Mus_A	ANCESTRAL SPECIES	15	ENSGT00390000006885.a #13	ENSGT00390000012647.d #14	ENSGT00940000154783.f #15	ENSGT00940000160294 #16	ENSGT00390000005685 #17	ENSGT00940000158744 #18	ENSGT00510000047092 #19	ENSGT00940000159803	ENSGT00390000001700.a.b.b	ENSGT00390000000062.x.b.l.b	ENSGT00390000000062.x.b.k.b	ENSGT01100000263574.b.j #20	ENSGT01050000244815.B.a.a #21	ENSGT00410000025802.g.b.q.a ##27	ENSGT00530000063808.a #23	ENSGT00530000063435.a.o #22	ENSGT00950000183004.a.a.a.b #24	ENSGT00950000182808.b.b #25	ENSGT00730000111022 #26	ENSGT00410000025802.g.a #27	ENSGT01050000244850.A.a #28	ENSGT00390000004735.A #29	ENSGT00950000182994.B.a.a.a #30	ENSGT00940000156650 #31	ENSGT00390000018621 #32	ENSGT00950000182846.a.a.a.a.a #33	ENSGT00390000003897.s.b.a.a.b #34	ENSGT00390000002034 #35	ENSGT00940000153588.b #36	ENSGT00940000162426 #37	ENSGT00940000162843
Ryukyu mouse	MODERN SPECIES	19	Prkx (MGP_CAROLIEiJ_G0033203) #7	Tbl1x (MGP_CAROLIEiJ_G0033202) #8	Cldn34d (MGP_CAROLIEiJ_G0033201) #9	Cldn34b4 (MGP_CAROLIEiJ_G0033200) #10	Pls3 (MGP_CAROLIEiJ_G0033199) #11	MGP_CAROLIEiJ_G0033198 #12	Mtcp1 (MGP_CAROLIEiJ_G0033197) #13	Cmc4 (MGP_CAROLIEiJ_G0033196) #14	Fundc2 (MGP_CAROLIEiJ_G0033195) #15	F8 (MGP_CAROLIEiJ_G0033194) #16	Smim9 (MGP_CAROLIEiJ_G0033193) #17	Mpp1 (MGP_CAROLIEiJ_G0033192) #18	Dkc1 (MGP_CAROLIEiJ_G0033191) #19	Or13ae2 (MGP_CAROLIEiJ_G0033190) #20	Or7r1 (MGP_CAROLIEiJ_G0033189) #21	G6pdx (MGP_CAROLIEiJ_G0033188) #22	Ikbkg (MGP_CAROLIEiJ_G0033187) #23	Fam3a (MGP_CAROLIEiJ_G0033186) #24	Slc10a3 (MGP_CAROLIEiJ_G0033185) #25	Ubl4a (MGP_CAROLIEiJ_G0033184) #26	Lage3 (MGP_CAROLIEiJ_G0033183) #27	Plxna3 (MGP_CAROLIEiJ_G0033182) #28	Fam50a (MGP_CAROLIEiJ_G0033181) #29	Gdi1 (MGP_CAROLIEiJ_G0033180) #30	Atp6ap1 (MGP_CAROLIEiJ_G0033179) #31	Tafazzin (MGP_CAROLIEiJ_G0033178) #32	Dnase1l1 (MGP_CAROLIEiJ_G0033177) #33	MGP_CAROLIEiJ_G0033176 #34	Emd (MGP_CAROLIEiJ_G0033175) #35	Flna (MGP_CAROLIEiJ_G0033174) #36	Tktl1 (MGP_CAROLIEiJ_G0033173) #37
Mus_B	ANCESTRAL SPECIES	14	ENSGT00390000018904	ENSGT00390000000360.r.b.a.a ##12	ENSGT00390000006885.a #13	ENSGT00390000012647.d #14	ENSGT00940000154783.f #15	ENSGT00940000160294 #16	ENSGT00390000005685 #17	ENSGT00940000158744 #18	ENSGT00510000047092 #19	ENSGT00940000159803	ENSGT00390000001700.a.b.b.o.a	ENSGT01100000263574.b.j #20	ENSGT01050000244815.B.a.a #21	ENSGT00410000025802.g.b.q.a ##27	ENSGT00530000063808.a #23	ENSGT00530000063435.a.o #22	ENSGT00950000183004.a.a.a.b #24	ENSGT00950000182808.b.b #25	ENSGT00730000111022 #26	ENSGT00410000025802.g.a #27	ENSGT01050000244850.A.a #28	ENSGT00390000004735.A #29	ENSGT00950000182994.B.a.a.a #30	ENSGT00940000156650 #31	ENSGT00390000018621 #32	ENSGT00950000182846.a.a.a.a.a #33	ENSGT00390000003897.s.b.a.b.b ##34	ENSGT00390000002034 #35	ENSGT00940000153588.b #36	ENSGT00940000162426 #37	ENSGT00940000162843
