Bilateria	DUPLICATION
Bilateria	ANCESTRAL SPECIES																	ENSGT00390000012547.b #22
Chordata	ANCESTRAL SPECIES																	ENSGT00390000012547.b #22
Vertebrata	ANCESTRAL SPECIES																	ENSGT00390000012547.b #22
Gnathostomata	ANCESTRAL SPECIES	180		ENSGT00940000155053 #8	ENSGT00940000157137 #9	ENSGT00940000154695 #10	ENSGT00390000005983	ENSGT00940000157192 #11	ENSGT00530000063186.b.b #12	ENSGT01030000234570.d.a #13	ENSGT00940000157652 #14	ENSGT00530000063688.a #15	ENSGT00390000001447 #16	ENSGT00640000091496 #17	ENSGT00940000156597 #18	ENSGT00940000159094 #20	ENSGT00940000156307.b #21	ENSGT00390000012547.b #22
Euteleostomi	ANCESTRAL SPECIES	40	ENSGT00940000156532	ENSGT00720000108792.B #7	ENSGT00940000157137 #9	ENSGT00940000154695 #10	ENSGT00390000005983	ENSGT00940000157192 #11	ENSGT00530000063186.b.b #12	ENSGT01030000234570.d.a #13	ENSGT00940000157652 #14	ENSGT00530000063688.a #15	ENSGT00390000001447 #16	ENSGT00640000091496 #17	ENSGT00940000156597.b #18	ENSGT00940000159094 #20	ENSGT00940000156307.b #21	ENSGT00390000012547.b #22	ENSGT00940000159743 #31	ENSGT00940000162639 #32	ENSGT00940000155408 #35	ENSGT00940000155235 #36	ENSGT00940000161191.B	ENSGT00940000154453.a.a ##33	ENSGT00940000157249 #34
Sarcopterygii	ANCESTRAL SPECIES	95	ENSGT00940000156532	ENSGT00720000108792.B #7	ENSGT00940000157137 #9	ENSGT00940000154695 #10	ENSGT00390000005983	ENSGT00940000157192 #11	ENSGT00530000063186.b.b #12	ENSGT01030000234570.d.a #13	ENSGT00940000157652 #14	ENSGT00530000063688.a #15	ENSGT00390000001447 #16	ENSGT00640000091496 #17	ENSGT00940000156597.b #18	ENSGT00940000159094 #20	ENSGT00940000156307.b #21	ENSGT00390000012547.b #22	ENSGT00940000159743 #31	ENSGT00940000162639 #32	ENSGT00940000155408 #35	ENSGT00940000155235 #36	ENSGT00940000161191.B	ENSGT00940000154453.b #33	ENSGT00940000157249 #34
Tetrapoda	ANCESTRAL SPECIES	6	ENSGT00940000156532	ENSGT00720000108792.B #7	ENSGT00940000157137 #9	ENSGT00940000154695 #10	ENSGT00390000005983	ENSGT00940000157192 #11	ENSGT00530000063186.b.b #12	ENSGT01030000234570.d.a #13	ENSGT00940000157652 #14	ENSGT00530000063688.a #15	ENSGT00390000001447 #16	ENSGT00640000091496 #17	ENSGT00940000156597.b #18	ENSGT00940000159094 #20	ENSGT00940000156307.b #21	ENSGT00390000012547.b #22	ENSGT00940000159743 #31	ENSGT00940000162639 #32	ENSGT00940000161191.B	ENSGT00940000154453.b #33	ENSGT00940000157249 #34	ENSGT00940000155408 #35	ENSGT00940000155235 #36	ENSGT00940000161508	ENSGT01030000234607.A.b	ENSGT00530000063410.b	ENSGT00940000162403	ENSGT00390000015769.B	ENSGT00940000158781	ENSGT00940000160642	ENSGT00950000183014.f.a
Amniota	ANCESTRAL SPECIES	6	ENSGT00940000155053 #8	ENSGT00940000157137 #9	ENSGT00940000154695 #10	ENSGT00940000157192 #11	ENSGT00530000063186.b.b #12	ENSGT01030000234570.d.a #13	ENSGT00940000157652 #14	ENSGT00530000063688.a #15	ENSGT00390000001447 #16	ENSGT01030000235330	ENSGT00640000091496 #17	ENSGT00940000156597.b #18	ENSGT00940000159094 #20	ENSGT00940000156307.b #21	ENSGT00940000177631	ENSGT00390000012547.b #22	ENSGT00960000187202	ENSGT00390000004840 #23	ENSGT00940000156190 #25	ENSGT00940000159232 #26	ENSGT00940000163494.a.b.g.b	ENSGT00940000159743 #31	ENSGT00940000162639 #32	ENSGT00940000161191.B	ENSGT00940000154453.b #33	ENSGT00940000157249 #34	ENSGT00940000155408 #35	ENSGT00940000155235 #36	ENSGT00940000161508	ENSGT01030000234607.A.b	ENSGT00530000063410.b
Mammalia	ANCESTRAL SPECIES	6	ENSGT00940000155053 #8	ENSGT00940000157137 #9	ENSGT00940000154695 #10	ENSGT00940000157192 #11	ENSGT00530000063186.b.b #12	ENSGT01030000234570.d.a #13	ENSGT00940000157652 #14	ENSGT00530000063688.a #15	ENSGT00390000001447 #16	ENSGT01030000235330	ENSGT00640000091496 #17	ENSGT00940000156597.b #18	ENSGT00940000159094 #20	ENSGT00940000156307.b #21	ENSGT00940000177631	ENSGT00390000012547.b #22	ENSGT00960000187202	ENSGT00390000004840 #23	ENSGT00940000156190 #25	ENSGT00940000159232 #26	ENSGT00940000159743 #31	ENSGT00940000162639 #32	ENSGT00940000154453.b #33	ENSGT00940000157249 #34	ENSGT00940000155408 #35	ENSGT00940000155235 #36	ENSGT00940000161508	ENSGT01030000234607.A.b	ENSGT00530000063410.b	ENSGT00940000162403	ENSGT00390000015769.B
Theria	ANCESTRAL SPECIES	5	ENSGT00940000155053 #8	ENSGT00940000157137 #9	ENSGT00940000154695 #10	ENSGT00940000157192 #11	ENSGT00530000063186.b.b #12	ENSGT01030000234570.d.a #13	ENSGT00940000157652 #14	ENSGT00530000063688.a #15	ENSGT00390000001447 #16	ENSGT01030000235330	ENSGT00640000091496 #17	ENSGT00940000156597.b #18	ENSGT00940000159094 #20	ENSGT00940000156307.b #21	ENSGT00940000177631	ENSGT00390000012547.b #22	ENSGT00960000187202	ENSGT00390000004840 #23	ENSGT00940000156190 #25	ENSGT00940000159232 #26	ENSGT00940000158720	ENSGT00940000163272 #19	ENSGT00940000159743 #31	ENSGT00940000162639 #32	ENSGT00940000154453.b #33	ENSGT00940000157249 #34	ENSGT00940000155408 #35	ENSGT00940000155235 #36	ENSGT00940000161508	ENSGT01030000234607.A.b	ENSGT00530000063410.b
Eutheria	ANCESTRAL SPECIES	10	ENSGT00940000155053 #8	ENSGT00940000157137 #9	ENSGT00940000154695 #10	ENSGT00940000157192 #11	ENSGT00530000063186.b.b #12	ENSGT01030000234570.d.a #13	ENSGT00940000157652 #14	ENSGT00530000063688.a #15	ENSGT00390000001447 #16	ENSGT01030000235330	ENSGT00640000091496 #17	ENSGT00940000156597.b #18	ENSGT00940000159094 #20	ENSGT00940000156307.b #21	ENSGT00940000177631	ENSGT00390000012547.b #22	ENSGT00390000004840 #23	ENSGT00940000156190.h #25	ENSGT00940000159232.h.a #26	ENSGT00940000156190.g ##25	ENSGT00940000159232.h.b #27	ENSGT00940000158720.c.a	ENSGT00940000163272 #19	ENSGT00940000158720.c.b	ENSGT00940000159743 #31	ENSGT00940000162639 #32	ENSGT00940000154453.b.b ##33	ENSGT00940000157249 #34	ENSGT00940000155408 #35	ENSGT00940000155235 #36	ENSGT00940000161508
Boreoeutheria	ANCESTRAL SPECIES	14	ENSGT00940000157137 #9	ENSGT00390000002231.d.b	ENSGT00940000154695 #10	ENSGT00940000157192 #11	ENSGT00530000063186.b.b #12	ENSGT01030000234570.d.a #13	ENSGT00940000157652 #14	ENSGT00530000063688.a #15	ENSGT00390000001447 #16	ENSGT01030000235330	ENSGT00640000091496 #17	ENSGT00940000156597.b #18	ENSGT00940000159094 #20	ENSGT00940000156307.b #21	ENSGT00940000177631	ENSGT00390000012547.b #22	ENSGT00390000004840 #23	ENSGT00940000156190.h #25	ENSGT00940000159232.h.a #26	ENSGT00940000156190.g ##25	ENSGT00940000159232.h.b #27	ENSGT00940000158720.c.a	ENSGT00940000158720.c.b	ENSGT00940000159743 #31	ENSGT00940000162639 #32	ENSGT00940000154453.b.b ##33	ENSGT00940000154453.b.a.a #33	ENSGT00940000157249 #34	ENSGT00940000155408 #35	ENSGT00940000155235 #36	ENSGT00940000161508
Euarchontoglires	ANCESTRAL SPECIES	14	ENSGT00720000108792.B #7	ENSGT00940000155053 #8	ENSGT00940000157137 #9	ENSGT00390000002231.d.b	ENSGT00940000154695 #10	ENSGT00940000157192 #11	ENSGT00530000063186.b.b #12	ENSGT01030000234570.d.a #13	ENSGT00940000157652 #14	ENSGT00530000063688.a #15	ENSGT00390000001447 #16	ENSGT00640000091496 #17	ENSGT00940000156597.b #18	ENSGT00940000159094 #20	ENSGT00940000156307.b #21	ENSGT00390000012547.b #22	ENSGT00390000004840 #23	ENSGT00940000156190.h #25	ENSGT00940000159232.h.a #26	ENSGT00940000159232.h.b #27	ENSGT00940000158720.c.a	ENSGT00940000158720.c.b	ENSGT00940000159743 #31	ENSGT00940000162639 #32	ENSGT00940000154453.b.a.b ##33	ENSGT00940000157249 #34	ENSGT00940000155408 #35	ENSGT00940000155235 #36	ENSGT00940000161508	ENSGT01030000234607.A.b	ENSGT00530000063410.b
Euarchontoglires_A	ANCESTRAL SPECIES	13	ENSGT00720000108792.B #7	ENSGT00940000155053 #8	ENSGT00940000157137 #9	ENSGT00390000002231.d.b	ENSGT00940000154695 #10	ENSGT00940000157192 #11	ENSGT00530000063186.b.b #12	ENSGT01030000234570.d.a #13	ENSGT00940000157652 #14	ENSGT00530000063688.a #15	ENSGT00390000001447 #16	ENSGT00640000091496 #17	ENSGT00940000156597.b #18	ENSGT00940000159094 #20	ENSGT00940000156307.b #21	ENSGT00390000012547.b #22	ENSGT00390000004840 #23	ENSGT00940000156190.h #25	ENSGT00940000159232.h.a #26	ENSGT00940000156190.g ##25	ENSGT00940000159232.h.b #27	ENSGT00940000158720.c.a	ENSGT00940000163272.a.a #19	ENSGT00940000158720.c.b	ENSGT00940000159743 #31	ENSGT00940000162639 #32	ENSGT00940000154453.b.a.a #33	ENSGT00940000157249 #34	ENSGT00940000155408 #35	ENSGT00940000155235 #36	ENSGT00940000161508
Glires	ANCESTRAL SPECIES	14	ENSGT00720000108792.B #7	ENSGT00940000155053 #8	ENSGT00940000157137 #9	ENSGT00390000002231.d.b	ENSGT00940000154695 #10	ENSGT00940000157192 #11	ENSGT00530000063186.b.b #12	ENSGT01030000234570.d.a #13	ENSGT00940000157652 #14	ENSGT00530000063688.a #15	ENSGT00390000001447 #16	ENSGT00640000091496 #17	ENSGT00940000156597.b #18	ENSGT00940000159094 #20	ENSGT00940000156307.b #21	ENSGT00390000012547.b #22	ENSGT00390000004840 #23	ENSGT00940000156190.h #25	ENSGT00940000159232.h.a #26	ENSGT00940000159232.h.b #27	ENSGT00940000158720.c.a	ENSGT00940000163272.a.a #19	ENSGT00940000158720.c.b	ENSGT00940000159743 #31	ENSGT00940000162639 #32	ENSGT00940000154453.b.a.a #33	ENSGT00940000157249 #34	ENSGT00940000155408 #35	ENSGT00940000155235 #36	ENSGT00940000161508	ENSGT01030000234607.A.b
Rodentia	ANCESTRAL SPECIES	14	ENSGT00940000155053 #8	ENSGT00940000157137 #9	ENSGT00390000002231.d.b	ENSGT00940000154695 #10	ENSGT00940000157192 #11	ENSGT00530000063186.b.b #12	ENSGT01030000234570.d.a #13	ENSGT00940000157652 #14	ENSGT00530000063688.a #15	ENSGT00390000001447 #16	ENSGT00640000091496 #17	ENSGT00940000156597.b #18	ENSGT00940000163272.a.a #19	ENSGT00940000159094 #20	ENSGT00940000156307.b #21	ENSGT00390000012547.b #22	ENSGT00390000004840 #23	ENSGT00940000156190.h #25	ENSGT00940000159232.h.a #26	ENSGT00940000159232.h.b #27	ENSGT00940000158720.c.a	ENSGT00940000158720.c.b	ENSGT00940000159743 #31	ENSGT00940000162639 #32	ENSGT00940000154453.b.a.a #33	ENSGT00940000157249 #34	ENSGT00940000155408 #35	ENSGT00940000155235 #36	ENSGT00940000161508	ENSGT01030000234607.A.b	ENSGT00530000063410.b
Rodentia_B	ANCESTRAL SPECIES	12	ENSGT00720000108792.B #7	ENSGT00940000155053 #8	ENSGT00940000157137 #9	ENSGT00390000002231.d.b	ENSGT00940000154695 #10	ENSGT00940000157192 #11	ENSGT00530000063186.b.b #12	ENSGT01030000234570.d.a #13	ENSGT00940000157652 #14	ENSGT00530000063688.a #15	ENSGT00390000001447 #16	ENSGT00640000091496 #17	ENSGT00940000156597.b #18	ENSGT00940000159094 #20	ENSGT00940000156307.b #21	ENSGT00390000012547.b #22	ENSGT00390000004840 #23	ENSGT00940000156190.h #25	ENSGT00940000159232.h.a #26	ENSGT00940000159232.h.b #27	ENSGT00940000163272.a.b #28	ENSGT00940000163272.a.a #19	ENSGT00940000159743 #31	ENSGT00940000162639 #32	ENSGT00940000154453.b.a.a #33	ENSGT00940000157249 #34	ENSGT00940000155408 #35	ENSGT00940000155235 #36	ENSGT00940000161508	ENSGT01030000234607.A.b	ENSGT00530000063410.b
Myomorpha	ANCESTRAL SPECIES	10	ENSGT00720000108792.B #7	ENSGT00940000155053 #8	ENSGT00940000157137 #9	ENSGT00390000002231.d.b	ENSGT00940000154695 #10	ENSGT00940000157192 #11	ENSGT00530000063186.b.b #12	ENSGT01030000234570.d.a #13	ENSGT00940000157652 #14	ENSGT00530000063688.a #15	ENSGT00390000001447 #16	ENSGT00640000091496 #17	ENSGT00940000156597.b #18	ENSGT00940000159094 #20	ENSGT00940000156307.b #21	ENSGT00390000012547.b #22	ENSGT00390000004840 #23	ENSGT00940000156190.h #25	ENSGT00940000159232.h.a #26	ENSGT00940000159232.h.b #27	ENSGT00940000163272.a.b #28	ENSGT00940000163272.a.a #19	ENSGT00940000159743 #31	ENSGT00940000162639 #32	ENSGT00940000154453.b.a.a #33	ENSGT00940000157249 #34	ENSGT00940000155408 #35	ENSGT00940000155235 #36	ENSGT00940000161508	ENSGT01030000234607.A.b	ENSGT00530000063410.b
Muroidea	ANCESTRAL SPECIES	20	ENSGT00720000108792.B #7	ENSGT00940000155053 #8	ENSGT00940000157137 #9	ENSGT00390000002231.d.b	ENSGT00940000154695 #10	ENSGT00940000157192 #11	ENSGT00530000063186.b.b #12	ENSGT01030000234570.d.a #13	ENSGT00940000157652 #14	ENSGT00530000063688.a #15	ENSGT00390000001447 #16	ENSGT00640000091496 #17	ENSGT00940000156597.b #18	ENSGT00940000159094 #20	ENSGT00940000156307.b #21	ENSGT00390000012547.b #22	ENSGT00390000004840 #23	ENSGT00940000156190.h #25	ENSGT00940000159232.h.a #26	ENSGT00940000159232.h.b #27	ENSGT00940000163272.a.b #28	ENSGT00940000163272.a.a #19	ENSGT00940000159743 #31	ENSGT00940000162639 #32	ENSGT00940000154453.b.a.a #33	ENSGT00940000157249 #34	ENSGT00940000155408 #35	ENSGT00940000155235 #36	ENSGT01030000234607.A.b	ENSGT00530000063410.b	ENSGT00940000162403
Muroidea_A	ANCESTRAL SPECIES	19	ENSGT00720000108792.B #7	ENSGT00940000155053 #8	ENSGT00940000157137 #9	ENSGT00390000002231.d.b	ENSGT00940000154695 #10	ENSGT00940000157192 #11	ENSGT00530000063186.b.b #12	ENSGT01030000234570.d.a #13	ENSGT00940000157652 #14	ENSGT00530000063688.a #15	ENSGT00390000001447 #16	ENSGT00640000091496 #17	ENSGT00940000156597.b #18	ENSGT00940000159094 #20	ENSGT00940000156307.b #21	ENSGT00390000012547.b #22	ENSGT00390000004840 #23	ENSGT00940000156190.h #25	ENSGT00940000159232.h.a #26	ENSGT00940000159232.h.b #27	ENSGT00940000163272.a.b #28	ENSGT00940000163272.a.a #19	ENSGT00940000159743 #31	ENSGT00940000162639 #32	ENSGT00940000154453.b.a.a #33	ENSGT00940000157249 #34	ENSGT00940000155408 #35	ENSGT00940000155235 #36	ENSGT01030000234607.A.b	ENSGT00530000063410.b	ENSGT00940000162403
Murinae	ANCESTRAL SPECIES	9	ENSGT00940000155053 #8	ENSGT00940000157137 #9	ENSGT00390000002231.d.b	ENSGT00940000154695 #10	ENSGT00940000157192 #11	ENSGT00530000063186.b.b #12	ENSGT01030000234570.d.a #13	ENSGT00940000157652 #14	ENSGT00530000063688.a #15	ENSGT00390000001447 #16	ENSGT00640000091496 #17	ENSGT00940000156597.b #18	ENSGT00940000163272.a.a #19	ENSGT00940000159094 #20	ENSGT00940000156307.b #21	ENSGT00390000012547.b #22	ENSGT00390000004840 #23	ENSGT00940000156190.h #25	ENSGT00940000159232.h.a #26	ENSGT00940000159232.h.b #27	ENSGT00940000163272.a.b #28	ENSGT00940000159743 #31	ENSGT00940000162639 #32	ENSGT00940000154453.b.a.a #33	ENSGT00940000157249 #34	ENSGT00940000155408 #35	ENSGT00940000155235 #36	ENSGT01030000234607.A.b	ENSGT00530000063410.b	ENSGT00940000162403	ENSGT00390000015769.B
Mus	ANCESTRAL SPECIES	5	ENSGT00940000155053 #8	ENSGT00940000157137 #9	ENSGT00390000002231.d.b	ENSGT00940000154695 #10	ENSGT00940000157192 #11	ENSGT00530000063186.b.b #12	ENSGT01030000234570.d.a #13	ENSGT00940000157652 #14	ENSGT00530000063688.a #15	ENSGT00390000001447 #16	ENSGT00640000091496 #17	ENSGT00940000156597.b #18	ENSGT00940000163272.a.a.i #19	ENSGT00940000159094 #20	ENSGT00940000156307.b #21	ENSGT00390000012547.b #22	ENSGT00390000004840 #23	ENSGT00940000156190.h #25	ENSGT00940000159232.h.a #26	ENSGT00940000159232.h.b #27	ENSGT00940000163272.a.b #28	ENSGT00940000163272.a.a.j #29	ENSGT00940000153677.u.b.b.a.a.b #30	ENSGT00940000159743 #31	ENSGT00940000162639 #32	ENSGT00940000154453.b.a.a #33	ENSGT00940000157249 #34	ENSGT00940000155408 #35	ENSGT00940000155235 #36	ENSGT00860000135862 #37	ENSGT01030000234607.A.b
Mus_A	ANCESTRAL SPECIES	5	ENSGT00940000155053 #8	ENSGT00940000157137 #9	ENSGT00390000002231.d.b	ENSGT00940000154695 #10	ENSGT00940000157192 #11	ENSGT00530000063186.b.b #12	ENSGT01030000234570.d.a #13	ENSGT00940000157652 #14	ENSGT00530000063688.a #15	ENSGT00390000001447 #16	ENSGT00640000091496 #17	ENSGT00940000156597.b #18	ENSGT00940000163272.a.a.i #19	ENSGT00940000159094 #20	ENSGT00940000156307.b #21	ENSGT00390000012547.b #22	ENSGT00390000004840 #23	ENSGT00940000156190.h #25	ENSGT00940000159232.h.a #26	ENSGT00940000159232.h.b #27	ENSGT00940000163272.a.b #28	ENSGT00940000163272.a.a.j #29	ENSGT00940000153677.u.b.b.a.a.b #30	ENSGT00940000159743 #31	ENSGT00940000162639 #32	ENSGT00940000154453.b.a.a.c #33	ENSGT00940000157249 #34	ENSGT00940000155408 #35	ENSGT00940000155235 #36	ENSGT00860000135862 #37	ENSGT01030000234607.A.b
Ryukyu mouse	MODERN SPECIES		Vwc2l (MGP_CAROLIEiJ_G0014235) #7	Spag16 (MGP_CAROLIEiJ_G0014234) #8	Ikzf2 (MGP_CAROLIEiJ_G0014233) #9	Erbb4 (MGP_CAROLIEiJ_G0014232) #10	Cps1 (MGP_CAROLIEiJ_G0014231) #11	Lancl1 (MGP_CAROLIEiJ_G0014230) #12	Myl1 (MGP_CAROLIEiJ_G0014229) #13	Acadl (MGP_CAROLIEiJ_G0014228) #14	Kansl1l (MGP_CAROLIEiJ_G0014227) #15	Rpe (MGP_CAROLIEiJ_G0014226) #16	Unc80 (MGP_CAROLIEiJ_G0014225) #17	Map2 (MGP_CAROLIEiJ_G0014224) #18	Crygf (MGP_CAROLIEiJ_G0014223) #19	Pth2r (MGP_CAROLIEiJ_G0014222) #20	Pikfyve (MGP_CAROLIEiJ_G0014221) #21	Idh1 (MGP_CAROLIEiJ_G0014220) #22	MGP_CAROLIEiJ_G0014219 #23	MGP_CAROLIEiJ_G0014218 #24	Cryga (MGP_CAROLIEiJ_G0014217) #25	Crygb (MGP_CAROLIEiJ_G0014216) #26	Crygc (MGP_CAROLIEiJ_G0014215) #27	Crygd (MGP_CAROLIEiJ_G0014214) #28	Cryge (MGP_CAROLIEiJ_G0014213) #29	Akr1cl (MGP_CAROLIEiJ_G0014212) #30	Plekhm3 (MGP_CAROLIEiJ_G0014211) #31	Fzd5 (MGP_CAROLIEiJ_G0014210) #32	Ccnyl1 (MGP_CAROLIEiJ_G0014209) #33	Mettl21a (MGP_CAROLIEiJ_G0014208) #34	Creb1 (MGP_CAROLIEiJ_G0014207) #35	Klf7 (MGP_CAROLIEiJ_G0014206) #36	MGP_CAROLIEiJ_G0014205 #37
Mus_B	ANCESTRAL SPECIES	7	ENSGT00940000155053 #8	ENSGT00940000157137 #9	ENSGT00390000002231.d.b	ENSGT00940000154695 #10	ENSGT00940000157192 #11	ENSGT00530000063186.b.b #12	ENSGT01030000234570.d.a #13	ENSGT00940000157652 #14	ENSGT00530000063688.a #15	ENSGT00390000001447 #16	ENSGT00640000091496 #17	ENSGT00940000156597.b #18	ENSGT00940000163272.a.a.i #19	ENSGT00940000159094 #20	ENSGT00940000156307.b #21	ENSGT00390000012547.b #22	ENSGT00390000004840 #23	ENSGT00940000156190.h #25	ENSGT00940000159232.h.a #26	ENSGT00940000159232.h.b #27	ENSGT00940000163272.a.b #28	ENSGT00940000163272.a.a.j #29	ENSGT00940000153677.u.b.b.a.a.b #30	ENSGT00940000159743 #31	ENSGT00940000162639 #32	ENSGT00940000154453.b.a.a.c #33	ENSGT00940000157249 #34	ENSGT00940000155408 #35	ENSGT00940000155235 #36	ENSGT00860000135862 #37	ENSGT01030000234607.A.b
Mouse	MODERN SPECIES		Vwc2l (ENSMUSG00000045648) #7	Spag16 (ENSMUSG00000053153) #8	Ikzf2 (ENSMUSG00000025997) #9	Erbb4 (ENSMUSG00000062209) #10	Cps1 (ENSMUSG00000025991) #11	Lancl1 (ENSMUSG00000026000) #12	Myl1 (ENSMUSG00000061816) #13	Acadl (ENSMUSG00000026003) #14	Kansl1l (ENSMUSG00000026004) #15	Rpe (ENSMUSG00000026005) #16	Unc80 (ENSMUSG00000055567) #17	Map2 (ENSMUSG00000015222) #18	Crygf (ENSMUSG00000025945) #19	Pth2r (ENSMUSG00000025946) #20	Pikfyve (ENSMUSG00000025949) #21	Idh1 (ENSMUSG00000025950) #22	D630023F18Rik (ENSMUSG00000044816) #23	Gm28845 (ENSMUSG00000100846)	Cryga (ENSMUSG00000044429) #25	Crygb (ENSMUSG00000073658) #26	Crygc (ENSMUSG00000025952) #27	Crygd (ENSMUSG00000067299) #28	Cryge (ENSMUSG00000070870) #29	Akr1cl (ENSMUSG00000025955) #30	Plekhm3 (ENSMUSG00000051344) #31	Fzd5 (ENSMUSG00000045005) #32	Ccnyl1 (ENSMUSG00000070871) #33	Mettl21a (ENSMUSG00000025956) #34	Creb1 (ENSMUSG00000025958) #35	Klf7 (ENSMUSG00000025959) #36	Fastkd2 (ENSMUSG00000025962)
Mus_C	ANCESTRAL SPECIES	1	ENSGT00940000155053 #8	ENSGT00940000157137 #9	ENSGT00390000002231.d.b	ENSGT00940000154695 #10	ENSGT00940000157192 #11	ENSGT00530000063186.b.b #12	ENSGT01030000234570.d.a #13	ENSGT00940000157652 #14	ENSGT00530000063688.a #15	ENSGT00390000001447 #16	ENSGT00640000091496 #17	ENSGT00940000156597.b #18	ENSGT00940000163272.a.a.i #19	ENSGT00940000159094 #20	ENSGT00940000156307.b #21	ENSGT00390000012547.b #22	ENSGT00390000004840 #23	ENSGT00940000156190.h #25	ENSGT00940000159232.h.a #26	ENSGT00940000159232.h.b #27	ENSGT00940000163272.a.b #28	ENSGT00940000163272.a.a.j #29	ENSGT00940000153677.u.b.b.a.a.b #30	ENSGT00940000159743 #31	ENSGT00940000162639 #32	ENSGT00940000154453.b.a.a.c #33	ENSGT00940000157249 #34	ENSGT00940000155408 #35	ENSGT00940000155235 #36	ENSGT00860000135862 #37	ENSGT01030000234607.A.b
Steppe mouse	MODERN SPECIES	2933														Pth2r (ENSMSIG00000009418) #20	Pikfyve (ENSMSIG00000009459) #21	Idh1 (ENSMSIG00000009702) #22	D630023F18Rik (ENSMSIG00000009745) #23	Cryga (ENSMSIG00000009786) #25	Crygb (ENSMSIG00000009796) #26	Crygc (ENSMSIG00000009814) #27	Crygd (ENSMSIG00000009826) #28	Cryge (ENSMSIG00000009838) #29	Akr1cl (ENSMSIG00000009845) #30	Plekhm3 (ENSMSIG00000009894) #31	Fzd5 (ENSMSIG00000009924) #32	ENSMSIG00000009939 ##33	Mettl21a (ENSMSIG00000009970) #34	ENSMSIG00000009988	Creb1 (ENSMSIG00000009993) #35	Klf7 (ENSMSIG00000010033) #36	ENSMSIG00000010064
spretus	MODERN SPECIES		Vwc2l (MGP_SPRETEiJ_G0015042) #7	Spag16 (MGP_SPRETEiJ_G0015041) #8	Ikzf2 (MGP_SPRETEiJ_G0015040) #9	Erbb4 (MGP_SPRETEiJ_G0015039) #10	Cps1 (MGP_SPRETEiJ_G0015038) #11	Lancl1 (MGP_SPRETEiJ_G0015037) #12	Myl1 (MGP_SPRETEiJ_G0015036) #13	Acadl (MGP_SPRETEiJ_G0015035) #14	Kansl1l (MGP_SPRETEiJ_G0015034) #15	Rpe (MGP_SPRETEiJ_G0015033) #16	Unc80 (MGP_SPRETEiJ_G0015032) #17	Map2 (MGP_SPRETEiJ_G0015031) #18	Crygf (MGP_SPRETEiJ_G0015030) #19	Pth2r (MGP_SPRETEiJ_G0015029) #20	Pikfyve (MGP_SPRETEiJ_G0015028) #21	Idh1 (MGP_SPRETEiJ_G0015027) #22	MGP_SPRETEiJ_G0015026 #23	MGP_SPRETEiJ_G0015025 #23	Cryga (MGP_SPRETEiJ_G0015024) #25	Crygb (MGP_SPRETEiJ_G0015023) #26	Crygc (MGP_SPRETEiJ_G0015022) #27	Crygd (MGP_SPRETEiJ_G0015021) #28	Cryge (MGP_SPRETEiJ_G0015020) #29	Akr1cl (MGP_SPRETEiJ_G0015019) #30	Plekhm3 (MGP_SPRETEiJ_G0015018) #31	Fzd5 (MGP_SPRETEiJ_G0015017) #32	Ccnyl1 (MGP_SPRETEiJ_G0015016) #33	Mettl21a (MGP_SPRETEiJ_G0015015) #34	Creb1 (MGP_SPRETEiJ_G0015014) #35	Klf7 (MGP_SPRETEiJ_G0015013) #36	MGP_SPRETEiJ_G0015012 #37
Shrew mouse	MODERN SPECIES	18	Vwc2l (MGP_PahariEiJ_G0027473) #7	Spag16 (MGP_PahariEiJ_G0027472) #8	Ikzf2 (MGP_PahariEiJ_G0027471) #9	Erbb4 (MGP_PahariEiJ_G0027470) #10	Cps1 (MGP_PahariEiJ_G0027469) #11	Lancl1 (MGP_PahariEiJ_G0027468) #12	Myl1 (MGP_PahariEiJ_G0027467) #13	Acadl (MGP_PahariEiJ_G0027466) #14	Kansl1l (MGP_PahariEiJ_G0027465) #15	Rpe (MGP_PahariEiJ_G0027464) #16	Unc80 (MGP_PahariEiJ_G0027463) #17	Map2 (MGP_PahariEiJ_G0027462) #18	MGP_PahariEiJ_G0027461 #19	MGP_PahariEiJ_G0027460 #20	Pikfyve (MGP_PahariEiJ_G0027459) #21	Idh1 (MGP_PahariEiJ_G0027458) #22	MGP_PahariEiJ_G0027457 #23	MGP_PahariEiJ_G0027456 #23	Cryga (MGP_PahariEiJ_G0027455) #25	Crygb (MGP_PahariEiJ_G0027454) #26	Crygc (MGP_PahariEiJ_G0027453) #27	Crygd (MGP_PahariEiJ_G0027452) #28	MGP_PahariEiJ_G0027451 #19	Akr1cl (MGP_PahariEiJ_G0027450) #30	Plekhm3 (MGP_PahariEiJ_G0027449) #31	Fzd5 (MGP_PahariEiJ_G0027448) #32	Ccnyl1 (MGP_PahariEiJ_G0027447) #33	Mettl21a (MGP_PahariEiJ_G0027446) #34	Creb1 (MGP_PahariEiJ_G0027445) #35	Klf7 (MGP_PahariEiJ_G0027444) #36	MGP_PahariEiJ_G0027443 #37
Rat	MODERN SPECIES	19	Ikzf2 (ENSRNOG00000027430) #9	RGD1562431 (ENSRNOG00000032306)	Erbb4 (ENSRNOG00000014248) #10	Cps1 (ENSRNOG00000013704) #11	Lancl1 (ENSRNOG00000013557) #12	Myl1 (ENSRNOG00000013262) #13	Acadl (ENSRNOG00000012966) #14	Kansl1l (ENSRNOG00000028149) #15	Rpe (ENSRNOG00000038085) #16	Unc80 (ENSRNOG00000028362) #17	Map2 (ENSRNOG00000011841) #18	ENSRNOG00000068845	Crygf (ENSRNOG00000032869) #19	Pth2r (ENSRNOG00000015259) #20	Pikfyve (ENSRNOG00000015158) #21	Idh1 (ENSRNOG00000015020) #22	Cryga (ENSRNOG00000046343) #25	Crygb (ENSRNOG00000032926) ##25	Crygc (ENSRNOG00000014950) #27	Crygd (ENSRNOG00000032219) #28	Cryga (ENSRNOG00000014790) #19	Plekhm3 (ENSRNOG00000023760) #31	Fzd5 (ENSRNOG00000014678) #32	Ccnyl1 (ENSRNOG00000023807) #33	Mettl21a (ENSRNOG00000014212) #34	Creb1 (ENSRNOG00000013412) #35	LOC103690545 (ENSRNOG00000064370)	Klf7 (ENSRNOG00000046242) #36	ENSRNOG00000063607	Fastkd2 (ENSRNOG00000023923)	ENSRNOG00000063009
Cricetidae	ANCESTRAL SPECIES	19	ENSGT00720000108792.B #7	ENSGT00940000155053 #8	ENSGT00940000157137 #9	ENSGT00390000002231.d.b	ENSGT00940000154695 #10	ENSGT00940000157192 #11	ENSGT00530000063186.b.b #12	ENSGT01030000234570.d.a #13	ENSGT00940000157652 #14	ENSGT00530000063688.a #15	ENSGT00390000001447 #16	ENSGT00640000091496 #17	ENSGT00940000156597.b #18	ENSGT00940000159094 #20	ENSGT00940000156307.b #21	ENSGT00390000012547.b #22	ENSGT00390000004840 #23	ENSGT00940000156190.h #25	ENSGT00940000159232.h.a #26	ENSGT00940000159232.h.b #27	ENSGT00940000163272.a.b #28	ENSGT00940000163272.a.a #19	ENSGT00940000159743 #31	ENSGT00940000162639 #32	ENSGT00940000154453.b.a.a #33	ENSGT00940000157249 #34	ENSGT00940000155408 #35	ENSGT00940000155235 #36	ENSGT01030000234607.A.b	ENSGT00530000063410.b	ENSGT00940000162403
Cricetidae_B	ANCESTRAL SPECIES	20	ENSGT00720000108792.B #7	ENSGT00940000155053 #8	ENSGT00940000157137 #9	ENSGT00390000002231.d.b	ENSGT00940000154695 #10	ENSGT00940000157192 #11	ENSGT00530000063186.b.b #12	ENSGT01030000234570.d.a #13	ENSGT00940000157652 #14	ENSGT00530000063688.a #15	ENSGT00390000001447 #16	ENSGT00640000091496 #17	ENSGT00940000156597.b #18	ENSGT00940000159094 #20	ENSGT00940000156307.b #21	ENSGT00390000012547.b #22	ENSGT00390000004840 #23	ENSGT00940000156190.h #25	ENSGT00940000159232.h.a #26	ENSGT00940000159232.h.b #27	ENSGT00940000163272.a.b #28	ENSGT00940000163272.a.a #19	ENSGT00940000159743 #31	ENSGT00940000162639 #32	ENSGT00940000154453.b.a.a #33	ENSGT00940000157249 #34	ENSGT00940000155408 #35	ENSGT00940000155235 #36	ENSGT01030000234607.A.b	ENSGT00530000063410.b	ENSGT00940000162403
Prairie vole	MODERN SPECIES	354	Erbb4 (ENSMOCG00000016854) #10	Cps1 (ENSMOCG00000009767) #11	Lancl1 (ENSMOCG00000017471) #12	Myl1 (ENSMOCG00000021319) #13	Acadl (ENSMOCG00000022401) #14	Kansl1l (ENSMOCG00000020578) #15	Rpe (ENSMOCG00000013941) #16	Unc80 (ENSMOCG00000014746) #17	ENSMOCG00000006121	ENSMOCG00000017798 #18	ENSMOCG00000022246 #19	ENSMOCG00000014035	ENSMOCG00000016045	Pth2r (ENSMOCG00000006742) #20	Pikfyve (ENSMOCG00000014597) #21	IDH1 (ENSMOCG00000018153) #22	ENSMOCG00000008599 #23	ENSMOCG00000015565	Crygc (ENSMOCG00000017760) #27	Crygd (ENSMOCG00000018181) #28	ENSMOCG00000018497 #19	Plekhm3 (ENSMOCG00000013149) #31	Fzd5 (ENSMOCG00000013581) #32	Ccnyl1 (ENSMOCG00000016018) #33	Mettl21a (ENSMOCG00000017410) #34	Creb1 (ENSMOCG00000002192) #35	Klf7 (ENSMOCG00000009593) #36	ENSMOCG00000008631	Fastkd2 (ENSMOCG00000019859)	Mdh1b (ENSMOCG00000001314)	Dytn (ENSMOCG00000015652)
Northern American deer mouse	MODERN SPECIES	4	ENSPEMG00000024657	Erbb4 (ENSPEMG00000017090) #10	Cps1 (ENSPEMG00000010458) #11	Lancl1 (ENSPEMG00000020372) #12	Myl1 (ENSPEMG00000016490) #13	Acadl (ENSPEMG00000012977) #14	Kansl1l (ENSPEMG00000000580) #15	Rpe (ENSPEMG00000021162) #16	Unc80 (ENSPEMG00000020306) #17	Map2 (ENSPEMG00000020588) #18	ENSPEMG00000024512 #19	ENSPEMG00000024519	Pth2r (ENSPEMG00000008254) #20	ENSPEMG00000024955	Pikfyve (ENSPEMG00000021384) #21	Idh1 (ENSPEMG00000016518) #22	ENSPEMG00000001038	D630023F18Rik (ENSPEMG00000012946) #23	Cryga (ENSPEMG00000028371) #25	Crygb (ENSPEMG00000011613) #26	Crygc (ENSPEMG00000027882) #27	Crygd (ENSPEMG00000031321) #28	ENSPEMG00000029603 #19	Plekhm3 (ENSPEMG00000009141) #31	Fzd5 (ENSPEMG00000026977) #32	Ccnyl1 (ENSPEMG00000022762) #33	Mettl21a (ENSPEMG00000027520) #34	Creb1 (ENSPEMG00000012416) #35	Klf7 (ENSPEMG00000028836) #36	ENSPEMG00000029845	Fastkd2 (ENSPEMG00000010593)
Cricetinae	ANCESTRAL SPECIES	3	ENSGT00940000156532	ENSGT00720000108792.B #7	ENSGT00940000155053 #8	ENSGT00940000157137 #9	ENSGT00940000154695 #10	ENSGT00940000157192 #11	ENSGT00530000063186.b.b #12	ENSGT01030000234570.d.a #13	ENSGT00940000157652 #14	ENSGT00530000063688.a #15	ENSGT00390000001447 #16	ENSGT00640000091496 #17	ENSGT00940000156597.b #18	ENSGT00940000159094 #20	ENSGT00940000156307.b #21	ENSGT00390000012547.b #22	ENSGT00390000004840 #23	ENSGT00940000156190.h #25	ENSGT00940000156190.g ##25	ENSGT00940000159232.h.b #27	ENSGT00940000163272.a.b #28	ENSGT00940000163272.a.a #19	ENSGT00940000159743 #31	ENSGT00940000162639 #32	ENSGT00940000154453.b.a.a #33	ENSGT00940000157249 #34	ENSGT00940000155408 #35	ENSGT00940000155235 #36	ENSGT01030000234607.A.b	ENSGT00530000063410.b	ENSGT00940000162403
Chinese hamster chok1gshd	MODERN SPECIES	1	Vwc2l (ENSCGRG00001022705) #7	ENSCGRG00001018870 #8	Ikzf2 (ENSCGRG00001020531) #9	Erbb4 (ENSCGRG00001023006) #10	Cps1 (ENSCGRG00001019583) #11	Lancl1 (ENSCGRG00001018654) #12	Myl1 (ENSCGRG00001018385) #13	Acadl (ENSCGRG00001020753) #14	Kansl1l (ENSCGRG00001021527) #15	Rpe (ENSCGRG00001018221) #16	Unc80 (ENSCGRG00001024763) #17	Map2 (ENSCGRG00001019179) #18	ENSCGRG00001017914 #19	Pth2r (ENSCGRG00001020290) #20	Pikfyve (ENSCGRG00001019851) #21	Idh1 (ENSCGRG00001018765) #22	D630023F18Rik (ENSCGRG00001021567) #23	Cryga (ENSCGRG00001018244) #25	ENSCGRG00001020560 ##25	Crygc (ENSCGRG00001020149) #27	Crygd (ENSCGRG00001020195) #28	ENSCGRG00001020657 #19	Plekhm3 (ENSCGRG00001023068) #31	Fzd5 (ENSCGRG00001010794) #32	Ccnyl1 (ENSCGRG00001017467) #33	Mettl21a (ENSCGRG00001017438) #34	Creb1 (ENSCGRG00001018838) #35	ENSCGRG00001018665	Klf7 (ENSCGRG00001018794) #36	Fastkd2 (ENSCGRG00001020432)	Mdh1b (ENSCGRG00001017642)
Golden Hamster	MODERN SPECIES	640	ENSMAUG00000010536 #8	Ikzf2 (ENSMAUG00000017775) #9	Erbb4 (ENSMAUG00000021336) #10	Cps1 (ENSMAUG00000010923) #11	Lancl1 (ENSMAUG00000013753) #12	Myl1 (ENSMAUG00000018186) #13	Acadl (ENSMAUG00000018703) #14	Kansl1l (ENSMAUG00000013611) #15	Rpe (ENSMAUG00000011547) #16	ENSMAUG00000009679	ENSMAUG00000019100 #17	Map2 (ENSMAUG00000012012) #18	ENSMAUG00000015143 #19	Pth2r (ENSMAUG00000020947) #20	Pikfyve (ENSMAUG00000001410) #21	ENSMAUG00000001360 #22	D630023F18Rik (ENSMAUG00000022108) #23	Cryga (ENSMAUG00000019430) #25	ENSMAUG00000022086 ##19	Crygc (ENSMAUG00000009964) #27	Crygd (ENSMAUG00000020101) #28	ENSMAUG00000022028 #19	Plekhm3 (ENSMAUG00000021638) #31	Fzd5 (ENSMAUG00000022033) #32	Mettl21a (ENSMAUG00000020877) #34	Creb1 (ENSMAUG00000018215) #35	Klf7 (ENSMAUG00000022037) #36	Fastkd2 (ENSMAUG00000009136)	Mdh1b (ENSMAUG00000016431)	Dytn (ENSMAUG00000021422)	Adam23 (ENSMAUG00000012410)
Upper Galilee mountains blind mole rat	MODERN SPECIES	1322		ENSNGAG00000011292 #8	Ikzf2 (ENSNGAG00000016617) #9	Erbb4 (ENSNGAG00000012140) #10	Cps1 (ENSNGAG00000011164) #11	Lancl1 (ENSNGAG00000011473) #12	Myl1 (ENSNGAG00000014879) #13	ENSNGAG00000011216 #14	Kansl1l (ENSNGAG00000015682) #15	Rpe (ENSNGAG00000011728) #16	Unc80 (ENSNGAG00000010725) #17	ENSNGAG00000019112 #18	ENSNGAG00000018453 #19	Pth2r (ENSNGAG00000017148) #20	Pikfyve (ENSNGAG00000013615) #21	Idh1 (ENSNGAG00000006870) #22	D630023F18Rik (ENSNGAG00000013154) #23	Crygc (ENSNGAG00000017419) #27	Plekhm3 (ENSNGAG00000007962) #31	Fzd5 (ENSNGAG00000014954) #32	Ccnyl1 (ENSNGAG00000004870) #33	ENSNGAG00000014167	Mettl21a (ENSNGAG00000013752) #34	Creb1 (ENSNGAG00000018967) #35	Klf7 (ENSNGAG00000016561) #36	Fastkd2 (ENSNGAG00000001279)	Mdh1b (ENSNGAG00000000139)	Adam23 (ENSNGAG00000014933)	Zdbf2 (ENSNGAG00000010826)	Cmklr2 (ENSNGAG00000014936)	Eef1b2 (ENSNGAG00000020801)
Lesser Egyptian jerboa	MODERN SPECIES	52	Spag16 (ENSJJAG00000000768) #8	Ikzf2 (ENSJJAG00000015254) #9	Erbb4 (ENSJJAG00000021464) #10	ENSJJAG00000013028	ENSJJAG00000008457	Cps1 (ENSJJAG00000023728) #11	Lancl1 (ENSJJAG00000005677) #12	Myl1 (ENSJJAG00000000461) #13	Acadl (ENSJJAG00000021820) #14	Kansl1l (ENSJJAG00000020367) #15	ENSJJAG00000012686 #16	Unc80 (ENSJJAG00000015201) #17	Map2 (ENSJJAG00000014034) #18	Pth2r (ENSJJAG00000009843) #20	Pikfyve (ENSJJAG00000019036) #21	Idh1 (ENSJJAG00000018017) #22	D630023F18Rik (ENSJJAG00000011180) #23	Cryga (ENSJJAG00000018493) #25	ENSJJAG00000013715 ##25	Crygc (ENSJJAG00000023810) #27	Crygd (ENSJJAG00000014362) #28	ENSJJAG00000021625 #19	Plekhm3 (ENSJJAG00000012116) #31	Fzd5 (ENSJJAG00000004014) #32	Ccnyl1 (ENSJJAG00000024111) #33	ENSJJAG00000023618 #34	Creb1 (ENSJJAG00000013846) #35	Klf7 (ENSJJAG00000011480) #36	ENSJJAG00000021742	Fastkd2 (ENSJJAG00000000986)	Mdh1b (ENSJJAG00000010713)
Kangaroo rat	MODERN SPECIES	320	Erbb4 (ENSDORG00000013025) #10	Cps1 (ENSDORG00000007835) #11	Lancl1 (ENSDORG00000009233) #12	Myl1 (ENSDORG00000027836) #13	ENSDORG00000024057	Acadl (ENSDORG00000005849) #14	Kansl1l (ENSDORG00000005847) #15	Rpe (ENSDORG00000005846) #16	Unc80 (ENSDORG00000005840) #17	Map2 (ENSDORG00000005837) #18	ENSDORG00000014386	ENSDORG00000029050 #19	ENSDORG00000028731	Pth2r (ENSDORG00000005747) #20	Pikfyve (ENSDORG00000005745) #21	Idh1 (ENSDORG00000005744) #22	ENSDORG00000003879 #23	Cryga (ENSDORG00000028587) #25	ENSDORG00000023215	Crygc (ENSDORG00000023173) #27	Crygd (ENSDORG00000003876) #28	ENSDORG00000027705 #19	Plekhm3 (ENSDORG00000029697) #31	ENSDORG00000023690	Fzd5 (ENSDORG00000027490) #32	Ccnyl1 (ENSDORG00000009933) ##33	Mettl21a (ENSDORG00000012543) #34	Creb1 (ENSDORG00000012535) #35	Klf7 (ENSDORG00000009634) #36	Fastkd2 (ENSDORG00000011295)	Mdh1b (ENSDORG00000011290)
Rodentia_A	ANCESTRAL SPECIES	13	ENSGT00720000108792.B #7	ENSGT00940000155053 #8	ENSGT00940000157137 #9	ENSGT00940000154695 #10	ENSGT00940000157192 #11	ENSGT00530000063186.b.b #12	ENSGT01030000234570.d.a #13	ENSGT00940000157652 #14	ENSGT00530000063688.a #15	ENSGT00390000001447 #16	ENSGT00640000091496 #17	ENSGT00940000156597.b #18	ENSGT00940000163272.a.a #19	ENSGT00940000159094 #20	ENSGT00940000156307.b #21	ENSGT00390000012547.b #22	ENSGT00390000004840 #23	ENSGT00940000156190.h #25	ENSGT00940000156190.g ##25	ENSGT00940000159232.h.b #27	ENSGT00940000163272.a.b #28	ENSGT00940000158720.c.b	ENSGT00940000159743 #31	ENSGT00940000162639 #32	ENSGT00940000154453.b.b ##33	ENSGT00940000154453.b.a.b ##33	ENSGT00940000157249 #34	ENSGT00940000155408 #35	ENSGT00940000155235 #36	ENSGT00940000161508	ENSGT01030000234607.A.b
Hystricomorpha	DUPLICATION
Hystricomorpha	ANCESTRAL SPECIES	28	ENSGT00940000156532	ENSGT00720000108792.B #7	ENSGT00940000155053 #8	ENSGT00940000157137 #9	ENSGT00940000154695 #10	ENSGT00940000157192 #11	ENSGT00530000063186.b.b #12	ENSGT01030000234570.d.a #13	ENSGT00940000157652 #14	ENSGT00530000063688.a #15	ENSGT00390000001447 #16	ENSGT00640000091496 #17	ENSGT00940000156597.b #18	ENSGT00940000159094 #20	ENSGT00940000156307.b #21	ENSGT00390000012547.b.c #22	ENSGT00390000012547.b.d #22	ENSGT00390000004840 #23	ENSGT00940000156190.h #25	ENSGT00940000156190.g ##25	ENSGT00940000159232.h.b #27	ENSGT00940000158720.c.b	ENSGT00940000159743 #31	ENSGT00940000162639 #32	ENSGT00940000154453.b.b ##33	ENSGT00940000157249 #34	ENSGT00940000155408 #35	ENSGT00940000155235 #36	ENSGT01030000234607.A.b	ENSGT00530000063410.b	ENSGT00940000162403
Hystricomorpha_a	ANCESTRAL SPECIES																	ENSGT00390000012547.b.c #22
Hystricomorpha_b	ANCESTRAL SPECIES																	ENSGT00390000012547.b.c #22
Degu	MODERN SPECIES	57	ENSODEG00000013776	ENSODEG00000008980	CPS1 (ENSODEG00000007917) #11	ENSODEG00000008576	LANCL1 (ENSODEG00000013138) #12	MYL1 (ENSODEG00000007814) #13	ACADL (ENSODEG00000008088) #14	KANSL1L (ENSODEG00000008832) #15	ENSODEG00000008423 #16	UNC80 (ENSODEG00000009853) #17	MAP2 (ENSODEG00000009342) #18	ENSODEG00000019840	ENSODEG00000019756	PTH2R (ENSODEG00000010800) #20	PIKFYVE (ENSODEG00000008877) #21	ENSODEG00000009512 #22	C2orf80 (ENSODEG00000009684) #23	CRYGA (ENSODEG00000009878) #25	ENSODEG00000009966 ##25	CRYGC (ENSODEG00000008672) #27	ENSODEG00000019682	ENSODEG00000019703	PLEKHM3 (ENSODEG00000010028) #31	FZD5 (ENSODEG00000019794) #32	ENSODEG00000009393 ##33	METTL21A (ENSODEG00000009859) #34	CREB1 (ENSODEG00000010264) #35	ENSODEG00000009302	ENSODEG00000009956	KLF7 (ENSODEG00000010345) #36	FASTKD2 (ENSODEG00000009880)
Naked mole-rat female	MODERN SPECIES	17	LANCL1 (ENSHGLG00000036257) #12	MYL1 (ENSHGLG00000048085) #13	ENSHGLG00000004628 #14	KANSL1L (ENSHGLG00000005747) #15	ENSHGLG00000008127 #16	ENSHGLG00000018871 #17	ENSHGLG00000009762 #18	ENSHGLG00000044133	ENSHGLG00000008713	ENSHGLG00000037435	ENSHGLG00000012419	ENSHGLG00000012576	ENSHGLG00000020810	ENSHGLG00000005131 #20	PIKFYVE (ENSHGLG00000005275) #21	IDH1 (ENSHGLG00000006766) #22	ENSHGLG00000047720	ENSHGLG00000036358	C2orf80 (ENSHGLG00000007437) #23	ENSHGLG00000007763 ##25	ENSHGLG00000008764 #27	ENSHGLG00000009451	ENSHGLG00000017030 #31	ENSHGLG00000003916	ENSHGLG00000003008	ENSHGLG00000007875	ENSHGLG00000009221	PTPDC1 (ENSHGLG00000002865)	ENSHGLG00000003466	ENSHGLG00000048848	ENSHGLG00000048279
Hystricomorpha	ANCESTRAL SPECIES	28	ENSGT00720000108792.B #7	ENSGT00940000155053 #8	ENSGT00940000157137 #9	ENSGT00940000154695 #10	ENSGT00940000157192 #11	ENSGT00530000063186.b.b #12	ENSGT01030000234570.d.a #13	ENSGT00940000157652 #14	ENSGT00530000063688.a #15	ENSGT00390000001447 #16	ENSGT00640000091496 #17	ENSGT00940000156597.b #18	ENSGT00940000159094 #20	ENSGT00940000156307.b #21	ENSGT00390000012547.b.c #22	ENSGT00390000012547.b.d #22	ENSGT00390000004840 #23	ENSGT00940000156190.h #25	ENSGT00940000156190.g ##25	ENSGT00940000159232.h.b #27	ENSGT00940000158720.c.b	ENSGT00940000159743 #31	ENSGT00940000162639 #32	ENSGT00940000154453.b.b ##33	ENSGT00940000157249 #34	ENSGT00940000155408 #35	ENSGT00940000155235 #36	ENSGT01030000234607.A.b	ENSGT00530000063410.b	ENSGT00940000162403	ENSGT00390000015769.B
Hystricomorpha_a	ANCESTRAL SPECIES	67	ENSGT00940000156532	ENSGT00720000108792.B #7	ENSGT00940000155053 #8	ENSGT00940000157137 #9	ENSGT00940000154695 #10	ENSGT00940000157192 #11	ENSGT00530000063186.b.b #12	ENSGT01030000234570.d.a #13	ENSGT00940000157652 #14	ENSGT00530000063688.a #15	ENSGT00390000001447 #16	ENSGT00640000091496 #17	ENSGT00940000156597.b #18	ENSGT00940000159094 #20	ENSGT00940000156307.b #21	ENSGT00390000012547.b.d #22	ENSGT00390000004840 #23	ENSGT00940000156190.h #25	ENSGT00940000156190.g ##25	ENSGT00940000159232.h.b #27	ENSGT00940000159743 #31	ENSGT00940000162639 #32	ENSGT00940000154453.b.b ##33	ENSGT00940000157249 #34	ENSGT00940000155408 #35	ENSGT00940000155235 #36	ENSGT01030000234607.A.b	ENSGT00530000063410.b	ENSGT00940000162403	ENSGT00940000158781	ENSGT00940000160642
Hystricomorpha_b	ANCESTRAL SPECIES	52	ENSGT00940000156532	ENSGT00720000108792.B #7	ENSGT00940000155053 #8	ENSGT00940000157137 #9	ENSGT00940000154695 #10	ENSGT00940000157192 #11	ENSGT00530000063186.b.b #12	ENSGT01030000234570.d.a #13	ENSGT00940000157652 #14	ENSGT00530000063688.a #15	ENSGT00390000001447 #16	ENSGT00640000091496 #17	ENSGT00940000156597.b #18	ENSGT00940000159094 #20	ENSGT00940000156307.b #21	ENSGT00390000012547.b.d #22	ENSGT00390000004840 #23	ENSGT00940000156190.h #25	ENSGT00940000156190.g ##25	ENSGT00940000159232.h.b #27	ENSGT00940000159743 #31	ENSGT00940000162639 #32	ENSGT00940000154453.b.b ##33	ENSGT00940000157249 #34	ENSGT00940000155408 #35	ENSGT00940000155235 #36	ENSGT01030000234607.A.b	ENSGT00530000063410.b	ENSGT00940000162403	ENSGT00940000158781	ENSGT00940000160642
Degu	DUPLICATION
Degu	MODERN SPECIES	216															ENSODEG00000002756	ENSODEG00000002722 #22	ENSODEG00000002633	PCDH9 (ENSODEG00000002576)	ENSODEG00000018812
Degu	MODERN SPECIES	71	ENSODEG00000007585	LRRN1 (ENSODEG00000007430)	ENSODEG00000006737	ENSODEG00000008720	TRNT1 (ENSODEG00000007597)	IL5RA (ENSODEG00000006715)	CNTN4 (ENSODEG00000007155)	CNTN6 (ENSODEG00000006499)	ENSODEG00000007284	ENSODEG00000019383	CHL1 (ENSODEG00000010169)	ENSODEG00000019392	CNTN3 (ENSODEG00000006512)	PDZRN3 (ENSODEG00000008618)	ENSODEG00000006984	ENSODEG00000006618 #22	ENSODEG00000007939	ENSODEG00000007497	ENSODEG00000019359	GXYLT2 (ENSODEG00000008178)	SHQ1 (ENSODEG00000009192)	RYBP (ENSODEG00000008699)	PROK2 (ENSODEG00000007144)	GPR27 (ENSODEG00000006497)	EIF4E3 (ENSODEG00000006191)	FOXP1 (ENSODEG00000007047)	MDFIC2 (ENSODEG00000006638)	MITF (ENSODEG00000009287)	ENSODEG00000006902	FRMD4B (ENSODEG00000005588)	LMOD3 (ENSODEG00000005409)
Long-tailed chinchilla	MODERN SPECIES	164	VWC2L (ENSCLAG00000004321) #7	ENSCLAG00000004744 #8	IKZF2 (ENSCLAG00000003632) #9	ERBB4 (ENSCLAG00000006948) #10	CPS1 (ENSCLAG00000003104) #11	LANCL1 (ENSCLAG00000005272) #12	MYL1 (ENSCLAG00000004096) #13	ACADL (ENSCLAG00000004230) #14	KANSL1L (ENSCLAG00000005749) #15	ENSCLAG00000003444 #16	UNC80 (ENSCLAG00000004587) #17	MAP2 (ENSCLAG00000003473) #18	ENSCLAG00000003083	PTH2R (ENSCLAG00000003358) #20	PIKFYVE (ENSCLAG00000005225) #21	IDH1 (ENSCLAG00000013186) #22	C2orf80 (ENSCLAG00000012137) #23	CRYGA (ENSCLAG00000013039) #25	ENSCLAG00000010298 ##25	CRYGC (ENSCLAG00000010342) #27	PLEKHM3 (ENSCLAG00000010825) #31	FZD5 (ENSCLAG00000008821) #32	ENSCLAG00000004502 ##33	ENSCLAG00000005432	METTL21A (ENSCLAG00000005572) #34	CREB1 (ENSCLAG00000005853) #35	KLF7 (ENSCLAG00000006083) #36	FASTKD2 (ENSCLAG00000007036)	MDH1B (ENSCLAG00000003385)	DYTN (ENSCLAG00000003705)	ADAM23 (ENSCLAG00000004674)
Guinea pig	MODERN SPECIES	13	BARD1 (ENSCPOG00000011499)	VWC2L (ENSCPOG00000013515) #7	IKZF2 (ENSCPOG00000013506) #9	ERBB4 (ENSCPOG00000011232) #10	ENSCPOG00000035740	CPS1 (ENSCPOG00000004146) #11	LANCL1 (ENSCPOG00000009439) #12	MYL1 (ENSCPOG00000009446) #13	ACADL (ENSCPOG00000009871) #14	KANSL1L (ENSCPOG00000001503) #15	ENSCPOG00000001502 #16	UNC80 (ENSCPOG00000008641) #17	ENSCPOG00000040677 #18	PTH2R (ENSCPOG00000027198) #20	PIKFYVE (ENSCPOG00000003863) #21	IDH1 (ENSCPOG00000013587) #22	C2orf80 (ENSCPOG00000015050) #23	CRYGA (ENSCPOG00000015047) #25	ENSCPOG00000022025 ##25	CRYGC (ENSCPOG00000000186) #27	PLEKHM3 (ENSCPOG00000004119) #31	FZD5 (ENSCPOG00000038146) #32	ENSCPOG00000035156 ##33	METTL21A (ENSCPOG00000034803) #34	CREB1 (ENSCPOG00000010778) #35	KLF7 (ENSCPOG00000009080) #36	FASTKD2 (ENSCPOG00000005624)	MDH1B (ENSCPOG00000005608)	ADAM23 (ENSCPOG00000005871)	EEF1B2 (ENSCPOG00000014496)	NDUFS1 (ENSCPOG00000005555)
Naked mole-rat female	DUPLICATION
Naked mole-rat female	MODERN SPECIES		ENSHGLG00000021037	ENSHGLG00000020868	ENSHGLG00000019647	ENSHGLG00000044369	ENSHGLG00000044639	ENSHGLG00000042688	ENSHGLG00000019680	ENSHGLG00000020888	ENSHGLG00000034476 #30	ENSHGLG00000041081	ENSHGLG00000018891	ENSHGLG00000032616	ENSHGLG00000035640	ENSHGLG00000045321	ENSHGLG00000042358	ENSHGLG00000000746 #22	ENSHGLG00000020121	ENSHGLG00000032106	ENSHGLG00000041333	ENSHGLG00000044343	ENSHGLG00000035030	ENSHGLG00000019642	ENSHGLG00000009764	ENSHGLG00000036657	ENSHGLG00000044549	ENSHGLG00000000510	ENSHGLG00000019985	ENSHGLG00000046356	ENSHGLG00000009234	ENSHGLG00000043662	ENSHGLG00000041448
Naked mole-rat female	MODERN SPECIES	23	EGR4 (ENSHGLG00000009021)	FBXO41 (ENSHGLG00000010102)	CCT7 (ENSHGLG00000011761)	PRADC1 (ENSHGLG00000015353)	SMYD5 (ENSHGLG00000015439)	RAB11FIP5 (ENSHGLG00000016021)	SFXN5 (ENSHGLG00000007851)	EMX1 (ENSHGLG00000036309)	SPR (ENSHGLG00000041182)	ENSHGLG00000006121	ENSHGLG00000040821	ENSHGLG00000032593	ENSHGLG00000039406	EXOC6B (ENSHGLG00000011639)	CYP26B1 (ENSHGLG00000016604)	ENSHGLG00000043383 #22	DYSF (ENSHGLG00000007256)	ZNF638 (ENSHGLG00000015789)	ENSHGLG00000050708	ENSHGLG00000039175	ENSHGLG00000015917	TEX261 (ENSHGLG00000047338)	ANKRD53 (ENSHGLG00000015981)	ATP6V1B1 (ENSHGLG00000034993)	VAX2 (ENSHGLG00000038768)	CD207 (ENSHGLG00000017278)	CLEC4F (ENSHGLG00000015223)	FIGLA (ENSHGLG00000015232)	ADD2 (ENSHGLG00000015246)	TGFA (ENSHGLG00000006181)	FAM136A (ENSHGLG00000043927)
Sciuridae	ANCESTRAL SPECIES	10	ENSGT00720000108792.B #7	ENSGT00940000155053 #8	ENSGT00940000157137 #9	ENSGT00940000154695 #10	ENSGT00940000157192 #11	ENSGT00530000063186.b.b #12	ENSGT01030000234570.d.a #13	ENSGT00940000157652 #14	ENSGT00530000063688.a #15	ENSGT00390000001447 #16	ENSGT00640000091496 #17	ENSGT00940000156597.b #18	ENSGT00940000163272.a.a #19	ENSGT00940000159094 #20	ENSGT00940000156307.b #21	ENSGT00390000012547.b #22	ENSGT00390000004840 #23	ENSGT00940000156190.h #25	ENSGT00940000159232.h.a #26	ENSGT00940000159232.h.b #27	ENSGT00940000158720.c.a	ENSGT00940000163272.a.b #28	ENSGT00940000159743 #31	ENSGT00940000162639 #32	ENSGT00940000154453.b.a.b ##33	ENSGT00940000157249 #34	ENSGT00940000155408 #35	ENSGT00940000155235 #36	ENSGT00940000161508	ENSGT01030000234607.A.b	ENSGT00530000063410.b
Marmotini	ANCESTRAL SPECIES	2	ENSGT00720000108792.B #7	ENSGT00940000155053 #8	ENSGT00940000157137 #9	ENSGT00940000154695 #10	ENSGT00940000157192 #11	ENSGT00530000063186.b.b #12	ENSGT01030000234570.d.a #13	ENSGT00940000157652 #14	ENSGT00530000063688.a #15	ENSGT00390000001447 #16	ENSGT00640000091496 #17	ENSGT00940000156597.b #18	ENSGT00940000163272.a.a #19	ENSGT00940000159094 #20	ENSGT00940000156307.b #21	ENSGT00390000012547.b #22	ENSGT00390000004840 #23	ENSGT00940000156190.h #25	ENSGT00940000159232.h.a #26	ENSGT00940000159232.h.b #27	ENSGT00940000163272.a.b #28	ENSGT00940000159743 #31	ENSGT00940000162639 #32	ENSGT00940000154453.b.a.b ##33	ENSGT00940000157249 #34	ENSGT00940000155408 #35	ENSGT00940000155235 #36	ENSGT00940000161508	ENSGT01030000234607.A.b	ENSGT00530000063410.b	ENSGT00940000162403
Alpin marmot	MODERN SPECIES	8	IKZF2 (ENSMMMG00000016182) #9	ENSMMMG00000016161	ENSMMMG00000016149	ENSMMMG00000016133 #10	CPS1 (ENSMMMG00000016097) #11	LANCL1 (ENSMMMG00000016069) #12	MYL1 (ENSMMMG00000016062) #13	ACADL (ENSMMMG00000015744) #14	KANSL1L (ENSMMMG00000015671) #15	ENSMMMG00000015656 #16	UNC80 (ENSMMMG00000015490) #17	MAP2 (ENSMMMG00000015268) #18	ENSMMMG00000015249 #19	PTH2R (ENSMMMG00000015216) #20	PIKFYVE (ENSMMMG00000015121) #21	IDH1 (ENSMMMG00000015109) #22	C2orf80 (ENSMMMG00000015100) #23	CRYGB (ENSMMMG00000015095) #26	CRYGC (ENSMMMG00000015089) #27	ENSMMMG00000015075 #28	PLEKHM3 (ENSMMMG00000015063) #31	ENSMMMG00000015050	CCNYL1 (ENSMMMG00000015025) ##33	METTL21A (ENSMMMG00000015010) #34	CREB1 (ENSMMMG00000014914) #35	KLF7 (ENSMMMG00000014897) #36	CPO (ENSMMMG00000014874)	FASTKD2 (ENSMMMG00000014857)	MDH1B (ENSMMMG00000014852)	ENSMMMG00000014844	DYTN (ENSMMMG00000014828)
Marmotini_b	ANCESTRAL SPECIES	274														ENSGT00940000159094 #20	ENSGT00940000156307.b #21	ENSGT00390000012547.b #22	ENSGT00390000004840 #23	ENSGT00940000156190.h #25	ENSGT00940000159232.h.a #26	ENSGT00940000158720.c.a
Squirrel	MODERN SPECIES	533														PTH2R (ENSSTOG00000012785) #20	PIKFYVE (ENSSTOG00000023868) #21	IDH1 (ENSSTOG00000033564) #22	C2orf80 (ENSSTOG00000008303) #23	CRYGA (ENSSTOG00000032300) #25	ENSSTOG00000003676 #26	ENSSTOG00000033162 #28
Eurasian red squirrel	MODERN SPECIES	12	MYL1 (ENSSVLG00005005436) #13	ENSSVLG00005005403	HNRNPA2B1 (ENSSVLG00005005387)	ACADL (ENSSVLG00005005352) #14	KANSL1L (ENSSVLG00005005286) #15	ENSSVLG00005005150 #16	ENSSVLG00005005077	UNC80 (ENSSVLG00005004348) #17	MAP2 (ENSSVLG00005003888) #18	ENSSVLG00005003797	ENSSVLG00005003780 #19	ENSSVLG00005003758	ENSSVLG00005003733	PTH2R (ENSSVLG00005003700) #20	PIKFYVE (ENSSVLG00005003549) #21	IDH1 (ENSSVLG00005003436) #22	C2orf80 (ENSSVLG00005003394) #23	CRYGA (ENSSVLG00005003355) #25	CRYGB (ENSSVLG00005003340) #26	CRYGC (ENSSVLG00005003325) #27	CRYGD (ENSSVLG00005003312)	ENSSVLG00005003302 #19	ENSSVLG00005003291	PLEKHM3 (ENSSVLG00005003272) #31	FZD5 (ENSSVLG00005003258) #32	ENSSVLG00005003181 ##33	METTL21A (ENSSVLG00005003134) #34	CREB1 (ENSSVLG00005003093) #35	KLF7 (ENSSVLG00005003049) #36	CPO (ENSSVLG00005003015)	FASTKD2 (ENSSVLG00005002985)
Lagomorpha	ANCESTRAL SPECIES	13	ENSGT00720000108792.B #7	ENSGT00940000155053 #8	ENSGT00940000157137 #9	ENSGT00390000002231.d.b	ENSGT00940000154695 #10	ENSGT00940000157192 #11	ENSGT00530000063186.b.b.b #12	ENSGT01030000234570.d.a #13	ENSGT00940000157652 #14	ENSGT00530000063688.a #15	ENSGT00390000001447 #16	ENSGT00640000091496 #17	ENSGT00940000156597.b #18	ENSGT00940000158720.c.b	ENSGT00940000156307.b #21	ENSGT00390000012547.b #22	ENSGT00390000004840 #23	ENSGT00940000156190.h #25	ENSGT00940000158720.d	ENSGT00940000158720.c.a	ENSGT00940000159743 #31	ENSGT00940000162639 #32	ENSGT00940000154453.b.a.a #33	ENSGT00940000157249 #34	ENSGT00940000155408 #35	ENSGT00940000155235 #36	ENSGT00940000161508	ENSGT01030000234607.A.b	ENSGT00530000063410.b	ENSGT00940000162403	ENSGT00940000158781
Rabbit	MODERN SPECIES	18	ENSOCUG00000034291	ENSOCUG00000036328	ERBB4 (ENSOCUG00000009790) #10	ENSOCUG00000021317	ENSOCUG00000034876	CPS1 (ENSOCUG00000017716) #11	LANCL1 (ENSOCUG00000017711) #12	MYL1 (ENSOCUG00000014182) #13	KANSL1L (ENSOCUG00000017001) #15	ENSOCUG00000016995 #16	UNC80 (ENSOCUG00000016966) #17	MAP2 (ENSOCUG00000005163) #18	ENSOCUG00000010967	ENSOCUG00000037560	PIKFYVE (ENSOCUG00000002676) #21	IDH1 (ENSOCUG00000002671) #22	ENSOCUG00000034990	C2orf80 (ENSOCUG00000010976) #23	CRYGA (ENSOCUG00000010973) #25	CRYGD (ENSOCUG00000029414)	PLEKHM3 (ENSOCUG00000015383) #31	ENSOCUG00000036167	FZD5 (ENSOCUG00000027916) #32	ENSOCUG00000015013 #33	ENSOCUG00000005431 #34	CREB1 (ENSOCUG00000005427) #35	ENSOCUG00000027419	KLF7 (ENSOCUG00000009813) #36	CPO (ENSOCUG00000009806)	ENSOCUG00000010515	MDH1B (ENSOCUG00000010506)
Pika	MODERN SPECIES	4228															PIKFYVE (ENSOPRG00000015296) #21	IDH1 (ENSOPRG00000015277) #22	C2orf80 (ENSOPRG00000015261) #23	CRYGA (ENSOPRG00000015254) #25	CRYGD (ENSOPRG00000015247)	PLEKHM3 (ENSOPRG00000015223) #31	ENSOPRG00000015213
Tree shrew	MODERN SPECIES	4678												ENSTBEG00000006254	ENSTBEG00000006024	ENSTBEG00000004425 #20	PIKFYVE (ENSTBEG00000001303) #21	IDH1 (ENSTBEG00000000608) #22	C2orf80 (ENSTBEG00000008565) #23	CRYGA (ENSTBEG00000008413) #25	ENSTBEG00000008279 ##25	CRYGC (ENSTBEG00000008131) #27	ENSTBEG00000007887 #28
Primates	ANCESTRAL SPECIES	13	ENSGT00720000108792.B #7	ENSGT00940000155053 #8	ENSGT00940000157137 #9	ENSGT00390000002231.d.b	ENSGT00940000154695 #10	ENSGT00940000157192 #11	ENSGT00530000063186.b.b #12	ENSGT01030000234570.d.a #13	ENSGT00940000157652 #14	ENSGT00530000063688.a #15	ENSGT00390000001447 #16	ENSGT00640000091496 #17	ENSGT00940000156597.b #18	ENSGT00940000159094 #20	ENSGT00940000156307.b #21	ENSGT00390000012547.b #22	ENSGT00390000004840 #23	ENSGT00940000156190.h #25	ENSGT00940000159232.h.a #26	ENSGT00940000159232.h.b #27	ENSGT00940000158720.c.a	ENSGT00940000158720.c.b	ENSGT00940000159743 #31	ENSGT00940000162639 #32	ENSGT00940000154453.b.a.b ##33	ENSGT00940000157249 #34	ENSGT00940000155408 #35	ENSGT00940000155235 #36	ENSGT00940000161508	ENSGT01030000234607.A.b	ENSGT00530000063410.b
Strepsirrhini	ANCESTRAL SPECIES	10	ENSGT00720000108792.B #7	ENSGT00940000155053 #8	ENSGT00940000157137 #9	ENSGT00390000002231.d.b	ENSGT00940000154695 #10	ENSGT00940000157192 #11	ENSGT00530000063186.b.b #12	ENSGT01030000234570.d.a #13	ENSGT00940000157652 #14	ENSGT00530000063688.a #15	ENSGT00390000001447 #16	ENSGT00640000091496 #17	ENSGT00940000156597.b #18	ENSGT00940000159094 #20	ENSGT00940000156307.b #21	ENSGT00390000012547.b #22	ENSGT00390000004840 #23	ENSGT00940000156190.h #25	ENSGT00940000156190.g ##25	ENSGT00940000159232.h.b #27	ENSGT00940000158720.c.a	ENSGT00940000158720.c.b	ENSGT00940000159743 #31	ENSGT00940000162639 #32	ENSGT00940000154453.b.b ##33	ENSGT00940000157249 #34	ENSGT00940000155408 #35	ENSGT00940000155235 #36	ENSGT00940000161508	ENSGT01030000234607.A.b	ENSGT00530000063410.b
Lemuriformes	ANCESTRAL SPECIES	5	ENSGT00720000108792.B #7	ENSGT00940000155053 #8	ENSGT00940000157137 #9	ENSGT00390000002231.d.b	ENSGT00940000154695 #10	ENSGT00940000157192 #11	ENSGT00530000063186.b.b #12	ENSGT01030000234570.d.a #13	ENSGT00940000157652 #14	ENSGT00530000063688.a #15	ENSGT00390000001447 #16	ENSGT00640000091496 #17	ENSGT00940000156597.b #18	ENSGT00940000159094 #20	ENSGT00940000156307.b #21	ENSGT00390000012547.b #22	ENSGT00390000004840 #23	ENSGT00940000156190.h #25	ENSGT00940000156190.g ##25	ENSGT00940000159232.h.b #27	ENSGT00940000158720.c.a	ENSGT00940000158720.c.b	ENSGT00940000159743 #31	ENSGT00940000162639 #32	ENSGT00940000154453.b.b ##33	ENSGT00940000157249 #34	ENSGT00940000155408 #35	ENSGT00940000155235 #36	ENSGT00940000161508	ENSGT01030000234607.A.b	ENSGT00530000063410.b
Lemuriformes_a	ANCESTRAL SPECIES	15	ENSGT00720000108792.B #7	ENSGT00940000155053 #8	ENSGT00940000157137 #9	ENSGT00390000002231.d.b	ENSGT00940000154695 #10	ENSGT00940000157192 #11	ENSGT00530000063186.b.b #12	ENSGT01030000234570.d.a #13	ENSGT00940000157652 #14	ENSGT00530000063688.a #15	ENSGT00390000001447 #16	ENSGT00640000091496 #17	ENSGT00940000156597.b #18	ENSGT00940000159094 #20	ENSGT00940000156307.b #21	ENSGT00390000012547.b #22	ENSGT00390000004840 #23	ENSGT00940000156190.h #25	ENSGT00940000156190.g ##25	ENSGT00940000159232.h.b #27	ENSGT00940000158720.c.a	ENSGT00940000158720.c.b	ENSGT00940000159743 #31	ENSGT00940000162639 #32	ENSGT00940000154453.b.b ##33	ENSGT00940000157249 #34	ENSGT00940000155408 #35	ENSGT00940000155235 #36	ENSGT00940000161508	ENSGT01030000234607.A.b	ENSGT00530000063410.b
Coquerels sifaka	MODERN SPECIES	847		ENSPCOG00000027398 #10	CPS1 (ENSPCOG00000021968) #11	ENSPCOG00000028314	LANCL1 (ENSPCOG00000008331) #12	MYL1 (ENSPCOG00000018716) #13	ENSPCOG00000026981	ACADL (ENSPCOG00000021470) #14	KANSL1L (ENSPCOG00000012542) #15	ENSPCOG00000017484 #16	UNC80 (ENSPCOG00000028748) #17	MAP2 (ENSPCOG00000020566) #18	PTH2R (ENSPCOG00000016298) #20	ENSPCOG00000014595	PIKFYVE (ENSPCOG00000021844) #21	IDH1 (ENSPCOG00000021282) #22	C2orf80 (ENSPCOG00000013784) #23	CRYGA (ENSPCOG00000028701) #25	ENSPCOG00000022043 ##25	CRYGC (ENSPCOG00000004093) #27	ENSPCOG00000017843	PLEKHM3 (ENSPCOG00000024736) #31	FZD5 (ENSPCOG00000011393) #32	ENSPCOG00000013286 ##33	METTL21A (ENSPCOG00000018442) #34	CREB1 (ENSPCOG00000021255) #35	KLF7 (ENSPCOG00000018231) #36	CPO (ENSPCOG00000028646)	FASTKD2 (ENSPCOG00000028714)	MDH1B (ENSPCOG00000017083)	DYTN (ENSPCOG00000020018)
Greater bamboo lemur	MODERN SPECIES	72											DTHD1 (ENSPSMG00000008279)	ARAP2 (ENSPSMG00000008166)	ENSPSMG00000008115	PTH2R (ENSPSMG00000008108) #20	PIKFYVE (ENSPSMG00000008024) #21	IDH1 (ENSPSMG00000007840) #22	C2orf80 (ENSPSMG00000007808) #23	CRYGA (ENSPSMG00000007753) #25	ENSPSMG00000007746 ##25	CRYGC (ENSPSMG00000007741) #27	CRYGD (ENSPSMG00000007725)	ENSPSMG00000007717	PLEKHM3 (ENSPSMG00000007709) #31	ENSPSMG00000007677	FZD5 (ENSPSMG00000007673) #32	ENSPSMG00000007649 ##33	METTL21A (ENSPSMG00000007593) #34	KLF7 (ENSPSMG00000007540) #36	CPO (ENSPSMG00000007503)	FASTKD2 (ENSPSMG00000007493)	MDH1B (ENSPSMG00000007477)
Mouse lemur	MODERN SPECIES	30	ATIC (ENSMICG00000014573)	IKZF2 (ENSMICG00000013862) #9	ENSMICG00000037305	ERBB4 (ENSMICG00000036699) #10	CPS1 (ENSMICG00000010886) #11	LANCL1 (ENSMICG00000033807) #12	MYL1 (ENSMICG00000010008) #13	ACADL (ENSMICG00000009991) #14	KANSL1L (ENSMICG00000009963) #15	ENSMICG00000009953 #16	UNC80 (ENSMICG00000009921) #17	MAP2 (ENSMICG00000009887) #18	ENSMICG00000045866	PTH2R (ENSMICG00000029711) #20	PIKFYVE (ENSMICG00000009805) #21	IDH1 (ENSMICG00000031243) #22	C2orf80 (ENSMICG00000009794) #23	CRYGA (ENSMICG00000045154) #25	ENSMICG00000033287 ##25	CRYGC (ENSMICG00000037493) #27	CRYGD (ENSMICG00000043795)	ENSMICG00000045926	PLEKHM3 (ENSMICG00000009771) #31	FZD5 (ENSMICG00000044967) #32	ENSMICG00000009744 ##33	METTL21A (ENSMICG00000009739) #34	CREB1 (ENSMICG00000009731) #35	KLF7 (ENSMICG00000037405) #36	CPO (ENSMICG00000015370)	FASTKD2 (ENSMICG00000026515)	MDH1B (ENSMICG00000009487)
Bushbaby	MODERN SPECIES	128	IKZF2 (ENSOGAG00000016680) #9	ENSOGAG00000010768 #10	ENSOGAG00000028178 #10	CPS1 (ENSOGAG00000005623) #11	LANCL1 (ENSOGAG00000005620) #12	MYL1 (ENSOGAG00000009848) #13	ENSOGAG00000027184	ACADL (ENSOGAG00000009844) #14	KANSL1L (ENSOGAG00000002780) #15	ENSOGAG00000002778 #16	UNC80 (ENSOGAG00000002771) #17	ENSOGAG00000025605 #18	ENSOGAG00000024989	PTH2R (ENSOGAG00000007106) #20	PIKFYVE (ENSOGAG00000014853) #21	IDH1 (ENSOGAG00000014848) #22	C2orf80 (ENSOGAG00000014847) #23	ENSOGAG00000014842 ##25	CRYGC (ENSOGAG00000014846) #27	CRYGD (ENSOGAG00000025720)	ENSOGAG00000031316	ENSOGAG00000031869	PLEKHM3 (ENSOGAG00000003678) #31	FZD5 (ENSOGAG00000003677) #32	ENSOGAG00000003673 ##33	METTL21A (ENSOGAG00000007128) #34	CREB1 (ENSOGAG00000007121) #35	KLF7 (ENSOGAG00000017014) #36	CPO (ENSOGAG00000017012)	FASTKD2 (ENSOGAG00000017008)	MDH1B (ENSOGAG00000017006)
Haplorrhini	ANCESTRAL SPECIES	10	ENSGT00720000108792.B #7	ENSGT00940000155053 #8	ENSGT00940000157137 #9	ENSGT00390000002231.d.b	ENSGT00940000154695 #10	ENSGT00940000157192 #11	ENSGT00530000063186.b.b #12	ENSGT01030000234570.d.a #13	ENSGT00940000157652 #14	ENSGT00530000063688.a #15	ENSGT00390000001447 #16	ENSGT00640000091496 #17	ENSGT00940000156597.b #18	ENSGT00940000159094 #20	ENSGT00940000156307.b #21	ENSGT00390000012547.b #22	ENSGT00390000004840 #23	ENSGT00940000156190.h #25	ENSGT00940000159232.h.a #26	ENSGT00940000159232.h.b #27	ENSGT00940000158720.c.a	ENSGT00940000158720.c.b	ENSGT00940000159743 #31	ENSGT00940000162639 #32	ENSGT00940000154453.b.a.b ##33	ENSGT00940000157249 #34	ENSGT00940000155408 #35	ENSGT00940000155235 #36	ENSGT00940000161508	ENSGT01030000234607.A.b	ENSGT00530000063410.b
Tarsier	MODERN SPECIES	5159																IDH1 (ENSTSYG00000006696) #22	C2orf80 (ENSTSYG00000012358) #23	CRYGA (ENSTSYG00000011561) #25	ENSTSYG00000032161 ##25	ENSTSYG00000012485 #27	PLEKHM3 (ENSTSYG00000027719) #31
Simiiformes	DUPLICATION
Simiiformes	ANCESTRAL SPECIES																	ENSGT00390000012547.b.a #22
Catarrhini	ANCESTRAL SPECIES																	ENSGT00390000012547.b.a #22
Hominoidea	ANCESTRAL SPECIES																	ENSGT00390000012547.b.a #22
Gibbon	MODERN SPECIES	11	XRCC4 (ENSNLEG00000013239)	TMEM167A (ENSNLEG00000013231)	ENSNLEG00000027406	ENSNLEG00000013214	RPS23 (ENSNLEG00000013203)	ATG10 (ENSNLEG00000013189)	SSBP2 (ENSNLEG00000013116)	ACOT12 (ENSNLEG00000013095)	ZCCHC9 (ENSNLEG00000029214)	CKMT2 (ENSNLEG00000013077)	RASGRF2 (ENSNLEG00000013038)	ENSNLEG00000030277	MSH3 (ENSNLEG00000012994)	ENSNLEG00000012989	FAM151B (ENSNLEG00000012975)	ENSNLEG00000034030 #22	ZFYVE16 (ENSNLEG00000012945)	ENSNLEG00000018598	ENSNLEG00000033746	SPZ1 (ENSNLEG00000018597)	ENSNLEG00000012943	SERINC5 (ENSNLEG00000012931)	THBS4 (ENSNLEG00000012916)	ENSNLEG00000012915	CMYA5 (ENSNLEG00000012895)	TENT2 (ENSNLEG00000027224)	HOMER1 (ENSNLEG00000012860)	JMY (ENSNLEG00000012852)	BHMT (ENSNLEG00000012840)	BHMT2 (ENSNLEG00000012819)	DMGDH (ENSNLEG00000012801)
Simiiformes	DUPLICATION
Simiiformes	ANCESTRAL SPECIES																	ENSGT00390000012547.b.b.a #22
Platyrrhini	ANCESTRAL SPECIES	9	ENSGT00720000108792.B #7	ENSGT00940000155053 #8	ENSGT00940000157137 #9	ENSGT00940000154695 #10	ENSGT00940000157192 #11	ENSGT00910000147691	ENSGT00530000063186.b.b #12	ENSGT01030000234570.d.a #13	ENSGT00940000157652 #14	ENSGT00530000063688.a #15	ENSGT00390000001447 #16	ENSGT00640000091496 #17	ENSGT00940000156597.b #18	ENSGT00940000159094 #20	ENSGT00940000156307.b #21	ENSGT00390000012547.b.b.a #22	ENSGT00390000004840 #23	ENSGT00940000156190.h #25	ENSGT00940000159232.h.a #26	ENSGT00940000159232.h.b #27	ENSGT00940000158720.c.a	ENSGT00940000158720.c.b	ENSGT00940000159743 #31	ENSGT00940000161191.B	ENSGT00910000146869	ENSGT00940000162639 #32	ENSGT00940000154453.b.a.b ##33	ENSGT00940000157249.d #34	ENSGT00940000157249.c #34	ENSGT00940000155408 #35	ENSGT00940000155235.g.a #36
Cebidae	ANCESTRAL SPECIES	11	ENSGT00940000157295	ENSGT00940000156532	ENSGT00720000108792.B #7	ENSGT00940000155053 #8	ENSGT00940000157137 #9	ENSGT00940000154695 #10	ENSGT00940000157192 #11	ENSGT00530000063186.b.b #12	ENSGT01030000234570.d.a #13	ENSGT00530000063688.a #15	ENSGT00390000001447 #16	ENSGT00640000091496 #17	ENSGT00940000156597.b #18	ENSGT00940000159094 #20	ENSGT00940000156307.b #21	ENSGT00390000012547.b.b.a #22	ENSGT00940000156150.f.a	ENSGT00390000004840 #23	ENSGT00940000156190.h #25	ENSGT00940000159232.h.a #26	ENSGT00940000159232.h.b #27	ENSGT00940000158720.c.a	ENSGT00940000158720.c.b	ENSGT00940000159743 #31	ENSGT00940000161191.B	ENSGT00910000146869	ENSGT00940000162639 #32	ENSGT00940000154453.b.a.b ##33	ENSGT00940000157249.c #34	ENSGT00940000155408 #35	ENSGT00940000155235.g.a #36
Cebidae_a	ANCESTRAL SPECIES	16	ENSGT00940000157295	ENSGT00940000156532	ENSGT00720000108792.B #7	ENSGT00940000155053 #8	ENSGT00940000157137 #9	ENSGT00940000154695 #10	ENSGT00940000157192 #11	ENSGT00530000063186.b.b #12	ENSGT01030000234570.d.a #13	ENSGT00530000063688.a #15	ENSGT00390000001447 #16	ENSGT00640000091496 #17	ENSGT00940000156597.b #18	ENSGT00940000159094 #20	ENSGT00940000156307.b #21	ENSGT00390000012547.b.b.a #22	ENSGT00940000156150.f.a	ENSGT00390000004840 #23	ENSGT00940000156190.h #25	ENSGT00940000159232.h.a #26	ENSGT00940000159232.h.b #27	ENSGT00940000158720.c.a	ENSGT00940000158720.c.b	ENSGT00940000159743 #31	ENSGT00940000161191.B	ENSGT00910000146869	ENSGT00940000162639 #32	ENSGT00940000154453.b.a.b ##33	ENSGT00940000157249.c #34	ENSGT00940000155408 #35	ENSGT00940000155235.g.a #36
Capuchin	MODERN SPECIES	191					CPS1 (ENSCCAG00000027521) #11	ENSCCAG00000034724	LANCL1 (ENSCCAG00000028325) #12	MYL1 (ENSCCAG00000034680) #13	ENSCCAG00000036882	KANSL1L (ENSCCAG00000037601) #15	ENSCCAG00000033448 #16	UNC80 (ENSCCAG00000025606) #17	MAP2 (ENSCCAG00000038055) #18	PTH2R (ENSCCAG00000036728) #20	PIKFYVE (ENSCCAG00000026780) #21	ENSCCAG00000000173 #22	ENSCCAG00000035005	C2orf80 (ENSCCAG00000021479) #23	CRYGA (ENSCCAG00000028117) #25	ENSCCAG00000028787 ##25	CRYGC (ENSCCAG00000033759) #27	CRYGD (ENSCCAG00000034553)	ENSCCAG00000037061	PLEKHM3 (ENSCCAG00000019609) #31	ENSCCAG00000030735	FZD5 (ENSCCAG00000011362) #32	CCNYL1 (ENSCCAG00000037301) ##33	METTL21A (ENSCCAG00000027925) #34	CREB1 (ENSCCAG00000024700) #35	ENSCCAG00000033506 #36	CPO (ENSCCAG00000029100)
Bolivian squirrel monkey	MODERN SPECIES	56	BARD1 (ENSSBOG00000024817)	VWC2L (ENSSBOG00000027487) #7	SPAG16 (ENSSBOG00000028079) #8	IKZF2 (ENSSBOG00000020703) #9	ERBB4 (ENSSBOG00000030062) #10	CPS1 (ENSSBOG00000001070) #11	LANCL1 (ENSSBOG00000020922) #12	MYL1 (ENSSBOG00000033791) #13	KANSL1L (ENSSBOG00000033776) #15	ENSSBOG00000019098 #16	UNC80 (ENSSBOG00000036149) #17	MAP2 (ENSSBOG00000036242) #18	ENSSBOG00000025322	PTH2R (ENSSBOG00000022880) #20	PIKFYVE (ENSSBOG00000031867) #21	ENSSBOG00000025738 #22	C2orf80 (ENSSBOG00000020763) #23	CRYGA (ENSSBOG00000026091) #25	CRYGB (ENSSBOG00000023184) #26	CRYGC (ENSSBOG00000026600) #27	ENSSBOG00000020159	PLEKHM3 (ENSSBOG00000027559) #31	ENSSBOG00000031757	CCNYL1 (ENSSBOG00000034567) ##33	ENSSBOG00000033378 #34	CREB1 (ENSSBOG00000034085) #35	ENSSBOG00000018885	ENSSBOG00000027628 #36	CPO (ENSSBOG00000030310)	FASTKD2 (ENSSBOG00000029513)	MDH1B (ENSSBOG00000029880)
Marmoset	MODERN SPECIES	18	ENSCJAG00000010822 #16	UNC80 (ENSCJAG00000010773) #17	MAP2 (ENSCJAG00000010689) #18	ENSCJAG00000010676	ENSCJAG00000082683	ENSCJAG00000075881	ENSCJAG00000071851	ENSCJAG00000002713	ENSCJAG00000041460	ENSCJAG00000079485	ENSCJAG00000060037	ENSCJAG00000038285	PTH2R (ENSCJAG00000002754) #20	PIKFYVE (ENSCJAG00000002759) #21	ENSCJAG00000075032	ENSCJAG00000002828 #22	ENSCJAG00000022999	ENSCJAG00000002855	ENSCJAG00000077681	ENSCJAG00000080445	ENSCJAG00000073032	PLEKHM3 (ENSCJAG00000002896) #31	FZD5 (ENSCJAG00000022490) #32	CCNYL1 (ENSCJAG00000002901) ##33	METTL21A (ENSCJAG00000006072) #34	ENSCJAG00000086572	CREB1 (ENSCJAG00000006039) #35	ENSCJAG00000006023 #36	CPO (ENSCJAG00000005991)	ENSCJAG00000073541	FASTKD2 (ENSCJAG00000005971)
Mas night monkey	MODERN SPECIES	357	SPAG16 (ENSANAG00000021194) #8	IKZF2 (ENSANAG00000020083) #9	ERBB4 (ENSANAG00000034026) #10	CPS1 (ENSANAG00000036815) #11	ENSANAG00000036535	ENSANAG00000033281 #12	MYL1 (ENSANAG00000032098) #13	ACADL (ENSANAG00000034362) #14	KANSL1L (ENSANAG00000028662) #15	ENSANAG00000021491 #16	UNC80 (ENSANAG00000022890) #17	MAP2 (ENSANAG00000031569) #18	ENSANAG00000036032	PTH2R (ENSANAG00000026937) #20	PIKFYVE (ENSANAG00000034773) #21	ENSANAG00000029087 #22	ENSANAG00000033767	C2orf80 (ENSANAG00000021366) #23	CRYGA (ENSANAG00000020661) #25	CRYGB (ENSANAG00000001941) #26	CRYGC (ENSANAG00000035987) #27	CRYGD (ENSANAG00000036850)	ENSANAG00000009967	PLEKHM3 (ENSANAG00000028108) #31	FZD5 (ENSANAG00000014539) #32	CCNYL1 (ENSANAG00000020995) ##33	ENSANAG00000020586 #34	CREB1 (ENSANAG00000025888) #35	KLF7 (ENSANAG00000036279) #36	CPO (ENSANAG00000023194)	FASTKD2 (ENSANAG00000034550)
Catarrhini	ANCESTRAL SPECIES	5	ENSGT00390000001263	ENSGT00940000163315	ENSGT00940000156849	ENSGT00390000012955.v	ENSGT00950000182848.c.b.a.a	ENSGT00940000163455	ENSGT00940000163681	ENSGT00940000157040	ENSGT00390000003564	ENSGT00390000016974	ENSGT00940000154703.e.a	ENSGT00940000156920	ENSGT00940000158768	ENSGT00390000004886	ENSGT00940000154843.F	ENSGT00390000012547.b.b.a #22	ENSGT00940000157075	ENSGT00390000001805	ENSGT00400000022103.a	ENSGT00940000157533	ENSGT00390000018605	ENSGT01050000244939.a.a.a	ENSGT00530000063853.a.a.b	ENSGT00940000158071	ENSGT00940000157289.a	ENSGT00940000163747	ENSGT00390000014167	ENSGT00940000155106	ENSGT00910000147523	ENSGT00940000155105	ENSGT00390000008360
Hominoidea	ANCESTRAL SPECIES	4	ENSGT00940000154772	ENSGT00390000001263	ENSGT00940000163315	ENSGT00940000156849	ENSGT00390000012955.v	ENSGT00950000182848.c.b.a.a	ENSGT00940000163455	ENSGT00940000157040	ENSGT00390000003564	ENSGT00390000016974	ENSGT00940000154703.e.a	ENSGT00940000156920	ENSGT00940000158768	ENSGT00390000004886	ENSGT00940000154843.F	ENSGT00390000012547.b.b.a #22	ENSGT00940000157075	ENSGT00390000001805	ENSGT00400000022103.a	ENSGT00940000157533	ENSGT00390000018605	ENSGT01050000244939.a.a.a	ENSGT00530000063853.a.a.b	ENSGT00940000158071	ENSGT00940000157289.a	ENSGT00940000161627.a.a.a.b.b.b.b.b.b	ENSGT00910000146968	ENSGT00940000169445	ENSGT00940000163747	ENSGT00390000014167	ENSGT00940000155106
Hominidae	ANCESTRAL SPECIES	5	ENSGT00940000154772	ENSGT00390000001263	ENSGT00940000163315	ENSGT00940000156849	ENSGT00390000012955.v	ENSGT00950000182848.c.b.a.a	ENSGT00940000163455	ENSGT00940000157040	ENSGT00390000003564	ENSGT00390000016974	ENSGT00940000154703.e.a	ENSGT00940000156920	ENSGT00940000158768	ENSGT00390000004886	ENSGT00940000154843.F	ENSGT00390000012547.b.b.a #22	ENSGT00940000157075	ENSGT00390000008610.a.b.a.a.a.s.a.a	ENSGT00390000001805	ENSGT00400000022103.a	ENSGT00940000157533	ENSGT00390000018605	ENSGT01050000244939.a.a.a	ENSGT00530000063853.a.a.b	ENSGT00940000158071	ENSGT00940000157289.a	ENSGT00940000161627.a.a.a.b.b.b.b.b.b	ENSGT00910000146968	ENSGT00940000169445	ENSGT00940000163747	ENSGT00390000014167
Homo/Pan/Gorilla group	ANCESTRAL SPECIES	4	ENSGT00940000154772	ENSGT00390000001263	ENSGT00940000163315	ENSGT00940000156849	ENSGT00390000012955.v	ENSGT00950000182848.c.b.a.a	ENSGT00940000163455	ENSGT00940000157040	ENSGT00390000003564	ENSGT00390000016974	ENSGT00940000154703.e.a	ENSGT00940000156920	ENSGT00940000158768.p	ENSGT00390000004886	ENSGT00940000154843.F	ENSGT00390000012547.b.b.a #22	ENSGT00940000157075	ENSGT00390000008610.a.b.a.a.a.s.a.a.a	ENSGT00390000001805	ENSGT00400000022103.a	ENSGT00940000157533	ENSGT00940000153288.a.a.h.d	ENSGT00390000018605	ENSGT01050000244939.a.a.a	ENSGT00530000063853.a.a.b	ENSGT00940000158071	ENSGT00940000157289.a	ENSGT00940000161627.a.a.a.b.b.b.b.b.b	ENSGT00910000146968	ENSGT00940000169445	ENSGT00940000163747
Homo/Pan group	ANCESTRAL SPECIES	5	ENSGT00940000163914.f.a	ENSGT00940000154772	ENSGT00390000001263	ENSGT00940000163315	ENSGT00940000156849	ENSGT00950000182848.c.b.a.a	ENSGT00940000163455	ENSGT00940000157040	ENSGT00390000003564	ENSGT00390000016974	ENSGT00940000154703.e.a	ENSGT00940000156920	ENSGT00940000158768.p	ENSGT00390000004886	ENSGT00940000154843.F	ENSGT00390000012547.b.b.a #22	ENSGT00940000157075	ENSGT00390000008610.a.b.a.a.a.s.a.a.a	ENSGT00390000001805	ENSGT00400000022103.a	ENSGT00940000157533	ENSGT00940000153288.a.a.h.d	ENSGT00390000018605	ENSGT01050000244939.a.a.a	ENSGT00530000063853.a.a.b	ENSGT00940000158071	ENSGT00940000157289.a	ENSGT00940000161627.a.a.a.b.b.b.b.b.b	ENSGT00910000146968	ENSGT00940000169445	ENSGT00940000163747
Pan	ANCESTRAL SPECIES	29	ENSGT00940000163914.f.a	ENSGT00940000154772	ENSGT00390000001263	ENSGT00940000163315	ENSGT00940000156849	ENSGT00950000182848.c.b.a.a	ENSGT00940000163455	ENSGT00940000157040	ENSGT00390000003564	ENSGT00390000016974	ENSGT00940000154703.e.a	ENSGT00940000156920	ENSGT00940000158768.p	ENSGT00390000004886	ENSGT00940000154843.F	ENSGT00390000012547.b.b.a #22	ENSGT00940000157075	ENSGT00390000008610.a.b.a.a.a.s.a.a.a	ENSGT00390000001805	ENSGT00400000022103.a	ENSGT00940000157533	ENSGT00940000153288.a.a.h.d	ENSGT00390000018605	ENSGT01050000244939.a.a.a	ENSGT00530000063853.a.a.b	ENSGT00390000008859.b.d.k.a.b.a	ENSGT00940000158071	ENSGT00940000161627.a.a.a.b.b.b.b.b.b	ENSGT00910000146968	ENSGT00940000169445	ENSGT00940000163747
Bonobo	MODERN SPECIES	19	ENSPPAG00000029483	TMEM14C (ENSPPAG00000038469)	PAK1IP1 (ENSPPAG00000027804)	C6orf52 (ENSPPAG00000028663)	GCNT2 (ENSPPAG00000041367)	ENSPPAG00000043300	ENSPPAG00000042636	SLC35B3 (ENSPPAG00000039344)	EEF1E1 (ENSPPAG00000035045)	BLOC1S5 (ENSPPAG00000027769)	ENSPPAG00000043373	TXNDC5 (ENSPPAG00000038633)	BMP6 (ENSPPAG00000002110)	SNRNP48 (ENSPPAG00000032873)	DSP (ENSPPAG00000031494)	ENSPPAG00000041327 #22	RIOK1 (ENSPPAG00000016349)	ENSPPAG00000039573	CAGE1 (ENSPPAG00000033711)	SSR1 (ENSPPAG00000031246)	RREB1 (ENSPPAG00000037017)	ENSPPAG00000041064	LY86 (ENSPPAG00000032346)	F13A1 (ENSPPAG00000002226)	ENSPPAG00000040029	ENSPPAG00000037456	ENSPPAG00000038177	FARS2 (ENSPPAG00000040551)	ENSPPAG00000028919	ENSPPAG00000009976	ENSPPAG00000035824
Chimpanzee	MODERN SPECIES	19	TMEM14B (ENSPTRG00000017721)	TMEM14C (ENSPTRG00000017720)	PAK1IP1 (ENSPTRG00000017719)	C6H6orf52 (ENSPTRG00000017718)	GCNT2 (ENSPTRG00000017717)	TFAP2A (ENSPTRG00000017714)	ENSPTRG00000017711	SLC35B3 (ENSPTRG00000017710)	EEF1E1 (ENSPTRG00000017709)	BLOC1S5 (ENSPTRG00000048795)	ENSPTRG00000044939	TXNDC5 (ENSPTRG00000017708)	BMP6 (ENSPTRG00000017705)	SNRNP48 (ENSPTRG00000017703)	DSP (ENSPTRG00000017702)	ENSPTRG00000050048 #22	RIOK1 (ENSPTRG00000017700)	ENSPTRG00000047374	CAGE1 (ENSPTRG00000017699)	SSR1 (ENSPTRG00000017698)	RREB1 (ENSPTRG00000017697)	ENSPTRG00000046122	LY86 (ENSPTRG00000017696)	F13A1 (ENSPTRG00000017694)	NRN1 (ENSPTRG00000017693)	ENSPTRG00000044064	ENSPTRG00000049807	FARS2 (ENSPTRG00000017692)	LYRM4 (ENSPTRG00000017691)	ENSPTRG00000049487	ENSPTRG00000045800
Gorilla	MODERN SPECIES	19	TMEM14C (ENSGGOG00000016952)	PAK1IP1 (ENSGGOG00000013026)	C6orf52 (ENSGGOG00000013899)	ENSGGOG00000004765	ENSGGOG00000013682	TFAP2A (ENSGGOG00000007542)	ENSGGOG00000006522	SLC35B3 (ENSGGOG00000011511)	ENSGGOG00000009591	BLOC1S5 (ENSGGOG00000040405)	ENSGGOG00000026610	TXNDC5 (ENSGGOG00000000906)	BMP6 (ENSGGOG00000000904)	SNRNP48 (ENSGGOG00000013220)	DSP (ENSGGOG00000013213)	ENSGGOG00000040077 #22	RIOK1 (ENSGGOG00000011037)	ENSGGOG00000022405	ENSGGOG00000038504	CAGE1 (ENSGGOG00000011030)	SSR1 (ENSGGOG00000004566)	RREB1 (ENSGGOG00000004561)	ENSGGOG00000022862	LY86 (ENSGGOG00000024223)	F13A1 (ENSGGOG00000001196)	ENSGGOG00000005223	ENSGGOG00000024909	ENSGGOG00000039665	FARS2 (ENSGGOG00000011842)	ENSGGOG00000041108	ENSGGOG00000034970
Gibbon	MODERN SPECIES	23	TMEM14C (ENSNLEG00000000564)	PAK1IP1 (ENSNLEG00000000550)	C6orf52 (ENSNLEG00000000544)	ENSNLEG00000000512	ENSNLEG00000028993	TFAP2A (ENSNLEG00000000503)	ENSNLEG00000000485	SLC35B3 (ENSNLEG00000030754)	EEF1E1 (ENSNLEG00000035609)	BLOC1S5 (ENSNLEG00000029882)	ENSNLEG00000027984	TXNDC5 (ENSNLEG00000011683)	ENSNLEG00000011672	SNRNP48 (ENSNLEG00000011667)	DSP (ENSNLEG00000011664)	ENSNLEG00000029272 #22	ENSNLEG00000011621	ENSNLEG00000027842	ENSNLEG00000027260	ENSNLEG00000032024	CAGE1 (ENSNLEG00000011592)	SSR1 (ENSNLEG00000011572)	RREB1 (ENSNLEG00000011554)	LY86 (ENSNLEG00000011547)	F13A1 (ENSNLEG00000011509)	NRN1 (ENSNLEG00000011502)	FARS2 (ENSNLEG00000011479)	ENSNLEG00000030412	ENSNLEG00000011472	ENSNLEG00000028872	PPP1R3G (ENSNLEG00000018873)
Cercopithecidae	ANCESTRAL SPECIES	4	ENSGT00390000001263	ENSGT00940000163315	ENSGT00940000156849	ENSGT00390000012955.v	ENSGT00950000182848.c.b.a.a	ENSGT00940000163455	ENSGT00940000163681	ENSGT00940000157040	ENSGT00390000003564	ENSGT00390000016974	ENSGT00940000154703.e.a	ENSGT00940000156920	ENSGT00940000158768	ENSGT00390000004886	ENSGT00940000154843.F	ENSGT00390000012547.b.b.a #22	ENSGT00940000157075	ENSGT00390000008610.a.b.a.a.a.t	ENSGT00390000001805	ENSGT00400000022103.a	ENSGT00940000157533	ENSGT00390000018605	ENSGT01050000244939.a.a.a	ENSGT00530000063853.a.a.b	ENSGT00940000158071	ENSGT00940000157289.a	ENSGT00940000163747	ENSGT00390000014167	ENSGT00940000155106	ENSGT00910000147523	ENSGT00940000155105
Rhinopithecus	ANCESTRAL SPECIES	271								ENSGT00940000157040	ENSGT00390000003564.j	ENSGT00390000016974	ENSGT00940000154703.e.a	ENSGT00940000156920	ENSGT00940000158768	ENSGT00390000004886	ENSGT00940000154843.F	ENSGT00390000012547.b.b.a #22	ENSGT00940000157075	ENSGT00390000001805	ENSGT00400000022103.a	ENSGT00940000157533	ENSGT00390000018605	ENSGT01050000244939.a.a.a	ENSGT00530000063853.a.a.b	ENSGT00940000158071	ENSGT00940000157289.a	ENSGT00940000161627.a.a.a.b.b.b.a.a.a.b	ENSGT00910000146968	ENSGT00950000183142.a.b.a.b.p
Black snub-nosed monkey	MODERN SPECIES	623								SLC35B3 (ENSRBIG00000031147)	ENSRBIG00000033472	BLOC1S5 (ENSRBIG00000037450)	ENSRBIG00000036820	TXNDC5 (ENSRBIG00000028339)	BMP6 (ENSRBIG00000030865)	SNRNP48 (ENSRBIG00000043856)	DSP (ENSRBIG00000040544)	ENSRBIG00000004417 #22	RIOK1 (ENSRBIG00000036685)	ENSRBIG00000033623	CAGE1 (ENSRBIG00000033392)	SSR1 (ENSRBIG00000028076)	TCF21 (ENSRBIG00000032927)	EYA4 (ENSRBIG00000023700)	RPS12 (ENSRBIG00000029886)	SLC18B1 (ENSRBIG00000006237)	VNN2 (ENSRBIG00000036583)	ENSRBIG00000044983	VNN1 (ENSRBIG00000036270)	TAAR2 (ENSRBIG00000038395)	TAAR5 (ENSRBIG00000003009)	TAAR6 (ENSRBIG00000033492)	TAAR9 (ENSRBIG00000040722)
Golden snub-nosed monkey	MODERN SPECIES	2293								SLC35B3 (ENSRROG00000042188)	ENSRROG00000034778	BLOC1S5 (ENSRROG00000043572)	ENSRROG00000043599	TXNDC5 (ENSRROG00000032967)	BMP6 (ENSRROG00000032319)	SNRNP48 (ENSRROG00000043229)	DSP (ENSRROG00000038096)	ENSRROG00000039689 #22	RIOK1 (ENSRROG00000036611)	CAGE1 (ENSRROG00000044698)	ENSRROG00000037141	SSR1 (ENSRROG00000035450)	RREB1 (ENSRROG00000039603)	LY86 (ENSRROG00000002665)
Cercopithecinae	ANCESTRAL SPECIES	6	ENSGT00390000001263	ENSGT00940000163315	ENSGT00940000156849	ENSGT00390000012955.v	ENSGT00950000182848.c.b.a.a	ENSGT00940000163455	ENSGT00940000163681	ENSGT00940000157040	ENSGT00390000003564	ENSGT00390000016974	ENSGT00940000154703.e.a	ENSGT00940000156920	ENSGT00940000158768	ENSGT00390000004886	ENSGT00940000154843.F	ENSGT00390000012547.b.b.a #22	ENSGT00940000157075	ENSGT00390000008610.a.b.a.a.a.t	ENSGT00390000001805	ENSGT00400000022103.a	ENSGT00940000157533	ENSGT00390000018605	ENSGT01050000244939.a.a.a	ENSGT00530000063853.a.a.b	ENSGT00940000158071	ENSGT00940000157289.a	ENSGT00940000163747	ENSGT00390000014167	ENSGT00940000155106	ENSGT00910000147523	ENSGT00940000155105
Cercopithecinae_a	ANCESTRAL SPECIES	6	ENSGT00390000001263	ENSGT00910000146788	ENSGT00940000163315	ENSGT00940000156849	ENSGT00390000012955.v	ENSGT00950000182848.c.b.a.a	ENSGT00940000163455	ENSGT00940000157040	ENSGT00390000003564	ENSGT00390000016974	ENSGT00940000154703.e.a	ENSGT00940000156920	ENSGT00940000158768	ENSGT00390000004886	ENSGT00940000154843.F	ENSGT00390000012547.b.b.a #22	ENSGT00940000157075	ENSGT00390000008610.a.b.a.a.a.t.i	ENSGT00390000001805	ENSGT00390000008610.a.b.a.a.a.t.h.a	ENSGT00400000022103.a	ENSGT00940000157533	ENSGT00390000018605	ENSGT01050000244939.a.a.a	ENSGT00530000063853.a.a.b	ENSGT00940000158071	ENSGT00940000157289.a	ENSGT00940000161627.a.a.a.b.b.b.a.a.a.b.a	ENSGT00910000146968	ENSGT00950000183142.a.b.a.b.p	ENSGT00910000147352
Cercopithecinae_b	ANCESTRAL SPECIES	37	ENSGT00390000001263	ENSGT00910000146788	ENSGT00940000163315	ENSGT00940000156849	ENSGT00390000012955.v	ENSGT00950000182848.c.b.a.a	ENSGT00940000163455	ENSGT00940000157040	ENSGT00390000003564	ENSGT00390000016974	ENSGT00940000154703.e.a	ENSGT00940000156920	ENSGT00940000158768	ENSGT00390000004886	ENSGT00940000154843.F	ENSGT00390000012547.b.b.a #22	ENSGT00940000157075	ENSGT00390000008610.a.b.a.a.a.t.h.a	ENSGT00390000001805	ENSGT00400000022103.a	ENSGT00940000157533	ENSGT00390000018605	ENSGT01050000244939.a.a.a	ENSGT00530000063853.a.a.b	ENSGT00940000158071	ENSGT00940000161627.a.a.a.b.b.b.a.a.a.b.a	ENSGT00910000146968	ENSGT00950000183142.a.b.a.b.p	ENSGT00910000147352	ENSGT00390000014167	ENSGT00940000155106
Cercopithecinae_d	ANCESTRAL SPECIES	41	ENSGT00390000001263	ENSGT00910000146788	ENSGT00940000163315	ENSGT00940000156849	ENSGT00390000012955.v	ENSGT00950000182848.c.b.a.a	ENSGT00940000163455	ENSGT00940000157040	ENSGT00390000003564	ENSGT00390000016974	ENSGT00940000154703.e.a	ENSGT00940000156920	ENSGT00940000158768	ENSGT00390000004886	ENSGT00940000154843.F	ENSGT00390000012547.b.b.a #22	ENSGT00940000157075	ENSGT00390000008610.a.b.a.a.a.t.h.a	ENSGT00390000001805	ENSGT00400000022103.a	ENSGT00940000157533	ENSGT00390000018605	ENSGT01050000244939.a.a.a	ENSGT00530000063853.a.a.b	ENSGT00940000158071	ENSGT00940000161627.a.a.a.b.b.b.a.a.a.b.a	ENSGT00910000146968	ENSGT00950000183142.a.b.a.b.p	ENSGT00910000147352	ENSGT00390000014167	ENSGT00940000155106
Drill	MODERN SPECIES	1017	ENSMLEG00000043808	C6orf52 (ENSMLEG00000029992)	GCNT2 (ENSMLEG00000041262)	ENSMLEG00000043784	TFAP2A (ENSMLEG00000042408)	ENSMLEG00000032653	SLC35B3 (ENSMLEG00000037638)	EEF1E1 (ENSMLEG00000032511)	BLOC1S5 (ENSMLEG00000033993)	ENSMLEG00000039944	TXNDC5 (ENSMLEG00000041843)	ENSMLEG00000014123	BMP6 (ENSMLEG00000042815)	SNRNP48 (ENSMLEG00000034004)	DSP (ENSMLEG00000041552)	ENSMLEG00000041390 #22	RIOK1 (ENSMLEG00000026327)	ENSMLEG00000032606	CAGE1 (ENSMLEG00000044083)	SSR1 (ENSMLEG00000038033)	RREB1 (ENSMLEG00000040965)
Sooty mangabey	MODERN SPECIES	385	C6orf52 (ENSCATG00000033015)	GCNT2 (ENSCATG00000045362)	ENSCATG00000026811	TFAP2A (ENSCATG00000040906)	ENSCATG00000031464	ENSCATG00000005265	ENSCATG00000036873	SLC35B3 (ENSCATG00000029745)	EEF1E1 (ENSCATG00000038260)	BLOC1S5 (ENSCATG00000043344)	ENSCATG00000039499	TXNDC5 (ENSCATG00000031520)	BMP6 (ENSCATG00000040011)	SNRNP48 (ENSCATG00000033947)	DSP (ENSCATG00000034897)	ENSCATG00000013581 #22	RIOK1 (ENSCATG00000001548)	ENSCATG00000037875	CAGE1 (ENSCATG00000030215)	SSR1 (ENSCATG00000037180)	RREB1 (ENSCATG00000043662)	LY86 (ENSCATG00000038100)	F13A1 (ENSCATG00000043896)	NRN1 (ENSCATG00000043786)	FARS2 (ENSCATG00000038588)	ENSCATG00000035234	ENSCATG00000043081	ENSCATG00000042252	RPP40 (ENSCATG00000038787)	CDYL (ENSCATG00000038624)
Macaca	ANCESTRAL SPECIES	23	ENSGT00910000146788	ENSGT00940000163315	ENSGT00940000156849	ENSGT00390000012955.v	ENSGT00950000182848.c.b.a.a	ENSGT00940000163455	ENSGT00390000004803.h	ENSGT00940000157040	ENSGT00390000003564	ENSGT00390000016974	ENSGT00940000154703.e.a	ENSGT00940000156920	ENSGT00940000158768	ENSGT00390000004886	ENSGT00940000154843.F	ENSGT00390000012547.b.b.a #22	ENSGT00940000157075	ENSGT00390000008610.a.b.a.a.a.t.i	ENSGT00390000001805	ENSGT00400000022103.a	ENSGT00940000157533	ENSGT00390000018605	ENSGT01050000244939.a.a.a	ENSGT00530000063853.a.a.b	ENSGT00940000158071	ENSGT00940000157289.a	ENSGT00940000161627.a.a.a.b.b.b.a.a.a.b.a	ENSGT00910000146968	ENSGT00950000183142.a.b.a.b.p	ENSGT00910000147352	ENSGT00940000163747
Pig-tailed macaque	MODERN SPECIES	136	ENSMNEG00000037658	GCNT2 (ENSMNEG00000036260)	ENSMNEG00000033728	TFAP2A (ENSMNEG00000040025)	ENSMNEG00000044460	ENSMNEG00000037743	SLC35B3 (ENSMNEG00000005122)	EEF1E1 (ENSMNEG00000035493)	BLOC1S5 (ENSMNEG00000002839)	ENSMNEG00000039687	ENSMNEG00000037840	TXNDC5 (ENSMNEG00000032269)	BMP6 (ENSMNEG00000035190)	SNRNP48 (ENSMNEG00000042269)	DSP (ENSMNEG00000040416)	ENSMNEG00000028700 #22	RIOK1 (ENSMNEG00000034396)	ENSMNEG00000034466	CAGE1 (ENSMNEG00000033634)	SSR1 (ENSMNEG00000039105)	RREB1 (ENSMNEG00000038556)	LY86 (ENSMNEG00000045408)	F13A1 (ENSMNEG00000040730)	NRN1 (ENSMNEG00000041129)	FARS2 (ENSMNEG00000044897)	ENSMNEG00000042081	ENSMNEG00000041203	ENSMNEG00000045067	ENSMNEG00000003878	RPP40 (ENSMNEG00000041986)	CDYL (ENSMNEG00000038983)
Simiiformes	ANCESTRAL SPECIES	15	ENSGT00940000155053 #8	ENSGT00940000157137 #9	ENSGT00390000002231.d.b	ENSGT00940000154695 #10	ENSGT00940000157192 #11	ENSGT00910000147691	ENSGT00530000063186.b.b #12	ENSGT01030000234570.d.a #13	ENSGT00940000157652 #14	ENSGT00530000063688.a #15	ENSGT00390000001447 #16	ENSGT00640000091496 #17	ENSGT00940000156597.b #18	ENSGT00940000159094 #20	ENSGT00940000156307.b #21	ENSGT00390000012547.b.b.b #22	ENSGT00390000004840 #23	ENSGT00940000156190.h #25	ENSGT00940000159232.h.a #26	ENSGT00940000159232.h.b #27	ENSGT00940000158720.c.a	ENSGT00940000158720.c.b	ENSGT00940000159743 #31	ENSGT00940000161191.B	ENSGT00910000146869	ENSGT00940000162639 #32	ENSGT00940000154453.b.a.b ##33	ENSGT00940000157249 #34	ENSGT00940000155408 #35	ENSGT00940000155235.g.b #36	ENSGT00940000161508
Catarrhini	ANCESTRAL SPECIES	16	ENSGT00390000002231.d.b	ENSGT00940000154695 #10	ENSGT00940000157192 #11	ENSGT00910000147691	ENSGT00530000063186.b.b #12	ENSGT01030000234570.d.a #13	ENSGT00910000147420	ENSGT00940000157652 #14	ENSGT00530000063688.a #15	ENSGT00390000001447.p.b #16	ENSGT00640000091496 #17	ENSGT00940000156597.b #18	ENSGT00390000015257.s.a	ENSGT00940000159094 #20	ENSGT00940000156307.b #21	ENSGT00390000012547.b.b.b #22	ENSGT00390000004840 #23	ENSGT00940000156190.h #25	ENSGT00940000159232.h.a #26	ENSGT00940000159232.h.b #27	ENSGT00940000158720.c.a	ENSGT00940000158720.c.b	ENSGT00940000159743 #31	ENSGT00910000147537	ENSGT00910000146869	ENSGT00940000162639 #32	ENSGT00940000154453.b.a.b.a ##33	ENSGT00940000157249 #34	ENSGT00940000155408 #35	ENSGT00940000155235.g.b #36	ENSGT00940000161508
Cercopithecidae	ANCESTRAL SPECIES	13	ENSGT00940000154695 #10	ENSGT00940000157192 #11	ENSGT00910000147691	ENSGT00530000063186.b.b #12	ENSGT01030000234570.d.a #13	ENSGT00910000147420	ENSGT00940000157652 #14	ENSGT00530000063688.a #15	ENSGT00390000001447.q #16	ENSGT00390000001447.p.b #16	ENSGT00640000091496 #17	ENSGT00940000156597.b #18	ENSGT00390000015257.s.a	ENSGT00940000159094 #20	ENSGT00940000156307.b #21	ENSGT00390000012547.b.b.b #22	ENSGT00390000004840 #23	ENSGT00940000156190.h #25	ENSGT00940000159232.h.a #26	ENSGT00940000159232.h.b #27	ENSGT00940000158720.c.a	ENSGT00940000158720.c.b	ENSGT00940000159743 #31	ENSGT00910000146869	ENSGT00910000147537	ENSGT00940000162639 #32	ENSGT00940000154453.b.a.b.a ##33	ENSGT00940000157249 #34	ENSGT00940000155408 #35	ENSGT00940000155235.g.b #36	ENSGT00940000161508
Cercopithecinae	ANCESTRAL SPECIES	11	ENSGT00940000155053 #8	ENSGT00940000157137 #9	ENSGT00390000002231.d.b	ENSGT00940000154695 #10	ENSGT00940000157192 #11	ENSGT00530000063186.b.b #12	ENSGT01030000234570.d.a #13	ENSGT00940000157652 #14	ENSGT00530000063688.a #15	ENSGT00390000001447.q #16	ENSGT00640000091496 #17	ENSGT00940000156597.b #18	ENSGT00390000015257.s.a	ENSGT00940000159094 #20	ENSGT00940000156307.b #21	ENSGT00390000012547.b.b.b #22	ENSGT00390000004840 #23	ENSGT00940000156190.h #25	ENSGT00940000159232.h.a #26	ENSGT00940000159232.h.b #27	ENSGT00940000158720.c.a	ENSGT00940000158720.c.b	ENSGT00940000159743 #31	ENSGT00910000147537	ENSGT00910000146869	ENSGT00940000162639 #32	ENSGT00940000154453.b.a.b.a ##33	ENSGT00940000157249 #34	ENSGT00940000155408 #35	ENSGT00940000155235.g.b #36	ENSGT00940000161508
Cercopithecinae_a	ANCESTRAL SPECIES	16	ENSGT00940000157137 #9	ENSGT00390000002231.d.b	ENSGT00940000154695 #10	ENSGT00940000157192 #11	ENSGT00530000063186.b.b #12	ENSGT01030000234570.d.a #13	ENSGT00940000157652 #14	ENSGT00530000063688.a #15	ENSGT00910000148013	ENSGT00390000001447.p.b #16	ENSGT00640000091496 #17	ENSGT00940000156597.b #18	ENSGT00390000015257.s.a	ENSGT00940000159094 #20	ENSGT00940000156307.b #21	ENSGT00390000012547.b.b.b #22	ENSGT00390000004840 #23	ENSGT00940000156190.h #25	ENSGT00940000159232.h.a #26	ENSGT00940000159232.h.b #27	ENSGT00940000158720.c.a	ENSGT00940000158720.c.b	ENSGT00940000159743 #31	ENSGT00910000147537	ENSGT00910000146869	ENSGT00940000162639 #32	ENSGT00940000154453.b.a.b.a ##33	ENSGT00940000157249 #34	ENSGT00940000155408 #35	ENSGT00940000155235.g.b #36	ENSGT00940000161508
Macaca	ANCESTRAL SPECIES	15	ENSGT00940000155053 #8	ENSGT00940000157137 #9	ENSGT00940000154695 #10	ENSGT00940000157192 #11	ENSGT00530000063186.b.b #12	ENSGT01030000234570.d.a #13	ENSGT00940000157652 #14	ENSGT00530000063688.a #15	ENSGT00910000148013	ENSGT00390000001447.p.b #16	ENSGT00640000091496 #17	ENSGT00940000156597.b #18	ENSGT00950000183099.u.a.e.i.a	ENSGT00940000159094 #20	ENSGT00940000156307.b #21	ENSGT00390000012547.b.b.b #22	ENSGT00390000004840 #23	ENSGT00940000156190.h #25	ENSGT00940000159232.h.a #26	ENSGT00940000159232.h.b #27	ENSGT00940000158720.c.a	ENSGT00940000158720.c.b	ENSGT00940000159743 #31	ENSGT00910000147537	ENSGT00910000146869	ENSGT00940000162639 #32	ENSGT00940000154453.b.a.b.a ##33	ENSGT00940000157249 #34	ENSGT00940000155408 #35	ENSGT00940000155235.g.b #36	ENSGT00940000161508
Macaca_a	ANCESTRAL SPECIES	17	ENSGT00940000155053 #8	ENSGT00940000157137 #9	ENSGT00390000002231.d.b	ENSGT00940000154695 #10	ENSGT00940000157192 #11	ENSGT00530000063186.b.b #12	ENSGT01030000234570.d.a #13	ENSGT00530000063688.a #15	ENSGT00390000001447.q #16	ENSGT00640000091496 #17	ENSGT00940000156597.b #18	ENSGT00950000183099.u.a.e.i.a	ENSGT00960000191503.d	ENSGT00940000159094 #20	ENSGT00940000156307.b #21	ENSGT00390000012547.b.b.b #22	ENSGT00390000004840 #23	ENSGT00940000156190.h #25	ENSGT00940000159232.h.a #26	ENSGT00940000159232.h.b #27	ENSGT00940000158720.c.a	ENSGT00940000158720.c.b	ENSGT00940000159743 #31	ENSGT00910000147537	ENSGT00940000162639 #32	ENSGT00940000154453.b.a.b.a ##33	ENSGT00940000157249 #34	ENSGT00940000155408 #35	ENSGT00940000155235.g.b #36	ENSGT00940000161508	ENSGT01030000234607.A.b
Crab-eating macaque	MODERN SPECIES	3	IKZF2 (ENSMFAG00000049387) #9	ENSMFAG00000059453	ENSMFAG00000047331	ERBB4 (ENSMFAG00000042352) #10	CPS1 (ENSMFAG00000044079) #11	LANCL1 (ENSMFAG00000041765) #12	MYL1 (ENSMFAG00000031549) #13	KANSL1L (ENSMFAG00000031878) #15	ENSMFAG00000001492 #16	UNC80 (ENSMFAG00000038823) #17	MAP2 (ENSMFAG00000037191) #18	ENSMFAG00000040051	ENSMFAG00000049469	PTH2R (ENSMFAG00000000697) #20	PIKFYVE (ENSMFAG00000041669) #21	IDH1 (ENSMFAG00000037839) #22	C2orf80 (ENSMFAG00000003892) #23	CRYGB (ENSMFAG00000052040) #26	CRYGC (ENSMFAG00000047676) #27	CRYGD (ENSMFAG00000052291)	ENSMFAG00000065752	ENSMFAG00000064501	PLEKHM3 (ENSMFAG00000033450) #31	ENSMFAG00000009381	CCNYL1 (ENSMFAG00000001361) ##33	CREB1 (ENSMFAG00000039629) #35	ENSMFAG00000041805 #34	KLF7 (ENSMFAG00000039083) #36	CPO (ENSMFAG00000062349)	FASTKD2 (ENSMFAG00000033471)	ENSMFAG00000049460
Rhesus	MODERN SPECIES	3	IKZF2 (ENSMMUG00000000381) #9	ENSMMUG00000061342	ENSMMUG00000058114	ERBB4 (ENSMMUG00000001674) #10	CPS1 (ENSMMUG00000010508) #11	LANCL1 (ENSMMUG00000054937) #12	MYL1 (ENSMMUG00000010519) #13	KANSL1L (ENSMMUG00000010515) #15	RPE (ENSMMUG00000010513) #16	UNC80 (ENSMMUG00000002809) #17	MAP2 (ENSMMUG00000018741) #18	ENSMMUG00000004941	ENSMMUG00000051180	PTH2R (ENSMMUG00000005295) #20	PIKFYVE (ENSMMUG00000017524) #21	IDH1 (ENSMMUG00000016077) #22	C12H2orf80 (ENSMMUG00000014299) #23	CRYGA (ENSMMUG00000049611) #25	CRYGB (ENSMMUG00000010871) #26	CRYGC (ENSMMUG00000056938) #27	CRYGD (ENSMMUG00000052742)	ENSMMUG00000045625	ENSMMUG00000059636	ENSMMUG00000060339	PLEKHM3 (ENSMMUG00000008113) #31	FZD5 (ENSMMUG00000057651) #32	CCNYL1 (ENSMMUG00000020211) ##33	METTL21A (ENSMMUG00000022602) #34	CREB1 (ENSMMUG00000022601) #35	KLF7 (ENSMMUG00000000190) #36	ENSMMUG00000051957 #36
