE2 (ENSPTXG00000018479) #32 CHFR (ENSPTXG00000018478) #34 ENSPTXG00000018474 #37 EP400 (ENSPTXG00000018429) PUS1 (ENSPTXG00000018427) ULK1 (ENSPTXG00000018426) MMP17 (ENSPTXG00000018425) SFSWAP (ENSPTXG00000018424) Mainland tiger snake MODERN SPECIES 290 YPEL1 (ENSNSUG00000009517) #8 PPIL2 (ENSNSUG00000009518) #9 HIRA (ENSNSUG00000009519) #10 MRPL40 (ENSNSUG00000009707) #11 C22orf39 (ENSNSUG00000009708) #12 UFD1 (ENSNSUG00000009709) #13 CDC45 (ENSNSUG00000009710) #14 CLDN5 (ENSNSUG00000009711) #15 ENSNSUG00000009713 #16 ENSNSUG00000009714 #16 SEPTIN5 (ENSNSUG00000009716) GP1BB (ENSNSUG00000009733) #17 TBX1 (ENSNSUG00000009734) #18 ENSNSUG00000009735 #19 TXNRD2 (ENSNSUG00000009736) #20 COMT (ENSNSUG00000009737) #23 Blue-lipped sea krait MODERN SPECIES 6139 COMT (ENSLLTG00000012197) #23 Coelacanth MODERN SPECIES 281 PPIL2 (ENSLACG00000014641) #9 ENSLACG00000014938 HIRA (ENSLACG00000014956) #10 MRPL40 (ENSLACG00000015070) #11 C22orf39 (ENSLACG00000015095) #12 UFD1 (ENSLACG00000015135) #13 CDC45 (ENSLACG00000015166) #14 CLDN5 (ENSLACG00000015285) #15 zgc:63587 (ENSLACG00000015335) #16 SEPTIN5 (ENSLACG00000015559) GP1BB (ENSLACG00000022424) #17 ENSLACG00000015988 TBX1 (ENSLACG00000016333) #18 GNB1L (ENSLACG00000016464) #19 TXNRD2 (ENSLACG00000016608) #20 ENSLACG00000016734 #23 ARVCF (ENSLACG00000016764) #24 TANGO2 (ENSLACG00000017405) #25 DGCR8 (ENSLACG00000017462) #26 TRMT2A (ENSLACG00000017494) #28 RANBP1 (ENSLACG00000017512) ZDHHC8 (ENSLACG00000017552) #31 PGAM5 (ENSLACG00000017696) GOLGA3 (ENSLACG00000017720) #33 ANKLE2 (ENSLACG00000017772) #32 ENSLACG00000017838 ENSLACG00000017852 CHFR (ENSLACG00000017864) #34 ENSLACG00000017916 #35 ENSLACG00000018070 #35 Euteleostomi DUPLICATION Euteleostomi ANCESTRAL SPECIES 152 ENSGT00600000085663 ENSGT00990000203541.b ENSGT00940000159563 ENSGT00940000159128 ENSGT00940000166196 ENSGT00940000161383 ENSGT00940000160502 ENSGT00530000063687.b.b.b ENSGT01030000234549.a.a.a.a.a.a ENSGT01030000234549.a.a.a.b ENSGT00730000111044 ENSGT00950000183005.a.a ENSGT00950000182827.B ENSGT00940000161689 ENSGT00940000158963 ENSGT00940000155317.a.a ##23 ENSGT00390000002062 ENSGT01030000234648.a.b.a.b ENSGT00390000012692 Sarcopterygii ANCESTRAL SPECIES 405 ENSGT00730000111044 ENSGT00950000183005.a.a ENSGT00950000182827.B ENSGT00940000161689 ENSGT00940000158963 ENSGT00940000155317.a.a ##23 ENSGT00390000002062 ENSGT01030000234648.a.b.a.b ENSGT00390000012692 Tetrapoda ANCESTRAL SPECIES 235 ENSGT00730000111044 ENSGT00950000183005.a.a ENSGT00950000182827.B ENSGT00940000161689 ENSGT00940000158963 ENSGT00940000155317.a.a ##23 ENSGT00390000002062 ENSGT01030000234648.a.b.a.b Anura ANCESTRAL SPECIES 561 ENSGT00940000155317.a.a ##23 ENSGT00390000002062 Leishan spiny toad MODERN SPECIES 12 ENSLLEG00000015341 ENSLLEG00000015305 ENSLLEG00000014957 ENSLLEG00000014916 GDI1 (ENSLLEG00000014696) ENSLLEG00000014500 ENSLLEG00000014459 ENSLLEG00000014450 ENSLLEG00000014440 ENSLLEG00000014195 SLC35A2 (ENSLLEG00000014108) ENSLLEG00000014085 OTUD5 (ENSLLEG00000014017) ENSLLEG00000013910 ENSLLEG00000012337 COMT (ENSLLEG00000011999) ##23 ABT1 (ENSLLEG00000011917) ENSLLEG00000011864 GRM6 (ENSLLEG00000011740) ENSLLEG00000011625 NDUFB11 (ENSLLEG00000011577) PQBP1 (ENSLLEG00000011392) TIMM17B (ENSLLEG00000010838) ENSLLEG00000010766 CDK20 (ENSLLEG00000010690) ENSLLEG00000010635 ENSLLEG00000010530 ENSLLEG00000010488 ANAPC2 (ENSLLEG00000010272) ENSLLEG00000010236 ENSLLEG00000010207 Frog MODERN SPECIES 27 ENSXETG00000005683 ##23 abt1 (ENSXETG00000048817) Amniota ANCESTRAL SPECIES 65 ENSGT00390000005780.a ENSGT00940000160485 ENSGT00940000156963.a.b ENSGT00940000158975 ENSGT00940000165541 ENSGT00390000003022 ENSGT00940000160369 ENSGT00390000016016.B ENSGT00390000012929 ENSGT00940000153231.A ENSGT00940000164289.a ENSGT00390000006665.b ENSGT00390000017352 ENSGT00730000111044 ENSGT00950000183005.a.a ENSGT00940000155317.a.a ##23 ENSGT00390000002062 ENSGT01030000234648.a.b.a.b ENSGT00390000017639 ENSGT00940000153634.a ENSGT00940000160063 ENSGT00730000110895.b.b ENSGT00940000161233 ENSGT00940000159173 ENSGT00530000063715.a ENSGT01030000234564.a.a.b.a ENSGT00940000166825 ENSGT00730000111146 Mammalia ANCESTRAL SPECIES 46 ENSGT00940000157571 ENSGT00390000018078 ENSGT00940000160485 ENSGT00940000156963.a.b ENSGT00940000158975 ENSGT00940000165541 ENSGT00390000003022 ENSGT00940000160369 ENSGT00390000012929 ENSGT00940000153231.A ENSGT00940000164289.a ENSGT00390000006665.b ENSGT00390000017352 ENSGT00730000111044 ENSGT00950000183005.a.a ENSGT00940000155317.a.a ##23 ENSGT00390000002062 ENSGT01030000234648.a.b.a.b ENSGT00390000017639 ENSGT00940000153634.a ENSGT00940000160063 ENSGT00730000110895.b.b ENSGT00940000161233 ENSGT00940000159173 ENSGT00530000063715.a ENSGT00940000159563 ENSGT00940000161156 ENSGT00940000159128 ENSGT00390000017780.e ENSGT00950000183102.C ENSGT00950000182827.B Platypus MODERN SPECIES 17 CDK16 (ENSOANG00000003108) ENSOANG00000050430 UBA1 (ENSOANG00000036317) ENSOANG00000004553 NDUFB11 (ENSOANG00000037175) ENSOANG00000046222 RBM10 (ENSOANG00000004552) ENSOANG00000004550 ENSOANG00000004774 ENSOANG00000047650 IMP4 (ENSOANG00000014598) ENSOANG00000014597 MON1B (ENSOANG00000039235) CXXC1 (ENSOANG00000014594) ENSOANG00000042027 ENSOANG00000051319 ##23 ABT1 (ENSOANG00000014590) GRM6 (ENSOANG00000014586) ENSOANG00000038903 WDR13 (ENSOANG00000006932) SUV39H1 (ENSOANG00000015959) WAS (ENSOANG00000015230) SLC38A5 (ENSOANG00000036935) ENSOANG00000014584 TBC1D25 (ENSOANG00000038580) EBP (ENSOANG00000012972) PORCN (ENSOANG00000005775) ENSOANG00000047880 HDAC6 (ENSOANG00000002256) GATA1 (ENSOANG00000010765) CDK20 (ENSOANG00000010766) Coelacanth MODERN SPECIES 3539 ENSLACG00000003910 comta (ENSLACG00000001552) ##23 ABT1 (ENSLACG00000000633) Actinopterygii ANCESTRAL SPECIES 136 ENSGT01030000234549.a.a.a.b ENSGT01030000234549.a.a.a.a.a.a ENSGT00530000063687.b.b.b ENSGT00940000160502 ENSGT00940000161383 ENSGT00940000166196 ENSGT00940000159128 ENSGT00940000166313 ENSGT00940000159563 ENSGT00990000203541.b ENSGT00600000085663 ENSGT00390000002062 ENSGT01030000234648.a.b.a.b.a.a ENSGT00390000012692 ENSGT00940000156963.a.b ENSGT00940000155317.a.a ##23 ENSGT01030000234648.a.b.a.b.b ENSGT00940000160485 ENSGT00390000005780.a ENSGT00390000018078 ENSGT00940000157571 ENSGT00940000165528 ENSGT00940000158963 ENSGT00940000161689 ENSGT00950000182827.B ENSGT00390000011863.c ENSGT00940000155869 ENSGT00940000162187 Neopterygii ANCESTRAL SPECIES 131 ENSGT01030000234549.a.a.a.b ENSGT01030000234549.a.a.a.a.a.a ENSGT00530000063687.b.b.b ENSGT00940000160502 ENSGT00940000161383 ENSGT00940000166196 ENSGT00940000159128 ENSGT00940000166313 ENSGT00940000159563 ENSGT00990000203541.b ENSGT00600000085663 ENSGT00390000002062 ENSGT01030000234648.a.b.a.b.a.a ENSGT00390000012692 ENSGT00940000156963.a.b ENSGT00940000155317.a.a ##23 ENSGT01030000234648.a.b.a.b.b ENSGT00940000160485 ENSGT00390000005780.a ENSGT00390000018078 ENSGT00940000157571 ENSGT00940000165528 ENSGT00940000158963 ENSGT00940000161689 ENSGT00950000182827.B ENSGT00390000011863.c ENSGT00940000155869 ENSGT00940000162187 ENSGT01050000244850.A.a Osteoglossocephalai ANCESTRAL SPECIES 116 ENSGT00940000159563 ENSGT00940000166313.b ENSGT00940000159128 ENSGT00940000161383.d.b ENSGT00940000160502 ENSGT00530000063687.b.b.b ENSGT00390000003348 ENSGT00940000159438 ENSGT00940000157503.i.a ENSGT00940000154102.b.a.b ENSGT00950000182955.a.b.a ENSGT01020000230394.e.a.a.b.a.b ENSGT00940000157877.b.g ENSGT00390000012692 ENSGT00940000156963.a.b ENSGT00940000155317.a.a ##23 ENSGT00390000002062 ENSGT01030000234648.a.b.a.b.a.a ENSGT00940000160485 ENSGT00390000005780.a ENSGT00390000018078 ENSGT00940000157571 ENSGT00940000165528 ENSGT00940000158963.b.b ENSGT00940000161689 ENSGT00950000182827.B ENSGT00390000011863.c ENSGT00940000155869 ENSGT00940000162187 ENSGT01050000244850.A.a.o.a ENSGT00940000164289.a Osteoglossiformes ANCESTRAL SPECIES 147 ENSGT00940000161383.d.b ENSGT00940000160502 ENSGT00530000063687.b.b.b ENSGT00390000003348 ENSGT00940000159438 ENSGT00940000157503.i.a ENSGT00940000158685 ENSGT00940000155480.d.m ENSGT00730000111044 ENSGT00940000154102.b.a.b ENSGT00950000182955.a.b.a ENSGT01020000230394.e.a.a.b.a.b ENSGT00940000157877.b.g ENSGT00390000012692 ENSGT00940000156963.a.b ENSGT00940000155317.a.a ##23 ENSGT00390000002062 ENSGT01030000234648.a.b.a.b.a.a ENSGT00940000160485 ENSGT00390000005780.a ENSGT00390000018078 ENSGT00940000157571 ENSGT00940000165528 ENSGT00940000158963.b.b ENSGT00940000163427.c ENSGT00950000182827.B ENSGT00390000011863.c ENSGT00940000155869 ENSGT00940000162187 ENSGT01050000244850.A.a.o.a ENSGT00940000164289.a Asian bonytongue MODERN SPECIES mecp2 (ENSSFOG00015029955) ENSSFOG00015001848 FGD1 (ENSSFOG00015001880) tfe3a (ENSSFOG00015001934) zgc:113363 (ENSSFOG00015032088) cxxc1a (ENSSFOG00015001940) ENSSFOG00015001950 ENSSFOG00015026264 ENSSFOG00015030516 abcd1 (ENSSFOG00015001977) PLXNB3 (ENSSFOG00015002059) SRPK3 (ENSSFOG00015002090) tsr2 (ENSSFOG00015002207) CDK16 (ENSSFOG00015002239) abt1 (ENSSFOG00015031363) comta (ENSSFOG00015032003) ##23 grm6a (ENSSFOG00015002324) USP11 (ENSSFOG00015002379) zgc:86609 (ENSSFOG00015002467) uxt (ENSSFOG00015002509) ENSSFOG00015002614 ENSSFOG00015002627 otud5a (ENSSFOG00015030449) pim2 (ENSSFOG00015002649) pim2 (ENSSFOG00015002666) slc35a2 (ENSSFOG00015002690) bcap31 (ENSSFOG00015002726) slc6a8 (ENSSFOG00015033035) slc6a8 (ENSSFOG00015002806) PNCK (ENSSFOG00015002842) plxna3 (ENSSFOG00015002896) P. kingsleyae MODERN SPECIES 301 ENSPKIG00000024006 ENSPKIG00000023994 mecp2 (ENSPKIG00000023979) ENSPKIG00000023954 FGD1 (ENSPKIG00000023905) tfe3a (ENSPKIG00000023885) ENSPKIG00000023877 cxxc1a (ENSPKIG00000023833) ENSPKIG00000023805 ENSPKIG00000023796 abcd1 (ENSPKIG00000023779) PLXNB3 (ENSPKIG00000023729) SRPK3 (ENSPKIG00000023691) tsr2 (ENSPKIG00000023676) CDK16 (ENSPKIG00000023637) comta (ENSPKIG00000023566) ##23 abt1 (ENSPKIG00000023588) grm6a (ENSPKIG00000023528) USP11 (ENSPKIG00000023476) zgc:86609 (ENSPKIG00000023431) uxt (ENSPKIG00000023407) ENSPKIG00000023382 Clupeocephala ANCESTRAL SPECIES 149 ENSGT01030000234648.a.b.a.b.a.a ENSGT00390000002062 ENSGT00940000161383.d.b ENSGT00940000159128 ENSGT00940000166313.b ENSGT00940000159563 ENSGT00990000203541.b ENSGT00600000085663 ENSGT00940000169444 ENSGT00940000154102.b.a.b ENSGT00950000182955.a.b.a ENSGT01020000230394.e.a.a.b.a.b ENSGT00940000157877.b.g ENSGT00390000012692 ENSGT00940000156963.a.b ENSGT00940000155317.a.a ##23 ENSGT01030000234648.a.b.a.b.a.b Otomorpha ANCESTRAL SPECIES 83 ENSGT00940000159128 ENSGT00940000167532 ENSGT00940000160502 ENSGT00530000063687.b.b.b ENSGT00390000003348 ENSGT00940000159438 ENSGT00940000157503.i.a ENSGT00730000111044 ENSGT00940000169444 ENSGT00940000154102.b.a.b ENSGT00950000182955.a.b.a ENSGT01020000230394.e.a.a.b.a.b ENSGT00940000157877.b.g ENSGT00390000012692 ENSGT00940000156963.a.b ENSGT00940000155317.a.a ##23 ENSGT01030000234648.a.b.a.b.a.b ENSGT00940000158963.b.a ENSGT00390000002062 ENSGT01030000234648.a.b.a.b.a.a ENSGT00940000160485 ENSGT00390000005780.a ENSGT00390000018078 ENSGT00940000157571 ENSGT00940000165528 ENSGT00940000158963.b.b ENSGT00940000161689 ENSGT00940000163427.c ENSGT00950000182827.B ENSGT00390000011863.c ENSGT00940000155869 Clupeiformes DUPLICATION Clupeiformes ANCESTRAL SPECIES ENSGT00940000155317.a.a.a ##23 Atlantic herring MODERN SPECIES 21 SEMA3F (ENSCHAG00000002507) camkvb (ENSCHAG00000008371) ENSCHAG00000008556 ENSCHAG00000008627 mon1a (ENSCHAG00000008722) ENSCHAG00000008726 ENSCHAG00000008741 nelfcd (ENSCHAG00000008753) ctsz (ENSCHAG00000009119) ENSCHAG00000009200 npepl1 (ENSCHAG00000009212) STX16 (ENSCHAG00000009836) mbd1b (ENSCHAG00000009904) ccdc120b (ENSCHAG00000009963) ENSCHAG00000010017 ENSCHAG00000011442 ##23 grm6b (ENSCHAG00000011535) otud5b (ENSCHAG00000011755) inavab (ENSCHAG00000011825) ENSCHAG00000011837 GPR25 (ENSCHAG00000011855) ENSCHAG00000011879 olfml3b (ENSCHAG00000011888) ENSCHAG00000011906 ENSCHAG00000011913 ENSCHAG00000011957 mxra8a (ENSCHAG00000012742) ENSCHAG00000012766 ENSCHAG00000012774 utp3 (ENSCHAG00000012804) ppcs (ENSCHAG00000012821) Clupeiformes ANCESTRAL SPECIES 86 ENSGT00940000156703.e.a ENSGT00940000156468.f ENSGT00940000157842.b ENSGT00390000006665.a ENSGT00940000159809 ENSGT00390000001799 ENSGT00940000155569.a.a ENSGT00530000063255.A ENSGT01000000214440.B ENSGT00950000183005.a.a ENSGT00940000154102.b.a.a ENSGT00940000157877.b.h ENSGT00940000155317.a.a.b ##23 ENSGT01030000234648.a.b.a.b.a.b ENSGT00940000158963.b.a ENSGT00940000154102.a.h ENSGT01050000244888.a.b ENSGT00940000160300.b.b ENSGT00940000158083.b ENSGT00940000157665.b ENSGT00510000046843.a.b.l ENSGT00390000001509.a ENSGT00950000182903.b.a.z ENSGT00940000166327 ENSGT00500000044947 ENSGT00950000182834.C ENSGT00390000009278.a ENSGT00940000166894 Atlantic herring MODERN SPECIES 20 ENSCHAG00000018208 ENSCHAG00000018192 ENSCHAG00000018158 HDAC6 (ENSCHAG00000016727) ENSCHAG00000016693 cdk20 (ENSCHAG00000016474) hcfc1b (ENSCHAG00000015879) tfe3a (ENSCHAG00000015756) FGD1 (ENSCHAG00000015518) ENSCHAG00000015450 abcd1 (ENSCHAG00000014730) PLXNB3 (ENSCHAG00000010819) SRPK3 (ENSCHAG00000010403) tsr2 (ENSCHAG00000010385) CDK16 (ENSCHAG00000006163) comta (ENSCHAG00000006027) ##23 abt1 (ENSCHAG00000006011) grm6a (ENSCHAG00000003869) USP11 (ENSCHAG00000001346) zgc:86609 (ENSCHAG00000000813) uxt (ENSCHAG00000000675) ENSCHAG00000000504 ENSCHAG00000000466 ENSCHAG00000000439 ENSCHAG00000000376 ENSCHAG00000000355 ENSCHAG00000000334 SNPH (ENSCHAG00000000315) sdcbp2 (ENSCHAG00000000281) fkbp1ab (ENSCHAG00000000250) ENSCHAG00000000212 Denticle herring DUPLICATION Denticle herring MODERN SPECIES 1 cdk20 (ENSDCDG00000013012) hcfc1b (ENSDCDG00000013119) ENSDCDG00000013911 mecp2 (ENSDCDG00000013979) ENSDCDG00000014265 FGD1 (ENSDCDG00000014316) ENSDCDG00000014841 tfe3a (ENSDCDG00000014843) mbd1a (ENSDCDG00000014854) ENSDCDG00000014860 abcd1 (ENSDCDG00000014869) PLXNB3 (ENSDCDG00000015001) SRPK3 (ENSDCDG00000020351) tsr2 (ENSDCDG00000021609) CDK16 (ENSDCDG00000021622) comta (ENSDCDG00000023828) ##23 abt1 (ENSDCDG00000023830) grm6a (ENSDCDG00000023855) USP11 (ENSDCDG00000026692) zgc:86609 (ENSDCDG00000030234) uxt (ENSDCDG00000030254) ELK1 (ENSDCDG00000030257) ENSDCDG00000030264 otud5a (ENSDCDG00000030287) pim2 (ENSDCDG00000030420) slc35a2 (ENSDCDG00000030422) bcap31 (ENSDCDG00000030429) slc6a8 (ENSDCDG00000030465) ENSDCDG00000032001 plxna3 (ENSDCDG00000032471) ptpn18 (ENSDCDG00000033724) Denticle herring MODERN SPECIES 3 arl8bb (ENSDCDG00000015351) ENSDCDG00000015348 SEMA3F (ENSDCDG00000021551) camkvb (ENSDCDG00000021439) ENSDCDG00000021427 mon1a (ENSDCDG00000021422) ENSDCDG00000021417 ENSDCDG00000021412 nelfcd (ENSDCDG00000021242) ctsz (ENSDCDG00000021228) npepl1 (ENSDCDG00000021220) STX16 (ENSDCDG00000021217) mbd1b (ENSDCDG00000021207) ccdc120b (ENSDCDG00000021198) SRPK3 (ENSDCDG00000021100) comtb (ENSDCDG00000021086) ##23 grm6b (ENSDCDG00000020548) otud5b (ENSDCDG00000020507) inavab (ENSDCDG00000020505) GPR25 (ENSDCDG00000020501) ENSDCDG00000020498 olfml3b (ENSDCDG00000020495) SYT6 (ENSDCDG00000020492) PLEKHG5 (ENSDCDG00000020321) mxra8a (ENSDCDG00000020313) dvl1b (ENSDCDG00000020176) utp3 (ENSDCDG00000020147) ppcs (ENSDCDG00000020135) foxj3 (ENSDCDG00000020106) PRDM2 (ENSDCDG00000020063) kaznb (ENSDCDG00000020060) Otophysi ANCESTRAL SPECIES 91 ENSGT00730000111044 ENSGT00940000169444 ENSGT00940000154102.b.a.b ENSGT00950000182955.a.b.a ENSGT01020000230394.e.a.a.b.a.b ENSGT00940000157877.b.g ENSGT00390000012692 ENSGT00940000156963.a.b ENSGT00940000155317.a.a ##23 ENSGT01030000234648.a.b.a.b.a.b ENSGT00940000158963.b.a ENSGT00390000006665.b.g ENSGT00940000155056.b ENSGT00940000163942.a ENSGT00940000158374.d ENSGT00940000166894 ENSGT00390000009278.a ENSGT00940000154570.a.a ENSGT00940000159410 ENSGT00940000165157 ENSGT00950000182834.C ENSGT00500000044947 ENSGT00940000160611 ENSGT00940000162210 Characiphysae ANCESTRAL SPECIES 41 ENSGT00940000159128 ENSGT00940000167532 ENSGT00940000160502 ENSGT00530000063687.b.b.b ENSGT00390000003348 ENSGT00940000159438 ENSGT00940000157503.i.a ENSGT00730000111044 ENSGT00940000169444 ENSGT00940000154102.b.a.b ENSGT00950000182955.a.b.a ENSGT01020000230394.e.a.a.b.a.b ENSGT00940000157877.b.g ENSGT00390000012692 ENSGT00940000156963.a.b ENSGT00940000155317.a.a ##23 ENSGT00390000002062 ENSGT01030000234648.a.b.a.b.a.a ENSGT00940000160485 ENSGT00390000005780.a ENSGT00390000018078 ENSGT00940000157571 ENSGT00940000165528 ENSGT00940000158963.b.b ENSGT00940000161689 ENSGT00940000163427.c ENSGT00950000182827.B ENSGT00390000011863.c ENSGT00940000155869 ENSGT00940000156776.c ENSGT01050000244850.A.a.o.a Channel catfish DUPLICATION Channel catfish MODERN SPECIES 24 irak1 (ENSIPUG00000013038) mecp2 (ENSIPUG00000013019) ENSIPUG00000013003 FGD1 (ENSIPUG00000012986) tfe3a (ENSIPUG00000012922) zgc:113363 (ENSIPUG00000012710) ntpcr (ENSIPUG00000012672) CXXC1 (ENSIPUG00000012610) mbd1a (ENSIPUG00000012547) CCDC120 (ENSIPUG00000012472) ABCD1 (ENSIPUG00000012423) PLXNB3 (ENSIPUG00000012302) srpk3 (ENSIPUG00000012200) tsr2 (ENSIPUG00000012170) cdk16 (ENSIPUG00000012114) comt (ENSIPUG00000012075) ##23 comt (ENSIPUG00000012058) ##23 abt1 (ENSIPUG00000012026) grm6a (ENSIPUG00000011995) usp11 (ENSIPUG00000011912) zgc:86609 (ENSIPUG00000011878) Uxt (ENSIPUG00000011857) elk1 (ENSIPUG00000011841) LRRN1 (ENSIPUG00000011826) otud5 (ENSIPUG00000011788) pim2 (ENSIPUG00000011752) slc35a2 (ENSIPUG00000011733) bcap31 (ENSIPUG00000011713) Slc6a8 (ENSIPUG00000011661) ENSIPUG00000011620 plxna3 (ENSIPUG00000011528) Channel catfish MODERN SPECIES 24 mecp2 (ENSIPUG00000013019) ENSIPUG00000013003 FGD1 (ENSIPUG00000012986) tfe3a (ENSIPUG00000012922) zgc:113363 (ENSIPUG00000012710) ntpcr (ENSIPUG00000012672) CXXC1 (ENSIPUG00000012610) mbd1a (ENSIPUG00000012547) CCDC120 (ENSIPUG00000012472) ABCD1 (ENSIPUG00000012423) PLXNB3 (ENSIPUG00000012302) srpk3 (ENSIPUG00000012200) tsr2 (ENSIPUG00000012170) cdk16 (ENSIPUG00000012114) comt (ENSIPUG00000012075) ##23 comt (ENSIPUG00000012058) ##23 abt1 (ENSIPUG00000012026) grm6a (ENSIPUG00000011995) usp11 (ENSIPUG00000011912) zgc:86609 (ENSIPUG00000011878) Uxt (ENSIPUG00000011857) elk1 (ENSIPUG00000011841) LRRN1 (ENSIPUG00000011826) otud5 (ENSIPUG00000011788) pim2 (ENSIPUG00000011752) slc35a2 (ENSIPUG00000011733) bcap31 (ENSIPUG00000011713) Slc6a8 (ENSIPUG00000011661) ENSIPUG00000011620 plxna3 (ENSIPUG00000011528) Ptpn18 (ENSIPUG00000011444) Characiphysae_b ANCESTRAL SPECIES 134 ENSGT00940000159128 ENSGT00940000167532 ENSGT00940000160502 ENSGT00530000063687.b.b.b ENSGT00390000003348 ENSGT00940000159438 ENSGT00940000157503.i.a ENSGT00730000111044 ENSGT00940000169444 ENSGT00940000154102.b.a.b ENSGT00950000182955.a.b.a ENSGT01020000230394.e.a.a.b.a.b ENSGT00940000157877.b.g ENSGT00390000012692 ENSGT00940000156963.a.b ENSGT00940000155317.a.a ##23 ENSGT01030000234648.a.b.a.b.a.b ENSGT00940000158963.b.a ENSGT00390000002062 ENSGT01030000234648.a.b.a.b.a.a ENSGT00940000160485 ENSGT00390000005780.a ENSGT00390000018078 ENSGT00940000157571 ENSGT00940000165528 ENSGT00940000158963.b.b ENSGT00940000163427.c ENSGT00950000182827.B ENSGT00390000011863.c ENSGT00940000155869 ENSGT00940000156776.c Electric eel DUPLICATION Electric eel MODERN SPECIES 462 ENSEEEG00000014927 comta (ENSEEEG00000014928) ##23 abt1 (ENSEEEG00000014948) grm6a (ENSEEEG00000014949) USP11 (ENSEEEG00000014951) zgc:86609 (ENSEEEG00000014956) uxt (ENSEEEG00000014959) ENSEEEG00000014960 ENSEEEG00000014961 otud5a (ENSEEEG00000014962) pim2 (ENSEEEG00000014982) slc35a2 (ENSEEEG00000014984) bcap31 (ENSEEEG00000014986) slc6a8 (ENSEEEG00000015001) ENSEEEG00000015767 ENSEEEG00000015770 Electric eel MODERN SPECIES 66 comtb (ENSEEEG00000000388) ##23 grm6b (ENSEEEG00000000371) otud5b (ENSEEEG00000000337) MON1B (ENSEEEG00000000316) BRPF3 (ENSEEEG00000000228) ENSEEEG00000000128 skib (ENSEEEG00000024169) ENSEEEG00000024165 kaznb (ENSEEEG00000024163) PRDM2 (ENSEEEG00000024162) foxj3 (ENSEEEG00000024161) lix1 (ENSEEEG00000024160) olfm1a (ENSEEEG00000024159) ENSEEEG00000024158 rxrab (ENSEEEG00000024157) ENSEEEG00000024152 Characoidei ANCESTRAL SPECIES 214 ENSGT00950000182893.a.a.b.b ENSGT00940000158405 ENSGT00940000160486.d.d ENSGT00940000164411 ENSGT00530000063631.b.n.a ENSGT00940000166313.a ENSGT00940000166196 ENSGT00940000161383.d.a ENSGT01030000234549.a.a.a.a.a.a ENSGT01030000234549.a.a.a.b ENSGT00940000155877 ENSGT00940000157503.i.b ENSGT00940000166392 ENSGT00950000183005.a.a ENSGT00940000154102.b.a.a ENSGT00940000155317.a.a ##23 ENSGT01030000234648.a.b.a.b.a.b ENSGT00940000158963.b.a ENSGT00390000006665.b.g ENSGT00940000155056.b ENSGT00940000163942.a ENSGT00940000158374.d Mexicana tetra MODERN SPECIES 21 tfe3a (ENSAMXG00000038236) zgc:113363 (ENSAMXG00000035901) cxxc1a (ENSAMXG00000016944) ENSAMXG00000016916 abcd1 (ENSAMXG00000040510) PLXNB3 (ENSAMXG00000016869) SRPK3 (ENSAMXG00000031741) tsr2 (ENSAMXG00000016817) CDK16 (ENSAMXG00000016796) comta (ENSAMXG00000016773) ##23 ENSAMXG00000017457 slc6a8 (ENSAMXG00000017442) bcap31 (ENSAMXG00000017416) slc35a2 (ENSAMXG00000017408) pim2 (ENSAMXG00000032454) otud5a (ENSAMXG00000038113) ENSAMXG00000025140 ENSAMXG00000017384 uxt (ENSAMXG00000039548) zgc:86609 (ENSAMXG00000040575) USP11 (ENSAMXG00000017309) ABTB1 (ENSAMXG00000040273) slc6a6a (ENSAMXG00000038150) grip2a (ENSAMXG00000036235) ssuh2rs1 (ENSAMXG00000017171) Red-bellied piranha DUPLICATION Red-bellied piranha MODERN SPECIES 358 ENSPNAG00000024736 mecp2 (ENSPNAG00000024721) ENSPNAG00000024681 FGD1 (ENSPNAG00000005886) tfe3a (ENSPNAG00000024609) zgc:113363 (ENSPNAG00000005751) cxxc1a (ENSPNAG00000006542) mbd1a (ENSPNAG00000024566) ENSPNAG00000003831 abcd1 (ENSPNAG00000024508) PLXNB3 (ENSPNAG00000024448) SRPK3 (ENSPNAG00000004866) tsr2 (ENSPNAG00000024167) CDK16 (ENSPNAG00000024144) ENSPNAG00000024081 comta (ENSPNAG00000024067) ##23 abt1 (ENSPNAG00000005087) Red-bellied piranha MODERN SPECIES 622 mbd1b (ENSPNAG00000018075) ccdc120b (ENSPNAG00000018137) comtb (ENSPNAG00000018256) ##23 grm6b (ENSPNAG00000018295) otud5b (ENSPNAG00000018357) MON1B (ENSPNAG00000018371) BRPF3 (ENSPNAG00000018439) ENSPNAG00000018493 PLCH2 (ENSPNAG00000018519) Cyprinoidei ANCESTRAL SPECIES 23 ENSGT01030000234549.a.a.a.b ENSGT00940000155877 ENSGT00940000157503.i.b ENSGT01060000253577 ENSGT00940000166392 ENSGT00950000183005.a.a ENSGT00940000154102.b.a.a ENSGT00730000111044 ENSGT00940000169444 ENSGT00940000154102.b.a.b ENSGT00950000182955.a.b.a ENSGT01020000230394.e.a.a.b.a.b ENSGT00940000157877.b.g ENSGT00390000012692 ENSGT00940000156963.a.b ENSGT00940000155317.a.a ##23 ENSGT01030000234648.a.b.a.b.a.b ENSGT00940000158963.b.a ENSGT00390000006665.b.g ENSGT00940000155056.b ENSGT00940000163942.a ENSGT00940000158374.d ENSGT00940000166894 ENSGT00390000009278.a ENSGT00940000154570.a.a ENSGT00940000159410 ENSGT00940000165157 ENSGT00950000182834.C ENSGT00500000044947 ENSGT00940000160611 ENSGT00940000162210 Cyprininae DUPLICATION Cyprininae DUPLICATION Cyprininae ANCESTRAL SPECIES 134 ENSGT00940000167532.b ENSGT00940000160502.j ENSGT00530000063687.b.b.b.t ENSGT00390000003348 ENSGT00940000159438.hb.b.a ENSGT00940000157503.i.a.d ENSGT00940000158685.t.b ENSGT00730000111044.s ENSGT00940000169444 ENSGT00940000154102.b.a.b.e ENSGT00950000182955.a.b.a.i ENSGT01020000230394.e.a.a.b.a.b.d ENSGT00940000157877.b.g.b ENSGT00390000012692.o ENSGT00940000156963.a.b.b ENSGT00940000155317.a.a.i.a ##23 ENSGT01030000234648.a.b.a.b.a.a.a ENSGT00940000160485.u ENSGT00390000005780.a.b ENSGT00390000018078.q ENSGT00940000157571.a.a ENSGT00940000165528.d ENSGT00940000158963.b.b.b ENSGT00940000163427.c.ab.b ENSGT00940000175166 ENSGT00950000182827.B.c ENSGT00390000011863.c.o.a ENSGT00940000155869.c ENSGT00940000156776.c ENSGT01050000244850.A.a.o.a.c ENSGT00940000164289.a.a Goldfish DUPLICATION Goldfish MODERN SPECIES 48 hcfc1b (ENSCARG00000013922) ENSCARG00000013822 mecp2 (ENSCARG00000013811) ENSCARG00000013801 FGD1 (ENSCARG00000013577) tfe3a (ENSCARG00000013560) zgc:113363 (ENSCARG00000013546) cxxc1a (ENSCARG00000013188) mbd1a (ENSCARG00000013159) ENSCARG00000013152 abcd1 (ENSCARG00000012822) ENSCARG00000011771 SRPK3 (ENSCARG00000011511) tsr2 (ENSCARG00000011484) CDK16 (ENSCARG00000011331) comta (ENSCARG00000011300) ##23 grm6a (ENSCARG00000009693) USP11 (ENSCARG00000009214) zgc:86609 (ENSCARG00000009187) uxt (ENSCARG00000009182) ENSCARG00000009172 ENSCARG00000009168 otud5a (ENSCARG00000009129) pim2 (ENSCARG00000009106) ENSCARG00000009101 slc35a2 (ENSCARG00000009092) bcap31 (ENSCARG00000009086) slc6a8 (ENSCARG00000007521) ENSCARG00000007441 plxna3 (ENSCARG00000006861) ptpn18 (ENSCARG00000006767) Goldfish MODERN SPECIES 48 igf3 (ENSCARG00000009038) serping1 (ENSCARG00000009057) doc2d (ENSCARG00000009097) ENSCARG00000009103 ENSCARG00000009111 B3GNT3 (ENSCARG00000009128) igf3 (ENSCARG00000009131) ENSCARG00000009142 ENSCARG00000009148 pip5k1bb (ENSCARG00000009171) fxn (ENSCARG00000009228) CEP350 (ENSCARG00000009262) ENSCARG00000009406 tsr2 (ENSCARG00000000289) CDK16 (ENSCARG00000000515) comta (ENSCARG00000001082) ##23 tjp2b (ENSCARG00000001129) fnbp1a (ENSCARG00000001268) atp2a2a (ENSCARG00000001415) anapc7 (ENSCARG00000001464) RAPGEF1 (ENSCARG00000001480) med27 (ENSCARG00000001483) NTNG2 (ENSCARG00000001491) endog (ENSCARG00000001493) DAB2IP (ENSCARG00000001541) phf19 (ENSCARG00000002591) traf1 (ENSCARG00000002660) FIBCD1 (ENSCARG00000002678) SLC2A6 (ENSCARG00000002699) kif2a (ENSCARG00000002963) CEPT1 (ENSCARG00000008304) Cyprininae_a ANCESTRAL SPECIES 258 ENSGT00940000157877.b.g.b ENSGT00390000012692.o ENSGT00940000156963.a.b.b ENSGT00940000155317.a.a.i.a ##23 ENSGT00390000002062.o ENSGT01030000234648.a.b.a.b.a.a.a ENSGT00940000160485.u ENSGT00390000005780.a.b ENSGT00390000018078.q ENSGT00940000157571.a.a ENSGT00940000165528.d ENSGT00940000158963.b.b.b ENSGT00940000163427.c.ab.b ENSGT00940000175166 ENSGT00950000182827.B.c ENSGT00390000011863.c.o.a ENSGT00940000155869.c ENSGT00940000156776.c ENSGT01050000244850.A.a.o.a.c Common carp reference MODERN SPECIES 23 ENSCCRG00000040806 cdk20 (ENSCCRG00000002150) hcfc1b (ENSCCRG00000002147) ENSCCRG00000021365 mecp2 (ENSCCRG00000062551) ENSCCRG00000021358 ENSCCRG00000021342 tfe3a (ENSCCRG00000025498) zgc:113363 (ENSCCRG00000025731) cxxc1a (ENSCCRG00000025486) ENSCCRG00000025735 abcd1 (ENSCCRG00000025744) ENSCCRG00000030157 SRPK3 (ENSCCRG00000080303) ENSCCRG00000069480 comta (ENSCCRG00000052635) ##23 ENSCCRG00000052636 grm6a (ENSCCRG00000018975) ENSCCRG00000043673 uxt (ENSCCRG00000054398) zgc:86609 (ENSCCRG00000011959) ENSCCRG00000064227 ENSCCRG00000071159 otud5a (ENSCCRG00000020046) pim2 (ENSCCRG00000071894) ENSCCRG00000071095 slc35a2 (ENSCCRG00000035398) bcap31 (ENSCCRG00000035634) slc6a8 (ENSCCRG00000035629) ENSCCRG00000051042 plxna3 (ENSCCRG00000051129) Golden-line barbel MODERN SPECIES 311 ENSSGRG00000043541 ENSSGRG00000042665 tsr2 (ENSSGRG00000042640) CDK16 (ENSSGRG00000042522) comta (ENSSGRG00000042520) ##23 abt1 (ENSSGRG00000042519) grm6a (ENSSGRG00000041831) USP11 (ENSSGRG00000041815) zgc:86609 (ENSSGRG00000041492) uxt (ENSSGRG00000041488) ENSSGRG00000041487 ENSSGRG00000041486 otud5a (ENSSGRG00000041484) pim2 (ENSSGRG00000041480) ENSSGRG00000041477 ENSSGRG00000041476 slc35a2 (ENSSGRG00000041475) bcap31 (ENSSGRG00000041454) slc6a8 (ENSSGRG00000041450) ENSSGRG00000041426 Cyprininae ANCESTRAL SPECIES 111 ENSGT00940000159438.hb.a ENSGT00940000157503.i.a.c ENSGT00940000158685.t.a ENSGT00730000111044.t ENSGT00940000154102.b.a.b.f ENSGT00950000182955.a.b.a.j ENSGT01020000230394.e.a.a.b.a.b.c ENSGT00940000157877.b.g.a ENSGT00390000012692.p ENSGT00940000156963.a.b.a ENSGT00940000155317.a.a.i.b ##23 ENSGT00390000002062.p ENSGT00390000002062.o ENSGT01030000234648.a.b.a.b.a.a.b ENSGT00940000160485.v ENSGT00390000005780.a.a ENSGT00390000018078.r ENSGT00940000157571.b ENSGT00940000165528.c ENSGT00940000158963.b.b.a ENSGT00940000163427.c.ab.a ENSGT00950000182827.B.d ENSGT00390000011863.c.p ENSGT00940000155869.d ENSGT01050000244850.A.a.o.a.d ENSGT00940000164289.a.b Cyprininae_a ANCESTRAL SPECIES 111 ENSGT00940000167532.a.b ENSGT00940000160502.i ENSGT00530000063687.b.b.b.s ENSGT00940000159438.hb.b.b ENSGT00940000159438.hb.a ENSGT00940000157503.i.a.c ENSGT00940000158685.t.a ENSGT00730000111044.t ENSGT00940000169444 ENSGT00940000154102.b.a.b.f ENSGT00950000182955.a.b.a.j ENSGT01020000230394.e.a.a.b.a.b.c ENSGT00940000157877.b.g.a ENSGT00390000012692.p ENSGT00940000156963.a.b.a ENSGT00940000155317.a.a.i.b ##23 ENSGT00390000002062.p ENSGT01030000234648.a.b.a.b.a.a.b ENSGT00940000160485.v ENSGT00390000005780.a.a ENSGT00390000018078.r ENSGT00940000157571.b ENSGT00940000165528.c ENSGT00940000158963.b.b.a ENSGT00950000182827.B.d ENSGT00390000011863.c.p ENSGT00940000155869.d ENSGT01050000244850.A.a.o.a.d ENSGT00940000164289.a.b ENSGT00720000108868.d ENSGT00940000155472.a.a.b Golden-line barbel MODERN SPECIES 63 ENSSGRG00000033395 cdk20 (ENSSGRG00000033396) hcfc1b (ENSSGRG00000033403) ENSSGRG00000033459 mecp2 (ENSSGRG00000033460) FGD1 (ENSSGRG00000033479) tfe3a (ENSSGRG00000033483) zgc:113363 (ENSSGRG00000033484) cxxc1a (ENSSGRG00000033487) ENSSGRG00000033490 abcd1 (ENSSGRG00000033492) PLXNB3 (ENSSGRG00000033604) SRPK3 (ENSSGRG00000034455) tsr2 (ENSSGRG00000035040) CDK16 (ENSSGRG00000035043) comta (ENSSGRG00000035052) ##23 abt1 (ENSSGRG00000035053) grm6a (ENSSGRG00000035056) USP11 (ENSSGRG00000035063) zgc:86609 (ENSSGRG00000036052) uxt (ENSSGRG00000036086) ENSSGRG00000036088 ENSSGRG00000036090 otud5a (ENSSGRG00000036096) slc35a2 (ENSSGRG00000036136) bcap31 (ENSSGRG00000036138) slc6a8 (ENSSGRG00000036141) plxna3 (ENSSGRG00000036305) ptpn18 (ENSSGRG00000036417) gripap1 (ENSSGRG00000036425) kcnd1 (ENSSGRG00000036535) Common carp reference MODERN SPECIES 17 ENSCCRG00000000990 ENSCCRG00000035394 cdk20 (ENSCCRG00000010099) ENSCCRG00000002126 mecp2 (ENSCCRG00000076063) ENSCCRG00000002107 tfe3a (ENSCCRG00000034728) zgc:113363 (ENSCCRG00000034733) cxxc1a (ENSCCRG00000034737) mbd1a (ENSCCRG00000065415) ENSCCRG00000035218 abcd1 (ENSCCRG00000035216) ENSCCRG00000030238 SRPK3 (ENSCCRG00000025752) ENSCCRG00000067741 comta (ENSCCRG00000025764) ##23 abt1 (ENSCCRG00000025767) grm6a (ENSCCRG00000044676) ENSCCRG00000042969 zgc:86609 (ENSCCRG00000075696) uxt (ENSCCRG00000068398) ENSCCRG00000058800 ##36 ENSCCRG00000019150 ENSCCRG00000069233 otud5a (ENSCCRG00000077446) slc35a2 (ENSCCRG00000081173) slc6a8 (ENSCCRG00000033069) ENSCCRG00000033025 plxna3 (ENSCCRG00000066638) ptpn18 (ENSCCRG00000005561) gripap1 (ENSCCRG00000005400) Goldfish DUPLICATION Goldfish MODERN SPECIES 3122 CDK16 (ENSCARG00000070092) comta (ENSCARG00000070089) ##23 abt1 (ENSCARG00000070087) ENSCARG00000070086 Goldfish MODERN SPECIES 1857 FGD1 (ENSCARG00000054608) tfe3a (ENSCARG00000054238) zgc:113363 (ENSCARG00000054198) cxxc1a (ENSCARG00000054070) ENSCARG00000053994 ENSCARG00000053939 PLXNB3 (ENSCARG00000053158) SRPK3 (ENSCARG00000053120) ENSCARG00000053076 CDK16 (ENSCARG00000050894) comta (ENSCARG00000050828) ##23 abt1 (ENSCARG00000050817) grm6a (ENSCARG00000050523) USP11 (ENSCARG00000049254) zgc:86609 (ENSCARG00000049008) uxt (ENSCARG00000048972) ENSCARG00000048957 ENSCARG00000048949 otud5a (ENSCARG00000047780) pim2 (ENSCARG00000047698) slc35a2 (ENSCARG00000047678) bcap31 (ENSCARG00000047662) slc6a8 (ENSCARG00000047363) ENSCARG00000047350 plxna3 (ENSCARG00000046997) ptpn18 (ENSCARG00000046896) Cyprininae DUPLICATION Cyprininae ANCESTRAL SPECIES 212 ENSGT00940000158405.e ENSGT00940000161531.b.a ENSGT00940000164411.b ENSGT00530000063631.b.n.a.a ENSGT00940000166313.a.a ENSGT00940000166196.f ENSGT00940000164702.b.b ENSGT01030000234549.a.a.a.a.a.a.a ENSGT01030000234549.a.a.a.b.gb ENSGT00940000155877.b ENSGT00940000157503.i.b.b ENSGT01060000253577 ENSGT00940000166392.a ENSGT00950000183005.a.a.f ENSGT00940000154102.b.a.a.b ENSGT00940000155317.a.a.j.a ##23 ENSGT01030000234648.a.b.a.b.a.b.b ENSGT00940000158963.b.a.a ENSGT00390000006665.b.g.b ENSGT00940000155056.b.a ENSGT00940000163942.a.b ENSGT00940000158374.d.a ENSGT00940000166894.a ENSGT00390000009278.a.b ENSGT00940000154570.a.a.c ENSGT00940000159410.o ENSGT00940000165157.db ENSGT00950000182834.C.a ENSGT00940000160611.n ENSGT00940000162210.a ENSGT00940000160586.j Goldfish MODERN SPECIES 142 tp53inp2 (ENSCARG00000035332) ENSCARG00000035337 top1a (ENSCARG00000035362) ENSCARG00000036550 fam83d (ENSCARG00000036570) mafbb (ENSCARG00000036595) adnpa (ENSCARG00000036603) gata1a (ENSCARG00000036620) hcfc1a (ENSCARG00000036717) opn1sw2 (ENSCARG00000037260) ENSCARG00000037307 tfe3b (ENSCARG00000037442) cxxc1b (ENSCARG00000040392) mbd1b (ENSCARG00000040889) ccdc120b (ENSCARG00000040903) comtb (ENSCARG00000040935) ##23 grm6b (ENSCARG00000040997) otud5b (ENSCARG00000042249) MON1B (ENSCARG00000042471) BRPF3 (ENSCARG00000042547) ENSCARG00000042717 PLCH2 (ENSCARG00000042766) skib (ENSCARG00000043193) tmem51b (ENSCARG00000043270) kaznb (ENSCARG00000043310) PRDM2 (ENSCARG00000043363) foxj3 (ENSCARG00000043419) ppcs (ENSCARG00000043618) rbm12 (ENSCARG00000043629) cpne1 (ENSCARG00000043687) ENSCARG00000045070 Cyprininae_a ANCESTRAL SPECIES 3 ENSGT00940000158405.e ENSGT00940000161531.b.a ENSGT00940000164411.b ENSGT00530000063631.b.n.a.a ENSGT00940000166313.a.a ENSGT00940000166196.f ENSGT00940000164702.b.b ENSGT01030000234549.a.a.a.a.a.a.a ENSGT01030000234549.a.a.a.b.gb ENSGT00940000155877.b ENSGT00940000157503.i.b.b ENSGT01060000253577 ENSGT00940000166392.a ENSGT00950000183005.a.a.f ENSGT00940000154102.b.a.a.b ENSGT00940000155317.a.a.j.a ##23 ENSGT01030000234648.a.b.a.b.a.b.b ENSGT00940000158963.b.a.a ENSGT00390000006665.b.g.b ENSGT00940000155056.b.a ENSGT00940000163942.a.b ENSGT00940000158374.d.a ENSGT00940000166894.a ENSGT00390000009278.a.b ENSGT00940000154570.a.a.c ENSGT00940000159410.o ENSGT00940000165157.db ENSGT00950000182834.C.a ENSGT00940000160611.n ENSGT00940000162210.a ENSGT00940000160586.j Golden-line barbel MODERN SPECIES 1 tp53inp2 (ENSSGRG00000030273) top1a (ENSSGRG00000029390) fam83d (ENSSGRG00000029370) mafbb (ENSSGRG00000029369) ENSSGRG00000029368 ENSSGRG00000029367 si:dkey-13a21.4 (ENSSGRG00000029365) hcfc1a (ENSSGRG00000028465) opn1sw2 (ENSSGRG00000028454) LWS1 (ENSSGRG00000028050) gnl3l (ENSSGRG00000028038) tfe3b (ENSSGRG00000028032) cxxc1b (ENSSGRG00000027621) mbd1b (ENSSGRG00000027615) ccdc120b (ENSSGRG00000027614) comtb (ENSSGRG00000027613) ##23 grm6b (ENSSGRG00000027612) otud5b (ENSSGRG00000027407) ENSSGRG00000027405 BRPF3 (ENSSGRG00000027403) ENSSGRG00000027402 ENSSGRG00000027280 skib (ENSSGRG00000027272) tmem51b (ENSSGRG00000027271) ENSSGRG00000027270 kaznb (ENSSGRG00000027269) Common carp reference MODERN SPECIES 42 tp53inp2 (ENSCCRG00000043585) ENSCCRG00000063625 ENSCCRG00000043578 top1a (ENSCCRG00000076066) fam83d (ENSCCRG00000043564) ENSCCRG00000043364 adnpa (ENSCCRG00000043343) hcfc1a (ENSCCRG00000058227) opn1sw2 (ENSCCRG00000034760) ENSCCRG00000042194 tfe3b (ENSCCRG00000076795) ENSCCRG00000082624 cxxc1b (ENSCCRG00000041918) mbd1b (ENSCCRG00000079505) ccdc120b (ENSCCRG00000040452) comtb (ENSCCRG00000055844) ##23 grm6b (ENSCCRG00000040460) otud5b (ENSCCRG00000039550) ENSCCRG00000039580 ENSCCRG00000039624 ENSCCRG00000066958 ENSCCRG00000040353 skib (ENSCCRG00000055470) kaznb (ENSCCRG00000048175) ENSCCRG00000002530 foxj3 (ENSCCRG00000002519) ppcs (ENSCCRG00000007743) rbm12 (ENSCCRG00000052976) cpne1 (ENSCCRG00000029688) ENSCCRG00000029635 ENSCCRG00000081943 Cyprininae ANCESTRAL SPECIES 17 ENSGT00950000182893.a.a.b.b.a ENSGT00940000158405.f ENSGT00940000161531.b.b ENSGT00940000164411.a ENSGT00530000063631.b.n.a.b ENSGT00940000166313.a.b ENSGT00940000166196.e ENSGT00940000164702.b.a ENSGT01030000234549.a.a.a.a.a.a.b ENSGT01030000234549.a.a.a.b.fb ENSGT00940000155877.a ENSGT00940000157503.i.b.a ENSGT00940000166392.b ENSGT00950000183005.a.a.e ENSGT00940000154102.b.a.a.a ENSGT00940000155317.a.a.j.b ##23 ENSGT01030000234648.a.b.a.b.a.b.a ENSGT00940000158963.b.a.b ENSGT00390000006665.b.g.a ENSGT00940000155056.b.b ENSGT00940000163942.a.a ENSGT00940000158374.d.b ENSGT00940000166894.b ENSGT00390000009278.a.a ENSGT00940000154570.a.a.d ENSGT00940000159410.p ENSGT00940000165157.cb ENSGT00950000182834.C.b ENSGT00500000044947 ENSGT00940000160611.m ENSGT00940000162210.b Cyprininae_a ANCESTRAL SPECIES 9 ENSGT00950000182893.a.a.b.b.a ENSGT00940000158405.f ENSGT00940000161531.b.b ENSGT00940000164411.a ENSGT00530000063631.b.n.a.b ENSGT00940000166313.a.b ENSGT00940000166196.e ENSGT00940000164702.b.a ENSGT01030000234549.a.a.a.a.a.a.b ENSGT01030000234549.a.a.a.b.fb ENSGT00940000155877.a ENSGT00940000157503.i.b.a ENSGT00940000166392.b ENSGT00950000183005.a.a.e ENSGT00940000154102.b.a.a.a ENSGT00940000155317.a.a.j.b ##23 ENSGT01030000234648.a.b.a.b.a.b.a ENSGT00940000158963.b.a.b ENSGT00390000006665.b.g.a ENSGT00940000155056.b.b ENSGT00940000163942.a.a ENSGT00940000158374.d.b ENSGT00940000166894.b ENSGT00390000009278.a.a ENSGT00940000154570.a.a.d ENSGT00940000159410.p ENSGT00940000165157.cb ENSGT00950000182834.C.b ENSGT00500000044947 ENSGT00940000160611.m ENSGT00940000162210.b Common carp reference MODERN SPECIES 13 top1a (ENSCCRG00000043096) ENSCCRG00000043267 fam83d (ENSCCRG00000043259) mafbb (ENSCCRG00000071188) ENSCCRG00000062076 adnpa (ENSCCRG00000067055) gata1a (ENSCCRG00000005129) si:dkey-13a21.4 (ENSCCRG00000005132) hcfc1a (ENSCCRG00000018417) ENSCCRG00000034762 gnl3l (ENSCCRG00000034764) tfe3b (ENSCCRG00000042182) cxxc1b (ENSCCRG00000040395) mbd1b (ENSCCRG00000040434) ccdc120b (ENSCCRG00000041901) comtb (ENSCCRG00000058467) ##23 grm6b (ENSCCRG00000039534) otud5b (ENSCCRG00000055331) ENSCCRG00000040483 ENSCCRG00000056706 ENSCCRG00000082610 ENSCCRG00000039484 skib (ENSCCRG00000039528) tmem51b (ENSCCRG00000066188) kaznb (ENSCCRG00000041361) PRDM2 (ENSCCRG00000066868) foxj3 (ENSCCRG00000041882) ENSCCRG00000075282 ppcs (ENSCCRG00000018688) utp3 (ENSCCRG00000018699) rbm12 (ENSCCRG00000056406) Goldfish MODERN SPECIES 2 ENSCARG00000011309 fam83d (ENSCARG00000011289) mafbb (ENSCARG00000011282) ENSCARG00000011231 adnpa (ENSCARG00000011224) gata1a (ENSCARG00000011209) si:dkey-13a21.4 (ENSCARG00000011198) hcfc1a (ENSCARG00000010684) opn1sw2 (ENSCARG00000010620) ENSCARG00000010595 gnl3l (ENSCARG00000010084) tfe3b (ENSCARG00000010567) cxxc1b (ENSCARG00000009899) mbd1b (ENSCARG00000009878) ccdc120b (ENSCARG00000009875) comtb (ENSCARG00000009856) ##23 grm6b (ENSCARG00000009850) otud5b (ENSCARG00000009489) MON1B (ENSCARG00000009463) BRPF3 (ENSCARG00000009425) ENSCARG00000009384 skib (ENSCARG00000009364) tmem51b (ENSCARG00000009358) kaznb (ENSCARG00000009343) PRDM2 (ENSCARG00000009321) foxj3 (ENSCARG00000009213) ppcs (ENSCARG00000009197) ENSCARG00000039027 rbm12 (ENSCARG00000039023) cpne1 (ENSCARG00000034515) ENSCARG00000034251 Zebrafish DUPLICATION Zebrafish MODERN SPECIES 23 cdk20 (ENSDARG00000003867) hcfc1b (ENSDARG00000012519) ENSDARG00000025949 mecp2 (ENSDARG00000014218) FGD1 (ENSDARG00000100402) tfe3a (ENSDARG00000098903) zgc:113363 (ENSDARG00000101206) cxxc1a (ENSDARG00000101996) mbd1a (ENSDARG00000101205) ENSDARG00000012449 abcd1 (ENSDARG00000074876) ENSDARG00000032990 SRPK3 (ENSDARG00000005916) tsr2 (ENSDARG00000005772) CDK16 (ENSDARG00000032072) comta (ENSDARG00000015337) ##23 abt1 (ENSDARG00000043666) grm6a (ENSDARG00000017742) ENSDARG00000076303 zgc:86609 (ENSDARG00000029479) uxt (ENSDARG00000019339) ELK1 (ENSDARG00000078066) ENSDARG00000077112 otud5a (ENSDARG00000059006) pim2 (ENSDARG00000059001) ENSDARG00000093019 slc35a2 (ENSDARG00000058990) bcap31 (ENSDARG00000044972) slc6a8 (ENSDARG00000043646) ENSDARG00000043648 plxna3 (ENSDARG00000007172) Zebrafish MODERN SPECIES 2 mafbb (ENSDARG00000070542) ENSDARG00000070541 adnpa (ENSDARG00000062002) gata1a (ENSDARG00000013477) si:dkey-13a21.4 (ENSDARG00000026098) hcfc1a (ENSDARG00000015990) opn1sw2 (ENSDARG00000017274) opn1lw1 (ENSDARG00000044862) opn1lw2 (ENSDARG00000044861) gnl3l (ENSDARG00000020595) tfe3b (ENSDARG00000019457) si:dkey-245f22.3 (ENSDARG00000097510) cxxc1b (ENSDARG00000025718) mbd1b (ENSDARG00000025699) ccdc120b (ENSDARG00000032856) comtb (ENSDARG00000025679) ##23 grm6b (ENSDARG00000025671) otud5b (ENSDARG00000056840) MON1B (ENSDARG00000077434) BRPF3 (ENSDARG00000070513) ENSDARG00000070511 PLCH2 (ENSDARG00000056805) skib (ENSDARG00000008034) tmem51b (ENSDARG00000061916) kaznb (ENSDARG00000006601) PRDM2 (ENSDARG00000076451) foxj3 (ENSDARG00000075774) ppcs (ENSDARG00000061889) utp3 (ENSDARG00000056720) cpne1 (ENSDARG00000075536) rbm12 (ENSDARG00000100636) Euteleosteomorpha ANCESTRAL SPECIES 5 ENSGT00940000164411 ENSGT00530000063631.b.n.a ENSGT01090000260003.a.b.b.a.a.b.b.a.l ENSGT00940000166313.a ENSGT00940000166196 ENSGT00940000161383.d.a ENSGT00940000164702.b ENSGT01030000234549.a.a.a.a.a.a ENSGT01030000234549.a.a.a.b ENSGT00940000155877 ENSGT00940000157503.i.b ENSGT00940000166392 ENSGT00950000183005.a.a ENSGT00940000154102.b.a.a ENSGT00940000157877.b.h ENSGT00940000155317.a.a ##23 ENSGT01030000234648.a.b.a.b.a.b ENSGT00390000007696 ENSGT00390000006665.a ENSGT00940000157842.b ENSGT00940000156468.f ENSGT00940000156703.e.a ENSGT00940000154861.n.a ENSGT00940000158384.d ENSGT00940000155071.C ENSGT00940000177280 ENSGT00940000162663 ENSGT00940000157154.d ENSGT01050000244882.b.c.a.a ENSGT00390000009678 ENSGT00390000008631.a.o.a Acanthomorphata ANCESTRAL SPECIES 42 ENSGT00530000063631.b.n.a ENSGT01090000260003.a.b.b.a.a.b.b.a.l ENSGT00940000166313.a ENSGT00940000166196 ENSGT00940000161383.d.a ENSGT01030000234549.a.a.a.a.a.a.c ENSGT00940000164702.b ENSGT01030000234549.a.a.a.a.a.a.d ENSGT01030000234549.a.a.a.b ENSGT00940000155877 ENSGT00940000157503.i.b ENSGT00940000166392 ENSGT00950000183005.a.a ENSGT00940000154102.b.a.a ENSGT00940000157877.b.h ENSGT00940000155317.a.a ##23 ENSGT01030000234648.a.b.a.b.a.b ENSGT00390000007696 ENSGT00390000006665.a ENSGT00940000157842.b ENSGT00940000156468.f ENSGT00940000156703.e.a ENSGT00940000154861.n.a ENSGT00530000063548.A ENSGT00940000158384.d ENSGT00940000155071.C ENSGT00940000177280 ENSGT00940000162663 ENSGT00940000157154.d ENSGT01050000244882.b.c.a.a ENSGT00390000009678 Cod MODERN SPECIES 4 adnpa (ENSGMOG00000036285) ENSGMOG00000025656 gata1a (ENSGMOG00000029187) si:dkey-13a21.4 (ENSGMOG00000024459) ENSGMOG00000018011 opn1sw2 (ENSGMOG00000018045) opn1sw2 (ENSGMOG00000018054) gnl3l (ENSGMOG00000018085) tfe3b (ENSGMOG00000018115) cxxc1b (ENSGMOG00000002734) ENSGMOG00000036759 ccdc120b (ENSGMOG00000029914) ENSGMOG00000002647 ENSGMOG00000011937 ENSGMOG00000020337 ENSGMOG00000002636 ##23 grm6b (ENSGMOG00000002607) traip (ENSGMOG00000002576) mon1a (ENSGMOG00000024519) ENSGMOG00000032890 camkvb (ENSGMOG00000002479) ENSGMOG00000002430 arl8bb (ENSGMOG00000002416) ENSGMOG00000002389 bhlhe40 (ENSGMOG00000031170) ITPR1 (ENSGMOG00000002239) setmar (ENSGMOG00000034115) LRRN1 (ENSGMOG00000020177) HRH1 (ENSGMOG00000034842) ATG7 (ENSGMOG00000010427) vgll4b (ENSGMOG00000010444) Euacanthomorphacea ANCESTRAL SPECIES 1 ENSGT00940000164411 ENSGT00530000063631.b.n.a ENSGT01090000260003.a.b.b.a.a.b.b.a.l ENSGT00940000166313.a ENSGT00940000166196 ENSGT00940000164702.b ENSGT01030000234549.a.a.a.a.a.a.c ENSGT01030000234549.a.a.a.a.a.a.d ENSGT01030000234549.a.a.a.b ENSGT00940000155877 ENSGT00940000157503.i.b ENSGT00940000166392 ENSGT00950000183005.a.a ENSGT00940000154102.b.a.a ENSGT00940000157877.b.h ENSGT00940000155317.a.a ##23 ENSGT01030000234648.a.b.a.b.a.b ENSGT00390000007696 ENSGT00390000006665.a ENSGT00940000157842.b ENSGT00940000156468.f ENSGT00940000156703.e.a ENSGT00940000154861.n.a ENSGT00530000063548.A ENSGT00940000158384.d ENSGT00940000155071.C ENSGT00940000177280 ENSGT00940000162663 ENSGT00940000157154.d ENSGT01050000244882.b.c.a.a ENSGT00390000009678 Pinecone sodierfish MODERN SPECIES 19 ENSMMDG00005007895 adnpa (ENSMMDG00005007898) BCL2L1 (ENSMMDG00005007904) gata1a (ENSMMDG00005007905) si:dkey-13a21.4 (ENSMMDG00005007907) hcfc1a (ENSMMDG00005007918) opn1sw2 (ENSMMDG00005007982) opn1sw2 (ENSMMDG00005008017) opn1lw1 (ENSMMDG00005008024) gnl3l (ENSMMDG00005008026) tfe3b (ENSMMDG00005008031) cxxc1b (ENSMMDG00005008061) mbd1b (ENSMMDG00005008899) ccdc120b (ENSMMDG00005008902) SRPK3 (ENSMMDG00005008906) comtb (ENSMMDG00005008931) ##23 grm6b (ENSMMDG00005008936) traip (ENSMMDG00005008941) mon1a (ENSMMDG00005008952) ENSMMDG00005008960 camkvb (ENSMMDG00005008983) SEMA3F (ENSMMDG00005008991) arl8bb (ENSMMDG00005008996) NAAA (ENSMMDG00005009008) bhlhe40 (ENSMMDG00005009011) ITPR1 (ENSMMDG00005009020) ENSMMDG00005009072 setmar (ENSMMDG00005009073) lrrn1 (ENSMMDG00005009074) ENSMMDG00005009079 trnt1 (ENSMMDG00005009082) Percomorphaceae ANCESTRAL SPECIES 1 ENSGT00940000164411 ENSGT00530000063631.b.n.a ENSGT01090000260003.a.b.b.a.a.b.b.a.l ENSGT00940000166313.a ENSGT00940000166196 ENSGT00940000164702.b ENSGT01030000234549.a.a.a.a.a.a.c.a.b ENSGT01030000234549.a.a.a.a.a.a.d ENSGT01030000234549.a.a.a.b ENSGT00940000155877 ENSGT00940000157503.i.b ENSGT00940000166392 ENSGT00950000183005.a.a ENSGT00940000154102.b.a.a ENSGT00940000157877.b.h ENSGT00940000155317.a.a ##23 ENSGT01030000234648.a.b.a.b.a.b ENSGT00390000007696 ENSGT00390000006665.a ENSGT00940000157842.b ENSGT00940000156468.f ENSGT00940000156703.e.a ENSGT00940000154861.n.a ENSGT00530000063548.A ENSGT00940000158384.d ENSGT00940000155071.C ENSGT00940000177280 ENSGT00940000162663 ENSGT00940000157154.d ENSGT01050000244882.b.c.a.a ENSGT00390000009678 Tiger tail seahorse MODERN SPECIES 280 adnpa (ENSHCOG00000003771) ENSHCOG00000003780 gata1a (ENSHCOG00000003808) HCFC1 (ENSHCOG00000003837) opn1sw2 (ENSHCOG00000005841) opn1sw2 (ENSHCOG00000006937) opn1sw2 (ENSHCOG00000007007) ENSHCOG00000008361 ENSHCOG00000009761 gnl3l (ENSHCOG00000009877) tfe3b (ENSHCOG00000009907) cxxc1b (ENSHCOG00000009945) mbd1b (ENSHCOG00000009952) ccdc120b (ENSHCOG00000000314) SRPK3 (ENSHCOG00000009982) comtb (ENSHCOG00000010157) ##23 grm6b (ENSHCOG00000010199) traip (ENSHCOG00000010255) mon1a (ENSHCOG00000010263) ENSHCOG00000010321 camkvb (ENSHCOG00000010400) SEMA3F (ENSHCOG00000010442) arl8bb (ENSHCOG00000010468) ENSHCOG00000010474 bhlhe40 (ENSHCOG00000010486) ENSHCOG00000000326 ITPR1 (ENSHCOG00000010574) ENSHCOG00000010596 setmar (ENSHCOG00000010603) lrrn1 (ENSHCOG00000010606) trnt1 (ENSHCOG00000010618) Percomorphaceae_B ANCESTRAL SPECIES 3 ENSGT00940000166313.a ENSGT00940000164702.b ENSGT01030000234549.a.a.a.a.a.a.c.b ENSGT00940000166196 ENSGT00940000161383.d.a ENSGT01030000234549.a.a.a.a.a.a.c.a.b ENSGT01030000234549.a.a.a.a.a.a.d ENSGT01030000234549.a.a.a.b ENSGT00940000155877 ENSGT00940000157503.i.b ENSGT00940000181969 ENSGT00940000166392 ENSGT00950000183005.a.a ENSGT00940000154102.b.a.a ENSGT00940000157877.b.h ENSGT00940000155317.a.a ##23 ENSGT01030000234648.a.b.a.b.a.b ENSGT00390000007696 ENSGT00390000006665.a ENSGT00940000157842.b ENSGT00940000156468.f ENSGT00940000156703.e.a ENSGT00940000154861.n.a ENSGT00530000063548.A ENSGT00940000158384.d ENSGT00940000181580 ENSGT00940000155071.C ENSGT00940000177280 ENSGT00940000162663 ENSGT00940000157154.d ENSGT01050000244882.b.c.a.a Percomorphaceae_C ANCESTRAL SPECIES 1 ENSGT00940000166196 ENSGT00940000164702.b ENSGT01030000234549.a.a.a.a.a.a.c.a.b ENSGT01030000234549.a.a.a.a.a.a.c.a.a ENSGT00940000161383.d.a ENSGT01030000234549.a.a.a.a.a.a.c.b ENSGT01030000234549.a.a.a.a.a.a.d ENSGT01030000234549.a.a.a.b ENSGT00940000155877 ENSGT00940000157503.i.b ENSGT00940000181969 ENSGT00940000166392 ENSGT00950000183005.a.a ENSGT00940000154102.b.a.a ENSGT00940000157877.b.h ENSGT00940000155317.a.a ##23 ENSGT01030000234648.a.b.a.b.a.b ENSGT00390000007696 ENSGT00390000006665.a ENSGT00940000157842.b ENSGT00940000156468.f ENSGT00940000156703.e.a ENSGT00940000154861.n.a ENSGT00530000063548.A ENSGT00940000158384.d ENSGT00940000177280 ENSGT00940000155071.C ENSGT00940000162663 ENSGT00940000157154.d ENSGT01050000244882.b.c.a.a ENSGT00390000009678 Percomorphaceae_D DUPLICATION Percomorphaceae_D ANCESTRAL SPECIES 4 ENSGT00940000156963.a.b ENSGT00940000155317.a.a.m ##23 ENSGT00390000002062 ENSGT00940000156805 ENSGT01030000234648.a.b.a.b.a.a ENSGT00390000012692 ENSGT00940000157877.b.g ENSGT01020000230394.e.a.a.b.a.b ENSGT00950000182955.a.b.a ENSGT00940000175919 ENSGT00940000167532 ENSGT00940000160502 ENSGT00530000063687.b.b.b ENSGT00390000003348 ENSGT00940000159438 ENSGT00940000157503.j ENSGT00940000181187 Carangaria ANCESTRAL SPECIES 2 ENSGT00940000156963.a.b ENSGT00940000155317.a.a.m ##23 ENSGT00390000002062 ENSGT00940000156805 ENSGT01030000234648.a.b.a.b.a.a ENSGT00390000012692 ENSGT00940000157877.b.g ENSGT01020000230394.e.a.a.b.a.b ENSGT00950000182955.a.b.a ENSGT00940000175919 ENSGT00940000167532 ENSGT00940000160502 ENSGT00530000063687.b.b.b ENSGT00390000003348 ENSGT00940000159438 ENSGT00940000157503.j ENSGT00940000181187 Carangaria_A ANCESTRAL SPECIES 1 ENSGT00940000156963.a.b ENSGT00940000155317.a.a.m ##23 ENSGT00390000002062 ENSGT00940000156805 ENSGT01030000234648.a.b.a.b.a.a ENSGT00390000012692 ENSGT00940000157877.b.g ENSGT01020000230394.e.a.a.b.a.b ENSGT00950000182955.a.b.a ENSGT00940000175919 ENSGT00940000167532 ENSGT00940000160502 ENSGT00530000063687.b.b.b ENSGT00390000003348 ENSGT00940000159438 ENSGT00940000157503.j ENSGT00940000181187 Seriola ANCESTRAL SPECIES 75 ENSGT00940000156963.a.b ENSGT00940000155317.a.a.m ##23 ENSGT00390000002062 ENSGT00940000156805 ENSGT01030000234648.a.b.a.b.a.a ENSGT00390000012692 ENSGT00940000157877.b.g ENSGT01020000230394.e.a.a.b.a.b ENSGT00950000182955.a.b.a ENSGT00940000175919 ENSGT00940000167532 ENSGT00940000160502 ENSGT00530000063687.b.b.b ENSGT00390000003348 ENSGT00940000159438 ENSGT00940000157503.j ENSGT00940000181187 Yellowtail amberjack MODERN SPECIES 2724 CDK16 (ENSSLDG00000005240) COMT (ENSSLDG00000005333) ##23 abt1 (ENSSLDG00000005513) rad51c (ENSSLDG00000005524) GRM6 (ENSSLDG00000005543) tsr2 (ENSSLDG00000005598) SRPK3 (ENSSLDG00000005703) PLXNB3 (ENSSLDG00000005974) abcd1 (ENSSLDG00000006205) ENSSLDG00000006250 ENSSLDG00000006262 