Chordata	ANCESTRAL SPECIES																	ENSGT01030000234543.F #22
Vertebrata	ANCESTRAL SPECIES																	ENSGT01030000234543.F #22
Gnathostomata	ANCESTRAL SPECIES	559																ENSGT01030000234543.F #22	ENSGT00450000040303 #23	ENSGT00390000006307	ENSGT00940000164265.C	ENSGT00950000182910.a.b	ENSGT00940000160714
Euteleostomi	ANCESTRAL SPECIES	395												ENSGT00940000163607	ENSGT00940000157173	ENSGT00940000155783	ENSGT00390000000916	ENSGT01030000234543.F #22	ENSGT00450000040303 #23	ENSGT00390000006307	ENSGT00940000164265.C	ENSGT00950000182910.a.b	ENSGT00940000160714
Sarcopterygii	ANCESTRAL SPECIES	476												ENSGT00940000163607	ENSGT00940000157173	ENSGT00940000155783	ENSGT00390000000916	ENSGT01030000234543.F #22	ENSGT00450000040303 #23	ENSGT00390000006307
Tetrapoda	ANCESTRAL SPECIES	121									ENSGT00390000017728	ENSGT00940000160982	ENSGT00940000157664	ENSGT00940000163607	ENSGT00940000157173	ENSGT00940000155783	ENSGT00390000000916	ENSGT01030000234543.F #22	ENSGT00450000040303 #23	ENSGT00940000160714	ENSGT00950000182910.a.b	ENSGT00940000164265.C	ENSGT00550000074817	ENSGT00450000040296	ENSGT00390000012151	ENSGT00940000162768.A	ENSGT00940000157051	ENSGT00940000157888 #17	ENSGT00940000158331 #19	ENSGT00940000159043 #20	ENSGT00390000001667 #21	ENSGT00390000014303	ENSGT00940000154732
Amniota	ANCESTRAL SPECIES	88														ENSGT00940000155783	ENSGT00390000000916	ENSGT01030000234543.F #22	ENSGT00450000040303 #23	ENSGT00940000160714	ENSGT00950000182910.a.b	ENSGT00940000164265.C	ENSGT00550000074817	ENSGT00450000040296	ENSGT00390000012151	ENSGT00940000162768.A	ENSGT00940000157051	ENSGT00940000157888 #17	ENSGT00940000158331 #19	ENSGT00940000159043 #20	ENSGT00390000001667 #21	ENSGT00390000014303	ENSGT00940000154732
Mammalia	ANCESTRAL SPECIES	125							ENSGT00940000157051	ENSGT00940000157888 #17	ENSGT00940000158331 #19	ENSGT00940000159043 #20	ENSGT00390000001667 #21	ENSGT00390000014303	ENSGT00940000154732	ENSGT00390000013383	ENSGT00950000183094.b.b	ENSGT01030000234543.F #22	ENSGT00450000040303 #23	ENSGT00940000160714	ENSGT00950000182910.a.b	ENSGT00940000164265.C
Theria	ANCESTRAL SPECIES	67												ENSGT00940000157888 #17	ENSGT00940000158331 #19	ENSGT00940000159043 #20	ENSGT00390000001667 #21	ENSGT01030000234543.F #22	ENSGT00450000040303 #23	ENSGT00390000013344 #24	ENSGT00940000162158 #25	ENSGT00940000162582 #26	ENSGT00390000007901	ENSGT00950000182992.a.a	ENSGT00940000157688	ENSGT00930000151031	ENSGT01000000214440.A.b	ENSGT00950000183038.a.b.b.a	ENSGT00390000003561	ENSGT00550000075033	ENSGT00940000156394	ENSGT00940000158302.e	ENSGT00940000157173
Eutheria	ANCESTRAL SPECIES	7	ENSGT00940000154740.a.a.c.a	ENSGT00940000153612.A	ENSGT01040000240406.A.b.b	ENSGT01050000244941.A #8	ENSGT00940000158226 #9	ENSGT00940000156061 #10	ENSGT00940000162445	ENSGT00940000154259 #13	ENSGT00390000005322 #14	ENSGT00930000151059 #15	ENSGT00940000161837 #16	ENSGT00940000157888 #17	ENSGT00940000158331 #19	ENSGT00940000159043 #20	ENSGT00390000001667 #21	ENSGT01030000234543.F #22	ENSGT00450000040303 #23	ENSGT00390000013344 #24	ENSGT00940000162158 #25	ENSGT00940000162582 #26	ENSGT00940000156229 #27	ENSGT00390000012078.b #28	ENSGT00940000156411 #29	ENSGT00390000018845.e #30	ENSGT00940000160867 #31	ENSGT00390000014471 #32	ENSGT00940000157979 #33	ENSGT00940000157174 #34	ENSGT00940000154658.b #35	ENSGT00950000183018.b.k.a #37	ENSGT01040000240406.A.b.a.b
Boreoeutheria	ANCESTRAL SPECIES	10	ENSGT00940000162615	ENSGT00940000153612.A	ENSGT01040000240406.A.b.b	ENSGT01050000244941.A #8	ENSGT00940000158226 #9	ENSGT00940000156061 #10	ENSGT00940000162445	ENSGT00940000154259.l #13	ENSGT00390000005322 #14	ENSGT00930000151059 #15	ENSGT00940000161837 #16	ENSGT00940000157888 #17	ENSGT00940000158331 #19	ENSGT00940000159043 #20	ENSGT00390000001667 #21	ENSGT01030000234543.F #22	ENSGT00450000040303 #23	ENSGT00390000013344 #24	ENSGT00940000162158 #25	ENSGT00940000162582 #26	ENSGT00940000156229 #27	ENSGT00390000012078.b #28	ENSGT00940000156411 #29	ENSGT00390000018845.e #30	ENSGT00940000160867 #31	ENSGT00390000014471 #32	ENSGT00940000157979 #33	ENSGT00940000157174 #34	ENSGT00940000154658.b #35	ENSGT00950000183018.b.k.b ##37	ENSGT00950000183018.b.k.a #37
Euarchontoglires	ANCESTRAL SPECIES	10	ENSGT00940000162615	ENSGT00940000153612.A	ENSGT01040000240406.A.b.b	ENSGT01050000244941.A #8	ENSGT00940000158226 #9	ENSGT00940000156061 #10	ENSGT00940000162445	ENSGT00940000154259.l #13	ENSGT00390000005322 #14	ENSGT00930000151059 #15	ENSGT00940000161837 #16	ENSGT00940000157888 #17	ENSGT00940000158331 #19	ENSGT00940000159043 #20	ENSGT00390000001667 #21	ENSGT01030000234543.F #22	ENSGT00450000040303 #23	ENSGT00390000013344 #24	ENSGT00940000162158 #25	ENSGT00940000162582 #26	ENSGT00940000156229 #27	ENSGT00390000012078.b #28	ENSGT00940000156411 #29	ENSGT00390000018845.e #30	ENSGT00940000160867 #31	ENSGT00390000014471 #32	ENSGT00940000157979 #33	ENSGT00940000157174 #34	ENSGT00940000154658.b #35	ENSGT00950000183018.b.k.b ##37	ENSGT00950000183018.b.k.a #37
Euarchontoglires_A	ANCESTRAL SPECIES	10	ENSGT00940000162615	ENSGT00940000153612.A	ENSGT01040000240406.A.b.b	ENSGT01050000244941.A #8	ENSGT00940000158226 #9	ENSGT00940000156061 #10	ENSGT00940000162445	ENSGT00940000154259.l #13	ENSGT00390000005322 #14	ENSGT00930000151059 #15	ENSGT00940000161837 #16	ENSGT00940000157888 #17	ENSGT00940000158331 #19	ENSGT00940000159043 #20	ENSGT00390000001667 #21	ENSGT01030000234543.F #22	ENSGT00450000040303 #23	ENSGT00390000013344 #24	ENSGT00940000162158 #25	ENSGT00940000162582 #26	ENSGT00940000156229 #27	ENSGT00390000012078.b #28	ENSGT00940000156411 #29	ENSGT00390000018845.e #30	ENSGT00940000160867 #31	ENSGT00390000014471 #32	ENSGT00940000157979 #33	ENSGT00940000157174 #34	ENSGT00940000154658.b #35	ENSGT00950000183018.b.k.a #37	ENSGT01040000240406.A.b.a.b
Glires	ANCESTRAL SPECIES	9	ENSGT00940000162615	ENSGT00940000153612.A	ENSGT01040000240406.A.b.b	ENSGT01050000244941.A #8	ENSGT00940000158226 #9	ENSGT00940000156061 #10	ENSGT00940000162445	ENSGT00940000154259.l #13	ENSGT00390000005322 #14	ENSGT00930000151059 #15	ENSGT00940000161837 #16	ENSGT00940000157888 #17	ENSGT00940000158331 #19	ENSGT00940000159043 #20	ENSGT00390000001667 #21	ENSGT01030000234543.F #22	ENSGT00450000040303 #23	ENSGT00390000013344 #24	ENSGT00940000162158 #25	ENSGT00940000162582 #26	ENSGT00940000156229 #27	ENSGT00390000012078.b #28	ENSGT00940000156411 #29	ENSGT00390000018845.e #30	ENSGT00940000160867 #31	ENSGT00390000014471 #32	ENSGT00940000157979 #33	ENSGT00940000157174 #34	ENSGT00940000154658.b #35	ENSGT00950000183018.b.k.a #37	ENSGT01040000240406.A.b.a.b
Rodentia	ANCESTRAL SPECIES	9	ENSGT00940000162615	ENSGT00940000153612.A	ENSGT01040000240406.A.b.b	ENSGT01050000244941.A #8	ENSGT00940000158226 #9	ENSGT00940000156061 #10	ENSGT00940000162445	ENSGT00940000154259.l #13	ENSGT00390000005322 #14	ENSGT00930000151059 #15	ENSGT00940000161837 #16	ENSGT00940000157888 #17	ENSGT00940000158331 #19	ENSGT00940000159043 #20	ENSGT00390000001667 #21	ENSGT01030000234543.F #22	ENSGT00450000040303 #23	ENSGT00390000013344 #24	ENSGT00940000162158 #25	ENSGT00940000162582 #26	ENSGT00860000135614	ENSGT00940000156229 #27	ENSGT00390000012078.b #28	ENSGT00940000156411 #29	ENSGT00390000018845.e #30	ENSGT00940000160867 #31	ENSGT00390000014471 #32	ENSGT00940000157979 #33	ENSGT00940000157174 #34	ENSGT00940000154658.b #35	ENSGT00950000183018.b.k.a #37
Rodentia_A	ANCESTRAL SPECIES	11	ENSGT00940000162615	ENSGT00940000153612.A	ENSGT01040000240406.A.b.b	ENSGT01050000244941.A #8	ENSGT00940000158226 #9	ENSGT00940000156061 #10	ENSGT00940000162445	ENSGT00940000154259.l #13	ENSGT00390000005322 #14	ENSGT00930000151059 #15	ENSGT00940000161837 #16	ENSGT00940000157888 #17	ENSGT00940000158331 #19	ENSGT00940000159043 #20	ENSGT00390000001667 #21	ENSGT01030000234543.F #22	ENSGT00450000040303 #23	ENSGT00390000013344 #24	ENSGT00940000162158 #25	ENSGT00940000162582 #26	ENSGT00860000135614	ENSGT00940000156229 #27	ENSGT00390000012078.b #28	ENSGT00940000156411 #29	ENSGT00390000018845.e #30	ENSGT00940000160867 #31	ENSGT00390000014471 #32	ENSGT00940000157979 #33	ENSGT00940000157174 #34	ENSGT00940000154658.b #35	ENSGT00950000183018.b.k.a #37
Sciuridae	ANCESTRAL SPECIES	6	ENSGT00940000162615	ENSGT00940000153612.A	ENSGT01040000240406.A.b.b	ENSGT01050000244941.A #8	ENSGT00940000158226 #9	ENSGT00940000156061 #10	ENSGT00940000162445	ENSGT00940000154259.l.k.a #13	ENSGT00390000005322 #14	ENSGT00930000151059 #15	ENSGT00940000161837 #16	ENSGT00940000157888 #17	ENSGT00940000158331 #19	ENSGT00940000159043 #20	ENSGT00390000001667 #21	ENSGT01030000234543.F #22	ENSGT00450000040303 #23	ENSGT00390000013344 #24	ENSGT00940000162158 #25	ENSGT00860000135614	ENSGT00940000162582 #26	ENSGT00940000156229 #27	ENSGT00390000012078.b #28	ENSGT00940000156411 #29	ENSGT00390000018845.e #30	ENSGT00940000160867 #31	ENSGT00390000014471 #32	ENSGT00940000157979 #33	ENSGT00940000157174 #34	ENSGT00940000154658.b #35	ENSGT00950000183018.b.k.a.f #36
Marmotini	ANCESTRAL SPECIES	1	ENSGT00940000162615	ENSGT00940000153612.A	ENSGT01040000240406.A.b.b	ENSGT01050000244941.A #8	ENSGT00940000158226 #9	ENSGT00940000156061 #10	ENSGT00940000162445	ENSGT00940000154259.l.k.a #13	ENSGT00390000005322 #14	ENSGT00930000151059 #15	ENSGT00940000161837 #16	ENSGT00940000157888 #17	ENSGT00940000158331 #19	ENSGT00940000159043 #20	ENSGT00390000001667 #21	ENSGT01030000234543.F #22	ENSGT00450000040303 #23	ENSGT00390000013344 #24	ENSGT00940000162158 #25	ENSGT00860000135614	ENSGT00940000162582 #26	ENSGT00940000156229 #27	ENSGT00390000012078.b #28	ENSGT00940000156411 #29	ENSGT00390000018845.e #30	ENSGT00940000160867 #31	ENSGT00390000014471 #32	ENSGT00940000157979 #33	ENSGT00940000157174 #34	ENSGT00940000154658.b #35	ENSGT00950000183018.b.k.a.f #36
Marmotini_b	ANCESTRAL SPECIES	2	ENSGT00940000162615	ENSGT00940000153612.A	ENSGT01040000240406.A.b.b	ENSGT01050000244941.A #8	ENSGT00940000158226 #9	ENSGT00940000156061 #10	ENSGT00940000162445	ENSGT00940000154259.l.k.a #13	ENSGT00390000005322 #14	ENSGT00930000151059 #15	ENSGT00940000161837 #16	ENSGT00940000157888 #17	ENSGT00940000158331 #19	ENSGT00940000159043 #20	ENSGT00390000001667 #21	ENSGT01030000234543.F #22	ENSGT00450000040303 #23	ENSGT00390000013344 #24	ENSGT00940000162158 #25	ENSGT00860000135614	ENSGT00940000162582 #26	ENSGT00940000156229 #27	ENSGT00390000012078.b #28	ENSGT00940000156411 #29	ENSGT00390000018845.e #30	ENSGT00940000160867 #31	ENSGT00390000014471 #32	ENSGT00940000157979 #33	ENSGT00940000157174 #34	ENSGT00940000154658.b #35	ENSGT00950000183018.b.k.b ##37
Squirrel	MODERN SPECIES	159	ENSSTOG00000004339 #7	LPAR1 (ENSSTOG00000020173) #8	MUSK (ENSSTOG00000002341) #9	SVEP1 (ENSSTOG00000009095) #10	ENSSTOG00000034967 #11	ENSSTOG00000029884 #12	TXN (ENSSTOG00000020668) #13	C9orf152 (ENSSTOG00000022259) #14	PALM2AKAP2 (ENSSTOG00000015218) #15	ENSSTOG00000022838 #16	PTPN3 (ENSSTOG00000007885) #17	ENSSTOG00000030241 #18	EPB41L4B (ENSSTOG00000012217) #19	FRRS1L (ENSSTOG00000025868) #20	TMEM245 (ENSSTOG00000029136) #21	CTNNAL1 (ENSSTOG00000006488) #22	ABITRAM (ENSSTOG00000027231) #23	ELP1 (ENSSTOG00000006416) #24	ACTL7A (ENSSTOG00000006402) #25	ACTL7B (ENSSTOG00000006395) #26	KLF4 (ENSSTOG00000022002) #27	RAD23B (ENSSTOG00000022304) #28	ZNF462 (ENSSTOG00000027654) #29	TMEM38B (ENSSTOG00000003014) #30	TAL2 (ENSSTOG00000026950) #31	FKTN (ENSSTOG00000010262) #32	FSD1L (ENSSTOG00000004888) #33	SLC44A1 (ENSSTOG00000012382) #34	ABCA1 (ENSSTOG00000001252) #35	ENSSTOG00000027151 #36	ENSSTOG00000001248 #37
Arctic ground squirrel	MODERN SPECIES	85	OR2K2 (ENSUPAG00010009243)	LPAR1 (ENSUPAG00010009226) #8	MUSK (ENSUPAG00010009107) #9	SVEP1 (ENSUPAG00010009016) #10	ENSUPAG00010008999	ENSUPAG00010008988 #12	ENSUPAG00010008976 #13	C9orf152 (ENSUPAG00010008969) #14	PALM2AKAP2 (ENSUPAG00010008942) #15	ENSUPAG00010008929 #16	ENSUPAG00010008928 #18	PTPN3 (ENSUPAG00010008791) #17	EPB41L4B (ENSUPAG00010008702) #19	FRRS1L (ENSUPAG00010008695) #20	TMEM245 (ENSUPAG00010008594) #21	CTNNAL1 (ENSUPAG00010008529) #22	ABITRAM (ENSUPAG00010008522) #23	ELP1 (ENSUPAG00010008488) #24	ACTL7A (ENSUPAG00010008484) #25	ENSUPAG00010008478	ACTL7B (ENSUPAG00010008470) #26	KLF4 (ENSUPAG00010008462) #27	RAD23B (ENSUPAG00010008451) #28	ZNF462 (ENSUPAG00010008409) #29
Alpin marmot	MODERN SPECIES	30	ECPAS (ENSMMMG00000002448)	OR2K2 (ENSMMMG00000002527)	ENSMMMG00000002533 #7	LPAR1 (ENSMMMG00000002543) #8	MUSK (ENSMMMG00000002586) #9	SVEP1 (ENSMMMG00000002738) #10	ENSMMMG00000002813	ENSMMMG00000002832 #13	C9orf152 (ENSMMMG00000002844) #14	PALM2AKAP2 (ENSMMMG00000002857) #15	ENSMMMG00000002899 #16	PTPN3 (ENSMMMG00000002921) #17	ENSMMMG00000002970 ##18	EPB41L4B (ENSMMMG00000002983) #19	TMEM245 (ENSMMMG00000003081) #21	CTNNAL1 (ENSMMMG00000003185) #22	ABITRAM (ENSMMMG00000003209) #23	ELP1 (ENSMMMG00000003220) #24	ACTL7A (ENSMMMG00000003313) #25	ACTL7B (ENSMMMG00000003319) #26	ENSMMMG00000003324	KLF4 (ENSMMMG00000003350) #27	RAD23B (ENSMMMG00000003374) #28	ZNF462 (ENSMMMG00000003379) #29	TMEM38B (ENSMMMG00000003426) #30	TAL2 (ENSMMMG00000003441) #31	FKTN (ENSMMMG00000003443) #32	FSD1L (ENSMMMG00000003486) #33	SLC44A1 (ENSMMMG00000003596) #34	ABCA1 (ENSMMMG00000003761) #35	ENSMMMG00000003848 #36
Eurasian red squirrel	MODERN SPECIES	6	ENSSVLG00005016829	ENSSVLG00005016816	FHL1 (ENSSVLG00005016764)	LPAR1 (ENSSVLG00005016716) #8	MUSK (ENSSVLG00005016215) #9	ENSSVLG00005016135	SVEP1 (ENSSVLG00005016056) #10	ENSSVLG00005015870	ENSSVLG00005015761 #13	C9orf152 (ENSSVLG00005015706) #14	PALM2AKAP2 (ENSSVLG00005015453) #15	PTPN3 (ENSSVLG00005015106) #17	EPB41L4B (ENSSVLG00005014589) #19	FRRS1L (ENSSVLG00005014483) #20	TMEM245 (ENSSVLG00005014297) #21	CTNNAL1 (ENSSVLG00005014145) #22	ABITRAM (ENSSVLG00005014070) #23	ELP1 (ENSSVLG00005013963) #24	ACTL7A (ENSSVLG00005013866) #25	ACTL7B (ENSSVLG00005013848) #26	ENSSVLG00005013747	KLF4 (ENSSVLG00005013642) #27	ENSSVLG00005013612 #28	ZNF462 (ENSSVLG00005013554) #29	ENSSVLG00005013378	TMEM38B (ENSSVLG00005013327) #30	TAL2 (ENSSVLG00005013299) #31	FKTN (ENSSVLG00005013173) #32	FSD1L (ENSSVLG00005023494) #33	ENSSVLG00005023457 #34	SLC44A1 (ENSSVLG00005023410) #34
Hystricomorpha	ANCESTRAL SPECIES	7	ENSGT00940000162615	ENSGT00940000153612.A	ENSGT01040000240406.A.b.b	ENSGT01050000244941.A #8	ENSGT00940000158226 #9	ENSGT00940000156061 #10	ENSGT00940000162445	ENSGT00940000154259.l.i.b #13	ENSGT00390000005322 #14	ENSGT00930000151059 #15	ENSGT00940000161837 #16	ENSGT00940000157888 #17	ENSGT00940000158331 #19	ENSGT00940000159043 #20	ENSGT00390000001667 #21	ENSGT01030000234543.F #22	ENSGT00450000040303 #23	ENSGT00390000013344 #24	ENSGT00940000162158 #25	ENSGT00940000162582 #26	ENSGT00940000156229 #27	ENSGT00390000012078.b #28	ENSGT00940000156411 #29	ENSGT00390000018845.e #30	ENSGT00940000160867 #31	ENSGT00390000014471 #32	ENSGT00940000157979 #33	ENSGT00940000157174 #34	ENSGT00940000154658.b #35	ENSGT00950000183018.b.k.a.c #37	ENSGT00950000183018.b.k.a.d #37
Naked mole-rat female	DUPLICATION
Naked mole-rat female	MODERN SPECIES	12	PRR29 (ENSHGLG00000044207)	ENSHGLG00000048527	ERN1 (ENSHGLG00000010207)	ENSHGLG00000043981	ENSHGLG00000008353	ENSHGLG00000042409	ENSHGLG00000038730	ENSHGLG00000007159	ENSHGLG00000006423	PLD6 (ENSHGLG00000034027)	COPS3 (ENSHGLG00000005522)	ENSHGLG00000037116	NT5M (ENSHGLG00000040322)	MED9 (ENSHGLG00000036371)	RASD1 (ENSHGLG00000045016)	ENSHGLG00000005018 #22	PEMT (ENSHGLG00000039640)	SREBF1 (ENSHGLG00000019114)	TOM1L2 (ENSHGLG00000006729)	DRC3 (ENSHGLG00000018357)	ATPAF2 (ENSHGLG00000018914)	GID4 (ENSHGLG00000047412)	DRG2 (ENSHGLG00000010347)	ALKBH5 (ENSHGLG00000032335)	ENSHGLG00000041074	ENSHGLG00000005846	ENSHGLG00000042355	SMCR8 (ENSHGLG00000003487)	ENSHGLG00000017898	ENSHGLG00000043308	GOSR2 (ENSHGLG00000013395)
Naked mole-rat female	MODERN SPECIES	3	LPAR1 (ENSHGLG00000004534) #8	MUSK (ENSHGLG00000009128) #9	SVEP1 (ENSHGLG00000010868) #10	TXNDC8 (ENSHGLG00000011464)	ENSHGLG00000014576 #13	ENSHGLG00000042778	C9orf152 (ENSHGLG00000032111) #14	ENSHGLG00000006234 #16	ENSHGLG00000047658	PTPN3 (ENSHGLG00000004892) #17	ENSHGLG00000043831	ENSHGLG00000008130	EPB41L4B (ENSHGLG00000013577) #19	FRRS1L (ENSHGLG00000005022) #20	TMEM245 (ENSHGLG00000005520) #21	CTNNAL1 (ENSHGLG00000017742) #22	ABITRAM (ENSHGLG00000032426) #23	ELP1 (ENSHGLG00000005246) #24	ACTL7A (ENSHGLG00000020244) #25	ENSHGLG00000020431 #26	ENSHGLG00000045183	ENSHGLG00000050898	ENSHGLG00000048617	ENSHGLG00000004266 #27	RAD23B (ENSHGLG00000050281) #28	ENSHGLG00000012147	ZNF462 (ENSHGLG00000038476) #29	ENSHGLG00000035524	TMEM38B (ENSHGLG00000046627) #30	TAL2 (ENSHGLG00000045987) #31	FKTN (ENSHGLG00000018225) #32
Hystricomorpha_a	ANCESTRAL SPECIES	5	ENSGT00940000162615	ENSGT00940000153612.A	ENSGT01040000240406.A.b.b	ENSGT01050000244941.A #8	ENSGT00940000158226 #9	ENSGT00940000156061 #10	ENSGT00940000162445	ENSGT00940000154259.l.i.b #13	ENSGT00390000005322 #14	ENSGT00930000151059 #15	ENSGT00940000161837 #16	ENSGT00940000157888 #17	ENSGT00940000158331 #19	ENSGT00940000159043 #20	ENSGT00390000001667 #21	ENSGT01030000234543.F #22	ENSGT00450000040303 #23	ENSGT00390000013344 #24	ENSGT00940000162158 #25	ENSGT00940000162582 #26	ENSGT00940000156229 #27	ENSGT00390000012078.b #28	ENSGT00940000156411 #29	ENSGT00390000018845.e #30	ENSGT00940000160867 #31	ENSGT00390000014471 #32	ENSGT00940000157979 #33	ENSGT00940000157174 #34	ENSGT00940000154658.b #35	ENSGT00950000183018.b.k.a.c #37	ENSGT00950000183018.b.k.a.d #37
Guinea pig	MODERN SPECIES	93	ZNF483 (ENSCPOG00000004672)	ECPAS (ENSCPOG00000008831)	OR2K2 (ENSCPOG00000000722)	LPAR1 (ENSCPOG00000008205) #8	MUSK (ENSCPOG00000013075) #9	SVEP1 (ENSCPOG00000011771) #10	ENSCPOG00000011769	ENSCPOG00000015348 #13	C9orf152 (ENSCPOG00000033572) #14	PALM2AKAP2 (ENSCPOG00000023281) #15	ENSCPOG00000040438 #16	PTPN3 (ENSCPOG00000009847) #17	EPB41L4B (ENSCPOG00000009831) #19	FRRS1L (ENSCPOG00000009827) #20	TMEM245 (ENSCPOG00000005940) #21	CTNNAL1 (ENSCPOG00000005930) #22	ABITRAM (ENSCPOG00000005927) #23	ELP1 (ENSCPOG00000005907) #24	ACTL7A (ENSCPOG00000005906) #25	ACTL7B (ENSCPOG00000005904) #26	KLF4 (ENSCPOG00000027434) #27
Hystricomorpha_b	ANCESTRAL SPECIES	11	ENSGT00940000162615	ENSGT00940000153612.A	ENSGT01040000240406.A.b.b	ENSGT01050000244941.A #8	ENSGT00940000158226 #9	ENSGT00940000156061 #10	ENSGT00940000162445	ENSGT00940000154259.l.i.b #13	ENSGT00390000005322 #14	ENSGT00930000151059 #15	ENSGT00940000161837 #16	ENSGT00940000157888 #17	ENSGT00940000158331 #19	ENSGT00940000159043 #20	ENSGT00390000001667 #21	ENSGT01030000234543.F #22	ENSGT00450000040303 #23	ENSGT00390000013344 #24	ENSGT00940000162158 #25	ENSGT00940000162582 #26	ENSGT00940000156411 #29	ENSGT00390000018845.e #30	ENSGT00940000160867 #31	ENSGT00390000014471 #32	ENSGT00940000157979 #33	ENSGT00940000157174 #34	ENSGT00940000154658.b #35	ENSGT00950000183018.b.k.a.d #37	ENSGT01040000240406.A.b.a.b	ENSGT01040000240406.A.b.a.a.a.a.b	ENSGT00940000162868
Long-tailed chinchilla	MODERN SPECIES	126	PTGR1 (ENSCLAG00000011342)	ZNF483 (ENSCLAG00000009553)	ECPAS (ENSCLAG00000013423)	LPAR1 (ENSCLAG00000013205) #8	MUSK (ENSCLAG00000013081) #9	SVEP1 (ENSCLAG00000016989) #10	ENSCLAG00000011282	TXN (ENSCLAG00000012680) #13	C9orf152 (ENSCLAG00000013271) #14	PALM2AKAP2 (ENSCLAG00000012201) #15	ENSCLAG00000013097 #16	PTPN3 (ENSCLAG00000014274) #17	EPB41L4B (ENSCLAG00000013753) #19	FRRS1L (ENSCLAG00000011370) #20	TMEM245 (ENSCLAG00000016549) #21	CTNNAL1 (ENSCLAG00000012596) #22	ABITRAM (ENSCLAG00000014447) #23	ELP1 (ENSCLAG00000015454) #24	ACTL7A (ENSCLAG00000010320) #25	ACTL7B (ENSCLAG00000017861) #26	KLF4 (ENSCLAG00000010034) #27	RAD23B (ENSCLAG00000010897) #28	ENSCLAG00000011424	ZNF462 (ENSCLAG00000016925) #29	TMEM38B (ENSCLAG00000014738) #30	TAL2 (ENSCLAG00000012271) #31	FKTN (ENSCLAG00000010039) #32	FSD1L (ENSCLAG00000010824) #33	SLC44A1 (ENSCLAG00000015036) #34	ABCA1 (ENSCLAG00000015148) #35	ENSCLAG00000012516 #37
Degu	MODERN SPECIES	135		ENSODEG00000005379 #8	ENSODEG00000005183	MUSK (ENSODEG00000004445) #9	SVEP1 (ENSODEG00000005675) #10	ENSODEG00000005307	ENSODEG00000004871 #13	C9orf152 (ENSODEG00000006257) #14	ENSODEG00000019276	PALM2AKAP2 (ENSODEG00000005862) #15	ENSODEG00000004789 #16	PTPN3 (ENSODEG00000004452) #17	EPB41L4B (ENSODEG00000004839) #19	FRRS1L (ENSODEG00000004637) #20	TMEM245 (ENSODEG00000004253) #21	CTNNAL1 (ENSODEG00000004314) #22	ABITRAM (ENSODEG00000004189) #23	ELP1 (ENSODEG00000004049) #24	ACTL7A (ENSODEG00000019643) #25	ACTL7B (ENSODEG00000019638) #26	ENSODEG00000019579	ENSODEG00000019543	ENSODEG00000006716 #27	ENSODEG00000006336 #28	ENSODEG00000006058	ZNF462 (ENSODEG00000005606) #29	ENSODEG00000019163	TMEM38B (ENSODEG00000005342) #30	TAL2 (ENSODEG00000019145) #31	ENSODEG00000005239 #32	FSD1L (ENSODEG00000004623) #33
Rodentia_B	ANCESTRAL SPECIES	6	ENSGT00940000162615	ENSGT00940000153612.A	ENSGT01040000240406.A.b.b	ENSGT01050000244941.A #8	ENSGT00940000158226 #9	ENSGT00940000156061 #10	ENSGT00940000162445	ENSGT00940000154259.l #13	ENSGT00390000005322 #14	ENSGT00930000151059 #15	ENSGT00940000161837 #16	ENSGT00940000157888 #17	ENSGT00940000158331 #19	ENSGT00940000159043 #20	ENSGT00390000001667 #21	ENSGT01030000234543.F #22	ENSGT00450000040303 #23	ENSGT00390000013344 #24	ENSGT00940000162158 #25	ENSGT00860000135614	ENSGT00940000162582 #26	ENSGT00940000156229 #27	ENSGT00390000012078.b #28	ENSGT00940000156411 #29	ENSGT00390000018845.e #30	ENSGT00940000160867 #31	ENSGT00390000014471 #32	ENSGT00940000157979 #33	ENSGT00940000157174 #34	ENSGT00940000154658.b #35	ENSGT00950000183018.b.k.a #37
Kangaroo rat	MODERN SPECIES	386	Ptgr1 (ENSDORG00000002456)	Zkscan16 (ENSDORG00000015480)	ENSDORG00000013677	Lpar1 (ENSDORG00000016253) #8	Musk (ENSDORG00000011874) #9	Svep1 (ENSDORG00000012431) #10	Txndc8 (ENSDORG00000012430)	Txn1 (ENSDORG00000026523) #13	D630039A03Rik (ENSDORG00000024588) #14	Pakap (ENSDORG00000005841) #15	Pakap (ENSDORG00000025248) #16	ENSDORG00000000786 #17	Epb41l4b (ENSDORG00000012315) #19	Frrs1l (ENSDORG00000012313) #20	Tmem245 (ENSDORG00000012310) #21	Ctnnal1 (ENSDORG00000008619) #22	Abitram (ENSDORG00000008618) #23	Elp1 (ENSDORG00000008614) #24	Actl7a (ENSDORG00000008612) #25	Actl7b (ENSDORG00000008610) #26	ENSDORG00000026534 #27	Rad23b (ENSDORG00000006946) #28	Zfp462 (ENSDORG00000025368) #29	Tmem38b (ENSDORG00000011779) #30	Tal2 (ENSDORG00000012882) #31	Fktn (ENSDORG00000012880) #32	Fsd1l (ENSDORG00000012878) #33	Slc44a1 (ENSDORG00000009386) #34	Abca1 (ENSDORG00000000957) #35	ENSDORG00000000955 ##37	ENSDORG00000004991 ##37
Myomorpha	ANCESTRAL SPECIES	1	ENSGT00940000162615	ENSGT00940000153612.A	ENSGT01040000240406.A.b.b	ENSGT01050000244941.A #8	ENSGT00940000158226 #9	ENSGT00940000156061 #10	ENSGT00940000162445	ENSGT00940000154259.l #13	ENSGT00390000005322 #14	ENSGT00930000151059 #15	ENSGT00940000161837 #16	ENSGT00940000157888 #17	ENSGT00940000158331 #19	ENSGT00940000159043 #20	ENSGT00390000001667 #21	ENSGT01030000234543.F #22	ENSGT00450000040303 #23	ENSGT00390000013344 #24	ENSGT00940000162158 #25	ENSGT00860000135614	ENSGT00940000162582 #26	ENSGT00940000156229 #27	ENSGT00390000012078.b #28	ENSGT00940000156411 #29	ENSGT00390000018845.e #30	ENSGT00940000160867 #31	ENSGT00390000014471 #32	ENSGT00940000157979 #33	ENSGT00940000157174 #34	ENSGT00940000154658.b #35	ENSGT00950000183018.b.k.a #37
Muroidea	ANCESTRAL SPECIES	1	ENSGT00940000162615	ENSGT00940000153612.A	ENSGT01040000240406.A.b.b	ENSGT01050000244941.A #8	ENSGT00940000158226 #9	ENSGT00940000156061 #10	ENSGT00940000162445	ENSGT00940000154259.l #13	ENSGT00390000005322 #14	ENSGT00930000151059 #15	ENSGT00940000161837 #16	ENSGT00940000157888 #17	ENSGT00940000158331 #19	ENSGT00940000159043 #20	ENSGT00390000001667 #21	ENSGT01030000234543.F #22	ENSGT00450000040303 #23	ENSGT00390000013344 #24	ENSGT00940000162158 #25	ENSGT00860000135614	ENSGT00940000162582 #26	ENSGT00940000156229 #27	ENSGT00390000012078.b #28	ENSGT00940000156411 #29	ENSGT00390000018845.e #30	ENSGT00940000160867 #31	ENSGT00390000014471 #32	ENSGT00940000157979 #33	ENSGT00940000157174 #34	ENSGT00940000154658.b #35	ENSGT00950000183018.b.k.a.a #37
Upper Galilee mountains blind mole rat	MODERN SPECIES	1696						Svep1 (ENSNGAG00000013510) #10	Txndc8 (ENSNGAG00000006645)	Txn1 (ENSNGAG00000019492) #13	D630039A03Rik (ENSNGAG00000020407) #14	Pakap (ENSNGAG00000002382) #15	Pakap (ENSNGAG00000004186) #16	Ptpn3 (ENSNGAG00000013494) #17	Epb41l4b (ENSNGAG00000010878) #19	Frrs1l (ENSNGAG00000005746) #20	Tmem245 (ENSNGAG00000019552) #21	Ctnnal1 (ENSNGAG00000018021) #22	Abitram (ENSNGAG00000019471) #23	Elp1 (ENSNGAG00000008235) #24	Actl7a (ENSNGAG00000006112) #25	Actl7b (ENSNGAG00000005911) #26	Klf4 (ENSNGAG00000014416) #27	Rad23b (ENSNGAG00000019280) #28	ENSNGAG00000017649	Zfp462 (ENSNGAG00000019541) #29	ENSNGAG00000002351	ENSNGAG00000007426	Tmem38b (ENSNGAG00000020880) #30	Tal2 (ENSNGAG00000002061) #31	Fktn (ENSNGAG00000003096) #32	Fsd1l (ENSNGAG00000007353) #33
Muroidea_A	ANCESTRAL SPECIES	3	ENSGT00940000162615	ENSGT00940000153612.A	ENSGT01040000240406.A.b.b	ENSGT01050000244941.A #8	ENSGT00940000158226 #9	ENSGT00940000156061 #10	ENSGT00940000162445	ENSGT00940000154259.l #13	ENSGT00390000005322 #14	ENSGT00930000151059 #15	ENSGT00940000161837 #16	ENSGT00940000157888 #17	ENSGT00940000158331 #19	ENSGT00940000159043 #20	ENSGT00390000001667 #21	ENSGT01030000234543.F #22	ENSGT00450000040303 #23	ENSGT00390000013344 #24	ENSGT00940000162158 #25	ENSGT00860000135614	ENSGT00940000162582 #26	ENSGT00940000156229 #27	ENSGT00390000012078.b #28	ENSGT00940000156411 #29	ENSGT00390000018845.e #30	ENSGT00940000160867 #31	ENSGT00390000014471 #32	ENSGT00940000157979 #33	ENSGT00940000157174 #34	ENSGT00940000154658.b #35	ENSGT00950000183018.b.k.a.a #37
Cricetidae	ANCESTRAL SPECIES	2	ENSGT00940000162615	ENSGT00940000153612.A	ENSGT01040000240406.A.b.b	ENSGT01050000244941.A #8	ENSGT00940000158226 #9	ENSGT00940000156061 #10	ENSGT00940000162445	ENSGT00940000154259.l #13	ENSGT00390000005322 #14	ENSGT00930000151059 #15	ENSGT00940000161837 #16	ENSGT00940000157888 #17	ENSGT00940000158331 #19	ENSGT00940000159043 #20	ENSGT00390000001667 #21	ENSGT01030000234543.F #22	ENSGT00450000040303 #23	ENSGT00390000013344 #24	ENSGT00940000162158 #25	ENSGT00860000135614	ENSGT00940000162582 #26	ENSGT00940000156229 #27	ENSGT00390000012078.b #28	ENSGT00940000156411 #29	ENSGT00390000018845.e #30	ENSGT00940000160867 #31	ENSGT00390000014471 #32	ENSGT00940000157979 #33	ENSGT00940000157174 #34	ENSGT00940000154658.b #35	ENSGT00950000183018.b.k.a.a #37
Cricetidae_B	ANCESTRAL SPECIES	2	ENSGT00940000162615	ENSGT00940000153612.A	ENSGT01040000240406.A.b.b	ENSGT01050000244941.A #8	ENSGT00940000158226 #9	ENSGT00940000156061 #10	ENSGT00940000162445	ENSGT00940000154259.l #13	ENSGT00390000005322 #14	ENSGT00930000151059 #15	ENSGT00940000161837 #16	ENSGT00940000157888 #17	ENSGT00940000158331 #19	ENSGT00940000159043 #20	ENSGT00390000001667 #21	ENSGT01030000234543.F #22	ENSGT00450000040303 #23	ENSGT00390000013344 #24	ENSGT00940000162158 #25	ENSGT00860000135614	ENSGT00940000162582 #26	ENSGT00940000156229 #27	ENSGT00390000012078.b #28	ENSGT00940000156411 #29	ENSGT00390000018845.e #30	ENSGT00940000160867 #31	ENSGT00390000014471 #32	ENSGT00940000157979 #33	ENSGT00940000157174 #34	ENSGT00940000154658.b #35	ENSGT00950000183018.b.k.a.a #37
