Hystricomorpha_a	ANCESTRAL SPECIES	1	ENSGT00930000151037 #7	ENSGT00390000012439 #9	ENSGT00940000157931 #10	ENSGT00940000160929 #11	ENSGT00940000159408 #12	ENSGT00940000159980 #13	ENSGT00940000153395.b #14	ENSGT00390000013828	ENSGT00940000160527.f	ENSGT00390000017402 #15	ENSGT00390000012490 #16	ENSGT00940000159291 #17	ENSGT00940000154513.B #19	ENSGT00390000007643 #20	ENSGT01030000234558.A.a.a.b #21	ENSGT00390000013727.c #22	ENSGT00390000003768 #23	ENSGT00510000049215	ENSGT00940000161800 #24	ENSGT00950000183083.b #25	ENSGT00940000158724 #26	ENSGT00940000157630.h	ENSGT00940000157630.g.a	ENSGT00940000157630.g.b	ENSGT00940000162160	ENSGT00390000014553	ENSGT00940000162571	ENSGT00940000170582	ENSGT00940000159410	ENSGT00940000154570.b	ENSGT00390000009278
Hystricomorpha_b	ANCESTRAL SPECIES	47	ENSGT00930000151037 #7	ENSGT00390000012439 #9	ENSGT00940000157931 #10	ENSGT00940000160929 #11	ENSGT00940000159408 #12	ENSGT00940000159980 #13	ENSGT00940000153395.b #14	ENSGT00390000013828	ENSGT00940000160527.f	ENSGT00390000017402 #15	ENSGT00390000012490 #16	ENSGT00940000159291 #17	ENSGT00940000154513.B #19	ENSGT00390000007643 #20	ENSGT01030000234558.A.a.a.b #21	ENSGT00390000013727.c #22	ENSGT00390000003768 #23	ENSGT00510000049215	ENSGT00940000161800 #24	ENSGT00950000183083.b #25	ENSGT00940000158724 #26	ENSGT00940000157630.g.a.a	ENSGT00940000157630.g.b	ENSGT00940000162160	ENSGT00390000014553
Degu	MODERN SPECIES	154	MTOR (ENSODEG00000013301) #7	ANGPTL7 (ENSODEG00000014472) #8	UBIAD1 (ENSODEG00000012730) #9	DISP3 (ENSODEG00000013940) #10	FBXO2 (ENSODEG00000014000) #11	FBXO44 (ENSODEG00000013642) #12	FBXO6 (ENSODEG00000012870) #13	MAD2L2 (ENSODEG00000014183) #14	AGTRAP (ENSODEG00000014964) #15	MTHFR (ENSODEG00000013407) #16	CLCN6 (ENSODEG00000013643) #17	ENSODEG00000012795 #18	NPPA (ENSODEG00000013314) #19	KIAA2013 (ENSODEG00000013918) #20	PLOD1 (ENSODEG00000013340) #21	MFN2 (ENSODEG00000015359) #22	MIIP (ENSODEG00000012969) #23	TNFRSF1B (ENSODEG00000013661) #24	VPS13D (ENSODEG00000013523) #25	DHRS3 (ENSODEG00000013556) #26	ENSODEG00000014725 #27
Long-tailed chinchilla	MODERN SPECIES	193	MTOR (ENSCLAG00000009558) #7	UBIAD1 (ENSCLAG00000008367) #9	DISP3 (ENSCLAG00000007721) #10	FBXO2 (ENSCLAG00000006915) #11	FBXO44 (ENSCLAG00000006164) #12	FBXO6 (ENSCLAG00000004528) #13	MAD2L2 (ENSCLAG00000004348) #14	DRAXIN (ENSCLAG00000005857)	ENSCLAG00000005422	AGTRAP (ENSCLAG00000005252) #15	MTHFR (ENSCLAG00000004974) #16	CLCN6 (ENSCLAG00000008993) #17	NPPA (ENSCLAG00000011401) #19	PLOD1 (ENSCLAG00000013276) #21	KIAA2013 (ENSCLAG00000012083) #20	MFN2 (ENSCLAG00000009293) #22	MIIP (ENSCLAG00000008183) #23	ENSCLAG00000011220	TNFRSF1B (ENSCLAG00000017193) #24	VPS13D (ENSCLAG00000006701) #25	DHRS3 (ENSCLAG00000005004) #26	ENSCLAG00000006201	ENSCLAG00000005781	ENSCLAG00000005674	AADACL3 (ENSCLAG00000005582)	CFAP107 (ENSCLAG00000005264)
Guinea pig	MODERN SPECIES	25	MTOR (ENSCPOG00000011641) #7	UBIAD1 (ENSCPOG00000034388) #9	DISP3 (ENSCPOG00000007061) #10	FBXO2 (ENSCPOG00000012611) #11	FBXO44 (ENSCPOG00000026240) #12	MAD2L2 (ENSCPOG00000022099) #14	FBXO6 (ENSCPOG00000037191) #13	DRAXIN (ENSCPOG00000014214)	ENSCPOG00000004934	AGTRAP (ENSCPOG00000030800) #15	MTHFR (ENSCPOG00000002899) #16	CLCN6 (ENSCPOG00000003508) #17	NPPA (ENSCPOG00000019564) #19	KIAA2013 (ENSCPOG00000022694) #20	PLOD1 (ENSCPOG00000020909) #21	MFN2 (ENSCPOG00000006834) #22	MIIP (ENSCPOG00000032652) #23	ENSCPOG00000009191	TNFRSF1B (ENSCPOG00000020299) #24	VPS13D (ENSCPOG00000010440) #25	DHRS3 (ENSCPOG00000001600) #26	ENSCPOG00000010237	ENSCPOG00000015038	ENSCPOG00000011374	AADACL3 (ENSCPOG00000000228)	CFAP107 (ENSCPOG00000003643)	LRRC38 (ENSCPOG00000031681)	ENSCPOG00000038973	PRDM2 (ENSCPOG00000038436)	ENSCPOG00000007591	ENSCPOG00000035462