Pig-tailed macaque	MODERN SPECIES	409														PTH2R (ENSMNEG00000006024) #20	PIKFYVE (ENSMNEG00000040785) #21	IDH1 (ENSMNEG00000031883) #22	C2orf80 (ENSMNEG00000043879) #23	CRYGA (ENSMNEG00000041411) #25	ENSMNEG00000035721 ##25	CRYGC (ENSMNEG00000026158) #27	CRYGD (ENSMNEG00000029162)	ENSMNEG00000037076	PLEKHM3 (ENSMNEG00000044217) #31	ENSMNEG00000044317	ENSMNEG00000028169	ENSMNEG00000045370	FZD5 (ENSMNEG00000024425) #32	CCNYL1 (ENSMNEG00000035559) ##33	METTL21A (ENSMNEG00000034465) #34	CREB1 (ENSMNEG00000030274) #35	KLF7 (ENSMNEG00000027996) #36
Cercopithecinae_b	ANCESTRAL SPECIES	10	ENSGT00940000157137 #9	ENSGT00940000154695 #10	ENSGT00940000157192 #11	ENSGT00530000063186.b.b #12	ENSGT00510000046986.n.a.d.b	ENSGT01030000234570.d.a #13	ENSGT00940000157652 #14	ENSGT00530000063688.a #15	ENSGT00910000148013	ENSGT00390000001447.p.b #16	ENSGT00640000091496 #17	ENSGT00940000156597.b #18	ENSGT00390000015257.s.a	ENSGT00940000159094 #20	ENSGT00940000156307.b #21	ENSGT00390000012547.b.b.b #22	ENSGT00390000004840 #23	ENSGT00940000156190.h #25	ENSGT00940000159232.h.a #26	ENSGT00940000159232.h.b #27	ENSGT00940000158720.c.a	ENSGT00940000158720.c.b	ENSGT00940000159743 #31	ENSGT00910000146869	ENSGT00940000162639 #32	ENSGT00940000154453.b.a.b.a ##33	ENSGT00940000157249 #34	ENSGT00940000155408 #35	ENSGT00940000155235.g.b #36	ENSGT00940000161508	ENSGT01030000234607.A.b
Cercopithecinae_d	ANCESTRAL SPECIES		ENSGT00910000147161	ENSGT00910000147691	ENSGT00940000157192 #11	ENSGT00530000063186.b.b #12	ENSGT00510000046986.n.a.d.b	ENSGT01030000234570.d.a #13	ENSGT00940000157652 #14	ENSGT00530000063688.a #15	ENSGT00910000148013	ENSGT00390000001447.p.b #16	ENSGT00640000091496 #17	ENSGT00940000156597.b #18	ENSGT00390000015257.s.a	ENSGT00940000159094 #20	ENSGT00940000156307.b #21	ENSGT00390000012547.b.b.b #22	ENSGT00390000004840 #23	ENSGT00940000156190.h #25	ENSGT00940000159232.h.a #26	ENSGT00940000159232.h.b #27	ENSGT00940000158720.c.a	ENSGT00940000158720.c.b	ENSGT00940000159743 #31	ENSGT00910000146869	ENSGT00940000162639 #32	ENSGT00940000154453.b.a.b.a ##33	ENSGT00940000157249 #34	ENSGT00940000155408 #35	ENSGT00940000155235.g.b #36	ENSGT00940000161508	ENSGT01030000234607.A.b
Drill	MODERN SPECIES	1118														PTH2R (ENSMLEG00000037579) #20	PIKFYVE (ENSMLEG00000029250) #21	IDH1 (ENSMLEG00000013259) #22	C2orf80 (ENSMLEG00000028047) #23	CRYGA (ENSMLEG00000041636) #25	CRYGB (ENSMLEG00000028601) #26	CRYGC (ENSMLEG00000044264) #27	CRYGD (ENSMLEG00000027151)	ENSMLEG00000040026	PLEKHM3 (ENSMLEG00000029115) #31	ENSMLEG00000039137	ENSMLEG00000039230	CCNYL1 (ENSMLEG00000041254) ##33	METTL21A (ENSMLEG00000028195) #34	CREB1 (ENSMLEG00000033904) #35	KLF7 (ENSMLEG00000003421) #36	CPO (ENSMLEG00000034929)	FASTKD2 (ENSMLEG00000030777)
Sooty mangabey	MODERN SPECIES	570	ERBB4 (ENSCATG00000043272) #10	ENSCATG00000003304	CPS1 (ENSCATG00000033305) #11	LANCL1 (ENSCATG00000038900) #12	ENSCATG00000031803	MYL1 (ENSCATG00000044624) #13	ACADL (ENSCATG00000041550) #14	ENSCATG00000006457	KANSL1L (ENSCATG00000043995) #15	ENSCATG00000043868 #16	UNC80 (ENSCATG00000041534) #17	MAP2 (ENSCATG00000042916) #18	ENSCATG00000043850	PTH2R (ENSCATG00000037593) #20	PIKFYVE (ENSCATG00000033498) #21	IDH1 (ENSCATG00000042214) #22	C2orf80 (ENSCATG00000038326) #23	CRYGA (ENSCATG00000043962) #25	CRYGB (ENSCATG00000038743) #26	CRYGC (ENSCATG00000036220) #27	CRYGD (ENSCATG00000037915)	ENSCATG00000036671	PLEKHM3 (ENSCATG00000036070) #31	ENSCATG00000036323	FZD5 (ENSCATG00000004406) #32	CCNYL1 (ENSCATG00000037115) ##33	METTL21A (ENSCATG00000041598) #34	CREB1 (ENSCATG00000037133) #35	KLF7 (ENSCATG00000041615) #36	CPO (ENSCATG00000043384)	FASTKD2 (ENSCATG00000038647)
Olive baboon	MODERN SPECIES	1	ENSPANG00000048059	ERBB4 (ENSPANG00000020599) #10	CPS1 (ENSPANG00000008478) #11	LANCL1 (ENSPANG00000043351) #12	ENSPANG00000050010	MYL1 (ENSPANG00000005181) #13	KANSL1L (ENSPANG00000000746) #15	ENSPANG00000005182 #16	UNC80 (ENSPANG00000024759) #17	MAP2 (ENSPANG00000019944) #18	ENSPANG00000051073	ENSPANG00000039642	PTH2R (ENSPANG00000002436) #20	PIKFYVE (ENSPANG00000010442) #21	C2orf80 (ENSPANG00000033159) #23	IDH1 (ENSPANG00000005239) #22	CRYGB (ENSPANG00000049951) #26	CRYGC (ENSPANG00000051332) #27	CRYGD (ENSPANG00000039491)	ENSPANG00000040505	ENSPANG00000041891	PLEKHM3 (ENSPANG00000020994) #31	ENSPANG00000049745	ENSPANG00000050051	FZD5 (ENSPANG00000004676) #32	CCNYL1 (ENSPANG00000011206) ##33	ENSPANG00000050559	ENSPANG00000047863	METTL21A (ENSPANG00000024440) #34	CREB1 (ENSPANG00000009083) #35	KLF7 (ENSPANG00000005240) #36
Vervet Monkey	MODERN SPECIES	1	IKZF2 (ENSCSAG00000009405) #9	ENSCSAG00000009457 #10	ENSCSAG00000009490 #10	CPS1 (ENSCSAG00000009759) #11	LANCL1 (ENSCSAG00000009844) #12	MYL1 (ENSCSAG00000009850) #13	ACADL (ENSCSAG00000009898) #14	KANSL1L (ENSCSAG00000009924) #15	ENSCSAG00000009931 #16	UNC80 (ENSCSAG00000009965) #17	MAP2 (ENSCSAG00000009974) #18	ENSCSAG00000009983	ENSCSAG00000018772	PTH2R (ENSCSAG00000010012) #20	PIKFYVE (ENSCSAG00000010033) #21	IDH1 (ENSCSAG00000010039) #22	C2orf80 (ENSCSAG00000010044) #23	CRYGA (ENSCSAG00000010050) #25	CRYGB (ENSCSAG00000010058) #26	CRYGC (ENSCSAG00000010063) #27	CRYGD (ENSCSAG00000010066)	PLEKHM3 (ENSCSAG00000010071) #31	FZD5 (ENSCSAG00000018771) #32	CCNYL1 (ENSCSAG00000010093) ##33	METTL21A (ENSCSAG00000010107) #34	CREB1 (ENSCSAG00000010111) #35	KLF7 (ENSCSAG00000010117) #36	CPO (ENSCSAG00000010143)	FASTKD2 (ENSCSAG00000010158)	MDH1B (ENSCSAG00000010163)	DYTN (ENSCSAG00000010181)
Rhinopithecus	ANCESTRAL SPECIES	73			ENSGT00940000157192 #11	ENSGT00910000147691	ENSGT00530000063186.b.b #12	ENSGT01030000234570.d.a.g #13	ENSGT00910000147420	ENSGT00940000157652 #14	ENSGT00530000063688.a #15	ENSGT00390000001447.p.b #16	ENSGT00640000091496 #17	ENSGT00940000156597.b #18	ENSGT00390000015257.s.a	ENSGT00940000159094 #20	ENSGT00940000156307.b #21	ENSGT00390000012547.b.b.b #22	ENSGT00390000004840 #23	ENSGT00940000156190.h #25	ENSGT00940000159232.h.a #26	ENSGT00940000159232.h.b #27	ENSGT00940000158720.c.a	ENSGT00940000158720.c.b	ENSGT00940000159743 #31	ENSGT00910000146869	ENSGT00940000162639 #32	ENSGT00940000154453.b.a.b.a ##33	ENSGT00940000157249 #34	ENSGT00940000155408 #35	ENSGT00940000155235.g.b #36	ENSGT00940000161508	ENSGT01030000234607.A.b
Black snub-nosed monkey	MODERN SPECIES	957				ENSRBIG00000040006	CPS1 (ENSRBIG00000034628) #11	LANCL1 (ENSRBIG00000041559) #12	MYL1 (ENSRBIG00000027883) #13	ACADL (ENSRBIG00000028829) #14	KANSL1L (ENSRBIG00000028308) #15	ENSRBIG00000004921 #16	UNC80 (ENSRBIG00000042926) #17	MAP2 (ENSRBIG00000028156) #18	ENSRBIG00000029420	PTH2R (ENSRBIG00000033118) #20	PIKFYVE (ENSRBIG00000044045) #21	IDH1 (ENSRBIG00000029262) #22	C2orf80 (ENSRBIG00000035852) #23	CRYGA (ENSRBIG00000043634) #25	CRYGB (ENSRBIG00000006661) #26	CRYGC (ENSRBIG00000035767) #27	CRYGD (ENSRBIG00000036767)	ENSRBIG00000038783	PLEKHM3 (ENSRBIG00000026856) #31	ENSRBIG00000031476	FZD5 (ENSRBIG00000022385) #32	CCNYL1 (ENSRBIG00000041496) ##33	METTL21A (ENSRBIG00000038997) #34	CREB1 (ENSRBIG00000040701) #35
Golden snub-nosed monkey	MODERN SPECIES	2001														PTH2R (ENSRROG00000038416) #20	PIKFYVE (ENSRROG00000044523) #21	IDH1 (ENSRROG00000033347) #22	C2orf80 (ENSRROG00000045563) #23	CRYGA (ENSRROG00000010431) #25	CRYGB (ENSRROG00000028311) #26	CRYGC (ENSRROG00000030163) #27	CRYGD (ENSRROG00000035794)	ENSRROG00000042574
Hominoidea	ANCESTRAL SPECIES	15	ENSGT00940000155053 #8	ENSGT00940000157137 #9	ENSGT00390000002231.d.b	ENSGT00940000154695 #10	ENSGT00940000157192 #11	ENSGT00530000063186.b.b #12	ENSGT01030000234570.d.a #13	ENSGT00910000147420	ENSGT00940000157652 #14	ENSGT00530000063688.a #15	ENSGT00390000001447.p.b #16	ENSGT00640000091496 #17	ENSGT00940000156597.b #18	ENSGT00940000159094 #20	ENSGT00940000156307.b #21	ENSGT00390000012547.b.b.b #22	ENSGT00390000004840 #23	ENSGT00940000156190.h #25	ENSGT00940000159232.h.a #26	ENSGT00940000159232.h.b #27	ENSGT00940000158720.c.a	ENSGT00940000158720.c.b	ENSGT00940000159743 #31	ENSGT00910000147537	ENSGT00910000146869	ENSGT00940000162639 #32	ENSGT00940000154453.b.a.b.a ##33	ENSGT00940000157249 #34	ENSGT00940000155408 #35	ENSGT00940000155235.g.b #36	ENSGT00940000161508
Hominidae	ANCESTRAL SPECIES	17	ENSGT00940000155053 #8	ENSGT00940000157137 #9	ENSGT00390000002231.d.b	ENSGT00940000154695 #10	ENSGT00940000157192 #11	ENSGT00530000063186.b.b #12	ENSGT01030000234570.d.a #13	ENSGT00910000147420	ENSGT00940000157652 #14	ENSGT00530000063688.a #15	ENSGT00390000001447.q #16	ENSGT00640000091496 #17	ENSGT00940000156597.b #18	ENSGT00940000159094 #20	ENSGT00940000156307.b #21	ENSGT00390000012547.b.b.b #22	ENSGT00390000004840 #23	ENSGT00940000156190.h #25	ENSGT00940000159232.h.a #26	ENSGT00940000159232.h.b #27	ENSGT00940000158720.c.a	ENSGT00940000158720.c.b	ENSGT00940000159743 #31	ENSGT00910000146869	ENSGT00910000147537	ENSGT00940000162639 #32	ENSGT00940000154453.b.a.b.a ##33	ENSGT00940000157249 #34	ENSGT00940000155408 #35	ENSGT00940000155235.g.b #36	ENSGT00940000161508
Homo/Pan/Gorilla group	ANCESTRAL SPECIES	14	ENSGT00940000157137 #9	ENSGT00910000148020	ENSGT00940000154695 #10	ENSGT00940000157192 #11	ENSGT00530000063186.b.b #12	ENSGT01030000234570.d.a #13	ENSGT00910000147420	ENSGT00940000157652 #14	ENSGT00530000063688.a #15	ENSGT00390000001447.q #16	ENSGT00390000001447.p.b #16	ENSGT00640000091496 #17	ENSGT00940000156597.b #18	ENSGT00940000159094 #20	ENSGT00940000156307.b #21	ENSGT00390000012547.b.b.b #22	ENSGT00390000004840 #23	ENSGT00940000156190.h #25	ENSGT00940000159232.h.a #26	ENSGT00940000159232.h.b #27	ENSGT00940000158720.c.a	ENSGT00940000158720.c.b	ENSGT00940000159743 #31	ENSGT00910000146869	ENSGT00910000147537	ENSGT00940000162639 #32	ENSGT00940000154453.b.a.b.a ##33	ENSGT00950000182985.b.b.i.b.d.a	ENSGT00940000157249 #34	ENSGT00940000155408 #35	ENSGT00940000155235.g.b #36
Homo/Pan group	ANCESTRAL SPECIES	13	ENSGT00940000155053 #8	ENSGT00940000157137 #9	ENSGT00910000148020	ENSGT00940000154695 #10	ENSGT00940000157192 #11	ENSGT00530000063186.b.b #12	ENSGT01030000234570.d.a #13	ENSGT00910000147420	ENSGT00940000157652 #14	ENSGT00530000063688.a #15	ENSGT00390000001447.p.b #16	ENSGT00640000091496 #17	ENSGT00940000156597.b #18	ENSGT00940000159094 #20	ENSGT00940000156307.b #21	ENSGT00390000012547.b.b.b #22	ENSGT00390000004840 #23	ENSGT00940000156190.h #25	ENSGT00940000159232.h.a #26	ENSGT00940000159232.h.b #27	ENSGT00940000158720.c.a	ENSGT00940000158720.c.b	ENSGT00940000159743 #31	ENSGT00910000146869	ENSGT00910000147537	ENSGT00940000162639 #32	ENSGT00940000154453.b.a.b.a ##33	ENSGT00950000182985.b.b.i.b.d.a	ENSGT00940000157249 #34	ENSGT00940000155408 #35	ENSGT00940000155235.g.b #36
Pan	ANCESTRAL SPECIES	12	ENSGT00940000155053 #8	ENSGT00940000157137 #9	ENSGT00910000148020	ENSGT00940000154695 #10	ENSGT00940000157192 #11	ENSGT00530000063186.b.b #12	ENSGT01030000234570.d.a #13	ENSGT00910000147420	ENSGT00940000157652 #14	ENSGT00530000063688.a #15	ENSGT00390000001447.p.b #16	ENSGT00640000091496 #17	ENSGT00940000156597.b #18	ENSGT00940000159094 #20	ENSGT00940000156307.b #21	ENSGT00390000012547.b.b.b #22	ENSGT00390000004840 #23	ENSGT00940000156190.h #25	ENSGT00940000159232.h.a #26	ENSGT00940000159232.h.b #27	ENSGT00940000158720.c.a	ENSGT00940000158720.c.b	ENSGT00940000159743 #31	ENSGT00910000146869	ENSGT00910000147537	ENSGT00940000162639 #32	ENSGT00940000154453.b.a.b.a ##33	ENSGT00950000182985.b.b.i.b.d.a	ENSGT00940000157249 #34	ENSGT00940000155408 #35	ENSGT00940000155235.g.b #36
Bonobo	MODERN SPECIES	15	SPAG16 (ENSPPAG00000043643) #8	IKZF2 (ENSPPAG00000041873) #9	ENSPPAG00000023325	ERBB4 (ENSPPAG00000041527) #10	CPS1 (ENSPPAG00000037514) #11	LANCL1 (ENSPPAG00000039753) #12	MYL1 (ENSPPAG00000032667) #13	ENSPPAG00000009402	ACADL (ENSPPAG00000035916) #14	KANSL1L (ENSPPAG00000038917) #15	ENSPPAG00000034521 #16	UNC80 (ENSPPAG00000038207) #17	MAP2 (ENSPPAG00000042145) #18	PTH2R (ENSPPAG00000000087) #20	PIKFYVE (ENSPPAG00000038724) #21	IDH1 (ENSPPAG00000039215) #22	C2orf80 (ENSPPAG00000035033) #23	CRYGA (ENSPPAG00000038408) #25	CRYGB (ENSPPAG00000019473) #26	CRYGC (ENSPPAG00000029445) #27	CRYGD (ENSPPAG00000030489)	ENSPPAG00000019104	PLEKHM3 (ENSPPAG00000028938) #31	ENSPPAG00000034737	ENSPPAG00000004988	FZD5 (ENSPPAG00000000897) #32	CCNYL1 (ENSPPAG00000034051) ##33	ENSPPAG00000029502	ENSPPAG00000010296	METTL21A (ENSPPAG00000041715) #34	CREB1 (ENSPPAG00000042817) #35
Chimpanzee	MODERN SPECIES	15	IKZF2 (ENSPTRG00000048797) #9	ENSPTRG00000050921	ERBB4 (ENSPTRG00000012883) #10	CPS1 (ENSPTRG00000012881) #11	LANCL1 (ENSPTRG00000012880) #12	MYL1 (ENSPTRG00000012879) #13	ENSPTRG00000044780	ACADL (ENSPTRG00000012876) #14	ENSPTRG00000043540	KANSL1L (ENSPTRG00000012875) #15	ENSPTRG00000048818 #16	UNC80 (ENSPTRG00000012873) #17	MAP2 (ENSPTRG00000012869) #18	PTH2R (ENSPTRG00000012868) #20	PIKFYVE (ENSPTRG00000012866) #21	IDH1 (ENSPTRG00000012865) #22	C2orf80 (ENSPTRG00000012863) #23	CRYGA (ENSPTRG00000012862) #25	CRYGB (ENSPTRG00000012861) #26	CRYGC (ENSPTRG00000012859) #27	CRYGD (ENSPTRG00000012858)	ENSPTRG00000049376	PLEKHM3 (ENSPTRG00000012857) #31	ENSPTRG00000043594	ENSPTRG00000049925	FZD5 (ENSPTRG00000012855) #32	CCNYL1 (ENSPTRG00000012853) ##33	ENSPTRG00000045370	METTL21A (ENSPTRG00000012852) #34	CREB1 (ENSPTRG00000043959) #35	KLF7 (ENSPTRG00000012850) #36
Human	MODERN SPECIES	11	BARD1 (ENSG00000138376)	VWC2L (ENSG00000174453) #7	SPAG16 (ENSG00000144451) #8	IKZF2 (ENSG00000030419) #9	ERBB4 (ENSG00000178568) #10	CPS1 (ENSG00000021826) #11	LANCL1 (ENSG00000115365) #12	MYL1 (ENSG00000168530) #13	ACADL (ENSG00000115361) #14	KANSL1L (ENSG00000144445) #15	RPE (ENSG00000197713) #16	UNC80 (ENSG00000144406) #17	MAP2 (ENSG00000078018) #18	PTH2R (ENSG00000144407) #20	PIKFYVE (ENSG00000115020) #21	IDH1 (ENSG00000138413) #22	C2orf80 (ENSG00000188674) #23	CRYGA (ENSG00000168582) #25	CRYGB (ENSG00000182187) #26	CRYGC (ENSG00000163254) #27	CRYGD (ENSG00000118231)	PLEKHM3 (ENSG00000178385) #31	FZD5 (ENSG00000163251) #32	CCNYL1 (ENSG00000163249) ##33	METTL21A (ENSG00000144401) #34	CREB1 (ENSG00000118260) #35	KLF7 (ENSG00000118263) #36	CPO (ENSG00000144410)	FASTKD2 (ENSG00000118246)	MDH1B (ENSG00000138400)	DYTN (ENSG00000232125)
Gorilla	MODERN SPECIES	15	IKZF2 (ENSGGOG00000011301) #9	ENSGGOG00000039432	ERBB4 (ENSGGOG00000014309) #10	CPS1 (ENSGGOG00000028226) #11	LANCL1 (ENSGGOG00000041237) #12	MYL1 (ENSGGOG00000011991) #13	ENSGGOG00000036486	ACADL (ENSGGOG00000006541) #14	KANSL1L (ENSGGOG00000011150) #15	ENSGGOG00000043889 #16	UNC80 (ENSGGOG00000010917) #17	MAP2 (ENSGGOG00000027310) #18	ENSGGOG00000028471	PTH2R (ENSGGOG00000016959) #20	PIKFYVE (ENSGGOG00000012992) #21	IDH1 (ENSGGOG00000012619) #22	C2orf80 (ENSGGOG00000004332) #23	CRYGA (ENSGGOG00000022179) #25	CRYGB (ENSGGOG00000008895) #26	CRYGC (ENSGGOG00000026944) #27	CRYGD (ENSGGOG00000027001)	ENSGGOG00000040001	PLEKHM3 (ENSGGOG00000000998) #31	ENSGGOG00000043005	FZD5 (ENSGGOG00000042758) #32	CCNYL1 (ENSGGOG00000039803) ##33	ENSGGOG00000022138	METTL21A (ENSGGOG00000015815) #34	CREB1 (ENSGGOG00000024394) #35	KLF7 (ENSGGOG00000009338) #36	CPO (ENSGGOG00000016053)
Orangutan	MODERN SPECIES	15	SPAG16 (ENSPPYG00000013141) #8	IKZF2 (ENSPPYG00000013139) #9	ENSPPYG00000035873	ERBB4 (ENSPPYG00000013138) #10	CPS1 (ENSPPYG00000013137) #11	LANCL1 (ENSPPYG00000033825) #12	MYL1 (ENSPPYG00000013135) #13	ENSPPYG00000013134	ACADL (ENSPPYG00000037453) #14	KANSL1L (ENSPPYG00000013133) #15	RPE (ENSPPYG00000030957) #16	UNC80 (ENSPPYG00000013131) #17	MAP2 (ENSPPYG00000013128) #18	PTH2R (ENSPPYG00000013127) #20	PIKFYVE (ENSPPYG00000013126) #21	IDH1 (ENSPPYG00000013125) #22	C2BH2orf80 (ENSPPYG00000013124) #23	CRYGA (ENSPPYG00000031928) #25	CRYGB (ENSPPYG00000013386) #26	CRYGC (ENSPPYG00000035452) #27	ENSPPYG00000040257	PLEKHM3 (ENSPPYG00000013121) #31	ENSPPYG00000013120	FZD5 (ENSPPYG00000013119) #32	CCNYL1 (ENSPPYG00000013118) ##33	METTL21A (ENSPPYG00000013116) #34	CREB1 (ENSPPYG00000013115) #35	KLF7 (ENSPPYG00000013114) #36	CPO (ENSPPYG00000013113)	FASTKD2 (ENSPPYG00000013112)	MDH1B (ENSPPYG00000013111)
Gibbon	MODERN SPECIES	14	SPAG16 (ENSNLEG00000007201) #8	IKZF2 (ENSNLEG00000031188) #9	ERBB4 (ENSNLEG00000007195) #10	CPS1 (ENSNLEG00000007187) #11	LANCL1 (ENSNLEG00000007182) #12	MYL1 (ENSNLEG00000007180) #13	ENSNLEG00000007179	ACADL (ENSNLEG00000007175) #14	ENSNLEG00000007174 #15	ENSNLEG00000027381 #16	UNC80 (ENSNLEG00000007162) #17	MAP2 (ENSNLEG00000007156) #18	ENSNLEG00000035981	PTH2R (ENSNLEG00000007155) #20	PIKFYVE (ENSNLEG00000007150) #21	IDH1 (ENSNLEG00000007143) #22	ENSNLEG00000007142 #23	CRYGA (ENSNLEG00000007141) #25	CRYGB (ENSNLEG00000007137) #26	CRYGC (ENSNLEG00000007139) #27	ENSNLEG00000035688	PLEKHM3 (ENSNLEG00000007136) #31	ENSNLEG00000032494	ENSNLEG00000031847	ENSNLEG00000035287	FZD5 (ENSNLEG00000029167) #32	CCNYL1 (ENSNLEG00000007131) ##33	METTL21A (ENSNLEG00000007129) #34	CREB1 (ENSNLEG00000007124) #35	KLF7 (ENSNLEG00000035258) #36	CPO (ENSNLEG00000007121)
Platyrrhini	ANCESTRAL SPECIES	90																ENSGT00390000012547.b.b.b #22	ENSGT01010000222287.B.b.a.a.b
Mas night monkey	MODERN SPECIES	1003															ENSANAG00000030795	ENSANAG00000026597 #22	HTR1E (ENSANAG00000020260)	CGA (ENSANAG00000025451)	ZNF292 (ENSANAG00000023824)	SMIM8 (ENSANAG00000031913)	C6orf163 (ENSANAG00000020423)	ENSANAG00000036217	SLC35A1 (ENSANAG00000023414)	RARS2 (ENSANAG00000027711)	ORC3 (ENSANAG00000038422)	AKIRIN2 (ENSANAG00000030566)	ENSANAG00000027715	SPACA1 (ENSANAG00000022733)	ENSANAG00000022019	RNGTT (ENSANAG00000022118)	ENSANAG00000001631
Cebidae	ANCESTRAL SPECIES	85																ENSGT00390000012547.b.b.b #22	ENSGT01010000222287.B.b.a.a.b
Cebidae_a	ANCESTRAL SPECIES	59	ENSGT00390000016421.b.b	ENSGT00390000000509	ENSGT00390000007224.a	ENSGT00950000183134.c.a.b	ENSGT00390000000155.b	ENSGT00950000183068.b	ENSGT00940000161538	ENSGT00940000155536	ENSGT00650000093438	ENSGT00390000009631	ENSGT00940000155566	ENSGT00530000063775	ENSGT00950000182856.a.b	ENSGT00940000153511.b	ENSGT00390000008099.w.a	ENSGT00390000012547.b.b.b #22	ENSGT01010000222287.B.b.a.a.b	ENSGT00390000012242	ENSGT00950000183034.C	ENSGT00390000011674	ENSGT00390000010837	ENSGT00390000016036.hb	ENSGT00950000182827.E	ENSGT00530000063407.a	ENSGT00390000011376.f	ENSGT00900000143774	ENSGT00940000156096	ENSGT00390000004211	ENSGT00940000156953	ENSGT00530000063881.a.a	ENSGT00940000160519
Capuchin	MODERN SPECIES	43	C6orf52 (ENSCCAG00000025777)	GCNT2 (ENSCCAG00000038039)	ENSCCAG00000024728	ENSCCAG00000029494	TFAP2A (ENSCCAG00000036532)	ENSCCAG00000026702	ENSCCAG00000026536	SLC35B3 (ENSCCAG00000026344)	ENSCCAG00000035126	ENSCCAG00000031071	BLOC1S5 (ENSCCAG00000023842)	TXNDC5 (ENSCCAG00000022735)	BMP6 (ENSCCAG00000024255)	SNRNP48 (ENSCCAG00000035652)	DSP (ENSCCAG00000002153)	ENSCCAG00000033486 #22	RIOK1 (ENSCCAG00000024061)	CAGE1 (ENSCCAG00000037882)	SSR1 (ENSCCAG00000030293)	RREB1 (ENSCCAG00000021905)	LY86 (ENSCCAG00000020400)	F13A1 (ENSCCAG00000036141)	NRN1 (ENSCCAG00000024735)
Bolivian squirrel monkey	MODERN SPECIES	49	DOP1A (ENSSBOG00000024864)	PGM3 (ENSSBOG00000029648)	RWDD2A (ENSSBOG00000033415)	ME1 (ENSSBOG00000022150)	PRSS35 (ENSSBOG00000007757)	SNAP91 (ENSSBOG00000029389)	RIPPLY2 (ENSSBOG00000034057)	CYB5R4 (ENSSBOG00000034068)	MRAP2 (ENSSBOG00000032325)	CEP162 (ENSSBOG00000028566)	TBX18 (ENSSBOG00000030588)	NT5E (ENSSBOG00000028109)	SNX14 (ENSSBOG00000025784)	SYNCRIP (ENSSBOG00000022984)	ENSSBOG00000030755	ENSSBOG00000024891 #22	HTR1E (ENSSBOG00000019342)	CGA (ENSSBOG00000020930)	ENSSBOG00000030795	ZNF292 (ENSSBOG00000032717)	SMIM8 (ENSSBOG00000031234)	C6orf163 (ENSSBOG00000000095)	ENSSBOG00000032943	SLC35A1 (ENSSBOG00000034765)	RARS2 (ENSSBOG00000006101)	ENSSBOG00000036022	ORC3 (ENSSBOG00000025705)	AKIRIN2 (ENSSBOG00000020946)	SPACA1 (ENSSBOG00000031936)	ENSSBOG00000032226	RNGTT (ENSSBOG00000021985)
Laurasiatheria	ANCESTRAL SPECIES	12	ENSGT00940000157137 #9	ENSGT00390000002231.d.b	ENSGT00940000154695 #10	ENSGT00940000157192 #11	ENSGT00530000063186.b.b #12	ENSGT01030000234570.d.a #13	ENSGT00940000157652 #14	ENSGT00530000063688.a #15	ENSGT00390000001447 #16	ENSGT01030000235330	ENSGT00640000091496 #17	ENSGT00940000156597.b #18	ENSGT00940000159094 #20	ENSGT00940000156307.b #21	ENSGT00940000177631	ENSGT00390000012547.b #22	ENSGT00390000004840 #23	ENSGT00940000156190.h #25	ENSGT00940000159232.h.a #26	ENSGT00940000156190.g ##25	ENSGT00940000159232.h.b #27	ENSGT00940000158720.c.a	ENSGT00940000158720.c.b	ENSGT00940000159743 #31	ENSGT00940000162639 #32	ENSGT00940000154453.b.b ##33	ENSGT00940000157249 #34	ENSGT00940000155408 #35	ENSGT00940000155235 #36	ENSGT00940000161508	ENSGT01030000234607.A.b
Eulipotyphla	ANCESTRAL SPECIES																	ENSGT00390000012547.b #22
Hedgehog	MODERN SPECIES	3608																IDH1 (ENSEEUG00000011994) #22
Common shrew	MODERN SPECIES	2719																IDH1 (ENSSARG00000011164) #22
Laurasiatheria_a	ANCESTRAL SPECIES	16	ENSGT00940000157137 #9	ENSGT00390000002231.d.b	ENSGT00940000154695 #10	ENSGT00940000157192 #11	ENSGT00530000063186.b.b #12	ENSGT01030000234570.d.a #13	ENSGT00940000157652 #14	ENSGT00530000063688.a #15	ENSGT00390000001447 #16	ENSGT01030000235330	ENSGT00640000091496 #17	ENSGT00940000156597.b #18	ENSGT00940000159094 #20	ENSGT00940000156307.b #21	ENSGT00940000177631	ENSGT00390000012547.b #22	ENSGT00390000004840 #23	ENSGT00940000156190.h #25	ENSGT00940000159232.h.a #26	ENSGT00940000156190.g ##25	ENSGT00940000159232.h.b #27	ENSGT00940000158720.c.a	ENSGT00940000158720.c.b	ENSGT00940000159743 #31	ENSGT00940000162639 #32	ENSGT00940000154453.b.b ##33	ENSGT00940000157249 #34	ENSGT00940000155408 #35	ENSGT00940000155235 #36	ENSGT00940000161508	ENSGT01030000234607.A.b
Artiodactyla	ANCESTRAL SPECIES	13	ENSGT00940000157137 #9	ENSGT00390000002231.d.b	ENSGT00940000154695 #10	ENSGT00940000157192 #11	ENSGT00530000063186.b.b #12	ENSGT01030000234570.d.a #13	ENSGT00940000157652 #14	ENSGT00530000063688.a #15	ENSGT00390000001447 #16	ENSGT01030000235330	ENSGT00640000091496 #17	ENSGT00940000156597.b #18	ENSGT00940000159094 #20	ENSGT00940000156307.b #21	ENSGT00940000177631	ENSGT00390000012547.b #22	ENSGT00390000004840 #23	ENSGT00940000156190.h #25	ENSGT00940000159232.h.a #26	ENSGT00940000156190.g ##25	ENSGT00940000159232.h.b #27	ENSGT00940000158720.c.a	ENSGT00940000158720.c.b	ENSGT00940000159743 #31	ENSGT00940000162639 #32	ENSGT00940000154453.b.a.a #33	ENSGT00940000157249 #34	ENSGT00940000155408 #35	ENSGT00940000155235 #36	ENSGT00940000161508	ENSGT01030000234607.A.b
Suina	ANCESTRAL SPECIES	3	ENSGT00940000155053 #8	ENSGT00940000157137 #9	ENSGT00390000002231.d.b	ENSGT00940000154695 #10	ENSGT00940000157192 #11	ENSGT00530000063186.b.b #12	ENSGT01030000234570.d.a #13	ENSGT00940000157652 #14	ENSGT00530000063688.a #15	ENSGT00390000001447 #16	ENSGT00640000091496 #17	ENSGT00940000156597.b #18	ENSGT00940000158720.c.b	ENSGT00940000159094 #20	ENSGT00940000156307.b #21	ENSGT00390000012547.b #22	ENSGT00390000004840 #23	ENSGT00940000156190.h #25	ENSGT00940000159232.h.a #26	ENSGT00940000159232.h.b #27	ENSGT00940000158720.c.a	ENSGT00940000159743 #31	ENSGT00940000162639 #32	ENSGT00940000154453.b.b ##33	ENSGT00940000154453.b.a.a #33	ENSGT00940000157249 #34	ENSGT00940000155408 #35	ENSGT00940000155235 #36	ENSGT00940000161508	ENSGT01030000234607.A.b	ENSGT00530000063410.b
Pig	MODERN SPECIES	6	ENSSSCG00000037703	ERBB4 (ENSSSCG00000016160) #10	CPS1 (ENSSSCG00000016159) #11	LANCL1 (ENSSSCG00000016158) #12	MYL1 (ENSSSCG00000016157) #13	ACADL (ENSSSCG00000016156) #14	ENSSSCG00000060126	KANSL1L (ENSSSCG00000022830) #15	ENSSSCG00000032311 #16	UNC80 (ENSSSCG00000016153) #17	MAP2 (ENSSSCG00000016151) #18	ENSSSCG00000038814	ENSSSCG00000032020	PTH2R (ENSSSCG00000016148) #20	PIKFYVE (ENSSSCG00000016147) #21	IDH1 (ENSSSCG00000023264) #22	C2orf80 (ENSSSCG00000032040) #23	ENSSSCG00000039241 ##25	CRYGC (ENSSSCG00000039620) #27	CRYGD (ENSSSCG00000034967)	ENSSSCG00000036186	PLEKHM3 (ENSSSCG00000016141) #31	FZD5 (ENSSSCG00000016140) #32	ENSSSCG00000024696 ##33	METTL21A (ENSSSCG00000036466) #34	CREB1 (ENSSSCG00000034395) #35	ENSSSCG00000042730	KLF7 (ENSSSCG00000029998) #36	CPO (ENSSSCG00000016135)	FASTKD2 (ENSSSCG00000016134)	MDH1B (ENSSSCG00000016133)
Chacoan peccary	MODERN SPECIES	940	ERBB4 (ENSCWAG00000010989) #10	ENSCWAG00000011700	ENSCWAG00000011727	ENSCWAG00000011755	CPS1 (ENSCWAG00000011796) #11	LANCL1 (ENSCWAG00000012920) #12	MYL1 (ENSCWAG00000012965) #13	ACADL (ENSCWAG00000013051) #14	KANSL1L (ENSCWAG00000013105) #15	ENSCWAG00000013228 #16	UNC80 (ENSCWAG00000013389) #17	ENSCWAG00000014500 #18	ENSCWAG00000014678	PTH2R (ENSCWAG00000014718) #20	PIKFYVE (ENSCWAG00000014910) #21	IDH1 (ENSCWAG00000015021) #22	C2orf80 (ENSCWAG00000015065) #23	CRYGA (ENSCWAG00000015197) #25	CRYGB (ENSCWAG00000015245) #26	CRYGC (ENSCWAG00000015274) #27	CRYGD (ENSCWAG00000015313)	PLEKHM3 (ENSCWAG00000015435) #31	FZD5 (ENSCWAG00000015512) #32
Artiodactyla_a	ANCESTRAL SPECIES	13	ENSGT00940000157137 #9	ENSGT00390000002231.d.b	ENSGT00940000154695 #10	ENSGT00940000157192 #11	ENSGT00530000063186.b.b #12	ENSGT01030000234570.d.a #13	ENSGT00940000157652 #14	ENSGT00530000063688.a #15	ENSGT00390000001447 #16	ENSGT01030000235330	ENSGT00640000091496 #17	ENSGT00940000156597.b #18	ENSGT00940000159094 #20	ENSGT00940000156307.b #21	ENSGT00940000177631	ENSGT00390000012547.b #22	ENSGT00390000004840 #23	ENSGT00940000156190.h #25	ENSGT00940000159232.h.a #26	ENSGT00940000156190.g ##25	ENSGT00940000159232.h.b #27	ENSGT00940000158720.c.a	ENSGT00940000158720.c.b	ENSGT00940000159743 #31	ENSGT00940000162639 #32	ENSGT00940000154453.b.a.a #33	ENSGT00940000157249 #34	ENSGT00940000155408 #35	ENSGT00940000155235 #36	ENSGT00940000161508	ENSGT01030000234607.A.b
Camelidae	ANCESTRAL SPECIES	58	ENSGT00720000108792.B #7	ENSGT00940000155053 #8	ENSGT00940000157137 #9	ENSGT00390000002231.d.b	ENSGT00940000154695 #10	ENSGT00940000157192 #11	ENSGT00530000063186.b.b #12	ENSGT01030000234570.d.a #13	ENSGT00940000157652 #14	ENSGT00530000063688.a #15	ENSGT00390000001447 #16	ENSGT00640000091496 #17	ENSGT00940000156597.b #18	ENSGT00940000159094 #20	ENSGT00940000156307.b #21	ENSGT00390000012547.b #22	ENSGT00390000004840 #23	ENSGT00940000156190.h #25	ENSGT00940000159232.h.a #26	ENSGT00940000156190.g ##25	ENSGT00940000159232.h.b #27	ENSGT00940000158720.c.a	ENSGT00940000158720.c.b	ENSGT00940000159743 #31	ENSGT00940000162639 #32	ENSGT00940000154453.b.b ##33	ENSGT00940000157249 #34	ENSGT00940000155408 #35	ENSGT00940000155235 #36	ENSGT00940000161508	ENSGT01030000234607.A.b
Arabian camel	MODERN SPECIES	31	IKZF2 (ENSCDRG00005010931) #9	ENSCDRG00005011221	ERBB4 (ENSCDRG00005011281) #10	ENSCDRG00005011902	CPS1 (ENSCDRG00005011935) #11	LANCL1 (ENSCDRG00005012357) #12	MYL1 (ENSCDRG00005012450) #13	ACADL (ENSCDRG00005012612) #14	KANSL1L (ENSCDRG00005012697) #15	ENSCDRG00005012826 #16	UNC80 (ENSCDRG00005012995) #17	MAP2 (ENSCDRG00005014163) #18	ENSCDRG00005014776	PTH2R (ENSCDRG00005014818) #20	PIKFYVE (ENSCDRG00005014910) #21	IDH1 (ENSCDRG00005015742) #22	C2orf80 (ENSCDRG00005015804) #23	CRYGA (ENSCDRG00005015861) #25	CRYGB (ENSCDRG00005015889) #26	CRYGC (ENSCDRG00005015923) #27	CRYGD (ENSCDRG00005015948)	ENSCDRG00005015995	PLEKHM3 (ENSCDRG00005016026) #31	FZD5 (ENSCDRG00005016088) #32	ENSCDRG00005016106	METTL21A (ENSCDRG00005016143) #34	CREB1 (ENSCDRG00005016249) #35	KLF7 (ENSCDRG00005016375) #36	CPO (ENSCDRG00005016423)	FASTKD2 (ENSCDRG00005016506)	MDH1B (ENSCDRG00005016545)
Alpaca	MODERN SPECIES	2534														PTH2R (ENSVPAG00000009705) #20	PIKFYVE (ENSVPAG00000009702) #21	IDH1 (ENSVPAG00000009700) #22	C2orf80 (ENSVPAG00000009699) #23	CRYGA (ENSVPAG00000009698) #25	ENSVPAG00000009697 ##25	CRYGC (ENSVPAG00000009696) #27	CRYGD (ENSVPAG00000009695)	PLEKHM3 (ENSVPAG00000009694) #31
Artiodactyla_b	ANCESTRAL SPECIES	12	ENSGT00940000157137 #9	ENSGT00390000002231.d.b	ENSGT00940000154695 #10	ENSGT00940000157192 #11	ENSGT00530000063186.b.b #12	ENSGT01030000234570.d.a #13	ENSGT00940000157652 #14	ENSGT00530000063688.a #15	ENSGT00390000001447 #16	ENSGT01030000235330.d	ENSGT00640000091496 #17	ENSGT00940000156597.b #18	ENSGT00940000159094 #20	ENSGT00940000156307.b #21	ENSGT00940000177631	ENSGT00390000012547.b #22	ENSGT00390000004840 #23	ENSGT00940000156190.h #25	ENSGT00940000159232.h.a #26	ENSGT00940000156190.g ##25	ENSGT00940000159232.h.b #27	ENSGT00940000158720.c.a	ENSGT00940000158720.c.b	ENSGT00940000159743 #31	ENSGT00940000162639 #32	ENSGT00940000154453.b.a.a #33	ENSGT00940000157249 #34	ENSGT00940000155408 #35	ENSGT00940000155235 #36	ENSGT00940000161508	ENSGT01030000234607.A.b
Cetacea	ANCESTRAL SPECIES	14	ENSGT00390000002231.d.b	ENSGT00940000154695 #10	ENSGT00530000065303.j	ENSGT00940000157192 #11	ENSGT00530000063186.b.b #12	ENSGT01030000234570.d.a #13	ENSGT00940000157652 #14	ENSGT00530000063688.a #15	ENSGT00390000001447 #16	ENSGT01030000235330.d	ENSGT00640000091496 #17	ENSGT00940000156597.b #18	ENSGT00940000158720.c.b	ENSGT00940000159094 #20	ENSGT00940000156307.b #21	ENSGT00390000012547.b #22	ENSGT00390000004840 #23	ENSGT00940000156190.h #25	ENSGT00940000159232.h.a #26	ENSGT00940000156190.g ##25	ENSGT00940000159232.h.b #27	ENSGT00940000158720.c.a	ENSGT00390000006670.d	ENSGT00940000159743 #31	ENSGT00940000162639 #32	ENSGT00940000154453.b.b ##33	ENSGT00390000001958.n.a.g	ENSGT00940000157249 #34	ENSGT00940000155408 #35	ENSGT00940000155235 #36	ENSGT01030000234607.A.b
Odontoceti	ANCESTRAL SPECIES	13	ENSGT00940000157137 #9	ENSGT00390000002231.d.b	ENSGT00940000154695 #10	ENSGT00530000065303.j	ENSGT00940000157192 #11	ENSGT00530000063186.b.b #12	ENSGT01030000234570.d.a #13	ENSGT00940000157652 #14	ENSGT00530000063688.a #15	ENSGT00390000001447 #16	ENSGT01030000235330.d	ENSGT00640000091496 #17	ENSGT00940000156597.b #18	ENSGT00940000159094 #20	ENSGT00940000156307.b #21	ENSGT00390000012547.b #22	ENSGT00390000004840 #23	ENSGT00940000156190.h #25	ENSGT00940000156190.g ##25	ENSGT00940000159232.h.b #27	ENSGT00940000158720.c.a	ENSGT00940000158720.c.b	ENSGT00940000159743 #31	ENSGT00940000162639 #32	ENSGT00940000154453.b.b ##33	ENSGT00390000004738.q.b	ENSGT00390000001958.n.a.g	ENSGT00940000157249 #34	ENSGT00940000155408 #35	ENSGT00940000155235 #36	ENSGT01030000234607.A.b
Odontoceti_a	ANCESTRAL SPECIES	10	ENSGT00390000002231.d.b	ENSGT00940000154695 #10	ENSGT00530000065303.j	ENSGT00940000157192 #11	ENSGT00530000063186.b.b #12	ENSGT01030000234570.d.a #13	ENSGT00940000157652 #14	ENSGT00530000063688.a #15	ENSGT00390000001447 #16	ENSGT01030000235330.d	ENSGT00640000091496 #17	ENSGT00940000156597.b #18	ENSGT00940000158720.c.b	ENSGT00940000159094 #20	ENSGT00940000156307.b #21	ENSGT00390000012547.b #22	ENSGT00390000004840 #23	ENSGT00940000156190.h #25	ENSGT00940000156190.g ##25	ENSGT00940000159232.h.b #27	ENSGT00940000158720.c.a	ENSGT00390000006670.d	ENSGT00940000159743 #31	ENSGT00940000162639 #32	ENSGT00940000154453.b.b ##33	ENSGT00390000001958.n.a.g	ENSGT00940000157249 #34	ENSGT00940000155408 #35	ENSGT00940000155235 #36	ENSGT01030000234607.A.b	ENSGT00530000063410.b
Odontoceti_b	ANCESTRAL SPECIES	12	ENSGT00390000002231.d.b	ENSGT00940000154695 #10	ENSGT00530000065303.j	ENSGT00940000157192 #11	ENSGT00530000063186.b.b #12	ENSGT01030000234570.d.a #13	ENSGT00940000157652 #14	ENSGT00530000063688.a #15	ENSGT00390000001447.qb #16	ENSGT01030000235330.d	ENSGT00640000091496 #17	ENSGT00940000156597.b #18	ENSGT00940000158720.c.b.x	ENSGT00940000159094 #20	ENSGT00940000156307.b #21	ENSGT00390000012547.b #22	ENSGT00390000004840 #23	ENSGT00940000156190.h #25	ENSGT00940000159232.h.a #26	ENSGT00940000159232.h.b #27	ENSGT00940000158720.c.a	ENSGT00940000158720.c.b.w	ENSGT00940000159743 #31	ENSGT00940000162639 #32	ENSGT00940000154453.b.b ##33	ENSGT00390000001958.n.a.g	ENSGT00940000157249 #34	ENSGT00940000155408 #35	ENSGT00940000155235 #36	ENSGT01030000234607.A.b	ENSGT00530000063410.b
Monodontidae	ANCESTRAL SPECIES	10	ENSGT00940000157137 #9	ENSGT00940000154695 #10	ENSGT00530000065303.j	ENSGT00940000157192 #11	ENSGT00530000063186.b.b #12	ENSGT01030000234570.d.a #13	ENSGT00940000157652 #14	ENSGT00530000063688.a #15	ENSGT00390000001447.qb #16	ENSGT01030000235330.d	ENSGT00640000091496 #17	ENSGT00940000156597.b #18	ENSGT00940000158720.c.b.x	ENSGT00940000159094 #20	ENSGT00940000156307.b #21	ENSGT00390000012547.b #22	ENSGT00390000004840 #23	ENSGT00940000156190.h #25	ENSGT00940000156190.g ##25	ENSGT00940000159232.h.b #27	ENSGT00940000158720.c.a	ENSGT00940000158720.c.b.w	ENSGT00390000006670.d	ENSGT00940000159743 #31	ENSGT00940000162639 #32	ENSGT00940000154453.b.b ##33	ENSGT00390000001958.n.a.g	ENSGT00940000157249 #34	ENSGT00940000155408 #35	ENSGT00940000155235 #36	ENSGT01030000234607.A.b
Narwhal	MODERN SPECIES	302	IKZF2 (ENSMMNG00015007711) #9	ERBB4 (ENSMMNG00015007770) #10	ENSMMNG00015007841	CPS1 (ENSMMNG00015007884) #11	LANCL1 (ENSMMNG00015008039) #12	MYL1 (ENSMMNG00015008068) #13	ENSMMNG00015008099	ACADL (ENSMMNG00015008110) #14	KANSL1L (ENSMMNG00015008134) #15	ENSMMNG00015008179 #16	UNC80 (ENSMMNG00015008270) #17	MAP2 (ENSMMNG00015008438) #18	ENSMMNG00015008487	PTH2R (ENSMMNG00015008501) #20	PIKFYVE (ENSMMNG00015008559) #21	IDH1 (ENSMMNG00015008654) #22	C2orf80 (ENSMMNG00015008684) #23	CRYGA (ENSMMNG00015008711) #25	CRYGC (ENSMMNG00015008725) #27	ENSMMNG00015008733	PLEKHM3 (ENSMMNG00015008741) #31	ENSMMNG00015005195	FZD5 (ENSMMNG00015005204) #32	ENSMMNG00015005216 ##33	ENSMMNG00015005240	ENSMMNG00015005252	METTL21A (ENSMMNG00015005268) #34	CREB1 (ENSMMNG00015005293) #35	KLF7 (ENSMMNG00015005320) #36	FASTKD2 (ENSMMNG00015005336)	MDH1B (ENSMMNG00015005351)
Beluga whale	MODERN SPECIES	84	IKZF2 (ENSDLEG00000011195) #9	ERBB4 (ENSDLEG00000011065) #10	ENSDLEG00000011044	CPS1 (ENSDLEG00000010899) #11	LANCL1 (ENSDLEG00000010841) #12	ENSDLEG00000010817 #13	ACADL (ENSDLEG00000010802) #14	KANSL1L (ENSDLEG00000010779) #15	ENSDLEG00000010744 #16	ENSDLEG00000010732	UNC80 (ENSDLEG00000010609) #17	MAP2 (ENSDLEG00000010499) #18	ENSDLEG00000010475	PTH2R (ENSDLEG00000010408) #20	PIKFYVE (ENSDLEG00000010278) #21	IDH1 (ENSDLEG00000010202) #22	C2orf80 (ENSDLEG00000010165) #23	CRYGB (ENSDLEG00000010148) ##25	ENSDLEG00000010132 #27	CRYGD (ENSDLEG00000010113)	ENSDLEG00000010093	ENSDLEG00000010082	PLEKHM3 (ENSDLEG00000010056) #31	FZD5 (ENSDLEG00000010035) #32	CCNYL1 (ENSDLEG00000009986) ##33	ENSDLEG00000009965	ENSDLEG00000009942	METTL21A (ENSDLEG00000009925) #34	CREB1 (ENSDLEG00000009895) #35	KLF7 (ENSDLEG00000009871) #36	FASTKD2 (ENSDLEG00000009822)
Vaquita	MODERN SPECIES	18	IKZF2 (ENSPSNG00000017845) #9	ENSPSNG00000017988	ERBB4 (ENSPSNG00000018144) #10	ENSPSNG00000018762	CPS1 (ENSPSNG00000018881) #11	LANCL1 (ENSPSNG00000019514) #12	MYL1 (ENSPSNG00000019567) #13	ACADL (ENSPSNG00000019649) #14	KANSL1L (ENSPSNG00000019694) #15	ENSPSNG00000019741 #16	UNC80 (ENSPSNG00000020123) #17	MAP2 (ENSPSNG00000021466) #18	ENSPSNG00000021538	PTH2R (ENSPSNG00000021559) #20	PIKFYVE (ENSPSNG00000021640) #21	IDH1 (ENSPSNG00000021741) #22	C2orf80 (ENSPSNG00000021785) #23	CRYGB (ENSPSNG00000021815) #26	CRYGC (ENSPSNG00000021832) #27	CRYGD (ENSPSNG00000021845)	ENSPSNG00000021854	PLEKHM3 (ENSPSNG00000021878) #31	ENSPSNG00000021899	ENSPSNG00000021913	ENSPSNG00000021936 ##33	ENSPSNG00000021964	ENSPSNG00000021984	METTL21A (ENSPSNG00000022000) #34	CREB1 (ENSPSNG00000022021) #35	KLF7 (ENSPSNG00000022054) #36	FASTKD2 (ENSPSNG00000022088)
Dolphin	MODERN SPECIES	2492														PTH2R (ENSTTRG00000016395) #20	PIKFYVE (ENSTTRG00000016391) #21	IDH1 (ENSTTRG00000016390) #22	C2orf80 (ENSTTRG00000016389) #23
Sperm whale	MODERN SPECIES	11	ERBB4 (ENSPCTG00005008147) #10	ENSPCTG00005008116	CPS1 (ENSPCTG00005007806) #11	LANCL1 (ENSPCTG00005007711) #12	ENSPCTG00005007695 #13	ENSPCTG00005007683 #13	MYL1 (ENSPCTG00005007638) #13	ACADL (ENSPCTG00005007603) #14	KANSL1L (ENSPCTG00005007546) #15	RPE (ENSPCTG00005007416) #16	UNC80 (ENSPCTG00005006733) #17	MAP2 (ENSPCTG00005006282) #18	ENSPCTG00005006233	PTH2R (ENSPCTG00005006194) #20	PIKFYVE (ENSPCTG00005005700) #21	IDH1 (ENSPCTG00005005612) #22	C2orf80 (ENSPCTG00005005458) #23	CRYGB (ENSPCTG00005005428) #26	ENSPCTG00005005404 ##26	CRYGC (ENSPCTG00005005389) #27	CRYGD (ENSPCTG00005005372)	ENSPCTG00005005346	PLEKHM3 (ENSPCTG00005005303) #31	FZD5 (ENSPCTG00005005280) #32	CCNYL1 (ENSPCTG00005005234) ##33	ENSPCTG00005005205	ENSPCTG00005005181	METTL21A (ENSPCTG00005005122) #34	CREB1 (ENSPCTG00005005085) #35	KLF7 (ENSPCTG00005005002) #36	FASTKD2 (ENSPCTG00005004965)
Blue whale	MODERN SPECIES	18	ENSBMSG00010003157	ERBB4 (ENSBMSG00010003029) #10	ENSBMSG00010002996	CPS1 (ENSBMSG00010002893) #11	LANCL1 (ENSBMSG00010002864) #12	MYL1 (ENSBMSG00010002843) #13	ENSBMSG00010002831	ACADL (ENSBMSG00010002817) #14	KANSL1L (ENSBMSG00010002800) #15	ENSBMSG00010002786 #16	UNC80 (ENSBMSG00010002392) #17	MAP2 (ENSBMSG00010001833) #18	ENSBMSG00010001803	PTH2R (ENSBMSG00010001780) #20	PIKFYVE (ENSBMSG00010001711) #21	IDH1 (ENSBMSG00010001674) #22	ENSBMSG00010001666	ENSBMSG00010001661	METTL21A (ENSBMSG00010001644) #34	CREB1 (ENSBMSG00010001606) #35	KLF7 (ENSBMSG00010001534) #36	FASTKD2 (ENSBMSG00010001509)	MDH1B (ENSBMSG00010001465)	DYTN (ENSBMSG00010001424)	FAM237A (ENSBMSG00010001408)	ADAM23 (ENSBMSG00010001305)	ZDBF2 (ENSBMSG00010001246)	CMKLR2 (ENSBMSG00010001229)	EEF1B2 (ENSBMSG00010001199)	NDUFS1 (ENSBMSG00010001085)	ENSBMSG00010001036
Pecora	ANCESTRAL SPECIES	16	ENSGT00940000155053 #8	ENSGT00940000157137 #9	ENSGT00940000154695 #10	ENSGT00940000157192 #11	ENSGT00530000063186.b.b #12	ENSGT01030000234570.d.a #13	ENSGT00940000157652 #14	ENSGT00530000063688.a #15	ENSGT00390000001447 #16	ENSGT00640000091496 #17	ENSGT00940000156597.b #18	ENSGT00940000158720.c.b.t	ENSGT00940000159094 #20	ENSGT00940000156307.b #21	ENSGT00940000177631	ENSGT00390000012547.b #22	ENSGT00390000004840 #23	ENSGT00940000156190.h #25	ENSGT00940000159232.h.a #26	ENSGT00940000156190.g ##25	ENSGT00940000159232.h.b #27	ENSGT00940000158720.c.a	ENSGT00940000158720.c.b.s	ENSGT00940000159743 #31	ENSGT00940000162639 #32	ENSGT00940000154453.b.a.a #33	ENSGT00940000157249 #34	ENSGT00940000155408 #35	ENSGT00940000155235 #36	ENSGT00940000161508	ENSGT01030000234607.A.b
Yarkand deer	DUPLICATION
Yarkand deer	DUPLICATION
Yarkand deer	MODERN SPECIES	31	CPS1 (ENSCHYG00000004084) #11	LANCL1 (ENSCHYG00000004128) #12	ENSCHYG00000004138	MYL1 (ENSCHYG00000004152) #13	ACADL (ENSCHYG00000004178) #14	ENSCHYG00000004220	KANSL1L (ENSCHYG00000004240) #15	ENSCHYG00000004274 #16	UNC80 (ENSCHYG00000000452) #17	MAP2 (ENSCHYG00000000996) #18	ENSCHYG00000001066	ENSCHYG00000001080	PTH2R (ENSCHYG00000001108) #20	ENSCHYG00000001125	PIKFYVE (ENSCHYG00000001177) #21	ENSCHYG00000001240 #22	C2orf80 (ENSCHYG00000001293) #23	CRYGA (ENSCHYG00000001333) #25	ENSCHYG00000001348 ##25	CRYGC (ENSCHYG00000001360) #27	CRYGD (ENSCHYG00000001364)	ENSCHYG00000001381	PLEKHM3 (ENSCHYG00000001407) #31	ENSCHYG00000001470	FZD5 (ENSCHYG00000001477) #32	ENSCHYG00000001504 #34	CREB1 (ENSCHYG00000001543) #35	KLF7 (ENSCHYG00000001583) #36	CPO (ENSCHYG00000001618)	FASTKD2 (ENSCHYG00000001648)	MDH1B (ENSCHYG00000001680)
Yarkand deer	MODERN SPECIES	5	ENSCHYG00000026976	CFAP74 (ENSCHYG00000026970)	GABRD (ENSCHYG00000026948)	PRKCZ (ENSCHYG00000026939)	ENSCHYG00000026917	SKI (ENSCHYG00000026910)	MORN1 (ENSCHYG00000026899)	RER1 (ENSCHYG00000026890)	ENSCHYG00000026862	PLCH2 (ENSCHYG00000026795)	PANK4 (ENSCHYG00000026707)	HES5 (ENSCHYG00000026669)	PRXL2B (ENSCHYG00000026618)	MMEL1 (ENSCHYG00000026544)	ENSCHYG00000026518	ENSCHYG00000026511 #22	ACTRT2 (ENSCHYG00000026506)	PRDM16 (ENSCHYG00000026484)	ARHGEF16 (ENSCHYG00000026434)	MEGF6 (ENSCHYG00000025807)	TPRG1L (ENSCHYG00000025690)	WRAP73 (ENSCHYG00000025638)	TP73 (ENSCHYG00000025502)	ENSCHYG00000025453	ENSCHYG00000025345	SMIM1 (ENSCHYG00000025319)	LRRC47 (ENSCHYG00000025295)	CEP104 (ENSCHYG00000025105)	DFFB (ENSCHYG00000025029)	C1orf174 (ENSCHYG00000025002)	AJAP1 (ENSCHYG00000024985)
Yarkand deer	MODERN SPECIES	1	ENSCHYG00000007836	CD2BP2 (ENSCHYG00000007863)	TBC1D10B (ENSCHYG00000007925)	MYL11 (ENSCHYG00000007998)	SEPTIN1 (ENSCHYG00000008026)	ZNF48 (ENSCHYG00000008118)	ZNF771 (ENSCHYG00000008140)	DCTPP1 (ENSCHYG00000008164)	SEPHS2 (ENSCHYG00000008191)	ENSCHYG00000008208	ITGAL (ENSCHYG00000000773)	ENSCHYG00000001071	ENSCHYG00000001083	ZNF768 (ENSCHYG00000001097)	ENSCHYG00000001127	ENSCHYG00000001155 #22	PRR14 (ENSCHYG00000001185)	FBRS (ENSCHYG00000001258)	SRCAP (ENSCHYG00000001457)	ENSCHYG00000001599	PHKG2 (ENSCHYG00000001626)	ZNF629 (ENSCHYG00000001654)	CFAP119 (ENSCHYG00000001669)	RNF40 (ENSCHYG00000001704)	BCL7C (ENSCHYG00000001768)	FBXL19 (ENSCHYG00000001809)	ORAI3 (ENSCHYG00000001841)	SETD1A (ENSCHYG00000001856)	HSD3B7 (ENSCHYG00000001916)	STX1B (ENSCHYG00000001985)	STX4 (ENSCHYG00000002066)
Percora_a	ANCESTRAL SPECIES	5	ENSGT00940000155053 #8	ENSGT00940000157137 #9	ENSGT00940000154695 #10	ENSGT00940000157192 #11	ENSGT00530000063186.b.b #12	ENSGT01030000234570.d.a #13	ENSGT00940000157652 #14	ENSGT00530000063688.a #15	ENSGT00390000001447 #16	ENSGT00640000091496 #17	ENSGT00940000156597.b #18	ENSGT00940000158720.c.b.t	ENSGT00940000159094 #20	ENSGT00940000156307.b #21	ENSGT00940000177631	ENSGT00390000012547.b #22	ENSGT00390000004840 #23	ENSGT00940000156190.h #25	ENSGT00940000159232.h.a #26	ENSGT00940000159232.h.b #27	ENSGT00940000158720.c.a	ENSGT00940000158720.c.b.s	ENSGT00940000159743 #31	ENSGT00940000162639 #32	ENSGT00940000154453.b.a.a #33	ENSGT00940000157249 #34	ENSGT00940000155408 #35	ENSGT00940000155235 #36	ENSGT00940000161508	ENSGT01030000234607.A.b	ENSGT00530000063410.b
Bovidae	ANCESTRAL SPECIES	8	ENSGT00940000155053 #8	ENSGT00940000157137 #9	ENSGT00940000154695 #10	ENSGT00940000157192 #11	ENSGT00530000063186.b.b #12	ENSGT01030000234570.d.a #13	ENSGT00940000157652 #14	ENSGT00530000063688.a #15	ENSGT00390000001447 #16	ENSGT00640000091496 #17	ENSGT00940000156597.b #18	ENSGT00940000158720.c.b.t	ENSGT00940000159094 #20	ENSGT00940000156307.b #21	ENSGT00940000177631	ENSGT00390000012547.b #22	ENSGT00390000004840 #23	ENSGT00940000156190.h #25	ENSGT00940000159232.h.a #26	ENSGT00940000156190.g ##25	ENSGT00940000159232.h.b #27	ENSGT00940000158720.c.a	ENSGT00940000153593.c.b	ENSGT00940000158720.c.b.s	ENSGT00940000159743 #31	ENSGT00940000162639 #32	ENSGT00940000154453.b.a.a #33	ENSGT00940000157249 #34	ENSGT00940000155408 #35	ENSGT00940000155235 #36	ENSGT00940000161508
Caprinae	DUPLICATION
Caprinae	ANCESTRAL SPECIES	5	ENSGT00940000155053 #8	ENSGT00940000157137 #9	ENSGT00940000154695 #10	ENSGT01010000228811	ENSGT00940000157192 #11	ENSGT00530000063186.b.b #12	ENSGT01030000234570.d.a #13	ENSGT00940000157652 #14	ENSGT00530000063688.a #15	ENSGT00390000001447.lb.a #16	ENSGT00640000091496 #17	ENSGT00940000156597.b #18	ENSGT00940000158720.c.b.t	ENSGT00940000159094 #20	ENSGT00940000156307.b #21	ENSGT00390000012547.b.g #22	ENSGT00390000004840 #23	ENSGT00940000156190.h #25	ENSGT00940000159232.h.a #26	ENSGT00940000159232.h.b #27	ENSGT00940000158720.c.a	ENSGT00940000153593.c.b	ENSGT00940000158720.c.b.s	ENSGT00940000159743 #31	ENSGT00940000162639 #32	ENSGT00940000154453.b.a.a #33	ENSGT00940000157249 #34	ENSGT00940000155408 #35	ENSGT00940000155235 #36	ENSGT00940000161508	ENSGT01030000234607.A.b
Goat	MODERN SPECIES	11	IKZF2 (ENSCHIG00000008623) #9	ENSCHIG00000025711 #10	ENSCHIG00000015255	CPS1 (ENSCHIG00000025029) #11	LANCL1 (ENSCHIG00000015499) #12	MYL1 (ENSCHIG00000016096) #13	ACADL (ENSCHIG00000012492) #14	KANSL1L (ENSCHIG00000025531) #15	ENSCHIG00000017628 #16	UNC80 (ENSCHIG00000023318) #17	MAP2 (ENSCHIG00000000510) #18	ENSCHIG00000015978	PTH2R (ENSCHIG00000003956) #20	ENSCHIG00000011874	PIKFYVE (ENSCHIG00000018742) #21	ENSCHIG00000018336 #22	C2orf80 (ENSCHIG00000012414) #23	CRYGA (ENSCHIG00000010538) #25	ENSCHIG00000006930 ##25	ENSCHIG00000018066 #27	ENSCHIG00000014620	ENSCHIG00000012148	ENSCHIG00000012358	PLEKHM3 (ENSCHIG00000008278) #31	FZD5 (ENSCHIG00000007513) #32	ENSCHIG00000011033 #33	METTL21A (ENSCHIG00000003332) #34	CREB1 (ENSCHIG00000027161) #35	KLF7 (ENSCHIG00000006619) #36	CPO (ENSCHIG00000020644)	ENSCHIG00000026347
Rambouillet Sheep	MODERN SPECIES	11	ENSOARG00020022071	ENSOARG00020022058	CPS1 (ENSOARG00020021614) #11	LANCL1 (ENSOARG00020021560) #12	MYL1b (ENSOARG00020021419) #13	ACADL (ENSOARG00020021309) #14	KANSL1L (ENSOARG00020021126) #15	RPE (ENSOARG00020021044) #16	UNC80 (ENSOARG00020019570) #17	MAP2 (ENSOARG00020019287) #18	ENSOARG00020019223	ENSOARG00020019192	PTH2R (ENSOARG00020018956) #20	ENSOARG00020018915	PIKFYVE (ENSOARG00020017062) #21	IDH1 (ENSOARG00020016933) #22	C2orf80 (ENSOARG00020016679) #23	CRYGA (ENSOARG00020016623) #25	CRYGB (ENSOARG00020016583) #26	CRYGC (ENSOARG00020016523) #27	CRYGD (ENSOARG00020016483)	ENSOARG00020016435	PLEKHM3 (ENSOARG00020016241) #31	FZD5 (ENSOARG00020016197) #32	ENSOARG00020016023 #33	METTL21A (ENSOARG00020015859) #34	CREB1 (ENSOARG00020015664) #35	KLF7 (ENSOARG00020015555) #36	CPO (ENSOARG00020015466)	FASTKD2 (ENSOARG00020015403)	MDH1B (ENSOARG00020015160)
Caprinae	ANCESTRAL SPECIES																	ENSGT00390000012547.b.h #22
Goat	MODERN SPECIES	22	ENSCHIG00000013344	ANGPTL3 (ENSCHIG00000018304)	DOCK7 (ENSCHIG00000022741)	USP1 (ENSCHIG00000015997)	KANK4 (ENSCHIG00000026610)	ENSCHIG00000012571	PATJ (ENSCHIG00000023685)	TM2D1 (ENSCHIG00000026504)	ENSCHIG00000012418	NFIA (ENSCHIG00000011380)	C1orf87 (ENSCHIG00000023812)	CYP2J26 (ENSCHIG00000021521)	CYP2J29 (ENSCHIG00000009032)	CYP2J30 (ENSCHIG00000022554)	HOOK1 (ENSCHIG00000025016)	ENSCHIG00000018971 #22	FGGY (ENSCHIG00000022252)	JUN (ENSCHIG00000004093)	MYSM1 (ENSCHIG00000007198)	TACSTD2 (ENSCHIG00000012887)	OMA1 (ENSCHIG00000015440)	ENSCHIG00000025606	DAB1 (ENSCHIG00000024663)	C8B (ENSCHIG00000012131)	C8A (ENSCHIG00000025838)	PRKAA2 (ENSCHIG00000014436)	PLPP3 (ENSCHIG00000022600)	ENSCHIG00000015710	USP24 (ENSCHIG00000021161)	BSND (ENSCHIG00000027205)	TMEM61 (ENSCHIG00000020700)
Bovinae	ANCESTRAL SPECIES	5	ENSGT00940000157137 #9	ENSGT00940000154695 #10	ENSGT00940000157192 #11	ENSGT00530000063186.b.b #12	ENSGT01030000234570.d.a #13	ENSGT00940000157652 #14	ENSGT00530000063688.a #15	ENSGT00390000001447 #16	ENSGT00640000091496 #17	ENSGT00940000156597.b #18	ENSGT00940000158720.c.b.t	ENSGT00940000159094 #20	ENSGT00950000182965.b	ENSGT00940000156307.b #21	ENSGT00940000177631	ENSGT00390000012547.b #22	ENSGT00390000004840 #23	ENSGT00940000156190.h #25	ENSGT00940000156190.g ##25	ENSGT00940000159232.h.b #27	ENSGT00940000158720.c.a	ENSGT00940000153593.c.b	ENSGT00940000158720.c.b.s	ENSGT00940000159743 #31	ENSGT00940000162639 #32	ENSGT00940000154453.b.a.a #33	ENSGT00940000157249 #34	ENSGT00940000155408 #35	ENSGT00940000155235 #36	ENSGT00940000161508	ENSGT01030000234607.A.b
Bos	ANCESTRAL SPECIES	6	ENSGT00940000155053 #8	ENSGT00940000157137 #9	ENSGT00940000154695 #10	ENSGT00940000157192 #11	ENSGT00530000063186.b.b #12	ENSGT01030000234570.d.a #13	ENSGT00940000157652 #14	ENSGT00530000063688.a #15	ENSGT00390000001447 #16	ENSGT00640000091496 #17	ENSGT00940000156597.b #18	ENSGT00940000158720.c.b.t	ENSGT00940000159094 #20	ENSGT00940000156307.b #21	ENSGT00940000177631	ENSGT00390000012547.b #22	ENSGT00390000004840 #23	ENSGT00940000156190.h #25	ENSGT00940000156190.g ##25	ENSGT00940000159232.h.b #27	ENSGT00940000158720.c.a	ENSGT00940000158720.c.b.s	ENSGT00940000159743 #31	ENSGT00940000162639 #32	ENSGT00940000154453.b.a.a #33	ENSGT00940000157249 #34	ENSGT00940000155408 #35	ENSGT00940000155235 #36	ENSGT00940000161508	ENSGT01030000234607.A.b	ENSGT00530000063410.b
Bos_a	ANCESTRAL SPECIES	4	ENSGT00720000108792.B #7	ENSGT00940000155053 #8	ENSGT00940000157137 #9	ENSGT00940000154695 #10	ENSGT00940000157192 #11	ENSGT00530000063186.b.b #12	ENSGT01030000234570.d.a #13	ENSGT00940000157652 #14	ENSGT00530000063688.a #15	ENSGT00390000001447 #16	ENSGT00640000091496 #17	ENSGT00940000156597.b #18	ENSGT00940000158720.c.b.t	ENSGT00940000159094 #20	ENSGT00940000156307.b #21	ENSGT00390000012547.b #22	ENSGT00390000004840 #23	ENSGT00940000156190.h #25	ENSGT00940000159232.h.a #26	ENSGT00940000159232.h.b #27	ENSGT00940000158720.c.a	ENSGT00940000158720.c.b.s	ENSGT00940000159743 #31	ENSGT00940000162639 #32	ENSGT00940000154453.b.a.a #33	ENSGT00940000157249 #34	ENSGT00940000155408 #35	ENSGT00940000155235 #36	ENSGT00940000161508	ENSGT01030000234607.A.b	ENSGT00530000063410.b
Domestic yak	MODERN SPECIES	11	SPAG16 (ENSBGRG00000003519) #8	IKZF2 (ENSBGRG00000003601) #9	ENSBGRG00000003764	ERBB4 (ENSBGRG00000003801) #10	CPS1 (ENSBGRG00000004265) #11	LANCL1 (ENSBGRG00000004687) #12	MYL1 (ENSBGRG00000004749) #13	ACADL (ENSBGRG00000004885) #14	KANSL1L (ENSBGRG00000004930) #15	ENSBGRG00000005051 #16	UNC80 (ENSBGRG00000005202) #17	MAP2 (ENSBGRG00000005995) #18	ENSBGRG00000006119	PTH2R (ENSBGRG00000006150) #20	PIKFYVE (ENSBGRG00000006248) #21	IDH1 (ENSBGRG00000006637) #22	C2orf80 (ENSBGRG00000006683) #23	CRYGA (ENSBGRG00000006786) #25	ENSBGRG00000006816 ##25	CRYGC (ENSBGRG00000006857) #27	CRYGD (ENSBGRG00000006881)	ENSBGRG00000006903	PLEKHM3 (ENSBGRG00000006928) #31	ENSBGRG00000007042	FZD5 (ENSBGRG00000007062) #32	ENSBGRG00000007199 #33	METTL21A (ENSBGRG00000007457) #34	CREB1 (ENSBGRG00000007627) #35	KLF7 (ENSBGRG00000007842) #36	ENSBGRG00000007943	CPO (ENSBGRG00000007969)
Wild yak	MODERN SPECIES	2028																IDH1 (ENSBMUG00000010416) #22	C2orf80 (ENSBMUG00000010376) #23	CRYGA (ENSBMUG00000010314) #25	CRYGB (ENSBMUG00000010304) #26	CRYGC (ENSBMUG00000010295) #27	CRYGD (ENSBMUG00000010261)	ENSBMUG00000010238	PLEKHM3 (ENSBMUG00000010222) #31	FZD5 (ENSBMUG00000010190) #32	ENSBMUG00000010178 #33	METTL21A (ENSBMUG00000010151) #34	CREB1 (ENSBMUG00000010114) #35
Bos_b	ANCESTRAL SPECIES	3	ENSGT00940000154471.a.b.a.a	ENSGT00940000159597	ENSGT00390000006976	ENSGT00390000016408	ENSGT00940000158892.b	ENSGT00940000157652 #14	ENSGT00530000063688.a #15	ENSGT00390000001447 #16	ENSGT00640000091496 #17	ENSGT00940000156597.b #18	ENSGT00940000158720.c.b.t	ENSGT00940000159094 #20	ENSGT00950000182965.b	ENSGT00940000156307.b #21	ENSGT00940000177631	ENSGT00390000012547.b #22	ENSGT00390000004840 #23	ENSGT00940000156190.h #25	ENSGT00940000156190.g ##25	ENSGT00940000159232.h.b #27	ENSGT00940000158720.c.a	ENSGT00940000158720.c.b.s	ENSGT00940000159743 #31	ENSGT00940000162639 #32	ENSGT00940000154453.b.a.a #33	ENSGT00940000157249 #34	ENSGT00940000155408 #35	ENSGT00940000155235 #36	ENSGT00940000161508	ENSGT01030000234607.A.b	ENSGT00530000063410.b
Hybrid Bos Indicus	MODERN SPECIES	11	ERBB4 (ENSBIXG00005026738) #10	CPS1 (ENSBIXG00005027520) #11	LANCL1 (ENSBIXG00005027712) #12	MYL1 (ENSBIXG00005027778) #13	ENSBIXG00005004776	ENSBIXG00005027813	ENSBIXG00005027821	ACADL (ENSBIXG00005027851) #14	KANSL1L (ENSBIXG00005004802) #15	ENSBIXG00005004817 #16	UNC80 (ENSBIXG00005007598) #17	ENSBIXG00005028747	PTH2R (ENSBIXG00005028831) #20	ENSBIXG00005002284	PIKFYVE (ENSBIXG00005029111) #21	IDH1 (ENSBIXG00005001809) #22	C2orf80 (ENSBIXG00005005242) #23	CRYGA (ENSBIXG00005001634) #25	ENSBIXG00005029217 ##25	CRYGC (ENSBIXG00005029223) #27	CRYGD (ENSBIXG00005005265)	ENSBIXG00005005279	PLEKHM3 (ENSBIXG00005001556) #31	ENSBIXG00005001549	ENSBIXG00005031627 #33	FZD5 (ENSBIXG00005031625) #32	CREB1 (ENSBIXG00005031624) #35	ENSBIXG00005031623	KLF7 (ENSBIXG00005031620) #36	CPO (ENSBIXG00005031618)	FASTKD2 (ENSBIXG00005031617)
Cow	MODERN SPECIES	11	ERBB4 (ENSBTAG00000012647) #10	CPS1 (ENSBTAG00000016662) #11	LANCL1 (ENSBTAG00000015066) #12	MYL1 (ENSBTAG00000009707) #13	ENSBTAG00000010722	ACADL (ENSBTAG00000010579) #14	KANSL1L (ENSBTAG00000021600) #15	RPE (ENSBTAG00000054647) #16	UNC80 (ENSBTAG00000015415) #17	MAP2 (ENSBTAG00000018130) #18	ENSBTAG00000052197	PTH2R (ENSBTAG00000011992) #20	ENSBTAG00000002180	PIKFYVE (ENSBTAG00000002177) #21	ENSBTAG00000055312	IDH1 (ENSBTAG00000020527) #22	C2H2orf80 (ENSBTAG00000012888) #23	CRYGA (ENSBTAG00000049076) #25	CRYGB (ENSBTAG00000021770) ##25	CRYGC (ENSBTAG00000014783) #27	CRYGD (ENSBTAG00000015054)	ENSBTAG00000049856	PLEKHM3 (ENSBTAG00000007830) #31	FZD5 (ENSBTAG00000020957) #32	CCNYL1 (ENSBTAG00000016297) #33	METTL21A (ENSBTAG00000052083) #34	CREB1 (ENSBTAG00000005474) #35	KLF7 (ENSBTAG00000044097) #36	CPO (ENSBTAG00000019190)	FASTKD2 (ENSBTAG00000016193)	MDH1B (ENSBTAG00000016192)
American bison	MODERN SPECIES	3330	SPAG16 (ENSBBBG00000000106) #8	IKZF2 (ENSBBBG00000000044) #9	ERBB4 (ENSBBBG00000010300) #10	CPS1 (ENSBBBG00000010353) #11	LANCL1 (ENSBBBG00000010389) #12	MYL1 (ENSBBBG00000010407) #13	ACADL (ENSBBBG00000001806) #14	KANSL1L (ENSBBBG00000010441) #15	ENSBBBG00000007586 #16	UNC80 (ENSBBBG00000010561) #17	MAP2 (ENSBBBG00000010617) #18	ENSBBBG00000010626	PTH2R (ENSBBBG00000010642) #20	ENSBBBG00000010646	PIKFYVE (ENSBBBG00000010714) #21	IDH1 (ENSBBBG00000010731) #22	C2orf80 (ENSBBBG00000010761) #23	CRYGA (ENSBBBG00000010767) #25	CRYGB (ENSBBBG00000010771) #26	CRYGC (ENSBBBG00000001889) #27	CRYGD (ENSBBBG00000010778)	ENSBBBG00000010781	ENSBBBG00000010792	PLEKHM3 (ENSBBBG00000010799) #31	FZD5 (ENSBBBG00000010805) #32	ENSBBBG00000010833 #33	METTL21A (ENSBBBG00000010854) #34	CREB1 (ENSBBBG00000010873) #35	KLF7 (ENSBBBG00000010885) #36	ENSBBBG00000010890	CPO (ENSBBBG00000010898)
Siberian musk deer	MODERN SPECIES	352	ERBB4 (ENSMMSG00000020665) #10	ENSMMSG00000020623	CPS1 (ENSMMSG00000020103) #11	LANCL1 (ENSMMSG00000020057) #12	MYL1 (ENSMMSG00000019985) #13	ACADL (ENSMMSG00000019943) #14	ENSMMSG00000019930	KANSL1L (ENSMMSG00000019864) #15	ENSMMSG00000019805 #16	UNC80 (ENSMMSG00000019152) #17	MAP2 (ENSMMSG00000018946) #18	ENSMMSG00000018909	PTH2R (ENSMMSG00000018791) #20	ENSMMSG00000018713	PIKFYVE (ENSMMSG00000018585) #21	IDH1 (ENSMMSG00000018507) #22	C2orf80 (ENSMMSG00000018380) #23	CRYGA (ENSMMSG00000018345) #25	CRYGB (ENSMMSG00000018324) #26	CRYGC (ENSMMSG00000018298) #27	CRYGD (ENSMMSG00000018278)	ENSMMSG00000018240	PLEKHM3 (ENSMMSG00000018216) #31	ENSMMSG00000018199	FZD5 (ENSMMSG00000018190) #32	ENSMMSG00000018078 #33	ENSMMSG00000017981 #34	CREB1 (ENSMMSG00000017935) #35	ENSMMSG00000017910	KLF7 (ENSMMSG00000017874) #36	CPO (ENSMMSG00000017798)
Laurasiatheria_b	ANCESTRAL SPECIES	16	ENSGT00940000156532	ENSGT00720000108792.B #7	ENSGT00940000155053 #8	ENSGT00940000157137 #9	ENSGT00940000154695 #10	ENSGT00940000157192 #11	ENSGT00530000063186.b.b #12	ENSGT01030000234570.d.a #13	ENSGT00940000157652 #14	ENSGT00530000063688.a #15	ENSGT00390000001447 #16	ENSGT00640000091496 #17	ENSGT00940000156597.b #18	ENSGT00940000159094 #20	ENSGT00940000156307.b #21	ENSGT00390000012547.b #22	ENSGT00390000004840 #23	ENSGT00940000156190.h #25	ENSGT00940000156190.g ##25	ENSGT00940000159232.h.b #27	ENSGT00940000158720.c.a	ENSGT00940000158720.c.b	ENSGT00940000159743 #31	ENSGT00940000162639 #32	ENSGT00940000154453.b.b ##33	ENSGT00940000157249 #34	ENSGT00940000155408 #35	ENSGT00940000155235 #36	ENSGT00940000161508	ENSGT01030000234607.A.b	ENSGT00530000063410.b
Carnivora	ANCESTRAL SPECIES	17	ENSGT00940000156532	ENSGT00720000108792.B #7	ENSGT00940000155053 #8	ENSGT00940000157137 #9	ENSGT00940000154695 #10	ENSGT00940000157192 #11	ENSGT00530000063186.b.b #12	ENSGT01030000234570.d.a #13	ENSGT00940000157652 #14	ENSGT00530000063688.a #15	ENSGT00390000001447 #16	ENSGT00640000091496 #17	ENSGT00940000156597.b #18	ENSGT00940000159094 #20	ENSGT00940000156307.b #21	ENSGT00390000012547.b #22	ENSGT00390000004840 #23	ENSGT00940000156190.h #25	ENSGT00940000156190.g ##25	ENSGT00940000159232.h.b #27	ENSGT00940000158720.c.a	ENSGT00940000158720.c.b	ENSGT00940000159743 #31	ENSGT00940000162639 #32	ENSGT00940000154453.b.b ##33	ENSGT00940000157249 #34	ENSGT00940000155408 #35	ENSGT00940000155235 #36	ENSGT00940000161508	ENSGT01030000234607.A.b	ENSGT00530000063410.b
Caniformia	ANCESTRAL SPECIES	14	ENSGT00940000156532	ENSGT00720000108792.B #7	ENSGT00940000155053 #8	ENSGT00940000157137 #9	ENSGT00940000154695 #10	ENSGT00940000157192 #11	ENSGT00530000063186.b.b #12	ENSGT01030000234570.d.a #13	ENSGT00940000157652 #14	ENSGT00530000063688.a #15	ENSGT00390000001447 #16	ENSGT00640000091496 #17	ENSGT00940000156597.b #18	ENSGT00940000159094 #20	ENSGT00940000156307.b #21	ENSGT00390000012547.b #22	ENSGT00390000004840 #23	ENSGT00940000156190.h #25	ENSGT00940000156190.g ##25	ENSGT00940000159232.h.b #27	ENSGT00940000158720.c.a	ENSGT00940000158720.c.b	ENSGT00940000159743 #31	ENSGT00940000162639 #32	ENSGT00940000154453.b.b ##33	ENSGT00940000157249 #34	ENSGT00940000155408 #35	ENSGT00940000155235 #36	ENSGT00940000161508	ENSGT01030000234607.A.b	ENSGT00530000063410.b
Caniformia_b	ANCESTRAL SPECIES	13	ENSGT00940000156532	ENSGT00720000108792.B #7	ENSGT00940000155053 #8	ENSGT00940000157137 #9	ENSGT00940000154695 #10	ENSGT00940000157192 #11	ENSGT00530000063186.b.b #12	ENSGT01030000234570.d.a #13	ENSGT00940000157652 #14	ENSGT00530000063688.a #15	ENSGT00390000001447 #16	ENSGT00640000091496 #17	ENSGT00940000156597.b #18	ENSGT00940000159094 #20	ENSGT00940000156307.b #21	ENSGT00390000012547.b #22	ENSGT00390000004840 #23	ENSGT00940000156190.h #25	ENSGT00940000156190.g ##25	ENSGT00940000159232.h.b #27	ENSGT00940000158720.c.a	ENSGT00940000158720.c.b	ENSGT00940000159743 #31	ENSGT00940000162639 #32	ENSGT00940000154453.b.b ##33	ENSGT00940000157249 #34	ENSGT00940000155408 #35	ENSGT00940000155235 #36	ENSGT00940000161508	ENSGT01030000234607.A.b	ENSGT00530000063410.b
Ursidae	ANCESTRAL SPECIES	7	ENSGT00720000108792.B #7	ENSGT00940000155053 #8	ENSGT00940000157137 #9	ENSGT00940000154695 #10	ENSGT00940000157192 #11	ENSGT00530000063186.b.b #12	ENSGT01030000234570.d.a.c.b #13	ENSGT00940000157652 #14	ENSGT00530000063688.a #15	ENSGT00390000001447 #16	ENSGT00640000091496 #17	ENSGT00940000156597.b #18	ENSGT00940000158720.c.b.cb	ENSGT00940000159094 #20	ENSGT00940000156307.b #21	ENSGT00390000012547.b #22	ENSGT00390000004840 #23	ENSGT00940000156190.h #25	ENSGT00940000156190.g ##25	ENSGT00940000159232.h.b #27	ENSGT00940000158720.c.a	ENSGT00940000158720.c.b.bb	ENSGT00940000159743 #31	ENSGT00940000162639 #32	ENSGT00940000154453.b.b ##33	ENSGT00940000157249 #34	ENSGT00940000155408 #35	ENSGT00940000155235 #36	ENSGT00940000161508	ENSGT01030000234607.A.b	ENSGT00530000063410.b
Ursus	ANCESTRAL SPECIES	4			ENSGT00940000155053 #8	ENSGT00940000157137 #9	ENSGT00940000157192 #11	ENSGT00530000063186.b.b #12	ENSGT01030000234570.d.a.c.b #13	ENSGT00940000157652 #14	ENSGT00530000063688.a #15	ENSGT00390000001447 #16	ENSGT00640000091496 #17	ENSGT00940000156597.b #18	ENSGT00940000158720.c.b.cb	ENSGT00940000159094 #20	ENSGT00940000156307.b #21	ENSGT00390000012547.b #22	ENSGT00390000004840 #23	ENSGT00940000156190.h #25	ENSGT00940000156190.g ##25	ENSGT00940000159232.h.b #27	ENSGT00940000158720.c.a	ENSGT00940000158720.c.b.bb	ENSGT00940000159743 #31	ENSGT00940000162639 #32	ENSGT00940000154453.b.b ##33	ENSGT00940000157249 #34	ENSGT00940000155408 #35	ENSGT00940000155235 #36	ENSGT00940000161508	ENSGT01030000234607.A.b	ENSGT00530000063410.b
American black bear	MODERN SPECIES	401															PIKFYVE (ENSUAMG00000008557) #21	IDH1 (ENSUAMG00000009431) #22	C2orf80 (ENSUAMG00000009435) #23	CRYGA (ENSUAMG00000009437) #25	ENSUAMG00000009439 ##25	CRYGC (ENSUAMG00000009446) #27	CRYGD (ENSUAMG00000009448)	PLEKHM3 (ENSUAMG00000009449) #31	FZD5 (ENSUAMG00000009450) #32	ENSUAMG00000009451 ##33
Polar bear	MODERN SPECIES	142	ENSUMAG00000023308 #8	ENSUMAG00000023307	ENSUMAG00000023301 #9	ENSUMAG00000023299 #9	CPS1 (ENSUMAG00000023263) #11	LANCL1 (ENSUMAG00000023250) #12	MYL1 (ENSUMAG00000023244) #13	ACADL (ENSUMAG00000023226) #14	KANSL1L (ENSUMAG00000023220) #15	ENSUMAG00000023217 #16	UNC80 (ENSUMAG00000023174) #17	MAP2 (ENSUMAG00000023131) #18	ENSUMAG00000023115	PTH2R (ENSUMAG00000023104) #20	PIKFYVE (ENSUMAG00000022735) #21	IDH1 (ENSUMAG00000022685) #22	C2orf80 (ENSUMAG00000022683) #23	CRYGA (ENSUMAG00000022681) #25	ENSUMAG00000022680 ##25	CRYGC (ENSUMAG00000022675) #27	CRYGD (ENSUMAG00000022673)	ENSUMAG00000022672	PLEKHM3 (ENSUMAG00000022668) #31	ENSUMAG00000022665 ##33	CREB1 (ENSUMAG00000022656) #35	METTL21A (ENSUMAG00000022649) #34	KLF7 (ENSUMAG00000022629) #36	CPO (ENSUMAG00000022606)	FASTKD2 (ENSUMAG00000022590)	MDH1B (ENSUMAG00000022585)	DYTN (ENSUMAG00000022576)
Giant Panda	MODERN SPECIES	11	VWC2L (ENSAMEG00000003842) #7	SPAG16 (ENSAMEG00000008081) #8	IKZF2 (ENSAMEG00000008058) #9	ERBB4 (ENSAMEG00000007301) #10	CPS1 (ENSAMEG00000005080) #11	LANCL1 (ENSAMEG00000005046) #12	MYL1 (ENSAMEG00000005031) #13	ACADL (ENSAMEG00000004978) #14	KANSL1L (ENSAMEG00000004973) #15	ENSAMEG00000004965 #16	UNC80 (ENSAMEG00000004864) #17	MAP2 (ENSAMEG00000014971) #18	ENSAMEG00000030710	PTH2R (ENSAMEG00000015327) #20	PIKFYVE (ENSAMEG00000015268) #21	IDH1 (ENSAMEG00000015244) #22	C2orf80 (ENSAMEG00000015239) #23	CRYGA (ENSAMEG00000028445) #25	ENSAMEG00000023505 ##25	CRYGC (ENSAMEG00000025725) #27	CRYGD (ENSAMEG00000031493)	ENSAMEG00000023570	PLEKHM3 (ENSAMEG00000015216) #31	FZD5 (ENSAMEG00000015206) #32	ENSAMEG00000015175 ##33	METTL21A (ENSAMEG00000015168) #34	CREB1 (ENSAMEG00000015152) #35	KLF7 (ENSAMEG00000015148) #36	CPO (ENSAMEG00000015096)	FASTKD2 (ENSAMEG00000002917)	MDH1B (ENSAMEG00000002932)
Mustelinae	ANCESTRAL SPECIES	44	ENSGT00940000156532	ENSGT00720000108792.B #7	ENSGT00940000155053.lb #8	ENSGT00940000157137 #9	ENSGT00940000154695 #10	ENSGT00940000157192 #11	ENSGT00530000063186.b.b #12	ENSGT01030000234570.d.a #13	ENSGT00940000157652 #14	ENSGT00530000063688.a #15	ENSGT00390000001447 #16	ENSGT00640000091496 #17	ENSGT00940000156597.b #18	ENSGT00940000159094 #20	ENSGT00940000156307.b #21	ENSGT00390000012547.b #22	ENSGT00390000004840 #23	ENSGT00940000156190.h #25	ENSGT00940000159232.h.a #26	ENSGT00940000159232.h.b #27	ENSGT00940000158720.c.a	ENSGT00940000158720.c.b	ENSGT00940000159743 #31	ENSGT00940000162639 #32	ENSGT00940000154453.b.b ##33	ENSGT00940000157249 #34	ENSGT00940000155408 #35	ENSGT00940000155235 #36	ENSGT00940000161508	ENSGT01030000234607.A.b	ENSGT00530000063410.b
American mink	MODERN SPECIES	40												MAP2 (ENSNVIG00000004578) #18	ENSNVIG00000004656	PTH2R (ENSNVIG00000004696) #20	PIKFYVE (ENSNVIG00000004742) #21	IDH1 (ENSNVIG00000004795) #22	C2orf80 (ENSNVIG00000004824) #23	CRYGA (ENSNVIG00000004882) #25	ENSNVIG00000004890	CRYGB (ENSNVIG00000004897) #26	CRYGC (ENSNVIG00000004904) #27	CRYGD (ENSNVIG00000004910)	ENSNVIG00000004919	PKHM3 (ENSNVIG00000004953) #31	FZD5 (ENSNVIG00000004971) #32	ENSNVIG00000004981 ##33	ENSNVIG00000005020	METTL21A (ENSNVIG00000005027) #34	CREB1 (ENSNVIG00000005058) #35	KLF7 (ENSNVIG00000005091) #36	CBPO (ENSNVIG00000005106)
Ferret	MODERN SPECIES	265														PTH2R (ENSMPUG00000000524) #20	PIKFYVE (ENSMPUG00000000520) #21	IDH1 (ENSMPUG00000000516) #22	C2orf80 (ENSMPUG00000000512) #23	ENSMPUG00000000510	CRYGC (ENSMPUG00000000499) #27	CRYGD (ENSMPUG00000000497)	ENSMPUG00000000496	PLEKHM3 (ENSMPUG00000000492) #31	FZD5 (ENSMPUG00000018918) #32	ENSMPUG00000000489 ##33	ENSMPUG00000000487 #34	ENSMPUG00000018911	CREB1 (ENSMPUG00000000485) #35	KLF7 (ENSMPUG00000000483) #36	CPO (ENSMPUG00000000481)	FASTKD2 (ENSMPUG00000000477)	MDH1B (ENSMPUG00000000473)
Canidae	ANCESTRAL SPECIES	20	ENSGT00940000156532	ENSGT00720000108792.B #7	ENSGT00940000155053 #8	ENSGT00940000157137 #9	ENSGT00940000154695 #10	ENSGT00940000157192 #11	ENSGT00530000063186.b.b #12	ENSGT01030000234570.d.a #13	ENSGT00940000157652 #14	ENSGT00530000063688.a #15	ENSGT00390000001447 #16	ENSGT00640000091496 #17	ENSGT00940000156597.b #18	ENSGT00940000159094 #20	ENSGT00940000156307.b #21	ENSGT00390000012547.b #22	ENSGT00390000004840 #23	ENSGT00940000156190.h #25	ENSGT00940000156190.g ##25	ENSGT00940000159232.h.b #27	ENSGT00940000158720.c.a	ENSGT00940000158720.c.b	ENSGT00940000159743 #31	ENSGT00940000162639 #32	ENSGT00940000154453.b.b ##33	ENSGT00940000157249 #34	ENSGT00940000155408 #35	ENSGT00940000155235 #36	ENSGT00940000161508	ENSGT01030000234607.A.b	ENSGT00530000063410.b
Canis_lupus	ANCESTRAL SPECIES	32	ENSGT00720000108792.B #7	ENSGT00940000155053 #8	ENSGT00940000157137 #9	ENSGT00940000154695 #10	ENSGT01030000235022.a.b	ENSGT00940000157192 #11	ENSGT00530000063186.b.b #12	ENSGT01030000234570.d.a #13	ENSGT00940000157652 #14	ENSGT00530000063688.a #15	ENSGT00390000001447 #16	ENSGT00640000091496 #17	ENSGT00940000156597.b #18	ENSGT00940000159094 #20	ENSGT00940000156307.b #21	ENSGT00390000012547.b #22	ENSGT00390000004840 #23	ENSGT00940000156190.h #25	ENSGT00940000156190.g ##25	ENSGT00940000159232.h.b #27	ENSGT00940000158720.c.a	ENSGT00940000158720.c.b.hb	ENSGT00940000158720.c.b.ib	ENSGT00940000159743 #31	ENSGT00940000162639 #32	ENSGT00940000154453.b.b ##33	ENSGT00940000157249 #34	ENSGT00940000155408 #35	ENSGT00940000155235 #36	ENSGT00940000161508	ENSGT01030000234607.A.b
Dog	MODERN SPECIES	30	ENSCAFG00845018381	LANCL1 (ENSCAFG00845018274) #12	CPS1 (ENSCAFG00845017752) #11	MYL1 (ENSCAFG00845017241) #13	ENSCAFG00845017145	ACADL (ENSCAFG00845017093) #14	KANSL1L (ENSCAFG00845016965) #15	RPE (ENSCAFG00845016841) #16	ENSCAFG00845026723	UNC80 (ENSCAFG00845024595) #17	MAP2 (ENSCAFG00845024022) #18	ENSCAFG00845023938	ENSCAFG00845023908	PTH2R (ENSCAFG00845023795) #20	PIKFYVE (ENSCAFG00845023569) #21	IDH1 (ENSCAFG00845023478) #22	C37H2orf80 (ENSCAFG00845023251) #23	CRYGA (ENSCAFG00845023182) #25	CRYGB (ENSCAFG00845023028) #27	CRYGD (ENSCAFG00845022754)	ENSCAFG00845022685	PLEKHM3 (ENSCAFG00845022580) #31	FZD5 (ENSCAFG00845022521) #32	CCNYL1 (ENSCAFG00845022326) ##33	METTL21A (ENSCAFG00845022171) #34	CREB1 (ENSCAFG00845022020) #35	KLF7 (ENSCAFG00845021900) #36	CPO (ENSCAFG00845021788)	FASTKD2 (ENSCAFG00845021685)	MDH1B (ENSCAFG00845021551)	DYTN (ENSCAFG00845021457)
Dingo	MODERN SPECIES	398	ENSCAFG00020027302 #8	IKZF2 (ENSCAFG00020027304) #9	ERBB4 (ENSCAFG00020027318) #10	ENSCAFG00020027327	CPS1 (ENSCAFG00020027329) #11	LANCL1 (ENSCAFG00020027334) #12	MYL1 (ENSCAFG00020027336) #13	ACADL (ENSCAFG00020027340) #14	KANSL1L (ENSCAFG00020027344) #15	ENSCAFG00020027348 #16	UNC80 (ENSCAFG00020027361) #17	MAP2 (ENSCAFG00020027372) #18	ENSCAFG00020027373	PTH2R (ENSCAFG00020027375) #20	PIKFYVE (ENSCAFG00020027378) #21	IDH1 (ENSCAFG00020027389) #22	C2orf80 (ENSCAFG00020027395) #23	CRYGA (ENSCAFG00020027398) #25	ENSCAFG00020027399 ##25	CRYGC (ENSCAFG00020027402) #27	CRYGD (ENSCAFG00020027405)	ENSCAFG00020027409	PLEKHM3 (ENSCAFG00020027411) #31	FZD5 (ENSCAFG00020027413) #32	ENSCAFG00020027415 ##33	METTL21A (ENSCAFG00020027418) #34	CREB1 (ENSCAFG00020027420) #35	KLF7 (ENSCAFG00020027423) #36	CPO (ENSCAFG00020027425)	FASTKD2 (ENSCAFG00020027426)	MDH1B (ENSCAFG00020027429)
Red fox	MODERN SPECIES	39	ENSVVUG00000009126 #8	IKZF2 (ENSVVUG00000009142) #9	ERBB4 (ENSVVUG00000009194) #10	ENSVVUG00000009222	CPS1 (ENSVVUG00000009235) #11	LANCL1 (ENSVVUG00000009273) #12	ENSVVUG00000009278	MYL1 (ENSVVUG00000009295) #13	ACADL (ENSVVUG00000009345) #14	KANSL1L (ENSVVUG00000009477) #15	RPE (ENSVVUG00000009490) #16	UNC80 (ENSVVUG00000009630) #17	MAP2 (ENSVVUG00000009866) #18	PTH2R (ENSVVUG00000009949) #20	PIKFYVE (ENSVVUG00000010033) #21	IDH1 (ENSVVUG00000011802) #22	CUNH2orf80 (ENSVVUG00000011811) #23	CRYGA (ENSVVUG00000011815) #25	ENSVVUG00000011820 ##25	CRYGC (ENSVVUG00000011828) #27	CRYGD (ENSVVUG00000011838)	PLEKHM3 (ENSVVUG00000011844) #31	FZD5 (ENSVVUG00000011856) #32	CCNYL1 (ENSVVUG00000011860) ##33	ENSVVUG00000011880	METTL21A (ENSVVUG00000011888) #34	CREB1 (ENSVVUG00000011892) #35	KLF7 (ENSVVUG00000011906) #36	CPO (ENSVVUG00000011923)	FASTKD2 (ENSVVUG00000011933)	MDH1B (ENSVVUG00000011942)
Felidae	ANCESTRAL SPECIES	15	ENSGT00720000108792.B #7	ENSGT00940000155053 #8	ENSGT00940000157137 #9	ENSGT00940000154695 #10	ENSGT00940000157192 #11	ENSGT00530000063186.b.b #12	ENSGT01030000234570.d.a #13	ENSGT00940000157652 #14	ENSGT00530000063688.a #15	ENSGT00390000001447 #16	ENSGT00640000091496 #17	ENSGT00940000156597.b #18	ENSGT00940000158720.c.b.`b	ENSGT00940000159094 #20	ENSGT00940000156307.b #21	ENSGT00390000012547.b #22	ENSGT00390000004840 #23	ENSGT00940000156190.h #25	ENSGT00940000159232.h.a #26	ENSGT00940000159232.h.b #27	ENSGT00940000158720.c.a	ENSGT00940000158720.c.b.ab	ENSGT00940000159743 #31	ENSGT00940000162639 #32	ENSGT00940000154453.b.b ##33	ENSGT00940000157249 #34	ENSGT00940000155408 #35	ENSGT00940000155235 #36	ENSGT00940000161508	ENSGT01030000234607.A.b	ENSGT00530000063410.b
Panthera	ANCESTRAL SPECIES	9	ENSGT00720000108792.B #7	ENSGT00940000155053 #8	ENSGT00940000157137 #9	ENSGT00940000154695 #10	ENSGT00940000157192 #11	ENSGT00530000063186.b.b #12	ENSGT01030000234570.d.a #13	ENSGT00940000157652 #14	ENSGT00530000063688.a #15	ENSGT00390000001447 #16	ENSGT00640000091496 #17	ENSGT00940000156597.b #18	ENSGT00940000158720.c.b.`b	ENSGT00940000159094 #20	ENSGT00940000156307.b #21	ENSGT00390000012547.b #22	ENSGT00390000004840 #23	ENSGT00940000156190.h #25	ENSGT00940000159232.h.a #26	ENSGT00940000159232.h.b #27	ENSGT00940000158720.c.a	ENSGT00940000158720.c.b.ab	ENSGT00940000159743 #31	ENSGT00940000162639 #32	ENSGT00940000154453.b.b ##33	ENSGT00940000157249 #34	ENSGT00940000155408 #35	ENSGT00940000155235 #36	ENSGT00940000161508	ENSGT01030000234607.A.b	ENSGT00530000063410.b
Tiger	MODERN SPECIES	313															PIKFYVE (ENSPTIG00000011629) #21	IDH1 (ENSPTIG00000011718) #22	C2orf80 (ENSPTIG00000011733) #23	CRYGA (ENSPTIG00000011747) #25	CRYGB (ENSPTIG00000011753) #26	CRYGC (ENSPTIG00000011760) #27	CRYGD (ENSPTIG00000011767)	PLEKHM3 (ENSPTIG00000011775) #31	ENSPTIG00000011797 ##33	METTL21A (ENSPTIG00000011823) #34	CREB1 (ENSPTIG00000011848) #35	KLF7 (ENSPTIG00000011869) #36	CPO (ENSPTIG00000011884)	FASTKD2 (ENSPTIG00000011891)	MDH1B (ENSPTIG00000011902)	DYTN (ENSPTIG00000011914)	FAM237A (ENSPTIG00000011920)
Panthera_a	ANCESTRAL SPECIES	6	ENSGT00940000156532	ENSGT00720000108792.B #7	ENSGT00940000155053 #8	ENSGT00940000157137 #9	ENSGT00940000154695 #10	ENSGT00940000157192 #11	ENSGT00530000063186.b.b #12	ENSGT01030000234570.d.a #13	ENSGT00940000157652 #14	ENSGT00530000063688.a #15	ENSGT00390000001447 #16	ENSGT00640000091496 #17	ENSGT00940000156597.b #18	ENSGT00940000159094 #20	ENSGT00940000156307.b #21	ENSGT00390000012547.b #22	ENSGT00390000004840 #23	ENSGT00940000156190.h #25	ENSGT00940000159232.h.a #26	ENSGT00940000159232.h.b #27	ENSGT00940000158720.c.a	ENSGT00940000158720.c.b.`b	ENSGT00940000158720.c.b.ab	ENSGT00940000159743 #31	ENSGT00940000162639 #32	ENSGT00940000154453.b.b ##33	ENSGT00940000157249 #34	ENSGT00940000155408 #35	ENSGT00940000155235 #36	ENSGT00940000161508	ENSGT01030000234607.A.b
leopard	MODERN SPECIES	12	VWC2L (ENSPPRG00000000428) #7	SPAG16 (ENSPPRG00000000338) #8	IKZF2 (ENSPPRG00000022962) #9	ERBB4 (ENSPPRG00000021619) #10	CPS1 (ENSPPRG00000017782) #11	LANCL1 (ENSPPRG00000014545) #12	MYL1 (ENSPPRG00000014175) #13	ACADL (ENSPPRG00000014114) #14	KANSL1L (ENSPPRG00000013126) #15	ENSPPRG00000012984 #16	UNC80 (ENSPPRG00000012259) #17	MAP2 (ENSPPRG00000010961) #18	ENSPPRG00000009415	PTH2R (ENSPPRG00000009093) #20	PIKFYVE (ENSPPRG00000008871) #21	IDH1 (ENSPPRG00000008143) #22	C2orf80 (ENSPPRG00000007937) #23	CRYGA (ENSPPRG00000007869) #25	ENSPPRG00000007792 ##25	CRYGC (ENSPPRG00000007729) #27	CRYGD (ENSPPRG00000007631)	ENSPPRG00000007573	PLEKHM3 (ENSPPRG00000007268) #31	ENSPPRG00000007043 ##33	METTL21A (ENSPPRG00000006796) #34	CREB1 (ENSPPRG00000006712) #35	KLF7 (ENSPPRG00000006377) #36	CPO (ENSPPRG00000006106)	FASTKD2 (ENSPPRG00000006075)	MDH1B (ENSPPRG00000005932)	DYTN (ENSPPRG00000005491)
lion	MODERN SPECIES	8	SPAG16 (ENSPLOG00000022723) #8	IKZF2 (ENSPLOG00000022726) #9	ERBB4 (ENSPLOG00000022728) #10	CPS1 (ENSPLOG00000022730) #11	LANCL1 (ENSPLOG00000022731) #12	MYL1 (ENSPLOG00000022732) #13	ACADL (ENSPLOG00000005365) #14	KANSL1L (ENSPLOG00000005446) #15	ENSPLOG00000005504 #16	UNC80 (ENSPLOG00000005686) #17	MAP2 (ENSPLOG00000006126) #18	ENSPLOG00000006284	ENSPLOG00000006368	PTH2R (ENSPLOG00000006401) #20	PIKFYVE (ENSPLOG00000006516) #21	IDH1 (ENSPLOG00000006638) #22	C2orf80 (ENSPLOG00000006690) #23	CRYGA (ENSPLOG00000006776) #25	CRYGB (ENSPLOG00000006808) #26	CRYGC (ENSPLOG00000006841) #27	ENSPLOG00000006864	ENSPLOG00000006884	PLEKHM3 (ENSPLOG00000006915) #31	FZD5 (ENSPLOG00000006965) #32	ENSPLOG00000006998 ##33	METTL21A (ENSPLOG00000007061) #34	CREB1 (ENSPLOG00000007090) #35	KLF7 (ENSPLOG00000007130) #36	CPO (ENSPLOG00000007242)	FASTKD2 (ENSPLOG00000007345)	MDH1B (ENSPLOG00000007375)
Cat	MODERN SPECIES	239	SPAG16 (ENSFCAG00000015155) #8	ENSFCAG00000048148	IKZF2 (ENSFCAG00000036602) #9	ERBB4 (ENSFCAG00000027902) #10	CPS1 (ENSFCAG00000027460) #11	LANCL1 (ENSFCAG00000023129) #12	MYL1 (ENSFCAG00000036039) #13	ACADL (ENSFCAG00000024046) #14	KANSL1L (ENSFCAG00000027585) #15	ENSFCAG00000009135 #16	UNC80 (ENSFCAG00000031298) #17	MAP2 (ENSFCAG00000024249) #18	ENSFCAG00000041864	PTH2R (ENSFCAG00000003978) #20	PIKFYVE (ENSFCAG00000003977) #21	IDH1 (ENSFCAG00000003976) #22	CC1H2orf80 (ENSFCAG00000003974) #23	CRYGA (ENSFCAG00000003973) #25	CRYGB (ENSFCAG00000003972) #26	CRYGC (ENSFCAG00000040128) #27	CRYGD (ENSFCAG00000042141)	ENSFCAG00000046445	PLEKHM3 (ENSFCAG00000002716) #31	FZD5 (ENSFCAG00000037566) #32	ENSFCAG00000039577	CCNYL1 (ENSFCAG00000028003) ##33	METTL21A (ENSFCAG00000035900) #34	CREB1 (ENSFCAG00000008220) #35	KLF7 (ENSFCAG00000002514) #36	CPO (ENSFCAG00000002513)	FASTKD2 (ENSFCAG00000015373)
Laurasiatheria_c	ANCESTRAL SPECIES	18	ENSGT00940000156532	ENSGT00720000108792.B #7	ENSGT00940000155053 #8	ENSGT00940000157137 #9	ENSGT00940000154695 #10	ENSGT00940000157192 #11	ENSGT00530000063186.b.b #12	ENSGT01030000234570.d.a #13	ENSGT00940000157652.f #14	ENSGT00530000063688.a #15	ENSGT00390000001447 #16	ENSGT00640000091496 #17	ENSGT00940000156597.b #18	ENSGT00940000159094 #20	ENSGT00940000156307.b #21	ENSGT00390000012547.b #22	ENSGT00390000004840 #23	ENSGT00940000156190.h #25	ENSGT00940000159232.h.a #26	ENSGT00940000156190.g ##25	ENSGT00940000159232.h.b #27	ENSGT00940000158720.c.a	ENSGT00940000158720.c.b	ENSGT00940000159743 #31	ENSGT00940000162639 #32	ENSGT00940000154453.b.a.b ##33	ENSGT00940000157249 #34	ENSGT00940000155408 #35	ENSGT00940000155235 #36	ENSGT00940000161508	ENSGT01030000234607.A.b
Chiroptera	ANCESTRAL SPECIES	11	ENSGT00940000156532	ENSGT00720000108792.B #7	ENSGT00940000155053 #8	ENSGT00940000157137 #9	ENSGT00940000154695 #10	ENSGT00940000157192 #11	ENSGT00530000063186.b.b #12	ENSGT01030000234570.d.a #13	ENSGT00940000157652.f #14	ENSGT00530000063688.a #15	ENSGT00390000001447 #16	ENSGT00640000091496 #17	ENSGT00940000156597.b #18	ENSGT00940000159094 #20	ENSGT00940000156307.b #21	ENSGT00390000012547.b #22	ENSGT00390000004840 #23	ENSGT00940000156190.h #25	ENSGT00940000159232.h.a #26	ENSGT00940000159232.h.b #27	ENSGT00940000158720.c.a	ENSGT00940000158720.c.b	ENSGT00940000159743 #31	ENSGT00940000162639 #32	ENSGT00940000154453.b.a.b ##33	ENSGT00940000154453.b.a.a #33	ENSGT00940000157249 #34	ENSGT00940000155408 #35	ENSGT00940000155235 #36	ENSGT00940000161508	ENSGT01030000234607.A.b
Microchiroptera	ANCESTRAL SPECIES	15	ENSGT00940000156532	ENSGT00720000108792.B #7	ENSGT00940000155053 #8	ENSGT00940000157137 #9	ENSGT00940000154695 #10	ENSGT00940000157192 #11	ENSGT00530000063186.b.b #12	ENSGT01030000234570.d.a #13	ENSGT00940000157652.f #14	ENSGT00530000063688.a #15	ENSGT00390000001447 #16	ENSGT00640000091496 #17	ENSGT00940000156597.b #18	ENSGT00940000159094 #20	ENSGT00940000156307.b #21	ENSGT00390000012547.b #22	ENSGT00390000004840 #23	ENSGT00940000159232.h.a #26	ENSGT00940000159232.h.b #27	ENSGT00940000158720.c.b	ENSGT00940000159743 #31	ENSGT00940000162639 #32	ENSGT00940000154453.b.a.b ##33	ENSGT00940000154453.b.a.a #33	ENSGT00940000157249 #34	ENSGT00940000155408 #35	ENSGT00940000155235 #36	ENSGT00940000161508	ENSGT01030000234607.A.b	ENSGT00530000063410.b	ENSGT00940000162403
Microbat	DUPLICATION
Microbat	MODERN SPECIES	131																ENSMLUG00000028815 #22
Microbat	MODERN SPECIES	940	IKZF2 (ENSMLUG00000012494) #9	ENSMLUG00000023988 #10	ENSMLUG00000022171 #10	ENSMLUG00000016092 #10	CPS1 (ENSMLUG00000015090) #11	LANCL1 (ENSMLUG00000002650) #12	MYL1 (ENSMLUG00000002641) #13	ENSMLUG00000017730	ACADL (ENSMLUG00000014508) #14	KANSL1L (ENSMLUG00000014487) #15	ENSMLUG00000014477 #16	UNC80 (ENSMLUG00000014442) #17	MAP2 (ENSMLUG00000014420) #18	PTH2R (ENSMLUG00000008536) #20	PIKFYVE (ENSMLUG00000000897) #21	ENSMLUG00000000891 #22	C2orf80 (ENSMLUG00000025398) #23	CRYGC (ENSMLUG00000015767) #27	ENSMLUG00000028817	PLEKHM3 (ENSMLUG00000011905) #31	ENSMLUG00000016122 #33	METTL21A (ENSMLUG00000015747) #34	CREB1 (ENSMLUG00000016119) #35	KLF7 (ENSMLUG00000009436) #36	CPO (ENSMLUG00000009428)	FASTKD2 (ENSMLUG00000009411)	MDH1B (ENSMLUG00000009390)	DYTN (ENSMLUG00000028179)	FAM237A (ENSMLUG00000030140)	ADAM23 (ENSMLUG00000009364)	ZDBF2 (ENSMLUG00000014265)
Greater horseshoe bat	MODERN SPECIES	26	ENSRFEG00010017533	ENSRFEG00010017581	ERBB4 (ENSRFEG00010017623) #10	ENSRFEG00010018450	CPS1 (ENSRFEG00010018496) #11	LANCL1 (ENSRFEG00010018871) #12	MYL1 (ENSRFEG00010018919) #13	ACADL (ENSRFEG00010019011) #14	KANSL1L (ENSRFEG00010019059) #15	ENSRFEG00010019086 #16	UNC80 (ENSRFEG00010019184) #17	ENSRFEG00010019323	MAP2 (ENSRFEG00010019384) #18	PTH2R (ENSRFEG00010019527) #20	PIKFYVE (ENSRFEG00010019609) #21	IDH1 (ENSRFEG00010019714) #22	C2orf80 (ENSRFEG00010019768) #23	CRYGB (ENSRFEG00010019933) #26	CRYGC (ENSRFEG00010019976) #27	PLEKHM3 (ENSRFEG00010020009) #31	FZD5 (ENSRFEG00010020064) #32	CCNYL1 (ENSRFEG00010020079) ##33	METTL21A (ENSRFEG00010020119) #34	ENSRFEG00010020167	CREB1 (ENSRFEG00010020193) #35	KLF7 (ENSRFEG00010010310) #36	CPO (ENSRFEG00010010427)	FASTKD2 (ENSRFEG00010010475)	MDH1B (ENSRFEG00010010537)	DYTN (ENSRFEG00010010740)	FAM237A (ENSRFEG00010010918)
Megabat	MODERN SPECIES	2112														PTH2R (ENSPVAG00000008309) #20	PIKFYVE (ENSPVAG00000008304) #21	IDH1 (ENSPVAG00000008301) #22	C2orf80 (ENSPVAG00000008300) #23	CRYGA (ENSPVAG00000008299) #25
Equus	ANCESTRAL SPECIES	18														ENSGT00940000159094 #20	ENSGT00940000156307.b #21	ENSGT00390000012547.b #22	ENSGT00390000004840 #23	ENSGT00940000156190.h #25	ENSGT00940000159232.h.a #26	ENSGT00940000156190.g ##25	ENSGT00940000159232.h.b #27	ENSGT00940000159743 #31	ENSGT00950000186238	ENSGT00940000162639 #32	ENSGT00940000154453.b.a.b ##33	ENSGT00940000157249 #34	ENSGT00940000155408 #35	ENSGT00940000155235 #36	ENSGT01030000234607.A.b	ENSGT00530000063410.b	ENSGT00940000162403
Horse	MODERN SPECIES	9														PTH2R (ENSECAG00000014395) #20	PIKFYVE (ENSECAG00000021430) #21	IDH1 (ENSECAG00000011931) #22	C18H2orf80 (ENSECAG00000011588) #23	CRYGB (ENSECAG00000010883) #25	ENSECAG00000049516 ##25	CRYGA (ENSECAG00000009588) #27	ENSECAG00000039306	FZD5 (ENSECAG00000007309) #32	PLEKHM3 (ENSECAG00000008108) #31	METTL21A (ENSECAG00000017536) #34	CREB1 (ENSECAG00000013667) #35	KLF7 (ENSECAG00000012215) #36	FASTKD2 (ENSECAG00000008822)	MDH1B (ENSECAG00000007491)	DYTN (ENSECAG00000006820)	FAM237A (ENSECAG00000050449)	ADAM23 (ENSECAG00000018514)
Donkey	MODERN SPECIES	24	PPP2R3B (ENSEASG00005007065)	GTPBP6 (ENSEASG00005007092)	ENSEASG00005007100	ENSEASG00005014354	ENSEASG00005038034	ENSEASG00005007510	ENSEASG00005029433	ENSEASG00005031510	ENSEASG00005013062	ENSEASG00005028249	ENSEASG00005033559	ENSEASG00005028429	ENSEASG00005031264	ENSEASG00005003104 #20	PIKFYVE (ENSEASG00005003072) #21	IDH1 (ENSEASG00005003064) #22	C2orf80 (ENSEASG00005003060) #23	ENSEASG00005033359 #25	CRYGB (ENSEASG00005028155) #26	ENSEASG00005028742 #25	PLEKHM3 (ENSEASG00005003046) #31	ENSEASG00005003042	FZD5 (ENSEASG00005003041) #32	CCNYL1 (ENSEASG00005003014) ##33	ENSEASG00005024979 #34	CREB1 (ENSEASG00005002983) #35	KLF7 (ENSEASG00005002973) #36	FASTKD2 (ENSEASG00005002958)	MDH1B (ENSEASG00005002948)	DYTN (ENSEASG00005002938)	FAM237A (ENSEASG00005002935)
Atlantogenata	ANCESTRAL SPECIES	9	ENSGT00940000156532	ENSGT00720000108792.B #7	ENSGT00940000155053 #8	ENSGT00940000157137 #9	ENSGT00940000154695 #10	ENSGT00940000157192 #11	ENSGT00530000063186.b.b #12	ENSGT01030000234570.d.a #13	ENSGT00940000157652 #14	ENSGT00530000063688.a #15	ENSGT00390000001447 #16	ENSGT00640000091496 #17	ENSGT00940000156597.b #18	ENSGT00940000159094 #20	ENSGT00940000156307.b #21	ENSGT00390000012547.b #22	ENSGT00390000004840 #23	ENSGT00940000158720.c.b	ENSGT00940000159743 #31	ENSGT00940000162639 #32	ENSGT00940000154453.b.a.b ##33	ENSGT00940000154453.b.b ##33	ENSGT00940000157249 #34	ENSGT00940000155408 #35	ENSGT00940000155235 #36	ENSGT00940000161508	ENSGT01030000234607.A.b	ENSGT00530000063410.b	ENSGT00940000162403	ENSGT00940000158781	ENSGT00440000037606.b
Xenarthra	ANCESTRAL SPECIES																	ENSGT00390000012547.b #22
Sloth	MODERN SPECIES	3168																IDH1 (ENSCHOG00000004574) #22
Afrotheria	ANCESTRAL SPECIES	1	ENSGT00940000156532	ENSGT00720000108792.B #7	ENSGT00940000155053 #8	ENSGT00940000157137 #9	ENSGT00940000154695 #10	ENSGT00940000157192 #11	ENSGT00530000063186.b.b #12	ENSGT01030000234570.d.a #13	ENSGT00940000157652 #14	ENSGT00530000063688.a #15	ENSGT00390000001447 #16	ENSGT00640000091496 #17	ENSGT00940000156597.b #18	ENSGT00940000159094 #20	ENSGT00940000156307.b #21	ENSGT00390000012547.b #22	ENSGT00390000004840 #23	ENSGT00940000159232.h.a #26	ENSGT00940000159743 #31	ENSGT00940000162639 #32	ENSGT00940000154453.b.b ##33	ENSGT00940000157249 #34	ENSGT00940000155408 #35	ENSGT00940000155235 #36	ENSGT00940000161508	ENSGT01030000234607.A.b	ENSGT00530000063410.b	ENSGT00940000162403	ENSGT00940000158781	ENSGT00440000037606.b	ENSGT00940000160642
Afrotheria_a	ANCESTRAL SPECIES	1	ENSGT00940000156532	ENSGT00720000108792.B #7	ENSGT00940000155053 #8	ENSGT00940000157137 #9	ENSGT00940000154695 #10	ENSGT00940000157192 #11	ENSGT00530000063186.b.b #12	ENSGT01030000234570.d.a #13	ENSGT00940000157652 #14	ENSGT00530000063688.a #15	ENSGT00390000001447 #16	ENSGT00640000091496 #17	ENSGT00940000156597.b #18	ENSGT00940000159094 #20	ENSGT00940000156307.b #21	ENSGT00390000012547.b #22	ENSGT00390000004840 #23	ENSGT00940000159232.h.a #26	ENSGT00940000159743 #31	ENSGT00940000162639 #32	ENSGT00940000154453.b.b ##33	ENSGT00940000157249 #34	ENSGT00940000155408 #35	ENSGT00940000155235 #36	ENSGT00940000161508	ENSGT01030000234607.A.b	ENSGT00530000063410.b	ENSGT00940000162403	ENSGT00940000158781	ENSGT00440000037606.b	ENSGT00940000160642
Elephant	MODERN SPECIES	301	ENSLAFG00000010985 #8	IKZF2 (ENSLAFG00000008236) #9	ENSLAFG00000032609 #10	ENSLAFG00000030559 #10	ENSLAFG00000006617 #10	CPS1 (ENSLAFG00000005505) #11	LANCL1 (ENSLAFG00000018697) #12	MYL1 (ENSLAFG00000005451) #13	ACADL (ENSLAFG00000015099) #14	KANSL1L (ENSLAFG00000014134) #15	ENSLAFG00000014127 #16	UNC80 (ENSLAFG00000008065) #17	MAP2 (ENSLAFG00000027965) #18	PTH2R (ENSLAFG00000009988) #20	PIKFYVE (ENSLAFG00000016887) #21	IDH1 (ENSLAFG00000016882) #22	C2orf80 (ENSLAFG00000016878) #23	ENSLAFG00000016874 #26	ENSLAFG00000016869 #26	PLEKHM3 (ENSLAFG00000030211) #31	FZD5 (ENSLAFG00000017105) #32	ENSLAFG00000021558 ##33	METTL21A (ENSLAFG00000017103) #34	CREB1 (ENSLAFG00000013257) #35	KLF7 (ENSLAFG00000005822) #36	CPO (ENSLAFG00000009772)	FASTKD2 (ENSLAFG00000005198)	MDH1B (ENSLAFG00000015578)	DYTN (ENSLAFG00000032161)	ADAM23 (ENSLAFG00000014452)	ZDBF2 (ENSLAFG00000014253)
Hyrax	MODERN SPECIES	9038																IDH1 (ENSPCAG00000010628) #22
Tenrec	MODERN SPECIES	17285																IDH1 (ENSETEG00000016494) #22
Marsupialia	ANCESTRAL SPECIES	8	ENSGT00940000156532	ENSGT00720000108792.B #7	ENSGT00940000155053 #8	ENSGT00940000157137 #9	ENSGT00940000154695 #10	ENSGT00940000157192 #11	ENSGT00530000063186.b.b #12	ENSGT01030000234570.d.a #13	ENSGT00940000157652 #14	ENSGT00530000063688.a #15	ENSGT00390000001447 #16	ENSGT00640000091496 #17	ENSGT00940000156597.b #18	ENSGT00940000159094 #20	ENSGT00940000156307.b #21	ENSGT00390000012547.b #22	ENSGT00960000187202	ENSGT00390000004840 #23	ENSGT00940000156190.i #25	ENSGT00940000159232.e #26	ENSGT00940000159232.f #26	ENSGT00940000158720.a	ENSGT00940000163272 #19	ENSGT00940000158720.b	ENSGT00940000159743 #31	ENSGT00940000162639 #32	ENSGT00940000154453.b #33	ENSGT00940000157249 #34	ENSGT00940000155408 #35	ENSGT00940000155235 #36	ENSGT00940000161508
Marsupialia_b	ANCESTRAL SPECIES	7	ENSGT00940000156532	ENSGT00720000108792.B #7	ENSGT00940000155053 #8	ENSGT00940000157137 #9	ENSGT00940000154695 #10	ENSGT00940000157192 #11	ENSGT00530000063186.b.b #12	ENSGT01030000234570.d.a #13	ENSGT00940000157652 #14	ENSGT00530000063688.a #15	ENSGT00390000001447 #16	ENSGT00640000091496 #17	ENSGT00940000156597.b #18	ENSGT00940000159094 #20	ENSGT00940000156307.b #21	ENSGT00390000012547.b #22	ENSGT00960000187202	ENSGT00390000004840 #23	ENSGT00940000156190.j #25	ENSGT00940000156190.i #25	ENSGT00940000159232.e #26	ENSGT00940000159232.f #26	ENSGT00940000158720.a	ENSGT00940000163272 #19	ENSGT00940000158720.b	ENSGT00940000159743 #31	ENSGT00940000162639 #32	ENSGT00940000154453.b #33	ENSGT00940000157249 #34	ENSGT00940000155408 #35	ENSGT00940000155235 #36
Diprotodontia	ANCESTRAL SPECIES	31	ENSGT00940000156532	ENSGT00720000108792.B #7	ENSGT00940000155053 #8	ENSGT00940000157137 #9	ENSGT00940000154695 #10	ENSGT00940000157192 #11	ENSGT00530000063186.b.b #12	ENSGT01030000234570.d.a #13	ENSGT00940000157652 #14	ENSGT00530000063688.a #15	ENSGT00390000001447 #16	ENSGT00640000091496 #17	ENSGT00940000156597.b #18	ENSGT00940000159094 #20	ENSGT00940000156307.b #21	ENSGT00390000012547.b #22	ENSGT00960000187202	ENSGT00390000004840 #23	ENSGT00940000156190.j #25	ENSGT00940000156190.i #25	ENSGT00940000159232.e #26	ENSGT00940000159232.f #26	ENSGT00940000158720.a	ENSGT00940000158720.b	ENSGT00940000159743 #31	ENSGT00940000162639 #32	ENSGT00940000154453.b #33	ENSGT00940000157249 #34	ENSGT00940000155408 #35	ENSGT00940000155235 #36	ENSGT00940000161508
Diprotodontia_a	ANCESTRAL SPECIES	30	ENSGT00940000156532	ENSGT00720000108792.B #7	ENSGT00940000155053 #8	ENSGT00940000157137 #9	ENSGT00940000154695 #10	ENSGT00940000157192 #11	ENSGT00530000063186.b.b #12	ENSGT01030000234570.d.a #13	ENSGT00940000157652 #14	ENSGT00530000063688.a #15	ENSGT00390000001447 #16	ENSGT00640000091496 #17	ENSGT00940000156597.b #18	ENSGT00940000159094 #20	ENSGT00940000156307.b #21	ENSGT00390000012547.b #22	ENSGT00960000187202	ENSGT00390000004840 #23	ENSGT00940000156190.j #25	ENSGT00940000156190.i #25	ENSGT00940000159232.e #26	ENSGT00940000159232.f #26	ENSGT00940000158720.a	ENSGT00940000158720.b	ENSGT00940000159743 #31	ENSGT00940000162639 #32	ENSGT00940000154453.b #33	ENSGT00940000157249 #34	ENSGT00940000155408 #35	ENSGT00940000155235 #36	ENSGT00940000161508