Northern American deer mouse	MODERN SPECIES	11	Zkscan16 (ENSPEMG00000013898)	Ecpas (ENSPEMG00000003219)	Or2k2 (ENSPEMG00000000791)	Lpar1 (ENSPEMG00000021318) #8	Musk (ENSPEMG00000021824) #9	Svep1 (ENSPEMG00000022667) #10	Txndc8 (ENSPEMG00000021665)	Txn1 (ENSPEMG00000022087) #13	D630039A03Rik (ENSPEMG00000025754) #14	Pakap (ENSPEMG00000013487) #15	Pakap (ENSPEMG00000021128) #16	Ptpn3 (ENSPEMG00000021519) #17	Epb41l4b (ENSPEMG00000022016) #19	Frrs1l (ENSPEMG00000021316) #20	Tmem245 (ENSPEMG00000021143) #21	Ctnnal1 (ENSPEMG00000003592) #22	Abitram (ENSPEMG00000023184) #23	Elp1 (ENSPEMG00000020948) #24	Actl7a (ENSPEMG00000004746) #25	ENSPEMG00000027769	Actl7b (ENSPEMG00000002319) #26	ENSPEMG00000028786	Klf4 (ENSPEMG00000020552) #27	Rad23b (ENSPEMG00000009532) #28	ENSPEMG00000022238	Zfp462 (ENSPEMG00000001794) #29	Tmem38b (ENSPEMG00000017137) #30	Tal2 (ENSPEMG00000030662) #31	ENSPEMG00000029455	Fktn (ENSPEMG00000026889) #32	Fsd1l (ENSPEMG00000017531) #33
Prairie vole	MODERN SPECIES	355	Ecpas (ENSMOCG00000020767)	Or2k2 (ENSMOCG00000006465)	ENSMOCG00000001270	Lpar1 (ENSMOCG00000021694) #8	Musk (ENSMOCG00000013873) #9	Svep1 (ENSMOCG00000006851) #10	Txndc8 (ENSMOCG00000009554)	Txn1 (ENSMOCG00000002238) #13	D630039A03Rik (ENSMOCG00000013462) #14	Pakap (ENSMOCG00000022251) #15	Pakap (ENSMOCG00000013326) #16	Ptpn3 (ENSMOCG00000016235) #17	Epb41l4b (ENSMOCG00000019884) #19	Frrs1l (ENSMOCG00000004197) #20	Tmem245 (ENSMOCG00000017257) #21	Ctnnal1 (ENSMOCG00000020856) #22	Abitram (ENSMOCG00000022237) #23	Elp1 (ENSMOCG00000019756) #24	Actl7a (ENSMOCG00000002715) #25	Actl7b (ENSMOCG00000003121) #26	Klf4 (ENSMOCG00000018993) #27	Rad23b (ENSMOCG00000012021) #28	Zfp462 (ENSMOCG00000014957) #29	ENSMOCG00000020459	Tmem38b (ENSMOCG00000017340) #30	Tal2 (ENSMOCG00000003929) #31	Fktn (ENSMOCG00000022995) #32	Fsd1l (ENSMOCG00000022827) #33	Slc44a1 (ENSMOCG00000010191) #34	Abca1 (ENSMOCG00000012458) #35	ENSMOCG00000011792 #37
Cricetinae	ANCESTRAL SPECIES	21	ENSGT00940000162615	ENSGT00940000153612.A	ENSGT01040000240406.A.b.b	ENSGT01050000244941.A #8	ENSGT00940000158226 #9	ENSGT00940000156061 #10	ENSGT00940000162445	ENSGT00940000154259.l #13	ENSGT00390000005322 #14	ENSGT00930000151059 #15	ENSGT00940000161837 #16	ENSGT00940000157888 #17	ENSGT00940000158331 #19	ENSGT00940000159043 #20	ENSGT00390000001667 #21	ENSGT01030000234543.F #22	ENSGT00450000040303 #23	ENSGT00390000013344 #24	ENSGT00940000162158 #25	ENSGT00940000162582 #26	ENSGT00860000135614	ENSGT00940000156229 #27	ENSGT00390000012078.b #28	ENSGT00940000156411 #29	ENSGT00390000018845.e #30	ENSGT00940000160867 #31	ENSGT00390000014471 #32	ENSGT00940000157979 #33	ENSGT00940000157174 #34	ENSGT00940000154658.b #35	ENSGT00950000183018.b.k.a.a #37
Chinese hamster chok1gshd	MODERN SPECIES	111	Or2k2 (ENSCGRG00001005176)	Lpar1 (ENSCGRG00001010608) #8	Musk (ENSCGRG00001014907) #9	Svep1 (ENSCGRG00001018972) #10	ENSCGRG00001009840	Txndc8 (ENSCGRG00001010737)	ENSCGRG00001003261	Txn1 (ENSCGRG00001007919) #13	D630039A03Rik (ENSCGRG00001001444) #14	Pakap (ENSCGRG00001008014) #15	Pakap (ENSCGRG00001013485) #16	Ptpn3 (ENSCGRG00001015039) #17	Epb41l4b (ENSCGRG00001011607) #19	Frrs1l (ENSCGRG00001014472) #20	Tmem245 (ENSCGRG00001019702) #21	Ctnnal1 (ENSCGRG00001011240) #22	Abitram (ENSCGRG00001017133) #23	Elp1 (ENSCGRG00001021382) #24	Actl7a (ENSCGRG00001003974) #25	Actl7b (ENSCGRG00001005608) #26	ENSCGRG00001006974	Klf4 (ENSCGRG00001024655) #27	Rad23b (ENSCGRG00001011735) #28	Zfp462 (ENSCGRG00001014412) #29	Tmem38b (ENSCGRG00001023625) #30	Tal2 (ENSCGRG00001005967) #31	Fktn (ENSCGRG00001011241) #32	Fsd1l (ENSCGRG00001014042) #33	ENSCGRG00001017025	Slc44a1 (ENSCGRG00001023017) #34	Abca1 (ENSCGRG00001017941) #35
Golden Hamster	MODERN SPECIES	680														Frrs1l (ENSMAUG00000016371) #20	Tmem245 (ENSMAUG00000000881) #21	ENSMAUG00000019791 #22	Abitram (ENSMAUG00000015969) #23	Actl7a (ENSMAUG00000005039) #25	Actl7b (ENSMAUG00000006243) #26	Klf4 (ENSMAUG00000007972) #27	Rad23b (ENSMAUG00000018694) #28	Zfp462 (ENSMAUG00000018357) #29	ENSMAUG00000012414	Tmem38b (ENSMAUG00000012115) #30	Tal2 (ENSMAUG00000008050) #31	Fktn (ENSMAUG00000017242) #32	Fsd1l (ENSMAUG00000015803) #33	Slc44a1 (ENSMAUG00000013862) #34	Abca1 (ENSMAUG00000014255) #35	Nipsnap3b (ENSMAUG00000013369) #37	Nipsnap3a (ENSMAUG00000000390) #37
Murinae	ANCESTRAL SPECIES	2	ENSGT00940000162615	ENSGT00940000153612.A	ENSGT01040000240406.A.b.b	ENSGT01050000244941.A #8	ENSGT00940000158226 #9	ENSGT00940000156061 #10	ENSGT00940000162445	ENSGT00940000154259.l #13	ENSGT00390000005322 #14	ENSGT00930000151059 #15	ENSGT00940000161837 #16	ENSGT00940000157888 #17	ENSGT00940000158331 #19	ENSGT00940000159043 #20	ENSGT00390000001667 #21	ENSGT01030000234543.F #22	ENSGT00450000040303 #23	ENSGT00390000013344 #24	ENSGT00940000162158 #25	ENSGT00860000135614	ENSGT00940000162582 #26	ENSGT00940000156229 #27	ENSGT00390000012078.b #28	ENSGT00940000156411 #29	ENSGT00390000018845.e #30	ENSGT00940000160867 #31	ENSGT00390000014471 #32	ENSGT00940000157979 #33	ENSGT00940000157174 #34	ENSGT00940000154658.b #35	ENSGT00950000183018.b.k.a.a #37
Rat	MODERN SPECIES	15	Zfp483 (ENSRNOG00000014975)	Ndufa5-ps4 (ENSRNOG00000014899)	Ecpas (ENSRNOG00000025076)	Or2k2 (ENSRNOG00000014263)	Lpar1 (ENSRNOG00000013656) #8	Musk (ENSRNOG00000033567) #9	Svep1 (ENSRNOG00000033110) #10	Txndc8 (ENSRNOG00000029073)	Txn1 (ENSRNOG00000012081) #13	C5h9orf152 (ENSRNOG00000012068) #14	Akap2 (ENSRNOG00000011504) #15	Ptpn3 (ENSRNOG00000011425) #17	Epb41l4b (ENSRNOG00000056550) #19	Frrs1l (ENSRNOG00000043103) #20	Tmem245 (ENSRNOG00000026271) #21	Ctnnal1 (ENSRNOG00000010593) #22	Abitram (ENSRNOG00000010532) #23	Elp1 (ENSRNOG00000016725) #24	Actl7a (ENSRNOG00000016641) #25	Actl7b (ENSRNOG00000016621) #26	AABR07048312.1 (ENSRNOG00000029600)	Klf4 (ENSRNOG00000016299) #27	Rad23b (ENSRNOG00000016137) #28	ENSRNOG00000063835	ENSRNOG00000066746	ENSRNOG00000067901	Zfp462 (ENSRNOG00000032048) #29	LOC120103152 (ENSRNOG00000034161)	ENSRNOG00000065525	LOC685311 (ENSRNOG00000065946)	RGD1564956 (ENSRNOG00000017640)
Mus	ANCESTRAL SPECIES	3	ENSGT00940000162615	ENSGT00940000153612.A	ENSGT01040000240406.A.b.b	ENSGT01050000244941.A #8	ENSGT00940000158226 #9	ENSGT00940000156061 #10	ENSGT00940000162445	ENSGT00940000154259.l #13	ENSGT00390000005322 #14	ENSGT00930000151059 #15	ENSGT00940000161837 #16	ENSGT00940000157888 #17	ENSGT00940000158331 #19	ENSGT00940000159043 #20	ENSGT00390000001667 #21	ENSGT01030000234543.F #22	ENSGT00450000040303 #23	ENSGT00390000013344 #24	ENSGT00940000162158 #25	ENSGT00860000135614	ENSGT00940000162582 #26	ENSGT00940000156229 #27	ENSGT00390000012078.b #28	ENSGT00940000156411 #29	ENSGT00390000018845.e #30	ENSGT00940000160867 #31	ENSGT00390000014471 #32	ENSGT00940000157979 #33	ENSGT00940000157174 #34	ENSGT00940000154658.b #35	ENSGT00950000183018.b.k.a.a #37
Shrew mouse	MODERN SPECIES	19	Ecpas (MGP_PahariEiJ_G0028392)	Or2k2 (MGP_PahariEiJ_G0028391)	Lpar1 (MGP_PahariEiJ_G0028390) #8	Musk (MGP_PahariEiJ_G0028389) #9	Svep1 (MGP_PahariEiJ_G0028388) #10	Txndc8 (MGP_PahariEiJ_G0028387)	Txn1 (MGP_PahariEiJ_G0028386) #13	D630039A03Rik (MGP_PahariEiJ_G0028385) #14	MGP_PahariEiJ_G0028384 #15	MGP_PahariEiJ_G0028383 #15	Pakap (MGP_PahariEiJ_G0028382) #16	Ptpn3 (MGP_PahariEiJ_G0028381) #17	Epb41l4b (MGP_PahariEiJ_G0028380) #19	Frrs1l (MGP_PahariEiJ_G0028379) #20	Tmem245 (MGP_PahariEiJ_G0028378) #21	Ctnnal1 (MGP_PahariEiJ_G0028377) #22	Abitram (MGP_PahariEiJ_G0028376) #23	Elp1 (MGP_PahariEiJ_G0028375) #24	Actl7a (MGP_PahariEiJ_G0028374) #25	MGP_PahariEiJ_G0028373	Actl7b (MGP_PahariEiJ_G0028372) #26	MGP_PahariEiJ_G0028371 #27	Rad23b (MGP_PahariEiJ_G0028370) #28	Zfp462 (MGP_PahariEiJ_G0028369) #29	Tmem38b (MGP_PahariEiJ_G0028368) #30	Tal2 (MGP_PahariEiJ_G0028367) #31	Fktn (MGP_PahariEiJ_G0028366) #32	Fsd1l (MGP_PahariEiJ_G0028365) #33	Slc44a1 (MGP_PahariEiJ_G0028364) #34	Abca1 (MGP_PahariEiJ_G0028363) #35	Nipsnap3b (MGP_PahariEiJ_G0028362) #37
Mus_A	ANCESTRAL SPECIES	3	ENSGT00940000162615	ENSGT00940000153612.A	ENSGT01040000240406.A.b.b	ENSGT01050000244941.A #8	ENSGT00940000158226 #9	ENSGT00940000156061 #10	ENSGT00940000162445	ENSGT00940000154259.l #13	ENSGT00390000005322 #14	ENSGT00930000151059 #15	ENSGT00940000161837 #16	ENSGT00940000157888 #17	ENSGT00940000158331 #19	ENSGT00940000159043 #20	ENSGT00390000001667 #21	ENSGT01030000234543.F #22	ENSGT00450000040303 #23	ENSGT00390000013344 #24	ENSGT00940000162158 #25	ENSGT00860000135614	ENSGT00940000162582 #26	ENSGT00940000156229 #27	ENSGT00390000012078.b #28	ENSGT00940000156411 #29	ENSGT00390000018845.e #30	ENSGT00940000160867 #31	ENSGT00390000014471 #32	ENSGT00940000157979 #33	ENSGT00940000157174 #34	ENSGT00940000154658.b #35	ENSGT00950000183018.b.k.a.a #37
Ryukyu mouse	MODERN SPECIES	13	Ecpas (MGP_CAROLIEiJ_G0026054)	Or2k2 (MGP_CAROLIEiJ_G0026053)	Lpar1 (MGP_CAROLIEiJ_G0026052) #8	Musk (MGP_CAROLIEiJ_G0026051) #9	Svep1 (MGP_CAROLIEiJ_G0026050) #10	MGP_CAROLIEiJ_G0026049	Txn1 (MGP_CAROLIEiJ_G0026048) #13	D630039A03Rik (MGP_CAROLIEiJ_G0026047) #14	MGP_CAROLIEiJ_G0026046 #15	MGP_CAROLIEiJ_G0026045 #15	Pakap (MGP_CAROLIEiJ_G0026044) #16	Ptpn3 (MGP_CAROLIEiJ_G0026043) #17	Epb41l4b (MGP_CAROLIEiJ_G0026042) #19	Frrs1l (MGP_CAROLIEiJ_G0026041) #20	Tmem245 (MGP_CAROLIEiJ_G0026040) #21	Ctnnal1 (MGP_CAROLIEiJ_G0026039) #22	Abitram (MGP_CAROLIEiJ_G0026038) #23	Elp1 (MGP_CAROLIEiJ_G0026037) #24	MGP_CAROLIEiJ_G0026036 #26	Klf4 (MGP_CAROLIEiJ_G0026035) #27	Rad23b (MGP_CAROLIEiJ_G0026034) #28	MGP_CAROLIEiJ_G0026033 #29	Tmem38b (MGP_CAROLIEiJ_G0026032) #30	Tal2 (MGP_CAROLIEiJ_G0026031) #31	Fktn (MGP_CAROLIEiJ_G0026030) #32	Fsd1l (MGP_CAROLIEiJ_G0026029) #33	Slc44a1 (MGP_CAROLIEiJ_G0026028) #34	Abca1 (MGP_CAROLIEiJ_G0026027) #35	Nipsnap3b (MGP_CAROLIEiJ_G0026026) #37	Nipsnap3a (MGP_CAROLIEiJ_G0026025) #37	Or13d1 (MGP_CAROLIEiJ_G0026024)
Mus_B	ANCESTRAL SPECIES	5	ENSGT00940000162615	ENSGT00940000153612.A	ENSGT01040000240406.A.b.b	ENSGT01050000244941.A #8	ENSGT00940000158226 #9	ENSGT00940000156061 #10	ENSGT00940000162445	ENSGT00940000154259.l #13	ENSGT00390000005322 #14	ENSGT00930000151059 #15	ENSGT00940000161837 #16	ENSGT00940000157888 #17	ENSGT00940000158331 #19	ENSGT00940000159043 #20	ENSGT00390000001667 #21	ENSGT01030000234543.F #22	ENSGT00450000040303 #23	ENSGT00390000013344 #24	ENSGT00940000162158 #25	ENSGT00860000135614	ENSGT00940000162582 #26	ENSGT00940000156229 #27	ENSGT00390000012078.b #28	ENSGT00940000156411 #29	ENSGT00390000018845.e #30	ENSGT00940000160867 #31	ENSGT00390000014471 #32	ENSGT00940000157979 #33	ENSGT00940000157174 #34	ENSGT00940000154658.b #35	ENSGT00950000183018.b.k.a.a #37
Mouse	MODERN SPECIES	13	Ecpas (ENSMUSG00000050812)	Or2k2 (ENSMUSG00000043385)	Lpar1 (ENSMUSG00000038668) #8	Musk (ENSMUSG00000057280) #9	Svep1 (ENSMUSG00000028369) #10	Txndc8 (ENSMUSG00000038709)	Txn1 (ENSMUSG00000028367) #13	D630039A03Rik (ENSMUSG00000052117) #14	Pakap (ENSMUSG00000038729) #15	Pakap (ENSMUSG00000089945)	Pakap (ENSMUSG00000090053) #16	Ptpn3 (ENSMUSG00000038764) #17	Epb41l4b (ENSMUSG00000028434) #19	Frrs1l (ENSMUSG00000045589) #20	Tmem245 (ENSMUSG00000055296) #21	Ctnnal1 (ENSMUSG00000038816) #22	Abitram (ENSMUSG00000038827) #23	Elp1 (ENSMUSG00000028431) #24	Actl7a (ENSMUSG00000070979) #25	Actl7b (ENSMUSG00000070980) #26	Klf4 (ENSMUSG00000003032) #27	Rad23b (ENSMUSG00000028426) #28	Zfp462 (ENSMUSG00000060206) #29	Tmem38b (ENSMUSG00000028420) #30	Tal2 (ENSMUSG00000028417) #31	Fktn (ENSMUSG00000028414) #32	Fsd1l (ENSMUSG00000054752) #33	Slc44a1 (ENSMUSG00000028412) #34	Abca1 (ENSMUSG00000015243) #35	Nipsnap3b (ENSMUSG00000015247) #37	Nipsnap3a (ENSMUSG00000015242) #37
Mus_C	ANCESTRAL SPECIES	2	ENSGT00940000162615	ENSGT00940000153612.A	ENSGT01040000240406.A.b.b	ENSGT01050000244941.A #8	ENSGT00940000158226 #9	ENSGT00940000156061 #10	ENSGT00940000162445	ENSGT00940000154259.l #13	ENSGT00390000005322 #14	ENSGT00930000151059 #15	ENSGT00940000161837 #16	ENSGT00940000157888 #17	ENSGT00940000158331 #19	ENSGT00940000159043 #20	ENSGT00390000001667 #21	ENSGT01030000234543.F #22	ENSGT00450000040303 #23	ENSGT00390000013344 #24	ENSGT00940000162158 #25	ENSGT00860000135614	ENSGT00940000162582 #26	ENSGT00940000156229 #27	ENSGT00390000012078.b #28	ENSGT00940000156411 #29	ENSGT00390000018845.e #30	ENSGT00940000160867 #31	ENSGT00390000014471 #32	ENSGT00940000157979 #33	ENSGT00940000157174 #34	ENSGT00940000154658.b #35	ENSGT00950000183018.b.k.a.a #37
spretus	MODERN SPECIES	13	Ecpas (MGP_SPRETEiJ_G0027019)	Or2k2 (MGP_SPRETEiJ_G0027018)	MGP_SPRETEiJ_G0027017	Musk (MGP_SPRETEiJ_G0027016) #9	Svep1 (MGP_SPRETEiJ_G0027015) #10	Txndc8 (MGP_SPRETEiJ_G0027014)	Txn1 (MGP_SPRETEiJ_G0027013) #13	D630039A03Rik (MGP_SPRETEiJ_G0027012) #14	MGP_SPRETEiJ_G0027011 #15	MGP_SPRETEiJ_G0027010 #15	Pakap (MGP_SPRETEiJ_G0027009) #16	MGP_SPRETEiJ_G0027008 #17	Epb41l4b (MGP_SPRETEiJ_G0027007) #19	Frrs1l (MGP_SPRETEiJ_G0027006) #20	Tmem245 (MGP_SPRETEiJ_G0027005) #21	MGP_SPRETEiJ_G0027004 #22	Abitram (MGP_SPRETEiJ_G0027003) #23	Elp1 (MGP_SPRETEiJ_G0027002) #24	Actl7a (MGP_SPRETEiJ_G0027001) #25	MGP_SPRETEiJ_G0027000	Actl7b (MGP_SPRETEiJ_G0026999) #26	Klf4 (MGP_SPRETEiJ_G0026998) #27	Rad23b (MGP_SPRETEiJ_G0026997) #28	Zfp462 (MGP_SPRETEiJ_G0026996) #29	MGP_SPRETEiJ_G0026995	Tal2 (MGP_SPRETEiJ_G0026994) #31	Fktn (MGP_SPRETEiJ_G0026993) #32	Fsd1l (MGP_SPRETEiJ_G0026992) #33	Slc44a1 (MGP_SPRETEiJ_G0026991) #34	Abca1 (MGP_SPRETEiJ_G0026990) #35	Nipsnap3b (MGP_SPRETEiJ_G0026989) #37
Steppe mouse	MODERN SPECIES	3315												Ptpn3 (ENSMSIG00000006824) #17	Epb41l4b (ENSMSIG00000006766) #19	Frrs1l (ENSMSIG00000006753) #20	Tmem245 (ENSMSIG00000006575) #21	Ctnnal1 (ENSMSIG00000006477) #22	Abitram (ENSMSIG00000006443) #23	Elp1 (ENSMSIG00000006298) #24	Actl7a (ENSMSIG00000006279) #25	ENSMSIG00000006276	Actl7b (ENSMSIG00000006268) #26	ENSMSIG00000006203	Klf4 (ENSMSIG00000006179) #27	Rad23b (ENSMSIG00000006092) #28	ENSMSIG00000006075	ENSMSIG00000006068	Zfp462 (ENSMSIG00000005905) #29	Tmem38b (ENSMSIG00000005837) #30	ENSMSIG00000005822	Tal2 (ENSMSIG00000005813) #31	Fktn (ENSMSIG00000005717) #32
Lesser Egyptian jerboa	MODERN SPECIES	61	ENSJJAG00000010686	Lpar1 (ENSJJAG00000017163) #8	Musk (ENSJJAG00000022339) #9	ENSJJAG00000014547	Svep1 (ENSJJAG00000012603) #10	Txndc8 (ENSJJAG00000000349)	Txn1 (ENSJJAG00000000678) #13	D630039A03Rik (ENSJJAG00000018502) #14	Pakap (ENSJJAG00000010638) #15	Pakap (ENSJJAG00000006113) #16	Ptpn3 (ENSJJAG00000005406) #17	Epb41l4b (ENSJJAG00000002838) #19	Frrs1l (ENSJJAG00000017072) #20	ENSJJAG00000014563 #21	ENSJJAG00000017880 #21	Ctnnal1 (ENSJJAG00000005394) #22	Abitram (ENSJJAG00000024119) #23	Elp1 (ENSJJAG00000022600) #24	Actl7a (ENSJJAG00000006797) #25	Actl7b (ENSJJAG00000006166) #26	ENSJJAG00000001377	ENSJJAG00000023460 #27	Rad23b (ENSJJAG00000018297) #28	Zfp462 (ENSJJAG00000017478) #29	Tmem38b (ENSJJAG00000017610) #30	ENSJJAG00000012167	Tal2 (ENSJJAG00000007872) #31	Fktn (ENSJJAG00000018854) #32	Fsd1l (ENSJJAG00000020333) #33	Slc44a1 (ENSJJAG00000012770) #34	ENSJJAG00000007650
Lagomorpha	ANCESTRAL SPECIES	16	ENSGT00940000154810	ENSGT00940000162615	ENSGT00940000153612.A	ENSGT01050000244941.A #8	ENSGT00940000158226 #9	ENSGT00940000156061 #10	ENSGT00940000162445	ENSGT00940000154259.l.h #13	ENSGT00390000005322 #14	ENSGT00930000151059 #15	ENSGT00940000161837 #16	ENSGT00940000157888 #17	ENSGT00940000158331 #19	ENSGT00940000159043 #20	ENSGT00390000001667 #21	ENSGT01030000234543.F #22	ENSGT00450000040303 #23	ENSGT00390000013344 #24	ENSGT00940000162158 #25	ENSGT00940000162582 #26	ENSGT00940000156229 #27	ENSGT00390000012078.b.k #28	ENSGT00940000156411 #29	ENSGT00940000160867 #31	ENSGT00390000014471 #32	ENSGT00940000157979 #33	ENSGT00940000157174 #34	ENSGT00940000154658.b #35	ENSGT00950000183018.b.k.a #37	ENSGT01040000240406.A.b.a.b	ENSGT01040000240406.A.b.a.a.a.a.a.a.b
Rabbit	MODERN SPECIES		ENSOCUG00000030397	ECPAS (ENSOCUG00000004268)	ENSOCUG00000036935	LPAR1 (ENSOCUG00000026842) #8	MUSK (ENSOCUG00000017885) #9	SVEP1 (ENSOCUG00000016227) #10	ENSOCUG00000029370	TXN (ENSOCUG00000030643) #13	C9orf152 (ENSOCUG00000025279) #14	ENSOCUG00000025387 #16	PTPN3 (ENSOCUG00000001034) #17	ENSOCUG00000039438	EPB41L4B (ENSOCUG00000016177) #19	FRRS1L (ENSOCUG00000014570) #20	TMEM245 (ENSOCUG00000001887) #21	CTNNAL1 (ENSOCUG00000022183) #22	ABITRAM (ENSOCUG00000001882) #23	ELP1 (ENSOCUG00000001868) #24	ACTL7A (ENSOCUG00000011656) #25	ACTL7B (ENSOCUG00000015782) #26	ENSOCUG00000036004	ENSOCUG00000031317	ENSOCUG00000005904 #27	RAD23B (ENSOCUG00000007316) #28	ZNF462 (ENSOCUG00000012546) #29	FKTN (ENSOCUG00000005809) #32	TAL2 (ENSOCUG00000038140) #31	FSD1L (ENSOCUG00000023297) #33	SLC44A1 (ENSOCUG00000005946) #34	NIPSNAP3A (ENSOCUG00000007880) #37	ABCA1 (ENSOCUG00000009279) #35
Pika	MODERN SPECIES	2065							SVEP1 (ENSOPRG00000013832) #10	TXNDC8 (ENSOPRG00000013819)	TXN (ENSOPRG00000013805) #13	C9orf152 (ENSOPRG00000013799) #14	PALM2AKAP2 (ENSOPRG00000013775) #15	PTPN3 (ENSOPRG00000013741) #17	EPB41L4B (ENSOPRG00000013700) #19	FRRS1L (ENSOPRG00000013686) #20	TMEM245 (ENSOPRG00000013644) #21	CTNNAL1 (ENSOPRG00000013604) #22	ABITRAM (ENSOPRG00000013588) #23	ELP1 (ENSOPRG00000013519) #24	ACTL7B (ENSOPRG00000013495) #26
Tree shrew	MODERN SPECIES	1726															ENSTBEG00000005637 #21	CTNNAL1 (ENSTBEG00000005204) #22	ABITRAM (ENSTBEG00000004984) #23	ELP1 (ENSTBEG00000004131) #24
Primates	ANCESTRAL SPECIES	9	ENSGT00940000162615	ENSGT00940000153612.A	ENSGT01040000240406.A.b.b	ENSGT01050000244941.A #8	ENSGT00940000158226 #9	ENSGT00940000156061 #10	ENSGT00940000162445	ENSGT00940000154259.l #13	ENSGT00390000005322 #14	ENSGT00930000151059 #15	ENSGT00940000161837 #16	ENSGT00940000157888 #17	ENSGT00940000158331 #19	ENSGT00940000159043 #20	ENSGT00390000001667 #21	ENSGT01030000234543.F #22	ENSGT00450000040303 #23	ENSGT00390000013344 #24	ENSGT00940000162158 #25	ENSGT00940000162582 #26	ENSGT00940000156229 #27	ENSGT00390000012078.b #28	ENSGT00940000156411 #29	ENSGT00390000018845.e #30	ENSGT00940000160867 #31	ENSGT00390000014471 #32	ENSGT00940000157979 #33	ENSGT00940000157174 #34	ENSGT00940000154658.b #35	ENSGT00950000183018.b.k.b ##37	ENSGT00950000183018.b.k.a #37
Haplorrhini	ANCESTRAL SPECIES	9	ENSGT00940000162615	ENSGT00940000153612.A	ENSGT01040000240406.A.b.b	ENSGT01050000244941.A #8	ENSGT00940000158226 #9	ENSGT00940000156061 #10	ENSGT00940000162445	ENSGT00940000154259.l #13	ENSGT00390000005322 #14	ENSGT00930000151059 #15	ENSGT00940000161837 #16	ENSGT00940000157888 #17	ENSGT00940000158331 #19	ENSGT00940000159043 #20	ENSGT00390000001667 #21	ENSGT01030000234543.F #22	ENSGT00450000040303 #23	ENSGT00390000013344 #24	ENSGT00940000162158 #25	ENSGT00940000162582 #26	ENSGT00940000156229 #27	ENSGT00390000012078.b #28	ENSGT00940000156411 #29	ENSGT00390000018845.e #30	ENSGT00940000160867 #31	ENSGT00390000014471 #32	ENSGT00940000157979 #33	ENSGT00940000157174 #34	ENSGT00940000154658.b #35	ENSGT00950000183018.b.k.b ##37	ENSGT00950000183018.b.k.a #37
Tarsier	MODERN SPECIES	7037												PTPN3 (ENSTSYG00000007198) #17	EPB41L4B (ENSTSYG00000000137) #19	FRRS1L (ENSTSYG00000000247) #20	TMEM245 (ENSTSYG00000005554) #21	CTNNAL1 (ENSTSYG00000009255) #22	FAM206A (ENSTSYG00000009241) #23	ELP1 (ENSTSYG00000009218) #24	PTGS2 (ENSTSYG00000012389)	PDC (ENSTSYG00000003238)	CUNH1orf27 (ENSTSYG00000011439)	TPR (ENSTSYG00000011405)	ENSTSYG00000026550	HMCN1 (ENSTSYG00000012240)	ENSTSYG00000033615
Simiiformes	ANCESTRAL SPECIES	11	ENSGT00940000162615	ENSGT00940000153612.A	ENSGT01040000240406.A.b.b	ENSGT01050000244941.A.q.b #8	ENSGT00940000158226 #9	ENSGT00940000156061 #10	ENSGT00940000162445	ENSGT00940000154259.l.c.a #13	ENSGT00390000005322 #14	ENSGT00930000151059 #15	ENSGT00940000161837 #16	ENSGT00940000157888 #17	ENSGT00940000158331 #19	ENSGT00940000159043 #20	ENSGT00390000001667 #21	ENSGT01030000234543.F #22	ENSGT00450000040303 #23	ENSGT00390000013344 #24	ENSGT00940000162158 #25	ENSGT00940000162582 #26	ENSGT00940000156229 #27	ENSGT00390000012078.b #28	ENSGT00940000156411 #29	ENSGT00390000018845.e #30	ENSGT00940000160867 #31	ENSGT00390000014471 #32	ENSGT00940000157979 #33	ENSGT00910000146916	ENSGT00940000157174 #34	ENSGT00940000154658.b #35	ENSGT00950000183018.b.k.b ##37
Platyrrhini	ANCESTRAL SPECIES	8	ENSGT00940000162615	ENSGT00940000153612.A	ENSGT01040000240406.A.b.b	ENSGT01050000244941.A.q.a.b #8	ENSGT00940000158226 #9	ENSGT00940000156061 #10	ENSGT00940000162445	ENSGT00940000154259.k.a.b ##13	ENSGT00390000005322 #14	ENSGT00930000151059 #15	ENSGT00940000161837 #16	ENSGT00940000157888 #17	ENSGT00940000158331 #19	ENSGT00940000159043 #20	ENSGT00390000001667 #21	ENSGT01030000234543.F #22	ENSGT00450000040303 #23	ENSGT00390000013344 #24	ENSGT00940000162158 #25	ENSGT00940000162582 #26	ENSGT00940000156229.u #27	ENSGT00390000012078.b #28	ENSGT00940000156411 #29	ENSGT00390000018845.e #30	ENSGT00940000160867 #31	ENSGT00390000014471 #32	ENSGT00940000157979 #33	ENSGT00910000146916	ENSGT00940000157174 #34	ENSGT00940000154658.b #35	ENSGT00950000183018.b.k.b ##37
Cebidae	ANCESTRAL SPECIES	7	ENSGT00940000162615	ENSGT00940000153612.A	ENSGT01040000240406.A.b.b	ENSGT01050000244941.A.q.a.b #8	ENSGT00940000158226 #9	ENSGT00940000156061 #10	ENSGT00940000162445	ENSGT00940000154259.k.a.b ##13	ENSGT00390000005322 #14	ENSGT00930000151059 #15	ENSGT00940000161837 #16	ENSGT00940000157888 #17	ENSGT00940000158331 #19	ENSGT00940000159043 #20	ENSGT00390000001667 #21	ENSGT01030000234543.F #22	ENSGT00450000040303 #23	ENSGT00390000013344 #24	ENSGT00940000162158 #25	ENSGT00940000162582 #26	ENSGT00940000156229.u #27	ENSGT00390000012078.b #28	ENSGT00940000156411 #29	ENSGT00390000018845.e #30	ENSGT00940000160867 #31	ENSGT00390000014471 #32	ENSGT00940000157979 #33	ENSGT00910000146916	ENSGT00940000157174 #34	ENSGT00940000154658.b #35	ENSGT00950000183018.b.k.b ##37
Marmoset	MODERN SPECIES		OR2K2 (ENSCJAG00000017494)	ENSCJAG00000084240	ENSCJAG00000087206	LPAR1 (ENSCJAG00000017478) #8	MUSK (ENSCJAG00000017434) #9	ENSCJAG00000070199	SVEP1 (ENSCJAG00000017337) #10	TXN (ENSCJAG00000017321) ##13	C9orf152 (ENSCJAG00000078080) #14	PALM2AKAP2 (ENSCJAG00000048660) #15	PTPN3 (ENSCJAG00000017223) #17	EPB41L4B (ENSCJAG00000017184) #19	FRRS1L (ENSCJAG00000017183) #20	ENSCJAG00000082132	TMEM245 (ENSCJAG00000017154) #21	CTNNAL1 (ENSCJAG00000017065) #22	ABITRAM (ENSCJAG00000038185) #23	ENSCJAG00000016966 #24	ENSCJAG00000086076 #25	ACTL7B (ENSCJAG00000047256) #26	ENSCJAG00000082635	ENSCJAG00000085762	ENSCJAG00000022553	ENSCJAG00000080939	ENSCJAG00000078202	KLF4 (ENSCJAG00000016955) #27	ENSCJAG00000016908 #28	ENSCJAG00000080716	ZNF462 (ENSCJAG00000016879) #29	ENSCJAG00000077394	ENSCJAG00000083978
Cebidae_a	ANCESTRAL SPECIES	14	ENSGT00940000154810.c	ENSGT00940000162615	ENSGT00940000153612.A	ENSGT01050000244941.A.q.a.b #8	ENSGT00940000158226 #9	ENSGT00940000156061 #10	ENSGT00940000162445	ENSGT00940000154259.k.a.b ##13	ENSGT00390000005322 #14	ENSGT00930000151059 #15	ENSGT00940000161837 #16	ENSGT00940000157888 #17	ENSGT00940000158331 #19	ENSGT00940000159043 #20	ENSGT00390000001667 #21	ENSGT01030000234543.F #22	ENSGT00450000040303 #23	ENSGT00390000013344 #24	ENSGT00940000162158 #25	ENSGT00940000156229.u #27	ENSGT00390000012078.b #28	ENSGT00940000156411 #29	ENSGT00390000018845.e #30	ENSGT00940000160867 #31	ENSGT00390000014471 #32	ENSGT00940000157979 #33	ENSGT00910000146916	ENSGT00940000157174 #34	ENSGT00940000154658.b #35	ENSGT00950000183018.b.k.b ##37	ENSGT00950000183018.b.k.a #37
Capuchin	MODERN SPECIES	244												PTPN3 (ENSCCAG00000032931) #17	EPB41L4B (ENSCCAG00000022655) #19	FRRS1L (ENSCCAG00000032250) #20	TMEM245 (ENSCCAG00000018943) #21	CTNNAL1 (ENSCCAG00000035032) #22	ABITRAM (ENSCCAG00000009952) #23	ELP1 (ENSCCAG00000026339) #24	ACTL7A (ENSCCAG00000018348) #25	ENSCCAG00000024109	KLF4 (ENSCCAG00000034894) #27	RAD23B (ENSCCAG00000033669) #28	ZNF462 (ENSCCAG00000015108) #29
Bolivian squirrel monkey	MODERN SPECIES	55	ZNF483 (ENSSBOG00000017749)	ECPAS (ENSSBOG00000027524)	ENSSBOG00000025640 #8	MUSK (ENSSBOG00000020716) #9	SVEP1 (ENSSBOG00000025875) #10	TXNDC8 (ENSSBOG00000034687)	ENSSBOG00000032678 ##13	C9orf152 (ENSSBOG00000034426) #14	PALM2AKAP2 (ENSSBOG00000033459) #15	ENSSBOG00000007442	ENSSBOG00000018988	PTPN3 (ENSSBOG00000036194) #17	ENSSBOG00000029117 #19	FRRS1L (ENSSBOG00000022321) #20	TMEM245 (ENSSBOG00000028290) #21	CTNNAL1 (ENSSBOG00000021875) #22	ABITRAM (ENSSBOG00000024725) #23	ELP1 (ENSSBOG00000022496) #24	ACTL7A (ENSSBOG00000019887) #25	KLF4 (ENSSBOG00000020657) #27	ENSSBOG00000024154 #28	ZNF462 (ENSSBOG00000032170) #29	TMEM38B (ENSSBOG00000026808) #30	FKTN (ENSSBOG00000033576) #32	ENSSBOG00000025346	FSD1L (ENSSBOG00000034007) #33	ENSSBOG00000024761	SLC44A1 (ENSSBOG00000018945) #34	ABCA1 (ENSSBOG00000035244) #35	NIPSNAP3B (ENSSBOG00000031338) ##37	NIPSNAP3A (ENSSBOG00000025285) #37
Mas night monkey	MODERN SPECIES	604	OR2K2 (ENSANAG00000034187)	ENSANAG00000024135 #8	MUSK (ENSANAG00000021572) #9	SVEP1 (ENSANAG00000031704) #10	TXNDC8 (ENSANAG00000031088)	ENSANAG00000022759 ##13	ENSANAG00000030333	C9orf152 (ENSANAG00000029470) #14	PALM2AKAP2 (ENSANAG00000025702) #15	ENSANAG00000037564	ENSANAG00000034520	PTPN3 (ENSANAG00000037600) #17	EPB41L4B (ENSANAG00000029455) #19	FRRS1L (ENSANAG00000029146) #20	TMEM245 (ENSANAG00000032340) #21	CTNNAL1 (ENSANAG00000032279) #22	ABITRAM (ENSANAG00000038404) #23	ENSANAG00000037326	ELP1 (ENSANAG00000033165) #24	ENSANAG00000020202	KLF4 (ENSANAG00000034670) #27	RAD23B (ENSANAG00000021451) #28	ZNF462 (ENSANAG00000035393) #29	TMEM38B (ENSANAG00000019169) #30	TAL2 (ENSANAG00000005973) #31	FKTN (ENSANAG00000031912) #32	FSD1L (ENSANAG00000026736) #33	ENSANAG00000020796	SLC44A1 (ENSANAG00000027494) #34	ENSANAG00000019975	ABCA1 (ENSANAG00000033387) #35
Catarrhini	ANCESTRAL SPECIES	13	ENSGT00940000153612.A	ENSGT01040000240406.A.b.b	ENSGT01050000244941.A.q.b #8	ENSGT00940000158226 #9	ENSGT00940000156061 #10	ENSGT00940000162445	ENSGT00940000154259.l.c.a #13	ENSGT00390000005322 #14	ENSGT00930000151059 #15	ENSGT00940000161837 #16	ENSGT00940000153341.b.p.a.b.b.b.b.g.b	ENSGT00940000157888 #17	ENSGT00940000158331 #19	ENSGT00940000159043 #20	ENSGT00390000001667 #21	ENSGT01030000234543.F #22	ENSGT00450000040303.c #23	ENSGT00390000013344 #24	ENSGT00940000162158 #25	ENSGT00940000162582 #26	ENSGT00940000156229 #27	ENSGT00390000012078.b.c #28	ENSGT00940000156411 #29	ENSGT00390000018845.e #30	ENSGT00940000160867 #31	ENSGT00390000014471 #32	ENSGT00940000157979 #33	ENSGT00910000146916	ENSGT00940000157174 #34	ENSGT00940000154658.b #35	ENSGT00950000183018.b.k.b ##37
Hominoidea	ANCESTRAL SPECIES	19	ENSGT00940000153612.A	ENSGT01040000240406.A.b.b	ENSGT01050000244941.A.r #8	ENSGT00940000158226 #9	ENSGT00940000156061 #10	ENSGT00940000162445	ENSGT00940000154259.k.b.a ##13	ENSGT00390000005322 #14	ENSGT00930000151059 #15	ENSGT00940000161837 #16	ENSGT00940000153341.b.p.a.b.b.b.b.g.b	ENSGT00940000157888 #17	ENSGT00940000158331 #19	ENSGT00940000159043 #20	ENSGT00390000001667 #21	ENSGT01030000234543.F #22	ENSGT00450000040303.c #23	ENSGT00390000013344 #24	ENSGT00940000162158 #25	ENSGT00940000162582 #26	ENSGT00940000156229 #27	ENSGT00390000012078.b.c #28	ENSGT00940000156411 #29	ENSGT00390000018845.e #30	ENSGT00940000160867 #31	ENSGT00390000014471 #32	ENSGT00940000157979 #33	ENSGT00910000146916	ENSGT00940000157174 #34	ENSGT00940000154658.b #35	ENSGT00950000183018.b.k.b ##37