ENSSLDG00000006286 mecp2 (ENSSLDG00000006333) ENSSLDG00000006346 ENSSLDG00000006375 ENSSLDG00000006396 TFE3 (ENSSLDG00000006428) Greater amberjack MODERN SPECIES 150 CDK16 (ENSSDUG00000019268) COMT (ENSSDUG00000019301) ##23 abt1 (ENSSDUG00000019357) rad51c (ENSSDUG00000019366) GRM6 (ENSSDUG00000019376) tsr2 (ENSSDUG00000019445) SRPK3 (ENSSDUG00000019453) ENSSDUG00000019492 PLXNB3 (ENSSDUG00000019515) abcd1 (ENSSDUG00000019696) ENSSDUG00000019722 ENSSDUG00000019763 ENSSDUG00000019781 mecp2 (ENSSDUG00000019809) ENSSDUG00000019824 FGD1 (ENSSDUG00000019849) TFE3 (ENSSDUG00000019935) Percomorphaceae_D ANCESTRAL SPECIES 3 ENSGT00530000063631.b.n.a ENSGT01090000260003.a.b.b.a.a.b.b.a.l ENSGT00940000166313.a ENSGT00940000166196 ENSGT00940000164702.b ENSGT01030000234549.a.a.a.a.a.a.c.a.b ENSGT01030000234549.a.a.a.a.a.a.c.a.a ENSGT01030000234549.a.a.a.a.a.a.d ENSGT01030000234549.a.a.a.b ENSGT00940000155877 ENSGT00940000157503.i.b ENSGT00940000166392 ENSGT00950000183005.a.a ENSGT00940000154102.b.a.a ENSGT00940000157877.b.h ENSGT00940000155317.a.a.n ##23 ENSGT01030000234648.a.b.a.b.a.b ENSGT00390000007696 ENSGT00390000006665.a ENSGT00940000157842.b ENSGT00940000156468.f ENSGT00940000156703.e.a ENSGT00940000154861.n.a ENSGT00530000063548.A ENSGT00940000158384.d ENSGT00940000181580 ENSGT00940000155071.C ENSGT00940000162663 ENSGT00940000157154.d ENSGT01050000244882.b.c.a.a ENSGT00390000009678 Anabantaria ANCESTRAL SPECIES ENSGT00530000063631.b.n.a ENSGT01090000260003.a.b.b.a.a.b.b.a.l ENSGT00940000166313.a ENSGT00940000166196 ENSGT00940000164702.b ENSGT01030000234549.a.a.a.a.a.a.c.a.b ENSGT01030000234549.a.a.a.a.a.a.c.a.a ENSGT01030000234549.a.a.a.a.a.a.d ENSGT01030000234549.a.a.a.b ENSGT00940000155877 ENSGT00940000157503.i.b ENSGT00940000166392 ENSGT00950000183005.a.a ENSGT00940000154102.b.a.a ENSGT00940000157877.b.h ENSGT00940000155317.a.a.n ##23 ENSGT01030000234648.a.b.a.b.a.b ENSGT00390000007696 ENSGT00390000006665.a ENSGT00940000157842.b ENSGT00940000156468.f ENSGT00940000156703.e.a ENSGT00940000154861.n.a ENSGT00530000063548.A ENSGT00940000158384.d ENSGT00940000181580 ENSGT00940000155071.C ENSGT00940000162663 ENSGT00940000157154.d ENSGT01050000244882.b.c.a.a ENSGT00390000009678 Zig-zag eel MODERN SPECIES 19 ENSMAMG00000024557 gata1a (ENSMAMG00000021092) si:dkey-13a21.4 (ENSMAMG00000021095) hcfc1a (ENSMAMG00000021100) opn1sw2 (ENSMAMG00000026245) opn1sw2 (ENSMAMG00000021134) ENSMAMG00000022442 ENSMAMG00000022455 gnl3l (ENSMAMG00000023332) tfe3b (ENSMAMG00000023336) ENSMAMG00000023337 cxxc1b (ENSMAMG00000023339) ENSMAMG00000027411 ccdc120b (ENSMAMG00000024568) ENSMAMG00000023345 comtb (ENSMAMG00000023349) ##23 grm6b (ENSMAMG00000023356) mon1a (ENSMAMG00000023358) traip (ENSMAMG00000023357) ENSMAMG00000023360 camkvb (ENSMAMG00000023367) ENSMAMG00000023374 arl8bb (ENSMAMG00000027917) ENSMAMG00000023382 ENSMAMG00000023384 bhlhe40 (ENSMAMG00000023386) ENSMAMG00000024536 ITPR1 (ENSMAMG00000023390) setmar (ENSMAMG00000023395) lrrn1 (ENSMAMG00000023397) ENSMAMG00000023400 Anabantoidei ANCESTRAL SPECIES 1 ENSGT00940000164411 ENSGT00530000063631.b.n.a ENSGT01090000260003.a.b.b.a.a.b.b.a.l ENSGT00940000166313.a ENSGT00940000166196 ENSGT00940000164702.b ENSGT01030000234549.a.a.a.a.a.a.c.a.a ENSGT01030000234549.a.a.a.a.a.a.d ENSGT01030000234549.a.a.a.b ENSGT00940000155877 ENSGT00940000157503.i.b ENSGT00940000166392 ENSGT00950000183005.a.a ENSGT00940000154102.b.a.a ENSGT00940000157877.b.h ENSGT00940000155317.a.a.n ##23 ENSGT01030000234648.a.b.a.b.a.b ENSGT00390000007696 ENSGT00390000006665.a ENSGT00940000157842.b ENSGT00940000156468.f ENSGT00940000156703.e.a ENSGT00940000154861.n.a ENSGT00530000063548.A ENSGT00940000158384.d ENSGT00940000155071.C ENSGT00940000162663 ENSGT00940000157154.d ENSGT01050000244882.b.c.a.a ENSGT00390000009678 ENSGT00390000008631.a.o.a Climbing perch MODERN SPECIES 18 adnpa (ENSATEG00000015001) ENSATEG00000014989 gata1a (ENSATEG00000014966) si:dkey-13a21.4 (ENSATEG00000014958) hcfc1a (ENSATEG00000014798) opn1sw2 (ENSATEG00000014765) opn1sw2 (ENSATEG00000014431) ENSATEG00000011811 ENSATEG00000009817 gnl3l (ENSATEG00000009762) tfe3b (ENSATEG00000009661) cxxc1b (ENSATEG00000009642) mbd1b (ENSATEG00000009608) ccdc120b (ENSATEG00000009583) ENSATEG00000009561 comtb (ENSATEG00000009551) ##23 grm6b (ENSATEG00000009522) traip (ENSATEG00000009440) mon1a (ENSATEG00000009424) ENSATEG00000009407 camkvb (ENSATEG00000009278) ENSATEG00000009213 arl8bb (ENSATEG00000028465) ENSATEG00000009196 bhlhe40 (ENSATEG00000009176) ITPR1 (ENSATEG00000009014) setmar (ENSATEG00000008998) lrrn1 (ENSATEG00000008988) ENSATEG00000008955 trnt1 (ENSATEG00000008928) arl6ip5a (ENSATEG00000008916) Siamese fighting fish MODERN SPECIES 16 ENSBSLG00000023864 adnpa (ENSBSLG00000023899) BCL2L1 (ENSBSLG00000023910) gata1a (ENSBSLG00000023916) si:dkey-13a21.4 (ENSBSLG00000007864) hcfc1a (ENSBSLG00000007920) opn1sw2 (ENSBSLG00000008108) opn1sw2 (ENSBSLG00000008155) opn1lw1 (ENSBSLG00000008207) gnl3l (ENSBSLG00000008417) tfe3b (ENSBSLG00000008528) cxxc1b (ENSBSLG00000008835) mbd1b (ENSBSLG00000009328) ccdc120b (ENSBSLG00000009387) SRPK3 (ENSBSLG00000009779) comtb (ENSBSLG00000010327) ##23 grm6b (ENSBSLG00000010337) traip (ENSBSLG00000010544) mon1a (ENSBSLG00000010555) ENSBSLG00000010560 camkvb (ENSBSLG00000010678) SEMA3F (ENSBSLG00000010913) arl8bb (ENSBSLG00000013136) NAAA (ENSBSLG00000013286) bhlhe40 (ENSBSLG00000013372) ITPR1 (ENSBSLG00000013775) setmar (ENSBSLG00000020708) lrrn1 (ENSBSLG00000020709) ENSBSLG00000020712 trnt1 (ENSBSLG00000020713) arl6ip5a (ENSBSLG00000020715) Carangaria ANCESTRAL SPECIES 3 ENSGT00530000063631.b.n.a ENSGT01090000260003.a.b.b.a.a.b.b.a.l ENSGT00940000166313.a ENSGT00940000166196 ENSGT00940000164702.b ENSGT01030000234549.a.a.a.a.a.a.c.a.b ENSGT01030000234549.a.a.a.a.a.a.c.a.a ENSGT01030000234549.a.a.a.a.a.a.d ENSGT01030000234549.a.a.a.b ENSGT00940000155877 ENSGT00940000157503.i.b ENSGT00940000166392 ENSGT00950000183005.a.a ENSGT00940000154102.b.a.a ENSGT00940000157877.b.h ENSGT00940000155317.a.a.n ##23 ENSGT01030000234648.a.b.a.b.a.b ENSGT00390000007696 ENSGT00390000006665.a ENSGT00940000157842.b ENSGT00940000156468.f ENSGT00940000156703.e.a ENSGT00940000154861.n.a ENSGT00530000063548.A ENSGT00940000158384.d ENSGT00940000155071.C ENSGT00940000162663 ENSGT00940000157154.d ENSGT01050000244882.b.c.a.a ENSGT00390000009678 ENSGT00390000008631.a.o.a Carangaria_A ANCESTRAL SPECIES 7 ENSGT00530000063631.b.n.a ENSGT01090000260003.a.b.b.a.a.b.b.a.l ENSGT00940000166313.a ENSGT00940000166196 ENSGT00940000164702.b ENSGT01030000234549.a.a.a.a.a.a.c.a.b ENSGT01030000234549.a.a.a.a.a.a.c.a.a ENSGT01030000234549.a.a.a.a.a.a.d ENSGT01030000234549.a.a.a.b ENSGT00940000155877 ENSGT00940000157503.i.b ENSGT00940000166392 ENSGT00950000183005.a.a ENSGT00940000154102.b.a.a ENSGT00940000157877.b.h ENSGT00940000155317.a.a.n ##23 ENSGT01030000234648.a.b.a.b.a.b ENSGT00390000007696 ENSGT00390000006665.a ENSGT00940000157842.b ENSGT00940000156468.f ENSGT00940000156703.e.a ENSGT00940000154861.n.a ENSGT00530000063548.A ENSGT00940000158384.d ENSGT00940000155071.C ENSGT00940000162663 ENSGT00940000157154.d ENSGT01050000244882.b.c.a.a ENSGT00390000009678 ENSGT00390000008631.a.o.a Seriola ANCESTRAL SPECIES 10 ENSGT00530000063631.b.n.a ENSGT01090000260003.a.b.b.a.a.b.b.a.l ENSGT00940000166313.a ENSGT00940000166196 ENSGT00940000164702.b ENSGT01030000234549.a.a.a.a.a.a.c.a.b ENSGT01030000234549.a.a.a.a.a.a.c.a.a ENSGT01030000234549.a.a.a.a.a.a.d ENSGT01030000234549.a.a.a.b ENSGT00940000155877 ENSGT00940000157503.i.b ENSGT00940000166392 ENSGT00950000183005.a.a ENSGT00940000154102.b.a.a ENSGT00940000157877.b.h ENSGT00940000155317.a.a.n ##23 ENSGT01030000234648.a.b.a.b.a.b ENSGT00390000007696 ENSGT00390000006665.a ENSGT00940000157842.b ENSGT00940000156468.f ENSGT00940000156703.e.a ENSGT00940000154861.n.a ENSGT00530000063548.A ENSGT00940000158384.d ENSGT00940000155071.C ENSGT00940000162663 ENSGT00940000157154.d ENSGT01050000244882.b.c.a.a ENSGT00390000009678 ENSGT00390000008631.a.o.a Yellowtail amberjack DUPLICATION Yellowtail amberjack MODERN SPECIES 2037 adnpa (ENSSLDG00000011550) BCL2L1 (ENSSLDG00000011562) gata1a (ENSSLDG00000011572) si:dkey-13a21.4 (ENSSLDG00000011597) hcfc1a (ENSSLDG00000011619) opn1sw2 (ENSSLDG00000011730) opn1sw2 (ENSSLDG00000012051) opn1sw2 (ENSSLDG00000012230) opn1lw1 (ENSSLDG00000012258) gnl3l (ENSSLDG00000012278) tfe3b (ENSSLDG00000012336) cxxc1b (ENSSLDG00000012368) mbd1b (ENSSLDG00000012422) ccdc120b (ENSSLDG00000012502) SRPK3 (ENSSLDG00000012560) comtb (ENSSLDG00000012626) ##23 Yellowtail amberjack MODERN SPECIES 2631 ENSSLDG00000009983 comtb (ENSSLDG00000009969) ##23 grm6b (ENSSLDG00000009921) traip (ENSSLDG00000009865) mon1a (ENSSLDG00000009834) MST1R (ENSSLDG00000009798) camkvb (ENSSLDG00000009673) SEMA3F (ENSSLDG00000009613) arl8bb (ENSSLDG00000009588) NAAA (ENSSLDG00000009564) bhlhe40 (ENSSLDG00000009545) ITPR1 (ENSSLDG00000009407) setmar (ENSSLDG00000009370) lrrn1 (ENSSLDG00000009364) ENSSLDG00000009355 trnt1 (ENSSLDG00000009325) arl6ip5a (ENSSLDG00000009316) Greater amberjack MODERN SPECIES 37 adnpa (ENSSDUG00000019791) BCL2L1 (ENSSDUG00000019783) gata1a (ENSSDUG00000019759) si:dkey-13a21.4 (ENSSDUG00000019738) hcfc1a (ENSSDUG00000019688) opn1sw2 (ENSSDUG00000017946) opn1sw2 (ENSSDUG00000017835) opn1sw2 (ENSSDUG00000015046) opn1lw1 (ENSSDUG00000013219) gnl3l (ENSSDUG00000013117) tfe3b (ENSSDUG00000013054) cxxc1b (ENSSDUG00000013022) mbd1b (ENSSDUG00000012996) ccdc120b (ENSSDUG00000012978) SRPK3 (ENSSDUG00000012949) comtb (ENSSDUG00000012936) ##23 grm6b (ENSSDUG00000012908) traip (ENSSDUG00000012887) mon1a (ENSSDUG00000012873) MST1R (ENSSDUG00000012803) camkvb (ENSSDUG00000012707) SEMA3F (ENSSDUG00000012565) ENSSDUG00000012547 arl8bb (ENSSDUG00000012529) NAAA (ENSSDUG00000012503) bhlhe40 (ENSSDUG00000012494) ITPR1 (ENSSDUG00000012375) setmar (ENSSDUG00000012353) lrrn1 (ENSSDUG00000012348) ENSSDUG00000012333 trnt1 (ENSSDUG00000012320) Barramundi perch MODERN SPECIES 93 ENSLCAG00010019393 adnpa (ENSLCAG00010019391) BCL2L1 (ENSLCAG00010019389) gata1a (ENSLCAG00010019384) si:dkey-13a21.4 (ENSLCAG00010019380) opn1sw2 (ENSLCAG00010019363) opn1sw2 (ENSLCAG00010019332) opn1sw2 (ENSLCAG00010019314) opn1lw1 (ENSLCAG00010019185) gnl3l (ENSLCAG00010019117) tfe3b (ENSLCAG00010018845) cxxc1b (ENSLCAG00010018774) mbd1b (ENSLCAG00010018764) ccdc120b (ENSLCAG00010018757) SRPK3 (ENSLCAG00010018737) comtb (ENSLCAG00010018721) ##23 grm6b (ENSLCAG00010018700) traip (ENSLCAG00010018680) mon1a (ENSLCAG00010018669) ENSLCAG00010018663 camkvb (ENSLCAG00010018655) SEMA3F (ENSLCAG00010018634) arl8bb (ENSLCAG00010018615) NAAA (ENSLCAG00010018609) bhlhe40 (ENSLCAG00010018605) slc43a1a (ENSLCAG00010018575) med19a (ENSLCAG00010018564) si:dkey-6i22.5 (ENSLCAG00010018560) tmx2a (ENSLCAG00010018557) zdhhc5b (ENSLCAG00010018554) clp1 (ENSLCAG00010018551) Pleuronectoidei ANCESTRAL SPECIES 4 ENSGT00940000164411 ENSGT00530000063631.b.n.a ENSGT01090000260003.a.b.b.a.a.b.b.a.l ENSGT00940000166313.a ENSGT00940000166196 ENSGT00940000164702.b ENSGT01030000234549.a.a.a.a.a.a.c.b ENSGT01030000234549.a.a.a.a.a.a.d ENSGT01030000234549.a.a.a.b ENSGT00940000155877 ENSGT00940000157503.i.b ENSGT00940000166392 ENSGT00950000183005.a.a ENSGT00940000154102.b.a.a ENSGT00940000157877.b.h ENSGT00940000155317.a.a.n ##23 ENSGT01030000234648.a.b.a.b.a.b ENSGT00390000007696 ENSGT00390000006665.a ENSGT00940000157842.b ENSGT00940000156468.f ENSGT00940000156703.e.a ENSGT00940000154861.n.a ENSGT00530000063548.A ENSGT00940000158384.d ENSGT00940000162663 ENSGT00940000157154.d ENSGT01050000244882.b.c.a.a ENSGT00390000009678 ENSGT00390000008631.a.o.a ENSGT01020000230354.A.a.a Turbot MODERN SPECIES 18 ENSSMAG00000013903 ENSSMAG00000013917 ENSSMAG00000028451 gata1a (ENSSMAG00000013930) si:dkey-13a21.4 (ENSSMAG00000013945) hcfc1a (ENSSMAG00000013953) opn1sw2 (ENSSMAG00000014006) opn1sw2 (ENSSMAG00000014457) opn1lw1 (ENSSMAG00000014476) gnl3l (ENSSMAG00000014518) tfe3b (ENSSMAG00000014563) cxxc1b (ENSSMAG00000014604) mbd1b (ENSSMAG00000014640) ccdc120b (ENSSMAG00000014764) ENSSMAG00000014783 comtb (ENSSMAG00000014805) ##23 grm6b (ENSSMAG00000014847) traip (ENSSMAG00000014911) mon1a (ENSSMAG00000014977) ENSSMAG00000014995 camkvb (ENSSMAG00000015020) ENSSMAG00000015037 arl8bb (ENSSMAG00000036408) ENSSMAG00000022883 ENSSMAG00000015251 bhlhe40 (ENSSMAG00000026563) setmar (ENSSMAG00000015405) lrrn1 (ENSSMAG00000015413) ENSSMAG00000026170 trnt1 (ENSSMAG00000015432) arl6ip5a (ENSSMAG00000015475) Eupercaria ANCESTRAL SPECIES ENSGT00940000164702.b ENSGT01030000234549.a.a.a.a.a.a.c.a.b ENSGT01030000234549.a.a.a.a.a.a.c.a.a ENSGT00940000166196 ENSGT00940000161383.d.a ENSGT01030000234549.a.a.a.a.a.a.c.b ENSGT01030000234549.a.a.a.a.a.a.d ENSGT01030000234549.a.a.a.b ENSGT00940000155877 ENSGT00940000157503.i.b ENSGT00940000181969 ENSGT00940000166392 ENSGT00950000183005.a.a ENSGT00940000154102.b.a.a ENSGT00940000157877.b.h ENSGT00940000155317.a.a ##23 ENSGT01030000234648.a.b.a.b.a.b ENSGT00390000007696 ENSGT00390000006665.a ENSGT00940000157842.b ENSGT00940000156468.f ENSGT00940000156703.e.a ENSGT00940000154861.n.a ENSGT00530000063548.A ENSGT00940000158384.d ENSGT00940000177280 ENSGT00940000155071.C ENSGT00940000162663 ENSGT00940000157154.d ENSGT01050000244882.b.c.a.a ENSGT00390000009678 Tetraodontidae ANCESTRAL SPECIES 1 ENSGT00940000158405 ENSGT00940000160486.d ENSGT00940000164411 ENSGT00530000063631.b.n.a ENSGT01090000260003.a.b.b.a.a.b.b.a.l.a ENSGT00940000166313.a ENSGT00940000164702.b ENSGT01030000234549.a.a.a.a.a.a.d ENSGT01030000234549.a.a.a.b ENSGT00940000155877 ENSGT00940000157503.i.b ENSGT00940000166392 ENSGT00950000183005.a.a ENSGT00940000154102.b.a.a ENSGT00940000157877.b.h ENSGT00940000155317.a.a ##23 ENSGT01030000234648.a.b.a.b.a.b ENSGT00390000007696 ENSGT00390000006665.a ENSGT00940000157842.b ENSGT00940000156468.f ENSGT00940000156703.e.a ENSGT00940000154861.n.a ENSGT00530000063548.A ENSGT00940000158384.d ENSGT00940000155071.C ENSGT00940000162663 ENSGT00940000157154.d ENSGT00390000011581.c ENSGT00940000156091.b ENSGT00390000002635 Fugu MODERN SPECIES 10 MAFB (ENSTRUG00000032052) ENSTRUG00000012597 adnpa (ENSTRUG00000033492) ENSTRUG00000030489 BCL2L1 (ENSTRUG00000012724) gata1a (ENSTRUG00000012781) hcfc1a (ENSTRUG00000012807) opn1sw2 (ENSTRUG00000013002) opn1lw1 (ENSTRUG00000013052) gnl3l (ENSTRUG00000013131) tfe3b (ENSTRUG00000013198) cxxc1b (ENSTRUG00000013293) mbd1b (ENSTRUG00000013422) ccdc120b (ENSTRUG00000013456) SRPK3 (ENSTRUG00000029636) comtb (ENSTRUG00000013666) ##23 grm6b (ENSTRUG00000013670) traip (ENSTRUG00000013872) mon1a (ENSTRUG00000013941) ENSTRUG00000013975 camkvb (ENSTRUG00000014152) SEMA3F (ENSTRUG00000014242) arl8bb (ENSTRUG00000011496) NAAA (ENSTRUG00000014493) bhlhe40 (ENSTRUG00000020385) ITPR1 (ENSTRUG00000023819) setmar (ENSTRUG00000021227) lrrn1 (ENSTRUG00000014946) ENSTRUG00000027705 ift52 (ENSTRUG00000014953) mybl2b (ENSTRUG00000021040) Tetraodon MODERN SPECIES 2 fam83d (ENSTNIG00000007315) MAFB (ENSTNIG00000007316) ENSTNIG00000000511 adnpa (ENSTNIG00000007317) BCL2L1 (ENSTNIG00000007318) gata1a (ENSTNIG00000007319) hcfc1a (ENSTNIG00000007320) opn1sw2 (ENSTNIG00000007321) opn1lw1 (ENSTNIG00000007322) gnl3l (ENSTNIG00000007323) tfe3b (ENSTNIG00000007324) cxxc1b (ENSTNIG00000007325) ENSTNIG00000007326 ccdc120b (ENSTNIG00000007327) SRPK3 (ENSTNIG00000007328) comtb (ENSTNIG00000007329) ##23 grm6b (ENSTNIG00000007330) traip (ENSTNIG00000007331) mon1a (ENSTNIG00000007332) MST1R (ENSTNIG00000007333) camkvb (ENSTNIG00000007334) SEMA3F (ENSTNIG00000007335) arl8bb (ENSTNIG00000007336) NAAA (ENSTNIG00000007337) bhlhe40 (ENSTNIG00000007338) ITPR1 (ENSTNIG00000007339) lrrn1 (ENSTNIG00000007340) mybl2b (ENSTNIG00000007341) rpn2 (ENSTNIG00000007342) ENSTNIG00000007343 cdk5rap1 (ENSTNIG00000007344) Eupecaria_A ANCESTRAL SPECIES ENSGT00940000164702.b ENSGT01030000234549.a.a.a.a.a.a.c.a.b ENSGT01030000234549.a.a.a.a.a.a.c.a.a ENSGT00940000166196 ENSGT00940000161383.d.a ENSGT01030000234549.a.a.a.a.a.a.c.b ENSGT01030000234549.a.a.a.a.a.a.d ENSGT01030000234549.a.a.a.b ENSGT00940000155877 ENSGT00940000157503.i.b ENSGT00940000181969 ENSGT00940000166392 ENSGT00950000183005.a.a ENSGT00940000154102.b.a.a ENSGT00940000157877.b.h ENSGT00940000155317.a.a ##23 ENSGT01030000234648.a.b.a.b.a.b ENSGT00390000007696 ENSGT00390000006665.a ENSGT00940000157842.b ENSGT00940000156468.f ENSGT00940000156703.e.a ENSGT00940000154861.n.a ENSGT00530000063548.A ENSGT00940000158384.d ENSGT00940000177280 ENSGT00940000155071.C ENSGT00940000162663 ENSGT00940000157154.d ENSGT01050000244882.b.c.a.a ENSGT00390000009678 Ballan wrasse MODERN SPECIES 61 MAFB (ENSLBEG00000017971) ENSLBEG00000017986 adnpa (ENSLBEG00000018017) BCL2L1 (ENSLBEG00000018039) gata1a (ENSLBEG00000018106) hcfc1a (ENSLBEG00000018128) si:dkey-13a21.4 (ENSLBEG00000018180) opn1sw2 (ENSLBEG00000018213) ENSLBEG00000018236 gnl3l (ENSLBEG00000018256) tfe3b (ENSLBEG00000018288) cxxc1b (ENSLBEG00000018337) ENSLBEG00000018506 ccdc120b (ENSLBEG00000018545) SRPK3 (ENSLBEG00000018572) comtb (ENSLBEG00000018603) ##23 grm6b (ENSLBEG00000018623) traip (ENSLBEG00000018662) mon1a (ENSLBEG00000018702) MST1R (ENSLBEG00000018750) camkvb (ENSLBEG00000018889) SEMA3F (ENSLBEG00000018957) arl8bb (ENSLBEG00000019016) NAAA (ENSLBEG00000019157) bhlhe40 (ENSLBEG00000019219) ITPR1 (ENSLBEG00000019256) setmar (ENSLBEG00000019413) lrrn1 (ENSLBEG00000019424) ENSLBEG00000019439 trnt1 (ENSLBEG00000019457) arl6ip5a (ENSLBEG00000019488) Eupecaria_B ANCESTRAL SPECIES 2 ENSGT00530000063631.b.n.a ENSGT01090000260003.a.b.b.a.a.b.b.a.l ENSGT00940000166313.a ENSGT00940000166196 ENSGT00940000164702.b ENSGT01030000234549.a.a.a.a.a.a.c.a.b ENSGT01030000234549.a.a.a.a.a.a.d ENSGT01030000234549.a.a.a.b ENSGT00940000155877 ENSGT00940000157503.i.b ENSGT00940000181969 ENSGT00940000166392 ENSGT00950000183005.a.a ENSGT00940000154102.b.a.a ENSGT00940000157877.b.h ENSGT00940000155317.a.a ##23 ENSGT01030000234648.a.b.a.b.a.b ENSGT00390000007696 ENSGT00390000006665.a ENSGT00940000157842.b ENSGT00940000156468.f ENSGT00940000156703.e.a ENSGT00940000154861.n.a ENSGT00530000063548.A ENSGT00940000158384.d ENSGT00940000177280 ENSGT00940000155071.C ENSGT00940000162663 ENSGT00940000157154.d ENSGT01050000244882.b.c.a.a ENSGT00390000009678 Perciformes ANCESTRAL SPECIES ENSGT01090000260003.a.b.b.a.a.b.b.a.l ENSGT00940000166313.a ENSGT00940000166196 ENSGT00940000164702.b ENSGT01030000234549.a.a.a.a.a.a.c.a.b ENSGT01030000234549.a.a.a.a.a.a.c.b ENSGT01030000234549.a.a.a.a.a.a.d ENSGT01030000234549.a.a.a.b ENSGT00940000155877 ENSGT00940000157503.i.b ENSGT00940000181969 ENSGT00940000166392 ENSGT00950000183005.a.a ENSGT00940000154102.b.a.a ENSGT00940000157877.b.h ENSGT00940000155317.a.a ##23 ENSGT01030000234648.a.b.a.b.a.b ENSGT00390000007696 ENSGT00390000006665.a ENSGT00940000157842.b ENSGT00940000156468.f ENSGT00940000156703.e.a ENSGT00940000154861.n.a ENSGT00530000063548.A ENSGT00940000158384.d ENSGT00940000177280 ENSGT00940000155071.C ENSGT00940000162663 ENSGT00940000157154.d ENSGT01050000244882.b.c.a.a ENSGT00390000009678 Perciformes_a ANCESTRAL SPECIES 27 ENSGT00950000183005.a.a ENSGT00940000154102.b.a.a ENSGT00940000157877.b.h ENSGT00940000155317.a.a ##23 ENSGT01030000234648.a.b.a.b.a.b ENSGT00390000007696 ENSGT00390000006665.a ENSGT00940000157842.b ENSGT00940000156468.f ENSGT00940000156703.e.a ENSGT00940000154861.n.a ENSGT00530000063548.A ENSGT00940000158384.d ENSGT00940000177280 ENSGT00940000155071.C ENSGT00940000162663 ENSGT00940000157154.d ENSGT01050000244882.b.c.a.a ENSGT00390000009678 Pike perch MODERN SPECIES 11 BCL2L1 (ENSSLUG00000021825) gata1a (ENSSLUG00000021830) si:dkey-13a21.4 (ENSSLUG00000021834) hcfc1a (ENSSLUG00000021854) opn1sw2 (ENSSLUG00000021888) ENSSLUG00000021893 ENSSLUG00000021896 ENSSLUG00000021899 ENSSLUG00000021917 gnl3l (ENSSLUG00000021972) tfe3b (ENSSLUG00000022004) CXXC1 (ENSSLUG00000022049) mbd1b (ENSSLUG00000022140) ccdc120b (ENSSLUG00000022153) SRPK3 (ENSSLUG00000022192) comtb (ENSSLUG00000022361) ##23 grm6b (ENSSLUG00000022374) traip (ENSSLUG00000022387) mon1a (ENSSLUG00000022403) ENSSLUG00000022410 camkvb (ENSSLUG00000005084) SEMA3F (ENSSLUG00000005295) arl8bb (ENSSLUG00000007380) NAAA (ENSSLUG00000007391) bhlhe40 (ENSSLUG00000007397) ITPR1 (ENSSLUG00000007574) setmar (ENSSLUG00000010262) lrrn1 (ENSSLUG00000010263) ENSSLUG00000010265 trnt1 (ENSSLUG00000010274) arl6ip5a (ENSSLUG00000010291) Channel bull blenny MODERN SPECIES 19 adnpa (ENSCGOG00000001427) BCL2L1 (ENSCGOG00000001425) gata1a (ENSCGOG00000001418) si:dkey-13a21.4 (ENSCGOG00000001417) hcfc1a (ENSCGOG00000001124) opn1sw2 (ENSCGOG00000001101) opn1sw2 (ENSCGOG00000001089) opn1lw1 (ENSCGOG00000001051) gnl3l (ENSCGOG00000001042) tfe3b (ENSCGOG00000001023) cxxc1a (ENSCGOG00000000995) ENSCGOG00000000992 ENSCGOG00000000965 ccdc120b (ENSCGOG00000000963) SRPK3 (ENSCGOG00000000936) comtb (ENSCGOG00000000932) ##23 grm6b (ENSCGOG00000000769) traip (ENSCGOG00000000727) mon1a (ENSCGOG00000000725) ENSCGOG00000000720 camkvb (ENSCGOG00000000660) SEMA3F (ENSCGOG00000000535) arl8bb (ENSCGOG00000023683) NAAA (ENSCGOG00000023679) bhlhe40 (ENSCGOG00000023677) ENSCGOG00000023674 ITPR1 (ENSCGOG00000021328) setmar (ENSCGOG00000021226) lrrn1 (ENSCGOG00000021224) ENSCGOG00000021223 trnt1 (ENSCGOG00000021203) Cottioidei ANCESTRAL SPECIES ENSGT01090000260003.a.b.b.a.a.b.b.a.l ENSGT00940000166313.a ENSGT00940000166196 ENSGT00940000161383.d.a ENSGT00940000164702.b ENSGT01030000234549.a.a.a.a.a.a.c.b ENSGT01030000234549.a.a.a.a.a.a.d ENSGT01030000234549.a.a.a.b ENSGT00940000155877 ENSGT00940000157503.i.b ENSGT00940000181969 ENSGT00940000166392 ENSGT00950000183005.a.a ENSGT00940000154102.b.a.a ENSGT00940000157877.b.h ENSGT00940000155317.a.a ##23 ENSGT01030000234648.a.b.a.b.a.b ENSGT00390000007696 ENSGT00390000006665.a ENSGT00940000157842.b ENSGT00940000156468.f ENSGT00940000156703.e.a ENSGT00940000154861.n.a ENSGT00530000063548.A ENSGT00940000158384.d ENSGT00940000155071.C ENSGT00940000162663 ENSGT00940000157154.d ENSGT01050000244882.b.c.a.a ENSGT00390000009678 ENSGT00390000008631.a.o.a Stickleback MODERN SPECIES 17 gnat1 (ENSGACG00000012301) edem1 (ENSGACG00000012289) arl8ba (ENSGACG00000012267) ENSGACG00000012265 ddi2 (ENSGACG00000012259) cplane2 (ENSGACG00000012256) epha2a (ENSGACG00000012225) H6PD (ENSGACG00000012197) cenps (ENSGACG00000012180) tardbpb (ENSGACG00000012164) gnb1b (ENSGACG00000012145) cxxc1b (ENSGACG00000012117) ENSGACG00000012106 ccdc120b (ENSGACG00000012102) SRPK3 (ENSGACG00000012098) comtb (ENSGACG00000012090) ##23 grm6b (ENSGACG00000012070) traip (ENSGACG00000012044) mon1a (ENSGACG00000012037) ENSGACG00000012007 camkvb (ENSGACG00000011998) SEMA3F (ENSGACG00000011989) arl8bb (ENSGACG00000011972) NAAA (ENSGACG00000011964) ENSGACG00000011962 bhlhe40 (ENSGACG00000011940) ITPR1 (ENSGACG00000011921) setmar (ENSGACG00000011919) lrrn1 (ENSGACG00000011915) trnt1 (ENSGACG00000011903) arl6ip5a (ENSGACG00000011898) Lumpfish MODERN SPECIES 20 gata1a (ENSCLMG00005013105) si:dkey-13a21.4 (ENSCLMG00005013104) HCFC1 (ENSCLMG00005012898) opn1sw2 (ENSCLMG00005012893) opn1sw2 (ENSCLMG00005012891) opn1lw1 (ENSCLMG00005012888) gnl3l (ENSCLMG00005012879) tfe3b (ENSCLMG00005012790) ENSCLMG00005012788 cxxc1b (ENSCLMG00005012498) ENSCLMG00005012492 ccdc120b (ENSCLMG00005012490) ENSCLMG00005012489 ENSCLMG00005012487 SRPK3 (ENSCLMG00005012486) comtb (ENSCLMG00005012436) ##23 grm6b (ENSCLMG00005012426) traip (ENSCLMG00005012422) mon1a (ENSCLMG00005012421) ENSCLMG00005012418 camkvb (ENSCLMG00005012417) SEMA3F (ENSCLMG00005012021) arl8bb (ENSCLMG00005012010) NAAA (ENSCLMG00005012008) ENSCLMG00005012006 tpra1 (ENSCLMG00005011990) ENSCLMG00005011985 PLXNA1 (ENSCLMG00005003300) ENSCLMG00005003064 ENSCLMG00005003038 ENSCLMG00005003023 Eupecaria_C ANCESTRAL SPECIES ENSGT00940000164411 ENSGT00530000063631.b.n.a ENSGT01090000260003.a.b.b.a.a.b.b.a.l ENSGT00940000166313.a ENSGT00940000166196 ENSGT00940000164702.b ENSGT01030000234549.a.a.a.a.a.a.c.a.b ENSGT01030000234549.a.a.a.a.a.a.d ENSGT01030000234549.a.a.a.b ENSGT00940000155877 ENSGT00940000157503.i.b ENSGT00940000166392 ENSGT00950000183005.a.a ENSGT00940000154102.b.a.a ENSGT00940000157877.b.h ENSGT00940000155317.a.a ##23 ENSGT01030000234648.a.b.a.b.a.b ENSGT00390000007696 ENSGT00390000006665.a ENSGT00940000157842.b ENSGT00940000156468.f ENSGT00940000156703.e.a ENSGT00940000154861.n.a ENSGT00530000063548.A ENSGT00940000158384.d ENSGT00940000155071.C ENSGT00940000162663 ENSGT00940000157154.d ENSGT01050000244882.b.c.a.a ENSGT00390000009678 ENSGT00390000008631.a.o.a Gilthead seabream MODERN SPECIES 20 MAFB (ENSSAUG00010014345) ENSSAUG00010014348 BCL2L (ENSSAUG00010014353) gata1a (ENSSAUG00010014355) si:dkey-13a21.4 (ENSSAUG00010014358) hcfc1a (ENSSAUG00010014373) opn1sw2 (ENSSAUG00010014432) opn1sw2 (ENSSAUG00010014437) opn1lw1 (ENSSAUG00010014442) gnl3l (ENSSAUG00010014448) tfe3b (ENSSAUG00010014478) cxxc1b (ENSSAUG00010014492) mbd1b (ENSSAUG00010014539) ccdc120b (ENSSAUG00010014546) SRPK3 (ENSSAUG00010014567) comtb (ENSSAUG00010017170) ##23 grm6b (ENSSAUG00010017188) traip (ENSSAUG00010017395) mon1a (ENSSAUG00010017406) ENSSAUG00010017412 camkvb (ENSSAUG00010017420) SEMA3F (ENSSAUG00010017498) arl8bb (ENSSAUG00010018930) ENSSAUG00010018932 bhlhe40 (ENSSAUG00010018934) ITPR1 (ENSSAUG00010018947) setmar (ENSSAUG00010020167) lrrn1 (ENSSAUG00010020168) ENSSAUG00010020169 trnt1 (ENSSAUG00010020172) arl6ip5a (ENSSAUG00010020174) Eupercaria_incertae_sedis ANCESTRAL SPECIES ENSGT00940000164411 ENSGT00530000063631.b.n.a ENSGT01090000260003.a.b.b.a.a.b.b.a.l ENSGT00940000166313.a ENSGT00940000166196 ENSGT00940000164702.b ENSGT01030000234549.a.a.a.a.a.a.c.a.b ENSGT01030000234549.a.a.a.a.a.a.d ENSGT01030000234549.a.a.a.b ENSGT00940000155877 ENSGT00940000157503.i.b ENSGT00940000166392 ENSGT00950000183005.a.a ENSGT00940000154102.b.a.a ENSGT00940000157877.b.h ENSGT00940000155317.a.a ##23 ENSGT01030000234648.a.b.a.b.a.b ENSGT00390000007696 ENSGT00390000006665.a ENSGT00940000157842.b ENSGT00940000156468.f ENSGT00940000156703.e.a ENSGT00940000154861.n.a ENSGT00530000063548.A ENSGT00940000158384.d ENSGT00940000155071.C ENSGT00940000162663 ENSGT00940000157154.d ENSGT01050000244882.b.c.a.a ENSGT00390000009678 ENSGT00390000008631.a.o.a European seabass MODERN SPECIES 14 ENSDLAG00005033630 ENSDLAG00005028849 ENSDLAG00005028980 ENSDLAG00005033797 ENSDLAG00005018262 ENSDLAG00005034848 ENSDLAG00005014655 ENSDLAG00005035011 ENSDLAG00005027562 ENSDLAG00005021803 ENSDLAG00005034043 ENSDLAG00005013270 ENSDLAG00005014307 ##23 abt1 (ENSDLAG00005014326) ENSDLAG00005027640 ENSDLAG00005014357 ENSDLAG00005014385 tsr2 (ENSDLAG00005029437) SRPK3 (ENSDLAG00005031799) ENSDLAG00005030649 abcd1 (ENSDLAG00005016340) ENSDLAG00005029985 ENSDLAG00005004085 ENSDLAG00005033657 ENSDLAG00005004067 ENSDLAG00005031463 ENSDLAG00005028443 ENSDLAG00005034191 Large yellow croaker MODERN SPECIES ENSLCRG00005000576 pdzrn3b (ENSLCRG00005000512) ppp4r2b (ENSLCRG00005000505) gxylt2 (ENSLCRG00005000503) shq1 (ENSLCRG00005000499) RYBP (ENSLCRG00005000497) prok2 (ENSLCRG00005000494) gpr27 (ENSLCRG00005000493) EIF4E3 (ENSLCRG00005000492) foxp1b (ENSLCRG00005000348) zgc:113054 (ENSLCRG00005000288) mitfa (ENSLCRG00005000244) mbd1b (ENSLCRG00005000194) ccdc120b (ENSLCRG00005000159) SRPK3 (ENSLCRG00005000084) comtb (ENSLCRG00005023001) ##23 grm6b (ENSLCRG00005022971) traip (ENSLCRG00005022970) mon1a (ENSLCRG00005022969) ENSLCRG00005022968 camkvb (ENSLCRG00005022967) SEMA3F (ENSLCRG00005022633) ENSLCRG00005022615 arl8bb (ENSLCRG00005022612) ENSLCRG00005022610 NAAA (ENSLCRG00005022608) bhlhe40 (ENSLCRG00005022605) ITPR1 (ENSLCRG00005022437) setmar (ENSLCRG00005022422) ENSLCRG00005022421 trnt1 (ENSLCRG00005022420) Ovalentaria ANCESTRAL SPECIES 2 ENSGT00940000166313.a ENSGT00940000164702.b ENSGT01030000234549.a.a.a.a.a.a.c.b ENSGT00940000166196 ENSGT00940000161383.d.a ENSGT01030000234549.a.a.a.a.a.a.c.a.b ENSGT01030000234549.a.a.a.a.a.a.d ENSGT01030000234549.a.a.a.b ENSGT00940000155877 ENSGT00940000157503.i.b ENSGT00940000181969 ENSGT00940000166392 ENSGT00950000183005.a.a ENSGT00940000154102.b.a.a ENSGT00940000157877.b.h ENSGT00940000155317.a.a ##23 ENSGT01030000234648.a.b.a.b.a.b ENSGT00390000007696 ENSGT00390000006665.a ENSGT00940000157842.b ENSGT00940000156468.f ENSGT00940000156703.e.a ENSGT00940000154861.n.a ENSGT00530000063548.A ENSGT00940000158384.d ENSGT00940000181580 ENSGT00940000155071.C ENSGT00940000177280 ENSGT00940000162663 ENSGT00940000157154.d ENSGT01050000244882.b.c.a.a Ovalentaria_B ANCESTRAL SPECIES 5 ENSGT00530000063631.b.n.a ENSGT01090000260003.a.b.b.a.a.b.b.a.l ENSGT00940000166313.a ENSGT00940000166196 ENSGT00940000161383.d.a ENSGT01030000234549.a.a.a.a.a.a.c.a.b ENSGT00940000164702.b ENSGT01030000234549.a.a.a.a.a.a.d ENSGT01030000234549.a.a.a.b ENSGT00940000155877 ENSGT00940000157503.i.b ENSGT00940000166392 ENSGT00950000183005.a.a ENSGT00940000154102.b.a.a ENSGT00940000157877.b.h ENSGT00940000155317.a.a ##23 ENSGT01030000234648.a.b.a.b.a.b ENSGT00390000007696 ENSGT00390000006665.a ENSGT00940000157842.b ENSGT00940000156468.f ENSGT00940000156703.e.a ENSGT00940000154861.n.a ENSGT00530000063548.A ENSGT00940000158384.d ENSGT00940000181580 ENSGT00940000177280 ENSGT00940000155071.C ENSGT00940000162663 ENSGT00940000157154.d ENSGT01050000244882.b.c.a.a Pomacentridae ANCESTRAL SPECIES 33 ENSGT00940000160486.d ENSGT00940000164411 ENSGT00530000063631.b.n.a ENSGT01090000260003.a.b.b.a.a.b.b.a.l ENSGT00940000166313.a ENSGT00940000166196 ENSGT00940000164702.b ENSGT01030000234549.a.a.a.a.a.a.d ENSGT01030000234549.a.a.a.b ENSGT00940000155877 ENSGT00940000157503.i.b ENSGT00940000166392 ENSGT00950000183005.a.a ENSGT00940000154102.b.a.a ENSGT00940000157877.b.h.c ENSGT00940000155317.a.a ##23 ENSGT01030000234648.a.b.a.b.a.b ENSGT00390000007696 ENSGT00390000006665.a ENSGT00940000157842.b ENSGT00940000156468.f ENSGT00940000156703.e.a ENSGT00940000154861.n.a ENSGT00530000063548.A ENSGT00940000158384.d ENSGT00940000181580 ENSGT00940000155071.C ENSGT00940000162663 ENSGT00940000157154.d ENSGT01050000244882.b.c.a.a ENSGT00390000009678 Pomacentridae_A ANCESTRAL SPECIES 2 ENSGT00940000160486.d ENSGT00940000164411 ENSGT00530000063631.b.n.a ENSGT01090000260003.a.b.b.a.a.b.b.a.l ENSGT00940000166313.a ENSGT00940000166196 ENSGT00940000164702.b ENSGT01030000234549.a.a.a.a.a.a.d ENSGT01030000234549.a.a.a.b ENSGT00940000155877 ENSGT00940000157503.i.b ENSGT00940000166392 ENSGT00950000183005.a.a ENSGT00940000154102.b.a.a ENSGT00940000157877.b.h.c ENSGT00940000155317.a.a ##23 ENSGT01030000234648.a.b.a.b.a.b ENSGT00390000007696 ENSGT00390000006665.a ENSGT00940000157842.b ENSGT00940000156468.f ENSGT00940000156703.e.a ENSGT00940000154861.n.a ENSGT00530000063548.A ENSGT00940000158384.d ENSGT00940000181580 ENSGT00940000155071.C ENSGT00940000162663 ENSGT00940000157154.d ENSGT01050000244882.b.c.a.a ENSGT00390000009678 Amphiprion ANCESTRAL SPECIES 38 ENSGT00940000160486.d ENSGT00940000164411 ENSGT00530000063631.b.n.a ENSGT01090000260003.a.b.b.a.a.b.b.a.l ENSGT00940000166313.a ENSGT00940000166196 ENSGT00940000164702.b ENSGT01030000234549.a.a.a.a.a.a.d ENSGT01030000234549.a.a.a.b ENSGT00940000155877 ENSGT00940000157503.i.b ENSGT00940000166392 ENSGT00950000183005.a.a ENSGT00940000154102.b.a.a ENSGT00940000157877.b.h.c ENSGT00940000155317.a.a ##23 ENSGT01030000234648.a.b.a.b.a.b ENSGT00390000007696 ENSGT00390000006665.a ENSGT00940000157842.b ENSGT00940000156468.f ENSGT00940000156703.e.a ENSGT00940000154861.n.a ENSGT00940000163250.B.b.a.a ENSGT00530000063548.A ENSGT00940000158384.d ENSGT00940000181580 ENSGT00940000155071.C ENSGT00940000162663 ENSGT00940000157154.d ENSGT01050000244882.b.c.a.a Clown anemonefish MODERN SPECIES 1386 ENSAOCG00000020574 adnpa (ENSAOCG00000020540) BCL2L1 (ENSAOCG00000020533) gata1a (ENSAOCG00000020528) si:dkey-13a21.4 (ENSAOCG00000020491) hcfc1a (ENSAOCG00000020454) opn1sw2 (ENSAOCG00000020417) opn1lw1 (ENSAOCG00000020394) gnl3l (ENSAOCG00000020369) tfe3b (ENSAOCG00000020357) cxxc1b (ENSAOCG00000020325) mbd1b (ENSAOCG00000020272) ccdc120b (ENSAOCG00000020252) ENSAOCG00000020237 ENSAOCG00000020213 comtb (ENSAOCG00000020195) ##23 grm6b (ENSAOCG00000020181) traip (ENSAOCG00000020147) mon1a (ENSAOCG00000020133) ENSAOCG00000020104 camkvb (ENSAOCG00000020082) Orange clownfish MODERN SPECIES 20 MAFB (ENSAPEG00000023407) ENSAPEG00000023397 adnpa (ENSAPEG00000023391) BCL2L1 (ENSAPEG00000023385) gata1a (ENSAPEG00000023372) si:dkey-13a21.4 (ENSAPEG00000023338) ENSAPEG00000023323 opn1sw2 (ENSAPEG00000023305) opn1lw1 (ENSAPEG00000023291) gnl3l (ENSAPEG00000023280) tfe3b (ENSAPEG00000023266) cxxc1b (ENSAPEG00000023253) mbd1b (ENSAPEG00000023230) ccdc120b (ENSAPEG00000023200) SRPK3 (ENSAPEG00000023166) comtb (ENSAPEG00000023151) ##23 grm6b (ENSAPEG00000023124) traip (ENSAPEG00000023069) mon1a (ENSAPEG00000023054) ENSAPEG00000022994 camkvb (ENSAPEG00000022969) SEMA3F (ENSAPEG00000022941) arl8bb (ENSAPEG00000022867) ENSAPEG00000022852 ENSAPEG00000022832 bhlhe40 (ENSAPEG00000022818) ENSAPEG00000022812 ITPR1 (ENSAPEG00000022750) setmar (ENSAPEG00000022737) lrrn1 (ENSAPEG00000022732) ENSAPEG00000022640 Spiny chromis MODERN SPECIES 5 MAFB (ENSAPOG00000010261) ENSAPOG00000010385 adnpa (ENSAPOG00000010396) BCL2L1 (ENSAPOG00000010408) gata1a (ENSAPOG00000010416) si:dkey-13a21.4 (ENSAPOG00000010446) hcfc1a (ENSAPOG00000010487) opn1sw2 (ENSAPOG00000010519) opn1lw1 (ENSAPOG00000012463) gnl3l (ENSAPOG00000012629) tfe3b (ENSAPOG00000012695) cxxc1b (ENSAPOG00000012779) mbd1b (ENSAPOG00000012810) ccdc120b (ENSAPOG00000012838) SRPK3 (ENSAPOG00000012864) comtb (ENSAPOG00000012877) ##23 grm6b (ENSAPOG00000012948) traip (ENSAPOG00000013037) mon1a (ENSAPOG00000000350) ENSAPOG00000013161 camkvb (ENSAPOG00000013178) SEMA3F (ENSAPOG00000013275) arl8bb (ENSAPOG00000013328) NAAA (ENSAPOG00000013354) bhlhe40 (ENSAPOG00000013386) ITPR1 (ENSAPOG00000013619) setmar (ENSAPOG00000013638) lrrn1 (ENSAPOG00000013646) ENSAPOG00000013653 trnt1 (ENSAPOG00000013687) arl6ip5a (ENSAPOG00000013701) Bicolor damselfish MODERN SPECIES 1122 MAFB (ENSSPAG00000021215) ENSSPAG00000021221 adnpa (ENSSPAG00000021247) BCL2L1 (ENSSPAG00000021255) gata1a (ENSSPAG00000021259) si:dkey-13a21.4 (ENSSPAG00000021279) hcfc1a (ENSSPAG00000021303) opn1sw2 (ENSSPAG00000021344) opn1lw1 (ENSSPAG00000021356) gnl3l (ENSSPAG00000021373) tfe3b (ENSSPAG00000021389) cxxc1b (ENSSPAG00000021410) mbd1b (ENSSPAG00000021447) ccdc120b (ENSSPAG00000021482) SRPK3 (ENSSPAG00000021517) comtb (ENSSPAG00000021543) ##23 grm6b (ENSSPAG00000021631) traip (ENSSPAG00000021659) mon1a (ENSSPAG00000021702) ENSSPAG00000021727 Cichlidae ANCESTRAL SPECIES 1 ENSGT00940000164411 ENSGT00530000063631.b.n.a ENSGT01090000260003.a.b.b.a.a.b.b.a.l ENSGT00940000166313.a ENSGT00940000166196 ENSGT00940000161383.d.a ENSGT01030000234549.a.a.a.a.a.a.c.a.b ENSGT01030000234549.a.a.a.a.a.a.d ENSGT01030000234549.a.a.a.b ENSGT00940000155877 ENSGT00940000157503.i.b ENSGT00940000166392 ENSGT00950000183005.a.a ENSGT00940000154102.b.a.a ENSGT00940000157877.b.h ENSGT00940000155317.a.a ##23 ENSGT01030000234648.a.b.a.b.a.b ENSGT00390000007696 ENSGT00390000006665.a ENSGT00940000157842.b ENSGT00940000156468.f ENSGT00940000156703.e.a ENSGT00940000154861.n.a ENSGT00530000063548.A ENSGT00940000158384.d ENSGT00940000155071.C ENSGT00940000162663 ENSGT00940000157154.d ENSGT01050000244882.b.c.a.a ENSGT00390000009678 ENSGT00390000008631.a.o.a Pseudocrenilabrinae ANCESTRAL SPECIES 4 ENSGT00940000164411 ENSGT00530000063631.b.n.a ENSGT01090000260003.a.b.b.a.a.b.b.a.l ENSGT00940000166313.a ENSGT00940000166196 ENSGT00940000161383.d.a ENSGT01030000234549.a.a.a.a.a.a.c.a.b ENSGT01030000234549.a.a.a.a.a.a.d ENSGT01030000234549.a.a.a.b ENSGT00940000155877 ENSGT00940000157503.i.b ENSGT00940000166392 ENSGT00950000183005.a.a ENSGT00940000154102.b.a.a ENSGT00940000157877.b.h ENSGT00940000155317.a.a ##23 ENSGT01030000234648.a.b.a.b.a.b ENSGT00390000007696 ENSGT00390000006665.a ENSGT00940000157842.b ENSGT00940000156468.f ENSGT00940000156703.e.a ENSGT00940000154861.n.a ENSGT00530000063548.A ENSGT00940000158384.d ENSGT00940000155071.C ENSGT00940000162663 ENSGT00940000157154.d ENSGT01050000244882.b.c.a.a ENSGT00390000009678 ENSGT00390000008631.a.o.a Pseudocrenilabrinae_A ANCESTRAL SPECIES 2 ENSGT00940000164411 ENSGT00530000063631.b.n.a ENSGT01090000260003.a.b.b.a.a.b.b.a.l ENSGT00940000166313.a ENSGT00940000166196 ENSGT00940000161383.d.a ENSGT01030000234549.a.a.a.a.a.a.c.a.b ENSGT01030000234549.a.a.a.a.a.a.d ENSGT01030000234549.a.a.a.b ENSGT00940000155877 ENSGT00940000157503.i.b ENSGT00940000166392 ENSGT00950000183005.a.a ENSGT00940000154102.b.a.a ENSGT00940000157877.b.h ENSGT00940000155317.a.a ##23 ENSGT01030000234648.a.b.a.b.a.b ENSGT00390000007696 ENSGT00390000006665.a ENSGT00940000157842.b ENSGT00940000156468.f ENSGT00940000156703.e.a ENSGT00940000154861.n.a ENSGT00530000063548.A ENSGT00940000158384.d ENSGT00940000155071.C ENSGT00940000162663 ENSGT00940000157154.d ENSGT01050000244882.b.c.a.a ENSGT00390000009678 ENSGT00390000008631.a.o.a Haplochromini ANCESTRAL SPECIES 1 ENSGT00940000164411 ENSGT00530000063631.b.n.a ENSGT01090000260003.a.b.b.a.a.b.b.a.l ENSGT00940000166313.a ENSGT00940000166196 ENSGT00940000161383.d.a ENSGT01030000234549.a.a.a.a.a.a.c.a.b ENSGT01030000234549.a.a.a.a.a.a.d ENSGT01030000234549.a.a.a.b ENSGT00940000155877 ENSGT00940000157503.i.b ENSGT00940000166392 ENSGT00950000183005.a.a ENSGT00940000154102.b.a.a ENSGT00940000157877.b.h ENSGT00940000155317.a.a ##23 ENSGT01030000234648.a.b.a.b.a.b ENSGT00390000007696 ENSGT00390000006665.a ENSGT00940000157842.b ENSGT00940000156468.f ENSGT00940000156703.e.a ENSGT00940000154861.n.a ENSGT00530000063548.A ENSGT00940000158384.d ENSGT00940000155071.C ENSGT00940000162663 ENSGT00940000157154.d ENSGT01050000244882.b.c.a.a ENSGT00390000009678 ENSGT00390000008631.a.o.a Burton s mouthbrooder MODERN SPECIES 279 ENSHBUG00000013980 adnpa (ENSHBUG00000014001) ENSHBUG00000013989 gata1a (ENSHBUG00000014016) si:dkey-13a21.4 (ENSHBUG00000014023) hcfc1a (ENSHBUG00000014047) opn1sw2 (ENSHBUG00000014102) opn1sw2 (ENSHBUG00000014119) opn1lw1 (ENSHBUG00000014159) gnl3l (ENSHBUG00000014227) tfe3b (ENSHBUG00000014246) cxxc1b (ENSHBUG00000014254) mbd1b (ENSHBUG00000014270) ccdc120b (ENSHBUG00000014281) SRPK3 (ENSHBUG00000014340) comtb (ENSHBUG00000014357) ##23 grm6b (ENSHBUG00000014416) traip (ENSHBUG00000014431) mon1a (ENSHBUG00000014446) ENSHBUG00000014460 camkvb (ENSHBUG00000014473) SEMA3F (ENSHBUG00000014574) arl8bb (ENSHBUG00000014610) ENSHBUG00000014622 Haplochromini_A ANCESTRAL SPECIES ENSGT00940000164411 ENSGT00530000063631.b.n.a ENSGT01090000260003.a.b.b.a.a.b.b.a.l ENSGT00940000166313.a ENSGT00940000166196 ENSGT00940000161383.d.a ENSGT01030000234549.a.a.a.a.a.a.c.a.b ENSGT01030000234549.a.a.a.a.a.a.d ENSGT01030000234549.a.a.a.b ENSGT00940000155877 ENSGT00940000157503.i.b ENSGT00940000166392 ENSGT00950000183005.a.a ENSGT00940000154102.b.a.a ENSGT00940000157877.b.h ENSGT00940000155317.a.a ##23 ENSGT01030000234648.a.b.a.b.a.b ENSGT00390000007696 ENSGT00390000006665.a ENSGT00940000157842.b ENSGT00940000156468.f ENSGT00940000179368 ENSGT00940000156703.e.a ENSGT00940000154861.n.a ENSGT00530000063548.A ENSGT00940000158384.d ENSGT00940000155071.C ENSGT00940000162663 ENSGT00940000157154.d ENSGT01050000244882.b.c.a.a ENSGT00390000009678 Haplochromini_B ANCESTRAL SPECIES ENSGT00940000164411 ENSGT00530000063631.b.n.a ENSGT01090000260003.a.b.b.a.a.b.b.a.l ENSGT00940000166313.a ENSGT00940000166196 ENSGT00940000161383.d.a ENSGT01030000234549.a.a.a.a.a.a.c.a.b ENSGT01030000234549.a.a.a.a.a.a.d ENSGT01030000234549.a.a.a.b ENSGT00940000155877 ENSGT00940000157503.i.b ENSGT00940000166392 ENSGT00950000183005.a.a ENSGT00940000154102.b.a.a ENSGT00940000157877.b.h ENSGT00940000155317.a.a ##23 ENSGT01030000234648.a.b.a.b.a.b ENSGT00390000007696 ENSGT00390000006665.a ENSGT00940000157842.b ENSGT00940000156468.f ENSGT00940000179368 ENSGT00940000156703.e.a ENSGT00940000154861.n.a ENSGT00530000063548.A ENSGT00940000158384.d ENSGT00940000155071.C ENSGT00940000162663 ENSGT00940000157154.d ENSGT01050000244882.b.c.a.a ENSGT00390000009678 Zebra mbuna MODERN SPECIES 1108 ENSMZEG00005010154 adnpa (ENSMZEG00005010188) ENSMZEG00005010193 gata1a (ENSMZEG00005010202) si:dkey-13a21.4 (ENSMZEG00005010220) ENSMZEG00005010225 opn1sw2 (ENSMZEG00005010240) opn1sw2 (ENSMZEG00005010258) opn1lw1 (ENSMZEG00005010329) gnl3l (ENSMZEG00005010346) tfe3b (ENSMZEG00005010367) cxxc1b (ENSMZEG00005010397) mbd1b (ENSMZEG00005010421) ccdc120b (ENSMZEG00005010446) SRPK3 (ENSMZEG00005010462) comtb (ENSMZEG00005010499) ##23 grm6b (ENSMZEG00005010508) traip (ENSMZEG00005010532) mon1a (ENSMZEG00005010548) ENSMZEG00005010556 camkvb (ENSMZEG00005010584) ENSMZEG00005010650 SEMA3F (ENSMZEG00005010665) arl8bb (ENSMZEG00005010708) ENSMZEG00005010716 ENSMZEG00005010728 ENSMZEG00005010740 ip6k2a (ENSMZEG00005010798) ENSMZEG00005010825 cidec (ENSMZEG00005010835) ENSMZEG00005010867 Eastern happy MODERN SPECIES 17 ENSACLG00000021036 adnpa (ENSACLG00000021065) gata1a (ENSACLG00000021090) si:dkey-13a21.4 (ENSACLG00000021109) ENSACLG00000021128 opn1sw2 (ENSACLG00000021147) opn1sw2 (ENSACLG00000021193) opn1lw1 (ENSACLG00000021226) gnl3l (ENSACLG00000021244) tfe3b (ENSACLG00000021271) cxxc1b (ENSACLG00000021315) mbd1b (ENSACLG00000021383) ENSACLG00000021406 ccdc120b (ENSACLG00000021415) SRPK3 (ENSACLG00000021452) comtb (ENSACLG00000021475) ##23 grm6b (ENSACLG00000021488) traip (ENSACLG00000021544) mon1a (ENSACLG00000021606) ENSACLG00000021639 camkvb (ENSACLG00000021669) ENSACLG00000021691 SEMA3F (ENSACLG00000021730) ENSACLG00000021860 arl8bb (ENSACLG00000021872) ENSACLG00000021909 bhlhe40 (ENSACLG00000021923) ITPR1 (ENSACLG00000021949) setmar (ENSACLG00000022175) lrrn1 (ENSACLG00000022186) ENSACLG00000022197 P. nyererei MODERN SPECIES 685 cxxc1b (ENSPNYG00000015904) ccdc120b (ENSPNYG00000015866) SRPK3 (ENSPNYG00000015849) comtb (ENSPNYG00000015834) ##23 ENSPNYG00000015823 grm6b (ENSPNYG00000015798) ENSPNYG00000015758 mon1a (ENSPNYG00000015733) ENSPNYG00000015609 camkvb (ENSPNYG00000015516) ENSPNYG00000015496 SEMA3F (ENSPNYG00000015463) arl8bb (ENSPNYG00000015445) ENSPNYG00000015394 Lyretail cichlid MODERN SPECIES 296 ENSNBRG00000023169 MAFB (ENSNBRG00000023180) adnpa (ENSNBRG00000023187) ENSNBRG00000023195 gata1a (ENSNBRG00000023206) si:dkey-13a21.4 (ENSNBRG00000023214) ENSNBRG00000023227 opn1sw2 (ENSNBRG00000023236) opn1sw2 (ENSNBRG00000023247) opn1lw1 (ENSNBRG00000023323) gnl3l (ENSNBRG00000023334) tfe3b (ENSNBRG00000023362) cxxc1b (ENSNBRG00000023408) ccdc120b (ENSNBRG00000023464) ENSNBRG00000023479 comtb (ENSNBRG00000023483) ##23 grm6b (ENSNBRG00000023489) traip (ENSNBRG00000023496) ENSNBRG00000023505 camkvb (ENSNBRG00000023513) SEMA3F (ENSNBRG00000023532) arl8bb (ENSNBRG00000023542) ENSNBRG00000023549 BHLHE40 (ENSNBRG00000023554) ITPR1 (ENSNBRG00000023567) setmar (ENSNBRG00000023590) lrrn1 (ENSNBRG00000023596) ENSNBRG00000023604 trnt1 (ENSNBRG00000023606) arl6ip5a (ENSNBRG00000023616) FRMD4B (ENSNBRG00000023651) Nile tilapia MODERN SPECIES 17 MAFB (ENSONIG00000020811) ENSONIG00000020300 ENSONIG00000028248 ENSONIG00000020298 gata1a (ENSONIG00000020297) si:dkey-13a21.4 (ENSONIG00000020296) hcfc1a (ENSONIG00000020295) opn1sw2 (ENSONIG00000020294) opn1sw2 (ENSONIG00000020293) opn1lw1 (ENSONIG00000020292) gnl3l (ENSONIG00000029260) tfe3b (ENSONIG00000020291) cxxc1b (ENSONIG00000020290) ccdc120b (ENSONIG00000020288) SRPK3 (ENSONIG00000020287) comtb (ENSONIG00000020286) ##23 grm6b (ENSONIG00000020285) traip (ENSONIG00000020284) mon1a (ENSONIG00000020283) ENSONIG00000020282 camkvb (ENSONIG00000036268) SEMA3F (ENSONIG00000020280) ENSONIG00000028560 arl8bb (ENSONIG00000020279) NAAA (ENSONIG00000020278) bhlhe40 (ENSONIG00000020277) ITPR1 (ENSONIG00000020276) setmar (ENSONIG00000020275) lrrn1 (ENSONIG00000020810) ENSONIG00000020274 trnt1 (ENSONIG00000020273) Midas cichlid MODERN SPECIES 1043 ENSACIG00000011089 adnpa (ENSACIG00000011073) ENSACIG00000011059 gata1a (ENSACIG00000011048) si:dkey-13a21.4 (ENSACIG00000011024) ENSACIG00000011009 opn1sw2 (ENSACIG00000010993) opn1sw2 (ENSACIG00000010980) opn1lw1 (ENSACIG00000010960) gnl3l (ENSACIG00000010900) tfe3b (ENSACIG00000010840) cxxc1b (ENSACIG00000010624) mbd1b (ENSACIG00000010590) ccdc120b (ENSACIG00000010542) SRPK3 (ENSACIG00000010338) comtb (ENSACIG00000010204) ##23 grm6b (ENSACIG00000010172) traip (ENSACIG00000010020) mon1a (ENSACIG00000009986) MST1R (ENSACIG00000009876) camkvb (ENSACIG00000009801) SEMA3F (ENSACIG00000009744) arl8bb (ENSACIG00000009595) NAAA (ENSACIG00000009524) bhlhe40 (ENSACIG00000009498) ENSACIG00000009416 ENSACIG00000009395 ITPR1 (ENSACIG00000009297) setmar (ENSACIG00000009270) Atherinomorphae ANCESTRAL SPECIES 2 ENSGT00530000063631.b.n.a ENSGT01090000260003.a.b.b.a.a.b.b.a.l ENSGT00940000166313.a ENSGT00940000166196 ENSGT00940000164702.b ENSGT01030000234549.a.a.a.a.a.a.c.b ENSGT01030000234549.a.a.a.a.a.a.d ENSGT01030000234549.a.a.a.b ENSGT00940000155877 ENSGT00940000157503.i.b ENSGT00940000181969 ENSGT00940000166392 ENSGT00950000183005.a.a ENSGT00940000154102.b.a.a ENSGT00940000157877.b.h ENSGT00940000155317.a.a ##23 ENSGT01030000234648.a.b.a.b.a.b ENSGT00390000007696 ENSGT00390000006665.a ENSGT00940000157842.b ENSGT00940000156468.f ENSGT00940000156703.e.a ENSGT00940000154861.n.a ENSGT00530000063548.A ENSGT00940000158384.d ENSGT00940000155071.C ENSGT00940000177280 ENSGT00940000162663 ENSGT00940000157154.d ENSGT01050000244882.b.c.a.a ENSGT00390000009678 Cyprinodontiformes ANCESTRAL SPECIES 2 ENSGT00530000063631.b.n.a ENSGT01090000260003.a.b.b.a.a.b.b.a.l ENSGT00940000166313.a ENSGT00940000166196 ENSGT00940000164702.b ENSGT01030000234549.a.a.a.a.a.a.c.b ENSGT01030000234549.a.a.a.a.a.a.d ENSGT01030000234549.a.a.a.b ENSGT00940000155877 ENSGT00940000157503.i.b ENSGT00940000181969 ENSGT00940000166392 ENSGT00950000183005.a.a ENSGT00940000154102.b.a.a ENSGT00940000157877.b.h ENSGT00940000155317.a.a ##23 ENSGT01030000234648.a.b.a.b.a.b ENSGT00390000007696 ENSGT00390000006665.a ENSGT00940000157842.b ENSGT00940000156468.f ENSGT00940000156703.e.a ENSGT00940000154861.n.a ENSGT00530000063548.A ENSGT00940000158384.d ENSGT00940000177280 ENSGT00940000155071.C ENSGT00940000162663 ENSGT00940000157154.d ENSGT01050000244882.b.c.a.a ENSGT00390000009678 Aplocheiloidei ANCESTRAL SPECIES 76 ENSGT00530000063631.b.n.a ENSGT01090000260003.a.b.b.a.a.b.b.a.l ENSGT00940000166313.a ENSGT00940000166196 ENSGT00940000161383.d.a ENSGT01030000234549.a.a.a.a.a.a.c.b ENSGT00940000164702.b ENSGT01030000234549.a.a.a.a.a.a.d ENSGT01030000234549.a.a.a.b ENSGT00940000155877 ENSGT00940000157503.i.b ENSGT00940000166392 ENSGT00950000183005.a.a ENSGT00940000154102.b.a.a ENSGT00940000157877.b.h ENSGT00940000155317.a.a ##23 ENSGT01030000234648.a.b.a.b.a.b ENSGT00390000007696 ENSGT00390000006665.a ENSGT00940000157842.b ENSGT00940000156468.f ENSGT00940000156703.e.a ENSGT00940000154861.n.a ENSGT00530000063548.A ENSGT00940000158384.d ENSGT00940000155071.C ENSGT00940000162663 ENSGT00940000157154.d Mangrove rivulus MODERN SPECIES 139 adnpa (ENSKMAG00000021072) BCL2L1 (ENSKMAG00000021065) gata1a (ENSKMAG00000021051) si:dkey-13a21.4 (ENSKMAG00000021039) hcfc1a (ENSKMAG00000020984) opn1sw2 (ENSKMAG00000020951) opn1lw1 (ENSKMAG00000020908) gnl3l (ENSKMAG00000020874) tfe3b (ENSKMAG00000020858) ENSKMAG00000020845 cxxc1b (ENSKMAG00000020802) mbd1b (ENSKMAG00000020760) ccdc120b (ENSKMAG00000020721) SRPK3 (ENSKMAG00000020698) ENSKMAG00000020685 comtb (ENSKMAG00000020662) ##23 grm6b (ENSKMAG00000020636) traip (ENSKMAG00000020606) mon1a (ENSKMAG00000020581) ENSKMAG00000020521 camkvb (ENSKMAG00000020494) SEMA3F (ENSKMAG00000020412) arl8bb (ENSKMAG00000020329) ENSKMAG00000020310 bhlhe40 (ENSKMAG00000020298) ITPR1 (ENSKMAG00000020220) setmar (ENSKMAG00000020186) lrrn1 (ENSKMAG00000020176) Turquoise killifish MODERN SPECIES 1619 adnpa (ENSNFUG00015015148) BCL2L1 (ENSNFUG00015015141) GATA1A (ENSNFUG00015015117) si:dkey-13a21.4 (ENSNFUG00015015097) HCFC1 (ENSNFUG00015014937) opn1sw2 (ENSNFUG00015014885) opn1sw2 (ENSNFUG00015014824) ENSNFUG00015014685 Nfu_g_1_021486 (ENSNFUG00015014616) GNL3L (ENSNFUG00015014553) tfe3b (ENSNFUG00015014314) CXXC1 (ENSNFUG00015014008) ENSNFUG00015013989 CCDC120 (ENSNFUG00015013984) SRPK3 (ENSNFUG00015013920) COMTB (ENSNFUG00015013912) ##23 grm6b (ENSNFUG00015013210) TRAIP (ENSNFUG00015013172) MON1A (ENSNFUG00015013166) ENSNFUG00015013156 ITGA5 (ENSNFUG00015013119) BIN2B (ENSNFUG00015013099) TXNRD1 (ENSNFUG00015010795) CHST13 (ENSNFUG00015010692) SLC41A3 (ENSNFUG00015010690) ENSNFUG00015010685 ENSNFUG00015010670 acot8 (ENSNFUG00015010580) IFT52 (ENSNFUG00015019857) MYBL2 (ENSNFUG00015019626) rpn2 (ENSNFUG00015019399) Cyprinodontoidei ANCESTRAL SPECIES 4 ENSGT00530000063631.b.n.a ENSGT01090000260003.a.b.b.a.a.b.b.a.l ENSGT00940000166313.a ENSGT00940000166196 ENSGT00940000164702.b ENSGT01030000234549.a.a.a.a.a.a.c.b ENSGT01030000234549.a.a.a.a.a.a.d ENSGT01030000234549.a.a.a.b.s ENSGT00940000155877 ENSGT00940000157503.i.b ENSGT00940000181969 ENSGT00940000166392 ENSGT00950000183005.a.a ENSGT00940000154102.b.a.a ENSGT00940000157877.b.h ENSGT00940000155317.a.a ##23 ENSGT01030000234648.a.b.a.b.a.b ENSGT00390000007696 ENSGT00390000006665.a ENSGT00940000157842.b ENSGT00940000156468.f ENSGT00940000156703.e.a ENSGT00940000154861.n.a ENSGT00530000063548.A.l ENSGT00530000063548.A.k ENSGT00940000158384.d ENSGT00940000177280 ENSGT00940000155071.C ENSGT00940000162663 ENSGT00940000157154.d ENSGT00970000193381.a.a.a.a.a.a.a.d Poeciliinae ANCESTRAL SPECIES 4 ENSGT01090000260003.a.b.b.a.a.b.b.a.l ENSGT00940000166313.a ENSGT00940000166196 ENSGT00940000164702.b ENSGT01030000234549.a.a.a.a.a.a.c.b ENSGT01030000234549.a.a.a.a.a.a.d ENSGT01030000234549.a.a.a.b.s.b ENSGT01030000234549.a.a.a.b.s.a ENSGT00940000155877 ENSGT00940000157503.i.b ENSGT00940000181969 ENSGT00940000166392 