koala	MODERN SPECIES	132		ENSPCIG00000000504 #8	IKZF2 (ENSPCIG00000000561) #9	ERBB4 (ENSPCIG00000024251) #10	CPS1 (ENSPCIG00000013468) #11	LANCL1 (ENSPCIG00000013464) #12	MYL1 (ENSPCIG00000013463) #13	ACADL (ENSPCIG00000013461) #14	KANSL1L (ENSPCIG00000013458) #15	ENSPCIG00000013457 #16	UNC80 (ENSPCIG00000013438) #17	MAP2 (ENSPCIG00000035392) #18	ENSPCIG00000004335	PTH2R (ENSPCIG00000037126) #20	PIKFYVE (ENSPCIG00000012094) #21	IDH1 (ENSPCIG00000012090) #22	ENSPCIG00000012086	ENSPCIG00000012083 #23	ENSPCIG00000012080 #25	ENSPCIG00000012076 #25	ENSPCIG00000034463 #26	ENSPCIG00000036210 #26	ENSPCIG00000031919	ENSPCIG00000035095	PLEKHM3 (ENSPCIG00000012063) #31	FZD5 (ENSPCIG00000012060) #32	ENSPCIG00000012056 #33	METTL21A (ENSPCIG00000018395) #34	CREB1 (ENSPCIG00000032499) #35	KLF7 (ENSPCIG00000018773) #36	CPO (ENSPCIG00000018775)
Common wonbat	MODERN SPECIES	1038	ENSVURG00010003372 #8	ENSVURG00010003388	IKZF2 (ENSVURG00010003422) #9	ERBB4 (ENSVURG00010003549) #10	CPS1 (ENSVURG00010003725) #11	LANCL1 (ENSVURG00010003810) #12	MYL1 (ENSVURG00010003828) #13	ACADL (ENSVURG00010003860) #14	KANSL1L (ENSVURG00010003874) #15	ENSVURG00010003917 #16	UNC80 (ENSVURG00010003993) #17	ENSVURG00010004218 #18	PTH2R (ENSVURG00010004279) #20	ENSVURG00010004334	PIKFYVE (ENSVURG00010004366) #21	IDH1 (ENSVURG00010004499) #22	C2orf80 (ENSVURG00010004523) #23	CRYGA (ENSVURG00010004554) #25	ENSVURG00010004566	ENSVURG00010004571 #26	ENSVURG00010004579 #26	ENSVURG00010004591	ENSVURG00010004601	PLEKHM3 (ENSVURG00010004626) #31	FZD5 (ENSVURG00010004678) #32	ENSVURG00010004692 #33	METTL21A (ENSVURG00010004735) #34	CREB1 (ENSVURG00010004759) #35	KLF7 (ENSVURG00010004801) #36	ENSVURG00010004815	CPO (ENSVURG00010004833)
Wallaby	MODERN SPECIES	4559																IDH1 (ENSMEUG00000009863) #22
Tasmanian devil	MODERN SPECIES	2	ENSSHAG00000025155 #8	ENSSHAG00000004079 #8	IKZF2 (ENSSHAG00000001687) #9	ERBB4 (ENSSHAG00000014078) #10	ENSSHAG00000025581	CPS1 (ENSSHAG00000017472) #11	LANCL1 (ENSSHAG00000021780) #12	MYL1 (ENSSHAG00000017951) #13	ACADL (ENSSHAG00000024844) #14	KANSL1L (ENSSHAG00000001897) #15	ENSSHAG00000025167 #16	UNC80 (ENSSHAG00000029699) #17	MAP2 (ENSSHAG00000008479) #18	ENSSHAG00000003999 #20	PIKFYVE (ENSSHAG00000009450) #21	IDH1 (ENSSHAG00000010387) #22	ENSSHAG00000026792	ENSSHAG00000021554 #25	ENSSHAG00000028589 #25	ENSSHAG00000026286 #26	ENSSHAG00000011184 #26	CRYGD (ENSSHAG00000028541)	ENSSHAG00000011379 #19	PLEKHM3 (ENSSHAG00000011794) #31	FZD5 (ENSSHAG00000027632) #32	ENSSHAG00000013219 #33	METTL21A (ENSSHAG00000013828) #34	CREB1 (ENSSHAG00000013905) #35	KLF7 (ENSSHAG00000015861) #36	CPO (ENSSHAG00000026232)	ENSSHAG00000022521
Opossum	MODERN SPECIES	6	ENSMODG00000015663	ENSMODG00000025486 #8	IKZF2 (ENSMODG00000015683) #9	ERBB4 (ENSMODG00000015755) #10	ENSMODG00000028496	CPS1 (ENSMODG00000015793) #11	LANCL1 (ENSMODG00000015804) #12	MYL1 (ENSMODG00000015807) #13	ACADL (ENSMODG00000015819) #14	KANSL1L (ENSMODG00000015823) #15	ENSMODG00000015827 #16	UNC80 (ENSMODG00000015849) #17	ENSMODG00000049580 #18	PTH2R (ENSMODG00000015872) #20	PIKFYVE (ENSMODG00000015918) #21	IDH1 (ENSMODG00000015928) #22	ENSMODG00000041817	ENSMODG00000015937 #23	CRYGA (ENSMODG00000015939) #25	ENSMODG00000049632	ENSMODG00000044652 #26	CRYGD (ENSMODG00000051256)	ENSMODG00000024830 #19	PLEKHM3 (ENSMODG00000027343) #31	FZD5 (ENSMODG00000015949) #32	ENSMODG00000015954 #33	METTL21A (ENSMODG00000015959) #34	CREB1 (ENSMODG00000015970) #35	KLF7 (ENSMODG00000015982) #36	CPO (ENSMODG00000015987)	FASTKD2 (ENSMODG00000015997)
Platypus	MODERN SPECIES	18	ENSOANG00000043407	GREB1L (ENSOANG00000008699)	ORNANAV1R3203 (ENSOANG00000043654)	PLEKHM3 (ENSOANG00000041154) #31	ENSOANG00000050596 #32	ENSOANG00000013244 #33	VSTM2A (ENSOANG00000040691)	ENSOANG00000043500	USP14 (ENSOANG00000007418)	ROCK1 (ENSOANG00000038524)	ENSOANG00000038220	ABRAXAS1 (ENSOANG00000032008)	CREB1 (ENSOANG00000005816) #35	ENSOANG00000001408 #26	ENSOANG00000041548 #26	IDH1 (ENSOANG00000049618) #22	PTH2R (ENSOANG00000008008) #20	PIKFYVE (ENSOANG00000008007) #21	MAP2 (ENSOANG00000007871) #18	UNC80 (ENSOANG00000028875) #17	ENSOANG00000041439 #16	KANSL1L (ENSOANG00000000302) #15	ACADL (ENSOANG00000013488) #14	MYL1 (ENSOANG00000006278) #13	LANCL1 (ENSOANG00000011057) #12	CPS1 (ENSOANG00000011059) #11	ERBB4 (ENSOANG00000007021) #10	ENSOANG00000015675	MREG (ENSOANG00000036014)	FN1 (ENSOANG00000006836)	ATIC (ENSOANG00000005769)
Sauria	ANCESTRAL SPECIES	32	ENSGT00940000155053 #8	ENSGT00940000157137 #9	ENSGT00940000154695 #10	ENSGT00940000157192 #11	ENSGT00530000063186.b.b #12	ENSGT01030000234570.d.a #13	ENSGT00940000157652 #14	ENSGT00530000063688.a #15	ENSGT00390000001447 #16	ENSGT01030000235330	ENSGT00640000091496 #17	ENSGT00940000156597.b #18	ENSGT00940000159094 #20	ENSGT00940000156307.b #21	ENSGT00940000177631	ENSGT00390000012547.b #22	ENSGT00960000187202	ENSGT00390000004840 #23	ENSGT00940000156190 #25	ENSGT00940000159232 #26	ENSGT00940000163494.a.b.g.b	ENSGT00940000159743 #31	ENSGT00940000161191.B	ENSGT00940000154453.b #33	ENSGT00940000157249 #34	ENSGT00940000155408 #35	ENSGT00940000155235 #36	ENSGT00940000161508	ENSGT01030000234607.A.b	ENSGT00530000063410.b	ENSGT00940000162403
Lepidosauria	ANCESTRAL SPECIES	7	ENSGT00720000108792.B #7	ENSGT00940000155053 #8	ENSGT00940000157137 #9	ENSGT00940000154695 #10	ENSGT00940000157192 #11	ENSGT00990000210950	ENSGT00530000063186.b.b #12	ENSGT01030000234570.d.a #13	ENSGT00940000157652 #14	ENSGT00530000063688.a #15	ENSGT00390000001447 #16	ENSGT00640000091496 #17	ENSGT00940000156597.b #18	ENSGT00940000159094 #20	ENSGT00940000156307.b #21	ENSGT00390000012547.b #22	ENSGT00940000159743 #31	ENSGT00940000161191.B	ENSGT00940000154453.b #33	ENSGT00940000157249 #34	ENSGT00940000155408 #35	ENSGT00940000155235 #36	ENSGT01030000234607.A.b	ENSGT00530000063410.b	ENSGT00940000162403	ENSGT00390000015769.B	ENSGT00940000158781	ENSGT00440000037606.b	ENSGT00940000160642	ENSGT00950000183014.f.a	ENSGT00940000153514.b
Episquamata	ANCESTRAL SPECIES		ENSGT00720000108792.B #7	ENSGT00940000155053 #8	ENSGT00940000157137 #9	ENSGT00940000154695 #10	ENSGT00940000157192 #11	ENSGT00990000210950	ENSGT00530000063186.b.b #12	ENSGT01030000234570.d.a #13	ENSGT00940000157652 #14	ENSGT00530000063688.a #15	ENSGT00390000001447 #16	ENSGT00640000091496 #17	ENSGT00940000156597.b #18	ENSGT00940000159094 #20	ENSGT00940000156307.b #21	ENSGT00390000012547.b #22	ENSGT00940000159743 #31	ENSGT00940000161191.B	ENSGT00940000154453.b #33	ENSGT00940000157249 #34	ENSGT00940000155408 #35	ENSGT00940000155235 #36	ENSGT01030000234607.A.b	ENSGT00530000063410.b	ENSGT00940000162403	ENSGT00390000015769.B	ENSGT00940000158781	ENSGT00940000160642	ENSGT00950000183014.f.a	ENSGT00940000153514.b	ENSGT00940000157974
Laterata	ANCESTRAL SPECIES	42														ENSGT00940000159094 #20	ENSGT00940000156307.b #21	ENSGT00390000012547.b #22	ENSGT00940000154107.b	ENSGT00390000004840 #23	ENSGT00940000159743 #31	ENSGT00940000161191.B	ENSGT00940000154453.b #33	ENSGT00940000157249 #34	ENSGT00940000155408 #35	ENSGT00940000155235 #36	ENSGT01030000234607.A.b	ENSGT00530000063410.b	ENSGT00940000162403	ENSGT00390000015769.B	ENSGT00940000158781	ENSGT00940000160642	ENSGT00950000183014.f.a
Argentine black and white tegu	MODERN SPECIES	12	RFTN2 (ENSSMRG00000020265)	MOB4 (ENSSMRG00000020267)	HSPE1 (ENSSMRG00000020269)	HSPD1 (ENSSMRG00000020273)	COQ10B (ENSSMRG00000020275)	SF3B1 (ENSSMRG00000020276)	ANKRD44 (ENSSMRG00000020279)	PGAP1 (ENSSMRG00000020281)	CFLAR (ENSSMRG00000020283)	ENSSMRG00000020284	TRAK2 (ENSSMRG00000020286)	MLNR (ENSSMRG00000020287)	ENSSMRG00000020288	PTH2R (ENSSMRG00000020291) #20	PIKFYVE (ENSSMRG00000020308) #21	IDH1 (ENSSMRG00000020311) #22	ENSSMRG00000020312	C2orf80 (ENSSMRG00000020315) #23	PLEKHM3 (ENSSMRG00000020318) #31	ENSSMRG00000020321	ENSSMRG00000020322 #33	METTL21A (ENSSMRG00000020324) #34	CREB1 (ENSSMRG00000020325) #35	KLF7 (ENSSMRG00000020327) #36	FASTKD2 (ENSSMRG00000020328)	MDH1B (ENSSMRG00000020330)	FAM237A (ENSSMRG00000020332)	ADAM23 (ENSSMRG00000020333)	CMKLR2 (ENSSMRG00000020632)	EEF1B2 (ENSSMRG00000020633)	NDUFS1 (ENSSMRG00000020638)
Common wall lizard	MODERN SPECIES		RAB17 (ENSPMRG00000002014)	ENSPMRG00000002010	MLPH (ENSPMRG00000001979)	COPS8 (ENSPMRG00000001949)	ENSPMRG00000001932	IQCA1 (ENSPMRG00000001911)	ASB18 (ENSPMRG00000001902)	GBX2 (ENSPMRG00000001897)	ENSPMRG00000001891	AGAP1 (ENSPMRG00000001831)	TRPM8 (ENSPMRG00000001779)	ENSPMRG00000001769	ARL4C (ENSPMRG00000001763)	PTH2R (ENSPMRG00000001701) #20	PIKFYVE (ENSPMRG00000000782) #21	IDH1 (ENSPMRG00000000420) #22	C2orf80 (ENSPMRG00000000402) #23	PLEKHM3 (ENSPMRG00000000374) #31	ENSPMRG00000000354	ENSPMRG00000000317 #33	ENSPMRG00000000296	METTL21A (ENSPMRG00000000269) #34	CREB1 (ENSPMRG00000000233) #35	KLF7 (ENSPMRG00000000188) #36	FASTKD2 (ENSPMRG00000000149)	ENSPMRG00000000143	ENSPMRG00000000134	DYTN (ENSPMRG00000000114)	FAM237A (ENSPMRG00000009266)	ADAM23 (ENSPMRG00000009258)	NDUFS1 (ENSPMRG00000009096)
Toxicofera	ANCESTRAL SPECIES		ENSGT00720000108792.B #7	ENSGT00940000155053 #8	ENSGT00940000157137 #9	ENSGT00940000154695 #10	ENSGT00940000157192 #11	ENSGT00990000210950	ENSGT00530000063186.b.b #12	ENSGT01030000234570.d.a #13	ENSGT00940000157652 #14	ENSGT00530000063688.a #15	ENSGT00390000001447 #16	ENSGT00640000091496 #17	ENSGT00940000156597.b #18	ENSGT00940000159094 #20	ENSGT00940000156307.b #21	ENSGT00390000012547.b #22	ENSGT00940000159743 #31	ENSGT00940000161191.B	ENSGT00940000154453.b #33	ENSGT00940000157249 #34	ENSGT00940000155408 #35	ENSGT00940000155235 #36	ENSGT01030000234607.A.b	ENSGT00530000063410.b	ENSGT00940000162403	ENSGT00940000158781	ENSGT00940000160642	ENSGT00950000183014.f.a	ENSGT00940000153514.b	ENSGT00940000157974	ENSGT00940000155270
Elapidae	ANCESTRAL SPECIES		ENSGT00940000155053 #8	ENSGT00940000157137.e #9	ENSGT00940000157137.f #9	ENSGT00940000154695 #10	ENSGT00940000157192 #11	ENSGT00990000210950	ENSGT00530000063186.b.b #12	ENSGT01030000234570.d.a #13	ENSGT00940000157652 #14	ENSGT00530000063688.a #15	ENSGT00390000001447 #16	ENSGT00640000091496 #17	ENSGT00940000156597.b #18	ENSGT00940000159094 #20	ENSGT00940000156307.b #21	ENSGT00390000012547.b #22	ENSGT00960000187202	ENSGT00940000159743 #31	ENSGT00940000161191.B	ENSGT00940000154453.b #33	ENSGT00940000157249 #34	ENSGT00940000155408 #35	ENSGT00940000155235 #36	ENSGT01030000234607.A.b	ENSGT00530000063410.b	ENSGT00940000158781	ENSGT00940000160642	ENSGT00950000183014.f.a	ENSGT00940000153514.b	ENSGT00940000157974	ENSGT00940000155270
Elapidae_a	ANCESTRAL SPECIES	39	ENSGT00720000108792.B #7	ENSGT00940000155053 #8	ENSGT00940000157137.e #9	ENSGT00940000154695 #10	ENSGT00940000157192 #11	ENSGT00990000210950	ENSGT00530000063186.b.b #12	ENSGT01030000234570.d.a #13	ENSGT00940000157652 #14	ENSGT00530000063688.a #15	ENSGT00390000001447 #16	ENSGT00640000091496 #17	ENSGT00940000156597.b #18	ENSGT00940000159094 #20	ENSGT00940000156307.b.g #21	ENSGT00390000012547.b #22	ENSGT00960000187202	ENSGT00940000159743 #31	ENSGT00940000161191.B	ENSGT00940000154453.b #33	ENSGT00940000157249 #34	ENSGT00940000155408 #35	ENSGT00940000155235 #36	ENSGT01030000234607.A.b	ENSGT00530000063410.b	ENSGT00940000158781	ENSGT00940000160642	ENSGT00950000183014.f.a	ENSGT00940000153514.b	ENSGT00940000157974	ENSGT00940000155270
Acanthophiinae	ANCESTRAL SPECIES	39	ENSGT00940000155053 #8	ENSGT00940000157137.e #9	ENSGT00940000154695 #10	ENSGT00940000157192 #11	ENSGT00990000210950	ENSGT00530000063186.b.b #12	ENSGT01030000234570.d.a #13	ENSGT00940000157652 #14	ENSGT00530000063688.a #15	ENSGT00990000211987	ENSGT00390000001447 #16	ENSGT00640000091496 #17	ENSGT00940000156597.b #18	ENSGT00940000159094 #20	ENSGT00940000156307.b.g #21	ENSGT00390000012547.b #22	ENSGT00960000187202	ENSGT00940000159743 #31	ENSGT00940000161191.B	ENSGT00940000154453.b #33	ENSGT00940000157249 #34	ENSGT00940000155408 #35	ENSGT00940000155235 #36	ENSGT01030000234607.A.b	ENSGT00530000063410.b	ENSGT00940000158781	ENSGT00940000160642	ENSGT00950000183014.f.a	ENSGT00940000153514.b	ENSGT00940000157974	ENSGT00940000155270
Mainland tiger snake	MODERN SPECIES	50	IKZF2 (ENSNSUG00000004175) #9	ENSNSUG00000004221	ERBB4 (ENSNSUG00000004236) #10	CPS1 (ENSNSUG00000004536) #11	ENSNSUG00000004700	LANCL1 (ENSNSUG00000004707) #12	MYL1 (ENSNSUG00000004715) #13	ACADL (ENSNSUG00000004717) #14	KANSL1L (ENSNSUG00000004719) #15	ENSNSUG00000004721	ENSNSUG00000004723 #16	UNC80 (ENSNSUG00000004726) #17	ENSNSUG00000004751 #18	PTH2R (ENSNSUG00000004799) #20	PIKFYVE (ENSNSUG00000004809) #21	IDH1 (ENSNSUG00000004817) #22	ENSNSUG00000004820	ENSNSUG00000004822	PLEKHM3 (ENSNSUG00000004824) #31	ENSNSUG00000004832	ENSNSUG00000004833	ENSNSUG00000004835 #33	METTL21A (ENSNSUG00000004836) #34	CREB1 (ENSNSUG00000004838) #35	KLF7 (ENSNSUG00000004849) #36	FASTKD2 (ENSNSUG00000004850)	MDH1B (ENSNSUG00000004966)	ADAM23 (ENSNSUG00000004968)	CMKLR2 (ENSNSUG00000004973)	EEF1B2 (ENSNSUG00000004974)	NDUFS1 (ENSNSUG00000004982)
Eastern brown snake	MODERN SPECIES	36	SPAG16 (ENSPTXG00000007151) #8	IKZF2 (ENSPTXG00000007156) #9	ERBB4 (ENSPTXG00000007162) #10	CPS1 (ENSPTXG00000007248) #11	ENSPTXG00000007250	LANCL1 (ENSPTXG00000007251) #12	MYL1 (ENSPTXG00000007252) #13	ACADL (ENSPTXG00000007253) #14	KANSL1L (ENSPTXG00000007254) #15	ENSPTXG00000007255	ENSPTXG00000007256 #16	UNC80 (ENSPTXG00000007262) #17	ENSPTXG00000007270 #18	PTH2R (ENSPTXG00000007351) #20	PIKFYVE (ENSPTXG00000007358) #21	IDH1 (ENSPTXG00000008132) #22	PLEKHM3 (ENSPTXG00000008135) #31	ENSPTXG00000008136	ENSPTXG00000008137 #33	METTL21A (ENSPTXG00000008138) #34	CREB1 (ENSPTXG00000008139) #35	KLF7 (ENSPTXG00000008140) #36	FASTKD2 (ENSPTXG00000008144)	MDH1B (ENSPTXG00000008146)	ADAM23 (ENSPTXG00000008147)	CMKLR2 (ENSPTXG00000008154)	EEF1B2 (ENSPTXG00000008156)	NDUFS1 (ENSPTXG00000008161)	INO80D (ENSPTXG00000008163)	NRP2 (ENSPTXG00000008167)	PARD3B (ENSPTXG00000008179)
Blue-lipped sea krait	MODERN SPECIES	5434																IDH1 (ENSLLTG00000015007) #22	ENSLLTG00000015003
Indian cobra	MODERN SPECIES		ENSNNAG00000004078	IKZF2 (ENSNNAG00000004094) #9	ENSNNAG00000004158	ERBB4 (ENSNNAG00000004204) #10	CPS1 (ENSNNAG00000004686) #11	ENSNNAG00000004905	LANCL1 (ENSNNAG00000004916) #12	MYL1 (ENSNNAG00000004947) #13	ACADL (ENSNNAG00000005029) #14	KANSL1L (ENSNNAG00000005103) #15	ENSNNAG00000005141 #16	UNC80 (ENSNNAG00000005183) #17	ENSNNAG00000005292 #18	PTH2R (ENSNNAG00000005410) #20	PIKFYVE (ENSNNAG00000005522) #21	IDH1 (ENSNNAG00000005790) #22	ENSNNAG00000005828	ENSNNAG00000005842	PLEKHM3 (ENSNNAG00000005905) #31	ENSNNAG00000005932	ENSNNAG00000005945 #33	METTL21A (ENSNNAG00000005999) #34	CREB1 (ENSNNAG00000006029) #35	KLF7 (ENSNNAG00000006050) #36	FASTKD2 (ENSNNAG00000006083)	MDH1B (ENSNNAG00000006119)	ADAM23 (ENSNNAG00000006219)	CMKLR2 (ENSNNAG00000006981)	EEF1B2 (ENSNNAG00000006992)	NDUFS1 (ENSNNAG00000007093)	INO80D (ENSNNAG00000007613)
Lizard	MODERN SPECIES	3	GCLM (ENSACAG00000005305)	ENSACAG00000005267	ABCA4 (ENSACAG00000005200)	ARHGAP29 (ENSACAG00000005112)	ENSACAG00000043414	ABCD3 (ENSACAG00000004947)	F3 (ENSACAG00000004924)	SLC44A3 (ENSACAG00000004877)	CNN3 (ENSACAG00000004856)	ALG14 (ENSACAG00000004845)	TLCD4 (ENSACAG00000037070)	ENSACAG00000004808	RWDD3 (ENSACAG00000004789)	PTH2R (ENSACAG00000011092) #20	PIKFYVE (ENSACAG00000009917) #21	IDH1 (ENSACAG00000009873) #22	ENSACAG00000029434	C2orf80 (ENSACAG00000028731) #23	POFUT2 (ENSACAG00000009812)	ENSACAG00000009710	ENSACAG00000009709	ENSACAG00000037091	ENSACAG00000035048	ENSACAG00000041896	ENSACAG00000038004	ENSACAG00000035141	PTBP2 (ENSACAG00000005600)	ENSACAG00000041271	DPYD (ENSACAG00000005513)	ENSACAG00000035101	ENSACAG00000039514
tuatara	MODERN SPECIES	12													PIKFYVE (ENSSPUG00000004794) #21	ENSSPUG00000004851	ENSSPUG00000004857	IDH1 (ENSSPUG00000004871) #22	ENSSPUG00000004882	ENSSPUG00000004889	ENSSPUG00000004902	ENSSPUG00000004993	PLEKHM3 (ENSSPUG00000005079) #31	ENSSPUG00000005100	ENSSPUG00000005111 #33	METTL21A (ENSSPUG00000005152) #34	CREB1 (ENSSPUG00000005164) #35
Archelosauria	ANCESTRAL SPECIES	8	ENSGT00940000157137 #9	ENSGT00940000154695 #10	ENSGT00940000157192 #11	ENSGT00960000189051	ENSGT00530000063186.b.b #12	ENSGT01030000234570.d.a #13	ENSGT00940000157652 #14	ENSGT00530000063688.a #15	ENSGT00390000001447 #16	ENSGT01030000235330	ENSGT00640000091496 #17	ENSGT00940000156597.b #18	ENSGT00940000159094 #20	ENSGT00940000156307.b #21	ENSGT00940000177631	ENSGT00390000012547.b #22	ENSGT00960000187202	ENSGT00390000004840 #23	ENSGT00940000163494.a.b.g.a	ENSGT00940000163322.a.b	ENSGT00940000156190 #25	ENSGT00940000159232 #26	ENSGT00940000163494.a.b.g.b	ENSGT00940000159743 #31	ENSGT00940000161191.B	ENSGT00940000154453.b #33	ENSGT00940000157249 #34	ENSGT00940000155408 #35	ENSGT00940000155235 #36	ENSGT00940000161508	ENSGT01030000234607.A.b
Archosauria	ANCESTRAL SPECIES	6	ENSGT00940000157137 #9	ENSGT00940000154695 #10	ENSGT00940000157192 #11	ENSGT00960000189051	ENSGT00530000063186.b.b #12	ENSGT01030000234570.d.a #13	ENSGT00940000157652 #14	ENSGT00530000063688.a #15	ENSGT00390000001447 #16	ENSGT01030000235330	ENSGT00640000091496 #17	ENSGT00940000156597.b #18	ENSGT00940000159094 #20	ENSGT00940000156307.b #21	ENSGT00940000177631	ENSGT00390000012547.b #22	ENSGT00960000187202	ENSGT00940000159743 #31	ENSGT00940000161191.B	ENSGT00940000154453.b #33	ENSGT00940000157249 #34	ENSGT00940000155408 #35	ENSGT00940000155235 #36	ENSGT00940000161508	ENSGT01030000234607.A.b	ENSGT00530000063410.b	ENSGT00940000162403	ENSGT00390000015769.B	ENSGT00940000158781	ENSGT00440000037606.b	ENSGT00940000160642
Aves	ANCESTRAL SPECIES	8	ENSGT00940000155053 #8	ENSGT00940000157137 #9	ENSGT00940000154695 #10	ENSGT00940000157192 #11	ENSGT00960000189051	ENSGT00530000063186.b.b #12	ENSGT01030000234570.d.a #13	ENSGT00940000157652 #14	ENSGT00530000063688.a #15	ENSGT00390000001447 #16	ENSGT00640000091496 #17	ENSGT00940000156597.b #18	ENSGT00940000159094 #20	ENSGT00940000156307.b #21	ENSGT00940000177631	ENSGT00390000012547.b #22	ENSGT00940000154107.b.j.b	ENSGT00390000004840 #23	ENSGT00940000159232 #26	ENSGT00940000163494.a.b.g.b	ENSGT00940000155041	ENSGT00390000017619	ENSGT00500000044939	ENSGT00940000156089	ENSGT00940000156552	ENSGT00530000063873.A	ENSGT00530000063873.B	ENSGT00390000000801	ENSGT00950000183214.a.b.a.b	ENSGT00940000155270	ENSGT00940000157974
Neognathae	ANCESTRAL SPECIES	6	ENSGT00440000038972	ENSGT00730000111148	ENSGT00940000155611.s	ENSGT00940000155611.r.b	ENSGT00940000153458.B	ENSGT00940000155392	ENSGT00940000158443	ENSGT00940000157578.o	ENSGT00940000160478	ENSGT00940000158532	ENSGT00940000160192	ENSGT00940000157043	ENSGT00940000155558	ENSGT00940000156307.b #21	ENSGT00940000177631	ENSGT00390000012547.b #22	ENSGT00940000154107.b.j.b	ENSGT00390000004840 #23	ENSGT00940000163494.a.b.g.b	ENSGT00940000155041	ENSGT00390000017619	ENSGT00500000044939	ENSGT00940000156089	ENSGT00940000156552	ENSGT00530000063873.A	ENSGT00530000063873.B	ENSGT00390000000801	ENSGT00950000183214.a.b.a.b	ENSGT00940000155270	ENSGT00940000157974	ENSGT00940000153514.b
Neognathae_b	ANCESTRAL SPECIES	7	ENSGT00730000111148	ENSGT00940000155611.s	ENSGT00940000155611.r.b	ENSGT00940000153458.B	ENSGT00940000155392	ENSGT00940000158443	ENSGT00940000157578.o	ENSGT00940000157578.p	ENSGT00940000160478	ENSGT00940000158532	ENSGT00940000160192	ENSGT00940000157043	ENSGT00940000155558	ENSGT00940000156307.b #21	ENSGT00940000177631	ENSGT00390000012547.b #22	ENSGT00940000154107.b.j.b	ENSGT00940000155041	ENSGT00390000017619	ENSGT00500000044939	ENSGT00940000156089	ENSGT00940000156552	ENSGT00530000063873.A	ENSGT00530000063873.B	ENSGT00390000000801	ENSGT00950000183214.a.b.a.b	ENSGT00940000155270	ENSGT00940000157974	ENSGT00940000153514.b	ENSGT00950000183014.f.a	ENSGT00970000193449
Neognathae_c	ANCESTRAL SPECIES	9	ENSGT01100000263523.A	ENSGT00440000038972	ENSGT00730000111148	ENSGT00940000155611.s	ENSGT00940000153458.B	ENSGT00940000155392	ENSGT00940000158443	ENSGT00940000157578.o	ENSGT00940000157578.p	ENSGT00940000160478	ENSGT00940000158532	ENSGT00940000160192	ENSGT00940000157043	ENSGT00940000155558	ENSGT00940000156307.b #21	ENSGT00390000012547.b #22	ENSGT00940000154107.b.j.b	ENSGT00390000004840 #23	ENSGT00940000163494.a.b.g.b	ENSGT00940000155041	ENSGT00390000017619	ENSGT00500000044939	ENSGT00940000156089	ENSGT00940000156552	ENSGT00530000063873.A	ENSGT00530000063873.B	ENSGT00390000000801	ENSGT00950000183214.a.b.a.b	ENSGT00940000155270	ENSGT00940000157974	ENSGT00940000153514.b
Golden eagle	MODERN SPECIES	22	ENSACCG00020003103	ENSACCG00020003079	SESTD1 (ENSACCG00020003049)	ZNF385B (ENSACCG00020003027)	CWC22 (ENSACCG00020002902)	UBE2E3 (ENSACCG00020002761)	ENSACCG00020002749	ENSACCG00020002721	ENSACCG00020002697	ENSACCG00020002671	NEUROD1 (ENSACCG00020002645)	ITPRID2 (ENSACCG00020002630)	PDE1A (ENSACCG00020002575)	DNAJC10 (ENSACCG00020002475)	PIKFYVE (ENSACCG00020002433) #21	IDH1 (ENSACCG00020002412) #22	ENSACCG00020002399	ENSACCG00020002387	ENSACCG00020002374	ENSACCG00020002359	NBEAL1 (ENSACCG00020001867)	ENSACCG00020001270	CYP20A1 (ENSACCG00020001252)	ABI2 (ENSACCG00020001210)	RAPH1 (ENSACCG00020001057)	CD28 (ENSACCG00020000853)	CTLA4 (ENSACCG00020000823)	ICOS (ENSACCG00020000759)	PARD3B (ENSACCG00020000685)	NRP2 (ENSACCG00020000561)	INO80D (ENSACCG00020000521)
Kakapo	MODERN SPECIES	22	ZNF385B (ENSSHBG00005008869)	CWC22 (ENSSHBG00005008856)	UBE2E3 (ENSSHBG00005008848)	ENSSHBG00005008841	ENSSHBG00005008833	ENSSHBG00005008821	ENSSHBG00005008817	ENSSHBG00005008779	NEUROD1 (ENSSHBG00005008762)	ITPRID2 (ENSSHBG00005007068)	PPP1R1C (ENSSHBG00005006867)	PDE1A (ENSSHBG00005005190)	ENSSHBG00005005130	ENSSHBG00005005122	ENSSHBG00005005117	IDH1 (ENSSHBG00005005110) #22	ENSSHBG00005005104	C2orf80 (ENSSHBG00005005096) #23	ENSSHBG00005005091	NBEAL1 (ENSSHBG00005003608)	ENSSHBG00005002906	CYP20A1 (ENSSHBG00005002889)	ABI2 (ENSSHBG00005002858)	RAPH1 (ENSSHBG00005002809)	CTLA4 (ENSSHBG00005002762)	ICOS (ENSSHBG00005002727)	PARD3B (ENSSHBG00005002706)	ENSSHBG00005002675	NRP2 (ENSSHBG00005002621)	INO80D (ENSSHBG00005002582)	NDUFS1 (ENSSHBG00005002546)
Passeriformes	ANCESTRAL SPECIES	6	ENSGT00730000111148	ENSGT00940000155611.s	ENSGT00940000155611.r.b	ENSGT00940000153458.B	ENSGT00940000155392	ENSGT00940000158443	ENSGT00940000157578.o	ENSGT00940000157578.p	ENSGT00940000160478	ENSGT00940000158532	ENSGT00940000160192	ENSGT00940000157043	ENSGT00940000155558	ENSGT00940000156307.b #21	ENSGT00940000177631	ENSGT00390000012547.b #22	ENSGT00940000154107.b.j.b	ENSGT00940000155041	ENSGT00390000017619	ENSGT00500000044939	ENSGT00940000156089	ENSGT00940000156552	ENSGT00530000063873.A	ENSGT00530000063873.B	ENSGT00390000000801	ENSGT00950000183214.a.b.a.b	ENSGT00940000155270	ENSGT00940000157974	ENSGT00940000153514.b	ENSGT00950000183014.f.a	ENSGT00970000193449
Great tit	MODERN SPECIES	27	CCDC141 (ENSPMJG00000018376)	SESTD1 (ENSPMJG00000018374)	ZNF385B (ENSPMJG00000018370)	CWC22 (ENSPMJG00000018367)	UBE2E3 (ENSPMJG00000018364)	ITGA4 (ENSPMJG00000018362)	ENSPMJG00000018360	ENSPMJG00000018358	ENSPMJG00000018357	NEUROD1 (ENSPMJG00000018356)	ITPRID2 (ENSPMJG00000018354)	PPP1R1C (ENSPMJG00000018351)	PDE1A (ENSPMJG00000018348)	DNAJC10 (ENSPMJG00000018346)	PIKFYVE (ENSPMJG00000018335) #21	IDH1 (ENSPMJG00000018333) #22	ENSPMJG00000018332	NBEAL1 (ENSPMJG00000018330)	ENSPMJG00000018329	CYP20A1 (ENSPMJG00000018328)	ABI2 (ENSPMJG00000018327)	RAPH1 (ENSPMJG00000018308)	CD28 (ENSPMJG00000018298)	CTLA4 (ENSPMJG00000018297)	ICOS (ENSPMJG00000018295)	PARD3B (ENSPMJG00000018290)	NRP2 (ENSPMJG00000018287)	INO80D (ENSPMJG00000018285)	NDUFS1 (ENSPMJG00000018281)	EEF1B2 (ENSPMJG00000018274)	CMKLR2 (ENSPMJG00000018273)
Passeriformes_d	ANCESTRAL SPECIES	8	ENSGT00440000038972	ENSGT00730000111148	ENSGT00940000155611.s	ENSGT00940000155611.r.b	ENSGT00940000153458.B	ENSGT00940000155392	ENSGT00940000158443	ENSGT00940000157578.o	ENSGT00940000160478	ENSGT00940000158532	ENSGT00940000160192	ENSGT00940000157043	ENSGT00940000155558	ENSGT00940000156307.b #21	ENSGT00940000177631	ENSGT00390000012547.b #22	ENSGT00940000154107.b.j.b	ENSGT00940000155041.n	ENSGT00390000017619	ENSGT00500000044939	ENSGT00940000156089	ENSGT00940000156552	ENSGT00530000063873.A	ENSGT00530000063873.B	ENSGT00390000000801	ENSGT00950000183214.a.b.a.b	ENSGT00940000155270	ENSGT00940000157974	ENSGT00940000153514.b	ENSGT00950000183014.f.a	ENSGT00970000193449
Flycatcher	MODERN SPECIES	26	ZNF385B (ENSFALG00000003483)	CWC22 (ENSFALG00000003495)	UBE2E3 (ENSFALG00000003520)	ITGA4 (ENSFALG00000003536)	ENSFALG00000024444	ENSFALG00000023961	ENSFALG00000003556	NEUROD1 (ENSFALG00000015273)	ITPRID2 (ENSFALG00000003571)	PPP1R1C (ENSFALG00000028115)	PDE1A (ENSFALG00000003586)	ENSFALG00000003612	ENSFALG00000027401	ENSFALG00000003616	ENSFALG00000003629 #21	ENSFALG00000003640 #22	ENSFALG00000023124	ENSFALG00000023047	ENSFALG00000003658	ENSFALG00000003669	CYP20A1 (ENSFALG00000003678)	ABI2 (ENSFALG00000003705)	RAPH1 (ENSFALG00000003713)	CD28 (ENSFALG00000003718)	CTLA4 (ENSFALG00000003729)	ICOS (ENSFALG00000003743)	PARD3B (ENSFALG00000003749)	ENSFALG00000024358	NRP2 (ENSFALG00000003789)	INO80D (ENSFALG00000003838)	NDUFS1 (ENSFALG00000003849)
Passeriformes_g	ANCESTRAL SPECIES	9	ENSGT00440000038972	ENSGT00730000111148	ENSGT00940000155611.s	ENSGT00940000155611.r.b	ENSGT00940000153458.B	ENSGT00940000155392	ENSGT00940000158443	ENSGT00940000157578.o	ENSGT00940000160478	ENSGT00940000158532	ENSGT00940000160192	ENSGT00940000157043	ENSGT00940000155558	ENSGT00940000156307.b #21	ENSGT00940000177631	ENSGT00390000012547.b #22	ENSGT00940000154107.b.j.b	ENSGT00940000155041.n	ENSGT00390000017619	ENSGT00500000044939	ENSGT00940000156089	ENSGT00940000156552	ENSGT00530000063873.A	ENSGT00530000063873.B	ENSGT00390000000801	ENSGT00950000183214.a.b.a.b	ENSGT00940000155270	ENSGT00940000157974	ENSGT00940000153514.b	ENSGT00950000183014.f.a	ENSGT00970000193449
Passeroidea	ANCESTRAL SPECIES	8	ENSGT00440000038972	ENSGT00730000111148	ENSGT00940000155611.s	ENSGT00940000155611.r.b	ENSGT00940000153458.B	ENSGT00940000155392	ENSGT00940000158443	ENSGT00940000157578.o	ENSGT00940000160478	ENSGT00940000158532	ENSGT00940000160192	ENSGT00940000157043	ENSGT00940000155558	ENSGT00940000156307.b #21	ENSGT00940000177631	ENSGT00390000012547.b #22	ENSGT00940000154107.b.j.b	ENSGT00940000155041.n	ENSGT00390000017619	ENSGT00500000044939	ENSGT00940000156089	ENSGT00940000156552	ENSGT00530000063873.A	ENSGT00530000063873.B	ENSGT00390000000801	ENSGT00950000183214.a.b.a.b	ENSGT00940000155270	ENSGT00940000157974	ENSGT00940000153514.b	ENSGT00950000183014.f.a	ENSGT00970000193449
Common canary	MODERN SPECIES	8	ENSSCAG00000000382	SESTD1 (ENSSCAG00000000419)	ENSSCAG00000000430	ENSSCAG00000000441	CWC22 (ENSSCAG00000000535)	UBE2E3 (ENSSCAG00000000814)	ITGA4 (ENSSCAG00000000942)	ENSSCAG00000001329	ENSSCAG00000001339	NEUROD1 (ENSSCAG00000001352)	ITPRID2 (ENSSCAG00000001386)	PPP1R1C (ENSSCAG00000001436)	PDE1A (ENSSCAG00000001471)	DNAJC10 (ENSSCAG00000001534)	PIKFYVE (ENSSCAG00000001572) #21	IDH1 (ENSSCAG00000001636) #22	ENSSCAG00000001645	NBEAL1 (ENSSCAG00000001665)	ENSSCAG00000001706	CYP20A1 (ENSSCAG00000001710)	ABI2 (ENSSCAG00000001723)	RAPH1 (ENSSCAG00000001749)	CD28 (ENSSCAG00000001788)	CTLA4 (ENSSCAG00000001805)	ICOS (ENSSCAG00000001811)	PARD3B (ENSSCAG00000001874)	NRP2 (ENSSCAG00000002055)	INO80D (ENSSCAG00000002336)	NDUFS1 (ENSSCAG00000002344)	EEF1B2 (ENSSCAG00000002352)	ENSSCAG00000002359
Zebra finch	MODERN SPECIES	29	ENSTGUG00000023081	CCDC141 (ENSTGUG00000009285)	SESTD1 (ENSTGUG00000009296)	ZNF385B (ENSTGUG00000009316)	CWC22 (ENSTGUG00000009340)	UBE2E3 (ENSTGUG00000023515)	ITGA4 (ENSTGUG00000009384)	CERKL (ENSTGUG00000009459)	NEUROD1 (ENSTGUG00000018920)	ITPRID2 (ENSTGUG00000009469)	PPP1R1C (ENSTGUG00000025209)	PDE1A (ENSTGUG00000009501)	DNAJC10 (ENSTGUG00000009565)	PIKFYVE (ENSTGUG00000009607) #21	ENSTGUG00000028065	IDH1 (ENSTGUG00000023800) #22	ENSTGUG00000018851	NBEAL1 (ENSTGUG00000029141)	ENSTGUG00000025723	CYP20A1 (ENSTGUG00000009709)	ABI2 (ENSTGUG00000009728)	RAPH1 (ENSTGUG00000009747)	CD28 (ENSTGUG00000016732)	CTLA4 (ENSTGUG00000009756)	ICOS (ENSTGUG00000009766)	ENSTGUG00000025370	PARD3B (ENSTGUG00000009770)	NRP2 (ENSTGUG00000009797)	INO80D (ENSTGUG00000009890)	NDUFS1 (ENSTGUG00000009895)	EEF1B2 (ENSTGUG00000009931)
Medium ground finch	MODERN SPECIES	1	ENSGFOG00000002781	CCDC141 (ENSGFOG00000002806)	SESTD1 (ENSGFOG00000002928)	ENSGFOG00000002977	ZNF385B (ENSGFOG00000002990)	CWC22 (ENSGFOG00000003009)	UBE2E3 (ENSGFOG00000003037)	ITGA4 (ENSGFOG00000003107)	ENSGFOG00000004303	NEUROD1 (ENSGFOG00000004323)	ITPRID2 (ENSGFOG00000004331)	PPP1R1C (ENSGFOG00000004599)	PDE1A (ENSGFOG00000004634)	DNAJC10 (ENSGFOG00000004722)	PIKFYVE (ENSGFOG00000004768) #21	IDH1 (ENSGFOG00000004936) #22	ENSGFOG00000004948	NBEAL1 (ENSGFOG00000005037)	ENSGFOG00000006136	CYP20A1 (ENSGFOG00000006144)	ABI2 (ENSGFOG00000006158)	RAPH1 (ENSGFOG00000006191)	CD28 (ENSGFOG00000006204)	CTLA4 (ENSGFOG00000006210)	ICOS (ENSGFOG00000006216)	ENSGFOG00000006219	PARD3B (ENSGFOG00000006247)	NRP2 (ENSGFOG00000006567)	INO80D (ENSGFOG00000006596)	NDUFS1 (ENSGFOG00000006610)	EEF1B2 (ENSGFOG00000006636)
Galloanserae	ANCESTRAL SPECIES	7	ENSGT01100000263532.A.a.a.a.b.d	ENSGT01100000263523.A	ENSGT00440000038972	ENSGT00730000111148	ENSGT00940000155611.s	ENSGT00940000153458.B	ENSGT00940000155392	ENSGT00940000158443	ENSGT00940000157578.o	ENSGT00940000160478	ENSGT00940000158532	ENSGT00940000160192	ENSGT00940000157043	ENSGT00940000155558	ENSGT00940000156307.b #21	ENSGT00390000012547.b #22	ENSGT00940000154107.b.j.b	ENSGT00390000004840 #23	ENSGT00940000163494.a.b.g.b	ENSGT00940000155041	ENSGT00390000017619	ENSGT00500000044939	ENSGT00940000156089	ENSGT00940000156552	ENSGT00530000063873.A	ENSGT00530000063873.B	ENSGT00390000000801	ENSGT00950000183214.a.b.a.b	ENSGT00940000155270	ENSGT00940000157974	ENSGT00940000153514.b
Anatidae	ANCESTRAL SPECIES	10	ENSGT01100000263532.A.a.a.a.b.d	ENSGT01100000263523.A	ENSGT00440000038972	ENSGT00730000111148	ENSGT00940000155611.s	ENSGT00940000153458.B	ENSGT00940000155392	ENSGT00940000158443	ENSGT00940000157578.o	ENSGT00940000160478	ENSGT00940000158532	ENSGT00940000160192	ENSGT00940000157043	ENSGT00940000155558	ENSGT00940000156307.b #21	ENSGT00390000012547.b #22	ENSGT00940000154107.b.j.b	ENSGT00390000004840 #23	ENSGT00940000163494.a.b.g.b	ENSGT00940000155041	ENSGT00390000017619	ENSGT00500000044939	ENSGT00940000156089	ENSGT00940000156552	ENSGT00530000063873.A	ENSGT00530000063873.B	ENSGT00390000000801	ENSGT00950000183214.a.b.a.b	ENSGT00940000155270	ENSGT00940000157974	ENSGT00940000153514.b
Pink-footed goose	MODERN SPECIES	20	ENSABRG00000004343	ENSABRG00000004369	CCDC141 (ENSABRG00000004385)	SESTD1 (ENSABRG00000004572)	ZNF385B (ENSABRG00000004629)	CWC22 (ENSABRG00000004650)	UBE2E3 (ENSABRG00000004707)	ITGA4 (ENSABRG00000004733)	CERKL (ENSABRG00000004753)	NEUROD1 (ENSABRG00000004771)	ITPRID2 (ENSABRG00000004783)	ENSABRG00000004846	PDE1A (ENSABRG00000004850)	DNAJC10 (ENSABRG00000004922)	PIKFYVE (ENSABRG00000005739) #21	IDH1 (ENSABRG00000006852) #22	ENSABRG00000006873	C2orf80 (ENSABRG00000006880) #23	ENSABRG00000006883	NBEAL1 (ENSABRG00000007015)	ENSABRG00000008369	ENSABRG00000008403
Duck	MODERN SPECIES	25	BIN1 (ENSAPLG00000012452)	CYP27C1 (ENSAPLG00000012186)	ERCC3 (ENSAPLG00000012068)	THSD7B (ENSAPLG00000002773)	UBE2E3 (ENSAPLG00000011305)	ITGA4 (ENSAPLG00000011547)	ENSAPLG00000026156	ENSAPLG00000012428	NEUROD1 (ENSAPLG00000020272)	ITPRID2 (ENSAPLG00000012488)	PPP1R1C (ENSAPLG00000028661)	PDE1A (ENSAPLG00000012827)	ENSAPLG00000013405	ENSAPLG00000028706	PIKFYVE (ENSAPLG00000014164) #21	IDH1 (ENSAPLG00000014810) #22	ENSAPLG00000015011	ENSAPLG00000018471	ENSAPLG00000024504	ENSAPLG00000017302	ENSAPLG00000027901	ENSAPLG00000025723	ENSAPLG00000025132	CYP20A1 (ENSAPLG00000015942)	ABI2 (ENSAPLG00000016216)	RAPH1 (ENSAPLG00000000860)	CD28 (ENSAPLG00000001723)	CTLA4 (ENSAPLG00000001966)	ICOS (ENSAPLG00000002410)	PARD3B (ENSAPLG00000002583)	NRP2 (ENSAPLG00000002735)
Phasianidae	ANCESTRAL SPECIES	8	ENSGT01100000263532.A.a.a.a.b.d	ENSGT01100000263523.A	ENSGT00440000038972	ENSGT00730000111148	ENSGT00940000155611.s	ENSGT00940000153458.B	ENSGT00940000155392	ENSGT00940000158443	ENSGT00940000157578.o	ENSGT00940000160478	ENSGT00940000158532	ENSGT00940000160192	ENSGT00940000157043	ENSGT00940000155558	ENSGT00940000156307.b #21	ENSGT00390000012547.b #22	ENSGT00940000154107.b.j.b	ENSGT00940000155041	ENSGT00390000017619	ENSGT00500000044939	ENSGT00940000156089	ENSGT00940000156552	ENSGT00530000063873.A	ENSGT00530000063873.B	ENSGT00390000000801	ENSGT00950000183214.a.b.a.b	ENSGT00940000155270	ENSGT00940000157974	ENSGT00940000153514.b	ENSGT00950000183014.f.a	ENSGT00940000160642
Phasianidae_b	ANCESTRAL SPECIES	8	ENSGT01100000263532.A.a.a.a.b.d	ENSGT01100000263523.A	ENSGT00440000038972	ENSGT00730000111148	ENSGT00940000155611.s	ENSGT00940000153458.B	ENSGT00940000155392	ENSGT00940000158443	ENSGT00940000157578.o	ENSGT00940000160478	ENSGT00940000158532	ENSGT00940000160192	ENSGT00940000157043	ENSGT00940000155558	ENSGT00940000156307.b #21	ENSGT00390000012547.b #22	ENSGT00940000154107.b.j.b	ENSGT00940000155041	ENSGT00390000017619	ENSGT00500000044939	ENSGT00940000156089	ENSGT00940000156552	ENSGT00530000063873.A	ENSGT00530000063873.B	ENSGT00390000000801	ENSGT00950000183214.a.b.a.b	ENSGT00940000155270	ENSGT00940000157974	ENSGT00940000153514.b	ENSGT00950000183014.f.a	ENSGT00940000160642
Chicken	MODERN SPECIES	36	PLEKHA3 (ENSGALG00010023496)	TTN (ENSGALG00010022969)	CCDC141 (ENSGALG00010026242)	SESTD1 (ENSGALG00010026183)	ZNF385B (ENSGALG00010026154)	CWC22 (ENSGALG00010026114)	UBE2E3 (ENSGALG00010026078)	ITGA4 (ENSGALG00010026062)	CERKL (ENSGALG00010026044)	NEUROD1 (ENSGALG00010026026)	ITPRID2 (ENSGALG00010022406)	PPP1R1C (ENSGALG00010022396)	PDE1A (ENSGALG00010022334)	DNAJC10 (ENSGALG00010022293)	PIKFYVE (ENSGALG00010022245) #21	IDH1 (ENSGALG00010022213) #22	ENSGALG00010022181	NBEAL1 (ENSGALG00010022149)	ENSGALG00010022124	CYP20A1 (ENSGALG00010022116)	ABI2 (ENSGALG00010022079)	RAPH1 (ENSGALG00010022033)	CD28 (ENSGALG00010021995)	CTLA4 (ENSGALG00010021983)	ICOS (ENSGALG00010021971)	PARD3B (ENSGALG00010021734)	NRP2 (ENSGALG00010026008)	INO80D (ENSGALG00010025994)	NDUFS1 (ENSGALG00010025984)	EEF1B2 (ENSGALG00010025974)	GPR1 (ENSGALG00010025960)
Turkey	MODERN SPECIES	27	ENSMGAG00000022099	ENSMGAG00000019104	ENSMGAG00000019342	ENSMGAG00000016742	CCDC141 (ENSMGAG00000009304)	SESTD1 (ENSMGAG00000009282)	ZNF385B (ENSMGAG00000009267)	CWC22 (ENSMGAG00000009220)	UBE2E3 (ENSMGAG00000009214)	ENSMGAG00000009146	CERKL (ENSMGAG00000009130)	ITPRID2 (ENSMGAG00000009083)	PPP1R1C (ENSMGAG00000009069)	PDE1A (ENSMGAG00000009032)	ENSMGAG00000008939 #21	ENSMGAG00000008920 #22	ENSMGAG00000008985	ENSMGAG00000019768	NBEAL1 (ENSMGAG00000008870)	ENSMGAG00000019797	CYP20A1 (ENSMGAG00000008831)	ABI2 (ENSMGAG00000008821)	RAPH1 (ENSMGAG00000008794)	CD28 (ENSMGAG00000008783)	CTLA4 (ENSMGAG00000008759)	ICOS (ENSMGAG00000008751)	ENSMGAG00000021009	PARD3B (ENSMGAG00000008728)	INO80D (ENSMGAG00000008621)	NDUFS1 (ENSMGAG00000008573)	EEF1B2 (ENSMGAG00000008548)
Japanese quail	MODERN SPECIES	25	ENSCJPG00005017331	ENSCJPG00005017330	CCDC141 (ENSCJPG00005017329)	SESTD1 (ENSCJPG00005017328)	ZNF385B (ENSCJPG00005017319)	CWC22 (ENSCJPG00005017318)	UBE2E3 (ENSCJPG00005017308)	ITGA4 (ENSCJPG00005016736)	CERKL (ENSCJPG00005016733)	NEUROD1 (ENSCJPG00005016724)	ITPRID2 (ENSCJPG00005016723)	PPP1R1C (ENSCJPG00005016722)	PDE1A (ENSCJPG00005016432)	DNAJC10 (ENSCJPG00005016431)	PIKFYVE (ENSCJPG00005016284) #21	IDH1 (ENSCJPG00005016283) #22	ENSCJPG00005016282	NBEAL1 (ENSCJPG00005015909)	ENSCJPG00005015898	CYP20A1 (ENSCJPG00005015897)	ABI2 (ENSCJPG00005015864)	EEF1B2 (ENSCJPG00005015859)	NDUFS1 (ENSCJPG00005015858)	INO80D (ENSCJPG00005015857)	NRP2 (ENSCJPG00005015851)	ENSCJPG00005015848	ENSCJPG00005015847	ENSCJPG00005015846	PARD3B (ENSCJPG00005015409)	ICOS (ENSCJPG00005015381)	CTLA4 (ENSCJPG00005015379)
African ostrich	MODERN SPECIES	1071	BARD1 (ENSSCUG00000013356)	VWC2L (ENSSCUG00000013355) #7	SPAG16 (ENSSCUG00000013354) #8	IKZF2 (ENSSCUG00000013350) #9	ERBB4 (ENSSCUG00000013317) #10	CPS1 (ENSSCUG00000013255) #11	LANCL1 (ENSSCUG00000013218) #12	MYL1 (ENSSCUG00000013213) #13	ACADL (ENSSCUG00000013211) #14	KANSL1L (ENSSCUG00000013205) #15	ENSSCUG00000013202 #16	UNC80 (ENSSCUG00000013197) #17	MAP2 (ENSSCUG00000013191) #18	PTH2R (ENSSCUG00000013187) #20	PIKFYVE (ENSSCUG00000013177) #21	IDH1 (ENSSCUG00000013175) #22	ENSSCUG00000013173	C2orf80 (ENSSCUG00000013171) #23	ENSSCUG00000013166 #26	ENSSCUG00000013162	NBEAL1 (ENSSCUG00000013063)	ABI2 (ENSSCUG00000013010)	RAPH1 (ENSSCUG00000013003)	CD28 (ENSSCUG00000012996)	CTLA4 (ENSSCUG00000012995)	ENSSCUG00000012993	PARD3B (ENSSCUG00000012989)
Australian saltwater crocodile	MODERN SPECIES	66	ENSCPRG00005003324	ENSCPRG00005003312 #8	ENSCPRG00005003294	IKZF2 (ENSCPRG00005003290) #9	ERBB4 (ENSCPRG00005003197) #10	CPS1 (ENSCPRG00005002612) #11	LANCL1 (ENSCPRG00005002510) #12	MYL1 (ENSCPRG00005002506) #13	ACADL (ENSCPRG00005002494) #14	KANSL1L (ENSCPRG00005002482) #15	ENSCPRG00005002478 #16	ENSCPRG00005002476	UNC80 (ENSCPRG00005002350) #17	ENSCPRG00005002217 #18	PIKFYVE (ENSCPRG00005002112) #21	IDH1 (ENSCPRG00005002078) #22	ENSCPRG00005002066	C2orf80 (ENSCPRG00005002051) #23	ENSCPRG00005002039	CRYGA (ENSCPRG00005002034) #25	ENSCPRG00005002022	ENSCPRG00005002018	PLEKHM3 (ENSCPRG00005002005) #31	ENSCPRG00005002000	ENSCPRG00005001990 #33	METTL21A (ENSCPRG00005001979) #34	CREB1 (ENSCPRG00005001961) #35	KLF7 (ENSCPRG00005001954) #36	CPO (ENSCPRG00005001934)	FASTKD2 (ENSCPRG00005001926)	MDH1B (ENSCPRG00005001923)
Cryptodira	ANCESTRAL SPECIES	5	ENSGT00720000108792.B #7	ENSGT00940000155053 #8	ENSGT00940000157137 #9	ENSGT00940000154695 #10	ENSGT00940000157192 #11	ENSGT00960000189051	ENSGT00530000063186.b.b #12	ENSGT01030000234570.d.a #13	ENSGT00940000157652 #14	ENSGT00530000063688.a #15	ENSGT00390000001447 #16	ENSGT00640000091496 #17	ENSGT00940000156597.b #18	ENSGT00940000159094 #20	ENSGT00940000156307.b #21	ENSGT00390000012547.b #22	ENSGT00390000004840 #23	ENSGT00940000156190 #25	ENSGT00940000159232 #26	ENSGT00940000163494.a.b.g.b	ENSGT00940000159743 #31	ENSGT00940000161191.B	ENSGT00940000154453.b #33	ENSGT00940000157249 #34	ENSGT00940000155408 #35	ENSGT00940000155235 #36	ENSGT00940000161508	ENSGT01030000234607.A.b	ENSGT00530000063410.b	ENSGT00940000162403	ENSGT00390000015769.B
Testudinoidea	ANCESTRAL SPECIES	11	ENSGT00720000108792.B #7	ENSGT00940000155053 #8	ENSGT00940000157137 #9	ENSGT00940000154695 #10	ENSGT00940000157192 #11	ENSGT00960000189051	ENSGT00530000063186.b.b #12	ENSGT01030000234570.d.a #13	ENSGT00940000157652 #14	ENSGT00530000063688.a #15	ENSGT00390000001447 #16	ENSGT00640000091496 #17	ENSGT00940000156597.b #18	ENSGT00940000159094 #20	ENSGT00940000156307.b #21	ENSGT00390000012547.b #22	ENSGT00940000154107.b	ENSGT00390000004840 #23	ENSGT00940000163494.a.b.g.a	ENSGT00940000163322.a.b	ENSGT00940000156190 #25	ENSGT00940000159232 #26	ENSGT00940000163494.a.b.g.b	ENSGT00940000159743 #31	ENSGT00940000161191.B	ENSGT00940000154453.b #33	ENSGT00940000157249 #34	ENSGT00940000155408 #35	ENSGT00940000155235 #36	ENSGT00940000161508	ENSGT01030000234607.A.b
Emydidae	ANCESTRAL SPECIES	4	ENSGT00940000156532	ENSGT00720000108792.B #7	ENSGT00940000155053 #8	ENSGT00940000157137 #9	ENSGT00940000154695 #10	ENSGT00940000157192 #11	ENSGT00530000063186.b.b #12	ENSGT01030000234570.d.a #13	ENSGT00940000157652 #14	ENSGT00530000063688.a #15	ENSGT00390000001447 #16	ENSGT00640000091496 #17	ENSGT00940000156597.b #18	ENSGT00940000159094 #20	ENSGT00940000156307.b #21	ENSGT00390000012547.b #22	ENSGT00940000154107.b	ENSGT00390000004840 #23	ENSGT00940000156190.c.a #25	ENSGT00940000159232 #26	ENSGT00940000163494.a.b.g.b	ENSGT00940000159743 #31	ENSGT00940000161191.B	ENSGT00940000154453.b #33	ENSGT00940000157249 #34	ENSGT00940000155408 #35	ENSGT00940000155235 #36	ENSGT00940000161508	ENSGT01030000234607.A.b	ENSGT00530000063410.b	ENSGT00940000162403
Three-toed box turtle	MODERN SPECIES	25	VWC2L (ENSTMTG00000002929) #7	ENSTMTG00000002921 #8	ENSTMTG00000002912 #8	IKZF2 (ENSTMTG00000002878) #9	ERBB4 (ENSTMTG00000002803) #10	CPS1 (ENSTMTG00000002766) #11	LANCL1 (ENSTMTG00000002758) #12	MYL1 (ENSTMTG00000002746) #13	ACADL (ENSTMTG00000002733) #14	KANSL1L (ENSTMTG00000002723) #15	ENSTMTG00000002718 #16	UNC80 (ENSTMTG00000002568) #17	ENSTMTG00000002484 #18	PTH2R (ENSTMTG00000002463) #20	PIKFYVE (ENSTMTG00000001522) #21	IDH1 (ENSTMTG00000001317) #22	C2orf80 (ENSTMTG00000001308) #23	ENSTMTG00000001300 #25	ENSTMTG00000001290 #25	ENSTMTG00000001279 #25	ENSTMTG00000001256 #19	ENSTMTG00000001219	PLEKHM3 (ENSTMTG00000001191) #31	ENSTMTG00000001184	ENSTMTG00000001162 #33	METTL21A (ENSTMTG00000001153) #34	CREB1 (ENSTMTG00000001136) #35	KLF7 (ENSTMTG00000001122) #36	CPO (ENSTMTG00000001098)	FASTKD2 (ENSTMTG00000001072)	MDH1B (ENSTMTG00000001002)
painted turtle	MODERN SPECIES	805														PTH2R (ENSCPBG00000021250) #20	PIKFYVE (ENSCPBG00000021070) #21	IDH1 (ENSCPBG00000020969) #22	ENSCPBG00000020937	C2orf80 (ENSCPBG00000020892) #23	ENSCPBG00000020867	ENSCPBG00000020845	ENSCPBG00000020830	ENSCPBG00000020799 #26	ENSCPBG00000020642	CRYGA (ENSCPBG00000020534) #25	ENSCPBG00000020500 #26	ENSCPBG00000020472	PLEKHM3 (ENSCPBG00000020373) #31	ENSCPBG00000020270	ENSCPBG00000020210 #33	METTL21A (ENSCPBG00000020196) #34	CREB1 (ENSCPBG00000020191) #35
Testudinidae	ANCESTRAL SPECIES	8	ENSGT00720000108792.B #7	ENSGT00940000155053 #8	ENSGT00940000157137 #9	ENSGT00940000154695 #10	ENSGT00940000157192 #11	ENSGT00960000189051	ENSGT00530000063186.b.b #12	ENSGT01030000234570.d.a #13	ENSGT00940000157652 #14	ENSGT00530000063688.a #15	ENSGT00390000001447 #16	ENSGT00640000091496 #17	ENSGT00940000156597.b #18	ENSGT00940000159094 #20	ENSGT00940000156307.b #21	ENSGT00390000012547.b #22	ENSGT00940000154107.b	ENSGT00390000004840 #23	ENSGT00940000163322.a.b.f	ENSGT00940000163494.a.b.g.a	ENSGT00940000163322.a.b.e	ENSGT00940000156190 #25	ENSGT00960000190368	ENSGT00940000163494.a.b.g.b	ENSGT00940000159743 #31	ENSGT00940000161191.B	ENSGT00940000154453.b #33	ENSGT00940000157249 #34	ENSGT00940000155408 #35	ENSGT00940000155235 #36	ENSGT00940000161508
Goode s thornscrub tortoise	MODERN SPECIES	2	VWC2L (ENSGEVG00005014438) #7	ENSGEVG00005014460 #8	ENSGEVG00005014540 #8	IKZF2 (ENSGEVG00005014648) #9	ERBB4 (ENSGEVG00005015015) #10	CPS1 (ENSGEVG00005015920) #11	ENSGEVG00005016107	LANCL1 (ENSGEVG00005016202) #12	MYL1 (ENSGEVG00005016236) #13	ACADL (ENSGEVG00005016296) #14	KANSL1L (ENSGEVG00005016332) #15	ENSGEVG00005016355 #16	UNC80 (ENSGEVG00005004294) #17	ENSGEVG00005004848 #18	PTH2R (ENSGEVG00005005111) #20	IDH1 (ENSGEVG00005005468) #22	C2orf80 (ENSGEVG00005005500) #23	ENSGEVG00005005557	ENSGEVG00005005635	ENSGEVG00005005668	CRYGA (ENSGEVG00005005709) #25	ENSGEVG00005005746	ENSGEVG00005005756	PLEKHM3 (ENSGEVG00005005792) #31	ENSGEVG00005005818	ENSGEVG00005005842 #33	METTL21A (ENSGEVG00005005862) #34	CREB1 (ENSGEVG00005005883) #35	KLF7 (ENSGEVG00005005958) #36	CPO (ENSGEVG00005005978)	FASTKD2 (ENSGEVG00005006068)
Abingdon island giant tortoise	MODERN SPECIES	2493						CPS1 (ENSCABG00000020978) #11	LANCL1 (ENSCABG00000021026) #12	MYL1 (ENSCABG00000021030) #13	ACADL (ENSCABG00000021048) #14	KANSL1L (ENSCABG00000021161) #15	ENSCABG00000021164 #16	UNC80 (ENSCABG00000021168) #17	ENSCABG00000021179 #18	PTH2R (ENSCABG00000021190) #20	PIKFYVE (ENSCABG00000021210) #21	IDH1 (ENSCABG00000021521) #22	ENSCABG00000021522	C2orf80 (ENSCABG00000021523) #23	ENSCABG00000021525 #25	ENSCABG00000021527 #25	ENSCABG00000021528	CRYGD (ENSCABG00000021530)	ENSCABG00000021532	ENSCABG00000021534 #25	ENSCABG00000021536	ENSCABG00000021540	PLEKHM3 (ENSCABG00000021546) #31	ENSCABG00000021547	ENSCABG00000021553 #33	METTL21A (ENSCABG00000021568) #34	CREB1 (ENSCABG00000021569) #35
Chinese turtle	MODERN SPECIES	386													CTLA4 (ENSPSIG00000004610)	ENSPSIG00000004603	PIKFYVE (ENSPSIG00000004497) #21	IDH1 (ENSPSIG00000004318) #22
Anura	ANCESTRAL SPECIES	39	ENSGT00950000183178.b.a	ENSGT00940000153744.A	ENSGT00680000100065	ENSGT00390000007295	ENSGT00390000012446	ENSGT00390000015143.e	ENSGT00390000015143.f	ENSGT00390000006303	ENSGT00940000155675	ENSGT00940000161229	ENSGT00940000156186	ENSGT00390000018807	ENSGT00940000156404.v.a	ENSGT00940000159094 #20	ENSGT00940000156307.b #21	ENSGT00390000012547.b #22	ENSGT00940000162667.f	ENSGT00940000163322.a.b.c.b.b.b	ENSGT00940000161508.c.b	ENSGT00940000161508.c.a	ENSGT00940000163494.a.b.e.a.a.a.b	ENSGT00940000163322.a.b.c.b.b.a	ENSGT00940000163322.a.b.d	ENSGT00940000163494.a.b.e.a.a.a.a.a	ENSGT00940000163494.a.b.e.a.a.a.a.b	ENSGT00940000163322.a.b.c.b.a	ENSGT00940000163494.a.b.e.a.a.b	ENSGT00940000163494.a.b.f	ENSGT00940000159743 #31	ENSGT00940000161191.B	ENSGT00940000154453.b #33
Frog	MODERN SPECIES	9	slc40a1 (ENSXETG00000009874)	ENSXETG00000041263	wdr75 (ENSXETG00000009873)	trhd (ENSXETG00000045658)	col5a2 (ENSXETG00000010784)	col3a1 (ENSXETG00000010783)	gulp1 (ENSXETG00000042528)	ENSXETG00000046687	ENSXETG00000042824	cfap410 (ENSXETG00000015297)	trpm2 (ENSXETG00000035657)	pth2r (ENSXETG00000008019) #20	ENSXETG00000049336	ENSXETG00000049218	pikfyve (ENSXETG00000025548) #21	idh1 (ENSXETG00000008032) #22	ENSXETG00000038131	cryga.1 (ENSXETG00000049476)	cpo.2 (ENSXETG00000030825)	cpo.1 (ENSXETG00000025544)	cryga.3 (ENSXETG00000042441)	cryga.4 (ENSXETG00000025543)	cryga.5 (ENSXETG00000042016)	cryga.6 (ENSXETG00000038861)	ENSXETG00000040211	ENSXETG00000044470	ENSXETG00000043212	plekhm3 (ENSXETG00000016380) #31	ccnyl1 (ENSXETG00000016385) #33	fzd5 (ENSXETG00000046962)	mettl21a (ENSXETG00000046854) #34
Leishan spiny toad	MODERN SPECIES	10	ENSLLEG00000019642	ENSLLEG00000019577	PTH2R (ENSLLEG00000019196) #20	ENSLLEG00000019144	ENSLLEG00000019123	ENSLLEG00000019085	ENSLLEG00000019061	ENSLLEG00000019044	PIKFYVE (ENSLLEG00000017459) #21	ENSLLEG00000017337	ENSLLEG00000017264	ENSLLEG00000017233	ENSLLEG00000017162	ENSLLEG00000017150	ENSLLEG00000017133	IDH1 (ENSLLEG00000017047) #22	ENSLLEG00000016954	ENSLLEG00000016899	ENSLLEG00000016735	ENSLLEG00000016710	ENSLLEG00000016595	ENSLLEG00000016093	ENSLLEG00000029520	ENSLLEG00000029500	ENSLLEG00000029474	ENSLLEG00000029459	ENSLLEG00000029447	ENSLLEG00000029432	ENSLLEG00000029411	ENSLLEG00000029402	CREB1 (ENSLLEG00000029361) #35
Coelacanth	MODERN SPECIES	767										rpe (ENSLACG00000002800) #16	ENSLACG00000005077 #17	ENSLACG00000005980 #17	MAP2 (ENSLACG00000007670) #18	PTH2R (ENSLACG00000012537) #20	PIKFYVE (ENSLACG00000013832) #21	IDH1 (ENSLACG00000014588) #22	ENSLACG00000015093
Actinopterygii	ANCESTRAL SPECIES	142															ENSGT00940000156307.b #21	ENSGT00390000012547.b #22	ENSGT00940000159743 #31	ENSGT00940000162639 #32	ENSGT00940000161191.B	ENSGT00940000154453.a.a ##33	ENSGT00940000157249 #34	ENSGT00940000155408 #35	ENSGT00940000155235 #36	ENSGT00940000163794	ENSGT00940000154349	ENSGT00940000159224	ENSGT00940000165690	ENSGT00390000007989	ENSGT00940000155752	ENSGT00940000157295	ENSGT00940000156532
Reedfish	MODERN SPECIES	16	tsn (ENSECRG00000016831)	ENSECRG00000016817	ENSECRG00000016787	nifk (ENSECRG00000016758)	CLASP1 (ENSECRG00000016717)	tfcp2l1 (ENSECRG00000016675)	gli2b (ENSECRG00000016646)	inhbb (ENSECRG00000016627)	ralba (ENSECRG00000016609)	epb41l5 (ENSECRG00000016552)	ptpn4a (ENSECRG00000016477)	tmem177 (ENSECRG00000016443)	MRAS (ENSECRG00000016411)	pth2ra (ENSECRG00000015866) #20	pikfyve (ENSECRG00000015628) #21	idh1 (ENSECRG00000015540) #22	PLEKHM3 (ENSECRG00000015515) #31	ENSECRG00000015484	ENSECRG00000015123 ##33	mettl21a (ENSECRG00000015070) #34	creb1b (ENSECRG00000015035) #35	klf7b (ENSECRG00000015008) #36	zgc:162396 (ENSECRG00000014641)	zgc:162396 (ENSECRG00000014558)	ube2f (ENSECRG00000014448)	ramp1 (ENSECRG00000014413)	pofut2 (ENSECRG00000014386)	MYO1B (ENSECRG00000014259)	ENSECRG00000014140	BARD1 (ENSECRG00000014092)	vwc2l (ENSECRG00000009136) #7
Neopterygii	ANCESTRAL SPECIES	63	ENSGT00390000005727.b	ENSGT00390000006350	ENSGT01050000244956.b	ENSGT00530000063609.a	ENSGT00530000063480.a	ENSGT00940000158407	ENSGT00390000008096.B	ENSGT00940000155792	ENSGT00470000042284	ENSGT00940000160342	ENSGT00940000162599	ENSGT00940000166096	ENSGT00510000047481	ENSGT00390000003033	ENSGT00940000165242	ENSGT00390000012547.b #22	ENSGT00940000159743 #31	ENSGT00940000162639 #32	ENSGT00940000154453.a.b.a ##33	ENSGT00940000157249 #34	ENSGT00940000155408 #35	ENSGT00940000155235 #36	ENSGT00940000163794	ENSGT00940000165586	ENSGT00940000154349	ENSGT00940000159224	ENSGT00940000165690	ENSGT00390000007989	ENSGT00940000155752	ENSGT00940000157295	ENSGT00940000156532
Spotted gar	MODERN SPECIES	650	hspe1 (ENSLOCG00000003954)	mob4 (ENSLOCG00000003970)	rftn2 (ENSLOCG00000003988)	BOLL (ENSLOCG00000004003)	PLCL1 (ENSLOCG00000004019)	satb2 (ENSLOCG00000004032)	dnajb11 (ENSLOCG00000004052)	tbccd1 (ENSLOCG00000004084)	crygs1 (ENSLOCG00000004099)	lcmt2 (ENSLOCG00000004108)	rab5b (ENSLOCG00000004128)	dbr1 (ENSLOCG00000004160)	armc8 (ENSLOCG00000004183)	ENSLOCG00000004199	ENSLOCG00000004209	idh1 (ENSLOCG00000004227) #22	PLEKHM3 (ENSLOCG00000004251) #31	ccnyl1 (ENSLOCG00000004267) ##33	mettl21a (ENSLOCG00000004303) #34	creb1b (ENSLOCG00000004320) #35	zgc:162396 (ENSLOCG00000004335)	si:ch211-93g23.2 (ENSLOCG00000004350)	ube2f (ENSLOCG00000004366)	ramp1 (ENSLOCG00000004383)	ENSLOCG00000004395	pofut2 (ENSLOCG00000004410)	MYO1B (ENSLOCG00000004425)	ABCA12 (ENSLOCG00000004451)	BARD1 (ENSLOCG00000004470)	vwc2l (ENSLOCG00000004485) #7	IKZF2 (ENSLOCG00000004501) #9
Osteoglossocephalai	ANCESTRAL SPECIES	157	ENSGT00390000005727.b	ENSGT00390000006350	ENSGT01050000244956.b	ENSGT00530000063609.a	ENSGT00530000063480.a	ENSGT00940000158407	ENSGT00390000008096.B	ENSGT00940000155792	ENSGT00470000042284	ENSGT00940000160342	ENSGT00940000162599	ENSGT00940000166096	ENSGT00510000047481	ENSGT00390000003033	ENSGT00940000165242	ENSGT00390000012547.b #22	ENSGT00940000159743 #31	ENSGT00940000162639 #32	ENSGT00940000155408 #35	ENSGT00940000155235 #36	ENSGT00940000161191.B	ENSGT00940000154453.a.b.a.a.a ##33	ENSGT00940000154453.a.b.a.a.b ##33	ENSGT00940000157249 #34	ENSGT00940000163794	ENSGT00940000165586	ENSGT00940000154349	ENSGT00940000159224
Osteoglossiformes	ANCESTRAL SPECIES	105	ENSGT00390000005727.b	ENSGT00390000006350	ENSGT01050000244956.b	ENSGT00530000063609.a.j	ENSGT00530000063480.a	ENSGT00940000158407.a	ENSGT00390000008096.B.c	ENSGT00940000155792.a	ENSGT00470000042284	ENSGT00940000160342	ENSGT00940000162599	ENSGT00940000166096.a	ENSGT00510000047481	ENSGT00390000003033	ENSGT00940000165242	ENSGT00390000012547.b #22	ENSGT00940000159743 #31	ENSGT00940000161191.B	ENSGT00940000154453.a.b.a.a.a ##33	ENSGT00940000155408.n #35	ENSGT00940000155235.j #36	ENSGT00940000178681	ENSGT00940000157249 #34	ENSGT00940000155408.m #35	ENSGT00940000155235.i.a #36	ENSGT00940000163794
P. kingsleyae	MODERN SPECIES	224																idh1 (ENSPKIG00000014476) #22	PLEKHM3 (ENSPKIG00000014532) #31	ENSPKIG00000014565	ccnyl1 (ENSPKIG00000014613) ##33	mettl21a (ENSPKIG00000014696) #34	CREB1 (ENSPKIG00000014731) #35	klf7b (ENSPKIG00000014765) #36	zgc:162396 (ENSPKIG00000014798)	ramp1 (ENSPKIG00000014837)	MYO1B (ENSPKIG00000014870)	ABCA12 (ENSPKIG00000014965)	IKZF2 (ENSPKIG00000015042) #9	ERBB4 (ENSPKIG00000015110) #10	lancl1 (ENSPKIG00000015217) #12	mylz3 (ENSPKIG00000015263) #13	ENSPKIG00000015285
Asian bonytongue	MODERN SPECIES		ENSSFOG00015025383	ENSSFOG00015029157	ENSSFOG00015024264	mob4 (ENSSFOG00015023335)	rftn2 (ENSSFOG00015023346)	BOLL (ENSSFOG00015023350)	PLCL1 (ENSSFOG00015025704)	satb2 (ENSSFOG00015023364)	dnajb11 (ENSSFOG00015023379)	tbccd1 (ENSSFOG00015023390)	crygs1 (ENSSFOG00015023395)	lcmt2 (ENSSFOG00015023406)	rab5b (ENSSFOG00015032251)	armc8 (ENSSFOG00015023426)	ENSSFOG00015023440	idh1 (ENSSFOG00015023448) #22	PLEKHM3 (ENSSFOG00015023455) #31	ENSSFOG00015023459	ccnyl1 (ENSSFOG00015023466) ##33	mettl21a (ENSSFOG00015023473) #34	CREB1 (ENSSFOG00015011346) #35	KLF7 (ENSSFOG00015023491) #36	ENSSFOG00015030572	zgc:162396 (ENSSFOG00015023495)	zgc:162396 (ENSSFOG00015023503)	ENSSFOG00015027079	ENSSFOG00015031043	ENSSFOG00015031304	ENSSFOG00015027479	H2BC7 (ENSSFOG00015031099)	si:dkey-261m9.17 (ENSSFOG00015026224)
Clupeocephala	ANCESTRAL SPECIES	61	ENSGT00390000005727.b	ENSGT00390000006350	ENSGT01050000244956.b	ENSGT00530000063609.a	ENSGT00940000177416	ENSGT00940000158407	ENSGT00390000008096.B.e.a	ENSGT00940000155792	ENSGT00470000042284	ENSGT00940000160342	ENSGT00940000162599	ENSGT00940000166096	ENSGT00510000047481	ENSGT00390000003033	ENSGT00940000165242	ENSGT00390000012547.b #22	ENSGT00940000159743 #31	ENSGT00940000162639 #32	ENSGT00940000154453.a.b.a.a.a ##33	ENSGT00940000155408.o.a #35	ENSGT00940000155235.k.a #36	ENSGT00940000178681	ENSGT00940000163794	ENSGT00940000165586.a	ENSGT00940000154349	ENSGT00940000159224.a	ENSGT00940000156332	ENSGT00940000157211.l	ENSGT00390000010354	ENSGT00940000156353.u.a	ENSGT00940000159094.f #20
Otomorpha	ANCESTRAL SPECIES	342												ENSGT00940000166096	ENSGT00510000047481	ENSGT00390000003033	ENSGT00940000165242	ENSGT00390000012547.b #22	ENSGT00940000159743 #31	ENSGT00940000162639 #32	ENSGT00940000154453.a.b.a.a.a ##33	ENSGT00940000155408.o.a #35	ENSGT00940000155235.k.a #36	ENSGT00940000178681	ENSGT00940000163794	ENSGT00940000165586.a	ENSGT00940000159224.a	ENSGT00940000156332	ENSGT00940000157211.l	ENSGT00390000010354	ENSGT00940000156353.u.a	ENSGT00940000159094.f #20
Clupeiformes	ANCESTRAL SPECIES	384												ENSGT00940000166096	ENSGT00510000047481	ENSGT00390000003033	ENSGT00940000165242	ENSGT00390000012547.b #22	ENSGT00940000159743 #31	ENSGT00940000161191.B	ENSGT00940000154453.a.b.a.a.a ##33	ENSGT00940000155408.o.a #35	ENSGT00940000155235.k.a #36	ENSGT00940000165586.a	ENSGT00940000159224.a
Denticle herring	MODERN SPECIES	12	ENSDCDG00000033488	ENSDCDG00000033491	actr3 (ENSDCDG00000033512)	ENSDCDG00000033821	ENSDCDG00000034555	ddx18 (ENSDCDG00000034704)	ccdc93 (ENSDCDG00000034741)	insig2 (ENSDCDG00000034849)	C1QL2 (ENSDCDG00000034850)	ENSDCDG00000034851	dbi (ENSDCDG00000034852)	rab5b (ENSDCDG00000034854)	dbr1 (ENSDCDG00000034859)	armc8 (ENSDCDG00000034867)	ENSDCDG00000035004	idh1 (ENSDCDG00000035020) #22	PLEKHM3 (ENSDCDG00000035092) #31	ENSDCDG00000035094	ccnyl1 (ENSDCDG00000035108) ##33	creb1b (ENSDCDG00000035137) #35	klf7b (ENSDCDG00000035138) #36	ENSDCDG00000035139	zgc:162780 (ENSDCDG00000035140)	ramp1 (ENSDCDG00000035141)	epb41l5 (ENSDCDG00000035144)	LIX1L (ENSDCDG00000035149)	afp4 (ENSDCDG00000035151)	vps72a (ENSDCDG00000035152)	mrpl9 (ENSDCDG00000035154)	sema6d (ENSDCDG00000035200)	ENSDCDG00000035312
Atlantic herring	MODERN SPECIES	11	ENSCHAG00000010246	ENSCHAG00000010278	LACC1 (ENSCHAG00000010303)	ENOX1 (ENSCHAG00000010315)	dnajc15 (ENSCHAG00000010734)	ENSCHAG00000010737	ENSCHAG00000010767	AKAP11 (ENSCHAG00000010780)	DGKH (ENSCHAG00000010814)	ENSCHAG00000011245	vwa8 (ENSCHAG00000011274)	uchl3 (ENSCHAG00000011554)	ccdc93 (ENSCHAG00000011620)	CLN5 (ENSCHAG00000011784)	PLEKHM3 (ENSCHAG00000011790) #31	idh1 (ENSCHAG00000011802) #22	armc8 (ENSCHAG00000012456)	dbr1 (ENSCHAG00000014689)	rab5b (ENSCHAG00000014710)	ENSCHAG00000014724	ENSCHAG00000014734	ENSCHAG00000014741	ENSCHAG00000014850	mycbp2 (ENSCHAG00000015025)	ENSCHAG00000020927	tnfrsfa (ENSCHAG00000020945)	mzt2b (ENSCHAG00000020982)	rfc2 (ENSCHAG00000021012)	epb41l5 (ENSCHAG00000021611)	c9 (ENSCHAG00000021678)	ENSCHAG00000021681
Otophysi	ANCESTRAL SPECIES	98	ENSGT00390000001083	ENSGT00950000182808.a.a.a.a.a	ENSGT00390000007644	ENSGT00940000163874	ENSGT00940000158318	ENSGT00980000203459	ENSGT00950000182906.b.b	ENSGT00390000016696	ENSGT00940000162599	ENSGT00940000160342.e	ENSGT00470000042284	ENSGT00940000166096	ENSGT00510000047481	ENSGT00390000003033	ENSGT00940000165242	ENSGT00390000012547.b #22	ENSGT00940000159743 #31	ENSGT00940000162639 #32	ENSGT00940000154453.a.b.a.a.a ##33	ENSGT00940000155408.o.a #35	ENSGT00940000155235.k.a #36	ENSGT00940000178681	ENSGT00940000163794	ENSGT00940000165586.a	ENSGT00940000159224.a	ENSGT00940000156332	ENSGT00940000157211.l	ENSGT00390000010354	ENSGT00940000156353.u.a	ENSGT00940000159094.f #20	ENSGT01030000234621.F.d
Cyprinoidei	ANCESTRAL SPECIES	71	ENSGT00950000182808.a.a.a.a.a	ENSGT00940000166466.e.a	ENSGT00390000007644	ENSGT00940000163874	ENSGT00940000158318	ENSGT00980000203459	ENSGT00950000182906.b.b	ENSGT00390000016696	ENSGT00940000162599	ENSGT00940000160342.e	ENSGT00470000042284	ENSGT00940000166096	ENSGT00510000047481	ENSGT00390000003033	ENSGT00940000165242	ENSGT00390000012547.b #22	ENSGT00940000159743 #31	ENSGT00940000162639 #32	ENSGT00940000154453.a.b.a.a.a ##33	ENSGT00940000155408.o.a #35	ENSGT00940000155235.k.a #36	ENSGT00940000178681	ENSGT00940000163794	ENSGT00940000165586.a	ENSGT00940000159224.a	ENSGT00940000156332	ENSGT00940000157211.l	ENSGT00390000010354	ENSGT01000000221562	ENSGT00940000156353.u.a	ENSGT00940000159094.f #20
Cyprininae	DUPLICATION
Cyprininae	ANCESTRAL SPECIES	421									ENSGT00940000162599.a	ENSGT00940000160342.e.a	ENSGT00470000042284.a	ENSGT00940000166096.c	ENSGT00510000047481.h	ENSGT00390000003033.e	ENSGT00940000165242.h.b	ENSGT00390000012547.b.k #22	ENSGT00940000159743.b #31	ENSGT00940000162639.d #32	ENSGT00940000154453.a.b.a.a.a.d.b ##33	ENSGT00940000155408.o.a.b #35	ENSGT00940000155235.k.a.a #36	ENSGT00940000178681	ENSGT00940000163794.t	ENSGT00940000165586.a.j	ENSGT00940000159224.a.c.b	ENSGT00940000156332.w	ENSGT00940000157211.l.e	ENSGT00390000010354.f	ENSGT00940000156353.u.a.d	ENSGT00940000159094.f.d #20	ENSGT01030000234621.F.d.a
Goldfish	DUPLICATION
Goldfish	MODERN SPECIES	49	ENSCARG00000008149	ASIC4 (ENSCARG00000008153)	ENSCARG00000008182	gmppaa (ENSCARG00000008196)	ENSCARG00000008237	ENSCARG00000008250	dars1 (ENSCARG00000008291)	cxcr4b (ENSCARG00000008619)	THSD7B (ENSCARG00000008641)	hnmt (ENSCARG00000008777)	spopla (ENSCARG00000008804)	NXPH2 (ENSCARG00000008838)	ugt1a2 (ENSCARG00000008848)	ENSCARG00000008883	igsf3 (ENSCARG00000008887)	idh1 (ENSCARG00000008906) #22	PLEKHM3 (ENSCARG00000008996) #31	ccnyl1 (ENSCARG00000009019) ##33	creb1b (ENSCARG00000009031) #35	klf7b (ENSCARG00000009055) #36	zgc:162396 (ENSCARG00000009075)	zgc:162780 (ENSCARG00000009082)	ENSCARG00000009190	hao2 (ENSCARG00000012074)	ENSCARG00000012090	ENSCARG00000012100	pla1a (ENSCARG00000012110)	popdc2 (ENSCARG00000012124)	ska3 (ENSCARG00000012149)	ENSCARG00000012192	ENSCARG00000012207
Goldfish	MODERN SPECIES	2528																idh1 (ENSCARG00000054347) #22	PLEKHM3 (ENSCARG00000054684) #31	fzd5 (ENSCARG00000054708) #32
Cyprininae_a	ANCESTRAL SPECIES	425								ENSGT00390000016696.h	ENSGT00940000162599.b	ENSGT00940000160342.e.a	ENSGT00470000042284.a	ENSGT00940000166096.c	ENSGT00510000047481.h	ENSGT00390000003033.e	ENSGT00940000165242.h.b	ENSGT00390000012547.b.k #22	ENSGT00940000159743.b #31	ENSGT00940000162639.d #32	ENSGT00940000154453.a.b.a.a.a.d.b ##33	ENSGT00940000155408.o.a.b #35	ENSGT00940000155235.k.a.a #36	ENSGT00940000163794.t	ENSGT00940000165586.a.j	ENSGT00940000159224.a.c.b	ENSGT00940000156332.w	ENSGT00940000157211.l.e	ENSGT00390000010354.f	ENSGT00940000156353.u.a.d
Common carp reference	MODERN SPECIES	46	ENSCCRG00000080738	slc10a2 (ENSCCRG00000014101)	nepro (ENSCCRG00000014097)	ENSCCRG00000014090	poglut2 (ENSCCRG00000055120)	ENSCCRG00000078112	stxbp5l (ENSCCRG00000028134)	gtf2e1 (ENSCCRG00000006759)	lcmt2 (ENSCCRG00000006763)	crygs2 (ENSCCRG00000006767)	tbccd1 (ENSCCRG00000023688)	rab5b (ENSCCRG00000056165)	dbr1 (ENSCCRG00000066411)	armc8 (ENSCCRG00000023590)	ENSCCRG00000065082	idh1 (ENSCCRG00000045459) #22	fzd5 (ENSCCRG00000055353) #32	ccnyl1 (ENSCCRG00000009722) ##33	creb1b (ENSCCRG00000058435) #35	PLEKHM3 (ENSCCRG00000009711) #31	klf7b (ENSCCRG00000009770) #36	ENSCCRG00000081845	ENSCCRG00000071648	zgc:162396 (ENSCCRG00000060012)	zgc:162780 (ENSCCRG00000032512)	ramp1 (ENSCCRG00000069316)	epb41l5 (ENSCCRG00000007840)	ptpn4a (ENSCCRG00000055603)	tmem177 (ENSCCRG00000078708)	ENSCCRG00000007865	ENSCCRG00000058810
Golden-line barbel	MODERN SPECIES	437								gtf2e1 (ENSSGRG00000055277)	lcmt2 (ENSSGRG00000055276)	crygs2 (ENSSGRG00000055275)	tbccd1 (ENSSGRG00000055274)	rab5b (ENSSGRG00000055273)	dbr1 (ENSSGRG00000055272)	armc8 (ENSSGRG00000055269)	ENSSGRG00000055256	idh1 (ENSSGRG00000055252) #22	PLEKHM3 (ENSSGRG00000055251) #31	fzd5 (ENSSGRG00000055250) #32	ccnyl1 (ENSSGRG00000055248) ##33	creb1b (ENSSGRG00000055244) #35	klf7b (ENSSGRG00000055243) #36	zgc:162396 (ENSSGRG00000055242)	zgc:162780 (ENSSGRG00000055241)	epb41l5 (ENSSGRG00000055239)	ptpn4a (ENSSGRG00000055234)	MRAS (ENSSGRG00000055233)
Cyprininae	ANCESTRAL SPECIES	16	ENSGT00940000155868.f.b.b	ENSGT00390000001083	ENSGT00950000182808.a.a.a.a.a.h	ENSGT00390000007644.c	ENSGT00940000163874	ENSGT00940000158318	ENSGT00950000182906.b.b.j	ENSGT00950000182906.b.b.i	ENSGT00390000016696.g	ENSGT00940000160342.e.b	ENSGT00470000042284.b	ENSGT00940000166096.d	ENSGT00510000047481.g	ENSGT00390000003033.f	ENSGT00940000165242.g	ENSGT00390000012547.b.l #22	ENSGT00940000159743.a #31	ENSGT00940000162639.c #32	ENSGT00940000154453.a.b.a.a.a.d.a ##33	ENSGT00940000155408.o.a.a #35	ENSGT00940000155235.k.a.b #36	ENSGT00940000163794.s	ENSGT00940000165586.a.i	ENSGT00940000159224.a.c.a	ENSGT00940000156332.x	ENSGT00940000157211.l.f	ENSGT01000000221562	ENSGT00940000156353.u.a.c	ENSGT00940000159094.f.c #20	ENSGT01030000234621.F.d.b	ENSGT00950000183071.a.a.a.e.b.h.b
Cyprininae_a	ANCESTRAL SPECIES	263			ENSGT00950000182808.a.a.a.a.a.h	ENSGT00390000007644.c	ENSGT00940000163874	ENSGT00940000158318.a	ENSGT00950000182906.b.b.i	ENSGT00390000016696.g	ENSGT00940000162599.a	ENSGT00940000160342.e.b	ENSGT00470000042284.b	ENSGT00940000166096.d	ENSGT00510000047481.g	ENSGT00390000003033.f	ENSGT00940000165242.g	ENSGT00390000012547.b.l #22	ENSGT00940000159743.a #31	ENSGT00940000162639.c #32	ENSGT00940000154453.a.b.a.a.a.d.a ##33	ENSGT00940000155408.o.a.a #35	ENSGT00940000155235.k.a.b #36	ENSGT00940000178681	ENSGT00940000163794.s	ENSGT00940000165586.a.i	ENSGT00940000159224.a.c.a	ENSGT00940000156332.x	ENSGT00940000157211.l.f	ENSGT00940000156353.u.a.c	ENSGT00940000159094.f.c #20	ENSGT01030000234621.F.d.b	ENSGT00950000183071.a.a.a.e.b.h.b
Common carp reference	MODERN SPECIES	41	gtdc1 (ENSCCRG00000028168)	arglu1a (ENSCCRG00000060356)	efnb2a (ENSCCRG00000074165)	ENSCCRG00000062032	gtpbp8 (ENSCCRG00000055105)	slc10a2 (ENSCCRG00000006965)	tlr20.2 (ENSCCRG00000081428)	stxbp5l (ENSCCRG00000006964)	gtf2e1 (ENSCCRG00000028740)	crygs2 (ENSCCRG00000028289)	tbccd1 (ENSCCRG00000023575)	rab5b (ENSCCRG00000067152)	dbr1 (ENSCCRG00000023585)	armc8 (ENSCCRG00000031008)	ENSCCRG00000009637	idh1 (ENSCCRG00000042062) #22	PLEKHM3 (ENSCCRG00000053344) #31	fzd5 (ENSCCRG00000009717) #32	ccnyl1 (ENSCCRG00000017631) ##33	creb1b (ENSCCRG00000080481) #35	klf7b (ENSCCRG00000017608) #36	ENSCCRG00000079145	zgc:162780 (ENSCCRG00000076123)	ramp1 (ENSCCRG00000072552)	epb41l5 (ENSCCRG00000010102)	ptpn4a (ENSCCRG00000009957)	ENSCCRG00000073082	tmem177 (ENSCCRG00000007859)	pth2ra (ENSCCRG00000009944) #20	OXGR1 (ENSCCRG00000081838)	hs6st3b (ENSCCRG00000080155)
Golden-line barbel	MODERN SPECIES	245	ENSSGRG00000009226	slc10a2 (ENSSGRG00000009225)	tlr20.2 (ENSSGRG00000009224)	nepro (ENSSGRG00000009222)	ENSSGRG00000009220	poglut2 (ENSSGRG00000009219)	stxbp5l (ENSSGRG00000007911)	gtf2e1 (ENSSGRG00000007890)	lcmt2 (ENSSGRG00000007889)	crygs2 (ENSSGRG00000007888)	tbccd1 (ENSSGRG00000007887)	rab5b (ENSSGRG00000007883)	dbr1 (ENSSGRG00000007882)	armc8 (ENSSGRG00000004578)	ENSSGRG00000004382	idh1 (ENSSGRG00000004370) #22	PLEKHM3 (ENSSGRG00000004353) #31	fzd5 (ENSSGRG00000004351) #32	creb1b (ENSSGRG00000003889) #35	klf7b (ENSSGRG00000003881) #36
Goldfish	MODERN SPECIES	27	ENSCARG00000046707	gtpbp8 (ENSCARG00000046699)	slc10a2 (ENSCARG00000046667)	tlr20.2 (ENSCARG00000046638)	ENSCARG00000046628	ENSCARG00000046617	stxbp5l (ENSCARG00000046351)	gtf2e1 (ENSCARG00000046283)	crygs2 (ENSCARG00000046258)	tbccd1 (ENSCARG00000046247)	rab5b (ENSCARG00000046225)	dbr1 (ENSCARG00000046187)	ENSCARG00000046167	armc8 (ENSCARG00000044069)	ENSCARG00000043684	idh1 (ENSCARG00000043124) #22	PLEKHM3 (ENSCARG00000043070) #31	fzd5 (ENSCARG00000043055) #32	ccnyl1 (ENSCARG00000043035) ##33	creb1b (ENSCARG00000042956) #35	ENSCARG00000042942	ENSCARG00000042932	klf7b (ENSCARG00000042858) #36	zgc:162396 (ENSCARG00000042830)	zgc:162780 (ENSCARG00000042820)	ramp1 (ENSCARG00000042805)	epb41l5 (ENSCARG00000042513)	ENSCARG00000042443	ptpn4a (ENSCARG00000042140)	ENSCARG00000042065	MRAS (ENSCARG00000042029)
Zebrafish	MODERN SPECIES	24	ENSDARG00000030636	poglut2 (ENSDARG00000031971)	ENSDARG00000094791	stxbp5l (ENSDARG00000006383)	gtf2e1 (ENSDARG00000000542)	lcmt2 (ENSDARG00000000747)	crygs2 (ENSDARG00000041171)	tbccd1 (ENSDARG00000056886)	rab5b (ENSDARG00000016059)	ENSDARG00000094291	ENSDARG00000056907	ENSDARG00000056917	dbr1 (ENSDARG00000056923)	armc8 (ENSDARG00000062258)	ENSDARG00000069560	idh1 (ENSDARG00000025375) #22	PLEKHM3 (ENSDARG00000030633) #31	fzd5 (ENSDARG00000025420) #32	ccnyl1 (ENSDARG00000099692) ##33	creb1b (ENSDARG00000093420) #35	klf7b (ENSDARG00000043821) #36	ENSDARG00000094554	ENSDARG00000093998	ENSDARG00000093465	zgc:162396 (ENSDARG00000069549)	zgc:162780 (ENSDARG00000069548)	ramp1 (ENSDARG00000056704)	epb41l5 (ENSDARG00000032324)	ptpn4a (ENSDARG00000000631)	tmem177 (ENSDARG00000069301)	MRAS (ENSDARG00000075285)
Characiphysae	ANCESTRAL SPECIES	76	ENSGT00390000001083	ENSGT00950000182808.a.a.a.a.a	ENSGT00390000007644	ENSGT00940000163874	ENSGT00940000158318	ENSGT00980000203459	ENSGT00950000182906.b.b	ENSGT00390000016696	ENSGT00940000162599	ENSGT00940000160342.e	ENSGT00470000042284	ENSGT00940000166096	ENSGT00510000047481	ENSGT00390000003033	ENSGT00940000165242	ENSGT00390000012547.b #22	ENSGT00940000159743 #31	ENSGT00940000162639 #32	ENSGT00940000154453.a.b.a.a.a ##33	ENSGT00940000155408.o.a #35	ENSGT00940000155235.k.a #36	ENSGT00940000178681	ENSGT00940000163794.q	ENSGT00940000163794.r	ENSGT00940000165586.a	ENSGT00940000159224.a	ENSGT00940000156332	ENSGT00940000157211.l	ENSGT00390000010354	ENSGT00940000156353.u.a	ENSGT00940000159094.f #20
Channel catfish	MODERN SPECIES	25	ENSIPUG00000023806	ENSIPUG00000023804	Slc10a2 (ENSIPUG00000023801)	nepro (ENSIPUG00000023796)	tex30 (ENSIPUG00000023795)	kdelc1 (ENSIPUG00000023791)	stxbp5l (ENSIPUG00000023779)	gtf2e1 (ENSIPUG00000023774)	lcmt2 (ENSIPUG00000023772)	crygs (ENSIPUG00000023764)	tbccd1 (ENSIPUG00000023760)	RAB5B (ENSIPUG00000023753)	dbr1 (ENSIPUG00000023749)	armc8 (ENSIPUG00000023744)	ENSIPUG00000023740	idh1 (ENSIPUG00000023732) #22	PLEKHM3 (ENSIPUG00000023726) #31	fzd5 (ENSIPUG00000023723) #32	ccnyl1 (ENSIPUG00000023709) ##33	creb1 (ENSIPUG00000023702) #35	klf7b (ENSIPUG00000023698) #36	nifk (ENSIPUG00000023690)	clasp1a (ENSIPUG00000023671)	tfcp2l1 (ENSIPUG00000023667)	ENSIPUG00000023665	ENSIPUG00000023664	gli2 (ENSIPUG00000023662)	inhbb (ENSIPUG00000023661)	ENSIPUG00000023659	ralb (ENSIPUG00000023656)	ENSIPUG00000023652
Characiphysae_b	ANCESTRAL SPECIES	82	ENSGT00390000001083	ENSGT00950000182808.a.a.a.a.a	ENSGT00390000007644	ENSGT00940000163874	ENSGT00940000158318	ENSGT00980000203459	ENSGT00950000182906.b.b	ENSGT00390000016696	ENSGT00940000160342.e	ENSGT00940000162599	ENSGT00470000042284	ENSGT00940000166096	ENSGT00510000047481	ENSGT00390000003033	ENSGT00940000165242	ENSGT00390000012547.b #22	ENSGT00940000159743 #31	ENSGT00940000161191.B	ENSGT00940000154453.a.b.a.a.a ##33	ENSGT00940000155408.o.a #35	ENSGT00940000155235.k.a #36	ENSGT00940000178681	ENSGT00940000163794.q	ENSGT00940000163794.r	ENSGT00940000165586.a	ENSGT00940000159224.a	ENSGT00940000156332	ENSGT00940000157211.l	ENSGT00390000010354	ENSGT00940000156353.u.a	ENSGT00940000159094.f #20
Electric eel	MODERN SPECIES	22	tbl1x (ENSEEEG00000018342)	si:ch211-165i18.2 (ENSEEEG00000018420)	GPR143 (ENSEEEG00000018421)	gtpbp8 (ENSEEEG00000018422)	nepro (ENSEEEG00000018450)	poglut2 (ENSEEEG00000018460)	stxbp5l (ENSEEEG00000018514)	gtf2e1 (ENSEEEG00000018634)	lcmt2 (ENSEEEG00000018635)	ENSEEEG00000018637	tbccd1 (ENSEEEG00000018638)	rab5b (ENSEEEG00000018641)	dbr1 (ENSEEEG00000018643)	armc8 (ENSEEEG00000018647)	ENSEEEG00000018708	idh1 (ENSEEEG00000018742) #22	PLEKHM3 (ENSEEEG00000018978) #31	ENSEEEG00000018980 #32	ccnyl1 (ENSEEEG00000018984) ##33	creb1b (ENSEEEG00000018990) #35	klf7b (ENSEEEG00000018997) #36	zgc:162396 (ENSEEEG00000019000)	zgc:162780 (ENSEEEG00000019002)	ramp1 (ENSEEEG00000019006)	epb41l5 (ENSEEEG00000019007)	ptpn4a (ENSEEEG00000019009)	tmem177 (ENSEEEG00000019013)	MRAS (ENSEEEG00000019014)	pth2ra (ENSEEEG00000019015) #20	ENSEEEG00000019017	gli2a (ENSEEEG00000019021)
Characoidei	ANCESTRAL SPECIES	123	ENSGT00390000001083	ENSGT00950000182808.a.a.a.a.a	ENSGT00390000007644	ENSGT00940000163874	ENSGT00940000158318	ENSGT00980000203459	ENSGT00950000182906.b.b	ENSGT00390000016696	ENSGT00940000160342.e	ENSGT00940000162599	ENSGT00470000042284	ENSGT00940000166096	ENSGT00510000047481	ENSGT00390000003033	ENSGT00940000165242	ENSGT00390000012547.b #22	ENSGT00940000159743 #31	ENSGT00940000161191.B	ENSGT00940000154453.a.b.a.a.a ##33	ENSGT00940000155408.o.a #35	ENSGT00940000155235.k.a #36	ENSGT00940000178681	ENSGT00940000163794.q	ENSGT00940000163794.r	ENSGT00940000165586.a	ENSGT00940000159224.a	ENSGT00940000156332	ENSGT00940000157211.l	ENSGT00390000010354	ENSGT00940000156353.u.a	ENSGT00940000159094.f #20
Mexicana tetra	MODERN SPECIES	10	gtpbp8 (ENSAMXG00000014566)	slc10a2 (ENSAMXG00000014586)	ENSAMXG00000043131	nepro (ENSAMXG00000014664)	ENSAMXG00000039195	poglut2 (ENSAMXG00000014717)	stxbp5l (ENSAMXG00000014830)	gtf2e1 (ENSAMXG00000030823)	crygs2 (ENSAMXG00000014976)	lcmt2 (ENSAMXG00000014916)	tbccd1 (ENSAMXG00000036543)	rab5b (ENSAMXG00000014983)	dbr1 (ENSAMXG00000030736)	armc8 (ENSAMXG00000015101)	ENSAMXG00000015182	idh1 (ENSAMXG00000015280) #22	PLEKHM3 (ENSAMXG00000015306) #31	ENSAMXG00000026259	ccnyl1 (ENSAMXG00000015352) ##33	creb1b (ENSAMXG00000040978) #35	klf7b (ENSAMXG00000015449) #36	ENSAMXG00000043008	ENSAMXG00000031822	zgc:162396 (ENSAMXG00000037578)	zgc:162396 (ENSAMXG00000030552)	zgc:162780 (ENSAMXG00000040257)	ramp1 (ENSAMXG00000037528)	epb41l5 (ENSAMXG00000010854)	ptpn4a (ENSAMXG00000010885)	tmem177 (ENSAMXG00000039287)	MRAS (ENSAMXG00000033764)
Red-bellied piranha	DUPLICATION
Red-bellied piranha	MODERN SPECIES	2406																ENSPNAG00000016494 #22
Red-bellied piranha	MODERN SPECIES	88	gtpbp8 (ENSPNAG00000024943)	slc10a2 (ENSPNAG00000006311)	nepro (ENSPNAG00000024981)	ENSPNAG00000024991	poglut2 (ENSPNAG00000025035)	ENSPNAG00000005194	stxbp5l (ENSPNAG00000025420)	gtf2e1 (ENSPNAG00000005342)	crygs2 (ENSPNAG00000007074)	lcmt2 (ENSPNAG00000006606)	tbccd1 (ENSPNAG00000025549)	rab5b (ENSPNAG00000025574)	dbr1 (ENSPNAG00000025595)	armc8 (ENSPNAG00000025710)	ENSPNAG00000006768	idh1 (ENSPNAG00000025794) #22	PLEKHM3 (ENSPNAG00000025800) #31	ENSPNAG00000025811	ccnyl1 (ENSPNAG00000025879) ##33	creb1b (ENSPNAG00000025949) #35	klf7b (ENSPNAG00000005674) #36	ENSPNAG00000025990	zgc:162396 (ENSPNAG00000004920)	zgc:162396 (ENSPNAG00000026074)	zgc:162780 (ENSPNAG00000026108)	ramp1 (ENSPNAG00000004965)	epb41l5 (ENSPNAG00000026135)	ptpn4a (ENSPNAG00000007077)	tmem177 (ENSPNAG00000026272)	MRAS (ENSPNAG00000026295)	pth2ra (ENSPNAG00000026419) #20
Euteleosteomorpha	ANCESTRAL SPECIES	29	ENSGT00390000005727.b	ENSGT00390000006350	ENSGT01050000244956.b	ENSGT00530000063609.a	ENSGT00940000177416	ENSGT00940000158407	ENSGT00390000008096.B.e.a	ENSGT00940000155792	ENSGT00470000042284	ENSGT00940000160342.g.b	ENSGT00940000162599	ENSGT00940000166096	ENSGT00510000047481	ENSGT00390000003033	ENSGT00940000165242	ENSGT00390000012547.b #22	ENSGT00940000159743 #31	ENSGT00940000162639 #32	ENSGT00940000154453.a.b.a.a.a ##33	ENSGT00940000155408.o.a #35	ENSGT00940000155235.k.a #36	ENSGT00940000178681	ENSGT00940000163794	ENSGT00940000165586.a	ENSGT00940000154349	ENSGT00940000159224.a	ENSGT00940000156332	ENSGT00940000157211.l	ENSGT00390000010354	ENSGT00940000156353.u.a	ENSGT00940000159094.f #20
Acanthomorphata	ANCESTRAL SPECIES	5	ENSGT00390000005727.b	ENSGT00390000006350	ENSGT01050000244956.b	ENSGT00530000063609.a	ENSGT00940000177416	ENSGT00940000158407	ENSGT00390000008096.B.e.a	ENSGT00940000155792	ENSGT00470000042284	ENSGT00940000160342.g.b	ENSGT00940000162599	ENSGT00940000166096	ENSGT00510000047481	ENSGT00390000003033	ENSGT00940000165242.c	ENSGT00390000012547.b #22	ENSGT00390000013820	ENSGT01070000253816.a.a.b	ENSGT00940000153313.B	ENSGT00940000158106	ENSGT00390000006601	ENSGT00390000011709.gb	ENSGT00940000158556	ENSGT00950000182827.A	ENSGT00940000164470.a	ENSGT00940000155202	ENSGT00940000154517.mb	ENSGT00530000063528.B	ENSGT00940000166292	ENSGT00940000166446	ENSGT00990000203619.A.a
Cod	MODERN SPECIES	12	SF3B1 (ENSGMOG00000006773)	hspd1 (ENSGMOG00000006801)	coq10b (ENSGMOG00000034755)	mob4 (ENSGMOG00000006816)	rftn2 (ENSGMOG00000006824)	ENSGMOG00000034812	satb2 (ENSGMOG00000024031)	dnajb11 (ENSGMOG00000006890)	ENSGMOG00000006900	CRYGS (ENSGMOG00000023223)	rab5b (ENSGMOG00000006918)	dbr1 (ENSGMOG00000006925)	armc8 (ENSGMOG00000006940)	ENSGMOG00000033757	ENSGMOG00000019406	idh1 (ENSGMOG00000006982) #22	ENSGMOG00000034114	ENSGMOG00000035585	AKAP11 (ENSGMOG00000032401)	DGKH (ENSGMOG00000007040)	vwa8 (ENSGMOG00000007060)	rgcc (ENSGMOG00000003645)	f5 (ENSGMOG00000031996)	f5 (ENSGMOG00000034559)	f5 (ENSGMOG00000031050)	slc35a5 (ENSGMOG00000007111)	ccdc80 (ENSGMOG00000031614)	ENSGMOG00000007134	fundc1 (ENSGMOG00000007162)	ENSGMOG00000007170	ENSGMOG00000009640
Euacanthomorphacea	ANCESTRAL SPECIES	15	ENSGT00390000005727.b	ENSGT00390000006350	ENSGT01050000244956.b	ENSGT00530000063609.a	ENSGT00940000177416	ENSGT00940000158407	ENSGT00390000008096.B.e.a	ENSGT00940000155792	ENSGT00470000042284	ENSGT00940000160342.g.b	ENSGT00940000162599	ENSGT00940000166096	ENSGT00510000047481	ENSGT00390000003033	ENSGT00940000165242.c	ENSGT00390000012547.b #22	ENSGT00390000013820	ENSGT01070000253816.a.a.b	ENSGT00940000153313.B	ENSGT00940000158106	ENSGT00390000006601	ENSGT00390000011709.gb	ENSGT00940000158556	ENSGT00950000182827.A	ENSGT00940000164470.a	ENSGT00940000155202	ENSGT00940000154517.mb	ENSGT00530000063528.B	ENSGT00940000166292	ENSGT00940000166446	ENSGT00990000203619.A.a
Pinecone sodierfish	MODERN SPECIES	13	hspe1 (ENSMMDG00005013681)	MOB4 (ENSMMDG00005013679)	rftn2 (ENSMMDG00005013675)	ENSMMDG00005025042	PLCL1 (ENSMMDG00005025041)	ENSMMDG00005025040	satb2 (ENSMMDG00005025039)	dnajb11 (ENSMMDG00005025038)	tbccd1 (ENSMMDG00005025037)	CRYGS (ENSMMDG00005025036)	lcmt2 (ENSMMDG00005025035)	rab5b (ENSMMDG00005025034)	dbr1 (ENSMMDG00005025033)	armc8 (ENSMMDG00005025024)	ENSMMDG00005025023	idh1 (ENSMMDG00005024964) #22	TNFSF11 (ENSMMDG00005024963)	ENSMMDG00005024962	DGKH (ENSMMDG00005024961)	vwa8 (ENSMMDG00005024960)	rgcc (ENSMMDG00005024959)	ENSMMDG00005024958	f5 (ENSMMDG00005024951)	slc35a5 (ENSMMDG00005024950)	ccdc80 (ENSMMDG00005024949)	ENSMMDG00005024947	ENSMMDG00005024946	DIPK2B (ENSMMDG00005024945)	KDM6A (ENSMMDG00005024287)	fundc1 (ENSMMDG00005024199)	efhc2 (ENSMMDG00005024196)
Percomorphaceae	ANCESTRAL SPECIES	47	ENSGT00390000005727.b	ENSGT00390000006350	ENSGT01050000244956.b	ENSGT00530000063609.a	ENSGT00940000177416	ENSGT00940000158407	ENSGT00390000008096.B.e.a	ENSGT00940000155792	ENSGT00470000042284	ENSGT00940000160342.g.b	ENSGT00940000162599	ENSGT00940000166096	ENSGT00510000047481	ENSGT00390000003033	ENSGT00940000165242.c	ENSGT00390000012547.b #22	ENSGT00390000013820	ENSGT01070000253816.a.a.b	ENSGT00940000153313.B	ENSGT00940000158106	ENSGT00390000006601	ENSGT00390000011709.gb	ENSGT00940000158556	ENSGT00950000182827.A	ENSGT00940000164470.a	ENSGT00940000155202	ENSGT00940000154517.mb	ENSGT00530000063528.B	ENSGT00940000166292	ENSGT00940000166446	ENSGT00990000203619.A.a
Tiger tail seahorse	DUPLICATION
Tiger tail seahorse	MODERN SPECIES	140				PLCL1 (ENSHCOG00000004445)	satb2 (ENSHCOG00000004316)	dnajb11 (ENSHCOG00000004275)	tbccd1 (ENSHCOG00000004241)	crygs1 (ENSHCOG00000004229)	ENSHCOG00000004226	ENSHCOG00000004196	rab5b (ENSHCOG00000004191)	dbr1 (ENSHCOG00000004179)	armc8 (ENSHCOG00000004160)	ENSHCOG00000004103	ENSHCOG00000003918	idh1 (ENSHCOG00000003904) #22	ENSHCOG00000003880	ENSHCOG00000003874	AKAP11 (ENSHCOG00000003860)	DGKH (ENSHCOG00000003845)	ENSHCOG00000003792	rgcc (ENSHCOG00000003759)	ENSHCOG00000003748	ENSHCOG00000003714
Tiger tail seahorse	MODERN SPECIES	527																idh1 (ENSHCOG00000012581) #22
Percomorphaceae_B	ANCESTRAL SPECIES	26	ENSGT00390000005727.b	ENSGT00390000006350	ENSGT01050000244956.b	ENSGT00530000063609.a	ENSGT00940000177416	ENSGT00940000158407	ENSGT00390000008096.B.e.a	ENSGT00940000155792	ENSGT00470000042284	ENSGT00940000160342.g.b	ENSGT00940000162599	ENSGT00940000166096	ENSGT00510000047481	ENSGT00390000003033	ENSGT00940000165242.c	ENSGT00390000012547.b #22	ENSGT00390000013820	ENSGT01070000253816.a.a.b	ENSGT00940000153313.B	ENSGT00940000158106	ENSGT00390000006601	ENSGT00390000011709.gb	ENSGT00940000158556	ENSGT00950000182827.A	ENSGT00940000164470.a	ENSGT00940000155202	ENSGT00940000154517.mb	ENSGT00530000063528.B	ENSGT00940000166292	ENSGT00940000166446	ENSGT00990000203619.A.a
Percomorphaceae_C	ANCESTRAL SPECIES	13	ENSGT00390000005727.b	ENSGT00390000006350	ENSGT01050000244956.b	ENSGT00530000063609.a	ENSGT00940000177416	ENSGT00940000158407	ENSGT00390000008096.B.e.a	ENSGT00940000155792	ENSGT00470000042284	ENSGT00940000160342.g.b	ENSGT00940000162599	ENSGT00940000166096	ENSGT00510000047481	ENSGT00390000003033	ENSGT00940000165242.c	ENSGT00390000012547.b #22	ENSGT00390000013820	ENSGT01070000253816.a.a.b	ENSGT00940000153313.B	ENSGT00940000158106	ENSGT00390000006601	ENSGT00390000011709.gb	ENSGT00940000158556	ENSGT00950000182827.A	ENSGT00940000164470.a	ENSGT00940000155202	ENSGT00940000154517.mb	ENSGT00530000063528.B	ENSGT00940000166292	ENSGT00940000166446	ENSGT00990000203619.A.a
Percomorphaceae_D	ANCESTRAL SPECIES	12	ENSGT00390000005727.b	ENSGT00390000006350	ENSGT01050000244956.b	ENSGT00530000063609.a	ENSGT00940000177416	ENSGT00940000158407	ENSGT00390000008096.B.e.a	ENSGT00940000155792	ENSGT00470000042284	ENSGT00940000160342.g.b	ENSGT00940000162599	ENSGT00940000166096	ENSGT00510000047481	ENSGT00390000003033	ENSGT00940000165242.c	ENSGT00390000012547.b #22	ENSGT01070000253816.a.a.b	ENSGT00940000153313.B	ENSGT00940000158106	ENSGT00390000006601	ENSGT00390000011709.gb	ENSGT00940000158556	ENSGT00950000182827.A	ENSGT00940000164470.a	ENSGT00940000155202	ENSGT00940000154517.mb	ENSGT00530000063528.B	ENSGT00940000166292	ENSGT00940000166446	ENSGT00990000203619.A.a	ENSGT01060000248589.C.g.a
Carangaria	ANCESTRAL SPECIES	12	ENSGT00390000005727.b	ENSGT00390000006350.h	ENSGT01050000244956.b	ENSGT00530000063609.a	ENSGT00940000177416	ENSGT00940000158407	ENSGT00390000008096.B.e.a	ENSGT00940000155792	ENSGT00470000042284	ENSGT00940000160342.g.b	ENSGT00940000162599	ENSGT00940000166096	ENSGT00510000047481	ENSGT00390000003033	ENSGT00940000165242.c	ENSGT00390000012547.b #22	ENSGT00390000013820	ENSGT01070000253816.a.a.b	ENSGT00940000153313.B	ENSGT00940000158106	ENSGT00390000006601	ENSGT00390000011709.gb	ENSGT00940000158556	ENSGT00950000182827.A	ENSGT00940000164470.a	ENSGT00940000155202	ENSGT00940000154517.mb	ENSGT00530000063528.B	ENSGT00940000166292	ENSGT00940000166446	ENSGT00990000203619.A.a
Pleuronectoidei	DUPLICATION
Pleuronectoidei	ANCESTRAL SPECIES																	ENSGT00390000012547.b.q #22
Tongue sole	MODERN SPECIES	219																ENSCSEG00000007166 #22
Pleuronectoidei	ANCESTRAL SPECIES	45	ENSGT00940000155367	ENSGT00390000005727.b	ENSGT00390000006350.h	ENSGT01050000244956.b	ENSGT00530000063609.a	ENSGT00940000177416	ENSGT00940000158407	ENSGT00390000008096.B.e.a	ENSGT00940000155792	ENSGT00470000042284	ENSGT00940000162599	ENSGT00940000166096	ENSGT00510000047481	ENSGT00390000003033	ENSGT00940000165242.c	ENSGT00390000012547.b.r #22	ENSGT00390000013820	ENSGT01070000253816.a.a.b	ENSGT00940000153313.B	ENSGT00940000158106	ENSGT00390000006601.r	ENSGT00390000011709.gb	ENSGT00940000158556	ENSGT00950000182827.A	ENSGT00940000164470.a	ENSGT00940000155202	ENSGT00940000154517.mb	ENSGT00530000063528.B	ENSGT00940000166292	ENSGT00940000166446	ENSGT00940000155600.b
Turbot	MODERN SPECIES	5	SF3B1 (ENSSMAG00000013977)	coq10b (ENSSMAG00000014009)	hspd1 (ENSSMAG00000014018)	mob4 (ENSSMAG00000014056)	rftn2 (ENSSMAG00000014086)	PLCL1 (ENSSMAG00000015766)	ENSSMAG00000032902	satb2 (ENSSMAG00000015799)	dnajb11 (ENSSMAG00000015925)	ENSSMAG00000015967	ENSSMAG00000016033	rab5b (ENSSMAG00000016057)	dbr1 (ENSSMAG00000016078)	armc8 (ENSSMAG00000016119)	ENSSMAG00000038066	idh1 (ENSSMAG00000014096) #22	ENSSMAG00000027027	ENSSMAG00000022333	ENSSMAG00000014138	CASK (ENSSMAG00000015722)	gpr34b (ENSSMAG00000024816)	NYX (ENSSMAG00000015702)	ddx3xa (ENSSMAG00000015674)	ENSSMAG00000015651	dnajc10 (ENSSMAG00000015551)	frzb (ENSSMAG00000015533)	dusp19a (ENSSMAG00000016328)	ENSSMAG00000016339	ENSSMAG00000016374	ENSSMAG00000016399	ENSSMAG00000016424
Tongue sole	MODERN SPECIES	7	prkra (ENSCSEG00000002954)	OSBPL6 (ENSCSEG00000002934)	cycsb (ENSCSEG00000002929)	ENSCSEG00000002906	ENSCSEG00000002899	ccdc80 (ENSCSEG00000002896)	slc35a5 (ENSCSEG00000002889)	f5 (ENSCSEG00000002876)	rgcc (ENSCSEG00000002871)	vwa8 (ENSCSEG00000002839)	lcmt2 (ENSCSEG00000002829)	rab5b (ENSCSEG00000002821)	dbr1 (ENSCSEG00000002813)	armc8 (ENSCSEG00000002786)	ENSCSEG00000002781	idh1 (ENSCSEG00000002775) #22	ENSCSEG00000002772	AKAP11 (ENSCSEG00000002767)	DGKH (ENSCSEG00000002739)	ENSCSEG00000002729	ENSCSEG00000002725	KDM6A (ENSCSEG00000001099)	fundc1 (ENSCSEG00000001014)	efhc2 (ENSCSEG00000000997)	ENSCSEG00000000990	mao (ENSCSEG00000000966)	ENSCSEG00000000959	gpr34b (ENSCSEG00000000956)	ENSCSEG00000000944	nup35 (ENSCSEG00000000938)	ddx3xa (ENSCSEG00000000900)
Carangaria_A	ANCESTRAL SPECIES	45	ENSGT00940000155367	ENSGT00390000005727.b	ENSGT00390000006350.h	ENSGT01050000244956.b	ENSGT00530000063609.a	ENSGT00940000158407	ENSGT00390000008096.B.e.a	ENSGT00940000155792	ENSGT00470000042284	ENSGT00940000160342.g.b	ENSGT00940000162599	ENSGT00940000166096	ENSGT00510000047481	ENSGT00390000003033	ENSGT00940000165242.c	ENSGT00390000012547.b #22	ENSGT01070000253816.a.a.b	ENSGT00940000153313.B	ENSGT00940000158106	ENSGT00390000006601	ENSGT00390000011709.gb	ENSGT00940000158556	ENSGT00950000182827.A	ENSGT00940000164470.a	ENSGT00940000155202	ENSGT00940000154517.mb	ENSGT00530000063528.B	ENSGT00940000166292	ENSGT00940000166446	ENSGT00990000203619.A.a	ENSGT01060000248589.C.g.a
Seriola	ANCESTRAL SPECIES	6	ENSGT00940000155367	ENSGT00390000005727.b	ENSGT00390000006350.h	ENSGT01050000244956.b	ENSGT00530000063609.a	ENSGT00940000158407	ENSGT00390000008096.B.e.a	ENSGT00940000155792	ENSGT00470000042284	ENSGT00940000160342.g.b	ENSGT00940000162599	ENSGT00940000166096	ENSGT00510000047481	ENSGT00390000003033	ENSGT00940000165242.c	ENSGT00390000012547.b #22	ENSGT01070000253816.a.a.b	ENSGT00940000153313.B	ENSGT00940000158361	ENSGT01100000263568.b.a.c.b.b	ENSGT01030000234640.a.b.a.a.a.a.a.b.a.a.b.f	ENSGT01030000234640.a.b.a.a.a.a.a.b.a.a.b.e	ENSGT01030000234640.a.b.a.a.a.a.b.a.a.a	ENSGT01030000234640.a.b.a.a.a.a.a.a.j.a.a	ENSGT01030000234640.a.b.a.a.a.a.a.a.j.a.b	ENSGT01030000234640.a.b.a.a.a.a.b.a.a.b	ENSGT01030000234640.a.b.a.a.a.a.b.a.b	ENSGT01030000234640.a.b.a.a.a.a.a.a.k	ENSGT01030000234640.a.b.a.a.a.a.a.b.b.j	ENSGT01030000234640.a.b.a.a.a.a.a.b.a.b.d	ENSGT01030000234640.a.b.a.a.a.a.a.b.a.a.a
Greater amberjack	MODERN SPECIES	21	coq10b (ENSSDUG00000017471)	hspd1 (ENSSDUG00000017487)	hspe1 (ENSSDUG00000017512)	mob4 (ENSSDUG00000017533)	rftn2 (ENSSDUG00000017560)	PLCL1 (ENSSDUG00000017579)	satb2 (ENSSDUG00000017615)	dnajb11 (ENSSDUG00000017646)	tbccd1 (ENSSDUG00000017677)	crygs1 (ENSSDUG00000017704)	lcmt2 (ENSSDUG00000017764)	rab5b (ENSSDUG00000017822)	dbr1 (ENSSDUG00000017849)	armc8 (ENSSDUG00000017908)	ENSSDUG00000017952	idh1 (ENSSDUG00000017961) #22	ENSSDUG00000017996	AKAP11 (ENSSDUG00000018051)	ENSSDUG00000018084	itgav (ENSSDUG00000018160)	ENSSDUG00000018302	ENSSDUG00000018315	ENSSDUG00000018342	ENSSDUG00000018376	ENSSDUG00000018381	ENSSDUG00000018417	ENSSDUG00000018438	ENSSDUG00000018468	ENSSDUG00000018511	ENSSDUG00000018542	ENSSDUG00000018556
Yellowtail amberjack	MODERN SPECIES	2895	hspe1 (ENSSLDG00000019614)	ENSSLDG00000019627	mob4 (ENSSLDG00000019644)	rftn2 (ENSSLDG00000019682)	PLCL1 (ENSSLDG00000019704)	satb2 (ENSSLDG00000019724)	dnajb11 (ENSSLDG00000019771)	tbccd1 (ENSSLDG00000019797)	CRYGS (ENSSLDG00000019817)	lcmt2 (ENSSLDG00000019839)	ENSSLDG00000019862	rab5b (ENSSLDG00000019873)	dbr1 (ENSSLDG00000019891)	armc8 (ENSSLDG00000019925)	ENSSLDG00000020000	idh1 (ENSSLDG00000020025) #22	ENSSLDG00000020053	AKAP11 (ENSSLDG00000020069)	itgav (ENSSLDG00000020113)	ENSSLDG00000020165	ENSSLDG00000020186	ENSSLDG00000020219	ENSSLDG00000020229	ENSSLDG00000020255	ENSSLDG00000020270	ENSSLDG00000020282	ENSSLDG00000020314	ENSSLDG00000020345	ENSSLDG00000020379	ENSSLDG00000020396	ENSSLDG00000020410
Barramundi perch	MODERN SPECIES	281		coq10b (ENSLCAG00010008330)	hspd1 (ENSLCAG00010008343)	hspe1 (ENSLCAG00010008372)	mob4 (ENSLCAG00010008394)	rftn2 (ENSLCAG00010008404)	satb2 (ENSLCAG00010008438)	dnajb11 (ENSLCAG00010008457)	tbccd1 (ENSLCAG00010008467)	CRYGS (ENSLCAG00010008468)	lcmt2 (ENSLCAG00010008471)	rab5b (ENSLCAG00010008481)	dbr1 (ENSLCAG00010008484)	armc8 (ENSLCAG00010008532)	ENSLCAG00010008774	idh1 (ENSLCAG00010008801) #22	ENSLCAG00010008861	ENSLCAG00010008872	DGKH (ENSLCAG00010008991)	vwa8 (ENSLCAG00010009674)
Anabantaria	ANCESTRAL SPECIES	26	ENSGT00940000155367	ENSGT00390000005727.b	ENSGT00390000006350	ENSGT01050000244956.b	ENSGT00530000063609.a	ENSGT00940000158407	ENSGT00390000008096.B.e.a	ENSGT00940000155792	ENSGT00470000042284	ENSGT00940000160342.g.b	ENSGT00940000162599	ENSGT00940000166096	ENSGT00510000047481	ENSGT00390000003033	ENSGT00940000165242.c	ENSGT00390000012547.b #22	ENSGT01070000253816.a.a.b	ENSGT00940000153313.B	ENSGT00940000158106	ENSGT00390000006601	ENSGT00390000011709.gb	ENSGT00940000158556	ENSGT00950000182827.A	ENSGT00940000164470.a	ENSGT00940000155202	ENSGT00940000154517.mb	ENSGT00530000063528.B	ENSGT00940000166292	ENSGT00940000166446	ENSGT00990000203619.A.a	ENSGT01060000248589.C.g.a