Gibbon	MODERN SPECIES	10	ZNF483 (ENSNLEG00000017483)	ECPAS (ENSNLEG00000017480)	LPAR1 (ENSNLEG00000017476) #8	MUSK (ENSNLEG00000017469) #9	SVEP1 (ENSNLEG00000017463) #10	ENSNLEG00000033326	ENSNLEG00000032849 ##13	C9orf152 (ENSNLEG00000035418) #14	PALM2AKAP2 (ENSNLEG00000017455) #15	ENSNLEG00000035302 #16	ENSNLEG00000028962	PTPN3 (ENSNLEG00000017436) #17	EPB41L4B (ENSNLEG00000017431) #19	FRRS1L (ENSNLEG00000017427) #20	TMEM245 (ENSNLEG00000017413) #21	CTNNAL1 (ENSNLEG00000030323) #22	ABITRAM (ENSNLEG00000017379) #23	ELP1 (ENSNLEG00000017329) #24	ACTL7A (ENSNLEG00000018973) #25	ACTL7B (ENSNLEG00000018972) #26	ENSNLEG00000027120	ENSNLEG00000017327 #27	ENSNLEG00000017326	RAD23B (ENSNLEG00000017319) #28	ZNF462 (ENSNLEG00000017310) #29	TMEM38B (ENSNLEG00000017305) #30	ENSNLEG00000031329	TAL2 (ENSNLEG00000018969) #31	FKTN (ENSNLEG00000017300) #32	FSD1L (ENSNLEG00000017277) #33	ENSNLEG00000030492
Hominidae	ANCESTRAL SPECIES	10	ENSGT00940000162615	ENSGT00940000153612.A	ENSGT01040000240406.A.b.b	ENSGT01050000244941.A.r #8	ENSGT00940000158226 #9	ENSGT00940000156061 #10	ENSGT00940000162445	ENSGT00940000154259.k.b.a ##13	ENSGT00390000005322 #14	ENSGT00930000151059 #15	ENSGT00940000161837 #16	ENSGT00940000157888 #17	ENSGT00940000158331 #19	ENSGT00940000159043 #20	ENSGT00390000001667 #21	ENSGT01030000234543.F #22	ENSGT00450000040303.c #23	ENSGT00390000013344 #24	ENSGT00940000162158 #25	ENSGT00940000162582 #26	ENSGT00940000156229 #27	ENSGT00390000012078.b.c #28	ENSGT00940000156411 #29	ENSGT00390000018845.e #30	ENSGT00940000160867 #31	ENSGT00390000014471 #32	ENSGT00940000157979 #33	ENSGT00940000157174 #34	ENSGT00940000154658.b #35	ENSGT00950000183018.b.k.b ##37	ENSGT00950000183018.b.k.a #37
Orangutan	MODERN SPECIES	22	DNAJC25 (ENSPPYG00000019500)	PTGR1 (ENSPPYG00000019499)	ENSPPYG00000019498	ECPAS (ENSPPYG00000019497)	LPAR1 (ENSPPYG00000019495) #8	MUSK (ENSPPYG00000019494) #9	SVEP1 (ENSPPYG00000019493) #10	ENSPPYG00000019492	TXN (ENSPPYG00000019491) ##13	C9orf152 (ENSPPYG00000019490) #14	PALM2AKAP2 (ENSPPYG00000019489) #15	PTPN3 (ENSPPYG00000019488) #17	EPB41L4B (ENSPPYG00000019487) #19	FRRS1L (ENSPPYG00000019486) #20	TMEM245 (ENSPPYG00000019485) #21	CTNNAL1 (ENSPPYG00000019484) #22	ABITRAM (ENSPPYG00000019483) #23	ELP1 (ENSPPYG00000019482) #24	ACTL7A (ENSPPYG00000019481) #25	ACTL7B (ENSPPYG00000019480) #26	ENSPPYG00000032857	ENSPPYG00000019478 #27	RAD23B (ENSPPYG00000019477) #28	ZNF462 (ENSPPYG00000019476) #29	ENSPPYG00000031352	TMEM38B (ENSPPYG00000019474) #32	FSD1L (ENSPPYG00000019471) #33	SLC44A1 (ENSPPYG00000019470) #34	ABCA1 (ENSPPYG00000019469) #35	NIPSNAP3A (ENSPPYG00000019468) #37	OR13C9 (ENSPPYG00000034640)
Homo/Pan/Gorilla group	DUPLICATION
Homo/Pan/Gorilla group	ANCESTRAL SPECIES	10	ENSGT00940000153612.A	ENSGT01040000240406.A.b.b	ENSGT01050000244941.A.r #8	ENSGT00940000158226 #9	ENSGT00940000156061 #10	ENSGT00940000162445	ENSGT00940000154259.k.b.a ##13	ENSGT00390000005322 #14	ENSGT00930000151059 #15	ENSGT00940000161837 #16	ENSGT00940000165203.j	ENSGT00940000157888 #17	ENSGT00940000158331 #19	ENSGT00940000159043 #20	ENSGT00390000001667 #21	ENSGT01030000234543.F.s #22	ENSGT00450000040303.c #23	ENSGT00390000013344 #24	ENSGT00940000162158 #25	ENSGT00940000162582 #26	ENSGT00940000156229 #27	ENSGT00390000012078.b.c #28	ENSGT01050000244891.A.j.a.a	ENSGT00940000156411 #29	ENSGT00390000018845.e #30	ENSGT00940000160867 #31	ENSGT00390000014471 #32	ENSGT00940000157979 #33	ENSGT00940000157174 #34	ENSGT00940000154658.b #35	ENSGT00950000183018.b.k.b ##37
Gorilla	MODERN SPECIES	22	LPAR1 (ENSGGOG00000001749) #8	MUSK (ENSGGOG00000015657) #9	SVEP1 (ENSGGOG00000004135) #10	ENSGGOG00000027079	TXN (ENSGGOG00000006925) ##13	C9orf152 (ENSGGOG00000013066) #14	PALM2-AKAP2 (ENSGGOG00000010137) #15	ENSGGOG00000026428	ENSGGOG00000040506	ENSGGOG00000040883 #16	ENSGGOG00000023840	PTPN3 (ENSGGOG00000024081) #17	EPB41L4B (ENSGGOG00000004192) #19	FRRS1L (ENSGGOG00000009128) #20	TMEM245 (ENSGGOG00000001950) #21	CTNNAL1 (ENSGGOG00000004228) #22	ABITRAM (ENSGGOG00000004222) #23	ELP1 (ENSGGOG00000004204) #24	ACTL7A (ENSGGOG00000025495) #25	ACTL7B (ENSGGOG00000008278) #26	KLF4 (ENSGGOG00000000096) #27	RAD23B (ENSGGOG00000002511) #28	ENSGGOG00000042705	ZNF462 (ENSGGOG00000008882) #29	ENSGGOG00000028211	ENSGGOG00000042323	ENSGGOG00000043779	TMEM38B (ENSGGOG00000007210) #30	TAL2 (ENSGGOG00000006780) #31	FKTN (ENSGGOG00000005619) #32	FSD1L (ENSGGOG00000026946) #33
Homo/Pan group	ANCESTRAL SPECIES	16	ENSGT00940000153612.A	ENSGT01040000240406.A.b.b	ENSGT01050000244941.A.r #8	ENSGT00940000158226 #9	ENSGT00940000156061 #10	ENSGT00940000162445	ENSGT00940000154259.k.b.a ##13	ENSGT00390000005322 #14	ENSGT00930000151059 #15	ENSGT00940000161837 #16	ENSGT00940000165203.j	ENSGT00940000157888 #17	ENSGT00940000158331 #19	ENSGT00940000159043 #20	ENSGT00390000001667 #21	ENSGT01030000234543.F.s #22	ENSGT00450000040303.c #23	ENSGT00390000013344 #24	ENSGT00940000162158 #25	ENSGT00940000162582 #26	ENSGT00940000156229 #27	ENSGT00390000012078.b.c #28	ENSGT01050000244891.A.j.a.a	ENSGT00940000156411 #29	ENSGT00390000018845.e #30	ENSGT00940000160867 #31	ENSGT00390000014471 #32	ENSGT00940000157979 #33	ENSGT00940000157174 #34	ENSGT00940000154658.b #35	ENSGT00950000183018.b.k.b ##37
Human	MODERN SPECIES	21	PTGR1 (ENSG00000106853)	ZNF483 (ENSG00000173258)	ECPAS (ENSG00000136813)	OR2K2 (ENSG00000171133)	LPAR1 (ENSG00000198121) #8	MUSK (ENSG00000030304) #9	SVEP1 (ENSG00000165124) #10	TXNDC8 (ENSG00000204193)	TXN (ENSG00000136810) ##13	C9orf152 (ENSG00000188959) #14	PALM2AKAP2 (ENSG00000157654) #15	PTPN3 (ENSG00000070159) #17	EPB41L4B (ENSG00000095203) #19	FRRS1L (ENSG00000260230) #20	TMEM245 (ENSG00000106771) #21	CTNNAL1 (ENSG00000119326) #22	ABITRAM (ENSG00000119328) #23	ELP1 (ENSG00000070061) #24	ACTL7A (ENSG00000187003) #25	ACTL7B (ENSG00000148156) #26	KLF4 (ENSG00000136826) #27	RAD23B (ENSG00000119318) #28	ZNF462 (ENSG00000148143) #29	TMEM38B (ENSG00000095209) #30	TAL2 (ENSG00000186051) #31	FKTN (ENSG00000106692) #32	FSD1L (ENSG00000106701) #33	SLC44A1 (ENSG00000070214) #34	ABCA1 (ENSG00000165029) #35	NIPSNAP3B (ENSG00000165028) ##37	NIPSNAP3A (ENSG00000136783) #37
Pan	ANCESTRAL SPECIES	18	ENSGT00940000153612.A	ENSGT01040000240406.A.b.b	ENSGT01050000244941.A.r #8	ENSGT00940000158226 #9	ENSGT00940000156061 #10	ENSGT00940000162445	ENSGT00940000154259.k.b.a ##13	ENSGT00390000005322 #14	ENSGT00930000151059 #15	ENSGT00940000161837 #16	ENSGT00940000165203.j	ENSGT00940000157888 #17	ENSGT00940000158331 #19	ENSGT00940000159043 #20	ENSGT00390000001667 #21	ENSGT01030000234543.F.s #22	ENSGT00450000040303.c #23	ENSGT00390000013344 #24	ENSGT00940000162158 #25	ENSGT00940000162582 #26	ENSGT00390000011943.a.a.a.a.b	ENSGT00940000165389	ENSGT00940000156229 #27	ENSGT00390000012078.b.c #28	ENSGT01050000244891.A.j.a.a	ENSGT00940000156411 #29	ENSGT00910000147109	ENSGT00390000018845.e #30	ENSGT00940000160867 #31	ENSGT00390000014471 #32	ENSGT00940000157979 #33
Chimpanzee	MODERN SPECIES	22	ZNF483 (ENSPTRG00000021253)	ECPAS (ENSPTRG00000021251)	OR2K2 (ENSPTRG00000021250)	LPAR1 (ENSPTRG00000021249) #8	MUSK (ENSPTRG00000021248) #9	SVEP1 (ENSPTRG00000021246) #10	TXNDC8 (ENSPTRG00000029162)	TXN (ENSPTRG00000021245) ##13	C9H9orf152 (ENSPTRG00000040638) #14	PALM2AKAP2 (ENSPTRG00000021242) #15	PALM2AKAP2 (ENSPTRG00000039394) #16	PTPN3 (ENSPTRG00000021240) #17	EPB41L4B (ENSPTRG00000021239) #19	FRRS1L (ENSPTRG00000021238) #20	TMEM245 (ENSPTRG00000021237) #21	CTNNAL1 (ENSPTRG00000021235) #22	ABITRAM (ENSPTRG00000021234) #23	ELP1 (ENSPTRG00000021233) #24	ACTL7A (ENSPTRG00000021232) #25	ACTL7B (ENSPTRG00000021231) #26	ENSPTRG00000052140	ENSPTRG00000050261	KLF4 (ENSPTRG00000021230) #27	RAD23B (ENSPTRG00000021229) #28	ENSPTRG00000043526	ZNF462 (ENSPTRG00000021228) #29	ENSPTRG00000051779	ENSPTRG00000047867	TMEM38B (ENSPTRG00000021226) #30	TAL2 (ENSPTRG00000021225) #31	FKTN (ENSPTRG00000021224) #32
Bonobo	MODERN SPECIES	22	LPAR1 (ENSPPAG00000039517) #8	ENSPPAG00000040204	MUSK (ENSPPAG00000027272) #9	SVEP1 (ENSPPAG00000030441) #10	ENSPPAG00000043556	TXN (ENSPPAG00000042345) ##13	C9orf152 (ENSPPAG00000037682) #14	ENSPPAG00000028864 #15	ENSPPAG00000041864 #16	ENSPPAG00000027455	PTPN3 (ENSPPAG00000043564) #17	EPB41L4B (ENSPPAG00000028167) #19	ENSPPAG00000043479 #20	TMEM245 (ENSPPAG00000042485) #21	ENSPPAG00000038805 #22	ENSPPAG00000012481 #22	ABITRAM (ENSPPAG00000028675) #23	ELP1 (ENSPPAG00000027510) #24	ACTL7A (ENSPPAG00000007108) #25	ACTL7B (ENSPPAG00000021452) #26	ENSPPAG00000035498	ENSPPAG00000030655	KLF4 (ENSPPAG00000015192) #27	RAD23B (ENSPPAG00000041162) #28	ENSPPAG00000027680	ENSPPAG00000032267	ZNF462 (ENSPPAG00000030092) #29	ENSPPAG00000007053	TMEM38B (ENSPPAG00000033497) #30	TAL2 (ENSPPAG00000004739) #31	FKTN (ENSPPAG00000027627) #32
Homo/Pan/Gorilla group	ANCESTRAL SPECIES																	ENSGT01030000234543.F.t #22
Homo/Pan group	ANCESTRAL SPECIES																	ENSGT01030000234543.F.t #22
Pan	ANCESTRAL SPECIES																	ENSGT01030000234543.F.t #22
Bonobo	MODERN SPECIES	22	OR2K2 (ENSPPAG00000008245)	LPAR1 (ENSPPAG00000039517) #8	ENSPPAG00000040204	MUSK (ENSPPAG00000027272) #9	SVEP1 (ENSPPAG00000030441) #10	ENSPPAG00000043556	TXN (ENSPPAG00000042345) ##13	C9orf152 (ENSPPAG00000037682) #14	ENSPPAG00000028864 #15	ENSPPAG00000041864 #16	ENSPPAG00000027455	PTPN3 (ENSPPAG00000043564) #17	EPB41L4B (ENSPPAG00000028167) #19	ENSPPAG00000043479 #20	TMEM245 (ENSPPAG00000042485) #21	ENSPPAG00000038805 #22	ENSPPAG00000012481 #22	ABITRAM (ENSPPAG00000028675) #23	ELP1 (ENSPPAG00000027510) #24	ACTL7A (ENSPPAG00000007108) #25	ACTL7B (ENSPPAG00000021452) #26	ENSPPAG00000035498	ENSPPAG00000030655	KLF4 (ENSPPAG00000015192) #27	RAD23B (ENSPPAG00000041162) #28	ENSPPAG00000027680	ENSPPAG00000032267	ZNF462 (ENSPPAG00000030092) #29	ENSPPAG00000007053	TMEM38B (ENSPPAG00000033497) #30	TAL2 (ENSPPAG00000004739) #31
Cercopithecidae	ANCESTRAL SPECIES	9	ENSGT00940000153612.A	ENSGT01040000240406.A.b.b	ENSGT01050000244941.A.q.b #8	ENSGT00940000158226 #9	ENSGT00940000156061 #10	ENSGT00940000162445	ENSGT00940000154259.l.c.a.b.b #13	ENSGT00390000005322 #14	ENSGT00930000151059 #15	ENSGT00940000161837 #16	ENSGT00940000153341.b.p.a.b.b.b.b.g.b	ENSGT00940000157888 #17	ENSGT00940000158331 #19	ENSGT00940000159043 #20	ENSGT00390000001667 #21	ENSGT01030000234543.F #22	ENSGT00450000040303.c #23	ENSGT00390000013344 #24	ENSGT00940000162158 #25	ENSGT00940000162582 #26	ENSGT00940000156229 #27	ENSGT00390000012078.b.c #28	ENSGT00940000156411 #29	ENSGT00950000182976.b.a.k	ENSGT00390000018845.e #30	ENSGT00940000160867 #31	ENSGT00390000014471 #32	ENSGT00940000157979 #33	ENSGT00910000146916	ENSGT00940000157174 #34	ENSGT00940000154658.b #35
Rhinopithecus	ANCESTRAL SPECIES	166		ENSGT01050000244941.A.q.b #8	ENSGT00940000158226 #9	ENSGT00940000156061 #10	ENSGT00940000162445	ENSGT00940000154259.l.c.a.b.a #13	ENSGT00940000154259.l.c.a.b.b #13	ENSGT00390000005322 #14	ENSGT00930000151059 #15	ENSGT00940000161837 #16	ENSGT00940000153341.b.p.a.b.b.b.b.g.b	ENSGT00940000157888 #17	ENSGT00940000158331 #19	ENSGT00940000159043 #20	ENSGT00390000001667 #21	ENSGT01030000234543.F #22	ENSGT00450000040303.c #23	ENSGT00390000013344 #24	ENSGT00940000162158 #25	ENSGT00940000162582 #26	ENSGT00940000156229 #27	ENSGT00390000012078.b.c #28	ENSGT00940000156411 #29	ENSGT00390000018845.e #30	ENSGT00950000182976.b.a.k	ENSGT00940000160867 #31	ENSGT00390000014471 #32	ENSGT00940000157979 #33	ENSGT00910000146916	ENSGT00940000157174 #34	ENSGT00940000154658.b #35
Golden snub-nosed monkey	MODERN SPECIES	1230				ENSRROG00000033771 #8	MUSK (ENSRROG00000011014) #9	SVEP1 (ENSRROG00000042701) #10	TXNDC8 (ENSRROG00000034846)	ENSRROG00000036869 #13	C9orf152 (ENSRROG00000039930) #14	PALM2AKAP2 (ENSRROG00000010883) #15	ENSRROG00000030168	PTPN3 (ENSRROG00000030615) #17	EPB41L4B (ENSRROG00000032993) #19	FRRS1L (ENSRROG00000022515) #20	TMEM245 (ENSRROG00000043467) #21	CTNNAL1 (ENSRROG00000035611) #22	ABITRAM (ENSRROG00000043008) #23	ELP1 (ENSRROG00000043925) #24	ACTL7A (ENSRROG00000025001) #25	ACTL7B (ENSRROG00000008823) #26
Black snub-nosed monkey	DUPLICATION
Black snub-nosed monkey	MODERN SPECIES	550																ENSRBIG00000034292 #22	ENSRBIG00000032896 #23	ELP1 (ENSRBIG00000035292) #24	ACTL7A (ENSRBIG00000037801) #25	ACTL7B (ENSRBIG00000029030) #26	KLF4 (ENSRBIG00000017443) #27	RAD23B (ENSRBIG00000044657) #28	ZNF462 (ENSRBIG00000044832) #29	TMEM38B (ENSRBIG00000040378) #30	ENSRBIG00000044041	FKTN (ENSRBIG00000035993) #32	FSD1L (ENSRBIG00000031184) #33	ENSRBIG00000015716	SLC44A1 (ENSRBIG00000036928) #34	ABCA1 (ENSRBIG00000035569) #35	NIPSNAP3A (ENSRBIG00000024780) #37
Black snub-nosed monkey	MODERN SPECIES	2500												PTPN3 (ENSRBIG00000040891) #17	EPB41L4B (ENSRBIG00000043023) #19	FRRS1L (ENSRBIG00000039628) #20	TMEM245 (ENSRBIG00000043079) #21	ENSRBIG00000039025 #22
Cercopithecinae	ANCESTRAL SPECIES	12	ENSGT00940000153612.A	ENSGT01040000240406.A.b.b	ENSGT01050000244941.A.q.b #8	ENSGT00940000158226 #9	ENSGT00940000156061 #10	ENSGT00940000162445	ENSGT00940000154259.l.c.a.b.b #13	ENSGT00390000005322 #14	ENSGT00930000151059 #15	ENSGT00940000161837 #16	ENSGT00940000153341.b.p.a.b.b.b.b.g.b	ENSGT00940000157888 #17	ENSGT00940000158331 #19	ENSGT00940000159043 #20	ENSGT00390000001667 #21	ENSGT01030000234543.F #22	ENSGT00450000040303.c #23	ENSGT00390000013344 #24	ENSGT00940000162158 #25	ENSGT00940000162582 #26	ENSGT00940000156229 #27	ENSGT00390000012078.b.c #28	ENSGT00940000156411 #29	ENSGT00950000182976.b.a.k	ENSGT00390000018845.e #30	ENSGT00940000160867 #31	ENSGT00390000014471 #32	ENSGT00940000157979 #33	ENSGT00910000146916	ENSGT00940000157174 #34	ENSGT00940000154658.b #35
Vervet Monkey	MODERN SPECIES	3	PTGR1 (ENSCSAG00000012179)	ZNF483 (ENSCSAG00000012168)	ECPAS (ENSCSAG00000012157)	OR2K2 (ENSCSAG00000000469)	LPAR1 (ENSCSAG00000012120) #8	ENSCSAG00000012109 #9	SVEP1 (ENSCSAG00000012026) #10	TXNDC8 (ENSCSAG00000011773)	ENSCSAG00000011770 #13	C9orf152 (ENSCSAG00000011765) #14	PALM2AKAP2 (ENSCSAG00000011760) #15	PTPN3 (ENSCSAG00000011753) #17	EPB41L4B (ENSCSAG00000011705) #19	FRRS1L (ENSCSAG00000011596) #20	TMEM245 (ENSCSAG00000011549) #21	CTNNAL1 (ENSCSAG00000011467) #22	ABITRAM (ENSCSAG00000011453) #23	ELP1 (ENSCSAG00000011447) #24	ACTL7A (ENSCSAG00000000468) #25	ACTL7B (ENSCSAG00000000467) #26	KLF4 (ENSCSAG00000011429) #27	RAD23B (ENSCSAG00000011420) #28	ZNF462 (ENSCSAG00000011406) #29	TMEM38B (ENSCSAG00000011397) #30	TAL2 (ENSCSAG00000000466) #31	FKTN (ENSCSAG00000011375) #32	FSD1L (ENSCSAG00000011329) #33	SLC44A1 (ENSCSAG00000011315) #34	ABCA1 (ENSCSAG00000011297) #35	NIPSNAP3A (ENSCSAG00000011278) #37	ENSCSAG00000000465
Cercopithecinae_a	ANCESTRAL SPECIES	12	ENSGT00940000153612.A	ENSGT01040000240406.A.b.b	ENSGT01050000244941.A.q.b #8	ENSGT00940000158226 #9	ENSGT00940000156061 #10	ENSGT00940000162445	ENSGT00940000154259.l.c.a.b.b #13	ENSGT00390000005322 #14	ENSGT00930000151059 #15	ENSGT00940000161837 #16	ENSGT00940000153341.b.p.a.b.b.b.b.g.b	ENSGT00940000157888 #17	ENSGT00940000158331 #19	ENSGT00940000159043 #20	ENSGT00390000001667 #21	ENSGT01030000234543.F #22	ENSGT00450000040303.c #23	ENSGT00390000013344 #24	ENSGT00940000162158 #25	ENSGT00940000162582 #26	ENSGT00940000156229 #27	ENSGT00390000012078.b.c #28	ENSGT00940000156411 #29	ENSGT00950000182976.b.a.k	ENSGT00390000018845.e #30	ENSGT00940000160867 #31	ENSGT00390000014471.i #32	ENSGT00940000157979 #33	ENSGT00910000146916	ENSGT00940000157174 #34	ENSGT00940000154658.b #35
Macaca	ANCESTRAL SPECIES	10	ENSGT00940000153612.A	ENSGT01040000240406.A.b.b	ENSGT01050000244941.A.q.b #8	ENSGT00940000158226 #9	ENSGT00940000156061 #10	ENSGT00940000162445	ENSGT00940000154259.l.c.a.b.b #13	ENSGT00390000005322 #14	ENSGT00930000151059 #15	ENSGT00940000161837 #16	ENSGT00940000157888 #17	ENSGT00940000158331 #19	ENSGT00940000159043 #20	ENSGT00390000001667 #21	ENSGT00900000143523	ENSGT01030000234543.F #22	ENSGT00450000040303.c #23	ENSGT00390000013344 #24	ENSGT00940000162158 #25	ENSGT00940000162582 #26	ENSGT00940000156229 #27	ENSGT00390000012078.b.c #28	ENSGT00940000156411 #29	ENSGT00950000182976.b.a.k	ENSGT00390000018845.e #30	ENSGT00940000160867 #31	ENSGT00390000014471.i #32	ENSGT00940000157979 #33	ENSGT00910000146916	ENSGT00940000157174 #34	ENSGT00940000154658.b #35
Pig-tailed macaque	DUPLICATION
Pig-tailed macaque	MODERN SPECIES	567	ECPAS (ENSMNEG00000031283)	ENSMNEG00000044219 #8	MUSK (ENSMNEG00000045122) #9	SVEP1 (ENSMNEG00000030325) #10	TXNDC8 (ENSMNEG00000037908)	TXN (ENSMNEG00000044490) #13	C9orf152 (ENSMNEG00000036846) #14	PALM2AKAP2 (ENSMNEG00000034564) #15	ENSMNEG00000040101 #16	PTPN3 (ENSMNEG00000031178) #17	EPB41L4B (ENSMNEG00000039820) #19	FRRS1L (ENSMNEG00000036099) #20	TMEM245 (ENSMNEG00000044768) #21	ENSMNEG00000026789	ENSMNEG00000038591 #22	ENSMNEG00000042916 #22	ABITRAM (ENSMNEG00000005107) #23	ELP1 (ENSMNEG00000032258) #24	ACTL7A (ENSMNEG00000038152) #25	ACTL7B (ENSMNEG00000012729) #26	KLF4 (ENSMNEG00000032059) #27	RAD23B (ENSMNEG00000039434) #28	ZNF462 (ENSMNEG00000028404) #29	ENSMNEG00000032988	TMEM38B (ENSMNEG00000031505) #30	TAL2 (ENSMNEG00000028151) #31	ENSMNEG00000008885	FKTN (ENSMNEG00000033164) #32	FSD1L (ENSMNEG00000042664) #33	ENSMNEG00000028344	SLC44A1 (ENSMNEG00000043781) #34
Pig-tailed macaque	MODERN SPECIES	567	ZNF483 (ENSMNEG00000036887)	ECPAS (ENSMNEG00000031283)	ENSMNEG00000044219 #8	MUSK (ENSMNEG00000045122) #9	SVEP1 (ENSMNEG00000030325) #10	TXNDC8 (ENSMNEG00000037908)	TXN (ENSMNEG00000044490) #13	C9orf152 (ENSMNEG00000036846) #14	PALM2AKAP2 (ENSMNEG00000034564) #15	ENSMNEG00000040101 #16	PTPN3 (ENSMNEG00000031178) #17	EPB41L4B (ENSMNEG00000039820) #19	FRRS1L (ENSMNEG00000036099) #20	TMEM245 (ENSMNEG00000044768) #21	ENSMNEG00000026789	ENSMNEG00000038591 #22	ENSMNEG00000042916 #22	ABITRAM (ENSMNEG00000005107) #23	ELP1 (ENSMNEG00000032258) #24	ACTL7A (ENSMNEG00000038152) #25	ACTL7B (ENSMNEG00000012729) #26	KLF4 (ENSMNEG00000032059) #27	RAD23B (ENSMNEG00000039434) #28	ZNF462 (ENSMNEG00000028404) #29	ENSMNEG00000032988	TMEM38B (ENSMNEG00000031505) #30	TAL2 (ENSMNEG00000028151) #31	ENSMNEG00000008885	FKTN (ENSMNEG00000033164) #32	FSD1L (ENSMNEG00000042664) #33	ENSMNEG00000028344
Macaca_a	ANCESTRAL SPECIES	10	ENSGT01040000240406.A.b.b	ENSGT01050000244941.A.q.b #8	ENSGT00940000158226 #9	ENSGT00940000156061 #10	ENSGT00940000162445	ENSGT00940000154259.l.c.a.b.b #13	ENSGT00390000005322 #14	ENSGT00940000167556.b.b.a.b.a.a.a.b.b.b.b.a.b	ENSGT00930000151059 #15	ENSGT00940000153341.b.p.a.b.b.b.b.g.b	ENSGT00940000157888 #17	ENSGT00940000158331 #19	ENSGT00940000159043 #20	ENSGT00390000001667 #21	ENSGT00900000143523	ENSGT01030000234543.F #22	ENSGT00450000040303.c #23	ENSGT00390000013344 #24	ENSGT00940000162158 #25	ENSGT00940000162582 #26	ENSGT00940000156229 #27	ENSGT00390000012078.b.c #28	ENSGT00940000156411 #29	ENSGT00390000018845.e #30	ENSGT00390000014471.i #32	ENSGT00940000157979 #33	ENSGT00910000146916	ENSGT00940000157174 #34	ENSGT00940000167556.b.b.a.b.a.a.a.b.a.b.a.a.b.b	ENSGT00940000154658.b #35	ENSGT00950000183018.b.k.b ##37
Crab-eating macaque	MODERN SPECIES	6	ENSMFAG00000034461 #8	MUSK (ENSMFAG00000030822) #9	SVEP1 (ENSMFAG00000043533) #10	ENSMFAG00000047934	TXNDC8 (ENSMFAG00000031905)	ENSMFAG00000049080 #13	C9orf152 (ENSMFAG00000048389) #14	ENSMFAG00000059732	PALM2AKAP2 (ENSMFAG00000004557) #15	ENSMFAG00000039297	PTPN3 (ENSMFAG00000035170) #17	EPB41L4B (ENSMFAG00000039720) #19	FRRS1L (ENSMFAG00000013386) #20	TMEM245 (ENSMFAG00000026452) #21	ENSMFAG00000050759	CTNNAL1 (ENSMFAG00000017883) #22	ABITRAM (ENSMFAG00000036713) #23	ELP1 (ENSMFAG00000043210) #24	ACTL7A (ENSMFAG00000006946) #25	ACTL7B (ENSMFAG00000006984) #26	KLF4 (ENSMFAG00000035870) #27	RAD23B (ENSMFAG00000031929) #28	ZNF462 (ENSMFAG00000037841) #29	FKTN (ENSMFAG00000035942) #32	FSD1L (ENSMFAG00000000831) #33	ENSMFAG00000016897	SLC44A1 (ENSMFAG00000044299) #34	ENSMFAG00000053554	ABCA1 (ENSMFAG00000002145) #35	NIPSNAP3B (ENSMFAG00000033171) ##37	OR13C9 (ENSMFAG00000061784)
Rhesus	DUPLICATION
Rhesus	MODERN SPECIES	6	ECPAS (ENSMMUG00000016315)	OR2K2 (ENSMMUG00000064363)	LPAR1 (ENSMMUG00000006906) #8	MUSK (ENSMMUG00000007065) #9	SVEP1 (ENSMMUG00000047960) #10	ENSMMUG00000060086	ENSMMUG00000061204	TXNDC8 (ENSMMUG00000010325)	C15H9orf152 (ENSMMUG00000052156) #14	ENSMMUG00000058252	PALM2AKAP2 (ENSMMUG00000002361) #15	PTPN3 (ENSMMUG00000001250) #17	EPB41L4B (ENSMMUG00000017515) #19	FRRS1L (ENSMMUG00000017514) #20	TMEM245 (ENSMMUG00000000695) #21	CTNNAL1 (ENSMMUG00000000690) #22	ABITRAM (ENSMMUG00000053648) #23	ENSMMUG00000064066	ELP1 (ENSMMUG00000019357) #24	ACTL7A (ENSMMUG00000019355) #25	ACTL7B (ENSMMUG00000019354) #26	KLF4 (ENSMMUG00000006088) #27	RAD23B (ENSMMUG00000014944) #28	ENSMMUG00000053926	ZNF462 (ENSMMUG00000017151) #29	TMEM38B (ENSMMUG00000002672) #30	FKTN (ENSMMUG00000002669) #32	FSD1L (ENSMMUG00000002665) #33	SLC44A1 (ENSMMUG00000015024) #34	ENSMMUG00000058597	ABCA1 (ENSMMUG00000020608) #35
Rhesus	MODERN SPECIES	4	IL1F10 (ENSMMUG00000061530)	IL36RN (ENSMMUG00000061691)	IL36B (ENSMMUG00000064457)	IL36A (ENSMMUG00000000988)	IL36G (ENSMMUG00000062948)	IL37 (ENSMMUG00000005922)	IL1B (ENSMMUG00000061716)	IL1A (ENSMMUG00000052787)	CKAP2L (ENSMMUG00000019773)	NT5DC4 (ENSMMUG00000019770)	ENSMMUG00000050951	SLC20A1 (ENSMMUG00000004574)	CHCHD5 (ENSMMUG00000007779)	ENSMMUG00000062885	POLR1B (ENSMMUG00000009468)	ENSMMUG00000053295 #22	ENSMMUG00000056411	ZC3H6 (ENSMMUG00000016430)	ZC3H8 (ENSMMUG00000044163)	TMEM87B (ENSMMUG00000002231)	MERTK (ENSMMUG00000010066)	ANAPC1 (ENSMMUG00000012115)	ENSMMUG00000059896	BCL2L11 (ENSMMUG00000018423)	BUB1 (ENSMMUG00000017653)	NPHP1 (ENSMMUG00000022802)	ENSMMUG00000062819	MALL (ENSMMUG00000054575)	ENSMMUG00000056142	ENSMMUG00000049312	SOWAHC (ENSMMUG00000017179)
Cercopithecinae_b	ANCESTRAL SPECIES	7	ENSGT00940000153612.A	ENSGT01040000240406.A.b.b	ENSGT01050000244941.A.q.b #8	ENSGT00940000158226 #9	ENSGT00940000156061 #10	ENSGT00940000162445	ENSGT00940000154259.l.c.a.b.b #13	ENSGT00390000005322 #14	ENSGT00930000151059 #15	ENSGT00940000161837 #16	ENSGT00940000153341.b.p.a.b.b.b.b.g.b	ENSGT00940000157888 #17	ENSGT00940000158331 #19	ENSGT00940000159043 #20	ENSGT00390000001667 #21	ENSGT01030000234543.F #22	ENSGT00450000040303.c #23	ENSGT00390000013344 #24	ENSGT00940000162158 #25	ENSGT00940000162582 #26	ENSGT00940000156229 #27	ENSGT00390000012078.b.c #28	ENSGT00940000156411 #29	ENSGT00950000182976.b.a.k	ENSGT00390000018845.e #30	ENSGT00940000160867 #31	ENSGT00390000014471.i #32	ENSGT00940000157979 #33	ENSGT00910000146916	ENSGT00940000157174 #34	ENSGT00940000154658.b #35
Olive baboon	MODERN SPECIES	4	OR2K2 (ENSPANG00000001755)	ENSPANG00000037739 #8	MUSK (ENSPANG00000025746) #9	SVEP1 (ENSPANG00000025748) #10	TXNDC8 (ENSPANG00000025740)	ENSPANG00000031185 #13	C9orf152 (ENSPANG00000025739) #14	ENSPANG00000035251	PALM2AKAP2 (ENSPANG00000025738) #15	ENSPANG00000048512	ENSPANG00000048220	PTPN3 (ENSPANG00000025736) #17	EPB41L4B (ENSPANG00000025737) #19	FRRS1L (ENSPANG00000025735) #20	TMEM245 (ENSPANG00000025734) #21	CTNNAL1 (ENSPANG00000025732) #22	ABITRAM (ENSPANG00000025733) #23	ELP1 (ENSPANG00000025731) #24	ACTL7A (ENSPANG00000014060) #25	ACTL7B (ENSPANG00000019789) #26	KLF4 (ENSPANG00000040002) #27	RAD23B (ENSPANG00000025719) #28	ENSPANG00000044746	ZNF462 (ENSPANG00000048349) #29	ENSPANG00000041197	TMEM38B (ENSPANG00000025723) #30	TAL2 (ENSPANG00000017357) #31	ENSPANG00000037071	ENSPANG00000025724 #32	FSD1L (ENSPANG00000025726) #33	SLC44A1 (ENSPANG00000025727) #34
Cercopithecinae_d	ANCESTRAL SPECIES	130	ENSGT00940000153612.A	ENSGT01040000240406.A.b.b	ENSGT01050000244941.A.q.b #8	ENSGT00940000158226 #9	ENSGT00940000156061 #10	ENSGT00940000162445	ENSGT00940000154259.l.c.a.b.b #13	ENSGT00390000005322 #14	ENSGT00930000151059 #15	ENSGT00940000161837 #16	ENSGT00940000153341.b.p.a.b.b.b.b.g.b	ENSGT00940000157888 #17	ENSGT00940000158331 #19	ENSGT00940000159043 #20	ENSGT00390000001667 #21	ENSGT01030000234543.F #22	ENSGT00450000040303.c #23	ENSGT00390000013344 #24	ENSGT00940000162158 #25	ENSGT00940000162582 #26	ENSGT00940000156229 #27	ENSGT00390000012078.b.c #28	ENSGT00940000156411 #29	ENSGT00950000182976.b.a.k	ENSGT00390000018845.e #30	ENSGT00940000160867 #31	ENSGT00390000014471.i #32	ENSGT00940000157979 #33	ENSGT00910000146916	ENSGT00940000157174 #34	ENSGT00940000154658.b #35
Sooty mangabey	MODERN SPECIES	231	ECPAS (ENSCATG00000036466)	OR2K2 (ENSCATG00000015378)	LPAR1 (ENSCATG00000000222) #8	MUSK (ENSCATG00000034968) #9	SVEP1 (ENSCATG00000033969) #10	TXNDC8 (ENSCATG00000033558)	ENSCATG00000034102 #13	C9orf152 (ENSCATG00000031973) #14	PALM2AKAP2 (ENSCATG00000027194) #15	ENSCATG00000034078 #16	ENSCATG00000038233	PTPN3 (ENSCATG00000042446) #17	EPB41L4B (ENSCATG00000037317) #19	FRRS1L (ENSCATG00000026013) #20	TMEM245 (ENSCATG00000036531) #21	CTNNAL1 (ENSCATG00000039004) #22	ABITRAM (ENSCATG00000030229) #23	ELP1 (ENSCATG00000042841) #24	ACTL7A (ENSCATG00000021871) #25	ACTL7B (ENSCATG00000022602) #26	KLF4 (ENSCATG00000019152) #27	RAD23B (ENSCATG00000036672) #28	ENSCATG00000035053
Drill	MODERN SPECIES	1495	ENSMLEG00000023734	ENSMLEG00000011401	LPAR1 (ENSMLEG00000043562) #8	MUSK (ENSMLEG00000036730) #9	SVEP1 (ENSMLEG00000042709) #10	TXNDC8 (ENSMLEG00000030006)	ENSMLEG00000029435 #13	C9orf152 (ENSMLEG00000027043) #14	PALM2AKAP2 (ENSMLEG00000037527) #15	ENSMLEG00000042703 #16	ENSMLEG00000037721	PTPN3 (ENSMLEG00000039144) #17	EPB41L4B (ENSMLEG00000034040) #19	FRRS1L (ENSMLEG00000033941) #20	TMEM245 (ENSMLEG00000029371) #21	CTNNAL1 (ENSMLEG00000040696) #22	ABITRAM (ENSMLEG00000027263) #23	ELP1 (ENSMLEG00000033480) #24	ACTL7A (ENSMLEG00000027088) #25	ACTL7B (ENSMLEG00000008294) #26	ENSMLEG00000030413 #27	ENSMLEG00000037555	RAD23B (ENSMLEG00000029024) #28	ZNF462 (ENSMLEG00000028635) #29	ENSMLEG00000021022	TMEM38B (ENSMLEG00000033819) #30	TAL2 (ENSMLEG00000027516) #31	ENSMLEG00000038552 #32	FSD1L (ENSMLEG00000031441) #33	ENSMLEG00000011494	SLC44A1 (ENSMLEG00000035531) #34
Strepsirrhini	ANCESTRAL SPECIES	8	ENSGT00940000153612.A	ENSGT01040000240406.A.b.b	ENSGT01050000244941.A #8	ENSGT00940000158226 #9	ENSGT00940000156061 #10	ENSGT00940000162445	ENSGT00940000154259.k.a ##13	ENSGT00940000154259.l #13	ENSGT00390000005322 #14	ENSGT00930000151059 #15	ENSGT00940000161837 #16	ENSGT00940000157888 #17	ENSGT00940000158331 #19	ENSGT00940000159043 #20	ENSGT00390000001667 #21	ENSGT01030000234543.F #22	ENSGT00450000040303 #23	ENSGT00390000013344 #24	ENSGT00940000162158.l #25	ENSGT00940000162582 #26	ENSGT00940000156229 #27	ENSGT00390000012078.b #28	ENSGT00940000156411 #29	ENSGT00390000018845.e.c #30	ENSGT00940000160867 #31	ENSGT00390000014471 #32	ENSGT00940000157979 #33	ENSGT00940000157174 #34	ENSGT00940000154658.b #35	ENSGT00950000183018.b.k.b ##37	ENSGT00950000183018.b.k.a #37