ENSGT00950000183005.a.a ENSGT00940000154102.b.a.a ENSGT00940000157877.b.h ENSGT00940000155317.a.a ##23 ENSGT01030000234648.a.b.a.b.a.b ENSGT00390000007696 ENSGT00390000006665.a ENSGT00940000157842.b ENSGT00940000156468.f ENSGT00940000156326.a.b ENSGT01020000230354.A.a.a ENSGT00390000008631.a.o.a ENSGT00940000175464 ENSGT00390000009678 ENSGT01050000244882.b.c.a.a ENSGT00970000193381.a.a.a.a.a.a.a.d ENSGT00940000157154.d ENSGT00940000162663 ENSGT00940000155071.C Poecilia ANCESTRAL SPECIES 20 ENSGT00530000063631.b.n.a ENSGT01090000260003.a.b.b.a.a.b.b.a.l ENSGT00940000166313.a ENSGT00940000166196 ENSGT00940000164702.b ENSGT01030000234549.a.a.a.a.a.a.c.b ENSGT01030000234549.a.a.a.a.a.a.d ENSGT01030000234549.a.a.a.b.s.b ENSGT01030000234549.a.a.a.b.s.a ENSGT00940000155877 ENSGT00940000157503.i.b ENSGT00940000166392 ENSGT00950000183005.a.a ENSGT00940000154102.b.a.a ENSGT00940000157877.b.h ENSGT00940000155317.a.a ##23 ENSGT01030000234648.a.b.a.b.a.b ENSGT00390000007696 ENSGT00940000165164.b.j ENSGT00390000006665.a ENSGT00940000157842.b ENSGT00940000156468.f ENSGT00940000156326.a.b ENSGT01020000230354.A.a.a ENSGT00390000008631.a.o.a ENSGT00940000175464 ENSGT00390000009678 ENSGT01050000244882.b.c.a.a ENSGT00970000193381.a.a.a.a.a.a.a.d ENSGT00940000157154.d ENSGT00940000162663 NAME_6 ANCESTRAL SPECIES 141 ENSGT01030000234549.a.a.a.b.s.a ENSGT00940000155877 ENSGT00940000157503.i.b ENSGT00940000166392 ENSGT00950000183005.a.a ENSGT00940000154102.b.a.a ENSGT00940000157877.b.h ENSGT00940000155317.a.a ##23 ENSGT01030000234648.a.b.a.b.a.b ENSGT00390000007696 ENSGT00940000165164.b.j ENSGT00390000006665.a ENSGT00940000157842.b ENSGT00940000156468.f ENSGT00940000156326.a.b ENSGT01020000230354.A.a.a ENSGT00390000008631.a.o.a ENSGT00390000009678 ENSGT01050000244882.b.c.a.a ENSGT00970000193381.a.a.a.a.a.a.a.d ENSGT00940000157154.d ENSGT00940000162663 ENSGT00940000155071.C Sailfin molly MODERN SPECIES 886 ENSPLAG00000021152 gnl3l (ENSPLAG00000021161) tfe3b (ENSPLAG00000021183) cxxc1b (ENSPLAG00000021242) mbd1b (ENSPLAG00000021258) ccdc120b (ENSPLAG00000000459) SRPK3 (ENSPLAG00000021368) comtb (ENSPLAG00000021472) ##23 grm6b (ENSPLAG00000021493) traip (ENSPLAG00000021502) ENSPLAG00000021525 mon1a (ENSPLAG00000021533) ENSPLAG00000021615 Amazon molly MODERN SPECIES 430 ENSPFOG00000008152 gnl3l (ENSPFOG00000007874) tfe3b (ENSPFOG00000007817) cxxc1b (ENSPFOG00000007618) mbd1b (ENSPFOG00000007511) ccdc120b (ENSPFOG00000007506) comtb (ENSPFOG00000007504) ##23 grm6b (ENSPFOG00000007313) traip (ENSPFOG00000007180) ENSPFOG00000007170 mon1a (ENSPFOG00000007130) ENSPFOG00000006925 camkvb (ENSPFOG00000006783) mitfa (ENSPFOG00000006677) FRMD4B (ENSPFOG00000006321) arl6ip5a (ENSPFOG00000006253) arl6ip5a (ENSPFOG00000006251) trnt1 (ENSPFOG00000006194) ENSPFOG00000006189 ENSPFOG00000006181 lrrn1 (ENSPFOG00000020409) setmar (ENSPFOG00000006180) Guppy MODERN SPECIES 457 BCL2L1 (ENSPREG00000022250) gata1a (ENSPREG00000022245) si:dkey-13a21.4 (ENSPREG00000022241) hcfc1a (ENSPREG00000022223) opn1sw2 (ENSPREG00000022208) opn1sw2 (ENSPREG00000022188) ENSPREG00000022153 ENSPREG00000022087 ENSPREG00000022016 gnl3l (ENSPREG00000021994) tfe3b (ENSPREG00000021875) cxxc1b (ENSPREG00000021824) mbd1b (ENSPREG00000021805) ccdc120b (ENSPREG00000021798) SRPK3 (ENSPREG00000021760) comtb (ENSPREG00000021730) ##23 grm6b (ENSPREG00000021714) traip (ENSPREG00000021665) ENSPREG00000021636 mon1a (ENSPREG00000021632) ENSPREG00000021618 ENSPREG00000021586 camkvb (ENSPREG00000021561) mitfa (ENSPREG00000021528) FRMD4B (ENSPREG00000021492) arl6ip5a (ENSPREG00000021482) ENSPREG00000021478 trnt1 (ENSPREG00000021470) ENSPREG00000021464 ENSPREG00000021460 lrrn1 (ENSPREG00000021458) Platyfish MODERN SPECIES 12 BCL2L1 (ENSXMAG00000009583) gata1a (ENSXMAG00000024533) si:dkey-13a21.4 (ENSXMAG00000021749) hcfc1a (ENSXMAG00000009558) opn1sw2 (ENSXMAG00000009549) ENSXMAG00000025688 ENSXMAG00000007683 ENSXMAG00000007671 gnl3l (ENSXMAG00000007665) tfe3b (ENSXMAG00000007656) ENSXMAG00000027960 cxxc1b (ENSXMAG00000005630) mbd1b (ENSXMAG00000005628) ccdc120b (ENSXMAG00000005626) SRPK3 (ENSXMAG00000005597) comtb (ENSXMAG00000005592) ##23 pcsk1 (ENSXMAG00000005561) ENSXMAG00000021253 ell2 (ENSXMAG00000005547) glrx (ENSXMAG00000026354) ENSXMAG00000003422 rfesd (ENSXMAG00000003421) nudt2 (ENSXMAG00000003418) ube2r2 (ENSXMAG00000003409) ubap1 (ENSXMAG00000024301) dcaf12 (ENSXMAG00000001393) ubap2a (ENSXMAG00000001347) nop56 (ENSXMAG00000001317) zgc:64106 (ENSXMAG00000026372) ENSXMAG00000025585 aqp7 (ENSXMAG00000025335) NAME_4 ANCESTRAL SPECIES 63 ENSGT00940000164411.f ENSGT00530000063631.b.n.a ENSGT01090000260003.a.b.b.a.a.b.b.a.l ENSGT00940000166313.a ENSGT00940000166196 ENSGT00940000164702.b ENSGT01030000234549.a.a.a.a.a.a.c.b ENSGT01030000234549.a.a.a.a.a.a.d ENSGT01030000234549.a.a.a.b.s ENSGT00940000155877 ENSGT00940000157503.i.b ENSGT00940000166392 ENSGT00950000183005.a.a ENSGT00940000154102.b.a.a ENSGT00940000157877.b.h ENSGT00940000155317.a.a ##23 ENSGT01030000234648.a.b.a.b.a.b ENSGT00390000007696 ENSGT00390000006665.a ENSGT00940000157842.b ENSGT00940000156468.f ENSGT00940000156703.e.a ENSGT00940000154861.n.a ENSGT00530000063548.A.l ENSGT00530000063548.A.k ENSGT00940000158384.d ENSGT00940000155071.C ENSGT00940000162663 ENSGT00940000157154.d ENSGT00970000193381.a.a.a.a.a.a.a.d ENSGT01050000244882.b.c.a.a Mummichog MODERN SPECIES 313 tfe3b (ENSFHEG00000020182) cxxc1b (ENSFHEG00000020144) mbd1b (ENSFHEG00000020120) ccdc120b (ENSFHEG00000020101) ENSFHEG00000020017 comtb (ENSFHEG00000020002) ##23 grm6b (ENSFHEG00000019995) traip (ENSFHEG00000019960) mon1a (ENSFHEG00000019845) ENSFHEG00000019818 camkvb (ENSFHEG00000019743) SEMA3F (ENSFHEG00000019657) ENSFHEG00000019608 arl8bb (ENSFHEG00000019579) ENSFHEG00000019555 NAAA (ENSFHEG00000019547) bhlhe40 (ENSFHEG00000019542) ITPR1 (ENSFHEG00000019522) setmar (ENSFHEG00000019347) lrrn1 (ENSFHEG00000019336) ENSFHEG00000019332 Sheepshead minnow MODERN SPECIES 141 BCL2L1 (ENSCVAG00000001147) gata1a (ENSCVAG00000001149) si:dkey-13a21.4 (ENSCVAG00000001150) hcfc1a (ENSCVAG00000001152) opn1sw2 (ENSCVAG00000000046) opn1sw2 (ENSCVAG00000001155) ENSCVAG00000001006 ENSCVAG00000001157 ENSCVAG00000001159 gnl3l (ENSCVAG00000001161) tfe3b (ENSCVAG00000001163) cxxc1b (ENSCVAG00000001165) mbd1b (ENSCVAG00000001167) ccdc120b (ENSCVAG00000001169) SRPK3 (ENSCVAG00000001172) comtb (ENSCVAG00000001175) ##23 grm6b (ENSCVAG00000001176) traip (ENSCVAG00000001182) mon1a (ENSCVAG00000001185) ENSCVAG00000001188 camkvb (ENSCVAG00000001192) SEMA3F (ENSCVAG00000000915) sfswap (ENSCVAG00000001205) ENSCVAG00000001208 TRABD2A (ENSCVAG00000001210) HOOK3 (ENSCVAG00000001222) rnf170 (ENSCVAG00000001227) gpn3 (ENSCVAG00000001234) arpc3 (ENSCVAG00000001238) ENSCVAG00000001246 ENSCVAG00000001252 Oryzias ANCESTRAL SPECIES 1 ENSGT00940000164411 ENSGT00530000063631.b.n.a ENSGT01090000260003.a.b.b.a.a.b.b.a.l ENSGT00940000166313.a ENSGT00940000166196 ENSGT00940000164702.b ENSGT01030000234549.a.a.a.a.a.a.c.b ENSGT01030000234549.a.a.a.a.a.a.d ENSGT01030000234549.a.a.a.b ENSGT00940000155877 ENSGT00940000157503.i.b ENSGT00940000166392 ENSGT00950000183005.a.a ENSGT00940000154102.b.a.a ENSGT00940000157877.b.h ENSGT00940000155317.a.a ##23 ENSGT01030000234648.a.b.a.b.a.b ENSGT00390000007696 ENSGT00390000006665.a ENSGT00940000157842.b ENSGT00940000156468.f ENSGT00940000156703.e.a ENSGT00940000154697.a.b ENSGT00940000158384.c ENSGT00940000155071.D ENSGT00940000179168 ENSGT00390000008983.a ENSGT00940000157154.c ENSGT00940000165984 ENSGT00940000176938 ENSGT00950000182897.A Oryzias_b ANCESTRAL SPECIES 3 ENSGT00940000160486.d ENSGT00940000164411 ENSGT00530000063631.b.n.a ENSGT01090000260003.a.b.b.a.a.b.b.a.l ENSGT00940000166313.a ENSGT00940000166196 ENSGT00940000164702.b ENSGT01030000234549.a.a.a.a.a.a.d ENSGT01030000234549.a.a.a.b ENSGT00940000155877 ENSGT00940000157503.i.b ENSGT00940000166392 ENSGT00950000183005.a.a ENSGT00940000154102.b.a.a ENSGT00940000157877.b.h ENSGT00940000155317.a.a ##23 ENSGT01030000234648.a.b.a.b.a.b ENSGT00390000007696 ENSGT00390000006665.a ENSGT00940000157842.b ENSGT00940000156468.f ENSGT00940000156703.e.a ENSGT00940000154697.a.b ENSGT00940000158384.c ENSGT00940000155071.D ENSGT00390000008983.a ENSGT00940000157154.c ENSGT00940000165984 ENSGT00940000176938 ENSGT00950000182897.A ENSGT00940000156561.a.b.b Javanese ricefish MODERN SPECIES 19 ENSOJAG00000021506 adnpa (ENSOJAG00000021497) ENSOJAG00000021490 gata1a (ENSOJAG00000021488) si:dkey-13a21.4 (ENSOJAG00000021482) hcfc1a (ENSOJAG00000021155) opn1sw2 (ENSOJAG00000021110) ENSOJAG00000021068 ENSOJAG00000021046 gnl3l (ENSOJAG00000021019) tfe3b (ENSOJAG00000020986) cxxc1b (ENSOJAG00000020840) mbd1b (ENSOJAG00000020799) ccdc120b (ENSOJAG00000020787) SRPK3 (ENSOJAG00000020679) comtb (ENSOJAG00000020667) ##23 grm6b (ENSOJAG00000020220) traip (ENSOJAG00000020144) mon1a (ENSOJAG00000020130) ENSOJAG00000020111 camkvb (ENSOJAG00000020021) SEMA3F (ENSOJAG00000019102) tomm34 (ENSOJAG00000018996) BHLHE40 (ENSOJAG00000018979) sumf1 (ENSOJAG00000018036) lrrn1 (ENSOJAG00000018020) ENSOJAG00000018007 ENSOJAG00000017985 zc3h10 (ENSOJAG00000017976) ENSOJAG00000017223 ENSOJAG00000017169 Indian medaka MODERN SPECIES 8 ENSOMEG00000000634 adnpa (ENSOMEG00000023725) ENSOMEG00000023723 gata1a (ENSOMEG00000023720) opn1sw2 (ENSOMEG00000023716) ENSOMEG00000023708 opn1sw2 (ENSOMEG00000023704) opn1lw1 (ENSOMEG00000023693) gnl3l (ENSOMEG00000023685) tfe3b (ENSOMEG00000023677) cxxc1b (ENSOMEG00000023668) mbd1b (ENSOMEG00000023660) ccdc120b (ENSOMEG00000023649) ENSOMEG00000023641 ENSOMEG00000023630 comtb (ENSOMEG00000023614) ##23 grm6b (ENSOMEG00000023604) traip (ENSOMEG00000023576) mon1a (ENSOMEG00000023547) ENSOMEG00000023525 camkvb (ENSOMEG00000023496) ormdl1 (ENSOMEG00000023479) ENSOMEG00000023475 SEMA3F (ENSOMEG00000023448) tomm34 (ENSOMEG00000023382) BHLHE40 (ENSOMEG00000023321) ITPR1 (ENSOMEG00000023274) sumf1 (ENSOMEG00000023220) lrrn1 (ENSOMEG00000023199) ENSOMEG00000023179 ENSOMEG00000023139 Oryzias_a ANCESTRAL SPECIES 5 ENSGT00940000164411 ENSGT00530000063631.b.n.a ENSGT01090000260003.a.b.b.a.a.b.b.a.l ENSGT00940000166313.a ENSGT00940000164702.b ENSGT01030000234549.a.a.a.a.a.a.c.b ENSGT00940000166196 ENSGT01030000234549.a.a.a.a.a.a.d ENSGT01030000234549.a.a.a.b ENSGT00940000155877 ENSGT00940000157503.i.b ENSGT00940000166392 ENSGT00950000183005.a.a ENSGT00940000154102.b.a.a ENSGT00940000157877.b.h ENSGT00940000155317.a.a ##23 ENSGT01030000234648.a.b.a.b.a.b ENSGT00390000007696 ENSGT00390000006665.a ENSGT00940000157842.b ENSGT00940000156468.f ENSGT00940000156703.e.a ENSGT00940000154697.a.b ENSGT00940000158384.c ENSGT00940000155071.D ENSGT00940000179168 ENSGT00390000008983.a ENSGT00940000157154.c ENSGT00940000165984 ENSGT00940000156246.d ENSGT00950000182897.A Chinese medaka MODERN SPECIES 655 ENSOSIG00000009299 adnpa (ENSOSIG00000009297) BCL2L1 (ENSOSIG00000009295) gata1a (ENSOSIG00000009293) si:dkey-13a21.4 (ENSOSIG00000009290) hcfc1a (ENSOSIG00000009288) opn1sw2 (ENSOSIG00000009284) opn1sw2 (ENSOSIG00000009282) ENSOSIG00000009264 gnl3l (ENSOSIG00000008975) tfe3b (ENSOSIG00000008770) cxxc1b (ENSOSIG00000008735) ENSOSIG00000008731 ccdc120b (ENSOSIG00000008730) SRPK3 (ENSOSIG00000006352) comtb (ENSOSIG00000006338) ##23 grm6b (ENSOSIG00000006276) traip (ENSOSIG00000006266) mon1a (ENSOSIG00000006264) ENSOSIG00000006262 camkvb (ENSOSIG00000006258) tomm34 (ENSOSIG00000004563) BHLHE40 (ENSOSIG00000004561) ITPR1 (ENSOSIG00000004278) sumf1 (ENSOSIG00000002024) lrrn1 (ENSOSIG00000001976) ENSOSIG00000001970 ENSOSIG00000001961 zc3h10 (ENSOSIG00000001956) ESYT1 (ENSOSIG00000001259) ENSOSIG00000001253 Japanese Medaka HdrR MODERN SPECIES 19 adnpa (ENSORLG00000013954) ENSORLG00000024903 gata1a (ENSORLG00000013980) si:dkey-13a21.4 (ENSORLG00000025098) hcfc1a (ENSORLG00000014012) kfh-b (ENSORLG00000028370) ENSORLG00000014058 kfh-r (ENSORLG00000014088) gnl3l (ENSORLG00000014117) tfe3b (ENSORLG00000014134) ENSORLG00000029478 cxxc1b (ENSORLG00000014161) mbd1b (ENSORLG00000029390) ccdc120b (ENSORLG00000014183) ENSORLG00000014212 comtb (ENSORLG00000014228) ##23 grm6b (ENSORLG00000014253) traip (ENSORLG00000014261) mon1a (ENSORLG00000014273) ENSORLG00000014291 camkvb (ENSORLG00000014299) ENSORLG00000014370 tomm34 (ENSORLG00000014386) bhlhe40 (ENSORLG00000014397) ITPR1 (ENSORLG00000014557) ENSORLG00000029017 sumf1 (ENSORLG00000014571) lrrn1 (ENSORLG00000014579) ENSORLG00000014588 ENSORLG00000024075 zc3h10 (ENSORLG00000014596) Protacanthopterygii ANCESTRAL SPECIES 24 ENSGT00940000158405 ENSGT00940000160486.d ENSGT00940000164411 ENSGT00530000063631.b.n.a ENSGT01090000260003.a.b.b.a.a.b.b.a.l ENSGT00940000166313.a ENSGT00940000161383.d.a ENSGT01030000234549.a.a.a.a.a.a ENSGT01030000234549.a.a.a.b.cb.a ENSGT00940000155877 ENSGT00940000157503.i.b ENSGT00940000166392.c ENSGT00950000183005.a.a ENSGT00940000154102.b.a.a ENSGT00940000157877.b.h ENSGT00940000155317.a.a ##23 ENSGT01030000234648.a.b.a.b.a.b ENSGT00390000007696 ENSGT00390000006665.a ENSGT00940000157842.b ENSGT00940000156468.f ENSGT00940000156703.e.a ENSGT00940000154861.n.a ENSGT00940000158384.d ENSGT00940000155071.C ENSGT00940000162663 ENSGT00940000157154.d ENSGT01050000244882.b.c.a.a ENSGT00390000009678 ENSGT00390000008631.a.o.a ENSGT01020000230354.A.a.a Northern pike DUPLICATION Northern pike MODERN SPECIES 11 ENSELUG00000010330 kcnd3 (ENSELUG00000010238) ENSELUG00000025745 ddx20 (ENSELUG00000010260) ENSELUG00000010271 ENSELUG00000033720 B4GALT3 (ENSELUG00000010296) bgnb (ENSELUG00000001635) ENSELUG00000030150 ENSELUG00000007723 tsr2 (ENSELUG00000007768) ENSELUG00000027361 CDK16 (ENSELUG00000007866) comta (ENSELUG00000029048) ##23 abt1 (ENSELUG00000007974) ENSELUG00000025738 grm6a (ENSELUG00000004674) pim2 (ENSELUG00000004786) otud5a (ENSELUG00000005004) ENSELUG00000005075 ENSELUG00000005052 uxt (ENSELUG00000001230) ENSELUG00000026224 zgc:86609 (ENSELUG00000010388) ENSELUG00000010401 USP11 (ENSELUG00000010436) slc6a8 (ENSELUG00000010479) slc35a2 (ENSELUG00000001521) BAP31 (ENSELUG00000032776) Northern pike MODERN SPECIES 16 ENSELUG00000004732 fam83d (ENSELUG00000004726) MAFB (ENSELUG00000004717) ENSELUG00000004696 adnpa (ENSELUG00000004665) BCL2L1 (ENSELUG00000004651) gata1a (ENSELUG00000004641) hcfc1a (ENSELUG00000004626) ENSELUG00000004583 gnl3l (ENSELUG00000004555) tfe3b (ENSELUG00000004498) cxxc1b (ENSELUG00000004423) mbd1b (ENSELUG00000004375) ccdc120b (ENSELUG00000004322) SRPK3 (ENSELUG00000001310) comtb (ENSELUG00000004237) ##23 grm6b (ENSELUG00000004228) ENSELUG00000004204 mon1a (ENSELUG00000004180) ENSELUG00000004158 ENSELUG00000033830 ENSELUG00000004107 camkvb (ENSELUG00000004070) SEMA3F (ENSELUG00000004030) arl8bb (ENSELUG00000003984) bhlhe40 (ENSELUG00000001165) ITPR1 (ENSELUG00000003888) setmar (ENSELUG00000003826) lrrn1 (ENSELUG00000003813) ENSELUG00000028972 trnt1 (ENSELUG00000003802) Salmoninae DUPLICATION Salmoninae DUPLICATION Salmoninae ANCESTRAL SPECIES 8 ENSGT00950000182893.a.a.b.b.f ENSGT00940000158405.g ENSGT00940000160486.d.a ENSGT00940000164411.c ENSGT00530000063631.b.n.a.c ENSGT01090000260003.a.b.b.a.a.b.b.a.l.c ENSGT00940000166313.a.c ENSGT00940000161383.d.a.a ENSGT01030000234549.a.a.a.b.cb.a.b.b ENSGT00940000157503.i.b.c ENSGT00940000166392.c.b ENSGT00730000111044 ENSGT00950000183005.a.a.c ENSGT00940000154102.b.a.a.c ENSGT00940000157877.b.h.h ENSGT00940000155317.a.a.q.a ##23 ENSGT01030000234648.a.b.a.b.a.b.f ENSGT00390000007696 ENSGT00390000006665.a.b ENSGT00940000157842.b.f ENSGT00940000156468.f.c ENSGT00940000156703.e.a.b ENSGT00940000158384.d.c ENSGT00940000155071.C.f ENSGT00940000162663.d ENSGT00940000157154.d.e ENSGT01050000244882.b.c.a.a.d ENSGT01010000224106 ENSGT00390000008631.a.o.a.a ENSGT01020000230354.A.a.a.c ENSGT00940000156326.a.b.d Salmoninae_a ANCESTRAL SPECIES 25 ENSGT00950000182893.a.a.b.b.f ENSGT00940000158405.g ENSGT00940000160486.d.a ENSGT00940000164411.c ENSGT00530000063631.b.n.a.c ENSGT01090000260003.a.b.b.a.a.b.b.a.l.c ENSGT00940000166313.a.c ENSGT00940000161383.d.a.a ENSGT01030000234549.a.a.a.b.cb.a.b.b ENSGT00940000157503.i.b.c ENSGT00940000166392.c.b ENSGT00730000111044 ENSGT00950000183005.a.a.c ENSGT00940000154102.b.a.a.c ENSGT00940000157877.b.h.h ENSGT00940000155317.a.a.q.a ##23 ENSGT01030000234648.a.b.a.b.a.b.f ENSGT00390000007696 ENSGT00390000006665.a.b ENSGT00940000157842.b.f ENSGT00940000156468.f.c ENSGT00940000156703.e.a.b ENSGT00940000158384.d.c ENSGT00940000155071.C.f ENSGT00940000162663.d ENSGT00940000157154.d.e ENSGT01050000244882.b.c.a.a.d ENSGT01010000224106 ENSGT00390000008631.a.o.a.a ENSGT01020000230354.A.a.a.c ENSGT00940000156326.a.b.d Oncorhynchus ANCESTRAL SPECIES 5 ENSGT00940000160486.d.a ENSGT00940000164411.c ENSGT00530000063631.b.n.a.c ENSGT01090000260003.a.b.b.a.a.b.b.a.l.c ENSGT00940000166313.a.c ENSGT00940000161383.d.a.a ENSGT01030000234549.a.a.a.b.cb.a.b.b ENSGT00940000157503.i.b.c ENSGT00940000166392.c.b ENSGT00940000164755.A ENSGT00940000159667.a.f ENSGT00730000111044 ENSGT00950000183005.a.a.c ENSGT00940000154102.b.a.a.c ENSGT00940000157877.b.h.h ENSGT00940000155317.a.a.q.a ##23 ENSGT01030000234648.a.b.a.b.a.b.f ENSGT00390000007696 ENSGT00390000006665.a.b ENSGT00940000157842.b.f ENSGT00940000156468.f.c ENSGT00940000156703.e.a.b ENSGT00940000158384.d.c ENSGT00940000155071.C.f ENSGT00940000162663.d ENSGT00940000157154.d.e ENSGT01050000244882.b.c.a.a.d ENSGT01010000224106 ENSGT00390000008631.a.o.a.a ENSGT01020000230354.A.a.a.c ENSGT00940000156326.a.b.d Oncorhynchus_a ANCESTRAL SPECIES 4 ENSGT00950000182893.a.a.b.b.f ENSGT00940000158405.g ENSGT00940000160486.d.a ENSGT00940000164411.c ENSGT00530000063631.b.n.a.c ENSGT01090000260003.a.b.b.a.a.b.b.a.l.c ENSGT00940000166313.a.c ENSGT00940000161383.d.a.a ENSGT01030000234549.a.a.a.b.cb.a.b.b ENSGT00940000157503.i.b.c ENSGT00940000166392.c.b ENSGT00730000111044 ENSGT00950000183005.a.a.c ENSGT00940000154102.b.a.a.c ENSGT00940000157877.b.h.h ENSGT00940000155317.a.a.q.a ##23 ENSGT01030000234648.a.b.a.b.a.b.f ENSGT00390000007696 ENSGT00390000006665.a.b ENSGT00940000157842.b.f ENSGT00940000175393 ENSGT00940000156468.f.c ENSGT00940000156703.e.a.b ENSGT00940000158384.d.c ENSGT00940000155071.C.f ENSGT00940000162663.d ENSGT00940000157154.d.e ENSGT01050000244882.b.c.a.a.d ENSGT01010000224106 ENSGT00390000008631.a.o.a.a ENSGT01020000230354.A.a.a.c Coho salmon MODERN SPECIES 25 top1a (ENSOKIG00005001118) ENSOKIG00005001012 fam83d (ENSOKIG00005001007) MAFB (ENSOKIG00005001002) ENSOKIG00005000996 adnpa (ENSOKIG00005000989) BCL2L1 (ENSOKIG00005000981) gata1a (ENSOKIG00005000975) HCFC1 (ENSOKIG00005000945) ENSOKIG00005000917 tfe3b (ENSOKIG00005000908) CXXC1 (ENSOKIG00005000830) mbd1b (ENSOKIG00005000756) ccdc120b (ENSOKIG00005000738) SRPK3 (ENSOKIG00005000728) comtb (ENSOKIG00005000717) ##23 grm6b (ENSOKIG00005000710) traip (ENSOKIG00005000674) mon1a (ENSOKIG00005000633) ENSOKIG00005000620 ENSOKIG00005000607 ENSOKIG00005000597 ENSOKIG00005000585 camkvb (ENSOKIG00005000557) SEMA3F (ENSOKIG00005000482) bhlhe40 (ENSOKIG00005000439) ITPR1 (ENSOKIG00005000297) lrrn1 (ENSOKIG00005000048) ENSOKIG00005000039 ENSOKIG00005000022 arl6ip5a (ENSOKIG00005000004) Chinook salmon MODERN SPECIES 31 TOP1 (ENSOTSG00005026355) ENSOTSG00005026354 fam83d (ENSOTSG00005026353) MAFB (ENSOTSG00005026352) ENSOTSG00005026351 adnpa (ENSOTSG00005026350) BCL2L1 (ENSOTSG00005026349) gata1a (ENSOTSG00005026348) HCFC1 (ENSOTSG00005025435) ENSOTSG00005030472 tfe3b (ENSOTSG00005030461) cxxc1b (ENSOTSG00005030449) mbd1b (ENSOTSG00005030447) ccdc120b (ENSOTSG00005030445) SRPK3 (ENSOTSG00005030443) comtb (ENSOTSG00005030442) ##23 grm6b (ENSOTSG00005030440) traip (ENSOTSG00005030396) mon1a (ENSOTSG00005030356) MST1R (ENSOTSG00005030351) ENSOTSG00005030348 ENSOTSG00005030346 camkvb (ENSOTSG00005030318) SEMA3F (ENSOTSG00005029841) bhlhe40 (ENSOTSG00005029834) ITPR1 (ENSOTSG00005029499) setmar (ENSOTSG00005029489) lrrn1 (ENSOTSG00005029488) ENSOTSG00005029487 ENSOTSG00005029486 arl6ip5a (ENSOTSG00005029485) Rainbow trout MODERN SPECIES 28 ENSOMYG00000022692 ENSOMYG00000022642 adnpa (ENSOMYG00000022627) ENSOMYG00000022616 ENSOMYG00000053348 gata1a (ENSOMYG00000022604) ENSOMYG00000022484 ENSOMYG00000073696 ENSOMYG00000022325 tfe3b (ENSOMYG00000022308) ENSOMYG00000021738 mbd1b (ENSOMYG00000021578) ENSOMYG00000064320 ccdc120b (ENSOMYG00000021563) ENSOMYG00000021549 comtb (ENSOMYG00000021507) ##23 grm6b (ENSOMYG00000021486) traip (ENSOMYG00000021463) mon1a (ENSOMYG00000021436) MST1R (ENSOMYG00000021410) ENSOMYG00000021362 ENSOMYG00000073574 camkvb (ENSOMYG00000021343) ENSOMYG00000019619 bhlhe40 (ENSOMYG00000019293) ENSOMYG00000019279 ENSOMYG00000018924 ENSOMYG00000058313 setmar (ENSOMYG00000018797) lrrn1 (ENSOMYG00000018787) ENSOMYG00000018779 Salmo ANCESTRAL SPECIES 6 ENSGT00940000155006.e.a.c ENSGT00950000182893.a.a.b.b.f ENSGT00940000158405.g ENSGT00940000160486.d.a ENSGT00940000164411.c ENSGT00530000063631.b.n.a.c ENSGT01090000260003.a.b.b.a.a.b.b.a.l.c ENSGT00940000166313.a.c ENSGT00940000161383.d.a.a ENSGT01030000234549.a.a.a.b.cb.a.b.b ENSGT00940000157503.i.b.c ENSGT00940000166392.c.b ENSGT00950000183005.a.a.c ENSGT00940000154102.b.a.a.c ENSGT00940000157877.b.h.h ENSGT00940000155317.a.a.q.a ##23 ENSGT01030000234648.a.b.a.b.a.b.f ENSGT00390000007696 ENSGT00390000006665.a.b ENSGT00940000157842.b.f ENSGT00940000156468.f.c ENSGT00940000156703.e.a.b ENSGT00940000158384.d.c ENSGT00940000155071.C.f ENSGT00940000162663.d ENSGT00940000157154.d.e ENSGT01050000244882.b.c.a.a.d ENSGT01010000224106 ENSGT00390000009678.f ENSGT00390000008631.a.o.a.a ENSGT01020000230354.A.a.a.c Atlantic salmon MODERN SPECIES 14 top1a (ENSSSAG00000081414) ENSSSAG00000081397 fam83d (ENSSSAG00000081395) ENSSSAG00000113089 ENSSSAG00000081390 adnpa (ENSSSAG00000081389) gata1a (ENSSSAG00000081386) ENSSSAG00000081388 ENSSSAG00000081355 ENSSSAG00000081346 tfe3b (ENSSSAG00000081340) cxxc1b (ENSSSAG00000081321) mbd1b (ENSSSAG00000081317) ccdc120b (ENSSSAG00000107262) ENSSSAG00000081305 comtb (ENSSSAG00000095832) ##23 grm6b (ENSSSAG00000105405) traip (ENSSSAG00000051195) mon1a (ENSSSAG00000081282) ENSSSAG00000081275 ENSSSAG00000117917 ENSSSAG00000081274 camkvb (ENSSSAG00000095316) ENSSSAG00000081205 BHLH2 (ENSSSAG00000081153) ENSSSAG00000078769 setmar (ENSSSAG00000078434) lrrn1 (ENSSSAG00000085844) ENSSSAG00000078424 ENSSSAG00000087334 trnt1 (ENSSSAG00000078413) River trout MODERN SPECIES 7 snai1a (ENSSTUG00000033870) ENSSTUG00000033889 top1a (ENSSTUG00000033912) ENSSTUG00000034597 fam83d (ENSSTUG00000034601) ENSSTUG00000034608 adnpa (ENSSTUG00000034635) BCL2L1 (ENSSTUG00000034657) gata1a (ENSSTUG00000034673) HCFC1 (ENSSTUG00000034680) ENSSTUG00000034912 tfe3b (ENSSTUG00000034951) cxxc1b (ENSSTUG00000035005) mbd1b (ENSSTUG00000035673) ccdc120b (ENSSTUG00000035764) comtb (ENSSTUG00000035786) ##23 grm6b (ENSSTUG00000035821) traip (ENSSTUG00000035875) mon1a (ENSSTUG00000035963) ENSSTUG00000035987 ENSSTUG00000036057 camkvb (ENSSTUG00000036070) SEMA3F (ENSSTUG00000036160) bhlhe40 (ENSSTUG00000037370) ITPR1 (ENSSTUG00000034046) setmar (ENSSTUG00000034728) ENSSTUG00000034740 lrrn1 (ENSSTUG00000034747) ENSSTUG00000034758 ENSSTUG00000034824 arl6ip5a (ENSSTUG00000034827) Huchen MODERN SPECIES 2095 MAFB (ENSHHUG00000019154) ENSHHUG00000019149 ENSHHUG00000019136 adnpa (ENSHHUG00000019123) BCL2L1 (ENSHHUG00000019112) gata1a (ENSHHUG00000019104) HCFC1 (ENSHHUG00000019091) ENSHHUG00000019084 ENSHHUG00000018987 tfe3b (ENSHHUG00000018985) cxxc1b (ENSHHUG00000018861) mbd1b (ENSHHUG00000018835) ccdc120b (ENSHHUG00000018833) ENSHHUG00000018832 SRPK3 (ENSHHUG00000018790) comtb (ENSHHUG00000018775) ##23 grm6b (ENSHHUG00000018125) traip (ENSHHUG00000018113) mon1a (ENSHHUG00000018109) ENSHHUG00000018068 Salmoninae ANCESTRAL SPECIES 103 ENSGT00940000160486.d.b ENSGT00940000164411.d ENSGT00530000063631.b.n.a.d ENSGT01090000260003.a.b.b.a.a.b.b.a.l.d ENSGT00940000166313.a.d ENSGT00940000161383.d.a.b ENSGT01030000234549.a.a.a.a.a.a ENSGT01030000234549.a.a.a.b.cb.a.a ENSGT01030000234549.a.a.a.b.cb.a.b.a ENSGT00940000155877 ENSGT00940000157503.i.b.d ENSGT00940000166392.c.a ENSGT00950000183005.a.a.d ENSGT00940000154102.b.a.a.d ENSGT00940000157877.b.h.g ENSGT00940000155317.a.a.q.b ##23 ENSGT01030000234648.a.b.a.b.a.b.e ENSGT00980000202247 ENSGT00390000006665.a.a ENSGT00940000157842.b.e ENSGT00940000156468.f.d ENSGT00940000156703.e.a.a ENSGT00940000154861.n.a ENSGT00940000158384.d.d ENSGT00940000155071.C.e ENSGT00940000162663.c ENSGT00940000157154.d.f ENSGT01050000244882.b.c.a.a.c ENSGT00390000009678 ENSGT00390000008631.a.o.a.b ENSGT01020000230354.A.a.a.d Salmoninae_a ANCESTRAL SPECIES 29 ENSGT00940000160486.d.b ENSGT00940000164411.d ENSGT00530000063631.b.n.a.d ENSGT01090000260003.a.b.b.a.a.b.b.a.l.d ENSGT00940000166313.a.d ENSGT00940000161383.d.a.b ENSGT01030000234549.a.a.a.a.a.a ENSGT01030000234549.a.a.a.b.cb.a.a ENSGT01030000234549.a.a.a.b.cb.a.b.a ENSGT00940000155877 ENSGT00940000157503.i.b.d ENSGT00940000166392.c.a