Zig-zag eel	MODERN SPECIES	13	hspd1 (ENSMAMG00000010371)	hspe1 (ENSMAMG00000010406)	mob4 (ENSMAMG00000010425)	rftn2 (ENSMAMG00000010459)	ENSMAMG00000010504	satb2 (ENSMAMG00000011861)	dnajb11 (ENSMAMG00000011906)	tbccd1 (ENSMAMG00000011948)	CRYGS (ENSMAMG00000011966)	lcmt2 (ENSMAMG00000012158)	rab5b (ENSMAMG00000028405)	dbr1 (ENSMAMG00000012205)	armc8 (ENSMAMG00000012239)	ENSMAMG00000025939	ENSMAMG00000012317	idh1 (ENSMAMG00000012331) #22	ENSMAMG00000028176	AKAP11 (ENSMAMG00000012363)	DGKH (ENSMAMG00000012402)	vwa8 (ENSMAMG00000012489)	rgcc (ENSMAMG00000012629)	f5 (ENSMAMG00000012640)	slc35a5 (ENSMAMG00000012659)	ccdc80 (ENSMAMG00000012690)	ENSMAMG00000012717	KDM6A (ENSMAMG00000012742)	fundc1 (ENSMAMG00000012838)	efhc2 (ENSMAMG00000012855)	ENSMAMG00000012883	mao (ENSMAMG00000026614)	ENSMAMG00000012963
Anabantoidei	ANCESTRAL SPECIES	13	ENSGT00940000156444.d	ENSGT00390000005159.i	ENSGT00940000156089.e.b	ENSGT00390000006356	ENSGT00950000183097.a.a.b	ENSGT00550000075118.l	ENSGT00940000160136.p	ENSGT00950000183115.b.a.m.a	ENSGT00390000012063	ENSGT00390000010170.a.b	ENSGT01050000244937.a.a	ENSGT00390000011864	ENSGT00940000159528	ENSGT00940000160585	ENSGT01050000244823.d.b.b.a.a.a.b.a.b.a	ENSGT00390000012547.b #22	ENSGT01070000253816.a.a.b	ENSGT00940000153313.B	ENSGT00940000158106	ENSGT00390000006601	ENSGT00390000011709.gb	ENSGT00940000158556	ENSGT00950000182827.A	ENSGT00940000164470.a	ENSGT00940000155202	ENSGT00940000154517.mb	ENSGT00530000063528.B	ENSGT00940000166292	ENSGT00940000166446	ENSGT00990000203619.A.a	ENSGT01060000248589.C.g.a
Siamese fighting fish	MODERN SPECIES	11	ABI2 (ENSBSLG00000014132)	cnot11 (ENSBSLG00000014286)	lcp1 (ENSBSLG00000014328)	alg11 (ENSBSLG00000014648)	itm2bb (ENSBSLG00000014695)	med4 (ENSBSLG00000014758)	sucla2 (ENSBSLG00000014782)	ENSBSLG00000015158	ENSBSLG00000015206	HTR2A (ENSBSLG00000015230)	esd (ENSBSLG00000015273)	ENSBSLG00000015404	RUBCNL (ENSBSLG00000016667)	ENSBSLG00000016864	ENSBSLG00000016890	idh1 (ENSBSLG00000016925) #22	ENSBSLG00000017121	AKAP11 (ENSBSLG00000017135)	DGKH (ENSBSLG00000017216)	vwa8 (ENSBSLG00000017995)	rgcc (ENSBSLG00000019007)	f5 (ENSBSLG00000019040)	slc35a5 (ENSBSLG00000019119)	ccdc80 (ENSBSLG00000016836)	ENSBSLG00000016966	KDM6A (ENSBSLG00000017055)	fundc1 (ENSBSLG00000018369)	efhc2 (ENSBSLG00000018387)	ENSBSLG00000018465	mao (ENSBSLG00000018478)	ENSBSLG00000019075
Climbing perch	MODERN SPECIES	12	ENSATEG00000014714	ENSATEG00000014726	ENSATEG00000014802	ENSATEG00000014759	ITM2B (ENSATEG00000014812)	med4 (ENSATEG00000014823)	SUCLA2 (ENSATEG00000014852)	ENSATEG00000014893	esd (ENSATEG00000014923)	ENSATEG00000014972	RUBCNL (ENSATEG00000015021)	ENSATEG00000015058	ENSATEG00000015072	ENSATEG00000015143	ENSATEG00000015155	ENSATEG00000015169 #22	ENSATEG00000029378	ENSATEG00000028330	AKAP11 (ENSATEG00000015217)	DGKH (ENSATEG00000015272)	vwa8 (ENSATEG00000015448)	rgcc (ENSATEG00000015656)	f5 (ENSATEG00000015701)	ENSATEG00000028955	ccdc80 (ENSATEG00000015991)	slc35a5 (ENSATEG00000028318)	ccdc80 (ENSATEG00000025900)	KDM6A (ENSATEG00000016273)	fundc1 (ENSATEG00000016392)	efhc2 (ENSATEG00000016421)	ENSATEG00000028137
Eupercaria	ANCESTRAL SPECIES	18	ENSGT00940000155367	ENSGT00390000005727.b	ENSGT00390000006350	ENSGT01050000244956.b	ENSGT00530000063609.a	ENSGT00940000158407	ENSGT00390000008096.B.e.a	ENSGT00940000155792	ENSGT00470000042284	ENSGT00940000160342.g.b	ENSGT00940000162599	ENSGT00940000166096	ENSGT00510000047481	ENSGT00390000003033	ENSGT00940000165242.c	ENSGT00390000012547.b #22	ENSGT00390000013820	ENSGT01070000253816.a.a.b	ENSGT00940000153313.B	ENSGT00940000158106	ENSGT00390000006601	ENSGT00390000011709.gb	ENSGT00940000158556	ENSGT00950000182827.A	ENSGT00940000164470.a	ENSGT00940000155202	ENSGT00940000154517.mb	ENSGT00530000063528.B	ENSGT00940000166292	ENSGT00940000166446	ENSGT00990000203619.A.a
Tetraodontidae	ANCESTRAL SPECIES		ENSGT00940000163322.a.a.a	ENSGT00940000163148.a.b.b.a.a.b	ENSGT00940000163148.a.a.b	ENSGT00940000163148.a.b.b.a.b.a.c.a.b.e.a.b	ENSGT00940000163148.a.b.b.a.b.a.c.a.b.f	ENSGT00940000163148.a.b.b.a.b.a.c.a.b.e.a.a	ENSGT00940000163148.a.b.b.a.b.b.b.a	ENSGT00940000163148.a.b.b.a.a.a	ENSGT00940000163322.a.b.a.b	ENSGT00940000163322.b	ENSGT00390000013151.a.a.b	ENSGT00940000157043	ENSGT00940000158091.h	ENSGT00950000183170.b.b	ENSGT00940000156322	ENSGT00390000012547.b #22	ENSGT01070000253816.a.a.b	ENSGT00940000153313.B	ENSGT00390000006601	ENSGT00940000158556	ENSGT00950000182827.A	ENSGT00940000164470.a	ENSGT00940000156472.d	ENSGT00940000165507	ENSGT00940000155558	ENSGT00390000005923	ENSGT00940000154443.f	ENSGT00940000160782	ENSGT00940000166446	ENSGT00940000166292	ENSGT00940000154517.mb
Tetraodon	MODERN SPECIES	13	ENSTNIG00000011544	crygm3 (ENSTNIG00000011545)	ENSTNIG00000011546	ENSTNIG00000011547	ENSTNIG00000011548	ENSTNIG00000011549	ENSTNIG00000011550	ENSTNIG00000011551	zgc:153846 (ENSTNIG00000011552)	si:dkey-57a22.15 (ENSTNIG00000011553)	ENSTNIG00000011554	sh3bp4 (ENSTNIG00000011555)	usp37 (ENSTNIG00000011556)	ybey (ENSTNIG00000001620)	ENSTNIG00000011557	idh1 (ENSTNIG00000011558) #22	ENSTNIG00000011559	ENSTNIG00000011560	vwa8 (ENSTNIG00000011561)	f5 (ENSTNIG00000011562)	slc35a5 (ENSTNIG00000011563)	ccdc80 (ENSTNIG00000011564)	dusp19a (ENSTNIG00000011565)	frzb (ENSTNIG00000011566)	ENSTNIG00000011567	ENSTNIG00000001467	nup35 (ENSTNIG00000011568)	ddx3xa (ENSTNIG00000011569)	nyx (ENSTNIG00000011570)	mao (ENSTNIG00000011571)	ENSTNIG00000011572
Fugu	MODERN SPECIES		ENSTRUG00000016089	ENSTRUG00000022219	ENSTRUG00000023922	ENSTRUG00000030660	zgc:153846 (ENSTRUG00000000230)	si:dkey-57a22.15 (ENSTRUG00000027681)	ENSTRUG00000032703	sh3bp4 (ENSTRUG00000000489)	ENSTRUG00000031348	arl4cb (ENSTRUG00000003085)	ENSTRUG00000027764	ENSTRUG00000004307	usp37 (ENSTRUG00000004918)	ybey (ENSTRUG00000030235)	ENSTRUG00000005210	idh1 (ENSTRUG00000005863) #22	ENSTRUG00000021409	ENSTRUG00000021217	vwa8 (ENSTRUG00000006143)	f5 (ENSTRUG00000014416)	slc35a5 (ENSTRUG00000014370)	ccdc80 (ENSTRUG00000014296)	dusp19a (ENSTRUG00000014275)	frzb (ENSTRUG00000014200)	dnajc10 (ENSTRUG00000014113)	nup35 (ENSTRUG00000014111)	ddx3xa (ENSTRUG00000014001)	nyx (ENSTRUG00000013984)	ENSTRUG00000031114	mao (ENSTRUG00000013814)	ENSTRUG00000013800
Eupecaria_A	ANCESTRAL SPECIES	18	ENSGT00940000155367	ENSGT00390000005727.b	ENSGT00390000006350	ENSGT01050000244956.b	ENSGT00530000063609.a	ENSGT00940000158407	ENSGT00390000008096.B.e.a	ENSGT00940000155792	ENSGT00470000042284	ENSGT00940000160342.g.b	ENSGT00940000162599	ENSGT00940000166096	ENSGT00510000047481	ENSGT00390000003033	ENSGT00940000165242.c	ENSGT00390000012547.b #22	ENSGT00390000013820	ENSGT01070000253816.a.a.b	ENSGT00940000153313.B	ENSGT00940000158106	ENSGT00390000006601	ENSGT00390000011709.gb	ENSGT00940000158556	ENSGT00950000182827.A	ENSGT00940000164470.a	ENSGT00940000155202	ENSGT00940000154517.mb	ENSGT00530000063528.B	ENSGT00940000166292	ENSGT00940000166446	ENSGT00990000203619.A.a
Ballan wrasse	DUPLICATION
Ballan wrasse	MODERN SPECIES	106	coq10b (ENSLBEG00000022162)	hspd1 (ENSLBEG00000022123)	hspe1 (ENSLBEG00000022097)	mob4 (ENSLBEG00000022069)	rftn2 (ENSLBEG00000021987)	PLCL1 (ENSLBEG00000021870)	satb2 (ENSLBEG00000021744)	dnajb11 (ENSLBEG00000021545)	tbccd1 (ENSLBEG00000021471)	crygs1 (ENSLBEG00000021397)	lcmt2 (ENSLBEG00000021353)	rab5b (ENSLBEG00000021323)	dbr1 (ENSLBEG00000021307)	armc8 (ENSLBEG00000021259)	ENSLBEG00000021227	idh1 (ENSLBEG00000021190) #22	TNFSF11 (ENSLBEG00000021162)	AKAP11 (ENSLBEG00000021114)	DGKH (ENSLBEG00000020942)	ENSLBEG00000020850	vwa8 (ENSLBEG00000020789)
Ballan wrasse	MODERN SPECIES	3874																idh1 (ENSLBEG00000019003) #22	ENSLBEG00000019027
Eupecaria_B	ANCESTRAL SPECIES	18	ENSGT00940000155367	ENSGT00390000005727.b	ENSGT00390000006350	ENSGT01050000244956.b	ENSGT00530000063609.a	ENSGT00940000158407	ENSGT00390000008096.B.e.a	ENSGT00940000155792	ENSGT00470000042284	ENSGT00940000160342.g.b	ENSGT00940000162599	ENSGT00940000166096	ENSGT00510000047481	ENSGT00390000003033	ENSGT00940000165242.c	ENSGT00390000012547.b #22	ENSGT00390000013820	ENSGT01070000253816.a.a.b	ENSGT00940000153313.B	ENSGT00940000158106	ENSGT00390000006601	ENSGT00390000011709.gb	ENSGT00940000158556	ENSGT00950000182827.A	ENSGT00940000164470.a	ENSGT00940000155202	ENSGT00940000154517.mb	ENSGT00530000063528.B	ENSGT00940000166292	ENSGT00940000166446	ENSGT00990000203619.A.a
Eupecaria_C	ANCESTRAL SPECIES	33	ENSGT00940000155367	ENSGT00390000005727.b	ENSGT00390000006350	ENSGT01050000244956.b	ENSGT00530000063609.a	ENSGT00940000158407	ENSGT00390000008096.B.e.a	ENSGT00940000155792	ENSGT00470000042284	ENSGT00940000160342.g.b	ENSGT00940000162599	ENSGT00940000166096	ENSGT00510000047481	ENSGT00390000003033	ENSGT00940000165242.c	ENSGT00390000012547.b #22	ENSGT00390000013820	ENSGT01070000253816.a.a.b	ENSGT00940000153313.B	ENSGT00940000158106	ENSGT00390000006601	ENSGT00390000011709.gb	ENSGT00940000158556	ENSGT00950000182827.A	ENSGT00940000164470.a	ENSGT00940000155202	ENSGT00940000154517.mb	ENSGT00530000063528.B	ENSGT00940000166292	ENSGT00940000166446	ENSGT00990000203619.A.a
Eupercaria_incertae_sedis	ANCESTRAL SPECIES	37	ENSGT00940000155367	ENSGT00390000005727.b	ENSGT00390000006350	ENSGT01050000244956.b	ENSGT00530000063609.a	ENSGT00940000158407	ENSGT00390000008096.B.e.a	ENSGT00940000155792	ENSGT00470000042284	ENSGT00940000160342.g.b	ENSGT00940000162599	ENSGT00940000166096	ENSGT00510000047481	ENSGT00390000003033	ENSGT00940000165242.c	ENSGT00390000012547.b #22	ENSGT01070000253816.a.a.b	ENSGT00940000153313.B	ENSGT00940000158106	ENSGT00390000006601	ENSGT00390000011709.gb	ENSGT00940000158556	ENSGT00950000182827.A	ENSGT00940000164470.a	ENSGT00940000155202	ENSGT00940000154517.mb	ENSGT00530000063528.B	ENSGT00940000166292	ENSGT00940000166446	ENSGT00990000203619.A.a	ENSGT01060000248589.C.g.a
Large yellow croaker	MODERN SPECIES	490	ckap5 (ENSLCRG00005004119)	ENSLCRG00005004131	ENSLCRG00005004136	ENSLCRG00005004139	rftn2 (ENSLCRG00005004140)	PLCL1 (ENSLCRG00005004145)	satb2 (ENSLCRG00005004151)	dnajb11 (ENSLCRG00005004153)	tbccd1 (ENSLCRG00005004168)	crygs1 (ENSLCRG00005004171)	lcmt2 (ENSLCRG00005004178)	rab5b (ENSLCRG00005004186)	dbr1 (ENSLCRG00005004190)	armc8 (ENSLCRG00005004198)	ENSLCRG00005004736	idh1 (ENSLCRG00005004740) #22	ENSLCRG00005004835	ENSLCRG00005004840	naa15a (ENSLCRG00005004868)	mlsl (ENSLCRG00005005688)	hars (ENSLCRG00005005707)	ENSLCRG00005005761	ENSLCRG00005005762	gfra3 (ENSLCRG00005005763)	zgc:153146 (ENSLCRG00005005765)	hvcn1 (ENSLCRG00005005767)	ENSLCRG00005005769	ENSLCRG00005005774	nkx1.2lb (ENSLCRG00005005775)	uvssa (ENSLCRG00005005780)	lrrc40 (ENSLCRG00005005789)
European seabass	MODERN SPECIES	5	coq10b (ENSDLAG00005032413)	hspd1 (ENSDLAG00005031667)	mob4 (ENSDLAG00005026814)	rftn2 (ENSDLAG00005026118)	ENSDLAG00005026115	satb2 (ENSDLAG00005026110)	dnajb11 (ENSDLAG00005026104)	tbccd1 (ENSDLAG00005026101)	CRYGS (ENSDLAG00005026100)	lcmt2 (ENSDLAG00005026093)	rab5b (ENSDLAG00005026090)	dbr1 (ENSDLAG00005026087)	armc8 (ENSDLAG00005026081)	ENSDLAG00005026069	ENSDLAG00005026066	idh1 (ENSDLAG00005026063) #22	ENSDLAG00005026059	EPSTI1 (ENSDLAG00005033430)	AKAP11 (ENSDLAG00005026058)	ENSDLAG00005029378	ENSDLAG00005030852	DGKH (ENSDLAG00005026025)	vwa8 (ENSDLAG00005025899)	rgcc (ENSDLAG00005027305)	f5 (ENSDLAG00005025738)	slc35a5 (ENSDLAG00005025728)	ccdc80 (ENSDLAG00005025725)	KDM6A (ENSDLAG00005022093)	fundc1 (ENSDLAG00005031491)	efhc2 (ENSDLAG00005021849)	ENSDLAG00005029228
Gilthead seabream	MODERN SPECIES	23	coq10b (ENSSAUG00010024956)	hspd1 (ENSSAUG00010024953)	HSP10 (ENSSAUG00010024941)	mob4 (ENSSAUG00010024939)	rftn2 (ENSSAUG00010024938)	PLCL1 (ENSSAUG00010024936)	satb2 (ENSSAUG00010024934)	dnajb11 (ENSSAUG00010024928)	tbccd1 (ENSSAUG00010024920)	CRYGS (ENSSAUG00010024919)	lcmt2 (ENSSAUG00010024917)	rab5b (ENSSAUG00010024915)	dbr1 (ENSSAUG00010024912)	armc8 (ENSSAUG00010024769)	ENSSAUG00010024755	idh1 (ENSSAUG00010024665) #22	ENSSAUG00010024649	ENSSAUG00010024648	AKAP11 (ENSSAUG00010024645)	DGKH (ENSSAUG00010024376)	ENSSAUG00010024355	vwa8 (ENSSAUG00010023822)	rgcc (ENSSAUG00010023801)	f5 (ENSSAUG00010022483)	slc35a5 (ENSSAUG00010022479)	ENSSAUG00010022478	ccdc80 (ENSSAUG00010022425)	KDM6A (ENSSAUG00010002756)	fundc1 (ENSSAUG00010002378)	efhc2 (ENSSAUG00010002242)	ENSSAUG00010002229
Perciformes	ANCESTRAL SPECIES	20	ENSGT00940000155367	ENSGT00390000005727.b	ENSGT00390000006350	ENSGT01050000244956.b	ENSGT00530000063609.a	ENSGT00940000158407	ENSGT00390000008096.B.e.a	ENSGT00940000155792	ENSGT00470000042284	ENSGT00940000160342.g.b	ENSGT00940000162599	ENSGT00940000166096	ENSGT00510000047481	ENSGT00390000003033	ENSGT00940000165242.c	ENSGT00390000012547.b #22	ENSGT00390000013820	ENSGT01070000253816.a.a.b	ENSGT00940000153313.B	ENSGT00940000158106	ENSGT00390000006601	ENSGT00390000011709.gb	ENSGT00940000158556	ENSGT00950000182827.A	ENSGT00940000164470.a	ENSGT00940000155202	ENSGT00940000154517.mb	ENSGT00530000063528.B	ENSGT00940000166292	ENSGT00940000166446	ENSGT00990000203619.A.a
Cottioidei	ANCESTRAL SPECIES	14	ENSGT00940000155367	ENSGT00390000005727.b	ENSGT00390000006350	ENSGT01050000244956.b	ENSGT00530000063609.a	ENSGT00940000158407	ENSGT00390000008096.B.e.a	ENSGT00940000155792	ENSGT00470000042284	ENSGT00940000160342.g.b	ENSGT00940000162599	ENSGT00940000166096	ENSGT00510000047481	ENSGT00390000003033	ENSGT00940000165242.c	ENSGT00390000012547.b #22	ENSGT00390000013820	ENSGT01070000253816.a.a.b	ENSGT00940000153313.B	ENSGT00940000158106	ENSGT00390000006601	ENSGT00390000011709.gb	ENSGT00940000158556	ENSGT00950000182827.A	ENSGT00940000164470.a	ENSGT00940000155202	ENSGT00940000154517.mb	ENSGT00530000063528.B	ENSGT00940000166292	ENSGT00940000166446	ENSGT00990000203619.A.a
Lumpfish	MODERN SPECIES	13	pcbp3 (ENSCLMG00005017799)	lrrc3 (ENSCLMG00005017797)	ENSCLMG00005017795	mob4 (ENSCLMG00005017793)	rftn2 (ENSCLMG00005017792)	PLCL1 (ENSCLMG00005017723)	satb2 (ENSCLMG00005017720)	dnajb11 (ENSCLMG00005017718)	tbccd1 (ENSCLMG00005017709)	crygs1 (ENSCLMG00005017704)	lcmt2 (ENSCLMG00005017702)	rab5b (ENSCLMG00005017699)	dbr1 (ENSCLMG00005017695)	armc8 (ENSCLMG00005016928)	ENSCLMG00005016801	idh1 (ENSCLMG00005016742) #22	ENSCLMG00005016741	TNFSF11 (ENSCLMG00005016740)	AKAP11 (ENSCLMG00005016737)	ENSCLMG00005016727	DGKH (ENSCLMG00005016721)	ENSCLMG00005016713	vwa8 (ENSCLMG00005016324)	rgcc (ENSCLMG00005016307)	f5 (ENSCLMG00005016305)	slc35a5 (ENSCLMG00005016303)	ccdc80 (ENSCLMG00005016301)	KDM6A (ENSCLMG00005008935)	fundc1 (ENSCLMG00005008906)	efhc2 (ENSCLMG00005008905)	ENSCLMG00005008904
Stickleback	MODERN SPECIES	16	hspd1 (ENSGACG00000008860)	hspe1 (ENSGACG00000008995)	mob4 (ENSGACG00000009010)	rftn2 (ENSGACG00000009017)	PLCL1 (ENSGACG00000009026)	satb2 (ENSGACG00000009037)	dnajb11 (ENSGACG00000009047)	tbccd1 (ENSGACG00000009074)	crygs1 (ENSGACG00000009079)	lcmt2 (ENSGACG00000009092)	rab5b (ENSGACG00000009102)	dbr1 (ENSGACG00000009122)	armc8 (ENSGACG00000009132)	ENSGACG00000009156	ENSGACG00000009159	idh1 (ENSGACG00000009167) #22	ENSGACG00000009174	ENSGACG00000009181	AKAP11 (ENSGACG00000009186)	DGKH (ENSGACG00000009197)	vwa8 (ENSGACG00000009203)	rgcc (ENSGACG00000009239)	f5 (ENSGACG00000009246)	slc35a5 (ENSGACG00000009271)	ccdc80 (ENSGACG00000009289)	KDM6A (ENSGACG00000009303)	fundc1 (ENSGACG00000009326)	efhc2 (ENSGACG00000009339)	mao (ENSGACG00000009353)
Perciformes_a	ANCESTRAL SPECIES	21	ENSGT00940000155367	ENSGT00390000005727.b	ENSGT00390000006350	ENSGT01050000244956.b	ENSGT00530000063609.a	ENSGT00940000158407	ENSGT00390000008096.B.e.a	ENSGT00940000155792	ENSGT00470000042284	ENSGT00940000160342.g.b	ENSGT00940000162599	ENSGT00940000166096	ENSGT00510000047481	ENSGT00390000003033	ENSGT00940000165242.c	ENSGT00390000012547.b #22	ENSGT01070000253816.a.a.b	ENSGT00940000153313.B	ENSGT00940000158106	ENSGT00390000006601	ENSGT00390000011709.gb	ENSGT00940000158556	ENSGT00950000182827.A	ENSGT00940000164470.a	ENSGT00940000155202	ENSGT00940000154517.mb	ENSGT00530000063528.B	ENSGT00940000166292	ENSGT00940000166446	ENSGT00990000203619.A.a	ENSGT01060000248589.C.g.a
Pike perch	MODERN SPECIES	1	hspd1 (ENSSLUG00000017583)	hspe1 (ENSSLUG00000017575)	mob4 (ENSSLUG00000017565)	rftn2 (ENSSLUG00000017554)	PLCL1 (ENSSLUG00000017499)	satb2 (ENSSLUG00000017469)	dnajb11 (ENSSLUG00000017381)	tbccd1 (ENSSLUG00000017361)	CRYGS (ENSSLUG00000017359)	lcmt2 (ENSSLUG00000017329)	rab5b (ENSSLUG00000017321)	dbr1 (ENSSLUG00000017311)	armc8 (ENSSLUG00000015447)	ENSSLUG00000015275	ENSSLUG00000015268	idh1 (ENSSLUG00000014916) #22	ENSSLUG00000014892	AKAP11 (ENSSLUG00000014887)	DGKH (ENSSLUG00000014489)	vwa8 (ENSSLUG00000011975)	rgcc (ENSSLUG00000011843)	f5 (ENSSLUG00000010687)	slc35a5 (ENSSLUG00000010620)	ccdc80 (ENSSLUG00000010606)	KDM6A (ENSSLUG00000001195)	fundc1 (ENSSLUG00000000790)	efhc2 (ENSSLUG00000000782)	ENSSLUG00000000777	mao (ENSSLUG00000000706)	GPR82 (ENSSLUG00000000673)	gpr34b (ENSSLUG00000000653)
Channel bull blenny	MODERN SPECIES	13	SF3B1 (ENSCGOG00000003380)	hspd1 (ENSCGOG00000003123)	coq10b (ENSCGOG00000003077)	mob4 (ENSCGOG00000003005)	rftn2 (ENSCGOG00000002980)	ENSCGOG00000002975	satb2 (ENSCGOG00000002962)	dnajb11 (ENSCGOG00000002904)	tbccd1 (ENSCGOG00000002892)	crygs1 (ENSCGOG00000002665)	lcmt2 (ENSCGOG00000002606)	rab5b (ENSCGOG00000002590)	dbr1 (ENSCGOG00000024707)	armc8 (ENSCGOG00000024702)	ENSCGOG00000024697	idh1 (ENSCGOG00000024696) #22	TNFSF11 (ENSCGOG00000024695)	AKAP11 (ENSCGOG00000024694)	DGKH (ENSCGOG00000024688)	vwa8 (ENSCGOG00000024644)	rgcc (ENSCGOG00000024602)	f5 (ENSCGOG00000024588)	slc35a5 (ENSCGOG00000024580)	ccdc80 (ENSCGOG00000024578)	ENSCGOG00000024576	KDM6A (ENSCGOG00000024509)	ENSCGOG00000024467	fundc1 (ENSCGOG00000024466)	efhc2 (ENSCGOG00000024465)	ENSCGOG00000024462	mao (ENSCGOG00000024375)
Ovalentaria	ANCESTRAL SPECIES	14	ENSGT00390000005727.b	ENSGT00390000006350	ENSGT01050000244956.b	ENSGT00530000063609.a	ENSGT00940000177416	ENSGT00940000158407	ENSGT00390000008096.B.e.a	ENSGT00940000155792	ENSGT00470000042284	ENSGT00940000160342.g.b	ENSGT00940000162599	ENSGT00940000166096	ENSGT00510000047481	ENSGT00390000003033	ENSGT00940000165242.c	ENSGT00390000012547.b #22	ENSGT00390000013820	ENSGT01070000253816.a.a.b	ENSGT00940000153313.B	ENSGT00940000158106	ENSGT00390000006601	ENSGT00390000011709.gb	ENSGT00940000158556	ENSGT00950000182827.A	ENSGT00940000164470.a	ENSGT00940000155202	ENSGT00940000154517.mb	ENSGT00530000063528.B	ENSGT00940000166292	ENSGT00940000166446	ENSGT00990000203619.A.a
Atherinomorphae	ANCESTRAL SPECIES	13	ENSGT00390000005727.b	ENSGT00390000006350	ENSGT01050000244956.b	ENSGT00530000063609.a	ENSGT00940000177416	ENSGT00940000158407	ENSGT00390000008096.B.e.a	ENSGT00940000155792	ENSGT00470000042284	ENSGT00940000160342.g.b	ENSGT00940000162599	ENSGT00940000166096	ENSGT00510000047481	ENSGT00390000003033	ENSGT00940000165242.c	ENSGT00390000012547.b #22	ENSGT00390000013820	ENSGT01070000253816.a.a.b	ENSGT00940000153313.B	ENSGT00940000158106	ENSGT00390000006601	ENSGT00390000011709.gb	ENSGT00940000158556	ENSGT00950000182827.A	ENSGT00940000164470.a	ENSGT00940000155202	ENSGT00940000154517.mb	ENSGT00530000063528.B	ENSGT00940000166292	ENSGT00940000166446	ENSGT00940000155600.a.b
Cyprinodontiformes	ANCESTRAL SPECIES	30	ENSGT00390000008096.B.e.a	ENSGT00940000158407	ENSGT00940000177416	ENSGT00530000063609.a	ENSGT01050000244956.b	ENSGT00390000006350	ENSGT00390000005727.b	ENSGT00940000155367	ENSGT00390000018393	ENSGT00950000182908.D	ENSGT00940000162599	ENSGT00940000166096	ENSGT00510000047481	ENSGT00390000003033	ENSGT00940000165242.c	ENSGT00390000012547.b #22	ENSGT00390000013820	ENSGT01070000253816.a.a.b	ENSGT00940000153313.B	ENSGT00940000158106	ENSGT00390000006601	ENSGT00390000011709.gb	ENSGT00940000158556	ENSGT00950000182827.A	ENSGT00940000164470.a	ENSGT00940000155202	ENSGT00940000154517.mb	ENSGT00530000063528.B	ENSGT00940000166292	ENSGT00940000166446	ENSGT00940000155600.a.b
Aplocheiloidei	ANCESTRAL SPECIES	244																ENSGT00390000012547.b #22	ENSGT01070000253816.a.a.b	ENSGT00940000153313.B	ENSGT00940000158106	ENSGT00390000006601	ENSGT00390000011709.gb	ENSGT00940000158556	ENSGT00950000182827.A	ENSGT00940000164470.a
Mangrove rivulus	MODERN SPECIES	161		ENSKMAG00000004320	ENSKMAG00000004359	ENSKMAG00000004370	ENSKMAG00000004391	ENSKMAG00000004414	ENSKMAG00000004459	ENSKMAG00000004511	ENSKMAG00000004562	ENSKMAG00000004583	ENSKMAG00000004626	ENSKMAG00000004675	armc8 (ENSKMAG00000004743)	ENSKMAG00000004850	dbr1 (ENSKMAG00000004869)	idh1 (ENSKMAG00000004893) #22	ENSKMAG00000004931	AKAP11 (ENSKMAG00000004949)	DGKH (ENSKMAG00000004995)	ENSKMAG00000005165	vwa8 (ENSKMAG00000005204)	rgcc (ENSKMAG00000005314)	f5 (ENSKMAG00000005353)	slc35a5 (ENSKMAG00000005385)	ccdc80 (ENSKMAG00000005417)	ENSKMAG00000005433
Turquoise killifish	MODERN SPECIES	1623	COQ10B (ENSNFUG00015004906)	HSPD1 (ENSNFUG00015004867)	hspe1 (ENSNFUG00015004832)	MOB4 (ENSNFUG00015004812)	rftn2 (ENSNFUG00015004796)	ENSNFUG00015004775	satb2 (ENSNFUG00015022276)	DNAJB11 (ENSNFUG00015022262)	TBCCD1 (ENSNFUG00015022248)	crygs1 (ENSNFUG00015022246)	TNFAIP6 (ENSNFUG00015022242)	ITGB5 (ENSNFUG00015020515)	ETV5A (ENSNFUG00015020396)	ENSNFUG00015020391	DGKG (ENSNFUG00015016687)	idh1 (ENSNFUG00015016215) #22	ENSNFUG00015016196	insig2 (ENSNFUG00015016192)	si:dkey-251i10.3 (ENSNFUG00015016189)	CCDC93 (ENSNFUG00015016164)	ENSNFUG00015016043	pknox1.1 (ENSNFUG00015016032)	ENSNFUG00015016025	ENSNFUG00015015997	ENSNFUG00015015983	si:dkey-57a22.15 (ENSNFUG00015015975)	ENSNFUG00015015968	KALRN (ENSNFUG00015011459)	ahr2 (ENSNFUG00015011148)	ENSNFUG00015011134	ndufa10 (ENSNFUG00015011066)
Cyprinodontoidei	ANCESTRAL SPECIES	35	ENSGT00390000008096.B.e.a	ENSGT00940000158407	ENSGT00940000177416	ENSGT00530000063609.a	ENSGT01050000244956.b	ENSGT00390000006350	ENSGT00390000005727.b	ENSGT00940000155367	ENSGT00390000018393	ENSGT00950000182908.D	ENSGT00940000162599	ENSGT00940000166096	ENSGT00510000047481	ENSGT00390000003033	ENSGT00940000165242.c	ENSGT00390000012547.b #22	ENSGT00390000013820	ENSGT01070000253816.a.a.b	ENSGT00940000153313.B	ENSGT00940000158106	ENSGT00390000006601	ENSGT00390000011709.gb	ENSGT00940000158556	ENSGT00950000182827.A	ENSGT00940000164470.a	ENSGT00940000155202	ENSGT00940000154517.mb	ENSGT00530000063528.B	ENSGT00940000166292	ENSGT00940000166446	ENSGT00940000155600.a.b
Poeciliinae	ANCESTRAL SPECIES		ENSGT00940000155792	ENSGT00390000008096.B.e.a	ENSGT00940000158407	ENSGT00530000063609.a	ENSGT01050000244956.b	ENSGT00390000006350	ENSGT00390000005727.b	ENSGT00940000155367	ENSGT00390000018393	ENSGT00950000182908.D	ENSGT00940000162599	ENSGT00940000166096	ENSGT00510000047481	ENSGT00390000003033	ENSGT00940000165242.c	ENSGT00390000012547.b #22	ENSGT00390000013820	ENSGT01070000253816.a.a.b	ENSGT00940000153313.B	ENSGT00940000158106	ENSGT00390000006601	ENSGT00390000011709.gb	ENSGT00940000158556	ENSGT00950000182827.A	ENSGT00940000164470.a	ENSGT00940000155202	ENSGT00940000154517.mb	ENSGT00530000063528.B	ENSGT00940000166292	ENSGT00940000166446	ENSGT00940000155600.a.b
Poecilia	ANCESTRAL SPECIES	27	ENSGT00940000155792	ENSGT00390000008096.B.e.a	ENSGT00940000158407	ENSGT00530000063609.a	ENSGT01050000244956.b	ENSGT00390000006350	ENSGT00390000005727.b	ENSGT00940000155367	ENSGT00390000018393	ENSGT00950000182908.D	ENSGT00940000162599	ENSGT00940000166096	ENSGT00510000047481	ENSGT00390000003033	ENSGT00940000165242.c	ENSGT00390000012547.b #22	ENSGT00390000013820	ENSGT01070000253816.a.a.b	ENSGT00940000153313.B	ENSGT00940000158106.r.a	ENSGT00390000006601	ENSGT00390000011709.gb	ENSGT00940000158556	ENSGT00950000182827.A	ENSGT00940000164470.a	ENSGT00940000155202	ENSGT00940000154517.mb	ENSGT00530000063528.B	ENSGT00940000166292	ENSGT00940000166446	ENSGT00940000155600.a.b
NAME_6	ANCESTRAL SPECIES	471																ENSGT00390000012547.b #22	ENSGT00390000013820	ENSGT01070000253816.a.a.b	ENSGT00940000153313.B	ENSGT00940000158106.r.a
Amazon molly	MODERN SPECIES	737														ENSPFOG00000022638	vwa8 (ENSPFOG00000002911)	idh1 (ENSPFOG00000002594) #22	ENSPFOG00000023478	ENSPFOG00000002571	AKAP11 (ENSPFOG00000002476)	DGKH (ENSPFOG00000001800)
Sailfin molly	MODERN SPECIES	881																idh1 (ENSPLAG00000023100) #22	ENSPLAG00000023115	ENSPLAG00000023135	AKAP11 (ENSPLAG00000023146)	DGKH (ENSPLAG00000023211)
Guppy	MODERN SPECIES	450	satb2 (ENSPREG00000019334)	ENSPREG00000019403	ENSPREG00000019497	ENSPREG00000019507	rftn2 (ENSPREG00000019526)	mob4 (ENSPREG00000019579)	hspe1 (ENSPREG00000019607)	hspd1 (ENSPREG00000019620)	SF3B1 (ENSPREG00000019652)	ANKRD44 (ENSPREG00000019808)	lcmt2 (ENSPREG00000020123)	rab5b (ENSPREG00000020141)	dbr1 (ENSPREG00000020157)	armc8 (ENSPREG00000020189)	ENSPREG00000020257	idh1 (ENSPREG00000020304) #22	ENSPREG00000020325	AKAP11 (ENSPREG00000020336)	DGKH (ENSPREG00000020352)	vwa8 (ENSPREG00000020438)	rgcc (ENSPREG00000020557)	f5 (ENSPREG00000020574)	slc35a5 (ENSPREG00000020604)	ccdc80 (ENSPREG00000020628)	KDM6A (ENSPREG00000020669)	fundc1 (ENSPREG00000020691)	efhc2 (ENSPREG00000020717)	ENSPREG00000020735	mao (ENSPREG00000020746)	CASK (ENSPREG00000020791)	GPR82 (ENSPREG00000020823)
Platyfish	MODERN SPECIES	21	satb2 (ENSXMAG00000007412)	PLCL1 (ENSXMAG00000007406)	ENSXMAG00000028420	rftn2 (ENSXMAG00000007403)	mob4 (ENSXMAG00000007395)	hspe1 (ENSXMAG00000005889)	hspd1 (ENSXMAG00000005891)	coq10b (ENSXMAG00000028301)	SF3B1 (ENSXMAG00000007369)	ANKRD44 (ENSXMAG00000007341)	lcmt2 (ENSXMAG00000007328)	rab5b (ENSXMAG00000022199)	dbr1 (ENSXMAG00000007311)	armc8 (ENSXMAG00000007274)	ENSXMAG00000007272	idh1 (ENSXMAG00000007256) #22	EPSTI1 (ENSXMAG00000029717)	ENSXMAG00000000329	AKAP11 (ENSXMAG00000027331)	DGKH (ENSXMAG00000007213)	vwa8 (ENSXMAG00000007176)	rgcc (ENSXMAG00000007172)	f5 (ENSXMAG00000007139)	slc35a5 (ENSXMAG00000007127)	ccdc80 (ENSXMAG00000007110)	KDM6A (ENSXMAG00000007003)	fundc1 (ENSXMAG00000006986)	efhc2 (ENSXMAG00000006963)	ENSXMAG00000024891	mao (ENSXMAG00000006915)	CASK (ENSXMAG00000029578)
NAME_4	ANCESTRAL SPECIES	163	ENSGT00390000008096.B.e.a	ENSGT00940000158407	ENSGT00940000177416	ENSGT00530000063609.a	ENSGT01050000244956.b	ENSGT00390000006350	ENSGT00390000005727.b	ENSGT00940000155367	ENSGT00390000018393	ENSGT00950000182908.D	ENSGT00940000162599	ENSGT00940000166096	ENSGT00510000047481	ENSGT00390000003033	ENSGT00940000165242.c	ENSGT00390000012547.b #22	ENSGT01070000253816.a.a.b	ENSGT00940000153313.B	ENSGT00940000158106	ENSGT00390000006601	ENSGT00390000011709.gb	ENSGT00940000158556	ENSGT00950000182827.A	ENSGT00940000164470.a	ENSGT00940000155202	ENSGT00940000154517.mb
Mummichog	MODERN SPECIES	2364										ENSFHEG00000001725	lcmt2 (ENSFHEG00000001732)	rab5b (ENSFHEG00000001739)	dbr1 (ENSFHEG00000001743)	armc8 (ENSFHEG00000001770)	ENSFHEG00000001877	idh1 (ENSFHEG00000001904) #22	ENSFHEG00000001913	AKAP11 (ENSFHEG00000001932)	DGKH (ENSFHEG00000001969)	vwa8 (ENSFHEG00000002129)	rgcc (ENSFHEG00000000067)	f5 (ENSFHEG00000002224)	slc35a5 (ENSFHEG00000002238)	ccdc80 (ENSFHEG00000002273)	ENSFHEG00000002293	KDM6A (ENSFHEG00000002342)	fundc1 (ENSFHEG00000002361)	ENSFHEG00000002371
Sheepshead minnow	MODERN SPECIES	1972																idh1 (ENSCVAG00000002425) #22	ENSCVAG00000000073
Oryzias	ANCESTRAL SPECIES	61	ENSGT00940000155367	ENSGT00390000005727.b	ENSGT00390000006350	ENSGT01050000244956.b	ENSGT00530000063609.a	ENSGT00940000158407	ENSGT00390000008096.B.e.a	ENSGT00940000155792	ENSGT00470000042284	ENSGT00940000160342.g.b	ENSGT00940000162599	ENSGT00940000166096	ENSGT00510000047481.d	ENSGT00390000003033	ENSGT00940000165242.c	ENSGT00390000012547.b #22	ENSGT01070000253816.a.a.b
Oryzias_b	ANCESTRAL SPECIES	72	ENSGT00390000005727.a.a	ENSGT00390000005727.b	ENSGT00390000006350	ENSGT01050000244956.b	ENSGT00530000063609.a	ENSGT00940000158407	ENSGT00390000008096.B.e.a	ENSGT00940000155792	ENSGT00470000042284	ENSGT00940000160342.g.b	ENSGT00940000162599	ENSGT00940000166096	ENSGT00510000047481.d	ENSGT00390000003033	ENSGT00940000165242.c	ENSGT00390000012547.b #22	ENSGT01070000253816.a.a.b	ENSGT00940000153313.B	ENSGT00940000154801.p
Indian medaka	MODERN SPECIES	378																idh1 (ENSOMEG00000011210) #22	ENSOMEG00000011243	AKAP11 (ENSOMEG00000011317)	kif5c (ENSOMEG00000011517)
Javanese ricefish	MODERN SPECIES	8	pnp5b (ENSOJAG00000004883)	ENSOJAG00000004866	ENSOJAG00000004816	ENSOJAG00000004770	ENSOJAG00000004746	ENSOJAG00000004721	ENSOJAG00000004685	PLCL1 (ENSOJAG00000004658)	satb2 (ENSOJAG00000004485)	tbccd1 (ENSOJAG00000004328)	crygs1 (ENSOJAG00000004187)	lcmt2 (ENSOJAG00000004082)	rab5b (ENSOJAG00000004045)	armc8 (ENSOJAG00000003372)	ENSOJAG00000003231	idh1 (ENSOJAG00000003097) #22	ENSOJAG00000003073	AKAP11 (ENSOJAG00000003063)	kif5c (ENSOJAG00000002875)	ENSOJAG00000002855	ENSOJAG00000002809	zeb2a (ENSOJAG00000002773)	gtdc1 (ENSOJAG00000002753)	ENSOJAG00000002656	tp53rk (ENSOJAG00000002627)	ENSOJAG00000002617	ENSOJAG00000002610	ENSOJAG00000002596	ENSOJAG00000002527	ENSOJAG00000002482	ACO1 (ENSOJAG00000002137)
Oryzias_a	ANCESTRAL SPECIES	196																ENSGT00390000012547.b #22	ENSGT01070000253816.a.a.b
Chinese medaka	MODERN SPECIES	259																idh1 (ENSOSIG00000010419) #22	ENSOSIG00000010417
Ovalentaria_B	ANCESTRAL SPECIES	12	ENSGT00390000005727.b	ENSGT00390000006350	ENSGT01050000244956.b	ENSGT00530000063609.a	ENSGT00940000177416	ENSGT00940000158407	ENSGT00390000008096.B.e.a	ENSGT00940000155792	ENSGT00470000042284	ENSGT00940000160342.g.b	ENSGT00940000162599	ENSGT00940000166096	ENSGT00510000047481	ENSGT00390000003033	ENSGT00940000165242.c	ENSGT00390000012547.b #22	ENSGT00390000013820	ENSGT01070000253816.a.a.b	ENSGT00940000153313.B	ENSGT00940000158106	ENSGT00390000006601	ENSGT00390000011709.gb	ENSGT00940000158556	ENSGT00950000182827.A	ENSGT00940000164470.a	ENSGT00940000155202	ENSGT00940000154517.mb	ENSGT00530000063528.B	ENSGT00940000166292	ENSGT00940000166446	ENSGT00990000203619.A.a
Pomacentridae	ANCESTRAL SPECIES	52							ENSGT00390000008096.B.e.a	ENSGT00940000155792	ENSGT00470000042284	ENSGT00940000160342.g.b	ENSGT00940000162599.f	ENSGT00940000166096	ENSGT00510000047481	ENSGT00390000003033	ENSGT00940000165242.c	ENSGT00390000012547.b #22	ENSGT00390000013820	ENSGT01070000253816.a.a.b	ENSGT00940000153313.B	ENSGT00940000158106	ENSGT00390000006601	ENSGT00390000011709.gb	ENSGT00940000158556	ENSGT00950000182827.A	ENSGT00940000164470.a	ENSGT00940000155202	ENSGT00940000154517.mb	ENSGT00530000063528.B	ENSGT00940000166292	ENSGT00940000166446	ENSGT00940000155600.a.b
Pomacentridae_A	ANCESTRAL SPECIES	69							ENSGT00390000008096.B.e.a	ENSGT00940000155792	ENSGT00470000042284	ENSGT00940000160342.g.b	ENSGT00940000162599.f	ENSGT00940000166096	ENSGT00510000047481	ENSGT00390000003033	ENSGT00940000165242.c	ENSGT00390000012547.b #22	ENSGT00390000013820	ENSGT01070000253816.a.a.b	ENSGT00940000153313.B	ENSGT00940000158106	ENSGT00390000006601	ENSGT00390000011709.gb	ENSGT00940000158556	ENSGT00950000182827.A	ENSGT00940000164470.a	ENSGT00940000155202	ENSGT00940000154517.mb	ENSGT00530000063528.B	ENSGT00940000166292	ENSGT00940000166446	ENSGT00990000203619.A.a
Amphiprion	ANCESTRAL SPECIES	61						ENSGT00390000008096.B.e.a	ENSGT00940000155792	ENSGT00470000042284	ENSGT00940000160342.g.b.b	ENSGT00940000160342.g.b.a	ENSGT00940000162599.f	ENSGT00940000166096	ENSGT00510000047481	ENSGT00390000003033	ENSGT00940000165242.c	ENSGT00390000012547.b #22	ENSGT00390000013820	ENSGT01070000253816.a.a.b	ENSGT00940000153313.B	ENSGT00940000158106	ENSGT00390000006601	ENSGT00390000011709.gb	ENSGT00940000158556	ENSGT00950000182827.A	ENSGT00940000164470.a	ENSGT00940000155202	ENSGT00940000154517.mb	ENSGT00530000063528.B	ENSGT00940000166292	ENSGT00940000166446	ENSGT00990000203619.A.a
Orange clownfish	MODERN SPECIES	3	ENSAPEG00000022401	ENSAPEG00000022338	ENSAPEG00000022305	ENSAPEG00000022279	ENSAPEG00000022263	ENSAPEG00000022244	satb2 (ENSAPEG00000022191)	dnajb11 (ENSAPEG00000022169)	tbccd1 (ENSAPEG00000022111)	CRYGS (ENSAPEG00000022108)	lcmt2 (ENSAPEG00000022076)	rab5b (ENSAPEG00000021965)	dbr1 (ENSAPEG00000021944)	armc8 (ENSAPEG00000021898)	ENSAPEG00000021607	idh1 (ENSAPEG00000021529) #22	ENSAPEG00000021507	ENSAPEG00000021497	AKAP11 (ENSAPEG00000021480)	DGKH (ENSAPEG00000021400)	vwa8 (ENSAPEG00000021150)	rgcc (ENSAPEG00000021108)	f5 (ENSAPEG00000020981)	slc35a5 (ENSAPEG00000020922)	ccdc80 (ENSAPEG00000020910)	KDM6A (ENSAPEG00000020685)	fundc1 (ENSAPEG00000020645)	efhc2 (ENSAPEG00000020493)	ENSAPEG00000020473	mao (ENSAPEG00000020420)	GPR82 (ENSAPEG00000020396)
Clown anemonefish	MODERN SPECIES	2758																idh1 (ENSAOCG00000006379) #22
Spiny chromis	MODERN SPECIES	880																idh1 (ENSAPOG00000022757) #22	ENSAPOG00000022707	ENSAPOG00000022693	ENSAPOG00000022682	ENSAPOG00000022661	AKAP11 (ENSAPOG00000022655)	ENSAPOG00000022639
Bicolor damselfish	MODERN SPECIES	1596																idh1 (ENSSPAG00000009178) #22	ENSSPAG00000009213	AKAP11 (ENSSPAG00000009230)	ENSSPAG00000009282
Cichlidae	DUPLICATION
Cichlidae	ANCESTRAL SPECIES	52																ENSGT00390000012547.b.u #22	ENSGT00390000013820	ENSGT01070000253816.a.a.b	ENSGT00940000153313.B	ENSGT00940000158106	ENSGT00390000006601	ENSGT00390000011709.gb	ENSGT00940000158556	ENSGT00950000182827.A	ENSGT00940000164470.a	ENSGT00940000155202	ENSGT00940000154517.mb	ENSGT00530000063528.B	ENSGT00940000166292	ENSGT00940000166446	ENSGT00990000203619.A.a
Pseudocrenilabrinae	ANCESTRAL SPECIES	30	ENSGT00940000163148.a.b.b.a.b.b.b.b	ENSGT00940000163148.a.b.b.a.b.a.c.b	ENSGT00940000163148.a.b.b.a.b.a.c.a.b.j	ENSGT00940000163148.a.b.b.a.b.a.c.a.b.i	ENSGT00940000163148.a.a.b	ENSGT00940000163148.a.b.b.a.a.b	ENSGT00940000163322.a.a.a	ENSGT00940000163494.a.a.c.b.a	ENSGT00940000163494.a.a.c.a.c	ENSGT00940000156768	ENSGT00940000165279.c	ENSGT00940000177452	ENSGT01090000259987.b.b.a.b	ENSGT00940000157201	ENSGT00390000012204	ENSGT00390000012547.b.u #22	ENSGT00390000013820	ENSGT01070000253816.a.a.b	ENSGT00940000153313.B	ENSGT00940000158106	ENSGT00390000006601	ENSGT00390000011709.gb	ENSGT00940000158556	ENSGT00950000182827.A	ENSGT00940000164470.a	ENSGT00940000155202	ENSGT00940000154517.mb	ENSGT00530000063528.B	ENSGT00940000166292	ENSGT00940000166446	ENSGT00990000203619.A.a
Pseudocrenilabrinae_A	ANCESTRAL SPECIES	37	ENSGT00940000163148.a.b.b.a.b.b.b.b	ENSGT00940000163148.a.b.b.a.b.a.c.b	ENSGT00940000163148.a.b.b.a.b.a.c.a.b.j	ENSGT00940000163148.a.b.b.a.b.a.c.a.b.i	ENSGT00940000163148.a.a.b	ENSGT00940000163148.a.b.b.a.a.b	ENSGT00940000163322.a.a.a	ENSGT00940000163494.a.a.c.b.a	ENSGT00940000163494.a.a.c.a.c	ENSGT00940000156768	ENSGT00940000165279.c	ENSGT00940000177452	ENSGT01090000259987.b.b.a.b	ENSGT00940000157201	ENSGT00390000012204	ENSGT00390000012547.b.u #22	ENSGT00390000013820	ENSGT01070000253816.a.a.b	ENSGT00940000153313.B	ENSGT00940000158106	ENSGT00390000006601	ENSGT00390000011709.gb	ENSGT00940000158556	ENSGT00950000182827.A	ENSGT00940000164470.a	ENSGT00940000155202	ENSGT00940000154517.mb	ENSGT00530000063528.B	ENSGT00940000166292	ENSGT00940000166446.d.b	ENSGT00990000203619.A.a.e
Haplochromini	ANCESTRAL SPECIES	46	ENSGT00940000163148.a.b.b.a.b.a.c.b	ENSGT00940000163148.a.b.b.a.b.a.c.a.b.j	ENSGT00940000163148.a.b.b.a.b.a.c.a.b.i	ENSGT00940000163148.a.a.b	ENSGT00940000163148.a.b.b.a.a.b	ENSGT00940000163322.a.a.a	ENSGT00940000163494.a.a.c.b.a	ENSGT00940000163494.a.a.c.a.c	ENSGT00390000019406.w.b	ENSGT00940000156768	ENSGT00940000165279.c	ENSGT00940000177452	ENSGT01090000259987.b.b.a.b	ENSGT00940000157201	ENSGT00390000012204	ENSGT00390000012547.b.u #22	ENSGT00390000013820	ENSGT01070000253816.a.a.b	ENSGT00940000153313.B	ENSGT00940000158106	ENSGT00390000006601	ENSGT01100000267124	ENSGT00940000158556	ENSGT00950000182827.A	ENSGT00940000164470.a	ENSGT00940000155202	ENSGT00940000154517.mb	ENSGT00530000063528.B	ENSGT00940000166292	ENSGT00940000166446.d.a	ENSGT00990000203619.A.a.e
Haplochromini_A	ANCESTRAL SPECIES	51	ENSGT00940000163148.a.b.b.a.b.b.b.b	ENSGT00940000163148.a.b.b.a.b.a.c.b	ENSGT00940000163148.a.b.b.a.b.a.c.a.b.j	ENSGT00940000163148.a.b.b.a.b.a.c.a.b.i	ENSGT00940000163148.a.a.b	ENSGT00940000163148.a.b.b.a.a.b	ENSGT00940000163322.a.a.a	ENSGT00940000163494.a.a.c.b.a	ENSGT00940000163494.a.a.c.a.c	ENSGT00390000019406.w.b	ENSGT00940000156768	ENSGT00940000165279.c	ENSGT01090000259987.b.b.a.b	ENSGT00940000157201	ENSGT00390000012204	ENSGT00390000012547.b.u #22	ENSGT00390000013820	ENSGT01070000253816.a.a.b	ENSGT00940000153313.B	ENSGT00940000158106	ENSGT00390000006601	ENSGT01100000267124	ENSGT00940000158556	ENSGT00950000182827.A	ENSGT00940000164470.a	ENSGT00940000155202	ENSGT00940000154517.mb	ENSGT00530000063528.B	ENSGT00940000166292	ENSGT00940000166446.d.a	ENSGT00940000166446.d.b
Haplochromini_B	ANCESTRAL SPECIES	36	ENSGT00940000163148.a.b.b.a.b.a.c.a.b.i	ENSGT00940000163148.a.b.b.a.b.a.c.b.h	ENSGT00940000163148.a.a.b	ENSGT00940000163148.a.b.b.a.a.b	ENSGT00940000163322.a.a.a	ENSGT00940000163494.a.a.c.b.a	ENSGT00940000163494.a.a.c.a.c	ENSGT00390000019406.w.b	ENSGT00940000180828	ENSGT00940000156768	ENSGT00940000165279.c	ENSGT00940000177452	ENSGT01090000259987.b.b.a.b	ENSGT00940000157201	ENSGT00390000012204	ENSGT00390000012547.b.u #22	ENSGT00390000013820	ENSGT01070000253816.a.a.b	ENSGT00940000153313.B	ENSGT00940000158106	ENSGT00390000006601	ENSGT00390000011709.gb	ENSGT00940000158556	ENSGT00950000182827.A	ENSGT00940000164470.a	ENSGT00940000155202	ENSGT00940000154517.mb	ENSGT00530000063528.B	ENSGT00940000166292	ENSGT00940000166446.c.b.b	ENSGT00940000166446.c.a
Zebra mbuna	MODERN SPECIES	1098	ENSMZEG00005021176	ENSMZEG00005021171	ENSMZEG00005021116	ENSMZEG00005021114	ENSMZEG00005021113	crygm3 (ENSMZEG00005021001)	crygs4 (ENSMZEG00005020993)	crygs3 (ENSMZEG00005020992)	sqor (ENSMZEG00005020989)	ENSMZEG00005020986	DGKG (ENSMZEG00005020981)	etv5a (ENSMZEG00005020974)	itgb5 (ENSMZEG00005020966)	tnfaip6 (ENSMZEG00005020957)	rif1 (ENSMZEG00005020920)	idh1 (ENSMZEG00005020906) #22	EPSTI1 (ENSMZEG00005020903)	ENSMZEG00005020900	ENSMZEG00005020896	AKAP11 (ENSMZEG00005020893)	DGKH (ENSMZEG00005020873)	vwa8 (ENSMZEG00005020838)	rgcc (ENSMZEG00005020831)	f5 (ENSMZEG00005020824)	slc35a5 (ENSMZEG00005020821)	ccdc80 (ENSMZEG00005020819)	KDM6A (ENSMZEG00005020798)	fundc1 (ENSMZEG00005020791)	efhc2 (ENSMZEG00005020787)	ENSMZEG00005020784	mao (ENSMZEG00005020779)
Eastern happy	MODERN SPECIES	7	ENSACLG00000011989	efhc2 (ENSACLG00000011880)	fundc1 (ENSACLG00000011814)	KDM6A (ENSACLG00000011692)	ccdc80 (ENSACLG00000011459)	slc35a5 (ENSACLG00000011451)	f5 (ENSACLG00000011439)	rgcc (ENSACLG00000011410)	vwa8 (ENSACLG00000011362)	DGKH (ENSACLG00000010870)	ENSACLG00000010849	AKAP11 (ENSACLG00000010835)	ENSACLG00000010828	ENSACLG00000010762	idh1 (ENSACLG00000010612) #22	idh1 (ENSACLG00000010579) #22	ENSACLG00000010557	ENSACLG00000010549	RAPH1 (ENSACLG00000010455)	ENSACLG00000010242	ENSACLG00000010228	ENSACLG00000010174	ENSACLG00000010162	ENSACLG00000010153	ENSACLG00000010148	ENSACLG00000010137	ENSACLG00000009871	ENSACLG00000009868	ENSACLG00000009858	ENSACLG00000009851	ENSACLG00000009846
P. nyererei	MODERN SPECIES	455																idh1 (ENSPNYG00000011180) #22	ENSPNYG00000011205	AKAP11 (ENSPNYG00000011223)	DGKH (ENSPNYG00000011257)	vwa8 (ENSPNYG00000011389)	ENSPNYG00000011660	rgcc (ENSPNYG00000011675)	f5 (ENSPNYG00000011696)	slc35a5 (ENSPNYG00000011741)	ccdc80 (ENSPNYG00000011778)	KDM6A (ENSPNYG00000011879)	fundc1 (ENSPNYG00000011956)	efhc2 (ENSPNYG00000011988)	ENSPNYG00000012013	mao (ENSPNYG00000012032)	ENSPNYG00000012071
Burton s mouthbrooder	MODERN SPECIES	548																idh1 (ENSHBUG00000014969) #22	ENSHBUG00000014948	ENSHBUG00000000949	AKAP11 (ENSHBUG00000014928)	DGKH (ENSHBUG00000014882)	vwa8 (ENSHBUG00000014695)	ENSHBUG00000014596	rgcc (ENSHBUG00000014585)	f5 (ENSHBUG00000000424)	slc35a5 (ENSHBUG00000014527)	ccdc80 (ENSHBUG00000014497)	KDM6A (ENSHBUG00000014387)	fundc1 (ENSHBUG00000012775)	efhc2 (ENSHBUG00000012733)	ENSHBUG00000012711	ENSHBUG00000012699
Lyretail cichlid	MODERN SPECIES	439																idh1 (ENSNBRG00000019389) #22	ENSNBRG00000019415	AKAP11 (ENSNBRG00000019442)	DGKH (ENSNBRG00000019470)	vwa8 (ENSNBRG00000019546)	rgcc (ENSNBRG00000019647)	f5 (ENSNBRG00000019729)	slc35a5 (ENSNBRG00000020014)	ccdc80 (ENSNBRG00000020040)	KDM6A (ENSNBRG00000020087)	fundc1 (ENSNBRG00000020128)	efhc2 (ENSNBRG00000020155)	ENSNBRG00000020193	ENSNBRG00000020201	ENSNBRG00000020219	CASK (ENSNBRG00000020260)
Nile tilapia	MODERN SPECIES	7	si:dkey-57a22.15 (ENSONIG00000033087)	zgc:153846 (ENSONIG00000013736)	ENSONIG00000032763	ENSONIG00000043101	crygm5 (ENSONIG00000037083)	crygm3 (ENSONIG00000013724)	ENSONIG00000037982	crygs4 (ENSONIG00000013721)	crygs3 (ENSONIG00000013719)	ENSONIG00000013705	etv5a (ENSONIG00000013700)	ENSONIG00000024723	itgb5 (ENSONIG00000013667)	tnfaip6 (ENSONIG00000013664)	rif1 (ENSONIG00000013657)	idh1 (ENSONIG00000016369) #22	EPSTI1 (ENSONIG00000042475)	ENSONIG00000016368	AKAP11 (ENSONIG00000016365)	DGKH (ENSONIG00000016354)	vwa8 (ENSONIG00000016347)	rgcc (ENSONIG00000016346)	f5 (ENSONIG00000016333)	slc35a5 (ENSONIG00000016329)	ccdc80 (ENSONIG00000016325)	ENSONIG00000038809	ENSONIG00000034785	KDM6A (ENSONIG00000016301)	fundc1 (ENSONIG00000016299)	efhc2 (ENSONIG00000016295)	ndp (ENSONIG00000036280)
Midas cichlid	MODERN SPECIES	1136																idh1 (ENSACIG00000007114) #22	ENSACIG00000007103	AKAP11 (ENSACIG00000007030)	DGKH (ENSACIG00000006953)	vwa8 (ENSACIG00000006776)
Cichlidae	ANCESTRAL SPECIES																	ENSGT00390000012547.b.v #22
Pseudocrenilabrinae	ANCESTRAL SPECIES																	ENSGT00390000012547.b.v #22
Pseudocrenilabrinae_A	ANCESTRAL SPECIES																	ENSGT00390000012547.b.v #22
Haplochromini	ANCESTRAL SPECIES																	ENSGT00390000012547.b.v #22
Haplochromini_A	ANCESTRAL SPECIES																	ENSGT00390000012547.b.v #22
Haplochromini_B	ANCESTRAL SPECIES																	ENSGT00390000012547.b.v #22
Eastern happy	MODERN SPECIES	7	ENSACLG00000009851	ENSACLG00000009858	ENSACLG00000009868	ENSACLG00000009871	ENSACLG00000010137	ENSACLG00000010148	ENSACLG00000010153	ENSACLG00000010162	ENSACLG00000010174	ENSACLG00000010228	ENSACLG00000010242	RAPH1 (ENSACLG00000010455)	ENSACLG00000010549	ENSACLG00000010557	idh1 (ENSACLG00000010579) #22	idh1 (ENSACLG00000010612) #22	ENSACLG00000010762	ENSACLG00000010828	AKAP11 (ENSACLG00000010835)	ENSACLG00000010849	DGKH (ENSACLG00000010870)	vwa8 (ENSACLG00000011362)	rgcc (ENSACLG00000011410)	f5 (ENSACLG00000011439)	slc35a5 (ENSACLG00000011451)	ccdc80 (ENSACLG00000011459)	KDM6A (ENSACLG00000011692)	fundc1 (ENSACLG00000011814)	efhc2 (ENSACLG00000011880)	ENSACLG00000011989	mao (ENSACLG00000012011)
Midas cichlid	MODERN SPECIES	49																idh1 (ENSACIG00000015438) #22	dolpp1 (ENSACIG00000015452)	NTNG2 (ENSACIG00000015470)	rapgef1b (ENSACIG00000015498)	uck1 (ENSACIG00000015555)	dnlz (ENSACIG00000015579)	lrrc8aa (ENSACIG00000015591)	phyhd1 (ENSACIG00000015609)	dolk (ENSACIG00000015640)	NUP188 (ENSACIG00000015653)	ENSACIG00000015759	ENSACIG00000015778	B3GALT9 (ENSACIG00000015792)	psmd5 (ENSACIG00000015802)	KCNT1 (ENSACIG00000015879)	ENSACIG00000015922
Protacanthopterygii	ANCESTRAL SPECIES	18	ENSGT00940000155367	ENSGT00390000005727.b	ENSGT00390000006350	ENSGT01050000244956.b	ENSGT00530000063609.a	ENSGT00940000158407	ENSGT00390000008096.B.e.a	ENSGT00940000155792	ENSGT00470000042284	ENSGT00940000160342.g.b	ENSGT00940000162599	ENSGT00940000166096	ENSGT00510000047481	ENSGT00390000003033	ENSGT00940000165242.e	ENSGT00390000012547.b #22	ENSGT00940000159743 #31	ENSGT00940000162639.a #32	ENSGT00940000154453.a.b.a.a.a ##33	ENSGT00940000155408.o.a #35	ENSGT00940000155235.k.a #36	ENSGT00940000178681	ENSGT00940000163794	ENSGT00940000165586.a	ENSGT00940000154349	ENSGT00940000159224.a	ENSGT00940000156332	ENSGT00940000157211.l	ENSGT00390000010354	ENSGT00940000156353.u.a	ENSGT00940000159094.f #20
Northern pike	MODERN SPECIES	15	coq10b (ENSELUG00000005921)	hspd1 (ENSELUG00000005904)	hspe1 (ENSELUG00000005886)	MOB4 (ENSELUG00000005831)	rftn2 (ENSELUG00000005798)	PLCL1 (ENSELUG00000001594)	satb2 (ENSELUG00000005722)	dnajb11 (ENSELUG00000005667)	tbccd1 (ENSELUG00000005651)	CRYGS (ENSELUG00000005634)	lcmt2 (ENSELUG00000005620)	rab5b (ENSELUG00000033798)	dbr1 (ENSELUG00000005587)	armc8 (ENSELUG00000005566)	ENSELUG00000005519	idh1 (ENSELUG00000005492) #22	PLEKHM3 (ENSELUG00000005453) #31	ENSELUG00000005440	ccnyl1 (ENSELUG00000005420) ##33	creb1b (ENSELUG00000005394) #35	klf7b (ENSELUG00000005383) #36	ENSELUG00000027165	ENSELUG00000026268	zgc:162396 (ENSELUG00000005372)	zgc:162780 (ENSELUG00000005357)	ube2f (ENSELUG00000005321)	ramp1 (ENSELUG00000005272)	epb41l5 (ENSELUG00000005243)	ptpn4a (ENSELUG00000005149)	tmem177 (ENSELUG00000005098)	MRAS (ENSELUG00000005090)
Salmoninae	DUPLICATION
Salmoninae	ANCESTRAL SPECIES																	ENSGT00390000012547.b.w #22
Salmoninae_a	ANCESTRAL SPECIES																	ENSGT00390000012547.b.w #22
Oncorhynchus	ANCESTRAL SPECIES																	ENSGT00390000012547.b.w #22
Oncorhynchus_a	ANCESTRAL SPECIES																	ENSGT00390000012547.b.w #22
Chinook salmon	MODERN SPECIES	1963																ENSOTSG00005024444 #22
Salmoninae	DUPLICATION
Salmoninae	ANCESTRAL SPECIES	744												ENSGT00940000166096.g	ENSGT00510000047481.f.a	ENSGT00390000003033.c	ENSGT00940000165242.e.b.a.a	ENSGT00390000012547.b.x.a #22	ENSGT00940000159743.c.b #31	ENSGT00940000159743.d #31	ENSGT00940000162639.a #32	ENSGT00940000154453.a.b.a.a.a.a ##33	ENSGT00940000155408.o.a.f #35	ENSGT00940000155235.k.a.d #36
Salmoninae_a	ANCESTRAL SPECIES		ENSGT00950000182908.D.o	ENSGT00390000018393.db	ENSGT00940000155367.f	ENSGT00390000005727.b.e	ENSGT00390000006350.f	ENSGT01050000244956.b.u.b	ENSGT00530000063609.a.h	ENSGT00940000158407.g	ENSGT00390000008096.B.e.a.d	ENSGT00940000155792.h	ENSGT00470000042284	ENSGT00940000166096.g	ENSGT00510000047481.f.a	ENSGT00390000003033.c	ENSGT00940000165242.e.b.a.a	ENSGT00390000012547.b.x.a #22	ENSGT00940000159743.c.b #31	ENSGT00940000161191.B.a.a	ENSGT00940000159743.d #31	ENSGT00940000162639.a.b #32	ENSGT00940000154453.a.b.a.a.a.a ##33	ENSGT00940000155408.o.a.f #35	ENSGT00940000155235.k.a.d #36	ENSGT00940000178681.a.b	ENSGT00940000165586.a.a	ENSGT00940000154349.c.b	ENSGT00940000159224.a.a.a	ENSGT00940000156332.r	ENSGT00940000157211.l.b	ENSGT00390000010354.d	ENSGT00940000156353.u.a.b
Oncorhynchus	ANCESTRAL SPECIES	13	ENSGT00390000018393.db	ENSGT00940000155367.f	ENSGT00390000005727.b.e	ENSGT00390000006350.f	ENSGT01050000244956.b.u.b	ENSGT00530000063609.a.h	ENSGT00940000158407.g	ENSGT00390000008096.B.e.a.d	ENSGT00940000155792.h	ENSGT00470000042284	ENSGT01000000220382	ENSGT00940000166096.g	ENSGT00510000047481.f.a	ENSGT00390000003033.c	ENSGT00940000165242.e.b.b	ENSGT00390000012547.b.x.a #22	ENSGT00940000159743.c.b #31	ENSGT00940000162639.a.b #32	ENSGT00940000154453.a.b.a.a.a.a ##33	ENSGT00940000155408.o.a.f #35	ENSGT00940000155235.k.a.d #36	ENSGT00940000178681.a.b	ENSGT00940000165586.a.a	ENSGT00940000154349.c.b	ENSGT00940000159224.a.a.a	ENSGT00940000159224.a.b	ENSGT00940000156332.r	ENSGT00940000157211.l.b	ENSGT00390000010354.d	ENSGT00940000156353.u.a.b	ENSGT00940000159094.f.b #20
Rainbow trout	MODERN SPECIES	14	ANKRD44 (ENSOMYG00000019539)	SF3B1 (ENSOMYG00000019571)	coq10b (ENSOMYG00000019601)	hspd1 (ENSOMYG00000019648)	mob3 (ENSOMYG00000019689)	rftn2 (ENSOMYG00000056375)	ENSOMYG00000019746	satb2 (ENSOMYG00000068548)	dnajb11 (ENSOMYG00000019756)	ENSOMYG00000019760	ENSOMYG00000019765	rab5b (ENSOMYG00000019771)	dbr1 (ENSOMYG00000019774)	armc8 (ENSOMYG00000019919)	ENSOMYG00000064355	idh1 (ENSOMYG00000022000) #22	PLEKHM3 (ENSOMYG00000022306) #31	ENSOMYG00000071556	fzd5 (ENSOMYG00000073763) #32	ccnyl1 (ENSOMYG00000022318) ##33	creb1b (ENSOMYG00000022353) #35	ENSOMYG00000076803	klf7b (ENSOMYG00000022387) #36	ENSOMYG00000054520	ENSOMYG00000051532	ENSOMYG00000050926	ENSOMYG00000060013	zgc:162780 (ENSOMYG00000022420)	ube2f (ENSOMYG00000022455)	ramp1 (ENSOMYG00000022499)	ENSOMYG00000077770
Oncorhynchus_a	ANCESTRAL SPECIES	11	ENSGT00950000182908.D.o	ENSGT00390000018393.db	ENSGT00940000155367.f	ENSGT00390000005727.b.e	ENSGT00390000006350.f	ENSGT01050000244956.b.u.b	ENSGT00530000063609.a.h	ENSGT00940000158407.g	ENSGT00390000008096.B.e.a.d	ENSGT00940000155792.h	ENSGT00470000042284	ENSGT01000000220382	ENSGT00940000166096.g	ENSGT00510000047481.f.a	ENSGT00390000003033.c	ENSGT00390000012547.b.x.a #22	ENSGT00940000159743.c.b #31	ENSGT00940000162639.a.b #32	ENSGT00940000154453.a.b.a.a.a.a ##33	ENSGT00940000155408.o.a.f #35	ENSGT00940000155235.k.a.d #36	ENSGT00940000178681.a.b	ENSGT00940000165586.a.a	ENSGT00940000154349.c.b	ENSGT00940000159224.a.b	ENSGT00940000156332.r	ENSGT00940000157211.l.b	ENSGT00390000010354.d	ENSGT00940000156353.u.a.b	ENSGT00940000159094.f.b #20	ENSGT00390000001170.a.a.d.b.a
Chinook salmon	DUPLICATION
Chinook salmon	MODERN SPECIES	111												ENSOTSG00005012634	rab5b (ENSOTSG00005012633)	dbr1 (ENSOTSG00005012630)	armc8 (ENSOTSG00005012628)	idh1 (ENSOTSG00005012626) #22	ENSOTSG00005012625 #31
Chinook salmon	MODERN SPECIES	2997											dnajb11 (ENSOTSG00005046652)	tbccd1 (ENSOTSG00005046675)	rab5b (ENSOTSG00005046676)	dbr1 (ENSOTSG00005046678)	armc8 (ENSOTSG00005046679)	idh1 (ENSOTSG00005046680) #22	ENSOTSG00005046681 #31
Coho salmon	MODERN SPECIES	18	ANKRD44 (ENSOKIG00005017701)	SF3B1 (ENSOKIG00005020547)	coq10b (ENSOKIG00005020582)	hspd1 (ENSOKIG00005020599)	hspe1 (ENSOKIG00005020651)	MOB4 (ENSOKIG00005020680)	rftn2 (ENSOKIG00005020694)	PLCL1 (ENSOKIG00005020711)	satb2 (ENSOKIG00005020774)	dnajb11 (ENSOKIG00005020809)	tbccd1 (ENSOKIG00005020923)	ENSOKIG00005020949	rab5b (ENSOKIG00005020965)	dbr1 (ENSOKIG00005021000)	armc8 (ENSOKIG00005021250)	idh1 (ENSOKIG00005024323) #22	PLEKHM3 (ENSOKIG00005024517) #31	fzd5 (ENSOKIG00005024531) #32	ccnyl1 (ENSOKIG00005024540) ##33	creb1b (ENSOKIG00005024554) #35	klf7b (ENSOKIG00005024600) #36	ENSOKIG00005024623	ENSOKIG00005024634	zgc:162780 (ENSOKIG00005024648)	ube2f (ENSOKIG00005024682)	epb41l5 (ENSOKIG00005024768)	ptpn4a (ENSOKIG00005024895)	tmem177 (ENSOKIG00005025174)	MRAS (ENSOKIG00005025188)	ENSOKIG00005025223	pth2ra (ENSOKIG00005025342) #20
Salmo	ANCESTRAL SPECIES	10	ENSGT00390000018393.db	ENSGT00940000155367.f	ENSGT00390000005727.b.e	ENSGT00390000006350.f	ENSGT01050000244956.b.u.b	ENSGT00530000063609.a.h	ENSGT00940000158407.g	ENSGT00390000008096.B.e.a.d	ENSGT00940000155792.h	ENSGT00470000042284	ENSGT00940000162599.n	ENSGT00940000166096.g	ENSGT00510000047481.f.a	ENSGT00390000003033.c	ENSGT00940000165242.e.b.a.a	ENSGT00390000012547.b.x.a #22	ENSGT00940000159743.c.b #31	ENSGT00940000161191.B.a.a	ENSGT00940000159743.d #31	ENSGT00940000162639.a.b #32	ENSGT00940000154453.a.b.a.a.a.a ##33	ENSGT00940000155408.o.a.f #35	ENSGT00940000155235.k.a.d #36	ENSGT00940000178681.a.b	ENSGT00940000165586.a.a	ENSGT00940000154349.c.b	ENSGT00940000159224.a.a.a	ENSGT00940000156332.r	ENSGT00940000157211.l.b	ENSGT00390000010354.d	ENSGT00940000156353.u.a.b
River trout	MODERN SPECIES	12	SF3B1 (ENSSTUG00000012136)	coq10b (ENSSTUG00000012103)	hspd1 (ENSSTUG00000012049)	hspe1 (ENSSTUG00000012021)	MOB4 (ENSSTUG00000012002)	rftn2 (ENSSTUG00000011987)	PLCL1 (ENSSTUG00000011969)	satb2 (ENSSTUG00000011931)	dnajb11 (ENSSTUG00000011647)	tbccd1 (ENSSTUG00000011632)	ENSSTUG00000011626	rab5b (ENSSTUG00000011617)	dbr1 (ENSSTUG00000011595)	armc8 (ENSSTUG00000010289)	ENSSTUG00000010236	idh1 (ENSSTUG00000010124) #22	PLEKHM3 (ENSSTUG00000010086) #31	ENSSTUG00000010079	ccnyl1 (ENSSTUG00000009996) ##33	creb1b (ENSSTUG00000009944) #35	klf7b (ENSSTUG00000009938) #36	ENSSTUG00000009931	zgc:162780 (ENSSTUG00000009925)	ube2f (ENSSTUG00000009893)	ramp1 (ENSSTUG00000009887)	epb41l5 (ENSSTUG00000009747)	ptpn4a (ENSSTUG00000009601)	tmem177 (ENSSTUG00000009587)	MRAS (ENSSTUG00000009578)	ENSSTUG00000009573	pth2ra (ENSSTUG00000009522) #20
Atlantic salmon	MODERN SPECIES	13	hspe1 (ENSSSAG00000081441)	MOB4 (ENSSSAG00000081444)	rftn2 (ENSSSAG00000111108)	ENSSSAG00000094048	PLCL1 (ENSSSAG00000053340)	ENSSSAG00000088810	ENSSSAG00000053311	satb2 (ENSSSAG00000053203)	dnajb11 (ENSSSAG00000111994)	ENSSSAG00000116518	ENSSSAG00000052141	rab5b (ENSSSAG00000084227)	dbr1 (ENSSSAG00000052088)	armc8 (ENSSSAG00000049392)	ENSSSAG00000049141	idh1 (ENSSSAG00000048877) #22	ENSSSAG00000091454 #31	ENSSSAG00000104346 #31	fzd5 (ENSSSAG00000120506) #32	ccnyl1 (ENSSSAG00000053909) ##33	creb1b (ENSSSAG00000112465) #35	klf7b (ENSSSAG00000053939) #36	ENSSSAG00000088624	ENSSSAG00000106907	ENSSSAG00000105234	zgc:162780 (ENSSSAG00000053955)	ube2f (ENSSSAG00000053963)	ramp1 (ENSSSAG00000082319)	ENSSSAG00000095459	ENSSSAG00000119082	epb41l5 (ENSSSAG00000053983)
Huchen	MODERN SPECIES	2702																idh1 (ENSHHUG00000046746) #22	PLEKHM3 (ENSHHUG00000046733) #31	ENSHHUG00000046730 #31
Salmoninae	ANCESTRAL SPECIES	7	ENSGT00390000005727.b.f	ENSGT01050000244956.b.u.a	ENSGT00530000063609.a.g	ENSGT00940000158407.h	ENSGT00390000008096.B.e.a.c	ENSGT00940000155792.g	ENSGT00390000008096.B.e.a.d	ENSGT00940000155792.h	ENSGT00470000042284	ENSGT00940000160342.g.b	ENSGT00940000162599	ENSGT00940000166096.h	ENSGT00510000047481.f.b	ENSGT00390000003033.d	ENSGT00940000165242.e.a	ENSGT00390000012547.b.x.b #22	ENSGT00940000159743.c.a #31	ENSGT00940000161191.B.a	ENSGT00940000154453.a.b.a.a.a.b ##33	ENSGT00940000155408.o.a.e #35	ENSGT00940000155235.k.a.c #36	ENSGT00940000178681.a.a	ENSGT00940000178681.b	ENSGT00940000163794	ENSGT00940000165586.a.b	ENSGT00940000154349.c.a	ENSGT00940000159224.a.a.b	ENSGT00940000156332.q	ENSGT00940000157211.l.a	ENSGT00390000010354.c	ENSGT00940000156353.u.a.a
Huchen	MODERN SPECIES	217	SF3B1 (ENSHHUG00000025858)	coq10b (ENSHHUG00000025850)	ENSHHUG00000025846	hspd1 (ENSHHUG00000025817)	MOB4 (ENSHHUG00000025751)	rftn2 (ENSHHUG00000025735)	PLCL1 (ENSHHUG00000025727)	satb2 (ENSHHUG00000025718)	dnajb11 (ENSHHUG00000025637)	tbccd1 (ENSHHUG00000025625)	crygs1 (ENSHHUG00000025604)	rab5b (ENSHHUG00000025599)	dbr1 (ENSHHUG00000025565)	armc8 (ENSHHUG00000025392)	ENSHHUG00000025387	idh1 (ENSHHUG00000025267) #22	PLEKHM3 (ENSHHUG00000025257) #31
Salmoninae_a	ANCESTRAL SPECIES		ENSGT00390000018393.eb	ENSGT00940000155367.e	ENSGT00390000005727.b.f	ENSGT00390000006350.e	ENSGT01050000244956.b.u.a	ENSGT00530000063609.a.g	ENSGT00940000158407.h	ENSGT00390000008096.B.e.a.c	ENSGT00940000155792.g	ENSGT00940000160342.g.b	ENSGT00940000162599	ENSGT00940000166096.h	ENSGT00510000047481.f.b	ENSGT00390000003033.d	ENSGT00940000165242.e.a	ENSGT00390000012547.b.x.b #22	ENSGT00940000159743.c.a #31	ENSGT00940000161191.B.a.b	ENSGT00940000154453.a.b.a.a.a.b ##33	ENSGT00940000155408.o.a.e #35	ENSGT00940000155235.k.a.c #36	ENSGT00940000178681.a.a	ENSGT00940000163794	ENSGT00940000165586.a.b	ENSGT00940000154349.c.a	ENSGT00940000159224.a.a.b	ENSGT00940000156332.q	ENSGT00940000157211.l.a	ENSGT00390000010354.c	ENSGT00940000156353.u.a.a	ENSGT00940000159094.f.a #20
Salmo	ANCESTRAL SPECIES	15	ENSGT00950000182908.D.p	ENSGT00390000018393.eb	ENSGT00940000155367.e	ENSGT00390000005727.b.f	ENSGT00390000006350.e	ENSGT01050000244956.b.u.a	ENSGT00530000063609.a.g	ENSGT00940000158407.h	ENSGT00390000008096.B.e.a.c	ENSGT00940000155792.g	ENSGT00940000160342.g.b	ENSGT00940000162599.m	ENSGT00940000166096.h	ENSGT00390000003033.d	ENSGT00940000165242.e.a	ENSGT00390000012547.b.x.b #22	ENSGT00940000159743.c.a #31	ENSGT00940000162639.a.a #32	ENSGT00940000154453.a.b.a.a.a.b ##33	ENSGT00940000155408.o.a.e #35	ENSGT00940000155235.k.a.c #36	ENSGT00940000178681.a.a	ENSGT00940000163794	ENSGT00940000154349.c.a	ENSGT00940000159224.a.a.b	ENSGT00940000156332.q	ENSGT00940000157211.l.a	ENSGT00390000010354.c	ENSGT00940000156353.u.a.a	ENSGT00940000159094.f.a #20	ENSGT00390000001170.a.a.d.a
River trout	MODERN SPECIES	16	ANKRD44 (ENSSTUG00000011891)	SF3B1 (ENSSTUG00000011735)	coq10b (ENSSTUG00000011723)	hspd1 (ENSSTUG00000011643)	hspe1 (ENSSTUG00000011583)	MOB4 (ENSSTUG00000011613)	rftn2 (ENSSTUG00000011566)	PLCL1 (ENSSTUG00000011559)	satb2 (ENSSTUG00000011531)	dnajb11 (ENSSTUG00000011283)	CRYGS (ENSSTUG00000011277)	lcmt2 (ENSSTUG00000011225)	rab5b (ENSSTUG00000011218)	armc8 (ENSSTUG00000010764)	ENSSTUG00000010728	idh1 (ENSSTUG00000010572) #22	PLEKHM3 (ENSSTUG00000010559) #31	ENSSTUG00000010547	ccnyl1 (ENSSTUG00000010491) ##33	creb1b (ENSSTUG00000010469) #35	klf7b (ENSSTUG00000010461) #36	zgc:162396 (ENSSTUG00000010404)	ube2f (ENSSTUG00000010326)	ramp1 (ENSSTUG00000010313)	epb41l5 (ENSSTUG00000010250)	ptpn4a (ENSSTUG00000010013)	tmem177 (ENSSTUG00000009990)	MRAS (ENSSTUG00000009970)	pth2ra (ENSSTUG00000009752) #20	tmem163a (ENSSTUG00000009717)	ccnt2a (ENSSTUG00000009693)
Atlantic salmon	MODERN SPECIES	17	ANKRD44 (ENSSSAG00000053961)	SF3B1 (ENSSSAG00000053819)	coq10b (ENSSSAG00000053811)	hspd1 (ENSSSAG00000053792)	hspe1 (ENSSSAG00000053757)	rftn2 (ENSSSAG00000053726)	ENSSSAG00000083923	ENSSSAG00000099049	satb2 (ENSSSAG00000050749)	dnajb11 (ENSSSAG00000103574)	ENSSSAG00000103538	ENSSSAG00000050803	ENSSSAG00000084004	armc8 (ENSSSAG00000050879)	ENSSSAG00000090279	idh1 (ENSSSAG00000053426) #22	plekhm3 (ENSSSAG00000048838) #31	fzd5 (ENSSSAG00000106789) #32	ccnyl1 (ENSSSAG00000048803) ##33	creb1b (ENSSSAG00000089906) #35	ENSSSAG00000083151	klf7b (ENSSSAG00000048735) #36	ENSSSAG00000106485	zgc:162396 (ENSSSAG00000102136)	zgc:162396 (ENSSSAG00000048731)	Y3374 (ENSSSAG00000048703)	ube2f (ENSSSAG00000048635)	ramp1 (ENSSSAG00000048622)	epb41l5 (ENSSSAG00000048574)	ptpn4a (ENSSSAG00000046847)	tmem177 (ENSSSAG00000046807)
Oncorhynchus	ANCESTRAL SPECIES	3	ENSGT00390000018393.eb	ENSGT00940000155367.e	ENSGT00390000005727.b.f	ENSGT00390000006350.e	ENSGT01050000244956.b.u.a	ENSGT00530000063609.a.g	ENSGT00940000158407.h	ENSGT00390000008096.B.e.a.c	ENSGT00940000155792.g	ENSGT00940000160342.g.b	ENSGT01060000253581	ENSGT00940000166096.h	ENSGT00510000047481.f.b	ENSGT00390000003033.d	ENSGT00940000165242.e.a	ENSGT00390000012547.b.x.b #22	ENSGT00940000159743.c.a #31	ENSGT00940000161191.B.a.b	ENSGT00940000154453.a.b.a.a.a.b ##33	ENSGT00940000155408.o.a.e #35	ENSGT00940000155235.k.a.c #36	ENSGT00940000178681.a.a	ENSGT00940000163794	ENSGT00940000165586.a.b	ENSGT00940000154349.c.a	ENSGT00940000159224.a.a.b	ENSGT00940000156332.q	ENSGT00940000157211.l.a	ENSGT01000000221562	ENSGT00940000156353.u.a.a	ENSGT00940000159094.f.a #20
Oncorhynchus_a	ANCESTRAL SPECIES	8	ENSGT00950000182908.D.p	ENSGT00390000018393.eb	ENSGT00940000155367.e	ENSGT00390000005727.b.f	ENSGT00390000006350.e	ENSGT01050000244956.b.u.a	ENSGT00530000063609.a.g	ENSGT00940000158407.h	ENSGT00390000008096.B.e.a.c	ENSGT00940000155792.g	ENSGT00940000160342.g.b	ENSGT01060000253581	ENSGT00940000166096.h	ENSGT00390000003033.d	ENSGT00940000165242.e.a	ENSGT00390000012547.b.x.b #22	ENSGT00940000159743.c.a #31	ENSGT00940000161191.B.a.b	ENSGT00940000154453.a.b.a.a.a.b ##33	ENSGT00940000155408.o.a.e #35	ENSGT00940000155235.k.a.c #36	ENSGT00940000178681.a.a	ENSGT00940000178681.b	ENSGT00940000163794	ENSGT00940000165586.a.b	ENSGT00940000154349.c.a	ENSGT00940000159224.a.a.b	ENSGT00940000156332.q	ENSGT00940000157211.l.a	ENSGT01000000221562	ENSGT00940000156353.u.a.a
Coho salmon	MODERN SPECIES	11	ANKRD44 (ENSOKIG00005000788)	SF3B1 (ENSOKIG00005000295)	coq10b (ENSOKIG00005000190)	hspd1 (ENSOKIG00005000168)	hspe1 (ENSOKIG00005000118)	MOB4 (ENSOKIG00005000137)	rftn2 (ENSOKIG00005049193)	PLCL1 (ENSOKIG00005049189)	ENSOKIG00005049184	satb2 (ENSOKIG00005049182)	dnajb11 (ENSOKIG00005049174)	CRYGS (ENSOKIG00005049171)	ENSOKIG00005049169	armc8 (ENSOKIG00005049098)	ENSOKIG00005049075	idh1 (ENSOKIG00005048897) #22	PLEKHM3 (ENSOKIG00005048849) #31	ENSOKIG00005048845	ENSOKIG00005048842	ccnyl1 (ENSOKIG00005048836) ##33	creb1b (ENSOKIG00005048824) #35	klf7b (ENSOKIG00005048819) #36	ENSOKIG00005048815	ENSOKIG00005048810	ENSOKIG00005048806	zgc:162396 (ENSOKIG00005048801)	zgc:162396 (ENSOKIG00005048773)	UBE2F (ENSOKIG00005048755)	ramp1 (ENSOKIG00005048750)	epb41l5 (ENSOKIG00005048712)	ptpn4a (ENSOKIG00005048629)
Chinook salmon	MODERN SPECIES	22	ANKRD44 (ENSOTSG00005017574)	SF3B1 (ENSOTSG00005017538)	coq10b (ENSOTSG00005017537)	hspd1 (ENSOTSG00005017536)	hspe1 (ENSOTSG00005017509)	MOB4 (ENSOTSG00005017530)	rftn2 (ENSOTSG00005017506)	PLCL1 (ENSOTSG00005017505)	satb2 (ENSOTSG00005017465)	dnajb11 (ENSOTSG00005017458)	crygs1 (ENSOTSG00005017442)	ENSOTSG00005017439	rab5b (ENSOTSG00005017438)	armc8 (ENSOTSG00005015018)	ENSOTSG00005014983	idh1 (ENSOTSG00005014777) #22	PLEKHM3 (ENSOTSG00005014772) #31	ENSOTSG00005014768	ccnyl1 (ENSOTSG00005014763) ##33	creb1b (ENSOTSG00005014751) #35	klf7b (ENSOTSG00005014750) #36	ENSOTSG00005014749	ENSOTSG00005014748	ENSOTSG00005014747	zgc:162780 (ENSOTSG00005014746)	zgc:162396 (ENSOTSG00005014732)	ube2f (ENSOTSG00005014729)	ramp1 (ENSOTSG00005014727)	epb41l5 (ENSOTSG00005014721)	ptpn4a (ENSOTSG00005014710)	MRAS (ENSOTSG00005014704)
Rainbow trout	MODERN SPECIES	21	coq10b (ENSOMYG00000017107)	ENSOMYG00000017102	hspd1 (ENSOMYG00000017062)	MOB4 (ENSOMYG00000017003)	rftn2 (ENSOMYG00000016981)	ENSOMYG00000016971	satb2 (ENSOMYG00000016906)	dnajb11 (ENSOMYG00000016827)	ENSOMYG00000016813	ENSOMYG00000016754	rab5b (ENSOMYG00000016734)	dbr1 (ENSOMYG00000016707)	armc8 (ENSOMYG00000016390)	ENSOMYG00000056558	ENSOMYG00000016169	idh1 (ENSOMYG00000015786) #22	ENSOMYG00000015759 #31	ENSOMYG00000056930	ENSOMYG00000015746	ccnyl1 (ENSOMYG00000077832) ##33	creb1b (ENSOMYG00000015698) #35	ENSOMYG00000058316	klf7b (ENSOMYG00000015674) #36	ENSOMYG00000059937	zgc:162780 (ENSOMYG00000015651)	zgc:162396 (ENSOMYG00000015599)	ENSOMYG00000061607	ENSOMYG00000015542	ENSOMYG00000053831	ramp1 (ENSOMYG00000015533)	ptpn4a (ENSOMYG00000015383)
Elephant shark	MODERN SPECIES	1561		SPAG16 (ENSCMIG00000014893) #8	IKZF2 (ENSCMIG00000014890) #9	erbb4a (ENSCMIG00000014584) #10	ENSCMIG00000014428	CPS1 (ENSCMIG00000014321) #11	lancl1 (ENSCMIG00000014218) #12	mylz3 (ENSCMIG00000014198) #13	acadl (ENSCMIG00000014191) #14	ENSCMIG00000014187 #15	rpe (ENSCMIG00000014183) #16	UNC80 (ENSCMIG00000014165) #17	ENSCMIG00000014152 #18	pth2ra (ENSCMIG00000014149) #20	pikfyve (ENSCMIG00000013940) #21	idh1 (ENSCMIG00000013750) #22	ENSCMIG00000013744	ENSCMIG00000013740	ENSCMIG00000013735	ENSCMIG00000013734	ENSCMIG00000013707	ENSCMIG00000013657	ENSCMIG00000013628	ENSCMIG00000013608	ENSCMIG00000013566	ENSCMIG00000013559	ENSCMIG00000013535	ENSCMIG00000013493	ENSCMIG00000013464	ENSCMIG00000013438	ENSCMIG00000013418
Cyclostomata	ANCESTRAL SPECIES																	ENSGT00390000012547.b #22
Lamprey	MODERN SPECIES	97				zgc:171772 (ENSPMAG00000000001)	ENSPMAG00000000002	ENSPMAG00000000003	ENSPMAG00000000004	ccdc12 (ENSPMAG00000000005)	NBEAL2 (ENSPMAG00000000006)	ENSPMAG00000000007	GCNT3 (ENSPMAG00000010396)	ENSPMAG00000000008	kat2b (ENSPMAG00000000009)	TRPM7 (ENSPMAG00000000010)	ostf1 (ENSPMAG00000000011)	idh1 (ENSPMAG00000000012) #22	sppl2 (ENSPMAG00000000013)	ENSPMAG00000010398	ENSPMAG00000000014
Hagfish	MODERN SPECIES	345												ENSEBUG00000013599	ENSEBUG00000013183	ENSEBUG00000002132	kat2b (ENSEBUG00000004234)	idh1 (ENSEBUG00000012038) #22	ENSEBUG00000012567	ENSEBUG00000006429	ENSEBUG00000008309	ENSEBUG00000015497	ENSEBUG00000003579	gfm1 (ENSEBUG00000012794)	ENSEBUG00000013583
Ciona	ANCESTRAL SPECIES	629														ENSGT00390000001965	ENSGT00940000161979.B	ENSGT00390000012547.b #22
Ciona savignyi	MODERN SPECIES	199	ENSCSAVG00000004650	ENSCSAVG00000004497	ENSCSAVG00000004490	ENSCSAVG00000004485	ENSCSAVG00000004302	ENSCSAVG00000004080	ENSCSAVG00000004073	ENSCSAVG00000004071	ENSCSAVG00000004070	ENSCSAVG00000004069	ENSCSAVG00000004066	ENSCSAVG00000003847	ENSCSAVG00000003842	ENSCSAVG00000003831	ENSCSAVG00000003826	ENSCSAVG00000003653 #22	ENSCSAVG00000003651	ENSCSAVG00000003649	ENSCSAVG00000003647	ENSCSAVG00000003645	ENSCSAVG00000003643	ENSCSAVG00000003633	ENSCSAVG00000003629	ENSCSAVG00000003621	ENSCSAVG00000003603	ENSCSAVG00000003601	ENSCSAVG00000003599	ENSCSAVG00000003595	ENSCSAVG00000003589	ENSCSAVG00000003451	ENSCSAVG00000003359
Ciona intestinalis	MODERN SPECIES	584						ENSCING00000016174	ENSCING00000004720	ENSCING00000024514	ENSCING00000004717	ENSCING00000022577	ENSCING00000021088	ENSCING00000004708	ENSCING00000003018	ENSCING00000003016	zf(c2h2)-10 (ENSCING00000003015)	ENSCING00000018343 #22	ENSCING00000020439	ENSCING00000018156
Ecdysozoa	ANCESTRAL SPECIES																	ENSGT00390000012547.b #22
Fruitfly	MODERN SPECIES	18	Gug (FBgn0010825)	CG6983 (FBgn0035896)	Unr (FBgn0263352)	Cbl (FBgn0020224)	CG32354 (FBgn0052354)	mtrm (FBgn0010431)	Exo70 (FBgn0266667)	Oseg1 (FBgn0265102)	CG13667 (FBgn0035890)	Tpt (FBgn0053057)	mkg-p (FBgn0035889)	CG7120 (FBgn0035888)	Jon66Cii (FBgn0035887)	Jon66Ci (FBgn0035886)	ImpE1 (FBgn0001253)	Idh (FBgn0001248) #22	Culd (FBgn0035880)	GAPcenA (FBgn0035879)	CG7182 (FBgn0035878)	CG7083 (FBgn0035877)	Prim1 (FBgn0011762)	Pex2 (FBgn0035876)	Cpr66Cb (FBgn0035875)	CG34462 (FBgn0085491)	CG34461 (FBgn0250833)	CG13670 (FBgn0035873)	CG43059 (FBgn0262361)	Cpsf6 (FBgn0035872)	BI-1 (FBgn0035871)	Gr66a (FBgn0035870)	Sbp2 (FBgn0087039)
Caenorhabditis elegans	MODERN SPECIES	3	sru-4 (WBGene00005667)	sru-3 (WBGene00005666)	sru-6 (WBGene00005669)	sru-1 (WBGene00005664)	sru-2 (WBGene00005665)	gadr-2 (WBGene00007887)	cng-3 (WBGene00000563)	wrt-3 (WBGene00006949)	F38E11.6 (WBGene00009543)	copb-2 (WBGene00009542)	cpin-1 (WBGene00000775)	cutl-17 (WBGene00009541)	hsp-12.6 (WBGene00002013)	hsp-12.3 (WBGene00002012)	F38E11.9 (WBGene00009544)	idh-1 (WBGene00010317) #22	F59B8.1 (WBGene00010316)	srxa-2 (WBGene00010153)	F56D5.9 (WBGene00010152)	F56D5.5 (WBGene00010149)	F56D5.6 (WBGene00010150)	F56D5.3 (WBGene00010148)	F56D5.2 (WBGene00010147)	col-121 (WBGene00000695)	daf-15 (WBGene00000911)	C10C5.7 (WBGene00007511)	C10C5.5 (WBGene00007509)	C10C5.4 (WBGene00007508)	C10C5.3 (WBGene00007507)	fbxc-58 (WBGene00007506)	pezo-1 (WBGene00007505)
Bilateria	ANCESTRAL SPECIES																	ENSGT00390000012547.a ##22
Chordata	ANCESTRAL SPECIES																	ENSGT00390000012547.a ##22
Vertebrata	ANCESTRAL SPECIES																	ENSGT00390000012547.a ##22
Gnathostomata	ANCESTRAL SPECIES	54	ENSGT00530000063681.b.a	ENSGT00940000154290.b	ENSGT00440000039958	ENSGT00390000015930	ENSGT00440000039046	ENSGT00940000155771	ENSGT00730000110989	ENSGT00490000043395	ENSGT00940000153352.A	ENSGT00390000012762	ENSGT00940000155949	ENSGT00390000018319.a.b	ENSGT00940000155897	ENSGT00390000007246	ENSGT00390000009329	ENSGT00390000012547.a ##22	ENSGT00940000155498	ENSGT00940000155389	ENSGT00940000157105	ENSGT00390000017024	ENSGT00390000004161	ENSGT00940000157140.b.a.b.b	ENSGT00940000153288.a.b	ENSGT00940000157156	ENSGT00390000004228
Elephant shark	DUPLICATION
Elephant shark	MODERN SPECIES	1558	ENSCMIG00000008449	CCDC125 (ENSCMIG00000008465)	ak6 (ENSCMIG00000008469)	rad17 (ENSCMIG00000008477)	marveld2b (ENSCMIG00000008484)	oclna (ENSCMIG00000008487)	gtf2h2 (ENSCMIG00000008492)	smn1 (ENSCMIG00000008498)	ENSCMIG00000008499	ENSCMIG00000008506	mccc2 (ENSCMIG00000008526)	CARTPT (ENSCMIG00000008552)	MAP1B (ENSCMIG00000008553)	mrps27 (ENSCMIG00000008562)	ptcd2 (ENSCMIG00000008568)	ENSCMIG00000008570 ##22	ZNF366 (ENSCMIG00000008573)	TNPO1 (ENSCMIG00000008580)	fcho2 (ENSCMIG00000008607)	ENSCMIG00000008663	TMEM174 (ENSCMIG00000008665)	foxd1 (ENSCMIG00000008666)	btf3 (ENSCMIG00000008667)	ENSCMIG00000008668	ankra2 (ENSCMIG00000008670)	utp15 (ENSCMIG00000008674)
Elephant shark	MODERN SPECIES	1490	CFAP161 (ENSCMIG00000004045)	ENSCMIG00000004034	STARD5 (ENSCMIG00000004029)	TMC3 (ENSCMIG00000004018)	mex3b (ENSCMIG00000004014)	EFL1 (ENSCMIG00000003968)	ENSCMIG00000003940	saxo2 (ENSCMIG00000003933)	ADAMTSL3 (ENSCMIG00000003874)	ENSCMIG00000003843	ENSCMIG00000003835	sh3gl3a (ENSCMIG00000003826)	BNC1 (ENSCMIG00000003821)	HDGFL3 (ENSCMIG00000003814)	TM6SF1 (ENSCMIG00000003783)	idh2 (ENSCMIG00000003541) ##22	ENSCMIG00000003381	sema4ba (ENSCMIG00000003350)	ENSCMIG00000003329	ENSCMIG00000003326	ENSCMIG00000003323	ENSCMIG00000003321	ENSCMIG00000003318	MCTP2 (ENSCMIG00000003148)	ENSCMIG00000003091	ARRDC4 (ENSCMIG00000003002)	lysmd4 (ENSCMIG00000002965)	mef2a (ENSCMIG00000002933)	lrrc28 (ENSCMIG00000002897)	ENSCMIG00000002875	pdia3 (ENSCMIG00000002440)
Euteleostomi	ANCESTRAL SPECIES	1007																ENSGT00390000012547.a ##22	ENSGT00940000161170
Actinopterygii	ANCESTRAL SPECIES	107					ENSGT00390000018400	ENSGT01040000240503.A.a.a	ENSGT00530000063675.a	ENSGT00940000156346	ENSGT00510000048144	ENSGT00940000156800	ENSGT00940000160227	ENSGT00940000157599	ENSGT00390000012355.B.a	ENSGT00940000165857	ENSGT00940000159833	ENSGT00390000012547.a ##22	ENSGT00940000161170	ENSGT00940000154870.D	ENSGT00940000165251	ENSGT00940000164082	ENSGT00940000164943	ENSGT01050000244841.A.a.b	ENSGT00390000009995	ENSGT00390000014273.a	ENSGT00950000182920.a	ENSGT00940000164158.B	ENSGT01080000257410.A.f	ENSGT01030000234535.F.a	ENSGT00730000111392	ENSGT00940000155888	ENSGT00950000183112.a
Neopterygii	ANCESTRAL SPECIES	30	ENSGT00390000002443	ENSGT00940000154470.b	ENSGT00390000015600.c.a	ENSGT00940000158357	ENSGT00390000016025.b	ENSGT00940000158534	ENSGT00390000018044.a	ENSGT00940000156346	ENSGT00510000048144	ENSGT00940000156800	ENSGT00940000160227	ENSGT00940000157599	ENSGT00390000012355.B.a	ENSGT00940000165857	ENSGT00940000159833	ENSGT00390000012547.a ##22	ENSGT00940000161170	ENSGT00940000154870.D	ENSGT00940000165251	ENSGT00940000164082	ENSGT00940000165481	ENSGT00940000164943	ENSGT01050000244841.A.a.b	ENSGT00390000009995	ENSGT00390000014273.a	ENSGT01060000250644	ENSGT00940000164158.B	ENSGT01080000257410.A.f	ENSGT01030000234535.F.a	ENSGT00730000111392	ENSGT00940000155888
Osteoglossocephalai	ANCESTRAL SPECIES		ENSGT00390000015600.c.a	ENSGT00940000158357	ENSGT00390000016025.b	ENSGT00940000158534.a.b	ENSGT00390000018044.a	ENSGT00940000156346.c.b	ENSGT00940000156346.d	ENSGT00940000156346.c.a	ENSGT00510000048144	ENSGT00940000156800	ENSGT00940000160227	ENSGT00940000157599.c.a	ENSGT00390000012355.B.a	ENSGT00940000165857	ENSGT00940000159833	ENSGT00390000012547.a ##22	ENSGT00940000161170.d	ENSGT00940000154870.D.a.a	ENSGT00940000165251	ENSGT01000000215232	ENSGT00940000165481	ENSGT00940000164943.a.a	ENSGT00390000014273.a	ENSGT00390000009995	ENSGT01050000244841.A.a.b	ENSGT00950000182920.a	ENSGT00940000164158.B	ENSGT01080000257410.A.f.m	ENSGT01030000234535.F.a	ENSGT00730000111392	ENSGT00940000155888
Osteoglossiformes	DUPLICATION
Osteoglossiformes	ANCESTRAL SPECIES	13	ENSGT00940000156932.b	ENSGT00940000154954.nb.a	ENSGT00390000001338	ENSGT00940000154470.b	ENSGT00390000015600.c.a	ENSGT00390000016025.b	ENSGT00940000158534.a.a.w	ENSGT00390000018044.a.a	ENSGT00940000156346.c.b	ENSGT00940000156346.d	ENSGT00510000048144	ENSGT00940000157599.c.a	ENSGT00390000012355.B.a	ENSGT00940000165857	ENSGT00940000159833	ENSGT00390000012547.a.c ##22	ENSGT00940000161170.c.j	ENSGT00940000154870.D.a.a	ENSGT00940000165251.a	ENSGT00940000164082.a.b	ENSGT00940000165481	ENSGT00940000164943.a.a	ENSGT00390000009995	ENSGT00390000014273.a	ENSGT01050000244841.A.a.b	ENSGT00950000182920.a	ENSGT00940000164158.B	ENSGT01080000257410.A.f.m	ENSGT01080000257410.A.f.l	ENSGT01030000234535.F.a	ENSGT00730000111392.b
P. kingsleyae	MODERN SPECIES	379	tmem170a (ENSPKIG00000020597)	ENSPKIG00000020614	carmil2 (ENSPKIG00000020650)	ctcf (ENSPKIG00000020697)	ripor1 (ENSPKIG00000020727)	vrk3 (ENSPKIG00000020774)	pard6a (ENSPKIG00000020849)	slc28a1 (ENSPKIG00000020873)	ENSPKIG00000020937	ENSPKIG00000021006	ENSPKIG00000021040	FRMD5 (ENSPKIG00000021052)	RASGRF1 (ENSPKIG00000021078)	ENSPKIG00000021152	tmed3 (ENSPKIG00000021163)	idh2 (ENSPKIG00000021189) ##22	ZNF710 (ENSPKIG00000021224)	sema4ba (ENSPKIG00000021243)	ENSPKIG00000021308	serf2a (ENSPKIG00000021321)	ENSPKIG00000021338	ENSPKIG00000021352	ENSPKIG00000021359	ENSPKIG00000021383	ENSPKIG00000021438	ENSPKIG00000021444
Asian bonytongue	MODERN SPECIES	2	tmem266 (ENSSFOG00015020631)	ISL2 (ENSSFOG00015020618)	scaper (ENSSFOG00015020464)	pstpip1a (ENSSFOG00015020435)	tspan3a (ENSSFOG00015020420)	si:dkey-24l11.2 (ENSSFOG00015020381)	NMB (ENSSFOG00015024512)	sec11a (ENSSFOG00015020351)	slc28a1 (ENSSFOG00015020330)	ENSSFOG00015020291	ENSSFOG00015020258	FRMD5 (ENSSFOG00015020201)	wdr76 (ENSSFOG00015020157)	RASGRF1 (ENSSFOG00015020069)	ENSSFOG00015020056	idh2 (ENSSFOG00015020007) ##22	ZNF710 (ENSSFOG00015019986)	sema4ba (ENSSFOG00015019956)	ENSSFOG00015019937	ENSSFOG00015019912	ENSSFOG00015019887	ENSSFOG00015019857	ENSSFOG00015019819	gnrhr4 (ENSSFOG00015019796)	si:dkeyp-59c12.1 (ENSSFOG00015019777)	SLCO3A1 (ENSSFOG00015019746)	st8sia2 (ENSSFOG00015019731)	rgma (ENSSFOG00015027403)	lysmd4 (ENSSFOG00015032617)	nr2f2 (ENSSFOG00015019658)	MCTP2 (ENSSFOG00015019584)
Osteoglossiformes	ANCESTRAL SPECIES	158	ENSGT00390000013422	ENSGT00940000153731.a.b.c	ENSGT01010000222360.A	ENSGT00940000156932.a	ENSGT00940000154954.nb.b	ENSGT00940000163793.A.b	ENSGT00390000002443	ENSGT00940000172895	ENSGT00940000158534.a.a.x	ENSGT00940000158534.b	ENSGT00390000018044.a.b	ENSGT00940000156346.c.a	ENSGT00940000156800	ENSGT00940000160227	ENSGT00940000157599.c.b	ENSGT00390000012547.a.d ##22	ENSGT00940000161170.c.i	ENSGT00940000154870.D.a.b	ENSGT00940000165251.b	ENSGT00940000164082.a.a	ENSGT00940000164943.a.b
P. kingsleyae	MODERN SPECIES	148	si:dkey-172h23.2 (ENSPKIG00000020113)	ENSPKIG00000020142	sv2ba (ENSPKIG00000020160)	ENSPKIG00000020187	mespab (ENSPKIG00000020197)	ANPEP (ENSPKIG00000020225)	ap3s2 (ENSPKIG00000020282)	ENSPKIG00000020299	si:dkey-12e7.1 (ENSPKIG00000020306)	anpeplb (ENSPKIG00000020321)	arpin (ENSPKIG00000020365)	ENSPKIG00000020390	ENSPKIG00000020414	si:ch211-107o10.3 (ENSPKIG00000020473)	tmed3 (ENSPKIG00000020495)	idh2 (ENSPKIG00000020516) ##22	ZNF710 (ENSPKIG00000020562)	SEMA4B (ENSPKIG00000020599)	zgc:162879 (ENSPKIG00000020661)	SERF2 (ENSPKIG00000020684)	ENSPKIG00000020702	pex11a (ENSPKIG00000020730)	ENSPKIG00000020748	ENSPKIG00000020761	si:dkeyp-59c12.1 (ENSPKIG00000000406)	slco3a1a (ENSPKIG00000000419)	ENSPKIG00000000443	ST8SIA2 (ENSPKIG00000000449)	fam174b (ENSPKIG00000000461)	chd2 (ENSPKIG00000000495)	rgma (ENSPKIG00000000558)
Asian bonytongue	MODERN SPECIES	22	tpma (ENSSFOG00015015762)	lactb (ENSSFOG00015015740)	ENSSFOG00015032961	etfa (ENSSFOG00015025689)	rcn2 (ENSSFOG00015015662)	pstpip1b (ENSSFOG00015015637)	tspan3b (ENSSFOG00015015587)	ch25hl1.1 (ENSSFOG00015015574)	kti12 (ENSSFOG00015015555)	ENSSFOG00015015548	ENSSFOG00015015530	ENSSFOG00015024761	ctsh (ENSSFOG00015015406)	RASGRF1 (ENSSFOG00015015302)	si:ch211-107o10.3 (ENSSFOG00015015266)	idh2 (ENSSFOG00015015234) ##22	ZNF710 (ENSSFOG00015015217)	ENSSFOG00015014401	ENSSFOG00015025500	myl13 (ENSSFOG00015014305) ##13	pth1r (ENSSFOG00015014280)	tmie (ENSSFOG00015014259)	ENSSFOG00015009805	ENSSFOG00015009794	ACKR2 (ENSSFOG00015009784)	CYP8B1 (ENSSFOG00015031207)	CYP8B1 (ENSSFOG00015026431)	CYP8B1 (ENSSFOG00015005627)	ENSSFOG00015028458	gjc2 (ENSSFOG00015009708)	iba57 (ENSSFOG00015026995)
Clupeocephala	ANCESTRAL SPECIES	2	ENSGT00390000002443	ENSGT00940000154470.b	ENSGT00390000015600.c.a	ENSGT00940000158357	ENSGT00390000016025.b	ENSGT00940000158534.a.b	ENSGT00390000018044.a	ENSGT00940000156346.c.b	ENSGT00940000156800	ENSGT00940000160227	ENSGT00940000157599.c.a	ENSGT00390000012355.B.a	ENSGT00940000165857.b	ENSGT00940000165857.a	ENSGT00940000159833	ENSGT00390000012547.a ##22	ENSGT00940000161170.d	ENSGT00940000154870.D.a.a	ENSGT00940000165251	ENSGT01000000215232	ENSGT00940000165481.a.a	ENSGT00940000164082.a.b	ENSGT00940000165481.b	ENSGT00940000164943.a.a	ENSGT00390000014273.a	ENSGT01050000244841.A.a.b.qb.b	ENSGT00950000182920.a	ENSGT00940000164158.B	ENSGT01080000257410.A.f.m	ENSGT01030000234535.F.a	ENSGT00730000111392
Euteleosteomorpha	DUPLICATION
Euteleosteomorpha	ANCESTRAL SPECIES																	ENSGT00390000012547.a.e ##22
Protacanthopterygii	ANCESTRAL SPECIES	45	ENSGT00940000163793.B	ENSGT00390000001338	ENSGT00940000163793.A.b	ENSGT00390000002443	ENSGT00940000172424	ENSGT00940000158357	ENSGT00390000016025.b	ENSGT00940000158534.a.b	ENSGT00390000018044.a	ENSGT00940000156346.c.b	ENSGT00940000156800	ENSGT00940000160227.g	ENSGT00940000157599.c.a	ENSGT00390000012355.B.a	ENSGT00940000165857.b	ENSGT00390000012547.a.e ##22	ENSGT00940000161170.d	ENSGT00940000154870.D.a.a	ENSGT00940000165251	ENSGT01000000215232	ENSGT00940000165481.a.a	ENSGT00940000164943.a.a	ENSGT00390000014273.a	ENSGT00940000156878.i.b.a.b	ENSGT00660000097187	ENSGT00940000156041.d	ENSGT00940000160687	ENSGT00390000005075	ENSGT00690000103052	ENSGT01020000230354.A.b	ENSGT00390000011228.b.b
Salmoninae	DUPLICATION
Salmoninae	ANCESTRAL SPECIES	71										ENSGT00940000158534.a.b.o	ENSGT00390000018044.a.f	ENSGT00940000156346.c.b.n.b	ENSGT00940000160227.g.b	ENSGT00940000157599.c.a.c	ENSGT00390000012355.B.a.f	ENSGT00390000012547.a.e.a ##22	ENSGT00940000161170.d.c	ENSGT00940000154870.D.a.a.c	ENSGT00940000165251.c	ENSGT01000000215232.a	ENSGT00940000165481.a.a	ENSGT00940000164943.a.a.r	ENSGT00390000014273.a	ENSGT00940000156878.i.b.a.b.d	ENSGT00660000097187.c	ENSGT00940000156041.d	ENSGT01100000263516.a.b.b.b.b.a.a.a.a.a.a.a.a.b	ENSGT00940000160687	ENSGT00390000005075.j	ENSGT00690000103052	ENSGT01100000263529.a.a.a.b.a.a.a.e.b
Huchen	MODERN SPECIES	1266												FRMD5 (ENSHHUG00000035907)	ENSHHUG00000035862	RASGRF1 (ENSHHUG00000035599)	ENSHHUG00000035586	idh2 (ENSHHUG00000035426) ##22	znf710a (ENSHHUG00000035418)
Salmoninae_a	ANCESTRAL SPECIES	1	ENSGT01000000215814.A	ENSGT00940000156738.c.d	ENSGT00390000013422.c.a	ENSGT00940000153731.a.b.c.b	ENSGT00390000011159.a	ENSGT01010000222360.A	ENSGT00940000156932.b.c	ENSGT00940000154954.nb.a.d	ENSGT00940000163793.A.b.j	ENSGT00940000158534.a.b.o	ENSGT00390000018044.a.f	ENSGT00940000156346.c.b.n.b	ENSGT00940000160227.g.b	ENSGT00940000157599.c.a.c	ENSGT00390000012355.B.a.f	ENSGT00390000012547.a.e.a ##22	ENSGT00940000161170.d.c	ENSGT00940000154870.D.a.a.c	ENSGT00940000165251.c	ENSGT01000000215232.a	ENSGT00940000165481.a.a	ENSGT00940000164943.a.a.r	ENSGT00390000014273.a	ENSGT00940000156878.i.b.a.b.d	ENSGT00660000097187.c	ENSGT00940000156041.d	ENSGT01100000263516.a.b.b.b.b.a.a.a.a.a.a.a.a.b	ENSGT00940000160687	ENSGT00390000005075.j	ENSGT00690000103052	ENSGT01100000263529.a.a.a.b.a.a.a.e.b
Salmo	ANCESTRAL SPECIES	9	ENSGT01000000215814.A	ENSGT00940000156738.c.d	ENSGT00940000167435	ENSGT00940000153731.a.b.c.b	ENSGT00390000011159.a	ENSGT01010000222360.A	ENSGT00940000156932.b.c	ENSGT00940000154954.nb.a.d	ENSGT00940000163793.A.b.j	ENSGT00940000158534.a.b.o	ENSGT00390000018044.a.f	ENSGT00940000156346.c.b.n.b	ENSGT00940000160227.g.b	ENSGT00940000157599.c.a.c	ENSGT00390000012355.B.a.f	ENSGT00390000012547.a.e.a ##22	ENSGT00940000161170.d.c	ENSGT00940000154870.D.a.a.c	ENSGT00940000165251.c	ENSGT01000000215232.a	ENSGT00940000165481.a.a	ENSGT00940000164943.a.a.r	ENSGT00390000014273.a	ENSGT00940000156878.i.b.a.b.d	ENSGT00660000097187.c	ENSGT00940000156041.d	ENSGT01100000263516.a.b.b.b.b.a.a.a.a.a.a.a.a.b	ENSGT00940000160687	ENSGT00390000005075.j	ENSGT00690000103052	ENSGT01100000263529.a.a.a.b.a.a.a.e.b.d
Atlantic salmon	MODERN SPECIES	7	ENSSSAG00000065118	ENSSSAG00000101914	ISL2 (ENSSSAG00000083670)	scaper (ENSSSAG00000061821)	pstpip1a (ENSSSAG00000061576)	tspan3a (ENSSSAG00000115148)	ch25hl1.1 (ENSSSAG00000094295)	ENSSSAG00000061448	ENSSSAG00000084882	ENSSSAG00000061381	ENSSSAG00000114787	ENSSSAG00000059646	ctsh (ENSSSAG00000059459)	ENSSSAG00000054331	ENSSSAG00000054253	idh2 (ENSSSAG00000052047) ##22	znf710a (ENSSSAG00000051985)	ENSSSAG00000121240	sema4ba (ENSSSAG00000051954)	ENSSSAG00000051891	ENSSSAG00000051875	ENSSSAG00000051864	pex11a (ENSSSAG00000051856)	ENSSSAG00000119246	ARF4 (ENSSSAG00000051837)	ENSSSAG00000051820	ENSSSAG00000051649	ENSSSAG00000051636	ENSSSAG00000051628	ENSSSAG00000051616	ENSSSAG00000114399
River trout	MODERN SPECIES	8	tmem266 (ENSSTUG00000048334)	ENSSTUG00000048395	isl2a (ENSSTUG00000024900)	scaper (ENSSTUG00000025028)	rcn2 (ENSSTUG00000027152)	pstpip1a (ENSSTUG00000027187)	tspan3a (ENSSTUG00000027196)	ch25hl1.1 (ENSSTUG00000027211)	ENSSTUG00000027217	ENSSTUG00000027228	ENSSTUG00000027248	FRMD5 (ENSSTUG00000027304)	ctsh (ENSSTUG00000027624)	RASGRF1 (ENSSTUG00000027866)	ENSSTUG00000028312	idh2 (ENSSTUG00000028358) ##22	znf710a (ENSSTUG00000030465)	sema4ba (ENSSTUG00000030476)	zgc:162879 (ENSSTUG00000030639)	ENSSTUG00000030652	ENSSTUG00000030682	ENSSTUG00000030689	pex11a (ENSSTUG00000030700)	ARF5 (ENSSTUG00000030706)	ENSSTUG00000030749	si:dkey-30c15.2 (ENSSTUG00000030754)	ENSSTUG00000030762	pdp2 (ENSSTUG00000030791)	ENSSTUG00000030817	si:dkey-30c15.13 (ENSSTUG00000030836)	ENSSTUG00000030845
Oncorhynchus	ANCESTRAL SPECIES	2	ENSGT01000000215814.A	ENSGT00940000156738.c.d	ENSGT00390000013422.c.a	ENSGT00940000153731.a.b.c.b	ENSGT00390000011159.a	ENSGT01010000222360.A	ENSGT00940000156932.b.c	ENSGT00940000154954.nb.a.d	ENSGT00940000163793.A.b.j	ENSGT00940000158534.a.b.o	ENSGT00390000018044.a.f	ENSGT00940000156346.c.b.n.b	ENSGT01000000221756	ENSGT00940000157599.c.a.c	ENSGT00390000012355.B.a.f	ENSGT00390000012547.a.e.a ##22	ENSGT00940000161170.d.c	ENSGT00940000154870.D.a.a.c.a.a	ENSGT00940000165251.c	ENSGT01000000215232.a	ENSGT00940000165481.a.a	ENSGT00940000164943.a.a.r	ENSGT00390000014273.a	ENSGT00940000156878.i.b.a.b.d	ENSGT00660000097187.c	ENSGT00940000156041.d	ENSGT01100000263516.a.b.b.b.b.a.a.a.a.a.a.a.a.b	ENSGT00940000160687	ENSGT00390000005075.j	ENSGT00690000103052	ENSGT01100000263529.a.a.a.b.a.a.a.e.b
Oncorhynchus_a	ANCESTRAL SPECIES	1	ENSGT01030000234542.b.a.a.b.a.a.b.b	ENSGT01000000215814.A	ENSGT00940000156738.c.d	ENSGT00390000013422.c.a	ENSGT00940000153731.a.b.c.b	ENSGT00390000011159.a	ENSGT01010000222360.A	ENSGT00940000156932.b.c	ENSGT00940000154954.nb.a.d	ENSGT00940000163793.A.b.j	ENSGT00940000158534.a.b.o	ENSGT00390000018044.a.f	ENSGT00940000156346.c.b.n.b	ENSGT00940000157599.c.a.c	ENSGT00390000012355.B.a.f	ENSGT00390000012547.a.e.a ##22	ENSGT00940000161170.d.c	ENSGT00940000154870.D.a.a.c.a.a	ENSGT00940000165251.c	ENSGT01000000215232.a	ENSGT00940000165481.a.a	ENSGT00940000164943.a.a.r	ENSGT00390000014273.a	ENSGT00940000156878.i.b.a.b.d	ENSGT00660000097187.c	ENSGT00940000156041.d	ENSGT01100000263516.a.b.b.b.b.a.a.a.a.a.a.a.a.b	ENSGT00940000160687	ENSGT00390000005075.j	ENSGT00690000103052	ENSGT01100000263529.a.a.a.b.a.a.a.e.b
Chinook salmon	DUPLICATION
Chinook salmon	MODERN SPECIES	2903														RASGRF1 (ENSOTSG00005030789)	ENSOTSG00005030786	idh2 (ENSOTSG00005029713) ##22	znf710a (ENSOTSG00005029710)	sema4ba (ENSOTSG00005029709)	zgc:162879 (ENSOTSG00005029708)	ENSOTSG00005029707	ENSOTSG00005029706	ENSOTSG00005029705	pex11a (ENSOTSG00005029704)	ENSOTSG00005029701	ENSOTSG00005029700	ENSOTSG00005029695	ENSOTSG00005029694	pdp2 (ENSOTSG00005029693)	ENSOTSG00005029692	si:dkey-30c15.13 (ENSOTSG00005029691)	ENSOTSG00005029690
Chinook salmon	MODERN SPECIES	30	ENSOTSG00005042847	tmem266 (ENSOTSG00005042851)	etfa (ENSOTSG00005042857)	isl2a (ENSOTSG00005042860)	scaper (ENSOTSG00005042894)	rcn2 (ENSOTSG00005043498)	pstpip1a (ENSOTSG00005043499)	tspan3a (ENSOTSG00005043501)	ch25hl1.1 (ENSOTSG00005043502)	ENSOTSG00005043503	ENSOTSG00005043504	ENSOTSG00005043505	FRMD5 (ENSOTSG00005043507)	RASGRF1 (ENSOTSG00005043523)	ENSOTSG00005043754	idh2 (ENSOTSG00005043762) ##22	znf710a (ENSOTSG00005044126)	sema4ba (ENSOTSG00005044128)	zgc:162879 (ENSOTSG00005044129)	ENSOTSG00005044130	ENSOTSG00005044132	ENSOTSG00005044135	pex11a (ENSOTSG00005044136)	ARF5 (ENSOTSG00005044138)	ENSOTSG00005044140	ENSOTSG00005044143	ENSOTSG00005044147	pdp2 (ENSOTSG00005044151)	ENSOTSG00005044153	si:dkey-30c15.13 (ENSOTSG00005044158)	ENSOTSG00005044160
Coho salmon	MODERN SPECIES	24	TLN2 (ENSOKIG00005013234)	TPM1 (ENSOKIG00005015496)	tmem266 (ENSOKIG00005015740)	ENSOKIG00005015823	etfa (ENSOKIG00005015847)	isl2a (ENSOKIG00005015924)	scaper (ENSOKIG00005016066)	rcn2 (ENSOKIG00005018421)	pstpip1a (ENSOKIG00005018451)	ENSOKIG00005018479	ENSOKIG00005018488	ALPK3 (ENSOKIG00005018497)	FRMD5 (ENSOKIG00005018535)	RASGRF1 (ENSOKIG00005018708)	ENSOKIG00005019045	idh2 (ENSOKIG00005019136) ##22	znf710a (ENSOKIG00005020695)	ENSOKIG00005020705	sema4ba (ENSOKIG00005020719)	zgc:162879 (ENSOKIG00005020813)	ENSOKIG00005020902	ENSOKIG00005020933	ENSOKIG00005020971	pex11a (ENSOKIG00005021001)	ARF5 (ENSOKIG00005021020)	ENSOKIG00005021081	ENSOKIG00005021086	NETO2 (ENSOKIG00005021102)	ENSOKIG00005021340	pdp2 (ENSOKIG00005021356)	ENSOKIG00005021413
Rainbow trout	MODERN SPECIES		etfa (ENSOMYG00000043585)	isl2a (ENSOMYG00000043949)	scaper (ENSOMYG00000044079)	rcn2 (ENSOMYG00000000049)	PSTPIP1 (ENSOMYG00000000087)	tspan3a (ENSOMYG00000000208)	ENSOMYG00000000220	ENSOMYG00000000240	ENSOMYG00000000257	ENSOMYG00000000274	ENSOMYG00000000315	ENSOMYG00000000456	ENSOMYG00000000534	ENSOMYG00000000703	ENSOMYG00000051170	idh2 (ENSOMYG00000001038) ##22	znf710a (ENSOMYG00000001517)	sema4ba (ENSOMYG00000001650)	zgc:162879 (ENSOMYG00000001790)	ENSOMYG00000002093	ENSOMYG00000002057	ENSOMYG00000002131	pex11a (ENSOMYG00000002140)	ENSOMYG00000002174	ENSOMYG00000002191	ENSOMYG00000002337	ENSOMYG00000002388	ENSOMYG00000002439	ENSOMYG00000002460	ENSOMYG00000002505	ENSOMYG00000002601
Salmoninae	ANCESTRAL SPECIES	18	ENSGT00940000163793.B	ENSGT00390000001338	ENSGT00940000163793.A.b.i	ENSGT00390000002443	ENSGT00940000172424	ENSGT00940000158357	ENSGT00390000016025.b	ENSGT00940000158534.a.b.p	ENSGT00390000018044.a.e	ENSGT00940000156346.c.b.n.a	ENSGT00940000156800	ENSGT00940000160227.g.a	ENSGT00940000157599.c.a.d	ENSGT00390000012355.B.a.e	ENSGT00940000165857.b	ENSGT00390000012547.a.e.b ##22	ENSGT00940000161170.d.d	ENSGT00940000154870.D.a.a.d	ENSGT00940000165251.d	ENSGT01000000215232.b	ENSGT00940000165481.a.b	ENSGT00940000164943.a.a.q	ENSGT00990000210963	ENSGT00940000156878.i.b.a.b.c	ENSGT00660000097187.d
Huchen	MODERN SPECIES	309	tspan3a (ENSHHUG00000028201)	ch25hl1.2 (ENSHHUG00000028222)	si:dkey-24l11.2 (ENSHHUG00000028231)	ch25hl1.1 (ENSHHUG00000028239)	kti12 (ENSHHUG00000028245)	ENSHHUG00000028298	slc28a1 (ENSHHUG00000028311)	ENSHHUG00000028372	ENSHHUG00000028377	FRMD5 (ENSHHUG00000028387)	BLM (ENSHHUG00000028406)	ctsh (ENSHHUG00000028490)	RASGRF1 (ENSHHUG00000028696)	ENSHHUG00000028716	ENSHHUG00000028719	idh2 (ENSHHUG00000028729) ##22	znf710a (ENSHHUG00000029036)	ENSHHUG00000029042	sema4ba (ENSHHUG00000029048)	zgc:162879 (ENSHHUG00000029128)	ENSHHUG00000029133	ENSHHUG00000029143	ENSHHUG00000029155	ENSHHUG00000029165	ARF5 (ENSHHUG00000029170)	ENSHHUG00000029276	ENSHHUG00000029278
Salmoninae_a	ANCESTRAL SPECIES	13	ENSGT00940000163793.B	ENSGT00390000001338	ENSGT00940000163793.A.b.i	ENSGT00390000002443	ENSGT00940000172424	ENSGT00940000158357	ENSGT00390000016025.b	ENSGT00940000158534.a.b.p	ENSGT00390000018044.a.e	ENSGT00940000156346.c.b.n.a	ENSGT00940000156800	ENSGT00940000160227.g.a	ENSGT00940000157599.c.a.d	ENSGT00390000012355.B.a.e	ENSGT00940000165857.b	ENSGT00390000012547.a.e.b ##22	ENSGT00940000161170.d.d	ENSGT00940000154870.D.a.a.d	ENSGT00940000165251.d	ENSGT01000000215232.b	ENSGT00940000165481.a.b	ENSGT00940000164943.a.a.q	ENSGT00990000210963	ENSGT00940000156878.i.b.a.b.c	ENSGT00660000097187.d	ENSGT00390000005075.i	ENSGT01100000263516.a.b.b.b.b.a.a.a.a.a.b.d.a	ENSGT01020000230354.A.b.n	ENSGT00390000011228.b.b.m	ENSGT00940000154983.c.a.d	ENSGT01030000234595.B.c.b.k.b
