Sarcopterygii ANCESTRAL SPECIES 125 ENSGT00940000157380 ENSGT00940000159036 ENSGT00510000046975.b ENSGT00940000164616 ENSGT00940000157769 ENSGT00940000153464.A.b ENSGT00940000154842.a.b #12 ENSGT00390000013340 #14 ENSGT00940000156906 #15 ENSGT00390000008608 #16 ENSGT00940000163309 ENSGT00390000002659 #18 ENSGT01020000230412.A.c.b.d #19 ENSGT00390000018059.b #20 ENSGT00940000160907 #21 ENSGT00940000160836.d #22 ENSGT00950000183161.b ENSGT00940000158561 ENSGT00940000155005 ENSGT00390000015399 ENSGT00510000047399 ENSGT00940000158056 ENSGT00390000005496 ENSGT00940000155468 ENSGT00390000013502.b ENSGT01060000248544.a.a.b.a.b ENSGT00390000011644 ENSGT00940000164279 Tetrapoda ANCESTRAL SPECIES 140 ENSGT00940000157380 ENSGT00940000159036 ENSGT00510000046975.b ENSGT00940000164616 ENSGT00940000157769 ENSGT00940000153464.A.b ENSGT00940000154842.a.b #12 ENSGT00390000013340 #14 ENSGT00940000156906 #15 ENSGT00390000008608 #16 ENSGT00940000163309 ENSGT00390000002659 #18 ENSGT01020000230412.A.c.b.d #19 ENSGT00390000018059.b #20 ENSGT00940000160907 #21 ENSGT00940000160836.d #22 ENSGT00940000160493 #23 Anura DUPLICATION Anura ANCESTRAL SPECIES 6 ENSGT00940000156750 ENSGT00940000158998 ENSGT00390000003182 ENSGT00390000006932 ENSGT00940000157395 ENSGT00950000182827.C ENSGT00940000164178.gb ENSGT00940000164178.fb ENSGT00390000012596 ENSGT00940000157774 ENSGT00390000004199 ENSGT00940000157380 ENSGT00940000159036 ENSGT00510000046975.b ENSGT00940000153464.A.b ENSGT00940000160836.d.d #22 ENSGT00940000160493 #23 ENSGT00940000160836.d.c.a ##22 ENSGT00940000160256 ENSGT00940000161339 ENSGT00940000161099.i.a ENSGT00950000183161.b ENSGT00940000158561 ENSGT00940000155005 ENSGT00390000015399.j ENSGT00510000047399 ENSGT00940000158056 ENSGT00390000005496 ENSGT00390000013502.b ENSGT01060000248544.a.a.b.a.b ENSGT00390000011644 Frog DUPLICATION Frog DUPLICATION Frog MODERN SPECIES 4 ENSXETG00000034276 #7 atf6 (ENSXETG00000004747) #8 olfml2b (ENSXETG00000004748) #9 ENSXETG00000034778 #10 rxrg (ENSXETG00000004750) #11 ddr2 (ENSXETG00000004752) #12 XB5769266 [provisional] (ENSXETG00000004753) #13 hsd17b7 (ENSXETG00000004754) #14 lrrc52 (ENSXETG00000004755) #15 mgst3 (ENSXETG00000004756) #16 aldh9a1 (ENSXETG00000004757) #17 tmco1 (ENSXETG00000017353) #18 uck2 (ENSXETG00000017357) #19 spen (ENSXETG00000017359) #20 plpp6 (ENSXETG00000017360) #21 fmo5.1 (ENSXETG00000009900) #22 fmo5.2 (ENSXETG00000017362) #23 pla2g4a (ENSXETG00000017371) #24 ptgs2 (ENSXETG00000017378) #25 pdc (ENSXETG00000037305) #26 odr4 (ENSXETG00000017388) #27 tpr (ENSXETG00000017390) #28 prg4 (ENSXETG00000040496) #29 hmcn1 (ENSXETG00000017411) #30 apobec4 (ENSXETG00000017441) #31 tsen15 (ENSXETG00000038505) #32 colgalt2 (ENSXETG00000017443) #33 c1orf21 (ENSXETG00000017447) #34 ccdc134 (ENSXETG00000017448) #35 srebf2 (ENSXETG00000017449) #36 cyp2d6 (ENSXETG00000024804) #37 Frog MODERN SPECIES 4 trmt13 (ENSXETG00000013204) sass6.2 (ENSXETG00000013202) mfsd14a (ENSXETG00000013200) slc35a3.1 (ENSXETG00000047097) ENSXETG00000013197 ENSXETG00000042726 ENSXETG00000041829 agl (ENSXETG00000013185) lmx1a (ENSXETG00000013183) pbx1 (ENSXETG00000010464) nuf2 (ENSXETG00000010463) rgs5 (ENSXETG00000042048) rgs4 (ENSXETG00000010461) nos1ap (ENSXETG00000010460) uap1 (ENSXETG00000010459) ENSXETG00000033174 ##22 ENSXETG00000025145 ##22 MGC89174 (ENSXETG00000010457) ##22 fmo2 (ENSXETG00000010456) fmo3 (ENSXETG00000025142) fmo1 (ENSXETG00000025141) prrc2c (ENSXETG00000010448) myoc (ENSXETG00000038908) vamp4 (ENSXETG00000010444) itpa (ENSXETG00000036089) mettl13 (ENSXETG00000010438) dnm3 (ENSXETG00000000538) pigc (ENSXETG00000040951) suco (ENSXETG00000000531) faslg (ENSXETG00000041356) ENSXETG00000041893 Frog MODERN SPECIES 4 sass6.2 (ENSXETG00000013202) mfsd14a (ENSXETG00000013200) slc35a3.1 (ENSXETG00000047097) ENSXETG00000013197 ENSXETG00000042726 ENSXETG00000041829 agl (ENSXETG00000013185) lmx1a (ENSXETG00000013183) pbx1 (ENSXETG00000010464) nuf2 (ENSXETG00000010463) rgs5 (ENSXETG00000042048) rgs4 (ENSXETG00000010461) nos1ap (ENSXETG00000010460) uap1 (ENSXETG00000010459) ENSXETG00000033174 ##22 ENSXETG00000025145 ##22 MGC89174 (ENSXETG00000010457) ##22 fmo2 (ENSXETG00000010456) fmo3 (ENSXETG00000025142) fmo1 (ENSXETG00000025141) prrc2c (ENSXETG00000010448) myoc (ENSXETG00000038908) vamp4 (ENSXETG00000010444) itpa (ENSXETG00000036089) mettl13 (ENSXETG00000010438) dnm3 (ENSXETG00000000538) pigc (ENSXETG00000040951) suco (ENSXETG00000000531) faslg (ENSXETG00000041356) ENSXETG00000041893 ctdspl (ENSXETG00000000526) Leishan spiny toad DUPLICATION Leishan spiny toad MODERN SPECIES 11 ENSLLEG00000025626 ENSLLEG00000025560 QARS1 (ENSLLEG00000025177) QRICH1 (ENSLLEG00000024772) IMPDH2 (ENSLLEG00000024470) ENSLLEG00000024382 NDUFAF3 (ENSLLEG00000024298) HSD17B7 (ENSLLEG00000024177) #14 ENSLLEG00000024154 ENSLLEG00000023854 #16 ENSLLEG00000023650 #17 TMCO1 (ENSLLEG00000023474) #18 UCK2 (ENSLLEG00000023321) #19 FAM78B (ENSLLEG00000023271) #20 PLPP6 (ENSLLEG00000023248) #21 ENSLLEG00000023172 #22 PLA2G4A (ENSLLEG00000022334) #24 PTGS2 (ENSLLEG00000021891) #25 ENSLLEG00000021850 PDC (ENSLLEG00000021813) #26 ODR4 (ENSLLEG00000021599) #27 TPR (ENSLLEG00000020224) #28 SRGAP3 (ENSLLEG00000019969) ENSLLEG00000019942 RAD18 (ENSLLEG00000019425) OXTR (ENSLLEG00000019366) ENSLLEG00000019332 ENSLLEG00000019153 ENSLLEG00000019021 LMCD1 (ENSLLEG00000018847) GRM7 (ENSLLEG00000018177) Leishan spiny toad MODERN SPECIES 11 ENSLLEG00000022322 ENSLLEG00000022049 ENSLLEG00000022008 ENSLLEG00000021945 AGL (ENSLLEG00000018588) ENSLLEG00000018418 LMX1A (ENSLLEG00000018232) ENSLLEG00000018211 PBX1 (ENSLLEG00000017987) NUF2 (ENSLLEG00000017847) RGS5 (ENSLLEG00000017729) RGS4 (ENSLLEG00000017672) ENSLLEG00000017639 ENSLLEG00000017449 UAP1 (ENSLLEG00000017087) ENSLLEG00000016826 #22 ENSLLEG00000016645 ##22 ENSLLEG00000016553 ##22 ENSLLEG00000016231 ENSLLEG00000016120 FMO3 (ENSLLEG00000015978) ENSLLEG00000015865 ENSLLEG00000015754 ENSLLEG00000015734 ENSLLEG00000015678 ENSLLEG00000015526 ENSLLEG00000015406 ENSLLEG00000015242 MYOC (ENSLLEG00000014968) VAMP4 (ENSLLEG00000014901) ENSLLEG00000014879 Anura DUPLICATION Anura ANCESTRAL SPECIES 6 ENSGT00390000003182 ENSGT00390000006932 ENSGT00940000157395 ENSGT00950000182827.C ENSGT00940000164178.gb ENSGT00940000164178.fb ENSGT00390000012596 ENSGT00940000157774 ENSGT00390000004199 ENSGT00940000157380 ENSGT00940000159036 ENSGT00510000046975.b ENSGT00940000153464.A.b ENSGT00940000160836.d.d #22 ENSGT00940000160493 #23 ENSGT00940000160836.d.c.a ##22 ENSGT00940000160256 ENSGT00940000161339 ENSGT00940000161099.i.a ENSGT00950000183161.b ENSGT00940000158561 ENSGT00940000155005 ENSGT00390000015399.j ENSGT00510000047399 ENSGT00940000158056 ENSGT00390000005496 ENSGT00390000013502.b ENSGT01060000248544.a.a.b.a.b ENSGT00390000011644 ENSGT00550000074794 ENSGT00940000164279 Frog MODERN SPECIES 4 mfsd14a (ENSXETG00000013200) slc35a3.1 (ENSXETG00000047097) ENSXETG00000013197 ENSXETG00000042726 ENSXETG00000041829 agl (ENSXETG00000013185) lmx1a (ENSXETG00000013183) pbx1 (ENSXETG00000010464) nuf2 (ENSXETG00000010463) rgs5 (ENSXETG00000042048) rgs4 (ENSXETG00000010461) nos1ap (ENSXETG00000010460) uap1 (ENSXETG00000010459) ENSXETG00000033174 ##22 ENSXETG00000025145 ##22 MGC89174 (ENSXETG00000010457) ##22 fmo2 (ENSXETG00000010456) fmo3 (ENSXETG00000025142) fmo1 (ENSXETG00000025141) prrc2c (ENSXETG00000010448) myoc (ENSXETG00000038908) vamp4 (ENSXETG00000010444) itpa (ENSXETG00000036089) mettl13 (ENSXETG00000010438) dnm3 (ENSXETG00000000538) pigc (ENSXETG00000040951) suco (ENSXETG00000000531) faslg (ENSXETG00000041356) ENSXETG00000041893 ctdspl (ENSXETG00000000526) prdx6 (ENSXETG00000000525) Leishan spiny toad MODERN SPECIES 11 ENSLLEG00000022008 ENSLLEG00000021945 AGL (ENSLLEG00000018588) ENSLLEG00000018418 LMX1A (ENSLLEG00000018232) ENSLLEG00000018211 PBX1 (ENSLLEG00000017987) NUF2 (ENSLLEG00000017847) RGS5 (ENSLLEG00000017729) RGS4 (ENSLLEG00000017672) ENSLLEG00000017639 ENSLLEG00000017449 UAP1 (ENSLLEG00000017087) ENSLLEG00000016826 #22 ENSLLEG00000016645 ##22 ENSLLEG00000016553 ##22 ENSLLEG00000016231 ENSLLEG00000016120 FMO3 (ENSLLEG00000015978) ENSLLEG00000015865 ENSLLEG00000015754 ENSLLEG00000015734 ENSLLEG00000015678 ENSLLEG00000015526 ENSLLEG00000015406 ENSLLEG00000015242 MYOC (ENSLLEG00000014968) VAMP4 (ENSLLEG00000014901) ENSLLEG00000014879 ENSLLEG00000014731 METTL13 (ENSLLEG00000014655) Anura ANCESTRAL SPECIES ENSGT00940000160836.d.c.b ##22 Leishan spiny toad MODERN SPECIES 11 ENSLLEG00000022049 ENSLLEG00000022008 ENSLLEG00000021945 AGL (ENSLLEG00000018588) ENSLLEG00000018418 LMX1A (ENSLLEG00000018232) ENSLLEG00000018211 PBX1 (ENSLLEG00000017987) NUF2 (ENSLLEG00000017847) RGS5 (ENSLLEG00000017729) RGS4 (ENSLLEG00000017672) ENSLLEG00000017639 ENSLLEG00000017449 UAP1 (ENSLLEG00000017087) ENSLLEG00000016826 #22 ENSLLEG00000016645 ##22 ENSLLEG00000016553 ##22 ENSLLEG00000016231 ENSLLEG00000016120 FMO3 (ENSLLEG00000015978) ENSLLEG00000015865 ENSLLEG00000015754 ENSLLEG00000015734 ENSLLEG00000015678 ENSLLEG00000015526 ENSLLEG00000015406 ENSLLEG00000015242 MYOC (ENSLLEG00000014968) VAMP4 (ENSLLEG00000014901) ENSLLEG00000014879 ENSLLEG00000014731 Amniota ANCESTRAL SPECIES 99 ENSGT00940000156906 #15 ENSGT00390000008608 #16 ENSGT00940000163309 ENSGT00390000002659 #18 ENSGT01020000230412.A.c.b.d #19 ENSGT00390000018059.b #20 ENSGT00940000160907 #21 ENSGT00940000160836.d #22 ENSGT00940000160493 #23 ENSGT00940000159284 ENSGT00950000183190.a.a.b ENSGT00950000183190.a.a.a.b ENSGT00940000156349 ENSGT00940000155030 ENSGT00940000161011 ENSGT00390000006096.a.a ENSGT00940000155863 Mammalia ANCESTRAL SPECIES 5 ENSGT00940000159036 ENSGT00940000157380 ENSGT00390000004199 ENSGT00940000163762.a.a ENSGT00940000154374.b ENSGT00940000157774 ENSGT00940000161269 #11 ENSGT00940000156906 #15 ENSGT00390000008608 #16 ENSGT00940000163309 ENSGT00390000002659 #18 ENSGT01020000230412.A.c.b.d #19 ENSGT00390000018059.b #20 ENSGT00940000160836.d #22 ENSGT00440000039028 ENSGT00390000011644 ENSGT00950000183058.A.a ENSGT00390000003645 ENSGT00940000160248 ENSGT00940000159723 ENSGT00940000157831 ENSGT00390000018208 ENSGT00390000005914.a ENSGT00940000153997.b.a.b ENSGT01030000234556.a.b.a ENSGT00390000001322 ENSGT00510000047120 ENSGT00950000182900.C ENSGT00940000157829 Theria ANCESTRAL SPECIES 12 ENSGT00390000013340 #14 ENSGT00390000014067 ENSGT00940000159036 ENSGT00940000157380 ENSGT00390000004199 ENSGT00940000163762.a.a ENSGT00940000154374.b ENSGT00940000157774 ENSGT00940000161269 #11 ENSGT00940000156906 #15 ENSGT00390000008608 #16 ENSGT00940000163309 ENSGT00390000002659 #18 ENSGT01020000230412.A.c.b.d #19 ENSGT00390000018059.b #20 ENSGT00940000160836.d #22 ENSGT00940000162904 ENSGT00440000039028 ENSGT00390000011644 ENSGT00950000183058.A.a ENSGT00390000003645 ENSGT00940000160248 ENSGT00940000159723 ENSGT00940000157831 ENSGT00390000018208 ENSGT00390000005914.a ENSGT00940000153997.b.a.b ENSGT01030000234556.a.b.a ENSGT00390000001322 ENSGT00510000047120 ENSGT00950000182900.C Eutheria ANCESTRAL SPECIES ENSGT00390000013340 #14 ENSGT00390000014067 ENSGT00940000159036 ENSGT00940000157380 ENSGT00390000004199 ENSGT00940000163762.a.a ENSGT00940000154374.b ENSGT00940000157774 ENSGT00940000161269 #11 ENSGT00940000156906 #15 ENSGT00390000008608 #16 ENSGT00940000163309 ENSGT00390000002659 #18 ENSGT01020000230412.A.c.b.d #19 