ENSGT00950000183005.a.a.d ENSGT00940000154102.b.a.a.d ENSGT00940000157877.b.h.g ENSGT00940000155317.a.a.q.b ##23 ENSGT01030000234648.a.b.a.b.a.b.e ENSGT00980000202247 ENSGT00390000006665.a.a ENSGT00940000157842.b.e ENSGT00940000156468.f.d ENSGT00940000156703.e.a.a ENSGT00940000154861.n.a ENSGT00940000158384.d.d ENSGT00940000155071.C.e ENSGT00940000162663.c ENSGT00940000157154.d.f ENSGT01050000244882.b.c.a.a.c ENSGT00390000009678 ENSGT00390000008631.a.o.a.b ENSGT01020000230354.A.a.a.d Salmo ANCESTRAL SPECIES 33 ENSGT00940000160486.d.b ENSGT00940000164411.d ENSGT00530000063631.b.n.a.d ENSGT01090000260003.a.b.b.a.a.b.b.a.l.d ENSGT00940000166313.a.d ENSGT00940000161383.d.a.b ENSGT01030000234549.a.a.a.a.a.a ENSGT01030000234549.a.a.a.b.cb.a.a ENSGT01030000234549.a.a.a.b.cb.a.b.a ENSGT00940000155877 ENSGT00940000157503.i.b.d ENSGT00730000111044 ENSGT00950000183005.a.a.d ENSGT00940000154102.b.a.a.d ENSGT00940000157877.b.h.g ENSGT00940000155317.a.a.q.b ##23 ENSGT01030000234648.a.b.a.b.a.b.e ENSGT00390000006665.a.a ENSGT00940000157842.b.e ENSGT00940000156468.f.d ENSGT00940000156703.e.a.a ENSGT00940000154861.n.a ENSGT00940000158384.d.d ENSGT00940000155071.C.e ENSGT00940000162663.c ENSGT00940000157154.d.f ENSGT01050000244882.b.c.a.a.c ENSGT00390000009678.e ENSGT00390000008631.a.o.a.b ENSGT01020000230354.A.a.a.d ENSGT00940000156326.a.b.c Atlantic salmon MODERN SPECIES 3 BCLX (ENSSSAG00000008513) gata1a (ENSSSAG00000008520) ENSSSAG00000089688 ENSSSAG00000008592 opn1sw2 (ENSSSAG00000104363) ENSSSAG00000010443 ENSSSAG00000114717 gnl3l (ENSSSAG00000015523) ENSSSAG00000118599 tfe3b (ENSSSAG00000015673) ENSSSAG00000020016 ENSSSAG00000092788 mbd1b (ENSSSAG00000035232) ccdc120b (ENSSSAG00000035547) ENSSSAG00000036227 comtb (ENSSSAG00000042490) ##23 grm6b (ENSSSAG00000093082) mon1a (ENSSSAG00000043049) ENSSSAG00000043080 camkvb (ENSSSAG00000043153) ENSSSAG00000043762 arl8bb (ENSSSAG00000116454) BHLH2 (ENSSSAG00000052801) ITPR1 (ENSSSAG00000054019) ENSSSAG00000112671 setmar (ENSSSAG00000077574) lrrn1 (ENSSSAG00000098200) ENSSSAG00000077580 TRNT1 (ENSSSAG00000077584) arl6ip5a (ENSSSAG00000077595) FRMD4B (ENSSSAG00000077601) River trout MODERN SPECIES 5 ENSSTUG00000017723 adnpa (ENSSTUG00000017712) BCL2L1 (ENSSTUG00000017701) gata1a (ENSSTUG00000017690) HCFC1 (ENSSTUG00000017458) opn1sw2 (ENSSTUG00000017425) ENSSTUG00000017235 ENSSTUG00000017145 gnl3l (ENSSTUG00000017058) tfe3b (ENSSTUG00000017011) CXXC1 (ENSSTUG00000016765) mbd1b (ENSSTUG00000016736) ENSSTUG00000016732 ccdc120b (ENSSTUG00000016723) SRPK3 (ENSSTUG00000016695) comtb (ENSSTUG00000016606) ##23 grm6b (ENSSTUG00000016561) traip (ENSSTUG00000016538) mon1a (ENSSTUG00000016521) ENSSTUG00000016484 camkvb (ENSSTUG00000016452) SEMA3F (ENSSTUG00000015849) arl8bb (ENSSTUG00000015812) bhlhe40 (ENSSTUG00000015789) ITPR1 (ENSSTUG00000015338) setmar (ENSSTUG00000015300) lrrn1 (ENSSTUG00000015297) ENSSTUG00000015291 trnt1 (ENSSTUG00000015279) arl6ip5a (ENSSTUG00000015266) FRMD4B (ENSSTUG00000015084) Oncorhynchus ANCESTRAL SPECIES 1 ENSGT00940000158405.h ENSGT00940000160486.d.b ENSGT00940000164411.d ENSGT00530000063631.b.n.a.d ENSGT01090000260003.a.b.b.a.a.b.b.a.l.d ENSGT00940000166313.a.d ENSGT00940000161383.d.a.b ENSGT01030000234549.a.a.a.a.a.a ENSGT01030000234549.a.a.a.b.cb.a.b.a ENSGT00940000155877 ENSGT00940000157503.i.b.d ENSGT00940000166392.c.a ENSGT00950000183005.a.a.d ENSGT00940000154102.b.a.a.d ENSGT00940000157877.b.h.g ENSGT00940000155317.a.a.q.b ##23 ENSGT01030000234648.a.b.a.b.a.b.e ENSGT00980000202247 ENSGT00390000006665.a.a ENSGT00940000157842.b.e ENSGT00940000156468.f.d ENSGT00940000156703.e.a.a ENSGT00940000154861.n.a ENSGT00940000158384.d.d ENSGT00940000155071.C.e ENSGT00940000162663.c ENSGT00940000157154.d.f ENSGT01050000244882.b.c.a.a.c ENSGT00390000009678.h ENSGT00390000008631.a.o.a.b ENSGT01020000230354.A.a.a.d Rainbow trout MODERN SPECIES 8 ENSOMYG00000067327 adnpa (ENSOMYG00000017914) ENSOMYG00000017923 gata1a (ENSOMYG00000017940) ENSOMYG00000066542 ENSOMYG00000018008 ENSOMYG00000019621 opn1sw2 (ENSOMYG00000019627) ENSOMYG00000019730 gnl3l (ENSOMYG00000019850) tfe3b (ENSOMYG00000020367) cxxc1b (ENSOMYG00000020532) mbd1b (ENSOMYG00000020593) ccdc120b (ENSOMYG00000020609) ENSOMYG00000020776 comtb (ENSOMYG00000021878) ##23 grm6b (ENSOMYG00000021991) ENSOMYG00000075273 mon1a (ENSOMYG00000022263) ENSOMYG00000022319 camkvb (ENSOMYG00000022384) ENSOMYG00000022540 arl8bb (ENSOMYG00000022701) bhlhe40 (ENSOMYG00000022729) ITPR1 (ENSOMYG00000023613) ENSOMYG00000024717 setmar (ENSOMYG00000024725) lrrn1 (ENSOMYG00000024735) ENSOMYG00000024756 trnt1 (ENSOMYG00000024790) arl6ip5a (ENSOMYG00000024815) Oncorhynchus_a ANCESTRAL SPECIES 3 ENSGT00940000158405.h ENSGT00940000160486.d.b ENSGT00940000164411.d ENSGT00530000063631.b.n.a.d ENSGT01090000260003.a.b.b.a.a.b.b.a.l.d ENSGT00940000166313.a.d ENSGT00940000161383.d.a.b ENSGT01030000234549.a.a.a.a.a.a ENSGT01030000234549.a.a.a.b.cb.a.b.a ENSGT00940000155877 ENSGT00940000157503.i.b.d ENSGT00940000166392.c.a ENSGT00950000183005.a.a.d ENSGT00940000154102.b.a.a.d ENSGT00940000157877.b.h.g ENSGT00940000155317.a.a.q.b ##23 ENSGT01030000234648.a.b.a.b.a.b.e ENSGT00980000202247 ENSGT00390000006665.a.a ENSGT00940000157842.b.e ENSGT00940000156468.f.d ENSGT00940000156703.e.a.a ENSGT00940000154861.n.a ENSGT00940000158384.d.d ENSGT00940000155071.C.e ENSGT00940000162663.c ENSGT00940000157154.d.f ENSGT01050000244882.b.c.a.a.c ENSGT00390000009678.h ENSGT00390000008631.a.o.a.b ENSGT01020000230354.A.a.a.d Chinook salmon MODERN SPECIES 11 fam83d (ENSOTSG00005043143) MAFB (ENSOTSG00005043144) ENSOTSG00005043145 adnpa (ENSOTSG00005043146) BCL2L1 (ENSOTSG00005043147) gata1a (ENSOTSG00005043148) HCFC1 (ENSOTSG00005043149) opn1sw2 (ENSOTSG00005043152) ENSOTSG00005043155 gnl3l (ENSOTSG00005043179) tfe3b (ENSOTSG00005043372) cxxc1b (ENSOTSG00005043374) mbd1b (ENSOTSG00005043437) ccdc120b (ENSOTSG00005043438) SRPK3 (ENSOTSG00005043456) comtb (ENSOTSG00005045196) ##23 grm6b (ENSOTSG00005045198) ENSOTSG00005045212 mon1a (ENSOTSG00005045213) MST1R (ENSOTSG00005045214) camkvb (ENSOTSG00005000406) SEMA3F (ENSOTSG00005000749) arl8bb (ENSOTSG00005001141) bhlhe40 (ENSOTSG00005001151) ITPR1 (ENSOTSG00005001228) setmar (ENSOTSG00005001878) lrrn1 (ENSOTSG00005001879) ENSOTSG00005001880 trnt1 (ENSOTSG00005001883) arl6ip5a (ENSOTSG00005001888) FRMD4B (ENSOTSG00005001893) Coho salmon MODERN SPECIES fam83d (ENSOKIG00005014522) MAFB (ENSOKIG00005014519) adnpa (ENSOKIG00005014512) BCL2L1 (ENSOKIG00005014496) gata1a (ENSOKIG00005014483) HCFC1 (ENSOKIG00005014244) ENSOKIG00005014220 opn1sw2 (ENSOKIG00005014210) ENSOKIG00005014066 gnl3l (ENSOKIG00005013946) tfe3b (ENSOKIG00005013920) cxxc1b (ENSOKIG00005013660) mbd1b (ENSOKIG00005013620) ccdc120b (ENSOKIG00005013610) SRPK3 (ENSOKIG00005013561) comtb (ENSOKIG00005013536) ##23 grm6b (ENSOKIG00005013474) ENSOKIG00005013355 mon1a (ENSOKIG00005013313) MST1R (ENSOKIG00005013256) ENSOKIG00005013248 ENSOKIG00005013243 camkvb (ENSOKIG00005013204) SEMA3F (ENSOKIG00005013005) arl8bb (ENSOKIG00005012969) bhlhe40 (ENSOKIG00005012956) ITPR1 (ENSOKIG00005012584) setmar (ENSOKIG00005012520) lrrn1 (ENSOKIG00005012515) ENSOKIG00005012512 trnt1 (ENSOKIG00005012500) Huchen MODERN SPECIES 42 MAFB (ENSHHUG00000028885) ENSHHUG00000000011 adnpa (ENSHHUG00000000079) BCL2L1 (ENSHHUG00000000089) gata1a (ENSHHUG00000000102) HCFC1 (ENSHHUG00000000123) opn1sw2 (ENSHHUG00000000400) ENSHHUG00000000425 ENSHHUG00000000749 gnl3l (ENSHHUG00000001091) tfe3b (ENSHHUG00000001218) cxxc1b (ENSHHUG00000001362) mbd1b (ENSHHUG00000001603) ccdc120b (ENSHHUG00000001636) SRPK3 (ENSHHUG00000001646) comtb (ENSHHUG00000002247) ##23 grm6b (ENSHHUG00000002259) ENSHHUG00000002603 mon1a (ENSHHUG00000002609) ENSHHUG00000002620 ENSHHUG00000002638 camkvb (ENSHHUG00000002647) SEMA3F (ENSHHUG00000002663) Salmoninae ANCESTRAL SPECIES 213 ENSGT00650000093320.a.b.b.b ENSGT00940000163875.a.a ENSGT00940000165736 ENSGT00950000183119.a.b ENSGT00950000182852.B.b ENSGT00950000182958.b.a.a.b.f ENSGT00940000155343.a.a ENSGT00940000158400 ENSGT00940000158156.b.a.f ENSGT00940000158549 ENSGT00940000155311.C.c ENSGT00940000164248.b.b ENSGT00940000157877.b.g ENSGT00390000012692 ENSGT00940000156963.a.b ENSGT00940000155317.a.a.r ##23 ENSGT00390000002062 ENSGT01030000234648.a.b.a.b.a.a ENSGT00940000160485.k ENSGT00390000005780.a ENSGT00390000018078 ENSGT00940000157571 ENSGT00940000165528 ENSGT00940000158963.b.b.d ENSGT00940000163427.c ENSGT00950000182827.B ENSGT00390000011863.c ENSGT00940000155869 ENSGT00940000156776.c ENSGT01050000244850.A.a.o.a.e ENSGT00940000164289.a.d Salmoninae_a ANCESTRAL SPECIES 26 ENSGT00940000163875.a.a ENSGT00940000165736 ENSGT00950000183119.a.b ENSGT00950000182852.B.b ENSGT00950000182958.b.a.a.b.f ENSGT00940000155343.a.a ENSGT00940000155343.b ENSGT00940000158400 ENSGT00940000158156.b.a.f ENSGT00940000158549 ENSGT00940000155311.C.c ENSGT00940000164248.b.b ENSGT00940000157877.b.g ENSGT00390000012692 ENSGT00940000156963.a.b ENSGT00940000155317.a.a.r ##23 ENSGT00990000211545.I ENSGT00390000002062 ENSGT01030000234648.a.b.a.b.a.a ENSGT00940000160485.k ENSGT00390000005780.a ENSGT00390000018078 ENSGT00940000157571 ENSGT00940000165528 ENSGT00940000158963.b.b.d ENSGT00940000163427.c ENSGT00950000182827.B ENSGT00390000011863.c ENSGT00940000155869 ENSGT01050000244850.A.a.o.a.f ENSGT00940000164289.a.c Oncorhynchus ANCESTRAL SPECIES 7 ENSGT00650000093320.a.b.b.b ENSGT00940000163875.a.a ENSGT00940000165736 ENSGT00950000183119.a.b ENSGT00950000182852.B.b ENSGT00950000182958.b.a.a.b.e.a ENSGT00940000155343.a.a ENSGT00940000158400 ENSGT00940000158156.b.a.f ENSGT00940000158549 ENSGT00940000155311.C.c ENSGT00940000164248.b.b ENSGT00940000157877.b.g ENSGT00390000012692 ENSGT00940000156963.a.b ENSGT00940000155317.a.a.r ##23 ENSGT00990000211545.I ENSGT00390000002062 ENSGT01030000234648.a.b.a.b.a.a ENSGT00940000160485.k ENSGT00390000005780.a ENSGT00390000018078 ENSGT00940000157571 ENSGT00940000165528 ENSGT00940000158963.b.b.d ENSGT00940000163427.c ENSGT00950000182827.B ENSGT00390000011863.c ENSGT00940000155869 ENSGT01050000244850.A.a.o.a.f ENSGT00940000164289.a.c Oncorhynchus_a ANCESTRAL SPECIES 9 ENSGT00650000093320.a.b.b.b ENSGT00940000163875.a.a ENSGT00940000165736 ENSGT00950000183119.a.b ENSGT00950000182852.B.b ENSGT00950000182958.b.a.a.b.e.a ENSGT00940000155343.a.a ENSGT00940000158400 ENSGT00940000158156.b.a.f ENSGT00940000158549 ENSGT00940000155311.C.c ENSGT00940000164248.b.b ENSGT00940000157877.b.g ENSGT00390000012692 ENSGT00940000156963.a.b ENSGT00940000155317.a.a.r ##23 ENSGT00990000211545.I ENSGT00390000002062 ENSGT01030000234648.a.b.a.b.a.a ENSGT00940000160485.k ENSGT00390000005780.a ENSGT00390000018078 ENSGT00940000157571 ENSGT00940000165528 ENSGT00940000158963.b.b.d ENSGT00950000182827.B ENSGT00390000011863.c ENSGT00940000155869 ENSGT01050000244850.A.a.o.a.f ENSGT00940000164289.a.c ENSGT00720000108868.f Chinook salmon MODERN SPECIES 14 ENSOTSG00005003176 GGT7 (ENSOTSG00005003182) ENSOTSG00005003216 ENSOTSG00005003218 snai1b (ENSOTSG00005003220) samhd1 (ENSOTSG00005003231) ENSOTSG00005003620 KBTBD12 (ENSOTSG00005003623) ENSOTSG00005003626 parapinopsina (ENSOTSG00005003628) ENSOTSG00005003630 ENSOTSG00005003633 SRPK3 (ENSOTSG00005003664) tsr2 (ENSOTSG00005007514) CDK16 (ENSOTSG00005007515) comta (ENSOTSG00005007911) ##23 ENSOTSG00005007912 abt1 (ENSOTSG00005007913) grm6a (ENSOTSG00005007914) USP11 (ENSOTSG00005007925) zgc:86609 (ENSOTSG00005011090) uxt (ENSOTSG00005011091) ENSOTSG00005011092 ENSOTSG00005011094 otud5a (ENSOTSG00005011095) slc35a2 (ENSOTSG00005011435) bcap31 (ENSOTSG00005011436) slc6a8 (ENSOTSG00005011442) plxna3 (ENSOTSG00005012512) ptpn18 (ENSOTSG00005012519) gripap1 (ENSOTSG00005012537) Coho salmon MODERN SPECIES 16 ENSOKIG00005014284 capza1b (ENSOKIG00005014677) cttnbp2nlb (ENSOKIG00005015382) ENSOKIG00005015407 kcnd3 (ENSOKIG00005015538) ENSOKIG00005015555 ENSOKIG00005015561 ddx20 (ENSOKIG00005015610) atp6ap1lb (ENSOKIG00005015875) B4GALT3 (ENSOKIG00005015885) bgnb (ENSOKIG00005015897) ENSOKIG00005015901 SRPK3 (ENSOKIG00005015985) tsr2 (ENSOKIG00005016773) CDK16 (ENSOKIG00005016915) comta (ENSOKIG00005018638) ##23 ENSOKIG00005018646 abt1 (ENSOKIG00005018653) grm6a (ENSOKIG00005018665) USP11 (ENSOKIG00005018744) zgc:86609 (ENSOKIG00005018996) uxt (ENSOKIG00005019052) ENSOKIG00005019068 ENSOKIG00005019078 ENSOKIG00005019082 otud5a (ENSOKIG00005019120) slc35a2 (ENSOKIG00005019267) bcap31 (ENSOKIG00005019304) slc6a8 (ENSOKIG00005019356) plxna3 (ENSOKIG00005019794) ptpn18 (ENSOKIG00005022692) Rainbow trout MODERN SPECIES 7 cttnbp2nlb (ENSOMYG00000053702) ENSOMYG00000033405 ENSOMYG00000065458 kcnd3 (ENSOMYG00000054558) ENSOMYG00000052073 ENSOMYG00000050077 ddx20 (ENSOMYG00000033653) ENSOMYG00000070426 ENSOMYG00000033995 ENSOMYG00000034082 ENSOMYG00000054349 ENSOMYG00000034378 tsr2 (ENSOMYG00000034541) ENSOMYG00000034674 ENSOMYG00000049357 comta (ENSOMYG00000034879) ##23 ENSOMYG00000034885 abt1 (ENSOMYG00000034903) grm6a (ENSOMYG00000058364) ENSOMYG00000035226 zgc:86609 (ENSOMYG00000038259) uxt (ENSOMYG00000038408) ENSOMYG00000038424 ENSOMYG00000038448 otud5a (ENSOMYG00000038621) pim2 (ENSOMYG00000070574) slc35a2 (ENSOMYG00000039080) bcap31 (ENSOMYG00000039088) ENSOMYG00000054617 ENSOMYG00000049752 ENSOMYG00000072926 Salmo ANCESTRAL SPECIES 4 ENSGT00940000163875.a.a ENSGT00940000165736 ENSGT00950000183119.a.b ENSGT00950000182852.B.b ENSGT00950000182958.b.a.a.b.f ENSGT00940000155343.a.a ENSGT00940000155343.b ENSGT00940000158400 ENSGT00940000158156.b.a.f ENSGT00940000158549 ENSGT00940000155311.C.c ENSGT00940000164248.b.b ENSGT00940000157877.b.g ENSGT00390000012692 ENSGT00940000156963.a.b ENSGT00940000155317.a.a.r ##23 ENSGT00990000211545.I ENSGT00390000002062 ENSGT01030000234648.a.b.a.b.a.a ENSGT00940000160485.k ENSGT00390000005780.a ENSGT00390000018078 ENSGT00940000157571 ENSGT00940000165528 ENSGT00940000158963.b.b.d ENSGT00940000163427.c ENSGT00950000182827.B ENSGT00390000011863.c ENSGT00940000155869 ENSGT00940000156776.c.f ENSGT01050000244850.A.a.o.a.f River trout MODERN SPECIES 23 tlr9 (ENSSTUG00000044046) ENSSTUG00000044055 capza1b (ENSSTUG00000044276) cttnbp2nlb (ENSSTUG00000045686) ENSSTUG00000045749 ENSSTUG00000047092 ENSSTUG00000047096 KCND3 (ENSSTUG00000047097) ddx20 (ENSSTUG00000047111) atp6ap1lb (ENSSTUG00000047237) B4GALT3 (ENSSTUG00000047239) bgnb (ENSSTUG00000047245) SRPK3 (ENSSTUG00000047250) tsr2 (ENSSTUG00000047276) CDK16 (ENSSTUG00000047329) comta (ENSSTUG00000048934) ##23 ENSSTUG00000048941 abt1 (ENSSTUG00000048946) grm6a (ENSSTUG00000048975) USP11 (ENSSTUG00000049221) zgc:86609 (ENSSTUG00000049556) uxt (ENSSTUG00000049561) ENSSTUG00000049564 ENSSTUG00000049565 otud5a (ENSSTUG00000049567) pim2 (ENSSTUG00000049580) slc35a2 (ENSSTUG00000049583) bcap31 (ENSSTUG00000049584) slc6a8 (ENSSTUG00000049592) ENSSTUG00000049669 plxna3 (ENSSTUG00000049704) Atlantic salmon MODERN SPECIES 4 ENSSSAG00000114365 cttnbp2nlb (ENSSSAG00000089724) ENSSSAG00000075682 ENSSSAG00000099746 ENSSSAG00000103451 kcnd3 (ENSSSAG00000115399) ENSSSAG00000122210 ddx20 (ENSSSAG00000076815) ENSSSAG00000076805 b4galt3 (ENSSSAG00000076803) bgn (ENSSSAG00000076802) ENSSSAG00000107407 ENSSSAG00000076726 tsr2 (ENSSSAG00000076713) ENSSSAG00000076397 comta (ENSSSAG00000076380) ##23 abt1 (ENSSSAG00000093372) grm6a (ENSSSAG00000117835) ENSSSAG00000074048 POB (ENSSSAG00000074008) uxt (ENSSSAG00000073999) ENSSSAG00000073997 ENSSSAG00000073995 otud5a (ENSSSAG00000073981) pim2 (ENSSSAG00000090531) slc35a2 (ENSSSAG00000073975) bcap31 (ENSSSAG00000073971) slc6a8 (ENSSSAG00000073066) ENSSSAG00000099811 plxna3 (ENSSSAG00000117654) ptpn18 (ENSSSAG00000072816) Huchen MODERN SPECIES 658 ENSHHUG00000003651 SRPK3 (ENSHHUG00000003667) tsr2 (ENSHHUG00000004082) CDK16 (ENSHHUG00000004095) comta (ENSHHUG00000004607) ##23 abt1 (ENSHHUG00000004632) grm6a (ENSHHUG00000004662) USP11 (ENSHHUG00000005084) zgc:86609 (ENSHHUG00000005253) uxt (ENSHHUG00000005290) ENSHHUG00000005322 ENSHHUG00000005325 otud5a (ENSHHUG00000005328) pim2 (ENSHHUG00000005361) slc35a2 (ENSHHUG00000005374) bcap31 (ENSHHUG00000005381) slc6a8 (ENSHHUG00000005394) plxna3 (ENSHHUG00000005822) ptpn18 (ENSHHUG00000007415) gripap1 (ENSHHUG00000007452) Spotted gar MODERN SPECIES 647 zgc:162200 (ENSLOCG00000014473) nt5dc2 (ENSLOCG00000014477) FAM107A (ENSLOCG00000014487) renbp (ENSLOCG00000014488) ENSLOCG00000014494 ptpn18 (ENSLOCG00000014499) MON1B (ENSLOCG00000014503) gripap1 (ENSLOCG00000014510) kcnd1 (ENSLOCG00000014523) ENSLOCG00000014533 ENSLOCG00000014538 alas2 (ENSLOCG00000014541) fam50a (ENSLOCG00000014548) ENSLOCG00000014554 ENSLOCG00000014555 comtb (ENSLOCG00000014559) ##23 abt1 (ENSLOCG00000014561) grm6a (ENSLOCG00000014563) ENSLOCG00000014568 zgc:86609 (ENSLOCG00000014569) uxt (ENSLOCG00000014570) ELK1 (ENSLOCG00000014572) ENSLOCG00000017978 otud5a (ENSLOCG00000014573) pim2 (ENSLOCG00000014577) slc35a2 (ENSLOCG00000014583) bcap31 (ENSLOCG00000014585) slc6a8 (ENSLOCG00000014590) PNCK (ENSLOCG00000014603) plxna3 (ENSLOCG00000014612) idh3g (ENSLOCG00000014632) Reedfish MODERN SPECIES 2 ENSECRG00000007589 FGD1 (ENSECRG00000007611) gnl3l (ENSECRG00000007644) mecp2 (ENSECRG00000007685) IRAK1 (ENSECRG00000007760) ENSECRG00000007782 TMEM187 (ENSECRG00000007796) HCFC1 (ENSECRG00000007822) si:dkey-13a21.4 (ENSECRG00000007855) cdk20 (ENSECRG00000007865) gata1a (ENSECRG00000007886) ENSECRG00000007908 ENSECRG00000007966 tsr2 (ENSECRG00000008057) CDK16 (ENSECRG00000008102) comtb (ENSECRG00000008178) ##23 abt1 (ENSECRG00000008206) ENSECRG00000008237 ENSECRG00000008328 ENSECRG00000008668 zgc:86609 (ENSECRG00000008697) uxt (ENSECRG00000008724) ENSECRG00000008741 ENSECRG00000008752 otud5a (ENSECRG00000008757) pim2 (ENSECRG00000008775) pim2 (ENSECRG00000008783) slc35a2 (ENSECRG00000008796) bcap31 (ENSECRG00000008809) slc6a8 (ENSECRG00000008845) ENSECRG00000008903 Euteleostomi ANCESTRAL SPECIES ENSGT00940000155317.a.b ##23 Actinopterygii ANCESTRAL SPECIES 30 ENSGT00390000005922.b ENSGT00940000159225 ENSGT00390000010712 ENSGT00950000183362 ENSGT00940000163777.b ENSGT00940000164725 ENSGT00940000165118 ENSGT01020000230605 ENSGT00940000164468 ENSGT00940000164983 ENSGT01030000235223 ENSGT01060000248588.a.c.a ENSGT00940000158371 ENSGT00950000186323 ENSGT00390000002137 ENSGT00940000155317.a.b ##23 ENSGT00940000155521 ENSGT00940000160403 ENSGT00940000153137.a.b ENSGT00940000160738 ENSGT00950000183201.b.b.b.a ENSGT00950000182915.a.a.a ENSGT00940000156526.a ENSGT00390000002781 ENSGT00390000006124 ENSGT00940000158554 ENSGT00940000178460 ENSGT00940000157465 ENSGT01050000244840.A.b.a ENSGT00390000015484.i ENSGT00940000155437 Neopterygii ANCESTRAL SPECIES 53 ENSGT00940000164725.a.b ENSGT00940000164725.a.a.a.a ENSGT00940000165118.b ENSGT01020000230605 ENSGT00940000165118.a ENSGT00940000164468.a.a.b.a.a.a.a ENSGT00940000164983 ENSGT00940000163777.a ENSGT00940000159910 ENSGT01060000248588.a.c.a ENSGT00940000158371 ENSGT00950000186323 ENSGT00940000166070 ENSGT00940000161122 ENSGT00390000002137 ENSGT00940000155317.a.b ##23 ENSGT00940000160403 ENSGT00940000153137.a.b ENSGT00940000160738 ENSGT00950000183201.b.b.b.a ENSGT00950000182915.a.a.a ENSGT00940000156526.a ENSGT00390000002781 ENSGT00390000006124 ENSGT00940000158554 ENSGT00940000178460 ENSGT00940000157465 ENSGT00940000155437 ENSGT00530000063860.a ENSGT00940000164810 ENSGT00940000158869 Osteoglossocephalai ANCESTRAL SPECIES 163 ENSGT00940000164468.a.a.b.b ENSGT00940000164468.a.b.a.b ENSGT00940000164468.a.b.b ENSGT00940000164983.c.a ENSGT00940000165118.a.a.a.a.b.b ENSGT00940000164468.a.a.b.a.a.a.a ENSGT00940000164983.d ENSGT00940000163777.a ENSGT00940000159910 ENSGT01030000235223 ENSGT01060000248588.a.c.a ENSGT00940000158371 ENSGT00950000186323 ENSGT00940000166070 ENSGT00390000002137 ENSGT00940000155317.a.b ##23 ENSGT00940000160403 ENSGT00940000153137.a.b ENSGT00940000160738 ENSGT00950000183201.b.b.b.a ENSGT00950000182915.a.a.a ENSGT00940000156526.a ENSGT00390000002781 ENSGT00390000006124 ENSGT00940000158554 ENSGT00940000178460 ENSGT00940000157465 ENSGT01050000244840.A.b.a ENSGT00390000015484.i ENSGT00940000155521.a.a Clupeocephala ANCESTRAL SPECIES 541 ENSGT00390000011368 ENSGT00940000159958 ENSGT00950000183159.a.v.b ENSGT00940000155317.a.b ##23 Otomorpha ANCESTRAL SPECIES 125 ENSGT00390000012736 ENSGT00940000156418 ENSGT00940000156495 ENSGT00390000000470.n ENSGT00390000005639.a.a.m ENSGT00390000010628.b ENSGT00530000063586.b.c.b ENSGT00940000154372.a.a.a ENSGT00940000154372.a.b.b ENSGT00940000155988.d ENSGT00390000012346 ENSGT00940000155372 ENSGT00390000011368 ENSGT00940000159958.d ENSGT00950000183159.a.v.b ENSGT00940000155317.a.b ##23 ENSGT00940000160403 ENSGT00940000160738 ENSGT00950000183201.b.b.b.a ENSGT00950000182915.a.a.a ENSGT00940000156526.a ENSGT00390000002781 ENSGT00390000006124 Clupeiformes ANCESTRAL SPECIES 20 ENSGT00950000182815.a.a.a.a.b ENSGT00940000160064.a.b ENSGT00940000155980.C ENSGT00940000156333 ENSGT00390000000973.a.a ENSGT00390000010628.b ENSGT00530000063586.b.c.b ENSGT00940000154372.a.a.a ENSGT00940000154372.a.b.b ENSGT00940000155988.d ENSGT00390000012346 ENSGT00940000155372 ENSGT00390000011368 ENSGT00940000159958.d ENSGT00950000183159.a.v.b ENSGT00940000155317.a.b ##23 ENSGT00940000160403 ENSGT00940000160738 ENSGT00950000183201.b.b.b.a ENSGT00950000182915.a.a.a ENSGT00940000156526.a ENSGT00390000002781 ENSGT01030000237568 ENSGT00920000149138 ENSGT00390000016876 ENSGT00390000002313 ENSGT00390000006413 ENSGT00390000014635 ENSGT00390000006550 ENSGT00940000163251.b.i ENSGT00940000163251.b.j Denticle herring MODERN SPECIES 9 unc5a (ENSDCDG00000025888) atoh1b (ENSDCDG00000028264) ENSDCDG00000028265 DDX41 (ENSDCDG00000028280) FAM193B (ENSDCDG00000005653) TAPT1 (ENSDCDG00000006039) prom1a (ENSDCDG00000008950) ENSDCDG00000009756 anxa5a (ENSDCDG00000009802) bbs7 (ENSDCDG00000010792) ccna2 (ENSDCDG00000010811) tmem33 (ENSDCDG00000010814) phox2bb (ENSDCDG00000010823) LIMCH1 (ENSDCDG00000010937) ENSDCDG00000013771 ENSDCDG00000013772 ##23 PCDH12 (ENSDCDG00000013775) LTC4S (ENSDCDG00000013776) MAML1 (ENSDCDG00000013778) canx (ENSDCDG00000013790) mgat4b (ENSDCDG00000014646) sqstm1 (ENSDCDG00000015336) POLR1A (ENSDCDG00000015349) ptcd3 (ENSDCDG00000015393) immt (ENSDCDG00000015430) rnf103 (ENSDCDG00000016994) abhd18 (ENSDCDG00000016997) trappc11 (ENSDCDG00000017017) ENSDCDG00000017048 ENSDCDG00000017056 STOX2 (ENSDCDG00000017061) Atlantic herring MODERN SPECIES 12 ENSCHAG00000017329 atoh1b (ENSCHAG00000017347) ENSCHAG00000017360 DDX41 (ENSCHAG00000017374) FAM193B (ENSCHAG00000017522) TAPT1 (ENSCHAG00000017540) prom1a (ENSCHAG00000018555) fgfbp2a (ENSCHAG00000020069) ENSCHAG00000020097 anxa5a (ENSCHAG00000020107) bbs7 (ENSCHAG00000020200) ccna2 (ENSCHAG00000020323) tmem33 (ENSCHAG00000020332) phox2bb (ENSCHAG00000020341) ENSCHAG00000020350 ENSCHAG00000020368 ##23 PCDH12 (ENSCHAG00000020375) ENSCHAG00000020383 ENSCHAG00000020469 MAML1 (ENSCHAG00000020475) mgat4b (ENSCHAG00000020498) sqstm1 (ENSCHAG00000020888) ENSCHAG00000021000 POLR1A (ENSCHAG00000021078) ptcd3 (ENSCHAG00000023293) immt (ENSCHAG00000023348) rnf103 (ENSCHAG00000023654) abhd18 (ENSCHAG00000023675) tmco6 (ENSCHAG00000023793) hars (ENSCHAG00000023816) ENSCHAG00000023908 Otophysi ANCESTRAL SPECIES 10 ENSGT00940000160863 ENSGT01000000220275 ENSGT00390000011725.c ENSGT00390000010318 ENSGT00940000156736.c.a ENSGT00740000115581.f ENSGT00940000160999 ENSGT00940000159900 ENSGT00390000016928.d ENSGT00940000153713.B.c ENSGT00940000158505.n.a ENSGT00940000157622.b ENSGT00940000154495.b.a.a.b ENSGT00940000159958.d ENSGT00950000183159.a.v.b ENSGT00940000155317.a.b ##23 ENSGT00940000160403 ENSGT00940000160738 ENSGT00950000183201.b.b.b.a ENSGT00950000182915.a.a.a ENSGT00940000156526.a ENSGT00390000002781 ENSGT00390000006124 ENSGT00950000182881.a.b.a.b.z.b ENSGT00940000153662.A ENSGT00920000149138 ENSGT00390000016876 ENSGT00390000002313 ENSGT00390000006413 ENSGT00940000161050 ENSGT00950000182810.B.a Characiphysae ANCESTRAL SPECIES 21 ENSGT00940000160863 ENSGT01000000220275 ENSGT00390000011725.c ENSGT00390000010318 ENSGT00940000156736.c.a ENSGT00740000115581.f ENSGT00940000160999 ENSGT00940000159900 ENSGT00390000016928.d ENSGT00940000153713.B.c ENSGT00940000158505.n.a ENSGT00940000157622.b ENSGT00940000154495.b.a.a.b ENSGT00940000159958.d ENSGT00950000183159.a.v.b.a ENSGT00940000155317.a.b ##23 ENSGT00940000160403 ENSGT00940000160738 ENSGT00950000183201.b.b.b.a ENSGT00950000182915.a.a.a ENSGT00940000156526.a ENSGT00390000002781 ENSGT00390000006124 ENSGT00950000182881.a.b.a.b.z.b ENSGT00940000153662.A ENSGT00920000149138 ENSGT00390000016876 ENSGT00390000002313 ENSGT00390000006413 ENSGT00940000161050 ENSGT00950000182810.B.a.pb Characiphysae_b ANCESTRAL SPECIES 16 ENSGT00940000160863 ENSGT01000000220275 ENSGT00390000011725.c ENSGT00390000010318 ENSGT00940000156736.c.a ENSGT00740000115581.f ENSGT00940000160999 ENSGT00940000159900 ENSGT00390000016928.d