Oncorhynchus	ANCESTRAL SPECIES	10	ENSGT00390000001338	ENSGT00940000163793.A.b.i	ENSGT00390000002443	ENSGT00940000172424	ENSGT00940000158357	ENSGT00390000016025.b.d	ENSGT00390000016025.b.c	ENSGT00940000158534.a.b.p	ENSGT00390000018044.a.e	ENSGT00940000156346.c.b.n.a	ENSGT00940000156800.c.b	ENSGT00940000160227.g.a	ENSGT00940000157599.c.a.d	ENSGT00390000012355.B.a.e	ENSGT00940000165857.b	ENSGT00390000012547.a.e.b ##22	ENSGT00940000161170.d.d	ENSGT00940000154870.D.a.a.d	ENSGT00940000165251.d	ENSGT01000000215232.b	ENSGT00940000165481.a.b	ENSGT00940000164943.a.a.q	ENSGT00990000210963	ENSGT00940000156878.i.b.a.b.c	ENSGT00660000097187.d	ENSGT00390000005075.i	ENSGT01100000263516.a.b.b.b.b.a.a.a.a.a.b.d.a	ENSGT01020000230354.A.b.n	ENSGT00390000011228.b.b.m	ENSGT00940000154983.c.a.d	ENSGT01030000234595.B.c.b.k.b
Oncorhynchus_a	ANCESTRAL SPECIES	5	ENSGT00390000001338	ENSGT00940000163793.A.b.i	ENSGT00390000002443	ENSGT00940000172424	ENSGT00940000158357	ENSGT00390000016025.b.d	ENSGT00390000016025.b.c	ENSGT00940000158534.a.b.p	ENSGT00390000018044.a.e	ENSGT00940000156346.c.b.n.a	ENSGT00940000156800.c.b	ENSGT00940000160227.g.a	ENSGT00940000157599.c.a.d	ENSGT00390000012355.B.a.e	ENSGT00940000165857.b	ENSGT00390000012547.a.e.b ##22	ENSGT00940000161170.d.d	ENSGT00940000154870.D.a.a.d	ENSGT00940000165251.d	ENSGT01000000215232.b	ENSGT00940000165481.a.b	ENSGT00940000164943.a.a.q	ENSGT00940000156878.i.b.a.b.c	ENSGT00660000097187.d	ENSGT00390000005075.i	ENSGT01100000263516.a.b.b.b.b.a.a.a.a.a.b.d.a	ENSGT01020000230354.A.b.n	ENSGT00390000011228.b.b.m	ENSGT00940000154983.d	ENSGT01030000234595.B.c.b.k.b	ENSGT00940000156681.m
Chinook salmon	MODERN SPECIES	10	tspan3a (ENSOTSG00005022720)	si:dkey-24l11.2 (ENSOTSG00005022723)	ch25hl1.1 (ENSOTSG00005022724)	kti12 (ENSOTSG00005022725)	ENSOTSG00005022726	znf592 (ENSOTSG00005022727)	slc28a1 (ENSOTSG00005022731)	ENSOTSG00005022970	ENSOTSG00005022976	FRMD5 (ENSOTSG00005022978)	BLM (ENSOTSG00005023122)	ctsh (ENSOTSG00005023130)	RASGRF1 (ENSOTSG00005023512)	ENSOTSG00005023780	ENSOTSG00005023782	idh2 (ENSOTSG00005023786) ##22	znf710a (ENSOTSG00005024996)	sema4ba (ENSOTSG00005024997)	zgc:162879 (ENSOTSG00005025000)	ENSOTSG00005025001	ENSOTSG00005025002	ENSOTSG00005025003	ARF5 (ENSOTSG00005025005)	ENSOTSG00005025006	ENSOTSG00005025008	ENSOTSG00005025011	frmd4a (ENSOTSG00005025016)	fam107b (ENSOTSG00005025026)	ENSOTSG00005025028	grm3 (ENSOTSG00005025029)	sema3d (ENSOTSG00005025043)
Coho salmon	MODERN SPECIES	14	ch25hl1.2 (ENSOKIG00005006160)	si:dkey-24l11.2 (ENSOKIG00005006183)	ch25hl1.1 (ENSOKIG00005006196)	kti12 (ENSOKIG00005006237)	ZNF592 (ENSOKIG00005006329)	ENSOKIG00005006371	slc28a1 (ENSOKIG00005006601)	ENSOKIG00005006682	ENSOKIG00005006700	FRMD5 (ENSOKIG00005006725)	BLM (ENSOKIG00005006801)	ctsh (ENSOKIG00005007162)	RASGRF1 (ENSOKIG00005007604)	ENSOKIG00005009121	ENSOKIG00005009132	idh2 (ENSOKIG00005009211) ##22	znf710a (ENSOKIG00005010618)	sema4ba (ENSOKIG00005010633)	zgc:162879 (ENSOKIG00005010662)	ENSOKIG00005010679	ENSOKIG00005010687	ENSOKIG00005010695	ARF5 (ENSOKIG00005010708)	ENSOKIG00005010745	ENSOKIG00005010754	ENSOKIG00005010779	ENSOKIG00005010784	frmd4a (ENSOKIG00005010794)	fam107b (ENSOKIG00005010869)	grm3 (ENSOKIG00005010885)	sema3d (ENSOKIG00005010992)
Rainbow trout	MODERN SPECIES	11	ch25hl1.1 (ENSOMYG00000030418)	ENSOMYG00000073899	ENSOMYG00000030468	ENSOMYG00000030488	ENSOMYG00000068181	ENSOMYG00000030545	ENSOMYG00000030697	ENSOMYG00000030776	ENSOMYG00000030803	ENSOMYG00000030813	ENSOMYG00000030943	ctsh (ENSOMYG00000031393)	ENSOMYG00000031764	ENSOMYG00000031894	ENSOMYG00000032090	idh2 (ENSOMYG00000032833) ##22	ENSOMYG00000075276	znf710a (ENSOMYG00000032913)	sema4ba (ENSOMYG00000020227)	ENSOMYG00000067756	zgc:162879 (ENSOMYG00000020241)	SERF2 (ENSOMYG00000073116)	ENSOMYG00000020272	ENSOMYG00000020279	ENSOMYG00000020287	ENSOMYG00000020314	ENSOMYG00000020342	ENSOMYG00000050337	ENSOMYG00000052922	ENSOMYG00000077852	ENSOMYG00000020362
Salmo	ANCESTRAL SPECIES	36	ENSGT00940000154954.nb.a.c	ENSGT00390000001338	ENSGT00940000163793.A.b.i	ENSGT00390000002443	ENSGT00940000172424	ENSGT00940000158357	ENSGT00390000016025.b	ENSGT00940000158534.a.b.p	ENSGT00390000018044.a.e	ENSGT00940000156346.c.b.n.a	ENSGT00940000156800	ENSGT00940000160227.g.a	ENSGT00940000157599.c.a.d	ENSGT00390000012355.B.a.e	ENSGT00940000165857.b	ENSGT00390000012547.a.e.b ##22	ENSGT00940000161170.d.d	ENSGT00940000154870.D.a.a.d	ENSGT00940000165251.d	ENSGT01000000215232.b	ENSGT00940000165481.a.b	ENSGT00940000164943.a.a.q	ENSGT00990000210963	ENSGT00940000156878.i.b.a.b.c	ENSGT00660000097187.d	ENSGT01090000260029.a.a.a.a.b.b.a.b	ENSGT00390000005075.i	ENSGT01100000263516.a.b.b.b.b.a.a.a.a.a.b.d.a	ENSGT01020000230354.A.b.n	ENSGT00390000011228.b.b.m	ENSGT00940000154983.c.a.d
Atlantic salmon	MODERN SPECIES	1	pstpip1a (ENSSSAG00000077104)	TSPAN3 (ENSSSAG00000091334)	si:dkey-24l11.2 (ENSSSAG00000077120)	ENSSSAG00000077144	ENSSSAG00000087417	znf592 (ENSSSAG00000077156)	ENSSSAG00000077190	ENSSSAG00000077702	ENSSSAG00000107272	ENSSSAG00000077765	blm (ENSSSAG00000078058)	ctsh (ENSSSAG00000078096)	ENSSSAG00000078251	ENSSSAG00000088323	ENSSSAG00000078577	idh2 (ENSSSAG00000078593) ##22	zn710 (ENSSSAG00000078644)	sema4ba (ENSSSAG00000078654)	zgc:162879 (ENSSSAG00000078723)	ENSSSAG00000078747	ENSSSAG00000078749	ENSSSAG00000078757	ARF4 (ENSSSAG00000078762)	ENSSSAG00000118803	ENSSSAG00000097315	ENSSSAG00000081800	ENSSSAG00000078780	ENSSSAG00000082441	ENSSSAG00000078802	ENSSSAG00000090509	ENSSSAG00000105676
River trout	MODERN SPECIES	37	tspan3a (ENSSTUG00000038628)	si:dkey-24l11.2 (ENSSTUG00000038561)	ch25hl1.1 (ENSSTUG00000038550)	kti12 (ENSSTUG00000038437)	ENSSTUG00000038422	znf592 (ENSSTUG00000038392)	slc28a1 (ENSSTUG00000038309)	ALPK3 (ENSSTUG00000038277)	ENSSTUG00000038246	FRMD5 (ENSSTUG00000038194)	BLM (ENSSTUG00000037746)	ctsh (ENSSTUG00000037466)	RASGRF1 (ENSSTUG00000037263)	ENSSTUG00000037236	ENSSTUG00000037223	idh2 (ENSSTUG00000036862) ##22	znf710a (ENSSTUG00000036832)	sema4ba (ENSSTUG00000036820)	zgc:162879 (ENSSTUG00000036787)	ENSSTUG00000036772	ENSSTUG00000036764	ENSSTUG00000036746	ENSSTUG00000036674	ARF5 (ENSSTUG00000036647)	si:dkey-30c15.2 (ENSSTUG00000036638)	ENSSTUG00000036625	ENSSTUG00000036543	ENSSTUG00000036505	frmd4a (ENSSTUG00000036262)	fam107b (ENSSTUG00000036229)	elapor2a (ENSSTUG00000036147)
Northern pike	MODERN SPECIES	18	scaper (ENSELUG00000018590)	rcn2 (ENSELUG00000018689)	pstpip1a (ENSELUG00000001609)	si:dkey-24l11.2 (ENSELUG00000018751)	kti12 (ENSELUG00000018791)	ENSELUG00000018815	slc28a1 (ENSELUG00000018851)	ENSELUG00000026633	ENSELUG00000018905	ENSELUG00000026622	FRMD5 (ENSELUG00000019032)	ENSELUG00000019098	ctsh (ENSELUG00000019169)	RASGRF1 (ENSELUG00000019238)	ENSELUG00000019254	idh2 (ENSELUG00000019359) ##22	znf710a (ENSELUG00000000824)	sema4ba (ENSELUG00000000831)	zgc:162879 (ENSELUG00000019483)	ENSELUG00000019503	ENSELUG00000001284	ENSELUG00000019537	pex11a (ENSELUG00000000859)	ENSELUG00000019582	ENSELUG00000019623	ENSELUG00000019654	pdp2 (ENSELUG00000019667)	ENSELUG00000019779	si:dkey-30c15.13 (ENSELUG00000019837)	frmd4a (ENSELUG00000019955)	fam107b (ENSELUG00000019987)
Euteleosteomorpha	DUPLICATION
Euteleosteomorpha	ANCESTRAL SPECIES	3	ENSGT00940000167435	ENSGT01000000217199	ENSGT00940000153731.a.b.d	ENSGT00940000156932.a	ENSGT00940000154954.nb.b	ENSGT00940000154470.b	ENSGT00390000015600.c.a	ENSGT00940000158534.a.a	ENSGT00940000156346.c.a	ENSGT00940000156346.d	ENSGT00510000048144	ENSGT00940000160227.h	ENSGT00940000157599.c.b	ENSGT00940000165857.a	ENSGT00940000159833	ENSGT00390000012547.a.f.a ##22	ENSGT00940000161170.c	ENSGT00940000154870.D.a.b	ENSGT00390000009995	ENSGT01050000244841.A.a.b.qb.a	ENSGT01080000257410.A.f.l	ENSGT00940000157540.B	ENSGT00940000156291.e	ENSGT00940000156205.g	ENSGT00940000157771	ENSGT00940000156682.e.a	ENSGT00970000193421.C.b	ENSGT00940000154876.a.a.a.a	ENSGT00940000154876.a.a.a.b	ENSGT00530000063712.a.a.o.a	ENSGT00530000063712.a.a.o.b
Acanthomorphata	ANCESTRAL SPECIES	122	ENSGT00390000013049	ENSGT00940000156738.d	ENSGT00940000153731.a.b.d	ENSGT00940000156932.a	ENSGT00940000154954.nb.b	ENSGT00940000154470.b	ENSGT00390000015600.c.a	ENSGT00940000158534.a.a	ENSGT00940000166058	ENSGT00940000156346.c.a	ENSGT00510000048144	ENSGT00940000160227.h	ENSGT00940000157599.c.b	ENSGT00940000165857.a	ENSGT00940000159833	ENSGT00390000012547.a.f.a ##22	ENSGT00940000161170.c	ENSGT00940000154870.D.a.b	ENSGT00940000164082.b	ENSGT00940000164943.a.b	ENSGT00390000009995	ENSGT01050000244841.A.a.b.qb.a.a
Euacanthomorphacea	ANCESTRAL SPECIES	29	ENSGT00390000013049	ENSGT00940000156738.d	ENSGT00940000153731.a.b.d	ENSGT00940000156932.a	ENSGT00940000154954.nb.b	ENSGT00940000154470.b	ENSGT00390000015600.c.a	ENSGT00940000158534.a.a	ENSGT00940000166058	ENSGT00940000156346.c.a	ENSGT00510000048144	ENSGT00940000160227.h	ENSGT00940000157599.c.b	ENSGT00940000165857.a	ENSGT00940000159833	ENSGT00390000012547.a.f.a ##22	ENSGT00940000161170.c	ENSGT00940000154870.D.a.b	ENSGT00940000164082.b	ENSGT00940000164943.a.b	ENSGT00390000009995	ENSGT01050000244841.A.a.b.qb.a.a	ENSGT00940000157722	ENSGT00940000157091	ENSGT01090000260003.a.b.b.a.a.a.b.a	ENSGT01000000214413.a.v	ENSGT00940000155347.a.b	ENSGT00940000154555.e.a	ENSGT00940000157573	ENSGT00950000183103.c	ENSGT00940000155174.f
Percomorphaceae	ANCESTRAL SPECIES	27	ENSGT00390000013049	ENSGT00940000156738.d	ENSGT00940000153731.a.b.d	ENSGT00940000156932.a	ENSGT00940000154954.nb.b	ENSGT00940000154470.b	ENSGT00390000015600.c.a	ENSGT00940000158534.a.a	ENSGT00940000166058	ENSGT00940000156346.c.a	ENSGT00510000048144	ENSGT00940000160227.h	ENSGT00940000157599.c.b	ENSGT00940000165857.a	ENSGT00940000159833	ENSGT00390000012547.a.f.a ##22	ENSGT00940000161170.c	ENSGT00940000154870.D.a.b	ENSGT00940000164082.b	ENSGT00940000164943.a.b	ENSGT00390000009995	ENSGT01050000244841.A.a.b.qb.a.a	ENSGT00940000157722	ENSGT00940000157091	ENSGT01090000260003.a.b.b.a.a.a.b.a	ENSGT01000000214413.a.v	ENSGT00940000155347.a.b	ENSGT00940000154555.e.a	ENSGT00940000157573	ENSGT00950000183103.c	ENSGT00940000155174.f
Percomorphaceae_B	ANCESTRAL SPECIES	12	ENSGT00940000156738.d	ENSGT00940000153731.a.b.d	ENSGT00940000156932.a	ENSGT00940000154954.nb.b	ENSGT00940000154470.b	ENSGT00390000015600.c.a	ENSGT00940000158534.a.a	ENSGT00940000166058	ENSGT00940000156346.c.a	ENSGT00940000156346.d	ENSGT00510000048144	ENSGT00940000160227.h	ENSGT00940000157599.c.b	ENSGT00940000165857.a	ENSGT00940000159833	ENSGT00390000012547.a.f.a ##22	ENSGT00940000161170.c	ENSGT00940000154870.D.a.b	ENSGT00940000164082.b	ENSGT00940000164943.a.b	ENSGT00390000009995	ENSGT01050000244841.A.a.b.qb.a.a	ENSGT00940000157722	ENSGT00940000157091	ENSGT01090000260003.a.b.b.a.a.a.b.a	ENSGT01000000214413.a.v	ENSGT00940000155347.a.b	ENSGT00940000154555.e.a	ENSGT00940000157573	ENSGT00950000183103.c	ENSGT00940000155174.f
Ovalentaria	ANCESTRAL SPECIES	17	ENSGT00940000156738.d	ENSGT00940000153731.a.b.d	ENSGT00940000156932.a	ENSGT00940000154954.nb.b	ENSGT00940000154470.b	ENSGT00390000015600.c.a	ENSGT00940000158534.a.a	ENSGT00940000166058	ENSGT00940000156346.c.a	ENSGT00940000156346.d	ENSGT00510000048144	ENSGT00940000160227.h	ENSGT00940000157599.c.b	ENSGT00940000165857.a	ENSGT00940000159833	ENSGT00390000012547.a.f.a ##22	ENSGT00940000161170.c	ENSGT00940000154870.D.a.b	ENSGT00940000164082.b	ENSGT00940000164943.a.b	ENSGT00390000009995	ENSGT01050000244841.A.a.b.qb.a.a	ENSGT00940000157722	ENSGT00940000157091	ENSGT01090000260003.a.b.b.a.a.a.b.a	ENSGT01000000214413.a.v	ENSGT00940000155347.a.b	ENSGT00940000154555.e.a	ENSGT00940000157573	ENSGT00950000183103.c	ENSGT00940000155174.f
Ovalentaria_B	ANCESTRAL SPECIES	10	ENSGT00940000156738.d	ENSGT00940000153731.a.b.d	ENSGT00940000156932.a	ENSGT00940000154954.nb.b	ENSGT00940000154470.b	ENSGT00390000015600.c.a	ENSGT00940000158534.a.a	ENSGT00940000166058	ENSGT00940000156346.c.a	ENSGT00940000156346.d	ENSGT00510000048144	ENSGT00940000160227.h	ENSGT00940000157599.c.b	ENSGT00940000165857.a	ENSGT00940000159833	ENSGT00390000012547.a.f.a ##22	ENSGT00940000161170.c	ENSGT00940000154870.D.a.b	ENSGT00940000164082.b	ENSGT00940000164943.a.b	ENSGT00390000009995	ENSGT01050000244841.A.a.b.qb.a.a	ENSGT00940000157722	ENSGT00940000157091.t	ENSGT01090000260003.a.b.b.a.a.a.b.a	ENSGT01000000214413.a.v	ENSGT00940000155347.a.b	ENSGT00940000154555.e.a	ENSGT00940000157573	ENSGT00950000183103.c	ENSGT00940000155174.f
Pomacentridae	ANCESTRAL SPECIES	77	ENSGT00940000156738.d	ENSGT00940000153731.a.b.d	ENSGT00940000156932.a	ENSGT00940000154954.nb.b	ENSGT00940000154470.b	ENSGT00390000015600.c.a	ENSGT00940000158534.a.a	ENSGT00940000166058	ENSGT00940000156346.c.a	ENSGT00510000048144	ENSGT00940000160227.h	ENSGT00940000157599.c.b	ENSGT00940000165857.a.h.a	ENSGT00940000165857.a.h.b	ENSGT00940000159833	ENSGT00390000012547.a.f.a ##22	ENSGT00940000161170.c	ENSGT00940000154870.D.a.b	ENSGT00940000164082.b	ENSGT00940000164943.a.b	ENSGT00390000009995	ENSGT01050000244841.A.a.b.qb.a.a	ENSGT00940000157722	ENSGT00940000157091.t	ENSGT01090000260003.a.b.b.a.a.a.b.a	ENSGT01000000214413.a.v	ENSGT00940000155347.a.b	ENSGT00940000154555.e.a	ENSGT00940000157573	ENSGT00950000183103.c	ENSGT00940000155174.f
Pomacentridae_A	ANCESTRAL SPECIES	75	ENSGT00940000156738.d	ENSGT00940000153731.a.b.d	ENSGT00940000156932.a	ENSGT00940000154954.nb.b	ENSGT00940000154470.b	ENSGT00390000015600.c.a	ENSGT00940000158534.a.a	ENSGT00940000166058	ENSGT00940000156346.c.a	ENSGT00510000048144	ENSGT00940000160227.h	ENSGT00940000157599.c.b	ENSGT00940000165857.a.h.a	ENSGT00940000165857.a.h.b	ENSGT00940000159833	ENSGT00390000012547.a.f.a ##22	ENSGT00940000161170.c	ENSGT00940000154870.D.a.b	ENSGT00940000164082.b	ENSGT00940000164943.a.b	ENSGT00390000009995	ENSGT01050000244841.A.a.b.qb.a.a	ENSGT00940000157722	ENSGT00940000157091.t	ENSGT01090000260003.a.b.b.a.a.a.b.a	ENSGT01000000214413.a.v	ENSGT00940000155347.a.b	ENSGT00940000154555.e.a	ENSGT00940000157573	ENSGT00950000183103.c	ENSGT00940000155174.f
Amphiprion	ANCESTRAL SPECIES	39	ENSGT00940000153731.a.b.d	ENSGT00940000156932.a	ENSGT00940000154954.nb.b	ENSGT00940000154470.b	ENSGT00390000015600.c.a	ENSGT00940000158534.a.a	ENSGT00940000166058	ENSGT00940000156346.c.a	ENSGT00510000048144	ENSGT00940000160227.h	ENSGT00940000157599.c.b	ENSGT00940000165857.a.h.a.a	ENSGT00940000165857.a.h.a.b	ENSGT00940000165857.a.h.b	ENSGT00940000159833	ENSGT00390000012547.a.f.a ##22	ENSGT00940000161170.c	ENSGT00940000154870.D.a.b	ENSGT00940000164082.b	ENSGT00940000164943.a.b	ENSGT01050000244841.A.a.b.qb.a.a	ENSGT00940000157722	ENSGT00940000157091.t	ENSGT01090000260003.a.b.b.a.a.a.b.a	ENSGT01000000214413.a.v	ENSGT00940000155347.a.b	ENSGT00940000154555.e.a	ENSGT00940000157573	ENSGT00950000183103.c	ENSGT00940000155174.f
Clown anemonefish	MODERN SPECIES	3248	ISL2 (ENSAOCG00000006156)	pstpip1b (ENSAOCG00000006180)	tspan3b (ENSAOCG00000006216)	ENSAOCG00000006228	sec11a (ENSAOCG00000006256)	ENSAOCG00000000296	cry5 (ENSAOCG00000006288)	FRMD5 (ENSAOCG00000006336)	wdr76 (ENSAOCG00000006363)	ctsh (ENSAOCG00000006613)	RASGRF1 (ENSAOCG00000000339)	si:ch211-107o10.3 (ENSAOCG00000006808)	si:ch211-107o10.3 (ENSAOCG00000006815)	si:ch211-107o10.3 (ENSAOCG00000006843)	tmed3 (ENSAOCG00000006858)	idh2 (ENSAOCG00000000357) ##22	ZNF710 (ENSAOCG00000006934)	SEMA4B (ENSAOCG00000007012)	SERF2 (ENSAOCG00000007035)
Orange clownfish	MODERN SPECIES		ISL2 (ENSAPEG00000001823)	pstpip1b (ENSAPEG00000001813)	tspan3b (ENSAPEG00000001781)	ENSAPEG00000001766	sec11a (ENSAPEG00000001732)	ENSAPEG00000001725	cry5 (ENSAPEG00000001706)	FRMD5 (ENSAPEG00000001650)	wdr76 (ENSAPEG00000001629)	ctsh (ENSAPEG00000001274)	RASGRF1 (ENSAPEG00000001152)	si:ch211-107o10.3 (ENSAPEG00000001122)	ENSAPEG00000001080	si:ch211-107o10.3 (ENSAPEG00000001069)	tmed3 (ENSAPEG00000001060)	idh2 (ENSAPEG00000001016) ##22	ZNF710 (ENSAPEG00000000979)	SEMA4B (ENSAPEG00000000957)	SERF2 (ENSAPEG00000000950)	ENSAPEG00000000933	gnrhr2 (ENSAPEG00000000902)	SPPL2A (ENSAPEG00000000833)	trpm7 (ENSAPEG00000000737)	bcl2l10 (ENSAPEG00000000719)	gnb5b (ENSAPEG00000000676)	MYO5A (ENSAPEG00000000564)	arpp19b (ENSAPEG00000000557)	atosa (ENSAPEG00000000549)	onecut1 (ENSAPEG00000000531)	UNC13C (ENSAPEG00000000402)	pepd (ENSAPEG00000000291)
Spiny chromis	MODERN SPECIES	372									FRMD5 (ENSAPOG00000020793)	wdr76 (ENSAPOG00000020810)	ctsh (ENSAPOG00000021151)	RASGRF1 (ENSAPOG00000021288)	si:ch211-107o10.3 (ENSAPOG00000021333)	si:ch211-107o10.3 (ENSAPOG00000021411)	tmed3 (ENSAPOG00000021427)	idh2 (ENSAPOG00000021462) ##22	ZNF710 (ENSAPOG00000021512)	SEMA4B (ENSAPOG00000021571)	serf2b (ENSAPOG00000021588)	ENSAPOG00000021603	ENSAPOG00000021631	ENSAPOG00000021644	gnrhr2 (ENSAPOG00000021649)	SPPL2A (ENSAPOG00000021678)	trpm7 (ENSAPOG00000021801)	bcl2l10 (ENSAPOG00000021816)	gnb5b (ENSAPOG00000021862)	MYO5A (ENSAPOG00000021978)	arpp19b (ENSAPOG00000022002)	atosa (ENSAPOG00000022022)	onecut1 (ENSAPOG00000022034)
Bicolor damselfish	MODERN SPECIES	2495													si:ch211-107o10.3 (ENSSPAG00000014581)	si:ch211-107o10.3 (ENSSPAG00000014560)	tmed3 (ENSSPAG00000014547)	idh2 (ENSSPAG00000014511) ##22	ZNF710 (ENSSPAG00000014474)
Cichlidae	ANCESTRAL SPECIES	11	ENSGT00940000156738.d	ENSGT00940000153731.a.b.d	ENSGT00940000156932.a	ENSGT00940000154954.nb.b	ENSGT00940000154470.b	ENSGT00390000015600.c.a	ENSGT00940000158534.a.a	ENSGT00940000166058	ENSGT00940000156346.c.a	ENSGT00940000156346.d	ENSGT00510000048144	ENSGT00940000160227.h	ENSGT00940000157599.c.b	ENSGT00940000165857.a	ENSGT00940000159833	ENSGT00390000012547.a.f.a ##22	ENSGT00940000161170.c	ENSGT00940000154870.D.a.b	ENSGT00940000164082.b	ENSGT00940000164943.a.b	ENSGT00390000009995	ENSGT01050000244841.A.a.b.qb.a.a	ENSGT00940000157722	ENSGT00940000157091.t	ENSGT01090000260003.a.b.b.a.a.a.b.a	ENSGT01000000214413.a.v	ENSGT00940000155347.a.b	ENSGT00940000154555.e.a	ENSGT00940000157573	ENSGT00950000183103.c	ENSGT00940000155174.f
Pseudocrenilabrinae	ANCESTRAL SPECIES	13	ENSGT00940000156738.d	ENSGT00940000153731.a.b.d	ENSGT00940000156932.a	ENSGT00940000154954.nb.b	ENSGT00940000154470.b	ENSGT00390000015600.c.a	ENSGT00940000158534.a.a	ENSGT00940000166058	ENSGT00940000156346.c.a	ENSGT00940000156346.d	ENSGT00510000048144	ENSGT00940000160227.h	ENSGT00940000157599.c.b	ENSGT00940000165857.a	ENSGT00940000159833	ENSGT00390000012547.a.f.a ##22	ENSGT00940000161170.c	ENSGT00940000154870.D.a.b	ENSGT00940000164082.b	ENSGT00940000164943.a.b	ENSGT00390000009995	ENSGT01050000244841.A.a.b.qb.a.a	ENSGT00940000157722	ENSGT00940000157091.t	ENSGT01090000260003.a.b.b.a.a.a.b.a	ENSGT01000000214413.a.v	ENSGT00940000155347.a.b	ENSGT00940000154555.e.a	ENSGT00940000157573	ENSGT00950000183103.c	ENSGT00940000155174.f
Pseudocrenilabrinae_A	ANCESTRAL SPECIES	13	ENSGT00940000156738.d	ENSGT00940000153731.a.b.d	ENSGT00940000156932.a	ENSGT00940000154954.nb.b	ENSGT00940000154470.b	ENSGT00390000015600.c.a	ENSGT00940000158534.a.a	ENSGT00940000166058	ENSGT00940000156346.c.a	ENSGT00940000156346.d	ENSGT00510000048144	ENSGT00940000160227.h	ENSGT00940000157599.c.b	ENSGT00940000165857.a	ENSGT00940000159833	ENSGT00390000012547.a.f.a ##22	ENSGT00940000161170.c	ENSGT00940000154870.D.a.b	ENSGT00940000164082.b	ENSGT00940000164943.a.b	ENSGT00390000009995	ENSGT01050000244841.A.a.b.qb.a.a	ENSGT00940000157722	ENSGT00940000157091.t	ENSGT01090000260003.a.b.b.a.a.a.b.a	ENSGT01000000214413.a.v	ENSGT00940000155347.a.b	ENSGT00940000154555.e.a	ENSGT00940000157573	ENSGT00950000183103.c	ENSGT00940000155174.f
Haplochromini	ANCESTRAL SPECIES	11	ENSGT00940000156738.d	ENSGT00940000153731.a.b.d	ENSGT00940000156932.a	ENSGT00940000154954.nb.b	ENSGT00940000172895	ENSGT00390000015600.c.a	ENSGT00940000158534.a.a	ENSGT00940000166058	ENSGT00940000156346.c.a	ENSGT00940000156346.d	ENSGT00510000048144	ENSGT00940000160227.h	ENSGT00940000157599.c.b	ENSGT00940000165857.a	ENSGT00940000159833	ENSGT00390000012547.a.f.a ##22	ENSGT00940000161170.c	ENSGT00940000154870.D.a.b	ENSGT00940000164082.b	ENSGT00940000164943.a.b	ENSGT00390000009995	ENSGT01050000244841.A.a.b.qb.a.a	ENSGT00940000157722	ENSGT00940000157091.t	ENSGT01090000260003.a.b.b.a.a.a.b.a	ENSGT01000000214413.a.v	ENSGT00940000155347.a.b	ENSGT00940000154555.e.a	ENSGT00940000157573	ENSGT00950000183103.c	ENSGT00940000155174.f
Haplochromini_A	ANCESTRAL SPECIES	10	ENSGT00940000156738.d	ENSGT00940000153731.a.b.d	ENSGT00940000156932.a	ENSGT00940000154954.nb.b	ENSGT00940000172895	ENSGT00390000015600.c.a	ENSGT00940000158534.a.a	ENSGT00940000166058	ENSGT00940000156346.c.a	ENSGT00940000156346.d	ENSGT00510000048144	ENSGT00940000160227.h	ENSGT00940000157599.c.b	ENSGT00940000165857.a	ENSGT00940000159833	ENSGT00390000012547.a.f.a ##22	ENSGT00940000161170.c	ENSGT00940000154870.D.a.b	ENSGT00940000164082.b	ENSGT00940000164943.a.b	ENSGT00390000009995	ENSGT01050000244841.A.a.b.qb.a.a	ENSGT00940000157722	ENSGT00940000157091.t	ENSGT01090000260003.a.b.b.a.a.a.b.a	ENSGT01000000214413.a.v	ENSGT00940000155347.a.b	ENSGT00940000154555.e.a	ENSGT00940000157573	ENSGT00950000183103.c	ENSGT00940000155174.f
Haplochromini_B	ANCESTRAL SPECIES	3	ENSGT00390000013049	ENSGT00940000156738.d	ENSGT00940000153731.a.b.d	ENSGT00940000156932.a	ENSGT00940000154954.nb.b	ENSGT00940000172895	ENSGT00390000015600.c.a	ENSGT00940000158534.a.a	ENSGT00940000166058	ENSGT00940000156346.c.a	ENSGT00510000048144	ENSGT00940000160227.h	ENSGT00940000157599.c.b	ENSGT00940000165857.a	ENSGT00940000159833	ENSGT00390000012547.a.f.a ##22	ENSGT00940000161170.c	ENSGT00940000154870.D.a.b	ENSGT00940000164082.b	ENSGT00940000164943.a.b	ENSGT00390000009995	ENSGT01050000244841.A.a.b.qb.a.a	ENSGT00940000157722	ENSGT00940000157091.t	ENSGT01090000260003.a.b.b.a.a.a.b.a	ENSGT01000000214413.a.v	ENSGT00940000155347.a.b	ENSGT00940000154555.e.a	ENSGT00940000157573	ENSGT00950000183103.c	ENSGT00940000155174.f
Eastern happy	MODERN SPECIES		TMEM266 (ENSACLG00000013308)	ISL2 (ENSACLG00000013328)	pstpip1b (ENSACLG00000013334)	tspan3b (ENSACLG00000013355)	ENSACLG00000013361	sec11a (ENSACLG00000013366)	ENSACLG00000013372	cry5 (ENSACLG00000013384)	FRMD5 (ENSACLG00000013400)	ENSACLG00000013429	wdr76 (ENSACLG00000013436)	ctsh (ENSACLG00000013446)	RASGRF1 (ENSACLG00000013484)	si:ch211-107o10.3 (ENSACLG00000013550)	tmed3 (ENSACLG00000013579)	idh2 (ENSACLG00000013584) ##22	ZNF710 (ENSACLG00000013604)	SEMA4B (ENSACLG00000013749)	serf2b (ENSACLG00000013781)	ENSACLG00000013794	ENSACLG00000013818	gnrhr2 (ENSACLG00000013892)	SPPL2A (ENSACLG00000013922)	trpm7 (ENSACLG00000014038)	bcl2l10 (ENSACLG00000014449)	gnb5b (ENSACLG00000014454)	MYO5A (ENSACLG00000014476)	arpp19b (ENSACLG00000014583)	atosa (ENSACLG00000014604)	onecut1 (ENSACLG00000014624)	ENSACLG00000014642
Zebra mbuna	MODERN SPECIES	1091	FBXO22 (ENSMZEG00005009086)	TMEM266 (ENSMZEG00005009047)	ISL2 (ENSMZEG00005009016)	pstpip1b (ENSMZEG00005008999)	tspan3b (ENSMZEG00005008969)	ENSMZEG00005008955	sec11a (ENSMZEG00005008947)	ENSMZEG00005008889	cry5 (ENSMZEG00005008861)	FRMD5 (ENSMZEG00005008843)	wdr76 (ENSMZEG00005008812)	ctsh (ENSMZEG00005008778)	RASGRF1 (ENSMZEG00005008707)	si:ch211-107o10.3 (ENSMZEG00005008678)	tmed3 (ENSMZEG00005008670)	idh2 (ENSMZEG00005008641) ##22	ZNF710 (ENSMZEG00005008625)	SEMA4B (ENSMZEG00005008589)	serf2b (ENSMZEG00005008432)	ENSMZEG00005008411	ENSMZEG00005008396	gnrhr2 (ENSMZEG00005008388)	SPPL2A (ENSMZEG00005008360)	trpm7 (ENSMZEG00005008151)	bcl2l10 (ENSMZEG00005008114)	gnb5b (ENSMZEG00005008092)	MYO5A (ENSMZEG00005007876)	arpp19b (ENSMZEG00005007835)	atosa (ENSMZEG00005007823)	onecut1 (ENSMZEG00005007812)	UNC13C (ENSMZEG00005007761)
P. nyererei	MODERN SPECIES	346	TMEM266 (ENSPNYG00000019028)	ISL2 (ENSPNYG00000019082)	ENSPNYG00000019102	tspan3b (ENSPNYG00000019118)	ENSPNYG00000019141	sec11a (ENSPNYG00000019160)	ENSPNYG00000019182	cry5 (ENSPNYG00000019197)	ENSPNYG00000019222	ENSPNYG00000019284	wdr76 (ENSPNYG00000019299)	ctsh (ENSPNYG00000019337)	RASGRF1 (ENSPNYG00000019425)	si:ch211-107o10.3 (ENSPNYG00000019498)	tmed3 (ENSPNYG00000019525)	idh2 (ENSPNYG00000019532) ##22	ZNF710 (ENSPNYG00000019563)	SEMA4B (ENSPNYG00000019570)	ENSPNYG00000019579	gnrhr2 (ENSPNYG00000019741)	ENSPNYG00000020192	ENSPNYG00000020222
Burton s mouthbrooder	MODERN SPECIES	442	FBXO22 (ENSHBUG00000022801)	TMEM266 (ENSHBUG00000022814)	ISL2 (ENSHBUG00000022854)	ENSHBUG00000022871	tspan3b (ENSHBUG00000022894)	ENSHBUG00000022926	sec11a (ENSHBUG00000022941)	ENSHBUG00000022956	cry5 (ENSHBUG00000023010)	FRMD5 (ENSHBUG00000023024)	wdr76 (ENSHBUG00000023030)	ctsh (ENSHBUG00000023042)	RASGRF1 (ENSHBUG00000023181)	si:ch211-107o10.3 (ENSHBUG00000023203)	tmed3 (ENSHBUG00000023212)	idh2 (ENSHBUG00000023258) ##22	ZNF710 (ENSHBUG00000023268)
Lyretail cichlid	MODERN SPECIES	290	TMEM266 (ENSNBRG00000000984)	ISL2 (ENSNBRG00000000947)	tspan3b (ENSNBRG00000000907)	ENSNBRG00000000880	sec11a (ENSNBRG00000000848)	ENSNBRG00000000822	ENSNBRG00000000814	cry5 (ENSNBRG00000000655)	FRMD5 (ENSNBRG00000000611)	wdr76 (ENSNBRG00000000571)	ctsh (ENSNBRG00000000467)	RASGRF1 (ENSNBRG00000000373)	ENSNBRG00000000367	si:ch211-107o10.3 (ENSNBRG00000000333)	tmed3 (ENSNBRG00000000327)	idh2 (ENSNBRG00000000293) ##22	ZNF710 (ENSNBRG00000000292)	SEMA4B (ENSNBRG00000012433)	serf2b (ENSNBRG00000012424)	ENSNBRG00000012419	gnrhr2 (ENSNBRG00000012018)	SPPL2A (ENSNBRG00000011800)	trpm7 (ENSNBRG00000011702)	bcl2l10 (ENSNBRG00000011674)	gnb5b (ENSNBRG00000011631)	MYO5A (ENSNBRG00000011530)	arpp19b (ENSNBRG00000011499)	atosa (ENSNBRG00000011482)	onecut1 (ENSNBRG00000011465)	UNC13C (ENSNBRG00000011383)	IGDCC4 (ENSNBRG00000011316)
Nile tilapia	MODERN SPECIES		pstpip1b (ENSONIG00000002518)	tspan3b (ENSONIG00000039543)	ENSONIG00000002537	sec11a (ENSONIG00000002538)	ENSONIG00000032586	ENSONIG00000038924	cry5 (ENSONIG00000002547)	FRMD5 (ENSONIG00000002554)	ENSONIG00000039984	ENSONIG00000042223	ENSONIG00000042234	wdr76 (ENSONIG00000002557)	ENSONIG00000002559	RASGRF1 (ENSONIG00000002561)	si:ch211-107o10.3 (ENSONIG00000033789)	idh2 (ENSONIG00000002577) ##22	ZNF710 (ENSONIG00000002589)	SEMA4B (ENSONIG00000002592)	ENSONIG00000031077	ENSONIG00000002598	ENSONIG00000002602	gnrhr2 (ENSONIG00000002603)	SPPL2A (ENSONIG00000002606)	trpm7 (ENSONIG00000002611)	bcl2l10 (ENSONIG00000035360)	gnb5b (ENSONIG00000002638)	MYO5A (ENSONIG00000002644)	atosa (ENSONIG00000002656)	onecut1 (ENSONIG00000002661)	ENSONIG00000033440	UNC13C (ENSONIG00000002663)
Midas cichlid	MODERN SPECIES	228	TMEM266 (ENSACIG00000021443)	ISL2 (ENSACIG00000021423)	ENSACIG00000021413	tspan3b (ENSACIG00000021399)	ENSACIG00000021388	sec11a (ENSACIG00000021374)	ENSACIG00000021362	cry5 (ENSACIG00000021350)	ENSACIG00000021316	ENSACIG00000021302	wdr76 (ENSACIG00000021288)	ENSACIG00000021125	RASGRF1 (ENSACIG00000021079)	si:ch211-107o10.3 (ENSACIG00000021058)	tmed3 (ENSACIG00000021034)	idh2 (ENSACIG00000021021) ##22	ZNF710 (ENSACIG00000020982)	SEMA4B (ENSACIG00000020908)	serf2b (ENSACIG00000020838)	ENSACIG00000020825	gnrhr2 (ENSACIG00000020280)	ENSACIG00000020241	ENSACIG00000020214	ENSACIG00000020202
Atherinomorphae	ANCESTRAL SPECIES	8	ENSGT00940000156738.d	ENSGT00940000153731.a.b.d	ENSGT00940000156932.a	ENSGT00940000154954.nb.b	ENSGT00940000154470.b	ENSGT00390000015600.c.a	ENSGT00940000158534.a.a	ENSGT00940000166058	ENSGT00940000156346.c.a	ENSGT00940000156346.d	ENSGT00510000048144	ENSGT00940000168558	ENSGT00940000157599.c.b	ENSGT00940000165857.a	ENSGT00940000159833	ENSGT00390000012547.a.f.a ##22	ENSGT00940000161170.c	ENSGT00940000154870.D.a.b	ENSGT00940000164082.b	ENSGT00940000164943.a.b	ENSGT00390000009995	ENSGT01050000244841.A.a.b.qb.a.a	ENSGT00940000157722	ENSGT00940000157091	ENSGT01090000260003.a.b.b.a.a.a.b.a	ENSGT01000000214413.a.v	ENSGT00940000155347.a.b	ENSGT00940000154555.e.a	ENSGT00940000157573	ENSGT00950000183103.c	ENSGT00940000155174.f
Cyprinodontiformes	ANCESTRAL SPECIES	9	ENSGT00940000156738.d	ENSGT00940000153731.a.b.d	ENSGT00940000156932.a	ENSGT00940000154954.nb.b	ENSGT00940000154470.b	ENSGT00390000015600.c.a	ENSGT00940000158534.a.a	ENSGT00940000166058	ENSGT00940000156346.c.a	ENSGT00940000156346.d	ENSGT00510000048144	ENSGT00940000168558	ENSGT00940000157599.c.b	ENSGT00940000165857.a	ENSGT00940000159833	ENSGT00390000012547.a.f.a ##22	ENSGT00940000161170.c	ENSGT00940000154870.D.a.b	ENSGT00940000164082.b	ENSGT00940000164943.a.b	ENSGT00390000009995	ENSGT01050000244841.A.a.b.qb.a.a	ENSGT00940000157722	ENSGT00940000157091	ENSGT01090000260003.a.b.b.a.a.a.b.a	ENSGT01000000214413.a.v	ENSGT00940000155347.a.b	ENSGT00940000154555.e.a	ENSGT00940000157573	ENSGT00950000183103.c	ENSGT00940000155174.f
Aplocheiloidei	ANCESTRAL SPECIES	16	ENSGT00390000013049	ENSGT00940000156738.d	ENSGT00940000153731.a.b.d	ENSGT00940000156932.a	ENSGT00940000154954.nb.b	ENSGT00940000154470.b	ENSGT00390000015600.c.a	ENSGT00940000158534.a.a	ENSGT00940000166058	ENSGT00940000156346.c.a	ENSGT00510000048144	ENSGT00940000168558	ENSGT00940000157599.c.b	ENSGT00940000165857.a	ENSGT00940000159833	ENSGT00390000012547.a.f.a ##22	ENSGT00940000161170.c	ENSGT00940000154870.D.a.b	ENSGT00940000164082.b	ENSGT00940000164943.a.b	ENSGT01050000244841.A.a.b.qb.a.a	ENSGT00940000157722	ENSGT00940000157091	ENSGT00940000173945	ENSGT01090000260003.a.b.b.a.a.a.b.a	ENSGT01000000214413.a.v	ENSGT00940000155347.a.b	ENSGT00940000154555.e.a	ENSGT00940000157573	ENSGT00950000183103.c	ENSGT00940000155174.f
Turquoise killifish	MODERN SPECIES	1616	ENSNFUG00015014325	SHANK2 (ENSNFUG00015014285)	CTTN (ENSNFUG00015014016)	ppfia1 (ENSNFUG00015010516)	ENSNFUG00015010316	ENSNFUG00015010302	ENSNFUG00015010288	arfgap2 (ENSNFUG00015010223)	PEX16 (ENSNFUG00015010190)	CCNB2 (ENSNFUG00015009080)	cd82a (ENSNFUG00015009058)	tspan18a (ENSNFUG00015009010)	ENSNFUG00015006967	RASGRF1 (ENSNFUG00015006520)	OLA.11922 (ENSNFUG00015006420)	idh2 (ENSNFUG00015005613) ##22	ENSNFUG00015005475	ZNF710 (ENSNFUG00015005470)	GPN1 (ENSNFUG00015005389)	stmn4l (ENSNFUG00015005339)	il17a/f1 (ENSNFUG00015005322)	ENSNFUG00015005295	gtf2a2 (ENSNFUG00015005283)	FOXB1 (ENSNFUG00015005277)	anxa2b (ENSNFUG00015005270)	ENSNFUG00015005257	ENSNFUG00015004680	KIFC3 (ENSNFUG00015004607)	ENSNFUG00015004471	slc9a5 (ENSNFUG00015004416)	cebpg (ENSNFUG00015004368)
Mangrove rivulus	MODERN SPECIES	44	FBXO22 (ENSKMAG00000017977)	TMEM266 (ENSKMAG00000017936)	ISL2 (ENSKMAG00000017913)	pstpip1b (ENSKMAG00000017872)	tspan3b (ENSKMAG00000017836)	ENSKMAG00000017823	sec11a (ENSKMAG00000017804)	ENSKMAG00000017767	cry5 (ENSKMAG00000017714)	FRMD5 (ENSKMAG00000017669)	wdr76 (ENSKMAG00000017609)	ENSKMAG00000017507	RASGRF1 (ENSKMAG00000017414)	si:ch211-107o10.3 (ENSKMAG00000017395)	tmed3 (ENSKMAG00000017385)	idh2 (ENSKMAG00000017348) ##22	ZNF710 (ENSKMAG00000017329)	SEMA4B (ENSKMAG00000017112)	serf2b (ENSKMAG00000017048)	ENSKMAG00000017033	gnrhr2 (ENSKMAG00000016946)	ENSKMAG00000016902	trpm7 (ENSKMAG00000016840)	ENSKMAG00000016817	GNB5 (ENSKMAG00000016775)	MYO5A (ENSKMAG00000016450)	arpp19b (ENSKMAG00000016321)	atosa (ENSKMAG00000016288)	onecut1 (ENSKMAG00000016260)	UNC13C (ENSKMAG00000016173)
Cyprinodontoidei	ANCESTRAL SPECIES	6	ENSGT01080000257410.A.f.l	ENSGT00940000161051.a.b	ENSGT01050000244841.A.a.b.qb.a.b	ENSGT00390000009312.b	ENSGT00550000074815	ENSGT00390000002211	ENSGT00940000154928.c.a.a	ENSGT00940000155500.e	ENSGT00950000183149.C.a	ENSGT00940000159082	ENSGT00390000016068	ENSGT00950000182940.b.a.a.g.b	ENSGT00940000154146.b.a.n	ENSGT00940000155645.i.b	ENSGT00390000015400	ENSGT00390000012547.a.f.a ##22	ENSGT00940000161170.c	ENSGT00940000154870.D.a.b	ENSGT00940000164082.b	ENSGT00940000164943.a.b	ENSGT00390000009995	ENSGT01050000244841.A.a.b.qb.a.a	ENSGT00940000157722	ENSGT00940000157091	ENSGT01090000260003.a.b.b.a.a.a.b.a	ENSGT01000000214413.a.v	ENSGT00940000155347.a.b	ENSGT00940000154555.e.a	ENSGT00940000157573	ENSGT00950000183103.c	ENSGT00940000155174.f
NAME_4	ANCESTRAL SPECIES	402														ENSGT00940000155645.i.b	ENSGT00390000015400	ENSGT00390000012547.a.f.a ##22	ENSGT00940000161170.c	ENSGT00940000154870.D.a.b	ENSGT00940000164082.b
Mummichog	MODERN SPECIES	407															mrpl46 (ENSFHEG00000013987)	idh2 (ENSFHEG00000014021) ##22	ZNF710 (ENSFHEG00000014039)	SEMA4B (ENSFHEG00000014046)	serf2b (ENSFHEG00000014062)	GNB5 (ENSFHEG00000014101)	bcl2l10 (ENSFHEG00000014109)	trpm7 (ENSFHEG00000014118)	ENSFHEG00000014150	ENSFHEG00000000340	ENSFHEG00000014173	ENSFHEG00000014189	MYO5A (ENSFHEG00000014329)	ARPP19 (ENSFHEG00000014342)	atosa (ENSFHEG00000014364)	onecut1 (ENSFHEG00000014377)	UNC13C (ENSFHEG00000000791)
Sheepshead minnow	MODERN SPECIES	313													NTRK3 (ENSCVAG00000018634)	ENSCVAG00000018581	mrpl46 (ENSCVAG00000018564)	idh2 (ENSCVAG00000018486) ##22	ilf2 (ENSCVAG00000018474)	pex11b (ENSCVAG00000018431)	snapin (ENSCVAG00000018423)	chtopa (ENSCVAG00000018401)	txnipa (ENSCVAG00000018340)	gatad2b (ENSCVAG00000018300)	ENSCVAG00000018255	STX12 (ENSCVAG00000018157)	ENSCVAG00000018136	ENSCVAG00000018083	trnau1apa (ENSCVAG00000018069)	sacm1la (ENSCVAG00000017991)	ENSCVAG00000017960	ENSCVAG00000000468	ppp1r11 (ENSCVAG00000017920)
Poeciliinae	ANCESTRAL SPECIES	13	ENSGT01080000257410.A.f.l	ENSGT00940000161051.a.b	ENSGT01050000244841.A.a.b.qb.a.b	ENSGT00390000009312.b	ENSGT00550000074815	ENSGT00390000002211	ENSGT00940000154928.c.a.a	ENSGT00940000155500.e	ENSGT00950000183149.C.a	ENSGT00940000159082	ENSGT00390000016068	ENSGT00950000182940.b.a.a.g.b	ENSGT00940000154146.b.a.n	ENSGT00940000155645.i.b	ENSGT00390000015400	ENSGT00390000012547.a.f.a ##22	ENSGT00940000161170.c	ENSGT00940000154870.D.a.b	ENSGT00940000164082.b	ENSGT00940000164943.a.b	ENSGT00390000009995	ENSGT01050000244841.A.a.b.qb.a.a	ENSGT00940000157722	ENSGT00940000157091	ENSGT01090000260003.a.b.b.a.a.a.b.a	ENSGT01000000214413.a.v	ENSGT00940000155347.a.b.z	ENSGT00940000154555.e.a	ENSGT00940000157573	ENSGT00950000183103.c	ENSGT00940000155174.f
Poecilia	ANCESTRAL SPECIES	4	ENSGT01080000257410.A.f.l	ENSGT00940000161051.a.b	ENSGT01050000244841.A.a.b.qb.a.b	ENSGT00390000009312.b	ENSGT00550000074815	ENSGT00390000002211	ENSGT00940000154928.c.a.a	ENSGT00940000155500.e	ENSGT00950000183149.C.a	ENSGT00940000159082	ENSGT00390000016068	ENSGT00950000182940.b.a.a.g.b	ENSGT00940000154146.b.a.n	ENSGT00940000155645.i.b	ENSGT00390000015400	ENSGT00390000012547.a.f.a ##22	ENSGT00940000161170.c	ENSGT00940000154870.D.a.b	ENSGT00940000164082.b	ENSGT00940000164943.a.b	ENSGT00390000009995	ENSGT01050000244841.A.a.b.qb.a.a	ENSGT00940000157722	ENSGT00940000157091	ENSGT01090000260003.a.b.b.a.a.a.b.a	ENSGT01000000214413.a.v	ENSGT00940000155347.a.b.z	ENSGT00940000154555.e.a	ENSGT00940000157573	ENSGT00950000183103.c	ENSGT00940000155174.f
NAME_6	ANCESTRAL SPECIES	52	ENSGT00940000157540.B	ENSGT01080000257410.A.f.l	ENSGT01050000244841.A.a.b.qb.a.b	ENSGT00390000009312.b	ENSGT00550000074815	ENSGT00390000002211	ENSGT00940000154928.c.a.a	ENSGT00940000155500.e	ENSGT00950000183149.C.a	ENSGT00940000159082	ENSGT00390000016068	ENSGT00950000182940.b.a.a.g.b	ENSGT00940000154146.b.a.n	ENSGT00940000155645.i.b	ENSGT00390000015400	ENSGT00390000012547.a.f.a ##22	ENSGT00940000161170.c	ENSGT00940000154870.D.a.b	ENSGT00940000164082.b	ENSGT00940000164943.a.b	ENSGT00390000009995	ENSGT01050000244841.A.a.b.qb.a.a	ENSGT00940000157722	ENSGT00940000157091	ENSGT01090000260003.a.b.b.a.a.a.b.a	ENSGT01000000214413.a.v	ENSGT00940000155347.a.b.z	ENSGT00940000154555.e.a	ENSGT00940000157573	ENSGT00950000183103.c	ENSGT00940000155174.f
Amazon molly	MODERN SPECIES	281	eprs1 (ENSPFOG00000017972)	TDP1 (ENSPFOG00000017920)	hmbox1a (ENSPFOG00000017886)	ENSPFOG00000022612	KIF13B (ENSPFOG00000017647)	ENSPFOG00000024738	ENSPFOG00000017630	PDPR (ENSPFOG00000017591)	mrps11 (ENSPFOG00000017576)	sv2ba (ENSPFOG00000017526)	ENSPFOG00000017515	ENSPFOG00000024728	ENSPFOG00000017450	NTRK3 (ENSPFOG00000017407)	mrpl46 (ENSPFOG00000017386)	idh2 (ENSPFOG00000017364) ##22	ZNF710 (ENSPFOG00000017353)	SEMA4B (ENSPFOG00000017308)	ENSPFOG00000017243	ENSPFOG00000023704	gnrhr2 (ENSPFOG00000017233)	ENSPFOG00000017135	trpm7 (ENSPFOG00000016953)	bcl2l10 (ENSPFOG00000023090)	gnb5b (ENSPFOG00000016895)	MYO5A (ENSPFOG00000016730)	ARPP19 (ENSPFOG00000016713)	atosa (ENSPFOG00000016694)	onecut1 (ENSPFOG00000016688)	UNC13C (ENSPFOG00000016363)	IGDCC4 (ENSPFOG00000016253)
Sailfin molly	MODERN SPECIES	599															mrpl46 (ENSPLAG00000001299)	idh2 (ENSPLAG00000001302) ##22	ZNF710 (ENSPLAG00000001306)	SEMA4B (ENSPLAG00000001309)	serf2b (ENSPLAG00000001311)	znf668 (ENSPLAG00000001315)	ENSPLAG00000001316	gnrhr2 (ENSPLAG00000001318)	ENSPLAG00000001323	trpm7 (ENSPLAG00000001330)
Guppy	MODERN SPECIES	455	ENSPREG00000004158	GLO1 (ENSPREG00000004177)	eprs1 (ENSPREG00000004302)	TDP1 (ENSPREG00000004545)	hmbox1a (ENSPREG00000004612)	KIF13B (ENSPREG00000004626)	ENSPREG00000004662	PDPR (ENSPREG00000004684)	mrps11 (ENSPREG00000004767)	sv2ba (ENSPREG00000004781)	ENSPREG00000004832	ENSPREG00000004881	NTRK3 (ENSPREG00000004904)	ENSPREG00000004986	mrpl46 (ENSPREG00000005001)	idh2 (ENSPREG00000005013) ##22	ZNF710 (ENSPREG00000005030)	SEMA4B (ENSPREG00000005048)	serf2b (ENSPREG00000005070)	ENSPREG00000005138	ENSPREG00000005176	gnrhr2 (ENSPREG00000005241)	trpm7 (ENSPREG00000005265)	bcl2l10 (ENSPREG00000005390)	gnb5b (ENSPREG00000005407)	MYO5A (ENSPREG00000005450)	arpp19b (ENSPREG00000005617)	atosa (ENSPREG00000005636)	onecut1 (ENSPREG00000005657)	UNC13C (ENSPREG00000005691)	IGDCC4 (ENSPREG00000005820)
Platyfish	MODERN SPECIES	18	hmbox1a (ENSXMAG00000011675)	ENSXMAG00000022654	ENSXMAG00000021030	KIF13B (ENSXMAG00000011641)	ENSXMAG00000011640	PDPR (ENSXMAG00000011614)	mrps11 (ENSXMAG00000011607)	sv2ba (ENSXMAG00000011573)	ENSXMAG00000021073	ENSXMAG00000027100	ENSXMAG00000022531	ENSXMAG00000022699	ENSXMAG00000022938	NTRK3 (ENSXMAG00000018069)	mrpl46 (ENSXMAG00000018093)	idh2 (ENSXMAG00000018097) ##22	ZNF710 (ENSXMAG00000018118)	ENSXMAG00000027864	ENSXMAG00000021297	SEMA4B (ENSXMAG00000024469)	SERF2 (ENSXMAG00000022361)	ENSXMAG00000024050	ENSXMAG00000024475	ENSXMAG00000029205	ENSXMAG00000029271	ENSXMAG00000018168	trpm7 (ENSXMAG00000018180)	bcl2l10 (ENSXMAG00000018227)	gnb5b (ENSXMAG00000018228)	ENSXMAG00000022883	ENSXMAG00000018243
Oryzias	ANCESTRAL SPECIES	13	ENSGT00940000154699.a.a	ENSGT01030000234542.b.a.a.b.a.a.a.a.b	ENSGT00390000013049	ENSGT00940000156738.d	ENSGT00940000153731.a.b.d	ENSGT00940000156932.a	ENSGT00940000154954.nb.b	ENSGT00940000154470.b	ENSGT00390000015600.c.a	ENSGT00940000158534.a.a.i	ENSGT00940000166058	ENSGT00940000156346.c.a	ENSGT00510000048144	ENSGT00940000157599.c.b	ENSGT00940000159833	ENSGT00390000012547.a.f.a ##22	ENSGT00940000161170.c	ENSGT00940000154870.D.a.b	ENSGT00940000164082.b	ENSGT00940000164943.a.b	ENSGT00390000009995	ENSGT01050000244841.A.a.b.qb.a.a	ENSGT00940000157722	ENSGT00940000157091	ENSGT01090000260003.a.b.b.a.a.a.b.a	ENSGT01000000214413.a.v	ENSGT00940000155347.a.b	ENSGT00940000154555.e.a	ENSGT00940000157573	ENSGT00950000183103.c	ENSGT00940000155174.f
Oryzias_a	ANCESTRAL SPECIES	6	ENSGT00940000154699.a.a	ENSGT01030000234542.b.a.a.b.a.a.a.a.b	ENSGT00390000013049	ENSGT00940000156738.d	ENSGT00940000153731.a.b.d	ENSGT00940000156932.a	ENSGT00940000154954.nb.b	ENSGT00940000154470.b	ENSGT00390000015600.c.a	ENSGT00940000158534.a.a.i	ENSGT00940000166058	ENSGT00940000156346.c.a	ENSGT00510000048144	ENSGT00940000157599.c.b	ENSGT00940000159833	ENSGT00390000012547.a.f.a ##22	ENSGT00940000161170.c	ENSGT00940000154870.D.a.b	ENSGT00940000164082.b	ENSGT00940000164943.a.b.c	ENSGT00390000009995	ENSGT01050000244841.A.a.b.qb.a.a	ENSGT00940000157722	ENSGT00940000157091	ENSGT01090000260003.a.b.b.a.a.a.b.a	ENSGT01000000214413.a.v	ENSGT00940000155347.a.b	ENSGT00940000154555.e.a	ENSGT00940000157573	ENSGT00950000183103.c	ENSGT00940000155174.f
Japanese Medaka HdrR	MODERN SPECIES	17	tln2a (ENSORLG00000012272)	tpma (ENSORLG00000012326)	FBXO22 (ENSORLG00000012342)	ENSORLG00000012354	ISL2 (ENSORLG00000012362)	pstpip1b (ENSORLG00000012376)	tspan3b (ENSORLG00000012395)	ENSORLG00000028747	sec11a (ENSORLG00000012429)	ENSORLG00000012445	cry5 (ENSORLG00000012462)	ENSORLG00000012503	wdr76 (ENSORLG00000012513)	RASGRF1 (ENSORLG00000012565)	tmed3 (ENSORLG00000025884)	ENSORLG00000012601 ##22	ENSORLG00000012610	ENSORLG00000012629	ENSORLG00000029886	ENSORLG00000012652	ENSORLG00000021879	ENSORLG00000012659	ENSORLG00000012687	trpm7 (ENSORLG00000012746)	bcl2l10 (ENSORLG00000012758)	gnb5b (ENSORLG00000012789)	MYO5A (ENSORLG00000023064)	ENSORLG00000012865	ARPP19 (ENSORLG00000012887)	atosa (ENSORLG00000012920)	onecut1 (ENSORLG00000012932)
Chinese medaka	MODERN SPECIES	404	NFATC3 (ENSOSIG00000020708)	ddx28 (ENSOSIG00000020703)	tln2a (ENSOSIG00000019639)	tpma (ENSOSIG00000018723)	FBXO22 (ENSOSIG00000018668)	TMEM266 (ENSOSIG00000018592)	ISL2 (ENSOSIG00000018586)	pstpip1b (ENSOSIG00000018582)	tspan3b (ENSOSIG00000018578)	ENSOSIG00000018575	sec11a (ENSOSIG00000018572)	ENSOSIG00000018568	FRMD5 (ENSOSIG00000018563)	wdr76 (ENSOSIG00000018559)	RASGRF1 (ENSOSIG00000016163)	idh2 (ENSOSIG00000012453) ##22	ENSOSIG00000012394	SEMA4B (ENSOSIG00000011924)	ENSOSIG00000011902	ENSOSIG00000011899	ENSOSIG00000011894	ENSOSIG00000011889	trpm7 (ENSOSIG00000010411)	bcl2l10 (ENSOSIG00000010360)	gnb5b (ENSOSIG00000010357)	ENSOSIG00000010355	ENSOSIG00000010354	arpp19b (ENSOSIG00000010353)	atosa (ENSOSIG00000010346)	onecut1 (ENSOSIG00000010342)	ENSOSIG00000010341
Oryzias_b	ANCESTRAL SPECIES	5	ENSGT00940000154699.a.a	ENSGT01030000234542.b.a.a.b.a.a.a.a.b	ENSGT00390000013049	ENSGT00940000156738.d	ENSGT00940000153731.a.b.d	ENSGT00940000156932.a	ENSGT00940000154954.nb.b	ENSGT00940000154470.b	ENSGT00390000015600.c.a	ENSGT00940000158534.a.a.i	ENSGT00940000166058	ENSGT00940000156346.c.a	ENSGT00510000048144	ENSGT00940000157599.c.b	ENSGT00940000159833	ENSGT00390000012547.a.f.a ##22	ENSGT00940000161170.c	ENSGT00940000154870.D.a.b	ENSGT00940000164082.b	ENSGT00940000164943.a.b	ENSGT00390000009995	ENSGT01050000244841.A.a.b.qb.a.a	ENSGT00940000157722	ENSGT00940000157091	ENSGT01090000260003.a.b.b.a.a.a.b.a	ENSGT01000000214413.a.v	ENSGT00940000155347.a.b	ENSGT00940000154555.e.a	ENSGT00940000157573	ENSGT00950000183103.c	ENSGT00940000155174.f
Indian medaka	MODERN SPECIES	26	tln2a (ENSOMEG00000012542)	tpma (ENSOMEG00000012616)	FBXO22 (ENSOMEG00000012655)	TMEM266 (ENSOMEG00000012691)	ISL2 (ENSOMEG00000012741)	pstpip1b (ENSOMEG00000012779)	tspan3b (ENSOMEG00000012822)	ENSOMEG00000012838	sec11a (ENSOMEG00000012885)	ENSOMEG00000012919	cry5 (ENSOMEG00000012950)	FRMD5 (ENSOMEG00000013022)	wdr76 (ENSOMEG00000013078)	RASGRF1 (ENSOMEG00000013176)	tmed3 (ENSOMEG00000013206)	idh2 (ENSOMEG00000013229) ##22	ZNF710 (ENSOMEG00000013254)	SEMA4B (ENSOMEG00000013295)	serf2b (ENSOMEG00000013312)	ENSOMEG00000013347	ENSOMEG00000013393	gnrhr2 (ENSOMEG00000013968)	ENSOMEG00000014127	trpm7 (ENSOMEG00000014236)	bcl2l10 (ENSOMEG00000014270)	gnb5b (ENSOMEG00000014300)	MYO5A (ENSOMEG00000014377)	ARPP19 (ENSOMEG00000014400)	atosa (ENSOMEG00000014416)	onecut1 (ENSOMEG00000014424)	UNC13C (ENSOMEG00000014498)
Percomorphaceae_C	ANCESTRAL SPECIES	11	ENSGT00940000156738.d	ENSGT00940000153731.a.b.d	ENSGT00940000156932.a	ENSGT00940000154954.nb.b	ENSGT00940000154470.b	ENSGT00390000015600.c.a	ENSGT00940000158534.a.a	ENSGT00940000166058	ENSGT00940000156346.c.a	ENSGT00940000156346.d	ENSGT00510000048144	ENSGT00940000160227.h	ENSGT00940000157599.c.b	ENSGT00940000165857.a	ENSGT00940000159833	ENSGT00390000012547.a.f.a ##22	ENSGT00940000161170.c	ENSGT00940000154870.D.a.b	ENSGT00940000164082.b	ENSGT00940000164943.a.b	ENSGT00390000009995	ENSGT01050000244841.A.a.b.qb.a.a	ENSGT00940000157722	ENSGT00940000157091	ENSGT01090000260003.a.b.b.a.a.a.b.a	ENSGT01000000214413.a.v	ENSGT00940000155347.a.b	ENSGT00940000154555.e.a	ENSGT00940000157573	ENSGT00950000183103.c	ENSGT00940000155174.f
Eupercaria	ANCESTRAL SPECIES	14	ENSGT00940000156738.d	ENSGT00940000153731.a.b.d	ENSGT00940000156932.a	ENSGT00940000154954.nb.b	ENSGT00940000154470.b	ENSGT00390000015600.c.a	ENSGT00940000158534.a.a	ENSGT00940000166058	ENSGT00940000156346.c.a	ENSGT00940000156346.d	ENSGT00510000048144	ENSGT00940000160227.h	ENSGT00940000157599.c.b	ENSGT00940000165857.a	ENSGT00940000159833	ENSGT00390000012547.a.f.a ##22	ENSGT00940000161170.c	ENSGT00940000154870.D.a.b	ENSGT00940000164082.b	ENSGT00940000164943.a.b	ENSGT00390000009995	ENSGT01050000244841.A.a.b.qb.a.a	ENSGT00940000157722	ENSGT00940000157091	ENSGT01090000260003.a.b.b.a.a.a.b.a	ENSGT01000000214413.a.v	ENSGT00940000155347.a.b	ENSGT00940000154555.e.a	ENSGT00940000157573	ENSGT00950000183103.c	ENSGT00940000155174.f
Tetraodontidae	ANCESTRAL SPECIES	4	ENSGT01030000234542.b.a.a.b.a.a.a.a.b	ENSGT00390000013049	ENSGT00940000156738.d	ENSGT00940000153731.a.b.d	ENSGT00940000156932.a	ENSGT00940000154954.nb.b	ENSGT00940000154470.b	ENSGT00390000015600.c.a	ENSGT00940000158534.a.a	ENSGT00940000166058	ENSGT00940000156346.c.a	ENSGT00510000048144	ENSGT00940000157599.c.b	ENSGT00940000165857.a	ENSGT00940000159833	ENSGT00390000012547.a.f.a ##22	ENSGT00940000161170.c	ENSGT00940000154870.D.a.b	ENSGT00940000164082.b	ENSGT00940000164943.a.b
Tetraodon	MODERN SPECIES	20	ENSTNIG00000011354	FBXO22 (ENSTNIG00000011355)	ENSTNIG00000011356	ISL2 (ENSTNIG00000011357)	pstpip1b (ENSTNIG00000011358)	tspan3b (ENSTNIG00000011359)	ENSTNIG00000001349	sec11a (ENSTNIG00000011360)	ENSTNIG00000011361	cry5 (ENSTNIG00000001082)	FRMD5 (ENSTNIG00000011362)	wdr76 (ENSTNIG00000001685)	RASGRF1 (ENSTNIG00000011363)	si:ch211-107o10.3 (ENSTNIG00000011364)	tmed3 (ENSTNIG00000011365)	idh2 (ENSTNIG00000011366) ##22	ZNF710 (ENSTNIG00000011367)	SEMA4B (ENSTNIG00000011368)	ARPP19 (ENSTNIG00000011369)	onecut1 (ENSTNIG00000011370)	ENSTNIG00000000706	UNC13C (ENSTNIG00000011371)	ENSTNIG00000017734	IGDCC4 (ENSTNIG00000017735)	SCAMP5 (ENSTNIG00000018543)	loxl1 (ENSTNIG00000018544)	insyn1 (ENSTNIG00000011969)	cd276 (ENSTNIG00000011968)	ubl7b (ENSTNIG00000011967)	ENSTNIG00000011966	ube2q1 (ENSTNIG00000011965)
Fugu	MODERN SPECIES	4	ISL2 (ENSTRUG00000005679)	ENSTRUG00000029879	pstpip1b (ENSTRUG00000020454)	tspan3b (ENSTRUG00000004757)	ENSTRUG00000004742	sec11a (ENSTRUG00000004535)	ENSTRUG00000031469	ENSTRUG00000033154	cry5 (ENSTRUG00000003780)	ENSTRUG00000031609	FRMD5 (ENSTRUG00000003355)	wdr76 (ENSTRUG00000020096)	ENSTRUG00000031041	tmed3 (ENSTRUG00000020033)	ENSTRUG00000031369	idh2 (ENSTRUG00000002406) ##22	ZNF710 (ENSTRUG00000002213)	ENSTRUG00000029714	serf2b (ENSTRUG00000029198)	ENSTRUG00000003119	ENSTRUG00000033081	ENSTRUG00000030751	ENSTRUG00000010511	tfb2m (ENSTRUG00000010411)	sccpdha.1 (ENSTRUG00000010289)	ENSTRUG00000010129	ENSTRUG00000032758	ENSTRUG00000009768	ENSTRUG00000026731	ENSTRUG00000028098	ENSTRUG00000009671
Eupecaria_A	ANCESTRAL SPECIES	15	ENSGT00940000156738.d	ENSGT00940000153731.a.b.d	ENSGT00940000156932.a	ENSGT00940000154954.nb.b	ENSGT00940000154470.b	ENSGT00390000015600.c.a	ENSGT00940000158534.a.a.l	ENSGT00940000166058	ENSGT00940000156346.c.a	ENSGT00940000156346.d	ENSGT00510000048144	ENSGT00940000160227.h	ENSGT00940000157599.c.b	ENSGT00940000165857.a	ENSGT00940000159833	ENSGT00390000012547.a.f.a ##22	ENSGT00940000161170.c	ENSGT00940000154870.D.a.b	ENSGT00940000164082.b	ENSGT00940000164943.a.b	ENSGT00390000009995	ENSGT01050000244841.A.a.b.qb.a.a	ENSGT00940000157722	ENSGT00940000157091	ENSGT01090000260003.a.b.b.a.a.a.b.a	ENSGT01000000214413.a.v	ENSGT00940000155347.a.b	ENSGT00940000154555.e.a	ENSGT00940000157573	ENSGT00950000183103.c	ENSGT00940000155174.f
Eupecaria_B	ANCESTRAL SPECIES	15	ENSGT00940000153731.a.b.d	ENSGT00940000156932.a	ENSGT00940000154954.nb.b	ENSGT00940000154470.b	ENSGT00390000015600.c.a	ENSGT00940000158534.a.a.k	ENSGT00940000158534.a.a.l	ENSGT00940000166058	ENSGT00940000156346.c.a	ENSGT00940000156346.d	ENSGT00510000048144	ENSGT00940000160227.h	ENSGT00940000157599.c.b	ENSGT00940000165857.a	ENSGT00940000159833	ENSGT00390000012547.a.f.a ##22	ENSGT00940000161170.c	ENSGT00940000154870.D.a.b	ENSGT00940000164082.b	ENSGT00940000164943.a.b	ENSGT00390000009995	ENSGT01050000244841.A.a.b.qb.a.a	ENSGT00940000157722	ENSGT00940000157091	ENSGT01090000260003.a.b.b.a.a.a.b.a	ENSGT01000000214413.a.v	ENSGT00940000155347.a.b	ENSGT00940000154555.e.a	ENSGT00940000157573	ENSGT00950000183103.c	ENSGT00940000155174.f
Eupecaria_C	ANCESTRAL SPECIES	11	ENSGT00940000156738.d	ENSGT00940000153731.a.b.d	ENSGT00940000156932.a	ENSGT00940000154954.nb.b	ENSGT00940000154470.b	ENSGT00390000015600.c.a	ENSGT00940000158534.a.a.k	ENSGT00940000158534.a.a.l	ENSGT00940000166058	ENSGT00940000156346.c.a	ENSGT00510000048144	ENSGT00940000160227.h	ENSGT00940000157599.c.b	ENSGT00940000165857.a	ENSGT00940000159833	ENSGT00390000012547.a.f.a ##22	ENSGT00940000161170.c	ENSGT00940000154870.D.a.b	ENSGT00940000164082.b	ENSGT00940000164943.a.b	ENSGT00390000009995	ENSGT01050000244841.A.a.b.qb.a.a	ENSGT00940000157722	ENSGT00940000157091	ENSGT01090000260003.a.b.b.a.a.a.b.a	ENSGT01000000214413.a.v	ENSGT00940000155347.a.b	ENSGT00940000157573	ENSGT00950000183103.c	ENSGT00940000155174.f	ENSGT00940000159637
Eupercaria_incertae_sedis	ANCESTRAL SPECIES	7	ENSGT01030000234542.b.a.a.b.a.a.a.a.b	ENSGT00390000013049	ENSGT00940000156738.d	ENSGT00940000153731.a.b.d	ENSGT00940000156932.a	ENSGT00940000154954.nb.b	ENSGT00940000172895	ENSGT00390000015600.c.a	ENSGT00940000158534.a.a.l	ENSGT00940000166058	ENSGT00940000156346.c.a	ENSGT00510000048144	ENSGT00940000160227.h	ENSGT00940000157599.c.b	ENSGT00940000165857.a	ENSGT00390000012547.a.f.a ##22	ENSGT00940000161170.c	ENSGT00940000154870.D.a.b	ENSGT00940000164082.b	ENSGT00940000164943.a.b	ENSGT00390000009995	ENSGT01050000244841.A.a.b.qb.a.a	ENSGT00940000157722	ENSGT00940000157091	ENSGT01090000260003.a.b.b.a.a.a.b.a	ENSGT01000000214413.a.v	ENSGT00940000155347.a.b	ENSGT00940000157573	ENSGT00950000183103.c	ENSGT00940000155174.f	ENSGT00940000159637
European seabass	MODERN SPECIES	18	ddx28 (ENSDLAG00005025025)	tln2a (ENSDLAG00005024096)	ENSDLAG00005023889	ENSDLAG00005023869	ISL2 (ENSDLAG00005023842)	tspan3b (ENSDLAG00005023818)	pstpip1b (ENSDLAG00005023824)	ENSDLAG00005028848	ENSDLAG00005023795	ENSDLAG00005023785	ENSDLAG00005023608	ENSDLAG00005023593	ENSDLAG00005023385	ENSDLAG00005022609	ENSDLAG00005022533	ENSDLAG00005022382 ##22	ENSDLAG00005022375	ENSDLAG00005022370	ENSDLAG00005022367	ENSDLAG00005027770	ENSDLAG00005032889	ENSDLAG00005022356	ENSDLAG00005022328	ENSDLAG00005019509	bcl2l10 (ENSDLAG00005019426)	gnb5b (ENSDLAG00005019356)	MYO5A (ENSDLAG00005016194)	atosa (ENSDLAG00005016075)	onecut1 (ENSDLAG00005028869)	UNC13C (ENSDLAG00005011014)	ENSDLAG00005010864
Large yellow croaker	MODERN SPECIES	480	ENSLCRG00005006463	FBXO22 (ENSLCRG00005006472)	TMEM266 (ENSLCRG00005006473)	ISL2 (ENSLCRG00005006474)	pstpip1b (ENSLCRG00005006475)	tspan3b (ENSLCRG00005006477)	ENSLCRG00005006478	sec11a (ENSLCRG00005006479)	ENSLCRG00005006483	cry5 (ENSLCRG00005006488)	FRMD5 (ENSLCRG00005006527)	wdr76 (ENSLCRG00005006899)	ctsh (ENSLCRG00005006901)	RASGRF1 (ENSLCRG00005006927)	si:ch211-107o10.3 (ENSLCRG00005009222)	idh2 (ENSLCRG00005009238) ##22	ENSLCRG00005010061	SEMA4B (ENSLCRG00005010064)	SERF2 (ENSLCRG00005010068)	ENSLCRG00005010069	ENSLCRG00005010071	gnrhr2 (ENSLCRG00005010073)	ENSLCRG00005010075	trpm7 (ENSLCRG00005010160)	ENSLCRG00005017414	gnb5b (ENSLCRG00005017422)	MYO5A (ENSLCRG00005017629)	atosa (ENSLCRG00005022172)	onecut1 (ENSLCRG00005022178)	UNC13C (ENSLCRG00005022220)	IGDCC4 (ENSLCRG00005022889)
Gilthead seabream	MODERN SPECIES	18	TMEM266 (ENSSAUG00010015743)	ISL2 (ENSSAUG00010015747)	pstpip1b (ENSSAUG00010015750)	tspan3b (ENSSAUG00010015754)	ENSSAUG00010015757	sec11a (ENSSAUG00010015760)	ENSSAUG00010015762	ENSSAUG00010015764	cry5 (ENSSAUG00010015769)	FRMD5 (ENSSAUG00010015793)	wdr76 (ENSSAUG00010015801)	ctsh (ENSSAUG00010015817)	RASGRF1 (ENSSAUG00010015950)	si:ch211-107o10.3 (ENSSAUG00010016037)	tmed3 (ENSSAUG00010016038)	idh2 (ENSSAUG00010016052) ##22	ZNF710 (ENSSAUG00010017868)	SEMA4B (ENSSAUG00010017871)	serf2b (ENSSAUG00010018009)	ENSSAUG00010018012	ENSSAUG00010018014	gnrhr2 (ENSSAUG00010018019)	ENSSAUG00010018025	trpm7 (ENSSAUG00010018135)	ENSSAUG00010022254	gnb5b (ENSSAUG00010022255)	MYO5A (ENSSAUG00010022325)	atosa (ENSSAUG00010004087)	onecut1 (ENSSAUG00010004136)	UNC13C (ENSSAUG00010004473)	IGDCC4 (ENSSAUG00010011719)
Perciformes	ANCESTRAL SPECIES	15	ENSGT00940000153731.a.b.d	ENSGT00940000156932.a	ENSGT00940000154954.nb.b	ENSGT00940000154470.b	ENSGT00390000015600.c.a	ENSGT00940000158534.a.a.k	ENSGT00940000158534.a.a.l	ENSGT00940000166058	ENSGT00940000156346.c.a	ENSGT00940000156346.d	ENSGT00510000048144	ENSGT00940000160227.h	ENSGT00940000157599.c.b	ENSGT00940000165857.a	ENSGT00940000159833	ENSGT00390000012547.a.f.a ##22	ENSGT00940000161170.c	ENSGT00940000154870.D.a.b	ENSGT00940000164082.b	ENSGT00940000164943.a.b	ENSGT00390000009995	ENSGT01050000244841.A.a.b.qb.a.a	ENSGT00940000157722	ENSGT00940000157091	ENSGT01090000260003.a.b.b.a.a.a.b.a	ENSGT01000000214413.a.v	ENSGT00940000155347.a.b	ENSGT00940000154555.e.a	ENSGT00940000157573	ENSGT00950000183103.c	ENSGT00940000155174.f
Cottioidei	ANCESTRAL SPECIES	13	ENSGT00940000156738.d	ENSGT00940000153731.a.b.d	ENSGT00940000156932.a	ENSGT00940000154954.nb.b	ENSGT00940000154470.b	ENSGT00390000015600.c.a	ENSGT00940000158534.a.a.l	ENSGT00940000166058	ENSGT00940000156346.c.a	ENSGT00940000156346.d	ENSGT00510000048144	ENSGT00940000160227.h	ENSGT00940000157599.c.b	ENSGT00940000165857.a	ENSGT00940000159833	ENSGT00390000012547.a.f.a ##22	ENSGT00940000161170.c	ENSGT00940000154870.D.a.b	ENSGT00940000164943.a.b	ENSGT00390000009995	ENSGT01050000244841.A.a.b.qb.a.a	ENSGT00940000157722	ENSGT00940000157091	ENSGT01090000260003.a.b.b.a.a.a.b.a	ENSGT01000000214413.a.v	ENSGT00940000155347.a.b	ENSGT00940000154555.e.a	ENSGT00940000157573	ENSGT00950000183103.c	ENSGT00940000155174.f	ENSGT00940000159637
Lumpfish	MODERN SPECIES	18	TMEM266 (ENSCLMG00005006911)	ISL2 (ENSCLMG00005006923)	ENSCLMG00005006927	pstpip1b (ENSCLMG00005006934)	tspan3b (ENSCLMG00005006935)	ENSCLMG00005006937	sec11a (ENSCLMG00005006941)	ENSCLMG00005006947	cry5 (ENSCLMG00005006950)	ENSCLMG00005006954	ENSCLMG00005006964	wdr76 (ENSCLMG00005006965)	ctsh (ENSCLMG00005006970)	RASGRF1 (ENSCLMG00005007081)	si:ch211-107o10.3 (ENSCLMG00005007092)	idh2 (ENSCLMG00005007118) ##22	ZNF710 (ENSCLMG00005010591)	SEMA4B (ENSCLMG00005010593)	ENSCLMG00005010595	ENSCLMG00005010598	ENSCLMG00005010601	SPPL2A (ENSCLMG00005010631)	trpm7 (ENSCLMG00005010718)	bcl2l10 (ENSCLMG00005018784)	gnb5b (ENSCLMG00005018786)	MYO5A (ENSCLMG00005018808)	atosa (ENSCLMG00005020541)	onecut1 (ENSCLMG00005020547)	ENSCLMG00005020548	UNC13C (ENSCLMG00005020549)	ENSCLMG00005020554
Stickleback	MODERN SPECIES	1	tpma (ENSGACG00000016394)	FBXO22 (ENSGACG00000016399)	TMEM266 (ENSGACG00000016404)	ISL2 (ENSGACG00000016405)	pstpip1b (ENSGACG00000016413)	tspan3b (ENSGACG00000016415)	sec11a (ENSGACG00000016430)	ENSGACG00000016438	cry5 (ENSGACG00000016441)	FRMD5 (ENSGACG00000016444)	wdr76 (ENSGACG00000016446)	ctsh (ENSGACG00000016451)	RASGRF1 (ENSGACG00000016457)	si:ch211-107o10.3 (ENSGACG00000016462)	tmed3 (ENSGACG00000016467)	idh2 (ENSGACG00000016476) ##22	ZNF710 (ENSGACG00000016481)	SEMA4B (ENSGACG00000016484)	ENSGACG00000016485	ENSGACG00000016490	gnrhr2 (ENSGACG00000016492)	ENSGACG00000016494	trpm7 (ENSGACG00000016500)	bcl2l10 (ENSGACG00000016505)	gnb5b (ENSGACG00000016509)	MYO5A (ENSGACG00000016512)	ARPP19 (ENSGACG00000016519)	atosa (ENSGACG00000016521)	onecut1 (ENSGACG00000016525)	UNC13C (ENSGACG00000016527)	IGDCC4 (ENSGACG00000016534)
Perciformes_a	ANCESTRAL SPECIES	13	ENSGT00390000013049	ENSGT00940000156738.d	ENSGT00940000153731.a.b.d	ENSGT00940000156932.a	ENSGT00940000154954.nb.b	ENSGT00940000154470.b	ENSGT00390000015600.c.a	ENSGT00940000158534.a.a.k	ENSGT00940000158534.a.a.l	ENSGT00940000166058	ENSGT00940000156346.c.a	ENSGT00510000048144	ENSGT00940000160227.h	ENSGT00940000157599.c.b	ENSGT00940000165857.a	ENSGT00390000012547.a.f.a ##22	ENSGT00940000161170.c	ENSGT00940000154870.D.a.b	ENSGT00940000164082.b	ENSGT00940000164943.a.b	ENSGT00390000009995	ENSGT01050000244841.A.a.b.qb.a.a	ENSGT00940000157722	ENSGT00940000157091	ENSGT00940000173945	ENSGT01000000214413.a.v	ENSGT00940000155347.a.b	ENSGT00940000157573	ENSGT00950000183103.c	ENSGT00940000155174.f	ENSGT00940000159637
Channel bull blenny	MODERN SPECIES	17	ISL2 (ENSCGOG00000006024)	pstpip1b (ENSCGOG00000006031)	tspan3b (ENSCGOG00000006034)	ENSCGOG00000006052	sec11a (ENSCGOG00000006061)	ENSCGOG00000006319	ENSCGOG00000006320	ENSCGOG00000006327	ENSCGOG00000006330	ENSCGOG00000006334	cry5 (ENSCGOG00000006336)	FRMD5 (ENSCGOG00000006407)	ctsh (ENSCGOG00000006964)	RASGRF1 (ENSCGOG00000007461)	si:ch211-107o10.3 (ENSCGOG00000009308)	idh2 (ENSCGOG00000009317) ##22	ZNF710 (ENSCGOG00000009567)	SEMA4B (ENSCGOG00000009577)	SERF2 (ENSCGOG00000009610)	ENSCGOG00000009615	ENSCGOG00000009621	gnrhr2 (ENSCGOG00000009624)	ENSCGOG00000009656	trpm7 (ENSCGOG00000009914)	ENSCGOG00000012995	gnb5b (ENSCGOG00000013048)	MYO5A (ENSCGOG00000014416)	atosa (ENSCGOG00000014574)	onecut1 (ENSCGOG00000014633)	ENSCGOG00000014636	ENSCGOG00000014638
Pike perch	MODERN SPECIES	29	tpma (ENSSLUG00000014870)	FBXO22 (ENSSLUG00000014958)	TMEM266 (ENSSLUG00000014961)	ISL2 (ENSSLUG00000014969)	pstpip1b (ENSSLUG00000014989)	tspan3b (ENSSLUG00000014998)	ENSSLUG00000015007	sec11a (ENSSLUG00000015016)	ENSSLUG00000015031	cry5 (ENSSLUG00000015034)	FRMD5 (ENSSLUG00000015054)	wdr76 (ENSSLUG00000015065)	ctsh (ENSSLUG00000015122)	RASGRF1 (ENSSLUG00000015283)	si:ch211-107o10.3 (ENSSLUG00000015551)	idh2 (ENSSLUG00000015568) ##22	ENSSLUG00000015614	SEMA4B (ENSSLUG00000015635)	SERF2 (ENSSLUG00000015706)	ENSSLUG00000015715	ENSSLUG00000015730	ENSSLUG00000015771	ENSSLUG00000015987	gstt1b (ENSSLUG00000001460)	ddt (ENSSLUG00000001471)	chchd10 (ENSSLUG00000001475)	ENSSLUG00000001494	ENSSLUG00000001498	ENSSLUG00000001504	ENSSLUG00000001513	p2rx3b (ENSSLUG00000001589)
Ballan wrasse	MODERN SPECIES		FBXO22 (ENSLBEG00000006447)	TMEM266 (ENSLBEG00000006478)	ISL2 (ENSLBEG00000006532)	pstpip1b (ENSLBEG00000006586)	tspan3b (ENSLBEG00000006633)	ENSLBEG00000006675	sec11a (ENSLBEG00000006699)	ENSLBEG00000006761	cry5 (ENSLBEG00000006820)	FRMD5 (ENSLBEG00000006850)	wdr76 (ENSLBEG00000006914)	ctsh (ENSLBEG00000006944)	RASGRF1 (ENSLBEG00000006988)	si:ch211-107o10.3 (ENSLBEG00000007077)	tmed3 (ENSLBEG00000007137)	idh2 (ENSLBEG00000007152) ##22	ZNF710 (ENSLBEG00000007226)	SEMA4B (ENSLBEG00000007254)	SERF2 (ENSLBEG00000007293)	ENSLBEG00000007312	gnrhr2 (ENSLBEG00000007330)	SPPL2A (ENSLBEG00000007365)	ENSLBEG00000007423	ENSLBEG00000007450	ENSLBEG00000007491	ENSLBEG00000007527	uraha (ENSLBEG00000007545)	ENSLBEG00000007566	pdcd5 (ENSLBEG00000007622)	mvda (ENSLBEG00000007682)	cyba (ENSLBEG00000007737)
Percomorphaceae_D	ANCESTRAL SPECIES	11	ENSGT00390000013049	ENSGT00940000156738.d	ENSGT00940000153731.a.b.d	ENSGT00940000156932.a	ENSGT00940000154954.nb.b	ENSGT00940000154470.b	ENSGT00390000015600.c.a	ENSGT00940000158534.a.a	ENSGT00940000166058	ENSGT00940000156346.c.a	ENSGT00510000048144	ENSGT00940000160227.h	ENSGT00940000157599.c.b	ENSGT00940000165857.a	ENSGT00940000159833	ENSGT00390000012547.a.f.a ##22	ENSGT00940000161170.c	ENSGT00940000154870.D.a.b	ENSGT00940000164082.b	ENSGT00940000164943.a.b	ENSGT00390000009995	ENSGT01050000244841.A.a.b.qb.a.a	ENSGT00940000157722	ENSGT00940000157091	ENSGT01090000260003.a.b.b.a.a.a.b.a	ENSGT01000000214413.a.v	ENSGT00940000155347.a.b	ENSGT00940000154555.e.a	ENSGT00940000157573	ENSGT00950000183103.c	ENSGT00940000155174.f
Carangaria	ANCESTRAL SPECIES	11	ENSGT00390000013049	ENSGT00940000156738.d	ENSGT00940000153731.a.b.d	ENSGT00940000156932.a	ENSGT00940000154954.nb.b	ENSGT00940000154470.b	ENSGT00390000015600.c.a	ENSGT00940000158534.a.a	ENSGT00940000166058	ENSGT00940000156346.c.a	ENSGT00510000048144	ENSGT00940000160227.h	ENSGT00940000157599.c.b	ENSGT00940000165857.a	ENSGT00940000159833	ENSGT00390000012547.a.f.a ##22	ENSGT00940000161170.c	ENSGT00940000154870.D.a.b	ENSGT00940000164082.b	ENSGT00940000164943.a.b	ENSGT00390000009995	ENSGT01050000244841.A.a.b.qb.a.a	ENSGT00940000157722	ENSGT00940000157091	ENSGT01090000260003.a.b.b.a.a.a.b.a	ENSGT01000000214413.a.v	ENSGT00940000155347.a.b	ENSGT00940000154555.e.a	ENSGT00940000157573	ENSGT00950000183103.c	ENSGT00940000155174.f
Pleuronectoidei	ANCESTRAL SPECIES	10	ENSGT01030000234542.b.a.a.b.a.a.a.a.b	ENSGT00390000013049	ENSGT00940000156738.d	ENSGT00940000153731.a.b.d	ENSGT00940000156932.a	ENSGT00940000154954.nb.b	ENSGT00940000154470.b	ENSGT00390000015600.c.a	ENSGT00940000158534.a.a	ENSGT00940000166058	ENSGT00940000156346.c.a	ENSGT00510000048144	ENSGT00940000157599.c.b	ENSGT00940000165857.a	ENSGT00940000159833	ENSGT00390000012547.a.f.a ##22	ENSGT00940000161170.c	ENSGT00940000154870.D.a.b	ENSGT00940000164082.b	ENSGT01030000237493	ENSGT00940000164943.a.b	ENSGT00390000009995	ENSGT01050000244841.A.a.b.qb.a.a	ENSGT00940000157722	ENSGT00940000157091	ENSGT01090000260003.a.b.b.a.a.a.b.a	ENSGT01000000214413.a.v	ENSGT00940000155347.a.b	ENSGT00940000154555.e.a	ENSGT00940000157573	ENSGT00950000183103.c
Tongue sole	MODERN SPECIES	15	SHF (ENSCSEG00000012383)	ubl7b (ENSCSEG00000012356)	cd276 (ENSCSEG00000012334)	ISL2 (ENSCSEG00000012312)	pstpip1b (ENSCSEG00000012277)	tspan3b (ENSCSEG00000012259)	ENSCSEG00000012253	sec11a (ENSCSEG00000012229)	ENSCSEG00000012211	cry5 (ENSCSEG00000012138)	FRMD5 (ENSCSEG00000012093)	wdr76 (ENSCSEG00000012070)	RASGRF1 (ENSCSEG00000012050)	tmed3 (ENSCSEG00000012045)	si:ch211-107o10.3 (ENSCSEG00000012021)	idh2 (ENSCSEG00000012012) ##22	ZNF710 (ENSCSEG00000012005)	SEMA4B (ENSCSEG00000011992)	serf2b (ENSCSEG00000011987)	ENSCSEG00000011979	ENSCSEG00000011968	ENSCSEG00000011956	gnrhr2 (ENSCSEG00000011942)	ENSCSEG00000011908	trpm7 (ENSCSEG00000011809)	MDGA1 (ENSCSEG00000011779)	ENSCSEG00000011770	gnpnat1 (ENSCSEG00000011760)	styx (ENSCSEG00000011765)	AMFR (ENSCSEG00000011741)	ENSCSEG00000011737
Turbot	MODERN SPECIES	17	ENSSMAG00000006952	FBXO22 (ENSSMAG00000035738)	ENSSMAG00000006995	ISL2 (ENSSMAG00000007020)	pstpip1b (ENSSMAG00000007048)	tspan3b (ENSSMAG00000031930)	ENSSMAG00000007098	ENSSMAG00000007113	ENSSMAG00000024089	ENSSMAG00000007127	ENSSMAG00000007160	ENSSMAG00000007210	ENSSMAG00000007267	ENSSMAG00000007307	ENSSMAG00000007344	ENSSMAG00000007366 ##22	ENSSMAG00000007380	ENSSMAG00000007411	ENSSMAG00000007449	ENSSMAG00000024929	ENSSMAG00000037109	ENSSMAG00000007489	ENSSMAG00000007510	ENSSMAG00000007527	Lec1 (ENSSMAG00000007535)	ENSSMAG00000007556	ENSSMAG00000007608	bcl2l10 (ENSSMAG00000024868)	gnb5b (ENSSMAG00000007725)	MYO5A (ENSSMAG00000007750)	atosa (ENSSMAG00000007889)
Carangaria_A	ANCESTRAL SPECIES	20	ENSGT00390000013049	ENSGT00940000156738.d	ENSGT00940000153731.a.b.d	ENSGT00940000156932.a	ENSGT00940000154954.nb.b	ENSGT00940000154470.b	ENSGT00390000015600.c.a	ENSGT00940000158534.a.a	ENSGT00940000166058	ENSGT00940000156346.c.a	ENSGT00510000048144	ENSGT00940000160227.h	ENSGT00940000157599.c.b	ENSGT00940000165857.a	ENSGT00940000159833	ENSGT00390000012547.a.f.a ##22	ENSGT00940000161170.c	ENSGT00940000154870.D.a.b	ENSGT00940000164082.b	ENSGT00940000164943.a.b	ENSGT00390000009995	ENSGT01050000244841.A.a.b.qb.a.a	ENSGT00940000157722	ENSGT00940000157091	ENSGT01090000262427	ENSGT01090000260003.a.b.b.a.a.a.b.a	ENSGT01000000214413.a.v	ENSGT00940000155347.a.b	ENSGT00940000154555.e.a	ENSGT00940000157573	ENSGT00950000183103.c
Barramundi perch	MODERN SPECIES	98	tpma (ENSLCAG00010024730)	FBXO22 (ENSLCAG00010024680)	TMEM266 (ENSLCAG00010024672)	ISL2 (ENSLCAG00010024668)	pstpip1b (ENSLCAG00010024657)	tspan3b (ENSLCAG00010024653)	ENSLCAG00010024651	sec11a (ENSLCAG00010024643)	ENSLCAG00010024633	cry5 (ENSLCAG00010024626)	FRMD5 (ENSLCAG00010024548)	wdr76 (ENSLCAG00010024501)	ENSLCAG00010024489	RASGRF1 (ENSLCAG00010024192)	si:ch211-107o10.3 (ENSLCAG00010024107)	idh2 (ENSLCAG00010023893) ##22	ZNF710 (ENSLCAG00010023812)	SEMA4B (ENSLCAG00010023801)	serf2b (ENSLCAG00010023790)	ENSLCAG00010023785	ENSLCAG00010023779	gnrhr2 (ENSLCAG00010023771)	ENSLCAG00010023765	ENSLCAG00010023763	trpm7 (ENSLCAG00010023417)	ENSLCAG00010023259	bcl2l10 (ENSLCAG00010023256)	gnb5b (ENSLCAG00010023230)	MYO5A (ENSLCAG00010021053)	atosa (ENSLCAG00010020256)	onecut1 (ENSLCAG00010020252)
Seriola	ANCESTRAL SPECIES	13	ENSGT00390000013049	ENSGT00940000156738.d	ENSGT00940000153731.a.b.d	ENSGT00940000156932.a	ENSGT00940000154954.nb.b	ENSGT00940000154470.b	ENSGT00390000015600.c.a	ENSGT00940000158534.a.a	ENSGT00940000166058	ENSGT00940000156346.c.a	ENSGT00510000048144	ENSGT00940000160227.h	ENSGT00940000157599.c.b	ENSGT00940000165857.a	ENSGT00940000159833	ENSGT00390000012547.a.f.a ##22	ENSGT00940000161170.c	ENSGT00940000154870.D.a.b	ENSGT00940000164082.b	ENSGT00940000164943.a.b	ENSGT00390000009995	ENSGT01050000244841.A.a.b.qb.a.a	ENSGT00940000157722	ENSGT00940000157091	ENSGT01090000262427	ENSGT01090000260003.a.b.b.a.a.a.b.a	ENSGT01000000214413.a.v	ENSGT00940000155347.a.b	ENSGT00940000154555.e.a	ENSGT00940000157573	ENSGT00950000183103.c
Greater amberjack	MODERN SPECIES	1	TMEM266 (ENSSDUG00000003644)	ENSSDUG00000003706	ISL2 (ENSSDUG00000003719)	pstpip1b (ENSSDUG00000003745)	tspan3b (ENSSDUG00000003759)	ENSSDUG00000003796	sec11a (ENSSDUG00000003816)	ENSSDUG00000003842	cry5 (ENSSDUG00000003893)	FRMD5 (ENSSDUG00000003924)	wdr76 (ENSSDUG00000003973)	ctsh (ENSSDUG00000003990)	RASGRF1 (ENSSDUG00000004024)	si:ch211-107o10.3 (ENSSDUG00000004090)	tmed3 (ENSSDUG00000004099)	idh2 (ENSSDUG00000004104) ##22	ZNF710 (ENSSDUG00000004144)	SEMA4B (ENSSDUG00000004157)	serf2b (ENSSDUG00000004170)	ENSSDUG00000004175	ENSSDUG00000004197	gnrhr2 (ENSSDUG00000004223)	ENSSDUG00000004277	SPPL2A (ENSSDUG00000004308)	trpm7 (ENSSDUG00000004380)	bcl2l10 (ENSSDUG00000004561)	gnb5b (ENSSDUG00000004571)	MYO5A (ENSSDUG00000004605)	ARPP19 (ENSSDUG00000004682)	atosa (ENSSDUG00000004697)	onecut1 (ENSSDUG00000004706)
Yellowtail amberjack	MODERN SPECIES	2888	TMEM266 (ENSSLDG00000004111)	ISL2 (ENSSLDG00000004072)	ENSSLDG00000004048	ENSSLDG00000004014	tspan3b (ENSSLDG00000003958)	ENSSLDG00000003908	sec11a (ENSSLDG00000003879)	ENSSLDG00000003853	cry5 (ENSSLDG00000003800)	FRMD5 (ENSSLDG00000003721)	wdr76 (ENSSLDG00000003698)	ctsh (ENSSLDG00000003683)	RASGRF1 (ENSSLDG00000003567)	si:ch211-107o10.3 (ENSSLDG00000003435)	tmed3 (ENSSLDG00000003420)	idh2 (ENSSLDG00000003354) ##22	ZNF710 (ENSSLDG00000003269)	SEMA4B (ENSSLDG00000003235)	serf2b (ENSSLDG00000003105)	ENSSLDG00000003073	ENSSLDG00000003050	gnrhr2 (ENSSLDG00000003029)	ENSSLDG00000002590	trpm7 (ENSSLDG00000002436)	ENSSLDG00000002407	bcl2l10 (ENSSLDG00000002389)	gnb5b (ENSSLDG00000002330)	MYO5A (ENSSLDG00000002206)	ARPP19 (ENSSLDG00000002173)	atosa (ENSSLDG00000002159)	onecut1 (ENSSLDG00000002139)
Anabantaria	ANCESTRAL SPECIES	11	ENSGT00390000004215.a.b.b.c.a.b.a.c	ENSGT00940000160309.e.b	ENSGT00940000158707.a.a	ENSGT00390000001802	ENSGT00940000159464	ENSGT00940000160974.b.d	ENSGT00940000164955.a	ENSGT00940000155733.a.a	ENSGT00940000164356.a	ENSGT00930000151062	ENSGT00940000156346.c.a	ENSGT00510000048144	ENSGT00940000160227.h	ENSGT00940000157599.c.b	ENSGT00940000165857.a	ENSGT00390000012547.a.f.a ##22	ENSGT00940000161170.c	ENSGT00940000154870.D.a.b	ENSGT00940000164082.b	ENSGT00940000164943.a.b	ENSGT00390000009995	ENSGT01050000244841.A.a.b.qb.a.a	ENSGT00940000157722	ENSGT00940000157091	ENSGT01090000260003.a.b.b.a.a.a.b.a	ENSGT01000000214413.a.v	ENSGT00940000155347.a.b	ENSGT00940000157573	ENSGT00950000183103.c	ENSGT00940000155174.f	ENSGT00940000159637
Zig-zag eel	MODERN SPECIES	17	rasl12 (ENSMAMG00000000507)	ENSMAMG00000000530	spg21 (ENSMAMG00000000536)	ENSMAMG00000000594	ENSMAMG00000000683	ENSMAMG00000025874	ENSMAMG00000000725	ENSMAMG00000026772	ENSMAMG00000000872	ENSMAMG00000000890	ENSMAMG00000000925	ENSMAMG00000000998	ENSMAMG00000001038	ENSMAMG00000001059	ENSMAMG00000001135	ENSMAMG00000001167 ##22	ENSMAMG00000001213	ENSMAMG00000001236	ENSMAMG00000024911	ENSMAMG00000027772	ENSMAMG00000001295	ENSMAMG00000001335	ENSMAMG00000001393	ENSMAMG00000001504	ENSMAMG00000001829	ENSMAMG00000026723	gnb5b (ENSMAMG00000001940)	MYO5A (ENSMAMG00000001983)	atosa (ENSMAMG00000002104)	onecut1 (ENSMAMG00000002131)	UNC13C (ENSMAMG00000002152)
Anabantoidei	ANCESTRAL SPECIES	8	ENSGT00390000004215.a.b.b.c.a.b.a.c	ENSGT00940000160309.e.b	ENSGT00940000158707.a.a	ENSGT00390000001802	ENSGT00940000159464	ENSGT00940000160974.b.d	ENSGT00940000164955.a	ENSGT00940000155733.a.a	ENSGT00940000164356.a	ENSGT00930000151062	ENSGT00940000156346.c.a	ENSGT00510000048144	ENSGT00940000160227.h	ENSGT00940000157599.c.b	ENSGT00940000165857.a	ENSGT00390000012547.a.f.a ##22	ENSGT00940000161170.c	ENSGT00940000154870.D.a.b	ENSGT00940000164082.b	ENSGT00940000164943.a.b	ENSGT00390000009995	ENSGT01050000244841.A.a.b.qb.a.a	ENSGT00940000157722	ENSGT00940000157091	ENSGT01090000260003.a.b.b.a.a.a.b.a	ENSGT01000000214413.a.v	ENSGT00940000155347.a.b	ENSGT00940000157573	ENSGT00950000183103.c	ENSGT00940000155174.f	ENSGT00940000159637
Siamese fighting fish	MODERN SPECIES	14	ttc17 (ENSBSLG00000010086)	hsd17b12b (ENSBSLG00000009741)	LRRC4C (ENSBSLG00000009547)	apip (ENSBSLG00000009527)	slc1a2a (ENSBSLG00000009104)	slc35c1 (ENSBSLG00000009076)	ENSBSLG00000009050	ENSBSLG00000008955	A3GALT2 (ENSBSLG00000008699)	ENSBSLG00000008692	lrp4 (ENSBSLG00000007912)	FRMD5 (ENSBSLG00000006671)	wdr76 (ENSBSLG00000005796)	RASGRF1 (ENSBSLG00000005365)	si:ch211-107o10.3 (ENSBSLG00000005247)	idh2 (ENSBSLG00000004876) ##22	ZNF710 (ENSBSLG00000004830)	ENSBSLG00000004779	HERC1 (ENSBSLG00000004100)	ENSBSLG00000004079	ENSBSLG00000004076	ENSBSLG00000004066	ENSBSLG00000004060	ENSBSLG00000004040	dis3l (ENSBSLG00000003997)	tipin (ENSBSLG00000003982)	lctla (ENSBSLG00000003847)	crybgx (ENSBSLG00000003749)	ccnb2 (ENSBSLG00000003737)	kif23 (ENSBSLG00000016203)	ENSBSLG00000016193
Climbing perch	MODERN SPECIES	16	ENSATEG00000022843	ENSATEG00000022854	ENSATEG00000022880	ENSATEG00000022891	ENSATEG00000026519	ENSATEG00000022898	ENSATEG00000022905	ENSATEG00000022912	ENSATEG00000022924	ENSATEG00000022936	ENSATEG00000022945	ENSATEG00000022958	ENSATEG00000000031	ENSATEG00000000094	ENSATEG00000000126	ENSATEG00000000169 ##22	ENSATEG00000000226	ENSATEG00000000284	ENSATEG00000000292	ENSATEG00000000300	ENSATEG00000028447	ENSATEG00000000318	ENSATEG00000000885	ENSATEG00000000896	bcl2l10 (ENSATEG00000001038)	gnb5b (ENSATEG00000001054)	MYO5A (ENSATEG00000001171)	atosa (ENSATEG00000001318)	onecut1 (ENSATEG00000001323)	UNC13C (ENSATEG00000001344)	ENSATEG00000001505
Pinecone sodierfish	MODERN SPECIES	17	TMEM266 (ENSMMDG00005020930)	ENSMMDG00005020926	etfa (ENSMMDG00005020591)	ISL2 (ENSMMDG00005020573)	pstpip1b (ENSMMDG00005020568)	tspan3b (ENSMMDG00005020563)	ENSMMDG00005020561	sec11a (ENSMMDG00005020559)	ENSMMDG00005020553	cry5 (ENSMMDG00005020545)	FRMD5 (ENSMMDG00005020498)	wdr76 (ENSMMDG00005020481)	ctsh (ENSMMDG00005020136)	RASGRF1 (ENSMMDG00005020110)	si:ch211-107o10.3 (ENSMMDG00005020101)	idh2 (ENSMMDG00005019031) ##22	ZNF710 (ENSMMDG00005019017)	SEMA4B (ENSMMDG00005018994)	serf2b (ENSMMDG00005018992)	ENSMMDG00005018989	ENSMMDG00005018987	gnrhr2 (ENSMMDG00005018986)	ENSMMDG00005018983	trpm7 (ENSMMDG00005000948)	ENSMMDG00005000753	GNB5 (ENSMMDG00005000744)	MYO5A (ENSMMDG00005000410)	arpp19b (ENSMMDG00005000232)	atosa (ENSMMDG00005000212)	onecut1 (ENSMMDG00005000203)	UNC13C (ENSMMDG00005000135)
Cod	MODERN SPECIES	5	tpma (ENSGMOG00000017182)	FBXO22 (ENSGMOG00000017206)	ENSGMOG00000036490	ISL2 (ENSGMOG00000006786)	pstpip1b (ENSGMOG00000017272)	tspan3b (ENSGMOG00000017307)	ENSGMOG00000017323	ENSGMOG00000017333	ENSGMOG00000022836	ENSGMOG00000033955	ENSGMOG00000017408	ENSGMOG00000017430	CTSH (ENSGMOG00000017462)	ENSGMOG00000017486	ENSGMOG00000017523	ENSGMOG00000017537 ##22	ENSGMOG00000034247	ENSGMOG00000017568	ENSGMOG00000001528	ENSGMOG00000001246	ENSGMOG00000001268	ENSGMOG00000001293	smad6a (ENSGMOG00000032620)	ENSGMOG00000008364	map2k5 (ENSGMOG00000001328)	skor1a (ENSGMOG00000035936)	PIAS1 (ENSGMOG00000001390)	ENSGMOG00000001426	ENSGMOG00000001435	UACA (ENSGMOG00000001457)	tle3a (ENSGMOG00000001493)
Protacanthopterygii	ANCESTRAL SPECIES	160													ENSGT00940000157599.c.b	ENSGT00940000165857.a	ENSGT00940000159833	ENSGT00390000012547.a.f.a ##22	ENSGT00940000161170.c	ENSGT00940000154870.D.a.b	ENSGT00390000009995	ENSGT01050000244841.A.a.b.qb.a	ENSGT01080000257410.A.f.l	ENSGT00940000157540.B	ENSGT00940000156291.e	ENSGT00940000156205.g	ENSGT00940000157771	ENSGT00940000156682.e.a	ENSGT00970000193421.C.b	ENSGT00940000154876.a.a.a.a	ENSGT00940000154876.a.a.a.b	ENSGT00950000182940.b.a.a.g.b	ENSGT00940000154146.b.a
Salmoninae	ANCESTRAL SPECIES	287														ENSGT00940000161170.c.h	ENSGT00940000159833	ENSGT00390000012547.a.f.a ##22	ENSGT00940000161170.c.g	ENSGT01080000257410.A.f.l	ENSGT00940000157540.B	ENSGT00940000156291.e	ENSGT00940000157771	ENSGT00940000156682.e.a	ENSGT00970000193421.C.b	ENSGT00940000154876.a.a.a.a	ENSGT00940000154876.a.a.a.b	ENSGT00950000182940.b.a.a.g.b	ENSGT00940000154146.b.b.b	ENSGT00940000154146.b.a.f	ENSGT00940000155645.i.b	ENSGT00390000015400	ENSGT00390000016068
Salmoninae_a	ANCESTRAL SPECIES	132															ENSGT00940000159833	ENSGT00390000012547.a.f.a ##22	ENSGT00940000161170.c.g	ENSGT00390000009995	ENSGT01080000257410.A.f.l	ENSGT00940000157540.B	ENSGT00940000156291.e	ENSGT00940000157771	ENSGT00940000156682.e.a	ENSGT00970000193421.C.b	ENSGT00940000154876.a.a.a.a	ENSGT00940000154876.a.a.a.b	ENSGT00950000182940.b.a.a.g.b	ENSGT00940000154146.b.b.b	ENSGT00940000154146.b.a.f	ENSGT00940000155645.i.b	ENSGT00390000015400
Oncorhynchus	DUPLICATION
Oncorhynchus	DUPLICATION
Oncorhynchus	ANCESTRAL SPECIES																	ENSGT00390000012547.a.f.a.a.a ##22
Oncorhynchus_a	ANCESTRAL SPECIES																	ENSGT00390000012547.a.f.a.a.a ##22
Chinook salmon	MODERN SPECIES	1351														tmed3 (ENSOTSG00005039607)	IDH2 (ENSOTSG00005039606) ##22	IDH2 (ENSOTSG00005039605) ##22
Rainbow trout	MODERN SPECIES	27	ENSOMYG00000068541	ENSOMYG00000076661	galr1b (ENSOMYG00000051493)	ENSOMYG00000072160	ENSOMYG00000064636	ENSOMYG00000069251	ENSOMYG00000076411	ENSOMYG00000076057	ENSOMYG00000038387	ENSOMYG00000036456	ENSOMYG00000068393	ENSOMYG00000063010	ENSOMYG00000073691	anxa2b (ENSOMYG00000056946)	ENSOMYG00000008458	ENSOMYG00000053311 ##22	ENSOMYG00000051877	ENSOMYG00000072130	ENSOMYG00000055705	ENSOMYG00000031153	ENSOMYG00000076770	ENSOMYG00000031193	ENSOMYG00000058801	ENSOMYG00000057627	ENSOMYG00000073348	ENSOMYG00000058992	igf1rb (ENSOMYG00000066583)	ENSOMYG00000075368	ENSOMYG00000065514	ENSOMYG00000030972	ENSOMYG00000031107
Oncorhynchus	ANCESTRAL SPECIES																	ENSGT00390000012547.a.f.a.a.b ##22
Rainbow trout	MODERN SPECIES	18															ENSOMYG00000023342	ENSOMYG00000023383 ##22	ENSOMYG00000067538	ENSOMYG00000064992	ENSOMYG00000070692	ENSOMYG00000073048	ENSOMYG00000072148	ENSOMYG00000068422	ENSOMYG00000077155	ENSOMYG00000055490	ENSOMYG00000059720	ENSOMYG00000048578	igf1rb (ENSOMYG00000059870)	ENSOMYG00000029587	ENSOMYG00000049508	ENSOMYG00000071477	ENSOMYG00000059839
Oncorhynchus_a	ANCESTRAL SPECIES																	ENSGT00390000012547.a.f.a.a.b ##22
Chinook salmon	MODERN SPECIES	1351															IDH2 (ENSOTSG00005039605) ##22	IDH2 (ENSOTSG00005039606) ##22	tmed3 (ENSOTSG00005039607)
Oncorhynchus	ANCESTRAL SPECIES	120																ENSGT00390000012547.a.f.a.b ##22	ENSGT00940000161170.c.h	ENSGT00390000009995	ENSGT01080000257410.A.f.l	ENSGT00940000157540.B	ENSGT00940000156291.e.e	ENSGT00940000157771	ENSGT00940000156682.e.a	ENSGT00970000193421.C.b	ENSGT00940000154876.a.a.a.a	ENSGT00940000154876.a.a.a.b	ENSGT00950000182940.b.a.a.g.b	ENSGT00940000154146.b.b.b.h.a	ENSGT00940000154146.b.a.f	ENSGT00940000155645.i.b	ENSGT00390000015400
Oncorhynchus_a	ANCESTRAL SPECIES	159																ENSGT00390000012547.a.f.a.b ##22	ENSGT00940000161170.c.h	ENSGT00390000009995	ENSGT01080000257410.A.f.l	ENSGT00940000154856.A.b.b	ENSGT00940000157540.B	ENSGT00940000156291.e.e	ENSGT00940000157771	ENSGT00940000156682.e.a	ENSGT00970000193421.C.b	ENSGT00940000154876.a.a.a.a	ENSGT00940000154876.a.a.a.b	ENSGT00950000182940.b.a.a.g.b	ENSGT00940000154146.b.b.b.h.a	ENSGT00940000154146.b.a.f	ENSGT00940000155645.i.b
Coho salmon	DUPLICATION
Coho salmon	MODERN SPECIES	249																IDH2 (ENSOKIG00005028164) ##22	ENSOKIG00005029698
Coho salmon	MODERN SPECIES	32	WDR88 (ENSOKIG00005028498)	GPATCH1 (ENSOKIG00005028584)	slc7a10a (ENSOKIG00005029398)	rhpn2 (ENSOKIG00005030017)	cep89 (ENSOKIG00005030833)	zgc:165481 (ENSOKIG00005030907)	ENSOKIG00005030912	SLC7A9 (ENSOKIG00005031038)	nudt19 (ENSOKIG00005031966)	RGS9BP (ENSOKIG00005032016)	ENSOKIG00005032052	nip7 (ENSOKIG00005032142)	cog8 (ENSOKIG00005032158)	NOB1 (ENSOKIG00005032188)	WDR59 (ENSOKIG00005032279)	IDH2 (ENSOKIG00005033249) ##22	ENSOKIG00005033461	ENSOKIG00005033496	SLCO3A1 (ENSOKIG00005033534)	ENSOKIG00005033635	ENSOKIG00005033646	ENSOKIG00005033656	ENSOKIG00005033731	LRRC28 (ENSOKIG00005034015)	igf1rb (ENSOKIG00005034209)	AP3S2 (ENSOKIG00005037956)	ANPEP (ENSOKIG00005038124)	ANPEP (ENSOKIG00005039352)	sv2ba (ENSOKIG00005040233)	ENSOKIG00005040377	ENSOKIG00005040392
Salmo	DUPLICATION
Salmo	ANCESTRAL SPECIES	495																ENSGT00390000012547.a.f.a.c ##22	ENSGT00940000161170.c.g
River trout	MODERN SPECIES	244																IDH2 (ENSSTUG00000045246) ##22	ZNF710 (ENSSTUG00000045223)	SERF2 (ENSSTUG00000045215)	ENSSTUG00000045199
Atlantic salmon	MODERN SPECIES	18	slc7a10a (ENSSSAG00000094872)	rhpn2 (ENSSSAG00000045784)	zgc:165481 (ENSSSAG00000098118)	ENSSSAG00000054334	bat1 (ENSSSAG00000058577)	SLC7A9 (ENSSSAG00000107384)	ENSSSAG00000116915	ENSSSAG00000083527	ENSSSAG00000039232	zdhhc7 (ENSSSAG00000094568)	ENSSSAG00000104125	ENSSSAG00000058544	nip7 (ENSSSAG00000058519)	cog8 (ENSSSAG00000045757)	ENSSSAG00000045763	ENSSSAG00000083888 ##22	ENSSSAG00000087405	ENSSSAG00000121447	ENSSSAG00000112586	ENSSSAG00000110224	ENSSSAG00000098759	ENSSSAG00000058434	ENSSSAG00000058440	ENSSSAG00000085170	ENSSSAG00000058400	ENSSSAG00000117097	igf1rb (ENSSSAG00000086371)	ENSSSAG00000089249	ENSSSAG00000083118	ENSSSAG00000046258	ENSSSAG00000101377
Salmo	ANCESTRAL SPECIES	129	ENSGT00730000111020.a.e	ENSGT00420000029858.n.b	ENSGT00940000156370.eb	ENSGT00940000153725.a.b.a.e	ENSGT00940000156519.o.e	ENSGT00940000158316.b	ENSGT00950000182971.A.g	ENSGT00390000015893.g.a	ENSGT00390000015857.g	ENSGT00420000029858.m	ENSGT00940000153725.a.b.a.f	ENSGT00390000015893.g.b	ENSGT00390000015857.h	ENSGT00940000157600	ENSGT00940000159833	ENSGT00390000012547.a.f.a.d ##22	ENSGT00940000161170.c.h	ENSGT00940000157771.w	ENSGT00940000156682.e.a.g
Atlantic salmon	MODERN SPECIES	2	ENSSSAG00000082943	slc7a10a (ENSSSAG00000116744)	cep89 (ENSSSAG00000009545)	zgc:165481 (ENSSSAG00000096121)	ENSSSAG00000062943	ENSSSAG00000020172	SLC7A9 (ENSSSAG00000085648)	ENSSSAG00000084631	ENSSSAG00000044823	ENSSSAG00000038560	nip7 (ENSSSAG00000038347)	ENSSSAG00000111816	ENSSSAG00000038152	ENSSSAG00000085068	TMED3 (ENSSSAG00000007730)	ENSSSAG00000063682 ##22	ENSSSAG00000058526	ENSSSAG00000060781	ENSSSAG00000070808	ENSSSAG00000063013	ENSSSAG00000099278	ENSSSAG00000058086	ENSSSAG00000113240	ENSSSAG00000069739	ENSSSAG00000046345	ENSSSAG00000099635	ENSSSAG00000102551	ENSSSAG00000120087	ENSSSAG00000104310	ENSSSAG00000119799	RL7A (ENSSSAG00000070973)
River trout	MODERN SPECIES	3	PDPR (ENSSTUG00000034274)	glg1b (ENSSTUG00000031813)	NOB1 (ENSSTUG00000031718)	cog8 (ENSSTUG00000031652)	nip7 (ENSSTUG00000031625)	ENSSTUG00000031599	ENSSTUG00000031549	zdhhc7 (ENSSTUG00000031529)	zdhhc7 (ENSSTUG00000031446)	ENSSTUG00000031369	nip7 (ENSSTUG00000017490)	cog8 (ENSSTUG00000017420)	ENSSTUG00000017406	WDR59 (ENSSTUG00000017297)	tmed3 (ENSSTUG00000017283)	IDH2 (ENSSTUG00000017237) ##22	ZNF710 (ENSSTUG00000017219)	SERF2 (ENSSTUG00000017195)	ENSSTUG00000017191	LRRC28 (ENSSTUG00000017182)	IGF1R (ENSSTUG00000011980)	ap3s2 (ENSSTUG00000011811)	RGS9BP (ENSSTUG00000011805)	SLC7A9 (ENSSTUG00000011793)	nudt19 (ENSSTUG00000011787)	nudt19 (ENSSTUG00000011774)	zgc:165481 (ENSSTUG00000011768)	cep89 (ENSSTUG00000011701)	ENSSTUG00000011680	rhpn2 (ENSSTUG00000010864)	SMAD6 (ENSSTUG00000010836)
Northern pike	MODERN SPECIES	16	ENSELUG00000026547	ENSELUG00000027461	cebpa (ENSELUG00000018222)	gpatch1 (ENSELUG00000018195)	WDR88 (ENSELUG00000018175)	ENSELUG00000024795	lrp3 (ENSELUG00000018159)	slc7a10a (ENSELUG00000018150)	rhpn2 (ENSELUG00000000734)	cep89 (ENSELUG00000018075)	zgc:165481 (ENSELUG00000001348)	SLC7A9 (ENSELUG00000018001)	nudt19 (ENSELUG00000017976)	RASGRF1 (ENSELUG00000017954)	si:ch211-107o10.3 (ENSELUG00000017852)	IDH2 (ENSELUG00000017764) ##22	ZNF710 (ENSELUG00000017700)	SEMA4B (ENSELUG00000017664)	ENSELUG00000017616	serf2b (ENSELUG00000017587)	ENSELUG00000017549	ENSELUG00000017531	gnrhr2 (ENSELUG00000017507)	SLCO3A1 (ENSELUG00000000685)	ENSELUG00000017455	ENSELUG00000017428	ENSELUG00000017391	ENSELUG00000001388	ENSELUG00000017279	ENSELUG00000026023	igf1rb (ENSELUG00000017203)
Euteleosteomorpha	ANCESTRAL SPECIES	1	ENSGT00940000163793.B	ENSGT00390000001338	ENSGT00940000163793.A.b	ENSGT00390000002443	ENSGT00940000172424	ENSGT00940000158357	ENSGT00390000016025.b	ENSGT00940000158534.a.b	ENSGT00390000018044.a	ENSGT00940000156346.c.b	ENSGT00940000156800	ENSGT00940000160227.g	ENSGT00940000157599.c.a	ENSGT00390000012355.B.a	ENSGT00940000165857.b	ENSGT00390000012547.a.f.b ##22	ENSGT00940000161170.d	ENSGT00940000154870.D.a.a	ENSGT00940000165251	ENSGT01000000215232	ENSGT00940000165481.a.a	ENSGT00940000165481.a.b	ENSGT00940000165481.b	ENSGT00940000164943.a.a	ENSGT00390000014273.a	ENSGT01050000244841.A.a.b.qb.b	ENSGT00950000182920.a	ENSGT00940000164158.B	ENSGT01080000257410.A.f.m	ENSGT01030000234535.F.a	ENSGT00730000111392
Acanthomorphata	ANCESTRAL SPECIES	4	ENSGT00940000163793.B	ENSGT00390000001338	ENSGT00940000163793.A.b	ENSGT00390000002443	ENSGT00940000172424	ENSGT00940000158357	ENSGT00390000016025.b	ENSGT00940000158534.a.b	ENSGT00390000018044.a	ENSGT00940000156346.c.b	ENSGT00940000156800	ENSGT00940000160227.g	ENSGT00940000157599.c.a	ENSGT00390000012355.B.a	ENSGT00940000165857.b	ENSGT00390000012547.a.f.b ##22	ENSGT00940000161170.d	ENSGT00940000154870.D.a.a	ENSGT00940000165251	ENSGT00940000165481.b	ENSGT00940000164943.a.a	ENSGT00390000014273.a	ENSGT01050000244841.A.a.b.qb.b	ENSGT01050000244841.A.a.b.rb	ENSGT00940000164158.B	ENSGT01080000257410.A.f.m	ENSGT01030000234535.F.a	ENSGT00730000111392	ENSGT00980000203452	ENSGT00940000155888	ENSGT00940000174630
Cod	MODERN SPECIES	22	pstpip1a (ENSGMOG00000006728)	tspan3a (ENSGMOG00000006716)	si:dkey-24l11.2 (ENSGMOG00000006696)	ch25hl1.1 (ENSGMOG00000006693)	ENSGMOG00000006679	ENSGMOG00000030860	ENSGMOG00000006602	ENSGMOG00000023687	ENSGMOG00000006500	ENSGMOG00000006486	ENSGMOG00000016300	ENSGMOG00000016413	ENSGMOG00000016431	ENSGMOG00000016711	ENSGMOG00000023312	idh2 (ENSGMOG00000013141) ##22	znf710a (ENSGMOG00000029537)	sema4ba (ENSGMOG00000013124)	zgc:162879 (ENSGMOG00000013096)	ENSGMOG00000013077	ENSGMOG00000013055	pex11a (ENSGMOG00000025865)	ENSGMOG00000013043	slco3a1a (ENSGMOG00000013029)	st8sia2 (ENSGMOG00000013018)	fam174b (ENSGMOG00000023113)	ENSGMOG00000034902	chd2 (ENSGMOG00000002890)	rgma (ENSGMOG00000032458)	lysmd4 (ENSGMOG00000026827)	nr2f2 (ENSGMOG00000015515)
Euacanthomorphacea	ANCESTRAL SPECIES	7	ENSGT00940000163793.B	ENSGT00390000001338	ENSGT00940000163793.A.b	ENSGT00390000002443	ENSGT00940000172424	ENSGT00940000158357	ENSGT00390000016025.b	ENSGT00940000158534.a.b	ENSGT00390000018044.a	ENSGT00940000156346.c.b	ENSGT00940000156800	ENSGT00940000160227.g	ENSGT00940000157599.c.a	ENSGT00390000012355.B.a	ENSGT00940000165857.b	ENSGT00390000012547.a.f.b ##22	ENSGT00940000161170.d	ENSGT00940000154870.D.a.a	ENSGT00940000165251	ENSGT00940000165481.b	ENSGT00940000164943.a.a	ENSGT00390000014273.a	ENSGT01050000244841.A.a.b.qb.b	ENSGT00940000164158.B	ENSGT01080000257410.A.f.m	ENSGT01030000234535.F.a	ENSGT00730000111392	ENSGT00980000203452	ENSGT00940000155888	ENSGT00940000174630	ENSGT00950000183112.a
Pinecone sodierfish	MODERN SPECIES	20	ch25hl1.2 (ENSMMDG00005014863)	si:dkey-24l11.2 (ENSMMDG00005014865)	ch25hl1.1 (ENSMMDG00005014869)	kti12 (ENSMMDG00005014871)	ENSMMDG00005014875	ENSMMDG00005014876	slc28a1 (ENSMMDG00005014889)	ENSMMDG00005015675	ENSMMDG00005015679	FRMD5 (ENSMMDG00005015691)	ENSMMDG00005000284	ctsh (ENSMMDG00005000723)	RASGRF1 (ENSMMDG00005000764)	ENSMMDG00005000769	ENSMMDG00005000770	idh2 (ENSMMDG00005000828) ##22	znf710a (ENSMMDG00005001714)	sema4ba (ENSMMDG00005001718)	zgc:162879 (ENSMMDG00005001728)	ENSMMDG00005001741	ENSMMDG00005001751	pex11a (ENSMMDG00005001753)	gnrhr4 (ENSMMDG00005001760)	si:dkeyp-59c12.1 (ENSMMDG00005001765)	slco3a1a (ENSMMDG00005001781)	st8sia2 (ENSMMDG00005001790)	fam174b (ENSMMDG00005001801)	chd2 (ENSMMDG00005002091)	rgma (ENSMMDG00005012926)	ENSMMDG00005012928	lysmd4 (ENSMMDG00005012929)
Percomorphaceae	ANCESTRAL SPECIES	4	ENSGT00940000163793.B	ENSGT00390000001338	ENSGT00940000163793.A.b	ENSGT00390000002443	ENSGT00940000172424	ENSGT00940000158357	ENSGT00390000016025.b	ENSGT00940000158534.a.b	ENSGT00390000018044.a	ENSGT00940000156346.c.b	ENSGT00940000156800	ENSGT00940000160227.g	ENSGT00940000157599.c.a	ENSGT00390000012355.B.a	ENSGT00940000165857.b	ENSGT00390000012547.a.f.b ##22	ENSGT00940000161170.d	ENSGT00940000154870.D.a.a	ENSGT00940000165251	ENSGT00940000165481.b	ENSGT00940000164943.a.a	ENSGT00390000014273.a	ENSGT01050000244841.A.a.b.qb.b	ENSGT00940000164158.B	ENSGT01080000257410.A.f.m	ENSGT01030000234535.F.a	ENSGT00730000111392	ENSGT00980000203452	ENSGT00940000155888	ENSGT00940000174630	ENSGT00950000183112.a
Tiger tail seahorse	MODERN SPECIES	311	hal (ENSHCOG00000011530)	FGD6 (ENSHCOG00000011545)	nr2c1 (ENSHCOG00000011584)	tmcc3 (ENSHCOG00000011605)	ENSHCOG00000011620	ENSHCOG00000011631	ENSHCOG00000011649	ENSHCOG00000011678	ENSHCOG00000011706	parietopsin (ENSHCOG00000011717)	NT5DC3 (ENSHCOG00000011744)	hsp90b1 (ENSHCOG00000011791)	ENSHCOG00000011864	hbp1 (ENSHCOG00000011877)	GPR22 (ENSHCOG00000011890)	idh2 (ENSHCOG00000011933) ##22	znf710a (ENSHCOG00000011956)	sema4ba (ENSHCOG00000011978)	zgc:162879 (ENSHCOG00000012026)	ENSHCOG00000012050	ENSHCOG00000012065	pex11a (ENSHCOG00000012078)	slco3a1a (ENSHCOG00000012097)	kif5c (ENSHCOG00000012129)	kif5c (ENSHCOG00000012166)