Bushbaby	MODERN SPECIES	129	ZNF483 (ENSOGAG00000011399)	ECPAS (ENSOGAG00000011393)	OR2K2 (ENSOGAG00000025252)	ENSOGAG00000015335 #8	MUSK (ENSOGAG00000012704) #9	SVEP1 (ENSOGAG00000011809) #10	ENSOGAG00000009165 ##13	C9orf152 (ENSOGAG00000009164) #14	PALM2AKAP2 (ENSOGAG00000009157) #15	ENSOGAG00000025160 #16	ENSOGAG00000034039	PTPN3 (ENSOGAG00000016018) #17	EPB41L4B (ENSOGAG00000005508) #19	FRRS1L (ENSOGAG00000026708) #20	TMEM245 (ENSOGAG00000009075) #21	CTNNAL1 (ENSOGAG00000009072) #22	ABITRAM (ENSOGAG00000024317) #23	ELP1 (ENSOGAG00000009065) #24	ACTL7A (ENSOGAG00000009064) #25	ACTL7B (ENSOGAG00000009063) #26	ENSOGAG00000024789	KLF4 (ENSOGAG00000029918) #27	ENSOGAG00000025236	ENSOGAG00000024651	RAD23B (ENSOGAG00000014216) #28	ZNF462 (ENSOGAG00000001625) #29	TMEM38B (ENSOGAG00000033320) #30	TAL2 (ENSOGAG00000009225) #31	FKTN (ENSOGAG00000024071) #32	FSD1L (ENSOGAG00000029141) #33	SLC44A1 (ENSOGAG00000005531) #34
Lemuriformes	ANCESTRAL SPECIES	12	ENSGT00940000153612.A	ENSGT01040000240406.A.b.b	ENSGT01050000244941.A #8	ENSGT00940000158226 #9	ENSGT00940000156061 #10	ENSGT00940000162445	ENSGT00940000154259.k.a ##13	ENSGT00940000154259.l #13	ENSGT00390000005322 #14	ENSGT00930000151059 #15	ENSGT00940000161837 #16	ENSGT00940000157888 #17	ENSGT00940000158331 #19	ENSGT00940000159043 #20	ENSGT00390000001667 #21	ENSGT01030000234543.F #22	ENSGT00450000040303 #23	ENSGT00390000013344 #24	ENSGT00940000162158.l #25	ENSGT00940000162582 #26	ENSGT00940000156229 #27	ENSGT00390000012078.b #28	ENSGT00940000156411 #29	ENSGT00390000018845.e.c #30	ENSGT00940000160867 #31	ENSGT00390000014471 #32	ENSGT00940000157979 #33	ENSGT00940000157174 #34	ENSGT00940000154658.b #35	ENSGT00950000183018.b.k.b ##37	ENSGT00950000183018.b.k.a #37
Mouse lemur	MODERN SPECIES	1	ENSMICG00000043426	ECPAS (ENSMICG00000000003)	ENSMICG00000044771	LPAR1 (ENSMICG00000004352) #8	MUSK (ENSMICG00000004347) #9	SVEP1 (ENSMICG00000002133) #10	TXNDC8 (ENSMICG00000002131)	ENSMICG00000002128 ##13	C9orf152 (ENSMICG00000042061) #14	PALM2AKAP2 (ENSMICG00000002119) #15	ENSMICG00000046433 #16	PTPN3 (ENSMICG00000002104) #17	EPB41L4B (ENSMICG00000002096) #19	FRRS1L (ENSMICG00000002090) #20	TMEM245 (ENSMICG00000002081) #21	CTNNAL1 (ENSMICG00000002075) #22	ABITRAM (ENSMICG00000042265) #23	ELP1 (ENSMICG00000002058) #24	ENSMICG00000004603 #27	ENSMICG00000044787	ENSMICG00000027027 #28	ZNF462 (ENSMICG00000008466) #29	ENSMICG00000044480	TMEM38B (ENSMICG00000001721) #30	TAL2 (ENSMICG00000045486) #31	FKTN (ENSMICG00000001709) #32	FSD1L (ENSMICG00000001704) #33	SLC44A1 (ENSMICG00000012375) #34	ABCA1 (ENSMICG00000006176) #35	NIPSNAP3B (ENSMICG00000035219) ##37	NIPSNAP3A (ENSMICG00000001137) #37
Lemuriformes_a	ANCESTRAL SPECIES	2	ENSGT00940000153612.A	ENSGT01040000240406.A.b.b	ENSGT01050000244941.A #8	ENSGT00940000158226 #9	ENSGT00940000156061 #10	ENSGT00940000162445	ENSGT00940000154259.k.a ##13	ENSGT00940000154259.l #13	ENSGT00390000005322 #14	ENSGT00930000151059 #15	ENSGT00940000161837 #16	ENSGT00940000157888 #17	ENSGT00940000158331 #19	ENSGT00940000159043 #20	ENSGT00390000001667 #21	ENSGT01030000234543.F #22	ENSGT00450000040303 #23	ENSGT00390000013344 #24	ENSGT00940000162158.l #25	ENSGT00940000162582 #26	ENSGT00940000156229 #27	ENSGT00390000012078.b #28	ENSGT00940000156411 #29	ENSGT00390000018845.e.c #30	ENSGT00940000160867 #31	ENSGT00390000014471 #32	ENSGT00940000157979 #33	ENSGT00940000157174 #34	ENSGT00940000154658.b #35	ENSGT00950000183018.b.k.b ##37	ENSGT00950000183018.b.k.a #37
Coquerels sifaka	MODERN SPECIES	140											ENSPCOG00000015469 #16	PTPN3 (ENSPCOG00000028551) #17	EPB41L4B (ENSPCOG00000022633) #19	FRRS1L (ENSPCOG00000023777) #20	TMEM245 (ENSPCOG00000027730) #21	CTNNAL1 (ENSPCOG00000005922) #22	ABITRAM (ENSPCOG00000021341) #23	ELP1 (ENSPCOG00000002298) #24	KLF4 (ENSPCOG00000015757) #27	RAD23B (ENSPCOG00000006374) #28	ZNF462 (ENSPCOG00000019171) #29	TMEM38B (ENSPCOG00000009192) #30	TAL2 (ENSPCOG00000012949) #31	FKTN (ENSPCOG00000015568) #32	FSD1L (ENSPCOG00000022453) #33	ENSPCOG00000024558 #34	ABCA1 (ENSPCOG00000014966) #35	NIPSNAP3B (ENSPCOG00000017296) ##37	NIPSNAP3A (ENSPCOG00000014530) #37	OR13D1 (ENSPCOG00000026887)	SMC2 (ENSPCOG00000015265)
Greater bamboo lemur	MODERN SPECIES	428						SVEP1 (ENSPSMG00000019290) #10	ENSPSMG00000019254	ENSPSMG00000019237 ##13	C9orf152 (ENSPSMG00000019233) #14	PALM2AKAP2 (ENSPSMG00000019166) #15	ENSPSMG00000019111	PTPN3 (ENSPSMG00000018813) #17	EPB41L4B (ENSPSMG00000018633) #19	FRRS1L (ENSPSMG00000018605) #20	TMEM245 (ENSPSMG00000018590) #21	ENSPSMG00000018552 #22
Laurasiatheria	ANCESTRAL SPECIES	9	ENSGT00940000162615	ENSGT00940000153612.A	ENSGT01040000240406.A.b.b	ENSGT01050000244941.A #8	ENSGT00940000158226 #9	ENSGT00940000156061 #10	ENSGT00940000162445	ENSGT00940000154259.l #13	ENSGT00390000005322 #14	ENSGT00930000151059 #15	ENSGT00940000161837 #16	ENSGT00940000157888 #17	ENSGT00940000158331 #19	ENSGT00940000159043 #20	ENSGT00390000001667 #21	ENSGT01030000234543.F #22	ENSGT00450000040303 #23	ENSGT00390000013344 #24	ENSGT00940000162158 #25	ENSGT00940000162582 #26	ENSGT00940000156229 #27	ENSGT00390000012078.b #28	ENSGT00940000156411 #29	ENSGT00390000018845.e #30	ENSGT00940000160867 #31	ENSGT00390000014471 #32	ENSGT00940000157979 #33	ENSGT00940000157174 #34	ENSGT00940000154658.b #35	ENSGT00950000183018.b.k.b ##37	ENSGT00950000183018.b.k.a #37
Eulipotyphla	ANCESTRAL SPECIES	920																ENSGT01030000234543.F #22	ENSGT00450000040303 #23
Common shrew	MODERN SPECIES	1430																ENSSARG00000009339 #22	ABITRAM (ENSSARG00000009305) #23
Hedgehog	MODERN SPECIES	2018																CTNNAL1 (ENSEEUG00000013839) #22	ENSEEUG00000013826 #23
Laurasiatheria_a	ANCESTRAL SPECIES	11	ENSGT00940000162615	ENSGT00940000153612.A	ENSGT01040000240406.A.b.b	ENSGT01050000244941.A #8	ENSGT00940000158226 #9	ENSGT00940000156061 #10	ENSGT00940000162445	ENSGT00940000154259.l.q.b.b #13	ENSGT00390000005322 #14	ENSGT00930000151059 #15	ENSGT00940000161837 #16	ENSGT00940000157888 #17	ENSGT00940000158331 #19	ENSGT00940000159043 #20	ENSGT00390000001667 #21	ENSGT01030000234543.F #22	ENSGT00450000040303 #23	ENSGT00390000013344 #24	ENSGT00940000162158 #25	ENSGT00940000162582 #26	ENSGT00940000156229 #27	ENSGT00390000012078.b #28	ENSGT00940000156411 #29	ENSGT00390000018845.e #30	ENSGT00940000160867 #31	ENSGT00390000014471 #32	ENSGT00940000157979 #33	ENSGT00940000157174 #34	ENSGT00940000154658.b #35	ENSGT00950000183018.b.k.b ##37	ENSGT00950000183018.b.k.a #37
Laurasiatheria_b	ANCESTRAL SPECIES	11	ENSGT01040000240406.A.b.b	ENSGT01050000244941.A #8	ENSGT00940000158226 #9	ENSGT00940000156061 #10	ENSGT00940000162445	ENSGT00940000154259.l.r #13	ENSGT00940000167503	ENSGT00940000154259.l.q.a.b #13	ENSGT00390000005322 #14	ENSGT00930000151059 #15	ENSGT00940000161837 #16	ENSGT00940000157888 #17	ENSGT00940000158331 #19	ENSGT00940000159043 #20	ENSGT00390000001667 #21	ENSGT01030000234543.F #22	ENSGT00450000040303 #23	ENSGT00390000013344 #24	ENSGT00940000162158 #25	ENSGT00940000162582 #26	ENSGT00940000156229 #27	ENSGT00390000012078.b #28	ENSGT00940000156411 #29	ENSGT00390000018845.e #30	ENSGT00940000160867 #31	ENSGT00390000014471 #32	ENSGT00940000157979 #33	ENSGT00940000157174 #34	ENSGT00940000154658.b #35	ENSGT00950000183018.b.k.b ##37	ENSGT00950000183018.b.k.a #37
Laurasiatheria_c	ANCESTRAL SPECIES	11	ENSGT00940000162615	ENSGT00940000153612.A	ENSGT01040000240406.A.b.b	ENSGT01050000244941.A #8	ENSGT00940000158226 #9	ENSGT00940000156061 #10	ENSGT00940000162445	ENSGT00940000154259.l.r #13	ENSGT00390000005322 #14	ENSGT00930000151059 #15	ENSGT00940000161837 #16	ENSGT00940000157888 #17	ENSGT00940000158331 #19	ENSGT00940000159043 #20	ENSGT00390000001667 #21	ENSGT01030000234543.F #22	ENSGT00450000040303 #23	ENSGT00390000013344 #24	ENSGT00940000162158 #25	ENSGT00940000162582 #26	ENSGT00940000156229 #27	ENSGT00390000012078.b #28	ENSGT00940000156411 #29	ENSGT00390000018845.e #30	ENSGT00940000160867 #31	ENSGT00390000014471 #32	ENSGT00940000157979 #33	ENSGT00940000157174 #34	ENSGT00940000154658.b #35	ENSGT00950000183018.b.k.b ##37	ENSGT01040000240406.A.b.a.b
Equus	ANCESTRAL SPECIES	35	ENSGT00940000162615	ENSGT00940000153612.A	ENSGT01040000240406.A.b.b	ENSGT01050000244941.A #8	ENSGT00940000158226 #9	ENSGT00940000156061 #10	ENSGT00940000162445	ENSGT00940000154259.l.q.b.b #13	ENSGT00390000005322 #14	ENSGT00930000151059 #15	ENSGT00940000161837 #16	ENSGT00940000157888 #17	ENSGT00940000158331 #19	ENSGT00940000159043 #20	ENSGT00390000001667 #21	ENSGT01030000234543.F #22	ENSGT00450000040303 #23	ENSGT00390000013344 #24	ENSGT00940000162158 #25	ENSGT00940000162582 #26	ENSGT01000000215858	ENSGT00940000156229 #27	ENSGT00390000012078.b.w #28	ENSGT00940000156411 #29	ENSGT00390000018845.e #30	ENSGT00940000160867 #31	ENSGT00390000014471 #32	ENSGT00940000157979 #33	ENSGT00940000157174 #34	ENSGT00940000154658.b #35	ENSGT00950000183018.b.k.b ##37
Donkey	MODERN SPECIES	1	ZNF483 (ENSEASG00005000872)	ECPAS (ENSEASG00005000801)	OR2K2 (ENSEASG00005035842)	LPAR1 (ENSEASG00005023117) #8	MUSK (ENSEASG00005023111) #9	SVEP1 (ENSEASG00005023088) #10	ENSEASG00005028570	TXN (ENSEASG00005035917) #13	C9orf152 (ENSEASG00005037912) #14	PALM2AKAP2 (ENSEASG00005023068) #15	ENSEASG00005037908 #16	PTPN3 (ENSEASG00005023061) #17	EPB41L4B (ENSEASG00005023050) #19	FRRS1L (ENSEASG00005027525) #20	TMEM245 (ENSEASG00005023041) #21	CTNNAL1 (ENSEASG00005023040) #22	ABITRAM (ENSEASG00005030056) #23	ELP1 (ENSEASG00005023037) #24	ACTL7A (ENSEASG00005023036) #25	ACTL7B (ENSEASG00005023035) #26	ENSEASG00005030541	ENSEASG00005023032	KLF4 (ENSEASG00005023031) #27	ENSEASG00005023029	ENSEASG00005023028 #28	ZNF462 (ENSEASG00005023027) #29	TMEM38B (ENSEASG00005023026) #30	TAL2 (ENSEASG00005031592) #31	FKTN (ENSEASG00005023023) #32	FSD1L (ENSEASG00005023022) #33	SLC44A1 (ENSEASG00005023020) #34
Horse	MODERN SPECIES	17	ZNF483 (ENSECAG00000000117)	ECPAS (ENSECAG00000020519)	ENSECAG00000055274	OR2K2 (ENSECAG00000045798)	LPAR1 (ENSECAG00000016606) #8	MUSK (ENSECAG00000010228) #9	SVEP1 (ENSECAG00000021653) #10	TXNDC8 (ENSECAG00000021607)	TXN (ENSECAG00000013324) #13	C25H9orf152 (ENSECAG00000013290) #14	PALM2AKAP2 (ENSECAG00000010552) #15	PTPN3 (ENSECAG00000007806) #17	EPB41L4B (ENSECAG00000018914) #19	FRRS1L (ENSECAG00000017718) #20	TMEM245 (ENSECAG00000008150) #21	CTNNAL1 (ENSECAG00000018131) #22	ABITRAM (ENSECAG00000014764) #23	ELP1 (ENSECAG00000014279) #24	ACTL7A (ENSECAG00000005092) #25	ACTL7B (ENSECAG00000005070) #26	ENSECAG00000030375 #28	KLF4 (ENSECAG00000010613) #27	ENSECAG00000029987	RAD23B (ENSECAG00000021928) #28	ZNF462 (ENSECAG00000015655) #29	TMEM38B (ENSECAG00000013488) #30	ENSECAG00000046843 #31	FKTN (ENSECAG00000008158) #32	FSD1L (ENSECAG00000012984) #33	ENSECAG00000032969	SLC44A1 (ENSECAG00000002233) #34
Chiroptera	ANCESTRAL SPECIES	8	ENSGT00940000162615	ENSGT00940000153612.A	ENSGT01040000240406.A.b.b	ENSGT01050000244941.A #8	ENSGT00940000158226 #9	ENSGT00940000156061 #10	ENSGT00940000162445	ENSGT00940000154259.l.r #13	ENSGT00390000005322 #14	ENSGT00930000151059 #15	ENSGT00940000161837 #16	ENSGT00940000157888 #17	ENSGT00940000158331 #19	ENSGT00940000159043 #20	ENSGT00390000001667 #21	ENSGT01030000234543.F #22	ENSGT00450000040303 #23	ENSGT00390000013344 #24	ENSGT00940000162158 #25	ENSGT00940000162582 #26	ENSGT00940000156229 #27	ENSGT00390000012078.b #28	ENSGT00940000156411 #29	ENSGT00390000018845.e #30	ENSGT00940000160867 #31	ENSGT00390000014471 #32	ENSGT00940000157979 #33	ENSGT00940000157174 #34	ENSGT00940000154658.b #35	ENSGT00950000183018.b.k.b ##37	ENSGT00950000183018.b.k.a #37
Microchiroptera	ANCESTRAL SPECIES	7	ENSGT00940000162615	ENSGT00940000153612.A	ENSGT01040000240406.A.b.b	ENSGT01050000244941.A #8	ENSGT00940000158226 #9	ENSGT00940000156061 #10	ENSGT00940000162445	ENSGT00940000154259.l.r #13	ENSGT00390000005322 #14	ENSGT00930000151059 #15	ENSGT00940000161837 #16	ENSGT00940000157888 #17	ENSGT00940000158331 #19	ENSGT00940000159043 #20	ENSGT00390000001667 #21	ENSGT01030000234543.F #22	ENSGT00450000040303 #23	ENSGT00390000013344 #24	ENSGT00940000162158 #25	ENSGT00940000162582 #26	ENSGT00940000156229 #27	ENSGT00390000012078.b #28	ENSGT00940000156411 #29	ENSGT00390000018845.e #30	ENSGT00940000160867 #31	ENSGT00390000014471 #32	ENSGT00940000157979 #33	ENSGT00940000157174 #34	ENSGT00940000154658.b #35	ENSGT00950000183018.b.k.a #37	ENSGT01040000240406.A.b.a.a.a.a.a.a.a.b
Greater horseshoe bat	MODERN SPECIES	3	ECPAS (ENSRFEG00010019217)	OR2K2 (ENSRFEG00010019161)	LPAR1 (ENSRFEG00010019123) #8	MUSK (ENSRFEG00010019006) #9	ENSRFEG00010018970 #10	ENSRFEG00010018951 #10	ENSRFEG00010018766	ENSRFEG00010018690 #13	C9orf152 (ENSRFEG00010018639) #14	PALM2AKAP2 (ENSRFEG00010018553) #15	ENSRFEG00010018409 #16	PTPN3 (ENSRFEG00010018189) #17	EPB41L4B (ENSRFEG00010018038) #19	FRRS1L (ENSRFEG00010017957) #20	TMEM245 (ENSRFEG00010017866) #21	CTNNAL1 (ENSRFEG00010017765) #22	ABITRAM (ENSRFEG00010017721) #23	ELP1 (ENSRFEG00010017609) #24	ACTL7A (ENSRFEG00010017577) #25	ACTL7B (ENSRFEG00010017556) #26	KLF4 (ENSRFEG00010017439) #27	ENSRFEG00010017423	RAD23B (ENSRFEG00010017264) #28	ZNF462 (ENSRFEG00010017189) #29	ENSRFEG00010017124	TMEM38B (ENSRFEG00010017023) #30	TAL2 (ENSRFEG00010017010) #31	FKTN (ENSRFEG00010016923) #32	FSD1L (ENSRFEG00010016824) #33	ENSRFEG00010016774	SLC44A1 (ENSRFEG00010016269) #34
Microbat	MODERN SPECIES	980	ENSMLUG00000009534	ECPAS (ENSMLUG00000003939)	ENSMLUG00000024331	LPAR1 (ENSMLUG00000003936) #8	MUSK (ENSMLUG00000003928) #9	SVEP1 (ENSMLUG00000014118) #10	ENSMLUG00000000351	ENSMLUG00000014115	TXN (ENSMLUG00000009065) #13	PALM2AKAP2 (ENSMLUG00000011035) #15	ENSMLUG00000026921 #16	PTPN3 (ENSMLUG00000002200) #17	EPB41L4B (ENSMLUG00000002183) #19	FRRS1L (ENSMLUG00000002180) #20	ENSMLUG00000002168	CTNNAL1 (ENSMLUG00000012830) #22	ABITRAM (ENSMLUG00000012826) #23	ELP1 (ENSMLUG00000012798) #24	ACTL7A (ENSMLUG00000009740) #25	ACTL7B (ENSMLUG00000009727) #26	KLF4 (ENSMLUG00000014795) #27	RAD23B (ENSMLUG00000017622) #28	ENSMLUG00000005692	ZNF462 (ENSMLUG00000011306) #29	TMEM38B (ENSMLUG00000002636) #30	TAL2 (ENSMLUG00000008792) #31	FKTN (ENSMLUG00000005101) #32	FSD1L (ENSMLUG00000005089) #33	ENSMLUG00000023995	SLC44A1 (ENSMLUG00000015406) #34	ABCA1 (ENSMLUG00000010157) #35
Megabat	MODERN SPECIES	1259														FRRS1L (ENSPVAG00000012709) #20	TMEM245 (ENSPVAG00000012706) #21	CTNNAL1 (ENSPVAG00000012704) #22	ABITRAM (ENSPVAG00000012703) #23	ELP1 (ENSPVAG00000012701) #24	ACTL7A (ENSPVAG00000012700) #25	ACTL7B (ENSPVAG00000012699) #26
Carnivora	ANCESTRAL SPECIES	18	ENSGT00940000162615	ENSGT00940000153612.A	ENSGT01040000240406.A.b.b	ENSGT01050000244941.A #8	ENSGT00940000158226 #9	ENSGT00940000156061 #10	ENSGT00940000162445	ENSGT00940000154259.l.q.a.b #13	ENSGT00390000005322 #14	ENSGT00930000151059 #15	ENSGT00940000161837 #16	ENSGT00940000157888 #17	ENSGT00940000158331 #19	ENSGT00940000159043 #20	ENSGT00390000001667 #21	ENSGT01030000234543.F #22	ENSGT00450000040303 #23	ENSGT00390000013344 #24	ENSGT00940000162158 #25	ENSGT00940000162582 #26	ENSGT00940000156229 #27	ENSGT00390000012078.b #28	ENSGT00940000156411 #29	ENSGT00390000018845.e #30	ENSGT00940000160867 #31	ENSGT00390000014471 #32	ENSGT00940000157979 #33	ENSGT00940000157174 #34	ENSGT00980000200950	ENSGT00940000154658.b #35	ENSGT00950000183018.b.k.b ##37
Felidae	ANCESTRAL SPECIES	16	ENSGT00940000162615	ENSGT00940000153612.A	ENSGT01040000240406.A.b.b	ENSGT01050000244941.A #8	ENSGT00940000158226 #9	ENSGT00940000156061 #10	ENSGT00940000162445	ENSGT00940000154259.l.q.b.a.b #13	ENSGT00390000005322 #14	ENSGT00930000151059 #15	ENSGT00940000161837 #16	ENSGT00940000157888 #17	ENSGT00940000158331 #19	ENSGT00940000159043 #20	ENSGT00390000001667 #21	ENSGT01030000234543.F #22	ENSGT00450000040303 #23	ENSGT00390000013344 #24	ENSGT00940000162158 #25	ENSGT00940000162582 #26	ENSGT00940000156229 #27	ENSGT00390000012078.b #28	ENSGT00940000156411 #29	ENSGT00390000018845.e #30	ENSGT00940000160867 #31	ENSGT00390000014471 #32	ENSGT00940000157979 #33	ENSGT00940000157174 #34	ENSGT00980000200950	ENSGT00940000154658.b #35	ENSGT00950000183018.b.k.b ##37
Panthera	ANCESTRAL SPECIES	11	ENSGT00940000154810	ENSGT00940000162615	ENSGT00940000153612.A	ENSGT01050000244941.A #8	ENSGT00940000158226 #9	ENSGT00940000156061 #10	ENSGT00940000162445	ENSGT00940000154259.l.q.b.b #13	ENSGT00390000005322 #14	ENSGT00930000151059 #15	ENSGT00940000161837 #16	ENSGT00940000157888 #17	ENSGT00940000158331 #19	ENSGT00940000159043 #20	ENSGT00390000001667 #21	ENSGT01030000234543.F #22	ENSGT00450000040303 #23	ENSGT00390000013344 #24	ENSGT00940000162158 #25	ENSGT00940000162582 #26	ENSGT00940000156229 #27	ENSGT00390000012078.b #28	ENSGT00940000156411 #29	ENSGT00390000018845.e #30	ENSGT00940000160867 #31	ENSGT00390000014471 #32	ENSGT00940000157979 #33	ENSGT00940000157174 #34	ENSGT00980000200950	ENSGT00940000154658.b #35	ENSGT00950000183018.b.k.b ##37
Panthera_a	ANCESTRAL SPECIES	10	ENSGT00940000154810	ENSGT00940000162615	ENSGT00940000153612.A	ENSGT01050000244941.A #8	ENSGT00940000158226 #9	ENSGT00940000156061 #10	ENSGT00940000162445	ENSGT00940000154259.l.q.b.a.b #13	ENSGT00390000005322 #14	ENSGT00930000151059 #15	ENSGT00940000161837 #16	ENSGT00940000157888 #17	ENSGT00940000158331 #19	ENSGT00940000159043 #20	ENSGT00390000001667 #21	ENSGT01030000234543.F #22	ENSGT00450000040303 #23	ENSGT00390000013344 #24	ENSGT00940000162158 #25	ENSGT00940000162582 #26	ENSGT00940000156229 #27	ENSGT00390000012078.b #28	ENSGT00940000156411 #29	ENSGT00390000018845.e #30	ENSGT00940000160867 #31	ENSGT00390000014471 #32	ENSGT00940000157979 #33	ENSGT00940000157174 #34	ENSGT00980000200950	ENSGT00940000154658.b #35	ENSGT00950000183018.b.k.b ##37
lion	MODERN SPECIES	13	DNAJC25 (ENSPLOG00000017763)	PTGR1 (ENSPLOG00000017807)	ZNF483 (ENSPLOG00000017952)	ECPAS (ENSPLOG00000018044)	LPAR1 (ENSPLOG00000018490) #8	MUSK (ENSPLOG00000018602) #9	SVEP1 (ENSPLOG00000019066) #10	ENSPLOG00000019699	TXN (ENSPLOG00000019862) #13	C9orf152 (ENSPLOG00000019892) #14	PALM2AKAP2 (ENSPLOG00000019986) #15	PTPN3 (ENSPLOG00000020287) #17	EPB41L4B (ENSPLOG00000020567) #19	FRRS1L (ENSPLOG00000020657) #20	TMEM245 (ENSPLOG00000020715) #21	CTNNAL1 (ENSPLOG00000020834) #22	ABITRAM (ENSPLOG00000020919) #23	ELP1 (ENSPLOG00000020965) #24	ACTL7A (ENSPLOG00000021000) #25	ACTL7B (ENSPLOG00000021012) #26	KLF4 (ENSPLOG00000021040) #27	RAD23B (ENSPLOG00000021089) #28	ZNF462 (ENSPLOG00000021126) #29	TMEM38B (ENSPLOG00000021197) #30	TAL2 (ENSPLOG00000021214) #31	FKTN (ENSPLOG00000021228) #32	FSD1L (ENSPLOG00000021278) #33	SLC44A1 (ENSPLOG00000021435) #34	ABCA1 (ENSPLOG00000021578) #35	NIPSNAP3B (ENSPLOG00000021689) ##37	NIPSNAP3A (ENSPLOG00000021710) #37
leopard	MODERN SPECIES	26	ZNF483 (ENSPPRG00000014067)	ECPAS (ENSPPRG00000013029)	LPAR1 (ENSPPRG00000009496) #8	MUSK (ENSPPRG00000007145) #9	ENSPPRG00000003536	SVEP1 (ENSPPRG00000001793) #10	ENSPPRG00000023198	ENSPPRG00000023724 #13	C9orf152 (ENSPPRG00000021823) #14	PALM2AKAP2 (ENSPPRG00000021516) #15	ENSPPRG00000020430 #16	PTPN3 (ENSPPRG00000015022) #17	EPB41L4B (ENSPPRG00000011114) #19	FRRS1L (ENSPPRG00000009720) #20	TMEM245 (ENSPPRG00000009302) #21	CTNNAL1 (ENSPPRG00000007177) #22	ABITRAM (ENSPPRG00000004835) #23	ELP1 (ENSPPRG00000004707) #24	ACTL7A (ENSPPRG00000022234) #25	ACTL7B (ENSPPRG00000022222) #26	ENSPPRG00000003412	KLF4 (ENSPPRG00000000867) #27	ENSPPRG00000000456	RAD23B (ENSPPRG00000022932) #28	ZNF462 (ENSPPRG00000023097) #29	TMEM38B (ENSPPRG00000024133) #30	TAL2 (ENSPPRG00000021701) #31	FKTN (ENSPPRG00000024360) #32	FSD1L (ENSPPRG00000024933) #33	SLC44A1 (ENSPPRG00000014775) #34	ENSPPRG00000014150
Tiger	MODERN SPECIES	473	ZNF483 (ENSPTIG00000018842)	ECPAS (ENSPTIG00000014375)	ENSPTIG00000013329	LPAR1 (ENSPTIG00000012409) #8	MUSK (ENSPTIG00000006834) #9	SVEP1 (ENSPTIG00000015429) #10	ENSPTIG00000013084	ENSPTIG00000011944 #13	C9orf152 (ENSPTIG00000011512) #14	PALM2AKAP2 (ENSPTIG00000010889) #15	ENSPTIG00000009316 #16	PTPN3 (ENSPTIG00000017837) #17	EPB41L4B (ENSPTIG00000015768) #19	FRRS1L (ENSPTIG00000014536) #20	TMEM245 (ENSPTIG00000012888) #21	CTNNAL1 (ENSPTIG00000007130) #22	ABITRAM (ENSPTIG00000006473) #23	ELP1 (ENSPTIG00000004053) #24	ACTL7A (ENSPTIG00000002288) #25	ACTL7B (ENSPTIG00000002259) #26	ENSPTIG00000001035 #27	RAD23B (ENSPTIG00000022094) #28	ZNF462 (ENSPTIG00000022002) #29	TMEM38B (ENSPTIG00000021938) #30	TAL2 (ENSPTIG00000002089) #31	FKTN (ENSPTIG00000020059) #32	FSD1L (ENSPTIG00000008803) #33	SLC44A1 (ENSPTIG00000002919) #34	ABCA1 (ENSPTIG00000020275) #35	NIPSNAP3B (ENSPTIG00000018697) ##37	NIPSNAP3A (ENSPTIG00000018439) #37
Cat	MODERN SPECIES	244	PTGR1 (ENSFCAG00000004339)	ZNF483 (ENSFCAG00000027153)	ECPAS (ENSFCAG00000006896)	OR2K2 (ENSFCAG00000026422)	LPAR1 (ENSFCAG00000028510) #8	MUSK (ENSFCAG00000004385) #9	SVEP1 (ENSFCAG00000004796) #10	TXNDC8 (ENSFCAG00000033736)	ENSFCAG00000046764 #13	CD4H9orf152 (ENSFCAG00000032145) #14	PALM2AKAP2 (ENSFCAG00000027493) #15	PTPN3 (ENSFCAG00000010948) #17	EPB41L4B (ENSFCAG00000010945) #19	FRRS1L (ENSFCAG00000031907) #20	TMEM245 (ENSFCAG00000010943) #21	CTNNAL1 (ENSFCAG00000026654) #22	ABITRAM (ENSFCAG00000034834) #23	ELP1 (ENSFCAG00000010939) #24	ACTL7A (ENSFCAG00000010938) #25	ACTL7B (ENSFCAG00000025879) #26	KLF4 (ENSFCAG00000028016) #27	RAD23B (ENSFCAG00000025586) #28	ZNF462 (ENSFCAG00000004231) #29	TMEM38B (ENSFCAG00000023318) #30	FKTN (ENSFCAG00000008048) #32	FSD1L (ENSFCAG00000012153) #33	SLC44A1 (ENSFCAG00000013294) #34	ENSFCAG00000053176	ABCA1 (ENSFCAG00000004355) #35	NIPSNAP3A (ENSFCAG00000024653) #37	ENSFCAG00000022837
Caniformia	ANCESTRAL SPECIES	16	ENSGT00940000162615	ENSGT00940000153612.A	ENSGT01040000240406.A.b.b	ENSGT01050000244941.A #8	ENSGT00940000158226 #9	ENSGT00940000156061 #10	ENSGT00940000162445	ENSGT00940000154259.l.q.a.b.a #13	ENSGT00390000005322 #14	ENSGT00930000151059 #15	ENSGT00940000161837 #16	ENSGT00940000157888 #17	ENSGT00940000158331 #19	ENSGT00940000159043 #20	ENSGT00390000001667 #21	ENSGT01030000234543.F #22	ENSGT00450000040303 #23	ENSGT00390000013344 #24	ENSGT00940000162158 #25	ENSGT00940000162582 #26	ENSGT00940000156229 #27	ENSGT00390000012078.b #28	ENSGT00940000156411 #29	ENSGT00390000018845.e #30	ENSGT00940000160867 #31	ENSGT00390000014471 #32	ENSGT00940000157979 #33	ENSGT00940000157174 #34	ENSGT00980000200950	ENSGT00940000154658.b #35	ENSGT00950000183018.b.k.b ##37
Canidae	ANCESTRAL SPECIES	9	ENSGT00940000153612.A	ENSGT01040000240406.A.b.b	ENSGT01050000244941.A #8	ENSGT00940000158226 #9	ENSGT00940000156061 #10	ENSGT00940000162445	ENSGT00940000154259.l.r #13	ENSGT00940000154259.l.q.a.b.a #13	ENSGT00390000005322 #14	ENSGT00930000151059 #15	ENSGT00940000161837 #16	ENSGT00940000157888 #17	ENSGT00940000158331 #19	ENSGT00940000159043 #20	ENSGT00390000001667 #21	ENSGT01030000234543.F #22	ENSGT00450000040303 #23	ENSGT00390000013344 #24	ENSGT00940000162158 #25	ENSGT00940000162582 #26	ENSGT00940000156229 #27	ENSGT00390000012078.b #28	ENSGT00940000156411 #29	ENSGT00390000018845.e #30	ENSGT00940000160867 #31	ENSGT00390000014471 #32	ENSGT00940000157979 #33	ENSGT00940000157174 #34	ENSGT00940000154658.b #35	ENSGT00950000183018.b.k.b ##37	ENSGT00950000183018.b.k.a #37
Canis_lupus	ANCESTRAL SPECIES	15	ENSGT00940000162615	ENSGT00940000153612.A	ENSGT01040000240406.A.b.b	ENSGT01050000244941.A #8	ENSGT00940000158226 #9	ENSGT00940000156061 #10	ENSGT00940000162445	ENSGT00940000154259.l.r #13	ENSGT00390000005322 #14	ENSGT00930000151059 #15	ENSGT00940000161837 #16	ENSGT00940000157888 #17	ENSGT00940000158331 #19	ENSGT00940000159043 #20	ENSGT00390000001667 #21	ENSGT01030000234543.F #22	ENSGT00450000040303 #23	ENSGT00390000013344 #24	ENSGT00940000162158 #25	ENSGT00940000162582 #26	ENSGT00940000156229 #27	ENSGT00390000012078.b #28	ENSGT00940000156411 #29	ENSGT00390000018845.e #30	ENSGT00940000160867 #31	ENSGT00390000014471 #32	ENSGT00940000157979 #33	ENSGT00940000157174 #34	ENSGT00940000154658.b #35	ENSGT00950000183018.b.k.b ##37	ENSGT00950000183018.b.k.a #37
Dingo	MODERN SPECIES	366	ZNF483 (ENSCAFG00020022557)	ECPAS (ENSCAFG00020022513)	OR2K2 (ENSCAFG00020022490)	LPAR1 (ENSCAFG00020022485) #8	MUSK (ENSCAFG00020022466) #9	SVEP1 (ENSCAFG00020022436) #10	ENSCAFG00020022429	ENSCAFG00020022428 #13	C9orf152 (ENSCAFG00020022427) #14	PALM2AKAP2 (ENSCAFG00020022425) #15	ENSCAFG00020022422 #16	PTPN3 (ENSCAFG00020021948) #17	EPB41L4B (ENSCAFG00020021911) #19	FRRS1L (ENSCAFG00020021910) #20	TMEM245 (ENSCAFG00020021841) #21	CTNNAL1 (ENSCAFG00020021832) #22	ABITRAM (ENSCAFG00020021824) #23	ELP1 (ENSCAFG00020020402) #24	ACTL7A (ENSCAFG00020020374) #25	ACTL7B (ENSCAFG00020020372) #26	KLF4 (ENSCAFG00020020355) #27	RAD23B (ENSCAFG00020020346) #28	ZNF462 (ENSCAFG00020020343) #29	ENSCAFG00020020331 #30	TAL2 (ENSCAFG00020020328) #31	FKTN (ENSCAFG00020020221) #32	FSD1L (ENSCAFG00020020189) #33	SLC44A1 (ENSCAFG00020020087) #34	ABCA1 (ENSCAFG00020020013) #35	NIPSNAP3B (ENSCAFG00020020011) ##37	NIPSNAP3A (ENSCAFG00020020010) #37
Dog	MODERN SPECIES	2	PTGR1 (ENSCAFG00845005537)	ZNF483 (ENSCAFG00845005442)	ECPAS (ENSCAFG00845005376)	LPAR1 (ENSCAFG00845013671) #8	MUSK (ENSCAFG00845013555) #9	SVEP1 (ENSCAFG00845013295) #10	ENSCAFG00845013227	ENSCAFG00845013183 #13	C9orf152 (ENSCAFG00845013069) #14	ENSCAFG00845013051	PALM2AKAP2 (ENSCAFG00845012812) #16	PTPN3 (ENSCAFG00845012416) #17	EPB41L4B (ENSCAFG00845012118) #19	FRRS1L (ENSCAFG00845012055) #20	TMEM245 (ENSCAFG00845011973) #21	CTNNAL1 (ENSCAFG00845011919) #22	ABITRAM (ENSCAFG00845011864) #23	ELP1 (ENSCAFG00845011728) #24	ACTL7A (ENSCAFG00845011684) #25	ACTL7B (ENSCAFG00845011671) #26	KLF4 (ENSCAFG00845011624) #27	RAD23B (ENSCAFG00845011556) #28	ZNF462 (ENSCAFG00845011443) #29	TMEM38B (ENSCAFG00845011350) #30	TAL2 (ENSCAFG00845011153) #31	FKTN (ENSCAFG00845011226) #32	FSD1L (ENSCAFG00845011014) #33	SLC44A1 (ENSCAFG00845010837) #34	ABCA1 (ENSCAFG00845010374) #35	ENSCAFG00845010284	NIPSNAP3A (ENSCAFG00845010079) #37
Red fox	MODERN SPECIES	42	ECPAS (ENSVVUG00000000339)	ENSVVUG00000028844	LPAR1 (ENSVVUG00000028841) #8	MUSK (ENSVVUG00000028836) #9	TXNDC8 (ENSVVUG00000028833) #10	TXN (ENSVVUG00000028831) #13	CUNH9orf152 (ENSVVUG00000028830) #14	PALM2AKAP2 (ENSVVUG00000028829) #15	ENSVVUG00000028827 #16	ENSVVUG00000028825	ENSVVUG00000028824	PTPN3 (ENSVVUG00000028561) #17	EPB41L4B (ENSVVUG00000028376) #19	ENSVVUG00000028364 #21	ENSVVUG00000028353 #21	ENSVVUG00000028349 #22	ENSVVUG00000028348	ENSVVUG00000028337 #23	ELP1 (ENSVVUG00000027495) #24	ACTL7A (ENSVVUG00000027420) #25	ACTL7B (ENSVVUG00000027419) #26	KLF4 (ENSVVUG00000027384) #27	RAD23B (ENSVVUG00000027357) #28	ZNF462 (ENSVVUG00000027344) #29	TMEM38B (ENSVVUG00000027339) #30	ENSVVUG00000027338 #31	FKTN (ENSVVUG00000027335) #32	FSD1L (ENSVVUG00000027331) #33	SLC44A1 (ENSVVUG00000027321) #34	ENSVVUG00000027315	ABCA1 (ENSVVUG00000027294) #35
Caniformia_b	ANCESTRAL SPECIES	12	ENSGT00940000162615	ENSGT00940000153612.A	ENSGT01040000240406.A.b.b	ENSGT01050000244941.A #8	ENSGT00940000158226 #9	ENSGT00940000156061 #10	ENSGT00940000162445	ENSGT00940000154259.l.q.a.b.a #13	ENSGT00390000005322 #14	ENSGT00930000151059 #15	ENSGT00940000161837 #16	ENSGT00940000157888 #17	ENSGT00940000158331 #19	ENSGT00940000159043 #20	ENSGT00390000001667 #21	ENSGT01030000234543.F #22	ENSGT00450000040303 #23	ENSGT00390000013344 #24	ENSGT00940000162158 #25	ENSGT00940000162582 #26	ENSGT00940000156229 #27	ENSGT00390000012078.b #28	ENSGT00940000156411 #29	ENSGT00390000018845.e #30	ENSGT00940000160867 #31	ENSGT00390000014471 #32	ENSGT00940000157979 #33	ENSGT00940000157174 #34	ENSGT00980000200950	ENSGT00940000154658.b #35	ENSGT00950000183018.b.k.b ##37