ENSGT00390000018059.b #20 ENSGT00940000160836.d #22 ENSGT00940000162904 ENSGT00440000039028 ENSGT00390000011644 ENSGT00950000183058.A.a ENSGT00390000003645 ENSGT00940000160248 ENSGT00940000159723 ENSGT00940000157831 ENSGT00390000018208 ENSGT00390000005914.a ENSGT00940000153997.b.a.b ENSGT01030000234556.a.b.a ENSGT00390000001322 ENSGT00510000047120 ENSGT00950000182900.C Boreoeutheria ANCESTRAL SPECIES ENSGT00910000148347 ENSGT00940000157380 ENSGT00390000004199 ENSGT00940000163762.a.a ENSGT00940000154374.b ENSGT00940000157774 ENSGT00940000161269 #11 ENSGT00940000156906 #15 ENSGT00390000008608 #16 ENSGT00940000162687 #17 ENSGT00940000163309 ENSGT00390000002659 #18 ENSGT01020000230412.A.c.b.d #19 ENSGT00390000018059.b #20 ENSGT00940000162904 ENSGT00940000160836.d #22 ENSGT00440000039028 ENSGT00390000011644 ENSGT00950000185149 ENSGT00950000183058.A.a ENSGT00390000003645 ENSGT00940000160248 ENSGT00940000159723 ENSGT00940000157831 ENSGT00390000018208 ENSGT00390000005914.a ENSGT00940000153997.b.a.b ENSGT01030000234556.a.b.a ENSGT00390000001322 ENSGT00510000047120 ENSGT00950000182900.C Euarchontoglires ANCESTRAL SPECIES ENSGT00390000014067 ENSGT00940000159036 ENSGT00910000148347 ENSGT00940000157380 ENSGT00390000004199 ENSGT00940000154374.b ENSGT00940000157774 ENSGT00940000161269 #11 ENSGT00940000156906 #15 ENSGT00390000008608 #16 ENSGT00940000162687 #17 ENSGT00940000163309 ENSGT00390000002659 #18 ENSGT01020000230412.A.c.b.d #19 ENSGT00390000018059.b #20 ENSGT00940000160836.d #22 ENSGT00940000162904 ENSGT00440000039028 ENSGT00390000011644 ENSGT00950000185149 ENSGT00950000183058.A.a ENSGT00390000003645 ENSGT00940000160248 ENSGT00940000159723 ENSGT00940000157831 ENSGT00390000018208 ENSGT00390000005914.a ENSGT00940000153997.b.a.b ENSGT01030000234556.a.b.a ENSGT00390000001322 ENSGT00510000047120 Primates ANCESTRAL SPECIES 7 ENSGT00940000159036 ENSGT00910000148347 ENSGT00940000157380 ENSGT00390000004199 ENSGT00940000154374.b ENSGT00940000157774 ENSGT00940000161269 #11 ENSGT00940000156906 #15 ENSGT00390000008608 #16 ENSGT00940000162687 #17 ENSGT00940000163309 ENSGT00390000002659 #18 ENSGT01020000230412.A.c.b.d #19 ENSGT00390000018059.b #20 ENSGT00940000162904 ENSGT00940000160836.d #22 ENSGT00440000039028 ENSGT00390000011644 ENSGT00950000185149 ENSGT00950000183058.A.a ENSGT00390000003645 ENSGT00940000160248 ENSGT00940000159723 ENSGT00940000157831 ENSGT00390000018208 ENSGT00390000005914.a ENSGT00940000153997.b.a.b ENSGT01030000234556.a.b.a ENSGT00390000001322 ENSGT00510000047120 ENSGT00950000182900.C Haplorrhini ANCESTRAL SPECIES ENSGT00940000160836.d #22 Simiiformes ANCESTRAL SPECIES ENSGT00940000160836.d #22 Catarrhini ANCESTRAL SPECIES ENSGT00940000160836.d #22 Hominoidea ANCESTRAL SPECIES ENSGT00940000160836.d #22 Hominidae ANCESTRAL SPECIES ENSGT00940000160836.d #22 Homo/Pan/Gorilla group ANCESTRAL SPECIES 6 ENSGT00390000014067 ENSGT00940000159036 ENSGT00940000157380 ENSGT00390000004199 ENSGT00940000154374.b ENSGT00940000157774 ENSGT00940000161269 #11 ENSGT00940000156906 #15 ENSGT00940000154326.a.b.b.m.b.a ENSGT00390000008608 #16 ENSGT00940000163309 ENSGT00390000002659 #18 ENSGT01020000230412.A.c.b.d #19 ENSGT00390000018059.b #20 ENSGT00940000154191.j ENSGT00940000160836.d #22 ENSGT00440000039028 ENSGT00910000147137 ENSGT00390000011644 ENSGT00950000183058.A.a ENSGT00390000003645 ENSGT00940000160248 ENSGT00940000159723 ENSGT00940000157831 ENSGT00390000018208 ENSGT00390000005914.a ENSGT00910000146947 ENSGT00940000153997.b.a.b ENSGT01030000234556.a.b.a ENSGT00910000147687 ENSGT00910000146993 Homo/Pan group ANCESTRAL SPECIES 7 ENSGT00390000014067 ENSGT00940000159036 ENSGT00940000157380 ENSGT00390000004199 ENSGT00940000154374.b ENSGT00940000157774 ENSGT00940000161269 #11 ENSGT00940000156906 #15 ENSGT00940000154326.a.b.b.m.b.a ENSGT00390000008608 #16 ENSGT00940000163309 ENSGT00390000002659 #18 ENSGT01020000230412.A.c.b.d #19 ENSGT00390000018059.b #20 ENSGT00940000154191.j ENSGT00940000160836.d #22 ENSGT00440000039028 ENSGT00910000147137 ENSGT00390000011644 ENSGT00950000183058.A.a ENSGT00390000003645 ENSGT00940000160248 ENSGT00940000159723 ENSGT00940000157831 ENSGT00390000018208 ENSGT00390000005914.a ENSGT00910000146947 ENSGT00940000153997.b.a.b ENSGT01030000234556.a.b.a ENSGT00910000147687 ENSGT00910000146993 Pan ANCESTRAL SPECIES ENSGT00390000014067 ENSGT00940000159036 ENSGT00940000157380 ENSGT00390000004199 ENSGT00940000154374.b ENSGT00940000157774 ENSGT00940000161269 #11 ENSGT00940000156906 #15 ENSGT00940000154326.a.b.b.m.b.a ENSGT00390000008608 #16 ENSGT00940000163309 ENSGT00390000002659 #18 ENSGT01020000230412.A.c.b.d #19 ENSGT00390000018059.b #20 ENSGT00940000154191.j ENSGT00940000160836.d #22 ENSGT00440000039028 ENSGT00910000147137 ENSGT00390000011644 ENSGT00950000183058.A.a ENSGT00390000003645 ENSGT00940000160248 ENSGT00940000159723 ENSGT00940000157831 ENSGT00390000018208 ENSGT00390000005914.a ENSGT00910000146947 ENSGT00940000153997.b.a.b ENSGT01030000234556.a.b.a.y ENSGT00910000147687 ENSGT00910000146993 Chimpanzee MODERN SPECIES HSD17B7 (ENSPTRG00000002435) #14 CCDC190 (ENSPTRG00000047448) RGS4 (ENSPTRG00000001608) RGS5 (ENSPTRG00000001609) NUF2 (ENSPTRG00000001610) PBX1 (ENSPTRG00000001611) LMX1A (ENSPTRG00000001612) RXRG (ENSPTRG00000023788) #11 LRRC52 (ENSPTRG00000001614) #15 MGST3 (ENSPTRG00000001616) #16 ALDH9A1 (ENSPTRG00000001617) TMCO1 (ENSPTRG00000001618) #18 UCK2 (ENSPTRG00000001619) #19 FAM78B (ENSPTRG00000001621) #20 ENSPTRG00000048937 ENSPTRG00000045175 #22 POGK (ENSPTRG00000001626) TADA1 (ENSPTRG00000045809) ILDR2 (ENSPTRG00000001628) MAEL (ENSPTRG00000001629) GPA33 (ENSPTRG00000001630) STYXL2 (ENSPTRG00000022532) POU2F1 (ENSPTRG00000048706) CD247 (ENSPTRG00000023523) CREG1 (ENSPTRG00000001635) RCSD1 (ENSPTRG00000023609) MPZL1 (ENSPTRG00000052515) ENSPTRG00000048617 ADCY10 (ENSPTRG00000001638) MPC2 (ENSPTRG00000001640) DCAF6 (ENSPTRG00000001641) Bonobo MODERN SPECIES CCDC190 (ENSPPAG00000041751) ENSPPAG00000032457 RGS5 (ENSPPAG00000031360) NUF2 (ENSPPAG00000042496) PBX1 (ENSPPAG00000012661) LMX1A (ENSPPAG00000032600) RXRG (ENSPPAG00000032033) #11 LRRC52 (ENSPPAG00000042343) #15 ENSPPAG00000029238 MGST3 (ENSPPAG00000036962) #16 ALDH9A1 (ENSPPAG00000041488) ENSPPAG00000033973 #18 UCK2 (ENSPPAG00000028634) #19 FAM78B (ENSPPAG00000027797) #20 ENSPPAG00000035278 ENSPPAG00000029061 #22 POGK (ENSPPAG00000037835) ENSPPAG00000042755 TADA1 (ENSPPAG00000041262) ILDR2 (ENSPPAG00000037100) MAEL (ENSPPAG00000042153) GPA33 (ENSPPAG00000039182) STYXL2 (ENSPPAG00000029959) POU2F1 (ENSPPAG00000036465) CD247 (ENSPPAG00000043003) CREG1 (ENSPPAG00000033939) ENSPPAG00000000372 RCSD1 (ENSPPAG00000035815) ENSPPAG00000033429 ENSPPAG00000027493 ENSPPAG00000029835 Gorilla MODERN SPECIES CCDC190 (ENSGGOG00000001952) ENSGGOG00000011376 RGS5 (ENSGGOG00000013984) NUF2 (ENSGGOG00000007980) PBX1 (ENSGGOG00000011303) ENSGGOG00000042136 LMX1A (ENSGGOG00000003286) RXRG (ENSGGOG00000003983) #11 LRRC52 (ENSGGOG00000007321) #15 MGST3 (ENSGGOG00000013271) #16 ENSGGOG00000000900 #17 ENSGGOG00000041829 #18 UCK2 (ENSGGOG00000038402) #19 FAM78B (ENSGGOG00000034965) #20 ENSGGOG00000038123 ENSGGOG00000026140 #22 ENSGGOG00000026797 POGK (ENSGGOG00000008163) ENSGGOG00000039149 TADA1 (ENSGGOG00000008168) ILDR2 (ENSGGOG00000008177) MAEL (ENSGGOG00000012560) GPA33 (ENSGGOG00000004520) STYXL2 (ENSGGOG00000004523) POU2F1 (ENSGGOG00000016243) CD247 (ENSGGOG00000007716) CREG1 (ENSGGOG00000002145) RCSD1 (ENSGGOG00000007100) MPZL1 (ENSGGOG00000040368) ENSGGOG00000040195 ENSGGOG00000044114 Tarsier MODERN SPECIES 6921 ENSTSYG00000002981 #22 Strepsirrhini ANCESTRAL SPECIES ENSGT00390000014067 ENSGT00940000159036 ENSGT00940000157380 ENSGT00390000004199 ENSGT00940000154374.b ENSGT00940000157774 ENSGT00940000161269 #11 ENSGT00940000156906 #15 ENSGT00390000008608 #16 ENSGT00940000162687 #17 ENSGT00940000163309 ENSGT00390000002659 #18 ENSGT01020000230412.A.c.b.d.a #19 ENSGT00390000018059.b #20 ENSGT00940000162904 ENSGT00940000160836.d #22 ENSGT00440000039028 ENSGT00390000011644 ENSGT00950000185149 ENSGT00950000183058.A.a ENSGT00390000003645 ENSGT00940000160248 ENSGT00940000159723 ENSGT00940000157831 ENSGT00390000018208 ENSGT00390000005914.a ENSGT00940000153997.b.a.b ENSGT01030000234556.a.b.a ENSGT00390000001322 ENSGT00510000047120.i ENSGT00950000182900.C Lemuriformes ANCESTRAL SPECIES 11 ENSGT00390000014067 ENSGT00940000159036 ENSGT00940000157380 ENSGT00390000004199 ENSGT00940000154374.b ENSGT00940000157774 ENSGT00940000161269 #11 ENSGT00940000156906 #15 ENSGT00390000008608 #16 ENSGT00940000162687 #17 ENSGT00940000163309 ENSGT00390000002659 #18 ENSGT01020000230412.A.c.b.d.a #19 ENSGT00390000018059.b #20 ENSGT00940000162904 ENSGT00940000160836.d #22 ENSGT00440000039028 ENSGT00390000011644 ENSGT00950000185149 ENSGT00950000183058.A.a ENSGT00390000003645 ENSGT00940000160248 ENSGT00940000159723 ENSGT00940000157831 ENSGT00390000018208 ENSGT00390000005914.a ENSGT00940000153997.b.a.b ENSGT01030000234556.a.b.a ENSGT00390000001322 ENSGT00510000047120.i ENSGT00950000182900.C Mouse lemur MODERN SPECIES 11 RGS5 (ENSMICG00000007854) NUF2 (ENSMICG00000014089) PBX1 (ENSMICG00000001280) LMX1A (ENSMICG00000041533) RXRG (ENSMICG00000009970) #11 LRRC52 (ENSMICG00000041448) #15 MGST3 (ENSMICG00000008309) #16 ENSMICG00000008315 #17 ENSMICG00000037106 TMCO1 (ENSMICG00000004363) #18 ENSMICG00000044256 UCK2 (ENSMICG00000005282) #19 FAM78B (ENSMICG00000041877) #20 ENSMICG00000043854 ENSMICG00000041719 ENSMICG00000032977 #22 POGK (ENSMICG00000011758) TADA1 (ENSMICG00000042075) ILDR2 (ENSMICG00000011778) MAEL (ENSMICG00000034747) GPA33 (ENSMICG00000007836) STYXL2 (ENSMICG00000048069) POU2F1 (ENSMICG00000011644) CD247 (ENSMICG00000032743) CREG1 (ENSMICG00000011657) RCSD1 (ENSMICG00000026736) MPZL1 (ENSMICG00000011660) ADCY10 (ENSMICG00000011665) MPC2 (ENSMICG00000044989) DCAF6 (ENSMICG00000011699) GPR161 (ENSMICG00000011715) Lemuriformes_a ANCESTRAL SPECIES 74 ENSGT00390000018059.b #20 ENSGT00940000162904 ENSGT00940000160836.d #22 ENSGT00440000039028 ENSGT00390000011644 ENSGT00950000185149 ENSGT00950000183058.A.a ENSGT00390000003645 ENSGT00940000160248 ENSGT00940000159723 ENSGT00940000157831 ENSGT00390000018208 ENSGT00390000005914.a ENSGT00940000153997.b.a.b ENSGT01030000234556.a.b.a ENSGT00390000001322 ENSGT00510000047120.i ENSGT00950000182900.C Greater bamboo lemur MODERN SPECIES 402 FAM78B (ENSPSMG00000010595) #20 ENSPSMG00000010583 ENSPSMG00000010569 #22 POGK (ENSPSMG00000010550) TADA1 (ENSPSMG00000010532) ENSPSMG00000010520 ILDR2 (ENSPSMG00000010338) ENSPSMG00000010195 MAEL (ENSPSMG00000010178) GPA33 (ENSPSMG00000010109) STYXL2 (ENSPSMG00000010097) POU2F1 (ENSPSMG00000010072) CD247 (ENSPSMG00000010011) CREG1 (ENSPSMG00000010004) RCSD1 (ENSPSMG00000010002) MPZL1 (ENSPSMG00000009994) ENSPSMG00000009893 ENSPSMG00000009886 Bushbaby MODERN SPECIES 131 CCDC190 (ENSOGAG00000010997) RGS4 (ENSOGAG00000012669) RGS5 (ENSOGAG00000012674) NUF2 (ENSOGAG00000011652) PBX1 (ENSOGAG00000000132) LMX1A (ENSOGAG00000011315) RXRG (ENSOGAG00000011318) #11 LRRC52 (ENSOGAG00000026494) #15 MGST3 (ENSOGAG00000006196) #16 ENSOGAG00000006198 #17 TMCO1 (ENSOGAG00000011784) #18 UCK2 (ENSOGAG00000014716) #19 ENSOGAG00000032359 FAM78B (ENSOGAG00000014719) #20 ENSOGAG00000032561 ENSOGAG00000007611 #22 POGK (ENSOGAG00000007615) TADA1 (ENSOGAG00000007621) ILDR2 (ENSOGAG00000007624) MAEL (ENSOGAG00000007627) GPA33 (ENSOGAG00000002120) STYXL2 (ENSOGAG00000034721) POU2F1 (ENSOGAG00000005069) CD247 (ENSOGAG00000029232) CREG1 (ENSOGAG00000005362) RCSD1 (ENSOGAG00000005364) MPZL1 (ENSOGAG00000031931) ADCY10 (ENSOGAG00000032805) MPC2 (ENSOGAG00000003130) DCAF6 (ENSOGAG00000003131) GPR161 (ENSOGAG00000003135) Euarchontoglires_A ANCESTRAL SPECIES ENSGT00940000154842.a.b #12 ENSGT00390000013340 #14 ENSGT00390000014067 ENSGT00940000159036 ENSGT00940000157380 ENSGT00390000004199 ENSGT00940000154374.b ENSGT00940000157774 ENSGT00940000161269 #11 ENSGT00940000156906 #15 ENSGT00390000008608 #16 ENSGT00940000162687 #17 ENSGT00390000002659 #18 ENSGT01020000230412.A.c.b.d #19 ENSGT00390000018059.b #20 ENSGT00940000160836.d #22 ENSGT00940000162904 ENSGT00440000039028 ENSGT00390000011644 ENSGT00950000185149 ENSGT00950000183058.A.a ENSGT00390000003645 ENSGT00940000160248 ENSGT00940000159723 ENSGT00940000157831 ENSGT00390000018208 ENSGT00390000005914.a ENSGT00940000153997.b.a.b ENSGT01030000234556.a.b.a ENSGT00390000001322 ENSGT00510000047120 Glires ANCESTRAL SPECIES ENSGT00940000154842.a.b #12 ENSGT00390000013340 #14 ENSGT00390000014067 ENSGT00940000159036 ENSGT00940000157380 ENSGT00390000004199 ENSGT00940000154374.b ENSGT00940000157774 ENSGT00940000161269 #11 ENSGT00940000156906 #15 ENSGT00390000008608 #16 ENSGT00940000162687 #17 ENSGT00390000002659 #18 ENSGT01020000230412.A.c.b.d #19 ENSGT00390000018059.b #20 ENSGT00940000160836.d #22 ENSGT00940000162904 ENSGT00440000039028 ENSGT00390000011644 ENSGT00950000185149 ENSGT00950000183058.A.a ENSGT00390000003645 ENSGT00940000160248 ENSGT00940000159723 ENSGT00940000157831 ENSGT00390000018208 ENSGT00390000005914.a ENSGT00940000153997.b.a.b ENSGT01030000234556.a.b.a ENSGT00390000001322 ENSGT00510000047120 Rodentia ANCESTRAL SPECIES ENSGT00940000154842.a.b #12 ENSGT00390000013340 #14 ENSGT00390000014067 ENSGT00940000159036 ENSGT00940000157380 ENSGT00390000004199 ENSGT00940000154374.b ENSGT00940000157774 ENSGT00940000161269 #11 ENSGT00940000156906 #15 ENSGT00390000008608 #16 ENSGT00940000162687 #17 ENSGT00390000002659 #18 ENSGT01020000230412.A.c.b.d #19 ENSGT00390000018059.b #20 ENSGT00940000160836.d #22 ENSGT00940000162904 ENSGT00440000039028 ENSGT00390000011644 ENSGT00950000185149 ENSGT00950000183058.A.a ENSGT00390000003645 ENSGT00940000160248 ENSGT00940000159723 ENSGT00940000157831 ENSGT00390000018208 ENSGT00390000005914.a ENSGT00940000153997.b.a.b ENSGT01030000234556.a.b.a ENSGT00390000001322 ENSGT00510000047120 Rodentia_A ANCESTRAL SPECIES ENSGT00390000013340 #14 ENSGT00390000014067 ENSGT00940000159036 ENSGT00940000157380 ENSGT00390000004199 ENSGT00940000154374.b ENSGT00940000157774 ENSGT00940000161269 #11 ENSGT00940000156906 #15 ENSGT00390000008608 #16 ENSGT00940000162687 #17 ENSGT00940000163309 ENSGT00390000002659 #18 ENSGT01020000230412.A.c.b.d #19 ENSGT00390000018059.b #20 ENSGT00940000160836.d #22 ENSGT00940000162904 ENSGT00440000039028 ENSGT00390000011644 ENSGT00950000183058.A.a ENSGT00390000003645 ENSGT00940000160248 ENSGT00940000159723 ENSGT00940000157831 ENSGT00390000018208 ENSGT00390000005914.a ENSGT00940000153997.b.a.b ENSGT01030000234556.a.b.a ENSGT00390000001322 ENSGT00510000047120 ENSGT00950000182900.C Hystricomorpha ANCESTRAL SPECIES 2 ENSGT00940000154842.a.b #12 ENSGT00390000013340 #14 ENSGT00390000014067 ENSGT00940000159036 ENSGT00940000157380 ENSGT00390000004199 ENSGT00940000154374.b ENSGT00940000157774 ENSGT00940000161269 #11 ENSGT00940000156906 #15 ENSGT00390000008608 #16 ENSGT00940000163309 ENSGT00390000002659 #18 ENSGT01020000230412.A.c.b.d #19 ENSGT00390000018059.b #20 ENSGT00940000160836.d #22 ENSGT00940000162904.l ENSGT00940000162904.k ENSGT00440000039028 ENSGT00390000011644 ENSGT00950000183058.A.a ENSGT00390000003645 ENSGT00940000160248 ENSGT00940000159723 ENSGT00940000157831 ENSGT00390000018208 ENSGT00390000005914.a ENSGT00940000153997.b.a.b ENSGT01030000234556.a.b.a ENSGT00390000001322 ENSGT00510000047120 Hystricomorpha_a ANCESTRAL SPECIES 11 ENSGT00940000154842.a.b #12 ENSGT00390000013340 #14 ENSGT00390000014067 ENSGT00940000159036 ENSGT00940000157380 ENSGT00390000004199 ENSGT00940000154374.b ENSGT00940000157774 ENSGT00940000161269 #11 ENSGT00940000156906 #15 ENSGT00390000008608 #16 ENSGT00940000163309 ENSGT00390000002659 #18 ENSGT01020000230412.A.c.b.d #19 ENSGT00390000018059.b #20 ENSGT00940000160836.d #22 ENSGT00940000162904.l ENSGT00940000162904.k ENSGT00440000039028 ENSGT00390000011644 ENSGT00950000183058.A.a ENSGT00390000003645 ENSGT00940000160248 ENSGT00940000159723 ENSGT00940000157831 ENSGT00390000018208 ENSGT00390000005914.a ENSGT00940000153997.b.a.b ENSGT01030000234556.a.b.a ENSGT00390000001322 ENSGT00510000047120 Guinea pig MODERN SPECIES 39 CCDC190 (ENSCPOG00000038251) RGS4 (ENSCPOG00000031194) RGS5 (ENSCPOG00000033467) ENSCPOG00000039704 NUF2 (ENSCPOG00000015019) PBX1 (ENSCPOG00000005958) ENSCPOG00000038291 LMX1A (ENSCPOG00000025320) RXRG (ENSCPOG00000015343) #11 LRRC52 (ENSCPOG00000015344) #15 MGST3 (ENSCPOG00000015346) #16 ALDH9A1 (ENSCPOG00000015347) TMCO1 (ENSCPOG00000013728) #18 UCK2 (ENSCPOG00000032384) #19 FAM78B (ENSCPOG00000007868) #20 ENSCPOG00000005192 #22 ENSCPOG00000026225 ENSCPOG00000022892 POGK (ENSCPOG00000026820) TADA1 (ENSCPOG00000025598) ILDR2 (ENSCPOG00000024220) MAEL (ENSCPOG00000005046) GPA33 (ENSCPOG00000000085) STYXL2 (ENSCPOG00000002322) POU2F1 (ENSCPOG00000008237) CD247 (ENSCPOG00000022786) CREG1 (ENSCPOG00000010738) RCSD1 (ENSCPOG00000033238) MPZL1 (ENSCPOG00000038506) ADCY10 (ENSCPOG00000003852) MPC2 (ENSCPOG00000037670) Hystricomorpha_b ANCESTRAL SPECIES 8 ENSGT00390000013340 #14 ENSGT00390000014067 ENSGT00940000159036 ENSGT00940000157380 ENSGT00390000004199 ENSGT00940000154374.b ENSGT00940000157774 ENSGT00940000161269 #11 ENSGT00940000156906 #15 ENSGT00390000008608 #16 ENSGT00940000162687 #17 ENSGT00940000163309 ENSGT00390000002659 #18 ENSGT01020000230412.A.c.b.d #19 ENSGT00390000018059.b #20 ENSGT00940000160836.d #22 ENSGT00940000162904.l ENSGT00940000162904.k ENSGT00440000039028 ENSGT00390000011644 ENSGT00950000183058.A.a ENSGT00390000003645 ENSGT00940000160248 ENSGT00940000159723 ENSGT00940000157831 ENSGT00390000018208 ENSGT00390000005914.a ENSGT00940000153997.b.a.b ENSGT01030000234556.a.b.a ENSGT00390000001322 ENSGT00510000047120 Degu MODERN SPECIES 291 ENSODEG00000001877 #22 ENSODEG00000001894 ENSODEG00000001915 POGK (ENSODEG00000001932) TADA1 (ENSODEG00000001963) ILDR2 (ENSODEG00000002061) MAEL (ENSODEG00000002276) GPA33 (ENSODEG00000002337) STYXL2 (ENSODEG00000002371) ENSODEG00000002436 ENSODEG00000001883 ENSODEG00000001913 ENSODEG00000001956 CD247 (ENSODEG00000002005) CREG1 (ENSODEG00000002026) RCSD1 (ENSODEG00000002064) Sciuridae ANCESTRAL SPECIES ENSGT00940000153464.A.b ENSGT00940000154842.a.b #12 ENSGT00390000013340 #14 ENSGT00940000159036 ENSGT00940000157380 ENSGT00390000004199 ENSGT00940000154374.b ENSGT00940000157774 ENSGT00940000161269 #11 ENSGT00940000156906 #15 ENSGT00390000008608 #16 ENSGT00940000162687 #17 ENSGT00390000002659 #18 ENSGT01020000230412.A.c.b.d #19 ENSGT00390000018059.b #20 ENSGT00940000160836.d #22 ENSGT00940000162904 ENSGT00440000039028 ENSGT00390000011644 ENSGT00950000183058.A.a ENSGT00390000003645 ENSGT00940000160248 ENSGT00940000159723 ENSGT00940000157831 ENSGT00390000018208 ENSGT00390000005914.a ENSGT00940000153997.b.a.b ENSGT01030000234556.a.b.a ENSGT00390000001322 ENSGT00510000047120 ENSGT00950000182900.C Marmotini ANCESTRAL SPECIES 34 ENSGT00940000153464.A.b ENSGT00940000154842.a.b #12 ENSGT00390000013340 #14 ENSGT00940000159036 ENSGT00940000157380 ENSGT00390000004199 ENSGT00940000154374.b ENSGT00940000157774 ENSGT00940000161269 #11 ENSGT00940000156906 #15 ENSGT00390000008608 #16 ENSGT00940000162687 #17 ENSGT00390000002659 #18 ENSGT01020000230412.A.c.b.d #19 ENSGT00390000018059.b #20 ENSGT00940000160836.d #22 ENSGT00940000162904 ENSGT00440000039028 ENSGT00390000011644 ENSGT00950000183058.A.a ENSGT00390000003645 ENSGT00940000160248 ENSGT00940000159723 ENSGT00940000157831 ENSGT00390000018208 ENSGT00390000005914.a ENSGT00940000153997.b.a.b ENSGT01030000234556.a.b.a ENSGT00390000001322 ENSGT00510000047120 ENSGT00950000182900.C Marmotini_b ANCESTRAL SPECIES 28 ENSGT00940000159036 ENSGT00940000157380 ENSGT00390000004199 ENSGT00940000154374.b ENSGT00940000157774 ENSGT00940000161269 #11 ENSGT00940000156906 #15 ENSGT00390000008608 #16 ENSGT00940000162687 #17 ENSGT00390000002659 #18 ENSGT01020000230412.A.c.b.d #19 ENSGT00390000018059.b #20 ENSGT00940000160836.d #22 ENSGT00940000162904 ENSGT00440000039028 ENSGT00390000011644 ENSGT00950000183058.A.a ENSGT00390000003645 ENSGT00940000160248 ENSGT00940000159723 ENSGT00940000157831 ENSGT00390000018208 ENSGT00390000005914.a ENSGT00940000153997.b.a.b ENSGT01030000234556.a.b.a ENSGT00390000001322 ENSGT00510000047120.q ENSGT00950000182900.C Arctic ground squirrel MODERN SPECIES 426 PBX1 (ENSUPAG00010023003) LMX1A (ENSUPAG00010023005) RXRG (ENSUPAG00010023008) #11 LRRC52 (ENSUPAG00010023014) #15 ENSUPAG00010023016 #16 ENSUPAG00010023017 ENSUPAG00010023018 #17 TMCO1 (ENSUPAG00010023019) #18 UCK2 (ENSUPAG00010023020) #19 FAM78B (ENSUPAG00010023022) #20 ENSUPAG00010023023 #22 Squirrel MODERN SPECIES 81 RGS5 (ENSSTOG00000028740) NUF2 (ENSSTOG00000004673) PBX1 (ENSSTOG00000011504) LMX1A (ENSSTOG00000005189) RXRG (ENSSTOG00000010239) #11 LRRC52 (ENSSTOG00000011480) #15 MGST3 (ENSSTOG00000020274) #16 ENSSTOG00000022883 #17 TMCO1 (ENSSTOG00000008110) #18 UCK2 (ENSSTOG00000027307) #19 FAM78B (ENSSTOG00000011769) #20 ENSSTOG00000001862 #22 ENSSTOG00000025310 POGK (ENSSTOG00000025009) TADA1 (ENSSTOG00000006199) ILDR2 (ENSSTOG00000015430) MAEL (ENSSTOG00000015434) GPA33 (ENSSTOG00000010462) STYXL2 (ENSSTOG00000010472) POU2F1 (ENSSTOG00000005980) CD247 (ENSSTOG00000027006) ENSSTOG00000032814 RCSD1 (ENSSTOG00000027565) MPZL1 (ENSSTOG00000008875) ADCY10 (ENSSTOG00000003252) ENSSTOG00000034079 DCAF6 (ENSSTOG00000002913) Alpin marmot MODERN SPECIES 29 DDR2 (ENSMMMG00000021769) #12 HSD17B7 (ENSMMMG00000021761) #14 RGS4 (ENSMMMG00000021742) RGS5 (ENSMMMG00000021737) NUF2 (ENSMMMG00000021710) PBX1 (ENSMMMG00000021655) LMX1A (ENSMMMG00000021633) RXRG (ENSMMMG00000021608) #11 LRRC52 (ENSMMMG00000021599) #15 MGST3 (ENSMMMG00000021590) #16 ENSMMMG00000020694 #17 TMCO1 (ENSMMMG00000020681) #18 ENSMMMG00000020677 UCK2 (ENSMMMG00000020655) #19 FAM78B (ENSMMMG00000020648) #20 ENSMMMG00000020622 #22 ENSMMMG00000020613 POGK (ENSMMMG00000020598) TADA1 (ENSMMMG00000020592) ILDR2 (ENSMMMG00000020581) MAEL (ENSMMMG00000020549) GPA33 (ENSMMMG00000020543) ENSMMMG00000020541 POU2F1 (ENSMMMG00000020142) CD247 (ENSMMMG00000020139) ENSMMMG00000020132 RCSD1 (ENSMMMG00000020128) ENSMMMG00000020122 MPZL1 (ENSMMMG00000020120) ADCY10 (ENSMMMG00000020099) DCAF6 (ENSMMMG00000018848) Eurasian red squirrel DUPLICATION Eurasian red squirrel MODERN SPECIES 3 ENSSVLG00005009700 ENSSVLG00005009645 RGS5 (ENSSVLG00005009575) NUF2 (ENSSVLG00005009415) PBX1 (ENSSVLG00005009317) LMX1A (ENSSVLG00005009240) RXRG (ENSSVLG00005009146) #11 LRRC52 (ENSSVLG00005009106) #15 MGST3 (ENSSVLG00005009056) #16 ENSSVLG00005008971 #17 TMCO1 (ENSSVLG00005008920) #18 UCK2 (ENSSVLG00005008846) #19 FAM78B (ENSSVLG00005008813) #20 ENSSVLG00005008771 #22 ENSSVLG00005008667 #22 ENSSVLG00005008356 ENSSVLG00005008109 POGK (ENSSVLG00005008055) TADA1 (ENSSVLG00005008032) ILDR2 (ENSSVLG00005007571) MAEL (ENSSVLG00005007267) GPA33 (ENSSVLG00005007183) STYXL2 (ENSSVLG00005007140) ENSSVLG00005006838 CD247 (ENSSVLG00005006678) CREG1 (ENSSVLG00005006640) RCSD1 (ENSSVLG00005006562) ADCY10 (ENSSVLG00005006248) MPC2 (ENSSVLG00005006196) DCAF6 (ENSSVLG00005005682) Eurasian red squirrel MODERN SPECIES 3 ENSSVLG00005009700 ENSSVLG00005009645 RGS5 (ENSSVLG00005009575) NUF2 (ENSSVLG00005009415) PBX1 (ENSSVLG00005009317) LMX1A (ENSSVLG00005009240) RXRG (ENSSVLG00005009146) #11 LRRC52 (ENSSVLG00005009106) #15 MGST3 (ENSSVLG00005009056) #16 ENSSVLG00005008971 #17 TMCO1 (ENSSVLG00005008920) #18 UCK2 (ENSSVLG00005008846) #19 FAM78B (ENSSVLG00005008813) #20 ENSSVLG00005008771 #22 ENSSVLG00005008667 #22 ENSSVLG00005008356 ENSSVLG00005008109 POGK (ENSSVLG00005008055) TADA1 (ENSSVLG00005008032) ILDR2 (ENSSVLG00005007571) MAEL (ENSSVLG00005007267) GPA33 (ENSSVLG00005007183) STYXL2 (ENSSVLG00005007140) ENSSVLG00005006838 CD247 (ENSSVLG00005006678) CREG1 (ENSSVLG00005006640) RCSD1 (ENSSVLG00005006562) ADCY10 (ENSSVLG00005006248) MPC2 (ENSSVLG00005006196) Rodentia_B ANCESTRAL SPECIES ENSGT00940000154842.a.b #12 ENSGT00390000013340 #14 ENSGT00390000014067 ENSGT00940000159036 ENSGT00940000157380 ENSGT00390000004199 ENSGT00940000154374.b ENSGT00940000157774 ENSGT00940000161269 #11 ENSGT00940000156906 #15 ENSGT00390000008608 #16 ENSGT00940000162687 #17 ENSGT00390000002659 #18 ENSGT01020000230412.A.c.b.d #19 ENSGT00390000018059.b #20 ENSGT00940000160836.d #22 ENSGT00940000162904 ENSGT00440000039028 ENSGT00390000011644 ENSGT00950000185149 ENSGT00950000183058.A.a ENSGT00390000003645 ENSGT00940000160248 ENSGT00940000159723 ENSGT00940000157831 ENSGT00390000018208 ENSGT00390000005914.a ENSGT00940000153997.b.a.b ENSGT01030000234556.a.b.a ENSGT00390000001322 ENSGT00510000047120 Kangaroo rat MODERN SPECIES 376 Ddr2 (ENSDORG00000004970) #12 Hsd17b7 (ENSDORG00000004971) #14 Ccdc190 (ENSDORG00000004973) Rgs4 (ENSDORG00000008241) Rgs5 (ENSDORG00000025285) Nuf2 (ENSDORG00000010505) Pbx1 (ENSDORG00000012241) Lmx1a (ENSDORG00000014036) Rxrg (ENSDORG00000014034) #11 Lrrc52 (ENSDORG00000013852) #15 Mgst3 (ENSDORG00000005319) #16 Aldh9a1 (ENSDORG00000012670) #17 Tmco1 (ENSDORG00000024383) #18 Uck2 (ENSDORG00000024295) #19 Fam78b (ENSDORG00000026622) #20 Fmo9 (ENSDORG00000028508) #22 ENSDORG00000027210 ENSDORG00000027955 ENSDORG00000006822 Tada1 (ENSDORG00000006823) Ildr2 (ENSDORG00000001145) Mael (ENSDORG00000001149) Gpa33 (ENSDORG00000029392) Dusp27 (ENSDORG00000005388) Pou2f1 (ENSDORG00000011588) Cd247 (ENSDORG00000026345) Creg1 (ENSDORG00000002312) Rcsd1 (ENSDORG00000015873) Mpzl1 (ENSDORG00000015874) Adcy10 (ENSDORG00000015876) Mpc2 (ENSDORG00000015877) Myomorpha ANCESTRAL SPECIES 16 ENSGT00940000154842.a.b #12 ENSGT00390000013340 #14 ENSGT00390000014067 ENSGT00940000159036 ENSGT00940000157380 ENSGT00390000004199 ENSGT00940000154374.b ENSGT00940000157774 ENSGT00940000161269 #11 ENSGT00940000156906 #15 ENSGT00390000008608 #16 ENSGT00940000162687 #17 ENSGT00390000002659 #18 ENSGT01020000230412.A.c.b.d #19 ENSGT00390000018059.b #20 ENSGT00940000160836.d #22 ENSGT00940000162904 ENSGT00440000039028 ENSGT00390000011644 ENSGT00950000185149 ENSGT00950000183058.A.a ENSGT00390000003645 ENSGT00940000160248 ENSGT00940000159723 ENSGT00940000157831 ENSGT00390000018208 ENSGT00390000005914.a ENSGT00940000153997.b.a.b ENSGT01030000234556.a.b.a ENSGT00390000001322 ENSGT00510000047120 Muroidea ANCESTRAL SPECIES 9 ENSGT00940000154842.a.b #12 ENSGT00390000013340 #14 ENSGT00390000014067 ENSGT00940000159036 ENSGT00940000157380 ENSGT00390000004199 ENSGT00940000154374.b ENSGT00940000157774 ENSGT00940000161269 #11 ENSGT00940000156906 #15 ENSGT00390000008608 #16 ENSGT00940000162687 #17 ENSGT00390000002659 #18 ENSGT01020000230412.A.c.b.d #19 ENSGT00390000018059.b #20 ENSGT00940000160836.d #22 ENSGT00940000162904.d ENSGT00940000162904.c ENSGT00440000039028 ENSGT00390000011644 ENSGT00950000185149 ENSGT00950000183058.A.a ENSGT00390000003645 ENSGT00940000160248 ENSGT00940000159723 ENSGT00940000157831 ENSGT00390000018208 ENSGT00390000005914.a ENSGT00940000153997.b.a.b ENSGT01030000234556.a.b.a ENSGT00390000001322 Muroidea_A ANCESTRAL SPECIES 12 ENSGT00940000154842.a.b #12 ENSGT00390000013340 #14 ENSGT00390000014067 ENSGT00940000159036 ENSGT00940000157380 ENSGT00390000004199 ENSGT00940000154374.b ENSGT00940000157774 ENSGT00940000161269 #11 ENSGT00940000156906 #15 ENSGT00390000008608 #16 ENSGT00940000162687 #17 ENSGT00390000002659 #18 ENSGT01020000230412.A.c.b.d #19 ENSGT00390000018059.b #20 ENSGT00940000160836.d #22 ENSGT00940000162904.d ENSGT00940000162904.c ENSGT00440000039028 ENSGT00390000011644 ENSGT00950000185149 ENSGT00950000183058.A.a ENSGT00390000003645 ENSGT00940000160248 ENSGT00940000159723 ENSGT00940000157831 ENSGT00390000018208 ENSGT00390000005914.a ENSGT00940000153997.b.a.b ENSGT01030000234556.a.b.a ENSGT00390000001322 Cricetidae ANCESTRAL SPECIES 13 ENSGT00940000154842.a.b #12 ENSGT00390000013340 #14 ENSGT00390000014067 ENSGT00940000159036 ENSGT00940000157380 ENSGT00390000004199 ENSGT00940000154374.b ENSGT00940000157774 ENSGT00940000161269 #11 ENSGT00940000156906 #15 ENSGT00390000008608 #16 ENSGT00940000162687 #17 ENSGT00390000002659 #18 ENSGT01020000230412.A.c.b.d #19 ENSGT00390000018059.b #20 ENSGT00940000160836.d #22 ENSGT00940000162904.d ENSGT00940000162904.c ENSGT00440000039028 ENSGT00390000011644 ENSGT00950000183058.A.a ENSGT00390000003645 ENSGT00940000160248 ENSGT00940000159723 ENSGT00940000157831 ENSGT00390000018208 ENSGT00390000005914.a ENSGT00940000153997.b.a.b ENSGT01030000234556.a.b.a ENSGT00390000001322 ENSGT00510000047120 Cricetinae ANCESTRAL SPECIES 4 ENSGT00940000154842.a.b #12 ENSGT00390000013340 #14 ENSGT00390000014067 ENSGT00940000159036 ENSGT00940000157380 ENSGT00390000004199 ENSGT00940000154374.b ENSGT00940000157774 ENSGT00940000161269 #11 ENSGT00940000156906 #15 ENSGT00390000008608 #16 ENSGT00940000162687 #17 ENSGT00390000002659 #18 ENSGT01020000230412.A.c.b.d #19 ENSGT00390000018059.b #20 ENSGT00940000160836.d #22 ENSGT00940000162904.d ENSGT00440000039028 ENSGT00390000011644 ENSGT00950000183058.A.a ENSGT00390000003645 ENSGT00940000160248 ENSGT00940000159723 ENSGT00940000157831 ENSGT00390000018208 ENSGT00390000005914.a ENSGT00940000153997.b.a.b ENSGT01030000234556.a.b.a ENSGT00390000001322 ENSGT00510000047120 ENSGT00950000182900.C Chinese hamster chok1gshd MODERN SPECIES 2 Hsd17b7 (ENSCGRG00001012734) #14 Ccdc190 (ENSCGRG00001017352) Rgs4 (ENSCGRG00001021878) Rgs5 (ENSCGRG00001009987) Nuf2 (ENSCGRG00001014967) Pbx1 (ENSCGRG00001022276) Lmx1a (ENSCGRG00001014704) Rxrg (ENSCGRG00001019006) #11 Lrrc52 (ENSCGRG00001014921) #15 Mgst3 (ENSCGRG00001016115) #16 Aldh9a1 (ENSCGRG00001023734) #17 Tmco1 (ENSCGRG00001024372) #18 Uck2 (ENSCGRG00001005584) #19 ENSCGRG00001016705 Fam78b (ENSCGRG00001019514) #20 Fmo9 (ENSCGRG00001017191) #22 Gm4847 (ENSCGRG00001024799) Pogk (ENSCGRG00001017526) Tada1 (ENSCGRG00001019593) Ildr2 (ENSCGRG00001011480) Mael (ENSCGRG00001009188) Gpa33 (ENSCGRG00001023721) Dusp27 (ENSCGRG00001024829) Pou2f1 (ENSCGRG00001022456) Cd247 (ENSCGRG00001012304) Creg1 (ENSCGRG00001022812) Rcsd1 (ENSCGRG00001024246) Mpzl1 (ENSCGRG00001020501) Adcy10 (ENSCGRG00001005211) ENSCGRG00001009918 Dcaf6 (ENSCGRG00001018018) Golden Hamster MODERN SPECIES 644 Hsd17b7 (ENSMAUG00000021760) #14 Ccdc190 (ENSMAUG00000021696) Rgs4 (ENSMAUG00000018633) Rgs5 (ENSMAUG00000021837) Nuf2 (ENSMAUG00000020433) Pbx1 (ENSMAUG00000019850) Lmx1a (ENSMAUG00000018894) Rxrg (ENSMAUG00000019514) #11 Lrrc52 (ENSMAUG00000022044) #15 Mgst3 (ENSMAUG00000022162) #16 Aldh9a1 (ENSMAUG00000021995) #17 Tmco1 (ENSMAUG00000014853) #18 ENSMAUG00000011674 Uck2 (ENSMAUG00000005491) #19 Fam78b (ENSMAUG00000013378) #20 Fmo9 (ENSMAUG00000010673) #22 Gm4847 (ENSMAUG00000013180) Pogk (ENSMAUG00000015441) Tada1 (ENSMAUG00000006788) Ildr2 (ENSMAUG00000018271) Mael (ENSMAUG00000021599) ENSMAUG00000011801 Dusp27 (ENSMAUG00000001597) Pou2f1 (ENSMAUG00000018678) ENSMAUG00000020137 Creg1 (ENSMAUG00000003485) Rcsd1 (ENSMAUG00000022012) Mpzl1 (ENSMAUG00000021865) Adcy10 (ENSMAUG00000020332) Mpc2 (ENSMAUG00000014713) Dcaf6 (ENSMAUG00000002917) Cricetidae_B ANCESTRAL SPECIES 8 ENSGT00940000154842.a.b #12 ENSGT00390000013340 #14 ENSGT00390000014067 ENSGT00940000159036 ENSGT00940000157380 ENSGT00390000004199 ENSGT00940000154374.b ENSGT00940000157774 ENSGT00940000161269 #11 ENSGT00940000156906 #15 ENSGT00390000008608 #16 ENSGT00940000162687 #17 ENSGT00390000002659 #18 ENSGT01020000230412.A.c.b.d #19 ENSGT00390000018059.b #20 ENSGT00940000160836.d #22 ENSGT00940000162904.d ENSGT00940000162904.c ENSGT00440000039028 ENSGT00390000011644 ENSGT00950000183058.A.a ENSGT00390000003645 ENSGT00940000160248 ENSGT00940000159723 ENSGT00940000157831 ENSGT00390000018208 ENSGT00390000005914.a ENSGT00940000153997.b.a.b ENSGT01030000234556.a.b.a ENSGT00390000001322 ENSGT00510000047120 Northern American deer mouse MODERN SPECIES 2 Hsd17b7 (ENSPEMG00000022786) #14 Ccdc190 (ENSPEMG00000023644) Rgs4 (ENSPEMG00000031119) Rgs5 (ENSPEMG00000025824) Nuf2 (ENSPEMG00000023899) ENSPEMG00000019682 Pbx1 (ENSPEMG00000009084) Lmx1a (ENSPEMG00000016259) Rxrg (ENSPEMG00000013249) #11 Lrrc52 (ENSPEMG00000025049) #15 Mgst3 (ENSPEMG00000012628) #16 Aldh9a1 (ENSPEMG00000007235) #17 Tmco1 (ENSPEMG00000008521) #18 Uck2 (ENSPEMG00000011469) #19 Fam78b (ENSPEMG00000027973) #20 Fmo9 (ENSPEMG00000012442) #22 Gm4847 (ENSPEMG00000001986) Gm4846 (ENSPEMG00000014518) Pogk (ENSPEMG00000016935) Tada1 (ENSPEMG00000001422) Ildr2 (ENSPEMG00000010455) Mael (ENSPEMG00000028769) Gpa33 (ENSPEMG00000021697) Dusp27 (ENSPEMG00000023293) Pou2f1 (ENSPEMG00000026471) Cd247 (ENSPEMG00000022519) Creg1 (ENSPEMG00000021993) Rcsd1 (ENSPEMG00000022454) Mpzl1 (ENSPEMG00000022310) ENSPEMG00000030485 Adcy10 (ENSPEMG00000009112) Prairie vole MODERN SPECIES 153 Tmco1 (ENSMOCG00000000235) #18 Uck2 (ENSMOCG00000004403) #19 Fam78b (ENSMOCG00000011211) #20 Fmo9 (ENSMOCG00000012835) #22 Gm4847 (ENSMOCG00000000401) Gm4846 (ENSMOCG00000007775) ENSMOCG00000022763 Pogk (ENSMOCG00000005507) Tada1 (ENSMOCG00000014042) Ildr2 (ENSMOCG00000012795) Mael (ENSMOCG00000004042) ENSMOCG00000014318 Dusp27 (ENSMOCG00000011284) Pou2f1 (ENSMOCG00000004319) Cd247 (ENSMOCG00000000372) Creg1 (ENSMOCG00000016539) Rcsd1 (ENSMOCG00000008748) ENSMOCG00000014622 Adcy10 (ENSMOCG00000002950) Murinae ANCESTRAL SPECIES 11 ENSGT00940000154842.a.b #12 ENSGT00390000013340 #14 ENSGT00390000014067 ENSGT00940000159036 ENSGT00940000157380 ENSGT00390000004199 ENSGT00940000154374.b ENSGT00940000157774 ENSGT00940000161269 #11 ENSGT00940000156906 #15 ENSGT00390000008608 #16 ENSGT00940000162687 #17 ENSGT00390000002659 #18 ENSGT01020000230412.A.c.b.d #19 ENSGT00390000018059.b #20 ENSGT00940000160836.d #22 ENSGT00940000162904.d ENSGT00940000162904.c ENSGT00440000039028 ENSGT00390000011644 ENSGT00950000185149 ENSGT00950000183058.A.a ENSGT00390000003645 ENSGT00940000160248 ENSGT00940000159723 ENSGT00940000157831 ENSGT00390000018208 ENSGT00390000005914.a ENSGT00940000153997.b.a.b ENSGT01030000234556.a.b.a ENSGT00390000001322 Mus ANCESTRAL SPECIES 5 ENSGT00940000154842.a.b #12 ENSGT00390000013340 #14 ENSGT00390000014067 ENSGT00940000159036 ENSGT00940000157380 ENSGT00390000004199 ENSGT00940000154374.b ENSGT00940000157774 ENSGT00940000161269 #11 ENSGT00940000156906 #15 