Percomorphaceae_B	ANCESTRAL SPECIES	5	ENSGT00940000163793.B	ENSGT00390000001338	ENSGT00940000163793.A.b	ENSGT00390000002443	ENSGT00940000172424	ENSGT00940000158357	ENSGT00390000016025.b	ENSGT00940000158534.a.b	ENSGT00390000018044.a	ENSGT00940000156346.c.b	ENSGT00940000156800	ENSGT00940000160227.g	ENSGT00940000157599.c.a	ENSGT00390000012355.B.a	ENSGT00940000165857.b	ENSGT00390000012547.a.f.b ##22	ENSGT00940000161170.d	ENSGT00940000154870.D.a.a	ENSGT00940000165251	ENSGT00940000165481.b	ENSGT00940000164943.a.a	ENSGT00390000014273.a	ENSGT01050000244841.A.a.b.qb.b	ENSGT00940000164158.B	ENSGT01080000257410.A.f.m	ENSGT01030000234535.F.a	ENSGT00730000111392	ENSGT00940000155888	ENSGT00940000174630	ENSGT00950000183112.a	ENSGT00940000160583
Ovalentaria	ANCESTRAL SPECIES	7	ENSGT00940000163793.B	ENSGT00390000001338	ENSGT00940000163793.A.b	ENSGT00390000002443	ENSGT00940000172424	ENSGT00940000158357	ENSGT00390000016025.b	ENSGT00940000158534.a.b	ENSGT00390000018044.a	ENSGT00940000156346.c.b	ENSGT00940000156800.j	ENSGT00940000160227.g	ENSGT00940000157599.c.a	ENSGT00390000012355.B.a	ENSGT00940000165857.b	ENSGT00390000012547.a.f.b ##22	ENSGT00940000161170.d	ENSGT00940000154870.D.a.a	ENSGT00940000165251	ENSGT00940000165481.b	ENSGT00940000164943.a.a	ENSGT00390000014273.a	ENSGT01050000244841.A.a.b.qb.b	ENSGT00940000164158.B	ENSGT01080000257410.A.f.m	ENSGT01030000234535.F.a	ENSGT00730000111392	ENSGT00940000155888	ENSGT00940000174630	ENSGT00950000183112.a	ENSGT00940000160583
Atherinomorphae	ANCESTRAL SPECIES	5	ENSGT00940000163793.B	ENSGT00390000001338	ENSGT00940000163793.A.b	ENSGT00390000002443	ENSGT00940000172424	ENSGT00940000158357	ENSGT00390000016025.b	ENSGT00940000158534.a.b	ENSGT00390000018044.a	ENSGT00940000156346.c.b	ENSGT00940000156800.j	ENSGT00940000160227.g	ENSGT00940000157599.c.a	ENSGT00390000012355.B.a	ENSGT00940000165857.b	ENSGT00390000012547.a.f.b ##22	ENSGT00940000161170.d	ENSGT00940000154870.D.a.a	ENSGT00940000165251	ENSGT00940000165481.b	ENSGT00940000164943.a.a	ENSGT00390000014273.a	ENSGT01050000244841.A.a.b.qb.b	ENSGT00940000164158.B	ENSGT01080000257410.A.f.m	ENSGT01030000234535.F.a	ENSGT00730000111392	ENSGT00940000155888	ENSGT00940000174630	ENSGT00950000183112.a	ENSGT00940000160583
Cyprinodontiformes	ANCESTRAL SPECIES	6	ENSGT00940000163793.B	ENSGT00390000001338	ENSGT00940000163793.A.b	ENSGT00390000002443	ENSGT00940000172424	ENSGT00940000158357	ENSGT00390000016025.b	ENSGT00940000158534.a.b	ENSGT00390000018044.a	ENSGT00940000156346.c.b	ENSGT00940000156800.j	ENSGT00940000160227.g	ENSGT00940000157599.c.a	ENSGT00390000012355.B.a	ENSGT00940000165857.b	ENSGT00390000012547.a.f.b ##22	ENSGT00940000161170.d	ENSGT00940000154870.D.a.a	ENSGT00940000165251	ENSGT00940000165481.b	ENSGT00940000164943.a.a	ENSGT00390000014273.a	ENSGT01050000244841.A.a.b.qb.b	ENSGT00940000164158.B	ENSGT01080000257410.A.f.m	ENSGT01030000234535.F.a	ENSGT00730000111392	ENSGT00940000155888	ENSGT00940000174630	ENSGT00950000183112.a	ENSGT00940000160583
Aplocheiloidei	ANCESTRAL SPECIES	1	ENSGT00940000163793.B	ENSGT00390000001338	ENSGT00940000163793.A.b	ENSGT00390000002443	ENSGT00940000172424	ENSGT00940000158357	ENSGT00390000016025.b	ENSGT00940000158534.a.b	ENSGT00390000018044.a	ENSGT00940000156346.c.b	ENSGT00940000156800.j	ENSGT00940000160227.g	ENSGT00940000157599.c.a	ENSGT00390000012355.B.a	ENSGT00940000165857.b	ENSGT00390000012547.a.f.b ##22	ENSGT00940000161170.d	ENSGT00940000154870.D.a.a	ENSGT00940000165251	ENSGT00940000165481.b	ENSGT00940000164943.a.a.m	ENSGT00390000014273.a	ENSGT01050000244841.A.a.b.qb.b	ENSGT00940000164158.B	ENSGT01080000257410.A.f.m	ENSGT01030000234535.F.a	ENSGT00730000111392	ENSGT00940000155888	ENSGT00950000183112.a	ENSGT00940000174630	ENSGT00940000160583
Mangrove rivulus	MODERN SPECIES	6	tspan3a (ENSKMAG00000016860)	ch25hl1.2 (ENSKMAG00000016854)	si:dkey-24l11.2 (ENSKMAG00000016828)	ch25hl1.1 (ENSKMAG00000016820)	kti12 (ENSKMAG00000016792)	ENSKMAG00000016780	znf592 (ENSKMAG00000016765)	slc28a1 (ENSKMAG00000016727)	ENSKMAG00000016695	FRMD5 (ENSKMAG00000016657)	BLM (ENSKMAG00000016608)	ctsh (ENSKMAG00000016554)	RASGRF1 (ENSKMAG00000016454)	ENSKMAG00000016413	ENSKMAG00000016392	idh2 (ENSKMAG00000016352) ##22	znf710a (ENSKMAG00000016329)	sema4ba (ENSKMAG00000016286)	zgc:162879 (ENSKMAG00000016246)	ENSKMAG00000016184	ENSKMAG00000016150	pex11a (ENSKMAG00000016138)	gnrhr4 (ENSKMAG00000016030)	si:dkeyp-59c12.1 (ENSKMAG00000015976)	slco3a1a (ENSKMAG00000015955)	st8sia2 (ENSKMAG00000015933)	fam174b (ENSKMAG00000015922)	chd2 (ENSKMAG00000015849)	ENSKMAG00000015812	rgma (ENSKMAG00000015791)	ENSKMAG00000015760
Turquoise killifish	MODERN SPECIES	1622	tspan3a (ENSNFUG00015006630)	ch25hl1.2 (ENSNFUG00015006633)	Nfu_g_1_008369 (ENSNFUG00015006638)	ch25hl1.1 (ENSNFUG00015006641)	kti12 (ENSNFUG00015006644)	ENSNFUG00015006649	ZNF592 (ENSNFUG00015006656)	slc28a1 (ENSNFUG00015006670)	ENSNFUG00015006696	ENSNFUG00015006701	ENSNFUG00015006722	BLM (ENSNFUG00015006913)	RASGRF1 (ENSNFUG00015007625)	ENSNFUG00015007715	ENSNFUG00015007734	IDH2 (ENSNFUG00015007968) ##22	znf710a (ENSNFUG00015009332)	ENSNFUG00015009338	sema4ba (ENSNFUG00015009372)	Nfu_g_1_008252 (ENSNFUG00015009534)	Nfu_g_1_008448 (ENSNFUG00015009590)	ENSNFUG00015009647	ENSNFUG00015009617	PEX11A (ENSNFUG00015009659)	COMMD6 (ENSNFUG00015009670)	ENSNFUG00015009682	gnrhr4 (ENSNFUG00015009691)	si:dkeyp-59c12.1 (ENSNFUG00015009720)	SLCO3A1 (ENSNFUG00015009739)	ST8SIA2 (ENSNFUG00015009804)	fam174b (ENSNFUG00015009833)
Cyprinodontoidei	ANCESTRAL SPECIES	7	ENSGT00940000163793.B	ENSGT00390000001338	ENSGT00940000163793.A.b	ENSGT00390000002443	ENSGT00940000172424	ENSGT00940000158357	ENSGT00390000016025.b	ENSGT00940000158534.a.b	ENSGT00390000018044.a	ENSGT00940000156346.c.b	ENSGT00940000156800.j	ENSGT00940000160227.g	ENSGT00940000157599.c.a	ENSGT00390000012355.B.a	ENSGT00940000165857.b	ENSGT00390000012547.a.f.b ##22	ENSGT00940000161170.d	ENSGT00940000154870.D.a.a	ENSGT00940000165251	ENSGT00940000165481.b	ENSGT00940000164943.a.a	ENSGT00390000014273.a	ENSGT01050000244841.A.a.b.qb.b	ENSGT00940000164158.B	ENSGT01080000257410.A.f.m	ENSGT01030000234535.F.a	ENSGT00730000111392	ENSGT00940000155888	ENSGT00940000174630	ENSGT00950000183112.a	ENSGT00940000160583
Poeciliinae	ANCESTRAL SPECIES	3	ENSGT00940000163793.B	ENSGT00390000001338	ENSGT00940000163793.A.b	ENSGT00390000002443	ENSGT00940000172424	ENSGT00940000158357	ENSGT00390000016025.b	ENSGT00940000158534.a.b	ENSGT00390000018044.a	ENSGT00940000156346.c.b	ENSGT00940000156800.j	ENSGT00940000160227.g	ENSGT00940000157599.c.a	ENSGT00390000012355.B.a	ENSGT00940000165857.b	ENSGT00390000012547.a.f.b ##22	ENSGT00940000161170.d	ENSGT00940000154870.D.a.a	ENSGT00940000165251	ENSGT00940000165481.b	ENSGT00940000164943.a.a	ENSGT00390000014273.a	ENSGT01050000244841.A.a.b.qb.b	ENSGT00940000164158.B	ENSGT01080000257410.A.f.m	ENSGT01030000234535.F.a	ENSGT00730000111392	ENSGT00940000155888	ENSGT00940000174630	ENSGT00950000183112.a	ENSGT00940000160583
Poecilia	ANCESTRAL SPECIES	5	ENSGT00940000163793.B	ENSGT00390000001338	ENSGT00940000163793.A.b	ENSGT00390000002443	ENSGT00940000172424	ENSGT00940000158357	ENSGT00390000016025.b	ENSGT00940000158534.a.b	ENSGT00390000018044.a	ENSGT00940000156346.c.b	ENSGT00940000156800.j	ENSGT00940000160227.g	ENSGT00940000157599.c.a	ENSGT00390000012355.B.a	ENSGT00940000165857.b	ENSGT00390000012547.a.f.b ##22	ENSGT00940000161170.d	ENSGT00940000154870.D.a.a	ENSGT00940000165251	ENSGT00940000165481.b	ENSGT00940000164943.a.a	ENSGT00390000014273.a	ENSGT01050000244841.A.a.b.qb.b	ENSGT00940000164158.B	ENSGT01080000257410.A.f.m	ENSGT01030000234535.F.a	ENSGT00730000111392	ENSGT00940000155888	ENSGT00940000174630	ENSGT00950000183112.a	ENSGT00940000160583
NAME_6	ANCESTRAL SPECIES	38	ENSGT00940000163793.B	ENSGT00390000001338	ENSGT00940000163793.A.b	ENSGT00390000002443	ENSGT00940000172424	ENSGT00940000158357	ENSGT00390000016025.b	ENSGT00940000158534.a.b	ENSGT00390000018044.a	ENSGT00940000156346.c.b	ENSGT00940000156800.j	ENSGT00940000160227.g.c	ENSGT00940000157599.c.a	ENSGT00390000012355.B.a	ENSGT00940000165857.b	ENSGT00390000012547.a.f.b ##22	ENSGT00940000161170.d	ENSGT00940000154870.D.a.a	ENSGT00940000165251	ENSGT00940000165481.b	ENSGT00940000164943.a.a	ENSGT00390000014273.a	ENSGT01050000244841.A.a.b.qb.b	ENSGT00940000164158.B	ENSGT01080000257410.A.f.m	ENSGT01030000234535.F.a	ENSGT00730000111392	ENSGT00940000155888	ENSGT00950000183112.a	ENSGT00940000160583	ENSGT00940000157540.A
Amazon molly	MODERN SPECIES	441	ch25hl1.2 (ENSPFOG00000019897)	si:dkey-24l11.2 (ENSPFOG00000003642)	kti12 (ENSPFOG00000003721)	ch25hl1.1 (ENSPFOG00000003700)	ENSPFOG00000023797	znf592 (ENSPFOG00000003802)	slc28a1 (ENSPFOG00000003979)	ENSPFOG00000004343	ENSPFOG00000004466	FRMD5 (ENSPFOG00000004591)	ENSPFOG00000005059	ctsh (ENSPFOG00000024227)	RASGRF1 (ENSPFOG00000005376)	ENSPFOG00000005904	ENSPFOG00000019898	idh2 (ENSPFOG00000005967) ##22	znf710a (ENSPFOG00000006142)	sema4ba (ENSPFOG00000006184)	zgc:162879 (ENSPFOG00000006354)	ENSPFOG00000006489	ENSPFOG00000006571	pex11a (ENSPFOG00000006711)	ENSPFOG00000006748	ENSPFOG00000006780	si:dkeyp-59c12.1 (ENSPFOG00000006808)	slco3a1a (ENSPFOG00000006866)	st8sia2 (ENSPFOG00000006977)	fam174b (ENSPFOG00000007045)	chd2 (ENSPFOG00000007050)	rgma (ENSPFOG00000007056)	lysmd4 (ENSPFOG00000007081)
Sailfin molly	MODERN SPECIES	575												ENSPLAG00000020981	RASGRF1 (ENSPLAG00000020948)	ENSPLAG00000020856	ENSPLAG00000020853	idh2 (ENSPLAG00000020843) ##22	znf710a (ENSPLAG00000020833)	sema4ba (ENSPLAG00000020782)	zgc:162879 (ENSPLAG00000020643)	ENSPLAG00000020636	pex11a (ENSPLAG00000020601)
Guppy	MODERN SPECIES	458	si:dkey-24l11.2 (ENSPREG00000008065)	ch25hl1.1 (ENSPREG00000008059)	ch25hl1.1 (ENSPREG00000008051)	kti12 (ENSPREG00000008036)	ENSPREG00000008028	znf592 (ENSPREG00000007979)	slc28a1 (ENSPREG00000007866)	ENSPREG00000007837	ENSPREG00000007813	ENSPREG00000007770	ENSPREG00000007715	ctsh (ENSPREG00000007676)	RASGRF1 (ENSPREG00000007601)	ENSPREG00000007587	ENSPREG00000007550	idh2 (ENSPREG00000006801) ##22	znf710a (ENSPREG00000006685)	sema4ba (ENSPREG00000006649)	ENSPREG00000006636	ENSPREG00000006618	ENSPREG00000006598	pex11a (ENSPREG00000006584)	gnrhr4 (ENSPREG00000006577)	si:dkeyp-59c12.1 (ENSPREG00000006561)	slco3a1a (ENSPREG00000006530)	st8sia2 (ENSPREG00000006520)	fam174b (ENSPREG00000006508)	ENSPREG00000006495	ENSPREG00000006449	ENSPREG00000006431	ENSPREG00000006419
Platyfish	MODERN SPECIES	11	ch25hl1.2 (ENSXMAG00000003017)	si:dkey-24l11.2 (ENSXMAG00000003014)	kti12 (ENSXMAG00000026718)	ch25hl1.1 (ENSXMAG00000020321)	ENSXMAG00000003009	znf592 (ENSXMAG00000003005)	slc28a1 (ENSXMAG00000002988)	ENSXMAG00000026513	ENSXMAG00000002975	FRMD5 (ENSXMAG00000002966)	ENSXMAG00000002951	ctsh (ENSXMAG00000002937)	RASGRF1 (ENSXMAG00000002892)	ENSXMAG00000002886	ENSXMAG00000020319	idh2 (ENSXMAG00000002871) ##22	znf710a (ENSXMAG00000004943)	sema4ba (ENSXMAG00000002861)	zgc:162879 (ENSXMAG00000002846)	ENSXMAG00000002837	ENSXMAG00000002826	pex11a (ENSXMAG00000002819)	gnrhr4 (ENSXMAG00000002815)	si:dkeyp-59c12.1 (ENSXMAG00000021988)	slco3a1a (ENSXMAG00000002787)	st8sia2 (ENSXMAG00000002780)	fam174b (ENSXMAG00000002779)	chd2 (ENSXMAG00000002707)	ENSXMAG00000021398	rgma (ENSXMAG00000002704)	lysmd4 (ENSXMAG00000002703)
NAME_4	ANCESTRAL SPECIES	39	ENSGT00940000163793.B	ENSGT00390000001338	ENSGT00940000163793.A.b	ENSGT00390000002443	ENSGT00940000172424	ENSGT00940000158357	ENSGT00390000016025.b	ENSGT00940000158534.a.b	ENSGT00390000018044.a	ENSGT00940000156346.c.b	ENSGT00940000156800.j	ENSGT00940000160227.g	ENSGT00940000157599.c.a	ENSGT00390000012355.B.a	ENSGT00940000165857.b	ENSGT00390000012547.a.f.b ##22	ENSGT00940000161170.d	ENSGT00940000154870.D.a.a	ENSGT00940000165251	ENSGT00940000165481.b	ENSGT00940000164943.a.a	ENSGT00390000014273.a	ENSGT01050000244841.A.a.b.qb.b	ENSGT00940000164158.B	ENSGT01080000257410.A.f.m	ENSGT01030000234535.F.a	ENSGT00730000111392	ENSGT00940000155888	ENSGT00940000174630	ENSGT00950000183112.a	ENSGT00940000160583
Sheepshead minnow	MODERN SPECIES	1096														ENSCVAG00000000374	ENSCVAG00000014647	idh2 (ENSCVAG00000014620) ##22	znf710a (ENSCVAG00000014579)	sema4ba (ENSCVAG00000014520)	zgc:162879 (ENSCVAG00000014510)	ENSCVAG00000014501	ENSCVAG00000014490	pex11a (ENSCVAG00000014481)
Mummichog	MODERN SPECIES	2288	ENSFHEG00000002384	ch25hl1.1 (ENSFHEG00000002385)	kti12 (ENSFHEG00000002415)	ENSFHEG00000002429	slc28a1 (ENSFHEG00000002450)	ENSFHEG00000002463	ENSFHEG00000002469	ENSFHEG00000002506	FRMD5 (ENSFHEG00000002532)	ENSFHEG00000002553	ctsh (ENSFHEG00000002606)	RASGRF1 (ENSFHEG00000002639)	ENSFHEG00000002650	ENSFHEG00000002663	znf710a (ENSFHEG00000002670)	idh2 (ENSFHEG00000002709) ##22	ENSFHEG00000002717	sema4ba (ENSFHEG00000002730)	ENSFHEG00000002735
Oryzias	ANCESTRAL SPECIES	16	ENSGT00940000163793.B	ENSGT00390000001338	ENSGT00940000163793.A.b	ENSGT00390000002443	ENSGT00940000172424	ENSGT00940000158357	ENSGT00390000016025.b	ENSGT00940000158534.a.b	ENSGT00390000018044.a	ENSGT00940000156346.c.b	ENSGT00940000156800.j	ENSGT00940000160227.g	ENSGT00940000157599.c.a	ENSGT00390000012355.B.a	ENSGT00940000165857.b	ENSGT00390000012547.a.f.b ##22	ENSGT00940000161170.d	ENSGT00940000154870.D.a.a	ENSGT00940000165251	ENSGT00940000165481.b	ENSGT00940000164943.a.a	ENSGT00390000014273.a	ENSGT01050000244841.A.a.b.qb.b	ENSGT00940000164158.B	ENSGT01080000257410.A.f.m	ENSGT01030000234535.F.a	ENSGT00730000111392	ENSGT00940000155888	ENSGT00940000174630	ENSGT00950000183112.a	ENSGT00940000160583
Oryzias_b	ANCESTRAL SPECIES		ENSGT00940000163793.B	ENSGT00390000001338	ENSGT00940000163793.A.b	ENSGT00390000002443	ENSGT00940000172424	ENSGT00940000158357	ENSGT00390000016025.b	ENSGT00940000158534.a.b	ENSGT00390000018044.a	ENSGT00940000156346.c.b	ENSGT00940000156800.j	ENSGT00940000160227.g	ENSGT00940000157599.c.a	ENSGT00390000012355.B.a	ENSGT00940000165857.b	ENSGT00390000012547.a.f.b ##22	ENSGT00940000161170.d	ENSGT00940000154870.D.a.a	ENSGT00940000165251	ENSGT00940000165481.b	ENSGT00940000164943.a.a	ENSGT00390000014273.a	ENSGT01050000244841.A.a.b.qb.b	ENSGT00940000164158.B	ENSGT01080000257410.A.f.m	ENSGT01030000234535.F.a	ENSGT00730000111392	ENSGT00940000155888	ENSGT00940000174630	ENSGT00950000183112.a	ENSGT00940000160583
Indian medaka	MODERN SPECIES	15	ENSOMEG00000023279	ENSOMEG00000023295	ch25hl1.1 (ENSOMEG00000023303)	kti12 (ENSOMEG00000023350)	ENSOMEG00000023370	znf592 (ENSOMEG00000023379)	slc28a1 (ENSOMEG00000000632)	ENSOMEG00000023433	ENSOMEG00000023446	FRMD5 (ENSOMEG00000023513)	BLM (ENSOMEG00000023545)	ctsh (ENSOMEG00000023593)	RASGRF1 (ENSOMEG00000023646)	ENSOMEG00000023648	ENSOMEG00000023659	idh2 (ENSOMEG00000023667) ##22	znf710a (ENSOMEG00000023678)	sema4ba (ENSOMEG00000023701)	zgc:162879 (ENSOMEG00000005503)	ENSOMEG00000005518	ENSOMEG00000005554	ENSOMEG00000005576	pex11a (ENSOMEG00000005595)	gnrhr4 (ENSOMEG00000005623)	si:dkeyp-59c12.1 (ENSOMEG00000005648)	slco3a1a (ENSOMEG00000005704)	st8sia2 (ENSOMEG00000005755)	fam174b (ENSOMEG00000005774)	chd2 (ENSOMEG00000005831)	ENSOMEG00000005842	rgma (ENSOMEG00000005850)
Javanese ricefish	MODERN SPECIES	20	ch25hl1.2 (ENSOJAG00000013241)	si:dkey-24l11.2 (ENSOJAG00000013282)	ch25hl1.1 (ENSOJAG00000013292)	kti12 (ENSOJAG00000013310)	ENSOJAG00000013319	ENSOJAG00000013324	slc28a1 (ENSOJAG00000013373)	ENSOJAG00000014093	ENSOJAG00000014274	FRMD5 (ENSOJAG00000014374)	BLM (ENSOJAG00000014939)	ctsh (ENSOJAG00000015795)	RASGRF1 (ENSOJAG00000016192)	ENSOJAG00000016295	ENSOJAG00000016304	idh2 (ENSOJAG00000016393) ##22	znf710a (ENSOJAG00000017241)	sema4ba (ENSOJAG00000017256)	zgc:162879 (ENSOJAG00000017325)	ENSOJAG00000017394	ENSOJAG00000017427	pex11a (ENSOJAG00000017438)	gnrhr4 (ENSOJAG00000017443)	si:dkeyp-59c12.1 (ENSOJAG00000017451)	slco3a1a (ENSOJAG00000017456)	st8sia2 (ENSOJAG00000017474)	fam174b (ENSOJAG00000017497)	chd2 (ENSOJAG00000017547)	rgma (ENSOJAG00000018284)	ENSOJAG00000018293	lysmd4 (ENSOJAG00000018302)
Oryzias_a	ANCESTRAL SPECIES	1	ENSGT00940000154954.nb.a	ENSGT00940000163793.B	ENSGT00390000001338	ENSGT00940000163793.A.b	ENSGT00390000002443	ENSGT00940000172424	ENSGT00390000016025.b	ENSGT00940000158534.a.b	ENSGT00390000018044.a	ENSGT00940000156346.c.b	ENSGT00940000156800.j	ENSGT00940000160227.g	ENSGT00940000157599.c.a	ENSGT00390000012355.B.a	ENSGT00940000165857.b	ENSGT00390000012547.a.f.b ##22	ENSGT00940000161170.d	ENSGT00940000154870.D.a.a	ENSGT00940000165251	ENSGT00940000165481.b	ENSGT00940000164943.a.a	ENSGT00390000014273.a	ENSGT01050000244841.A.a.b.qb.b	ENSGT00940000164158.B	ENSGT01080000257410.A.f.m	ENSGT01030000234535.F.a	ENSGT00730000111392	ENSGT00940000155888	ENSGT00950000183112.a	ENSGT00940000160583	ENSGT00940000157540.A
Japanese Medaka HdrR	MODERN SPECIES	20	ENSORLG00000007981	ENSORLG00000023563	ch25hl1.1 (ENSORLG00000007987)	kti12 (ENSORLG00000007998)	znf592 (ENSORLG00000008019)	ENSORLG00000029492	slc28a1 (ENSORLG00000008050)	ENSORLG00000008059	ENSORLG00000029933	ENSORLG00000008097	blm (ENSORLG00000008110)	ctsh (ENSORLG00000023479)	ENSORLG00000008149	ENSORLG00000008173	ENSORLG00000008160	idh2 (ENSORLG00000008218) ##22	znf710a (ENSORLG00000008229)	sema4ba (ENSORLG00000008247)	zgc:162879 (ENSORLG00000008266)	ENSORLG00000008276	ENSORLG00000008312	pex11a (ENSORLG00000008325)	gnrhr4 (ENSORLG00000008335)	si:dkeyp-59c12.1 (ENSORLG00000008337)	slco3a1a (ENSORLG00000008355)	st8sia2 (ENSORLG00000008368)	fam174b (ENSORLG00000029263)	chd2 (ENSORLG00000008403)	rgma (ENSORLG00000008413)	lysmd4 (ENSORLG00000022726)	nr2f2 (ENSORLG00000008429)
Chinese medaka	MODERN SPECIES	766	si:dkey-24l11.2 (ENSOSIG00000008834)	ch25hl1.1 (ENSOSIG00000008832)	kti12 (ENSOSIG00000008830)	ENSOSIG00000008829	ENSOSIG00000008827	slc28a1 (ENSOSIG00000008813)	ENSOSIG00000008800	ENSOSIG00000008798	FRMD5 (ENSOSIG00000008787)	ENSOSIG00000008781	BLM (ENSOSIG00000008195)	ctsh (ENSOSIG00000008183)	RASGRF1 (ENSOSIG00000008179)	ENSOSIG00000008171	ENSOSIG00000008162	idh2 (ENSOSIG00000004117) ##22	znf710a (ENSOSIG00000003970)	sema4ba (ENSOSIG00000003088)	zgc:162879 (ENSOSIG00000003062)	ENSOSIG00000003056	ENSOSIG00000003053	ENSOSIG00000003046	pex11a (ENSOSIG00000003040)	gnrhr4 (ENSOSIG00000003019)	si:dkeyp-59c12.1 (ENSOSIG00000003011)	slco3a1a (ENSOSIG00000003005)	st8sia2 (ENSOSIG00000002999)	fam174b (ENSOSIG00000002991)	rgma (ENSOSIG00000000692)	lysmd4 (ENSOSIG00000020686)	nr2f2 (ENSOSIG00000020674)
Ovalentaria_B	ANCESTRAL SPECIES	3	ENSGT00940000163793.B	ENSGT00390000001338	ENSGT00940000163793.A.b	ENSGT00390000002443	ENSGT00940000172424	ENSGT00940000158357	ENSGT00390000016025.b	ENSGT00940000158534.a.b	ENSGT00390000018044.a	ENSGT00940000156346.c.b	ENSGT00940000156800.j	ENSGT00940000160227.g	ENSGT00940000157599.c.a	ENSGT00390000012355.B.a	ENSGT00940000165857.b	ENSGT00390000012547.a.f.b ##22	ENSGT00940000161170.d	ENSGT00940000154870.D.a.a	ENSGT00940000165251	ENSGT00940000165481.b	ENSGT00940000164943.a.a	ENSGT00390000014273.a	ENSGT01050000244841.A.a.b.qb.b	ENSGT00940000164158.B	ENSGT01080000257410.A.f.m	ENSGT01030000234535.F.a	ENSGT00730000111392	ENSGT00940000155888	ENSGT01100000264136	ENSGT00950000183112.a	ENSGT00940000160583
Cichlidae	ANCESTRAL SPECIES	5	ENSGT00940000163793.B	ENSGT00390000001338	ENSGT00940000163793.A.b	ENSGT00390000002443	ENSGT00940000172424	ENSGT00940000158357	ENSGT00390000016025.b	ENSGT00940000158534.a.b	ENSGT00390000018044.a	ENSGT00940000156346.c.b	ENSGT00940000156800.j	ENSGT00940000160227.g	ENSGT00940000157599.c.a	ENSGT00390000012355.B.a	ENSGT00940000165857.b	ENSGT00390000012547.a.f.b ##22	ENSGT00940000161170.d	ENSGT00940000154870.D.a.a	ENSGT00940000165251	ENSGT00940000165481.b	ENSGT00940000164943.a.a	ENSGT00390000014273.a	ENSGT01050000244841.A.a.b.qb.b	ENSGT00940000164158.B	ENSGT01080000257410.A.f.m	ENSGT01030000234535.F.a	ENSGT00730000111392	ENSGT00940000155888	ENSGT01100000264136	ENSGT00950000183112.a	ENSGT00940000160583
Pseudocrenilabrinae	ANCESTRAL SPECIES		ENSGT00390000001338	ENSGT00940000163793.A.b	ENSGT00390000002443	ENSGT00940000172424	ENSGT00940000158357	ENSGT00390000016025.b	ENSGT00940000158534.a.b	ENSGT00390000018044.a	ENSGT00940000179042	ENSGT00940000156346.c.b	ENSGT00940000156800.j	ENSGT00940000160227.g	ENSGT00940000157599.c.a	ENSGT00390000012355.B.a	ENSGT00940000165857.b	ENSGT00390000012547.a.f.b ##22	ENSGT00940000161170.d	ENSGT00940000154870.D.a.a	ENSGT00940000165251	ENSGT00940000165481.b	ENSGT00940000164943.a.a	ENSGT00390000014273.a	ENSGT01050000244841.A.a.b.qb.b	ENSGT00940000164158.B	ENSGT01080000257410.A.f.m	ENSGT01030000234535.F.a	ENSGT00730000111392	ENSGT00940000155888	ENSGT01100000264136	ENSGT00950000183112.a	ENSGT00940000160583
Pseudocrenilabrinae_A	ANCESTRAL SPECIES		ENSGT00390000001338	ENSGT00940000163793.A.b	ENSGT00390000002443	ENSGT00940000172424	ENSGT00940000158357	ENSGT00390000016025.b	ENSGT00940000158534.a.b	ENSGT00390000018044.a	ENSGT00940000179042	ENSGT00940000156346.c.b	ENSGT00940000156800.j	ENSGT00940000160227.g	ENSGT00940000157599.c.a	ENSGT00390000012355.B.a	ENSGT00940000165857.b	ENSGT00390000012547.a.f.b ##22	ENSGT00940000161170.d	ENSGT01060000248766.b	ENSGT00940000154870.D.a.a	ENSGT00940000165251	ENSGT00940000165481.b	ENSGT00940000164943.a.a	ENSGT00390000014273.a	ENSGT01050000244841.A.a.b.qb.b	ENSGT00940000164158.B	ENSGT01080000257410.A.f.m	ENSGT01030000234535.F.a	ENSGT00730000111392	ENSGT00940000155888	ENSGT01100000264136	ENSGT00950000183112.a
Haplochromini	ANCESTRAL SPECIES		ENSGT00940000163793.B	ENSGT00390000001338	ENSGT00940000163793.A.b	ENSGT00390000002443	ENSGT00940000172424	ENSGT00390000016025.b	ENSGT00940000158534.a.b	ENSGT00390000018044.a	ENSGT00940000179042	ENSGT00940000156346.c.b	ENSGT00940000156800.j	ENSGT00940000160227.g	ENSGT00940000157599.c.a	ENSGT00390000012355.B.a	ENSGT00940000165857.b	ENSGT00390000012547.a.f.b ##22	ENSGT00940000161170.d	ENSGT01060000248766.b.b	ENSGT00940000154870.D.a.a	ENSGT00940000165251	ENSGT00940000165481.b	ENSGT00940000164943.a.a	ENSGT00390000014273.a	ENSGT01050000244841.A.a.b.qb.b	ENSGT00940000164158.B	ENSGT01080000257410.A.f.m	ENSGT01030000234535.F.a	ENSGT00730000111392	ENSGT00940000155888	ENSGT01100000264136	ENSGT00950000183112.a
Burton s mouthbrooder	MODERN SPECIES	368	ch25hl1.1 (ENSHBUG00000015736)	kti12 (ENSHBUG00000015746)	ENSHBUG00000015783	ENSHBUG00000015792	slc28a1 (ENSHBUG00000015801)	ENSHBUG00000015826	ENSHBUG00000015874	ENSHBUG00000001032	FRMD5 (ENSHBUG00000015923)	FRMD5 (ENSHBUG00000015930)	BLM (ENSHBUG00000015943)	ctsh (ENSHBUG00000015950)	RASGRF1 (ENSHBUG00000016117)	ENSHBUG00000016129	ENSHBUG00000016180	idh2 (ENSHBUG00000016211) ##22	znf710a (ENSHBUG00000016225)	ENSHBUG00000016234	sema4ba (ENSHBUG00000016246)	zgc:162879 (ENSHBUG00000016335)	ENSHBUG00000016343	ENSHBUG00000016358	pex11a (ENSHBUG00000016368)	gnrhr4 (ENSHBUG00000016376)
Haplochromini_A	ANCESTRAL SPECIES	1	ENSGT00940000163793.B	ENSGT00390000001338	ENSGT00940000163793.A.b	ENSGT00390000002443	ENSGT00940000172424	ENSGT00390000016025.b	ENSGT00940000158534.a.b	ENSGT00390000018044.a	ENSGT00940000179042	ENSGT00940000156346.c.b	ENSGT00940000156800.j	ENSGT00940000160227.g	ENSGT00940000157599.c.a	ENSGT00390000012355.B.a	ENSGT00940000165857.b	ENSGT00390000012547.a.f.b ##22	ENSGT00940000161170.d	ENSGT01060000248766.b.b	ENSGT00940000154870.D.a.a	ENSGT00940000165251	ENSGT00940000165481.b	ENSGT00940000164943.a.a	ENSGT00390000014273.a	ENSGT01050000244841.A.a.b.qb.b	ENSGT00940000164158.B	ENSGT01080000257410.A.f.m	ENSGT01030000234535.F.a	ENSGT00730000111392	ENSGT00940000155888	ENSGT01100000264136	ENSGT00950000183112.a
Haplochromini_B	ANCESTRAL SPECIES	28	ENSGT00940000163793.B	ENSGT00390000001338	ENSGT00940000163793.A.b	ENSGT00390000002443	ENSGT00940000172424	ENSGT00390000016025.b	ENSGT00940000158534.a.b	ENSGT00390000018044.a	ENSGT00940000179042	ENSGT00940000156346.c.b	ENSGT00940000156800.j	ENSGT00940000160227.g	ENSGT00940000157599.c.a	ENSGT00390000012355.B.a	ENSGT00940000165857.b	ENSGT00390000012547.a.f.b ##22	ENSGT00940000161170.d	ENSGT01060000248766.b.b	ENSGT00940000154870.D.a.a	ENSGT00940000165251	ENSGT00940000165481.b	ENSGT00940000164943.a.a	ENSGT00390000014273.a	ENSGT01050000244841.A.a.b.qb.b	ENSGT00940000164158.B	ENSGT01080000257410.A.f.m	ENSGT01030000234535.F.a	ENSGT00730000111392	ENSGT00940000155888	ENSGT01100000264136	ENSGT00950000183112.a
Eastern happy	MODERN SPECIES	19	ENSACLG00000019935	ch25hl1.1 (ENSACLG00000019965)	kti12 (ENSACLG00000019973)	ENSACLG00000019997	ENSACLG00000020025	slc28a1 (ENSACLG00000020044)	ENSACLG00000020099	ENSACLG00000020182	ENSACLG00000020204	FRMD5 (ENSACLG00000020212)	BLM (ENSACLG00000020354)	ctsh (ENSACLG00000020426)	RASGRF1 (ENSACLG00000020568)	ENSACLG00000020834	ENSACLG00000020838	idh2 (ENSACLG00000020847) ##22	znf710a (ENSACLG00000020888)	sema4ba (ENSACLG00000020921)	ENSACLG00000021042	zgc:162879 (ENSACLG00000021066)	ENSACLG00000021159	ENSACLG00000021171	pex11a (ENSACLG00000021194)	gnrhr4 (ENSACLG00000021236)	si:dkeyp-59c12.1 (ENSACLG00000021245)	slco3a1a (ENSACLG00000021251)	st8sia2 (ENSACLG00000021303)	fam174b (ENSACLG00000021357)	chd2 (ENSACLG00000021370)	ENSACLG00000021440	rgma (ENSACLG00000021451)
Zebra mbuna	MODERN SPECIES	1110	ch25hl1.1 (ENSMZEG00005022353)	kti12 (ENSMZEG00005022351)	ENSMZEG00005022349	ENSMZEG00005022347	slc28a1 (ENSMZEG00005022343)	ENSMZEG00005022342	ENSMZEG00005022340	ENSMZEG00005022338	ENSMZEG00005022336	ENSMZEG00005022334	FRMD5 (ENSMZEG00005022332)	BLM (ENSMZEG00005022323)	RASGRF1 (ENSMZEG00005022309)	ENSMZEG00005022298	ENSMZEG00005022295	idh2 (ENSMZEG00005022294) ##22	znf710a (ENSMZEG00005022291)	sema4ba (ENSMZEG00005022271)	zgc:162879 (ENSMZEG00005022256)	ENSMZEG00005022252	ENSMZEG00005022247	pex11a (ENSMZEG00005022237)	gnrhr4 (ENSMZEG00005021398)	si:dkeyp-59c12.1 (ENSMZEG00005021361)	slco3a1a (ENSMZEG00005021357)	st8sia2 (ENSMZEG00005021348)	fam174b (ENSMZEG00005021342)	chd2 (ENSMZEG00005021333)	rgma (ENSMZEG00005021329)	lysmd4 (ENSMZEG00005021324)	ENSMZEG00005021320
P. nyererei	MODERN SPECIES	330	ENSPNYG00000011245	ENSPNYG00000011219	kti12 (ENSPNYG00000011194)	ENSPNYG00000011164	ENSPNYG00000011153	slc28a1 (ENSPNYG00000011137)	ENSPNYG00000011100	ENSPNYG00000011054	ENSPNYG00000011032	ENSPNYG00000010999	ENSPNYG00000010956	ctsh (ENSPNYG00000010936)	RASGRF1 (ENSPNYG00000010890)	ENSPNYG00000010853	ENSPNYG00000010783	idh2 (ENSPNYG00000010747) ##22	znf710a (ENSPNYG00000010732)	sema4ba (ENSPNYG00000010604)	zgc:162879 (ENSPNYG00000010530)	ENSPNYG00000010510	pex11a (ENSPNYG00000010500)	ENSPNYG00000010488	ENSPNYG00000010475	si:dkeyp-59c12.1 (ENSPNYG00000010458)	slco3a1a (ENSPNYG00000010413)	st8sia2 (ENSPNYG00000010345)	fam174b (ENSPNYG00000010335)	chd2 (ENSPNYG00000010273)	ENSPNYG00000010253	rgma (ENSPNYG00000010229)	lysmd4 (ENSPNYG00000010220)
Lyretail cichlid	MODERN SPECIES	305	ENSNBRG00000019329	ch25hl1.1 (ENSNBRG00000019349)	kti12 (ENSNBRG00000019360)	ENSNBRG00000019376	znf592 (ENSNBRG00000019421)	slc28a1 (ENSNBRG00000019491)	ENSNBRG00000019531	ENSNBRG00000019557	ENSNBRG00000019631	FRMD5 (ENSNBRG00000019654)	BLM (ENSNBRG00000019702)	ctsh (ENSNBRG00000019749)	RASGRF1 (ENSNBRG00000019779)	ENSNBRG00000019839	ENSNBRG00000019844	idh2 (ENSNBRG00000019851) ##22	znf710a (ENSNBRG00000019888)	ENSNBRG00000019915	sema4ba (ENSNBRG00000019961)	zgc:162879 (ENSNBRG00000020110)	ENSNBRG00000020142	ENSNBRG00000020153	ENSNBRG00000020167	pex11a (ENSNBRG00000020182)	gnrhr4 (ENSNBRG00000020258)	si:dkeyp-59c12.1 (ENSNBRG00000020526)	slco3a1a (ENSNBRG00000020539)	st8sia2 (ENSNBRG00000020566)	fam174b (ENSNBRG00000020584)	chd2 (ENSNBRG00000020591)	rgma (ENSNBRG00000020662)
Nile tilapia	MODERN SPECIES	19	si:dkey-24l11.2 (ENSONIG00000015228)	ch25hl1.1 (ENSONIG00000020966)	kti12 (ENSONIG00000015224)	ENSONIG00000042540	ENSONIG00000015221	slc28a1 (ENSONIG00000015214)	ENSONIG00000015209	ENSONIG00000015206	ENSONIG00000029590	FRMD5 (ENSONIG00000015202)	ENSONIG00000015193	ctsh (ENSONIG00000015188)	RASGRF1 (ENSONIG00000015181)	ENSONIG00000015179	ENSONIG00000020965	idh2 (ENSONIG00000015176) ##22	znf710a (ENSONIG00000038097)	sema4ba (ENSONIG00000015171)	zgc:162879 (ENSONIG00000015165)	ENSONIG00000015163	ENSONIG00000015159	pex11a (ENSONIG00000039417)	gnrhr4 (ENSONIG00000015155)	si:dkeyp-59c12.1 (ENSONIG00000033192)	slco3a1a (ENSONIG00000015148)	st8sia2 (ENSONIG00000015145)	fam174b (ENSONIG00000015144)	chd2 (ENSONIG00000015136)	rgma (ENSONIG00000033013)	lysmd4 (ENSONIG00000015134)	nr2f2 (ENSONIG00000015133)
Midas cichlid	MODERN SPECIES	385	tspan3a (ENSACIG00000000552)	ch25hl1.2 (ENSACIG00000000538)	ENSACIG00000000516	ENSACIG00000000490	ch25hl1.1 (ENSACIG00000000475)	kti12 (ENSACIG00000000434)	ENSACIG00000000418	ENSACIG00000000386	slc28a1 (ENSACIG00000000262)	ENSACIG00000000251	ENSACIG00000000195	BLM (ENSACIG00000023762)	RASGRF1 (ENSACIG00000023747)	ENSACIG00000023739	ENSACIG00000023734	idh2 (ENSACIG00000023731) ##22	znf710a (ENSACIG00000023728)	ENSACIG00000023722	zgc:162879 (ENSACIG00000023717)	ENSACIG00000023713	ENSACIG00000023706	pex11a (ENSACIG00000023702)	ENSACIG00000023595	si:dkeyp-59c12.1 (ENSACIG00000023588)	slco3a1a (ENSACIG00000023585)	st8sia2 (ENSACIG00000023584)	fam174b (ENSACIG00000023583)	chd2 (ENSACIG00000023575)	ENSACIG00000023571	rgma (ENSACIG00000023566)	lysmd4 (ENSACIG00000023559)
Pomacentridae	ANCESTRAL SPECIES	1	ENSGT00940000154954.nb.a	ENSGT00940000163793.B	ENSGT00390000001338	ENSGT00940000163793.A.b	ENSGT00390000002443	ENSGT00940000172424	ENSGT00390000016025.b	ENSGT00940000158534.a.b	ENSGT00390000018044.a	ENSGT00940000156346.c.b	ENSGT00940000156800.j	ENSGT00940000160227.g	ENSGT00940000157599.c.a	ENSGT00390000012355.B.a	ENSGT00940000165857.b	ENSGT00390000012547.a.f.b ##22	ENSGT00940000161170.d	ENSGT00940000154870.D.a.a	ENSGT00940000165251	ENSGT00940000165481.b	ENSGT00940000164943.a.a	ENSGT00390000014273.a	ENSGT01050000244841.A.a.b.qb.b	ENSGT00940000164158.B	ENSGT01080000257410.A.f.m	ENSGT01030000234535.F.a	ENSGT00730000111392	ENSGT00940000155888	ENSGT01100000264136	ENSGT00950000183112.a	ENSGT00940000160583
Pomacentridae_A	ANCESTRAL SPECIES	9	ENSGT00940000154954.nb.a	ENSGT00940000163793.B	ENSGT00390000001338	ENSGT00940000163793.A.b	ENSGT00390000002443	ENSGT00940000172424	ENSGT00390000016025.b	ENSGT00940000158534.a.b	ENSGT00390000018044.a	ENSGT00940000156346.c.b	ENSGT00940000156800.j	ENSGT00940000160227.g	ENSGT00940000157599.c.a	ENSGT00390000012355.B.a	ENSGT00940000165857.b	ENSGT00390000012547.a.f.b ##22	ENSGT00940000161170.d	ENSGT00940000154870.D.a.a	ENSGT00940000165251	ENSGT00940000165481.b	ENSGT00940000164943.a.a	ENSGT00390000014273.a	ENSGT01050000244841.A.a.b.qb.b	ENSGT00940000164158.B	ENSGT01080000257410.A.f.m	ENSGT01030000234535.F.a	ENSGT00730000111392	ENSGT00940000155888	ENSGT01100000264136	ENSGT00950000183112.a	ENSGT00940000160583
Amphiprion	ANCESTRAL SPECIES	4	ENSGT00940000156932.b	ENSGT00940000154954.nb.a	ENSGT00940000163793.B	ENSGT00390000001338	ENSGT00940000163793.A.b	ENSGT00390000002443	ENSGT00390000016025.b	ENSGT00940000158534.a.b	ENSGT00390000018044.a	ENSGT00940000156346.c.b	ENSGT00940000156800.j	ENSGT00940000160227.g	ENSGT00940000157599.c.a	ENSGT00390000012355.B.a	ENSGT00940000165857.b	ENSGT00390000012547.a.f.b ##22	ENSGT00940000161170.d	ENSGT00940000154870.D.a.a.a	ENSGT00940000165251	ENSGT00940000165481.b	ENSGT00940000164943.a.a	ENSGT00390000014273.a	ENSGT01050000244841.A.a.b.qb.b	ENSGT00940000164158.B	ENSGT01080000257410.A.f.m	ENSGT01030000234535.F.a	ENSGT00730000111392	ENSGT00940000155888	ENSGT01100000264136	ENSGT00950000183112.a	ENSGT00940000160583
Clown anemonefish	MODERN SPECIES	2129													RASGRF1 (ENSAOCG00000021157)	ENSAOCG00000021179	ENSAOCG00000001956	idh2 (ENSAOCG00000021269) ##22	znf710a (ENSAOCG00000021296)
Orange clownfish	MODERN SPECIES	18	ch25hl1.1 (ENSAPEG00000018359)	kti12 (ENSAPEG00000018351)	ENSAPEG00000018338	ENSAPEG00000018321	slc28a1 (ENSAPEG00000018291)	ENSAPEG00000018281	ENSAPEG00000018262	ENSAPEG00000018202	ENSAPEG00000018189	FRMD5 (ENSAPEG00000018154)	ENSAPEG00000018105	ctsh (ENSAPEG00000018069)	RASGRF1 (ENSAPEG00000017929)	ENSAPEG00000017919	ENSAPEG00000017892	idh2 (ENSAPEG00000017839) ##22	znf710a (ENSAPEG00000017816)	sema4ba (ENSAPEG00000017616)	zgc:162879 (ENSAPEG00000017489)	ENSAPEG00000017438	ENSAPEG00000017417	pex11a (ENSAPEG00000017406)	gnrhr4 (ENSAPEG00000016962)	si:dkeyp-59c12.1 (ENSAPEG00000016929)	slco3a1a (ENSAPEG00000016887)	st8sia2 (ENSAPEG00000016880)	fam174b (ENSAPEG00000016869)	chd2 (ENSAPEG00000016676)	ENSAPEG00000016637	rgma (ENSAPEG00000016612)	lysmd4 (ENSAPEG00000016599)
Spiny chromis	MODERN SPECIES	103														ENSAPOG00000008380	ENSAPOG00000008411	idh2 (ENSAPOG00000008457) ##22	znf710a (ENSAPOG00000008474)	sema4ba (ENSAPOG00000008498)	zgc:162879 (ENSAPOG00000008539)	ENSAPOG00000008576	ENSAPOG00000008587	pex11a (ENSAPOG00000008611)	gnrhr4 (ENSAPOG00000008618)	si:dkeyp-59c12.1 (ENSAPOG00000008629)	slco3a1a (ENSAPOG00000008676)	st8sia2 (ENSAPOG00000000227)	fam174b (ENSAPOG00000008724)	chd2 (ENSAPOG00000008913)	ENSAPOG00000008957	rgma (ENSAPOG00000008997)	lysmd4 (ENSAPOG00000009046)
Bicolor damselfish	MODERN SPECIES	1398													RASGRF1 (ENSSPAG00000010740)	ENSSPAG00000010727	ENSSPAG00000010720	idh2 (ENSSPAG00000010698) ##22	znf710a (ENSSPAG00000010688)	sema4ba (ENSSPAG00000010636)	zgc:162879 (ENSSPAG00000010598)
Percomorphaceae_C	ANCESTRAL SPECIES	5	ENSGT00390000001338	ENSGT00940000163793.A.b	ENSGT00390000002443	ENSGT00940000172424	ENSGT00940000158357	ENSGT00390000016025.b	ENSGT00940000158534.a.b	ENSGT00390000018044.a	ENSGT00980000202314	ENSGT00940000156346.c.b	ENSGT00940000156800	ENSGT00940000160227.g	ENSGT00940000157599.c.a	ENSGT00390000012355.B.a	ENSGT00940000165857.b	ENSGT00390000012547.a.f.b ##22	ENSGT00940000161170.d	ENSGT00940000154870.D.a.a	ENSGT00940000165251	ENSGT00940000165481.b	ENSGT00940000164943.a.a	ENSGT00390000014273.a	ENSGT01050000244841.A.a.b.qb.b	ENSGT00940000164158.B	ENSGT01080000257410.A.f.m	ENSGT01030000234535.F.a	ENSGT00730000111392	ENSGT00940000155888	ENSGT00940000174630	ENSGT00950000183112.a	ENSGT00940000160583
Percomorphaceae_D	ANCESTRAL SPECIES	5	ENSGT00390000001338	ENSGT00940000163793.A.b	ENSGT00390000002443	ENSGT00940000172424	ENSGT00940000158357	ENSGT00390000016025.b	ENSGT00940000158534.a.b	ENSGT00390000018044.a	ENSGT00980000202314	ENSGT00940000156346.c.b	ENSGT00940000156800	ENSGT00940000160227.g	ENSGT00940000157599.c.a	ENSGT00390000012355.B.a	ENSGT00940000165857.b	ENSGT00390000012547.a.f.b ##22	ENSGT00940000161170.d	ENSGT00940000154870.D.a.a	ENSGT00940000165251	ENSGT00940000165481.b	ENSGT00940000164943.a.a	ENSGT00390000014273.a	ENSGT01050000244841.A.a.b.qb.b	ENSGT00940000164158.B	ENSGT01080000257410.A.f.m	ENSGT01030000234535.F.a	ENSGT00730000111392	ENSGT00940000155888	ENSGT00940000174630	ENSGT00950000183112.a	ENSGT00940000160583
Anabantaria	ANCESTRAL SPECIES	5	ENSGT00940000154954.nb.a	ENSGT00940000163793.B	ENSGT00390000001338	ENSGT00390000002443	ENSGT00940000172424	ENSGT00940000158357	ENSGT00390000016025.b	ENSGT00940000158534.a.b	ENSGT00390000018044.a	ENSGT00980000202314	ENSGT00940000156346.c.b	ENSGT00940000156800	ENSGT00940000160227.g	ENSGT00940000157599.c.a	ENSGT00390000012355.B.a	ENSGT00390000012547.a.f.b ##22	ENSGT00940000161170.d	ENSGT00940000154870.D.a.a	ENSGT00940000165251	ENSGT00940000165481.b	ENSGT00940000164943.a.a	ENSGT00390000014273.a	ENSGT01050000244841.A.a.b.qb.b	ENSGT00940000164158.B	ENSGT01080000257410.A.f.m	ENSGT01030000234535.F.a	ENSGT00730000111392	ENSGT00940000155888	ENSGT00940000174630	ENSGT00950000183112.a	ENSGT00940000160583
Zig-zag eel	MODERN SPECIES	20	pstpip1a (ENSMAMG00000008434)	tspan3a (ENSMAMG00000008468)	ch25hl1.2 (ENSMAMG00000008490)	si:dkey-24l11.2 (ENSMAMG00000008500)	ENSMAMG00000024721	ENSMAMG00000008546	znf592 (ENSMAMG00000008540)	ENSMAMG00000008562	ENSMAMG00000008604	ENSMAMG00000008641	ENSMAMG00000008670	ENSMAMG00000008726	ctsh (ENSMAMG00000008738)	ENSMAMG00000008753	ENSMAMG00000008801	idh2 (ENSMAMG00000008807) ##22	znf710a (ENSMAMG00000008834)	sema4ba (ENSMAMG00000008846)	zgc:162879 (ENSMAMG00000008875)	ENSMAMG00000008908	ENSMAMG00000024897	ENSMAMG00000008917	pex11a (ENSMAMG00000008934)	ENSMAMG00000008945	ENSMAMG00000027074	ENSMAMG00000028168	si:dkeyp-59c12.1 (ENSMAMG00000008987)	slco3a1a (ENSMAMG00000009001)	st8sia2 (ENSMAMG00000009044)	fam174b (ENSMAMG00000024575)	chd2 (ENSMAMG00000009082)
Anabantoidei	ANCESTRAL SPECIES	5	ENSGT00940000154954.nb.a	ENSGT00940000163793.B	ENSGT00390000001338	ENSGT00390000002443	ENSGT00940000172424	ENSGT00940000158357	ENSGT00390000016025.b	ENSGT00940000158534.a.b	ENSGT00390000018044.a	ENSGT00980000202314	ENSGT00940000156346.c.b	ENSGT00940000156800	ENSGT00940000160227.g	ENSGT00940000157599.c.a	ENSGT00390000012355.B.a	ENSGT00390000012547.a.f.b ##22	ENSGT00940000161170.d	ENSGT00940000154870.D.a.a	ENSGT00940000165251	ENSGT00940000165481.b	ENSGT00940000164943.a.a	ENSGT00390000014273.a	ENSGT01050000244841.A.a.b.qb.b	ENSGT00940000164158.B	ENSGT01080000257410.A.f.m	ENSGT01030000234535.F.a	ENSGT00730000111392	ENSGT00940000155888	ENSGT00940000174630	ENSGT00950000183112.a	ENSGT00940000160583
Climbing perch	MODERN SPECIES	19	tspan3a (ENSATEG00000006730)	ch25hl1.2 (ENSATEG00000006722)	si:dkey-24l11.2 (ENSATEG00000006680)	ENSATEG00000029913	ENSATEG00000006617	ENSATEG00000006609	ENSATEG00000006546	ENSATEG00000006530	ENSATEG00000006523	ENSATEG00000026538	ENSATEG00000006444	ENSATEG00000006421	ctsh (ENSATEG00000006366)	ENSATEG00000006250	ENSATEG00000006230	idh2 (ENSATEG00000006165) ##22	znf710a (ENSATEG00000006126)	sema4ba (ENSATEG00000006115)	zgc:162879 (ENSATEG00000006102)	ENSATEG00000006095	ENSATEG00000006067	pex11a (ENSATEG00000006047)	ENSATEG00000005541	si:dkeyp-59c12.1 (ENSATEG00000005496)	slco3a1a (ENSATEG00000005441)	st8sia2 (ENSATEG00000005428)	fam174b (ENSATEG00000005411)	chd2 (ENSATEG00000005246)	ENSATEG00000005225	rgma (ENSATEG00000005223)	lysmd4 (ENSATEG00000005221)
Siamese fighting fish	MODERN SPECIES	17	pstpip1a (ENSBSLG00000023895)	tspan3a (ENSBSLG00000023847)	ch25hl1.2 (ENSBSLG00000023834)	si:dkey-24l11.2 (ENSBSLG00000023830)	kti12 (ENSBSLG00000023825)	ENSBSLG00000023821	znf592 (ENSBSLG00000023813)	slc28a1 (ENSBSLG00000023747)	ENSBSLG00000023721	ENSBSLG00000023715	FRMD5 (ENSBSLG00000023515)	BLM (ENSBSLG00000023202)	ctsh (ENSBSLG00000022657)	RASGRF1 (ENSBSLG00000022397)	ENSBSLG00000022307	idh2 (ENSBSLG00000021688) ##22	znf710a (ENSBSLG00000021665)	sema4ba (ENSBSLG00000021451)	zgc:162879 (ENSBSLG00000021349)	ENSBSLG00000021333	ENSBSLG00000021257	pex11a (ENSBSLG00000021219)	gnrhr4 (ENSBSLG00000021190)	si:dkeyp-59c12.1 (ENSBSLG00000021172)	slco3a1a (ENSBSLG00000021065)	st8sia2 (ENSBSLG00000020583)	fam174b (ENSBSLG00000020580)	chd2 (ENSBSLG00000019945)	ENSBSLG00000019790	rgma (ENSBSLG00000019763)	lysmd4 (ENSBSLG00000019500)
Carangaria	ANCESTRAL SPECIES	6	ENSGT00940000163793.B	ENSGT00390000001338	ENSGT00940000163793.A.b	ENSGT00390000002443	ENSGT00940000172424	ENSGT00940000158357	ENSGT00390000016025.b	ENSGT00940000158534.a.b	ENSGT00390000018044.a	ENSGT00940000156346.c.b	ENSGT00940000156800	ENSGT00940000160227.g	ENSGT00940000157599.c.a	ENSGT00390000012355.B.a	ENSGT00940000165857.b	ENSGT00390000012547.a.f.b ##22	ENSGT00940000161170.d	ENSGT00940000154870.D.a.a	ENSGT00940000165251	ENSGT00940000165481.b	ENSGT00940000164943.a.a	ENSGT00390000014273.a	ENSGT01050000244841.A.a.b.qb.b	ENSGT00940000164158.B	ENSGT01080000257410.A.f.m	ENSGT01030000234535.F.a	ENSGT00730000111392	ENSGT00940000155888	ENSGT00940000174630	ENSGT00950000183112.a	ENSGT00940000160583
Carangaria_A	ANCESTRAL SPECIES		ENSGT00940000163793.B	ENSGT00390000001338	ENSGT00940000163793.A.b	ENSGT00390000002443	ENSGT00940000172424	ENSGT00940000158357	ENSGT00390000016025.b	ENSGT00940000158534.a.b	ENSGT00390000018044.a	ENSGT00940000156346.c.b	ENSGT00940000156800	ENSGT00940000160227.g	ENSGT00940000157599.c.a	ENSGT00390000012355.B.a	ENSGT00940000165857.b	ENSGT00390000012547.a.f.b ##22	ENSGT00940000161170.d	ENSGT00940000154870.D.a.a	ENSGT00940000165251	ENSGT00940000165481.b	ENSGT00940000164943.a.a	ENSGT00390000014273.a	ENSGT01050000244841.A.a.b.qb.b	ENSGT00940000164158.B	ENSGT01080000257410.A.f.m	ENSGT01030000234535.F.a	ENSGT00730000111392	ENSGT00940000155888	ENSGT00940000174630	ENSGT00950000183112.a	ENSGT00940000160583
Seriola	ANCESTRAL SPECIES	5	ENSGT00940000163793.B	ENSGT00390000001338	ENSGT00940000163793.A.b	ENSGT00390000002443	ENSGT00940000172424	ENSGT00940000158357	ENSGT00390000016025.b	ENSGT00940000158534.a.b	ENSGT00390000018044.a	ENSGT00940000156346.c.b	ENSGT00940000156800	ENSGT00940000160227.g	ENSGT00940000157599.c.a	ENSGT00390000012355.B.a	ENSGT00940000165857.b	ENSGT00390000012547.a.f.b ##22	ENSGT00940000161170.d	ENSGT00940000154870.D.a.a	ENSGT00940000165251	ENSGT00940000165481.b	ENSGT00940000164943.a.a	ENSGT00390000014273.a	ENSGT01050000244841.A.a.b.qb.b	ENSGT00940000164158.B	ENSGT01080000257410.A.f.m	ENSGT01030000234535.F.a	ENSGT00730000111392	ENSGT00940000155888	ENSGT00940000174630	ENSGT00950000183112.a	ENSGT00940000160583
Greater amberjack	DUPLICATION
Greater amberjack	MODERN SPECIES	82	ch25hl1.2 (ENSSDUG00000010606)	si:dkey-24l11.2 (ENSSDUG00000010620)	ch25hl1.1 (ENSSDUG00000010642)	kti12 (ENSSDUG00000010659)	ENSSDUG00000010670	znf592 (ENSSDUG00000010682)	slc28a1 (ENSSDUG00000010710)	ENSSDUG00000010790	ENSSDUG00000010852	FRMD5 (ENSSDUG00000010904)	ENSSDUG00000010955	ctsh (ENSSDUG00000010987)	RASGRF1 (ENSSDUG00000011011)	ENSSDUG00000011069	ENSSDUG00000011077	idh2 (ENSSDUG00000011097) ##22	znf710a (ENSSDUG00000011142)	idh2 (ENSSDUG00000011184) ##22	sema4ba (ENSSDUG00000011456)	zgc:162879 (ENSSDUG00000011478)	ENSSDUG00000011503	ENSSDUG00000011521	pex11a (ENSSDUG00000011540)	gnrhr4 (ENSSDUG00000011599)	si:dkeyp-59c12.1 (ENSSDUG00000011812)	slco3a1a (ENSSDUG00000011820)	st8sia2 (ENSSDUG00000011877)	fam174b (ENSSDUG00000011946)	chd2 (ENSSDUG00000011962)	ENSSDUG00000012025	rgma (ENSSDUG00000012034)
Greater amberjack	MODERN SPECIES	82	ch25hl1.1 (ENSSDUG00000010642)	kti12 (ENSSDUG00000010659)	ENSSDUG00000010670	znf592 (ENSSDUG00000010682)	slc28a1 (ENSSDUG00000010710)	ENSSDUG00000010790	ENSSDUG00000010852	FRMD5 (ENSSDUG00000010904)	ENSSDUG00000010955	ctsh (ENSSDUG00000010987)	RASGRF1 (ENSSDUG00000011011)	ENSSDUG00000011069	ENSSDUG00000011077	idh2 (ENSSDUG00000011097) ##22	znf710a (ENSSDUG00000011142)	idh2 (ENSSDUG00000011184) ##22	sema4ba (ENSSDUG00000011456)	zgc:162879 (ENSSDUG00000011478)	ENSSDUG00000011503	ENSSDUG00000011521	pex11a (ENSSDUG00000011540)	gnrhr4 (ENSSDUG00000011599)	si:dkeyp-59c12.1 (ENSSDUG00000011812)	slco3a1a (ENSSDUG00000011820)	st8sia2 (ENSSDUG00000011877)	fam174b (ENSSDUG00000011946)	chd2 (ENSSDUG00000011962)	ENSSDUG00000012025	rgma (ENSSDUG00000012034)	lysmd4 (ENSSDUG00000012056)	nr2f2 (ENSSDUG00000012075)
Yellowtail amberjack	MODERN SPECIES	3044	ch25hl1.2 (ENSSLDG00000000176)	si:dkey-24l11.2 (ENSSLDG00000000205)	ch25hl1.1 (ENSSLDG00000000264)	kti12 (ENSSLDG00000000274)	ENSSLDG00000000330	znf592 (ENSSLDG00000000340)	slc28a1 (ENSSLDG00000000353)	ENSSLDG00000000513	ENSSLDG00000000546	FRMD5 (ENSSLDG00000000554)	ENSSLDG00000000634	ctsh (ENSSLDG00000000645)	RASGRF1 (ENSSLDG00000000687)	ENSSLDG00000000801	ENSSLDG00000000810	idh2 (ENSSLDG00000000816) ##22	znf710a (ENSSLDG00000000824)	sema4ba (ENSSLDG00000000854)	zgc:162879 (ENSSLDG00000000877)	ENSSLDG00000000952	ENSSLDG00000000993	pex11a (ENSSLDG00000001009)	gnrhr4 (ENSSLDG00000001021)	si:dkeyp-59c12.1 (ENSSLDG00000001033)	slco3a1a (ENSSLDG00000001038)	st8sia2 (ENSSLDG00000001087)	fam174b (ENSSLDG00000001123)	chd2 (ENSSLDG00000001146)	rgma (ENSSLDG00000001279)	ENSSLDG00000001308	lysmd4 (ENSSLDG00000001320)
Barramundi perch	MODERN SPECIES	97	ch25hl1.2 (ENSLCAG00010005013)	si:dkey-24l11.2 (ENSLCAG00010005014)	ch25hl1.1 (ENSLCAG00010005019)	kti12 (ENSLCAG00010005024)	ENSLCAG00010005029	znf592 (ENSLCAG00010005034)	slc28a1 (ENSLCAG00010005040)	ENSLCAG00010005050	ENSLCAG00010005059	FRMD5 (ENSLCAG00010005072)	ENSLCAG00010005093	ctsh (ENSLCAG00010005116)	RASGRF1 (ENSLCAG00010005287)	ENSLCAG00010005786	ENSLCAG00010005791	idh2 (ENSLCAG00010005797) ##22	znf710a (ENSLCAG00010005813)	sema4ba (ENSLCAG00010005820)	zgc:162879 (ENSLCAG00010005831)	ENSLCAG00010005841	ENSLCAG00010005848	pex11a (ENSLCAG00010005853)	gnrhr4 (ENSLCAG00010005856)	si:dkeyp-59c12.1 (ENSLCAG00010005862)	slco3a1a (ENSLCAG00010005867)	st8sia2 (ENSLCAG00010005877)	fam174b (ENSLCAG00010005886)	chd2 (ENSLCAG00010006020)	rgma (ENSLCAG00010006607)	ENSLCAG00010006609	lysmd4 (ENSLCAG00010006616)
Pleuronectoidei	ANCESTRAL SPECIES		ENSGT00940000154954.nb.a	ENSGT00940000163793.B	ENSGT00390000001338	ENSGT00940000163793.A.b	ENSGT00390000002443	ENSGT00940000172424	ENSGT00940000158357	ENSGT00390000016025.b	ENSGT00940000158534.a.b	ENSGT00390000018044.a	ENSGT00940000156346.c.b	ENSGT00940000156800	ENSGT00940000160227.g	ENSGT00940000157599.c.a	ENSGT00390000012355.B.a	ENSGT00390000012547.a.f.b ##22	ENSGT00940000161170.d	ENSGT00940000154870.D.a.a	ENSGT00940000165251	ENSGT00940000165481.b	ENSGT00940000164943.a.a	ENSGT00390000014273.a	ENSGT01050000244841.A.a.b.qb.b	ENSGT00940000164158.B	ENSGT01080000257410.A.f.m	ENSGT01030000234535.F.a	ENSGT00730000111392	ENSGT00940000155888	ENSGT00950000183112.a	ENSGT00940000160583	ENSGT00940000157540.A
Turbot	MODERN SPECIES	1	ch25hl1.2 (ENSSMAG00000000817)	si:dkey-24l11.2 (ENSSMAG00000000823)	ch25hl1.1 (ENSSMAG00000031938)	ENSSMAG00000000870	ENSSMAG00000000881	ENSSMAG00000000902	ENSSMAG00000000909	ENSSMAG00000000944	ENSSMAG00000025244	ENSSMAG00000000995	ENSSMAG00000001045	ENSSMAG00000001120	ctsh (ENSSMAG00000001156)	ENSSMAG00000001289	ENSSMAG00000001426	idh2 (ENSSMAG00000001429) ##22	znf710a (ENSSMAG00000001450)	sema4ba (ENSSMAG00000001477)	zgc:162879 (ENSSMAG00000001513)	ENSSMAG00000001588	ENSSMAG00000001611	pex11a (ENSSMAG00000001636)	ENSSMAG00000001642	si:dkeyp-59c12.1 (ENSSMAG00000001651)	slco3a1a (ENSSMAG00000001670)	st8sia2 (ENSSMAG00000001692)	fam174b (ENSSMAG00000034579)	chd2 (ENSSMAG00000001726)	rgma (ENSSMAG00000001869)	lysmd4 (ENSSMAG00000001890)	nr2f2 (ENSSMAG00000001895)
Tongue sole	MODERN SPECIES	16					ndufa9a (ENSCSEG00000013086)	si:dkey-24l11.2 (ENSCSEG00000013278)	kti12 (ENSCSEG00000013295)	znf592 (ENSCSEG00000013318)	slc28a1 (ENSCSEG00000013344)	ENSCSEG00000013370	ENSCSEG00000013397	FRMD5 (ENSCSEG00000013415)	BLM (ENSCSEG00000013483)	ctsh (ENSCSEG00000013517)	RASGRF1 (ENSCSEG00000013532)	idh2 (ENSCSEG00000013578) ##22	ENSCSEG00000013642	znf710a (ENSCSEG00000013650)	sema4ba (ENSCSEG00000013664)	zgc:162879 (ENSCSEG00000013699)	ENSCSEG00000013722	ENSCSEG00000013732	pex11a (ENSCSEG00000013733)	gnrhr4 (ENSCSEG00000013740)	ENSCSEG00000013787	snrkb (ENSCSEG00000013790)	ano10b (ENSCSEG00000013801)	fa2h (ENSCSEG00000013832)	ENSCSEG00000013848	CSNK2A2 (ENSCSEG00000013854)	ZNF319 (ENSCSEG00000013879)
Eupercaria	ANCESTRAL SPECIES	6	ENSGT00390000001338	ENSGT00940000163793.A.b	ENSGT00390000002443	ENSGT00940000172424	ENSGT00940000158357	ENSGT00390000016025.b	ENSGT00940000158534.a.b	ENSGT00390000018044.a	ENSGT00980000202314	ENSGT00940000156346.c.b	ENSGT00940000156800	ENSGT00940000160227.g	ENSGT00940000157599.c.a	ENSGT00390000012355.B.a	ENSGT00940000165857.b	ENSGT00390000012547.a.f.b ##22	ENSGT00940000161170.d	ENSGT00940000154870.D.a.a	ENSGT00940000165251	ENSGT00940000165481.b	ENSGT00940000164943.a.a	ENSGT00390000014273.a	ENSGT01050000244841.A.a.b.qb.b	ENSGT00940000164158.B	ENSGT01080000257410.A.f.m	ENSGT01030000234535.F.a	ENSGT00730000111392	ENSGT00940000155888	ENSGT00940000174630	ENSGT00950000183112.a	ENSGT00940000160583
Tetraodontidae	ANCESTRAL SPECIES	11				ENSGT00390000001338	ENSGT00390000002443	ENSGT00940000172424	ENSGT00940000158357	ENSGT00390000016025.b	ENSGT00940000158534.a.b	ENSGT00390000018044.a	ENSGT00940000156346.c.b	ENSGT00940000156800	ENSGT00940000160227.g	ENSGT00940000157599.c.a	ENSGT00390000012355.B.a	ENSGT00390000012547.a.f.b ##22	ENSGT00940000161170.d	ENSGT00940000154870.D.a.a	ENSGT00940000165251	ENSGT00940000165481.b	ENSGT00940000164943.a.a	ENSGT00390000014273.a	ENSGT01050000244841.A.a.b.qb.b	ENSGT00940000164158.B	ENSGT01080000257410.A.f.m	ENSGT01030000234535.F.a.f	ENSGT00730000111392	ENSGT00940000155888	ENSGT00950000183112.a	ENSGT00940000174630	ENSGT00940000160583
Fugu	MODERN SPECIES	21	ENSTRUG00000031793	ENSTRUG00000033485	ENSTRUG00000029814	si:dkey-24l11.2 (ENSTRUG00000021832)	kti12 (ENSTRUG00000025780)	ENSTRUG00000019724	znf592 (ENSTRUG00000003360)	slc28a1 (ENSTRUG00000003627)	ENSTRUG00000004542	ENSTRUG00000004620	FRMD5 (ENSTRUG00000004866)	ENSTRUG00000019860	ctsh (ENSTRUG00000005261)	RASGRF1 (ENSTRUG00000005281)	ENSTRUG00000025663	idh2 (ENSTRUG00000006159) ##22	znf710a (ENSTRUG00000006452)	sema4ba (ENSTRUG00000006523)	zgc:162879 (ENSTRUG00000006893)	ENSTRUG00000032361	ENSTRUG00000007308	pex11a (ENSTRUG00000007632)	ENSTRUG00000007711	si:dkeyp-59c12.1 (ENSTRUG00000007908)	slco3a1a (ENSTRUG00000008048)	st8sia2 (ENSTRUG00000025194)	fam174b (ENSTRUG00000026433)	chd2 (ENSTRUG00000008842)	rgma (ENSTRUG00000029874)	ENSTRUG00000009310	lysmd4 (ENSTRUG00000022031)
Tetraodon	MODERN SPECIES	4	mical3a (ENSTNIG00000000566)	ENSTNIG00000019255	hipk2 (ENSTNIG00000019254)	si:dkey-24l11.2 (ENSTNIG00000019253)	kti12 (ENSTNIG00000019252)	znf592 (ENSTNIG00000019251)	slc28a1 (ENSTNIG00000019250)	ENSTNIG00000019249	ENSTNIG00000019248	FRMD5 (ENSTNIG00000019247)	BLM (ENSTNIG00000019246)	ctsh (ENSTNIG00000019245)	RASGRF1 (ENSTNIG00000019244)	ENSTNIG00000019243	ENSTNIG00000019242	idh2 (ENSTNIG00000019241) ##22	sema4ba (ENSTNIG00000019240)	zgc:162879 (ENSTNIG00000019239)	ENSTNIG00000019238	ENSTNIG00000001294	ENSTNIG00000019237	pex11a (ENSTNIG00000019236)	ENSTNIG00000019235	si:dkeyp-59c12.1 (ENSTNIG00000019234)	ENSTNIG00000019233	nr2f2 (ENSTNIG00000000166)	nr2f2 (ENSTNIG00000001348)	ENSTNIG00000019232	mef2aa (ENSTNIG00000019231)	ENSTNIG00000019230	TTC23 (ENSTNIG00000019229)
Eupecaria_A	ANCESTRAL SPECIES	7	ENSGT00390000001338	ENSGT00940000163793.A.b	ENSGT00390000002443	ENSGT00940000172424	ENSGT00940000158357	ENSGT00390000016025.b	ENSGT00940000158534.a.b	ENSGT00390000018044.a	ENSGT00980000202314	ENSGT00940000156346.c.b	ENSGT00940000156800	ENSGT00940000160227.g	ENSGT00940000157599.c.a	ENSGT00390000012355.B.a	ENSGT00940000165857.b	ENSGT00390000012547.a.f.b ##22	ENSGT00940000161170.d	ENSGT00940000154870.D.a.a	ENSGT00940000165251	ENSGT00940000165481.b	ENSGT00940000164943.a.a	ENSGT00390000014273.a	ENSGT01050000244841.A.a.b.qb.b	ENSGT00940000164158.B	ENSGT01080000257410.A.f.m	ENSGT01030000234535.F.a	ENSGT00730000111392	ENSGT00940000155888	ENSGT00940000174630	ENSGT00950000183112.a	ENSGT00940000160583
Ballan wrasse	MODERN SPECIES	546															ENSLBEG00000006510	idh2 (ENSLBEG00000006568) ##22	znf710a (ENSLBEG00000006594)	sema4ba (ENSLBEG00000006639)	zgc:162879 (ENSLBEG00000006690)	ENSLBEG00000006815	ENSLBEG00000006870	pex11a (ENSLBEG00000006900)	gnrhr4 (ENSLBEG00000006912)
Eupecaria_B	ANCESTRAL SPECIES	7	ENSGT00390000001338	ENSGT00940000163793.A.b	ENSGT00390000002443	ENSGT00940000172424	ENSGT00940000158357	ENSGT00390000016025.b	ENSGT00940000158534.a.b	ENSGT00390000018044.a	ENSGT00980000202314	ENSGT00940000156346.c.b	ENSGT00940000156800	ENSGT00940000160227.g	ENSGT00940000157599.c.a	ENSGT00390000012355.B.a	ENSGT00940000165857.b	ENSGT00390000012547.a.f.b ##22	ENSGT00940000161170.d	ENSGT00940000154870.D.a.a	ENSGT00940000165251	ENSGT00940000165481.b	ENSGT00940000164943.a.a	ENSGT00390000014273.a	ENSGT01050000244841.A.a.b.qb.b	ENSGT00940000164158.B	ENSGT01080000257410.A.f.m	ENSGT01030000234535.F.a	ENSGT00730000111392	ENSGT00940000155888	ENSGT00940000174630	ENSGT00950000183112.a	ENSGT00940000160583
Eupecaria_C	ANCESTRAL SPECIES	6	ENSGT00940000163793.B	ENSGT00390000001338	ENSGT00940000163793.A.b	ENSGT00390000002443	ENSGT00940000172424	ENSGT00940000158357	ENSGT00390000016025.b	ENSGT00940000158534.a.b	ENSGT00390000018044.a	ENSGT00940000156346.c.b	ENSGT00940000156800	ENSGT00940000160227.g	ENSGT00940000157599.c.a	ENSGT00390000012355.B.a	ENSGT00940000165857.b	ENSGT00390000012547.a.f.b ##22	ENSGT00940000161170.d	ENSGT00940000154870.D.a.a	ENSGT00940000165251	ENSGT00940000165481.b	ENSGT00940000164943.a.a	ENSGT00390000014273.a	ENSGT01050000244841.A.a.b.qb.b	ENSGT00940000164158.B	ENSGT01080000257410.A.f.m	ENSGT01030000234535.F.a	ENSGT00730000111392	ENSGT00940000155888	ENSGT00940000174630	ENSGT00950000183112.a	ENSGT00940000160583
Eupercaria_incertae_sedis	ANCESTRAL SPECIES	4	ENSGT00940000163793.B	ENSGT00390000001338	ENSGT00940000163793.A.b	ENSGT00390000002443	ENSGT00940000172424	ENSGT00940000158357	ENSGT00390000016025.b	ENSGT00940000158534.a.b	ENSGT00390000018044.a	ENSGT00940000156346.c.b	ENSGT00940000156800	ENSGT00940000160227.g	ENSGT00940000157599.c.a	ENSGT00390000012355.B.a	ENSGT00940000165857.b	ENSGT00390000012547.a.f.b ##22	ENSGT00940000161170.d	ENSGT00940000154870.D.a.a	ENSGT00940000165251	ENSGT00940000165481.b	ENSGT00940000164943.a.a	ENSGT00390000014273.a	ENSGT01050000244841.A.a.b.qb.b	ENSGT00940000164158.B	ENSGT01080000257410.A.f.m	ENSGT01030000234535.F.a	ENSGT00730000111392	ENSGT00940000155888	ENSGT00940000174630	ENSGT00950000183112.a	ENSGT00940000160583
European seabass	MODERN SPECIES	19	pstpip1a (ENSDLAG00005013400)	tspan3a (ENSDLAG00005013374)	ch25hl1.2 (ENSDLAG00005013350)	si:dkey-24l11.2 (ENSDLAG00005013337)	ENSDLAG00005013315	ENSDLAG00005013304	znf592 (ENSDLAG00005013299)	ENSDLAG00005013267	ENSDLAG00005013246	ENSDLAG00005013193	ENSDLAG00005013079	ctsh (ENSDLAG00005034832)	ENSDLAG00005011593	ENSDLAG00005011551	ENSDLAG00005011539	idh2 (ENSDLAG00005010584) ##22	znf710a (ENSDLAG00005010547)	sema4ba (ENSDLAG00005010467)	zgc:162879 (ENSDLAG00005010385)	ENSDLAG00005010372	ENSDLAG00005010358	pex11a (ENSDLAG00005027327)	ENSDLAG00005010318	si:dkeyp-59c12.1 (ENSDLAG00005010307)	slco3a1a (ENSDLAG00005010267)	st8sia2 (ENSDLAG00005010256)	fam174b (ENSDLAG00005032009)	chd2 (ENSDLAG00005006606)	ENSDLAG00005006435	rgma (ENSDLAG00005034032)	lysmd4 (ENSDLAG00005006413)
Large yellow croaker	MODERN SPECIES	492	ch25hl1.2 (ENSLCRG00005020501)	si:dkey-24l11.2 (ENSLCRG00005020502)	ch25hl1.1 (ENSLCRG00005020503)	kti12 (ENSLCRG00005020504)	ENSLCRG00005020505	znf592 (ENSLCRG00005020506)	slc28a1 (ENSLCRG00005020508)	ENSLCRG00005020623	ENSLCRG00005020625	FRMD5 (ENSLCRG00005020628)	ENSLCRG00005020639	ctsh (ENSLCRG00005020855)	RASGRF1 (ENSLCRG00005020963)	ENSLCRG00005021213	ENSLCRG00005021214	idh2 (ENSLCRG00005021227) ##22	znf710a (ENSLCRG00005021681)	sema4ba (ENSLCRG00005021688)	zgc:162879 (ENSLCRG00005021703)	ENSLCRG00005021706	ENSLCRG00005021708	pex11a (ENSLCRG00005021710)	gnrhr4 (ENSLCRG00005021712)	si:dkeyp-59c12.1 (ENSLCRG00005021713)	slco3a1a (ENSLCRG00005021719)	st8sia2 (ENSLCRG00005021721)	fam174b (ENSLCRG00005021722)	chd2 (ENSLCRG00005021750)	rgma (ENSLCRG00005022828)	ENSLCRG00005022829	lysmd4 (ENSLCRG00005022831)
Gilthead seabream	MODERN SPECIES	22	ch25hl1.2 (ENSSAUG00010021351)	si:dkey-24l11.2 (ENSSAUG00010021349)	ch25hl1.1 (ENSSAUG00010021347)	kti12 (ENSSAUG00010021346)	ENSSAUG00010021345	znf592 (ENSSAUG00010021344)	slc28a1 (ENSSAUG00010021340)	ENSSAUG00010021337	ENSSAUG00010021335	FRMD5 (ENSSAUG00010021333)	ENSSAUG00010021147	ctsh (ENSSAUG00010021061)	RASGRF1 (ENSSAUG00010021009)	ENSSAUG00010021007	ENSSAUG00010021006	idh2 (ENSSAUG00010019613) ##22	znf710a (ENSSAUG00010019608)	sema4ba (ENSSAUG00010019479)	zgc:162879 (ENSSAUG00010019464)	ENSSAUG00010019461	ENSSAUG00010019455	pex11a (ENSSAUG00010019457)	gnrhr4 (ENSSAUG00010019454)	si:dkeyp-59c12.1 (ENSSAUG00010019452)	slco3a1a (ENSSAUG00010019447)	st8sia2 (ENSSAUG00010019441)	fam174b (ENSSAUG00010019437)	chd2 (ENSSAUG00010017697)	ENSSAUG00010017686	rgma (ENSSAUG00010017683)	lysmd4 (ENSSAUG00010017679)
Perciformes	ANCESTRAL SPECIES	7	ENSGT00390000001338	ENSGT00940000163793.A.b	ENSGT00390000002443	ENSGT00940000172424	ENSGT00940000158357	ENSGT00390000016025.b	ENSGT00940000158534.a.b	ENSGT00390000018044.a	ENSGT00980000202314	ENSGT00940000156346.c.b	ENSGT00940000156800	ENSGT00940000160227.g	ENSGT00940000157599.c.a	ENSGT00390000012355.B.a	ENSGT00940000165857.b	ENSGT00390000012547.a.f.b ##22	ENSGT00940000161170.d	ENSGT00940000154870.D.a.a	ENSGT00940000165251	ENSGT00940000165481.b	ENSGT00940000164943.a.a	ENSGT00390000014273.a	ENSGT01050000244841.A.a.b.qb.b	ENSGT00940000164158.B	ENSGT01080000257410.A.f.m	ENSGT01030000234535.F.a	ENSGT00730000111392	ENSGT00940000155888	ENSGT00940000174630	ENSGT00950000183112.a	ENSGT00940000160583
Cottioidei	ANCESTRAL SPECIES	6	ENSGT00940000154954.nb.a	ENSGT00940000163793.B	ENSGT00390000001338	ENSGT00940000163793.A.b	ENSGT00390000002443	ENSGT00940000172424	ENSGT00940000158357	ENSGT00390000016025.b	ENSGT00940000158534.a.b	ENSGT00390000018044.a	ENSGT00940000156346.c.b	ENSGT00940000156800	ENSGT00940000157599.c.a	ENSGT00390000012355.B.a	ENSGT00940000165857.b	ENSGT00390000012547.a.f.b ##22	ENSGT00940000161170.d	ENSGT00940000154870.D.a.a	ENSGT00940000165251	ENSGT00940000165481.b	ENSGT00940000164943.a.a	ENSGT00390000014273.a	ENSGT01050000244841.A.a.b.qb.b	ENSGT00940000164158.B	ENSGT01080000257410.A.f.m	ENSGT01030000234535.F.a	ENSGT00730000111392	ENSGT00940000155888	ENSGT00940000174630	ENSGT00950000183112.a	ENSGT00940000160583
Lumpfish	MODERN SPECIES	21	tspan3a (ENSCLMG00005007302)	ch25hl1.2 (ENSCLMG00005007304)	si:dkey-24l11.2 (ENSCLMG00005007312)	ch25hl1.1 (ENSCLMG00005007316)	kti12 (ENSCLMG00005007318)	ENSCLMG00005007321	znf592 (ENSCLMG00005007323)	slc28a1 (ENSCLMG00005007325)	ENSCLMG00005007329	ENSCLMG00005007334	ENSCLMG00005007337	BLM (ENSCLMG00005007349)	RASGRF1 (ENSCLMG00005008519)	ENSCLMG00005008528	ENSCLMG00005008529	idh2 (ENSCLMG00005008548) ##22	znf710a (ENSCLMG00005010792)	sema4ba (ENSCLMG00005010793)	zgc:162879 (ENSCLMG00005010795)	ENSCLMG00005010797	ENSCLMG00005010799	pex11a (ENSCLMG00005010800)	ENSCLMG00005010801	si:dkeyp-59c12.1 (ENSCLMG00005010802)	slco3a1a (ENSCLMG00005010803)	st8sia2 (ENSCLMG00005010804)	fam174b (ENSCLMG00005010805)	chd2 (ENSCLMG00005010810)	ENSCLMG00005011185	rgma (ENSCLMG00005011186)	lysmd4 (ENSCLMG00005011187)
Stickleback	MODERN SPECIES	14	ccdc77 (ENSGACG00000010988)	hdhd5 (ENSGACG00000010978)	RAB19 (ENSGACG00000010965)	ccdc34 (ENSGACG00000010963)	SLC15A5 (ENSGACG00000010960)	tmem17 (ENSGACG00000010954)	agbl2 (ENSGACG00000010944)	znf592 (ENSGACG00000010936)	slc28a1 (ENSGACG00000010911)	ENSGACG00000010898	ENSGACG00000010891	FRMD5 (ENSGACG00000010873)	BLM (ENSGACG00000010863)	RASGRF1 (ENSGACG00000010861)	ENSGACG00000010857	idh2 (ENSGACG00000010827) ##22	znf710a (ENSGACG00000010823)	sema4ba (ENSGACG00000010807)	zgc:162879 (ENSGACG00000010798)	ENSGACG00000010785	ENSGACG00000010775	pex11a (ENSGACG00000010771)	gnrhr4 (ENSGACG00000010762)	si:dkeyp-59c12.1 (ENSGACG00000010758)	slco3a1a (ENSGACG00000010749)	st8sia2 (ENSGACG00000010746)	fam174b (ENSGACG00000010742)	klf13 (ENSGACG00000010739)	OTUD7A (ENSGACG00000010734)	ENSGACG00000010732	GCNT3 (ENSGACG00000010729)
Perciformes_a	ANCESTRAL SPECIES	7	ENSGT00390000001338	ENSGT00940000163793.A.b	ENSGT00390000002443	ENSGT00940000172424	ENSGT00940000154437	ENSGT00390000016025.b	ENSGT00940000158534.a.b	ENSGT00390000018044.a	ENSGT00980000202314	ENSGT00940000156346.c.b	ENSGT00940000156800	ENSGT00940000160227.g	ENSGT00940000157599.c.a	ENSGT00390000012355.B.a	ENSGT00940000165857.b	ENSGT00390000012547.a.f.b ##22	ENSGT00940000161170.d	ENSGT00940000154870.D.a.a	ENSGT00940000165251	ENSGT00940000165481.b	ENSGT00940000164943.a.a	ENSGT00390000014273.a	ENSGT01050000244841.A.a.b.qb.b	ENSGT00940000164158.B	ENSGT01080000257410.A.f.m	ENSGT01030000234535.F.a	ENSGT00730000111392	ENSGT00940000155888	ENSGT00940000174630	ENSGT00950000183112.a	ENSGT00940000160583
Channel bull blenny	MODERN SPECIES	20	ch25hl1.1 (ENSCGOG00000015619)	kti12 (ENSCGOG00000015585)	ENSCGOG00000015583	ENSCGOG00000015581	slc28a1 (ENSCGOG00000015460)	ENSCGOG00000015451	ENSCGOG00000015446	ENSCGOG00000015441	ENSCGOG00000015439	FRMD5 (ENSCGOG00000015184)	BLM (ENSCGOG00000015009)	ctsh (ENSCGOG00000014591)	RASGRF1 (ENSCGOG00000013624)	ENSCGOG00000013607	ENSCGOG00000013605	idh2 (ENSCGOG00000011490) ##22	znf710a (ENSCGOG00000011450)	sema4ba (ENSCGOG00000011422)	zgc:162879 (ENSCGOG00000011419)	ENSCGOG00000011418	ENSCGOG00000011410	pex11a (ENSCGOG00000011405)	gnrhr4 (ENSCGOG00000011403)	si:dkeyp-59c12.1 (ENSCGOG00000011400)	slco3a1a (ENSCGOG00000011372)	st8sia2 (ENSCGOG00000011367)	fam174b (ENSCGOG00000011366)	chd2 (ENSCGOG00000009639)	rgma (ENSCGOG00000009589)	lysmd4 (ENSCGOG00000009587)	nr2f2 (ENSCGOG00000009537)
Pike perch	MODERN SPECIES	6	rcn2 (ENSSLUG00000009796)	tspan3a (ENSSLUG00000009786)	ch25hl1.2 (ENSSLUG00000009776)	si:dkey-24l11.2 (ENSSLUG00000009768)	kti12 (ENSSLUG00000009758)	ENSSLUG00000009752	ENSSLUG00000009750	slc28a1 (ENSSLUG00000009360)	ENSSLUG00000009342	ENSSLUG00000009336	FRMD5 (ENSSLUG00000009330)	BLM (ENSSLUG00000009054)	ctsh (ENSSLUG00000008729)	RASGRF1 (ENSSLUG00000008647)	ENSSLUG00000008614	idh2 (ENSSLUG00000007447) ##22	znf710a (ENSSLUG00000007368)	sema4ba (ENSSLUG00000007335)	zgc:162879 (ENSSLUG00000007303)	ENSSLUG00000007293	pex11a (ENSSLUG00000007286)	ENSSLUG00000007268	si:dkeyp-59c12.1 (ENSSLUG00000007262)	slco3a1a (ENSSLUG00000007254)	st8sia2 (ENSSLUG00000007242)	fam174b (ENSSLUG00000007234)	chd2 (ENSSLUG00000004931)	ENSSLUG00000004808	rgma (ENSSLUG00000004803)	lysmd4 (ENSSLUG00000004800)	nr2f2 (ENSSLUG00000004732)
Otomorpha	ANCESTRAL SPECIES		ENSGT00390000001338	ENSGT00940000163793.A.b	ENSGT00390000002443	ENSGT00940000154470.b	ENSGT00390000015600.c.a	ENSGT00940000158357	ENSGT00390000016025.b	ENSGT00940000158534.a.b	ENSGT00390000018044.a	ENSGT00940000156346.c.b	ENSGT00940000156800	ENSGT00940000160227	ENSGT00940000157599.c.a	ENSGT00390000012355.B.a	ENSGT00940000165857.b	ENSGT00390000012547.a ##22	ENSGT00940000161170.d	ENSGT00940000154870.D.a.a	ENSGT00940000165251	ENSGT00940000164082.a.a	ENSGT00940000164082.a.b	ENSGT00940000165481.b	ENSGT00940000164943.a.a	ENSGT00390000014273.a	ENSGT01050000244841.A.a.b.qb.b	ENSGT00950000182920.a	ENSGT00940000164158.B	ENSGT01080000257410.A.f.m	ENSGT01030000234535.F.a	ENSGT00730000111392	ENSGT00980000203452
Otophysi	ANCESTRAL SPECIES	4	ENSGT00940000163793.B	ENSGT00390000001338	ENSGT00940000163793.A.b	ENSGT00390000002443	ENSGT00940000154470.b	ENSGT00390000015600.c.a	ENSGT00940000158357	ENSGT00390000016025.b	ENSGT00940000158534.a.b	ENSGT00390000018044.a	ENSGT00940000156346.c.b	ENSGT00940000156800	ENSGT00940000160227	ENSGT00940000157599.c.a	ENSGT00390000012355.B.a	ENSGT00390000012547.a ##22	ENSGT00940000161170.d	ENSGT00940000154870.D.a.a	ENSGT00940000165251	ENSGT00940000164082.a.b	ENSGT00940000165481.b	ENSGT00940000164943.a.a	ENSGT00390000014273.a	ENSGT01050000244841.A.a.b.qb.b	ENSGT00950000182920.a	ENSGT00940000164158.B	ENSGT01080000257410.A.f.m	ENSGT01030000234535.F.a	ENSGT00730000111392	ENSGT00980000203452	ENSGT00940000155888
Characiphysae	ANCESTRAL SPECIES	8	ENSGT00940000163793.B	ENSGT00390000001338	ENSGT00940000163793.A.b	ENSGT00390000002443	ENSGT00940000172895	ENSGT00390000015600.c.a	ENSGT00940000158357	ENSGT00390000016025.b	ENSGT00940000158534.a.b	ENSGT00390000018044.a	ENSGT00940000156346.c.b	ENSGT00940000156800	ENSGT00940000160227	ENSGT00940000157599.c.a	ENSGT00390000012355.B.a	ENSGT00390000012547.a ##22	ENSGT00940000161170.d	ENSGT00940000154870.D.a.a.g	ENSGT00940000165251	ENSGT00940000164082.a.a	ENSGT00940000165481.b	ENSGT00940000164943.a.a	ENSGT00390000014273.a	ENSGT01050000244841.A.a.b.qb.b	ENSGT00940000164158.B	ENSGT01080000257410.A.f.m	ENSGT01030000234535.F.a	ENSGT00730000111392	ENSGT00940000155888	ENSGT00950000183112.a	ENSGT00940000160583
Channel catfish	MODERN SPECIES	23	ENSIPUG00000000503	chd2 (ENSIPUG00000000488)	ENSIPUG00000000485	ENSIPUG00000000483	ENSIPUG00000000481	ENSIPUG00000000479	slc28a1 (ENSIPUG00000000476)	sec11a (ENSIPUG00000000473)	ENSIPUG00000000467	ENSIPUG00000000465	ENSIPUG00000000462	ENSIPUG00000000457	ENSIPUG00000000452	rasgrf1 (ENSIPUG00000000430)	ARAF (ENSIPUG00000000416)	idh2 (ENSIPUG00000000405) ##22	znf710 (ENSIPUG00000000399)	ENSIPUG00000000397	KCNJ1 (ENSIPUG00000000395)	Napa (ENSIPUG00000000381)	Ehd2 (ENSIPUG00000000204)	ENSIPUG00000000198	lmo2 (ENSIPUG00000000195)	ENSIPUG00000000179	ENSIPUG00000023478	ENSIPUG00000023465	prdm10 (ENSIPUG00000023413)	ENSIPUG00000023406	aplp2 (ENSIPUG00000023373)	st14a (ENSIPUG00000023361)	ENSIPUG00000023359
Characiphysae_b	ANCESTRAL SPECIES	4	ENSGT00940000163793.B	ENSGT00390000001338	ENSGT00940000163793.A.b	ENSGT00390000002443	ENSGT00940000172895	ENSGT00390000015600.c.a	ENSGT00940000158357	ENSGT00390000016025.b	ENSGT00940000158534.a.b	ENSGT00390000018044.a	ENSGT00940000156346.c.b	ENSGT00940000156800	ENSGT00940000160227	ENSGT00940000157599.c.a	ENSGT00390000012355.B.a	ENSGT00390000012547.a ##22	ENSGT00940000161170.d	ENSGT00940000154870.D.a.a.g	ENSGT00940000165251	ENSGT00940000164082.a.a	ENSGT00940000165481.b	ENSGT00940000164943.a.a.c	ENSGT00390000014273.a	ENSGT01050000244841.A.a.b.qb.b	ENSGT00950000182920.a	ENSGT00970000195554	ENSGT00940000164158.B	ENSGT01080000257410.A.f.m	ENSGT01030000234535.F.a	ENSGT00730000111392	ENSGT00940000155888
Characoidei	ANCESTRAL SPECIES	145	ENSGT00940000163793.B	ENSGT00390000001338	ENSGT00940000163793.A.b	ENSGT00390000002443	ENSGT00940000172895	ENSGT00390000015600.c.a	ENSGT00940000158357	ENSGT00390000016025.b	ENSGT00940000158534.a.b	ENSGT00390000018044.a	ENSGT00940000156346.c.b	ENSGT00940000156800	ENSGT00940000160227	ENSGT00940000157599.c.a	ENSGT00390000012355.B.a	ENSGT00390000012547.a ##22	ENSGT00940000161170.d	ENSGT00940000154870.D.a.a.g	ENSGT00940000165251	ENSGT00940000164082.a.a	ENSGT00940000165481.b	ENSGT00940000164943.a.a.d
Red-bellied piranha	MODERN SPECIES	179	ch25hl1.2 (ENSPNAG00000001658)	si:dkey-24l11.2 (ENSPNAG00000001676)	ch25hl1.1 (ENSPNAG00000011369)	kti12 (ENSPNAG00000011401)	ENSPNAG00000011411	sec11a (ENSPNAG00000011440)	znf592 (ENSPNAG00000011446)	slc28a1 (ENSPNAG00000011474)	ENSPNAG00000011556	ENSPNAG00000001822	FRMD5 (ENSPNAG00000001876)	ENSPNAG00000011714	ctsh (ENSPNAG00000011751)	RASGRF1 (ENSPNAG00000011821)	ENSPNAG00000005713	idh2 (ENSPNAG00000001970) ##22	znf710a (ENSPNAG00000011866)	ENSPNAG00000011879	sema4ba (ENSPNAG00000011898)	zgc:162879 (ENSPNAG00000012022)	SERF2 (ENSPNAG00000012112)	ENSPNAG00000012138	ENSPNAG00000012154	ENSPNAG00000002115
Mexicana tetra	MODERN SPECIES	9	kti12 (ENSAMXG00000040665)	ch25hl1.1 (ENSAMXG00000038751)	ENSAMXG00000037756	sec11a (ENSAMXG00000032933)	sec11a (ENSAMXG00000016804)	znf592 (ENSAMXG00000016838)	slc28a1 (ENSAMXG00000016875)	ENSAMXG00000016922	ENSAMXG00000016943	FRMD5 (ENSAMXG00000016956)	ENSAMXG00000041909	ENSAMXG00000016970	ctsh (ENSAMXG00000039984)	RASGRF1 (ENSAMXG00000017015)	ENSAMXG00000025198	idh2 (ENSAMXG00000007438) ##22	znf710a (ENSAMXG00000007435)	sema4ba (ENSAMXG00000037313)	zgc:162879 (ENSAMXG00000007430)	SERF2 (ENSAMXG00000007428)	ENSAMXG00000007423	ENSAMXG00000029267	ENSAMXG00000037758	ENSAMXG00000007963	ENSAMXG00000040836	ENSAMXG00000025906	ENSAMXG00000037258	veph1 (ENSAMXG00000010844)	PTX3 (ENSAMXG00000041282)	ENSAMXG00000038923	ENSAMXG00000010827
Electric eel	MODERN SPECIES	80								ENSEEEG00000016417	limk1a (ENSEEEG00000016424)	ENSEEEG00000016645	FRMD5 (ENSEEEG00000016651)	BLM (ENSEEEG00000016662)	ctsh (ENSEEEG00000016665)	RASGRF1 (ENSEEEG00000016690)	ENSEEEG00000016699	idh2 (ENSEEEG00000016730) ##22	znf710a (ENSEEEG00000017191)	ENSEEEG00000017192	sema4ba (ENSEEEG00000017194)	zgc:162879 (ENSEEEG00000017196)	SERF2 (ENSEEEG00000017200)	ENSEEEG00000017202	ENSEEEG00000017204	pex11a (ENSEEEG00000017209)	gnrhr4 (ENSEEEG00000017220)	ENSEEEG00000017319	si:dkeyp-59c12.1 (ENSEEEG00000017320)	slco3a1a (ENSEEEG00000017324)	st8sia2 (ENSEEEG00000017325)	fam174b (ENSEEEG00000017326)	chd2 (ENSEEEG00000017335)
Cyprinoidei	ANCESTRAL SPECIES	10	ENSGT00390000001338	ENSGT00940000163793.A.b	ENSGT00390000002443	ENSGT00940000154470.b.d	ENSGT00390000015600.c.a	ENSGT00940000158357	ENSGT00390000016025.b	ENSGT00940000158534.a.b.e	ENSGT00940000158534.a.b.f	ENSGT00390000018044.a	ENSGT00940000156346.c.b	ENSGT00940000156800	ENSGT00940000160227	ENSGT00940000157599.c.a	ENSGT00390000012355.B.a	ENSGT00390000012547.a ##22	ENSGT00940000161170.d	ENSGT00940000154870.D.a.a	ENSGT00940000165251	ENSGT00940000164082.a.b.a	ENSGT00940000165481.b	ENSGT00940000164943.a.a	ENSGT00390000014273.a	ENSGT01050000244841.A.a.b.qb.b	ENSGT00950000182920.a	ENSGT00940000164158.B	ENSGT01080000257410.A.f.m	ENSGT01030000234535.F.a	ENSGT00730000111392	ENSGT00980000203452	ENSGT00940000155888
Cyprininae	DUPLICATION
Cyprininae	ANCESTRAL SPECIES	47	ENSGT00940000163793.B.a	ENSGT00390000001338.d	ENSGT00940000163793.A.b	ENSGT00390000002443.b	ENSGT00940000154470.b.d.c.a	ENSGT00390000015600.c.a.nb	ENSGT00940000158357.b	ENSGT00390000016025.b.a	ENSGT00940000158534.a.b.f	ENSGT00390000018044.a.c	ENSGT00940000156346.c.b.a	ENSGT00940000156800.l	ENSGT00940000160227.e	ENSGT00940000157599.c.a.b	ENSGT00390000012355.B.a.b	ENSGT00390000012547.a.g ##22	ENSGT00940000161170.d.a	ENSGT00940000154870.D.a.a.j	ENSGT00940000165251.e	ENSGT00940000164082.a.b.a	ENSGT00940000164943.a.a.f	ENSGT00390000014273.a.l	ENSGT01050000244841.A.a.b.qb.b.c	ENSGT00950000182920.a	ENSGT00940000164158.B.a	ENSGT01080000257410.A.f.m.a	ENSGT01030000234535.F.a.b	ENSGT00730000111392.c	ENSGT00940000155888.gb	ENSGT00950000183112.a.h	ENSGT00940000160583.f
Cyprininae_a	ANCESTRAL SPECIES	133	ENSGT00940000163793.B.a	ENSGT00390000001338.d	ENSGT00940000163793.A.b.e	ENSGT00390000002443.b	ENSGT00940000154470.b.d.c.a	ENSGT00390000015600.c.a.nb	ENSGT00940000158357.b	ENSGT00390000016025.b.a	ENSGT00940000158534.a.b.f	ENSGT00390000018044.a.c	ENSGT00940000156346.c.b.a	ENSGT00940000156800.l	ENSGT00940000160227.e	ENSGT00940000157599.c.a.b	ENSGT00390000012355.B.a.b	ENSGT00390000012547.a.g ##22	ENSGT00940000161170.d.a	ENSGT00940000154870.D.a.a.j	ENSGT00940000165251.e	ENSGT00940000164082.a.b.a	ENSGT00940000164943.a.a.f	ENSGT00390000014273.a.l	ENSGT01050000244841.A.a.b.qb.b.c	ENSGT00950000182920.a	ENSGT00940000164158.B.a	ENSGT01080000257410.A.f.m.a	ENSGT01030000234535.F.a.b	ENSGT00730000111392.c	ENSGT00940000155888.gb	ENSGT00950000183112.a.h	ENSGT00940000160583.f
Common carp reference	MODERN SPECIES	19	ch25hl1.2 (ENSCCRG00000066314)	ENSCCRG00000055848	kti12 (ENSCCRG00000008630)	ENSCCRG00000005780	znf592 (ENSCCRG00000059821)	ENSCCRG00000060637	ENSCCRG00000072118	ENSCCRG00000056628	ENSCCRG00000073857	ENSCCRG00000021493	ENSCCRG00000038537	ENSCCRG00000043113	ctsh (ENSCCRG00000015996)	ENSCCRG00000038256	ENSCCRG00000071179	idh2 (ENSCCRG00000015188) ##22	znf710a (ENSCCRG00000015181)	sema4ba (ENSCCRG00000010579)	zgc:162879 (ENSCCRG00000010567)	serf2a (ENSCCRG00000056808)	ENSCCRG00000010558	pex11a (ENSCCRG00000064600)	gnrhr4 (ENSCCRG00000010556)	ENSCCRG00000002991	ENSCCRG00000054489	si:dkeyp-59c12.1 (ENSCCRG00000026676)	slco3a1a (ENSCCRG00000026671)	st8sia2 (ENSCCRG00000075703)	chd2 (ENSCCRG00000026693)	fam174b (ENSCCRG00000026685)	rgma (ENSCCRG00000026700)
Golden-line barbel	MODERN SPECIES	561										FRMD5 (ENSSGRG00000044773)	ENSSGRG00000044945	ctsh (ENSSGRG00000044947)	ctsh (ENSSGRG00000044948)	RASGRF1 (ENSSGRG00000044951)	ENSSGRG00000045053	idh2 (ENSSGRG00000045063) ##22	znf710a (ENSSGRG00000046347)	sema4ba (ENSSGRG00000046353)	zgc:162879 (ENSSGRG00000046373)	ENSSGRG00000046375	ENSSGRG00000046377	pex11a (ENSSGRG00000046378)	gnrhr4 (ENSSGRG00000046379)	ENSSGRG00000046380
Goldfish	MODERN SPECIES	716						ENSCARG00000028919	slc28a1 (ENSCARG00000028992)	ENSCARG00000029597	ENSCARG00000029654	ENSCARG00000029668	ENSCARG00000029684	FRMD5 (ENSCARG00000029722)	ctsh (ENSCARG00000029806)	RASGRF1 (ENSCARG00000030217)	ENSCARG00000031192	idh2 (ENSCARG00000031292) ##22	znf710a (ENSCARG00000033970)	sema4ba (ENSCARG00000034020)	zgc:162879 (ENSCARG00000034653)	serf2a (ENSCARG00000034660)	ENSCARG00000034669	ENSCARG00000034673	pex11a (ENSCARG00000034682)	gnrhr4 (ENSCARG00000034683)	ENSCARG00000034691	si:dkeyp-59c12.1 (ENSCARG00000034700)	ENSCARG00000034707	ENSCARG00000034718	slco3a1a (ENSCARG00000034723)	st8sia2 (ENSCARG00000034755)	fam174b (ENSCARG00000034768)
Cyprininae	ANCESTRAL SPECIES	30	ENSGT00940000154954.nb.a.b	ENSGT00940000163793.B.b	ENSGT00390000001338.c	ENSGT00390000002443.a	ENSGT00940000154470.b.d.c.b	ENSGT00390000015600.c.a.mb	ENSGT00940000158357.a	ENSGT00390000016025.b.b	ENSGT00940000158534.a.b.e	ENSGT00390000018044.a.d	ENSGT00940000156346.c.b.b	ENSGT00940000156800.k	ENSGT00940000160227.f	ENSGT00940000157599.c.a.a	ENSGT00390000012355.B.a.a	ENSGT00390000012547.a.h ##22	ENSGT00940000161170.d.b	ENSGT00940000154870.D.a.a.i	ENSGT00940000165251.f	ENSGT00940000165481.b	ENSGT00940000164943.a.a.e	ENSGT00390000014273.a.k	ENSGT01050000244841.A.a.b.qb.b.d	ENSGT00940000164158.B.b	ENSGT01080000257410.A.f.m.b	ENSGT01030000234535.F.a.a	ENSGT00730000111392.d	ENSGT00940000155888.fb	ENSGT00950000183112.a.g	ENSGT00940000160583.e	ENSGT00940000160523
Goldfish	MODERN SPECIES	37	ch25hl1.2 (ENSCARG00000056225)	ENSCARG00000056158	kti12 (ENSCARG00000056031)	nmba (ENSCARG00000056009)	sec11a (ENSCARG00000055939)	znf592 (ENSCARG00000055926)	slc28a1 (ENSCARG00000055499)	ENSCARG00000055438	ENSCARG00000055418	ENSCARG00000055405	FRMD5 (ENSCARG00000055332)	BLM (ENSCARG00000053907)	ctsh (ENSCARG00000053664)	RASGRF1 (ENSCARG00000051724)	ENSCARG00000051619	idh2 (ENSCARG00000049841) ##22	znf710a (ENSCARG00000049773)	sema4ba (ENSCARG00000049594)	zgc:162879 (ENSCARG00000049449)	ENSCARG00000049411	pex11a (ENSCARG00000049398)	gnrhr4 (ENSCARG00000049380)	si:dkeyp-59c12.1 (ENSCARG00000049316)	slco3a1a (ENSCARG00000049223)	st8sia2 (ENSCARG00000049153)	ENSCARG00000049108	fam174b (ENSCARG00000049091)	chd2 (ENSCARG00000036702)	rgma (ENSCARG00000036350)	ENSCARG00000036346	lysmd4 (ENSCARG00000036343)
Cyprininae_a	ANCESTRAL SPECIES	15	ENSGT00940000163793.B.b	ENSGT00390000001338.c	ENSGT00940000163793.A.b.f	ENSGT00390000002443.a	ENSGT00940000154470.b.d.c.b	ENSGT00390000015600.c.a.mb	ENSGT00940000158357.a	ENSGT00390000016025.b.b	ENSGT00940000158534.a.b.e	ENSGT00390000018044.a.d	ENSGT00940000156346.c.b.b	ENSGT00940000156800.k	ENSGT00940000160227.f	ENSGT00940000157599.c.a.a	ENSGT00390000012355.B.a.a	ENSGT00390000012547.a.h ##22	ENSGT00940000161170.d.b	ENSGT00940000154870.D.a.a.i	ENSGT00940000165251.f	ENSGT00940000165481.b	ENSGT00940000164943.a.a.e	ENSGT00390000014273.a.k	ENSGT01050000244841.A.a.b.qb.b.d	ENSGT00940000164158.B.b	ENSGT01080000257410.A.f.m.b	ENSGT01030000234535.F.a.a	ENSGT00730000111392.d	ENSGT00940000155888.fb	ENSGT00950000183112.a.g	ENSGT00940000160583.e	ENSGT00940000160523.n
Common carp reference	MODERN SPECIES	9	pstpip1a (ENSCCRG00000081624)	tspan3a (ENSCCRG00000008834)	ch25hl1.2 (ENSCCRG00000056195)	ENSCCRG00000078621	kti12 (ENSCCRG00000044301)	ENSCCRG00000044243	sec11a (ENSCCRG00000044118)	znf592 (ENSCCRG00000043900)	slc28a1 (ENSCCRG00000069981)	ENSCCRG00000043631	ENSCCRG00000043256	ENSCCRG00000006323	ctsh (ENSCCRG00000039428)	ENSCCRG00000014879	ENSCCRG00000068317	idh2 (ENSCCRG00000019833) ##22	znf710a (ENSCCRG00000080676)	sema4ba (ENSCCRG00000010869)	ENSCCRG00000082841	zgc:162879 (ENSCCRG00000081705)	ENSCCRG00000010844	ENSCCRG00000010549	pex11a (ENSCCRG00000010547)	ENSCCRG00000010649	si:dkeyp-59c12.1 (ENSCCRG00000029632)	slco3a1a (ENSCCRG00000026680)	st8sia2 (ENSCCRG00000057865)	fam174b (ENSCCRG00000002775)	chd2 (ENSCCRG00000026731)	rgma (ENSCCRG00000053972)	lysmd4 (ENSCCRG00000026903)
Golden-line barbel	MODERN SPECIES	423												ENSSGRG00000033480	ctsh (ENSSGRG00000033430)	RASGRF1 (ENSSGRG00000033137)	ENSSGRG00000033135	idh2 (ENSSGRG00000033134) ##22	znf710a (ENSSGRG00000033133)	sema4ba (ENSSGRG00000033132)	ENSSGRG00000033130	ENSSGRG00000033127	ENSSGRG00000033125	pex11a (ENSSGRG00000033124)	smu1a (ENSSGRG00000033025)	ELP1 (ENSSGRG00000032353)	TBC1D2 (ENSSGRG00000032316)	SLC44A1 (ENSSGRG00000032273)	ABCA1 (ENSSGRG00000028879)	nipsnap3a (ENSSGRG00000028775)	ENSSGRG00000028772	thg1l (ENSSGRG00000028765)	ADAM19 (ENSSGRG00000028676)
Zebrafish	MODERN SPECIES	9	ENSDARG00000097612	si:dkey-24l11.2 (ENSDARG00000068140)	ch25hl1.1 (ENSDARG00000039381)	slc28a1 (ENSDARG00000060879)	znf592 (ENSDARG00000060885)	sec11a (ENSDARG00000008936)	nmba (ENSDARG00000068144)	kti12 (ENSDARG00000054301)	ENSDARG00000078989	ENSDARG00000068152	FRMD5 (ENSDARG00000075942)	ENSDARG00000077089	ctsh (ENSDARG00000041108)	RASGRF1 (ENSDARG00000073824)	ENSDARG00000093286	idh2 (ENSDARG00000003795) ##22	znf710a (ENSDARG00000014680)	sema4ba (ENSDARG00000074414)	zgc:162879 (ENSDARG00000074163)	serf2a (ENSDARG00000075881)	ENSDARG00000001976	ENSDARG00000038121	pex11a (ENSDARG00000060707)	gnrhr4 (ENSDARG00000038116)	ENSDARG00000054048	si:dkeyp-59c12.1 (ENSDARG00000038112)	slco3a1a (ENSDARG00000018726)	st8sia2 (ENSDARG00000018788)	fam174b (ENSDARG00000068709)	ENSDARG00000095451	chd2 (ENSDARG00000060687)
Clupeiformes	ANCESTRAL SPECIES	4	ENSGT00390000001338	ENSGT00940000163793.A.b	ENSGT00390000002443	ENSGT00940000172895	ENSGT00390000015600.c.a	ENSGT00940000158357	ENSGT00390000016025.b	ENSGT00940000158534.a.b	ENSGT00390000018044.a	ENSGT00940000156346.c.b	ENSGT00940000156800	ENSGT00940000160227	ENSGT00940000157599.c.a	ENSGT00390000012355.B.a	ENSGT00940000165857.b	ENSGT00390000012547.a ##22	ENSGT00940000161170.d	ENSGT00940000154870.D.a.a	ENSGT00940000165251.g	ENSGT00940000164082.a.a	ENSGT00940000165481.b	ENSGT00940000164943.a.a	ENSGT00390000014273.a	ENSGT01050000244841.A.a.b.qb.b	ENSGT00950000182920.a	ENSGT00940000164158.B	ENSGT01080000257410.A.f.m	ENSGT01030000234535.F.a	ENSGT00730000111392	ENSGT00940000155888	ENSGT00940000174630
Denticle herring	MODERN SPECIES	8	si:dkey-24l11.2 (ENSDCDG00000014979)	ch25hl1.1 (ENSDCDG00000014972)	kti12 (ENSDCDG00000014966)	ENSDCDG00000014961	sec11a (ENSDCDG00000014952)	znf592 (ENSDCDG00000014945)	slc28a1 (ENSDCDG00000014049)	ENSDCDG00000013863	ENSDCDG00000013826	FRMD5 (ENSDCDG00000013073)	ENSDCDG00000010556	ctsh (ENSDCDG00000010064)	RASGRF1 (ENSDCDG00000010002)	ENSDCDG00000009985	ENSDCDG00000009977	idh2 (ENSDCDG00000009186) ##22	znf710a (ENSDCDG00000009083)	sema4ba (ENSDCDG00000009066)	sema4ba (ENSDCDG00000005800)	zgc:162879 (ENSDCDG00000005650)	SERF2 (ENSDCDG00000005642)	ENSDCDG00000035580	ENSDCDG00000035578	pex11a (ENSDCDG00000035576)	gnrhr4 (ENSDCDG00000035575)	ENSDCDG00000035573	si:dkeyp-59c12.1 (ENSDCDG00000035571)	slco3a1a (ENSDCDG00000035561)	st8sia2 (ENSDCDG00000035558)	fam174b (ENSDCDG00000035556)	chd2 (ENSDCDG00000035551)
Atlantic herring	MODERN SPECIES	19	ch25hl1.2 (ENSCHAG00000008524)	si:dkey-24l11.2 (ENSCHAG00000008501)	ch25hl1.1 (ENSCHAG00000008473)	ch25hl1.1 (ENSCHAG00000008452)	kti12 (ENSCHAG00000008164)	sec11a (ENSCHAG00000008075)	ENSCHAG00000008054	slc28a1 (ENSCHAG00000007904)	ENSCHAG00000007836	ENSCHAG00000007785	FRMD5 (ENSCHAG00000007021)	ctsh (ENSCHAG00000006673)	RASGRF1 (ENSCHAG00000005958)	ENSCHAG00000005905	ENSCHAG00000005889	idh2 (ENSCHAG00000001837) ##22	znf710a (ENSCHAG00000001672)	sema4ba (ENSCHAG00000001253)	zgc:162879 (ENSCHAG00000001101)	ENSCHAG00000001002	ENSCHAG00000000829	pex11a (ENSCHAG00000000785)	gnrhr4 (ENSCHAG00000000753)	ENSCHAG00000000735	si:dkeyp-59c12.1 (ENSCHAG00000000706)	SLCO3A1 (ENSCHAG00000000652)	rgma (ENSCHAG00000024121)	ENSCHAG00000024112	lysmd4 (ENSCHAG00000024108)	ARRDC4 (ENSCHAG00000024092)	nr2f2 (ENSCHAG00000024060)
Spotted gar	MODERN SPECIES	669	loxl1 (ENSLOCG00000014268)	insyn1 (ENSLOCG00000014270)	cd276 (ENSLOCG00000014271)	ubl7a (ENSLOCG00000014272)	ENSLOCG00000014280	ENSLOCG00000014283	ube2q1 (ENSLOCG00000014289)	CHRNA3 (ENSLOCG00000014294)	chrna5 (ENSLOCG00000014297)	ENSLOCG00000014302	ctsh (ENSLOCG00000014308)	RASGRF1 (ENSLOCG00000014310)	ENSLOCG00000017949	si:ch211-107o10.3 (ENSLOCG00000014321)	tmed3 (ENSLOCG00000014324)	idh2 (ENSLOCG00000014327) ##22	znf710a (ENSLOCG00000014332)	sema4ba (ENSLOCG00000014333)	ENSLOCG00000014338	zgc:162879 (ENSLOCG00000014347)	serf2a (ENSLOCG00000014349)	ENSLOCG00000014352	ENSLOCG00000014355	gnrhr4 (ENSLOCG00000014360)	ENSLOCG00000014364	pex11a (ENSLOCG00000014367)	ENSLOCG00000014370	si:dkeyp-59c12.1 (ENSLOCG00000014372)	slco3a1a (ENSLOCG00000014374)	st8sia2 (ENSLOCG00000014381)	fam174b (ENSLOCG00000014386)
Reedfish	MODERN SPECIES	8															tmed3 (ENSECRG00000018807)	idh2 (ENSECRG00000018564) ##22	znf710a (ENSECRG00000018512)	sema4ba (ENSECRG00000018495)	ENSECRG00000017824	zgc:162879 (ENSECRG00000017712)	serf2a (ENSECRG00000017677)	ENSECRG00000017641	gnrhr4 (ENSECRG00000016482)	pex11a (ENSECRG00000016319)	ENSECRG00000016309	si:dkeyp-59c12.1 (ENSECRG00000016290)	slco3a1a (ENSECRG00000016265)	st8sia2 (ENSECRG00000016241)	fam174b (ENSECRG00000016224)	chd2 (ENSECRG00000016100)	rgma (ENSECRG00000016069)
Sarcopterygii	ANCESTRAL SPECIES	350															ENSGT00940000154870.D	ENSGT00390000012547.a ##22	ENSGT00940000161170	ENSGT00950000182920.a	ENSGT00390000014273.a	ENSGT00390000009995	ENSGT01050000244841.A.a.b	ENSGT00530000063712.a.a	ENSGT00530000064251	ENSGT00970000193421.C.b	ENSGT00940000154876.b
Coelacanth	MODERN SPECIES	272			DET1 (ENSLACG00000018400)	ENSLACG00000018350	ENSLACG00000018342	ENSLACG00000018339	ANPEP (ENSLACG00000018316)	ENSLACG00000018283	ENSLACG00000018261	GNRHR1/III (ENSLACG00000018198)	WDR93 (ENSLACG00000018143)	PEX11A (ENSLACG00000018139)	PLIN1 (ENSLACG00000018121)	si:dkeyp-59c12.1 (ENSLACG00000018114)	SEMA4B (ENSLACG00000018085)	IDH2 (ENSLACG00000017975) ##22	ZNF710 (ENSLACG00000017953)	KIF7 (ENSLACG00000017850)	FANCI (ENSLACG00000017786)	POLG (ENSLACG00000017742)	RHCG (ENSLACG00000017383)	TICRR (ENSLACG00000017262)	rlbp1a (ENSLACG00000017193)	ABHD2 (ENSLACG00000017063)	MFGE8 (ENSLACG00000016909)	HAPLN3 (ENSLACG00000016863)	ACAN (ENSLACG00000016592)	CIB1 (ENSLACG00000016546)	GDPGP1 (ENSLACG00000016538)	TTLL13 (ENSLACG00000016486)	NGRN (ENSLACG00000016387)
Tetrapoda	ANCESTRAL SPECIES	50	ENSGT00690000102225	ENSGT00940000157220	ENSGT00940000158881	ENSGT01030000234638.b.b.c.a	ENSGT00950000185474	ENSGT00940000159320	ENSGT00940000164520	ENSGT00390000009453	ENSGT00940000156813	ENSGT00390000011608	ENSGT00390000014472	ENSGT00940000161367	ENSGT00390000016718	ENSGT00940000158927	ENSGT00940000154870.D	ENSGT00390000012547.a ##22	ENSGT00940000161170	ENSGT00530000064251	ENSGT00970000193421.C.b	ENSGT00940000154876.b
Amniota	ANCESTRAL SPECIES	62	ENSGT00690000102225	ENSGT00940000157220	ENSGT00940000158881	ENSGT01030000234638.b.b.c.a	ENSGT00950000185474	ENSGT00940000159320	ENSGT00940000164520	ENSGT00390000009453	ENSGT00940000156813	ENSGT00390000011608	ENSGT00390000014472	ENSGT00940000161367	ENSGT00390000016718	ENSGT00940000158927	ENSGT00940000154870.D	ENSGT00390000012547.a ##22	ENSGT00940000161170	ENSGT00530000064251	ENSGT00970000193421.C.b	ENSGT00940000154876.b
Sauria	ANCESTRAL SPECIES	10	ENSGT00690000102225	ENSGT00940000157220	ENSGT00940000158881	ENSGT01030000234638.b.b.c.a	ENSGT00950000185474	ENSGT00940000159320	ENSGT00940000164520	ENSGT00390000009453	ENSGT00940000156813	ENSGT00390000011608	ENSGT00390000014472	ENSGT00940000161367	ENSGT00390000016718	ENSGT00940000158927	ENSGT00940000154870.D	ENSGT00390000012547.a ##22	ENSGT00940000161170	ENSGT00530000064251	ENSGT00940000154876.b	ENSGT00530000063712.a.a	ENSGT00970000193421.C.b	ENSGT00940000159833	ENSGT00390000012355.B.a	ENSGT00940000157599	ENSGT00940000160227	ENSGT00940000156800	ENSGT00510000048144	ENSGT00940000156346	ENSGT00530000063675.a	ENSGT01040000240503.A.a.a	ENSGT00390000018400
Lepidosauria	ANCESTRAL SPECIES	19	ENSGT00390000008502	ENSGT00690000102225	ENSGT00940000157220	ENSGT00940000158881	ENSGT01030000234638.b.b.c.a	ENSGT00940000159320	ENSGT00940000164520	ENSGT00390000009453	ENSGT00940000156813	ENSGT00390000011608	ENSGT00390000014472	ENSGT00940000161367	ENSGT00390000016718	ENSGT00940000158927	ENSGT00940000154870.D	ENSGT00390000012547.a ##22	ENSGT00940000161170	ENSGT00530000064251	ENSGT00940000154876.b	ENSGT00530000063712.a.a	ENSGT00940000159833	ENSGT00940000157599	ENSGT00940000160227	ENSGT00940000156800	ENSGT00510000048144	ENSGT00940000156346	ENSGT00530000063675.a	ENSGT01040000240503.A.a.a	ENSGT00390000018400	ENSGT00390000016791	ENSGT00390000017697.a
Episquamata	ANCESTRAL SPECIES	9	ENSGT00390000008502	ENSGT00690000102225	ENSGT00940000157220	ENSGT00940000158881	ENSGT01030000234638.b.b.c.a	ENSGT00940000159320	ENSGT00940000164520	ENSGT00390000009453	ENSGT00940000156813	ENSGT00390000011608	ENSGT00390000014472	ENSGT00940000161367	ENSGT00390000016718	ENSGT00940000158927	ENSGT00940000154870.D	ENSGT00390000012547.a ##22	ENSGT00940000161170	ENSGT00530000064251	ENSGT00940000154876.b	ENSGT00530000063712.a.a	ENSGT00940000157599	ENSGT00940000160227	ENSGT00940000156800	ENSGT00510000048144	ENSGT00940000156346	ENSGT00530000063675.a	ENSGT01040000240503.A.a.a	ENSGT00390000018400	ENSGT00390000016791	ENSGT00390000017697.a	ENSGT00940000159819
Laterata	ANCESTRAL SPECIES	16	ENSGT00390000008502	ENSGT00690000102225	ENSGT00940000157220	ENSGT00940000158881	ENSGT01030000234638.b.b.c.a	ENSGT00940000159320	ENSGT00940000164520	ENSGT00390000009453	ENSGT00940000156813	ENSGT00390000011608	ENSGT00390000014472	ENSGT00940000161367	ENSGT00390000016718	ENSGT00940000158927	ENSGT00940000154870.D	ENSGT00390000012547.a ##22	ENSGT00940000161170	ENSGT00530000064251	ENSGT00940000154876.b	ENSGT00530000063712.a.a	ENSGT01050000244841.A.a.b	ENSGT00730000111185	ENSGT00940000157599	ENSGT00940000160227	ENSGT00940000156800	ENSGT00510000048144	ENSGT00940000156346	ENSGT00530000063675.a	ENSGT01040000240503.A.a.a	ENSGT00390000018400	ENSGT00390000016791
Common wall lizard	MODERN SPECIES	5	MFAP1 (ENSPMRG00000022905)	FURIN (ENSPMRG00000022898)	ENSPMRG00000022872	ENSPMRG00000022854	MAN2A2 (ENSPMRG00000022837)	UNC45A (ENSPMRG00000022830)	ENSPMRG00000022825	PRC1 (ENSPMRG00000022818)	VPS33B (ENSPMRG00000022814)	HDDC3 (ENSPMRG00000022807)	NGRN (ENSPMRG00000022805)	TTLL13 (ENSPMRG00000022799)	ENSPMRG00000022796	CIB1 (ENSPMRG00000022792)	SEMA4B (ENSPMRG00000022778)	IDH2 (ENSPMRG00000022769) ##22	ZNF710 (ENSPMRG00000022762)	ENSPMRG00000022761	ARPIN (ENSPMRG00000022756)	ANPEP (ENSPMRG00000022502)	ENSPMRG00000022444	ENSPMRG00000022441	RASGRF1 (ENSPMRG00000021640)	CTSH (ENSPMRG00000021435)	BLM (ENSPMRG00000021298)	WDR76 (ENSPMRG00000021251)	ENSPMRG00000021245	ENSPMRG00000021226	GOLM2 (ENSPMRG00000021201)	CTDSPL2 (ENSPMRG00000021187)	EIF3J (ENSPMRG00000021176)