Mustelinae	ANCESTRAL SPECIES	22	ENSGT00940000162615	ENSGT00940000153612.A	ENSGT01040000240406.A.b.b	ENSGT01050000244941.A #8	ENSGT00940000158226 #9	ENSGT00940000156061 #10	ENSGT00940000162445	ENSGT00940000154259.l.q.a.b.a #13	ENSGT00390000005322 #14	ENSGT00930000151059 #15	ENSGT00940000161837 #16	ENSGT00940000157888 #17	ENSGT00940000158331 #19	ENSGT00940000159043 #20	ENSGT00390000001667 #21	ENSGT01030000234543.F #22	ENSGT00450000040303 #23	ENSGT00390000013344 #24	ENSGT00940000162158 #25	ENSGT00940000162582 #26	ENSGT00940000156229 #27	ENSGT00390000012078.b #28	ENSGT00940000156411 #29	ENSGT00390000018845.e #30	ENSGT00940000160867 #31	ENSGT00390000014471 #32	ENSGT00940000157979 #33	ENSGT00940000157174 #34	ENSGT00940000154658.b #35	ENSGT00950000183018.b.k.a #37	ENSGT01040000240406.A.b.a.b.i.a
American mink	MODERN SPECIES	103	ECPAS (ENSNVIG00000008514)	OR2K2 (ENSNVIG00000008507)	LPAR1 (ENSNVIG00000008494) #8	MUSK (ENSNVIG00000008331) #9	SVEP1 (ENSNVIG00000008123) #10	ENSNVIG00000008030	TXN (ENSNVIG00000008006) #13	C9orf152 (ENSNVIG00000007992) #14	PALM2AKAP2 (ENSNVIG00000007979) #15	ENSNVIG00000007909 #16	ENSNVIG00000007679 #17	ENSNVIG00000007521 #17	EPB41L4B (ENSNVIG00000007422) #19	FRRS1L (ENSNVIG00000007394) #20	TMEM245 (ENSNVIG00000007343) #21	CTNNAL1 (ENSNVIG00000007262) #22	F206A (ENSNVIG00000007243) #23	ELP1 (ENSNVIG00000007095) #24	ACTL7A (ENSNVIG00000007088) #25	ACTL7B (ENSNVIG00000007080) #26	ENSNVIG00000007072	KLF4 (ENSNVIG00000007021) #27	RAD23B (ENSNVIG00000006998) #28	ZNF462 (ENSNVIG00000006964) #29	TM38B (ENSNVIG00000006905) #30	TAL2 (ENSNVIG00000006900) #31	FKTN (ENSNVIG00000006856) #32	FSD1L (ENSNVIG00000006737) #33	SLC44A1 (ENSNVIG00000006652) #34	ABCA1 (ENSNVIG00000006505) #35	NIPSNAP3A (ENSNVIG00000006452) #37
Ferret	MODERN SPECIES	182	PTGR1 (ENSMPUG00000007639)	ENSMPUG00000007633	ECPAS (ENSMPUG00000007607)	OR2K2 (ENSMPUG00000018565)	LPAR1 (ENSMPUG00000007592) #8	MUSK (ENSMPUG00000007465) #9	SVEP1 (ENSMPUG00000007442) #10	ENSMPUG00000007435	TXN (ENSMPUG00000007426) #13	C9orf152 (ENSMPUG00000007416) #14	ENSMPUG00000007406 #16	PTPN3 (ENSMPUG00000007385) #17	EPB41L4B (ENSMPUG00000007365) #19	FRRS1L (ENSMPUG00000007340) #20	TMEM245 (ENSMPUG00000007317) #21	CTNNAL1 (ENSMPUG00000007294) #22	ABITRAM (ENSMPUG00000007283) #23	ELP1 (ENSMPUG00000007255) #24	ACTL7A (ENSMPUG00000018563) #25	ACTL7B (ENSMPUG00000018561) #26	ENSMPUG00000007252	ENSMPUG00000007243	KLF4 (ENSMPUG00000007236) #27	RAD23B (ENSMPUG00000007226) #28	ZNF462 (ENSMPUG00000007211) #29	TMEM38B (ENSMPUG00000007198) #30	FKTN (ENSMPUG00000007187) #32	FSD1L (ENSMPUG00000007163) #33	SLC44A1 (ENSMPUG00000007146) #34	ENSMPUG00000007112 #35	NIPSNAP3B (ENSMPUG00000007103) ##37
Ursidae	ANCESTRAL SPECIES	6	ENSGT00940000162615	ENSGT00940000153612.A	ENSGT01040000240406.A.b.b	ENSGT01050000244941.A #8	ENSGT00940000158226 #9	ENSGT00940000156061 #10	ENSGT00940000162445	ENSGT00940000154259.l.q.a.b.a #13	ENSGT00390000005322 #14	ENSGT00930000151059 #15	ENSGT00940000161837 #16	ENSGT00940000157888 #17	ENSGT00940000158331 #19	ENSGT00940000159043 #20	ENSGT00390000001667 #21	ENSGT01030000234543.F #22	ENSGT00450000040303 #23	ENSGT00390000013344 #24	ENSGT00940000162158 #25	ENSGT00940000162582 #26	ENSGT00940000156229 #27	ENSGT00390000012078.b #28	ENSGT00940000156411 #29	ENSGT00390000018845.e #30	ENSGT00940000160867 #31	ENSGT00390000014471 #32	ENSGT00940000157979 #33	ENSGT00940000157174 #34	ENSGT00980000200950	ENSGT00940000154658.b #35	ENSGT00950000183018.b.k.b ##37
Giant Panda	MODERN SPECIES	17	ZNF483 (ENSAMEG00000017973)	ECPAS (ENSAMEG00000017975)	ENSAMEG00000026060	ENSAMEG00000023996	LPAR1 (ENSAMEG00000017994) #8	MUSK (ENSAMEG00000017995) #9	SVEP1 (ENSAMEG00000018006) #10	ENSAMEG00000026093	ENSAMEG00000029699 #13	C9orf152 (ENSAMEG00000023662) #14	PALM2AKAP2 (ENSAMEG00000018021) #15	PTPN3 (ENSAMEG00000018026) #17	EPB41L4B (ENSAMEG00000018056) #19	FRRS1L (ENSAMEG00000018069) #20	TMEM245 (ENSAMEG00000018070) #21	CTNNAL1 (ENSAMEG00000016876) #22	ABITRAM (ENSAMEG00000016895) #23	ELP1 (ENSAMEG00000016902) #24	ACTL7A (ENSAMEG00000019972) #25	ACTL7B (ENSAMEG00000019973) #26	KLF4 (ENSAMEG00000016954) #27	RAD23B (ENSAMEG00000016970) #28	ZNF462 (ENSAMEG00000017007) #29	TMEM38B (ENSAMEG00000015226) #30	FKTN (ENSAMEG00000015197) #32	FSD1L (ENSAMEG00000015159) #33	SLC44A1 (ENSAMEG00000015137) #34	ENSAMEG00000029391	ABCA1 (ENSAMEG00000005131) #35	NIPSNAP3B (ENSAMEG00000010015) ##37	ENSAMEG00000024816
Ursus	ANCESTRAL SPECIES	33	ENSGT00940000154810	ENSGT00940000162615	ENSGT00940000153612.A	ENSGT01040000240406.A.b.b	ENSGT01050000244941.A #8	ENSGT00940000158226 #9	ENSGT00940000156061 #10	ENSGT00940000162445	ENSGT00940000154259.l.q.a.b.a #13	ENSGT00390000005322 #14	ENSGT00930000151059 #15	ENSGT00940000161837 #16	ENSGT00940000157888 #17	ENSGT00940000158331 #19	ENSGT00390000001667 #21	ENSGT01030000234543.F #22	ENSGT00450000040303 #23	ENSGT00390000013344 #24	ENSGT00940000162158 #25	ENSGT00940000162582 #26	ENSGT00940000156229 #27	ENSGT00390000012078.b #28	ENSGT00940000156411.i #29	ENSGT00390000018845.e #30	ENSGT00940000160867 #31	ENSGT00390000014471 #32	ENSGT00940000157979 #33	ENSGT00940000157174 #34	ENSGT00940000154658.b #35	ENSGT00950000183018.b.k.b ##37	ENSGT00950000183018.b.k.a #37
Polar bear	MODERN SPECIES	311	PTGR1 (ENSUMAG00000019199)	ZNF483 (ENSUMAG00000019195)	ECPAS (ENSUMAG00000018058)	OR2K2 (ENSUMAG00000017725)	LPAR1 (ENSUMAG00000017706) #8	MUSK (ENSUMAG00000017614) #9	SVEP1 (ENSUMAG00000017327) #10	ENSUMAG00000017234	ENSUMAG00000017226 #13	C9orf152 (ENSUMAG00000017222) #14	PALM2AKAP2 (ENSUMAG00000017212) #15	ENSUMAG00000017171 #16	PTPN3 (ENSUMAG00000016663) #17	EPB41L4B (ENSUMAG00000016551) #19	TMEM245 (ENSUMAG00000016484) #21	CTNNAL1 (ENSUMAG00000016247) #22	ABITRAM (ENSUMAG00000016202) #23	ELP1 (ENSUMAG00000014346) #24	ACTL7A (ENSUMAG00000014228) #25	ACTL7B (ENSUMAG00000014225) #26	ENSUMAG00000014214 #27	RAD23B (ENSUMAG00000014140) #28	ZNF462 (ENSUMAG00000014113) #29	TMEM38B (ENSUMAG00000014088) #30	TAL2 (ENSUMAG00000014084) #31	FKTN (ENSUMAG00000014076) #32	FSD1L (ENSUMAG00000014036) #33	SLC44A1 (ENSUMAG00000014026) #34	ABCA1 (ENSUMAG00000013207) #35	NIPSNAP3B (ENSUMAG00000013112) ##37	NIPSNAP3A (ENSUMAG00000013107) #37
American black bear	MODERN SPECIES	1103																ENSUAMG00000026568 #22	ABITRAM (ENSUAMG00000026569) #23	ELP1 (ENSUAMG00000026570) #24	ACTL7A (ENSUAMG00000026571) #25	ACTL7B (ENSUAMG00000026572) #26
Artiodactyla	ANCESTRAL SPECIES	7	ENSGT00940000162615	ENSGT00940000153612.A	ENSGT01040000240406.A.b.b	ENSGT01050000244941.A #8	ENSGT00940000158226 #9	ENSGT00940000156061 #10	ENSGT00940000162445	ENSGT00940000154259.l.q.b.b #13	ENSGT00390000005322 #14	ENSGT00930000151059 #15	ENSGT00940000161837 #16	ENSGT00940000157888 #17	ENSGT00940000158331 #19	ENSGT00940000159043 #20	ENSGT00390000001667 #21	ENSGT01030000234543.F #22	ENSGT00450000040303 #23	ENSGT00390000013344 #24	ENSGT00940000162158 #25	ENSGT00940000162582 #26	ENSGT00940000156229 #27	ENSGT00390000012078.b #28	ENSGT00940000156411 #29	ENSGT00390000018845.e #30	ENSGT00940000160867 #31	ENSGT00390000014471 #32	ENSGT00940000157979 #33	ENSGT00940000157174 #34	ENSGT00940000154658.b #35	ENSGT00950000183018.b.k.b ##37	ENSGT00950000183018.b.k.a #37
Suina	ANCESTRAL SPECIES	23	ENSGT00940000162615	ENSGT00940000153612.A	ENSGT01040000240406.A.b.b	ENSGT01050000244941.A.w #8	ENSGT00940000158226 #9	ENSGT00940000156061 #10	ENSGT00940000162445	ENSGT00940000154259.l.q.b.b #13	ENSGT00390000005322 #14	ENSGT00930000151059 #15	ENSGT00940000161837 #16	ENSGT00940000157888 #17	ENSGT00940000158331 #19	ENSGT00940000159043 #20	ENSGT00390000001667 #21	ENSGT01030000234543.F #22	ENSGT00390000013344 #24	ENSGT00450000040303 #23	ENSGT00940000162158 #25	ENSGT00940000162582 #26	ENSGT00940000156229 #27	ENSGT00390000012078.b #28	ENSGT00940000156411 #29	ENSGT00390000018845.e #30	ENSGT00390000014471 #32	ENSGT00940000157979 #33	ENSGT00940000157174 #34	ENSGT00940000154658.b #35	ENSGT00950000183018.b.k.b.a ##37	ENSGT00950000183018.b.k.a #37	ENSGT01040000240406.A.b.a.b
Chacoan peccary	MODERN SPECIES	887	ZNF483 (ENSCWAG00000019705)	ENSCWAG00000019723	ECPAS (ENSCWAG00000019772)	OR2K2 (ENSCWAG00000019993)	LPAR1 (ENSCWAG00000020004) #8	MUSK (ENSCWAG00000020056) #9	SVEP1 (ENSCWAG00000020300) #10	ENSCWAG00000020350	TXN (ENSCWAG00000020414) #13	C9orf152 (ENSCWAG00000020432) #14	ENSCWAG00000020501 #16	PTPN3 (ENSCWAG00000020591) #17	EPB41L4B (ENSCWAG00000020732) #19	FRRS1L (ENSCWAG00000020802) #20	TMEM245 (ENSCWAG00000020813) #21	CTNNAL1 (ENSCWAG00000020848) #22	ELP1 (ENSCWAG00000020879) #24	ENSCWAG00000020928 #23	ACTL7A (ENSCWAG00000020943) #25	ACTL7B (ENSCWAG00000020950) #26	KLF4 (ENSCWAG00000011684) #27	ENSCWAG00000011795	RAD23B (ENSCWAG00000011869) #28	ZNF462 (ENSCWAG00000011929) #29	TMEM38B (ENSCWAG00000011994) #30	FKTN (ENSCWAG00000012077) #32	FSD1L (ENSCWAG00000012177) #33	SLC44A1 (ENSCWAG00000012312) #34	ABCA1 (ENSCWAG00000012416) #35	ENSCWAG00000012902 ##37	ENSCWAG00000013026 ##37
Artiodactyla_a	ANCESTRAL SPECIES	6	ENSGT00940000154740.a.a.c.a	ENSGT00940000153612.A	ENSGT01040000240406.A.b.b	ENSGT01050000244941.A #8	ENSGT00940000158226 #9	ENSGT00940000156061 #10	ENSGT00940000162445	ENSGT00940000154259.l.q.b.b #13	ENSGT00390000005322 #14	ENSGT00930000151059 #15	ENSGT00940000161837 #16	ENSGT00940000157888 #17	ENSGT00940000158331 #19	ENSGT00940000159043 #20	ENSGT00390000001667 #21	ENSGT01030000234543.F #22	ENSGT00450000040303 #23	ENSGT00390000013344 #24	ENSGT00940000162158 #25	ENSGT00940000162582 #26	ENSGT00940000156229 #27	ENSGT00390000012078.b #28	ENSGT00940000156411 #29	ENSGT00390000018845.e #30	ENSGT00940000160867 #31	ENSGT00390000014471 #32	ENSGT00940000157979 #33	ENSGT00940000157174 #34	ENSGT00940000154658.b #35	ENSGT00950000183018.b.k.b ##37	ENSGT00950000183018.b.k.a #37
Artiodactyla_b	ANCESTRAL SPECIES	7	ENSGT00940000154740.a.a.c.a	ENSGT00940000153612.A	ENSGT01040000240406.A.b.b	ENSGT01050000244941.A #8	ENSGT00940000158226 #9	ENSGT00940000156061 #10	ENSGT00940000162445	ENSGT00940000154259.l.q.b.b #13	ENSGT00390000005322 #14	ENSGT00930000151059 #15	ENSGT00940000161837 #16	ENSGT00940000157888 #17	ENSGT00940000158331 #19	ENSGT00940000159043 #20	ENSGT00390000001667 #21	ENSGT01030000234543.F #22	ENSGT00450000040303 #23	ENSGT00390000013344 #24	ENSGT00940000162158 #25	ENSGT00940000162582 #26	ENSGT00940000156229.k.a #27	ENSGT00390000012078.b #28	ENSGT00940000156411 #29	ENSGT00390000018845.e #30	ENSGT00940000160867 #31	ENSGT00390000014471 #32	ENSGT00940000157979 #33	ENSGT00940000157174 #34	ENSGT00940000154658.b #35	ENSGT00950000183018.b.k.b ##37	ENSGT00950000183018.b.k.a #37
Pecora	ANCESTRAL SPECIES	29	ENSGT00940000154740.a.a.c.a	ENSGT00940000153612.A	ENSGT01040000240406.A.b.b	ENSGT01050000244941.A #8	ENSGT00940000158226 #9	ENSGT00940000156061 #10	ENSGT00940000162445	ENSGT00940000154259.l.q.b.b #13	ENSGT00390000005322 #14	ENSGT00930000151059 #15	ENSGT00940000161837 #16	ENSGT00940000157888 #17	ENSGT00940000158331 #19	ENSGT00940000159043 #20	ENSGT00390000001667 #21	ENSGT01030000234543.F #22	ENSGT00450000040303 #23	ENSGT00390000013344 #24	ENSGT00940000162158 #25	ENSGT00940000162582 #26	ENSGT00940000156229.k.a #27	ENSGT00390000012078.b #28	ENSGT00940000156411 #29	ENSGT00390000018845.e #30	ENSGT00940000160867 #31	ENSGT00390000014471 #32	ENSGT00940000157979 #33	ENSGT00940000157174 #34	ENSGT00940000154658.b #35	ENSGT00950000183018.b.k.a #37	ENSGT01040000240406.A.b.a.b
Percora_a	ANCESTRAL SPECIES	29	ENSGT00940000154740.a.a.c.a	ENSGT00940000153612.A	ENSGT01040000240406.A.b.b	ENSGT01050000244941.A #8	ENSGT00940000158226 #9	ENSGT00940000156061 #10	ENSGT00940000162445	ENSGT00940000154259.l.q.b.b #13	ENSGT00390000005322 #14	ENSGT00930000151059 #15	ENSGT00940000161837 #16	ENSGT00940000157888 #17	ENSGT00940000158331 #19	ENSGT00940000159043 #20	ENSGT00390000001667 #21	ENSGT01030000234543.F #22	ENSGT00450000040303 #23	ENSGT00390000013344 #24	ENSGT00940000162158 #25	ENSGT00940000162582 #26	ENSGT00940000156229.k.a #27	ENSGT00940000156229.l #27	ENSGT00390000012078.b #28	ENSGT00940000156411 #29	ENSGT00390000018845.e #30	ENSGT00940000160867 #31	ENSGT00390000014471 #32	ENSGT00940000157979 #33	ENSGT00940000157174 #34	ENSGT00940000154658.b #35	ENSGT00950000183018.b.k.a #37
Bovidae	ANCESTRAL SPECIES	14	ENSGT00940000153612.A	ENSGT01040000240406.A.b.b	ENSGT01050000244941.A #8	ENSGT00940000158226 #9	ENSGT00940000156061 #10	ENSGT00940000162445	ENSGT00940000154259.l.q.b.b #13	ENSGT00390000005322 #14	ENSGT00930000151059 #15	ENSGT00940000161837 #16	ENSGT00940000157888 #17	ENSGT00940000158331 #19	ENSGT00390000016760.c.a.a.b	ENSGT00940000159043 #20	ENSGT00390000001667 #21	ENSGT01030000234543.F #22	ENSGT00450000040303 #23	ENSGT00390000013344 #24	ENSGT00940000162158 #25	ENSGT00940000162582 #26	ENSGT00940000156229.k.a #27	ENSGT00390000012078.b #28	ENSGT00940000156411 #29	ENSGT00390000018845.e #30	ENSGT00940000160867 #31	ENSGT00390000014471 #32	ENSGT00940000157979 #33	ENSGT00940000157174 #34	ENSGT00940000154658.b #35	ENSGT00950000183018.b.k.a #37	ENSGT01040000240406.A.b.a.b
Bovinae	ANCESTRAL SPECIES	14	ENSGT00940000153612.A	ENSGT01040000240406.A.b.b	ENSGT01050000244941.A #8	ENSGT00940000158226 #9	ENSGT00940000156061 #10	ENSGT00940000162445	ENSGT00940000154259.l.q.b.b #13	ENSGT00390000005322 #14	ENSGT00930000151059 #15	ENSGT00940000161837 #16	ENSGT00940000157888 #17	ENSGT00940000158331 #19	ENSGT00390000016760.c.a.a.b	ENSGT00940000159043 #20	ENSGT00390000001667 #21	ENSGT01030000234543.F #22	ENSGT00450000040303 #23	ENSGT00390000013344 #24	ENSGT00940000162158 #25	ENSGT00940000162582 #26	ENSGT00550000074801.g.a	ENSGT00940000156229.k.a #27	ENSGT00390000012078.b.u #28	ENSGT00940000156411 #29	ENSGT00390000018845.e #30	ENSGT00940000153700.ub.a.b	ENSGT00940000160867 #31	ENSGT00390000014471 #32	ENSGT00940000157979 #33	ENSGT00940000157174 #34	ENSGT00940000154658.b #35
Bos	ANCESTRAL SPECIES	10	ENSGT00940000153612.A	ENSGT01040000240406.A.b.b	ENSGT01050000244941.A #8	ENSGT00940000158226 #9	ENSGT00940000156061 #10	ENSGT00940000162445	ENSGT00940000154259.l.q.b.b #13	ENSGT00390000005322 #14	ENSGT00930000151059 #15	ENSGT00940000161837 #16	ENSGT00940000157888 #17	ENSGT00940000158331 #19	ENSGT00390000016760.c.a.a.b	ENSGT00940000159043 #20	ENSGT00390000001667 #21	ENSGT01030000234543.F #22	ENSGT00450000040303 #23	ENSGT00390000013344 #24	ENSGT00940000162158 #25	ENSGT00940000162582 #26	ENSGT00550000074801.g.a	ENSGT00940000156229.k.a #27	ENSGT00390000012078.b.u #28	ENSGT00940000156411 #29	ENSGT00390000018845.e #30	ENSGT00940000153700.ub.a.b	ENSGT00940000160867 #31	ENSGT00390000014471.n #32	ENSGT01100000263480.a.a.b.a.b.b.b.b.a.b	ENSGT00940000157979 #33	ENSGT00940000157174 #34
Bos_b	ANCESTRAL SPECIES	37	ENSGT00940000153612.A	ENSGT01040000240406.A.b.b	ENSGT01050000244941.A #8	ENSGT00940000158226 #9	ENSGT00940000156061 #10	ENSGT00940000162445	ENSGT00940000154259.l.q.b.b #13	ENSGT00390000005322 #14	ENSGT00930000151059 #15	ENSGT00940000161837 #16	ENSGT00940000157888 #17	ENSGT00940000158331 #19	ENSGT00390000016760.c.a.a.b	ENSGT00940000159043 #20	ENSGT00390000001667 #21	ENSGT01030000234543.F #22	ENSGT00450000040303 #23	ENSGT00390000013344 #24	ENSGT00940000162158 #25	ENSGT00940000162582 #26	ENSGT00550000074801.g.a	ENSGT00940000156229.k.a #27	ENSGT00390000012078.b.u #28	ENSGT00940000156411 #29	ENSGT00390000018845.e #30	ENSGT00940000153700.ub.a.b	ENSGT00940000160867 #31	ENSGT00390000014471.n #32	ENSGT01100000263480.a.a.b.a.b.b.b.b.a.b	ENSGT00940000157979 #33	ENSGT00940000157174 #34
Cow	MODERN SPECIES	27	ECPAS (ENSBTAG00000006712)	OR2K2 (ENSBTAG00000010686)	LPAR1 (ENSBTAG00000009654) #8	MUSK (ENSBTAG00000002744) #9	SVEP1 (ENSBTAG00000020243) #10	TXNDC8 (ENSBTAG00000010535)	TXN (ENSBTAG00000002953) #13	C8H9orf152 (ENSBTAG00000003240) #14	PALM2 (ENSBTAG00000014471) #16	PTPN3 (ENSBTAG00000018841) #17	ENSBTAG00000048854	EPB41L4B (ENSBTAG00000017063) #19	FRRS1L (ENSBTAG00000017936) #20	TMEM245 (ENSBTAG00000038794) #21	ENSBTAG00000051855	CTNNAL1 (ENSBTAG00000004997) #22	ABITRAM (ENSBTAG00000004996) #23	ELP1 (ENSBTAG00000004991) #24	ACTL7A (ENSBTAG00000019468) #25	ACTL7B (ENSBTAG00000019467) #26	ENSBTAG00000000885	KLF4 (ENSBTAG00000020355) #27	RAD23B (ENSBTAG00000001926) #28	ZNF462 (ENSBTAG00000019187) #29	TMEM38B (ENSBTAG00000034867) #30	ENSBTAG00000046079	TAL2 (ENSBTAG00000045852) #31	FKTN (ENSBTAG00000010247) #32	FSD1L (ENSBTAG00000013420) #33	SLC44A1 (ENSBTAG00000007163) #34	ABCA1 (ENSBTAG00000020661) #35
Hybrid Bos Indicus	MODERN SPECIES	27	ENSBIXG00005012056	ENSBIXG00005001251	LPAR1 (ENSBIXG00005012112) #8	MUSK (ENSBIXG00005012161) #9	ENSBIXG00005012228	SVEP1 (ENSBIXG00005012398) #10	ENSBIXG00005001334	TXN (ENSBIXG00005012502) #13	C9orf152 (ENSBIXG00005006606) #14	PALM2AKAP2 (ENSBIXG00005001386) #15	PTPN3 (ENSBIXG00005012694) #17	ENSBIXG00005012733	EPB41L4B (ENSBIXG00005012891) #19	FRRS1L (ENSBIXG00005001465) #20	TMEM245 (ENSBIXG00005007480) #21	CTNNAL1 (ENSBIXG00005013056) #22	ABITRAM (ENSBIXG00005006334) #23	ELP1 (ENSBIXG00005013130) #24	ACTL7A (ENSBIXG00005001506) #25	ACTL7B (ENSBIXG00005013150) #26	ENSBIXG00005013170	ENSBIXG00005013228 #27	ENSBIXG00005001513 #28	ZNF462 (ENSBIXG00005013271) #29	TMEM38B (ENSBIXG00005007263) #30	TAL2 (ENSBIXG00005001578) #31	FKTN (ENSBIXG00005013381) #32	ENSBIXG00005013394	FSD1L (ENSBIXG00005001615) #33	SLC44A1 (ENSBIXG00005013552) #34	ABCA1 (ENSBIXG00005013615) #35
Bos_a	ANCESTRAL SPECIES	20	ENSGT00940000153612.A	ENSGT01040000240406.A.b.b	ENSGT01050000244941.A #8	ENSGT00940000158226 #9	ENSGT00940000156061 #10	ENSGT00940000162445	ENSGT00940000154259.l.q.b.b #13	ENSGT00390000005322 #14	ENSGT00930000151059 #15	ENSGT00940000161837 #16	ENSGT00940000157888 #17	ENSGT00940000158331 #19	ENSGT00390000016760.c.a.a.b	ENSGT00940000159043 #20	ENSGT00390000001667 #21	ENSGT01030000234543.F #22	ENSGT00450000040303 #23	ENSGT00390000013344 #24	ENSGT00940000162158 #25	ENSGT00940000162582 #26	ENSGT00550000074801.g.a	ENSGT00940000156229.k.a #27	ENSGT00390000012078.b.u #28	ENSGT00940000156411 #29	ENSGT00390000018845.e #30	ENSGT00940000153700.ub.a.b	ENSGT00940000160867 #31	ENSGT00390000014471.n #32	ENSGT01100000263480.a.a.b.a.b.b.b.b.a.b	ENSGT00940000157979 #33	ENSGT00940000157174 #34
Domestic yak	MODERN SPECIES	26	LPAR1 (ENSBGRG00000003480) #8	MUSK (ENSBGRG00000003244) #9	SVEP1 (ENSBGRG00000002989) #10	ENSBGRG00000002929	ENSBGRG00000002894 #13	C9orf152 (ENSBGRG00000002874) #14	PALM2AKAP2 (ENSBGRG00000002855) #15	ENSBGRG00000002825 #16	PTPN3 (ENSBGRG00000002691) #17	ENSBGRG00000002652	ENSBGRG00000002645	EPB41L4B (ENSBGRG00000002536) #19	FRRS1L (ENSBGRG00000002503) #20	TMEM245 (ENSBGRG00000002453) #21	ENSBGRG00000002441	CTNNAL1 (ENSBGRG00000002316) #22	ABITRAM (ENSBGRG00000002250) #23	ELP1 (ENSBGRG00000002162) #24	ACTL7A (ENSBGRG00000002145) #25	ACTL7B (ENSBGRG00000002132) #26	ENSBGRG00000002114	KLF4 (ENSBGRG00000002035) #27	RAD23B (ENSBGRG00000001998) #28	ZNF462 (ENSBGRG00000001958) #29	ENSBGRG00000001952	TMEM38B (ENSBGRG00000001913) #30	ENSBGRG00000001899	FKTN (ENSBGRG00000001805) #32	ENSBGRG00000001787	FSD1L (ENSBGRG00000001636) #33	ENSBGRG00000001591
American bison	MODERN SPECIES	3104	LPAR1 (ENSBBBG00000022319) #8	ENSBBBG00000005886	MUSK (ENSBBBG00000022436) #9	ENSBBBG00000007527	SVEP1 (ENSBBBG00000022798) #10	ENSBBBG00000022829	TXN (ENSBBBG00000022850) #13	C9orf152 (ENSBBBG00000022856) #14	PALM2AKAP2 (ENSBBBG00000022860) #15	ENSBBBG00000022897 #16	PTPN3 (ENSBBBG00000023027) #17	ENSBBBG00000023041	EPB41L4B (ENSBBBG00000023101) #19	FRRS1L (ENSBBBG00000023138) #20	TMEM245 (ENSBBBG00000023171) #21	CTNNAL1 (ENSBBBG00000000468) #22	ABITRAM (ENSBBBG00000000448) #23	ELP1 (ENSBBBG00000000354) #24	ACTL7A (ENSBBBG00000000336) #25	ACTL7B (ENSBBBG00000000332) #26	ENSBBBG00000000324	ENSBBBG00000023186 #27	ENSBBBG00000023200 #28	ZNF462 (ENSBBBG00000006087) #29	TMEM38B (ENSBBBG00000023293) #30	ENSBBBG00000023309	TAL2 (ENSBBBG00000006095) #31	FKTN (ENSBBBG00000007481) #32	FSD1L (ENSBBBG00000023460) #33	SLC44A1 (ENSBBBG00000023558) #34	ABCA1 (ENSBBBG00000023632) #35
Caprinae	ANCESTRAL SPECIES	14	ENSGT00940000153612.A	ENSGT01040000240406.A.b.b	ENSGT01050000244941.A #8	ENSGT00940000158226 #9	ENSGT00940000156061 #10	ENSGT00940000162445	ENSGT00940000154259.l.q.b.b #13	ENSGT00390000005322 #14	ENSGT00930000151059 #15	ENSGT00940000161837 #16	ENSGT00940000157888 #17	ENSGT00940000158331 #19	ENSGT00390000016760.c.a.a.b	ENSGT00940000159043 #20	ENSGT00390000001667 #21	ENSGT01030000234543.F #22	ENSGT00450000040303 #23	ENSGT00390000013344 #24	ENSGT00940000162158 #25	ENSGT00940000162582 #26	ENSGT00940000156229.k.a #27	ENSGT00390000012078.b #28	ENSGT00940000156411 #29	ENSGT00550000074846.ab.b	ENSGT00390000018845.e #30	ENSGT00940000160867 #31	ENSGT00390000014471 #32	ENSGT00940000157979 #33	ENSGT00940000157174 #34	ENSGT00940000154658.b #35	ENSGT00950000183018.b.k.a #37
Rambouillet Sheep	MODERN SPECIES	11	ENSOARG00020000144	ECPAS (ENSOARG00020000236)	OR2K2 (ENSOARG00020000629)	LPAR1 (ENSOARG00020000672) #8	MUSK (ENSOARG00020000710) #9	SVEP1 (ENSOARG00020000799) #10	TXNDC8 (ENSOARG00020001073)	ENSOARG00020001199 #16	TXN (ENSOARG00020001360) #13	C9orf152 (ENSOARG00020001379) #14	PTPN3 (ENSOARG00020001469) #17	EPB41L4B (ENSOARG00020001692) #19	ENSOARG00020001762	FRRS1L (ENSOARG00020001767) #20	TMEM245 (ENSOARG00020001785) #21	CTNNAL1 (ENSOARG00020001849) #22	ABITRAM (ENSOARG00020001944) #23	ELP1 (ENSOARG00020001982) #24	ACTL7A (ENSOARG00020002049) #25	ACTL7B (ENSOARG00020002055) #26	ENSOARG00020002084 #27	RAD23B (ENSOARG00020002134) #28	ZNF462 (ENSOARG00020002167) #29	ENSOARG00020002259	TMEM38B (ENSOARG00020002286) #30	ENSOARG00020002304	FKTN (ENSOARG00020002326) #32	FSD1L (ENSOARG00020002376) #33	SLC44A1 (ENSOARG00020002424) #34	ENSOARG00020002669	ABCA1 (ENSOARG00020002682) #35
Goat	MODERN SPECIES	27	OR2K2 (ENSCHIG00000024856)	LPAR1 (ENSCHIG00000021183) #8	MUSK (ENSCHIG00000021059) #9	SVEP1 (ENSCHIG00000025957) #10	TXNDC8 (ENSCHIG00000026190)	TXN (ENSCHIG00000013447) #13	C9orf152 (ENSCHIG00000023217) #14	PALM2AKAP2 (ENSCHIG00000011730) #15	ENSCHIG00000025448 #16	ENSCHIG00000013623	PTPN3 (ENSCHIG00000019167) #17	ENSCHIG00000004878	EPB41L4B (ENSCHIG00000002945) #19	FRRS1L (ENSCHIG00000017152) #20	TMEM245 (ENSCHIG00000025870) #21	CTNNAL1 (ENSCHIG00000011937) #22	ENSCHIG00000002191 #23	ELP1 (ENSCHIG00000024936) #24	ACTL7A (ENSCHIG00000002414) #25	ACTL7B (ENSCHIG00000003048) #26	ENSCHIG00000017196 #27	RAD23B (ENSCHIG00000022567) #28	ZNF462 (ENSCHIG00000008945) #29	ENSCHIG00000008581	ENSCHIG00000021816	ENSCHIG00000014582	TMEM38B (ENSCHIG00000014855) #30	TAL2 (ENSCHIG00000012345) #31	FKTN (ENSCHIG00000009292) #32	ENSCHIG00000010528	FSD1L (ENSCHIG00000023178) #33
Yarkand deer	MODERN SPECIES	7	ECPAS (ENSCHYG00000008156)	LPAR1 (ENSCHYG00000008091) #8	MUSK (ENSCHYG00000007616) #9	SVEP1 (ENSCHYG00000007229) #10	TXNDC8 (ENSCHYG00000007029)	ENSCHYG00000006949 #13	C9orf152 (ENSCHYG00000006922) #14	ENSCHYG00000006895	ENSCHYG00000006654 #16	PTPN3 (ENSCHYG00000006180) #17	ENSCHYG00000006138	ENSCHYG00000006129	EPB41L4B (ENSCHYG00000006064) #19	FRRS1L (ENSCHYG00000006000) #20	TMEM245 (ENSCHYG00000005674) #21	CTNNAL1 (ENSCHYG00000005573) #22	ABITRAM (ENSCHYG00000005521) #23	ELP1 (ENSCHYG00000005409) #24	ACTL7A (ENSCHYG00000005384) #25	ACTL7B (ENSCHYG00000005375) #26	ENSCHYG00000005293 #27	ENSCHYG00000005257 #28	ZNF462 (ENSCHYG00000005203) #29	TMEM38B (ENSCHYG00000005131) #30	TAL2 (ENSCHYG00000005105) #31	FKTN (ENSCHYG00000005049) #32	FSD1L (ENSCHYG00000004973) #33	ENSCHYG00000004942	SLC44A1 (ENSCHYG00000004884) #34	ABCA1 (ENSCHYG00000004845) #35	NIPSNAP3A (ENSCHYG00000004835) #37
Cetacea	ANCESTRAL SPECIES	9	ENSGT00940000153612.A	ENSGT01050000244941.A #8	ENSGT00940000158226 #9	ENSGT00940000156061 #10	ENSGT00940000162445	ENSGT00940000154259.l.q.b.a.b.a.a #13	ENSGT00940000154259.l.q.b.a.b.b #13	ENSGT00390000005322 #14	ENSGT00930000151059 #15	ENSGT00790000123099.ac	ENSGT00390000001319.nb.b	ENSGT00940000157888 #17	ENSGT00940000158331 #19	ENSGT00940000159043 #20	ENSGT00390000001667 #21	ENSGT01030000234543.F #22	ENSGT00450000040303.i.a #23	ENSGT00390000013344.t #24	ENSGT00450000040303.i.b #23	ENSGT00390000013344.s #24	ENSGT00940000162158 #25	ENSGT00940000162582 #26	ENSGT00390000015600.c.a.o	ENSGT00390000005254.i.a.b	ENSGT00940000156229.k.a #27	ENSGT00390000012078.b.r #28	ENSGT00940000156411 #29	ENSGT00390000018845.e #30	ENSGT00940000160867 #31	ENSGT00390000014471 #32	ENSGT00940000157979 #33
Odontoceti	ANCESTRAL SPECIES	8	ENSGT00940000153612.A	ENSGT01050000244941.A #8	ENSGT00940000158226 #9	ENSGT00940000156061 #10	ENSGT00940000162445	ENSGT00940000154259.l.q.b.a.b.a.b #13	ENSGT00390000005322 #14	ENSGT00930000151059 #15	ENSGT00940000161837 #16	ENSGT00790000123099.ac	ENSGT00390000001319.nb.b	ENSGT00940000157888 #17	ENSGT00940000158331 #19	ENSGT00940000159043 #20	ENSGT00390000001667 #21	ENSGT01030000234543.F #22	ENSGT00450000040303.i.a.a.b #23	ENSGT00390000013344.t #24	ENSGT00450000040303.i.b #23	ENSGT00390000013344.s #24	ENSGT00940000162158 #25	ENSGT00940000162582 #26	ENSGT00390000015600.c.a.o	ENSGT00390000005254.i.a.b.d	ENSGT00940000156229.k.a #27	ENSGT00390000012078.b.r #28	ENSGT00390000012078.b.q #28	ENSGT00940000156411 #29	ENSGT00390000018845.e #30	ENSGT00940000160867 #31	ENSGT00390000014471 #32
Odontoceti_a	ANCESTRAL SPECIES	15	ENSGT00940000153612.A	ENSGT01050000244941.A #8	ENSGT00940000158226 #9	ENSGT00940000156061 #10	ENSGT00940000162445	ENSGT00940000154259.l.q.b.a.b.b #13	ENSGT00390000005322 #14	ENSGT00930000151059 #15	ENSGT00940000161837 #16	ENSGT00790000123099.ac	ENSGT00390000001319.nb.b	ENSGT00940000157888 #17	ENSGT00940000158331 #19	ENSGT00940000159043 #20	ENSGT00390000001667 #21	ENSGT01030000234543.F #22	ENSGT00450000040303.i.a.a.b #23	ENSGT00390000013344.t #24	ENSGT00450000040303.i.b #23	ENSGT00390000013344.s #24	ENSGT00940000162158.g #25	ENSGT00940000162582.a #26	ENSGT00390000015600.c.a.o	ENSGT00940000156229.k.a #27	ENSGT00390000012078.b.r #28	ENSGT00940000156411 #29	ENSGT00940000155366.a.hb.a	ENSGT00390000018845.e #30	ENSGT00940000160867 #31	ENSGT00390000014471 #32	ENSGT00940000157979 #33
Odontoceti_b	ANCESTRAL SPECIES	8	ENSGT00940000153612.A	ENSGT01050000244941.A #8	ENSGT00940000158226 #9	ENSGT00940000156061 #10	ENSGT00940000162445	ENSGT00940000154259.l.q.b.a.b.b #13	ENSGT00390000005322 #14	ENSGT00930000151059 #15	ENSGT00940000161837 #16	ENSGT00790000123099.ac	ENSGT00390000001319.nb.b	ENSGT00940000157888 #17	ENSGT00940000158331 #19	ENSGT00940000159043 #20	ENSGT00390000001667 #21	ENSGT01030000234543.F #22	ENSGT00450000040303.i.a.a.b.b #23	ENSGT00450000040303.i.b #23	ENSGT00390000013344.s #24	ENSGT00940000162158.g #25	ENSGT00940000162582.a #26	ENSGT00390000015600.c.a.o	ENSGT00940000156229.k.a #27	ENSGT00390000012078.b.r #28	ENSGT00950000182901.a.a.b.b.a.a.d	ENSGT00940000156411 #29	ENSGT00940000155366.a.hb.a	ENSGT00390000018845.e #30	ENSGT00940000160867 #31	ENSGT00390000014471 #32	ENSGT00940000157979 #33