ENSGT00390000008608 #16 ENSGT00940000162687 #17 ENSGT00390000002659 #18 ENSGT01020000230412.A.c.b.d #19 ENSGT00390000018059.b #20 ENSGT00940000160836.d #22 ENSGT00940000162904.d ENSGT00940000162904.c ENSGT00440000039028 ENSGT00390000011644 ENSGT00950000185149 ENSGT00950000183058.A.a ENSGT00390000003645 ENSGT00940000160248 ENSGT00940000159723 ENSGT00940000157831 ENSGT00390000018208 ENSGT00390000005914.a ENSGT00940000153997.b.a.b ENSGT01030000234556.a.b.a ENSGT00390000001322 Mus_A ANCESTRAL SPECIES 5 ENSGT00940000154842.a.b #12 ENSGT00390000013340 #14 ENSGT00390000014067 ENSGT00940000159036 ENSGT00940000157380 ENSGT00390000004199 ENSGT00940000154374.b ENSGT00940000157774 ENSGT00940000161269 #11 ENSGT00940000156906 #15 ENSGT00390000008608.i #16 ENSGT00940000162687 #17 ENSGT00390000002659 #18 ENSGT01020000230412.A.c.b.d #19 ENSGT00390000018059.b #20 ENSGT00940000160836.d #22 ENSGT00940000162904.d ENSGT00940000162904.c ENSGT00440000039028 ENSGT00390000011644 ENSGT00950000185149 ENSGT00950000183058.A.a ENSGT00390000003645 ENSGT00940000160248 ENSGT00940000159723 ENSGT00940000157831 ENSGT00390000018208 ENSGT00390000005914.a ENSGT00940000153997.b.a.b ENSGT01030000234556.a.b.a ENSGT00390000001322 Mus_B ANCESTRAL SPECIES 7 ENSGT00940000154842.a.b #12 ENSGT00390000013340 #14 ENSGT00390000014067 ENSGT00940000159036 ENSGT00940000157380 ENSGT00390000004199 ENSGT00940000154374.b ENSGT00940000157774 ENSGT00940000161269 #11 ENSGT00940000156906 #15 ENSGT00390000008608.i #16 ENSGT00940000162687 #17 ENSGT00390000002659 #18 ENSGT01020000230412.A.c.b.d #19 ENSGT00390000018059.b #20 ENSGT00940000160836.d #22 ENSGT00940000162904.d ENSGT00940000162904.c ENSGT00440000039028 ENSGT00390000011644 ENSGT00950000185149 ENSGT00950000183058.A.a ENSGT00390000003645 ENSGT00940000160248 ENSGT00940000159723 ENSGT00940000157831 ENSGT00390000018208 ENSGT00390000005914.a ENSGT00940000153997.b.a.b ENSGT01030000234556.a.b.a ENSGT00390000001322 Mouse MODERN SPECIES Ddr2 (ENSMUSG00000026674) #12 Hsd17b7 (ENSMUSG00000026675) #14 Ccdc190 (ENSMUSG00000070532) Rgs4 (ENSMUSG00000038530) Rgs5 (ENSMUSG00000026678) Nuf2 (ENSMUSG00000026683) Pbx1 (ENSMUSG00000052534) Lmx1a (ENSMUSG00000026686) Rxrg (ENSMUSG00000015843) #11 Lrrc52 (ENSMUSG00000040485) #15 Mgst3 (ENSMUSG00000026688) #16 Aldh9a1 (ENSMUSG00000026687) #17 Tmco1 (ENSMUSG00000052428) #18 Uck2 (ENSMUSG00000026558) #19 Fam78b (ENSMUSG00000060568) #20 Fmo9 (ENSMUSG00000026560) #22 Gm4847 (ENSMUSG00000051081) Gm4846 (ENSMUSG00000086056) Pogk (ENSMUSG00000040596) Tada1 (ENSMUSG00000026563) Ildr2 (ENSMUSG00000040612) Mael (ENSMUSG00000040629) Gpa33 (ENSMUSG00000000544) Dusp27 (ENSMUSG00000026564) Pou2f1 (ENSMUSG00000026565) Cd247 (ENSMUSG00000005763) Creg1 (ENSMUSG00000040713) Rcsd1 (ENSMUSG00000040723) Mpzl1 (ENSMUSG00000026566) Adcy10 (ENSMUSG00000026567) Mpc2 (ENSMUSG00000026568) Mus_C ANCESTRAL SPECIES 1 ENSGT00940000154842.a.b #12 ENSGT00390000013340 #14 ENSGT00390000014067 ENSGT00940000159036 ENSGT00940000157380 ENSGT00390000004199 ENSGT00940000154374.b ENSGT00940000157774 ENSGT00940000161269 #11 ENSGT00940000156906 #15 ENSGT00390000008608.i #16 ENSGT00940000162687 #17 ENSGT00390000002659 #18 ENSGT01020000230412.A.c.b.d #19 ENSGT00390000018059.b #20 ENSGT00940000160836.d #22 ENSGT00940000162904.c ENSGT00440000039028 ENSGT00390000011644 ENSGT00950000185149 ENSGT00950000183058.A.a ENSGT00390000003645 ENSGT00940000160248 ENSGT00940000159723 ENSGT00940000157831 ENSGT00390000018208 ENSGT00390000005914.a ENSGT00940000153997.b.a.b ENSGT01030000234556.a.b.a ENSGT00390000001322 ENSGT00510000047120 Steppe mouse MODERN SPECIES 2687 Lrrc52 (ENSMSIG00000018585) #15 Mgst3 (ENSMSIG00000018561) #16 Aldh9a1 (ENSMSIG00000018542) #17 Tmco1 (ENSMSIG00000018533) #18 Uck2 (ENSMSIG00000018485) #19 ENSMSIG00000018427 Fam78b (ENSMSIG00000018417) #20 Fmo9 (ENSMSIG00000018384) #22 spretus MODERN SPECIES Ddr2 (MGP_SPRETEiJ_G0015641) #12 Hsd17b7 (MGP_SPRETEiJ_G0015640) #14 Ccdc190 (MGP_SPRETEiJ_G0015639) Rgs4 (MGP_SPRETEiJ_G0015638) Rgs5 (MGP_SPRETEiJ_G0015637) Nuf2 (MGP_SPRETEiJ_G0015636) Pbx1 (MGP_SPRETEiJ_G0015635) Lmx1a (MGP_SPRETEiJ_G0015634) Rxrg (MGP_SPRETEiJ_G0015633) #11 Lrrc52 (MGP_SPRETEiJ_G0015632) #15 Mgst3 (MGP_SPRETEiJ_G0015631) #16 Aldh9a1 (MGP_SPRETEiJ_G0015630) #17 Tmco1 (MGP_SPRETEiJ_G0015629) #18 Uck2 (MGP_SPRETEiJ_G0015628) #19 Fam78b (MGP_SPRETEiJ_G0015627) #20 Fmo9 (MGP_SPRETEiJ_G0015626) #22 Gm4846 (MGP_SPRETEiJ_G0015625) Pogk (MGP_SPRETEiJ_G0015624) Tada1 (MGP_SPRETEiJ_G0015623) Ildr2 (MGP_SPRETEiJ_G0015622) Mael (MGP_SPRETEiJ_G0015621) Gpa33 (MGP_SPRETEiJ_G0015620) Dusp27 (MGP_SPRETEiJ_G0015619) Pou2f1 (MGP_SPRETEiJ_G0015618) Cd247 (MGP_SPRETEiJ_G0015617) Creg1 (MGP_SPRETEiJ_G0015616) Rcsd1 (MGP_SPRETEiJ_G0015615) Mpzl1 (MGP_SPRETEiJ_G0015614) Adcy10 (MGP_SPRETEiJ_G0015613) Mpc2 (MGP_SPRETEiJ_G0015612) Dcaf6 (MGP_SPRETEiJ_G0015611) Ryukyu mouse MODERN SPECIES Ddr2 (MGP_CAROLIEiJ_G0014835) #12 Hsd17b7 (MGP_CAROLIEiJ_G0014834) #14 Ccdc190 (MGP_CAROLIEiJ_G0014833) Rgs4 (MGP_CAROLIEiJ_G0014832) Rgs5 (MGP_CAROLIEiJ_G0014831) Nuf2 (MGP_CAROLIEiJ_G0014830) Pbx1 (MGP_CAROLIEiJ_G0014829) Lmx1a (MGP_CAROLIEiJ_G0014828) Rxrg (MGP_CAROLIEiJ_G0014827) #11 Lrrc52 (MGP_CAROLIEiJ_G0014826) #15 Mgst3 (MGP_CAROLIEiJ_G0014825) #16 Aldh9a1 (MGP_CAROLIEiJ_G0014824) #17 MGP_CAROLIEiJ_G0014823 #18 Uck2 (MGP_CAROLIEiJ_G0014822) #19 Fam78b (MGP_CAROLIEiJ_G0014821) #20 Fmo9 (MGP_CAROLIEiJ_G0014820) #22 MGP_CAROLIEiJ_G0014819 Gm4846 (MGP_CAROLIEiJ_G0014818) Pogk (MGP_CAROLIEiJ_G0014817) MGP_CAROLIEiJ_G0014816 Ildr2 (MGP_CAROLIEiJ_G0014815) Mael (MGP_CAROLIEiJ_G0014814) Gpa33 (MGP_CAROLIEiJ_G0014813) Dusp27 (MGP_CAROLIEiJ_G0014812) Pou2f1 (MGP_CAROLIEiJ_G0014811) MGP_CAROLIEiJ_G0014810 Creg1 (MGP_CAROLIEiJ_G0014809) Rcsd1 (MGP_CAROLIEiJ_G0014808) Mpzl1 (MGP_CAROLIEiJ_G0014807) Adcy10 (MGP_CAROLIEiJ_G0014806) Mpc2 (MGP_CAROLIEiJ_G0014805) Shrew mouse MODERN SPECIES 18 Ddr2 (MGP_PahariEiJ_G0028072) #12 Hsd17b7 (MGP_PahariEiJ_G0028071) #14 Ccdc190 (MGP_PahariEiJ_G0028070) Rgs4 (MGP_PahariEiJ_G0028069) Rgs5 (MGP_PahariEiJ_G0028068) Nuf2 (MGP_PahariEiJ_G0028067) Pbx1 (MGP_PahariEiJ_G0028066) Lmx1a (MGP_PahariEiJ_G0028065) Rxrg (MGP_PahariEiJ_G0028064) #11 Lrrc52 (MGP_PahariEiJ_G0028063) #15 Mgst3 (MGP_PahariEiJ_G0028062) #16 Aldh9a1 (MGP_PahariEiJ_G0028061) #17 MGP_PahariEiJ_G0028060 #18 Uck2 (MGP_PahariEiJ_G0028059) #19 Fam78b (MGP_PahariEiJ_G0028058) #20 Fmo9 (MGP_PahariEiJ_G0028057) #22 Gm4847 (MGP_PahariEiJ_G0028056) Gm4846 (MGP_PahariEiJ_G0028055) MGP_PahariEiJ_G0028054 Tada1 (MGP_PahariEiJ_G0028053) Ildr2 (MGP_PahariEiJ_G0028052) Mael (MGP_PahariEiJ_G0028051) Gpa33 (MGP_PahariEiJ_G0028050) Dusp27 (MGP_PahariEiJ_G0028049) Pou2f1 (MGP_PahariEiJ_G0028048) Cd247 (MGP_PahariEiJ_G0028047) Creg1 (MGP_PahariEiJ_G0028046) Rcsd1 (MGP_PahariEiJ_G0028045) Mpzl1 (MGP_PahariEiJ_G0028044) Adcy10 (MGP_PahariEiJ_G0028043) Mpc2 (MGP_PahariEiJ_G0028042) Rat MODERN SPECIES 4 ENSRNOG00000033515 Ccdc190 (ENSRNOG00000025005) Rgs4 (ENSRNOG00000002773) Rgs5 (ENSRNOG00000002730) ENSRNOG00000066769 Nuf2 (ENSRNOG00000002711) Pbx1 (ENSRNOG00000070119) Lmx1a (ENSRNOG00000004642) Rxrg (ENSRNOG00000004537) #11 Lrrc52 (ENSRNOG00000004356) #15 Mgst3 (ENSRNOG00000004245) #16 Aldh9a1 (ENSRNOG00000004027) #17 Tmco1 (ENSRNOG00000003928) #18 Uck2 (ENSRNOG00000003917) #19 Fam78b (ENSRNOG00000068017) #20 Fmo9 (ENSRNOG00000025119) #22 LOC685351 (ENSRNOG00000038499) Fmo13 (ENSRNOG00000043014) Pogk (ENSRNOG00000032058) Tada1 (ENSRNOG00000003816) ENSRNOG00000068309 Ildr2 (ENSRNOG00000025151) Mael (ENSRNOG00000003790) Gpa33 (ENSRNOG00000003740) Styxl2 (ENSRNOG00000003722) Pou2f1 (ENSRNOG00000003581) Cd247 (ENSRNOG00000003298) Creg1 (ENSRNOG00000003291) Rcsd1 (ENSRNOG00000003283) Mpzl1 (ENSRNOG00000003248) Adcy10 (ENSRNOG00000053410) Upper Galilee mountains blind mole rat MODERN SPECIES 1427 Rgs4 (ENSNGAG00000023435) Rgs5 (ENSNGAG00000021650) Nuf2 (ENSNGAG00000001940) Pbx1 (ENSNGAG00000017311) Lmx1a (ENSNGAG00000021747) Rxrg (ENSNGAG00000017760) #11 Lrrc52 (ENSNGAG00000023809) #15 Mgst3 (ENSNGAG00000014946) #16 ENSNGAG00000009537 #17 Tmco1 (ENSNGAG00000011588) #18 Uck2 (ENSNGAG00000007874) #19 Fam78b (ENSNGAG00000010631) #20 Fmo9 (ENSNGAG00000022673) #22 Gm4847 (ENSNGAG00000022387) Gm4846 (ENSNGAG00000020962) Pogk (ENSNGAG00000008037) Tada1 (ENSNGAG00000014924) Ildr2 (ENSNGAG00000020467) Mael (ENSNGAG00000013179) Gpa33 (ENSNGAG00000020099) Dusp27 (ENSNGAG00000021619) Lesser Egyptian jerboa MODERN SPECIES 46 Pbx1 (ENSJJAG00000011554) Lmx1a (ENSJJAG00000010717) Rxrg (ENSJJAG00000016323) #11 Lrrc52 (ENSJJAG00000015515) #15 Mgst3 (ENSJJAG00000015338) #16 Aldh9a1 (ENSJJAG00000020233) #17 Tmco1 (ENSJJAG00000013455) #18 Uck2 (ENSJJAG00000015704) #19 Fam78b (ENSJJAG00000012530) #20 Fmo9 (ENSJJAG00000014108) #22 ENSJJAG00000017057 ENSJJAG00000012254 ENSJJAG00000001988 Pogk (ENSJJAG00000022257) Tada1 (ENSJJAG00000011010) Ildr2 (ENSJJAG00000007584) Mael (ENSJJAG00000011625) ENSJJAG00000004505 Dusp27 (ENSJJAG00000024394) ENSJJAG00000019954 Pou2f1 (ENSJJAG00000010528) Cd247 (ENSJJAG00000011957) ENSJJAG00000019724 Sp5 (ENSJJAG00000015843) Myo3b (ENSJJAG00000020504) Lagomorpha ANCESTRAL SPECIES 1 ENSGT00940000153464.A.b ENSGT00390000013340 #14 ENSGT00390000014067 ENSGT00940000159036 ENSGT00940000157380 ENSGT00390000004199 ENSGT00940000154374.b ENSGT00940000157774 ENSGT00940000161269 #11 ENSGT00940000156906 #15 ENSGT00390000008608 #16 ENSGT00940000162687 #17 ENSGT00390000002659 #18 ENSGT01020000230412.A.c.b.d #19 ENSGT00390000018059.b #20 ENSGT00940000160836.d #22 ENSGT00940000162904 ENSGT00440000039028 ENSGT00390000011644 ENSGT00950000183058.A.a ENSGT00390000003645 ENSGT00940000160248 ENSGT00940000159723 ENSGT00940000157831 ENSGT00390000018208 ENSGT00390000005914.a ENSGT00940000153997.b.a.b ENSGT01030000234556.a.b.a ENSGT00390000001322 ENSGT00510000047120 ENSGT00950000182900.C Rabbit MODERN SPECIES 4 ENSOCUG00000023193 RGS4 (ENSOCUG00000005204) RGS5 (ENSOCUG00000001169) NUF2 (ENSOCUG00000001171) PBX1 (ENSOCUG00000007609) LMX1A (ENSOCUG00000005509) RXRG (ENSOCUG00000005512) #11 LRRC52 (ENSOCUG00000005518) #15 MGST3 (ENSOCUG00000010376) #16 ENSOCUG00000010380 #17 ENSOCUG00000008441 #18 UCK2 (ENSOCUG00000008446) #19 ENSOCUG00000009904 FAM78B (ENSOCUG00000001178) #20 ENSOCUG00000030560 ENSOCUG00000000379 #22 ENSOCUG00000023460 POGK (ENSOCUG00000028218) TADA1 (ENSOCUG00000010561) ENSOCUG00000005839 MAEL (ENSOCUG00000005848) GPA33 (ENSOCUG00000025603) STYXL2 (ENSOCUG00000006203) ENSOCUG00000035782 POU2F1 (ENSOCUG00000015479) ENSOCUG00000027626 CREG1 (ENSOCUG00000017651) RCSD1 (ENSOCUG00000002251) MPZL1 (ENSOCUG00000002259) ADCY10 (ENSOCUG00000002264) ENSOCUG00000004470 Tree shrew MODERN SPECIES 8331 ENSTBEG00000000529 ENSTBEG00000000574 #22 Laurasiatheria ANCESTRAL SPECIES ENSGT00940000160836.d #22 Laurasiatheria_a ANCESTRAL SPECIES ENSGT00940000160836.d #22 Artiodactyla ANCESTRAL SPECIES ENSGT00940000160836.d #22 Artiodactyla_a ANCESTRAL SPECIES ENSGT00940000160836.d #22 Camelidae ANCESTRAL SPECIES 6 ENSGT00940000154842.a.b #12 ENSGT00390000013340 #14 ENSGT00390000014067 ENSGT00940000159036 ENSGT00940000157380 ENSGT00390000004199 ENSGT00940000154374.b ENSGT00940000157774 ENSGT00940000161269 #11 ENSGT00940000156906 #15 ENSGT00390000008608 #16 ENSGT00940000162687 #17 ENSGT00390000002659 #18 ENSGT01020000230412.A.c.b.d #19 ENSGT00390000018059.b #20 ENSGT00940000160836.d #22 ENSGT00440000039028 ENSGT00390000011644 ENSGT00950000183058.A.a ENSGT00390000003645 ENSGT00940000160248 ENSGT00940000159723 ENSGT00940000157831 ENSGT00390000018208 ENSGT00390000005914.a ENSGT00940000153997.b.a.b ENSGT01030000234556.a.b.a ENSGT00390000001322 ENSGT00510000047120 ENSGT00950000182900.C ENSGT00940000157829 Arabian camel MODERN SPECIES 13 HSD17B7 (ENSCDRG00005004054) #14 CCDC190 (ENSCDRG00005004083) RGS4 (ENSCDRG00005004118) RGS5 (ENSCDRG00005004164) NUF2 (ENSCDRG00005004229) ENSCDRG00005004309 ENSCDRG00005004337 LMX1A (ENSCDRG00005004381) RXRG (ENSCDRG00005004406) #11 LRRC52 (ENSCDRG00005004441) #15 MGST3 (ENSCDRG00005004470) #16 ENSCDRG00005004490 #17 TMCO1 (ENSCDRG00005004596) #18 UCK2 (ENSCDRG00005004673) #19 FAM78B (ENSCDRG00005004795) #20 ENSCDRG00005004817 #22 POGK (ENSCDRG00005004914) TADA1 (ENSCDRG00005004923) ILDR2 (ENSCDRG00005004956) MAEL (ENSCDRG00005005084) GPA33 (ENSCDRG00005005166) STYXL2 (ENSCDRG00005005183) POU2F1 (ENSCDRG00005005211) CD247 (ENSCDRG00005005314) CREG1 (ENSCDRG00005005365) RCSD1 (ENSCDRG00005005407) MPZL1 (ENSCDRG00005005443) ADCY10 (ENSCDRG00005005498) MPC2 (ENSCDRG00005005706) DCAF6 (ENSCDRG00005005798) GPR161 (ENSCDRG00005007590) Alpaca MODERN SPECIES 6099 ENSVPAG00000011523 #22 Artiodactyla_b ANCESTRAL SPECIES ENSGT00940000160836.d #22 Pecora ANCESTRAL SPECIES ENSGT00940000160836.d #22 Percora_a ANCESTRAL SPECIES ENSGT00940000160836.d #22 Siberian musk deer MODERN SPECIES 166 PBX1 (ENSMMSG00000000174) LMX1A (ENSMMSG00000000094) RXRG (ENSMMSG00000000066) #11 LRRC52 (ENSMMSG00000000023) #15 MGST3 (ENSMMSG00000020347) #16 ENSMMSG00000020315 ENSMMSG00000020287 #17 TMCO1 (ENSMMSG00000020229) #18 UCK2 (ENSMMSG00000020174) #19 FAM78B (ENSMMSG00000020152) #20 ENSMMSG00000018130 ENSMMSG00000018006 ENSMMSG00000017937 #22 POGK (ENSMMSG00000017901) TADA1 (ENSMMSG00000017875) ENSMMSG00000017839 ENSMMSG00000017800 ILDR2 (ENSMMSG00000016487) MAEL (ENSMMSG00000016220) GPA33 (ENSMMSG00000016152) STYXL2 (ENSMMSG00000016137) POU2F1 (ENSMMSG00000015429) CD247 (ENSMMSG00000015326) CREG1 (ENSMMSG00000015297) RCSD1 (ENSMMSG00000015281) MPZL1 (ENSMMSG00000015228) ADCY10 (ENSMMSG00000014960) MPC2 (ENSMMSG00000014930) Laurasiatheria_b ANCESTRAL SPECIES ENSGT00940000159036 ENSGT00940000157380 ENSGT00390000004199 ENSGT00940000163762.a.a ENSGT00940000154374.b ENSGT00940000157774 ENSGT00940000161269 #11 ENSGT00940000156906 #15 ENSGT00390000008608 #16 ENSGT00940000162687 #17 ENSGT00940000163309 ENSGT00390000002659 #18 ENSGT01020000230412.A.c.b.d #19 ENSGT00390000018059.b #20 ENSGT00940000162904 ENSGT00940000160836.d #22 ENSGT00440000039028 ENSGT00390000011644 ENSGT00950000185149 ENSGT00950000183058.A.a ENSGT00390000003645 ENSGT00940000160248 ENSGT00940000159723 ENSGT00940000157831 ENSGT00390000018208 ENSGT00390000005914.a ENSGT00940000153997.b.a.b ENSGT01030000234556.a.b.a ENSGT00390000001322 ENSGT00510000047120 ENSGT00950000182900.C Laurasiatheria_c ANCESTRAL SPECIES ENSGT00390000013340 #14 ENSGT00390000014067 ENSGT00940000159036 ENSGT00940000157380 ENSGT00390000004199 ENSGT00940000154374.b ENSGT00940000157774 ENSGT00940000161269 #11 ENSGT00940000156906 #15 ENSGT00390000008608 #16 ENSGT00940000162687 #17 ENSGT00390000002659 #18 ENSGT01020000230412.A.c.b.d #19 ENSGT00390000018059.b #20 ENSGT00940000162904 ENSGT00940000160836.d #22 ENSGT00440000039028 ENSGT00390000011644 ENSGT00950000183058.A.a ENSGT00950000185149 ENSGT00390000003645 ENSGT00940000160248 ENSGT00940000159723 ENSGT00940000157831 ENSGT00390000018208 ENSGT00390000005914.a ENSGT00940000153997.b.a.b ENSGT01030000234556.a.b.a ENSGT00390000001322 ENSGT00510000047120 ENSGT00950000182900.C Chiroptera ANCESTRAL SPECIES 22 ENSGT00390000013340 #14 ENSGT00390000014067 ENSGT00940000159036 ENSGT00940000157380 ENSGT00390000004199 ENSGT00940000154374.b ENSGT00940000157774 ENSGT00940000161269 #11 ENSGT00940000156906 #15 ENSGT00390000008608 #16 ENSGT00940000162687 #17 ENSGT00940000163309 ENSGT00390000002659 #18 ENSGT01020000230412.A.c.b.d #19 ENSGT00390000018059.b #20 ENSGT00940000160836.d #22 ENSGT00440000039028 ENSGT00390000011644 ENSGT00950000183058.A.a ENSGT00390000003645 ENSGT00940000160248 ENSGT00940000159723 ENSGT00940000157831 ENSGT00390000018208 ENSGT00390000005914.a ENSGT00940000153997.b.a.b ENSGT01030000234556.a.b.a ENSGT00390000001322 ENSGT00510000047120 ENSGT00950000182900.C ENSGT00940000157829 Microchiroptera ANCESTRAL SPECIES 22 ENSGT00940000154842.a.b #12 ENSGT00390000013340 #14 ENSGT00390000014067 ENSGT00940000159036 ENSGT00940000157380 ENSGT00390000004199 ENSGT00940000154374.b ENSGT00940000157774 ENSGT00940000161269 #11 ENSGT00940000156906 #15 ENSGT00390000008608 #16 ENSGT00940000162687 #17 ENSGT00390000002659 #18 ENSGT01020000230412.A.c.b.d #19 ENSGT00390000018059.b #20 ENSGT00940000160836.d #22 ENSGT00440000039028 ENSGT00390000011644 ENSGT00950000183058.A.a ENSGT00390000003645 ENSGT00940000160248 ENSGT00940000159723 ENSGT00940000157831 ENSGT00390000018208 ENSGT00390000005914.a ENSGT00940000153997.b.a.b ENSGT01030000234556.a.b.a ENSGT00390000001322 ENSGT00510000047120 ENSGT00950000182900.C ENSGT00940000157829 Greater horseshoe bat MODERN SPECIES 14 DDR2 (ENSRFEG00010016034) #12 HSD17B7 (ENSRFEG00010016070) #14 ENSRFEG00010016138 RGS4 (ENSRFEG00010016213) RGS5 (ENSRFEG00010016319) NUF2 (ENSRFEG00010016436) PBX1 (ENSRFEG00010016558) LMX1A (ENSRFEG00010016928) RXRG (ENSRFEG00010016975) #11 LRRC52 (ENSRFEG00010017050) #15 ENSRFEG00010017103 #16 ENSRFEG00010017132 #17 TMCO1 (ENSRFEG00010017188) #18 UCK2 (ENSRFEG00010017265) #19 FAM78B (ENSRFEG00010017400) #20 ENSRFEG00010017446 #22 POGK (ENSRFEG00010017877) TADA1 (ENSRFEG00010017911) ENSRFEG00010017971 MAEL (ENSRFEG00010018036) GPA33 (ENSRFEG00010018361) STYXL2 (ENSRFEG00010018371) ENSRFEG00010018402 ENSRFEG00010018449 CD247 (ENSRFEG00010018481) CREG1 (ENSRFEG00010018544) RCSD1 (ENSRFEG00010018588) ENSRFEG00010018662 ADCY10 (ENSRFEG00010018785) MPC2 (ENSRFEG00010019264) DCAF6 (ENSRFEG00010019445) Atlantogenata ANCESTRAL SPECIES ENSGT00940000160836.d #22 Afrotheria ANCESTRAL SPECIES ENSGT00940000160836.d #22 Tenrec MODERN SPECIES 16541 ENSETEG00000003816 ENSETEG00000003812 #22 Marsupialia ANCESTRAL SPECIES 3 ENSGT00390000014067 ENSGT00940000159036 ENSGT00940000157380 ENSGT00940000154374.b ENSGT00940000157774 ENSGT00940000161269 #11 ENSGT00940000156906 #15 ENSGT00390000008608 #16 ENSGT00940000162687 #17 ENSGT00940000163309 ENSGT00390000002659 #18 ENSGT01020000230412.A.c.b.d #19 ENSGT00390000018059.b #20 ENSGT00940000162904.a.b ENSGT00940000162904.a.a ENSGT00940000160836.d #22 ENSGT00940000162904.b ENSGT00440000039028 ENSGT00390000011644 ENSGT00950000183058.A.a ENSGT00390000003645 ENSGT00940000160248 ENSGT00940000159723 ENSGT00940000157831 ENSGT00390000018208 ENSGT00390000005914.a ENSGT00940000153997.b.a.b ENSGT00390000001322 ENSGT00510000047120 ENSGT00950000182900.C ENSGT00940000157829 Marsupialia_b ANCESTRAL SPECIES 6 ENSGT00390000013340 #14 ENSGT00390000014067 ENSGT00940000159036 ENSGT00940000157380 ENSGT00940000154374.b ENSGT00940000157774 ENSGT00940000161269 #11 ENSGT00940000156906 #15 ENSGT00390000008608 #16 ENSGT00940000163309 ENSGT00390000002659 #18 ENSGT01020000230412.A.c.b.d #19 ENSGT00390000018059.b #20 ENSGT00940000162904.a.b ENSGT00940000162904.a.a ENSGT00940000160836.d #22 ENSGT00940000162904.b ENSGT00440000039028 ENSGT00390000011644 ENSGT00950000183058.A.a ENSGT00390000003645 ENSGT00940000160248 ENSGT00940000159723 ENSGT00940000157831 ENSGT00390000018208 ENSGT00390000005914.a ENSGT00940000153997.b.a.b ENSGT00390000001322 ENSGT00510000047120 ENSGT00950000182900.C ENSGT00940000157829 Diprotodontia ANCESTRAL SPECIES 7 ENSGT00390000013340 #14 ENSGT00390000014067 ENSGT00940000159036 ENSGT00940000157380 ENSGT00940000154374.b ENSGT00940000157774 ENSGT00940000161269 #11 ENSGT00940000156906 #15 ENSGT00390000008608 #16 ENSGT00940000163309 ENSGT00390000002659 #18 ENSGT01020000230412.A.c.b.d #19 ENSGT00390000018059.b #20 ENSGT00940000162904.a.b ENSGT00940000162904.a.a ENSGT00940000160836.d #22 ENSGT00940000162904.b ENSGT00440000039028 ENSGT00390000011644 ENSGT00950000183058.A.a ENSGT00390000003645 ENSGT00940000160248 ENSGT00940000159723 ENSGT00940000157831 ENSGT00390000018208 ENSGT00390000005914.a ENSGT00940000153997.b.a.b ENSGT00390000001322 ENSGT00510000047120 ENSGT00950000182900.C ENSGT00940000157829 Diprotodontia_a ANCESTRAL SPECIES 3 ENSGT00390000013340 #14 ENSGT00390000014067 ENSGT00940000159036 ENSGT00940000157380 ENSGT00940000154374.b ENSGT00940000157774 ENSGT00940000161269 #11 ENSGT00940000156906 #15 ENSGT00390000008608 #16 ENSGT00940000163309 ENSGT00390000002659 #18 ENSGT01020000230412.A.c.b.d #19 ENSGT00390000018059.b #20 ENSGT00940000162904.a.b ENSGT00940000162904.a.a ENSGT00940000160836.d #22 ENSGT00940000162904.b ENSGT00440000039028 ENSGT00390000011644 ENSGT00950000183058.A.a ENSGT00390000003645 ENSGT00940000160248 ENSGT00940000159723 ENSGT00940000157831 ENSGT00390000018208 ENSGT00390000005914.a ENSGT00940000153997.b.a.b ENSGT00390000001322 ENSGT00510000047120 ENSGT00950000182900.C ENSGT00940000157829 Common wonbat MODERN SPECIES 1026 RGS5 (ENSVURG00010002460) ENSVURG00010002469 PBX1 (ENSVURG00010002505) LMX1A (ENSVURG00010002540) ENSVURG00010002578 #11 ENSVURG00010002587 #11 LRRC52 (ENSVURG00010002610) #15 MGST3 (ENSVURG00010002620) #16 ALDH9A1 (ENSVURG00010002635) TMCO1 (ENSVURG00010002648) #18 UCK2 (ENSVURG00010002670) #19 FAM78B (ENSVURG00010002709) #20 ENSVURG00010002725 ENSVURG00010002737 ENSVURG00010002751 ENSVURG00010002905 #22 ENSVURG00010003456 POGK (ENSVURG00010003468) TADA1 (ENSVURG00010003474) ILDR2 (ENSVURG00010003546) MAEL (ENSVURG00010003618) GPA33 (ENSVURG00010003648) STYXL2 (ENSVURG00010003658) POU2F1 (ENSVURG00010003684) CD247 (ENSVURG00010003723) CREG1 (ENSVURG00010003741) ENSVURG00010003782 ADCY10 (ENSVURG00010003815) MPC2 (ENSVURG00010003929) DCAF6 (ENSVURG00010003937) GPR161 (ENSVURG00010003979) koala MODERN SPECIES 362 LRRC52 (ENSPCIG00000037326) #15 MGST3 (ENSPCIG00000029987) #16 ALDH9A1 (ENSPCIG00000029991) TMCO1 (ENSPCIG00000009465) #18 UCK2 (ENSPCIG00000029993) #19 FAM78B (ENSPCIG00000029995) #20 ENSPCIG00000029996 ENSPCIG00000030012 #22 ENSPCIG00000034154 Tasmanian devil MODERN SPECIES 3 HSD17B7 (ENSSHAG00000014052) #14 ENSSHAG00000014153 RGS4 (ENSSHAG00000015164) RGS5 (ENSSHAG00000015337) ENSSHAG00000026214 ENSSHAG00000012750 LMX1A (ENSSHAG00000014535) RXRG (ENSSHAG00000015367) #11 LRRC52 (ENSSHAG00000016033) #15 MGST3 (ENSSHAG00000016309) #16 ENSSHAG00000016425 #17 TMCO1 (ENSSHAG00000020802) #18 UCK2 (ENSSHAG00000031760) #19 FAM78B (ENSSHAG00000031390) #20 ENSSHAG00000017869 ENSSHAG00000017927 #22 ENSSHAG00000018004 POGK (ENSSHAG00000018112) TADA1 (ENSSHAG00000021701) ILDR2 (ENSSHAG00000018234) MAEL (ENSSHAG00000018323) GPA33 (ENSSHAG00000018367) STYXL2 (ENSSHAG00000018419) POU2F1 (ENSSHAG00000018562) CD247 (ENSSHAG00000023134) CREG1 (ENSSHAG00000031715) RCSD1 (ENSSHAG00000018797) ADCY10 (ENSSHAG00000018832) ENSSHAG00000024363 DCAF6 (ENSSHAG00000018883) GPR161 (ENSSHAG00000018911) Opossum MODERN SPECIES 1 RGS5 (ENSMODG00000001208) ENSMODG00000048722 PBX1 (ENSMODG00000001238) LMX1A (ENSMODG00000001270) RXRG (ENSMODG00000001291) #11 ENSMODG00000040049 ENSMODG00000001296 #15 MGST3 (ENSMODG00000001305) #16 ENSMODG00000001321 #17 TMCO1 (ENSMODG00000001335) #18 UCK2 (ENSMODG00000001349) #19 FAM78B (ENSMODG00000001360) #20 ENSMODG00000029739 ENSMODG00000044511 ENSMODG00000001424 ENSMODG00000001609 #22 ENSMODG00000025655 POGK (ENSMODG00000001618) TADA1 (ENSMODG00000001625) ILDR2 (ENSMODG00000002467) MAEL (ENSMODG00000002482) GPA33 (ENSMODG00000002491) STYXL2 (ENSMODG00000002519) ENSMODG00000002572 CD247 (ENSMODG00000002586) CREG1 (ENSMODG00000045299) RCSD1 (ENSMODG00000002597) ADCY10 (ENSMODG00000002779) MPC2 (ENSMODG00000039319) DCAF6 (ENSMODG00000002855) GPR161 (ENSMODG00000002870) Platypus DUPLICATION Platypus MODERN SPECIES 7 IGSF11 (ENSOANG00000044874) HSD17B7 (ENSOANG00000048102) #14 RGS5 (ENSOANG00000044194) RGS4 (ENSOANG00000046116) NUF2 (ENSOANG00000045469) PBX1 (ENSOANG00000006908) LMX1A (ENSOANG00000043211) RXRG (ENSOANG00000038239) #11 ENSOANG00000005493 #15 ENSOANG00000005492 #16 ALDH9A1 (ENSOANG00000005491) TMCO1 (ENSOANG00000005489) #18 ENSOANG00000047859 FAM78B (ENSOANG00000013781) #20 ENSOANG00000005487 #22 ENSOANG00000005486 #22 POGK (ENSOANG00000046773) TADA1 (ENSOANG00000036382) ILDR2 (ENSOANG00000003872) ENSOANG00000048096 ENSOANG00000039046 STYXL2 (ENSOANG00000041753) ENSOANG00000009376 ENSOANG00000041693 CD247 (ENSOANG00000044103) CREG1 (ENSOANG00000043345) ENSOANG00000003880 MPZL1 (ENSOANG00000003882) ADCY10 (ENSOANG00000003885) MPC2 (ENSOANG00000037645) DCAF6 (ENSOANG00000003887) Platypus MODERN SPECIES 7 UPK1B (ENSOANG00000049892) IGSF11 (ENSOANG00000044874) HSD17B7 (ENSOANG00000048102) #14 RGS5 (ENSOANG00000044194) RGS4 (ENSOANG00000046116) NUF2 (ENSOANG00000045469) PBX1 (ENSOANG00000006908) LMX1A (ENSOANG00000043211) RXRG (ENSOANG00000038239) #11 ENSOANG00000005493 #15 ENSOANG00000005492 #16 ALDH9A1 (ENSOANG00000005491) TMCO1 (ENSOANG00000005489) #18 ENSOANG00000047859 FAM78B (ENSOANG00000013781) #20 ENSOANG00000005487 #22 ENSOANG00000005486 #22 POGK (ENSOANG00000046773) TADA1 (ENSOANG00000036382) ILDR2 (ENSOANG00000003872) ENSOANG00000048096 ENSOANG00000039046 STYXL2 (ENSOANG00000041753) ENSOANG00000009376 ENSOANG00000041693 CD247 (ENSOANG00000044103) CREG1 (ENSOANG00000043345) ENSOANG00000003880 MPZL1 (ENSOANG00000003882) ADCY10 (ENSOANG00000003885) MPC2 (ENSOANG00000037645) Sauria ANCESTRAL SPECIES 7 ENSGT00390000002738.b ENSGT00940000164633 ENSGT00940000161269 #11 ENSGT00940000157774 ENSGT00940000154374.b ENSGT00940000163762.a.a ENSGT00390000004199 ENSGT00390000001322 ENSGT00940000156906 #15 ENSGT00390000008608 #16 ENSGT00940000163309 ENSGT00390000002659 #18 ENSGT01020000230412.A.c.b.d #19 ENSGT00390000018059.b #20 ENSGT00940000160907 #21 ENSGT00940000160836.d #22 ENSGT00940000160493 #23 ENSGT00940000159284 ENSGT00950000183190.a.a.a.a ENSGT00950000183190.a.a.b ENSGT00950000183190.a.a.a.b ENSGT00940000155863 ENSGT00390000006096.a.a ENSGT00940000161011 ENSGT00940000155030 ENSGT00940000156349 ENSGT00950000183209.b.b ENSGT01030000234573.B.d ENSGT01030000234573.B.c.a ENSGT00940000158683.b ENSGT00940000162342 Lepidosauria ANCESTRAL SPECIES ENSGT00940000160836.d #22 tuatara DUPLICATION tuatara MODERN SPECIES 1454 ENSSPUG00000000953 #22 tuatara MODERN SPECIES 746 ETS2 (ENSSPUG00000000684) ERG (ENSSPUG00000000653) KCNJ15 (ENSSPUG00000000634) KCNJ6 (ENSSPUG00000000631) DYRK1A (ENSSPUG00000000621) VPS26C (ENSSPUG00000000615) ENSSPUG00000000603 PIGP (ENSSPUG00000000596) ENSSPUG00000000519 ENSSPUG00000000498 SIM2 (ENSSPUG00000000454) ENSSPUG00000000433 #22 PRKAB2 (ENSSPUG00000000426) ENSSPUG00000000416 ENSSPUG00000000396 PHGDH (ENSSPUG00000000175) HMGCS2 (ENSSPUG00000000080) NOTCH2 (ENSSPUG00000000062) SEC22B (ENSSPUG00000000051) PTRH1 (ENSSPUG00000000040) CFAP157 (ENSSPUG00000015602) URM1 (ENSSPUG00000015548) SLC27A4 (ENSSPUG00000015536) COQ4 (ENSSPUG00000015526) TRUB2 (ENSSPUG00000015515) SWI5 (ENSSPUG00000015500) ENSSPUG00000015440 Episquamata ANCESTRAL SPECIES ENSGT00940000160836.d #22 Toxicofera ANCESTRAL SPECIES ENSGT00940000160836.d #22 Elapidae ANCESTRAL SPECIES 174 ENSGT00940000160836.d #22 ENSGT00940000160493 #23 Elapidae_a ANCESTRAL SPECIES ENSGT00940000160836.d #22 Acanthophiinae ANCESTRAL SPECIES ENSGT00940000160836.d #22 Eastern brown snake DUPLICATION Eastern brown snake MODERN SPECIES 21 ENSPTXG00000001011 FASLG (ENSPTXG00000001008) ENSPTXG00000001004 SUCO (ENSPTXG00000000794) PIGC (ENSPTXG00000000758) ENSPTXG00000000755 ENSPTXG00000000750 TMEM121 (ENSPTXG00000000748) ENSPTXG00000000746 ENSPTXG00000000744 MGST3 (ENSPTXG00000000741) #16 ENSPTXG00000000739 #15 ENSPTXG00000000718 #15 ADCY10 (ENSPTXG00000000702) ENSPTXG00000000591 #22 ENSPTXG00000000564 #22 ENSPTXG00000000548 NUF2 (ENSPTXG00000000535) ENSPTXG00000000521 ENSPTXG00000000509 ENSPTXG00000000502 LMX1A (ENSPTXG00000000145) RXRG (ENSPTXG00000000087) #11 SELE (ENSPTXG00000004374) #7 ENSPTXG00000004372 METTL18 (ENSPTXG00000004371) C1orf112 (ENSPTXG00000004370) SCYL3 (ENSPTXG00000004368) KIFAP3 (ENSPTXG00000004367) GORAB (ENSPTXG00000004366) PRRX1 (ENSPTXG00000004365) Eastern brown snake MODERN SPECIES 21 GORAB (ENSPTXG00000004366) KIFAP3 (ENSPTXG00000004367) SCYL3 (ENSPTXG00000004368) C1orf112 (ENSPTXG00000004370) METTL18 (ENSPTXG00000004371) ENSPTXG00000004372 SELE (ENSPTXG00000004374) #7 RXRG (ENSPTXG00000000087) #11 LMX1A (ENSPTXG00000000145) ENSPTXG00000000502 ENSPTXG00000000509 ENSPTXG00000000521 NUF2 (ENSPTXG00000000535) ENSPTXG00000000548 ENSPTXG00000000564 #22 ENSPTXG00000000591 #22 ADCY10 (ENSPTXG00000000702) ENSPTXG00000000718 #15 ENSPTXG00000000739 #15 MGST3 (ENSPTXG00000000741) #16 ENSPTXG00000000744 ENSPTXG00000000746 TMEM121 (ENSPTXG00000000748) ENSPTXG00000000750 ENSPTXG00000000755 PIGC (ENSPTXG00000000758) SUCO (ENSPTXG00000000794) ENSPTXG00000001004 FASLG (ENSPTXG00000001008) ENSPTXG00000001011 ENSPTXG00000001013 Mainland tiger snake MODERN SPECIES 1364 ENSNSUG00000011568 #22 Blue-lipped sea krait MODERN SPECIES 3842 ENSLLTG00000009680 #22 Indian cobra MODERN SPECIES 2 PRKAB2 (ENSNNAG00000004404) ENSNNAG00000004334 PHGDH (ENSNNAG00000004258) HMGCS2 (ENSNNAG00000004218) ENSNNAG00000004195 ENSNNAG00000004186 SUCO (ENSNNAG00000004047) PIGC (ENSNNAG00000004008) ENSNNAG00000003950 TMEM121 (ENSNNAG00000003941) ENSNNAG00000003900 MGST3 (ENSNNAG00000003866) #16 ENSNNAG00000003828 #15 ENSNNAG00000003779 #15 ENSNNAG00000003511 ENSNNAG00000003382 #22 FMO5 (ENSNNAG00000003353) #23 NUF2 (ENSNNAG00000003321) ENSNNAG00000003303 ENSNNAG00000003278 LMX1A (ENSNNAG00000003198) RXRG (ENSNNAG00000003164) #11 SELE (ENSNNAG00000003136) #7 ENSNNAG00000003129 ENSNNAG00000003123 METTL18 (ENSNNAG00000003120) SCYL3 (ENSNNAG00000003103) C1orf112 (ENSNNAG00000003016) KIFAP3 (ENSNNAG00000002965) GORAB (ENSNNAG00000002944) PRRX1 (ENSNNAG00000002935) Archelosauria ANCESTRAL SPECIES 9 ENSGT00960000190308 ENSGT00940000158561 ENSGT00940000155005 ENSGT00390000015399 ENSGT00510000047399 ENSGT00940000158056 ENSGT00390000005496 ENSGT00390000013502.b ENSGT01060000248544.a.a.b.a.b ENSGT00950000185631 ENSGT00950000185229 ENSGT00390000011644 ENSGT00550000074794 ENSGT00390000018059.b #20 ENSGT00940000160907 #21 ENSGT00940000160836.d #22 ENSGT00940000160493 #23 ENSGT00940000159284 ENSGT00950000183190.a.a.a.a ENSGT00950000183190.a.a.b ENSGT00940000155863 ENSGT00390000006096.a.a ENSGT00940000161011 ENSGT00940000155030 ENSGT00940000156349 ENSGT00950000183209.b.b ENSGT01030000234573.B.d ENSGT01030000234573.B.c.a ENSGT00940000158683.b ENSGT00940000162342 ENSGT00390000011474 Cryptodira DUPLICATION Cryptodira ANCESTRAL SPECIES ENSGT00940000160836.d.m #22 Testudinoidea ANCESTRAL SPECIES ENSGT00940000160836.d.m #22 Testudinidae ANCESTRAL SPECIES ENSGT00940000160836.d.m #22 Abingdon island giant tortoise MODERN SPECIES 1089 TADA1 (ENSCABG00000016954) ENSCABG00000016956 FAM78B (ENSCABG00000016959) #20 PLPP6 (ENSCABG00000016962) #21 ENSCABG00000016976 #22 ENSCABG00000017031 #22 Cryptodira DUPLICATION Cryptodira ANCESTRAL SPECIES ENSGT00940000160836.d.n.a #22 Testudinoidea ANCESTRAL SPECIES ENSGT00940000160836.d.n.a #22 Emydidae ANCESTRAL SPECIES ENSGT00940000160836.d.n.a #22 painted turtle DUPLICATION painted turtle MODERN SPECIES 2399 TADA1 (ENSCPBG00000003554) ENSCPBG00000003569 ENSCPBG00000003579 FAM78B (ENSCPBG00000003588) #20 PLPP6 (ENSCPBG00000003610) #21 ENSCPBG00000003645 #22 ENSCPBG00000003668 #22 ENSCPBG00000003724 #22 PRKAB2 (ENSCPBG00000003950) PDE4DIP (ENSCPBG00000003991) PHGDH (ENSCPBG00000004080) HMGCS2 (ENSCPBG00000004143) NOTCH2 (ENSCPBG00000005048) SEC22B (ENSCPBG00000005072) painted turtle MODERN SPECIES 2399 TADA1 (ENSCPBG00000003554) ENSCPBG00000003569 ENSCPBG00000003579 FAM78B (ENSCPBG00000003588) #20 PLPP6 (ENSCPBG00000003610) #21 ENSCPBG00000003645 #22 ENSCPBG00000003668 #22 ENSCPBG00000003724 #22 PRKAB2 (ENSCPBG00000003950) PDE4DIP (ENSCPBG00000003991) PHGDH (ENSCPBG00000004080) HMGCS2 (ENSCPBG00000004143) NOTCH2 (ENSCPBG00000005048) SEC22B (ENSCPBG00000005072) Three-toed box turtle MODERN SPECIES 1295 ENSTMTG00000006862 #22 Chinese turtle MODERN SPECIES 1507 FMO2 (ENSPSIG00000006005) FMO1 (ENSPSIG00000007618) FMO4 (ENSPSIG00000010321) PRRC2C (ENSPSIG00000010522) VAMP4 (ENSPSIG00000006736) METTL13 (ENSPSIG00000007651) DNM3 (ENSPSIG00000008010) PIGC (ENSPSIG00000009903) SUCO (ENSPSIG00000010063) FASLG (ENSPSIG00000010517) TADA1 (ENSPSIG00000011548) PRDX6 (ENSPSIG00000011956) FAM78B (ENSPSIG00000012577) #20 ENSPSIG00000012783 #22 PRKAB2 (ENSPSIG00000012956) ENSPSIG00000001874 Cryptodira ANCESTRAL SPECIES 8 ENSGT00950000183161.b ENSGT00960000190308 ENSGT00940000158561 ENSGT00940000155005 ENSGT00510000047399 ENSGT00940000158056 ENSGT00390000005496 ENSGT00390000013502.b ENSGT01060000248544.a.a.b.a.b ENSGT00950000185631 ENSGT00950000185229 ENSGT00390000011644 ENSGT00550000074794 ENSGT00390000018059.b #20 ENSGT00940000160907 #21 ENSGT00940000160836.d.n.b #22 ENSGT00940000160493 #23 ENSGT00940000159284 ENSGT00950000183190.a.a.a.a ENSGT00950000183190.a.a.b ENSGT00940000155863 ENSGT00390000006096.a.a ENSGT00940000155030 ENSGT00940000156349 ENSGT00950000183209.b.b ENSGT01030000234573.B.d ENSGT01030000234573.B.c.a ENSGT00940000158683.b ENSGT00940000162342 ENSGT00390000011474 ENSGT00390000003866.a.b Testudinoidea ANCESTRAL SPECIES 5 ENSGT00960000190308.a ENSGT00960000190308.b ENSGT00940000158561 ENSGT00940000155005 ENSGT00510000047399 ENSGT00940000158056.z ENSGT00390000005496 ENSGT00390000013502.b ENSGT01060000248544.a.a.b.a.b ENSGT00950000185631 ENSGT00950000185229 ENSGT00390000011644 ENSGT00940000164279 ENSGT00390000018059.b #20 ENSGT00940000160907 #21 ENSGT00940000160836.d.n.b #22 ENSGT00940000160493 #23 ENSGT00940000159284 ENSGT00950000183190.a.a.b.mc.b ENSGT00950000183190.a.a.a.a ENSGT00950000183190.a.a.b.nc ENSGT00950000183190.a.a.b.mc.a ENSGT00940000155863 ENSGT00390000006096.a.a ENSGT00940000155030 ENSGT00940000156349 ENSGT00950000183209.b.b ENSGT01030000234573.B.d ENSGT01030000234573.B.c.a ENSGT00940000158683.b ENSGT00940000162342 Emydidae ANCESTRAL SPECIES 24 ENSGT00960000190308.a ENSGT00940000158561.e ENSGT00940000155005 ENSGT00510000047399 ENSGT00940000158056.z ENSGT00390000005496 ENSGT00390000013502.b ENSGT01060000248544.a.a.b.a.b ENSGT00950000185631 ENSGT00950000185229 ENSGT00390000011644 ENSGT00940000164279 ENSGT01030000236207.a.a ENSGT00390000018059.b #20 ENSGT00940000160907 #21 ENSGT00940000160836.d.n.b #22 ENSGT00940000159284 ENSGT00950000183190.a.a.b.mc.b ENSGT00950000183190.a.a.a.a ENSGT00950000183190.a.a.b.nc ENSGT00950000183190.a.a.b.mc.a ENSGT00940000155863 ENSGT00390000006096.a.a