Argentine black and white tegu	MODERN SPECIES	46	SERINC4 (ENSSMRG00000019449)	HYPK (ENSSMRG00000019450)	MFAP1 (ENSSMRG00000019451)	FURIN (ENSSMRG00000019452)	FES (ENSSMRG00000019453)	MAN2A2 (ENSSMRG00000019623)	UNC45A (ENSSMRG00000020809)	ENSSMRG00000021149	PRC1 (ENSSMRG00000021158)	VPS33B (ENSSMRG00000021324)	HDDC3 (ENSSMRG00000021521)	TTLL13 (ENSSMRG00000021522)	GDPGP1 (ENSSMRG00000021523)	CIB1 (ENSSMRG00000021524)	SEMA4B (ENSSMRG00000021528)	IDH2 (ENSSMRG00000021530) ##22	ZNF710 (ENSSMRG00000021531)	ANPEP (ENSSMRG00000021533)	ENSSMRG00000021534	ENSSMRG00000021535	RASGRF1 (ENSSMRG00000021536)	CTSH (ENSSMRG00000021537)	ENSSMRG00000021538	WDR76 (ENSSMRG00000021539)	FRMD5 (ENSSMRG00000021540)	GOLM2 (ENSSMRG00000021541)	CTDSPL2 (ENSSMRG00000021542)	EIF3J (ENSSMRG00000021543)	SPG11 (ENSSMRG00000021544)	CIAO2A (ENSSMRG00000021545)	ADAMTS7 (ENSSMRG00000021546)
Toxicofera	ANCESTRAL SPECIES	52											ENSGT00390000014472	ENSGT00940000161367	ENSGT00390000016718	ENSGT00940000158927	ENSGT00940000154870.D	ENSGT00390000012547.a ##22	ENSGT00940000161170	ENSGT00940000154876.b	ENSGT00950000183007.b.i.a.b	ENSGT00950000183007.a.a.b.eb	ENSGT00940000154757	ENSGT00940000158522	ENSGT01100000263845	ENSGT00390000012355.B.b	ENSGT01050000244841.A.a.b	ENSGT00940000157599	ENSGT00940000160227	ENSGT00940000156800	ENSGT00510000048144	ENSGT00940000156346	ENSGT00530000063675.a
Elapidae	ANCESTRAL SPECIES	12	ENSGT00390000009048.a.a	ENSGT00940000158701	ENSGT00390000011891	ENSGT00940000156677	ENSGT00950000183076.a.b.b.a.a	ENSGT00950000182965.a.b.b.a	ENSGT00940000157475	ENSGT01030000234519.e.b	ENSGT00940000155837	ENSGT00940000164520	ENSGT00390000014472	ENSGT00940000161367	ENSGT00390000016718	ENSGT00940000158927	ENSGT00940000154870.D	ENSGT00390000012547.a ##22	ENSGT00940000161170	ENSGT00940000154876.b	ENSGT01100000263845	ENSGT00390000012355.B.b	ENSGT01050000244841.A.a.b	ENSGT00940000157599.g	ENSGT00940000160227	ENSGT00940000156800	ENSGT00510000048144	ENSGT00940000156346	ENSGT00530000063675.a	ENSGT01040000240503.A.a.a	ENSGT00390000018400	ENSGT00390000016791	ENSGT00390000017697.a
Elapidae_a	ANCESTRAL SPECIES	37	ENSGT00390000009048.a.a	ENSGT00940000158701	ENSGT00390000011891	ENSGT00940000156677	ENSGT00950000183076.a.b.b.a.a	ENSGT00950000182965.a.b.b.a	ENSGT00940000157475	ENSGT01030000234519.e.b	ENSGT00940000155837	ENSGT00940000164520	ENSGT00390000014472	ENSGT00940000161367	ENSGT00390000016718	ENSGT00940000158927	ENSGT00940000154870.D	ENSGT00390000012547.a ##22	ENSGT00940000161170	ENSGT00940000154876.b	ENSGT01100000263845	ENSGT00390000012355.B.b	ENSGT01050000244841.A.a.b	ENSGT00940000157599.g	ENSGT00940000160227	ENSGT00940000156800	ENSGT00510000048144	ENSGT00940000156346.h	ENSGT00940000156346.g	ENSGT00530000063675.a	ENSGT01040000240503.A.a.a	ENSGT00390000018400	ENSGT00390000016791
Acanthophiinae	ANCESTRAL SPECIES	37	ENSGT00390000009048.a.a	ENSGT00940000158701	ENSGT00390000011891	ENSGT00940000156677	ENSGT00950000183076.a.b.b.a.a	ENSGT00950000182965.a.b.b.a	ENSGT00940000157475	ENSGT01030000234519.e.b	ENSGT00940000155837	ENSGT00940000164520	ENSGT00390000014472	ENSGT00940000161367	ENSGT00390000016718	ENSGT00940000158927	ENSGT00940000154870.D	ENSGT00390000012547.a ##22	ENSGT00940000161170	ENSGT00940000154876.b	ENSGT00940000157599.g	ENSGT00940000160227	ENSGT00940000156800	ENSGT00510000048144	ENSGT00940000156346.h	ENSGT00940000156346.g	ENSGT00530000063675.a	ENSGT01040000240503.A.a.a	ENSGT00390000018400	ENSGT00390000016791	ENSGT00940000159819	ENSGT00390000006043	ENSGT00940000162591
Mainland tiger snake	MODERN SPECIES	231	ENSNSUG00000020204	ENSNSUG00000020205	PPIP5K1 (ENSNSUG00000020218)	MAP1A (ENSNSUG00000020229)	ENSNSUG00000020232	TUBGCP4 (ENSNSUG00000020233)	IQGAP1 (ENSNSUG00000020234)	MORF4L2 (ENSNSUG00000020250)	UACA (ENSNSUG00000020251)	TLE3 (ENSNSUG00000020252)	KIF23 (ENSNSUG00000020253)	TTLL13 (ENSNSUG00000020255)	GDPGP1 (ENSNSUG00000020256)	CIB1 (ENSNSUG00000020257)	SEMA4B (ENSNSUG00000020258)	IDH2 (ENSNSUG00000020259) ##22	ZNF710 (ENSNSUG00000020267)	ANPEP (ENSNSUG00000020268)	ENSNSUG00000020270	RASGRF1 (ENSNSUG00000020273)	CTSH (ENSNSUG00000020275)	ENSNSUG00000020276	WDR76 (ENSNSUG00000020277)	FRMD5 (ENSNSUG00000020278)	ENSNSUG00000020279	CTDSPL2 (ENSNSUG00000020281)	EIF3J (ENSNSUG00000020283)	CIAO2A (ENSNSUG00000020284)
Eastern brown snake	MODERN SPECIES	43	ENSPTXG00000009854	PPIP5K1 (ENSPTXG00000009857)	MAP1A (ENSPTXG00000009910)	TUBGCP4 (ENSPTXG00000009925)	IQGAP1 (ENSPTXG00000009968)	MORF4L2 (ENSPTXG00000015254)	UACA (ENSPTXG00000015260)	TLE3 (ENSPTXG00000015273)	KIF23 (ENSPTXG00000015417)	ENSPTXG00000015425	ENSPTXG00000015426	TTLL13 (ENSPTXG00000015428)	GDPGP1 (ENSPTXG00000015430)	CIB1 (ENSPTXG00000015432)	SEMA4B (ENSPTXG00000015433)	IDH2 (ENSPTXG00000015434) ##22	ZNF710 (ENSPTXG00000015435)	ANPEP (ENSPTXG00000015436)	ENSPTXG00000015441	ENSPTXG00000015471	ENSPTXG00000015476	CTSH (ENSPTXG00000015478)	BLM (ENSPTXG00000015481)	WDR76 (ENSPTXG00000015484)	ENSPTXG00000015486	ENSPTXG00000015487	CTDSPL2 (ENSPTXG00000015488)	EIF3J (ENSPTXG00000015491)	SPG11 (ENSPTXG00000015497)	ADAMTS7 (ENSPTXG00000015512)	GLCE (ENSPTXG00000015519)
Blue-lipped sea krait	MODERN SPECIES	3097												TTLL13 (ENSLLTG00000004252)	GDPGP1 (ENSLLTG00000004294)	ENSLLTG00000004305	SEMA4B (ENSLLTG00000004319)	IDH2 (ENSLLTG00000004475) ##22	ZNF710 (ENSLLTG00000009854)
Indian cobra	MODERN SPECIES	14	PPIP5K1 (ENSNNAG00000017135)	MAP1A (ENSNNAG00000017114)	ENSNNAG00000017106	TUBGCP4 (ENSNNAG00000017090)	IQGAP1 (ENSNNAG00000017038)	MORF4L2 (ENSNNAG00000017007)	UACA (ENSNNAG00000016986)	TLE3 (ENSNNAG00000016943)	KIF23 (ENSNNAG00000016252)	ENSNNAG00000016169	ENSNNAG00000016158	TTLL13 (ENSNNAG00000016096)	GDPGP1 (ENSNNAG00000016088)	CIB1 (ENSNNAG00000016075)	SEMA4B (ENSNNAG00000016058)	IDH2 (ENSNNAG00000015195) ##22	ZNF710 (ENSNNAG00000015127)	ANPEP (ENSNNAG00000015104)	ENSNNAG00000014995	RASGRF1 (ENSNNAG00000014651)	CTSH (ENSNNAG00000014614)	BLM (ENSNNAG00000014581)	WDR76 (ENSNNAG00000014501)	FRMD5 (ENSNNAG00000014437)	GOLM2 (ENSNNAG00000014360)	CTDSPL2 (ENSNNAG00000014328)	EIF3J (ENSNNAG00000014307)	SPG11 (ENSNNAG00000014243)	CIAO2A (ENSNNAG00000014216)	ADAMTS7 (ENSNNAG00000012990)	GLCE (ENSNNAG00000012927)
Lizard	MODERN SPECIES	16																ENSACAG00000009784 ##22	ENSACAG00000009870
tuatara	MODERN SPECIES	766							ENSSPUG00000004518	MAN2A2 (ENSSPUG00000004487)	ENSSPUG00000004370	ENSSPUG00000004354	VPS33B (ENSSPUG00000004333)	HDDC3 (ENSSPUG00000004327)	TTLL13 (ENSSPUG00000004267)	CIB1 (ENSSPUG00000004225)	SEMA4B (ENSSPUG00000004207)	IDH2 (ENSSPUG00000004186) ##22	ZNF710 (ENSSPUG00000004174)	ENSSPUG00000004164	ARPIN (ENSSPUG00000004157)
Archelosauria	ANCESTRAL SPECIES	13	ENSGT00690000102225	ENSGT00940000157220	ENSGT00940000158881	ENSGT01030000234638.b.b.c.a	ENSGT00950000185474	ENSGT00940000159320	ENSGT00940000164520	ENSGT00390000009453	ENSGT00940000156813	ENSGT00390000011608	ENSGT00390000014472	ENSGT00940000161367	ENSGT00390000016718	ENSGT00940000158927	ENSGT00940000154870.D	ENSGT00390000012547.a ##22	ENSGT00940000161170	ENSGT00530000064251	ENSGT00940000154876.b	ENSGT00530000063712.a.a	ENSGT00970000193421.C.b	ENSGT00940000159833	ENSGT00390000012355.B.a	ENSGT00940000157599	ENSGT00940000160227	ENSGT00940000156800	ENSGT00510000048144	ENSGT00940000156346	ENSGT00530000063675.a	ENSGT01040000240503.A.a.a	ENSGT00390000018400
Archosauria	ANCESTRAL SPECIES	9	ENSGT00390000008502	ENSGT00690000102225	ENSGT00940000157220	ENSGT00940000158881	ENSGT01030000234638.b.b.c.a	ENSGT00950000185474	ENSGT00940000159320	ENSGT00940000164520	ENSGT00390000009453	ENSGT00940000156813	ENSGT00390000011608	ENSGT00940000161367	ENSGT00390000016718	ENSGT00940000158927	ENSGT00940000154870.D	ENSGT00390000012547.a ##22	ENSGT00940000161170	ENSGT00940000154876.b	ENSGT00530000063712.a.a	ENSGT00970000193421.C.b	ENSGT00940000159833	ENSGT00390000012355.B.a	ENSGT00940000157599	ENSGT00940000160227	ENSGT00940000156800	ENSGT00510000048144	ENSGT00940000156346	ENSGT00530000063675.a	ENSGT01040000240503.A.a.a	ENSGT00390000018400	ENSGT00390000016791
Aves	ANCESTRAL SPECIES	14	ENSGT00390000008502	ENSGT00690000102225	ENSGT00940000157220	ENSGT00940000158881	ENSGT01030000234638.b.b.c.a	ENSGT00950000185474	ENSGT00940000159320	ENSGT00940000164520	ENSGT00390000009453	ENSGT00940000156813	ENSGT00390000011608	ENSGT00940000161367	ENSGT00390000016718	ENSGT00940000158927	ENSGT00940000154870.D	ENSGT00390000012547.a ##22	ENSGT00940000161170	ENSGT00970000193421.C.b	ENSGT00940000154876.b	ENSGT00530000063712.a.a	ENSGT00940000159833	ENSGT00390000012355.B.a	ENSGT00940000157599	ENSGT00940000160227	ENSGT00940000156800	ENSGT00510000048144	ENSGT00940000156346	ENSGT00530000063675.a	ENSGT01040000240503.A.a.a	ENSGT00390000018400	ENSGT00390000016791
Neognathae	ANCESTRAL SPECIES	11	ENSGT00390000008502	ENSGT00690000102225	ENSGT00940000157220	ENSGT00940000158881	ENSGT01030000234638.b.b.c.a	ENSGT00950000185474	ENSGT00940000159320	ENSGT00940000164520	ENSGT00390000009453	ENSGT00940000156813	ENSGT00390000011608	ENSGT00940000161367	ENSGT00390000016718	ENSGT00940000158927	ENSGT00940000154870.D	ENSGT00390000012547.a ##22	ENSGT00940000161170	ENSGT00970000193421.C.b	ENSGT00940000154876.b	ENSGT00530000063712.a.a.g	ENSGT00530000063712.a.a.h	ENSGT00940000159833	ENSGT00390000012355.B.a	ENSGT00940000157599	ENSGT00940000160227	ENSGT00940000156800	ENSGT00510000048144	ENSGT00940000156346	ENSGT00530000063675.a	ENSGT01040000240503.A.a.a	ENSGT00390000018400
Galloanserae	ANCESTRAL SPECIES	10	ENSGT00390000008502	ENSGT00690000102225	ENSGT00940000157220	ENSGT00940000158881	ENSGT01030000234638.b.b.c.a	ENSGT00950000185474	ENSGT00940000159320	ENSGT00940000164520	ENSGT00390000009453	ENSGT00940000156813	ENSGT00390000011608	ENSGT00940000161367	ENSGT00390000016718	ENSGT00940000158927	ENSGT00940000154870.D	ENSGT00390000012547.a ##22	ENSGT00940000161170	ENSGT00970000193421.C.b	ENSGT00940000154876.b	ENSGT00530000063712.a.a.g	ENSGT00530000063712.a.a.h	ENSGT01050000244841.A.a.b	ENSGT00940000159833	ENSGT00390000012355.B.a	ENSGT00940000157599	ENSGT00940000160227	ENSGT00940000156800	ENSGT00510000048144	ENSGT00940000156346	ENSGT00530000063675.a	ENSGT01040000240503.A.a.a
Anatidae	ANCESTRAL SPECIES	36	ENSGT00940000165251	ENSGT01030000234623.a.b.b	ENSGT00390000008502	ENSGT00690000102225	ENSGT00940000157220	ENSGT00940000158881	ENSGT01030000234638.b.b.c.a	ENSGT00940000159320	ENSGT00940000164520	ENSGT00390000009453	ENSGT00940000156813	ENSGT00940000161367	ENSGT00390000016718	ENSGT00940000158927	ENSGT00940000154870.D	ENSGT00390000012547.a ##22	ENSGT00940000161170	ENSGT00970000193421.C.b	ENSGT00940000154876.b	ENSGT00530000063712.a.a.g	ENSGT00530000063712.a.a.h	ENSGT01050000244841.A.a.b	ENSGT00730000111185	ENSGT00390000005869.a	ENSGT00390000014273.b	ENSGT00940000164422	ENSGT00940000158423	ENSGT00940000159833	ENSGT00390000012355.B.a	ENSGT00940000157599	ENSGT00940000160227
Duck	MODERN SPECIES	2	TUBGCP4 (ENSAPLG00000010724)	TP53BP1 (ENSAPLG00000010574)	MAP1A (ENSAPLG00000027744)	PPIP5K1 (ENSAPLG00000010796)	ENSAPLG00000010625	PDIA3 (ENSAPLG00000010321)	ELL3 (ENSAPLG00000023858)	FURIN (ENSAPLG00000005906)	FES (ENSAPLG00000005644)	UNC45A (ENSAPLG00000004720)	MAN2A2 (ENSAPLG00000005234)	TTLL13 (ENSAPLG00000003844)	CIB1 (ENSAPLG00000010975)	SEMA4B (ENSAPLG00000010610)	VPS33B (ENSAPLG00000003869)	IDH2 (ENSAPLG00000027640) ##22	ZNF710 (ENSAPLG00000026218)	AP3S2 (ENSAPLG00000005458)	ANPEP (ENSAPLG00000005574)	ENSAPLG00000017865	TMED3 (ENSAPLG00000006204)	ENSAPLG00000019685	ENSAPLG00000017978	RASGRF1 (ENSAPLG00000006206)	CTSH (ENSAPLG00000006722)	BLM (ENSAPLG00000006878)	WDR76 (ENSAPLG00000007086)	FRMD5 (ENSAPLG00000007330)	GOLM2 (ENSAPLG00000007781)	CTDSPL2 (ENSAPLG00000007949)	EIF3J (ENSAPLG00000008484)
Pink-footed goose	MODERN SPECIES	52	ENSABRG00000004429	ENSABRG00000004448	SERINC4 (ENSABRG00000004460)	MFAP1 (ENSABRG00000004507)	FURIN (ENSABRG00000004517)	FES (ENSABRG00000004539)	MAN2A2 (ENSABRG00000004608)	UNC45A (ENSABRG00000004685)	ENSABRG00000004728	PRC1 (ENSABRG00000004796)	VPS33B (ENSABRG00000004867)	TTLL13 (ENSABRG00000005796)	GDPGP1 (ENSABRG00000005831)	ENSABRG00000005836	SEMA4B (ENSABRG00000005843)	IDH2 (ENSABRG00000005863) ##22	ZNF710 (ENSABRG00000005877)	AP3S2 (ENSABRG00000005881)	ANPEP (ENSABRG00000005895)	ENSABRG00000006916	ENSABRG00000006919	ENSABRG00000006921	TMED3 (ENSABRG00000006924)	ENSABRG00000006929	RASGRF1 (ENSABRG00000006932)	CTSH (ENSABRG00000006940)	BLM (ENSABRG00000006971)	WDR76 (ENSABRG00000007002)	FRMD5 (ENSABRG00000007028)	GOLM2 (ENSABRG00000007038)	CTDSPL2 (ENSABRG00000007046)
Phasianidae	ANCESTRAL SPECIES	11	ENSGT00390000008502	ENSGT00690000102225	ENSGT00940000157220	ENSGT00940000158881	ENSGT01030000234638.b.b.c.a	ENSGT00950000185474	ENSGT00940000159320	ENSGT00940000164520	ENSGT00390000009453	ENSGT00940000156813	ENSGT00390000011608	ENSGT00940000161367	ENSGT00390000016718	ENSGT00940000158927	ENSGT00940000154870.D	ENSGT00390000012547.a ##22	ENSGT00940000161170.b	ENSGT00970000193421.C.b	ENSGT00940000154876.b	ENSGT00530000063712.a.a.g	ENSGT00530000063712.a.a.h	ENSGT01050000244841.A.a.b	ENSGT00940000157599	ENSGT00940000160227	ENSGT00940000156800	ENSGT00510000048144	ENSGT00940000156346	ENSGT00530000063675.a	ENSGT01040000240503.A.a.a	ENSGT00390000018400	ENSGT00390000016791
Phasianidae_b	ANCESTRAL SPECIES	11	ENSGT01030000234623.a.b.b	ENSGT00390000008502	ENSGT00690000102225	ENSGT00940000157220	ENSGT00940000158881	ENSGT01030000234638.b.b.c.a	ENSGT00950000185474	ENSGT00940000159320	ENSGT00390000009453	ENSGT00940000156813	ENSGT00390000011608	ENSGT00940000161367	ENSGT00390000016718	ENSGT00940000158927	ENSGT00940000154870.D	ENSGT00390000012547.a ##22	ENSGT00940000161170.b	ENSGT00970000193421.C.b	ENSGT00940000154876.b	ENSGT00530000063712.a.a.g	ENSGT00530000063712.a.a.h	ENSGT01050000244841.A.a.b	ENSGT00940000159833	ENSGT00390000012355.B.a	ENSGT00940000157599	ENSGT00940000160227	ENSGT00940000156800	ENSGT00510000048144	ENSGT00940000156346	ENSGT00530000063675.a	ENSGT01040000240503.A.a.a
Chicken	MODERN SPECIES	1	SERINC4 (ENSGALG00010000061)	HYPK (ENSGALG00010000060)	MFAP1 (ENSGALG00010000059)	FURIN (ENSGALG00010000058)	FES (ENSGALG00010000049)	MAN2A2 (ENSGALG00010000048)	ENSGALG00010000057	UNC45A (ENSGALG00010000056)	PRC1 (ENSGALG00010000055)	VPS33B (ENSGALG00010000054)	HDDC3 (ENSGALG00010000053)	TTLL13 (ENSGALG00010000052)	GDPGP1 (ENSGALG00010000051)	CIB1 (ENSGALG00010000050)	SEMA4B (ENSGALG00010020293)	IDH2 (ENSGALG00010020277) ##22	ZNF710 (ENSGALG00010020257)	AP3S2 (ENSGALG00010015942)	ANPEP (ENSGALG00010015905)	ENSGALG00010015903	MESP1 (ENSGALG00010015956)	GNRHR (ENSGALG00010016446)	TMED3 (ENSGALG00010016433)	ENSGALG00010016421	RASGRF1 (ENSGALG00010016415)	CTSH (ENSGALG00010016411)	BLM (ENSGALG00010016393)	WDR76 (ENSGALG00010016378)	FRMD5 (ENSGALG00010016374)	CASC4 (ENSGALG00010016350)	CTDSPL2 (ENSGALG00010016317)
Turkey	MODERN SPECIES	3	SPG11 (ENSMGAG00000010324)	EIF3J (ENSMGAG00000020198)	CTDSPL2 (ENSMGAG00000010285)	FRMD5 (ENSMGAG00000016494)	ENSMGAG00000022869	WDR76 (ENSMGAG00000010407)	ENSMGAG00000010473	ENSMGAG00000010582	ENSMGAG00000012254	ENSMGAG00000010523	ENSMGAG00000010507	ENSMGAG00000010510	ENSMGAG00000017180	ENSMGAG00000010489	ENSMGAG00000017294	ENSMGAG00000004597 ##22	ENSMGAG00000021568	ENSMGAG00000021657	SEMA4B (ENSMGAG00000010484)	ENSMGAG00000010525	ENSMGAG00000020677	ENSMGAG00000010652	ENSMGAG00000010721	ENSMGAG00000010738	ENSMGAG00000010746	ENSMGAG00000010444	ENSMGAG00000010594	SERINC4 (ENSMGAG00000010567)	ENSMGAG00000010563	MFAP1 (ENSMGAG00000018931)	ENSMGAG00000019676
Japanese quail	MODERN SPECIES	1	PDIA3 (ENSCJPG00005000556)	ENSCJPG00005000552	SERINC4 (ENSCJPG00005000546)	HYPK (ENSCJPG00005000368)	MFAP1 (ENSCJPG00005000359)	FURIN (ENSCJPG00005000344)	MAN2A2 (ENSCJPG00005000059)	UNC45A (ENSCJPG00005021161)	ENSCJPG00005021160	PRC1 (ENSCJPG00005021159)	HDDC3 (ENSCJPG00005021147)	TTLL13 (ENSCJPG00005021146)	GDPGP1 (ENSCJPG00005021145)	CIB1 (ENSCJPG00005021144)	SEMA4B (ENSCJPG00005021143)	IDH2 (ENSCJPG00005021141) ##22	ZNF710 (ENSCJPG00005021140)	AP3S2 (ENSCJPG00005021138)	ENSCJPG00005021137	ENSCJPG00005021136	ENSCJPG00005021135	TMED3 (ENSCJPG00005021134)	ENSCJPG00005021133	ANPEP (ENSCJPG00005021131)	RASGRF1 (ENSCJPG00005021129)	CTSH (ENSCJPG00005021127)	BLM (ENSCJPG00005021125)	WDR76 (ENSCJPG00005021123)	FRMD5 (ENSCJPG00005021120)	GOLM2 (ENSCJPG00005021117)	CTDSPL2 (ENSCJPG00005021113)
Neognathae_b	ANCESTRAL SPECIES	13	ENSGT01030000234623.a.b.b	ENSGT00390000008502	ENSGT00690000102225	ENSGT00940000157220	ENSGT00940000158881	ENSGT01030000234638.b.b.c.a	ENSGT00940000159320	ENSGT00940000164520	ENSGT00390000009453	ENSGT00940000156813	ENSGT00390000011608	ENSGT00940000161367	ENSGT00390000016718	ENSGT00940000158927	ENSGT00940000154870.D	ENSGT00390000012547.a ##22	ENSGT00940000161170	ENSGT00970000193421.C.b	ENSGT00940000154876.b	ENSGT00530000063712.a.a.g	ENSGT00530000063712.a.a.h	ENSGT00940000159833	ENSGT00390000012355.B.a	ENSGT00940000157599	ENSGT00940000160227	ENSGT00940000156800	ENSGT00510000048144	ENSGT00940000156346	ENSGT00530000063675.a	ENSGT01040000240503.A.a.a	ENSGT00390000018400
Passeriformes	ANCESTRAL SPECIES	12	ENSGT01030000234623.a.b.b	ENSGT00390000008502	ENSGT00690000102225	ENSGT00940000157220	ENSGT00940000158881	ENSGT01030000234638.b.b.c.a	ENSGT00940000159320	ENSGT00940000164520	ENSGT00390000009453	ENSGT00940000156813	ENSGT00390000011608	ENSGT00940000161367	ENSGT00390000016718	ENSGT00940000158927	ENSGT00940000154870.D	ENSGT00390000012547.a ##22	ENSGT00940000161170	ENSGT00970000193421.C.b	ENSGT00940000154876.b	ENSGT00530000063712.a.a.g	ENSGT01050000244841.A.a.b	ENSGT00940000159833	ENSGT00390000012355.B.a	ENSGT00940000157599	ENSGT00940000160227	ENSGT00940000156800	ENSGT00510000048144	ENSGT00940000156346	ENSGT00530000063675.a	ENSGT01040000240503.A.a.a	ENSGT00390000018400
Great tit	MODERN SPECIES	1	SERINC4 (ENSPMJG00000012031)	HYPK (ENSPMJG00000012030)	MFAP1 (ENSPMJG00000012029)	FURIN (ENSPMJG00000012028)	FES (ENSPMJG00000012027)	MAN2A2 (ENSPMJG00000012026)	UNC45A (ENSPMJG00000012025)	ENSPMJG00000012024	PRC1 (ENSPMJG00000012022)	VPS33B (ENSPMJG00000012016)	HDDC3 (ENSPMJG00000012013)	TTLL13 (ENSPMJG00000012011)	CIB1 (ENSPMJG00000012000)	GDPGP1 (ENSPMJG00000011999)	SEMA4B (ENSPMJG00000011998)	IDH2 (ENSPMJG00000011671) ##22	ZNF710 (ENSPMJG00000011654)	AP3S2 (ENSPMJG00000011650)	ANPEP (ENSPMJG00000011645)	ENSPMJG00000011643	ENSPMJG00000011642	TMED3 (ENSPMJG00000011640)	ENSPMJG00000011639	ENSPMJG00000011636	RASGRF1 (ENSPMJG00000011635)	CTSH (ENSPMJG00000011634)	BLM (ENSPMJG00000011588)	WDR76 (ENSPMJG00000011587)	FRMD5 (ENSPMJG00000011586)	GOLM2 (ENSPMJG00000011585)	CTDSPL2 (ENSPMJG00000011584)
Passeriformes_d	ANCESTRAL SPECIES	12	ENSGT01030000234623.a.b.b	ENSGT00390000008502	ENSGT00690000102225	ENSGT00940000157220	ENSGT00940000158881	ENSGT01030000234638.b.b.c.a	ENSGT00940000159320	ENSGT00940000164520	ENSGT00390000009453	ENSGT00940000156813	ENSGT00390000011608	ENSGT00940000161367	ENSGT00390000016718	ENSGT00940000158927	ENSGT00940000154870.D	ENSGT00390000012547.a ##22	ENSGT00940000161170	ENSGT00970000193421.C.b	ENSGT00940000154876.b	ENSGT00530000063712.a.a.g	ENSGT01050000244841.A.a.b	ENSGT00940000159833	ENSGT00390000012355.B.a	ENSGT00940000157599	ENSGT00940000160227	ENSGT00940000156800	ENSGT00510000048144	ENSGT00940000156346	ENSGT00530000063675.a	ENSGT01040000240503.A.a.a	ENSGT00390000018400
Passeriformes_g	ANCESTRAL SPECIES	13	ENSGT00940000164082	ENSGT01030000234623.a.b.b	ENSGT00390000008502	ENSGT00690000102225	ENSGT00940000157220	ENSGT00940000158881	ENSGT01030000234638.b.b.c.a	ENSGT00940000159320	ENSGT00940000164520	ENSGT00390000009453	ENSGT00940000156813	ENSGT00940000161367	ENSGT00390000016718	ENSGT00940000158927	ENSGT00940000154870.D	ENSGT00390000012547.a ##22	ENSGT00940000161170	ENSGT00970000193421.C.b	ENSGT00940000154876.b	ENSGT00530000063712.a.a.g	ENSGT01050000244841.A.a.b	ENSGT00940000159833	ENSGT00940000157599	ENSGT00940000160227	ENSGT00940000156800	ENSGT00510000048144	ENSGT00940000156346	ENSGT00530000063675.a	ENSGT01040000240503.A.a.a	ENSGT00390000018400	ENSGT00390000016791
Passeroidea	ANCESTRAL SPECIES	12	ENSGT00940000164082	ENSGT01030000234623.a.b.b	ENSGT00390000008502	ENSGT00690000102225	ENSGT00940000157220	ENSGT00940000158881	ENSGT01030000234638.b.b.c.a	ENSGT00940000159320	ENSGT00940000164520	ENSGT00390000009453	ENSGT00940000156813	ENSGT00940000161367	ENSGT00390000016718	ENSGT00940000158927	ENSGT00940000154870.D	ENSGT00390000012547.a ##22	ENSGT00940000161170	ENSGT00970000193421.C.b	ENSGT00940000154876.b	ENSGT00530000063712.a.a.g	ENSGT01050000244841.A.a.b	ENSGT00940000159833	ENSGT00940000157599	ENSGT00940000160227	ENSGT00940000156800	ENSGT00510000048144	ENSGT00940000156346	ENSGT00530000063675.a	ENSGT01040000240503.A.a.a	ENSGT00390000018400	ENSGT00390000016791
Common canary	MODERN SPECIES	12	ENSSCAG00000014694	PDIA3 (ENSSCAG00000014470)	SERINC4 (ENSSCAG00000014400)	ENSSCAG00000014396	MFAP1 (ENSSCAG00000014392)	FURIN (ENSSCAG00000014387)	FES (ENSSCAG00000014381)	MAN2A2 (ENSSCAG00000014295)	UNC45A (ENSSCAG00000014259)	PRC1 (ENSSCAG00000014249)	ENSSCAG00000014241	VPS33B (ENSSCAG00000014226)	TTLL13 (ENSSCAG00000014214)	CIB1 (ENSSCAG00000014212)	SEMA4B (ENSSCAG00000014205)	IDH2 (ENSSCAG00000014199) ##22	ENSSCAG00000014195	AP3S2 (ENSSCAG00000014192)	ANPEP (ENSSCAG00000014187)	ENSSCAG00000014184	TMED3 (ENSSCAG00000014179)	RASGRF1 (ENSSCAG00000013440)	CTSH (ENSSCAG00000013083)	BLM (ENSSCAG00000012887)	WDR76 (ENSSCAG00000012854)	ENSSCAG00000012847	GOLM2 (ENSSCAG00000012840)	CTDSPL2 (ENSSCAG00000012831)	EIF3J (ENSSCAG00000012816)	SPG11 (ENSSCAG00000012635)	CIAO2A (ENSSCAG00000012588)
Zebra finch	MODERN SPECIES	1	SERF2 (ENSTGUG00000029530)	SERINC4 (ENSTGUG00000010186)	HYPK (ENSTGUG00000010184)	FURIN (ENSTGUG00000010132)	MFAP1 (ENSTGUG00000010162)	FES (ENSTGUG00000010113)	MAN2A2 (ENSTGUG00000010087)	UNC45A (ENSTGUG00000010052)	ENSTGUG00000025741	PRC1 (ENSTGUG00000021109)	VPS33B (ENSTGUG00000025670)	TTLL13 (ENSTGUG00000010033)	GDPGP1 (ENSTGUG00000023394)	CIB1 (ENSTGUG00000010028)	SEMA4B (ENSTGUG00000010009)	IDH2 (ENSTGUG00000022112) ##22	ZNF710 (ENSTGUG00000026802)	ENSTGUG00000026005	ENSTGUG00000029649	AP3S2 (ENSTGUG00000014282)	ANPEP (ENSTGUG00000014295)	ENSTGUG00000020442	ENSTGUG00000014270	ENSTGUG00000021476	ENSTGUG00000021398	ENSTGUG00000028054	ENSTGUG00000024286	RASGRF1 (ENSTGUG00000009981)	CTSH (ENSTGUG00000009976)	BLM (ENSTGUG00000009959)	WDR76 (ENSTGUG00000009939)
Medium ground finch	MODERN SPECIES	69	PPIP5K1 (ENSGFOG00000000824)	ENSGFOG00000000243	PDIA3 (ENSGFOG00000013230)	SERINC4 (ENSGFOG00000013228)	HYPK (ENSGFOG00000013226)	MFAP1 (ENSGFOG00000013223)	FURIN (ENSGFOG00000013221)	FES (ENSGFOG00000013212)	MAN2A2 (ENSGFOG00000013198)	UNC45A (ENSGFOG00000013142)	PRC1 (ENSGFOG00000013124)	VPS33B (ENSGFOG00000013122)	TTLL13 (ENSGFOG00000013119)	ENSGFOG00000013116	SEMA4B (ENSGFOG00000013115)	IDH2 (ENSGFOG00000013114) ##22	ENSGFOG00000013112	ENSGFOG00000013106	ANPEP (ENSGFOG00000013096)	TMED3 (ENSGFOG00000013090)	RASGRF1 (ENSGFOG00000012956)	CTSH (ENSGFOG00000012932)	BLM (ENSGFOG00000012602)	WDR76 (ENSGFOG00000012567)	FRMD5 (ENSGFOG00000012554)	GOLM2 (ENSGFOG00000012544)	CTDSPL2 (ENSGFOG00000012540)	EIF3J (ENSGFOG00000012537)	SPG11 (ENSGFOG00000012502)	CIAO2A (ENSGFOG00000012496)	ADAMTS7 (ENSGFOG00000012371)
Flycatcher	MODERN SPECIES	1	PDIA3 (ENSFALG00000011295)	ENSFALG00000011282	SERINC4 (ENSFALG00000011259)	HYPK (ENSFALG00000023556)	FURIN (ENSFALG00000011209)	ENSFALG00000011187	MAN2A2 (ENSFALG00000011174)	ENSFALG00000011242	UNC45A (ENSFALG00000011163)	ENSFALG00000011157	VPS33B (ENSFALG00000011098)	ENSFALG00000026266	TTLL13 (ENSFALG00000011077)	CIB1 (ENSFALG00000011064)	SEMA4B (ENSFALG00000011052)	IDH2 (ENSFALG00000011043) ##22	ZNF710 (ENSFALG00000011037)	AP3S2 (ENSFALG00000011031)	ANPEP (ENSFALG00000011026)	ENSFALG00000011022	ENSFALG00000011013	ENSFALG00000023639	ENSFALG00000011006	ENSFALG00000011000	ENSFALG00000010981	WDR76 (ENSFALG00000010962)	ENSFALG00000023463	ENSFALG00000025909	ENSFALG00000024257	GOLM2 (ENSFALG00000004951)	CTDSPL2 (ENSFALG00000004970)
Neognathae_c	ANCESTRAL SPECIES	15	ENSGT01030000234623.a.b.b	ENSGT00390000008502	ENSGT00690000102225	ENSGT00940000157220	ENSGT00940000158881	ENSGT01030000234638.b.b.c.a	ENSGT00940000159320	ENSGT00940000164520	ENSGT00390000009453	ENSGT00940000156813	ENSGT00390000011608	ENSGT00940000161367	ENSGT00390000016718	ENSGT00940000158927	ENSGT00940000154870.D	ENSGT00390000012547.a ##22	ENSGT00940000161170	ENSGT00970000193421.C.b	ENSGT00940000154876.b	ENSGT00530000063712.a.a.g	ENSGT00940000159833	ENSGT00390000012355.B.a	ENSGT00940000157599	ENSGT00940000160227	ENSGT00940000156800	ENSGT00510000048144	ENSGT00940000156346	ENSGT00530000063675.a	ENSGT01040000240503.A.a.a	ENSGT00390000018400	ENSGT00390000016791
Kakapo	MODERN SPECIES	1	SERINC4 (ENSSHBG00005007317)	HYPK (ENSSHBG00005007369)	MFAP1 (ENSSHBG00005007378)	FURIN (ENSSHBG00005007398)	FES (ENSSHBG00005007427)	MAN2A2 (ENSSHBG00005007460)	UNC45A (ENSSHBG00005007486)	ENSSHBG00005007513	PRC1 (ENSSHBG00005007544)	VPS33B (ENSSHBG00005007592)	HDDC3 (ENSSHBG00005007632)	ENSSHBG00005007645	ENSSHBG00005007653	CIB1 (ENSSHBG00005007734)	SEMA4B (ENSSHBG00005007761)	IDH2 (ENSSHBG00005007782) ##22	ZNF710 (ENSSHBG00005007803)	AP3S2 (ENSSHBG00005007818)	ANPEP (ENSSHBG00005007852)	ENSSHBG00005007919	ENSSHBG00005007929	ENSSHBG00005007935	TMED3 (ENSSHBG00005007939)	ENSSHBG00005007948	RASGRF1 (ENSSHBG00005007956)	CTSH (ENSSHBG00005007973)	BLM (ENSSHBG00005008005)	WDR76 (ENSSHBG00005008067)	FRMD5 (ENSSHBG00005008084)	GOLM2 (ENSSHBG00005008102)	CTDSPL2 (ENSSHBG00005008122)
Golden eagle	MODERN SPECIES	21	SERINC4 (ENSACCG00020003125)	HYPK (ENSACCG00020003072)	MFAP1 (ENSACCG00020003062)	FURIN (ENSACCG00020003041)	FES (ENSACCG00020003018)	MAN2A2 (ENSACCG00020002977)	UNC45A (ENSACCG00020002907)	ENSACCG00020002873	PRC1 (ENSACCG00020002843)	VPS33B (ENSACCG00020002805)	HDDC3 (ENSACCG00020002786)	ENSACCG00020002759	GDPGP1 (ENSACCG00020002735)	ENSACCG00020002723	SEMA4B (ENSACCG00020002698)	IDH2 (ENSACCG00020002683) ##22	ZNF710 (ENSACCG00020002669)	AP3S2 (ENSACCG00020002658)	ANPEP (ENSACCG00020002638)	ENSACCG00020002617	ENSACCG00020002606	ENSACCG00020002579	TMED3 (ENSACCG00020002558)	ENSACCG00020002547	RASGRF1 (ENSACCG00020002515)	CTSH (ENSACCG00020002474)	BLM (ENSACCG00020002368)	WDR76 (ENSACCG00020002221)	FRMD5 (ENSACCG00020002198)	GOLM2 (ENSACCG00020002151)	CTDSPL2 (ENSACCG00020002110)
African ostrich	MODERN SPECIES	1020																IDH2 (ENSSCUG00000013168) ##22	ZNF710 (ENSSCUG00000013158)	AP3S2 (ENSSCUG00000013156)	ENSSCUG00000013155	TMED3 (ENSSCUG00000013152)	ENSSCUG00000013151	RASGRF1 (ENSSCUG00000013144)	ENSSCUG00000013142	ENSSCUG00000013139	BLM (ENSSCUG00000013117)	WDR76 (ENSSCUG00000013091)	FRMD5 (ENSSCUG00000013079)	GOLM2 (ENSSCUG00000013072)	CTDSPL2 (ENSSCUG00000013071)	EIF3J (ENSSCUG00000013070)	SPG11 (ENSSCUG00000013068)
Cryptodira	ANCESTRAL SPECIES	13										ENSGT00390000011608	ENSGT00390000014472	ENSGT00940000161367	ENSGT00390000016718	ENSGT00940000158927	ENSGT00940000154870.D	ENSGT00390000012547.a ##22	ENSGT00940000161170	ENSGT00530000064251	ENSGT00940000154876.b	ENSGT00940000159833	ENSGT00390000012355.B.a	ENSGT00940000157599	ENSGT00940000160227	ENSGT00940000156800	ENSGT00510000048144	ENSGT00940000156346	ENSGT00530000063675.a	ENSGT01040000240503.A.a.a	ENSGT00390000018400	ENSGT00390000016791	ENSGT00390000017697.a
Testudinoidea	ANCESTRAL SPECIES	6	ENSGT00690000102225	ENSGT00940000157220	ENSGT00940000158881.a	ENSGT01030000234638.b.b.c.a.o.b	ENSGT01030000234638.b.b.c.a.o.a	ENSGT00940000159320	ENSGT00940000164520	ENSGT00390000009453	ENSGT00940000156813.t	ENSGT00390000011608	ENSGT00390000014472	ENSGT00940000161367	ENSGT00390000016718	ENSGT00940000158927	ENSGT00940000154870.D	ENSGT00390000012547.a ##22	ENSGT00940000161170	ENSGT00530000064251	ENSGT00940000154876.b	ENSGT00530000063712.a.a	ENSGT00940000159833	ENSGT00390000012355.B.a	ENSGT00940000157599	ENSGT00940000160227	ENSGT00940000156800	ENSGT00510000048144	ENSGT00940000156346	ENSGT00530000063675.a	ENSGT01040000240503.A.a.a	ENSGT00390000018400	ENSGT00390000016791
Emydidae	ANCESTRAL SPECIES	21	ENSGT00390000008502	ENSGT00690000102225	ENSGT00940000157220	ENSGT00940000158881.a	ENSGT01030000234638.b.b.c.a.o.b	ENSGT01030000234638.b.b.c.a.p	ENSGT00940000159320	ENSGT00940000164520	ENSGT00390000009453	ENSGT00940000156813.t	ENSGT00390000011608	ENSGT00940000161367	ENSGT00390000016718	ENSGT00940000158927	ENSGT00940000154870.D	ENSGT00390000012547.a ##22	ENSGT00940000161170	ENSGT00530000064251	ENSGT00940000154876.b	ENSGT00530000063712.a.a	ENSGT00940000159833	ENSGT00390000012355.B.a	ENSGT00940000157599	ENSGT00940000160227	ENSGT00940000156800	ENSGT00510000048144	ENSGT00940000156346	ENSGT00530000063675.a	ENSGT01040000240503.A.a.a	ENSGT00390000018400	ENSGT00390000016791
Three-toed box turtle	MODERN SPECIES	27	PDIA3 (ENSTMTG00000001846)	ENSTMTG00000001841	ENSTMTG00000001836	SERINC4 (ENSTMTG00000001823)	HYPK (ENSTMTG00000001815)	MFAP1 (ENSTMTG00000001809)	FURIN (ENSTMTG00000001794)	MAN2A2 (ENSTMTG00000001757)	UNC45A (ENSTMTG00000001455)	ENSTMTG00000001393	PRC1 (ENSTMTG00000001377)	VPS33B (ENSTMTG00000001325)	TTLL13 (ENSTMTG00000001291)	CIB1 (ENSTMTG00000001269)	SEMA4B (ENSTMTG00000001259)	IDH2 (ENSTMTG00000000465) ##22	ZNF710 (ENSTMTG00000000073)	ARPIN (ENSTMTG00000000048)	ANPEP (ENSTMTG00000010813)	TMED3 (ENSTMTG00000010644)	ENSTMTG00000010629	ENSTMTG00000010584	ENSTMTG00000010510	CTSH (ENSTMTG00000010493)	BLM (ENSTMTG00000010382)	WDR76 (ENSTMTG00000010297)	FRMD5 (ENSTMTG00000010115)	GOLM2 (ENSTMTG00000010056)	CTDSPL2 (ENSTMTG00000010013)	ENSTMTG00000010003	EIF3J (ENSTMTG00000009982)
painted turtle	MODERN SPECIES	742	HYPK (ENSCPBG00000024446)	MFAP1 (ENSCPBG00000024449)	FURIN (ENSCPBG00000024451)	FES (ENSCPBG00000024453)	ENSCPBG00000024459	ENSCPBG00000024463	UNC45A (ENSCPBG00000024468)	ENSCPBG00000024470	PRC1 (ENSCPBG00000024471)	VPS33B (ENSCPBG00000024473)	HDDC3 (ENSCPBG00000024474)	TTLL13 (ENSCPBG00000024475)	GDPGP1 (ENSCPBG00000024476)	CIB1 (ENSCPBG00000024477)	SEMA4B (ENSCPBG00000024478)	IDH2 (ENSCPBG00000024479) ##22	ZNF710 (ENSCPBG00000024916)	ARPIN (ENSCPBG00000024924)	ANPEP (ENSCPBG00000024929)	ENSCPBG00000024935	ENSCPBG00000024942	TMED3 (ENSCPBG00000024949)	ENSCPBG00000024952	RASGRF1 (ENSCPBG00000024963)	CTSH (ENSCPBG00000024970)	BLM (ENSCPBG00000025000)	WDR76 (ENSCPBG00000025118)	FRMD5 (ENSCPBG00000025120)	GOLM2 (ENSCPBG00000025126)	CTDSPL2 (ENSCPBG00000025131)	EIF3J (ENSCPBG00000025162)
Testudinidae	ANCESTRAL SPECIES	3	ENSGT00690000102225	ENSGT00940000157220	ENSGT00940000158881.a	ENSGT01030000234638.b.b.c.a.o.b	ENSGT01030000234638.b.b.c.a.o.a	ENSGT00940000159320	ENSGT00940000164520	ENSGT00390000009453	ENSGT00940000156813.t	ENSGT00390000011608	ENSGT00390000014472	ENSGT00940000161367	ENSGT00390000016718	ENSGT00940000158927	ENSGT00940000154870.D	ENSGT00390000012547.a ##22	ENSGT00940000161170	ENSGT00530000064251	ENSGT00940000154876.b	ENSGT00530000063712.a.a.e	ENSGT00940000159833	ENSGT00390000012355.B.a	ENSGT00940000157599	ENSGT00940000160227	ENSGT00940000156800	ENSGT00510000048144	ENSGT00940000156346	ENSGT00530000063675.a	ENSGT01040000240503.A.a.a	ENSGT00390000018400	ENSGT00390000016791
Goode s thornscrub tortoise	MODERN SPECIES	1	ENSGEVG00005008142	ENSGEVG00005008164	SERF2 (ENSGEVG00005008200)	SERINC4 (ENSGEVG00005008230)	HYPK (ENSGEVG00005008270)	MFAP1 (ENSGEVG00005008283)	FURIN (ENSGEVG00005008313)	FES (ENSGEVG00005008384)	MAN2A2 (ENSGEVG00005008562)	UNC45A (ENSGEVG00005008660)	ENSGEVG00005008729	PRC1 (ENSGEVG00005008866)	GDPGP1 (ENSGEVG00005008952)	CIB1 (ENSGEVG00005008971)	SEMA4B (ENSGEVG00005009000)	IDH2 (ENSGEVG00005009069) ##22	ZNF710 (ENSGEVG00005009201)	ARPIN (ENSGEVG00005009224)	ANPEP (ENSGEVG00005009325)	ENSGEVG00005009382	ENSGEVG00005009462	TMED3 (ENSGEVG00005009691)	ENSGEVG00005009735	ENSGEVG00005009769	ENSGEVG00005009916	CTSH (ENSGEVG00005009965)	BLM (ENSGEVG00005010102)	WDR76 (ENSGEVG00005010927)	FRMD5 (ENSGEVG00005010982)	GOLM2 (ENSGEVG00005011188)	CTDSPL2 (ENSGEVG00005011247)
Abingdon island giant tortoise	MODERN SPECIES	1798	ENSCABG00000008950	ENSCABG00000008955	ENSCABG00000008965	ENSCABG00000008973	UNC45A (ENSCABG00000009005)	ENSCABG00000010119	PRC1 (ENSCABG00000010123)	VPS33B (ENSCABG00000010124)	HDDC3 (ENSCABG00000010127)	NGRN (ENSCABG00000010129)	TTLL13 (ENSCABG00000010130)	GDPGP1 (ENSCABG00000010133)	CIB1 (ENSCABG00000010147)	SEMA4B (ENSCABG00000010148)	ENSCABG00000010149	IDH2 (ENSCABG00000010150) ##22	ZNF710 (ENSCABG00000010153)	ARPIN (ENSCABG00000010154)	ANPEP (ENSCABG00000010155)	ENSCABG00000010159	ENSCABG00000010160	ENSCABG00000010161	TMED3 (ENSCABG00000010171)	ENSCABG00000010175	ENSCABG00000010178	RASGRF1 (ENSCABG00000010185)	CTSH (ENSCABG00000010198)	GIMD1 (ENSCABG00000010363)	AIMP1 (ENSCABG00000010364)	TBCK (ENSCABG00000010394)	NPNT (ENSCABG00000011588)
Mammalia	ANCESTRAL SPECIES	45	ENSGT00940000160227	ENSGT00940000156800	ENSGT00940000157220	ENSGT00940000158881	ENSGT01030000234638.b.b.c.a	ENSGT00940000159320	ENSGT00390000009453	ENSGT00940000165395	ENSGT00940000156813	ENSGT00390000011608	ENSGT00390000014472	ENSGT00940000161367	ENSGT00390000016718	ENSGT00940000158927	ENSGT00940000154870.D	ENSGT00390000012547.a ##22	ENSGT00940000161170	ENSGT00530000064251	ENSGT00970000193421.C.b	ENSGT00940000154876.b	ENSGT00530000063712.a.a	ENSGT00390000009995	ENSGT00390000014273.a	ENSGT00950000182920.a	ENSGT00940000164158.B	ENSGT00940000159749	ENSGT00390000005222	ENSGT00950000182844.b.b.b	ENSGT00390000000453	ENSGT00390000005855	ENSGT00940000160026
Platypus	MODERN SPECIES	84	RASGRF1 (ENSOANG00000042096)	CTSH (ENSOANG00000040239)	BLM (ENSOANG00000009316)	FURIN (ENSOANG00000047447)	FES (ENSOANG00000046391)	MAN2A2 (ENSOANG00000008973)	UNC45A (ENSOANG00000022352)	PRC1 (ENSOANG00000038100)	TTLL13 (ENSOANG00000006840)	ENSOANG00000039607	HDDC3 (ENSOANG00000043013)	VPS33B (ENSOANG00000040875)	GDPGP1 (ENSOANG00000036614)	CIB1 (ENSOANG00000050542)	SEMA4B (ENSOANG00000013510)	IDH2 (ENSOANG00000015236) ##22	ZNF710 (ENSOANG00000046750)	ARPIN (ENSOANG00000036108)	AP3S2 (ENSOANG00000041499)	ANPEP (ENSOANG00000000369)	ENSOANG00000037378	RHO (ENSOANG00000003778)	PLXND1 (ENSOANG00000050054)	IFT122 (ENSOANG00000010892)	MBD4 (ENSOANG00000004589)	ENSOANG00000028240	RPL32 (ENSOANG00000037596)	ENSOANG00000040437	ENSOANG00000003781	SEC13 (ENSOANG00000009346)	ENSOANG00000048399
Theria	ANCESTRAL SPECIES	22	ENSGT00940000160227	ENSGT00940000156800	ENSGT00940000157220	ENSGT00940000158881	ENSGT01030000234638.b.b.c.a	ENSGT00940000159320	ENSGT00940000162149	ENSGT00390000009453	ENSGT00940000156813	ENSGT00390000011608	ENSGT00390000014472	ENSGT00940000161367	ENSGT00390000016718	ENSGT00940000158927	ENSGT00940000154870.D	ENSGT00390000012547.a ##22	ENSGT00940000161170	ENSGT00530000064251	ENSGT00970000193421.C.b	ENSGT00940000154876.b	ENSGT00530000063712.a.a	ENSGT00390000009995	ENSGT00390000014273.a	ENSGT00950000182920.a	ENSGT00940000164158.B	ENSGT00940000177011	ENSGT00940000159749	ENSGT00390000005222	ENSGT00950000182844.b.b.b	ENSGT00390000000453	ENSGT00390000005855
Eutheria	ANCESTRAL SPECIES	8	ENSGT00390000010652.C	ENSGT00940000156800	ENSGT00940000157220	ENSGT00940000158881	ENSGT01030000234638.b.b.c.a	ENSGT00390000011608	ENSGT00940000159320	ENSGT00940000162149	ENSGT00390000009453	ENSGT00940000156813	ENSGT00390000014472	ENSGT00940000161367	ENSGT00390000016718	ENSGT00940000158927	ENSGT00940000154870.D	ENSGT00390000012547.a ##22	ENSGT00940000161170	ENSGT00530000064251	ENSGT00970000193421.C.b	ENSGT00940000154876.b	ENSGT00530000063712.a.a.k	ENSGT00530000063712.a.a.l	ENSGT00390000009995	ENSGT00390000014273.a	ENSGT00950000182920.a	ENSGT00940000159749	ENSGT00390000005222	ENSGT00950000182844.b.b.b	ENSGT00390000000453	ENSGT00390000005855	ENSGT00940000160026
Boreoeutheria	ANCESTRAL SPECIES	3	ENSGT00390000010652.C	ENSGT00940000156800	ENSGT00940000157220	ENSGT00940000158881	ENSGT01030000234638.b.b.c.a	ENSGT00390000011608	ENSGT00940000159320	ENSGT00940000162149	ENSGT00390000009453	ENSGT00940000156813	ENSGT00390000014472	ENSGT00940000161367	ENSGT00390000016718	ENSGT00940000158927	ENSGT00940000154870.D	ENSGT00390000012547.a ##22	ENSGT00940000161170	ENSGT00530000064251	ENSGT00970000193421.C.b	ENSGT00940000154876.b	ENSGT00530000063712.a.a.k	ENSGT00530000063712.a.a.l	ENSGT00390000009995	ENSGT00390000014273.a	ENSGT00950000182920.a	ENSGT00940000159749	ENSGT00520000059044	ENSGT00390000005222	ENSGT00950000182844.b.b.b	ENSGT00390000000453	ENSGT00390000005855
Euarchontoglires	ANCESTRAL SPECIES	3	ENSGT00390000010652.C	ENSGT00940000156800	ENSGT00940000157220	ENSGT00940000158881	ENSGT01030000234638.b.b.c.a	ENSGT00390000011608	ENSGT00940000159320	ENSGT00940000162149	ENSGT00390000009453	ENSGT00940000156813	ENSGT00390000014472	ENSGT00940000161367	ENSGT00390000016718	ENSGT00940000158927	ENSGT00940000154870.D	ENSGT00390000012547.a ##22	ENSGT00940000161170	ENSGT00530000064251	ENSGT00970000193421.C.b	ENSGT00940000154876.b	ENSGT00530000063712.a.a.k	ENSGT00530000063712.a.a.l	ENSGT00390000009995	ENSGT00390000014273.a	ENSGT00950000182920.a	ENSGT00940000159749	ENSGT00520000059044	ENSGT00390000005222	ENSGT00950000182844.b.b.b	ENSGT00390000000453	ENSGT00390000005855
Primates	ANCESTRAL SPECIES	2	ENSGT00390000010652.C	ENSGT00940000156800	ENSGT00940000157220	ENSGT00940000158881	ENSGT01030000234638.b.b.c.a	ENSGT00390000011608	ENSGT00940000159320	ENSGT00940000162149	ENSGT00390000009453	ENSGT00940000156813	ENSGT00390000014472	ENSGT00940000161367	ENSGT00390000016718	ENSGT00940000158927	ENSGT00940000154870.D	ENSGT00390000012547.a ##22	ENSGT00940000161170	ENSGT00530000064251	ENSGT00970000193421.C.b	ENSGT00940000154876.b	ENSGT00530000063712.a.a.k	ENSGT00530000063712.a.a.l	ENSGT00390000009995	ENSGT00390000014273.a	ENSGT00950000182920.a	ENSGT00940000159749	ENSGT00520000059044	ENSGT00390000005222	ENSGT00950000182844.b.b.b	ENSGT00390000000453	ENSGT00390000005855
Haplorrhini	ANCESTRAL SPECIES	36	ENSGT00390000010652.C	ENSGT00940000156800	ENSGT00940000157220	ENSGT00940000158881	ENSGT01030000234638.b.b.c.a	ENSGT00390000011608	ENSGT00940000159320	ENSGT00940000162149	ENSGT00390000009453	ENSGT00940000156813	ENSGT00390000014472	ENSGT00940000161367	ENSGT00390000016718	ENSGT00940000158927	ENSGT00940000154870.D	ENSGT00390000012547.a ##22	ENSGT00940000161170	ENSGT00530000064251	ENSGT00970000193421.C.b	ENSGT00940000154876.b	ENSGT00530000063712.a.a.k	ENSGT00530000063712.a.a.l	ENSGT00390000009995	ENSGT00390000014273.a	ENSGT00950000182920.a	ENSGT00940000159749	ENSGT00520000059044	ENSGT00390000005222	ENSGT00950000182844.b.b.b	ENSGT00390000000453	ENSGT00390000005855
Simiiformes	ANCESTRAL SPECIES	28	ENSGT00390000010652.C	ENSGT00940000156800	ENSGT00940000157220	ENSGT00940000158881	ENSGT01030000234638.b.b.c.a	ENSGT00390000011608	ENSGT00940000159320	ENSGT00940000162149	ENSGT00390000009453	ENSGT00940000156813	ENSGT00390000014472	ENSGT00940000161367	ENSGT00390000016718	ENSGT00940000158927	ENSGT00940000154870.D	ENSGT00390000012547.a ##22	ENSGT00940000161170	ENSGT00530000064251	ENSGT00970000193421.C.b	ENSGT00940000154876.b	ENSGT00530000063712.a.a.k	ENSGT00530000063712.a.a.l	ENSGT00390000009995	ENSGT00390000014273.a	ENSGT00950000182920.a	ENSGT00940000159749	ENSGT00520000059044	ENSGT00390000005222	ENSGT00950000182844.b.b.b	ENSGT00390000000453	ENSGT00390000005855
Catarrhini	ANCESTRAL SPECIES	9	ENSGT00940000156800	ENSGT00940000157220	ENSGT00940000158881	ENSGT01030000234638.b.b.c.a	ENSGT00390000011608	ENSGT00940000159320	ENSGT00940000162149	ENSGT00390000009453	ENSGT00940000156813	ENSGT00390000014472	ENSGT00940000161367	ENSGT00390000016718	ENSGT00940000158927	ENSGT00390000018318.u.b.a.b.a.a.b	ENSGT00940000154870.D	ENSGT00390000012547.a ##22	ENSGT00940000161170	ENSGT00530000064251	ENSGT00970000193421.C.b	ENSGT00940000154876.b	ENSGT00530000063712.a.a.k	ENSGT00530000063712.a.a.l	ENSGT00390000009995	ENSGT00390000014273.a	ENSGT00950000182920.a	ENSGT00940000159749	ENSGT00520000059044	ENSGT00390000005222	ENSGT00950000182844.b.b.b	ENSGT00390000000453	ENSGT00390000005855
Hominoidea	ANCESTRAL SPECIES	28	ENSGT00940000158881	ENSGT00940000157220	ENSGT00940000156800	ENSGT00390000010652.C	ENSGT00950000183076.a.b.b.a.a	ENSGT00940000163116	ENSGT00940000156876.k.b	ENSGT00390000011515.c.b.a	ENSGT00530000063484.a.d	ENSGT00390000014472	ENSGT00940000161367	ENSGT00390000016718	ENSGT00940000158927	ENSGT00910000148745	ENSGT00940000154870.D	ENSGT00390000012547.a ##22	ENSGT00940000161170	ENSGT00530000064251	ENSGT00970000193421.C.b	ENSGT00940000154876.b	ENSGT00530000063712.a.a.k	ENSGT00530000063712.a.a.l	ENSGT00390000009995	ENSGT00390000014273.a	ENSGT00950000182920.a	ENSGT00520000059044	ENSGT00940000159749	ENSGT00390000005222	ENSGT00950000182844.b.b.b	ENSGT00390000000453	ENSGT00390000005855
Hominidae	ANCESTRAL SPECIES	27	ENSGT00940000158881	ENSGT00940000157220	ENSGT00940000156800	ENSGT00390000010652.C	ENSGT00950000183076.a.b.b.a.a	ENSGT00940000163116	ENSGT00940000156876.k.b	ENSGT00390000011515.c.b.a	ENSGT00530000063484.a.d	ENSGT00390000014472	ENSGT00940000161367	ENSGT00390000016718	ENSGT00940000158927	ENSGT00910000148745	ENSGT00940000154870.D	ENSGT00390000012547.a ##22	ENSGT00940000161170	ENSGT00530000064251	ENSGT00970000193421.C.b	ENSGT00940000154876.b	ENSGT00530000063712.a.a.k	ENSGT00530000063712.a.a.l	ENSGT00390000009995	ENSGT00390000014273.a	ENSGT00950000182920.a	ENSGT00940000159749	ENSGT00390000005222	ENSGT00950000182844.b.b.b	ENSGT00390000000453	ENSGT00390000005855	ENSGT00940000160026
Homo/Pan/Gorilla group	ANCESTRAL SPECIES	30	ENSGT00940000157220	ENSGT00940000156800	ENSGT00390000010652.C	ENSGT00950000183076.a.b.b.a.a	ENSGT00940000163116	ENSGT00940000156876.k.b	ENSGT00530000062932.c.a.a.a.a.a.b.b	ENSGT00390000011515.c.b.a	ENSGT00530000063484.a.d	ENSGT00390000014472	ENSGT00940000161367	ENSGT00390000016718	ENSGT00940000158927	ENSGT00910000148745	ENSGT00940000154870.D	ENSGT00390000012547.a ##22	ENSGT00940000161170	ENSGT00530000064251	ENSGT00970000193421.C.b	ENSGT00940000154876.b	ENSGT00530000063712.a.a.k	ENSGT00530000063712.a.a.l	ENSGT00390000009995	ENSGT00390000014273.a	ENSGT00950000182920.a	ENSGT00940000159749	ENSGT00390000005222	ENSGT00950000182844.b.b.b	ENSGT00390000000453	ENSGT00390000005855	ENSGT00940000160026
Gorilla	MODERN SPECIES	6	FES (ENSGGOG00000008174)	FURIN (ENSGGOG00000008162)	BLM (ENSGGOG00000007710)	CRTC3 (ENSGGOG00000003442)	IQGAP1 (ENSGGOG00000013280)	ZNF774 (ENSGGOG00000026972)	ENSGGOG00000007570	ENSGGOG00000039032	ENSGGOG00000043453	NGRN (ENSGGOG00000028118)	TTLL13 (ENSGGOG00000001630)	GDPGP1 (ENSGGOG00000004806)	CIB1 (ENSGGOG00000004802)	ENSGGOG00000036977	SEMA4B (ENSGGOG00000004795)	IDH2 (ENSGGOG00000004880) ##22	ZNF710 (ENSGGOG00000004875)	ENSGGOG00000007765	ANPEP (ENSGGOG00000005686)	MESP2 (ENSGGOG00000005683)	MESP1 (ENSGGOG00000014946)	WDR93 (ENSGGOG00000010616)	PEX11A (ENSGGOG00000016919)	PLIN1 (ENSGGOG00000017088)	KIF7 (ENSGGOG00000008509)	TICRR (ENSGGOG00000008492)	RHCG (ENSGGOG00000015465)	POLG (ENSGGOG00000011727)	FANCI (ENSGGOG00000011696)	RLBP1 (ENSGGOG00000011688)	ENSGGOG00000025704
Homo/Pan group	ANCESTRAL SPECIES	29	ENSGT00940000157220	ENSGT00940000156800	ENSGT00390000010652.C	ENSGT00950000183076.a.b.b.a.a	ENSGT00940000163116	ENSGT00940000156876.k.b	ENSGT00530000062932.c.a.a.a.a.a.b.b	ENSGT00390000011515.c.b.a	ENSGT00530000063484.a.d	ENSGT00390000014472	ENSGT00940000161367	ENSGT00390000016718	ENSGT00940000158927	ENSGT00390000018318.u.b.a.b.a.a.b	ENSGT00940000154870.D	ENSGT00390000012547.a ##22	ENSGT00940000161170	ENSGT00530000064251	ENSGT00970000193421.C.b	ENSGT00940000154876.b	ENSGT00530000063712.a.a.k	ENSGT00530000063712.a.a.l	ENSGT00390000009995	ENSGT00390000014273.a	ENSGT00950000182920.a	ENSGT00940000159749	ENSGT00390000005222	ENSGT00950000182844.b.b.b	ENSGT00390000000453	ENSGT00390000005855	ENSGT00940000160026
Human	MODERN SPECIES	6	UNC45A (ENSG00000140553)	HDDC3 (ENSG00000184508)	MAN2A2 (ENSG00000196547)	FES (ENSG00000182511)	FURIN (ENSG00000140564)	BLM (ENSG00000197299)	CRTC3 (ENSG00000140577)	IQGAP1 (ENSG00000140575)	ZNF774 (ENSG00000196391)	ENSG00000275674	NGRN (ENSG00000182768)	TTLL13 (ENSG00000213471)	GDPGP1 (ENSG00000183208)	CIB1 (ENSG00000185043)	SEMA4B (ENSG00000185033)	IDH2 (ENSG00000182054) ##22	ZNF710 (ENSG00000140548)	ARPIN (ENSG00000242498)	ARPIN-AP3S2 (ENSG00000250021)	AP3S2 (ENSG00000157823)	ANPEP (ENSG00000166825)	MESP2 (ENSG00000188095)	MESP1 (ENSG00000166823)	WDR93 (ENSG00000140527)	PEX11A (ENSG00000166821)	PLIN1 (ENSG00000166819)	KIF7 (ENSG00000166813)	TICRR (ENSG00000140534)	RHCG (ENSG00000140519)	POLGARF (ENSG00000291307)	POLG (ENSG00000140521)
Pan	ANCESTRAL SPECIES	34	ENSGT00940000158881	ENSGT00940000157220	ENSGT00940000156800	ENSGT00390000010652.C	ENSGT00950000183076.a.b.b.a.a	ENSGT00940000163116	ENSGT00940000156876.k.b	ENSGT00530000062932.c.a.a.a.a.a.b.b	ENSGT00390000011515.c.b.a	ENSGT00530000063484.a.d	ENSGT00390000014472	ENSGT00940000161367	ENSGT00390000016718	ENSGT00940000158927	ENSGT00940000154870.D	ENSGT00390000012547.a ##22	ENSGT00940000161170	ENSGT00530000064251	ENSGT00940000154876.b	ENSGT00530000063712.a.a.k	ENSGT00530000063712.a.a.l	ENSGT00390000009995	ENSGT00390000014273.a	ENSGT00950000182920.a	ENSGT00940000159749	ENSGT00390000005222	ENSGT00950000182844.b.b.b	ENSGT00390000000453	ENSGT00390000005855	ENSGT00940000160026	ENSGT00910000147807
Chimpanzee	MODERN SPECIES	6	MAN2A2 (ENSPTRG00000007463)	FES (ENSPTRG00000007462)	FURIN (ENSPTRG00000007461)	BLM (ENSPTRG00000007460)	CRTC3 (ENSPTRG00000007457)	IQGAP1 (ENSPTRG00000007455)	ZNF774 (ENSPTRG00000023856)	ENSPTRG00000040709	ENSPTRG00000043623	ENSPTRG00000018646	NGRN (ENSPTRG00000034472)	TTLL13 (ENSPTRG00000007451)	GDPGP1 (ENSPTRG00000023568)	CIB1 (ENSPTRG00000007449)	SEMA4B (ENSPTRG00000007448)	IDH2 (ENSPTRG00000007446) ##22	ZNF710 (ENSPTRG00000007445)	ARPIN (ENSPTRG00000007442)	ENSPTRG00000007441	MESP2 (ENSPTRG00000007440)	MESP1 (ENSPTRG00000007439)	WDR93 (ENSPTRG00000007438)	PEX11A (ENSPTRG00000007437)	PLIN1 (ENSPTRG00000007436)	KIF7 (ENSPTRG00000007434)	TICRR (ENSPTRG00000007433)	RHCG (ENSPTRG00000007432)	POLG (ENSPTRG00000007431)	FANCI (ENSPTRG00000007430)	RLBP1 (ENSPTRG00000007429)	ENSPTRG00000044486
Bonobo	MODERN SPECIES	6	FURIN (ENSPPAG00000034430)	BLM (ENSPPAG00000032173)	CRTC3 (ENSPPAG00000035032)	IQGAP1 (ENSPPAG00000039618)	ZNF774 (ENSPPAG00000028939)	ENSPPAG00000005940	ENSPPAG00000030356	ENSPPAG00000033086	ENSPPAG00000040877	NGRN (ENSPPAG00000037382)	TTLL13 (ENSPPAG00000025237)	GDPGP1 (ENSPPAG00000003278)	ENSPPAG00000043374	ENSPPAG00000043011	SEMA4B (ENSPPAG00000038630)	IDH2 (ENSPPAG00000032500) ##22	ZNF710 (ENSPPAG00000043381)	ENSPPAG00000040525	ANPEP (ENSPPAG00000009804)	ENSPPAG00000037533	MESP1 (ENSPPAG00000030355)	WDR93 (ENSPPAG00000042043)	PEX11A (ENSPPAG00000037244)	PLIN1 (ENSPPAG00000030961)	KIF7 (ENSPPAG00000039761)	TICRR (ENSPPAG00000040895)	RHCG (ENSPPAG00000040713)	POLG (ENSPPAG00000043082)	FANCI (ENSPPAG00000023949)	RLBP1 (ENSPPAG00000029103)	ENSPPAG00000007167
Orangutan	MODERN SPECIES	6	PRC1 (ENSPPYG00000006791)	RCCD1 (ENSPPYG00000006790)	UNC45A (ENSPPYG00000006789)	HDDC3 (ENSPPYG00000006788)	MAN2A2 (ENSPPYG00000006787)	FES (ENSPPYG00000006786)	FURIN (ENSPPYG00000006785)	BLM (ENSPPYG00000006784)	CRTC3 (ENSPPYG00000006783)	IQGAP1 (ENSPPYG00000006782)	ENSPPYG00000006781	NGRN (ENSPPYG00000006779)	GDPGP1 (ENSPPYG00000033922)	CIB1 (ENSPPYG00000006777)	SEMA4B (ENSPPYG00000006776)	IDH2 (ENSPPYG00000006775) ##22	ZNF710 (ENSPPYG00000034046)	ARPIN (ENSPPYG00000006774)	AP3S2 (ENSPPYG00000006773)	ENSPPYG00000037279	ANPEP (ENSPPYG00000006772)	MESP2 (ENSPPYG00000006771)	MESP1 (ENSPPYG00000006864)	WDR93 (ENSPPYG00000006770)	PEX11A (ENSPPYG00000006769)	PLIN1 (ENSPPYG00000006768)	KIF7 (ENSPPYG00000006767)	TICRR (ENSPPYG00000006766)	RHCG (ENSPPYG00000006765)	POLG (ENSPPYG00000006763)	FANCI (ENSPPYG00000006762)
Gibbon	MODERN SPECIES	21	MAN2A2 (ENSNLEG00000012209)	FES (ENSNLEG00000012157)	FURIN (ENSNLEG00000012144)	BLM (ENSNLEG00000012087)	CRTC3 (ENSNLEG00000033347)	IQGAP1 (ENSNLEG00000012014)	ZNF774 (ENSNLEG00000012010)	ENSNLEG00000028987	ENSNLEG00000030916	NGRN (ENSNLEG00000012007)	TTLL13 (ENSNLEG00000011994)	GDPGP1 (ENSNLEG00000018884)	CIB1 (ENSNLEG00000011967)	ENSNLEG00000031172	SEMA4B (ENSNLEG00000011930)	IDH2 (ENSNLEG00000011819) ##22	ZNF710 (ENSNLEG00000011807)	ENSNLEG00000032838	ANPEP (ENSNLEG00000011767)	MESP2 (ENSNLEG00000011765)	ENSNLEG00000011763	WDR93 (ENSNLEG00000011758)	PEX11A (ENSNLEG00000027966)	PLIN1 (ENSNLEG00000035855)	ENSNLEG00000029376	KIF7 (ENSNLEG00000011722)	TICRR (ENSNLEG00000011685)	RHCG (ENSNLEG00000032456)	POLG (ENSNLEG00000011632)	FANCI (ENSNLEG00000011520)	RLBP1 (ENSNLEG00000011513)
Cercopithecidae	ANCESTRAL SPECIES	7	ENSGT00940000156800	ENSGT00940000157220	ENSGT00940000158881	ENSGT01030000234638.b.b.c.a	ENSGT00390000011608	ENSGT00940000159320	ENSGT00940000162149	ENSGT00390000009453	ENSGT00940000156813	ENSGT00390000014472	ENSGT00940000161367	ENSGT00390000016718	ENSGT00940000158927	ENSGT00390000018318.u.b.a.b.a.a.b	ENSGT00940000154870.D	ENSGT00390000012547.a ##22	ENSGT00940000161170	ENSGT00530000064251	ENSGT00970000193421.C.b	ENSGT00940000154876.b	ENSGT00530000063712.a.a.k	ENSGT00530000063712.a.a.l	ENSGT00390000009995	ENSGT00390000014273.a	ENSGT00950000182920.a	ENSGT00940000159749	ENSGT00520000059044	ENSGT00390000005222	ENSGT00950000182844.b.b.b	ENSGT00390000000453	ENSGT00390000005855
Cercopithecinae	ANCESTRAL SPECIES	2	ENSGT00940000156800	ENSGT00940000157220	ENSGT00940000158881	ENSGT01030000234638.b.b.c.a	ENSGT00390000011608	ENSGT00940000159320	ENSGT00940000162149	ENSGT00390000009453	ENSGT00940000156813	ENSGT00390000014472	ENSGT00940000161367	ENSGT00390000016718	ENSGT00940000158927	ENSGT00390000018318.u.b.a.b.a.a.b	ENSGT00940000154870.D	ENSGT00390000012547.a ##22	ENSGT00940000161170	ENSGT00530000064251	ENSGT00970000193421.C.b	ENSGT00940000154876.b	ENSGT00530000063712.a.a.k	ENSGT00530000063712.a.a.l	ENSGT00390000009995	ENSGT00390000014273.a	ENSGT00950000182920.a	ENSGT00940000159749	ENSGT00520000059044	ENSGT00390000005222	ENSGT00950000182844.b.b.b	ENSGT00390000000453	ENSGT00390000005855
Vervet Monkey	MODERN SPECIES	21	CRTC3 (ENSCSAG00000017034)	BLM (ENSCSAG00000017040)	FURIN (ENSCSAG00000017046)	FES (ENSCSAG00000017051)	MAN2A2 (ENSCSAG00000017063)	HDDC3 (ENSCSAG00000017067)	UNC45A (ENSCSAG00000017071)	RCCD1 (ENSCSAG00000017077)	PRC1 (ENSCSAG00000017083)	VPS33B (ENSCSAG00000017088)	NGRN (ENSCSAG00000017097)	TTLL13 (ENSCSAG00000017100)	GDPGP1 (ENSCSAG00000000367)	CIB1 (ENSCSAG00000017104)	SEMA4B (ENSCSAG00000017114)	IDH2 (ENSCSAG00000017121) ##22	ZNF710 (ENSCSAG00000017122)	ARPIN (ENSCSAG00000017125)	ANPEP (ENSCSAG00000017127)	ENSCSAG00000017130	MESP1 (ENSCSAG00000017134)	WDR93 (ENSCSAG00000017138)	PEX11A (ENSCSAG00000017146)	PLIN1 (ENSCSAG00000017149)	KIF7 (ENSCSAG00000017151)	TICRR (ENSCSAG00000017156)	RHCG (ENSCSAG00000017160)	POLG (ENSCSAG00000017164)	FANCI (ENSCSAG00000017169)	RLBP1 (ENSCSAG00000017173)	ABHD2 (ENSCSAG00000017178)
Cercopithecinae_a	ANCESTRAL SPECIES	1	ENSGT00940000158881	ENSGT00940000157220	ENSGT00940000156800	ENSGT00940000155158.j	ENSGT00390000010652.C	ENSGT00950000183076.a.b.b.a.a	ENSGT00940000163116	ENSGT00940000156876.k.b	ENSGT00940000168012	ENSGT00390000014472.e.b	ENSGT00940000161367	ENSGT00390000016718	ENSGT00940000158927	ENSGT00390000018318.u.b.a.b.a.a.b	ENSGT00940000154870.D	ENSGT00390000012547.a ##22	ENSGT00940000161170	ENSGT00530000064251	ENSGT00970000193421.C.b	ENSGT00940000154876.b	ENSGT00530000063712.a.a.k	ENSGT00530000063712.a.a.l	ENSGT00390000009995	ENSGT00390000014273.a	ENSGT00950000182920.a	ENSGT00940000159749	ENSGT00520000059044	ENSGT00390000005222	ENSGT00950000182844.b.b.b	ENSGT00390000000453	ENSGT00390000005855
Macaca	ANCESTRAL SPECIES	1	ENSGT01030000234638.b.b.c.a	ENSGT00940000158881	ENSGT00940000157220	ENSGT00940000156800	ENSGT00940000155158.j	ENSGT00390000010652.C	ENSGT00950000183076.a.b.b.a.a	ENSGT00940000163116	ENSGT00940000156876.k.b	ENSGT00940000168012	ENSGT00390000014472.e.b	ENSGT00940000161367	ENSGT00390000016718	ENSGT00940000158927	ENSGT00940000154870.D	ENSGT00390000012547.a ##22	ENSGT00530000064251	ENSGT00970000193421.C.b	ENSGT00940000154876.b	ENSGT00390000009995	ENSGT00390000014273.a	ENSGT00950000182920.a	ENSGT00940000159749	ENSGT00520000059044	ENSGT00390000005222	ENSGT00950000182844.b.b.b	ENSGT00390000000453	ENSGT00390000005855	ENSGT00940000160026	ENSGT00940000154799.rb.b	ENSGT00950000182902.b.a
Pig-tailed macaque	MODERN SPECIES	145	MAN2A2 (ENSMNEG00000034720)	FES (ENSMNEG00000042107)	FURIN (ENSMNEG00000034348)	BLM (ENSMNEG00000031251)	ENSMNEG00000033489	CRTC3 (ENSMNEG00000038149)	IQGAP1 (ENSMNEG00000031062)	ZNF774 (ENSMNEG00000039795)	ENSMNEG00000039809	ENSMNEG00000000719	NGRN (ENSMNEG00000044218)	TTLL13 (ENSMNEG00000021414)	GDPGP1 (ENSMNEG00000025389)	CIB1 (ENSMNEG00000021177)	SEMA4B (ENSMNEG00000028997)	IDH2 (ENSMNEG00000042705) ##22	ENSMNEG00000043521	ARPIN (ENSMNEG00000042055)	ANPEP (ENSMNEG00000042997)	MESP2 (ENSMNEG00000036593)	MESP1 (ENSMNEG00000044421)	WDR93 (ENSMNEG00000030231)	PEX11A (ENSMNEG00000036911)	PLIN1 (ENSMNEG00000030806)	KIF7 (ENSMNEG00000041972)	ENSMNEG00000033244	TICRR (ENSMNEG00000039151)	RHCG (ENSMNEG00000038007)	POLG (ENSMNEG00000019045)	FANCI (ENSMNEG00000043844)	RLBP1 (ENSMNEG00000040417)
Macaca_a	ANCESTRAL SPECIES	2	ENSGT00940000162149	ENSGT00940000159320	ENSGT00390000011608	ENSGT01030000234638.b.b.c.a	ENSGT00940000158881	ENSGT00940000157220	ENSGT00940000156800	ENSGT00390000010652.C	ENSGT00950000183076.a.b.b.a.a	ENSGT00940000163116	ENSGT00390000014472.e.b	ENSGT00940000161367	ENSGT00390000016718	ENSGT00940000158927	ENSGT00940000154870.D	ENSGT00390000012547.a ##22	ENSGT00530000064251	ENSGT00970000193421.C.b	ENSGT00940000154876.b	ENSGT00390000009995	ENSGT00390000014273.a	ENSGT00950000182920.a	ENSGT00940000159749	ENSGT00390000005222	ENSGT00950000182844.b.b.b	ENSGT00390000000453	ENSGT00390000005855	ENSGT01100000263493.a.b.b.b.b.a.a.a.b.b.a	ENSGT00940000160026	ENSGT00950000182902.b.a	ENSGT00940000156049
Crab-eating macaque	MODERN SPECIES	17	HDDC3 (ENSMFAG00000054349)	MAN2A2 (ENSMFAG00000035650)	FES (ENSMFAG00000045460)	FURIN (ENSMFAG00000042842)	ENSMFAG00000047976	BLM (ENSMFAG00000042982)	CRTC3 (ENSMFAG00000043264)	ENSMFAG00000053003	ENSMFAG00000063635	IQGAP1 (ENSMFAG00000044182)	ZNF774 (ENSMFAG00000000515)	TTLL13 (ENSMFAG00000000742)	GDPGP1 (ENSMFAG00000023109)	CIB1 (ENSMFAG00000002360)	SEMA4B (ENSMFAG00000034089)	IDH2 (ENSMFAG00000038291) ##22	ENSMFAG00000035746	ENSMFAG00000061779	ARPIN (ENSMFAG00000045494)	AP3S2 (ENSMFAG00000057910)	MESP2 (ENSMFAG00000037257)	MESP1 (ENSMFAG00000045799)	ANPEP (ENSMFAG00000031450)	WDR93 (ENSMFAG00000035737)	PEX11A (ENSMFAG00000055282)	PLIN1 (ENSMFAG00000034321)	KIF7 (ENSMFAG00000044171)	TICRR (ENSMFAG00000031426)	RHCG (ENSMFAG00000003348)	POLG (ENSMFAG00000042476)	FANCI (ENSMFAG00000035758)
Rhesus	MODERN SPECIES	17	MAN2A2 (ENSMMUG00000005103)	FES (ENSMMUG00000004659)	FURIN (ENSMMUG00000004657)	S100A11 (ENSMMUG00000056402)	BLM (ENSMMUG00000019526)	CRTC3 (ENSMMUG00000008886)	ENSMMUG00000065122	IQGAP1 (ENSMMUG00000011882)	ZNF774 (ENSMMUG00000050794)	ENSMMUG00000060326	NGRN (ENSMMUG00000057144)	TTLL13 (ENSMMUG00000054144)	GDPGP1 (ENSMMUG00000029504)	CIB1 (ENSMMUG00000004376)	SEMA4B (ENSMMUG00000023816)	IDH2 (ENSMMUG00000014833) ##22	ENSMMUG00000014831	AP3S2 (ENSMMUG00000029507)	ANPEP (ENSMMUG00000014983)	MESP2 (ENSMMUG00000003584)	MESP1 (ENSMMUG00000010586)	WDR93 (ENSMMUG00000015394)	PEX11A (ENSMMUG00000051701)	PLIN1 (ENSMMUG00000017746)	KIF7 (ENSMMUG00000056204)	TICRR (ENSMMUG00000001254)	RHCG (ENSMMUG00000022678)	POLG (ENSMMUG00000011160)	FANCI (ENSMMUG00000011155)	ENSMMUG00000063925	RLBP1 (ENSMMUG00000014420)
Cercopithecinae_b	ANCESTRAL SPECIES	47									ENSGT00940000168012	ENSGT00390000014472.e.b	ENSGT00940000161367	ENSGT00390000016718	ENSGT00940000158927	ENSGT00390000018318.u.b.a.b.a.a.b	ENSGT00940000154870.D	ENSGT00390000012547.a ##22	ENSGT00940000161170	ENSGT00530000064251	ENSGT00970000193421.C.b	ENSGT00940000154876.b	ENSGT00530000063712.a.a.k	ENSGT00530000063712.a.a.l	ENSGT00390000009995	ENSGT00390000014273.a	ENSGT00950000182920.a	ENSGT00940000159749	ENSGT00520000059044	ENSGT00390000005222	ENSGT00950000182844.b.b.b	ENSGT00390000000453	ENSGT00390000005855
Olive baboon	MODERN SPECIES	17	UNC45A (ENSPANG00000021759)	HDDC3 (ENSPANG00000006975)	MAN2A2 (ENSPANG00000022247)	FES (ENSPANG00000020549)	FURIN (ENSPANG00000020413)	BLM (ENSPANG00000018572)	ENSPANG00000040003	CRTC3 (ENSPANG00000014253)	ENSPANG00000011173	ENSPANG00000042110	ENSPANG00000049262	ENSPANG00000037368	ZNF774 (ENSPANG00000046993)	ENSPANG00000021467	ENSPANG00000050697	IDH2 (ENSPANG00000011176) ##22	ARPIN (ENSPANG00000040247)	AP3S2 (ENSPANG00000024127)	ANPEP (ENSPANG00000021058)	MESP2 (ENSPANG00000021057)	ENSPANG00000045283	WDR93 (ENSPANG00000021468)	PEX11A (ENSPANG00000020633)	PLIN1 (ENSPANG00000014257)	KIF7 (ENSPANG00000011178)	TICRR (ENSPANG00000011179)	ENSPANG00000047678	RHCG (ENSPANG00000021471)	POLG (ENSPANG00000014259)	FANCI (ENSPANG00000014260)	RLBP1 (ENSPANG00000011182)
Cercopithecinae_d	ANCESTRAL SPECIES	119									ENSGT00940000168012	ENSGT00390000014472.e.b	ENSGT00940000161367	ENSGT00390000016718	ENSGT00940000158927	ENSGT00390000018318.u.b.a.b.a.a.b	ENSGT00940000154870.D	ENSGT00390000012547.a ##22	ENSGT00940000161170	ENSGT00530000064251	ENSGT00940000154876.b	ENSGT00530000063712.a.a.k	ENSGT00530000063712.a.a.l	ENSGT00390000009995	ENSGT00390000014273.a	ENSGT00950000182920.a	ENSGT00940000159749	ENSGT00520000059044	ENSGT00390000005222	ENSGT00950000182844.b.b.b	ENSGT00390000000453	ENSGT00390000005855	ENSGT00940000160026
Sooty mangabey	MODERN SPECIES	188											ENSCATG00000043388	TTLL13 (ENSCATG00000033211)	ENSCATG00000038794	CIB1 (ENSCATG00000040269)	SEMA4B (ENSCATG00000036659)	IDH2 (ENSCATG00000011394) ##22	ENSCATG00000039326	ARPIN (ENSCATG00000037995)	ANPEP (ENSCATG00000039333)	MESP2 (ENSCATG00000039467)	MESP1 (ENSCATG00000028176)	WDR93 (ENSCATG00000034611)	PEX11A (ENSCATG00000029697)	PLIN1 (ENSCATG00000041840)	KIF7 (ENSCATG00000014352)	ENSCATG00000030890	TICRR (ENSCATG00000042250)	RHCG (ENSCATG00000034456)	POLG (ENSCATG00000035940)	FANCI (ENSCATG00000037507)	RLBP1 (ENSCATG00000019246)
Drill	MODERN SPECIES	938																IDH2 (ENSMLEG00000034012) ##22	ENSMLEG00000030319	ARPIN (ENSMLEG00000016213)	ANPEP (ENSMLEG00000031827)	ENSMLEG00000015738	WDR93 (ENSMLEG00000040292)	PEX11A (ENSMLEG00000035362)	PLIN1 (ENSMLEG00000035456)	ENSMLEG00000036717	KIF7 (ENSMLEG00000032641)	TICRR (ENSMLEG00000031117)	RHCG (ENSMLEG00000033539)	POLG (ENSMLEG00000039213)	FANCI (ENSMLEG00000032664)	RLBP1 (ENSMLEG00000016354)	ENSMLEG00000041296
Rhinopithecus	ANCESTRAL SPECIES	220										ENSGT00530000063484.a.d	ENSGT00390000014472.g	ENSGT00940000161367	ENSGT00390000016718	ENSGT00940000158927	ENSGT00940000154870.D	ENSGT00390000012547.a ##22	ENSGT00940000161170	ENSGT00530000064251	ENSGT00940000154876.b	ENSGT00530000063712.a.a.k	ENSGT00530000063712.a.a.l	ENSGT00390000009995	ENSGT00390000014273.a	ENSGT00950000182920.a	ENSGT00940000159749	ENSGT00520000059044	ENSGT00390000005222	ENSGT00950000182844.b.b.b	ENSGT00390000000453	ENSGT00390000005855	ENSGT00940000160026
Black snub-nosed monkey	MODERN SPECIES	2190										ENSRBIG00000036510	NGRN (ENSRBIG00000035876)	TTLL13 (ENSRBIG00000041097)	GDPGP1 (ENSRBIG00000030785)	CIB1 (ENSRBIG00000020334)	SEMA4B (ENSRBIG00000027589)	IDH2 (ENSRBIG00000033201) ##22	ZNF710 (ENSRBIG00000005320)	ARPIN (ENSRBIG00000032136)	ANPEP (ENSRBIG00000019904)	MESP2 (ENSRBIG00000033792)	MESP1 (ENSRBIG00000032302)	WDR93 (ENSRBIG00000019621)	PEX11A (ENSRBIG00000037860)	PLIN1 (ENSRBIG00000042174)	KIF7 (ENSRBIG00000032898)	ENSRBIG00000030141	TICRR (ENSRBIG00000040734)	RHCG (ENSRBIG00000031127)
Golden snub-nosed monkey	MODERN SPECIES	2101										ENSRROG00000031318	NGRN (ENSRROG00000028709)	TTLL13 (ENSRROG00000040481)	GDPGP1 (ENSRROG00000018357)	CIB1 (ENSRROG00000042529)	SEMA4B (ENSRROG00000044317)	IDH2 (ENSRROG00000034051) ##22	ZNF710 (ENSRROG00000031875)	ARPIN (ENSRROG00000045640)	ANPEP (ENSRROG00000033722)	MESP2 (ENSRROG00000032672)	MESP1 (ENSRROG00000034702)	WDR93 (ENSRROG00000033222)	PEX11A (ENSRROG00000039309)	PLIN1 (ENSRROG00000033212)	KIF7 (ENSRROG00000032564)	ENSRROG00000017194	TICRR (ENSRROG00000042267)	RHCG (ENSRROG00000043144)	POLG (ENSRROG00000036873)	FANCI (ENSRROG00000012335)	RLBP1 (ENSRROG00000030235)
Platyrrhini	ANCESTRAL SPECIES	38	ENSGT00390000010652.C	ENSGT00940000156800	ENSGT00940000157220	ENSGT00940000158881	ENSGT01030000234638.b.b.c.a	ENSGT00390000011608	ENSGT00940000159320	ENSGT00940000162149	ENSGT00390000009453	ENSGT00940000156813	ENSGT00390000014472	ENSGT00940000161367	ENSGT00390000016718	ENSGT00940000158927	ENSGT00940000154870.D	ENSGT00390000012547.a ##22	ENSGT00940000161170	ENSGT00530000064251	ENSGT00970000193421.C.b	ENSGT00940000154876.b	ENSGT00530000063712.a.a.k	ENSGT00530000063712.a.a.l	ENSGT00390000009995	ENSGT00390000014273.a	ENSGT00950000182920.a	ENSGT00940000159749	ENSGT00520000059044	ENSGT00390000005222	ENSGT00950000182844.b.b.b	ENSGT00390000000453	ENSGT00390000005855
Cebidae	ANCESTRAL SPECIES	36	ENSGT00390000010652.C	ENSGT00940000156800	ENSGT00940000157220	ENSGT00940000158881	ENSGT01030000234638.b.b.c.a	ENSGT00390000011608	ENSGT00940000159320	ENSGT00940000162149	ENSGT00390000009453	ENSGT00940000156813	ENSGT00390000014472	ENSGT00940000161367	ENSGT00390000016718	ENSGT00940000158927	ENSGT00940000154870.D	ENSGT00390000012547.a ##22	ENSGT00940000161170	ENSGT00530000064251	ENSGT00970000193421.C.b	ENSGT00940000154876.b	ENSGT00530000063712.a.a.k	ENSGT00530000063712.a.a.l	ENSGT00390000009995	ENSGT00390000014273.a	ENSGT00950000182920.a	ENSGT00940000159749	ENSGT00520000059044	ENSGT00390000005222	ENSGT00950000182844.b.b.b	ENSGT00390000000453	ENSGT00390000005855
Marmoset	MODERN SPECIES	18	CRTC3 (ENSCJAG00000009892)	BLM (ENSCJAG00000009803)	FURIN (ENSCJAG00000009790)	FES (ENSCJAG00000009738)	MAN2A2 (ENSCJAG00000009678)	HDDC3 (ENSCJAG00000009674)	UNC45A (ENSCJAG00000009605)	RCCD1 (ENSCJAG00000011763)	PRC1 (ENSCJAG00000009561)	VPS33B (ENSCJAG00000009526)	NGRN (ENSCJAG00000009520)	TTLL13 (ENSCJAG00000009514)	GDPGP1 (ENSCJAG00000009511)	CIB1 (ENSCJAG00000009505)	SEMA4B (ENSCJAG00000009482)	IDH2 (ENSCJAG00000009440) ##22	ZNF710 (ENSCJAG00000009435)	ARPIN (ENSCJAG00000007127)	AP3S2 (ENSCJAG00000083796)	ANPEP (ENSCJAG00000007096)	MESP2 (ENSCJAG00000080320)	WDR93 (ENSCJAG00000012691)	PEX11A (ENSCJAG00000012706)	PLIN1 (ENSCJAG00000012709)	MESP1 (ENSCJAG00000007088)	KIF7 (ENSCJAG00000012723)	TICRR (ENSCJAG00000012742)	RHCG (ENSCJAG00000054474)	POLG (ENSCJAG00000012773)	FANCI (ENSCJAG00000012809)	RLBP1 (ENSCJAG00000012881)
Cebidae_a	ANCESTRAL SPECIES	66												ENSGT00390000014472	ENSGT00940000161367	ENSGT00940000158927	ENSGT00940000154870.D	ENSGT00390000012547.a ##22	ENSGT00940000161170	ENSGT00530000064251	ENSGT00940000154876.b	ENSGT00530000063712.a.a.k	ENSGT00530000063712.a.a.l	ENSGT00390000009995	ENSGT00390000014273.a	ENSGT00950000182920.a	ENSGT00940000159749	ENSGT00520000059044	ENSGT00390000005222	ENSGT00950000182844.b.b.b	ENSGT00390000000453	ENSGT00390000005855	ENSGT00940000160026
Capuchin	MODERN SPECIES	19										ADAMTS7 (ENSCCAG00000036763)	ENSCCAG00000028535	NGRN (ENSCCAG00000030018)	TTLL13 (ENSCCAG00000021482)	CIB1 (ENSCCAG00000014836)	SEMA4B (ENSCCAG00000024539)	IDH2 (ENSCCAG00000024978) ##22	ZNF710 (ENSCCAG00000029250)	ARPIN (ENSCCAG00000022649)	ANPEP (ENSCCAG00000030317)	MESP2 (ENSCCAG00000011316)	MESP1 (ENSCCAG00000025283)	WDR93 (ENSCCAG00000032328)	PEX11A (ENSCCAG00000036277)	PLIN1 (ENSCCAG00000035870)	KIF7 (ENSCCAG00000033647)	ENSCCAG00000025798	TICRR (ENSCCAG00000020179)	RHCG (ENSCCAG00000025755)	POLG (ENSCCAG00000007512)	FANCI (ENSCCAG00000025718)	RLBP1 (ENSCCAG00000005991)
Bolivian squirrel monkey	MODERN SPECIES	45	BLM (ENSSBOG00000030957)	ENSSBOG00000019473	FURIN (ENSSBOG00000025759)	FES (ENSSBOG00000030210)	MAN2A2 (ENSSBOG00000024100)	ENSSBOG00000017661	HDDC3 (ENSSBOG00000035028)	UNC45A (ENSSBOG00000030766)	ENSSBOG00000011485	RCCD1 (ENSSBOG00000030496)	VPS33B (ENSSBOG00000015264)	NGRN (ENSSBOG00000029844)	TTLL13 (ENSSBOG00000030893)	CIB1 (ENSSBOG00000008160)	SEMA4B (ENSSBOG00000028869)	IDH2 (ENSSBOG00000021665) ##22	ZNF710 (ENSSBOG00000031952)	ENSSBOG00000035698	ARPIN (ENSSBOG00000018686)	ANPEP (ENSSBOG00000024297)	MESP2 (ENSSBOG00000033873)	MESP1 (ENSSBOG00000000188)	WDR93 (ENSSBOG00000027681)	PEX11A (ENSSBOG00000031420)	PLIN1 (ENSSBOG00000034579)	ENSSBOG00000022131	KIF7 (ENSSBOG00000025528)	TICRR (ENSSBOG00000035734)	RHCG (ENSSBOG00000035536)	POLG (ENSSBOG00000034032)	FANCI (ENSSBOG00000031461)
Mas night monkey	MODERN SPECIES	786	IQGAP1 (ENSANAG00000025400)	CRTC3 (ENSANAG00000027997)	BLM (ENSANAG00000038415)	FURIN (ENSANAG00000027092)	FES (ENSANAG00000037025)	MAN2A2 (ENSANAG00000022414)	HDDC3 (ENSANAG00000028673)	UNC45A (ENSANAG00000022002)	RCCD1 (ENSANAG00000022033)	PRC1 (ENSANAG00000020808)	VPS33B (ENSANAG00000027189)	TTLL13 (ENSANAG00000034328)	GDPGP1 (ENSANAG00000028661)	CIB1 (ENSANAG00000038217)	SEMA4B (ENSANAG00000032944)	IDH2 (ENSANAG00000010018) ##22	ZNF710 (ENSANAG00000023062)	ARPIN (ENSANAG00000031566)	ANPEP (ENSANAG00000037062)	MESP2 (ENSANAG00000030390)	MESP1 (ENSANAG00000036131)	WDR93 (ENSANAG00000036349)	PEX11A (ENSANAG00000030772)	PLIN1 (ENSANAG00000025449)	KIF7 (ENSANAG00000025008)	ENSANAG00000024901	TICRR (ENSANAG00000026551)	RHCG (ENSANAG00000027953)	POLG (ENSANAG00000035130)	FANCI (ENSANAG00000035719)	RLBP1 (ENSANAG00000026141)
Tarsier	MODERN SPECIES	5688																IDH2 (ENSTSYG00000031319) ##22
Strepsirrhini	ANCESTRAL SPECIES	2	ENSGT00390000010652.C	ENSGT00940000156800	ENSGT00940000157220	ENSGT00940000158881	ENSGT01030000234638.b.b.c.a	ENSGT00390000011608	ENSGT00940000159320	ENSGT00940000162149	ENSGT00390000009453	ENSGT00940000156813	ENSGT00390000014472	ENSGT00940000161367	ENSGT00390000016718	ENSGT00940000158927	ENSGT00940000154870.D	ENSGT00390000012547.a ##22	ENSGT00940000161170	ENSGT00530000064251	ENSGT00970000193421.C.b	ENSGT00940000154876.b	ENSGT00530000063712.a.a.k	ENSGT00530000063712.a.a.l	ENSGT00390000009995	ENSGT00390000014273.a	ENSGT00950000182920.a	ENSGT00940000159749	ENSGT00520000059044	ENSGT00390000005222	ENSGT00950000182844.b.b.b	ENSGT00390000000453	ENSGT00390000005855
Lemuriformes	ANCESTRAL SPECIES	43	ENSGT00390000010652.C	ENSGT00940000156800	ENSGT00940000157220	ENSGT00940000158881	ENSGT01030000234638.b.b.c.a	ENSGT00390000011608	ENSGT00940000159320	ENSGT00940000162149	ENSGT00390000009453	ENSGT00940000156813	ENSGT00390000014472	ENSGT00940000161367	ENSGT00390000016718	ENSGT00940000158927	ENSGT00940000154870.D	ENSGT00390000012547.a ##22	ENSGT00940000161170	ENSGT00530000064251	ENSGT00970000193421.C.b.f	ENSGT00940000154876.b	ENSGT00530000063712.a.a.k	ENSGT00530000063712.a.a.l	ENSGT00390000009995	ENSGT00390000014273.a	ENSGT00950000182920.a	ENSGT00940000159749	ENSGT00520000059044	ENSGT00390000005222	ENSGT00950000182844.b.b.b	ENSGT00390000000453	ENSGT00390000005855
Mouse lemur	MODERN SPECIES	31	IQGAP1 (ENSMICG00000006970)	CRTC3 (ENSMICG00000006993)	BLM (ENSMICG00000034442)	FURIN (ENSMICG00000027223)	FES (ENSMICG00000015372)	MAN2A2 (ENSMICG00000015397)	HDDC3 (ENSMICG00000041559)	UNC45A (ENSMICG00000008324)	RCCD1 (ENSMICG00000008338)	PRC1 (ENSMICG00000014826)	VPS33B (ENSMICG00000014841)	NGRN (ENSMICG00000047039)	TTLL13 (ENSMICG00000012703)	CIB1 (ENSMICG00000037035)	SEMA4B (ENSMICG00000012684)	IDH2 (ENSMICG00000011539) ##22	ZNF710 (ENSMICG00000011530)	ARPIN (ENSMICG00000033601)	ENSMICG00000028792	ANPEP (ENSMICG00000005589)	MESP2 (ENSMICG00000044704)	MESP1 (ENSMICG00000031567)	WDR93 (ENSMICG00000008313)	ENSMICG00000046741	PLIN1 (ENSMICG00000008296)	KIF7 (ENSMICG00000040228)	TICRR (ENSMICG00000008265)	RHCG (ENSMICG00000003166)	ADAMTSL3 (ENSMICG00000004994)	SAXO2 (ENSMICG00000038308)	EFL1 (ENSMICG00000027853)
Lemuriformes_a	ANCESTRAL SPECIES	59	ENSGT00390000010652.C	ENSGT00940000156800	ENSGT00940000157220	ENSGT00940000158881	ENSGT01030000234638.b.b.c.a	ENSGT00390000011608	ENSGT00940000159320	ENSGT00940000162149	ENSGT00390000009453	ENSGT00940000156813	ENSGT00390000014472	ENSGT00940000161367	ENSGT00390000016718	ENSGT00940000158927	ENSGT00940000154870.D	ENSGT00390000012547.a ##22	ENSGT00940000161170	ENSGT00530000064251	ENSGT00970000193421.C.b.e.b	ENSGT00940000154876.b	ENSGT00530000063712.a.a.k	ENSGT00530000063712.a.a.l	ENSGT00390000009995	ENSGT00390000014273.a	ENSGT00950000182920.a	ENSGT00940000159749	ENSGT00520000059044	ENSGT00390000005222	ENSGT00950000182844.b.b.b	ENSGT00390000000453	ENSGT00390000005855
Greater bamboo lemur	MODERN SPECIES	1054	CRTC3 (ENSPSMG00000012233)	BLM (ENSPSMG00000012137)	FURIN (ENSPSMG00000012041)	FES (ENSPSMG00000011933)	MAN2A2 (ENSPSMG00000011712)	HDDC3 (ENSPSMG00000011647)	UNC45A (ENSPSMG00000011641)	RCCD1 (ENSPSMG00000011580)	PRC1 (ENSPSMG00000011465)	VPS33B (ENSPSMG00000011329)	NGRN (ENSPSMG00000011146)	ENSPSMG00000011136	GDPGP1 (ENSPSMG00000011120)	CIB1 (ENSPSMG00000011115)	SEMA4B (ENSPSMG00000011086)	IDH2 (ENSPSMG00000011036) ##22	ZNF710 (ENSPSMG00000010986)	ARPIN (ENSPSMG00000010898)	ANPEP (ENSPSMG00000010792)
Coquerels sifaka	MODERN SPECIES	289	IQGAP1 (ENSPCOG00000006034)	CRTC3 (ENSPCOG00000015302)	BLM (ENSPCOG00000000439)	FURIN (ENSPCOG00000017388)	FES (ENSPCOG00000028454)	MAN2A2 (ENSPCOG00000015017)	HDDC3 (ENSPCOG00000001722)	UNC45A (ENSPCOG00000020737)	RCCD1 (ENSPCOG00000020749)	PRC1 (ENSPCOG00000016674)	VPS33B (ENSPCOG00000022064)	NGRN (ENSPCOG00000018441)	TTLL13 (ENSPCOG00000020785)	CIB1 (ENSPCOG00000014951)	SEMA4B (ENSPCOG00000001121)	IDH2 (ENSPCOG00000019385) ##22	ZNF710 (ENSPCOG00000018724)	ARPIN (ENSPCOG00000023002)	ENSPCOG00000026989	ANPEP (ENSPCOG00000014730)	MESP2 (ENSPCOG00000018659)	MESP1 (ENSPCOG00000000342)	WDR93 (ENSPCOG00000022396)	PEX11A (ENSPCOG00000014584)	PLIN1 (ENSPCOG00000014622)	KIF7 (ENSPCOG00000018726)	TICRR (ENSPCOG00000013938)	RHCG (ENSPCOG00000004475)	POLG (ENSPCOG00000022538)	FANCI (ENSPCOG00000021705)	ENSPCOG00000015600
Bushbaby	MODERN SPECIES	144																IDH2 (ENSOGAG00000034936) ##22	ZNF710 (ENSOGAG00000016446)	ARPIN (ENSOGAG00000016438)	AP3S2 (ENSOGAG00000030982)	ANPEP (ENSOGAG00000032572)	MESP2 (ENSOGAG00000025742)	WDR93 (ENSOGAG00000016610)	PEX11A (ENSOGAG00000009370)	PLIN1 (ENSOGAG00000004946)	PCSK6 (ENSOGAG00000003833)	ENSOGAG00000016898	ENSOGAG00000028584	SELENOS (ENSOGAG00000016896)	CHSY1 (ENSOGAG00000003832)	ENSOGAG00000005869	ENSOGAG00000026287
Euarchontoglires_A	ANCESTRAL SPECIES	3	ENSGT00390000010652.C	ENSGT00940000156800	ENSGT00940000157220	ENSGT00940000158881	ENSGT01030000234638.b.b.c.a	ENSGT00390000011608	ENSGT00940000159320	ENSGT00940000162149	ENSGT00390000009453	ENSGT00940000156813	ENSGT00390000014472	ENSGT00940000161367	ENSGT00390000016718	ENSGT00940000158927	ENSGT00940000154870.D	ENSGT00390000012547.a ##22	ENSGT00940000161170	ENSGT00530000064251	ENSGT00970000193421.C.b	ENSGT00940000154876.b	ENSGT00530000063712.a.a.k	ENSGT00530000063712.a.a.l	ENSGT00390000009995	ENSGT00390000014273.a	ENSGT00950000182920.a	ENSGT00940000159749	ENSGT00520000059044	ENSGT00390000005222	ENSGT00950000182844.b.b.b	ENSGT00390000000453	ENSGT00390000005855
Tree shrew	MODERN SPECIES	4353																IDH2 (ENSTBEG00000007748) ##22
Glires	ANCESTRAL SPECIES	15	ENSGT00390000010652.C	ENSGT00940000156800	ENSGT00940000157220	ENSGT00940000158881	ENSGT01030000234638.b.b.c.a	ENSGT00390000011608	ENSGT00940000159320	ENSGT00940000162149	ENSGT00390000009453	ENSGT00940000156813	ENSGT00390000014472	ENSGT00940000161367	ENSGT00390000016718	ENSGT00940000158927	ENSGT00940000154870.D	ENSGT00390000012547.a ##22	ENSGT00940000161170	ENSGT00530000064251	ENSGT00970000193421.C.b	ENSGT00940000154876.b	ENSGT00530000063712.a.a.k	ENSGT00530000063712.a.a.l	ENSGT00390000009995	ENSGT00390000014273.a	ENSGT00950000182920.a	ENSGT00940000159749	ENSGT00520000059044	ENSGT00390000005222	ENSGT00950000182844.b.b.b	ENSGT00390000000453	ENSGT00390000005855
Lagomorpha	ANCESTRAL SPECIES	74	ENSGT00390000010652.C	ENSGT00940000156800	ENSGT00940000157220	ENSGT00940000158881	ENSGT01030000234638.b.b.c.a	ENSGT00390000011608	ENSGT00940000159320	ENSGT00940000162149	ENSGT00390000009453	ENSGT00940000156813	ENSGT00390000014472	ENSGT00940000161367	ENSGT00390000016718	ENSGT00940000158927	ENSGT00940000154870.D	ENSGT00390000012547.a ##22	ENSGT00940000161170	ENSGT00530000064251	ENSGT00970000193421.C.b	ENSGT00940000154876.b	ENSGT00390000009995	ENSGT00390000014273.a	ENSGT00950000182920.a	ENSGT00940000159749	ENSGT00390000005222	ENSGT00950000182844.b.b.b	ENSGT00390000000453	ENSGT00390000005855	ENSGT00940000160026	ENSGT00950000182902.b.a
Pika	MODERN SPECIES	8881																IDH2 (ENSOPRG00000009937) ##22	ZNF710 (ENSOPRG00000009917)
Rabbit	MODERN SPECIES	471	ENSOCUG00000031499	CRTC3 (ENSOCUG00000014304)	BLM (ENSOCUG00000013969)	FURIN (ENSOCUG00000024969)	FES (ENSOCUG00000002188)	MAN2A2 (ENSOCUG00000013777)	HDDC3 (ENSOCUG00000002200)	RCCD1 (ENSOCUG00000026822)	PRC1 (ENSOCUG00000028094)	VPS33B (ENSOCUG00000005468)	NGRN (ENSOCUG00000024766)	TTLL13 (ENSOCUG00000014934)	GDPGP1 (ENSOCUG00000014933)	ENSOCUG00000014926	SEMA4B (ENSOCUG00000014916)	IDH2 (ENSOCUG00000010508) ##22	ZNF710 (ENSOCUG00000015114)	ARPIN (ENSOCUG00000027243)	AP3S2 (ENSOCUG00000031018)	ANPEP (ENSOCUG00000017659)	ENSOCUG00000010997	RHCG (ENSOCUG00000017412)	POLG (ENSOCUG00000031984)	FANCI (ENSOCUG00000011488)	RLBP1 (ENSOCUG00000013541)	ABHD2 (ENSOCUG00000013527)
Rodentia	ANCESTRAL SPECIES	3	ENSGT00940000156800	ENSGT00940000157220	ENSGT00940000158881	ENSGT01030000234638.b.b.c.a	ENSGT00940000167833	ENSGT00390000011608	ENSGT00940000159320	ENSGT00940000162149	ENSGT00390000009453	ENSGT00940000156813	ENSGT00390000014472	ENSGT00940000161367	ENSGT00390000016718	ENSGT00940000158927	ENSGT00940000154870.D	ENSGT00390000012547.a ##22	ENSGT00940000161170	ENSGT00530000064251	ENSGT00970000193421.C.b	ENSGT00940000154876.b	ENSGT00530000063712.a.a.k	ENSGT00530000063712.a.a.l	ENSGT00390000009995	ENSGT00390000014273.a	ENSGT00950000182920.a	ENSGT00940000159749	ENSGT00520000059044	ENSGT00390000005222	ENSGT00950000182844.b.b.b	ENSGT00390000000453	ENSGT00390000005855
Rodentia_B	ANCESTRAL SPECIES	11	ENSGT00940000156800	ENSGT00940000157220	ENSGT00940000158881	ENSGT00940000167833	ENSGT01030000234638.b.b.c.a	ENSGT00390000011608	ENSGT00940000159320	ENSGT00940000162149	ENSGT00390000009453	ENSGT00940000156813	ENSGT00390000014472	ENSGT00940000161367	ENSGT00390000016718	ENSGT00940000158927	ENSGT00940000154870.D	ENSGT00390000012547.a ##22	ENSGT00940000161170	ENSGT00530000064251	ENSGT00970000193421.C.b	ENSGT00940000154876.b	ENSGT00530000063712.a.a.k	ENSGT00530000063712.a.a.l	ENSGT00390000009995	ENSGT00390000014273.a	ENSGT00950000182920.a	ENSGT00940000159749	ENSGT00520000059044	ENSGT00390000005222	ENSGT00950000182844.b.b.b	ENSGT00390000000453	ENSGT00390000005855
Kangaroo rat	MODERN SPECIES	334	Crtc3 (ENSDORG00000010696)	ENSDORG00000010966	Blm (ENSDORG00000011033)	Furin (ENSDORG00000014054)	ENSDORG00000014057	ENSDORG00000014061	ENSDORG00000030197	Hddc3 (ENSDORG00000014065)	Unc45a (ENSDORG00000014066)	ENSDORG00000014069	Vps33b (ENSDORG00000014070)	ENSDORG00000023165	Ttll13 (ENSDORG00000006220)	Sema4b (ENSDORG00000006214)	Gdpgp1 (ENSDORG00000006219)	Idh2 (ENSDORG00000014489) ##22	ENSDORG00000014487	Arpin (ENSDORG00000004248)	Ap3s2 (ENSDORG00000004247)	Anpep (ENSDORG00000008622)	Wdr93 (ENSDORG00000011237)	Pex11a (ENSDORG00000023185)	ENSDORG00000013784	Kif7 (ENSDORG00000007286)	Rhcg (ENSDORG00000012914)	Polg (ENSDORG00000014141)	Fanci (ENSDORG00000014135)	Rlbp1 (ENSDORG00000001939)	Abhd2 (ENSDORG00000001935)	Mfge8 (ENSDORG00000015707)	ENSDORG00000029326
Myomorpha	ANCESTRAL SPECIES	13	ENSGT00940000156800	ENSGT00940000157220	ENSGT00940000158881	ENSGT00940000167833	ENSGT01030000234638.b.b.c.a	ENSGT00390000011608	ENSGT00940000159320	ENSGT00940000162149	ENSGT00390000009453	ENSGT00940000156813	ENSGT00390000014472	ENSGT00940000161367	ENSGT00390000016718	ENSGT00940000158927	ENSGT00940000154870.D	ENSGT00390000012547.a ##22	ENSGT00940000161170	ENSGT00530000064251	ENSGT00970000193421.C.b	ENSGT00940000154876.b	ENSGT00530000063712.a.a.k	ENSGT00530000063712.a.a.l	ENSGT00390000009995	ENSGT00390000014273.a	ENSGT00950000182920.a	ENSGT00940000159749	ENSGT00520000059044	ENSGT00390000005222	ENSGT00950000182844.b.b.b	ENSGT00390000000453	ENSGT00390000005855
Lesser Egyptian jerboa	MODERN SPECIES	65	Crtc3 (ENSJJAG00000021384)	Blm (ENSJJAG00000016322)	Furin (ENSJJAG00000004412)	ENSJJAG00000024339	Man2a2 (ENSJJAG00000001354)	Hddc3 (ENSJJAG00000014541)	Unc45a (ENSJJAG00000017226)	Rccd1 (ENSJJAG00000017472)	Prc1 (ENSJJAG00000012077)	Vps33b (ENSJJAG00000011508)	Ngrn (ENSJJAG00000021806)	Ttll13 (ENSJJAG00000019406)	Gdpgp1 (ENSJJAG00000006994)	Cib1 (ENSJJAG00000023947)	Sema4b (ENSJJAG00000020686)	Idh2 (ENSJJAG00000003839) ##22	ENSJJAG00000021767	Arpin (ENSJJAG00000016933)	Ap3s2 (ENSJJAG00000022334)	Anpep (ENSJJAG00000022111)	Mesp2 (ENSJJAG00000007842)	Mesp1 (ENSJJAG00000024239)	Wdr93 (ENSJJAG00000000817)	Pex11a (ENSJJAG00000014156)	Plin1 (ENSJJAG00000020632)	Kif7 (ENSJJAG00000019257)	Ticrr (ENSJJAG00000019079)	Rhcg (ENSJJAG00000014003)	Polg (ENSJJAG00000020236)	Fanci (ENSJJAG00000017556)	Rlbp1 (ENSJJAG00000019859)
Muroidea	ANCESTRAL SPECIES	12	ENSGT00940000156800	ENSGT00940000157220	ENSGT00940000158881	ENSGT00940000167833	ENSGT01030000234638.b.b.c.a	ENSGT00390000011608	ENSGT00940000159320	ENSGT00940000162149	ENSGT00390000009453	ENSGT00940000156813	ENSGT00390000014472	ENSGT00940000161367	ENSGT00390000016718	ENSGT00940000158927	ENSGT00940000154870.D	ENSGT00390000012547.a ##22	ENSGT00940000161170	ENSGT00530000064251	ENSGT00970000193421.C.b	ENSGT00940000154876.b	ENSGT00530000063712.a.a.k	ENSGT00530000063712.a.a.l	ENSGT00390000009995	ENSGT00390000014273.a	ENSGT00950000182920.a	ENSGT00940000159749	ENSGT00520000059044	ENSGT00390000005222	ENSGT00950000182844.b.b.b	ENSGT00390000000453	ENSGT00390000005855
Muroidea_A	ANCESTRAL SPECIES		ENSGT00940000156800	ENSGT00940000157220	ENSGT00940000158881	ENSGT00940000167833	ENSGT01030000234638.b.b.c.a	ENSGT00390000011608	ENSGT00940000159320	ENSGT00940000162149	ENSGT00390000009453	ENSGT00940000156813	ENSGT00390000014472	ENSGT00940000161367	ENSGT00390000016718	ENSGT00940000158927	ENSGT00940000154870.D	ENSGT00390000012547.a ##22	ENSGT00940000161170	ENSGT00530000064251	ENSGT00970000193421.C.b	ENSGT00940000154876.b	ENSGT00530000063712.a.a.k	ENSGT00530000063712.a.a.l	ENSGT00390000009995	ENSGT00390000014273.a	ENSGT00950000182920.a	ENSGT00940000159749	ENSGT00520000059044	ENSGT00390000005222	ENSGT00950000182844.b.b.b	ENSGT00390000000453	ENSGT00390000005855
Cricetidae	ANCESTRAL SPECIES	1	ENSGT00940000156800	ENSGT00940000157220	ENSGT00940000158881	ENSGT00940000167833	ENSGT01030000234638.b.b.c.a	ENSGT00390000011608	ENSGT00940000159320	ENSGT00940000162149	ENSGT00390000009453	ENSGT00940000156813	ENSGT00390000014472	ENSGT00940000161367	ENSGT00390000016718	ENSGT00940000158927	ENSGT00940000154870.D	ENSGT00390000012547.a ##22	ENSGT00940000161170	ENSGT00530000064251	ENSGT00970000193421.C.b	ENSGT00940000154876.b	ENSGT00530000063712.a.a.k	ENSGT00530000063712.a.a.l	ENSGT00390000009995	ENSGT00390000014273.a	ENSGT00950000182920.a	ENSGT00940000159749	ENSGT00520000059044	ENSGT00390000005222	ENSGT00950000182844.b.b.b	ENSGT00390000000453	ENSGT00390000005855
Cricetidae_B	ANCESTRAL SPECIES	33	ENSGT00940000156800	ENSGT00940000157220	ENSGT00940000158881	ENSGT01030000234638.b.b.c.a	ENSGT00940000167833	ENSGT00390000011608	ENSGT00940000159320	ENSGT00940000162149	ENSGT00390000009453	ENSGT00940000156813	ENSGT00390000014472	ENSGT00940000161367	ENSGT00390000016718	ENSGT00940000158927	ENSGT00940000154870.D	ENSGT00390000012547.a ##22	ENSGT00940000161170	ENSGT00530000064251	ENSGT00970000193421.C.b	ENSGT00940000154876.b	ENSGT00530000063712.a.a.k	ENSGT00530000063712.a.a.l	ENSGT00390000009995	ENSGT00390000014273.a	ENSGT00950000182920.a	ENSGT00940000159749	ENSGT00520000059044	ENSGT00390000005222	ENSGT00950000182844.b.b.b	ENSGT00390000000453	ENSGT00390000005855
Northern American deer mouse	MODERN SPECIES		Crtc3 (ENSPEMG00000000105)	Blm (ENSPEMG00000017348)	Furin (ENSPEMG00000010067)	Fes (ENSPEMG00000007790)	Man2a2 (ENSPEMG00000010591)	Hddc3 (ENSPEMG00000015358)	Unc45a (ENSPEMG00000017875)	Rccd1 (ENSPEMG00000010404)	Prc1 (ENSPEMG00000011356)	Vps33b (ENSPEMG00000020450)	Ngrn (ENSPEMG00000011643)	Ttll13 (ENSPEMG00000005349)	Gdpgp1 (ENSPEMG00000000001)	Cib1 (ENSPEMG00000014252)	Sema4b (ENSPEMG00000004988)	Idh2 (ENSPEMG00000009784) ##22	ENSPEMG00000013020	Arpin (ENSPEMG00000010339)	Ap3s2 (ENSPEMG00000013394)	Anpep (ENSPEMG00000016532)	Mesp2 (ENSPEMG00000014325)	Mesp1 (ENSPEMG00000025923)	Wdr93 (ENSPEMG00000013841)	Pex11a (ENSPEMG00000009547)	Plin1 (ENSPEMG00000018097)	Kif7 (ENSPEMG00000011551)	Ticrr (ENSPEMG00000017591)	Rhcg (ENSPEMG00000017207)	Polg (ENSPEMG00000015138)	Fanci (ENSPEMG00000023214)	Rlbp1 (ENSPEMG00000010592)
Prairie vole	MODERN SPECIES	9	Cfap161 (ENSMOCG00000006777)	Tlnrd1 (ENSMOCG00000008894)	Mesd (ENSMOCG00000021214)	Cemip (ENSMOCG00000006569)	Abhd17c (ENSMOCG00000005210)	Arnt2 (ENSMOCG00000017057)	Ctxnd1 (ENSMOCG00000008499)	Fah (ENSMOCG00000010641)	Zfand6 (ENSMOCG00000012961)	ENSMOCG00000019139	Ngrn (ENSMOCG00000001954)	Ttll13 (ENSMOCG00000004181)	Gdpgp1 (ENSMOCG00000013296)	Cib1 (ENSMOCG00000017460)	Sema4b (ENSMOCG00000021219)	Idh2 (ENSMOCG00000001303) ##22	ENSMOCG00000001861	Arpin (ENSMOCG00000004031)	Ap3s2 (ENSMOCG00000014646)	Anpep (ENSMOCG00000000396)	Mesp2 (ENSMOCG00000000232)	Mesp1 (ENSMOCG00000000607)	Wdr93 (ENSMOCG00000008278)	Pex11a (ENSMOCG00000010626)	ENSMOCG00000012406	Kif7 (ENSMOCG00000001711)	ENSMOCG00000012109	Ticrr (ENSMOCG00000017017)	Rhcg (ENSMOCG00000022826)	Polg (ENSMOCG00000010126)	Fanci (ENSMOCG00000021654)
Cricetinae	ANCESTRAL SPECIES	15	ENSGT00940000156800	ENSGT00940000157220	ENSGT00940000158881	ENSGT00940000167833	ENSGT01030000234638.b.b.c.a	ENSGT00390000011608	ENSGT00940000159320	ENSGT00940000162149	ENSGT00390000009453.k	ENSGT00940000156813	ENSGT00390000014472	ENSGT00940000161367	ENSGT00390000016718	ENSGT00940000158927	ENSGT00940000154870.D	ENSGT00390000012547.a ##22	ENSGT00940000161170	ENSGT00530000064251	ENSGT00970000193421.C.b	ENSGT00940000154876.b	ENSGT00530000063712.a.a.k	ENSGT00530000063712.a.a.l.a	ENSGT00390000009995	ENSGT00390000014273.a	ENSGT00950000182920.a	ENSGT00520000059044	ENSGT00940000159749	ENSGT00390000005222	ENSGT00950000182844.b.b.b	ENSGT00390000000453	ENSGT00390000005855
Chinese hamster chok1gshd	MODERN SPECIES	101	Iqgap1 (ENSCGRG00001018285)	Crtc3 (ENSCGRG00001022473)	Blm (ENSCGRG00001024897)	Furin (ENSCGRG00001017951)	Fes (ENSCGRG00001023097)	Man2a2 (ENSCGRG00001021335)	Hddc3 (ENSCGRG00001010568)	Unc45a (ENSCGRG00001019215)	Rccd1 (ENSCGRG00001020094)	ENSCGRG00001011861	Vps33b (ENSCGRG00001014113)	Ngrn (ENSCGRG00001010335)	Ttll13 (ENSCGRG00001024736)	Cib1 (ENSCGRG00001023687)	Sema4b (ENSCGRG00001021155)	Idh2 (ENSCGRG00001004244) ##22	ENSCGRG00001000281	Arpin (ENSCGRG00001022443)	Ap3s2 (ENSCGRG00001000142)	Anpep (ENSCGRG00001016244)	Mesp2 (ENSCGRG00001015018)	Mesp1 (ENSCGRG00001014587)	Wdr93 (ENSCGRG00001000336)	Pex11a (ENSCGRG00001017053)	Plin1 (ENSCGRG00001013432)	ENSCGRG00001011724	Kif7 (ENSCGRG00001015583)	Ticrr (ENSCGRG00001012535)	Rhcg (ENSCGRG00001023258)	Polg (ENSCGRG00001017862)	Fanci (ENSCGRG00001020390)
Golden Hamster	MODERN SPECIES	693	Crtc3 (ENSMAUG00000013282)	Blm (ENSMAUG00000008953)	Furin (ENSMAUG00000020927)	Fes (ENSMAUG00000019394)	ENSMAUG00000017772	ENSMAUG00000000459	Hddc3 (ENSMAUG00000013551)	Unc45a (ENSMAUG00000020263)	ENSMAUG00000013171	Vps33b (ENSMAUG00000010971)	Ngrn (ENSMAUG00000015177)	Ttll13 (ENSMAUG00000012300)	Gdpgp1 (ENSMAUG00000017397)	Cib1 (ENSMAUG00000000589)	Sema4b (ENSMAUG00000002395)	Idh2 (ENSMAUG00000019935) ##22	Zfp710 (ENSMAUG00000000949)	Arpin (ENSMAUG00000009802)	Ap3s2 (ENSMAUG00000006872)	Anpep (ENSMAUG00000010717)	ENSMAUG00000003641	Wdr93 (ENSMAUG00000011463)	Pex11a (ENSMAUG00000016721)	ENSMAUG00000008691	Kif7 (ENSMAUG00000012171)	Ticrr (ENSMAUG00000017732)	Rhcg (ENSMAUG00000002938)	ENSMAUG00000016933	ENSMAUG00000019060	ENSMAUG00000017797	Fanci (ENSMAUG00000019957)
Murinae	ANCESTRAL SPECIES		ENSGT00390000010652.C	ENSGT00940000156800	ENSGT00940000157220	ENSGT00940000158881	ENSGT01030000234638.b.b.c.a	ENSGT00390000011608	ENSGT00940000159320	ENSGT00940000162149	ENSGT00390000009453	ENSGT00940000156813	ENSGT00390000014472	ENSGT00940000161367	ENSGT00390000016718	ENSGT00940000158927	ENSGT00940000154870.D	ENSGT00390000012547.a ##22	ENSGT00940000161170	ENSGT00530000064251	ENSGT00970000193421.C.b	ENSGT00940000154876.b	ENSGT00530000063712.a.a.k	ENSGT00530000063712.a.a.l	ENSGT00390000009995	ENSGT00390000014273.a	ENSGT00950000182920.a	ENSGT00940000159749	ENSGT00520000059044	ENSGT00390000005222	ENSGT00950000182844.b.b.b	ENSGT00390000000453	ENSGT00390000005855
Mus	ANCESTRAL SPECIES		ENSGT00390000010652.C	ENSGT00940000156800	ENSGT00940000157220	ENSGT00940000158881	ENSGT01030000234638.b.b.c.a	ENSGT00390000011608	ENSGT00940000159320	ENSGT00940000162149	ENSGT00390000009453	ENSGT00940000156813	ENSGT00390000014472	ENSGT00940000161367	ENSGT00390000016718	ENSGT00940000158927	ENSGT00940000154870.D	ENSGT00390000012547.a ##22	ENSGT00530000064251	ENSGT00970000193421.C.b	ENSGT00940000154876.b	ENSGT00530000063712.a.a.k	ENSGT00530000063712.a.a.l	ENSGT00390000009995	ENSGT00390000014273.a	ENSGT00950000182920.a	ENSGT00940000159749	ENSGT00520000059044	ENSGT00390000005222	ENSGT00950000182844.b.b.b	ENSGT00390000000453	ENSGT00390000005855	ENSGT00940000160026
Mus_A	ANCESTRAL SPECIES	1	ENSGT00390000010652.C	ENSGT00940000156800	ENSGT00940000157220	ENSGT00940000158881	ENSGT01030000234638.b.b.c.a	ENSGT00390000011608	ENSGT00940000159320	ENSGT00940000162149	ENSGT00390000009453	ENSGT00940000156813	ENSGT00390000014472	ENSGT00940000161367	ENSGT00390000016718	ENSGT00940000158927	ENSGT00940000154870.D	ENSGT00390000012547.a ##22	ENSGT00530000064251	ENSGT00970000193421.C.b	ENSGT00940000154876.b	ENSGT00530000063712.a.a.k	ENSGT00530000063712.a.a.l	ENSGT00390000009995	ENSGT00390000014273.a	ENSGT00950000182920.a	ENSGT00940000159749	ENSGT00520000059044	ENSGT00390000005222	ENSGT00950000182844.b.b.b	ENSGT00390000000453	ENSGT00390000005855	ENSGT00940000160026