Monodontidae	ANCESTRAL SPECIES	5	ENSGT00940000162615	ENSGT00940000153612.A	ENSGT01050000244941.A #8	ENSGT00940000158226 #9	ENSGT00940000156061 #10	ENSGT00940000162445	ENSGT00940000154259.l.q.b.a.b.b #13	ENSGT00390000005322 #14	ENSGT00940000161837 #16	ENSGT00790000123099.ac	ENSGT00390000001319.nb.b	ENSGT00940000157888 #17	ENSGT00940000158331 #19	ENSGT00940000159043 #20	ENSGT00390000001667 #21	ENSGT01030000234543.F #22	ENSGT00450000040303.i.a.a.b.b #23	ENSGT00390000013344.s #24	ENSGT00940000162158.g #25	ENSGT00940000162582.a #26	ENSGT00390000015600.c.a.o	ENSGT00940000156229.k.a #27	ENSGT00390000012078.b.r #28	ENSGT00950000182901.a.a.b.b.a.a.d	ENSGT00940000156411 #29	ENSGT00940000155366.a.hb.a	ENSGT00390000018845.e #30	ENSGT00940000160867 #31	ENSGT00390000014471 #32	ENSGT00940000157979 #33	ENSGT00940000157174 #34
Narwhal	MODERN SPECIES	312	ZNF483 (ENSMMNG00015019363)	ECPAS (ENSMMNG00015019222)	LPAR1 (ENSMMNG00015019104) #8	MUSK (ENSMMNG00015018880) #9	SVEP1 (ENSMMNG00015018740) #10	ENSMMNG00015018628	ENSMMNG00015018572 #13	C9orf152 (ENSMMNG00015018536) #14	ENSMMNG00015018334 #16	ENSMMNG00015018173	ENSMMNG00015018159	PTPN3 (ENSMMNG00015017954) #17	EPB41L4B (ENSMMNG00015017649) #19	FRRS1L (ENSMMNG00015017590) #20	TMEM245 (ENSMMNG00015017484) #21	CTNNAL1 (ENSMMNG00015017390) #22	ENSMMNG00015017369 #25	ENSMMNG00015017350 #26	ENSMMNG00015017328	ENSMMNG00015017315	KLF4 (ENSMMNG00015017268) #27	ENSMMNG00015017216 #28	ENSMMNG00015017196	ZNF462 (ENSMMNG00015017137) #29	ENSMMNG00015017099	TMEM38B (ENSMMNG00015016987) #30	TAL2 (ENSMMNG00015016959) #31	FKTN (ENSMMNG00015016876) #32	FSD1L (ENSMMNG00015016595) #33	ENSMMNG00015016537	SLC44A1 (ENSMMNG00015016458) #34
Vaquita	MODERN SPECIES	17	LPAR1 (ENSPSNG00000012287) #8	MUSK (ENSPSNG00000012408) #9	ENSPSNG00000013016 #10	ENSPSNG00000013248	ENSPSNG00000013559 #13	C9orf152 (ENSPSNG00000013653) #14	PALM2AKAP2 (ENSPSNG00000013756) #15	ENSPSNG00000013958	ENSPSNG00000014013	PTPN3 (ENSPSNG00000014076) #17	EPB41L4B (ENSPSNG00000014333) #19	ENSPSNG00000014959	ENSPSNG00000015018	FRRS1L (ENSPSNG00000015057) #20	TMEM245 (ENSPSNG00000015113) #21	CTNNAL1 (ENSPSNG00000015319) #22	ENSPSNG00000015464 #23	ENSPSNG00000015561	ENSPSNG00000015579	ENSPSNG00000015628 #24	ENSPSNG00000015717 #23	ENSPSNG00000015757 #25	ACTL7B (ENSPSNG00000015822) #26	ENSPSNG00000015847	ENSPSNG00000015883	KLF4 (ENSPSNG00000006134) #27	RAD23B (ENSPSNG00000006231) #28	ENSPSNG00000006277	ZNF462 (ENSPSNG00000006317) #29	ENSPSNG00000006389	ENSPSNG00000006434
Dolphin	MODERN SPECIES	2899												PTPN3 (ENSTTRG00000000420) #17	EPB41L4B (ENSTTRG00000000418) #19	FRRS1L (ENSTTRG00000000417) #20	TMEM245 (ENSTTRG00000000416) #21	CTNNAL1 (ENSTTRG00000000415) #22	ENSTTRG00000000414 #23	ENSTTRG00000000413 #23	ENSTTRG00000000411 #24	ACTL7A (ENSTTRG00000000410) #25	ACTL7B (ENSTTRG00000000409) #26
Sperm whale	MODERN SPECIES	20	ZNF483 (ENSPCTG00005012775)	ECPAS (ENSPCTG00005012838)	LPAR1 (ENSPCTG00005013199) #8	MUSK (ENSPCTG00005013297) #9	SVEP1 (ENSPCTG00005014158) #10	ENSPCTG00005014360	TXN (ENSPCTG00005014587) #13	C9H9orf152 (ENSPCTG00005014711) #14	ENSPCTG00005014777 #16	ENSPCTG00005015246	ENSPCTG00005015288	PTPN3 (ENSPCTG00005015329) #17	EPB41L4B (ENSPCTG00005015574) #19	FRRS1L (ENSPCTG00005016066) #20	TMEM245 (ENSPCTG00005016137) #21	CTNNAL1 (ENSPCTG00005016382) #22	ENSPCTG00005016554 #23	ENSPCTG00005016609 #23	ENSPCTG00005016694 #24	ENSPCTG00005016817 #23	ACTL7A (ENSPCTG00005016913) #25	ACTL7B (ENSPCTG00005016927) #26	ENSPCTG00005016945	ENSPCTG00005016962	KLF4 (ENSPCTG00005017002) #27	RAD23B (ENSPCTG00005017096) #28	ZNF462 (ENSPCTG00005017232) #29	TMEM38B (ENSPCTG00005017345) #30	TAL2 (ENSPCTG00005017406) #31	FKTN (ENSPCTG00005017444) #32	FSD1L (ENSPCTG00005017554) #33
Blue whale	DUPLICATION
Blue whale	MODERN SPECIES	17	ENSBMSG00010005285	ENSBMSG00010005277	LPAR1 (ENSBMSG00010005262) #8	MUSK (ENSBMSG00010005164) #9	SVEP1 (ENSBMSG00010005071) #10	ENSBMSG00010005021	ENSBMSG00010005005 #13	C9orf152 (ENSBMSG00010004997) #14	PALM2AKAP2 (ENSBMSG00010004905) #15	ENSBMSG00010004868	ENSBMSG00010004865	PTPN3 (ENSBMSG00010004820) #17	EPB41L4B (ENSBMSG00010004773) #19	FRRS1L (ENSBMSG00010004752) #20	TMEM245 (ENSBMSG00010004728) #21	ENSBMSG00010004705 #22	ENSBMSG00010004692 #23	ELP1 (ENSBMSG00010004684) #24	ENSBMSG00010004678 #23	ACTL7A (ENSBMSG00010004670) #25	ACTL7B (ENSBMSG00010004666) #26	ENSBMSG00010004658	ENSBMSG00010004650	ENSBMSG00010004642	ENSBMSG00010004626 #27	ENSBMSG00010004608 #28	ZNF462 (ENSBMSG00010004577) #29	ENSBMSG00010004562	ENSBMSG00010004552	TMEM38B (ENSBMSG00010004523) #30	TAL2 (ENSBMSG00010004504) #31
Blue whale	MODERN SPECIES		SLC35A3 (ENSBMSG00010002633)	MFSD14A (ENSBMSG00010003164)	SASS6 (ENSBMSG00010003211)	TRMT13 (ENSBMSG00010003252)	LRRC39 (ENSBMSG00010003331)	DBT (ENSBMSG00010003342)	RTCA (ENSBMSG00010003361)	CDC14A (ENSBMSG00010003418)	GPR88 (ENSBMSG00010003474)	ENSBMSG00010003498	EXTL2 (ENSBMSG00010003690)	SLC30A7 (ENSBMSG00010003707)	DPH5 (ENSBMSG00010003725)	ENSBMSG00010003742	ENSBMSG00010003751	ENSBMSG00010003754 #22	S1PR1 (ENSBMSG00010003770)	ENSBMSG00010003778	OLFM3 (ENSBMSG00010003798)	ENSBMSG00010003840	COL11A1 (ENSBMSG00010003909)	ENSBMSG00010004098	RNPC3 (ENSBMSG00010004114)	ENSBMSG00010004127	ENSBMSG00010004150	ENSBMSG00010004162	PRMT6 (ENSBMSG00010004173)	NTNG1 (ENSBMSG00010004205)	VAV3 (ENSBMSG00010004383)	ENSBMSG00010004441	SLC25A24 (ENSBMSG00010004461)
Camelidae	ANCESTRAL SPECIES	5	ENSGT00940000154740.a.a.c.a	ENSGT00940000153612.A	ENSGT01040000240406.A.b.b	ENSGT01050000244941.A #8	ENSGT00940000158226 #9	ENSGT00940000156061 #10	ENSGT00940000162445	ENSGT00940000154259.l.q.a.a #13	ENSGT00940000154259.l.q.a.b #13	ENSGT00390000005322 #14	ENSGT00940000161837 #16	ENSGT00940000157888 #17	ENSGT00940000158331 #19	ENSGT00940000159043 #20	ENSGT00390000001667 #21	ENSGT01030000234543.F #22	ENSGT00450000040303 #23	ENSGT00390000013344 #24	ENSGT00940000162158 #25	ENSGT00940000162582 #26	ENSGT00940000156229 #27	ENSGT00390000012078.b #28	ENSGT00940000156411 #29	ENSGT00390000018845.e #30	ENSGT00940000160867 #31	ENSGT00390000014471 #32	ENSGT00940000157979 #33	ENSGT00940000157174 #34	ENSGT00940000154658.b #35	ENSGT00950000183018.b.k.b ##37	ENSGT00950000183018.b.k.a #37
Arabian camel	MODERN SPECIES	30	ZNF483 (ENSCDRG00005006538)	ENSCDRG00005006546	ECPAS (ENSCDRG00005006589)	OR2K2 (ENSCDRG00005006951)	LPAR1 (ENSCDRG00005006977) #8	MUSK (ENSCDRG00005007069) #9	SVEP1 (ENSCDRG00005008459) #10	ENSCDRG00005008714	ENSCDRG00005009128 #13	C9orf152 (ENSCDRG00005009216) #14	ENSCDRG00005009265 #16	PTPN3 (ENSCDRG00005009897) #17	EPB41L4B (ENSCDRG00005010219) #19	FRRS1L (ENSCDRG00005010771) #20	TMEM245 (ENSCDRG00005010838) #21	CTNNAL1 (ENSCDRG00005011053) #22	ABITRAM (ENSCDRG00005011244) #23	ELP1 (ENSCDRG00005011319) #24	ACTL7A (ENSCDRG00005011517) #25	ACTL7B (ENSCDRG00005011545) #26	ENSCDRG00005011578	KLF4 (ENSCDRG00005011635) #27	RAD23B (ENSCDRG00005011699) #28	ZNF462 (ENSCDRG00005011818) #29	TMEM38B (ENSCDRG00005011931) #30	TAL2 (ENSCDRG00005012027) #31	FKTN (ENSCDRG00005012053) #32	FSD1L (ENSCDRG00005012193) #33	SLC44A1 (ENSCDRG00005012919) #34	ABCA1 (ENSCDRG00005013099) #35	NIPSNAP3A (ENSCDRG00005013552) #37
Alpaca	MODERN SPECIES	2490													EPB41L4B (ENSVPAG00000007125) #19	FRRS1L (ENSVPAG00000007124) #20	TMEM245 (ENSVPAG00000007123) #21	CTNNAL1 (ENSVPAG00000007121) #22	ENSVPAG00000007120 #23	ELP1 (ENSVPAG00000007116) #24	ACTL7A (ENSVPAG00000007115) #25
Atlantogenata	ANCESTRAL SPECIES	12	ENSGT00940000162615	ENSGT00940000154740.a.a.c.a	ENSGT00940000153612.A	ENSGT01040000240406.A.b.b	ENSGT01050000244941.A #8	ENSGT00940000158226 #9	ENSGT00940000156061 #10	ENSGT00940000162445	ENSGT00940000154259 #13	ENSGT00390000005322 #14	ENSGT00930000151059 #15	ENSGT00940000157888 #17	ENSGT00940000158331 #19	ENSGT00940000159043 #20	ENSGT00390000001667 #21	ENSGT01030000234543.F #22	ENSGT00450000040303 #23	ENSGT00390000013344 #24	ENSGT00940000162158 #25	ENSGT00940000162582 #26	ENSGT00940000156229 #27	ENSGT00390000012078.b #28	ENSGT00940000156411 #29	ENSGT00390000018845.e #30	ENSGT00940000160867 #31	ENSGT00390000014471 #32	ENSGT00940000157979 #33	ENSGT00940000157174 #34	ENSGT00940000154658.b #35	ENSGT00950000183018.b.k.b ##37	ENSGT01040000240406.A.b.a.b
Xenarthra	ANCESTRAL SPECIES	540												ENSGT00940000157888 #17	ENSGT00940000158331 #19	ENSGT00940000159043 #20	ENSGT00390000001667 #21	ENSGT01030000234543.F #22	ENSGT00450000040303 #23	ENSGT00390000013344 #24	ENSGT00940000162158 #25	ENSGT00940000162582 #26
Armadillo	MODERN SPECIES	3556											ENSDNOG00000048619	PTPN3 (ENSDNOG00000011270) #17	EPB41L4B (ENSDNOG00000016315) #19	FRRS1L (ENSDNOG00000013702) #20	ENSDNOG00000040850 #21	CTNNAL1 (ENSDNOG00000013645) #22	ABITRAM (ENSDNOG00000006722) #23	ELP1 (ENSDNOG00000017396) #24	ENSDNOG00000043531	ENSDNOG00000036182	ACTL7A (ENSDNOG00000041548) #25	ACTL7B (ENSDNOG00000032343) #26	ENSDNOG00000047503
Sloth	MODERN SPECIES	1740																CTNNAL1 (ENSCHOG00000001871) #22	ABITRAM (ENSCHOG00000001869) #23
Afrotheria	ANCESTRAL SPECIES		ENSGT00940000162615	ENSGT00940000154740.a.a.c.a	ENSGT00940000153612.A	ENSGT01040000240406.A.b.b	ENSGT01050000244941.A #8	ENSGT00940000158226 #9	ENSGT00940000156061 #10	ENSGT00940000162445	ENSGT00940000154259 #13	ENSGT00390000005322 #14	ENSGT00930000151059 #15	ENSGT00940000157888 #17	ENSGT00940000158331 #19	ENSGT00940000159043 #20	ENSGT00390000001667 #21	ENSGT01030000234543.F #22	ENSGT00450000040303 #23	ENSGT00390000013344 #24	ENSGT00940000162158 #25	ENSGT00940000162582 #26	ENSGT00940000156229 #27	ENSGT00390000012078.b #28	ENSGT00940000156411 #29	ENSGT00390000018845.e #30	ENSGT00940000160867 #31	ENSGT00390000014471 #32	ENSGT00940000157979 #33	ENSGT00940000157174 #34	ENSGT00940000154658.b #35	ENSGT00950000183018.b.k.b ##37	ENSGT01040000240406.A.b.a.b
Tenrec	MODERN SPECIES	4299																CTNNAL1 (ENSETEG00000011642) #22	ABITRAM (ENSETEG00000011641) #23	ELP1 (ENSETEG00000011634) #24
Afrotheria_a	ANCESTRAL SPECIES		ENSGT00940000162615	ENSGT00940000154740.a.a.c.a	ENSGT00940000153612.A	ENSGT01040000240406.A.b.b	ENSGT01050000244941.A #8	ENSGT00940000158226 #9	ENSGT00940000156061 #10	ENSGT00940000162445	ENSGT00940000154259 #13	ENSGT00390000005322 #14	ENSGT00930000151059 #15	ENSGT00940000157888 #17	ENSGT00940000158331 #19	ENSGT00940000159043 #20	ENSGT00390000001667 #21	ENSGT01030000234543.F #22	ENSGT00450000040303 #23	ENSGT00390000013344 #24	ENSGT00940000162158 #25	ENSGT00940000162582 #26	ENSGT00940000156229 #27	ENSGT00390000012078.b #28	ENSGT00940000156411 #29	ENSGT00390000018845.e #30	ENSGT00940000160867 #31	ENSGT00390000014471 #32	ENSGT00940000157979 #33	ENSGT00940000157174 #34	ENSGT00940000154658.b #35	ENSGT00950000183018.b.k.b ##37	ENSGT01040000240406.A.b.a.b
Elephant	MODERN SPECIES	472	PTGR1 (ENSLAFG00000014157)	ENSLAFG00000014150	ECPAS (ENSLAFG00000028895)	OR2K2 (ENSLAFG00000012372)	LPAR1 (ENSLAFG00000012624) #8	MUSK (ENSLAFG00000015335) #9	SVEP1 (ENSLAFG00000015893) #10	ENSLAFG00000028348	TXN (ENSLAFG00000012856) #13	C9orf152 (ENSLAFG00000023199) #14	PALM2AKAP2 (ENSLAFG00000003658) #15	PTPN3 (ENSLAFG00000001914) #17	EPB41L4B (ENSLAFG00000006820) #19	FRRS1L (ENSLAFG00000006816) #20	TMEM245 (ENSLAFG00000006807) #21	CTNNAL1 (ENSLAFG00000006798) #22	ABITRAM (ENSLAFG00000006796) #23	ELP1 (ENSLAFG00000000736) #24	ACTL7A (ENSLAFG00000000735) #25	ACTL7B (ENSLAFG00000008993) #26	KLF4 (ENSLAFG00000000421) #27	RAD23B (ENSLAFG00000007533) #28	ZNF462 (ENSLAFG00000012314) #29	ENSLAFG00000031851	TMEM38B (ENSLAFG00000032575) #30	ENSLAFG00000025752	TAL2 (ENSLAFG00000008309) #31	FKTN (ENSLAFG00000021811) #32	FSD1L (ENSLAFG00000007639) #33	SLC44A1 (ENSLAFG00000000191) #34	ABCA1 (ENSLAFG00000015516) #35
Hyrax	MODERN SPECIES	5487																CTNNAL1 (ENSPCAG00000004521) #22	ABITRAM (ENSPCAG00000004485) #23	ELP1 (ENSPCAG00000004316) #24
Marsupialia	ANCESTRAL SPECIES	6	ENSGT01040000240406.A.b.a.a.a.a.b.a	ENSGT01040000240406.A.b.a.a.a.b.b	ENSGT01040000240406.A.b.a.b.a.a.a.a.a	ENSGT01040000240406.A.a	ENSGT01040000240406.A.b.a.a.b.i.a.a.b	ENSGT01040000240406.A.b.a.a.b.i.b	ENSGT01040000240406.A.b.a.a.a.a.a.b	ENSGT01040000240406.A.b.a.a.a.a.a.a.b.b	ENSGT01040000240406.A.b.a.a.a.a.a.a.b.a	ENSGT01040000240406.A.b.a.a.a.a.a.a.a.a.b	ENSGT00940000159937	ENSGT00940000155598	ENSGT00940000161010	ENSGT00940000159043 #20	ENSGT00390000001667 #21	ENSGT01030000234543.F #22	ENSGT00450000040303 #23	ENSGT00390000013344 #24	ENSGT00940000162158 #25	ENSGT00940000162582 #26	ENSGT00390000007901	ENSGT00950000182992.a.a	ENSGT00940000157688	ENSGT00930000151031	ENSGT01000000214440.A.b	ENSGT00950000183038.a.b.b.a	ENSGT00390000003561	ENSGT00550000075033	ENSGT00940000156394	ENSGT00940000158302.e	ENSGT00940000157173
Marsupialia_b	ANCESTRAL SPECIES	11	ENSGT01040000240406.A.b.a.a.b.j	ENSGT01040000240406.A.b.a.a.a.a.b.a	ENSGT01040000240406.A.b.a.a.a.b.b	ENSGT01040000240406.A.b.a.b.a.a.a.a.a	ENSGT01040000240406.A.b.a.b.b	ENSGT01040000240406.A.b.a.a.b.i.a.a.b	ENSGT01040000240406.A.b.a.a.a.a.a.b	ENSGT01040000240406.A.b.a.a.a.a.a.a.b.b	ENSGT01040000240406.A.b.a.a.a.a.a.a.b.a	ENSGT01040000240406.A.b.a.a.a.a.a.a.a.a.b	ENSGT00940000159937	ENSGT00940000155598	ENSGT00940000161010	ENSGT00940000159043 #20	ENSGT00390000001667 #21	ENSGT01030000234543.F #22	ENSGT00450000040303 #23	ENSGT00390000013344 #24	ENSGT00940000162158 #25	ENSGT00940000162582 #26	ENSGT00390000007901	ENSGT00950000182992.a.a	ENSGT00940000157688	ENSGT00930000151031	ENSGT01000000214440.A.b	ENSGT00950000183038.a.b.b.a	ENSGT00390000003561	ENSGT00550000075033	ENSGT00940000156394	ENSGT00940000158302.e	ENSGT00940000157173
Diprotodontia	ANCESTRAL SPECIES	21							ENSGT01040000240406.A.b.a.b.b	ENSGT01040000240406.A.b.a.a.b.i.a.a.b	ENSGT01040000240406.A.b.a.a.a.a.a.b	ENSGT01040000240406.A.b.a.a.a.a.a.a.a.a.b	ENSGT00940000159937	ENSGT00940000155598	ENSGT00940000161010	ENSGT00940000159043 #20	ENSGT00390000001667 #21	ENSGT01030000234543.F #22	ENSGT00450000040303 #23	ENSGT00390000013344 #24	ENSGT00940000162158 #25	ENSGT00940000162582 #26	ENSGT00390000007901	ENSGT00950000182992.a.a	ENSGT00940000157688	ENSGT00930000151031	ENSGT01000000214440.A.b	ENSGT00950000183038.a.b.b.a	ENSGT00390000003561	ENSGT00550000075033	ENSGT00940000156394	ENSGT00940000158302.e	ENSGT00940000157173
Diprotodontia_a	ANCESTRAL SPECIES	17	ENSGT00940000157174 #34	ENSGT00940000154658.b #35	ENSGT00950000183018.b #37	ENSGT01040000240406.A.b.a.a.a.a.b.b	ENSGT01040000240406.A.b.a.a.a.b.a.b	ENSGT01040000240406.A.b.a.b.a.a.a.a.a	ENSGT01040000240406.A.b.a.b.b	ENSGT01040000240406.A.b.a.a.b.i.a.a.b	ENSGT01040000240406.A.b.a.a.a.a.a.b	ENSGT01040000240406.A.b.a.a.a.a.a.a.a.a.b	ENSGT00940000159937	ENSGT00940000155598	ENSGT00940000161010	ENSGT00940000159043 #20	ENSGT00390000001667 #21	ENSGT01030000234543.F #22	ENSGT00450000040303 #23	ENSGT00390000013344 #24	ENSGT00940000162158 #25	ENSGT00940000162582 #26	ENSGT00390000007901	ENSGT00950000182992.a.a	ENSGT00940000157688	ENSGT00930000151031	ENSGT01000000214440.A.b	ENSGT00950000183038.a.b.b.a	ENSGT00390000003561	ENSGT00550000075033	ENSGT00940000156394	ENSGT00940000158302.e	ENSGT00940000157173
Common wonbat	DUPLICATION
Common wonbat	MODERN SPECIES	1066										ENSVURG00010017252	ENSVURG00010017217	ENSVURG00010017177	ENSVURG00010017158	ENSVURG00010017150 #20	ENSVURG00010016925 #21	ENSVURG00010016892 #22	ENSVURG00010016885 #23	ENSVURG00010016835 #24	ENSVURG00010016814 #25	ENSVURG00010016808 #26	ENSVURG00010016793	ENSVURG00010016780	ENSVURG00010016764	ENSVURG00010016751	ENSVURG00010016739	ENSVURG00010016728	ENSVURG00010016712	ENSVURG00010016707	ENSVURG00010016697	ENSVURG00010016686	ENSVURG00010016646
Common wonbat	MODERN SPECIES	1066	PTBP3 (ENSVURG00010005730)	SUSD1 (ENSVURG00010005628)	UGCG (ENSVURG00010005532)	ENSVURG00010005496	DNAJC25 (ENSVURG00010005487)	ECPAS (ENSVURG00010005378)	ABCC6 (ENSVURG00010003622)	ENSVURG00010003249	XYLT1 (ENSVURG00010003026)	ENSVURG00010002878	ENSVURG00010002850	ENSVURG00010002822	ENSVURG00010002803	ENSVURG00010002785 #20	ENSVURG00010002287 #21	ENSVURG00010002216 #22	ENSVURG00010002194 #23	ENSVURG00010002149 #24	ENSVURG00010002131 #25	ENSVURG00010002120 #26	ENSVURG00010002042	ENSVURG00010002016	ENSVURG00010001967	ENSVURG00010001910	ENSVURG00010001888	ENSVURG00010001827	ENSVURG00010001782	ENSVURG00010001761	ENSVURG00010001751	ENSVURG00010001697	ENSVURG00010001572
koala	MODERN SPECIES	59	ENSPCIG00000032835	ENSPCIG00000031318	ENSPCIG00000036317	ENSPCIG00000035051	ENSPCIG00000037469	ENSPCIG00000014112	ENSPCIG00000026694	ENSPCIG00000026685	ENSPCIG00000026687	ENSPCIG00000037263	ENSPCIG00000030853	CORO2A (ENSPCIG00000028004)	TRIM14 (ENSPCIG00000028007)	FRRS1L (ENSPCIG00000028010) #20	TMEM245 (ENSPCIG00000018923) #21	CTNNAL1 (ENSPCIG00000019042) #22	ABITRAM (ENSPCIG00000037040) #23	ELP1 (ENSPCIG00000013392) #24	ACTL7A (ENSPCIG00000013409) #25	ACTL7B (ENSPCIG00000026064) #26	MSANTD3 (ENSPCIG00000026065)	TEX10 (ENSPCIG00000026066)	INVS (ENSPCIG00000026067)	ERP44 (ENSPCIG00000026488)	ENSPCIG00000026489	NR4A3 (ENSPCIG00000025397)	ENSPCIG00000014397	SEC61B (ENSPCIG00000000880)	ALG2 (ENSPCIG00000000867)	TGFBR1 (ENSPCIG00000000853)	ENSPCIG00000000782
Wallaby	MODERN SPECIES	2784																CTNNAL1 (ENSMEUG00000013646) #22	ENSMEUG00000013637 #23
Tasmanian devil	MODERN SPECIES		ENSSHAG00000005301	ENSSHAG00000005515	ENSSHAG00000025813	ENSSHAG00000027976	ENSSHAG00000031342	ENSSHAG00000001047	ENSSHAG00000026091	ENSSHAG00000001673	ENSSHAG00000000019	ENSSHAG00000001168	ENSSHAG00000021544	ENSSHAG00000001339	ENSSHAG00000005409	ENSSHAG00000030177 #20	TMEM245 (ENSSHAG00000006624) #21	CTNNAL1 (ENSSHAG00000008270) #22	ABITRAM (ENSSHAG00000008834) #23	ELP1 (ENSSHAG00000008964) #24	ENSSHAG00000009471 #25	ENSSHAG00000009535 #26	ENSSHAG00000030809	TEX10 (ENSSHAG00000010223)	INVS (ENSSHAG00000025620)	ERP44 (ENSSHAG00000012181)	STX17 (ENSSHAG00000030239)	NR4A3 (ENSSHAG00000013487)	SEC61B (ENSSHAG00000023694)	ALG2 (ENSSHAG00000021066)	TGFBR1 (ENSSHAG00000016699)	COL15A1 (ENSSHAG00000016845)	ENSSHAG00000017474
Opossum	MODERN SPECIES	5	ENSMODG00000047517	ENSMODG00000049121	ENSMODG00000038542	ENSMODG00000012442	ENSMODG00000024661	ENSMODG00000012447	ENSMODG00000044228	ENSMODG00000012496	ENSMODG00000012510	ENSMODG00000024660	TBC1D2 (ENSMODG00000012530)	CORO2A (ENSMODG00000012537)	TRIM14 (ENSMODG00000012543)	FRRS1L (ENSMODG00000012547) #20	TMEM245 (ENSMODG00000012553) #21	CTNNAL1 (ENSMODG00000012562) #22	ENSMODG00000012563 #23	ELP1 (ENSMODG00000012603) #24	ACTL7A (ENSMODG00000024654) #25	ACTL7B (ENSMODG00000024653) #26	ENSMODG00000042481	MSANTD3 (ENSMODG00000044497)	TEX10 (ENSMODG00000012618)	INVS (ENSMODG00000012633)	ERP44 (ENSMODG00000012640)	STX17 (ENSMODG00000012645)	NR4A3 (ENSMODG00000012660)	ENSMODG00000027487	ENSMODG00000044791	SEC61B (ENSMODG00000012664)	ALG2 (ENSMODG00000040576)
Sauria	ANCESTRAL SPECIES	92												ENSGT00940000157664	ENSGT00940000157173	ENSGT00940000155783	ENSGT00390000000916	ENSGT01030000234543.F #22	ENSGT00450000040303 #23	ENSGT00940000156387	ENSGT00940000160714	ENSGT00950000182910.a.b	ENSGT00940000164265.C
Archelosauria	ANCESTRAL SPECIES	6	ENSGT00940000157657	ENSGT00940000154896	ENSGT00940000158906	ENSGT00390000018531	ENSGT00530000063461.A	ENSGT01030000234574.A.a	ENSGT00390000010866	ENSGT00390000015775	ENSGT00940000158596	ENSGT00940000161198	ENSGT00940000160429	ENSGT00940000157664	ENSGT00940000157173	ENSGT00940000155783	ENSGT00390000000916	ENSGT01030000234543.F #22	ENSGT00450000040303 #23	ENSGT00940000156387	ENSGT00940000160714	ENSGT00950000182910.a.b	ENSGT00940000164265.C	ENSGT01030000234613.a.a	ENSGT00960000188468	ENSGT00940000160982	ENSGT01030000234977	ENSGT00940000154486.a.b	ENSGT00390000007901	ENSGT00530000068739	ENSGT00950000182992.a.a	ENSGT00940000157688	ENSGT00930000151031
Cryptodira	ANCESTRAL SPECIES	46	ENSGT00940000157657	ENSGT00940000154896	ENSGT00940000158906	ENSGT00390000018531	ENSGT00530000063461.A	ENSGT01030000234574.A.a	ENSGT00390000010866	ENSGT00390000015775	ENSGT00940000158596	ENSGT00940000161198	ENSGT00940000160429	ENSGT00940000157664	ENSGT00940000157173	ENSGT00940000155783	ENSGT00390000000916	ENSGT01030000234543.F #22	ENSGT00450000040303 #23	ENSGT00940000156387	ENSGT00940000160714	ENSGT00950000182910.a.b	ENSGT00940000164265.C	ENSGT01030000234613.a.a	ENSGT00940000158616	ENSGT00530000063884.a	ENSGT00940000153875.c	ENSGT00940000161608	ENSGT00950000183170.b.a	ENSGT00390000017432	ENSGT00940000158302.e	ENSGT00940000156394	ENSGT00390000018540
Testudinoidea	ANCESTRAL SPECIES	8	ENSGT00940000156325	ENSGT00940000154896	ENSGT00940000158906	ENSGT00390000018531	ENSGT00530000063461.A	ENSGT01030000234574.A.a	ENSGT00390000010866	ENSGT00390000015775	ENSGT00940000158596	ENSGT00940000161198	ENSGT00940000160429	ENSGT00940000157664	ENSGT00940000157173	ENSGT00940000155783	ENSGT00390000000916	ENSGT01030000234543.F #22	ENSGT00450000040303 #23	ENSGT00940000156387	ENSGT00940000160714	ENSGT00950000182910.a.b	ENSGT00940000164265.C	ENSGT01030000234613.a.a.e	ENSGT00940000160982	ENSGT01030000234977	ENSGT00940000154486.a.b	ENSGT00390000007901	ENSGT00530000068739	ENSGT00950000182992.a.a	ENSGT00940000157688	ENSGT00930000151031	ENSGT01000000214440.A.b
Testudinidae	ANCESTRAL SPECIES	1	ENSGT00940000156325	ENSGT00940000154896	ENSGT00940000158906	ENSGT00390000018531	ENSGT00530000063461.A	ENSGT01030000234574.A.a	ENSGT00390000010866	ENSGT00390000015775	ENSGT00940000158596	ENSGT00940000161198	ENSGT00940000160429	ENSGT00940000157664	ENSGT00940000157173	ENSGT00940000155783	ENSGT00390000000916	ENSGT01030000234543.F #22	ENSGT00450000040303 #23	ENSGT00940000156387	ENSGT00940000160714	ENSGT00950000182910.a.b	ENSGT00940000164265.C	ENSGT01030000234613.a.a.e	ENSGT00940000160982	ENSGT01030000234977	ENSGT00940000154486.a.b	ENSGT00390000007901	ENSGT00530000068739	ENSGT00950000182992.a.a	ENSGT00940000157688	ENSGT00930000151031	ENSGT01000000214440.A.b
Goode s thornscrub tortoise	MODERN SPECIES	11	SLC6A19 (ENSGEVG00005002227)	SLC6A18 (ENSGEVG00005002163)	TERT (ENSGEVG00005002124)	CLPTM1L (ENSGEVG00005002056)	LPCAT1 (ENSGEVG00005002021)	MRPL36 (ENSGEVG00005002011)	NDUFS6 (ENSGEVG00005002002)	IRX4 (ENSGEVG00005001991)	IRX2 (ENSGEVG00005001979)	IRX1 (ENSGEVG00005001973)	ANKS6 (ENSGEVG00005001910)	GALNT12 (ENSGEVG00005001835)	GABBR2 (ENSGEVG00005001782)	ELP2 (ENSGEVG00005001729)	ENSGEVG00005001694	CTNNAL1 (ENSGEVG00005001665) #22	ABITRAM (ENSGEVG00005001645) #23	SLC39A6 (ENSGEVG00005001621)	TMEFF1 (ENSGEVG00005001596)	CAVIN4 (ENSGEVG00005001574)	ENSGEVG00005001492	EXOC3 (ENSGEVG00005001436)	PDCD6 (ENSGEVG00005001415)	ENSGEVG00005001384	ENSGEVG00005001364	ENSGEVG00005001347	MSANTD3 (ENSGEVG00005001340)	ENSGEVG00005001292	TEX10 (ENSGEVG00005001259)	INVS (ENSGEVG00005001220)	ERP44 (ENSGEVG00005001181)
Abingdon island giant tortoise	MODERN SPECIES	391												ENSCABG00000006060	GABBR2 (ENSCABG00000006061)	ELP2 (ENSCABG00000006063)	ENSCABG00000006065	CTNNAL1 (ENSCABG00000006070) #22	ABITRAM (ENSCABG00000006179) #23	SLC39A6 (ENSCABG00000006180)	TMEFF1 (ENSCABG00000006196)	CAVIN4 (ENSCABG00000006199)	ENSCABG00000006206	ENSCABG00000006208
Emydidae	ANCESTRAL SPECIES	58	ENSGT00940000157657	ENSGT00940000154896	ENSGT00940000158906	ENSGT00390000018531	ENSGT00530000063461.A	ENSGT01030000234574.A.a	ENSGT00390000010866	ENSGT00390000015775	ENSGT00940000158596	ENSGT00940000161198	ENSGT00940000160429	ENSGT00940000157664	ENSGT00940000157173	ENSGT00940000155783	ENSGT00390000000916	ENSGT01030000234543.F #22	ENSGT00450000040303 #23	ENSGT00940000156387	ENSGT00940000160714	ENSGT00950000182910.a.b	ENSGT00940000164265.C	ENSGT01030000234613.a.a.e	ENSGT00940000160982	ENSGT01030000234977	ENSGT00940000154486.a.b	ENSGT00390000007901	ENSGT00530000068739
painted turtle	MODERN SPECIES	718										INO80C (ENSCPBG00000003222)	GALNT1 (ENSCPBG00000003192)	C18orf21 (ENSCPBG00000003154)	RPRD1A (ENSCPBG00000003126)	FHOD3 (ENSCPBG00000002983)	ENSCPBG00000002931	CTNNAL1 (ENSCPBG00000002865) #22	ABITRAM (ENSCPBG00000002839) #23	SLC39A6 (ENSCPBG00000002831)	TMEFF1 (ENSCPBG00000002816)	CAVIN4 (ENSCPBG00000002800)	ENSCPBG00000001941	EXOC3 (ENSCPBG00000001725)	PDCD6 (ENSCPBG00000001714)	ENSCPBG00000001692	AHRR (ENSCPBG00000001668)	MSANTD3 (ENSCPBG00000001654)	ENSCPBG00000001630	TRIP13 (ENSCPBG00000001609)	BRD9 (ENSCPBG00000001460)	ENSCPBG00000001409	TPPP (ENSCPBG00000001388)
Three-toed box turtle	MODERN SPECIES	297	SLC6A19 (ENSTMTG00000008610)	SLC6A18 (ENSTMTG00000008435)	TERT (ENSTMTG00000008335)	CLPTM1L (ENSTMTG00000008296)	LPCAT1 (ENSTMTG00000008129)	MRPL36 (ENSTMTG00000008109)	NDUFS6 (ENSTMTG00000008090)	IRX4 (ENSTMTG00000008074)	IRX2 (ENSTMTG00000008066)	IRX1 (ENSTMTG00000008055)	ANKS6 (ENSTMTG00000008027)	GALNT12 (ENSTMTG00000008007)	ENSTMTG00000007997	GABBR2 (ENSTMTG00000007941)	ELP2 (ENSTMTG00000007883)	CTNNAL1 (ENSTMTG00000007394) #22	ABITRAM (ENSTMTG00000007325) #23	ENSTMTG00000007307	TMEFF1 (ENSTMTG00000007279)	CAVIN4 (ENSTMTG00000007267)	ENSTMTG00000007098	ENSTMTG00000007047	PDCD6 (ENSTMTG00000007032)	ENSTMTG00000007005	ENSTMTG00000006975	ENSTMTG00000006964	MSANTD3 (ENSTMTG00000006954)	ENSTMTG00000006916
Chinese turtle	MODERN SPECIES	845														GABBR2 (ENSPSIG00000008629)	ELP2 (ENSPSIG00000009430)	CTNNAL1 (ENSPSIG00000009870) #22	ABITRAM (ENSPSIG00000008424) #23	SLC39A6 (ENSPSIG00000008571)	ENSPSIG00000001946
Archosauria	ANCESTRAL SPECIES		ENSGT00940000154896	ENSGT00940000158906	ENSGT00390000018531	ENSGT00530000063461.A	ENSGT01030000234574.A.a	ENSGT00390000010866	ENSGT00390000015775	ENSGT00940000158596	ENSGT00940000161198	ENSGT00940000154136.k.b	ENSGT00940000160429	ENSGT00940000157664	ENSGT00940000157173	ENSGT00940000155783	ENSGT00390000000916	ENSGT01030000234543.F #22	ENSGT00450000040303 #23	ENSGT00940000156387	ENSGT00940000160714	ENSGT00950000182910.a.b	ENSGT00940000164265.C	ENSGT01030000234613.a.a	ENSGT00960000188468	ENSGT00940000160982	ENSGT01030000234977	ENSGT00940000154486.a.b	ENSGT00390000007901	ENSGT00530000068739	ENSGT00950000182992.a.a	ENSGT00940000157688	ENSGT00930000151031
Australian saltwater crocodile	MODERN SPECIES		SLC6A18 (ENSCPRG00005014172)	TERT (ENSCPRG00005014163)	CLPTM1L (ENSCPRG00005014157)	LPCAT1 (ENSCPRG00005014149)	ENSCPRG00005014130	MRPL36 (ENSCPRG00005014128)	NDUFS6 (ENSCPRG00005014126)	IRX4 (ENSCPRG00005014121)	IRX2 (ENSCPRG00005014100)	ENSCPRG00005014091	IRX1 (ENSCPRG00005014090)	ANKS6 (ENSCPRG00005014063)	GALNT12 (ENSCPRG00005014054)	GABBR2 (ENSCPRG00005014003)	ELP2 (ENSCPRG00005013943)	CTNNAL1 (ENSCPRG00005013933) #22	ABITRAM (ENSCPRG00005013924) #23	SLC39A6 (ENSCPRG00005013917)	TMEFF1 (ENSCPRG00005013909)	CAVIN4 (ENSCPRG00005013897)	ENSCPRG00005013852	EXOC3 (ENSCPRG00005013824)	PDCD6 (ENSCPRG00005013819)	ENSCPRG00005013812	ENSCPRG00005013811	MSANTD3 (ENSCPRG00005013789)	TEX10 (ENSCPRG00005013615)	INVS (ENSCPRG00005013524)	ERP44 (ENSCPRG00005013492)	STX17 (ENSCPRG00005013486)	NR4A3 (ENSCPRG00005013476)
Aves	ANCESTRAL SPECIES	24	ENSGT00390000008818	ENSGT00940000154896	ENSGT00940000158906	ENSGT00390000018531	ENSGT00530000063461.A	ENSGT01030000234574.A.a	ENSGT00390000010866	ENSGT00390000015775	ENSGT00940000158596	ENSGT00940000161198	ENSGT00940000160429	ENSGT00940000157664	ENSGT00940000157173	ENSGT00940000155783	ENSGT00390000000916	ENSGT01030000234543.F #22	ENSGT00450000040303 #23	ENSGT00940000156387	ENSGT00940000160714	ENSGT00950000182910.a.b	ENSGT00940000164265.C	ENSGT01030000234613.a.a	ENSGT00960000188468	ENSGT00940000160982	ENSGT01030000234977	ENSGT00940000154486.a.b	ENSGT00390000007901	ENSGT00530000068739	ENSGT00950000182992.a.a	ENSGT00940000157688	ENSGT00930000151031