Mouse	MODERN SPECIES	37	Brcc3 (ENSMUSG00000031201) ##12	Mtcp1 (ENSMUSG00000031200) #13	Cmc4 (ENSMUSG00000090110) #14	Fundc2 (ENSMUSG00000031198) #15	F8 (ENSMUSG00000031196) #16	Smim9 (ENSMUSG00000073094) #17	Mpp1 (ENSMUSG00000031402) #18	Dkc1 (ENSMUSG00000031403) #19	Gab3 (ENSMUSG00000032750)	Pwwp4d (ENSMUSG00000079531)	Ctag2l2 (ENSMUSG00000079532) ##27	Pwwp4c (ENSMUSG00000079534)	Or13ae2 (ENSMUSG00000051706) #20	Or7r1 (ENSMUSG00000043715) #21	Ctag2l1 (ENSMUSG00000079536) ##27	G6pdx (ENSMUSG00000031400) #22	Ikbkg (ENSMUSG00000004221) #23	Fam3a (ENSMUSG00000031399) #24	Slc10a3 (ENSMUSG00000032806) #25	Ubl4a (ENSMUSG00000015290) #26	Lage3 (ENSMUSG00000015289) #27	Plxna3 (ENSMUSG00000031398) #28	Fam50a (ENSMUSG00000001962) #29	Gdi1 (ENSMUSG00000015291) #30	Atp6ap1 (ENSMUSG00000019087) #31	Tafazzin (ENSMUSG00000009995) #32	Dnase1l1 (ENSMUSG00000019088) #33	Rpl10 (ENSMUSG00000008682) #34	Emd (ENSMUSG00000001964) #35	Flna (ENSMUSG00000031328) #36	Tktl1 (ENSMUSG00000031397) #37
Mus_C	ANCESTRAL SPECIES	27	ENSGT00950000183097.a.a.a #11	ENSGT00940000158132	ENSGT00390000018904	ENSGT00390000000360.r.b.a.a ##12	ENSGT00390000006885.a #13	ENSGT00390000012647.d #14	ENSGT00940000154783.f #15	ENSGT00940000160294 #16	ENSGT00390000005685 #17	ENSGT00940000158744 #18	ENSGT00510000047092 #19	ENSGT01100000263574.b.j #20	ENSGT01050000244815.B.a.a #21	ENSGT00410000025802.g.b.q.a ##27	ENSGT00530000063808.a #23	ENSGT00530000063435.a.o #22	ENSGT00950000183004.a.a.a.b #24	ENSGT00950000182808.b.b #25	ENSGT00730000111022 #26	ENSGT00410000025802.g.a #27	ENSGT01050000244850.A.a #28	ENSGT00390000004735.A #29	ENSGT00950000182994.B.a.a.a #30	ENSGT00940000156650 #31	ENSGT00390000018621 #32	ENSGT00950000182846.a.a.a.a.a #33	ENSGT00390000003897.s.b.a.b.b ##34	ENSGT00390000002034 #35	ENSGT00940000153588.b #36	ENSGT00940000162426 #37	ENSGT00940000162843
Steppe mouse	MODERN SPECIES	1616															Ikbkg (ENSMSIG00000001456) #23	G6pdx (ENSMSIG00000001388) #22
spretus	MODERN SPECIES	19	Rab39b (MGP_SPRETEiJ_G0034360)	Vbp1 (MGP_SPRETEiJ_G0034359)	Brcc3 (MGP_SPRETEiJ_G0034358) ##12	Mtcp1 (MGP_SPRETEiJ_G0034357) #13	Cmc4 (MGP_SPRETEiJ_G0034356) #14	Fundc2 (MGP_SPRETEiJ_G0034355) #15	F8 (MGP_SPRETEiJ_G0034354) #16	Smim9 (MGP_SPRETEiJ_G0034353) #17	Mpp1 (MGP_SPRETEiJ_G0034352) #18	Dkc1 (MGP_SPRETEiJ_G0034351) #19	MGP_SPRETEiJ_G0034348 ##27	MGP_SPRETEiJ_G0034347	Or13ae2 (MGP_SPRETEiJ_G0034346) #20	Or7r1 (MGP_SPRETEiJ_G0034345) #21	MGP_SPRETEiJ_G0034344 ##27	G6pdx (MGP_SPRETEiJ_G0034343) #22	Ikbkg (MGP_SPRETEiJ_G0034342) #23	Fam3a (MGP_SPRETEiJ_G0034341) #24	Slc10a3 (MGP_SPRETEiJ_G0034340) #25	Ubl4a (MGP_SPRETEiJ_G0034339) #26	Lage3 (MGP_SPRETEiJ_G0034338) #27	Plxna3 (MGP_SPRETEiJ_G0034337) #28	Fam50a (MGP_SPRETEiJ_G0034336) #29	Gdi1 (MGP_SPRETEiJ_G0034335) #30	Atp6ap1 (MGP_SPRETEiJ_G0034334) #31	Tafazzin (MGP_SPRETEiJ_G0034333) #32	Dnase1l1 (MGP_SPRETEiJ_G0034332) #33	MGP_SPRETEiJ_G0034331 ##34	Emd (MGP_SPRETEiJ_G0034330) #35	Flna (MGP_SPRETEiJ_G0034329) #36	Tktl1 (MGP_SPRETEiJ_G0034328) #37