Hystricomorpha	ANCESTRAL SPECIES	13	ENSGT00940000154892 #7	ENSGT00390000004383 #8	ENSGT00390000000022.b #9	ENSGT00390000002918.a.b #10	ENSGT00730000111100 #11	ENSGT00940000153239.B #12	ENSGT00550000074840.y.b.b #13	ENSGT00390000002077 #14	ENSGT00390000020164 #15	ENSGT00940000157339 #16	ENSGT00940000163233 #17	ENSGT00940000154485.A #18	ENSGT00390000017504 #19	ENSGT00420000030724 #20	ENSGT00940000158004 #21	ENSGT00530000063718.a.b #22	ENSGT00390000008751.a #23	ENSGT00940000162686 #24	ENSGT00390000017489	ENSGT00390000018898 #25	ENSGT00500000045764 #26	ENSGT00940000153331.r #27	ENSGT00940000153331.q.a.b #28	ENSGT00940000153331.q.a.a.b #29	ENSGT00940000153331.q.a.a.a #30	ENSGT00940000153331.q.b #31	ENSGT00940000157896 #32	ENSGT00390000000787 #33	ENSGT00390000018482 #35	ENSGT00390000018868.A #36	ENSGT00940000153962.b #37
Naked mole-rat female	MODERN SPECIES	24	Aco2 (ENSHGLG00000015463) #7	POLR3H (ENSHGLG00000014795) #8	CSDC2 (ENSHGLG00000016778) #9	PMM1 (ENSHGLG00000016980) #10	DESI1 (ENSHGLG00000039030) #11	ENSHGLG00000018078 #12	SNU13 (ENSHGLG00000018808) #13	MEI1 (ENSHGLG00000017177) #14	CCDC134 (ENSHGLG00000015870) #15	SREBF2 (ENSHGLG00000010258) #16	SHISA8 (ENSHGLG00000006306) #17	TNFRSF13C (ENSHGLG00000005221) #18	CENPM (ENSHGLG00000005039) #19	SMIM45 (ENSHGLG00000020741) #20	ENSHGLG00000006998 #21	WBP2NL (ENSHGLG00000004979) #22	NAGA (ENSHGLG00000048767) #23	PHETA2 (ENSHGLG00000007647) #24	NDUFA6 (ENSHGLG00000040424) #25	ENSHGLG00000047435 #26	ENSHGLG00000004933 #27	ENSHGLG00000017416 #28	ENSHGLG00000018202 #29	ENSHGLG00000019048 #30	ENSHGLG00000010614 #31	TCF20 (ENSHGLG00000009579) #32	NFAM1 (ENSHGLG00000041183) #33	ENSHGLG00000039538 #34	ENSHGLG00000015706 #35	POLDIP3 (ENSHGLG00000013156) #36	CYB5R3 (ENSHGLG00000016147) #37
Hystricomorpha_a	ANCESTRAL SPECIES	6	ENSGT00390000004383 #8	ENSGT00390000000022.b #9	ENSGT00390000002918.a.b #10	ENSGT00730000111100 #11	ENSGT00940000153239.B #12	ENSGT00550000074840.y.b.a.a ##13	ENSGT00550000074840.y.b.b #13	ENSGT00390000002077 #14	ENSGT00390000020164 #15	ENSGT00940000157339 #16	ENSGT00940000163233 #17	ENSGT00940000154485.A #18	ENSGT00390000017504 #19	ENSGT00420000030724 #20	ENSGT00940000158004 #21	ENSGT00530000063718.a.b #22	ENSGT00390000008751.a #23	ENSGT00940000162686 #24	ENSGT00390000017489	ENSGT00390000018898 #25	ENSGT00500000045764 #26	ENSGT00940000153331.r #27	ENSGT00940000153331.q.a.b #28	ENSGT00940000153331.q.a.a.b #29	ENSGT00940000153331.q.a.a.a #30	ENSGT00940000153331.q.b #31	ENSGT00940000157896 #32	ENSGT00390000000787 #33	ENSGT00390000018482 #35	ENSGT00390000018868.A #36	ENSGT00940000153962.b #37