Mus_B	ANCESTRAL SPECIES		ENSGT00390000010652.C	ENSGT00940000156800	ENSGT00940000157220	ENSGT00940000158881	ENSGT01030000234638.b.b.c.a	ENSGT00390000011608	ENSGT00940000159320	ENSGT00940000162149	ENSGT00390000009453	ENSGT00940000156813	ENSGT00390000014472	ENSGT00940000161367	ENSGT00390000016718	ENSGT00940000158927	ENSGT00940000154870.D	ENSGT00390000012547.a ##22	ENSGT00530000064251	ENSGT00970000193421.C.b	ENSGT00940000154876.b	ENSGT00530000063712.a.a.k	ENSGT00530000063712.a.a.l	ENSGT00390000009995	ENSGT00390000014273.a	ENSGT00950000182920.a	ENSGT00940000159749	ENSGT00520000059044	ENSGT00390000005222	ENSGT00950000182844.b.b.b	ENSGT00390000000453	ENSGT00390000005855	ENSGT00940000160026
Mouse	MODERN SPECIES	16	Crtc3 (ENSMUSG00000030527)	Blm (ENSMUSG00000030528)	Furin (ENSMUSG00000030530)	Fes (ENSMUSG00000053158)	Man2a2 (ENSMUSG00000038886)	Hddc3 (ENSMUSG00000030532)	Unc45a (ENSMUSG00000030533)	Prc1 (ENSMUSG00000038943)	Rccd1 (ENSMUSG00000038930)	Vps33b (ENSMUSG00000030534)	Ngrn (ENSMUSG00000047084)	Ttll13 (ENSMUSG00000045467)	Gdpgp1 (ENSMUSG00000050973)	Cib1 (ENSMUSG00000030538)	Sema4b (ENSMUSG00000030539)	Idh2 (ENSMUSG00000030541) ##22	Zfp710 (ENSMUSG00000048897)	Arpin (ENSMUSG00000039043)	Ap3s2 (ENSMUSG00000063801)	Anpep (ENSMUSG00000039062)	Mesp2 (ENSMUSG00000030543)	Mesp1 (ENSMUSG00000030544)	Wdr93 (ENSMUSG00000039099)	Pex11a (ENSMUSG00000030545)	Plin1 (ENSMUSG00000030546)	Kif7 (ENSMUSG00000050382)	Ticrr (ENSMUSG00000046591)	Rhcg (ENSMUSG00000030549)	Polg (ENSMUSG00000039176)	Fanci (ENSMUSG00000039187)	Rlbp1 (ENSMUSG00000039194)
Mus_C	ANCESTRAL SPECIES	13	ENSGT00390000010652.C	ENSGT00940000156800	ENSGT00940000157220	ENSGT00940000158881	ENSGT01030000234638.b.b.c.a	ENSGT00390000011608	ENSGT00940000159320	ENSGT00940000162149	ENSGT00390000009453	ENSGT00940000156813	ENSGT00390000014472	ENSGT00940000161367	ENSGT00390000016718	ENSGT00940000158927	ENSGT00940000154870.D	ENSGT00390000012547.a ##22	ENSGT00530000064251	ENSGT00970000193421.C.b	ENSGT00940000154876.b	ENSGT00530000063712.a.a.k	ENSGT00530000063712.a.a.l	ENSGT00390000009995	ENSGT00390000014273.a	ENSGT00950000182920.a	ENSGT00940000159749	ENSGT00520000059044	ENSGT00390000005222	ENSGT00950000182844.b.b.b	ENSGT00390000000453	ENSGT00390000005855	ENSGT00940000160026
spretus	MODERN SPECIES	16	Crtc3 (MGP_SPRETEiJ_G0031010)	Blm (MGP_SPRETEiJ_G0031009)	Furin (MGP_SPRETEiJ_G0031008)	Fes (MGP_SPRETEiJ_G0031007)	Man2a2 (MGP_SPRETEiJ_G0031006)	Hddc3 (MGP_SPRETEiJ_G0031005)	Unc45a (MGP_SPRETEiJ_G0031004)	Prc1 (MGP_SPRETEiJ_G0031003)	Rccd1 (MGP_SPRETEiJ_G0031002)	Vps33b (MGP_SPRETEiJ_G0031001)	Ngrn (MGP_SPRETEiJ_G0031000)	Ttll13 (MGP_SPRETEiJ_G0030999)	Gdpgp1 (MGP_SPRETEiJ_G0030998)	Cib1 (MGP_SPRETEiJ_G0030997)	Sema4b (MGP_SPRETEiJ_G0030996)	Idh2 (MGP_SPRETEiJ_G0030995) ##22	Zfp710 (MGP_SPRETEiJ_G0030994)	Arpin (MGP_SPRETEiJ_G0030993)	Ap3s2 (MGP_SPRETEiJ_G0030992)	MGP_SPRETEiJ_G0030991	Mesp2 (MGP_SPRETEiJ_G0030990)	Mesp1 (MGP_SPRETEiJ_G0030989)	Wdr93 (MGP_SPRETEiJ_G0030988)	Pex11a (MGP_SPRETEiJ_G0030987)	Plin1 (MGP_SPRETEiJ_G0030986)	Kif7 (MGP_SPRETEiJ_G0030985)	Ticrr (MGP_SPRETEiJ_G0030984)	Rhcg (MGP_SPRETEiJ_G0030983)	Polg (MGP_SPRETEiJ_G0030982)	Fanci (MGP_SPRETEiJ_G0030981)	Rlbp1 (MGP_SPRETEiJ_G0030980)
Steppe mouse	MODERN SPECIES	3233	ENSMSIG00000016448	ENSMSIG00000016462	Furin (ENSMSIG00000016476)	Fes (ENSMSIG00000016522)	Man2a2 (ENSMSIG00000016593)	Hddc3 (ENSMSIG00000016637)	Unc45a (ENSMSIG00000016656)	Rccd1 (ENSMSIG00000016690)	Prc1 (ENSMSIG00000016714)	Vps33b (ENSMSIG00000017446)	Ngrn (ENSMSIG00000017547)	Ttll13 (ENSMSIG00000017551)	Gdpgp1 (ENSMSIG00000017606)	Cib1 (ENSMSIG00000017619)	Sema4b (ENSMSIG00000017681)	Idh2 (ENSMSIG00000017730) ##22	Zfp710 (ENSMSIG00000017757)	ENSMSIG00000017784	Arpin (ENSMSIG00000017788)	Ap3s2 (ENSMSIG00000017828)	Anpep (ENSMSIG00000017851)	Mesp2 (ENSMSIG00000017881)	Mesp1 (ENSMSIG00000017895)	Wdr93 (ENSMSIG00000017904)	ENSMSIG00000017963	Plin1 (ENSMSIG00000017980)	Kif7 (ENSMSIG00000018055)	ENSMSIG00000018144	Ticrr (ENSMSIG00000018150)	ENSMSIG00000018179	ENSMSIG00000018236
Ryukyu mouse	MODERN SPECIES	16	Crtc3 (MGP_CAROLIEiJ_G0029908)	Blm (MGP_CAROLIEiJ_G0029907)	Furin (MGP_CAROLIEiJ_G0029906)	Fes (MGP_CAROLIEiJ_G0029905)	Man2a2 (MGP_CAROLIEiJ_G0029904)	Hddc3 (MGP_CAROLIEiJ_G0029903)	Unc45a (MGP_CAROLIEiJ_G0029902)	Prc1 (MGP_CAROLIEiJ_G0029901)	Rccd1 (MGP_CAROLIEiJ_G0029900)	Vps33b (MGP_CAROLIEiJ_G0029899)	Ngrn (MGP_CAROLIEiJ_G0029898)	Ttll13 (MGP_CAROLIEiJ_G0029897)	Gdpgp1 (MGP_CAROLIEiJ_G0029896)	Cib1 (MGP_CAROLIEiJ_G0029895)	Sema4b (MGP_CAROLIEiJ_G0029894)	Idh2 (MGP_CAROLIEiJ_G0029893) ##22	Zfp710 (MGP_CAROLIEiJ_G0029892)	Arpin (MGP_CAROLIEiJ_G0029891)	Ap3s2 (MGP_CAROLIEiJ_G0029890)	Anpep (MGP_CAROLIEiJ_G0029889)	Mesp2 (MGP_CAROLIEiJ_G0029888)	Mesp1 (MGP_CAROLIEiJ_G0029887)	Wdr93 (MGP_CAROLIEiJ_G0029886)	Pex11a (MGP_CAROLIEiJ_G0029885)	Plin1 (MGP_CAROLIEiJ_G0029884)	Kif7 (MGP_CAROLIEiJ_G0029883)	Ticrr (MGP_CAROLIEiJ_G0029882)	Rhcg (MGP_CAROLIEiJ_G0029881)	Polg (MGP_CAROLIEiJ_G0029880)	Fanci (MGP_CAROLIEiJ_G0029879)	Rlbp1 (MGP_CAROLIEiJ_G0029878)
Shrew mouse	MODERN SPECIES		Crtc3 (MGP_PahariEiJ_G0013130)	Blm (MGP_PahariEiJ_G0013129)	Furin (MGP_PahariEiJ_G0013128)	Fes (MGP_PahariEiJ_G0013127)	Man2a2 (MGP_PahariEiJ_G0013126)	Hddc3 (MGP_PahariEiJ_G0013125)	Unc45a (MGP_PahariEiJ_G0013124)	Prc1 (MGP_PahariEiJ_G0013123)	Rccd1 (MGP_PahariEiJ_G0013122)	Vps33b (MGP_PahariEiJ_G0013121)	Ngrn (MGP_PahariEiJ_G0013120)	Ttll13 (MGP_PahariEiJ_G0013119)	Gdpgp1 (MGP_PahariEiJ_G0013118)	Cib1 (MGP_PahariEiJ_G0013117)	Sema4b (MGP_PahariEiJ_G0013116)	Idh2 (MGP_PahariEiJ_G0013115) ##22	Zfp710 (MGP_PahariEiJ_G0013114)	Arpin (MGP_PahariEiJ_G0013113)	Ap3s2 (MGP_PahariEiJ_G0013112)	Anpep (MGP_PahariEiJ_G0013111)	Mesp2 (MGP_PahariEiJ_G0013110)	Mesp1 (MGP_PahariEiJ_G0013109)	Wdr93 (MGP_PahariEiJ_G0013108)	Pex11a (MGP_PahariEiJ_G0013107)	Plin1 (MGP_PahariEiJ_G0013106)	Kif7 (MGP_PahariEiJ_G0013105)	Ticrr (MGP_PahariEiJ_G0013104)	Rhcg (MGP_PahariEiJ_G0013103)	Polg (MGP_PahariEiJ_G0013102)	Fanci (MGP_PahariEiJ_G0013101)	Rlbp1 (MGP_PahariEiJ_G0013100)
Rat	MODERN SPECIES		Furin (ENSRNOG00000011352)	Fes (ENSRNOG00000011683)	Man2a2 (ENSRNOG00000012055)	LOC108349446 (ENSRNOG00000063715)	Hddc3 (ENSRNOG00000012236)	Unc45a (ENSRNOG00000012357)	Rccd1 (ENSRNOG00000042059)	Prc1 (ENSRNOG00000013057)	Vps33b (ENSRNOG00000013149)	Ngrn (ENSRNOG00000013553)	Ttll13 (ENSRNOG00000056362)	Gdpgp1 (ENSRNOG00000064293)	Cib1 (ENSRNOG00000033498)	Sema4b (ENSRNOG00000025167)	Naa38-ps1 (ENSRNOG00000070736)	Idh2 (ENSRNOG00000013949) ##22	Zfp710 (ENSRNOG00000014278)	Arpin (ENSRNOG00000014589)	Ap3s2 (ENSRNOG00000043141)	Anpep (ENSRNOG00000014610)	Mesp2 (ENSRNOG00000014925)	Mesp1 (ENSRNOG00000014951)	AC096024.2 (ENSRNOG00000034206)	Wdr93 (ENSRNOG00000026514)	Pex11a (ENSRNOG00000015003)	Plin1 (ENSRNOG00000015086)	LOC120099868 (ENSRNOG00000070288)	Kif7 (ENSRNOG00000026857)	Ticrr (ENSRNOG00000015520)	Rhcg (ENSRNOG00000015526)	Atp5mpl-ps1 (ENSRNOG00000070574)
Upper Galilee mountains blind mole rat	MODERN SPECIES	1645	Blm (ENSNGAG00000001275)	Furin (ENSNGAG00000012746)	ENSNGAG00000019478	ENSNGAG00000020580	ENSNGAG00000015735	ENSNGAG00000000437	Unc45a (ENSNGAG00000001703)	Rccd1 (ENSNGAG00000013437)	Prc1 (ENSNGAG00000019170)	Vps33b (ENSNGAG00000016165)	Ngrn (ENSNGAG00000018847)	Ttll13 (ENSNGAG00000020633)	Gdpgp1 (ENSNGAG00000015420)	Cib1 (ENSNGAG00000015587)	Sema4b (ENSNGAG00000001047)	Idh2 (ENSNGAG00000004440) ##22	ENSNGAG00000020045	Arpin (ENSNGAG00000011615)	Ap3s2 (ENSNGAG00000012940)	Anpep (ENSNGAG00000000400)	Mesp2 (ENSNGAG00000000375)	Mesp1 (ENSNGAG00000010748)	Wdr93 (ENSNGAG00000016076)	Pex11a (ENSNGAG00000014804)	ENSNGAG00000018874	Kif7 (ENSNGAG00000000476)	ENSNGAG00000017581	ENSNGAG00000020172	Rhcg (ENSNGAG00000016159)	ENSNGAG00000000264	ENSNGAG00000003596
Rodentia_A	ANCESTRAL SPECIES	2	ENSGT00940000156800	ENSGT00940000157220	ENSGT00940000158881	ENSGT01030000234638.b.b.c.a	ENSGT00940000167833	ENSGT00390000011608	ENSGT00940000159320	ENSGT00940000162149	ENSGT00390000009453	ENSGT00940000156813	ENSGT00390000014472	ENSGT00940000161367	ENSGT00390000016718	ENSGT00940000158927	ENSGT00940000154870.D	ENSGT00390000012547.a ##22	ENSGT00940000161170	ENSGT00530000064251	ENSGT00970000193421.C.b	ENSGT00940000154876.b	ENSGT00530000063712.a.a.k	ENSGT00530000063712.a.a.l	ENSGT00390000009995	ENSGT00390000014273.a	ENSGT00950000182920.a	ENSGT00940000159749	ENSGT00520000059044	ENSGT00390000005222	ENSGT00950000182844.b.b.b	ENSGT00390000000453	ENSGT00390000005855
Sciuridae	ANCESTRAL SPECIES	11	ENSGT00390000010652.C	ENSGT00940000156800	ENSGT00940000157220	ENSGT00940000158881	ENSGT01030000234638.b.b.c.a	ENSGT00390000011608	ENSGT00940000159320	ENSGT00940000162149	ENSGT00390000009453	ENSGT00940000156813	ENSGT00390000014472	ENSGT00940000161367	ENSGT00390000016718	ENSGT00940000158927	ENSGT00940000154870.D	ENSGT00390000012547.a ##22	ENSGT00940000161170	ENSGT00530000064251	ENSGT00970000193421.C.b	ENSGT00940000154876.b	ENSGT00530000063712.a.a.k	ENSGT00530000063712.a.a.l	ENSGT00390000009995	ENSGT00390000014273.a	ENSGT00950000182920.a	ENSGT00940000159749	ENSGT00520000059044	ENSGT00390000005222	ENSGT00950000182844.b.b.b	ENSGT00390000000453	ENSGT00390000005855
Marmotini	ANCESTRAL SPECIES	46	ENSGT00390000010652.C	ENSGT00940000156800	ENSGT00940000157220	ENSGT00940000158881	ENSGT01030000234638.b.b.c.a	ENSGT00390000011608	ENSGT00940000159320	ENSGT00940000162149	ENSGT00390000009453	ENSGT00940000156813	ENSGT00390000014472	ENSGT00940000161367	ENSGT00390000016718	ENSGT00940000158927	ENSGT00940000154870.D	ENSGT00390000012547.a ##22	ENSGT00940000161170	ENSGT00530000064251	ENSGT00970000193421.C.b	ENSGT00940000154876.b	ENSGT00530000063712.a.a.k	ENSGT00530000063712.a.a.l	ENSGT00390000009995	ENSGT00390000014273.a	ENSGT00950000182920.a	ENSGT00940000159749	ENSGT00520000059044	ENSGT00390000005222	ENSGT00950000182844.b.b.b	ENSGT00390000000453	ENSGT00390000005855
Marmotini_b	ANCESTRAL SPECIES	42	ENSGT00390000010652.C	ENSGT00940000156800	ENSGT00940000157220	ENSGT00940000158881	ENSGT01030000234638.b.b.c.a	ENSGT00390000011608	ENSGT00940000159320	ENSGT00940000162149	ENSGT00390000009453	ENSGT00940000156813	ENSGT00390000014472	ENSGT00940000161367	ENSGT00390000016718	ENSGT00940000158927	ENSGT00940000154870.D	ENSGT00390000012547.a ##22	ENSGT00940000161170	ENSGT00530000064251	ENSGT00970000193421.C.b	ENSGT00940000154876.b	ENSGT00530000063712.a.a.k	ENSGT00530000063712.a.a.l	ENSGT00390000009995	ENSGT00390000014273.a	ENSGT00950000182920.a	ENSGT00940000159749	ENSGT00520000059044	ENSGT00390000005222	ENSGT00950000182844.b.b.b	ENSGT00390000000453	ENSGT00390000005855
Squirrel	MODERN SPECIES	83	CRTC3 (ENSSTOG00000001400)	BLM (ENSSTOG00000005000)	FURIN (ENSSTOG00000014817)	FES (ENSSTOG00000014829)	MAN2A2 (ENSSTOG00000014837)	HDDC3 (ENSSTOG00000014848)	UNC45A (ENSSTOG00000014852)	RCCD1 (ENSSTOG00000023982)	PRC1 (ENSSTOG00000016534)	VPS33B (ENSSTOG00000016536)	NGRN (ENSSTOG00000019593)	TTLL13 (ENSSTOG00000010024)	GDPGP1 (ENSSTOG00000010022)	CIB1 (ENSSTOG00000010017)	SEMA4B (ENSSTOG00000010006)	IDH2 (ENSSTOG00000002733) ##22	ZNF710 (ENSSTOG00000029208)	ARPIN (ENSSTOG00000022854)	AP3S2 (ENSSTOG00000005150)	ANPEP (ENSSTOG00000005119)	MESP2 (ENSSTOG00000025753)	MESP1 (ENSSTOG00000026434)	WDR93 (ENSSTOG00000005070)	PEX11A (ENSSTOG00000006148)	PLIN1 (ENSSTOG00000025819)	KIF7 (ENSSTOG00000023960)	ENSSTOG00000006086	RHCG (ENSSTOG00000006067)	POLG (ENSSTOG00000006860)	FANCI (ENSSTOG00000006814)	RLBP1 (ENSSTOG00000005869)
Arctic ground squirrel	MODERN SPECIES	56	CRTC3 (ENSUPAG00010014937)	BLM (ENSUPAG00010014964)	FURIN (ENSUPAG00010015045)	FES (ENSUPAG00010015082)	MAN2A2 (ENSUPAG00010015147)	HDDC3 (ENSUPAG00010015221)	UNC45A (ENSUPAG00010015229)	RCCD1 (ENSUPAG00010015255)	PRC1 (ENSUPAG00010015273)	VPS33B (ENSUPAG00010015502)	NGRN (ENSUPAG00010015547)	TTLL13 (ENSUPAG00010015554)	GDPGP1 (ENSUPAG00010015606)	CIB1 (ENSUPAG00010015609)	SEMA4B (ENSUPAG00010015668)	IDH2 (ENSUPAG00010015704) ##22	ZNF710 (ENSUPAG00010015747)	ARPIN (ENSUPAG00010015769)	AP3S2 (ENSUPAG00010015776)	ANPEP (ENSUPAG00010015791)	MESP2 (ENSUPAG00010015815)	MESP1 (ENSUPAG00010015825)	WDR93 (ENSUPAG00010015839)	PEX11A (ENSUPAG00010015860)	PLIN1 (ENSUPAG00010015869)	KIF7 (ENSUPAG00010015897)	ENSUPAG00010016019	ENSUPAG00010016023	RHCG (ENSUPAG00010016033)	POLG (ENSUPAG00010016054)	FANCI (ENSUPAG00010016153)
Alpin marmot	MODERN SPECIES	33	CRTC3 (ENSMMMG00000019231)	BLM (ENSMMMG00000019250)	FURIN (ENSMMMG00000019258)	FES (ENSMMMG00000019275)	MAN2A2 (ENSMMMG00000019306)	HDDC3 (ENSMMMG00000019363)	UNC45A (ENSMMMG00000019370)	RCCD1 (ENSMMMG00000019386)	PRC1 (ENSMMMG00000019398)	VPS33B (ENSMMMG00000019643)	ENSMMMG00000019658	TTLL13 (ENSMMMG00000019663)	GDPGP1 (ENSMMMG00000019684)	CIB1 (ENSMMMG00000019691)	SEMA4B (ENSMMMG00000019801)	IDH2 (ENSMMMG00000019823) ##22	ZNF710 (ENSMMMG00000019831)	ARPIN (ENSMMMG00000019839)	AP3S2 (ENSMMMG00000019848)	ANPEP (ENSMMMG00000019853)	MESP2 (ENSMMMG00000019870)	WDR93 (ENSMMMG00000019877)	PEX11A (ENSMMMG00000019894)	PLIN1 (ENSMMMG00000019900)	KIF7 (ENSMMMG00000019929)	ENSMMMG00000019976	ENSMMMG00000019982	RHCG (ENSMMMG00000019986)	POLG (ENSMMMG00000020022)	FANCI (ENSMMMG00000020036)	RLBP1 (ENSMMMG00000020074)
Eurasian red squirrel	MODERN SPECIES	11	ENSSVLG00005007636	BLM (ENSSVLG00005007454)	FURIN (ENSSVLG00005007379)	FES (ENSSVLG00005007161)	MAN2A2 (ENSSVLG00005007044)	HDDC3 (ENSSVLG00005007007)	UNC45A (ENSSVLG00005006896)	RCCD1 (ENSSVLG00005006836)	PRC1 (ENSSVLG00005006763)	VPS33B (ENSSVLG00005006670)	ENSSVLG00005006629	TTLL13 (ENSSVLG00005006594)	GDPGP1 (ENSSVLG00005006571)	CIB1 (ENSSVLG00005006496)	SEMA4B (ENSSVLG00005006466)	IDH2 (ENSSVLG00005006430) ##22	ZNF710 (ENSSVLG00005006393)	ARPIN (ENSSVLG00005004661)	AP3S2 (ENSSVLG00005004635)	ANPEP (ENSSVLG00005004602)	MESP2 (ENSSVLG00005004577)	MESP1 (ENSSVLG00005004563)	WDR93 (ENSSVLG00005004504)	PEX11A (ENSSVLG00005004454)	PLIN1 (ENSSVLG00005004414)	ENSSVLG00005004398	KIF7 (ENSSVLG00005004359)	TICRR (ENSSVLG00005004253)	RHCG (ENSSVLG00005004206)	POLG (ENSSVLG00005004153)	FANCI (ENSSVLG00005004021)
Hystricomorpha	ANCESTRAL SPECIES	40	ENSGT00940000156800	ENSGT00940000157220	ENSGT00940000158881	ENSGT01030000234638.b.b.c.a	ENSGT00940000167833	ENSGT00390000011608	ENSGT00940000159320	ENSGT00940000162149	ENSGT00390000009453	ENSGT00940000156813	ENSGT00390000014472	ENSGT00940000161367	ENSGT00390000016718	ENSGT00940000158927	ENSGT00940000154870.D	ENSGT00390000012547.a ##22	ENSGT00940000161170	ENSGT00530000064251	ENSGT00970000193421.C.b	ENSGT00940000154876.b	ENSGT00530000063712.a.a.k	ENSGT00390000009995	ENSGT00390000014273.a	ENSGT00950000182920.a	ENSGT00940000159749	ENSGT00520000059044	ENSGT00390000005222	ENSGT00950000182844.b.b.b	ENSGT00390000000453	ENSGT00390000005855	ENSGT00940000160026
Naked mole-rat female	MODERN SPECIES	6	ENSHGLG00000020616	BLM (ENSHGLG00000013231)	FURIN (ENSHGLG00000012848)	ENSHGLG00000035520	ENSHGLG00000033320	ENSHGLG00000035080	HDDC3 (ENSHGLG00000012218)	UNC45A (ENSHGLG00000011948)	RCCD1 (ENSHGLG00000011725)	PRC1 (ENSHGLG00000010926)	ENSHGLG00000032807	ENSHGLG00000033327	CIB1 (ENSHGLG00000008756)	SEMA4B (ENSHGLG00000008413)	ENSHGLG00000000348	IDH2 (ENSHGLG00000008310) ##22	ENSHGLG00000049498	ARPIN (ENSHGLG00000038897)	AP3S2 (ENSHGLG00000048118)	ANPEP (ENSHGLG00000009602)	ENSHGLG00000032990	KIF7 (ENSHGLG00000007549)	ENSHGLG00000042458	TICRR (ENSHGLG00000007225)	RHCG (ENSHGLG00000006901)	ENSHGLG00000046781	ENSHGLG00000037675	RLBP1 (ENSHGLG00000043956)	ABHD2 (ENSHGLG00000032057)	HAPLN3 (ENSHGLG00000005670)	ENSHGLG00000005607
Hystricomorpha_a	ANCESTRAL SPECIES	25	ENSGT00940000156800	ENSGT00940000157220	ENSGT00940000158881	ENSGT01030000234638.b.b.c.a	ENSGT00940000167833	ENSGT00390000011608	ENSGT00940000159320	ENSGT00940000162149	ENSGT00390000009453	ENSGT00940000156813	ENSGT00390000014472	ENSGT00940000161367	ENSGT00390000016718	ENSGT00940000158927	ENSGT00940000154870.D	ENSGT00390000012547.a ##22	ENSGT00940000161170	ENSGT00530000064251	ENSGT00970000193421.C.b	ENSGT00940000154876.b	ENSGT00530000063712.a.a.k	ENSGT00390000009995	ENSGT00390000014273.a	ENSGT00950000182920.a	ENSGT00940000159749	ENSGT00390000005222	ENSGT00950000182844.b.b.b	ENSGT00390000000453	ENSGT00390000005855	ENSGT00940000160026	ENSGT00950000182902.b.a
Guinea pig	MODERN SPECIES	10	CRTC3 (ENSCPOG00000007878)	BLM (ENSCPOG00000001761)	FURIN (ENSCPOG00000008665)	ENSCPOG00000026159	MAN2A2 (ENSCPOG00000001765)	HDDC3 (ENSCPOG00000001767)	UNC45A (ENSCPOG00000001768)	RCCD1 (ENSCPOG00000007603)	PRC1 (ENSCPOG00000014754)	VPS33B (ENSCPOG00000003707)	NGRN (ENSCPOG00000039950)	TTLL13 (ENSCPOG00000005211)	GDPGP1 (ENSCPOG00000024009)	CIB1 (ENSCPOG00000035061)	SEMA4B (ENSCPOG00000009429)	IDH2 (ENSCPOG00000008488) ##22	ZNF710 (ENSCPOG00000003532)	ARPIN (ENSCPOG00000039273)	AP3S2 (ENSCPOG00000020164)	ANPEP (ENSCPOG00000002499)	MESP2 (ENSCPOG00000019717)	ENSCPOG00000031280	PEX11A (ENSCPOG00000032343)	PLIN1 (ENSCPOG00000009674)	KIF7 (ENSCPOG00000015371)	RHCG (ENSCPOG00000009033)	POLG (ENSCPOG00000007266)	FANCI (ENSCPOG00000007259)	RLBP1 (ENSCPOG00000009639)	ABHD2 (ENSCPOG00000033305)	MFGE8 (ENSCPOG00000003673)
Hystricomorpha_b	ANCESTRAL SPECIES	20	ENSGT00940000156800	ENSGT00940000157220	ENSGT00940000158881	ENSGT01030000234638.b.b.c.a	ENSGT00940000167833	ENSGT00390000011608	ENSGT00940000159320	ENSGT00940000162149	ENSGT00390000009453	ENSGT00940000156813	ENSGT00390000014472	ENSGT00940000161367	ENSGT00390000016718	ENSGT00940000158927	ENSGT00940000154870.D	ENSGT00390000012547.a ##22	ENSGT00940000155498	ENSGT00530000064251	ENSGT00970000193421.C.b	ENSGT00940000154876.b	ENSGT00530000063712.a.a.k	ENSGT00390000009995	ENSGT00390000014273.a	ENSGT00950000182920.a	ENSGT00940000159749	ENSGT00390000005222	ENSGT00950000182844.b.b.b	ENSGT00390000000453	ENSGT00390000005855	ENSGT00940000160026	ENSGT00950000182902.b.a
Degu	MODERN SPECIES	43	ENSODEG00000015233	ENSODEG00000015614	ENSODEG00000015864	HDDC3 (ENSODEG00000016159)	UNC45A (ENSODEG00000016464)	RCCD1 (ENSODEG00000015923)	ENSODEG00000015035	VPS33B (ENSODEG00000015342)	NGRN (ENSODEG00000015148)	TTLL13 (ENSODEG00000015172)	GDPGP1 (ENSODEG00000020367)	CIB1 (ENSODEG00000015561)	SEMA4B (ENSODEG00000015004)	ENSODEG00000020320	ENSODEG00000015254	IDH2 (ENSODEG00000015691) ##22	ENSODEG00000015955	ARPIN (ENSODEG00000015330)	AP3S2 (ENSODEG00000015043)	ANPEP (ENSODEG00000016223)	MESP2 (ENSODEG00000014775)	WDR93 (ENSODEG00000015944)	PEX11A (ENSODEG00000015268)	PLIN1 (ENSODEG00000015512)	KIF7 (ENSODEG00000015309)	TICRR (ENSODEG00000015070)	RHCG (ENSODEG00000015101)	ENSODEG00000015778	ENSODEG00000015280	FANCI (ENSODEG00000016230)	RLBP1 (ENSODEG00000014477)
Long-tailed chinchilla	MODERN SPECIES	123	CRTC3 (ENSCLAG00000010334)	BLM (ENSCLAG00000012111)	FURIN (ENSCLAG00000011148)	FES (ENSCLAG00000009402)	ENSCLAG00000009690	HDDC3 (ENSCLAG00000012332)	UNC45A (ENSCLAG00000010567)	RCCD1 (ENSCLAG00000013802)	PRC1 (ENSCLAG00000010099)	VPS33B (ENSCLAG00000014674)	NGRN (ENSCLAG00000011398)	TTLL13 (ENSCLAG00000010727)	GDPGP1 (ENSCLAG00000007785)	CIB1 (ENSCLAG00000010000)	SEMA4B (ENSCLAG00000008964)	IDH2 (ENSCLAG00000014007) ##22	ENSCLAG00000008141	ARPIN (ENSCLAG00000008054)	AP3S2 (ENSCLAG00000009062)	ANPEP (ENSCLAG00000015432)	ENSCLAG00000012204	WDR93 (ENSCLAG00000010252)	PEX11A (ENSCLAG00000008620)	PLIN1 (ENSCLAG00000012336)	KIF7 (ENSCLAG00000013987)	TICRR (ENSCLAG00000015621)	RHCG (ENSCLAG00000011593)	POLG (ENSCLAG00000009374)	FANCI (ENSCLAG00000009777)	ENSCLAG00000009718	RLBP1 (ENSCLAG00000010583)
Laurasiatheria	ANCESTRAL SPECIES	3	ENSGT00390000010652.C	ENSGT00940000156800	ENSGT00940000157220	ENSGT00940000158881	ENSGT01030000234638.b.b.c.a	ENSGT00390000011608	ENSGT00940000159320	ENSGT00940000162149	ENSGT00390000009453	ENSGT00940000156813	ENSGT00390000014472	ENSGT00940000161367	ENSGT00390000016718	ENSGT00940000158927	ENSGT00940000154870.D	ENSGT00390000012547.a ##22	ENSGT00940000161170	ENSGT00530000064251	ENSGT00970000193421.C.b	ENSGT00940000154876.b	ENSGT00530000063712.a.a.k	ENSGT00530000063712.a.a.l	ENSGT00390000009995	ENSGT00390000014273.a	ENSGT00950000182920.a	ENSGT00940000159749	ENSGT00520000059044	ENSGT00390000005222	ENSGT00950000182844.b.b.b	ENSGT00390000000453	ENSGT00390000005855
Laurasiatheria_a	ANCESTRAL SPECIES	2	ENSGT00390000010652.C	ENSGT00940000156800	ENSGT00940000157220	ENSGT00940000158881	ENSGT01030000234638.b.b.c.a	ENSGT00390000011608	ENSGT00940000159320	ENSGT00940000162149	ENSGT00390000009453	ENSGT00940000156813	ENSGT00390000014472	ENSGT00940000161367	ENSGT00390000016718	ENSGT00940000158927	ENSGT00940000154870.D	ENSGT00390000012547.a ##22	ENSGT00940000161170	ENSGT00530000064251	ENSGT00970000193421.C.b	ENSGT00940000154876.b	ENSGT00530000063712.a.a.k	ENSGT00530000063712.a.a.l	ENSGT00390000009995	ENSGT00390000014273.a	ENSGT00950000182920.a	ENSGT00940000159749	ENSGT00520000059044	ENSGT00390000005222	ENSGT00950000182844.b.b.b	ENSGT00390000000453	ENSGT00390000005855
Artiodactyla	ANCESTRAL SPECIES	3	ENSGT00390000010652.C	ENSGT00940000156800	ENSGT00940000157220	ENSGT00940000158881	ENSGT01030000234638.b.b.c.a	ENSGT00390000011608	ENSGT00940000159320	ENSGT00940000162149	ENSGT00390000009453	ENSGT00940000156813	ENSGT00390000014472	ENSGT00940000161367	ENSGT00390000016718	ENSGT00940000158927	ENSGT00940000154870.D	ENSGT00390000012547.a ##22	ENSGT00940000161170	ENSGT00530000064251	ENSGT00970000193421.C.b	ENSGT00940000154876.b	ENSGT00390000009995	ENSGT00390000014273.a	ENSGT00950000182920.a	ENSGT00940000159749	ENSGT00520000059044	ENSGT00390000005222	ENSGT00950000182844.b.b.b	ENSGT00390000000453	ENSGT00390000005855	ENSGT00940000160026	ENSGT00950000182902.b.a
Artiodactyla_a	ANCESTRAL SPECIES	2	ENSGT00390000010652.C	ENSGT00940000156800	ENSGT00940000157220	ENSGT00940000158881	ENSGT01030000234638.b.b.c.a	ENSGT00390000011608	ENSGT00940000159320	ENSGT00940000162149	ENSGT00390000009453	ENSGT00940000156813	ENSGT00390000014472	ENSGT00940000161367	ENSGT00390000016718	ENSGT00940000158927	ENSGT00940000154870.D	ENSGT00390000012547.a ##22	ENSGT00940000161170	ENSGT00530000064251	ENSGT00970000193421.C.b	ENSGT00940000154876.b	ENSGT00390000009995	ENSGT00390000014273.a	ENSGT00950000182920.a	ENSGT00940000159749	ENSGT00520000059044	ENSGT00390000005222	ENSGT00950000182844.b.b.b	ENSGT00390000000453	ENSGT00390000005855	ENSGT00940000160026	ENSGT00950000182902.b.a
Artiodactyla_b	ANCESTRAL SPECIES	2	ENSGT00390000010652.C	ENSGT00940000156800	ENSGT00940000157220	ENSGT00940000158881	ENSGT01030000234638.b.b.c.a	ENSGT00390000011608	ENSGT00940000159320	ENSGT00940000162149	ENSGT00390000009453	ENSGT00940000156813	ENSGT00390000014472	ENSGT00940000161367	ENSGT00390000016718	ENSGT00940000158927	ENSGT00940000154870.D	ENSGT00390000012547.a ##22	ENSGT00940000161170	ENSGT00530000064251	ENSGT00970000193421.C.b	ENSGT00940000154876.b	ENSGT00530000063712.a.a.k	ENSGT00530000063712.a.a.l	ENSGT00390000009995	ENSGT00390000014273.a	ENSGT00950000182920.a	ENSGT00940000159749	ENSGT00520000059044	ENSGT00390000005222	ENSGT00950000182844.b.b.b	ENSGT00390000000453	ENSGT00390000005855
Cetacea	ANCESTRAL SPECIES	2	ENSGT00940000156800	ENSGT00940000157220	ENSGT00940000158881	ENSGT01030000234638.b.b.c.a	ENSGT00390000011608	ENSGT00940000159320	ENSGT00940000162149	ENSGT00390000009453	ENSGT00940000156813	ENSGT00390000014472	ENSGT00940000161367	ENSGT00390000016718	ENSGT00940000158927	ENSGT00940000154870.D	ENSGT00530000066485.j.b	ENSGT00390000012547.a ##22	ENSGT00940000161170	ENSGT00530000064251	ENSGT00970000193421.C.b.d.b	ENSGT00940000154876.b	ENSGT00530000063712.a.a.k	ENSGT00530000063712.a.a.l	ENSGT00390000009995	ENSGT00390000014273.a	ENSGT00950000182920.a	ENSGT00940000159749	ENSGT00520000059044	ENSGT00390000005222	ENSGT00950000182844.b.b.b	ENSGT00390000000453	ENSGT00390000005855
Odontoceti	ANCESTRAL SPECIES	2	ENSGT00940000156800	ENSGT00940000157220	ENSGT00940000158881	ENSGT01030000234638.b.b.c.a	ENSGT00390000011608	ENSGT00940000159320	ENSGT00940000162149	ENSGT00390000009453	ENSGT00940000156813	ENSGT00390000014472	ENSGT00940000161367	ENSGT00390000016718	ENSGT00940000158927	ENSGT00940000154870.D	ENSGT00530000066485.j.b	ENSGT00390000012547.a ##22	ENSGT00940000161170	ENSGT00530000064251	ENSGT00970000193421.C.b.d.b	ENSGT00940000154876.b	ENSGT00530000063712.a.a.k	ENSGT00530000063712.a.a.l	ENSGT00390000009995	ENSGT00390000014273.a	ENSGT00950000182920.a	ENSGT00940000159749	ENSGT00520000059044	ENSGT00390000005222	ENSGT00940000153434.a.b.a.a.a.a.b	ENSGT00950000182844.b.b.b	ENSGT00390000000453
Odontoceti_a	ANCESTRAL SPECIES	2	ENSGT00390000010652.C	ENSGT00940000156800	ENSGT00940000157220	ENSGT00940000158881	ENSGT01030000234638.b.b.c.a	ENSGT00390000011608	ENSGT00940000159320	ENSGT00940000162149	ENSGT00390000009453	ENSGT00940000156813	ENSGT00390000014472	ENSGT00940000161367	ENSGT00390000016718	ENSGT00940000158927	ENSGT00940000154870.D	ENSGT00390000012547.a ##22	ENSGT00940000161170	ENSGT00530000064251	ENSGT00970000193421.C.b.d.b	ENSGT00940000154876.b	ENSGT00530000063712.a.a.k	ENSGT00530000063712.a.a.l	ENSGT00390000009995	ENSGT00390000014273.a	ENSGT00950000182920.a	ENSGT00940000159749	ENSGT00520000059044	ENSGT00390000005222	ENSGT00940000153434.a.b.a.a.a.a.b	ENSGT00950000182844.b.b.b	ENSGT00390000000453
Dolphin	MODERN SPECIES	6578																IDH2 (ENSTTRG00000000799) ##22	ZNF710 (ENSTTRG00000000797)
Odontoceti_b	ANCESTRAL SPECIES	2	ENSGT00390000010652.C	ENSGT00940000156800	ENSGT00940000157220	ENSGT00940000158881	ENSGT01030000234638.b.b.c.a	ENSGT00390000011608	ENSGT00940000159320	ENSGT00940000162149	ENSGT00390000009453	ENSGT00940000156813	ENSGT00390000014472	ENSGT00940000161367	ENSGT00390000016718	ENSGT00940000158927	ENSGT00940000154870.D	ENSGT00390000012547.a ##22	ENSGT00940000161170	ENSGT00530000064251	ENSGT00970000193421.C.b.d.b	ENSGT00940000154876.b	ENSGT00530000063712.a.a.k	ENSGT00530000063712.a.a.l	ENSGT00390000009995	ENSGT00390000014273.a	ENSGT00950000182920.a	ENSGT00940000159749	ENSGT00520000059044	ENSGT00390000005222	ENSGT00940000153434.a.b.a.a.a.a.b	ENSGT00950000182844.b.b.b	ENSGT00390000000453
Vaquita	MODERN SPECIES	11	CRTC3 (ENSPSNG00000001180)	BLM (ENSPSNG00000001212)	FURIN (ENSPSNG00000001242)	FES (ENSPSNG00000001314)	MAN2A2 (ENSPSNG00000001418)	HDDC3 (ENSPSNG00000001455)	UNC45A (ENSPSNG00000001490)	RCCD1 (ENSPSNG00000001555)	PRC1 (ENSPSNG00000001597)	VPS33B (ENSPSNG00000001673)	NGRN (ENSPSNG00000001785)	ENSPSNG00000001800	GDPGP1 (ENSPSNG00000001828)	CIB1 (ENSPSNG00000001844)	SEMA4B (ENSPSNG00000001873)	IDH2 (ENSPSNG00000001910) ##22	ZNF710 (ENSPSNG00000001925)	ARPIN (ENSPSNG00000001950)	ENSPSNG00000002002	ENSPSNG00000002023	ANPEP (ENSPSNG00000002313)	MESP2 (ENSPSNG00000002834)	MESP1 (ENSPSNG00000002843)	WDR93 (ENSPSNG00000002868)	PEX11A (ENSPSNG00000002902)	PLIN1 (ENSPSNG00000002925)	KIF7 (ENSPSNG00000002955)	ENSPSNG00000002979	TICRR (ENSPSNG00000002997)	ENSPSNG00000003026	RHCG (ENSPSNG00000003046)
Monodontidae	ANCESTRAL SPECIES	22	ENSGT00390000010652.C	ENSGT00940000156800	ENSGT00940000157220	ENSGT00940000158881	ENSGT01030000234638.b.b.c.a	ENSGT00390000011608	ENSGT00940000159320	ENSGT00940000162149	ENSGT00390000009453	ENSGT00940000156813	ENSGT00390000014472	ENSGT00940000161367	ENSGT00390000016718	ENSGT00940000158927	ENSGT00940000154870.D	ENSGT00390000012547.a ##22	ENSGT00940000161170	ENSGT00530000064251	ENSGT00970000193421.C.b.d.b	ENSGT00940000154876.b	ENSGT00530000063712.a.a.k	ENSGT00530000063712.a.a.l	ENSGT00390000009995	ENSGT00390000014273.a	ENSGT00950000182920.a	ENSGT00940000159749	ENSGT00520000059044	ENSGT00390000005222	ENSGT00940000153434.a.b.a.a.a.a.b	ENSGT00950000182844.b.b.b	ENSGT00390000000453
Narwhal	MODERN SPECIES	308	CRTC3 (ENSMMNG00015007207)	BLM (ENSMMNG00015007274)	FURIN (ENSMMNG00015007319)	FES (ENSMMNG00015007431)	MAN2A2 (ENSMMNG00015007612)	HDDC3 (ENSMMNG00015007653)	UNC45A (ENSMMNG00015007722)	RCCD1 (ENSMMNG00015007808)	PRC1 (ENSMMNG00015007842)	VPS33B (ENSMMNG00015007880)	NGRN (ENSMMNG00015007944)	ENSMMNG00015007963	GDPGP1 (ENSMMNG00015007983)	CIB1 (ENSMMNG00015007994)	SEMA4B (ENSMMNG00015008019)	IDH2 (ENSMMNG00015008143) ##22	ZNF710 (ENSMMNG00015008197)	ARPIN (ENSMMNG00015008206)	ENSMMNG00015008227	ANPEP (ENSMMNG00015008243)	MESP2 (ENSMMNG00015008284)	MESP1 (ENSMMNG00015008297)	WDR93 (ENSMMNG00015008315)	PEX11A (ENSMMNG00015008334)	PLIN1 (ENSMMNG00015008345)	KIF7 (ENSMMNG00015008356)	ENSMMNG00015008367	TICRR (ENSMMNG00015008381)	ENSMMNG00015008428	RHCG (ENSMMNG00015008451)	POLG (ENSMMNG00015008482)
Beluga whale	MODERN SPECIES	52	BLM (ENSDLEG00000007694)	FURIN (ENSDLEG00000007721)	FES (ENSDLEG00000007733)	MAN2A2 (ENSDLEG00000007741)	HDDC3 (ENSDLEG00000007755)	UNC45A (ENSDLEG00000007759)	RCCD1 (ENSDLEG00000007763)	PRC1 (ENSDLEG00000007797)	VPS33B (ENSDLEG00000008286)	NGRN (ENSDLEG00000008384)	ENSDLEG00000008406	GDPGP1 (ENSDLEG00000008426)	ENSDLEG00000008437	CIB1 (ENSDLEG00000008468)	SEMA4B (ENSDLEG00000008570)	IDH2 (ENSDLEG00000008634) ##22	ZNF710 (ENSDLEG00000008714)	ARPIN (ENSDLEG00000008735)	ENSDLEG00000008780	ANPEP (ENSDLEG00000008944)	MESP2 (ENSDLEG00000009025)	MESP1 (ENSDLEG00000009048)	ENSDLEG00000009078	ENSDLEG00000009103	PEX11A (ENSDLEG00000009119)	PLIN1 (ENSDLEG00000009130)	KIF7 (ENSDLEG00000009155)	ENSDLEG00000009217	TICRR (ENSDLEG00000009242)	ENSDLEG00000009444	RHCG (ENSDLEG00000009471)
Sperm whale	MODERN SPECIES	2	ENSPCTG00005000495	FURIN (ENSPCTG00005000552)	ENSPCTG00005000676	ENSPCTG00005000875	MAN2A2 (ENSPCTG00005000898)	HDDC3 (ENSPCTG00005000959)	UNC45A (ENSPCTG00005001009)	RCCD1 (ENSPCTG00005001102)	PRC1 (ENSPCTG00005001166)	VPS33B (ENSPCTG00005001247)	ENSPCTG00005001331	GDPGP1 (ENSPCTG00005001340)	CIB1 (ENSPCTG00005001355)	SEMA4B (ENSPCTG00005001379)	ENSPCTG00005001398	IDH2 (ENSPCTG00005001423) ##22	ZNF710 (ENSPCTG00005001455)	ARPIN (ENSPCTG00005001476)	ENSPCTG00005001491	ANPEP (ENSPCTG00005001635)	MESP2 (ENSPCTG00005002047)	MESP1 (ENSPCTG00005002059)	WDR93 (ENSPCTG00005002071)	PEX11A (ENSPCTG00005002095)	PLIN1 (ENSPCTG00005002115)	KIF7 (ENSPCTG00005002129)	ENSPCTG00005002137	TICRR (ENSPCTG00005002165)	ENSPCTG00005002271	RHCG (ENSPCTG00005002285)	POLG (ENSPCTG00005002329)
Blue whale	MODERN SPECIES	11	ENSBMSG00010002382	FURIN (ENSBMSG00010002419)	FES (ENSBMSG00010002555)	MAN2A2 (ENSBMSG00010002865)	HDDC3 (ENSBMSG00010002908)	UNC45A (ENSBMSG00010002958)	RCCD1 (ENSBMSG00010003034)	PRC1 (ENSBMSG00010003136)	VPS33B (ENSBMSG00010003172)	NGRN (ENSBMSG00010003219)	TTLL13 (ENSBMSG00010003240)	GDPGP1 (ENSBMSG00010003265)	CIB1 (ENSBMSG00010003290)	SEMA4B (ENSBMSG00010003333)	ENSBMSG00010003363	IDH2 (ENSBMSG00010003394) ##22	ZNF710 (ENSBMSG00010003411)	ARPIN (ENSBMSG00010003420)	ENSBMSG00010003430	ANPEP (ENSBMSG00010003447)	MESP2 (ENSBMSG00010003467)	MESP1 (ENSBMSG00010003481)	WDR93 (ENSBMSG00010003510)	PLIN1 (ENSBMSG00010003533)	ENSBMSG00010003544	KIF7 (ENSBMSG00010003572)	ENSBMSG00010003599	TICRR (ENSBMSG00010003613)	RHCG (ENSBMSG00010003646)	POLG (ENSBMSG00010003677)	FANCI (ENSBMSG00010003711)
Pecora	ANCESTRAL SPECIES	18	ENSGT00390000010652.C	ENSGT00940000156800	ENSGT00940000157220	ENSGT00940000158881	ENSGT01030000234638.b.b.c.a	ENSGT00390000011608	ENSGT00940000159320	ENSGT00940000162149	ENSGT00390000009453	ENSGT00940000156813	ENSGT00390000014472	ENSGT00940000174015.a	ENSGT00390000016718	ENSGT00940000158927	ENSGT00940000154870.D	ENSGT00390000012547.a ##22	ENSGT00940000161170	ENSGT00530000064251	ENSGT00970000193421.C.b	ENSGT00940000154876.b	ENSGT00530000063712.a.a.k	ENSGT00530000063712.a.a.l	ENSGT00390000009995	ENSGT00390000014273.a	ENSGT00950000182920.a	ENSGT00520000059044	ENSGT00940000159749	ENSGT00390000005222	ENSGT00950000182844.b.b.b	ENSGT00390000000453	ENSGT00390000005855
Yarkand deer	MODERN SPECIES	4	ENSCHYG00000017287	UNC45A (ENSCHYG00000016584)	RCCD1 (ENSCHYG00000016364)	PRC1 (ENSCHYG00000016077)	VPS33B (ENSCHYG00000015548)	NGRN (ENSCHYG00000015459)	ENSCHYG00000015418	ENSCHYG00000015395	GDPGP1 (ENSCHYG00000015375)	ENSCHYG00000015192	SEMA4B (ENSCHYG00000014955)	ENSCHYG00000014920	ENSCHYG00000014877	ENSCHYG00000014856	ENSCHYG00000014776	IDH2 (ENSCHYG00000014515) ##22	ZNF710 (ENSCHYG00000014424)	ARPIN (ENSCHYG00000014270)	AP3S2 (ENSCHYG00000014177)	ANPEP (ENSCHYG00000013903)	MESP2 (ENSCHYG00000013783)	MESP1 (ENSCHYG00000013751)	WDR93 (ENSCHYG00000013441)	PEX11A (ENSCHYG00000013352)	PLIN1 (ENSCHYG00000013247)	ENSCHYG00000013197	KIF7 (ENSCHYG00000012986)	TICRR (ENSCHYG00000012892)	RHCG (ENSCHYG00000012754)	POLG (ENSCHYG00000012478)	FANCI (ENSCHYG00000011622)
Percora_a	ANCESTRAL SPECIES	20	ENSGT00390000010652.C	ENSGT00940000156800	ENSGT00940000157220	ENSGT00940000158881	ENSGT01030000234638.b.b.c.a	ENSGT00390000011608	ENSGT00940000159320	ENSGT00940000162149	ENSGT00390000009453	ENSGT00940000156813	ENSGT00390000014472	ENSGT00940000174015.a	ENSGT00390000016718	ENSGT00940000158927	ENSGT00940000154870.D	ENSGT00390000012547.a ##22	ENSGT00940000161170	ENSGT00530000064251	ENSGT00970000193421.C.b	ENSGT00940000154876.b	ENSGT00530000063712.a.a.k	ENSGT00530000063712.a.a.l	ENSGT00390000009995	ENSGT00390000014273.a	ENSGT00950000182920.a	ENSGT00520000059044	ENSGT00940000159749	ENSGT00390000005222	ENSGT00950000182844.b.b.b	ENSGT00390000000453	ENSGT00390000005855
Bovidae	ANCESTRAL SPECIES	20	ENSGT00940000156800	ENSGT00940000157220	ENSGT00940000158881	ENSGT01030000234638.b.b.c.a	ENSGT00390000011608	ENSGT00940000159320	ENSGT00940000162149	ENSGT00390000009453	ENSGT00940000156813	ENSGT00390000014472	ENSGT00940000174015.a	ENSGT00390000016718	ENSGT00940000158927	ENSGT00940000154870.D	ENSGT00390000012138.a.a.j	ENSGT00390000012547.a ##22	ENSGT00940000161170	ENSGT00530000064251	ENSGT00970000193421.C.b	ENSGT00940000154876.b	ENSGT00390000009995	ENSGT00390000014273.a	ENSGT00950000182920.a	ENSGT00520000059044	ENSGT00940000159749	ENSGT00390000005222	ENSGT00950000182844.b.b.b	ENSGT00390000000453	ENSGT00390000005855	ENSGT00940000160026	ENSGT00950000182902.b.a
Bovinae	ANCESTRAL SPECIES	19	ENSGT00940000156800	ENSGT00940000157220	ENSGT00940000158881	ENSGT01030000234638.b.b.c.a	ENSGT00390000011608	ENSGT00940000159320	ENSGT00940000162149	ENSGT00390000009453	ENSGT00940000156813	ENSGT00390000014472	ENSGT00940000174015.a	ENSGT00390000016718	ENSGT00940000158927	ENSGT00940000154870.D	ENSGT00390000012138.a.a.j	ENSGT00390000012547.a ##22	ENSGT00940000161170	ENSGT00530000064251	ENSGT00970000193421.C.b	ENSGT00940000154876.b	ENSGT00390000009995	ENSGT00390000014273.a	ENSGT00950000182920.a	ENSGT00520000059044	ENSGT00940000159749	ENSGT00390000005222	ENSGT00950000182844.b.b.b	ENSGT00390000000453	ENSGT00390000005855	ENSGT00940000160026	ENSGT00950000182902.b.a
Bos	ANCESTRAL SPECIES	18	ENSGT00940000156800	ENSGT00940000157220	ENSGT00940000158881	ENSGT01030000234638.b.b.c.a	ENSGT00390000011608	ENSGT00940000159320	ENSGT00940000162149	ENSGT00390000009453	ENSGT00940000156813	ENSGT00390000014472	ENSGT00940000174015.a	ENSGT00390000016718	ENSGT00940000158927	ENSGT00940000154870.D	ENSGT00390000012138.a.a.j	ENSGT00390000012547.a ##22	ENSGT00940000161170	ENSGT00530000064251	ENSGT00970000193421.C.b	ENSGT00940000154876.b	ENSGT00530000063712.a.a.k	ENSGT00530000063712.a.a.l	ENSGT00390000009995	ENSGT00390000014273.a.d	ENSGT00950000182920.a	ENSGT00520000059044	ENSGT00940000159749	ENSGT00390000005222	ENSGT00950000182844.b.b.b	ENSGT00390000000453	ENSGT00390000005855
Bos_b	ANCESTRAL SPECIES	18	ENSGT00940000156800	ENSGT00940000157220	ENSGT00940000158881	ENSGT01030000234638.b.b.c.a	ENSGT00390000011608	ENSGT00940000159320	ENSGT00940000162149	ENSGT00390000009453	ENSGT00940000156813	ENSGT00390000014472	ENSGT00940000174015.a	ENSGT00390000016718	ENSGT00940000158927	ENSGT00940000154870.D	ENSGT00390000012138.a.a.j	ENSGT00390000012547.a ##22	ENSGT00940000161170	ENSGT00530000064251	ENSGT00970000193421.C.b	ENSGT00940000154876.b	ENSGT00530000063712.a.a.k	ENSGT00530000063712.a.a.l	ENSGT00390000009995	ENSGT00390000014273.a.d	ENSGT00950000182920.a	ENSGT00520000059044	ENSGT00940000159749	ENSGT00390000005222	ENSGT00950000182844.b.b.b	ENSGT00390000000453	ENSGT00390000005855
Hybrid Bos Indicus	MODERN SPECIES	13	CRTC3 (ENSBIXG00005005661)	BLM (ENSBIXG00005018655)	FURIN (ENSBIXG00005003030)	FES (ENSBIXG00005000057)	MAN2A2 (ENSBIXG00005019060)	HDDC3 (ENSBIXG00005019122)	PRC1 (ENSBIXG00005019198)	UNC45A (ENSBIXG00005003160)	VPS33B (ENSBIXG00005019505)	NGRN (ENSBIXG00005019528)	ENSBIXG00005003184	GDPGP1 (ENSBIXG00005019557)	CIB1 (ENSBIXG00005019579)	SEMA4B (ENSBIXG00005019636)	ENSBIXG00005019653	IDH2 (ENSBIXG00005003221) ##22	ZNF710 (ENSBIXG00005019736)	ARPIN (ENSBIXG00005006453)	AP3S2 (ENSBIXG00005019853)	ANPEP (ENSBIXG00005006254)	MESP2 (ENSBIXG00005019976)	MESP1 (ENSBIXG00005019991)	WDR93 (ENSBIXG00005020035)	PEX11A (ENSBIXG00005020081)	PLIN1 (ENSBIXG00005003299)	ENSBIXG00005020106	KIF7 (ENSBIXG00005003323)	TICRR (ENSBIXG00005007151)	RHCG (ENSBIXG00005020212)	POLG (ENSBIXG00005007341)	FANCI (ENSBIXG00005020571)
Cow	MODERN SPECIES	13	BLM (ENSBTAG00000020301)	FURIN (ENSBTAG00000002939)	FES (ENSBTAG00000002941)	MAN2A2 (ENSBTAG00000018905)	HDDC3 (ENSBTAG00000018637)	UNC45A (ENSBTAG00000018639)	RCCD1 (ENSBTAG00000018642)	PRC1 (ENSBTAG00000018643)	VPS33B (ENSBTAG00000000026)	NGRN (ENSBTAG00000014505)	ENSBTAG00000052625	GDPGP1 (ENSBTAG00000005174)	CIB1 (ENSBTAG00000021275)	SEMA4B (ENSBTAG00000021273)	ENSBTAG00000022947	IDH2 (ENSBTAG00000014093) ##22	ZNF710 (ENSBTAG00000019174)	ARPIN (ENSBTAG00000027059)	AP3S2 (ENSBTAG00000001407)	ANPEP (ENSBTAG00000016881)	MESP2 (ENSBTAG00000027058)	MESP1 (ENSBTAG00000052215)	ENSBTAG00000055143	WDR93 (ENSBTAG00000006141)	PEX11A (ENSBTAG00000006140)	PLIN1 (ENSBTAG00000015350)	ENSBTAG00000050851	KIF7 (ENSBTAG00000002440)	TICRR (ENSBTAG00000002418)	RHCG (ENSBTAG00000005471)	POLG (ENSBTAG00000009098)
Bos_a	ANCESTRAL SPECIES	10	ENSGT00390000010652.C	ENSGT00940000156800	ENSGT00940000157220	ENSGT00940000158881	ENSGT01030000234638.b.b.c.a	ENSGT00390000011608	ENSGT00940000159320	ENSGT00940000162149	ENSGT00390000009453	ENSGT00940000156813	ENSGT00390000014472	ENSGT00390000016718	ENSGT00940000158927	ENSGT00940000154870.D	ENSGT00390000012138.a.a.j	ENSGT00390000012547.a ##22	ENSGT00940000161170	ENSGT00530000064251	ENSGT00970000193421.C.b	ENSGT00940000154876.b	ENSGT00530000063712.a.a.k	ENSGT00530000063712.a.a.l	ENSGT00390000009995	ENSGT00390000014273.a.d	ENSGT00950000182920.a	ENSGT00520000059044	ENSGT00940000159749	ENSGT00390000005222	ENSGT00950000182844.b.b.b	ENSGT00390000000453	ENSGT00390000005855
Wild yak	MODERN SPECIES	704					FES (ENSBMUG00000007557)	MAN2A2 (ENSBMUG00000007488)	HDDC3 (ENSBMUG00000007452)	UNC45A (ENSBMUG00000007402)	PRC1 (ENSBMUG00000007306)	VPS33B (ENSBMUG00000007246)	NGRN (ENSBMUG00000007214)	GDPGP1 (ENSBMUG00000007210)	CIB1 (ENSBMUG00000007196)	SEMA4B (ENSBMUG00000007182)	ENSBMUG00000007168	IDH2 (ENSBMUG00000007161) ##22	ZNF710 (ENSBMUG00000007149)	ARPIN (ENSBMUG00000007142)	AP3S2 (ENSBMUG00000007130)	ANPEP (ENSBMUG00000007105)	MESP1 (ENSBMUG00000007083)	WDR93 (ENSBMUG00000007071)	PEX11A (ENSBMUG00000007058)	PLIN1 (ENSBMUG00000007031)	ENSBMUG00000007018	KIF7 (ENSBMUG00000006610)	TICRR (ENSBMUG00000006427)	RHCG (ENSBMUG00000006381)
Domestic yak	MODERN SPECIES	8	CRTC3 (ENSBGRG00000009614)	BLM (ENSBGRG00000009348)	FURIN (ENSBGRG00000009175)	FES (ENSBGRG00000008515)	MAN2A2 (ENSBGRG00000008221)	HDDC3 (ENSBGRG00000008060)	UNC45A (ENSBGRG00000007354)	RCCD1 (ENSBGRG00000007228)	PRC1 (ENSBGRG00000007005)	VPS33B (ENSBGRG00000006687)	NGRN (ENSBGRG00000006616)	GDPGP1 (ENSBGRG00000006601)	CIB1 (ENSBGRG00000006551)	SEMA4B (ENSBGRG00000006522)	ENSBGRG00000006505	IDH2 (ENSBGRG00000006356) ##22	ZNF710 (ENSBGRG00000006289)	ARPIN (ENSBGRG00000006258)	AP3S2 (ENSBGRG00000006157)	ANPEP (ENSBGRG00000006001)	MESP2 (ENSBGRG00000005954)	MESP1 (ENSBGRG00000005945)	WDR93 (ENSBGRG00000005759)	ENSBGRG00000005653	PLIN1 (ENSBGRG00000005613)	ENSBGRG00000005593	KIF7 (ENSBGRG00000005580)	TICRR (ENSBGRG00000005251)	RHCG (ENSBGRG00000005133)	POLG (ENSBGRG00000004700)	FANCI (ENSBGRG00000004285)
American bison	MODERN SPECIES	3078	CRTC3 (ENSBBBG00000006175)	BLM (ENSBBBG00000023708)	FURIN (ENSBBBG00000006188)	FES (ENSBBBG00000006199)	MAN2A2 (ENSBBBG00000023851)	HDDC3 (ENSBBBG00000000302)	UNC45A (ENSBBBG00000024013)	PRC1 (ENSBBBG00000000288)	VPS33B (ENSBBBG00000024264)	NGRN (ENSBBBG00000024280)	ENSBBBG00000006328	GDPGP1 (ENSBBBG00000024284)	CIB1 (ENSBBBG00000024306)	SEMA4B (ENSBBBG00000024361)	ENSBBBG00000024369	IDH2 (ENSBBBG00000024391) ##22	ZNF710 (ENSBBBG00000024401)	ARPIN (ENSBBBG00000024421)	AP3S2 (ENSBBBG00000024465)	ANPEP (ENSBBBG00000024511)	WDR93 (ENSBBBG00000024558)	PEX11A (ENSBBBG00000008039)	PLIN1 (ENSBBBG00000000257)	KIF7 (ENSBBBG00000000187)	RHCG (ENSBBBG00000006485)	POLG (ENSBBBG00000008229)	FANCI (ENSBBBG00000006654)	RLBP1 (ENSBBBG00000025152)	ABHD2 (ENSBBBG00000025173)	MFGE8 (ENSBBBG00000025271)	HAPLN3 (ENSBBBG00000008259)
Caprinae	ANCESTRAL SPECIES	22	ENSGT00390000010652.C	ENSGT00940000156800	ENSGT00940000157220	ENSGT00940000158881	ENSGT01030000234638.b.b.c.a	ENSGT00390000011608	ENSGT00940000159320	ENSGT00940000162149.c	ENSGT00390000009453	ENSGT00940000156813	ENSGT00390000014472	ENSGT00390000016718	ENSGT00940000158927	ENSGT00940000154870.D	ENSGT00390000012138.a.a.j	ENSGT00390000012547.a ##22	ENSGT00940000161170	ENSGT00530000064251	ENSGT00970000193421.C.b	ENSGT00940000154876.b	ENSGT00530000063712.a.a.k	ENSGT00530000063712.a.a.l	ENSGT00390000009995	ENSGT00390000014273.a	ENSGT00950000182920.a	ENSGT00520000059044	ENSGT00940000159749	ENSGT00390000005222	ENSGT00950000182844.b.b.b	ENSGT00390000000453	ENSGT00390000005855
Goat	MODERN SPECIES	13	ENSCHIG00000006931	BLM (ENSCHIG00000010329)	FURIN (ENSCHIG00000022482)	FES (ENSCHIG00000017144)	MAN2A2 (ENSCHIG00000014616)	HDDC3 (ENSCHIG00000016009)	UNC45A (ENSCHIG00000021276)	RCCD1 (ENSCHIG00000017401)	PRC1 (ENSCHIG00000002572)	VPS33B (ENSCHIG00000013457)	NGRN (ENSCHIG00000005996)	GDPGP1 (ENSCHIG00000009003)	CIB1 (ENSCHIG00000010453)	SEMA4B (ENSCHIG00000021814)	ENSCHIG00000008060	IDH2 (ENSCHIG00000003808) ##22	ZNF710 (ENSCHIG00000013294)	ENSCHIG00000008026	ENSCHIG00000026031	ARPIN (ENSCHIG00000012381)	AP3S2 (ENSCHIG00000009606)	ANPEP (ENSCHIG00000010000)	MESP2 (ENSCHIG00000018743)	MESP1 (ENSCHIG00000008103)	WDR93 (ENSCHIG00000019646)	PEX11A (ENSCHIG00000022361)	PLIN1 (ENSCHIG00000024060)	ENSCHIG00000010195	KIF7 (ENSCHIG00000007739)	TICRR (ENSCHIG00000008062)	RHCG (ENSCHIG00000016640)
Rambouillet Sheep	MODERN SPECIES	9	IQGAP1 (ENSOARG00020017864)	CRTC3 (ENSOARG00020017636)	BLM (ENSOARG00020017449)	FURIN (ENSOARG00020017222)	FES (ENSOARG00020016619)	MAN2A2 (ENSOARG00020016456)	HDDC3 (ENSOARG00020016307)	UNC45A (ENSOARG00020015762)	ENSOARG00020015471	PRC1 (ENSOARG00020014648)	ENSOARG00020014295	ENSOARG00020014240	GDPGP1 (ENSOARG00020014196)	CIB1 (ENSOARG00020014063)	SEMA4B (ENSOARG00020013998)	IDH2 (ENSOARG00020013874) ##22	ZNF710 (ENSOARG00020013794)	ARPIN (ENSOARG00020013709)	AP3S2 (ENSOARG00020013660)	ANPEP (ENSOARG00020013355)	MESP2 (ENSOARG00020013309)	MESP1 (ENSOARG00020013250)	PEX11A (ENSOARG00020012821)	PLIN1 (ENSOARG00020012577)	ENSOARG00020012547	KIF7 (ENSOARG00020012423)	TICRR (ENSOARG00020011429)	RHCG (ENSOARG00020011115)	POLG (ENSOARG00020010916)	FANCI (ENSOARG00020010384)	RLBP1 (ENSOARG00020010241)
Siberian musk deer	MODERN SPECIES	1277	ENSMMSG00000023348	CRTC3 (ENSMMSG00000023356)	BLM (ENSMMSG00000023383)	FURIN (ENSMMSG00000023427)	FES (ENSMMSG00000023470)	MAN2A2 (ENSMMSG00000023610)	HDDC3 (ENSMMSG00000023631)	UNC45A (ENSMMSG00000023674)	RCCD1 (ENSMMSG00000023732)	PRC1 (ENSMMSG00000023750)	VPS33B (ENSMMSG00000023770)	NGRN (ENSMMSG00000023786)	GDPGP1 (ENSMMSG00000023790)	CIB1 (ENSMMSG00000023793)	SEMA4B (ENSMMSG00000023798)	IDH2 (ENSMMSG00000023805) ##22	ZNF710 (ENSMMSG00000023814)	ARPIN (ENSMMSG00000023826)	ANPEP (ENSMMSG00000023839)	MESP2 (ENSMMSG00000023849)	MESP1 (ENSMMSG00000023856)	WDR93 (ENSMMSG00000023867)	PEX11A (ENSMMSG00000023889)	PLIN1 (ENSMMSG00000023880)	KIF7 (ENSMMSG00000023899)	ENSMMSG00000023919	TICRR (ENSMMSG00000023935)	RHCG (ENSMMSG00000023950)	POLG (ENSMMSG00000023962)	FANCI (ENSMMSG00000023979)	RLBP1 (ENSMMSG00000024000)
Camelidae	ANCESTRAL SPECIES	21	ENSGT00390000010652.C	ENSGT00940000156800	ENSGT00940000157220	ENSGT00940000158881	ENSGT01030000234638.b.b.c.a	ENSGT00390000011608	ENSGT00940000159320	ENSGT00940000162149	ENSGT00390000009453	ENSGT00940000156813	ENSGT00390000014472	ENSGT00940000161367	ENSGT00390000016718	ENSGT00940000158927	ENSGT00940000154870.D	ENSGT00390000012547.a ##22	ENSGT00940000161170	ENSGT00530000064251	ENSGT00970000193421.C.b	ENSGT00940000154876.b	ENSGT00530000063712.a.a.k	ENSGT00530000063712.a.a.l	ENSGT00390000009995	ENSGT00390000014273.a	ENSGT00950000182920.a	ENSGT00940000159749	ENSGT00390000005222	ENSGT00950000182844.b.b.b	ENSGT00390000000453	ENSGT00390000005855	ENSGT00940000160026
Arabian camel	MODERN SPECIES	19	CRTC3 (ENSCDRG00005012619)	BLM (ENSCDRG00005012424)	FURIN (ENSCDRG00005012204)	FES (ENSCDRG00005011337)	MAN2A2 (ENSCDRG00005011066)	HDDC3 (ENSCDRG00005010922)	UNC45A (ENSCDRG00005010468)	RCCD1 (ENSCDRG00005010378)	PRC1 (ENSCDRG00005010116)	VPS33B (ENSCDRG00005009843)	NGRN (ENSCDRG00005009773)	TTLL13 (ENSCDRG00005009637)	GDPGP1 (ENSCDRG00005009615)	CIB1 (ENSCDRG00005009559)	SEMA4B (ENSCDRG00005009192)	IDH2 (ENSCDRG00005008978) ##22	ZNF710 (ENSCDRG00005008912)	ARPIN (ENSCDRG00005020781)	AP3S2 (ENSCDRG00005020771)	ANPEP (ENSCDRG00005020759)	MESP2 (ENSCDRG00005020753)	MESP1 (ENSCDRG00005020745)	WDR93 (ENSCDRG00005020735)	PEX11A (ENSCDRG00005020721)	PLIN1 (ENSCDRG00005020709)	KIF7 (ENSCDRG00005020696)	TICRR (ENSCDRG00005020652)	RHCG (ENSCDRG00005020632)	POLG (ENSCDRG00005020609)	FANCI (ENSCDRG00005020577)	RLBP1 (ENSCDRG00005020563)
Suina	ANCESTRAL SPECIES	38	ENSGT00390000010652.C	ENSGT00940000156800	ENSGT00940000157220	ENSGT00940000158881	ENSGT01030000234638.b.b.c.a	ENSGT00390000011608	ENSGT00940000159320	ENSGT00940000162149	ENSGT00390000009453	ENSGT00940000156813	ENSGT00390000014472	ENSGT00940000161367	ENSGT00390000016718	ENSGT00940000158927	ENSGT00940000154870.D	ENSGT00390000012547.a ##22	ENSGT00940000161170	ENSGT00530000064251	ENSGT00970000193421.C.b	ENSGT00940000154876.b	ENSGT00530000063712.a.a.k	ENSGT00530000063712.a.a.l	ENSGT00390000009995	ENSGT00390000014273.a	ENSGT00950000182920.a	ENSGT00520000059044	ENSGT00940000177011	ENSGT00940000159749	ENSGT00390000005222	ENSGT00950000182844.b.b.b	ENSGT00390000000453
Pig	MODERN SPECIES	15	ISL2 (ENSSSCG00000033348)	ETFA (ENSSSCG00000001862)	TMEM266 (ENSSSCG00000001863)	ENSSSCG00000045165	NRG4 (ENSSSCG00000052301)	FBXO22 (ENSSSCG00000061790)	UBE2Q2 (ENSSSCG00000027457)	PRC1 (ENSSSCG00000037307)	VPS33B (ENSSSCG00000033954)	NGRN (ENSSSCG00000055255)	TTLL13 (ENSSSCG00000031810)	GDPGP1 (ENSSSCG00000059314)	CIB1 (ENSSSCG00000001858)	SEMA4B (ENSSSCG00000031719)	ENSSSCG00000062022	IDH2 (ENSSSCG00000001852) ##22	ZNF710 (ENSSSCG00000021361)	ARPIN (ENSSSCG00000001850)	AP3S2 (ENSSSCG00000030174)	ANPEP (ENSSSCG00000001849)	MESP2 (ENSSSCG00000001848)	MESP1 (ENSSSCG00000001847)	WDR93 (ENSSSCG00000001846)	PEX11A (ENSSSCG00000027052)	PLIN1 (ENSSSCG00000001844)	ENSSSCG00000036100	KIF7 (ENSSSCG00000001840)	TICRR (ENSSSCG00000040355)	RHCG (ENSSSCG00000001841)	POLG (ENSSSCG00000001838)	FANCI (ENSSSCG00000001837)
Chacoan peccary	MODERN SPECIES	883	CRTC3 (ENSCWAG00000012563)	BLM (ENSCWAG00000012194)	FURIN (ENSCWAG00000012111)	FES (ENSCWAG00000011529)	MAN2A2 (ENSCWAG00000011390)	HDDC3 (ENSCWAG00000011331)	UNC45A (ENSCWAG00000015870)	RCCD1 (ENSCWAG00000015785)	PRC1 (ENSCWAG00000015693)	VPS33B (ENSCWAG00000015476)	NGRN (ENSCWAG00000015432)	TTLL13 (ENSCWAG00000015219)	GDPGP1 (ENSCWAG00000015206)	CIB1 (ENSCWAG00000015168)	SEMA4B (ENSCWAG00000015050)	IDH2 (ENSCWAG00000014959) ##22	ZNF710 (ENSCWAG00000014904)	ARPIN (ENSCWAG00000014874)	AP3S2 (ENSCWAG00000014827)	ANPEP (ENSCWAG00000014682)	MESP2 (ENSCWAG00000014648)	MESP1 (ENSCWAG00000014611)	WDR93 (ENSCWAG00000014320)	PEX11A (ENSCWAG00000014218)	PLIN1 (ENSCWAG00000014150)	ENSCWAG00000014134	KIF7 (ENSCWAG00000014053)	TICRR (ENSCWAG00000013661)	RHCG (ENSCWAG00000013562)	POLG (ENSCWAG00000013365)	FANCI (ENSCWAG00000013101)
Laurasiatheria_b	ANCESTRAL SPECIES	3	ENSGT00390000010652.C	ENSGT00940000156800	ENSGT00940000157220	ENSGT00940000158881	ENSGT01030000234638.b.b.c.a	ENSGT00390000011608	ENSGT00940000159320	ENSGT00940000162149	ENSGT00390000009453	ENSGT00940000156813	ENSGT00390000014472	ENSGT00940000161367	ENSGT00390000016718	ENSGT00940000158927	ENSGT00940000154870.D	ENSGT00390000012547.a ##22	ENSGT00940000161170	ENSGT00530000064251	ENSGT00970000193421.C.b	ENSGT00940000154876.b	ENSGT00530000063712.a.a.k	ENSGT00530000063712.a.a.l	ENSGT00390000009995	ENSGT00390000014273.a	ENSGT00950000182920.a	ENSGT00940000159749	ENSGT00520000059044	ENSGT00390000005222	ENSGT00950000182844.b.b.b	ENSGT00390000000453	ENSGT00390000005855
Carnivora	ANCESTRAL SPECIES		ENSGT00390000010652.C	ENSGT00940000156800	ENSGT00940000157220	ENSGT00940000158881	ENSGT01030000234638.b.b.c.a	ENSGT00390000011608	ENSGT00940000159320	ENSGT00940000162149	ENSGT00390000009453	ENSGT00940000156813	ENSGT00390000014472	ENSGT00940000161367	ENSGT00390000016718	ENSGT00940000158927	ENSGT00940000154870.D	ENSGT00390000012547.a ##22	ENSGT00940000161170	ENSGT00530000064251	ENSGT00970000193421.C.b	ENSGT00940000154876.b	ENSGT00530000063712.a.a.k	ENSGT00530000063712.a.a.l	ENSGT00390000009995	ENSGT00390000014273.a	ENSGT00950000182920.a	ENSGT00940000159749	ENSGT00520000059044	ENSGT00390000005222	ENSGT00950000182844.b.b.b	ENSGT00390000000453	ENSGT00390000005855
Caniformia	ANCESTRAL SPECIES	12	ENSGT00390000010652.C	ENSGT00940000156800	ENSGT00940000157220	ENSGT00940000158881	ENSGT01030000234638.b.b.c.a	ENSGT00390000011608	ENSGT00940000159320	ENSGT00940000162149	ENSGT00390000009453	ENSGT00940000156813	ENSGT00390000014472	ENSGT00940000161367	ENSGT00390000016718	ENSGT00940000158927	ENSGT00940000154870.D	ENSGT00390000012547.a ##22	ENSGT00940000161170	ENSGT00530000064251	ENSGT00970000193421.C.b	ENSGT00940000154876.b	ENSGT00530000063712.a.a.k	ENSGT00530000063712.a.a.l	ENSGT00390000009995	ENSGT00390000014273.a	ENSGT00950000182920.a	ENSGT00940000159749	ENSGT00520000059044	ENSGT00390000005222	ENSGT00950000182844.b.b.b	ENSGT00390000000453	ENSGT00390000005855
Caniformia_b	ANCESTRAL SPECIES	15	ENSGT00390000010652.C	ENSGT00940000156800	ENSGT00940000157220	ENSGT00940000158881	ENSGT01030000234638.b.b.c.a	ENSGT00390000011608	ENSGT00940000159320	ENSGT00940000162149	ENSGT00390000009453	ENSGT00940000156813	ENSGT00390000014472	ENSGT00940000161367	ENSGT00390000016718	ENSGT00940000158927	ENSGT00940000154870.D	ENSGT00390000012547.a ##22	ENSGT00940000161170	ENSGT00530000064251	ENSGT00970000193421.C.b	ENSGT00940000154876.b	ENSGT00530000063712.a.a.k	ENSGT00530000063712.a.a.l	ENSGT00390000009995	ENSGT00390000014273.a	ENSGT00950000182920.a	ENSGT00940000159749	ENSGT00520000059044	ENSGT00390000005222	ENSGT00950000182844.b.b.b	ENSGT00390000000453	ENSGT00390000005855
Ursidae	ANCESTRAL SPECIES	40	ENSGT00390000010652.C	ENSGT00940000156800	ENSGT00940000157220	ENSGT00940000158881	ENSGT01030000234638.b.b.c.a	ENSGT00390000011608	ENSGT00940000159320	ENSGT00940000162149	ENSGT00390000009453	ENSGT00940000156813.n	ENSGT00390000014472	ENSGT00940000161367	ENSGT00390000016718	ENSGT00940000158927.d	ENSGT00940000154870.D	ENSGT00390000012547.a ##22	ENSGT00940000161170	ENSGT00530000064251	ENSGT00970000193421.C.b	ENSGT00940000154876.b	ENSGT00530000063712.a.a.k	ENSGT00530000063712.a.a.l	ENSGT00390000009995	ENSGT00390000014273.a	ENSGT00950000182920.a	ENSGT00940000159749	ENSGT00520000059044	ENSGT00390000005222	ENSGT00950000182844.b.b.b	ENSGT00390000000453	ENSGT00390000005855
Ursus	ANCESTRAL SPECIES	66	ENSGT00390000010652.C	ENSGT00940000156800	ENSGT00940000157220	ENSGT00940000158881	ENSGT01030000234638.b.b.c.a	ENSGT00390000011608	ENSGT00940000159320	ENSGT00940000162149	ENSGT00390000009453	ENSGT00940000156813.n	ENSGT00390000014472	ENSGT00940000161367	ENSGT00390000016718	ENSGT00940000158927.d	ENSGT00940000154870.D	ENSGT00390000012547.a ##22	ENSGT00940000161170	ENSGT00530000064251	ENSGT00970000193421.C.b	ENSGT00940000154876.b	ENSGT00530000063712.a.a.k	ENSGT00390000009995	ENSGT00390000014273.a	ENSGT00950000182920.a	ENSGT00940000159749	ENSGT00390000005222	ENSGT00950000182844.b.b.b	ENSGT00390000000453	ENSGT00390000005855	ENSGT00940000160026.d	ENSGT00950000182902.b.a
American black bear	MODERN SPECIES	2099																IDH2 (ENSUAMG00000007835) ##22	ZNF710 (ENSUAMG00000007845)
Polar bear	MODERN SPECIES	145	CRTC3 (ENSUMAG00000009280)	ENSUMAG00000009272	BLM (ENSUMAG00000009105)	FURIN (ENSUMAG00000009053)	FES (ENSUMAG00000009012)	MAN2A2 (ENSUMAG00000008884)	HDDC3 (ENSUMAG00000008863)	UNC45A (ENSUMAG00000008248)	PRC1 (ENSUMAG00000008105)	VPS33B (ENSUMAG00000008072)	NGRN (ENSUMAG00000008064)	TTLL13 (ENSUMAG00000008045)	CIB1 (ENSUMAG00000008025)	SEMA4B (ENSUMAG00000008009)	ZNF710 (ENSUMAG00000007999)	IDH2 (ENSUMAG00000007994) ##22	ENSUMAG00000007991	AP3S2 (ENSUMAG00000007987)	ANPEP (ENSUMAG00000007118)	WDR93 (ENSUMAG00000006985)	PEX11A (ENSUMAG00000006980)	PLIN1 (ENSUMAG00000006973)	ENSUMAG00000006968	TICRR (ENSUMAG00000006936)	RHCG (ENSUMAG00000006913)	POLG (ENSUMAG00000006805)	FANCI (ENSUMAG00000006372)	RLBP1 (ENSUMAG00000006295)	ABHD2 (ENSUMAG00000006292)	MFGE8 (ENSUMAG00000006287)	ENSUMAG00000006284
Giant Panda	MODERN SPECIES	19	CRTC3 (ENSAMEG00000013883)	ENSAMEG00000030648	BLM (ENSAMEG00000013843)	FURIN (ENSAMEG00000013812)	FES (ENSAMEG00000013803)	MAN2A2 (ENSAMEG00000013741)	HDDC3 (ENSAMEG00000013735)	UNC45A (ENSAMEG00000013689)	RCCD1 (ENSAMEG00000013688)	PRC1 (ENSAMEG00000013667)	ENSAMEG00000013607	ENSAMEG00000013570	GDPGP1 (ENSAMEG00000018961)	CIB1 (ENSAMEG00000013551)	SEMA4B (ENSAMEG00000013517)	IDH2 (ENSAMEG00000013489) ##22	ZNF710 (ENSAMEG00000027552)	ARPIN (ENSAMEG00000026649)	AP3S2 (ENSAMEG00000002650)	ANPEP (ENSAMEG00000002535)	MESP2 (ENSAMEG00000028927)	MESP1 (ENSAMEG00000027144)	ENSAMEG00000026190	PEX11A (ENSAMEG00000031216)	PLIN1 (ENSAMEG00000013172)	KIF7 (ENSAMEG00000013138)	ENSAMEG00000031007	TICRR (ENSAMEG00000013104)	RHCG (ENSAMEG00000013063)	POLG (ENSAMEG00000013009)	FANCI (ENSAMEG00000012957)
Mustelinae	ANCESTRAL SPECIES	36	ENSGT00390000010652.C	ENSGT00940000156800	ENSGT00940000157220	ENSGT00940000158881	ENSGT01030000234638.b.b.c.a	ENSGT00390000011608	ENSGT00940000159320	ENSGT00940000162149	ENSGT00390000009453	ENSGT00940000156813	ENSGT00390000014472	ENSGT00940000161367	ENSGT00390000016718	ENSGT00940000158927	ENSGT00940000154870.D	ENSGT00390000012547.a ##22	ENSGT00940000161170	ENSGT00530000064251	ENSGT00970000193421.C.b	ENSGT00940000154876.b	ENSGT00530000063712.a.a.l	ENSGT00390000009995	ENSGT00390000014273.a	ENSGT00950000182920.a.b	ENSGT00940000159749	ENSGT00520000059044	ENSGT00390000005222	ENSGT00950000182844.b.b.b	ENSGT00390000000453	ENSGT00390000005855	ENSGT00940000160026
American mink	MODERN SPECIES	81	CRTC3 (ENSNVIG00000016379)	BLM (ENSNVIG00000016476)	FURIN (ENSNVIG00000016579)	FES (ENSNVIG00000016604)	MAN2A2 (ENSNVIG00000016854)	HDDC3 (ENSNVIG00000016903)	UNC45A (ENSNVIG00000016921)	RCCD1 (ENSNVIG00000016944)	PRC1 (ENSNVIG00000016978)	VPS33B (ENSNVIG00000017077)	NGRN (ENSNVIG00000017123)	TTLL13 (ENSNVIG00000017133)	GDPGP1 (ENSNVIG00000017169)	CIB1 (ENSNVIG00000017174)	SEMA4B (ENSNVIG00000017214)	IDH2 (ENSNVIG00000017219) ##22	ZNF710 (ENSNVIG00000017271)	ARPIN (ENSNVIG00000017279)	AP3S2 (ENSNVIG00000017296)	ANPEP (ENSNVIG00000017322)	MESP1 (ENSNVIG00000017382)	WDR93 (ENSNVIG00000017392)	PEX11A (ENSNVIG00000017459)	PLIN1 (ENSNVIG00000017478)	KIF7 (ENSNVIG00000017514)	ENSNVIG00000017536	TICRR (ENSNVIG00000017550)	RHCG (ENSNVIG00000017639)	POLG (ENSNVIG00000017667)	FANCI (ENSNVIG00000017781)	RLBP1 (ENSNVIG00000017952)
Ferret	MODERN SPECIES	260	BLM (ENSMPUG00000015657)	FURIN (ENSMPUG00000015661)	FES (ENSMPUG00000015662)	MAN2A2 (ENSMPUG00000015691)	HDDC3 (ENSMPUG00000015694)	UNC45A (ENSMPUG00000015700)	RCCD1 (ENSMPUG00000015705)	PRC1 (ENSMPUG00000015710)	ENSMPUG00000015714	ENSMPUG00000015716	NGRN (ENSMPUG00000015718)	TTLL13 (ENSMPUG00000015719)	GDPGP1 (ENSMPUG00000015731)	CIB1 (ENSMPUG00000015732)	SEMA4B (ENSMPUG00000015735)	IDH2 (ENSMPUG00000015739) ##22	ZNF710 (ENSMPUG00000015742)	ENSMPUG00000015743	ENSMPUG00000015746	ARPIN (ENSMPUG00000015747)	AP3S2 (ENSMPUG00000015749)	ANPEP (ENSMPUG00000015751)	ENSMPUG00000015755	WDR93 (ENSMPUG00000015756)	ENSMPUG00000019759	PEX11A (ENSMPUG00000015757)	PLIN1 (ENSMPUG00000015758)	KIF7 (ENSMPUG00000015768)	TICRR (ENSMPUG00000015785)	RHCG (ENSMPUG00000015787)	POLG (ENSMPUG00000015789)
Canidae	ANCESTRAL SPECIES	21	ENSGT00940000156800	ENSGT00940000157220	ENSGT00940000158881	ENSGT01030000234638.b.b.c.a	ENSGT00390000011608	ENSGT00940000159320	ENSGT00940000162149	ENSGT00390000009453	ENSGT00940000156813	ENSGT00390000014472	ENSGT00940000161367	ENSGT00390000016718	ENSGT00940000158927	ENSGT00940000154870.D	ENSGT00940000164888.d	ENSGT00390000012547.a ##22	ENSGT00940000161170	ENSGT00530000064251	ENSGT00970000193421.C.b	ENSGT00940000154876.b	ENSGT00530000063712.a.a.k	ENSGT00530000063712.a.a.l	ENSGT00390000009995	ENSGT00390000014273.a	ENSGT00950000182920.a	ENSGT00520000059044	ENSGT00940000159749	ENSGT00390000005222	ENSGT00950000182844.b.b.b	ENSGT00390000000453	ENSGT00390000005855
Canis_lupus	ANCESTRAL SPECIES	23	ENSGT00940000156800	ENSGT00940000157220	ENSGT00940000158881	ENSGT01030000234638.b.b.c.a	ENSGT00390000011608	ENSGT00940000159320	ENSGT00940000162149	ENSGT00390000009453	ENSGT00940000156813	ENSGT00390000014472	ENSGT00940000161367	ENSGT00390000016718	ENSGT00940000158927	ENSGT00940000154870.D	ENSGT00940000164888.d	ENSGT00390000012547.a ##22	ENSGT00940000161170	ENSGT00530000064251	ENSGT00970000193421.C.b	ENSGT00940000154876.b	ENSGT00530000063712.a.a.k	ENSGT00530000063712.a.a.l	ENSGT00390000009995	ENSGT00390000014273.a	ENSGT00950000182920.a	ENSGT00520000059044	ENSGT00940000159749	ENSGT00390000005222	ENSGT00950000182844.b.b.b	ENSGT00390000000453	ENSGT00390000005855
Dingo	MODERN SPECIES	138	BLM (ENSCAFG00020016111)	FURIN (ENSCAFG00020016146)	FES (ENSCAFG00020016150)	MAN2A2 (ENSCAFG00020016162)	HDDC3 (ENSCAFG00020016289)	UNC45A (ENSCAFG00020016291)	RCCD1 (ENSCAFG00020016296)	PRC1 (ENSCAFG00020016312)	VPS33B (ENSCAFG00020016359)	NGRN (ENSCAFG00020016363)	TTLL13 (ENSCAFG00020016366)	GDPGP1 (ENSCAFG00020016372)	CIB1 (ENSCAFG00020016373)	SEMA4B (ENSCAFG00020016378)	ENSCAFG00020016404	IDH2 (ENSCAFG00020016405) ##22	ZNF710 (ENSCAFG00020016407)	ARPIN (ENSCAFG00020016412)	AP3S2 (ENSCAFG00020016415)	ANPEP (ENSCAFG00020016494)	MESP2 (ENSCAFG00020018337)	MESP1 (ENSCAFG00020018338)	WDR93 (ENSCAFG00020018339)	PEX11A (ENSCAFG00020018344)	PLIN1 (ENSCAFG00020018345)	ENSCAFG00020018349	KIF7 (ENSCAFG00020018353)	TICRR (ENSCAFG00020018451)	RHCG (ENSCAFG00020018471)	POLG (ENSCAFG00020018479)	FANCI (ENSCAFG00020018514)
Dog	MODERN SPECIES	22	BLM (ENSCAFG00845002429)	FURIN (ENSCAFG00845002348)	FES (ENSCAFG00845002249)	HDDC3 (ENSCAFG00845002145)	MAN2A2 (ENSCAFG00845001985)	UNC45A (ENSCAFG00845001793)	RCCD1 (ENSCAFG00845001726)	PRC1 (ENSCAFG00845001624)	VPS33B (ENSCAFG00845001444)	NGRN (ENSCAFG00845001368)	TTLL13 (ENSCAFG00845001321)	GDPGP1 (ENSCAFG00845001287)	CIB1 (ENSCAFG00845001241)	SEMA4B (ENSCAFG00845001026)	ENSCAFG00845001000	IDH2 (ENSCAFG00845000909) ##22	ZNF710 (ENSCAFG00845000843)	ARPIN (ENSCAFG00845000787)	AP3S2 (ENSCAFG00845000760)	ANPEP (ENSCAFG00845000639)	MESP2 (ENSCAFG00845000550)	MESP1 (ENSCAFG00845000532)	WDR93 (ENSCAFG00845000490)	PEX11A (ENSCAFG00845000454)	PLIN1 (ENSCAFG00845000427)	KIF7 (ENSCAFG00845000394)	TICRR (ENSCAFG00845000341)	RHCG (ENSCAFG00845000295)	POLG (ENSCAFG00845004161)	ENSCAFG00845004117	FANCI (ENSCAFG00845003918)
Red fox	MODERN SPECIES	1	BLM (ENSVVUG00000006402)	FURIN (ENSVVUG00000006425)	FES (ENSVVUG00000006439)	HDDC3 (ENSVVUG00000006447)	MAN2A2 (ENSVVUG00000006455)	UNC45A (ENSVVUG00000006491)	ENSVVUG00000006500	PRC1 (ENSVVUG00000006549)	VPS33B (ENSVVUG00000006570)	ENSVVUG00000006598	TTLL13 (ENSVVUG00000006600)	GDPGP1 (ENSVVUG00000006616)	CIB1 (ENSVVUG00000006622)	SEMA4B (ENSVVUG00000006642)	ENSVVUG00000006658	IDH2 (ENSVVUG00000006665) ##22	ENSVVUG00000006666	ZNF710 (ENSVVUG00000006696)	ARPIN (ENSVVUG00000006717)	AP3S2 (ENSVVUG00000006723)	ANPEP (ENSVVUG00000006820)	ENSVVUG00000011126	ENSVVUG00000011128	WDR93 (ENSVVUG00000011139)	PEX11A (ENSVVUG00000011166)	PLIN1 (ENSVVUG00000011170)	ENSVVUG00000011178	KIF7 (ENSVVUG00000011186)	TICRR (ENSVVUG00000011314)	RHCG (ENSVVUG00000011374)	POLG (ENSVVUG00000011407)
Felidae	ANCESTRAL SPECIES	1	ENSGT00390000010652.C.d	ENSGT00940000156800	ENSGT00940000157220	ENSGT00940000158881	ENSGT01030000234638.b.b.c.a	ENSGT00390000011608	ENSGT00940000159320	ENSGT00940000162149	ENSGT00390000009453	ENSGT00940000156813	ENSGT00390000014472	ENSGT00940000161367	ENSGT00390000016718	ENSGT00940000158927	ENSGT00940000154870.D	ENSGT00390000012547.a ##22	ENSGT00940000161170	ENSGT00530000064251	ENSGT00970000193421.C.b	ENSGT00940000154876.b	ENSGT00530000063712.a.a.k	ENSGT00530000063712.a.a.l	ENSGT00390000009995	ENSGT00390000014273.a	ENSGT00950000182920.a	ENSGT00940000159749	ENSGT01090000261680	ENSGT00390000005222	ENSGT00950000182844.b.b.b	ENSGT00390000000453	ENSGT00390000005855
Panthera	ANCESTRAL SPECIES	31	ENSGT00940000156800	ENSGT00940000171302	ENSGT00940000157220	ENSGT00940000158881	ENSGT01030000234638.b.b.c.a	ENSGT00390000011608	ENSGT00940000159320	ENSGT00940000162149	ENSGT00390000009453	ENSGT00940000156813	ENSGT00390000014472	ENSGT00940000161367	ENSGT00390000016718	ENSGT00940000158927	ENSGT00940000154870.D	ENSGT00390000012547.a ##22	ENSGT00940000161170	ENSGT00530000064251	ENSGT00970000193421.C.b	ENSGT00940000154876.b	ENSGT00530000063712.a.a.k	ENSGT00530000063712.a.a.l	ENSGT00390000009995	ENSGT00390000014273.a	ENSGT00950000182920.a	ENSGT00940000159749	ENSGT01090000261680	ENSGT00390000005222	ENSGT00950000182844.b.b.b	ENSGT00390000000453	ENSGT00390000005855
Panthera_a	ANCESTRAL SPECIES	33	ENSGT00940000156800	ENSGT00940000171302	ENSGT00940000157220	ENSGT00940000158881	ENSGT01030000234638.b.b.c.a	ENSGT00390000011608	ENSGT00940000159320	ENSGT00940000162149	ENSGT00390000009453	ENSGT00940000156813	ENSGT00390000014472	ENSGT00940000161367	ENSGT00390000016718	ENSGT00940000158927	ENSGT00940000154870.D	ENSGT00390000012547.a ##22	ENSGT00940000161170	ENSGT00530000064251	ENSGT00970000193421.C.b	ENSGT00940000154876.b	ENSGT00530000063712.a.a.k	ENSGT00530000063712.a.a.l	ENSGT00390000009995	ENSGT00390000014273.a	ENSGT00950000182920.a	ENSGT00940000159749	ENSGT01090000261680	ENSGT00390000005222	ENSGT00950000182844.b.b.b	ENSGT00390000000453	ENSGT00390000005855.a
lion	MODERN SPECIES	6	BLM (ENSPLOG00000018572)	ENSPLOG00000018631	FURIN (ENSPLOG00000018670)	FES (ENSPLOG00000018837)	MAN2A2 (ENSPLOG00000019142)	HDDC3 (ENSPLOG00000019175)	UNC45A (ENSPLOG00000019288)	RCCD1 (ENSPLOG00000019497)	PRC1 (ENSPLOG00000019636)	VPS33B (ENSPLOG00000019738)	NGRN (ENSPLOG00000020027)	TTLL13 (ENSPLOG00000020051)	GDPGP1 (ENSPLOG00000020214)	CIB1 (ENSPLOG00000020228)	SEMA4B (ENSPLOG00000020259)	IDH2 (ENSPLOG00000020298) ##22	ZNF710 (ENSPLOG00000020382)	ARPIN (ENSPLOG00000020397)	ENSPLOG00000020444	ANPEP (ENSPLOG00000020496)	MESP2 (ENSPLOG00000020632)	MESP1 (ENSPLOG00000020658)	WDR93 (ENSPLOG00000020687)	PEX11A (ENSPLOG00000020785)	PLIN1 (ENSPLOG00000020813)	KIF7 (ENSPLOG00000020910)	ENSPLOG00000020984	TICRR (ENSPLOG00000020994)	RHCG (ENSPLOG00000021115)	POLG (ENSPLOG00000021165)	ENSPLOG00000021409
leopard	MODERN SPECIES	35	CRTC3 (ENSPPRG00000022790)	BLM (ENSPPRG00000002471)	FURIN (ENSPPRG00000003153)	FES (ENSPPRG00000006609)	MAN2A2 (ENSPPRG00000006998)	HDDC3 (ENSPPRG00000008187)	UNC45A (ENSPPRG00000010555)	RCCD1 (ENSPPRG00000011903)	PRC1 (ENSPPRG00000013559)	VPS33B (ENSPPRG00000017429)	NGRN (ENSPPRG00000017958)	TTLL13 (ENSPPRG00000022377)	GDPGP1 (ENSPPRG00000020630)	CIB1 (ENSPPRG00000025089)	SEMA4B (ENSPPRG00000025080)	IDH2 (ENSPPRG00000024990) ##22	ZNF710 (ENSPPRG00000024979)	ARPIN (ENSPPRG00000024893)	AP3S2 (ENSPPRG00000024758)	ENSPPRG00000024635	ANPEP (ENSPPRG00000024242)	MESP2 (ENSPPRG00000024134)	MESP1 (ENSPPRG00000023802)	WDR93 (ENSPPRG00000022782)	PEX11A (ENSPPRG00000000265)	PLIN1 (ENSPPRG00000000477)	ENSPPRG00000020818	KIF7 (ENSPPRG00000001457)	TICRR (ENSPPRG00000004833)	RHCG (ENSPPRG00000006129)	POLG (ENSPPRG00000007408)
Tiger	MODERN SPECIES	112	IQGAP1 (ENSPTIG00000014210)	CRTC3 (ENSPTIG00000015609)	BLM (ENSPTIG00000016168)	ENSPTIG00000016594	FURIN (ENSPTIG00000016644)	FES (ENSPTIG00000017453)	MAN2A2 (ENSPTIG00000018511)	HDDC3 (ENSPTIG00000019000)	UNC45A (ENSPTIG00000019053)	PRC1 (ENSPTIG00000019480)	VPS33B (ENSPTIG00000019885)	NGRN (ENSPTIG00000000316)	TTLL13 (ENSPTIG00000001412)	CIB1 (ENSPTIG00000005450)	SEMA4B (ENSPTIG00000005682)	IDH2 (ENSPTIG00000006500) ##22	ZNF710 (ENSPTIG00000007643)	ENSPTIG00000007869	AP3S2 (ENSPTIG00000007965)	ANPEP (ENSPTIG00000008472)	ENSPTIG00000000413	WDR93 (ENSPTIG00000009032)	PEX11A (ENSPTIG00000010681)	ENSPTIG00000011083	ENSPTIG00000011088	TICRR (ENSPTIG00000011133)	RHCG (ENSPTIG00000012772)	POLG (ENSPTIG00000012981)	FANCI (ENSPTIG00000014324)	RLBP1 (ENSPTIG00000017254)	ABHD2 (ENSPTIG00000017354)
Cat	MODERN SPECIES	237	CRTC3 (ENSFCAG00000023085)	BLM (ENSFCAG00000006087)	FURIN (ENSFCAG00000006091)	FES (ENSFCAG00000006093)	MAN2A2 (ENSFCAG00000006094)	HDDC3 (ENSFCAG00000006096)	UNC45A (ENSFCAG00000006097)	RCCD1 (ENSFCAG00000006098)	PRC1 (ENSFCAG00000032022)	VPS33B (ENSFCAG00000011960)	NGRN (ENSFCAG00000031552)	TTLL13 (ENSFCAG00000005272)	GDPGP1 (ENSFCAG00000005271)	CIB1 (ENSFCAG00000022553)	SEMA4B (ENSFCAG00000022585)	IDH2 (ENSFCAG00000027219) ##22	ZNF710 (ENSFCAG00000005268)	ARPIN (ENSFCAG00000042625)	AP3S2 (ENSFCAG00000038931)	ANPEP (ENSFCAG00000008974)	MESP2 (ENSFCAG00000043356)	MESP1 (ENSFCAG00000008973)	WDR93 (ENSFCAG00000008972)	PEX11A (ENSFCAG00000044187)	PLIN1 (ENSFCAG00000042547)	KIF7 (ENSFCAG00000013350)	ENSFCAG00000033324	TICRR (ENSFCAG00000013349)	RHCG (ENSFCAG00000012890)	POLG (ENSFCAG00000012888)	FANCI (ENSFCAG00000012886)
Laurasiatheria_c	ANCESTRAL SPECIES	1	ENSGT00390000010652.C	ENSGT00940000156800	ENSGT00940000157220	ENSGT00940000158881	ENSGT01030000234638.b.b.c.a	ENSGT00390000011608	ENSGT00940000159320	ENSGT00940000162149	ENSGT00390000009453	ENSGT00940000156813	ENSGT00390000014472	ENSGT00940000161367	ENSGT00390000016718	ENSGT00940000158927	ENSGT00940000154870.D	ENSGT00390000012547.a ##22	ENSGT00940000161170	ENSGT00530000064251	ENSGT00970000193421.C.b.b	ENSGT00940000154876.b	ENSGT00530000063712.a.a.k	ENSGT00530000063712.a.a.l	ENSGT00390000009995	ENSGT00390000014273.a	ENSGT00950000182920.a	ENSGT00940000159749	ENSGT00520000059044	ENSGT00390000005222	ENSGT00950000182844.b.b.b	ENSGT00390000000453	ENSGT00390000005855
Chiroptera	ANCESTRAL SPECIES	43	ENSGT00390000010652.C	ENSGT00940000156800	ENSGT00940000157220	ENSGT00940000158881	ENSGT01030000234638.b.b.c.a	ENSGT00390000011608	ENSGT00940000159320	ENSGT00940000162149	ENSGT00390000009453	ENSGT00940000156813	ENSGT00390000014472	ENSGT00940000161367	ENSGT00390000016718	ENSGT00940000158927	ENSGT00940000154870.D	ENSGT00390000012547.a ##22	ENSGT00940000161170	ENSGT00530000064251	ENSGT00970000193421.C.b.b	ENSGT00940000154876.b	ENSGT00530000063712.a.a.k	ENSGT00530000063712.a.a.l	ENSGT00390000009995	ENSGT00390000014273.a	ENSGT00950000182920.a	ENSGT00940000159749	ENSGT00520000059044	ENSGT00390000005222	ENSGT00950000182844.b.b.b	ENSGT00390000000453	ENSGT00390000005855.d
Microchiroptera	ANCESTRAL SPECIES	42	ENSGT00950000183076.a.b.b.a.a	ENSGT00390000010652.C	ENSGT00940000156800	ENSGT00940000157220	ENSGT00940000158881	ENSGT01030000234638.b.b.c.a	ENSGT00390000011608	ENSGT00940000159320	ENSGT00390000009453	ENSGT00940000156813	ENSGT00390000014472	ENSGT00940000161367	ENSGT00390000016718	ENSGT00940000158927	ENSGT00940000154870.D	ENSGT00390000012547.a ##22	ENSGT00940000161170	ENSGT00530000064251	ENSGT00970000193421.C.b.b	ENSGT00940000154876.b	ENSGT00530000063712.a.a.k	ENSGT00530000063712.a.a.l	ENSGT00390000009995	ENSGT00390000014273.a	ENSGT00950000182920.a	ENSGT00940000159749	ENSGT00520000059044	ENSGT00390000005222	ENSGT00950000182844.b.b.b	ENSGT00390000000453	ENSGT00390000005855.d
Greater horseshoe bat	MODERN SPECIES	20	IQGAP1 (ENSRFEG00010020455)	CRTC3 (ENSRFEG00010020520)	BLM (ENSRFEG00010020582)	FURIN (ENSRFEG00010020655)	FES (ENSRFEG00010020782)	MAN2A2 (ENSRFEG00010021021)	HDDC3 (ENSRFEG00010021049)	UNC45A (ENSRFEG00010021076)	PRC1 (ENSRFEG00010021155)	VPS33B (ENSRFEG00010021175)	NGRN (ENSRFEG00010021219)	TTLL13 (ENSRFEG00010005939)	GDPGP1 (ENSRFEG00010006006)	CIB1 (ENSRFEG00010006042)	SEMA4B (ENSRFEG00010006103)	IDH2 (ENSRFEG00010006185) ##22	ZNF710 (ENSRFEG00010006256)	ARPIN (ENSRFEG00010006315)	ANPEP (ENSRFEG00010006504)	MESP2 (ENSRFEG00010006645)	MESP1 (ENSRFEG00010006682)	WDR93 (ENSRFEG00010006708)	PEX11A (ENSRFEG00010006769)	PLIN1 (ENSRFEG00010006827)	KIF7 (ENSRFEG00010006877)	ENSRFEG00010006917	TICRR (ENSRFEG00010006972)	RHCG (ENSRFEG00010007501)	POLG (ENSRFEG00010007606)	FANCI (ENSRFEG00010007715)	RLBP1 (ENSRFEG00010008473)
Microbat	MODERN SPECIES	2553																IDH2 (ENSMLUG00000016677) ##22	ZNF710 (ENSMLUG00000002963)
Megabat	MODERN SPECIES	2740										VPS33B (ENSPVAG00000011811)	NGRN (ENSPVAG00000011813)	TTLL13 (ENSPVAG00000011814)	GDPGP1 (ENSPVAG00000011816)	CIB1 (ENSPVAG00000011817)	SEMA4B (ENSPVAG00000011819)	IDH2 (ENSPVAG00000011823) ##22	ZNF710 (ENSPVAG00000011824)
Equus	ANCESTRAL SPECIES	4	ENSGT00390000010652.C	ENSGT00940000156800	ENSGT00940000157220	ENSGT00940000158881	ENSGT01030000234638.b.b.c.a	ENSGT00390000011608	ENSGT00940000159320	ENSGT00940000162149	ENSGT00390000009453	ENSGT00940000156813	ENSGT00390000014472	ENSGT00940000161367	ENSGT00390000016718	ENSGT00940000158927	ENSGT00940000154870.D	ENSGT00390000012547.a ##22	ENSGT00940000161170	ENSGT00530000064251	ENSGT00970000193421.C.b.b	ENSGT00950000184993	ENSGT00940000154876.b.l	ENSGT00530000063712.a.a.k	ENSGT00940000154876.b.k	ENSGT00970000193421.C.b.a	ENSGT00530000063712.a.a.l	ENSGT00390000009995	ENSGT00390000014273.a	ENSGT00950000182920.a	ENSGT00520000059044	ENSGT00940000159749	ENSGT00390000005222
Horse	MODERN SPECIES		CRTC3 (ENSECAG00000024475)	ENSECAG00000028298	BLM (ENSECAG00000011405)	FURIN (ENSECAG00000019913)	FES (ENSECAG00000000836)	MAN2A2 (ENSECAG00000018866)	HDDC3 (ENSECAG00000017200)	UNC45A (ENSECAG00000018965)	RCCD1 (ENSECAG00000017879)	PRC1 (ENSECAG00000017906)	VPS33B (ENSECAG00000025016)	TTLL13 (ENSECAG00000013527)	GDPGP1 (ENSECAG00000004439)	CIB1 (ENSECAG00000018203)	SEMA4B (ENSECAG00000022668)	IDH2 (ENSECAG00000007105) ##22	ZNF710 (ENSECAG00000023093)	ARPIN (ENSECAG00000023388)	AP3S2 (ENSECAG00000024044)	ENSECAG00000034460	ENSECAG00000028467	ENSECAG00000036248	ENSECAG00000037098	ENSECAG00000047741	ENSECAG00000029256	MESP1 (ENSECAG00000039551)	WDR93 (ENSECAG00000004446)	PEX11A (ENSECAG00000010027)	PLIN1 (ENSECAG00000013202)	KIF7 (ENSECAG00000019462)	ENSECAG00000019184
Donkey	MODERN SPECIES	11	ENSEASG00005028389	BLM (ENSEASG00005006727)	FURIN (ENSEASG00005006710)	FES (ENSEASG00005006705)	MAN2A2 (ENSEASG00005006699)	HDDC3 (ENSEASG00005006697)	UNC45A (ENSEASG00005006694)	RCCD1 (ENSEASG00005006692)	PRC1 (ENSEASG00005006516)	ENSEASG00005006502	ENSEASG00005027932	TTLL13 (ENSEASG00005006495)	GDPGP1 (ENSEASG00005035001)	CIB1 (ENSEASG00005006488)	SEMA4B (ENSEASG00005006485)	IDH2 (ENSEASG00005006481) ##22	ZNF710 (ENSEASG00005006478)	ARPIN (ENSEASG00005006475)	AP3S2 (ENSEASG00005006473)	ENSEASG00005034086	ENSEASG00005038359	MESP2 (ENSEASG00005029954)	ENSEASG00005015128	ENSEASG00005032063	MESP1 (ENSEASG00005026694)	WDR93 (ENSEASG00005015162)	PEX11A (ENSEASG00005029106)	PLIN1 (ENSEASG00005036082)	ENSEASG00005015200	ENSEASG00005015180	RHCG (ENSEASG00005015218)
Eulipotyphla	ANCESTRAL SPECIES																	ENSGT00390000012547.a ##22
Hedgehog	MODERN SPECIES	7407																IDH2 (ENSEEUG00000008959) ##22
Atlantogenata	ANCESTRAL SPECIES	2	ENSGT00390000010652.C	ENSGT00940000156800	ENSGT00940000157220	ENSGT00940000158881	ENSGT01030000234638.b.b.c.a	ENSGT00390000011608	ENSGT00940000159320	ENSGT00940000162149	ENSGT00390000009453	ENSGT00940000156813	ENSGT00390000014472	ENSGT00940000161367	ENSGT00390000016718	ENSGT00940000158927	ENSGT00940000154870.D	ENSGT00390000012547.a ##22	ENSGT00940000161170	ENSGT00530000064251	ENSGT00970000193421.C.b	ENSGT00940000154876.b	ENSGT00530000063712.a.a.l	ENSGT00390000009995	ENSGT00390000014273.a	ENSGT00950000182920.a	ENSGT00940000159749	ENSGT00390000005222	ENSGT00950000182844.b.b.b	ENSGT00390000000453	ENSGT00390000005855	ENSGT00940000160026	ENSGT00950000182902.b.a
Xenarthra	ANCESTRAL SPECIES	560												ENSGT00940000161367	ENSGT00390000016718	ENSGT00940000158927	ENSGT00940000154870.D	ENSGT00390000012547.a ##22	ENSGT00940000161170	ENSGT00530000064251	ENSGT00940000154876.b	ENSGT00530000063712.a.a.k
Armadillo	MODERN SPECIES	2580												TTLL13 (ENSDNOG00000012945)	GDPGP1 (ENSDNOG00000008662)	CIB1 (ENSDNOG00000046074)	SEMA4B (ENSDNOG00000017311)	IDH2 (ENSDNOG00000004692) ##22	ZNF710 (ENSDNOG00000048028)	ENSDNOG00000009954	ANPEP (ENSDNOG00000040528)	MESP2 (ENSDNOG00000037045)
Sloth	MODERN SPECIES	6542																IDH2 (ENSCHOG00000001088) ##22
Afrotheria	ANCESTRAL SPECIES	20	ENSGT00950000183076.a.b.b.a.a	ENSGT00390000010652.C	ENSGT00940000157220	ENSGT00940000158881	ENSGT01030000234638.b.b.c.a	ENSGT00390000011608	ENSGT00940000159320	ENSGT00940000162149	ENSGT00390000009453	ENSGT00940000156813	ENSGT00390000014472	ENSGT00940000161367	ENSGT00390000016718	ENSGT00940000158927	ENSGT00940000154870.D	ENSGT00390000012547.a ##22	ENSGT00940000161170	ENSGT00530000064251	ENSGT00970000193421.C.b	ENSGT00940000154876.b	ENSGT00530000063712.a.a.l	ENSGT00390000009995	ENSGT00390000014273.a	ENSGT00950000182920.a	ENSGT00940000159749	ENSGT00390000005222	ENSGT00950000182844.b.b.b	ENSGT00390000000453	ENSGT00390000005855	ENSGT00940000160026	ENSGT00950000182902.b.a
Tenrec	MODERN SPECIES	7271																IDH2 (ENSETEG00000009862) ##22
Afrotheria_a	ANCESTRAL SPECIES	19	ENSGT00950000183076.a.b.b.a.a	ENSGT00390000010652.C	ENSGT00940000157220	ENSGT00940000158881	ENSGT01030000234638.b.b.c.a	ENSGT00390000011608	ENSGT00940000159320	ENSGT00940000162149	ENSGT00390000009453	ENSGT00940000156813	ENSGT00390000014472	ENSGT00940000161367	ENSGT00390000016718	ENSGT00940000158927	ENSGT00940000154870.D	ENSGT00390000012547.a ##22	ENSGT00940000161170	ENSGT00530000064251	ENSGT00970000193421.C.b	ENSGT00940000154876.b	ENSGT00530000063712.a.a.l	ENSGT00390000009995	ENSGT00390000014273.a	ENSGT00950000182920.a	ENSGT00940000159749	ENSGT00390000005222	ENSGT00950000182844.b.b.b	ENSGT00390000000453	ENSGT00390000005855	ENSGT00940000160026	ENSGT00950000182902.b.a
Hyrax	MODERN SPECIES	3015																IDH2 (ENSPCAG00000007364) ##22	ZNF710 (ENSPCAG00000007305)
Elephant	MODERN SPECIES	285	CRTC3 (ENSLAFG00000001143)	ENSLAFG00000009335	FURIN (ENSLAFG00000003407)	FES (ENSLAFG00000005977)	MAN2A2 (ENSLAFG00000007107)	HDDC3 (ENSLAFG00000007114)	UNC45A (ENSLAFG00000007118)	RCCD1 (ENSLAFG00000007122)	PRC1 (ENSLAFG00000013123)	VPS33B (ENSLAFG00000010644)	NGRN (ENSLAFG00000020610)	TTLL13 (ENSLAFG00000005024)	GDPGP1 (ENSLAFG00000022790)	CIB1 (ENSLAFG00000025868)	SEMA4B (ENSLAFG00000005020)	IDH2 (ENSLAFG00000010171) ##22	ZNF710 (ENSLAFG00000010169)	ARPIN (ENSLAFG00000010996)	AP3S2 (ENSLAFG00000020799)	ANPEP (ENSLAFG00000010600)	ENSLAFG00000021758	MESP1 (ENSLAFG00000022195)	WDR93 (ENSLAFG00000003753)	PEX11A (ENSLAFG00000000556)	PLIN1 (ENSLAFG00000006093)	KIF7 (ENSLAFG00000006086)	TICRR (ENSLAFG00000006079)	RHCG (ENSLAFG00000015094)	POLG (ENSLAFG00000010216)	FANCI (ENSLAFG00000016287)	RLBP1 (ENSLAFG00000016281)
Marsupialia	ANCESTRAL SPECIES		ENSGT00940000156800	ENSGT00940000157220	ENSGT00940000158881	ENSGT01030000234638.b.b.c.a	ENSGT00390000009453.e.a	ENSGT00940000159320	ENSGT00940000162149	ENSGT00390000009453.f	ENSGT00940000156813	ENSGT00390000011608	ENSGT00390000014472	ENSGT00940000161367	ENSGT00390000016718	ENSGT00940000158927	ENSGT00940000154870.D	ENSGT00390000012547.a ##22	ENSGT00940000161170	ENSGT00530000064251	ENSGT00970000193421.C.b	ENSGT00940000154876.b	ENSGT00530000063712.a.a.j	ENSGT00530000063712.a.a.i	ENSGT00390000009995	ENSGT00390000014273.a	ENSGT00950000182920.a	ENSGT00940000164158.B	ENSGT00940000159749	ENSGT00390000005222	ENSGT00950000182844.b.b.b	ENSGT00390000000453	ENSGT00390000005855
Marsupialia_b	ANCESTRAL SPECIES		ENSGT00940000156800	ENSGT00940000157220	ENSGT00940000158881	ENSGT01030000234638.b.b.c.a	ENSGT00390000009453.e.a	ENSGT00940000159320	ENSGT00940000162149	ENSGT00390000009453.f	ENSGT00940000156813	ENSGT00390000011608	ENSGT00390000014472	ENSGT00940000161367	ENSGT00390000016718	ENSGT00940000158927	ENSGT00940000154870.D	ENSGT00390000012547.a ##22	ENSGT00940000161170	ENSGT00530000064251	ENSGT00970000193421.C.b	ENSGT00940000154876.b	ENSGT00530000063712.a.a.j	ENSGT00530000063712.a.a.i	ENSGT00390000009995	ENSGT00390000014273.a	ENSGT00950000182920.a	ENSGT00940000164158.B	ENSGT00940000159749	ENSGT00390000005222	ENSGT00950000182844.b.b.b	ENSGT00390000000453	ENSGT00390000005855
Diprotodontia	ANCESTRAL SPECIES		ENSGT00940000156800	ENSGT00940000157220	ENSGT00940000158881	ENSGT01030000234638.b.b.c.a	ENSGT00390000009453.e.a	ENSGT00940000159320	ENSGT00940000162149	ENSGT00390000009453.f	ENSGT00940000156813	ENSGT00390000011608	ENSGT00390000014472	ENSGT00940000161367	ENSGT00390000016718	ENSGT00940000158927	ENSGT00940000154870.D	ENSGT00390000012547.a ##22	ENSGT00940000161170	ENSGT00530000064251	ENSGT00940000154876.b	ENSGT00530000063712.a.a.j	ENSGT00530000063712.a.a.i	ENSGT00390000009995	ENSGT00390000014273.a	ENSGT00950000182920.a	ENSGT00940000164158.B	ENSGT00940000159749	ENSGT00390000005222	ENSGT00950000182844.b.b.b	ENSGT00390000000453	ENSGT00390000005855	ENSGT00940000160026
Diprotodontia_a	ANCESTRAL SPECIES	1	ENSGT00940000156800	ENSGT00940000157220	ENSGT00940000158881	ENSGT01030000234638.b.b.c.a	ENSGT00390000009453.e.a	ENSGT00940000159320	ENSGT00940000162149	ENSGT00390000009453.f	ENSGT00940000156813	ENSGT00390000011608	ENSGT00390000014472	ENSGT00940000161367	ENSGT00390000016718	ENSGT00940000158927	ENSGT00940000154870.D	ENSGT00390000012547.a ##22	ENSGT00940000161170	ENSGT00530000064251	ENSGT00940000154876.b	ENSGT00530000063712.a.a.j	ENSGT00530000063712.a.a.i	ENSGT00390000009995	ENSGT00390000014273.a	ENSGT00950000182920.a	ENSGT00940000164158.B	ENSGT00940000159749	ENSGT00390000005222	ENSGT00950000182844.b.b.b	ENSGT00390000000453	ENSGT00390000005855	ENSGT00940000160026
Common wonbat	MODERN SPECIES	581	BLM (ENSVURG00010006529)	FURIN (ENSVURG00010006546)	FES (ENSVURG00010006572)	MAN2A2 (ENSVURG00010006740)	ENSVURG00010006788	UNC45A (ENSVURG00010006822)	RCCD1 (ENSVURG00010006842)	ENSVURG00010006860	VPS33B (ENSVURG00010006900)	ENSVURG00010006935	NGRN (ENSVURG00010006964)	TTLL13 (ENSVURG00010006972)	GDPGP1 (ENSVURG00010006996)	CIB1 (ENSVURG00010006999)	SEMA4B (ENSVURG00010007007)	IDH2 (ENSVURG00010007032) ##22	ZNF710 (ENSVURG00010007056)	ENSVURG00010007066	ANPEP (ENSVURG00010007116)	ENSVURG00010007129	ENSVURG00010007133	ENSVURG00010007137	PEX11A (ENSVURG00010007145)	PLIN1 (ENSVURG00010007156)	ENSVURG00010007177	KIF7 (ENSVURG00010007190)	ENSVURG00010007210	RHCG (ENSVURG00010007220)	POLG (ENSVURG00010007251)	FANCI (ENSVURG00010007280)	RLBP1 (ENSVURG00010007367)
koala	MODERN SPECIES	6	CTSH (ENSPCIG00000006615)	BLM (ENSPCIG00000006609)	FURIN (ENSPCIG00000006602)	FES (ENSPCIG00000006595)	MAN2A2 (ENSPCIG00000006586)	ENSPCIG00000006578	UNC45A (ENSPCIG00000006575)	RCCD1 (ENSPCIG00000006571)	ENSPCIG00000006566	VPS33B (ENSPCIG00000006563)	ENSPCIG00000006534	TTLL13 (ENSPCIG00000006528)	GDPGP1 (ENSPCIG00000006527)	CIB1 (ENSPCIG00000006525)	SEMA4B (ENSPCIG00000006519)	IDH2 (ENSPCIG00000006512) ##22	ZNF710 (ENSPCIG00000006509)	ENSPCIG00000006508	ANPEP (ENSPCIG00000006505)	ENSPCIG00000006504	ENSPCIG00000006503	ENSPCIG00000006497	PEX11A (ENSPCIG00000006492)	ENSPCIG00000006489	KIF7 (ENSPCIG00000006481)	TICRR (ENSPCIG00000006468)	RHCG (ENSPCIG00000006461)	POLG (ENSPCIG00000006439)	FANCI (ENSPCIG00000006421)	RLBP1 (ENSPCIG00000006417)	ABHD2 (ENSPCIG00000009069)
Wallaby	MODERN SPECIES	11092																IDH2 (ENSMEUG00000009797) ##22
Tasmanian devil	MODERN SPECIES	1	MINAR1 (ENSSHAG00000001271)	TMED3 (ENSSHAG00000022806)	ENSSHAG00000024213	ENSSHAG00000000683	ENSSHAG00000032156	ENSSHAG00000007988	ENSSHAG00000030066	MAN2A2 (ENSSHAG00000009713)	ENSSHAG00000009935	UNC45A (ENSSHAG00000010200)	RCCD1 (ENSSHAG00000010570)	ENSSHAG00000010615	ENSSHAG00000032047	CIB1 (ENSSHAG00000011127)	SEMA4B (ENSSHAG00000011146)	IDH2 (ENSSHAG00000011631) ##22	ZNF710 (ENSSHAG00000024570)	ENSSHAG00000031900	ENSSHAG00000028069	ANPEP (ENSSHAG00000013070)	ENSSHAG00000013251	ENSSHAG00000013698	PLIN1 (ENSSHAG00000013876)	KIF7 (ENSSHAG00000013999)	TICRR (ENSSHAG00000014111)	RHCG (ENSSHAG00000014529)	POLG (ENSSHAG00000015373)	FANCI (ENSSHAG00000015462)	RLBP1 (ENSSHAG00000028097)	ABHD2 (ENSSHAG00000015772)	ENSSHAG00000016335
Opossum	MODERN SPECIES		TMED3 (ENSMODG00000019434)	RASGRF1 (ENSMODG00000019438)	CTSH (ENSMODG00000019444)	BLM (ENSMODG00000019449)	FURIN (ENSMODG00000019452)	FES (ENSMODG00000019456)	MAN2A2 (ENSMODG00000019461)	ENSMODG00000019476	UNC45A (ENSMODG00000019488)	ENSMODG00000019495	VPS33B (ENSMODG00000019498)	TTLL13 (ENSMODG00000019503)	GDPGP1 (ENSMODG00000019506)	CIB1 (ENSMODG00000019510)	SEMA4B (ENSMODG00000019513)	IDH2 (ENSMODG00000019516) ##22	ZNF710 (ENSMODG00000019518)	ARPIN (ENSMODG00000019519)	AP3S2 (ENSMODG00000042381)	ANPEP (ENSMODG00000019534)	ENSMODG00000024701	ENSMODG00000019538	ENSMODG00000019542	PEX11A (ENSMODG00000038591)	PLIN1 (ENSMODG00000019544)	KIF7 (ENSMODG00000019548)	ENSMODG00000024697	RHCG (ENSMODG00000019555)	POLG (ENSMODG00000019564)	FANCI (ENSMODG00000019568)	RLBP1 (ENSMODG00000019571)
Anura	ANCESTRAL SPECIES		ENSGT00390000008502	ENSGT00690000102225	ENSGT00940000157220	ENSGT00940000158881	ENSGT01030000234638.b.b.c.a	ENSGT00950000185474	ENSGT00940000159320	ENSGT00390000009453	ENSGT00940000156813	ENSGT00390000011608	ENSGT00390000014472	ENSGT00940000161367	ENSGT00390000016718	ENSGT00940000158927	ENSGT00940000154870.D	ENSGT00390000012547.a ##22	ENSGT00940000161170	ENSGT00530000064251	ENSGT00970000193421.C.b	ENSGT00940000154876.b	ENSGT00390000018488	ENSGT00910000144335	ENSGT00390000000993	ENSGT00940000153636.a	ENSGT00940000159424	ENSGT00940000158198	ENSGT00530000063712.a.a.b	ENSGT00530000063712.a.a.a.b	ENSGT00530000063712.a.a.a.a	ENSGT01050000244841.A.a.b	ENSGT00390000009995.x
Frog	MODERN SPECIES	3	mfap1 (ENSXETG00000015470)	rpl37a (ENSXETG00000015468)	furin (ENSXETG00000015462)	fes (ENSXETG00000015460)	man2a2 (ENSXETG00000015458)	ENSXETG00000044928	unc45a (ENSXETG00000015452)	rccd1 (ENSXETG00000049099)	prc1 (ENSXETG00000015449)	vps33b (ENSXETG00000015443)	ttll13p (ENSXETG00000041103)	gdpgp1 (ENSXETG00000012962)	cib1 (ENSXETG00000012964)	sema4b (ENSXETG00000012967)	ENSXETG00000043241	idh2 (ENSXETG00000027622) ##22	znf710 (ENSXETG00000012971)	arpin (ENSXETG00000012972)	ap3s2 (ENSXETG00000043330)	anpep (ENSXETG00000012973)	cfap161 (ENSXETG00000012978)	tlnrd1 (ENSXETG00000012979)	mesd (ENSXETG00000012980)	cemip (ENSXETG00000012981)	abhd17c (ENSXETG00000027627)	arnt2 (ENSXETG00000012988)	mespb (ENSXETG00000027628)	ENSXETG00000040888	mespa (ENSXETG00000017725)	gnrhr2 (ENSXETG00000017726)	ENSXETG00000030224
Leishan spiny toad	MODERN SPECIES	6	MAN2A2 (ENSLLEG00000004530)	ENSLLEG00000004550	UNC45A (ENSLLEG00000004560)	ENSLLEG00000004584	ENSLLEG00000004588	PRC1 (ENSLLEG00000004608)	VPS33B (ENSLLEG00000004638)	HDDC3 (ENSLLEG00000004660)	NGRN (ENSLLEG00000004673)	TTLL13 (ENSLLEG00000004686)	CIB1 (ENSLLEG00000004720)	SEMA4B (ENSLLEG00000004735)	ENSLLEG00000004775	ENSLLEG00000004779	ENSLLEG00000004785	IDH2 (ENSLLEG00000004824) ##22	ZNF710 (ENSLLEG00000004880)	ARPIN (ENSLLEG00000004890)	ENSLLEG00000004915	ENSLLEG00000005020	ENSLLEG00000005051	ENSLLEG00000005183	CFAP161 (ENSLLEG00000005379)	ENSLLEG00000005454	ENSLLEG00000005503	ENSLLEG00000005522	ENSLLEG00000005602	ENSLLEG00000005613	CEMIP (ENSLLEG00000005633)	ENSLLEG00000005803	ABHD17C (ENSLLEG00000006101)
Cyclostomata	ANCESTRAL SPECIES																	ENSGT00390000012547.a ##22
Hagfish	MODERN SPECIES	42									ENSEBUG00000016897	cct3 (ENSEBUG00000003432)	ENSEBUG00000016916	ENSEBUG00000006704	ENSEBUG00000008678	ENSEBUG00000004962	ENSEBUG00000012463	idh2 (ENSEBUG00000013895) ##22	ENSEBUG00000001457	ENSEBUG00000008986	MRPS11 (ENSEBUG00000010376)	det1 (ENSEBUG00000001348)	ENSEBUG00000013609	ENSEBUG00000014866	ENSEBUG00000006536	ENSEBUG00000004826	ENSEBUG00000004527	ENSEBUG00000010112	syt11b (ENSEBUG00000000978)	ENSEBUG00000008971	ENSEBUG00000007013	ENSEBUG00000002169	ENSEBUG00000012813
Ciona	ANCESTRAL SPECIES																	ENSGT00390000012547.a ##22
Ciona savignyi	MODERN SPECIES	70	ENSCSAVG00000005414	ENSCSAVG00000005393	ENSCSAVG00000005386	ENSCSAVG00000005382	ENSCSAVG00000005356	ENSCSAVG00000005353	ENSCSAVG00000005348	ENSCSAVG00000005345	ENSCSAVG00000005340	ENSCSAVG00000005125	ENSCSAVG00000005112	ENSCSAVG00000004892	ENSCSAVG00000003848	ENSCSAVG00000003839	ENSCSAVG00000003834	ENSCSAVG00000003623 ##22	ENSCSAVG00000003618	ENSCSAVG00000003576	ENSCSAVG00000003570	ENSCSAVG00000003567	ENSCSAVG00000003562	ENSCSAVG00000003557
Ciona intestinalis	MODERN SPECIES	182	ENSCING00000019309	ENSCING00000009817	ENSCING00000013414	ENSCING00000008681	ENSCING00000013413	ENSCING00000018963	ENSCING00000008678	ENSCING00000008677	ENSCING00000020823	ENSCING00000008676	ENSCING00000013412	ENSCING00000008675	ENSCING00000008674	ENSCING00000008673	ENSCING00000018469	ENSCING00000008658 ##22	ENSCING00000013411	ENSCING00000013409	ENSCING00000023741	ENSCING00000018285	ENSCING00000024317	ENSCING00000008650	ENSCING00000023276	ENSCING00000024049	ENSCING00000019205	ENSCING00000019489	ENSCING00000008655	ENSCING00000025152	ENSCING00000021750	ENSCING00000013407	ENSCING00000008649
Ecdysozoa	ANCESTRAL SPECIES																	ENSGT00390000012547.a ##22
Caenorhabditis elegans	MODERN SPECIES	6	R08B4.3 (WBGene00011139)	alr-1 (WBGene00044330)	C05C9.3 (WBGene00007327)	C05C9.2 (WBGene00007326)	C05C9.1 (WBGene00007325)	F13D2.1 (WBGene00008735)	gnrr-6 (WBGene00008736)	gnrr-7 (WBGene00008737)	C34F6.1 (WBGene00007938)	col-178 (WBGene00000751)	col-179 (WBGene00000752)	C34F6.11 (WBGene00007945)	hst-2 (WBGene00002029)	C34F6.5 (WBGene00007939)	C34F6.7 (WBGene00007941)	idh-2 (WBGene00007942) ##22	C34F6.9 (WBGene00007943)	C34F6.12 (WBGene00195211)	C34F6.10 (WBGene00007944)	C03A3.1 (WBGene00007266)	C03A3.2 (WBGene00007267)	C03A3.9 (WBGene00284849)	C03A3.3 (WBGene00007268)	ifa-1 (WBGene00002050)	F38B2.2 (WBGene00009529)	F38B2.6 (WBGene00194663)	F38B2.3 (WBGene00009530)	F38B2.4 (WBGene00009531)	inx-2 (WBGene00002124)	snrp-40.1 (WBGene00008586)	F08G12.3 (WBGene00008587)