African ostrich	MODERN SPECIES	872															ELP2 (ENSSCUG00000015169)	CTNNAL1 (ENSSCUG00000015156) #22	ABITRAM (ENSSCUG00000015154) #23	SLC39A6 (ENSSCUG00000015151)	TMEFF1 (ENSSCUG00000015145)	CAVIN4 (ENSSCUG00000015143)	ENSSCUG00000015021	EXOC3 (ENSSCUG00000014947)	PDCD6 (ENSSCUG00000014944)	AHRR (ENSSCUG00000014931)	MSANTD3 (ENSSCUG00000014925)
Neognathae	ANCESTRAL SPECIES		ENSGT00390000008818	ENSGT00940000154896	ENSGT00940000158906	ENSGT00390000018531	ENSGT00530000063461.A	ENSGT01030000234574.A.a	ENSGT00390000010866	ENSGT00390000015775	ENSGT00940000158596	ENSGT00940000161198	ENSGT00940000160429	ENSGT00940000157664	ENSGT00940000157173	ENSGT00940000155783	ENSGT00390000000916	ENSGT01030000234543.F #22	ENSGT00450000040303 #23	ENSGT00940000156387	ENSGT00940000160714	ENSGT00950000182910.a.b	ENSGT00940000164265.C	ENSGT01030000234613.a.a	ENSGT00960000188468	ENSGT00940000160982	ENSGT01030000234977	ENSGT00940000154486.a.b	ENSGT00390000007901	ENSGT00530000068739	ENSGT00950000182992.a.a	ENSGT00940000157688	ENSGT00930000151031
Neognathae_b	ANCESTRAL SPECIES	3	ENSGT00390000008818	ENSGT00940000154896	ENSGT00940000158906	ENSGT00390000018531	ENSGT00530000063461.A	ENSGT01030000234574.A.a	ENSGT00390000010866	ENSGT00390000015775	ENSGT00940000158596	ENSGT00940000161198	ENSGT00940000160429	ENSGT00940000157664	ENSGT00940000157173	ENSGT00940000155783	ENSGT00390000000916	ENSGT01030000234543.F #22	ENSGT00450000040303 #23	ENSGT00940000156387	ENSGT00940000160714	ENSGT00950000182910.a.b	ENSGT00940000164265.C	ENSGT01030000234613.a.a	ENSGT00940000160982	ENSGT01030000234977	ENSGT00940000154486.a.b	ENSGT00390000007901	ENSGT00530000068739	ENSGT00950000182992.a.a	ENSGT00940000157688	ENSGT00930000151031	ENSGT01000000214440.A.b
Neognathae_c	ANCESTRAL SPECIES	1	ENSGT00390000008818	ENSGT00940000154896	ENSGT00940000158906.a	ENSGT00390000018531	ENSGT00530000063461.A	ENSGT01030000234574.A.a	ENSGT00390000010866	ENSGT00390000015775	ENSGT00940000158596	ENSGT00940000161198	ENSGT00940000160429	ENSGT00940000157664	ENSGT00940000157173	ENSGT00940000155783	ENSGT00390000000916	ENSGT01030000234543.F #22	ENSGT00450000040303 #23	ENSGT00940000156387	ENSGT00940000160714	ENSGT00950000182910.a.b	ENSGT00940000164265.C	ENSGT01030000234613.a.a	ENSGT00940000160982	ENSGT01030000234977	ENSGT00940000154486.a.b	ENSGT00390000007901	ENSGT00530000068739	ENSGT00950000182992.a.a	ENSGT00940000157688	ENSGT00930000151031	ENSGT01000000214440.A.b
Golden eagle	MODERN SPECIES	20	CCDC127 (ENSACCG00020002460)	SLC6A19 (ENSACCG00020002448)	SLC6A18 (ENSACCG00020002420)	TERT (ENSACCG00020002389)	CLPTM1L (ENSACCG00020002343)	LPCAT1 (ENSACCG00020002316)	MRPL36 (ENSACCG00020002294)	NDUFS6 (ENSACCG00020002276)	IRX4 (ENSACCG00020002253)	IRX2 (ENSACCG00020002240)	IRX1 (ENSACCG00020002227)	ANKS6 (ENSACCG00020002206)	GALNT12 (ENSACCG00020002189)	GABBR2 (ENSACCG00020002159)	ELP2 (ENSACCG00020002077)	CTNNAL1 (ENSACCG00020001909) #22	ABITRAM (ENSACCG00020001871) #23	SLC39A6 (ENSACCG00020001853)	TMEFF1 (ENSACCG00020001829)	CAVIN4 (ENSACCG00020001810)	ENSACCG00020001721	EXOC3 (ENSACCG00020001660)	PDCD6 (ENSACCG00020001652)	ENSACCG00020001606	AHRR (ENSACCG00020001585)	MSANTD3 (ENSACCG00020001575)	ENSACCG00020001540	TEX10 (ENSACCG00020001504)	INVS (ENSACCG00020001453)	ERP44 (ENSACCG00020001405)	STX17 (ENSACCG00020001389)
Kakapo	MODERN SPECIES		SLC6A19 (ENSSHBG00005004758)	ENSSHBG00005004751	ENSSHBG00005004747	TERT (ENSSHBG00005004728)	CLPTM1L (ENSSHBG00005004718)	LPCAT1 (ENSSHBG00005004713)	MRPL36 (ENSSHBG00005004708)	NDUFS6 (ENSSHBG00005004706)	IRX4 (ENSSHBG00005004696)	IRX2 (ENSSHBG00005004691)	IRX1 (ENSSHBG00005004687)	ANKS6 (ENSSHBG00005004676)	GALNT12 (ENSSHBG00005004664)	GABBR2 (ENSSHBG00005004651)	ELP2 (ENSSHBG00005004608)	CTNNAL1 (ENSSHBG00005004549) #22	ABITRAM (ENSSHBG00005004522) #23	SLC39A6 (ENSSHBG00005004518)	TMEFF1 (ENSSHBG00005004514)	EXOC3 (ENSSHBG00005004507)	ENSSHBG00005004380	PDCD6 (ENSSHBG00005004308)	ENSSHBG00005004302	AHRR (ENSSHBG00005004297)	ENSSHBG00005004288	ENSSHBG00005004283	MSANTD3 (ENSSHBG00005004280)	ENSSHBG00005004270	TEX10 (ENSSHBG00005004257)	INVS (ENSSHBG00005004242)	ERP44 (ENSSHBG00005004230)
Passeriformes	ANCESTRAL SPECIES		ENSGT00390000008818	ENSGT00940000154896	ENSGT00940000158906	ENSGT00390000018531	ENSGT00530000063461.A	ENSGT01030000234574.A.a	ENSGT00390000010866	ENSGT00390000015775	ENSGT00940000158596	ENSGT00940000161198	ENSGT00940000160429	ENSGT00940000157664	ENSGT00940000157173	ENSGT00940000155783	ENSGT00390000000916	ENSGT01030000234543.F #22	ENSGT00450000040303 #23	ENSGT00940000156387	ENSGT00940000160714	ENSGT00950000182910.a.b	ENSGT00940000164265.C	ENSGT01030000234613.a.a	ENSGT00940000160982	ENSGT01030000234977	ENSGT00940000154486.a.b	ENSGT00390000007901	ENSGT00530000068739	ENSGT00950000182992.a.a	ENSGT00940000157688	ENSGT00930000151031	ENSGT01000000214440.A.b
Passeriformes_d	ANCESTRAL SPECIES		ENSGT00390000008818	ENSGT00940000154896	ENSGT00940000158906	ENSGT00390000018531	ENSGT00530000063461.A	ENSGT01030000234574.A.a	ENSGT00940000173658	ENSGT00390000015775	ENSGT00940000158596	ENSGT00940000161198	ENSGT00940000160429	ENSGT00940000157664	ENSGT00940000157173	ENSGT00940000155783	ENSGT00390000000916	ENSGT01030000234543.F #22	ENSGT00450000040303 #23	ENSGT00940000156387	ENSGT00940000160714	ENSGT00950000182910.a.b	ENSGT00940000164265.C	ENSGT01030000234613.a.a	ENSGT00940000160982	ENSGT01030000234977	ENSGT00940000154486.a.b	ENSGT00390000007901	ENSGT00530000068739	ENSGT00950000182992.a.a	ENSGT00940000157688	ENSGT00930000151031	ENSGT01000000214440.A.b
Passeriformes_g	ANCESTRAL SPECIES	3	ENSGT00390000008818	ENSGT00940000154896	ENSGT00940000158906	ENSGT00390000018531	ENSGT00530000063461.A	ENSGT01030000234574.A.a	ENSGT00940000173658	ENSGT00390000015775	ENSGT00940000158596	ENSGT00940000161198	ENSGT00940000160429	ENSGT00940000157664	ENSGT00940000157173	ENSGT00940000155783	ENSGT00390000000916	ENSGT01030000234543.F #22	ENSGT00450000040303 #23	ENSGT00940000156387	ENSGT00940000160714	ENSGT00950000182910.a.b	ENSGT00940000164265.C	ENSGT01030000234613.a.a	ENSGT00940000160982	ENSGT01030000234977	ENSGT00940000154486.a.b	ENSGT00390000007901	ENSGT00530000068739	ENSGT00950000182992.a.a	ENSGT00940000157688	ENSGT00930000151031	ENSGT01000000214440.A.b
Passeroidea	ANCESTRAL SPECIES	2	ENSGT00390000008818	ENSGT00940000154896	ENSGT00940000158906	ENSGT00390000018531	ENSGT00530000063461.A	ENSGT01030000234574.A.a	ENSGT00940000173658	ENSGT00390000015775	ENSGT00940000158596	ENSGT00940000161198	ENSGT00940000160429	ENSGT00940000157664	ENSGT00940000157173	ENSGT00940000155783	ENSGT00390000000916	ENSGT01030000234543.F #22	ENSGT00450000040303 #23	ENSGT00940000156387	ENSGT00940000160714	ENSGT00950000182910.a.b	ENSGT00940000164265.C	ENSGT01030000234613.a.a	ENSGT00940000160982	ENSGT01030000234977	ENSGT00940000154486.a.b	ENSGT00390000007901	ENSGT00530000068739	ENSGT00950000182992.a.a	ENSGT00940000157688	ENSGT00930000151031	ENSGT01000000214440.A.b
Zebra finch	MODERN SPECIES	12	SLC6A19 (ENSTGUG00000008297)	ENSTGUG00000019604	SLC6A18 (ENSTGUG00000008357)	TERT (ENSTGUG00000008383)	CLPTM1L (ENSTGUG00000008431)	LPCAT1 (ENSTGUG00000008465)	ENSTGUG00000029505	NDUFS6 (ENSTGUG00000008501)	IRX4 (ENSTGUG00000008502)	IRX2 (ENSTGUG00000008512)	IRX1 (ENSTGUG00000008517)	ANKS6 (ENSTGUG00000008519)	GALNT12 (ENSTGUG00000008525)	GABBR2 (ENSTGUG00000008527)	ELP2 (ENSTGUG00000008552)	CTNNAL1 (ENSTGUG00000008579) #22	ABITRAM (ENSTGUG00000027899) #23	SLC39A6 (ENSTGUG00000008614)	CAVIN4 (ENSTGUG00000008631)	TMEFF1 (ENSTGUG00000019480)	ENSTGUG00000008651	EXOC3 (ENSTGUG00000008684)	PDCD6 (ENSTGUG00000008718)	ENSTGUG00000027181	AHRR (ENSTGUG00000008731)	MSANTD3 (ENSTGUG00000008752)	ENSTGUG00000008753	TEX10 (ENSTGUG00000008765)	INVS (ENSTGUG00000008787)	ERP44 (ENSTGUG00000008812)	STX17 (ENSTGUG00000008839)
Common canary	MODERN SPECIES		SDHA (ENSSCAG00000005992)	CCDC127 (ENSSCAG00000005996)	ENSSCAG00000006000	SLC6A19 (ENSSCAG00000006002)	SLC6A18 (ENSSCAG00000006008)	TERT (ENSSCAG00000006016)	CLPTM1L (ENSSCAG00000006166)	LPCAT1 (ENSSCAG00000006706)	NDUFS6 (ENSSCAG00000006716)	IRX2 (ENSSCAG00000006758)	IRX1 (ENSSCAG00000006799)	ANKS6 (ENSSCAG00000006820)	GALNT12 (ENSSCAG00000006835)	GABBR2 (ENSSCAG00000006879)	ELP2 (ENSSCAG00000006913)	CTNNAL1 (ENSSCAG00000007070) #22	ABITRAM (ENSSCAG00000007076) #23	SLC39A6 (ENSSCAG00000007081)	TMEFF1 (ENSSCAG00000007128)	CAVIN4 (ENSSCAG00000007134)	ENSSCAG00000007142	ENSSCAG00000007152	ENSSCAG00000007157	EXOC3 (ENSSCAG00000007160)	PDCD6 (ENSSCAG00000007167)	ENSSCAG00000007173	AHRR (ENSSCAG00000007182)	MSANTD3 (ENSSCAG00000007199)	ENSSCAG00000007201	TEX10 (ENSSCAG00000007212)	INVS (ENSSCAG00000007225)
Medium ground finch	MODERN SPECIES	14	CHMP5 (ENSGFOG00000006293)	FH (ENSGFOG00000006310)	SDHA (ENSGFOG00000006362)	CCDC127 (ENSGFOG00000006456)	SLC6A19 (ENSGFOG00000006461)	SLC6A18 (ENSGFOG00000006480)	TERT (ENSGFOG00000006576)	CLPTM1L (ENSGFOG00000006505)	LPCAT1 (ENSGFOG00000006604)	NDUFS6 (ENSGFOG00000006614)	IRX1 (ENSGFOG00000006628)	ANKS6 (ENSGFOG00000006632)	GALNT12 (ENSGFOG00000006649)	GABBR2 (ENSGFOG00000006665)	ELP2 (ENSGFOG00000006752)	CTNNAL1 (ENSGFOG00000007748) #22	ABITRAM (ENSGFOG00000007792) #23	SLC39A6 (ENSGFOG00000007800)	TMEFF1 (ENSGFOG00000007820)	CAVIN4 (ENSGFOG00000008119)	ENSGFOG00000008125	ENSGFOG00000008140	ENSGFOG00000008146	EXOC3 (ENSGFOG00000008158)	PDCD6 (ENSGFOG00000000173)	ENSGFOG00000000179	AHRR (ENSGFOG00000000350)	MSANTD3 (ENSGFOG00000000359)	ENSGFOG00000000367	TEX10 (ENSGFOG00000000382)	INVS (ENSGFOG00000000400)
Flycatcher	MODERN SPECIES	11	ENSFALG00000026970	SLC6A19 (ENSFALG00000002139)	SLC6A18 (ENSFALG00000023064)	TERT (ENSFALG00000002146)	CLPTM1L (ENSFALG00000002158)	LPCAT1 (ENSFALG00000002161)	NDUFS6 (ENSFALG00000025260)	ENSFALG00000005258	ENSFALG00000024150	IRX2 (ENSFALG00000005243)	IRX1 (ENSFALG00000005225)	ENSFALG00000005213	ENSFALG00000005188	ENSFALG00000005156	ENSFALG00000005125	CTNNAL1 (ENSFALG00000026527) #22	ENSFALG00000028605 #23	ENSFALG00000005077	ENSFALG00000005068	ENSFALG00000024903	ENSFALG00000004948	ENSFALG00000004894	ENSFALG00000025107	ENSFALG00000004890	ENSFALG00000004887	ENSFALG00000004883	MSANTD3 (ENSFALG00000004875)	ENSFALG00000023421	TEX10 (ENSFALG00000004847)	INVS (ENSFALG00000004814)	ERP44 (ENSFALG00000004800)
Great tit	MODERN SPECIES	11	SLC6A19 (ENSPMJG00000013739)	SLC6A18 (ENSPMJG00000013740)	TERT (ENSPMJG00000013741)	CLPTM1L (ENSPMJG00000013790)	LPCAT1 (ENSPMJG00000013791)	MRPL36 (ENSPMJG00000013793)	ENSPMJG00000013796	IRX4 (ENSPMJG00000013824)	IRX2 (ENSPMJG00000013858)	IRX1 (ENSPMJG00000013883)	ANKS6 (ENSPMJG00000013912)	GALNT12 (ENSPMJG00000013925)	GABBR2 (ENSPMJG00000013983)	ENSPMJG00000013984	ELP2 (ENSPMJG00000013985)	CTNNAL1 (ENSPMJG00000013995) #22	SLC39A6 (ENSPMJG00000014000)	TMEFF1 (ENSPMJG00000014029)	CAVIN4 (ENSPMJG00000014030)	ENSPMJG00000014031	EXOC3 (ENSPMJG00000014032)	PDCD6 (ENSPMJG00000014033)	ENSPMJG00000014062	AHRR (ENSPMJG00000014064)	MSANTD3 (ENSPMJG00000014067)	ENSPMJG00000014069	TEX10 (ENSPMJG00000014070)	INVS (ENSPMJG00000014119)	ERP44 (ENSPMJG00000014122)	STX17 (ENSPMJG00000014124)	NR4A3 (ENSPMJG00000014126)
Galloanserae	ANCESTRAL SPECIES		ENSGT00390000008818	ENSGT00940000154896	ENSGT00940000158906	ENSGT00390000018531	ENSGT00530000063461.A	ENSGT01030000234574.A.a	ENSGT00390000010866	ENSGT00390000015775	ENSGT00940000158596	ENSGT00940000161198	ENSGT00940000160429	ENSGT00940000157664	ENSGT00940000157173	ENSGT00940000155783	ENSGT00390000000916	ENSGT01030000234543.F #22	ENSGT00450000040303 #23	ENSGT00940000156387	ENSGT00940000160714	ENSGT00950000182910.a.b	ENSGT00940000164265.C	ENSGT01030000234613.a.a	ENSGT00960000188468	ENSGT00940000160982	ENSGT01030000234977	ENSGT00940000154486.a.b	ENSGT00390000007901	ENSGT00530000068739	ENSGT00950000182992.a.a	ENSGT00940000157688	ENSGT00930000151031
Anatidae	ANCESTRAL SPECIES	3	ENSGT00390000008818	ENSGT00940000154896	ENSGT00940000158906	ENSGT00390000018531	ENSGT00530000063461.A	ENSGT01030000234574.A.a	ENSGT00390000010866	ENSGT00390000015775	ENSGT00940000158596	ENSGT00940000161198	ENSGT00940000160429	ENSGT00940000157664	ENSGT00940000157173	ENSGT00940000155783	ENSGT00390000000916	ENSGT01030000234543.F #22	ENSGT00450000040303 #23	ENSGT00940000156387	ENSGT00940000160714	ENSGT00950000182910.a.b	ENSGT00940000164265.C	ENSGT01030000234613.a.a	ENSGT00960000188468	ENSGT00940000160982	ENSGT01030000234977	ENSGT00940000154486.a.b	ENSGT00390000007901	ENSGT00530000068739	ENSGT00950000182992.a.a	ENSGT00940000157688	ENSGT00930000151031
Pink-footed goose	MODERN SPECIES	14								IRX4 (ENSABRG00000003978)	IRX2 (ENSABRG00000003949)	ENSABRG00000003940	IRX1 (ENSABRG00000003932)	ANKS6 (ENSABRG00000003843)	GALNT12 (ENSABRG00000003830)	GABBR2 (ENSABRG00000003631)	ELP2 (ENSABRG00000003540)	CTNNAL1 (ENSABRG00000003522) #22	ABITRAM (ENSABRG00000003497) #23	SLC39A6 (ENSABRG00000003471)	ENSABRG00000003452	TMEFF1 (ENSABRG00000003407)	CAVIN4 (ENSABRG00000003396)	ENSABRG00000000760	EXOC3 (ENSABRG00000000679)	ENSABRG00000019258	PDCD6 (ENSABRG00000019255)	ENSABRG00000019250	AHRR (ENSABRG00000019246)	MSANTD3 (ENSABRG00000019244)	ENSABRG00000019238	TEX10 (ENSABRG00000019236)	INVS (ENSABRG00000019235)
Duck	MODERN SPECIES	10	SLC6A19 (ENSAPLG00000005930)	SLC6A18 (ENSAPLG00000023971)	TERT (ENSAPLG00000004975)	CLPTM1L (ENSAPLG00000004129)	LPCAT1 (ENSAPLG00000003565)	MRPL36 (ENSAPLG00000028760)	NDUFS6 (ENSAPLG00000024272)	IRX4 (ENSAPLG00000022847)	IRX2 (ENSAPLG00000024367)	IRX1 (ENSAPLG00000021490)	ANKS6 (ENSAPLG00000014196)	GALNT12 (ENSAPLG00000012197)	ENSAPLG00000025947	GABBR2 (ENSAPLG00000008633)	ELP2 (ENSAPLG00000008710)	CTNNAL1 (ENSAPLG00000008830) #22	ABITRAM (ENSAPLG00000027536) #23	SLC39A6 (ENSAPLG00000009318)	TMEFF1 (ENSAPLG00000009426)	ENSAPLG00000019691	CAVIN4 (ENSAPLG00000009681)	ENSAPLG00000009683	EXOC3 (ENSAPLG00000010055)	PDCD6 (ENSAPLG00000013444)	ENSAPLG00000018399	AHRR (ENSAPLG00000013653)	MSANTD3 (ENSAPLG00000013833)	ENSAPLG00000013907	TEX10 (ENSAPLG00000014122)	INVS (ENSAPLG00000011911)	ERP44 (ENSAPLG00000011639)
Phasianidae	DUPLICATION
Phasianidae	ANCESTRAL SPECIES																	ENSGT01030000234543.F.g #22
Phasianidae_b	ANCESTRAL SPECIES																	ENSGT01030000234543.F.g #22
Turkey	MODERN SPECIES	22	ENSMGAG00000007615	ENSMGAG00000022389	ENSMGAG00000007604	ENSMGAG00000019154	ENSMGAG00000007591	ENSMGAG00000007544	ENSMGAG00000007570	ENSMGAG00000018304	ENSMGAG00000007538	ENSMGAG00000007419	ENSMGAG00000019521	ENSMGAG00000022048	ENSMGAG00000007394	ENSMGAG00000007353 #22	ENSMGAG00000007371 #23	ENSMGAG00000019127 #22	ENSMGAG00000007303	ENSMGAG00000016816	ENSMGAG00000021014	ENSMGAG00000007244	ENSMGAG00000007222	ENSMGAG00000021412	ENSMGAG00000021513	ENSMGAG00000008114	ENSMGAG00000008109	ENSMGAG00000018360	ENSMGAG00000008045	ENSMGAG00000008029	ENSMGAG00000018380	ENSMGAG00000008020	C6orf62 (ENSMGAG00000007993)
Phasianidae	ANCESTRAL SPECIES	1	ENSGT00390000008818	ENSGT00940000154896	ENSGT00940000158906	ENSGT00390000018531	ENSGT00530000063461.A	ENSGT01030000234574.A.a	ENSGT00390000010866	ENSGT00390000015775	ENSGT00940000158596	ENSGT00940000161198	ENSGT00940000160429	ENSGT00940000157664	ENSGT00940000157173	ENSGT00940000155783	ENSGT00390000000916	ENSGT01030000234543.F.h #22	ENSGT00450000040303 #23	ENSGT00940000156387	ENSGT00940000160714	ENSGT00950000182910.a.b	ENSGT00940000164265.C	ENSGT01030000234613.a.a	ENSGT00940000160982	ENSGT01030000234977	ENSGT00940000154486.a.b	ENSGT00390000007901	ENSGT00530000068739	ENSGT00950000182992.a.a	ENSGT00940000157688	ENSGT00930000151031	ENSGT01000000214440.A.b
Japanese quail	MODERN SPECIES	11	BMPER (ENSCJPG00005006895)	BBS9 (ENSCJPG00005006907)	NT5C3A (ENSCJPG00005006909)	FKBP9 (ENSCJPG00005006910)	ENSCJPG00005006911	ENSCJPG00005006912	KBTBD2 (ENSCJPG00005006913)	AVL9 (ENSCJPG00005006914)	LSM5 (ENSCJPG00005006916)	PDE1C (ENSCJPG00005006935)	PPP1R17 (ENSCJPG00005006944)	ITPRID1 (ENSCJPG00005006948)	NEUROD6 (ENSCJPG00005006949)	ENSCJPG00005006967	ELP2 (ENSCJPG00005006969)	CTNNAL1 (ENSCJPG00005006980) #22	ABITRAM (ENSCJPG00005006981) #23	SLC39A6 (ENSCJPG00005006983)	TMEFF1 (ENSCJPG00005006985)	CAVIN4 (ENSCJPG00005006986)	ENSCJPG00005006992	EXOC3 (ENSCJPG00005007037)	PDCD6 (ENSCJPG00005007040)	ENSCJPG00005007044	AHRR (ENSCJPG00005007045)	MSANTD3 (ENSCJPG00005007057)	ENSCJPG00005007058	TEX10 (ENSCJPG00005007059)	INVS (ENSCJPG00005007060)	ERP44 (ENSCJPG00005007061)	STX17 (ENSCJPG00005007062)
Phasianidae_b	ANCESTRAL SPECIES	1	ENSGT00390000008818	ENSGT00940000154896	ENSGT00940000158906	ENSGT00390000018531	ENSGT00530000063461.A	ENSGT01030000234574.A.a	ENSGT00390000010866	ENSGT00390000015775	ENSGT00940000158596	ENSGT00940000161198	ENSGT00940000160429	ENSGT00940000157664	ENSGT00940000157173	ENSGT00940000155783	ENSGT00390000000916	ENSGT01030000234543.F.h #22	ENSGT00450000040303 #23	ENSGT00940000156387	ENSGT00940000160714.a	ENSGT00950000182910.a.b	ENSGT00940000160714.b	ENSGT00940000164265.C	ENSGT01030000234613.a.a	ENSGT00940000160982	ENSGT01030000234977	ENSGT00940000154486.a.b	ENSGT00390000007901	ENSGT00530000068739	ENSGT00950000182992.a.a	ENSGT00940000157688	ENSGT00930000151031
Turkey	MODERN SPECIES	22	ENSMGAG00000007691	ENSMGAG00000007645	ENSMGAG00000007615	ENSMGAG00000022389	ENSMGAG00000007604	ENSMGAG00000019154	ENSMGAG00000007591	ENSMGAG00000007544	ENSMGAG00000007570	ENSMGAG00000018304	ENSMGAG00000007538	ENSMGAG00000007419	ENSMGAG00000019521	ENSMGAG00000022048	ENSMGAG00000007394	ENSMGAG00000007353 #22	ENSMGAG00000007371 #23	ENSMGAG00000019127 #22	ENSMGAG00000007303	ENSMGAG00000016816	ENSMGAG00000021014	ENSMGAG00000007244	ENSMGAG00000007222	ENSMGAG00000021412	ENSMGAG00000021513	ENSMGAG00000008114	ENSMGAG00000008109	ENSMGAG00000018360	ENSMGAG00000008045	ENSMGAG00000008029	ENSMGAG00000018380
Chicken	MODERN SPECIES	11	SLC6A19 (ENSGALG00010009209)	SLC6A18 (ENSGALG00010008090)	TERT (ENSGALG00010008150)	CLPTM1L (ENSGALG00010008158)	LPCAT1 (ENSGALG00010007581)	MRPL36 (ENSGALG00010007542)	NDUFS6 (ENSGALG00010007555)	IRX4 (ENSGALG00010007564)	ENSGALG00010007574	IRX2 (ENSGALG00010007907)	IRX1 (ENSGALG00010007908)	ANKS6 (ENSGALG00010007910)	GALNT12 (ENSGALG00010007513)	GABBR2 (ENSGALG00010007536)	ELP2 (ENSGALG00010007584)	CTNNAL1 (ENSGALG00010007651) #22	FAM206A (ENSGALG00010007671) #23	SLC39A6 (ENSGALG00010007699)	TMEFF1 (ENSGALG00010008161)	CAVIN4 (ENSGALG00010008168)	ENSGALG00010008175	EXOC3 (ENSGALG00010008189)	PDCD6 (ENSGALG00010008196)	ENSGALG00010008223	AHRR (ENSGALG00010008251)	C2H9ORF30 (ENSGALG00010008255)	ENSGALG00010008298	TEX10 (ENSGALG00010008303)	INVS (ENSGALG00010008314)	ERP44 (ENSGALG00010008319)	STX17 (ENSGALG00010008334)
Lepidosauria	ANCESTRAL SPECIES	2	ENSGT00940000154766.a.a	ENSGT00940000155533.d	ENSGT00940000154952.a.b	ENSGT00940000154574.c	ENSGT00500000044852.a	ENSGT00390000004886	ENSGT00390000012731.a.a	ENSGT00940000155171.a.b	ENSGT00390000000183.g.b	ENSGT00390000000183.g.a	ENSGT00940000156325	ENSGT00940000157664	ENSGT00940000157173	ENSGT00940000155783	ENSGT00390000000916	ENSGT01030000234543.F #22	ENSGT00450000040303 #23	ENSGT00940000156387	ENSGT00940000160714	ENSGT00950000182910.a.b
tuatara	MODERN SPECIES	894									ENSSPUG00000014070	ENSSPUG00000014051	ANKS6 (ENSSPUG00000014025)	GALNT12 (ENSSPUG00000014002)	ENSSPUG00000013995	GABBR2 (ENSSPUG00000013983)	ELP2 (ENSSPUG00000013862)	CTNNAL1 (ENSSPUG00000013783) #22	ABITRAM (ENSSPUG00000013764) #23	SLC39A6 (ENSSPUG00000013752)	TMEFF1 (ENSSPUG00000013683)	CAVIN4 (ENSSPUG00000013663)
Episquamata	ANCESTRAL SPECIES	1	ENSGT00940000154766.a.a	ENSGT00940000155533.d	ENSGT00940000154952.a.b	ENSGT00940000154574.c	ENSGT00500000044852.a	ENSGT00390000004886	ENSGT00390000012731.a.a	ENSGT00940000155171.a.b	ENSGT00390000000183.g.b	ENSGT00390000000183.g.a	ENSGT00940000156325	ENSGT00940000157664	ENSGT00940000157173	ENSGT00940000155783	ENSGT00390000000916	ENSGT01030000234543.F #22	ENSGT00450000040303 #23	ENSGT00940000156387	ENSGT00940000160714	ENSGT00950000182910.a.b	ENSGT00940000157657	ENSGT00940000154896	ENSGT00940000158906	ENSGT00390000018531	ENSGT00530000063461.A	ENSGT01030000234574.A.a	ENSGT00390000010866	ENSGT00390000015775	ENSGT00940000158596	ENSGT00940000161198	ENSGT00940000160429
Laterata	ANCESTRAL SPECIES	5	ENSGT00390000009802.a	ENSGT00940000154766.a.a	ENSGT00940000155533.d	ENSGT00940000154952.a.b	ENSGT00940000154574.c	ENSGT00500000044852.a	ENSGT00390000012731.a.a	ENSGT00940000155171.a.b	ENSGT00390000000183.g.b	ENSGT00390000000183.g.a	ENSGT00940000156325	ENSGT00940000157664	ENSGT00940000157173	ENSGT00940000155783	ENSGT00390000000916	ENSGT01030000234543.F #22	ENSGT00450000040303 #23	ENSGT00940000156387	ENSGT00940000160714	ENSGT00950000182910.a.b	ENSGT00940000157657	ENSGT00940000154896	ENSGT00940000158906	ENSGT00390000018531	ENSGT00530000063461.A	ENSGT01030000234574.A.a	ENSGT00940000173658	ENSGT00390000015775	ENSGT00940000158596	ENSGT00940000161198	ENSGT00940000160429
Common wall lizard	DUPLICATION
Common wall lizard	MODERN SPECIES	95																ENSPMRG00000022190 #22	ENSPMRG00000022198 #23
Common wall lizard	MODERN SPECIES	15	ENSPMRG00000010602	DAP (ENSPMRG00000010609)	ENSPMRG00000010613	ENSPMRG00000010621	ENSPMRG00000010633	ROPN1L (ENSPMRG00000010645)	MARCHF6 (ENSPMRG00000010662)	ENSPMRG00000010684	ENSPMRG00000010688	NFX1 (ENSPMRG00000010727)	ANKS6 (ENSPMRG00000010999)	GALNT12 (ENSPMRG00000011015)	GABBR2 (ENSPMRG00000011028)	ENSPMRG00000011039	ENSPMRG00000011048	ENSPMRG00000011100 #22	ENSPMRG00000011193 #23	SLC39A6 (ENSPMRG00000011196)	TMEFF1 (ENSPMRG00000011202)	SLC12A7 (ENSPMRG00000011211)	CAVIN4 (ENSPMRG00000011235)	SLC6A19 (ENSPMRG00000011268)	ENSPMRG00000011377	ENSPMRG00000011409	ENSPMRG00000011548	TERT (ENSPMRG00000011747)	CLPTM1L (ENSPMRG00000011767)	LPCAT1 (ENSPMRG00000011784)	ENSPMRG00000011792	NDUFS6 (ENSPMRG00000011794)	ENSPMRG00000011796
Argentine black and white tegu	MODERN SPECIES	36	ENSSMRG00000015137	CTNND2 (ENSSMRG00000015141)	DAP (ENSSMRG00000015144)	ENSSMRG00000015145	ENSSMRG00000015146	ROPN1L (ENSSMRG00000015147)	MARCHF6 (ENSSMRG00000015148)	ENSSMRG00000015149	ENSSMRG00000015150	NFX1 (ENSSMRG00000015151)	ANKS6 (ENSSMRG00000015157)	GALNT12 (ENSSMRG00000015160)	GABBR2 (ENSSMRG00000015161)	ENSSMRG00000015163	ELP2 (ENSSMRG00000015164)	CTNNAL1 (ENSSMRG00000015165) #22	ABITRAM (ENSSMRG00000015167) #23	SLC39A6 (ENSSMRG00000015168)	TMEFF1 (ENSSMRG00000015171)	CAVIN4 (ENSSMRG00000015173)	SLC12A7 (ENSSMRG00000015175)	ENSSMRG00000015179	SLC6A19 (ENSSMRG00000015180)	SLC6A18 (ENSSMRG00000015183)	TERT (ENSSMRG00000015501)	CLPTM1L (ENSSMRG00000015502)	LPCAT1 (ENSSMRG00000015505)	ENSSMRG00000015507	ENSSMRG00000015508	IRX4 (ENSSMRG00000015509)	IRX2 (ENSSMRG00000015513)
Toxicofera	ANCESTRAL SPECIES	1	ENSGT00940000154766.a.a	ENSGT00940000155533.d	ENSGT00940000154952.a.b	ENSGT00940000154574.c	ENSGT00500000044852.a	ENSGT00390000004886	ENSGT00390000012731.a.a	ENSGT00940000155171.a.b	ENSGT00390000000183.g.b	ENSGT00390000000183.g.a	ENSGT00940000156325	ENSGT00940000157664	ENSGT00940000157173	ENSGT00940000155783	ENSGT00390000000916	ENSGT01030000234543.F #22	ENSGT00450000040303 #23	ENSGT00940000156387	ENSGT00940000160714	ENSGT00950000182910.a.b	ENSGT00940000157657	ENSGT00940000154896	ENSGT00940000158906	ENSGT00390000018531	ENSGT00530000063461.A	ENSGT01030000234574.A.a	ENSGT00390000010866	ENSGT00390000015775	ENSGT00940000158596	ENSGT00940000161198	ENSGT00940000160429
Lizard	DUPLICATION
Lizard	MODERN SPECIES	3	ANKRD33B (ENSACAG00000042057)	ENSACAG00000002811	ROPN1L (ENSACAG00000002810)	MARCHF6 (ENSACAG00000002675)	ENSACAG00000039612	ENSACAG00000040955	ENSACAG00000002671	ENSACAG00000002412	ENSACAG00000002349	ENSACAG00000002302	ENSACAG00000002199	ENSACAG00000040991	ENSACAG00000002071	ENSACAG00000043423	ENSACAG00000039987 #22	ENSACAG00000001940 #22	ENSACAG00000001852	ENSACAG00000039380	ENSACAG00000001796	ENSACAG00000042655	SLC12A7 (ENSACAG00000002218)	SLC6A19 (ENSACAG00000001587)	SLC6A18 (ENSACAG00000040166)	ENSACAG00000042115	TERT (ENSACAG00000001261)	ENSACAG00000038843	CLPTM1L (ENSACAG00000000974)	ENSACAG00000036824	ENSACAG00000042233	LPCAT1 (ENSACAG00000000821)	MRPL36 (ENSACAG00000000820)
Lizard	MODERN SPECIES	3	DAP (ENSACAG00000024923)	ANKRD33B (ENSACAG00000042057)	ENSACAG00000002811	ROPN1L (ENSACAG00000002810)	MARCHF6 (ENSACAG00000002675)	ENSACAG00000039612	ENSACAG00000040955	ENSACAG00000002671	ENSACAG00000002412	ENSACAG00000002349	ENSACAG00000002302	ENSACAG00000002199	ENSACAG00000040991	ENSACAG00000002071	ENSACAG00000043423	ENSACAG00000039987 #22	ENSACAG00000001940 #22	ENSACAG00000001852	ENSACAG00000039380	ENSACAG00000001796	ENSACAG00000042655	SLC12A7 (ENSACAG00000002218)	SLC6A19 (ENSACAG00000001587)	SLC6A18 (ENSACAG00000040166)	ENSACAG00000042115	TERT (ENSACAG00000001261)	ENSACAG00000038843	CLPTM1L (ENSACAG00000000974)	ENSACAG00000036824	ENSACAG00000042233	LPCAT1 (ENSACAG00000000821)
Elapidae	ANCESTRAL SPECIES	8	ENSGT00940000154766.a.a	ENSGT00940000155533.d	ENSGT00940000154952.a.b	ENSGT00940000154574.c	ENSGT00500000044852.a	ENSGT00390000004886	ENSGT00390000012731.a.a	ENSGT00940000155171.a.b	ENSGT00390000000183.g.b	ENSGT00390000000183.g.a	ENSGT00940000156325	ENSGT00940000157664	ENSGT00940000157173	ENSGT00940000155783	ENSGT00390000000916	ENSGT01030000234543.F #22	ENSGT00450000040303 #23	ENSGT00940000156387	ENSGT00940000160714.c	ENSGT00950000182910.a.b	ENSGT00940000157657	ENSGT00940000154896	ENSGT00940000158906	ENSGT00390000018531	ENSGT00530000063461.A	ENSGT01030000234574.A.a	ENSGT00940000173658	ENSGT00390000015775	ENSGT00940000158596	ENSGT00940000161198	ENSGT00940000160429
Indian cobra	MODERN SPECIES	2	DNAH5 (ENSNNAG00000002255)	CTNND2 (ENSNNAG00000001906)	DAP (ENSNNAG00000001852)	ANKRD33B (ENSNNAG00000001844)	SNRNP48 (ENSNNAG00000001823)	ROPN1L (ENSNNAG00000001800)	MARCHF6 (ENSNNAG00000001667)	ENSNNAG00000001600	ENSNNAG00000001585	ENSNNAG00000001560	ENSNNAG00000001535	ANKS6 (ENSNNAG00000001492)	GALNT12 (ENSNNAG00000001470)	GABBR2 (ENSNNAG00000001441)	ELP2 (ENSNNAG00000001397)	CTNNAL1 (ENSNNAG00000001299) #22	ABITRAM (ENSNNAG00000001260) #23	SLC39A6 (ENSNNAG00000001244)	TMEFF1 (ENSNNAG00000001223)	CAVIN4 (ENSNNAG00000001218)	SLC12A7 (ENSNNAG00000001119)	SLC6A19 (ENSNNAG00000001042)	SLC6A18 (ENSNNAG00000000999)	TERT (ENSNNAG00000000941)	CLPTM1L (ENSNNAG00000000922)	LPCAT1 (ENSNNAG00000000898)	ENSNNAG00000000889	NDUFS6 (ENSNNAG00000000877)	IRX4 (ENSNNAG00000000859)	IRX2 (ENSNNAG00000000840)	IRX1 (ENSNNAG00000000813)
Elapidae_a	ANCESTRAL SPECIES	35	ENSGT00940000155533.d	ENSGT00940000154952.a.b	ENSGT00940000154574.c	ENSGT00500000044852.a	ENSGT00390000004886	ENSGT00390000012731.a.a	ENSGT00940000155171.a.b	ENSGT00390000000183.g.b	ENSGT00390000000183.g.a	ENSGT00940000156325	ENSGT00940000157664	ENSGT00940000157173	ENSGT00940000155783	ENSGT00390000000916	ENSGT01000000215895	ENSGT01030000234543.F #22	ENSGT00450000040303 #23	ENSGT00940000156387.i	ENSGT00940000160714.c	ENSGT00950000182910.a.b	ENSGT00940000157657	ENSGT00940000154896	ENSGT00940000158906	ENSGT00390000018531	ENSGT00530000063461.A	ENSGT01030000234574.A.a	ENSGT00940000173658	ENSGT00390000015775	ENSGT00940000158596	ENSGT00940000161198	ENSGT00940000160429
Blue-lipped sea krait	MODERN SPECIES	7184																CTNNAL1 (ENSLLTG00000010083) #22	ABITRAM (ENSLLTG00000010247) #23	ENSLLTG00000010259