ENSGT00940000153713.B.c ENSGT00940000158505.n.a ENSGT00940000157622.b ENSGT00940000154495.b.a.a.b ENSGT00940000159958.d ENSGT00950000183159.a.v.b.a ENSGT00940000155317.a.b ##23 ENSGT00940000160403 ENSGT00940000160738 ENSGT00950000183201.b.b.b.a ENSGT00950000182915.a.a.a ENSGT00940000156526.a ENSGT00390000002781 ENSGT00390000006124 ENSGT00950000182881.a.b.a.b.z.b ENSGT00940000153662.A ENSGT00920000149138 ENSGT00390000016876 ENSGT00390000002313 ENSGT00390000006413 ENSGT00940000161050 ENSGT00950000182810.B.a.pb Characoidei ANCESTRAL SPECIES 47 ENSGT00940000160863 ENSGT01000000220275 ENSGT00390000011725.c ENSGT00390000010318 ENSGT00940000156736.c.a ENSGT00740000115581.f ENSGT00940000160999 ENSGT00940000159900 ENSGT00390000016928.d ENSGT00940000153713.B.c ENSGT00940000158505.n.a ENSGT00940000157622.b ENSGT00940000154495.b.a.a.b ENSGT00940000159958.d ENSGT00950000183159.a.v.b.a ENSGT00940000155317.a.b ##23 ENSGT00940000160403 ENSGT00940000160738 ENSGT00950000183201.b.b.b.a ENSGT00950000182915.a.a.a ENSGT00940000156526.a ENSGT00390000002781 ENSGT00390000006124 ENSGT00950000182881.a.b.a.b.z.b ENSGT00940000153662.A ENSGT00920000149138 ENSGT00390000016876 ENSGT00390000002313 ENSGT00390000006413 ENSGT00940000161050 ENSGT00950000182810.B.a.pb Red-bellied piranha MODERN SPECIES 268 ENSPNAG00000022938 selenot2 (ENSPNAG00000022999) rnf4 (ENSPNAG00000023046) fgfrl1a (ENSPNAG00000023061) ENSPNAG00000023093 ENSPNAG00000023115 spon2b (ENSPNAG00000023137) WFS1 (ENSPNAG00000023188) JAKMIP1 (ENSPNAG00000023245) rtn4rl2b (ENSPNAG00000023259) ENSPNAG00000023268 slc43a3b (ENSPNAG00000003766) smtnl1 (ENSPNAG00000023302) phox2bb (ENSPNAG00000023315) ENSPNAG00000023342 ENSPNAG00000023357 ##23 PCDH12 (ENSPNAG00000023365) Mexicana tetra MODERN SPECIES 16 fgfrl1a (ENSAMXG00000033222) ENSAMXG00000031655 ENSAMXG00000029316 spon2b (ENSAMXG00000042894) WFS1 (ENSAMXG00000043676) ENSAMXG00000029800 JAKMIP1 (ENSAMXG00000007587) rtn4rl2b (ENSAMXG00000036104) ENSAMXG00000029059 ENSAMXG00000044034 slc43a3b (ENSAMXG00000007555) smtnl1 (ENSAMXG00000032862) phox2bb (ENSAMXG00000043803) ENSAMXG00000036476 ENSAMXG00000037418 ENSAMXG00000029657 ##23 PCDH12 (ENSAMXG00000015011) LTC4S (ENSAMXG00000039412) MAML1 (ENSAMXG00000031783) ENSAMXG00000042710 canx (ENSAMXG00000015162) ENSAMXG00000030588 ENSAMXG00000042248 mgat4b (ENSAMXG00000031451) sqstm1 (ENSAMXG00000011526) mrnip (ENSAMXG00000035662) tcirg1b (ENSAMXG00000011532) prpf19 (ENSAMXG00000011547) ENSAMXG00000011553 ENSAMXG00000011559 ptcd3 (ENSAMXG00000011570) Channel catfish MODERN SPECIES 27 selenot2 (ENSIPUG00000009138) Rnf4 (ENSIPUG00000009170) FGFRL1 (ENSIPUG00000009229) ENSIPUG00000009263 si:ch211-255i20.3 (ENSIPUG00000009306) spon2b (ENSIPUG00000009340) Wfs1 (ENSIPUG00000009368) JAKMIP1 (ENSIPUG00000009398) rtn4rl2b (ENSIPUG00000009468) ENSIPUG00000009473 ENSIPUG00000009577 slc43a3b (ENSIPUG00000009499) smtnl1 (ENSIPUG00000009601) phox2bb (ENSIPUG00000009610) ENSIPUG00000009620 ENSIPUG00000009629 ##23 ENSIPUG00000009653 pcdh12 (ENSIPUG00000009669) Ltc4s (ENSIPUG00000009679) maml1 (ENSIPUG00000012722) canx (ENSIPUG00000012736) mgat4b (ENSIPUG00000012887) sqstm1 (ENSIPUG00000013021) c8h5orf45 (ENSIPUG00000012981) tcirg1 (ENSIPUG00000013058) prpf19 (ENSIPUG00000013084) polr1a (ENSIPUG00000013174) ptcd3 (ENSIPUG00000013271) Immt (ENSIPUG00000013371) Rnf103 (ENSIPUG00000013447) mxd3 (ENSIPUG00000013474) Euteleosteomorpha ANCESTRAL SPECIES 149 ENSGT00390000012736 ENSGT00940000156418 ENSGT00940000156495 ENSGT00390000000470.n ENSGT00390000005639.a.a ENSGT00390000010628.b ENSGT00530000063586.b.c.b ENSGT00940000154372.a.a.a ENSGT00940000154372.a.b.b ENSGT00940000155988.d ENSGT00940000155372 ENSGT00390000012346 ENSGT00390000011368 ENSGT00940000159958 ENSGT00950000183159.a.v.b ENSGT00940000155317.a.b ##23 Acanthomorphata ANCESTRAL SPECIES 73 ENSGT00940000170113 ENSGT00940000156418 ENSGT00940000156495 ENSGT00390000000470.n ENSGT00390000005639.a.a ENSGT00390000010628.b ENSGT00530000063586.b.c.b ENSGT00940000154372.a.a.a ENSGT00940000154372.a.b.b ENSGT00940000155988.d ENSGT00940000155372 ENSGT00390000012346 ENSGT00390000011368 ENSGT00940000159958 ENSGT00950000183159.a.v.b ENSGT00940000155317.a.b ##23 ENSGT00950000183135.B.a.b ENSGT00940000166497 ENSGT00940000159651 ENSGT00940000167002 ENSGT00940000164405 ENSGT00940000165256 ENSGT00940000156842 ENSGT00390000016264 ENSGT00390000010494 ENSGT00940000162309 ENSGT00390000008984 ENSGT00940000167088 ENSGT00390000008458 ENSGT00940000157323 ENSGT00950000183055.b.a Euacanthomorphacea ANCESTRAL SPECIES 10 ENSGT00940000170113 ENSGT00940000156418 ENSGT00940000156495 ENSGT00390000000470.n ENSGT00390000005639.a.a ENSGT00390000010628.b ENSGT00530000063586.b.c.b ENSGT00940000154372.a.a.a ENSGT00940000154372.a.b.b ENSGT00940000155988.d ENSGT00940000155372 ENSGT00390000012346 ENSGT00390000011368 ENSGT00940000159958 ENSGT00950000183159.a.v.b ENSGT00940000155317.a.b ##23 ENSGT00940000155569.a.a.f ENSGT00950000183135.B.a.b ENSGT00940000166497 ENSGT00940000159651 ENSGT00940000167002 ENSGT00940000164405 ENSGT00940000165256 ENSGT00940000156842 ENSGT00390000016264 ENSGT00390000010494 ENSGT00940000162309 ENSGT00390000008984 ENSGT00940000167088 ENSGT00390000008458 ENSGT00940000157323 Percomorphaceae ANCESTRAL SPECIES 11 ENSGT00940000170113 ENSGT00940000156418 ENSGT00940000156495 ENSGT00390000000470.n ENSGT00390000005639.a.a ENSGT00390000010628.b ENSGT00530000063586.b.c.b ENSGT00940000154372.a.a.a ENSGT00940000154372.a.b.b ENSGT00940000155988.d ENSGT00940000155372 ENSGT00390000012346 ENSGT00390000011368 ENSGT00940000159958 ENSGT00950000183159.a.v.b ENSGT00940000155317.a.b ##23 ENSGT00940000155569.a.a.f ENSGT00950000183135.B.a.b ENSGT00940000166497 ENSGT00940000159651 ENSGT00940000167002 ENSGT00940000164405 ENSGT00940000165256 ENSGT00940000156842 ENSGT00940000177064 ENSGT00940000175879 ENSGT00390000016264 ENSGT00390000010494 ENSGT00940000162309 ENSGT00390000008984 ENSGT00940000167088 Percomorphaceae_B ANCESTRAL SPECIES 14 ENSGT00940000170113 ENSGT00940000156418 ENSGT00940000156495 ENSGT00390000000470.n ENSGT00390000005639.a.a ENSGT00390000010628.b ENSGT00530000063586.b.c.b ENSGT00940000154372.a.a.a ENSGT00940000154372.a.b.b ENSGT00940000155988.d ENSGT00940000155372 ENSGT00390000012346 ENSGT00390000011368 ENSGT00940000159958 ENSGT00950000183159.a.v.b ENSGT00940000155317.a.b ##23 ENSGT00940000155569.a.a.f ENSGT00950000183135.B.a.b ENSGT00940000166497 ENSGT00940000159651 ENSGT00940000167002 ENSGT00940000164405 ENSGT00940000165256 ENSGT00940000156842 ENSGT00940000177064 ENSGT00940000175879 ENSGT00390000016264 ENSGT00390000010494 ENSGT00940000162309 ENSGT00390000008984 ENSGT00940000167088 Ovalentaria ANCESTRAL SPECIES 15 ENSGT00940000170113 ENSGT00940000156418 ENSGT00940000156495 ENSGT00390000000470.n ENSGT00390000005639.a.a ENSGT00390000010628.b ENSGT00530000063586.b.c.b ENSGT00940000154372.a.a.a ENSGT00940000154372.a.b.b ENSGT00940000155988.d ENSGT00940000155372 ENSGT00390000012346 ENSGT00390000011368 ENSGT00940000159958 ENSGT00950000183159.a.v.b ENSGT00940000155317.a.b ##23 ENSGT00940000155569.a.a.f ENSGT00950000183135.B.a.b ENSGT00940000166497 ENSGT00940000159651 ENSGT00940000167002 ENSGT00940000164405 ENSGT00940000165256 ENSGT00940000156842 ENSGT00940000177064 ENSGT00940000175879 ENSGT00940000162309 ENSGT00390000008984 ENSGT00940000167088 ENSGT00390000008458 ENSGT00940000157323 Ovalentaria_B ANCESTRAL SPECIES 13 ENSGT00940000170113 ENSGT00940000156418 ENSGT00940000156495 ENSGT00390000000470.n ENSGT00390000005639.a.a ENSGT00390000010628.b ENSGT00530000063586.b.c.b ENSGT00940000154372.a.a.a ENSGT00940000154372.a.b.b ENSGT00940000155988.d ENSGT00940000155372 ENSGT00390000012346 ENSGT00390000011368 ENSGT00940000159958 ENSGT00950000183159.a.v.b.r ENSGT00940000155317.a.b ##23 ENSGT00950000183135.B.a.b ENSGT00940000166497 ENSGT00940000159651 ENSGT00940000167002 ENSGT00940000164405 ENSGT00940000165256 ENSGT00940000156842 ENSGT00390000010494 ENSGT00940000177064 ENSGT00940000175879 ENSGT00940000162309 ENSGT00390000008984 ENSGT00940000167088 ENSGT00390000008458 ENSGT00940000157323 Pomacentridae ANCESTRAL SPECIES 58 ENSGT00530000063586.b.c.b ENSGT00940000154372.a.a.a ENSGT00940000154372.a.b.b ENSGT00940000155988.d ENSGT00940000155372 ENSGT00390000012346 ENSGT00390000011368 ENSGT00940000159958 ENSGT00950000183159.a.v.b.r ENSGT00940000155317.a.b ##23 ENSGT00990000208107 ENSGT00950000183135.B.a.b ENSGT00940000166497 ENSGT00940000159651 ENSGT00940000167002 ENSGT00940000164405 ENSGT00940000165256 ENSGT00940000156842 ENSGT00940000177064 ENSGT00940000175879 ENSGT00940000162309 ENSGT00390000008984 ENSGT00940000167088 ENSGT00390000008458 ENSGT00940000157323.j Pomacentridae_A ANCESTRAL SPECIES 60 ENSGT00530000063586.b.c.b ENSGT00940000154372.a.a.a ENSGT00940000154372.a.b.b ENSGT00940000155988.d ENSGT00940000155372 ENSGT00390000012346 ENSGT00390000011368 ENSGT00940000159958 ENSGT00950000183159.a.v.b.r ENSGT00940000155317.a.b ##23 ENSGT00990000208107 ENSGT00950000183135.B.a.b ENSGT00940000166497 ENSGT00940000159651 ENSGT00940000167002 ENSGT00940000164405 ENSGT00940000165256 ENSGT00940000156842 ENSGT00940000177064 ENSGT00940000175879 ENSGT00940000162309 ENSGT00390000008984 ENSGT00940000167088 ENSGT00390000008458 ENSGT00940000157323.j Amphiprion DUPLICATION Amphiprion ANCESTRAL SPECIES 256 ENSGT00530000063586.b.c.b ENSGT00940000154372.a.a.a ENSGT00940000154372.a.b.b ENSGT00940000155988.d ENSGT00940000155372 ENSGT00390000012346 ENSGT00390000011368 ENSGT00940000159958 ENSGT00950000183159.a.v.b.r ENSGT00940000155317.a.b.a ##23 ENSGT00990000208107 ENSGT00940000155317.a.b.b ##23 ENSGT00950000183135.B.a.b Clown anemonefish MODERN SPECIES 1698 prom1a (ENSAOCG00000008640) fgfbp2a (ENSAOCG00000008659) FGFBP1 (ENSAOCG00000008662) anxa5a (ENSAOCG00000008796) ccna2 (ENSAOCG00000008821) bbs7 (ENSAOCG00000008900) tmem33 (ENSAOCG00000008939) phox2bb (ENSAOCG00000008959) ENSAOCG00000008976 ENSAOCG00000008981 ENSAOCG00000009005 ##23 Orange clownfish MODERN SPECIES 4 BBS12 (ENSAPEG00000000998) adad1 (ENSAPEG00000000903) tlx2 (ENSAPEG00000000879) npm1b (ENSAPEG00000000868) fgf24 (ENSAPEG00000000818) pcgf1 (ENSAPEG00000000782) lbx2 (ENSAPEG00000000769) prom1a (ENSAPEG00000000672) ENSAPEG00000000648 anxa5a (ENSAPEG00000000308) ccna2 (ENSAPEG00000019431) bbs7 (ENSAPEG00000019379) tmem33 (ENSAPEG00000019346) phox2bb (ENSAPEG00000019328) LIMCH1 (ENSAPEG00000019181) ENSAPEG00000019147 ##23 ENSAPEG00000019062 nanos1 (ENSAPEG00000019024) ENSAPEG00000019013 mif (ENSAPEG00000019008) ENSAPEG00000018986 ENSAPEG00000018977 kctd16a (ENSAPEG00000018972) nr3c1 (ENSAPEG00000018955) fgf1a (ENSAPEG00000018936) NDFIP1 (ENSAPEG00000018901) gnpda1 (ENSAPEG00000018868) hspa4b (ENSAPEG00000018807) uqcrq (ENSAPEG00000018787) gdf9 (ENSAPEG00000018761) ENSAPEG00000018738 Amphiprion ANCESTRAL SPECIES 256 ENSGT00530000063586.b.c.b ENSGT00940000154372.a.a.a ENSGT00940000154372.a.b.b ENSGT00940000155988.d ENSGT00940000155372 ENSGT00390000012346 ENSGT00390000011368 ENSGT00940000159958 ENSGT00950000183159.a.v.b.r ENSGT00940000155317.a.b.a ##23 ENSGT00990000208107 ENSGT00940000155317.a.b.b ##23 ENSGT00950000183135.B.a.b Clown anemonefish MODERN SPECIES 2166 ENSAOCG00000012422 ##23 nanos1 (ENSAOCG00000012346) Spiny chromis MODERN SPECIES 68 ENSAPOG00000004431 ##23 nanos1 (ENSAPOG00000004421) ENSAPOG00000004385 lbx2 (ENSAPOG00000004365) pcgf1 (ENSAPOG00000004335) fgf24 (ENSAPOG00000004293) npm1b (ENSAPOG00000004268) tlx2 (ENSAPOG00000004247) adad1 (ENSAPOG00000004214) ENSAPOG00000004139 ENSAPOG00000004111 ENSAPOG00000004075 BBS12 (ENSAPOG00000004057) fgf2 (ENSAPOG00000004050) nudt6 (ENSAPOG00000004041) SPATA5 (ENSAPOG00000004022) Bicolor damselfish MODERN SPECIES 252 phox2bb (ENSSPAG00000010513) ENSSPAG00000010579 ENSSPAG00000010850 ##23 ENSSPAG00000010883 nanos1 (ENSSPAG00000011053) lbx2 (ENSSPAG00000011078) pcgf1 (ENSSPAG00000011090) fgf24 (ENSSPAG00000011117) npm1b (ENSSPAG00000011152) tlx2 (ENSSPAG00000011182) adad1 (ENSSPAG00000011210) ENSSPAG00000011301 ENSSPAG00000011340 ENSSPAG00000011347 BBS12 (ENSSPAG00000011361) fgf2 (ENSSPAG00000011370) nudt6 (ENSSPAG00000011374) SPATA5 (ENSSPAG00000011393) Cichlidae ANCESTRAL SPECIES 8 ENSGT00940000170113 ENSGT00940000156418 ENSGT00940000156495 ENSGT00390000000470.n ENSGT00390000005639.a.a ENSGT00390000010628.b ENSGT00530000063586.b.c.b ENSGT00940000154372.a.a.a ENSGT00940000154372.a.b.b ENSGT00940000155988.d ENSGT00940000155372 ENSGT00390000012346 ENSGT00390000011368 ENSGT00940000159958 ENSGT00950000183159.a.v.b.r ENSGT00940000155317.a.b ##23 ENSGT00950000183135.B.a.b ENSGT00940000166497 ENSGT00940000159651 ENSGT00940000167002 ENSGT00940000164405 ENSGT00940000165256 ENSGT00940000156842 ENSGT00390000010494 ENSGT00940000177064 ENSGT00940000175879 ENSGT00940000162309 ENSGT00390000008984 ENSGT00940000167088 ENSGT00390000008458 ENSGT00940000157323 Pseudocrenilabrinae ANCESTRAL SPECIES 27 ENSGT00940000170113 ENSGT00940000156418 ENSGT00940000156495 ENSGT00390000000470.n ENSGT00390000005639.a.a ENSGT00390000010628.b ENSGT00530000063586.b.c.b ENSGT00940000154372.a.a.a ENSGT00940000154372.a.b.b ENSGT00940000155988.d ENSGT00940000155372 ENSGT00390000012346 ENSGT00390000011368 ENSGT00940000159958 ENSGT00950000183159.a.v.b.r ENSGT00940000155317.a.b ##23 ENSGT00950000183135.B.a.b ENSGT00940000166497 ENSGT00940000159651 ENSGT00940000167002 ENSGT00940000164405 ENSGT00940000165256 ENSGT00940000156842 ENSGT00390000010494 ENSGT00940000177064 ENSGT00940000175879 ENSGT00940000162309 ENSGT00390000008984 ENSGT00940000167088 ENSGT00390000008458 ENSGT00940000157323 Pseudocrenilabrinae_A ANCESTRAL SPECIES 31 ENSGT00940000170113 ENSGT00940000156418 ENSGT00940000156495 ENSGT00390000000470.n ENSGT00390000005639.a.a ENSGT00390000010628.b ENSGT00530000063586.b.c.b ENSGT00940000154372.a.a.a ENSGT00940000154372.a.b.b ENSGT00940000155988.d ENSGT00940000155372 ENSGT00390000012346 ENSGT00390000011368 ENSGT00940000159958 ENSGT00950000183159.a.v.b.r ENSGT00940000155317.a.b ##23 ENSGT00950000183135.B.a.b ENSGT00940000166497 ENSGT00940000159651 ENSGT00940000167002 ENSGT00940000164405 ENSGT00940000165256 ENSGT00940000156842 ENSGT00390000010494 ENSGT00940000175879 ENSGT00940000162309 ENSGT00390000008984 ENSGT00940000167088 ENSGT00390000008458 ENSGT00940000157323 ENSGT00950000183055.b.a Haplochromini ANCESTRAL SPECIES 25 ENSGT00940000170113 ENSGT00940000156418 ENSGT00940000156495 ENSGT00390000000470.n ENSGT00390000005639.a.a ENSGT00390000010628.b ENSGT00530000063586.b.c.b ENSGT00940000154372.a.a.a ENSGT00940000154372.a.b.b ENSGT00940000155988.d ENSGT00940000155372 ENSGT00390000012346 ENSGT00390000011368 ENSGT00940000159958 ENSGT00950000183159.a.v.b.r ENSGT00940000155317.a.b ##23 ENSGT00950000183135.B.a.b ENSGT00940000166497 ENSGT00940000159651 ENSGT00940000167002 ENSGT00940000164405 ENSGT00940000165256 ENSGT00940000156842 ENSGT00940000178854 ENSGT00940000175879 ENSGT00940000162309 ENSGT00390000008984 ENSGT00940000167088 ENSGT00390000008458 ENSGT00940000157323 ENSGT00950000183055.b.a Haplochromini_A ANCESTRAL SPECIES 28 ENSGT00940000170113 ENSGT00940000156418 ENSGT00940000156495 ENSGT00390000000470.n ENSGT00390000005639.a.a ENSGT00390000010628.b ENSGT00530000063586.b.c.b ENSGT00940000154372.a.a.a ENSGT00940000154372.a.b.b ENSGT00940000155988.d ENSGT00940000155372 ENSGT00390000012346 ENSGT00390000011368 ENSGT00940000159958 ENSGT00950000183159.a.v.b.r ENSGT00940000155317.a.b ##23 ENSGT00950000183135.B.a.b ENSGT00940000166497 ENSGT00940000159651 ENSGT00940000167002 ENSGT00940000164405 ENSGT00940000165256 ENSGT00940000156842 ENSGT00940000178854 ENSGT00940000175879 ENSGT00390000010494 ENSGT00940000162309 ENSGT00390000008984 ENSGT00940000167088 ENSGT00390000008458 ENSGT00940000157323 Haplochromini_B ANCESTRAL SPECIES 45 ENSGT00940000170113 ENSGT00940000156418 ENSGT00940000156495 ENSGT00390000000470.n ENSGT00390000005639.a.a ENSGT00390000010628.b ENSGT00530000063586.b.c.b ENSGT00940000154372.a.a.a ENSGT00940000154372.a.b.b ENSGT00940000155988.d ENSGT00940000155372 ENSGT00390000012346 ENSGT00390000011368 ENSGT00940000159958 ENSGT00950000183159.a.v.b.r ENSGT00940000155317.a.b ##23 ENSGT00950000183135.B.a.b ENSGT00940000166497 ENSGT00940000159651 ENSGT00940000167002 ENSGT00940000164405 ENSGT00940000165256 ENSGT00940000156842 ENSGT00940000178854 ENSGT00940000175879 ENSGT00940000162309 ENSGT00390000008984 ENSGT00940000167088 ENSGT00390000008458 ENSGT00940000157323 ENSGT00950000183055.b.a Eastern happy MODERN SPECIES 11 ENSACLG00000012354 ENSACLG00000012369 fstl5 (ENSACLG00000012483) qdpra (ENSACLG00000012578) ldb2a (ENSACLG00000012598) TAPT1 (ENSACLG00000012655) prom1a (ENSACLG00000012734) fgfbp2a (ENSACLG00000013013) FGFBP1 (ENSACLG00000013018) anxa5a (ENSACLG00000013020) ccna2 (ENSACLG00000013032) bbs7 (ENSACLG00000013055) tmem33 (ENSACLG00000013064) phox2bb (ENSACLG00000013362) LIMCH1 (ENSACLG00000013368) ENSACLG00000013472 ##23 nanos1 (ENSACLG00000013474) lbx2 (ENSACLG00000013753) pcgf1 (ENSACLG00000013756) fgf24 (ENSACLG00000013791) npm1b (ENSACLG00000013812) tlx2 (ENSACLG00000013823) adad1 (ENSACLG00000013906) adad1 (ENSACLG00000013974) ENSACLG00000013999 ENSACLG00000014008 ENSACLG00000014019 BBS12 (ENSACLG00000014069) fgf2 (ENSACLG00000014102) nudt6 (ENSACLG00000014111) SPATA5 (ENSACLG00000014212) Zebra mbuna MODERN SPECIES 1102 ENSMZEG00005002016 RAPGEF2 (ENSMZEG00005002059) fstl5 (ENSMZEG00005002191) qdpra (ENSMZEG00005002244) ldb2a (ENSMZEG00005002272) TAPT1 (ENSMZEG00005002312) prom1a (ENSMZEG00005002355) fgfbp2a (ENSMZEG00005002458) FGFBP1 (ENSMZEG00005002471) anxa5a (ENSMZEG00005002493) ccna2 (ENSMZEG00005002532) bbs7 (ENSMZEG00005002574) tmem33 (ENSMZEG00005002633) phox2bb (ENSMZEG00005002657) LIMCH1 (ENSMZEG00005002675) ENSMZEG00005002711 ##23 nanos1 (ENSMZEG00005002722) lbx2 (ENSMZEG00005002756) pcgf1 (ENSMZEG00005002774) fgf24 (ENSMZEG00005002819) ENSMZEG00005002840 tlx2 (ENSMZEG00005002903) adad1 (ENSMZEG00005002920) ENSMZEG00005002934 ENSMZEG00005002951 ENSMZEG00005002992 BBS12 (ENSMZEG00005003011) fgf2 (ENSMZEG00005003019) nudt6 (ENSMZEG00005003029) SPATA5 (ENSMZEG00005003059) spry1 (ENSMZEG00005003130) P. nyererei MODERN SPECIES 315 RAPGEF2 (ENSPNYG00000021497) fstl5 (ENSPNYG00000000677) qdpra (ENSPNYG00000000729) ldb2a (ENSPNYG00000000755) TAPT1 (ENSPNYG00000000787) prom1a (ENSPNYG00000000823) fgfbp2a (ENSPNYG00000000907) FGFBP1 (ENSPNYG00000000927) anxa5a (ENSPNYG00000000939) ccna2 (ENSPNYG00000001054) bbs7 (ENSPNYG00000001093) tmem33 (ENSPNYG00000001141) phox2bb (ENSPNYG00000001177) ENSPNYG00000001215 ENSPNYG00000001240 ENSPNYG00000001281 ##23 nanos1 (ENSPNYG00000001325) lbx2 (ENSPNYG00000001372) pcgf1 (ENSPNYG00000001378) fgf24 (ENSPNYG00000001402) npm1b (ENSPNYG00000001427) tlx2 (ENSPNYG00000001436) adad1 (ENSPNYG00000001453) ENSPNYG00000001502 ENSPNYG00000001525 ENSPNYG00000001585 BBS12 (ENSPNYG00000001613) fgf2 (ENSPNYG00000001640) nudt6 (ENSPNYG00000001657) SPATA5 (ENSPNYG00000001697) spry1 (ENSPNYG00000001768) Burton s mouthbrooder MODERN SPECIES 331 prom1a (ENSHBUG00000019421) fgfbp2a (ENSHBUG00000019438) FGFBP1 (ENSHBUG00000019455) anxa5a (ENSHBUG00000019466) ccna2 (ENSHBUG00000019528) bbs7 (ENSHBUG00000019575) tmem33 (ENSHBUG00000019618) phox2bb (ENSHBUG00000019627) ENSHBUG00000019640 ENSHBUG00000019684 ##23 nanos1 (ENSHBUG00000019798) lbx2 (ENSHBUG00000019810) pcgf1 (ENSHBUG00000019867) fgf24 (ENSHBUG00000019893) npm1b (ENSHBUG00000019903) tlx2 (ENSHBUG00000019937) ENSHBUG00000020412 adad1 (ENSHBUG00000020450) ENSHBUG00000020467 ENSHBUG00000020509 ENSHBUG00000020519 BBS12 (ENSHBUG00000020522) fgf2 (ENSHBUG00000020530) nudt6 (ENSHBUG00000020546) SPATA5 (ENSHBUG00000020554) Lyretail cichlid MODERN SPECIES 348 RAPGEF2 (ENSNBRG00000013553) fstl5 (ENSNBRG00000013597) qdpra (ENSNBRG00000013631) ldb2a (ENSNBRG00000013658) TAPT1 (ENSNBRG00000013674) prom1a (ENSNBRG00000013716) fgfbp2a (ENSNBRG00000013763) FGFBP1 (ENSNBRG00000013772) anxa5a (ENSNBRG00000013787) ccna2 (ENSNBRG00000013847) bbs7 (ENSNBRG00000013875) tmem33 (ENSNBRG00000013931) phox2bb (ENSNBRG00000013959) ENSNBRG00000013975 ENSNBRG00000013986 ENSNBRG00000013997 ##23 nanos1 (ENSNBRG00000014018) lbx2 (ENSNBRG00000014077) pcgf1 (ENSNBRG00000014093) fgf24 (ENSNBRG00000014124) npm1b (ENSNBRG00000014133) tlx2 (ENSNBRG00000014142) adad1 (ENSNBRG00000014156) ENSNBRG00000014187 ENSNBRG00000014213 BBS12 (ENSNBRG00000014222) fgf2 (ENSNBRG00000014241) nudt6 (ENSNBRG00000014249) SPATA5 (ENSNBRG00000014268) spry1 (ENSNBRG00000014350) ANKRD50 (ENSNBRG00000014364) Nile tilapia MODERN SPECIES 11 RAPGEF2 (ENSONIG00000001266) fstl5 (ENSONIG00000001287) ENSONIG00000035449 qdpra (ENSONIG00000001296) ldb2a (ENSONIG00000001301) TAPT1 (ENSONIG00000001302) prom1a (ENSONIG00000001308) fgfbp2a (ENSONIG00000001325) FGFBP1 (ENSONIG00000020950) anxa5a (ENSONIG00000001327) ccna2 (ENSONIG00000001338) bbs7 (ENSONIG00000001354) tmem33 (ENSONIG00000001363) phox2bb (ENSONIG00000001369) LIMCH1 (ENSONIG00000001371) ENSONIG00000032026 ##23 lbx2 (ENSONIG00000040386) pcgf1 (ENSONIG00000001378) fgf24 (ENSONIG00000001385) npm1b (ENSONIG00000001397) tlx2 (ENSONIG00000005019) ENSONIG00000022412 adad1 (ENSONIG00000001405) ENSONIG00000001406 ENSONIG00000001409 BBS12 (ENSONIG00000020952) fgf2 (ENSONIG00000001414) nudt6 (ENSONIG00000041339) SPATA5 (ENSONIG00000001421) spry1 (ENSONIG00000039505) ANKRD50 (ENSONIG00000001427) Midas cichlid MODERN SPECIES 1085 fstl5 (ENSACIG00000017506) ENSACIG00000017531 qdpra (ENSACIG00000017538) ldb2a (ENSACIG00000017551) TAPT1 (ENSACIG00000017571) prom1a (ENSACIG00000017637) fgfbp2a (ENSACIG00000018129) FGFBP1 (ENSACIG00000018138) anxa5a (ENSACIG00000018207) ccna2 (ENSACIG00000018789) bbs7 (ENSACIG00000018877) tmem33 (ENSACIG00000018904) phox2bb (ENSACIG00000018923) ENSACIG00000018949 ENSACIG00000019005 ##23 nanos1 (ENSACIG00000019022) lbx2 (ENSACIG00000019040) pcgf1 (ENSACIG00000019051) fgf24 (ENSACIG00000019068) npm1b (ENSACIG00000019100) tlx2 (ENSACIG00000019132) adad1 (ENSACIG00000019144) ENSACIG00000019188 ENSACIG00000019197 ENSACIG00000019216 BBS12 (ENSACIG00000019319) fgf2 (ENSACIG00000019324) nudt6 (ENSACIG00000019330) SPATA5 (ENSACIG00000019337) spry1 (ENSACIG00000019367) Percomorphaceae_C ANCESTRAL SPECIES 16 ENSGT00940000170113 ENSGT00940000156418 ENSGT00940000156495 ENSGT00390000000470.n ENSGT00390000005639.a.a ENSGT00390000010628.b ENSGT00530000063586.b.c.b ENSGT00940000154372.a.a.a ENSGT00940000154372.a.b.b ENSGT00940000155988.d ENSGT00940000155372 ENSGT00390000012346 ENSGT00390000011368 ENSGT00940000159958 ENSGT00950000183159.a.v.b ENSGT00940000155317.a.b ##23 ENSGT00940000155569.a.a.f ENSGT00950000183135.B.a.b ENSGT00940000166497 ENSGT00940000159651 ENSGT00940000167002 ENSGT00940000164405 ENSGT00940000165256 ENSGT00940000156842 ENSGT00940000177064 ENSGT00940000179668 ENSGT00940000175879 ENSGT00940000162309 ENSGT00390000008984 ENSGT00940000167088 ENSGT00390000008458 Eupercaria ANCESTRAL SPECIES 12 ENSGT00940000170113 ENSGT00940000156418 ENSGT00940000156495 ENSGT00390000000470.n ENSGT00390000005639.a.a ENSGT00390000010628.b ENSGT00530000063586.b.c.b ENSGT00940000154372.a.a.a ENSGT00940000154372.a.b.b ENSGT00940000155988.d ENSGT00940000155372 ENSGT00390000012346 ENSGT00390000011368 ENSGT00940000159958 ENSGT00950000183159.a.v.b ENSGT00940000155317.a.b ##23 ENSGT00940000155569.a.a.f ENSGT00950000183135.B.a.b ENSGT00940000166497 ENSGT00940000159651 ENSGT00940000167002 ENSGT00940000164405 ENSGT00940000165256 ENSGT00940000156842 ENSGT00940000177064 ENSGT00940000179668 ENSGT00940000175879 ENSGT00390000016264.a.b ENSGT00390000010494 ENSGT00940000162309 ENSGT00390000008984 Tetraodontidae ANCESTRAL SPECIES 9 ENSGT00390000010773 ENSGT00940000154672 ENSGT00940000156418 ENSGT00940000156495 ENSGT00390000000470.n ENSGT00390000005639.a.a ENSGT00390000010628.b ENSGT00530000063586.b.c.b ENSGT00940000154372.a.b.b ENSGT00940000155988.d ENSGT00940000155372 ENSGT00390000012346 ENSGT00390000011368 ENSGT00940000159958 ENSGT00950000183159.a.v.b ENSGT00940000155317.a.b ##23 ENSGT00950000183135.B.a.b ENSGT00940000166497 ENSGT00940000159651 ENSGT00940000167002 ENSGT00940000164405 ENSGT00940000165256 ENSGT00940000156842 ENSGT00390000016264.a.b ENSGT00390000010494 ENSGT00940000162309 ENSGT00390000008984 ENSGT00940000167088 ENSGT00390000008458 ENSGT00940000157323.h ENSGT00950000183055.b.a Fugu MODERN SPECIES 5 etfdh (ENSTRUG00000016171) ppid (ENSTRUG00000016203) RAPGEF2 (ENSTRUG00000004171) fstl5 (ENSTRUG00000005344) qdpra (ENSTRUG00000005706) ldb2a (ENSTRUG00000019730) TAPT1 (ENSTRUG00000006181) prom1a (ENSTRUG00000006388) ENSTRUG00000006847 anxa5a (ENSTRUG00000006853) ccna2 (ENSTRUG00000007066) bbs7 (ENSTRUG00000007380) tmem33 (ENSTRUG00000007428) phox2bb (ENSTRUG00000007442) LIMCH1 (ENSTRUG00000007537) ENSTRUG00000007731 ##23 ENSTRUG00000030013 nanos1 (ENSTRUG00000021804) lbx2 (ENSTRUG00000025486) pcgf1 (ENSTRUG00000007881) fgf24 (ENSTRUG00000008042) npm1b (ENSTRUG00000008105) tlx2 (ENSTRUG00000008354) adad1 (ENSTRUG00000008514) ENSTRUG00000029258 ENSTRUG00000031475 il-21 (ENSTRUG00000008731) cetn (ENSTRUG00000008744) fgf2 (ENSTRUG00000029971) gfg (ENSTRUG00000024678) ENSTRUG00000030632 Eupecaria_A ANCESTRAL SPECIES 13 ENSGT00940000170113 ENSGT00940000156418 ENSGT00940000156495 ENSGT00390000000470.n ENSGT00390000005639.a.a ENSGT00390000010628.b ENSGT00530000063586.b.c.b ENSGT00940000154372.a.a.a ENSGT00940000154372.a.b.b ENSGT00940000155988.d ENSGT00940000155372 ENSGT00390000012346 ENSGT00390000011368 ENSGT00940000159958 ENSGT00950000183159.a.v.b ENSGT00940000155317.a.b ##23 ENSGT00940000155569.a.a.f ENSGT00950000183135.B.a.b ENSGT00940000166497 ENSGT00940000159651 ENSGT00940000167002 ENSGT00940000164405 ENSGT00940000165256 ENSGT00940000156842 ENSGT00940000177064 ENSGT00940000179668 ENSGT00940000175879 ENSGT00940000162309 ENSGT00390000008984 ENSGT00940000167088 ENSGT00390000008458 Eupecaria_B ANCESTRAL SPECIES 13 ENSGT00940000170113 ENSGT00940000156418 ENSGT00940000156495 ENSGT00390000000470.n ENSGT00390000005639.a.a ENSGT00390000010628.b ENSGT00530000063586.b.c.b ENSGT00940000154372.a.a.a ENSGT00940000154372.a.b.b ENSGT00940000155988.d ENSGT00940000155372 ENSGT00390000012346 ENSGT00390000011368 ENSGT00940000159958 ENSGT00950000183159.a.v.b ENSGT00940000155317.a.b ##23 ENSGT00940000155569.a.a.f ENSGT00950000183135.B.a.b ENSGT00940000166497 ENSGT00940000159651 ENSGT00940000167002 ENSGT00940000164405 ENSGT00940000165256 ENSGT00940000156842 ENSGT00940000177064 ENSGT00940000179668 ENSGT00940000175879 ENSGT00940000162309 ENSGT00390000008984 ENSGT00940000167088 ENSGT00390000008458 Perciformes ANCESTRAL SPECIES 13 ENSGT00940000170113 ENSGT00940000156418 ENSGT00940000156495 ENSGT00390000000470.n ENSGT00390000005639.a.a ENSGT00390000010628.b ENSGT00530000063586.b.c.b ENSGT00940000154372.a.a.a ENSGT00940000154372.a.b.b ENSGT00940000155988.d ENSGT00940000155372 ENSGT00390000012346 ENSGT00390000011368 ENSGT00940000159958 ENSGT00950000183159.a.v.b ENSGT00940000155317.a.b ##23 ENSGT00940000155569.a.a.f ENSGT00950000183135.B.a.b ENSGT00940000166497 ENSGT00940000159651 ENSGT00940000167002 ENSGT00940000164405 ENSGT00940000165256 ENSGT00940000156842 ENSGT00940000177064 ENSGT00940000179668 ENSGT00940000175879 ENSGT00940000162309 ENSGT00390000008984 ENSGT00940000167088 ENSGT00390000008458 Cottioidei ANCESTRAL SPECIES 9 ENSGT00940000154672 ENSGT00940000156418 ENSGT00940000156495 ENSGT00390000000470.n ENSGT00390000005639.a.a ENSGT00390000010628.b ENSGT00530000063586.b.c.b ENSGT00940000154372.a.a.a ENSGT00940000154372.a.b.b ENSGT00940000155988.d ENSGT00940000155372 ENSGT00390000012346 ENSGT00390000011368 ENSGT00940000159958 ENSGT00950000183159.a.v.b ENSGT00940000155317.a.b ##23 ENSGT00950000183135.B.a.b ENSGT00940000166497 ENSGT00940000159651 ENSGT00940000167002 ENSGT00940000164405 ENSGT00940000156842 ENSGT00940000177064 ENSGT00990000209328 ENSGT00940000175879 ENSGT00940000162309 ENSGT00390000008984 ENSGT00940000167088 ENSGT00390000008458 ENSGT00940000157323 ENSGT00940000155116.b Lumpfish MODERN SPECIES 1 RAPGEF2 (ENSCLMG00005012153) fstl5 (ENSCLMG00005012162) qdpra (ENSCLMG00005012191) ldb2a (ENSCLMG00005012196) TAPT1 (ENSCLMG00005012201) prom1a (ENSCLMG00005012610) fgfbp2a (ENSCLMG00005012611) FGFBP1 (ENSCLMG00005012612) anxa5a (ENSCLMG00005012615) ccna2 (ENSCLMG00005012694) bbs7 (ENSCLMG00005012695) tmem33 (ENSCLMG00005012707) phox2bb (ENSCLMG00005012708) ENSCLMG00005012709 ENSCLMG00005012710 ENSCLMG00005012712 ##23 nanos1 (ENSCLMG00005012714) ENSCLMG00005012716 lbx2 (ENSCLMG00005012718) pcgf1 (ENSCLMG00005012719) fgf24 (ENSCLMG00005012721) adad1 (ENSCLMG00005012723) ENSCLMG00005012725 ENSCLMG00005012727 ENSCLMG00005012729 ENSCLMG00005012733 ENSCLMG00005012734 ENSCLMG00005012735 fgf2 (ENSCLMG00005012737) nudt6 (ENSCLMG00005012738) SPATA5 (ENSCLMG00005012739) Perciformes_a ANCESTRAL SPECIES 11 ENSGT00940000170113 ENSGT00940000156418 ENSGT00940000156495 ENSGT00390000000470.n ENSGT00390000005639.a.a ENSGT00390000010628.b ENSGT00530000063586.b.c.b ENSGT00940000154372.a.a.a ENSGT00940000154372.a.b.b ENSGT00940000155988.d ENSGT00940000155372 ENSGT00390000012346 ENSGT00390000011368 ENSGT00940000159958 ENSGT00950000183159.a.v.b ENSGT00940000155317.a.b ##23 ENSGT00940000155569.a.a.f ENSGT00950000183135.B.a.b ENSGT00940000166497 ENSGT00940000159651 ENSGT00940000167002 ENSGT00940000164405 ENSGT00940000165256 ENSGT00940000156842 ENSGT00940000177064 ENSGT00940000179668 ENSGT00940000175879 ENSGT00940000162309 ENSGT00390000008984 ENSGT00940000167088 ENSGT00390000008458 Channel bull blenny MODERN SPECIES 1 ENSCGOG00000002567 RAPGEF2 (ENSCGOG00000001162) fstl5 (ENSCGOG00000001019) qdpra (ENSCGOG00000000998) ldb2a (ENSCGOG00000011797) TAPT1 (ENSCGOG00000011790) prom1a (ENSCGOG00000011701) fgfbp2a (ENSCGOG00000011692) FGFBP1 (ENSCGOG00000011689) anxa5a (ENSCGOG00000011681) ccna2 (ENSCGOG00000011664) bbs7 (ENSCGOG00000011337) tmem33 (ENSCGOG00000011306) phox2bb (ENSCGOG00000011304) LIMCH1 (ENSCGOG00000011277) ENSCGOG00000011270 ##23 nanos1 (ENSCGOG00000011266) lbx2 (ENSCGOG00000011264) pcgf1 (ENSCGOG00000011259) fgf24 (ENSCGOG00000011246) npm1b (ENSCGOG00000011243) tlx2 (ENSCGOG00000011239) adad1 (ENSCGOG00000011237) ENSCGOG00000011236 ENSCGOG00000011235 ENSCGOG00000011221 BBS12 (ENSCGOG00000011218) fgf2 (ENSCGOG00000011213) nudt6 (ENSCGOG00000011211) ENSCGOG00000011207 SPATA5 (ENSCGOG00000010883) Pike perch MODERN SPECIES 32 ENSSLUG00000004466 qdpra (ENSSLUG00000004487) ldb2a (ENSSLUG00000004503) TAPT1 (ENSSLUG00000004584) prom1a (ENSSLUG00000005400) fgfbp2a (ENSSLUG00000006531) ENSSLUG00000006536 anxa5a (ENSSLUG00000006554) ccna2 (ENSSLUG00000006726) bbs7 (ENSSLUG00000006751) tmem33 (ENSSLUG00000006805) phox2bb (ENSSLUG00000006850) ENSSLUG00000006860 ENSSLUG00000006866 ENSSLUG00000006873 ENSSLUG00000006880 ##23 CTSZ (ENSSLUG00000006890) nanos1 (ENSSLUG00000006984) ENSSLUG00000006991 lbx2 (ENSSLUG00000006997) pcgf1 (ENSSLUG00000007015) fgf24 (ENSSLUG00000007054) npm1b (ENSSLUG00000007071) tlx2 (ENSSLUG00000007085) adad1 (ENSSLUG00000007116) ENSSLUG00000007278 ENSSLUG00000007294 ENSSLUG00000007301 ENSSLUG00000007323 BBS12 (ENSSLUG00000007336) fgf2 (ENSSLUG00000007342) Eupecaria_C ANCESTRAL SPECIES 12 ENSGT00940000170113 ENSGT00940000156418 ENSGT00940000156495 ENSGT00390000000470.n ENSGT00390000005639.a.a ENSGT00390000010628.b ENSGT00530000063586.b.c.b ENSGT00940000154372.a.a.a ENSGT00940000154372.a.b.b ENSGT00940000155988.d ENSGT00940000155372 ENSGT00390000012346 ENSGT00390000011368 ENSGT00940000159958 ENSGT00950000183159.a.v.b ENSGT00940000155317.a.b ##23 ENSGT00940000155569.a.a.f ENSGT00950000183135.B.a.b ENSGT00940000166497 ENSGT00940000159651 ENSGT00940000167002 ENSGT00940000164405 ENSGT00940000165256 ENSGT00940000156842 ENSGT00940000177064 ENSGT00940000179668 ENSGT00940000175879 ENSGT00940000162309 ENSGT00390000008984 ENSGT00940000167088 ENSGT00390000008458 Gilthead seabream MODERN SPECIES 9 fstl5 (ENSSAUG00010012500) qdpra (ENSSAUG00010014008) ldb2a (ENSSAUG00010014013) TAPT1 (ENSSAUG00010014049) prom1a (ENSSAUG00010014320) fgfbp2a (ENSSAUG00010014479) FGFBP1 (ENSSAUG00010014480) anxa5a (ENSSAUG00010014484) ccna2 (ENSSAUG00010014495) bbs7 (ENSSAUG00010014501) tmem33 (ENSSAUG00010014552) ENSSAUG00010014570 phox2bb (ENSSAUG00010014573) LIMCH1 (ENSSAUG00010014577) ENSSAUG00010014595 ENSSAUG00010014598 ##23 ctsz (ENSSAUG00010014606) nanos1 (ENSSAUG00010014612) lbx2 (ENSSAUG00010014615) pcgf1 (ENSSAUG00010014622) fgf24 (ENSSAUG00010014633) tlx2 (ENSSAUG00010014641) ENSSAUG00010014642 adad1 (ENSSAUG00010014643) ENSSAUG00010014644 ENSSAUG00010014645 Eupercaria_incertae_sedis ANCESTRAL SPECIES 39 ENSGT00940000170113 ENSGT00940000156418 ENSGT00940000156495 ENSGT00390000000470.n ENSGT00390000005639.a.a ENSGT00390000010628.b ENSGT00530000063586.b.c.b ENSGT00940000154372.a.a.a ENSGT00940000154372.a.b.b ENSGT00940000155988.d ENSGT00940000155372 ENSGT00390000012346 ENSGT00390000011368 ENSGT00940000159958 ENSGT00950000183159.a.v.b ENSGT00940000155317.a.b ##23 ENSGT00940000155569.a.a.f ENSGT00950000183135.B.a.b ENSGT00940000166497 ENSGT00940000159651 ENSGT00940000167002 ENSGT00940000164405 ENSGT00940000165256 ENSGT00940000156842 ENSGT00940000177064 ENSGT00940000175879 ENSGT00940000162309 ENSGT00390000008984 ENSGT00940000167088 ENSGT00390000008458 ENSGT00940000157323 European seabass MODERN SPECIES 12 rxfp1 (ENSDLAG00005020439) etfdh (ENSDLAG00005019524) ppid (ENSDLAG00005028391) RAPGEF2 (ENSDLAG00005015387) FSTL5 (ENSDLAG00005014297) qdpra (ENSDLAG00005014238) ldb2a (ENSDLAG00005014165) TAPT1 (ENSDLAG00005013767) prom1a (ENSDLAG00005011795) fgfbp2a (ENSDLAG00005011747) FGFBP1 (ENSDLAG00005027041) anxa5a (ENSDLAG00005011468) CCNA2 (ENSDLAG00005011439) BBS7 (ENSDLAG00005011350) ENSDLAG00005011311 ENSDLAG00005011011 ##23 ENSDLAG00005011029 ENSDLAG00005011006 nanos1 (ENSDLAG00005010999) lbx2 (ENSDLAG00005032899) pcgf1 (ENSDLAG00005010940) fgf24 (ENSDLAG00005010916) npm1b (ENSDLAG00005010908) tlx2 (ENSDLAG00005010893) ENSDLAG00005010881 ENSDLAG00005010875 adad1 (ENSDLAG00005028046) ENSDLAG00005028307 ENSDLAG00005031973 NUDT6 (ENSDLAG00005031083) SPATA5 (ENSDLAG00005010165) Large yellow croaker MODERN SPECIES 479 RAPGEF2 (ENSLCRG00005012132) ENSLCRG00005012163 fstl5 (ENSLCRG00005012169) qdpra (ENSLCRG00005012893) ldb2a (ENSLCRG00005012896) TAPT1 (ENSLCRG00005012909) prom1a (ENSLCRG00005013631) fgfbp2a (ENSLCRG00005015215) FGFBP1 (ENSLCRG00005015216) anxa5a (ENSLCRG00005015222) ccna2 (ENSLCRG00005015239) bbs7 (ENSLCRG00005015244) tmem33 (ENSLCRG00005015248) phox2bb (ENSLCRG00005015251) LIMCH1 (ENSLCRG00005015259) ENSLCRG00005015287 ##23 ENSLCRG00005015288 ENSLCRG00005015289 ENSLCRG00005000271 tbcela (ENSLCRG00005000526) usp2a (ENSLCRG00005000541) ENSLCRG00005001271 ENSLCRG00005001272 gemin4 (ENSLCRG00005001273) dhrs13b.2 (ENSLCRG00005001277) ENSLCRG00005001278 smtnl (ENSLCRG00005001282) ENSLCRG00005001288 tmem199 (ENSLCRG00005001290) poldip2 (ENSLCRG00005001295) LRRC75A (ENSLCRG00005002322) Ballan wrasse MODERN SPECIES 468 ccna2 (ENSLBEG00000016252) bbs7 (ENSLBEG00000016317) tmem33 (ENSLBEG00000016411) phox2bb (ENSLBEG00000016441) ENSLBEG00000016463 ENSLBEG00000016482 ##23 ctsz (ENSLBEG00000016521) nanos1 (ENSLBEG00000016559) Percomorphaceae_D ANCESTRAL SPECIES 17 ENSGT00940000170113 ENSGT00940000156418 ENSGT00940000156495 ENSGT00390000000470.n ENSGT00390000005639.a.a ENSGT00390000010628.b ENSGT00530000063586.b.c.b ENSGT00940000154372.a.a.a ENSGT00940000154372.a.b.b ENSGT00940000155988.d ENSGT00940000155372 ENSGT00390000012346 ENSGT00390000011368 ENSGT00940000159958 ENSGT00950000183159.a.v.b ENSGT00940000155317.a.b ##23 ENSGT00940000155569.a.a.f ENSGT00950000183135.B.a.b ENSGT00940000166497 ENSGT00940000159651 ENSGT00940000167002 ENSGT00940000164405 ENSGT00940000165256 ENSGT00940000156842 ENSGT00940000177064 ENSGT00940000179668 ENSGT00940000175879 ENSGT00940000162309 ENSGT00390000008984 ENSGT00940000167088 ENSGT00390000008458 Carangaria ANCESTRAL SPECIES 15 ENSGT00940000170113 ENSGT00940000156418 ENSGT00940000156495 ENSGT00390000000470.n ENSGT00390000005639.a.a ENSGT00390000010628.b ENSGT00530000063586.b.c.b ENSGT00940000154372.a.a.a ENSGT00940000154372.a.b.b ENSGT00940000155988.d ENSGT00940000155372 ENSGT00390000012346 ENSGT00390000011368 ENSGT00940000159958 ENSGT00950000183159.a.v.b ENSGT00940000155317.a.b ##23 ENSGT00940000155569.a.a.f ENSGT00950000183135.B.a.b ENSGT00940000166497 ENSGT00940000159651 ENSGT00940000167002 ENSGT00940000164405 ENSGT00940000165256 ENSGT00940000156842 ENSGT00940000177064 ENSGT00940000179668 ENSGT00940000175879 ENSGT00940000162309 ENSGT00390000008984 ENSGT00940000167088 ENSGT00390000008458 Carangaria_A ANCESTRAL SPECIES 17 ENSGT00940000170113 ENSGT00940000156418 ENSGT00940000156495 ENSGT00390000000470.n ENSGT00390000005639.a.a ENSGT00390000010628.b ENSGT00530000063586.b.c.b ENSGT00940000154372.a.a.a ENSGT00940000154372.a.b.b ENSGT00940000155988.d ENSGT00940000155372 ENSGT00390000012346 ENSGT00390000011368 ENSGT00940000159958 ENSGT00950000183159.a.v.b ENSGT00940000155317.a.b ##23 ENSGT00940000155569.a.a.f ENSGT00950000183135.B.a.b ENSGT00940000166497 ENSGT00940000159651 ENSGT00940000167002 ENSGT00940000164405 ENSGT00940000165256 ENSGT00940000156842 ENSGT00940000177064 ENSGT00940000179668 ENSGT00940000175879 ENSGT00940000162309 ENSGT00390000008984 ENSGT00940000167088 ENSGT00390000008458 Seriola ANCESTRAL SPECIES 31 ENSGT00510000046787.e.b ENSGT00940000156418 ENSGT00940000156495 ENSGT00390000000470.n ENSGT00390000005639.a.a ENSGT00390000010628.b ENSGT00530000063586.b.c.b ENSGT00940000154372.a.a.a ENSGT00940000154372.a.b.b ENSGT00940000155988.d ENSGT00940000155372 ENSGT00390000012346 ENSGT00390000011368 ENSGT00940000159958 ENSGT00950000183159.a.v.b ENSGT00940000155317.a.b ##23 ENSGT00940000155569.a.a.f ENSGT00950000183135.B.a.b ENSGT00940000166497 ENSGT00940000159651 ENSGT00940000167002 ENSGT00940000164405 ENSGT00940000165256 ENSGT00940000156842 ENSGT00940000177064 ENSGT00940000179668 ENSGT00940000175879 ENSGT00940000162309 ENSGT00390000008984 ENSGT00940000167088 ENSGT00390000008458 Yellowtail amberjack MODERN SPECIES 3227 anxa5a (ENSSLDG00000020728) ccna2 (ENSSLDG00000020748) bbs7 (ENSSLDG00000020761) tmem33 (ENSSLDG00000020781) phox2bb (ENSSLDG00000020789) ENSSLDG00000020803 ENSSLDG00000020821 ENSSLDG00000020834 ENSSLDG00000020846 ##23 ctsz (ENSSLDG00000020890) nanos1 (ENSSLDG00000021260) lbx2 (ENSSLDG00000021319) pcgf1 (ENSSLDG00000021330) fgf24 (ENSSLDG00000021371) npm1b (ENSSLDG00000021396) tlx2 (ENSSLDG00000021412) adad1 (ENSSLDG00000021425) ENSSLDG00000021457 ENSSLDG00000021473 ENSSLDG00000021485 ENSSLDG00000021513 BBS12 (ENSSLDG00000021525) fgf2 (ENSSLDG00000021538) nudt6 (ENSSLDG00000021544) Greater amberjack MODERN SPECIES 113 RAPGEF2 (ENSSDUG00000008556) ENSSDUG00000008521 fstl5 (ENSSDUG00000008435) qdpra (ENSSDUG00000008398) ldb2a (ENSSDUG00000008359) TAPT1 (ENSSDUG00000008283) prom1a (ENSSDUG00000008149) fgfbp2a (ENSSDUG00000008124) anxa5a (ENSSDUG00000008109) ccna2 (ENSSDUG00000008091) bbs7 (ENSSDUG00000008052) tmem33 (ENSSDUG00000008030) phox2bb (ENSSDUG00000008009) ENSSDUG00000007997 ENSSDUG00000007963 ENSSDUG00000007959 ##23 ctsz (ENSSDUG00000007940) nanos1 (ENSSDUG00000007879) ENSSDUG00000007863 lbx2 (ENSSDUG00000007835) pcgf1 (ENSSDUG00000007795) fgf24 (ENSSDUG00000007744) npm1b (ENSSDUG00000007726) tlx2 (ENSSDUG00000007708) ENSSDUG00000007693 ENSSDUG00000007672 ENSSDUG00000007637 ENSSDUG00000007624 adad1 (ENSSDUG00000007569) fgf2 (ENSSDUG00000007551) nudt6 (ENSSDUG00000007536) Barramundi perch DUPLICATION Barramundi perch DUPLICATION Barramundi perch MODERN SPECIES 974 ENSLCAG00010001890 ##23 Barramundi perch MODERN SPECIES 467 prom1a (ENSLCAG00010026214) fgfbp2a (ENSLCAG00010026351) ENSLCAG00010026353 anxa5a (ENSLCAG00010026356) ccna2 (ENSLCAG00010026361) bbs7 (ENSLCAG00010026365) tmem33 (ENSLCAG00010026370) phox2bb (ENSLCAG00010026373) LIMCH1 (ENSLCAG00010026404) ENSLCAG00010026485 ##23 Barramundi perch MODERN SPECIES 178 ENSLCAG00010001373 ##23 ctsz (ENSLCAG00010001378) nanos1 (ENSLCAG00010001382) lbx2 (ENSLCAG00010001383) pcgf1 (ENSLCAG00010001389) fgf24 (ENSLCAG00010001396) npm1b (ENSLCAG00010001406) tlx2 (ENSLCAG00010001411) adad1 (ENSLCAG00010001420) ENSLCAG00010001437 ENSLCAG00010001442 ENSLCAG00010001446 fgf2 (ENSLCAG00010001459) nudt6 (ENSLCAG00010001463) SPATA5 (ENSLCAG00010001487) spry1 (ENSLCAG00010001560) Pleuronectoidei ANCESTRAL SPECIES 19 ENSGT00940000170113 ENSGT00940000156418 ENSGT00940000156495 ENSGT00390000000470.n ENSGT00390000005639.a.a ENSGT00390000010628.b ENSGT00530000063586.b.c.b ENSGT00940000154372.a.a.a ENSGT00940000154372.a.b.b ENSGT00940000155988.d ENSGT00940000155372 ENSGT00390000012346 ENSGT00390000011368 ENSGT00940000159958 ENSGT00950000183159.a.v.b ENSGT00940000155317.a.b ##23 ENSGT00940000155569.a.a.f ENSGT00950000183135.B.a.b ENSGT00940000166497 ENSGT00940000159651 ENSGT00940000167002 ENSGT00940000164405 ENSGT00940000165256 ENSGT00940000156842 ENSGT00940000177064 ENSGT00940000175879 ENSGT00940000162309 ENSGT00390000008984 ENSGT00940000167088 ENSGT00390000008458 ENSGT00940000157323 Turbot MODERN SPECIES 4 ENSSMAG00000025465 RAPGEF2 (ENSSMAG00000008911) FSTL5 (ENSSMAG00000008858) qdpra (ENSSMAG00000008823) ldb2a (ENSSMAG00000008806) TAPT1 (ENSSMAG00000008743) prom1a (ENSSMAG00000008631) fgfbp2a (ENSSMAG00000008609) ENSSMAG00000008603 anxa5a (ENSSMAG00000008545) CCNA2 (ENSSMAG00000008532) BBS7 (ENSSMAG00000008476) TMEM33 (ENSSMAG00000008440) ENSSMAG00000022063 ENSSMAG00000008200 ENSSMAG00000008166 ##23 ENSSMAG00000008160 nanos1 (ENSSMAG00000028442) lbx2 (ENSSMAG00000008154) pcgf1 (ENSSMAG00000008128) fgf24 (ENSSMAG00000030102) npm1b (ENSSMAG00000034406) tlx2 (ENSSMAG00000008078) adad1 (ENSSMAG00000008001) ENSSMAG00000007988 ENSSMAG00000007983 ENSSMAG00000007970 ENSSMAG00000031831 ENSSMAG00000007964 BBS12 (ENSSMAG00000007962) ENSSMAG00000033472 Tongue sole MODERN SPECIES 6 ENSCSEG00000004698 SLC16A2 (ENSCSEG00000004695) ENSCSEG00000004681 pmt (ENSCSEG00000004664) MID2 (ENSCSEG00000004649) TSC22D3 (ENSCSEG00000004629) PCDH11Y (ENSCSEG00000004620) ENSCSEG00000004611 anxa5a (ENSCSEG00000004605) ccna2 (ENSCSEG00000004599) bbs7 (ENSCSEG00000004585) tmem33 (ENSCSEG00000004578) phox2bb (ENSCSEG00000004572) ENSCSEG00000004569 ENSCSEG00000004565 ENSCSEG00000004563 ##23 ctsz (ENSCSEG00000004552) nanos1 (ENSCSEG00000004547) lbx2 (ENSCSEG00000004546) pcgf1 (ENSCSEG00000004544) fgf24 (ENSCSEG00000004534) npm1b (ENSCSEG00000004530) ENSCSEG00000004526 ENSCSEG00000004521 adad1 (ENSCSEG00000004516) ENSCSEG00000004512 ENSCSEG00000004511 BBS12 (ENSCSEG00000004509) fgf2 (ENSCSEG00000004508) nudt6 (ENSCSEG00000004505) SPATA5 (ENSCSEG00000004499) Anabantaria ANCESTRAL SPECIES 15 ENSGT00940000170113 ENSGT00940000156418 ENSGT00940000156495 ENSGT00390000000470.n ENSGT00390000005639.a.a ENSGT00390000010628.b ENSGT00530000063586.b.c.b ENSGT00940000154372.a.a.a ENSGT00940000154372.a.b.b ENSGT00940000155988.d ENSGT00940000155372 ENSGT00390000012346 ENSGT00390000011368 ENSGT00940000159958 ENSGT00950000183159.a.v.b ENSGT00940000155317.a.b ##23 ENSGT00940000155569.a.a.f ENSGT00950000183135.B.a.b ENSGT00940000166497 ENSGT00940000159651 ENSGT00940000167002 ENSGT00940000164405 ENSGT00940000165256 ENSGT00940000156842 ENSGT00940000177064 ENSGT00990000209328 ENSGT00940000175879 ENSGT00940000162309 ENSGT00390000008984 ENSGT00940000167088 ENSGT00390000008458 Zig-zag eel MODERN SPECIES 1 ENSMAMG00000016738 RAPGEF2 (ENSMAMG00000016541) ENSMAMG00000026550 FSTL5 (ENSMAMG00000016494) qdpra (ENSMAMG00000016334) ldb2a (ENSMAMG00000016290) TAPT1 (ENSMAMG00000016214) prom1a (ENSMAMG00000016090) FGFBP1 (ENSMAMG00000016060) anxa5a (ENSMAMG00000015911) CCNA2 (ENSMAMG00000015888) BBS7 (ENSMAMG00000015828) TMEM33 (ENSMAMG00000015795) ENSMAMG00000015788 LIMCH1 (ENSMAMG00000015744) ENSMAMG00000015711 ##23 ENSMAMG00000015692 nanos1 (ENSMAMG00000028036) lbx2 (ENSMAMG00000015453) pcgf1 (ENSMAMG00000015424) fgf24 (ENSMAMG00000028535) npm1b (ENSMAMG00000028041) tlx2 (ENSMAMG00000027290) adad1 (ENSMAMG00000015290) ENSMAMG00000015275 ENSMAMG00000027504 ENSMAMG00000015239 ENSMAMG00000026314 ENSMAMG00000015230 BBS12 (ENSMAMG00000015225) fgf2 (ENSMAMG00000027910) Tiger tail seahorse MODERN SPECIES 353 RAPGEF2 (ENSHCOG00000009307) ENSHCOG00000009332 orai2 (ENSHCOG00000009359) fstl5 (ENSHCOG00000009492) qdpra (ENSHCOG00000009525) ldb2a (ENSHCOG00000009547) TAPT1 (ENSHCOG00000009580) prom1a (ENSHCOG00000009634) ENSHCOG00000009642 anxa5a (ENSHCOG00000009931) ccna2 (ENSHCOG00000009956) bbs7 (ENSHCOG00000010044) tmem33 (ENSHCOG00000010094) phox2bb (ENSHCOG00000010125) LIMCH1 (ENSHCOG00000010161) ENSHCOG00000010185 ##23 ctsz (ENSHCOG00000010305) ENSHCOG00000010320 nanos1 (ENSHCOG00000010326) dnaaf1 (ENSHCOG00000010341) ENSHCOG00000010354 Pinecone sodierfish MODERN SPECIES 1 ENSMMDG00005024060 ENSMMDG00005024065 ENSMMDG00005024068 tmem216 (ENSMMDG00005024073) ENSMMDG00005024077 tmed9 (ENSMMDG00005024078) b4galt7 (ENSMMDG00005024082) emx3 (ENSMMDG00005024085) CCDC69 (ENSMMDG00005024088) gm2a (ENSMMDG00005024089) bbs7 (ENSMMDG00005024098) tmem33 (ENSMMDG00005024118) phox2bb (ENSMMDG00005024119) ENSMMDG00005024123 ENSMMDG00005024124 ENSMMDG00005024125 ##23 ctsz (ENSMMDG00005024127) nanos1 (ENSMMDG00005024128) ENSMMDG00005004225 lbx2 (ENSMMDG00005004230) pcgf1 (ENSMMDG00005004243) npm1b (ENSMMDG00005004265) tlx2 (ENSMMDG00005004287) adad1 (ENSMMDG00005004299) ENSMMDG00005004317 ENSMMDG00005004325 BBS12 (ENSMMDG00005004333) fgf2 (ENSMMDG00005004338) nudt6 (ENSMMDG00005004349) SPATA5 (ENSMMDG00005004447) spry1 (ENSMMDG00005006122) Cod MODERN SPECIES 1 ENSGMOG00000002900 elovl6a (ENSGMOG00000002888) pitx2 (ENSGMOG00000028593) ENSGMOG00000012419 ENSGMOG00000012416 ENSGMOG00000012412 ENSGMOG00000008840 ENSGMOG00000032959 ANXA5 (ENSGMOG00000019400) ENSGMOG00000030162 CCNA2 (ENSGMOG00000012712) BBS7 (ENSGMOG00000012717) TMEM33 (ENSGMOG00000012721) ENSGMOG00000034262 LIMCH1 (ENSGMOG00000023784) ENSGMOG00000012732 ##23 lbx2 (ENSGMOG00000022499) pcgf1 (ENSGMOG00000016075) fgf24 (ENSGMOG00000028793) npm1b (ENSGMOG00000002689) tlx2 (ENSGMOG00000002723) adad1 (ENSGMOG00000002821) ENSGMOG00000016979 BBS12 (ENSGMOG00000031617) fgf2 (ENSGMOG00000011016) NUDT6 (ENSGMOG00000011027) SPATA5 (ENSGMOG00000011036) spry1 (ENSGMOG00000030540) ANKRD50 (ENSGMOG00000023665) ENSGMOG00000029812 ENSGMOG00000035025 Osteoglossiformes ANCESTRAL SPECIES 55 ENSGT00940000160554 ENSGT00940000166432.a ENSGT01000000220367 ENSGT00940000164468.a.a.b.b.b ENSGT00940000164468.a.a.b.b.a ENSGT00940000164468.a.b.a.b ENSGT00940000164468.a.b.b ENSGT00940000164983.d.c.a ENSGT00940000165759 ENSGT00940000159910 ENSGT01030000235223 ENSGT01060000248588.a.c.a ENSGT00940000158371 ENSGT00940000166070 ENSGT00390000002137 ENSGT00940000155317.a.b ##23 ENSGT00940000160403 ENSGT00940000153137.a.b ENSGT00940000160738 ENSGT00950000183201.b.b.b.a ENSGT00950000182915.a.a.a ENSGT00940000156526.a ENSGT00390000002781 ENSGT00390000006124 ENSGT00940000158554 ENSGT00940000157465 ENSGT01050000244840.A.b.a ENSGT00390000015484.i ENSGT00940000155521.a.a P. kingsleyae MODERN SPECIES 39 ENSPKIG00000016314 ENSPKIG00000016302 ENSPKIG00000016290 ENSPKIG00000016270 ENSPKIG00000016245 ENSPKIG00000016230 ENSPKIG00000016154 ENSPKIG00000016109 ENSPKIG00000016033 DIAPH1 (ENSPKIG00000015916) ENSPKIG00000015862 trpc7a (ENSPKIG00000015843) SPOCK1 (ENSPKIG00000015769) bicc2 (ENSPKIG00000015555) ENSPKIG00000015505 ENSPKIG00000015463 ##23 PCDH12 (ENSPKIG00000015442) ENSPKIG00000015426 LTC4S (ENSPKIG00000015412) MAML1 (ENSPKIG00000015388) canx (ENSPKIG00000015357) mgat4b (ENSPKIG00000015283) ENSPKIG00000015251 sqstm1 (ENSPKIG00000015230) ENSPKIG00000015209 TBC1D9B (ENSPKIG00000015082) rnf130 (ENSPKIG00000014920) F2RL3 (ENSPKIG00000014856) Spotted gar MODERN SPECIES 672 ENSLOCG00000011253 ENSLOCG00000011258 pcdh1g2 (ENSLOCG00000011265) ENSLOCG00000011280 ENSLOCG00000011292 ENSLOCG00000011299 ENSLOCG00000018309 ENSLOCG00000011309 pcdh1g32 (ENSLOCG00000011316) DIAPH1 (ENSLOCG00000011329) TRPC7 (ENSLOCG00000011343) SPOCK1 (ENSLOCG00000011355) bicc2 (ENSLOCG00000011365) ENSLOCG00000011380 ENSLOCG00000011390 ENSLOCG00000011398 ##23 PCDH12 (ENSLOCG00000011407) LTC4S (ENSLOCG00000011416) MAML1 (ENSLOCG00000011427) canx (ENSLOCG00000011437) mgat4b (ENSLOCG00000011450) sqstm1 (ENSLOCG00000011462) ENSLOCG00000011470 TBC1D9B (ENSLOCG00000011473) rnf130 (ENSLOCG00000011483) F2RL3 (ENSLOCG00000011493) lect2.1 (ENSLOCG00000011500) PCDH1 (ENSLOCG00000011506) smad5 (ENSLOCG00000011514) tgfbi (ENSLOCG00000011520) ENSLOCG00000011527 Reedfish MODERN SPECIES 2 ENSECRG00000011039 ENSECRG00000011034 ENSECRG00000011027 ENSECRG00000011019 ENSECRG00000011005 pcdh1g31 (ENSECRG00000010990) ENSECRG00000010986 ENSECRG00000010983 ENSECRG00000010970 ENSECRG00000010953 DIAPH1 (ENSECRG00000010465) ENSECRG00000010334 trpc7a (ENSECRG00000010285) SPOCK1 (ENSECRG00000010233) ENSECRG00000010216 ENSECRG00000010113 ##23 PCDH12 (ENSECRG00000010080) LTC4S (ENSECRG00000010071) MAML1 (ENSECRG00000010061) canx (ENSECRG00000010037) mgat4b (ENSECRG00000010015) sqstm1 (ENSECRG00000009997) ENSECRG00000009988 ENSECRG00000009976 ENSECRG00000009962 ENSECRG00000009954 slit3 (ENSECRG00000009684) cxcl14 (ENSECRG00000009596) FAM13B (ENSECRG00000009581) ENSECRG00000009567 KLHL3 (ENSECRG00000009502) Sarcopterygii ANCESTRAL SPECIES ENSGT00940000155317.a.b ##23 Coelacanth MODERN SPECIES 476 PCDH1 (ENSLACG00000015969) ENSLACG00000013425 ARAP3 (ENSLACG00000012937) ENSLACG00000012866 MGAT4B (ENSLACG00000012591) SQSTM1 (ENSLACG00000012177) ENSLACG00000012135 ENSLACG00000012057 ENSLACG00000011951 ##23 ENSLACG00000011904 PCDH12 (ENSLACG00000011665) ENSLACG00000011565 CANX (ENSLACG00000011213) MAML1 (ENSLACG00000010918) ENSLACG00000010673 FCHSD1 (ENSLACG00000010262) ENSLACG00000010113 hdac3 (ENSLACG00000009761) DIAPH1 (ENSLACG00000008375) ENSLACG00000007072 ENSLACG00000007011 ENSLACG00000006212 ENSLACG00000003645