ENSGT00940000155030 ENSGT00940000156349 ENSGT00950000183209.b.b ENSGT01030000234573.B.d ENSGT01030000234573.B.c.a ENSGT00390000003866.a.b ENSGT00990000205100.A.a ENSGT00940000158683.b Three-toed box turtle DUPLICATION Three-toed box turtle MODERN SPECIES 99 ENSTMTG00000007594 ENSTMTG00000007559 ENSTMTG00000007539 ENSTMTG00000007529 ENSTMTG00000007507 ENSTMTG00000007198 ENSTMTG00000007167 ENSTMTG00000007113 ENSTMTG00000007099 ENSTMTG00000007079 ENSTMTG00000007061 ENSTMTG00000007029 ENSTMTG00000007012 ENSTMTG00000007003 ENSTMTG00000006986 #21 ENSTMTG00000006966 #22 ENSTMTG00000006948 ENSTMTG00000006935 ENSTMTG00000006853 ENSTMTG00000006821 ENSTMTG00000006788 ENSTMTG00000006780 ENSTMTG00000005012 ENSTMTG00000004791 ENSTMTG00000004645 ENSTMTG00000003429 ENSTMTG00000003278 ENSTMTG00000003218 ENSTMTG00000003204 ENSTMTG00000003196 ENSTMTG00000003168 Three-toed box turtle MODERN SPECIES 97 ENSTMTG00000020381 ENSTMTG00000020320 ENSTMTG00000020314 ENSTMTG00000020309 ENSTMTG00000020302 ENSTMTG00000020144 ENSTMTG00000020132 ENSTMTG00000020122 ENSTMTG00000020118 ENSTMTG00000020115 ENSTMTG00000020105 ENSTMTG00000020101 ENSTMTG00000020094 ENSTMTG00000020090 ENSTMTG00000020079 #21 ENSTMTG00000020072 #22 ENSTMTG00000020060 ENSTMTG00000019969 ENSTMTG00000019960 ENSTMTG00000019952 ENSTMTG00000019942 ENSTMTG00000014264 ENSTMTG00000013777 ENSTMTG00000013707 ENSTMTG00000008560 ENSTMTG00000008227 ENSTMTG00000008196 ENSTMTG00000008183 ENSTMTG00000008174 ENSTMTG00000008159 ENSTMTG00000008146 painted turtle MODERN SPECIES 2399 TADA1 (ENSCPBG00000003554) ENSCPBG00000003569 ENSCPBG00000003579 FAM78B (ENSCPBG00000003588) #20 PLPP6 (ENSCPBG00000003610) #21 ENSCPBG00000003645 #22 ENSCPBG00000003668 #22 ENSCPBG00000003724 #22 PRKAB2 (ENSCPBG00000003950) PDE4DIP (ENSCPBG00000003991) PHGDH (ENSCPBG00000004080) HMGCS2 (ENSCPBG00000004143) NOTCH2 (ENSCPBG00000005048) SEC22B (ENSCPBG00000005072) Testudinidae ANCESTRAL SPECIES 23 ENSGT00960000190308.a ENSGT00940000158561 ENSGT00940000155005 ENSGT00510000047399 ENSGT00940000158056.y ENSGT00940000158056.z ENSGT00390000005496 ENSGT00390000013502.b ENSGT01060000248544.a.a.b.a.b ENSGT00950000185631 ENSGT00950000185229 ENSGT00390000011644 ENSGT00940000164279 ENSGT00390000018059.b #20 ENSGT00940000160907 #21 ENSGT00940000160836.d.n.b #22 ENSGT00940000160493 #23 ENSGT00940000159284 ENSGT00950000183190.a.a.b.mc.b ENSGT00950000183190.a.a.b.nc ENSGT00950000183190.a.a.b.mc.a ENSGT00940000155863 ENSGT00390000006096.a.a ENSGT00940000155030 ENSGT00940000156349 ENSGT00950000183209.b.b ENSGT01030000234573.B.c.a ENSGT00940000158683.b Abingdon island giant tortoise MODERN SPECIES 1089 TADA1 (ENSCABG00000016954) ENSCABG00000016956 FAM78B (ENSCABG00000016959) #20 PLPP6 (ENSCABG00000016962) #21 ENSCABG00000016976 #22 ENSCABG00000017031 #22 Goode s thornscrub tortoise MODERN SPECIES 22 ENSGEVG00005008527 PRRC2C (ENSGEVG00005008302) ENSGEVG00005008240 MYOC (ENSGEVG00005008207) VAMP4 (ENSGEVG00005008184) METTL13 (ENSGEVG00005008159) DNM3 (ENSGEVG00005007973) SUCO (ENSGEVG00005007819) FASLG (ENSGEVG00005007773) ENSGEVG00005007755 ENSGEVG00005007733 TADA1 (ENSGEVG00005007719) ENSGEVG00005007702 FAM78B (ENSGEVG00005007688) #20 PLPP6 (ENSGEVG00005007664) #21 ENSGEVG00005007391 #22 ENSGEVG00005007072 #23 PRKAB2 (ENSGEVG00005006996) ENSGEVG00005006969 ENSGEVG00005006881 ENSGEVG00005006836 PHGDH (ENSGEVG00005006807) HMGCS2 (ENSGEVG00005006695) NOTCH2 (ENSGEVG00005005781) SEC22B (ENSGEVG00005005497) PACS2 (ENSGEVG00005005436) MTA1 (ENSGEVG00005005055) CRIP2 (ENSGEVG00005004907) CRIP1 (ENSGEVG00005004878) ENSGEVG00005004856 ENSGEVG00005004835 Archosauria ANCESTRAL SPECIES 27 ENSGT00950000183161.b ENSGT00960000190308 ENSGT00940000158561 ENSGT00940000155005 ENSGT00390000015399 ENSGT00510000047399 ENSGT00940000158056 ENSGT00390000005496 ENSGT00390000013502.b ENSGT01060000248544.a.a.b.a.b ENSGT00950000185631 ENSGT00390000011644 ENSGT00550000074794 ENSGT00390000018059.b #20 ENSGT00940000160907 #21 ENSGT00940000160836.d #22 ENSGT00940000160493 #23 ENSGT00940000159284 ENSGT00950000183190.a.a.a.a ENSGT00950000183190.a.a.b ENSGT00940000155863 ENSGT00390000006096.a.a ENSGT00940000161011 ENSGT00940000155030 ENSGT00940000156349 ENSGT00950000183209.b.b ENSGT01030000234573.B.d ENSGT01030000234573.B.c.a ENSGT00940000158683.b ENSGT00940000162342 ENSGT00390000011474 Aves ANCESTRAL SPECIES 7 ENSGT00950000183161.b ENSGT00940000158561 ENSGT00390000015399 ENSGT00510000047399 ENSGT00940000158056 ENSGT00390000005496 ENSGT00390000013502.b ENSGT01060000248544.a.a.b.a.b ENSGT00950000185631 ENSGT00940000172066 ENSGT00390000011644 ENSGT00550000074794 ENSGT00390000018059.b #20 ENSGT00940000160907 #21 ENSGT00940000160493.a #23 ENSGT00940000160836.d #22 ENSGT00940000160493.b #23 ENSGT00940000159284 ENSGT00950000183190.a.a.a.a ENSGT00950000183190.a.a.b ENSGT01100000263594 ENSGT00940000155863 ENSGT00390000006096.a.a ENSGT00940000161011 ENSGT00940000155030 ENSGT00940000156349 ENSGT00950000183209.b.b ENSGT01030000234573.B.d ENSGT01030000234573.B.c.a ENSGT00940000158683.b ENSGT00940000162342 Neognathae ANCESTRAL SPECIES 8 ENSGT00940000155005 ENSGT00390000015399 ENSGT00510000047399 ENSGT00940000158056 ENSGT00390000005496 ENSGT00390000013502.b ENSGT01060000248544.a.a.b.a.b ENSGT00950000185631 ENSGT00940000172066 ENSGT00390000011644 ENSGT00550000074794 ENSGT00390000018059.b #20 ENSGT00940000160907 #21 ENSGT00940000160493.b #23 ENSGT00940000160493.a #23 ENSGT00940000160836.d #22 ENSGT00940000159284 ENSGT00950000183190.a.a.a.a ENSGT00950000183190.a.a.b ENSGT01100000263594 ENSGT00940000155863 ENSGT00390000006096.a.a ENSGT00940000161011 ENSGT00940000155030 ENSGT00940000156349 ENSGT00950000183209.b.b ENSGT01030000234573.B.d ENSGT01030000234573.B.c.a ENSGT00940000158683.b ENSGT00940000162342 ENSGT00390000011474 Neognathae_b ANCESTRAL SPECIES ENSGT00940000160836.d #22 Neognathae_c ANCESTRAL SPECIES ENSGT00940000160836.d #22 Kakapo DUPLICATION Kakapo DUPLICATION Kakapo MODERN SPECIES 25 PRRC2C (ENSSHBG00005009830) MYOC (ENSSHBG00005009968) VAMP4 (ENSSHBG00005009981) ITPA (ENSSHBG00005010008) METTL13 (ENSSHBG00005010035) DNM3 (ENSSHBG00005010078) PIGC (ENSSHBG00005010158) SUCO (ENSSHBG00005000859) FASLG (ENSSHBG00005000862) ENSSHBG00005000873 TADA1 (ENSSHBG00005000887) PRDX6 (ENSSHBG00005000895) FAM78B (ENSSHBG00005000901) #20 PLPP6 (ENSSHBG00005000906) #21 ENSSHBG00005005246 #23 ENSSHBG00005005259 #22 ENSSHBG00005005270 #23 ENSSHBG00005005286 #22 ENSSHBG00005005304 #23 ENSSHBG00005005329 #23 ENSSHBG00005005361 #23 ENSSHBG00005005380 #22 PRKAB2 (ENSSHBG00005005402) ENSSHBG00005005423 ENSSHBG00005005436 ENSSHBG00005005457 ENSSHBG00005005481 PHGDH (ENSSHBG00005005502) HMGCS2 (ENSSHBG00005005589) ENSSHBG00005005608 NOTCH2 (ENSSHBG00005006669) Kakapo MODERN SPECIES 25 VAMP4 (ENSSHBG00005009981) ITPA (ENSSHBG00005010008) METTL13 (ENSSHBG00005010035) DNM3 (ENSSHBG00005010078) PIGC (ENSSHBG00005010158) SUCO (ENSSHBG00005000859) FASLG (ENSSHBG00005000862) ENSSHBG00005000873 TADA1 (ENSSHBG00005000887) PRDX6 (ENSSHBG00005000895) FAM78B (ENSSHBG00005000901) #20 PLPP6 (ENSSHBG00005000906) #21 ENSSHBG00005005246 #23 ENSSHBG00005005259 #22 ENSSHBG00005005270 #23 ENSSHBG00005005286 #22 ENSSHBG00005005304 #23 ENSSHBG00005005329 #23 ENSSHBG00005005361 #23 ENSSHBG00005005380 #22 PRKAB2 (ENSSHBG00005005402) ENSSHBG00005005423 ENSSHBG00005005436 ENSSHBG00005005457 ENSSHBG00005005481 PHGDH (ENSSHBG00005005502) HMGCS2 (ENSSHBG00005005589) ENSSHBG00005005608 NOTCH2 (ENSSHBG00005006669) SEC22B (ENSSHBG00005018280) PACS2 (ENSSHBG00005018285) Kakapo MODERN SPECIES 25 PIGC (ENSSHBG00005010158) SUCO (ENSSHBG00005000859) FASLG (ENSSHBG00005000862) ENSSHBG00005000873 TADA1 (ENSSHBG00005000887) PRDX6 (ENSSHBG00005000895) FAM78B (ENSSHBG00005000901) #20 PLPP6 (ENSSHBG00005000906) #21 ENSSHBG00005005246 #23 ENSSHBG00005005259 #22 ENSSHBG00005005270 #23 ENSSHBG00005005286 #22 ENSSHBG00005005304 #23 ENSSHBG00005005329 #23 ENSSHBG00005005361 #23 ENSSHBG00005005380 #22 PRKAB2 (ENSSHBG00005005402) ENSSHBG00005005423 ENSSHBG00005005436 ENSSHBG00005005457 ENSSHBG00005005481 PHGDH (ENSSHBG00005005502) HMGCS2 (ENSSHBG00005005589) ENSSHBG00005005608 NOTCH2 (ENSSHBG00005006669) SEC22B (ENSSHBG00005018280) PACS2 (ENSSHBG00005018285) MTA1 (ENSSHBG00005018289) CRIP2 (ENSSHBG00005018294) CRIP1 (ENSSHBG00005018297) TEDC1 (ENSSHBG00005018300) Passeriformes ANCESTRAL SPECIES ENSGT00940000160836.d #22 Passeriformes_d ANCESTRAL SPECIES ENSGT00940000160836.d #22 Flycatcher MODERN SPECIES 27 FMO4 (ENSFALG00000007840) PRRC2C (ENSFALG00000007832) MYOC (ENSFALG00000007826) ENSFALG00000007818 METTL13 (ENSFALG00000007811) DNM3 (ENSFALG00000007806) PIGC (ENSFALG00000014545) SUCO (ENSFALG00000007801) FASLG (ENSFALG00000026011) ENSFALG00000027355 ENSFALG00000014546 ENSFALG00000003815 PRDX6 (ENSFALG00000003804) ENSFALG00000003798 #20 ENSFALG00000028558 #23 ENSFALG00000015215 #22 ENSFALG00000003783 ENSFALG00000003755 PHGDH (ENSFALG00000003733) HMGCS2 (ENSFALG00000026416) ENSFALG00000003721 ENSFALG00000003644 ENSFALG00000025163 SEC22B (ENSFALG00000003606) PACS2 (ENSFALG00000003599) ENSFALG00000023096 MTA1 (ENSFALG00000003592) CRIP2 (ENSFALG00000028733) ENSFALG00000023674 ENSFALG00000026183 CRIP1 (ENSFALG00000026248) Australian saltwater crocodile DUPLICATION Australian saltwater crocodile MODERN SPECIES 28 PRRC2C (ENSCPRG00005004131) ENSCPRG00005004035 MYOC (ENSCPRG00005004028) VAMP4 (ENSCPRG00005004024) ITPA (ENSCPRG00005004021) METTL13 (ENSCPRG00005004016) DNM3 (ENSCPRG00005003994) PIGC (ENSCPRG00005003982) SUCO (ENSCPRG00005003969) FASLG (ENSCPRG00005003963) ENSCPRG00005003957 TADA1 (ENSCPRG00005003943) PRDX6 (ENSCPRG00005003937) FAM78B (ENSCPRG00005003933) #20 PLPP6 (ENSCPRG00005003927) #21 ENSCPRG00005003917 #22 ENSCPRG00005003653 #22 PRKAB2 (ENSCPRG00005003576) PDE4DIP (ENSCPRG00005003176) PHGDH (ENSCPRG00005003122) HMGCS2 (ENSCPRG00005003094) ENSCPRG00005003091 ENSCPRG00005003087 NOTCH2 (ENSCPRG00005001488) SEC22B (ENSCPRG00005001287) PACS2 (ENSCPRG00005001267) MTA1 (ENSCPRG00005001248) CRIP2 (ENSCPRG00005001228) CRIP1 (ENSCPRG00005001226) TEDC1 (ENSCPRG00005001201) TMEM121 (ENSCPRG00005001148) Australian saltwater crocodile MODERN SPECIES 28 ENSCPRG00005004035 MYOC (ENSCPRG00005004028) VAMP4 (ENSCPRG00005004024) ITPA (ENSCPRG00005004021) METTL13 (ENSCPRG00005004016) DNM3 (ENSCPRG00005003994) PIGC (ENSCPRG00005003982) SUCO (ENSCPRG00005003969) FASLG (ENSCPRG00005003963) ENSCPRG00005003957 TADA1 (ENSCPRG00005003943) PRDX6 (ENSCPRG00005003937) FAM78B (ENSCPRG00005003933) #20 PLPP6 (ENSCPRG00005003927) #21 ENSCPRG00005003917 #22 ENSCPRG00005003653 #22 PRKAB2 (ENSCPRG00005003576) PDE4DIP (ENSCPRG00005003176) PHGDH (ENSCPRG00005003122) HMGCS2 (ENSCPRG00005003094) ENSCPRG00005003091 ENSCPRG00005003087 NOTCH2 (ENSCPRG00005001488) SEC22B (ENSCPRG00005001287) PACS2 (ENSCPRG00005001267) MTA1 (ENSCPRG00005001248) CRIP2 (ENSCPRG00005001228) CRIP1 (ENSCPRG00005001226) TEDC1 (ENSCPRG00005001201) TMEM121 (ENSCPRG00005001148) SPATA46 (ENSCPRG00005001118) Coelacanth MODERN SPECIES 678 PLPP6 (ENSLACG00000002992) #21 si:dkey-239i20.2 (ENSLACG00000004946) #22 PRRC2C (ENSLACG00000007903) MYOC (ENSLACG00000009725) VAMP4 (ENSLACG00000010929) ITPA (ENSLACG00000011694) METTL13 (ENSLACG00000011875) DNM3 (ENSLACG00000012553) ENSLACG00000013568 TMED5 (ENSLACG00000014435) SUCO (ENSLACG00000014529) FASLG (ENSLACG00000015347)