Hystricomorpha_b	ANCESTRAL SPECIES	2	ENSGT00940000154892 #7	ENSGT00390000004383 #8	ENSGT00390000000022.b #9	ENSGT00390000002918.a.b #10	ENSGT00730000111100 #11	ENSGT00940000153239.B #12	ENSGT00550000074840.y.b.a.a ##13	ENSGT00390000002077 #14	ENSGT00390000020164 #15	ENSGT00940000157339 #16	ENSGT00940000163233 #17	ENSGT00940000154485.A #18	ENSGT00390000017504 #19	ENSGT00420000030724 #20	ENSGT00940000158004 #21	ENSGT00530000063718.a.b #22	ENSGT00390000008751.a #23	ENSGT00940000162686 #24	ENSGT00390000017489	ENSGT00390000018898 #25	ENSGT00500000045764 #26	ENSGT00940000153331.r #27	ENSGT00940000153331.q.a.a.b #29	ENSGT00940000153331.q.a.b #28	ENSGT00940000153331.q.b #31	ENSGT00940000157896 #32	ENSGT00390000000787 #33	ENSGT00390000018482 #35	ENSGT00390000018868.A #36	ENSGT00940000153962.b #37	ENSGT00510000047981.c
Long-tailed chinchilla	MODERN SPECIES	120	POLR3H (ENSCLAG00000016948) #8	CSDC2 (ENSCLAG00000016705) #9	PMM1 (ENSCLAG00000016748) #10	DESI1 (ENSCLAG00000016871) #11	XRCC6 (ENSCLAG00000016669) #12	SNU13 (ENSCLAG00000017182) ##13	ENSCLAG00000016769	ENSCLAG00000017166 #14	CCDC134 (ENSCLAG00000017160) #15	SREBF2 (ENSCLAG00000017059) #16	ENSCLAG00000016102 #17	TNFRSF13C (ENSCLAG00000017293) #18	CENPM (ENSCLAG00000017021) #19	SMIM45 (ENSCLAG00000018061) #20	ENSCLAG00000017190 #21	WBP2NL (ENSCLAG00000017175) #22	NAGA (ENSCLAG00000017177) #23	PHETA2 (ENSCLAG00000017176) #24	SMDT1 (ENSCLAG00000016250)	NDUFA6 (ENSCLAG00000016285) #25	ENSCLAG00000017000 #26	ENSCLAG00000017186 #27	ENSCLAG00000016575 #29	ENSCLAG00000017192 #28	TCF20 (ENSCLAG00000016780) #32	NFAM1 (ENSCLAG00000016829) #33	RRP7A (ENSCLAG00000016715) #35	POLDIP3 (ENSCLAG00000016864) #36	CYB5R3 (ENSCLAG00000015151) #37	A4GALT (ENSCLAG00000018104)	ARFGAP3 (ENSCLAG00000016273)
Degu	MODERN SPECIES	197	ENSODEG00000013641 #8	CSDC2 (ENSODEG00000015733) #9	PMM1 (ENSODEG00000012155) #10	DESI1 (ENSODEG00000012652) #11	XRCC6 (ENSODEG00000015847) #12	SNU13 (ENSODEG00000015632) ##13	ENSODEG00000012993 #14	CCDC134 (ENSODEG00000013183) #15	ENSODEG00000013510 #16	ENSODEG00000013575 #16	SHISA8 (ENSODEG00000013588) #17	TNFRSF13C (ENSODEG00000012515) #18	CENPM (ENSODEG00000012293) #19	SMIM45 (ENSODEG00000020050) #20	ENSODEG00000012406 #21	WBP2NL (ENSODEG00000013016) #22	NAGA (ENSODEG00000013910) #23	ENSODEG00000020147	PHETA2 (ENSODEG00000020107) #24	SMDT1 (ENSODEG00000012796)	ENSODEG00000015286 #25	ENSODEG00000013060 #27	ENSODEG00000013045 #29	ENSODEG00000013572 #29
Guinea pig	MODERN SPECIES	28	ACO2 (ENSCPOG00000012642) #7	POLR3H (ENSCPOG00000012650) #8	CSDC2 (ENSCPOG00000037976) #9	PMM1 (ENSCPOG00000014618) #10	DESI1 (ENSCPOG00000038083) #11	XRCC6 (ENSCPOG00000003542) #12	SNU13 (ENSCPOG00000040165) #13	ENSCPOG00000010113 #14	CCDC134 (ENSCPOG00000000617) #15	SREBF2 (ENSCPOG00000013199) #16	SHISA8 (ENSCPOG00000040084) #17	TNFRSF13C (ENSCPOG00000022735) #18	CENPM (ENSCPOG00000013206) #19	SMIM45 (ENSCPOG00000036254) #20	ENSCPOG00000013212 #21	WBP2NL (ENSCPOG00000013214) #22	NAGA (ENSCPOG00000021759) #23	PHETA2 (ENSCPOG00000037974) #24	SMDT1 (ENSCPOG00000038038)	NDUFA6 (ENSCPOG00000014525) #25	ENSCPOG00000033145 #29	ENSCPOG00000038295 #29	ENSCPOG00000021372 #29	ENSCPOG00000024267 #29	ENSCPOG00000039514 #29	ENSCPOG00000033260 #27	ENSCPOG00000035752 #28	ENSCPOG00000035390 #29	ENSCPOG00000036957 #30	ENSCPOG00000034989 #30	ENSCPOG00000031413 #31