Acanthophiinae	ANCESTRAL SPECIES	35	ENSGT00940000155533.d	ENSGT00940000154952.a.b	ENSGT00940000154574.c.i	ENSGT00500000044852.a	ENSGT00390000004886	ENSGT00390000012731.a.a	ENSGT00940000155171.a.b	ENSGT00390000000183.g.b	ENSGT00390000000183.g.a	ENSGT00940000156325	ENSGT00940000157664	ENSGT00940000157173	ENSGT00940000155783	ENSGT00390000000916	ENSGT01000000215895	ENSGT01030000234543.F #22	ENSGT00450000040303 #23	ENSGT00940000156387.i	ENSGT00940000160714.c	ENSGT00950000182910.a.b	ENSGT00940000157657	ENSGT00940000154896	ENSGT00940000158906	ENSGT00390000018531	ENSGT00530000063461.A	ENSGT01030000234574.A.a	ENSGT00940000173658	ENSGT00390000015775	ENSGT00940000158596	ENSGT00940000161198	ENSGT00940000160429
Mainland tiger snake	MODERN SPECIES	45													GABBR2 (ENSNSUG00000010025)	ELP2 (ENSNSUG00000010026)	ENSNSUG00000010028	ENSNSUG00000010030 #22	ABITRAM (ENSNSUG00000010032) #23	SLC39A6 (ENSNSUG00000010034)	TMEFF1 (ENSNSUG00000010036)	CAVIN4 (ENSNSUG00000010038)	SLC12A7 (ENSNSUG00000010041)	SLC6A19 (ENSNSUG00000010044)	TERT (ENSNSUG00000010047)	CLPTM1L (ENSNSUG00000010147)	LPCAT1 (ENSNSUG00000010206)	ENSNSUG00000010207	ENSNSUG00000010208	IRX4 (ENSNSUG00000010212)	IRX2 (ENSNSUG00000010220)	IRX1 (ENSNSUG00000010225)	ADAMTS16 (ENSNSUG00000010227)
Eastern brown snake	MODERN SPECIES	15	DNAH5 (ENSPTXG00000013268)	CTNND2 (ENSPTXG00000013231)	DAP (ENSPTXG00000013228)	ANKRD33B (ENSPTXG00000013224)	SNRNP48 (ENSPTXG00000013222)	ROPN1L (ENSPTXG00000013221)	MARCHF6 (ENSPTXG00000013220)	ENSPTXG00000013219	ENSPTXG00000013218	NFX1 (ENSPTXG00000004148)	ANKS6 (ENSPTXG00000004146)	GALNT12 (ENSPTXG00000004143)	GABBR2 (ENSPTXG00000004142)	ELP2 (ENSPTXG00000004141)	ENSPTXG00000004140	CTNNAL1 (ENSPTXG00000004139) #22	ABITRAM (ENSPTXG00000004137) #23	SLC39A6 (ENSPTXG00000004136)	TMEFF1 (ENSPTXG00000004135)	CAVIN4 (ENSPTXG00000004134)	SLC12A7 (ENSPTXG00000004132)	SLC6A19 (ENSPTXG00000004129)	ENSPTXG00000004128	TERT (ENSPTXG00000004127)	ENSPTXG00000004126	CLPTM1L (ENSPTXG00000004125)	LPCAT1 (ENSPTXG00000004123)	ENSPTXG00000004122	NDUFS6 (ENSPTXG00000004121)	IRX4 (ENSPTXG00000004120)	IRX2 (ENSPTXG00000004119)
Anura	ANCESTRAL SPECIES	1	ENSGT00940000160746	ENSGT00390000018047	ENSGT00940000160025	ENSGT00940000158009	ENSGT00390000012189	ENSGT00390000009802.b	ENSGT00390000009802.a	ENSGT00940000161224	ENSGT01030000234574.A.a	ENSGT00950000182886.b.b	ENSGT00940000153665.a	ENSGT00940000161612	ENSGT00390000014501	ENSGT00940000155783	ENSGT00390000000916	ENSGT01030000234543.F #22	ENSGT00450000040303 #23	ENSGT00940000156387.a	ENSGT00940000160714	ENSGT00950000182910.a.b
Leishan spiny toad	MODERN SPECIES	8	OTULINL (ENSLLEG00000021682)	SLC6A3 (ENSLLEG00000021446)	LPCAT1 (ENSLLEG00000021217)	ENSLLEG00000021185	SRD5A1 (ENSLLEG00000021076)	NSUN2 (ENSLLEG00000020504)	UBE2QL1 (ENSLLEG00000020432)	MED10 (ENSLLEG00000020340)	ENSLLEG00000020312	ENSLLEG00000020259	ENSLLEG00000020200	GABBR2 (ENSLLEG00000019673)	ELP2 (ENSLLEG00000018935)	ENSLLEG00000018812	ENSLLEG00000018765	CTNNAL1 (ENSLLEG00000018095) #22	ABITRAM (ENSLLEG00000018011) #23	SLC39A6 (ENSLLEG00000017720)	ENSLLEG00000017694	ENSLLEG00000017658	TMEFF1 (ENSLLEG00000017549)	CAVIN4 (ENSLLEG00000017484)	ENSLLEG00000017454	ENSLLEG00000016618	ENSLLEG00000016574	NFX1 (ENSLLEG00000015444)	ENSLLEG00000015351	ENSLLEG00000015286	CHMP5 (ENSLLEG00000015034)	BAG1 (ENSLLEG00000014809)	ENSLLEG00000014780
Frog	MODERN SPECIES	6	ENSXETG00000045086	ENSXETG00000042490	lpcat1 (ENSXETG00000001729)	srd5a1 (ENSXETG00000001731)	nsun2 (ENSXETG00000001732)	ube2ql1 (ENSXETG00000001734)	med10 (ENSXETG00000026404)	ENSXETG00000048905	ENSXETG00000046385	gabbr2 (ENSXETG00000018917)	elp2 (ENSXETG00000018920)	ENSXETG00000042006	ENSXETG00000046515	ENSXETG00000047228	ENSXETG00000045172	ctnnal1 (ENSXETG00000018934) #22	abitram (ENSXETG00000027667) #23	ENSXETG00000014976	ENSXETG00000044645	ENSXETG00000042981	tmeff1 (ENSXETG00000027666)	dnah8 (ENSXETG00000014981)	ENSXETG00000042876	nfx1 (ENSXETG00000014997)	ENSXETG00000047169	ENSXETG00000044420	epb41l4b (ENSXETG00000034898) #19	ENSXETG00000043957	ptpn3 (ENSXETG00000003648) #17	ENSXETG00000049356	ENSXETG00000045885
Coelacanth	MODERN SPECIES	691															ELP2 (ENSLACG00000014930)	CTNNAL1 (ENSLACG00000013225) #22	ABITRAM (ENSLACG00000013106) #23	IFT57 (ENSLACG00000011996)	CDH20 (ENSLACG00000010875)	ENSLACG00000008441	ENSLACG00000005006	ENSLACG00000003388
Actinopterygii	ANCESTRAL SPECIES	2	ENSGT00940000157768	ENSGT00940000157780	ENSGT00940000161037	ENSGT00940000154222.d.b	ENSGT00390000009677	ENSGT00390000004417.a	ENSGT00390000008749.e	ENSGT00940000155994	ENSGT00940000162490	ENSGT00390000013383	ENSGT00390000002142	ENSGT00940000163607	ENSGT00940000157173	ENSGT00940000155783	ENSGT00390000000916	ENSGT01030000234543.F #22	ENSGT00450000040303 #23	ENSGT00690000103873	ENSGT00940000156215	ENSGT00940000177637	ENSGT00940000159300	ENSGT00940000159104	ENSGT00940000158587	ENSGT00950000182872.f.a.b	ENSGT00940000159581	ENSGT00390000004215.a.b.b.c.b	ENSGT00940000158421	ENSGT00940000161897.b.b	ENSGT00390000018422	ENSGT00940000161897.b.a	ENSGT00940000163790
Reedfish	MODERN SPECIES	4	lrrc3b (ENSECRG00000016232)	ENSECRG00000016198	NEK10 (ENSECRG00000016091)	septin7a (ENSECRG00000015883)	eepd1 (ENSECRG00000015798)	MATCAP2 (ENSECRG00000015772)	anln (ENSECRG00000015627)	elmo1 (ENSECRG00000015389)	rp9 (ENSECRG00000015285)	si:dkey-184p18.2 (ENSECRG00000015259)	ENSECRG00000015233	poc1bl (ENSECRG00000015195)	GALNT12 (ENSECRG00000015151)	gabbr2 (ENSECRG00000015092)	elp2 (ENSECRG00000014981)	ctnnal1 (ENSECRG00000014630) #22	abitram (ENSECRG00000014492) #23	ENSECRG00000014469	ENSECRG00000014444	ENSECRG00000014377	PHF20L1 (ENSECRG00000014272)	sla1a (ENSECRG00000014234)	tg (ENSECRG00000013536)	ccn4a (ENSECRG00000013255)	ndrg1a (ENSECRG00000017437)	ptp4a3a (ENSECRG00000017413)	csnk2a1 (ENSECRG00000017326)	HSF1 (ENSECRG00000017251)	SCX (ENSECRG00000017218)	bop1 (ENSECRG00000017193)	hgh1 (ENSECRG00000017167)
Neopterygii	ANCESTRAL SPECIES	34	ENSGT00940000157768	ENSGT00940000157780	ENSGT00940000161037	ENSGT00940000154222.d.b	ENSGT00390000009677	ENSGT00390000004417.a	ENSGT00390000008749.e	ENSGT00940000155994	ENSGT00940000162490	ENSGT00390000013383	ENSGT00940000163607	ENSGT00940000157173	ENSGT00940000171718	ENSGT00940000155783	ENSGT00390000000916	ENSGT01030000234543.F #22	ENSGT00450000040303 #23	ENSGT00690000103873	ENSGT00940000156215	ENSGT00940000177637	ENSGT00940000159300	ENSGT00940000159104	ENSGT00940000158587	ENSGT00950000182872.f.a.b	ENSGT00940000159581	ENSGT00390000004215.a.b.b.c.b	ENSGT00940000158421	ENSGT00940000161897.b.a	ENSGT00390000018422	ENSGT00940000161897.b.b	ENSGT00940000163790
Spotted gar	MODERN SPECIES	649	OXSM (ENSLOCG00000006960)	lrrc3b (ENSLOCG00000018332)	NEK10 (ENSLOCG00000006970)	septin7a (ENSLOCG00000006999)	eepd1 (ENSLOCG00000007030)	MATCAP2 (ENSLOCG00000007046)	anln (ENSLOCG00000007059)	elmo1 (ENSLOCG00000007091)	rp9 (ENSLOCG00000007119)	si:dkey-184p18.2 (ENSLOCG00000007138)	poc1bl (ENSLOCG00000007151)	GALNT12 (ENSLOCG00000007174)	ENSLOCG00000018333	gabbr2 (ENSLOCG00000007187)	elp2 (ENSLOCG00000007202)	ctnnal1 (ENSLOCG00000007216) #22	abitram (ENSLOCG00000007233) #23	ENSLOCG00000007253	PHF20L1 (ENSLOCG00000007267)	tg (ENSLOCG00000007302)	sla1a (ENSLOCG00000007319)	ccn4a (ENSLOCG00000007334)	ndrg1a (ENSLOCG00000007343)	ptp4a3a (ENSLOCG00000007367)	csnk2a1 (ENSLOCG00000007377)	ENSLOCG00000007389	ENSLOCG00000007398	HSF1 (ENSLOCG00000007411)	bop1 (ENSLOCG00000007429)	SCX (ENSLOCG00000007444)	ENSLOCG00000007454
Osteoglossocephalai	ANCESTRAL SPECIES	88	ENSGT01100000263551.b.b.b	ENSGT00940000157957	ENSGT00730000111097	ENSGT00470000042293.a.a	ENSGT00940000159968	ENSGT00390000004541	ENSGT00550000075032	ENSGT00940000155994	ENSGT00940000162490	ENSGT00390000013383	ENSGT00940000163607	ENSGT00940000157173	ENSGT00940000171718	ENSGT00940000155783	ENSGT00390000000916	ENSGT01030000234543.F #22	ENSGT00450000040303 #23
Osteoglossiformes	ANCESTRAL SPECIES	6	ENSGT00390000003442	ENSGT01100000263551.b.b.b	ENSGT00940000157957	ENSGT00730000111097	ENSGT00470000042293.a.a	ENSGT00940000159968	ENSGT00390000004541	ENSGT00550000075032	ENSGT00940000155994.a	ENSGT00940000162490	ENSGT00390000013383	ENSGT00940000163607	ENSGT00940000157173	ENSGT00940000155783	ENSGT00390000000916	ENSGT01030000234543.F #22	ENSGT00450000040303 #23	ENSGT00940000156215.p	ENSGT00940000159104.a	ENSGT00940000158587.c.b	ENSGT00950000182872.f.a.b.p	ENSGT00940000159581.a	ENSGT00390000004215.a.b.b.c.b.a	ENSGT00940000163549	ENSGT00940000158421	ENSGT00940000161897.b.a	ENSGT00390000018422	ENSGT00390000016546	ENSGT00940000160387	ENSGT00940000156930.z	ENSGT00940000160042
Asian bonytongue	MODERN SPECIES	15	VPS50 (ENSSFOG00015011864)	hepacam2 (ENSSFOG00015025189)	cdk6 (ENSSFOG00015011807)	FAM133B (ENSSFOG00015011791)	ENSSFOG00015011745	efcab1 (ENSSFOG00015011704)	rbm48 (ENSSFOG00015031250)	pex1 (ENSSFOG00015011673)	ELMO1 (ENSSFOG00015011599)	rp9 (ENSSFOG00015032725)	si:dkey-184p18.2 (ENSSFOG00015025484)	poc1bl (ENSSFOG00015011525)	GALNT12 (ENSSFOG00015011438)	gabbr2 (ENSSFOG00015011370)	elp2 (ENSSFOG00015011290)	ctnnal1 (ENSSFOG00015011192) #22	abitram (ENSSFOG00015011127) #23	PHF20L1 (ENSSFOG00015011039)	SLA (ENSSFOG00015010992)	ccn4a (ENSSFOG00015010968)	ndrg1a (ENSSFOG00015010916)	PTP4A3 (ENSSFOG00015010871)	ENSSFOG00015010793	hsf1 (ENSSFOG00015010692)	SCX (ENSSFOG00015010672)	bop1 (ENSSFOG00015010596)	hgh1 (ENSSFOG00015010554)	RECQL4 (ENSSFOG00015010493)	ENSSFOG00015029222	ENSSFOG00015010346	scrt1a (ENSSFOG00015001195)
P. kingsleyae	MODERN SPECIES	13	ENSPKIG00000000877	ENSPKIG00000000860	ENSPKIG00000000848	ENSPKIG00000000843	efcab1 (ENSPKIG00000000818)	rbm48 (ENSPKIG00000000801)	ENSPKIG00000000779	pex1 (ENSPKIG00000000748)	ELMO1 (ENSPKIG00000000608)	rp9 (ENSPKIG00000000552)	si:dkey-184p18.2 (ENSPKIG00000000539)	poc1bl (ENSPKIG00000000463)	GALNT12 (ENSPKIG00000000448)	gabbr2 (ENSPKIG00000000392)	elp2 (ENSPKIG00000020740)	ctnnal1 (ENSPKIG00000020665) #22	abitram (ENSPKIG00000020713) #23	SLA (ENSPKIG00000020624)	ccn4a (ENSPKIG00000020602)	ndrg1a (ENSPKIG00000020564)	si:rp71-45k5.2 (ENSPKIG00000020525)	ENSPKIG00000020506	ENSPKIG00000020418	HSF1 (ENSPKIG00000020336)	scxa (ENSPKIG00000020300)	bop1 (ENSPKIG00000020273)	hgh1 (ENSPKIG00000020253)	RECQL4 (ENSPKIG00000020206)	MROH1 (ENSPKIG00000020137)	ENSPKIG00000020105	scrt1a (ENSPKIG00000020085)
Clupeocephala	ANCESTRAL SPECIES	40	ENSGT00730000111097	ENSGT00470000042293.a.a	ENSGT00940000177506	ENSGT00940000177254	ENSGT00940000159968	ENSGT00390000004541	ENSGT00550000075032	ENSGT00940000155994	ENSGT00940000162490	ENSGT00390000013383	ENSGT00940000163607	ENSGT00940000157173	ENSGT00940000171718	ENSGT00940000155783	ENSGT00390000000916	ENSGT01030000234543.F #22	ENSGT00450000040303 #23	ENSGT00940000159104.c	ENSGT00940000158587.c.b	ENSGT00950000182872.f.a.b.p	ENSGT01030000234863	ENSGT00940000159581.b.b	ENSGT00390000004215.a.b.b.c.b.c	ENSGT01060000248801	ENSGT00740000117011	ENSGT00940000163549	ENSGT00940000161897.b.a	ENSGT00390000018422	ENSGT00940000163790	ENSGT00390000016546	ENSGT00940000160387
Euteleosteomorpha	ANCESTRAL SPECIES	47	ENSGT00940000157957	ENSGT00730000111097	ENSGT00470000042293.a.a	ENSGT00940000177506	ENSGT00940000177254	ENSGT00940000159968	ENSGT00390000004541	ENSGT00550000075032	ENSGT00940000155994	ENSGT00940000162490	ENSGT00390000013383	ENSGT00940000163607	ENSGT00940000157173	ENSGT00940000155783	ENSGT00390000000916	ENSGT01030000234543.F #22	ENSGT00450000040303 #23	ENSGT00940000159104.c	ENSGT00940000158587.c.b	ENSGT00950000182872.f.a.b.p	ENSGT01030000234863	ENSGT00940000159581.b.b	ENSGT00390000004215.a.b.b.c.b.c	ENSGT01060000248801	ENSGT00740000117011	ENSGT00940000163549	ENSGT00940000161897.b.a	ENSGT00390000018422	ENSGT00940000163790	ENSGT00390000016546	ENSGT00940000160387
Acanthomorphata	ANCESTRAL SPECIES	55	ENSGT00950000183168.B.a	ENSGT00950000182962.b.a	ENSGT01060000248564.b.a.a.a	ENSGT00940000177340	ENSGT00940000160932	ENSGT00940000159968	ENSGT00390000004541	ENSGT00550000075032	ENSGT00940000155994	ENSGT00940000162490	ENSGT00390000013383	ENSGT00940000163607	ENSGT00940000157173	ENSGT00940000155783	ENSGT00390000000916	ENSGT01030000234543.F #22	ENSGT00450000040303 #23	ENSGT00940000159104.c	ENSGT00940000158587.c.b	ENSGT00950000182872.f.a.b.p	ENSGT00910000145033	ENSGT00940000155471.c	ENSGT00390000008295.b	ENSGT00940000155519.qb.b	ENSGT00390000011422	ENSGT00440000034270.a.a	ENSGT00940000156347	ENSGT00390000010145.c.b	ENSGT00940000155602	ENSGT00800000125328	ENSGT00390000011295.b
Euacanthomorphacea	ANCESTRAL SPECIES		ENSGT00950000182962.b.a	ENSGT01060000248564.b.a.a.a	ENSGT00940000177340	ENSGT00940000160932	ENSGT01100000263491.a.a.c.b	ENSGT00940000159968	ENSGT00390000004541	ENSGT00550000075032	ENSGT00940000155994	ENSGT00940000162490	ENSGT00390000013383	ENSGT00940000163607	ENSGT00940000157173	ENSGT00940000155783	ENSGT00390000000916	ENSGT01030000234543.F #22	ENSGT00450000040303 #23	ENSGT00940000159104.c	ENSGT00940000158587.c.b	ENSGT00950000182872.f.a.b.p	ENSGT00910000145033	ENSGT00940000155471.c	ENSGT00390000008295.b	ENSGT00940000155519.qb.b	ENSGT00390000011422	ENSGT00440000034270.a.a	ENSGT00940000156347	ENSGT00390000010145.c.b	ENSGT00940000155602	ENSGT00800000125328	ENSGT00390000011295.b
Percomorphaceae	ANCESTRAL SPECIES	10	ENSGT00950000182962.b.a	ENSGT01060000248564.b.a.a.a	ENSGT00940000177340	ENSGT00940000160932	ENSGT01100000263491.a.a.c.b	ENSGT00940000159968	ENSGT00390000004541	ENSGT00550000075032	ENSGT00940000155994	ENSGT00940000162490	ENSGT00390000013383	ENSGT00940000163607	ENSGT00940000157173	ENSGT00940000155783	ENSGT00390000000916	ENSGT01030000234543.F #22	ENSGT00450000040303 #23	ENSGT00940000159104.c	ENSGT00940000158587.c.b	ENSGT00950000182872.f.a.b.p	ENSGT00910000145033	ENSGT00940000155471.c	ENSGT00390000008295.b	ENSGT00940000155519.qb.b	ENSGT00390000011422	ENSGT00440000034270.a.a	ENSGT00940000156347	ENSGT00390000010145.c.b	ENSGT00940000155602	ENSGT00800000125328	ENSGT00390000011295.b
Tiger tail seahorse	MODERN SPECIES	462										rp9 (ENSHCOG00000013490)	si:dkey-184p18.2 (ENSHCOG00000013470)	poc1bl (ENSHCOG00000013460)	ENSHCOG00000013443	gabbr2 (ENSHCOG00000013426)	elp2 (ENSHCOG00000013399)	ctnnal1 (ENSHCOG00000013362) #22	abitram (ENSHCOG00000013319) #23	sla1a (ENSHCOG00000013306)	ccn4a (ENSHCOG00000013291)	ndrg1a (ENSHCOG00000013279)	tube1 (ENSHCOG00000013250)	RPRD1A (ENSHCOG00000013245)	ENSHCOG00000013227	nfyc (ENSHCOG00000013215)	KCNQ4 (ENSHCOG00000013175)	TINAGL1 (ENSHCOG00000000380)	UBQLN4 (ENSHCOG00000013142)	rab25a (ENSHCOG00000013095)	ENSHCOG00000013087	kat2b (ENSHCOG00000013077)	spire1a (ENSHCOG00000013060)
Percomorphaceae_B	ANCESTRAL SPECIES	15	ENSGT00940000177340	ENSGT00940000160932	ENSGT00940000165470	ENSGT00940000154446.b.b.a	ENSGT01100000263491.a.a.c.b	ENSGT00940000159968	ENSGT00390000004541	ENSGT00550000075032	ENSGT00940000155994	ENSGT00940000162490	ENSGT00390000013383	ENSGT00940000163607	ENSGT00940000157173	ENSGT00940000155783	ENSGT00390000000916	ENSGT01030000234543.F #22	ENSGT00450000040303 #23	ENSGT00940000159104.c	ENSGT00940000158587.c.b	ENSGT00950000182872.f.a.b.p	ENSGT00910000145033	ENSGT00940000155471.c	ENSGT00390000008295.b	ENSGT00940000155519.qb.b.f	ENSGT00390000011422	ENSGT00440000034270.a.a	ENSGT00940000156347	ENSGT00390000010145.c.b	ENSGT00940000155602.r.b	ENSGT00800000125328	ENSGT00940000155602.r.a
Ovalentaria	ANCESTRAL SPECIES	12	ENSGT00950000182962.b.a	ENSGT01060000248564.b.a.a.a	ENSGT00940000177340	ENSGT00940000160932	ENSGT00940000159968	ENSGT00390000004541	ENSGT00940000165470	ENSGT00550000075032	ENSGT00940000155994	ENSGT00940000162490	ENSGT00390000013383	ENSGT00940000163607	ENSGT00940000157173	ENSGT00940000155783	ENSGT00390000000916	ENSGT01030000234543.F #22	ENSGT00450000040303 #23	ENSGT00940000159104.c	ENSGT00940000158587.c.b	ENSGT00950000182872.f.a.b.p	ENSGT00910000145033	ENSGT00940000155471.c	ENSGT00390000008295.b	ENSGT00940000155519.qb.b.f	ENSGT00390000011422	ENSGT00440000034270.a.a	ENSGT00940000156347	ENSGT00390000010145.c.b	ENSGT00940000155602.r.b	ENSGT00800000125328	ENSGT00940000155602.r.a
Atherinomorphae	ANCESTRAL SPECIES	12	ENSGT00950000182962.b.a	ENSGT01060000248564.b.a.a.a	ENSGT00940000177340	ENSGT00940000160932	ENSGT00940000159968	ENSGT00390000004541	ENSGT00940000165470	ENSGT00550000075032	ENSGT00940000155994	ENSGT00940000162490	ENSGT00390000013383	ENSGT00940000163607	ENSGT00940000157173	ENSGT00940000155783	ENSGT00390000000916	ENSGT01030000234543.F #22	ENSGT00450000040303 #23	ENSGT00940000159104.c	ENSGT00940000158587.c.b	ENSGT00950000182872.f.a.b.p	ENSGT00910000145033	ENSGT00940000155471.c	ENSGT00390000008295.b	ENSGT00940000155519.qb.b.f	ENSGT00390000011422	ENSGT00440000034270.a.a	ENSGT00940000156347	ENSGT00390000010145.c.b	ENSGT00940000155602.r.b	ENSGT00800000125328	ENSGT00390000011295.b
Cyprinodontiformes	ANCESTRAL SPECIES	10	ENSGT00950000182962.b.a	ENSGT01060000248564.b.a.a.a	ENSGT00940000177340	ENSGT00940000160932	ENSGT00940000159968	ENSGT00390000004541	ENSGT00940000165470	ENSGT00550000075032	ENSGT00940000155994	ENSGT00940000162490	ENSGT00390000013383	ENSGT00940000163607	ENSGT00940000157173	ENSGT00940000155783	ENSGT00390000000916	ENSGT01030000234543.F #22	ENSGT00450000040303 #23	ENSGT00940000159104.c	ENSGT00940000158587.c.b	ENSGT00950000182872.f.a.b.p	ENSGT00940000155471.c	ENSGT00390000008295.b	ENSGT00940000155519.qb.b.f	ENSGT00390000011422	ENSGT00440000034270.a.a	ENSGT00940000164286.j.b.a.a.a.k	ENSGT00940000156347	ENSGT00390000010145.c.b	ENSGT00940000155602.r.b	ENSGT00800000125328	ENSGT00390000011295.b
Aplocheiloidei	ANCESTRAL SPECIES	9	ENSGT01060000248564.b.a.a.a	ENSGT00940000177340	ENSGT00940000160932	ENSGT00940000155843	ENSGT00940000155156.b	ENSGT00940000159968	ENSGT00390000004541	ENSGT00550000075032	ENSGT00940000155994	ENSGT00940000162490	ENSGT00390000013383	ENSGT00940000163607	ENSGT00940000157173	ENSGT00940000155783	ENSGT00390000000916	ENSGT01030000234543.F #22	ENSGT00450000040303 #23	ENSGT00940000159104.c	ENSGT00940000158587.c.b	ENSGT00950000182872.f.a.b.p	ENSGT01030000234863	ENSGT00940000155471.c	ENSGT00390000008295.b	ENSGT00940000155519.qb.b.f	ENSGT00390000011422	ENSGT00440000034270.a.a	ENSGT00940000164286.j.b.a.a.a.k	ENSGT00940000156347	ENSGT00390000010145.c.b	ENSGT00940000155602.r.b	ENSGT00390000011295.b
Mangrove rivulus	MODERN SPECIES	2	ENSKMAG00000003258	ENSKMAG00000003243	ENSKMAG00000003223	gpr3 (ENSKMAG00000003208)	ENSKMAG00000003182	efcab1 (ENSKMAG00000003150)	rbm48 (ENSKMAG00000003131)	pex1 (ENSKMAG00000003102)	elmo1 (ENSKMAG00000002985)	rp9 (ENSKMAG00000002948)	si:dkey-184p18.2 (ENSKMAG00000002936)	poc1bl (ENSKMAG00000002876)	GALNT12 (ENSKMAG00000002828)	gabbr2 (ENSKMAG00000002720)	elp2 (ENSKMAG00000002613)	ctnnal1 (ENSKMAG00000002550) #22	abitram (ENSKMAG00000002581) #23	sla1a (ENSKMAG00000002522)	ccn4a (ENSKMAG00000002506)	ndrg1a (ENSKMAG00000002428)	ENSKMAG00000002393	ENSKMAG00000002327	dync1li1 (ENSKMAG00000002306)	ENSKMAG00000002220	mrpl3 (ENSKMAG00000002193)	cspg5b (ENSKMAG00000002172)	ENSKMAG00000002162	ENSKMAG00000002137	ENSKMAG00000002118	ENSKMAG00000002105	klhl7 (ENSKMAG00000002041)
Turquoise killifish	MODERN SPECIES	1628	cacng8a (ENSNFUG00015020419)	ENSNFUG00015020415	ENSNFUG00015020414	ENSNFUG00015020409	ENSNFUG00015020407	RP9 (ENSNFUG00015020400)	C18ORF21 (ENSNFUG00015020399)	GALNT12 (ENSNFUG00015020318)	poc1bl (ENSNFUG00015020283)	ENSNFUG00015020275	gabbr2 (ENSNFUG00015020143)	ENSNFUG00015020132	elp2 (ENSNFUG00015019890)	ENSNFUG00015019873	ENSNFUG00015019870	CTNNAL1 (ENSNFUG00015019336) #22	FAM206A (ENSNFUG00015019313) #23	sla1a (ENSNFUG00015019311)	WISP1 (ENSNFUG00015019309)	ndrg1a (ENSNFUG00015019166)	ENSNFUG00015019153	ENSNFUG00015018975	DYNC1LI1 (ENSNFUG00015018562)	ENSNFUG00015018545	ENSNFUG00015018294	MRPL3 (ENSNFUG00015018276)	CSPG5B (ENSNFUG00015018272)	pdik1l (ENSNFUG00015018267)	ENSNFUG00015018265	FOXO6 (ENSNFUG00015018262)	ENSNFUG00015018260
Cyprinodontoidei	ANCESTRAL SPECIES	11	ENSGT00950000182962.b.a	ENSGT01060000248564.b.a.a.a	ENSGT00940000177340	ENSGT00940000160932	ENSGT00940000159968	ENSGT00390000004541	ENSGT00940000165470	ENSGT00550000075032	ENSGT00940000155994	ENSGT00940000162490	ENSGT00390000013383	ENSGT00940000163607	ENSGT00940000157173	ENSGT00940000155783	ENSGT00390000000916	ENSGT01030000234543.F #22	ENSGT00450000040303 #23	ENSGT00940000159104.c	ENSGT00940000158587.c.b	ENSGT00950000182872.f.a.b.p	ENSGT00910000145033	ENSGT00940000155471.c	ENSGT00390000008295.b	ENSGT00940000155519.qb.b.f	ENSGT00390000011422	ENSGT00440000034270.a.a	ENSGT00940000156347	ENSGT00390000010145.c.b	ENSGT00940000155602.r.b	ENSGT00800000125328	ENSGT00390000011295.b
Poeciliinae	ANCESTRAL SPECIES	18	ENSGT00390000018883	ENSGT00950000182962.b.a	ENSGT01060000248564.b.a.a.a	ENSGT00940000177340	ENSGT00940000160932	ENSGT00940000165470	ENSGT00390000004541	ENSGT00550000075032	ENSGT00940000155994	ENSGT00940000162490	ENSGT00390000013383	ENSGT00940000163607	ENSGT00940000157173	ENSGT00940000155783	ENSGT00390000000916	ENSGT01030000234543.F #22	ENSGT00450000040303 #23	ENSGT00940000159104.c	ENSGT00940000158587.c.b	ENSGT00950000182872.f.a.b.p	ENSGT00910000145033	ENSGT00940000155471.c	ENSGT00390000008295.b	ENSGT00940000155519.qb.b.f	ENSGT00390000011422	ENSGT00440000034270.a.a	ENSGT00940000156347	ENSGT00390000010145.c.b	ENSGT00940000155602.r.b	ENSGT00800000125328	ENSGT00390000011295.b
Poecilia	ANCESTRAL SPECIES	24	ENSGT00390000018883	ENSGT00950000182962.b.a	ENSGT01060000248564.b.a.a.a	ENSGT00940000177340	ENSGT00940000160932	ENSGT00940000165470	ENSGT00390000004541	ENSGT00550000075032	ENSGT00940000155994	ENSGT00940000162490	ENSGT00390000013383	ENSGT00940000163607	ENSGT00940000157173	ENSGT00940000155783	ENSGT00390000000916	ENSGT01030000234543.F #22	ENSGT00450000040303 #23	ENSGT00940000159104.c	ENSGT00940000158587.c.b	ENSGT00950000182872.f.a.b.p	ENSGT00910000145033	ENSGT00940000155471.c	ENSGT00390000008295.b	ENSGT00940000155519.qb.b.f	ENSGT00390000011422	ENSGT00440000034270.a.a	ENSGT00940000156347	ENSGT00390000010145.c.b	ENSGT00940000155602.r.b	ENSGT00800000125328	ENSGT00390000011295.b
NAME_6	ANCESTRAL SPECIES	21	ENSGT00940000157554	ENSGT00390000018883	ENSGT00950000182962.b.a	ENSGT01060000248564.b.a.a.a	ENSGT00940000160932	ENSGT00940000165470	ENSGT00390000004541	ENSGT00550000075032	ENSGT00940000155994	ENSGT00940000162490	ENSGT00390000013383	ENSGT00940000163607	ENSGT00940000157173	ENSGT00940000155783	ENSGT00390000000916	ENSGT01030000234543.F #22	ENSGT00450000040303 #23	ENSGT00940000159104.c	ENSGT00940000158587.c.b	ENSGT00950000182872.f.a.b.p	ENSGT00940000155471.c	ENSGT00390000008295.b	ENSGT00940000155519.qb.b.f	ENSGT00390000011422	ENSGT00440000034270.a.a	ENSGT00940000156347	ENSGT00390000010145.c.b	ENSGT00940000155602.r.b	ENSGT00800000125328	ENSGT00390000011295.b	ENSGT00390000014833
Amazon molly	MODERN SPECIES	273	ENSPFOG00000022762	ENSPFOG00000006884	wasf2 (ENSPFOG00000006805)	gpr3 (ENSPFOG00000020064)	sytl1 (ENSPFOG00000006726)	ENSPFOG00000006660	rbm48 (ENSPFOG00000006610)	pex1 (ENSPFOG00000006185)	elmo1 (ENSPFOG00000005937)	rp9 (ENSPFOG00000005886)	si:dkey-184p18.2 (ENSPFOG00000005865)	poc1bl (ENSPFOG00000005740)	GALNT12 (ENSPFOG00000005544)	gabbr2 (ENSPFOG00000005184)	elp2 (ENSPFOG00000004952)	ctnnal1 (ENSPFOG00000004435) #22	abitram (ENSPFOG00000004337) #23	sla1a (ENSPFOG00000004247)	ccn4a (ENSPFOG00000004167)	ndrg1a (ENSPFOG00000003913)	ctnnb2 (ENSPFOG00000003671)	dync1li1 (ENSPFOG00000003447)	ENSPFOG00000003080	mrpl3 (ENSPFOG00000002850)	ENSPFOG00000023771	ENSPFOG00000002491	ASTE1 (ENSPFOG00000002412)	klhl7 (ENSPFOG00000002256)	ENSPFOG00000022149	hycc1 (ENSPFOG00000002141)	TOMM7 (ENSPFOG00000002104)
Sailfin molly	MODERN SPECIES	35														gabbr2 (ENSPLAG00000002866)	elp2 (ENSPLAG00000002877)	ctnnal1 (ENSPLAG00000002889) #22	abitram (ENSPLAG00000002904) #23	sla1a (ENSPLAG00000002913)	ccn4a (ENSPLAG00000002925)	ndrg1a (ENSPLAG00000002936)	ctnnb2 (ENSPLAG00000002953)	dync1li1 (ENSPLAG00000002961)	ENSPLAG00000002976	mrpl3 (ENSPLAG00000002981)	cspg5b (ENSPLAG00000002988)	ENSPLAG00000003001	ASTE1 (ENSPLAG00000003048)	klhl7 (ENSPLAG00000003075)	ENSPLAG00000003084	hycc1 (ENSPLAG00000003108)	TOMM7 (ENSPLAG00000003116)
Guppy	MODERN SPECIES	441	AHDC1 (ENSPREG00000004999)	wasf2 (ENSPREG00000004977)	gpr3 (ENSPREG00000004960)	ENSPREG00000004949	sytl1 (ENSPREG00000004917)	ENSPREG00000004820	rbm48 (ENSPREG00000004778)	pex1 (ENSPREG00000004750)	elmo1 (ENSPREG00000004642)	rp9 (ENSPREG00000004608)	si:dkey-184p18.2 (ENSPREG00000004553)	poc1bl (ENSPREG00000004517)	GALNT12 (ENSPREG00000004498)	gabbr2 (ENSPREG00000004442)	elp2 (ENSPREG00000004409)	ctnnal1 (ENSPREG00000004309) #22	abitram (ENSPREG00000004268) #23	sla1a (ENSPREG00000004250)	ccn4a (ENSPREG00000004221)	ndrg1a (ENSPREG00000004159)	ENSPREG00000004132	ENSPREG00000004080	dync1li1 (ENSPREG00000004046)	CPNE4 (ENSPREG00000003981)	mrpl3 (ENSPREG00000003943)	cspg5b (ENSPREG00000003925)	ENSPREG00000003846	ASTE1 (ENSPREG00000003773)	klhl7 (ENSPREG00000003728)	ENSPREG00000003715	hycc1 (ENSPREG00000003706)
Platyfish	MODERN SPECIES	4	AHDC1 (ENSXMAG00000029670)	ENSXMAG00000002889	wasf2 (ENSXMAG00000002885)	gpr3 (ENSXMAG00000020329)	sytl1 (ENSXMAG00000002876)	rbm48 (ENSXMAG00000002869)	ENSXMAG00000002872	pex1 (ENSXMAG00000002844)	elmo1 (ENSXMAG00000002809)	rp9 (ENSXMAG00000023881)	si:dkey-184p18.2 (ENSXMAG00000002797)	poc1bl (ENSXMAG00000002784)	GALNT12 (ENSXMAG00000002771)	gabbr2 (ENSXMAG00000002752)	elp2 (ENSXMAG00000002741)	ctnnal1 (ENSXMAG00000002715) #22	abitram (ENSXMAG00000024830) #23	sla1a (ENSXMAG00000022907)	ccn4a (ENSXMAG00000002693)	ndrg1a (ENSXMAG00000027379)	ENSXMAG00000002650	dync1li1 (ENSXMAG00000002630)	CPNE4 (ENSXMAG00000002607)	mrpl3 (ENSXMAG00000002586)	cspg5b (ENSXMAG00000026921)	ENSXMAG00000023421	ENSXMAG00000027267	ENSXMAG00000023807	ENSXMAG00000004690	ENSXMAG00000004808	klhl7 (ENSXMAG00000004816)
NAME_4	ANCESTRAL SPECIES	10	ENSGT00940000157554	ENSGT00390000018883	ENSGT00950000182962.b.a	ENSGT01060000248564.b.a.a.a	ENSGT00940000160932	ENSGT00940000159968	ENSGT00390000004541	ENSGT00550000075032	ENSGT00940000155994	ENSGT00940000162490	ENSGT00390000013383	ENSGT00940000163607	ENSGT00940000157173	ENSGT00940000155783	ENSGT00390000000916	ENSGT01030000234543.F #22	ENSGT00450000040303 #23	ENSGT00940000159104.c	ENSGT00940000158587.c.b	ENSGT00950000182872.f.a.b.p	ENSGT00910000145033	ENSGT00940000155471.c	ENSGT00390000008295.b	ENSGT00940000155519.qb.b.f	ENSGT00390000011422	ENSGT00440000034270.a.a	ENSGT00940000164286.j.b.a.a.a.k.d	ENSGT00940000164286.j.b.a.a.a.k.c	ENSGT00940000156347	ENSGT00390000010145.c.b	ENSGT00940000155602.r.b
Mummichog	MODERN SPECIES	2415											si:dkey-184p18.2 (ENSFHEG00000023425)	poc1bl (ENSFHEG00000023426)	GALNT12 (ENSFHEG00000023427)	gabbr2 (ENSFHEG00000023429)	elp2 (ENSFHEG00000023430)	ctnnal1 (ENSFHEG00000023432) #22	abitram (ENSFHEG00000023435) #23	sla1a (ENSFHEG00000023437)	ccn4a (ENSFHEG00000023438)	ndrg1a (ENSFHEG00000023439)	ENSFHEG00000023441	ENSFHEG00000023442	dync1li1 (ENSFHEG00000023444)	ENSFHEG00000023447	mrpl3 (ENSFHEG00000023451)	cspg5b (ENSFHEG00000023454)	ENSFHEG00000023456	ENSFHEG00000023457	ENSFHEG00000023458	ENSFHEG00000023459	klhl7 (ENSFHEG00000023460)
Sheepshead minnow	MODERN SPECIES	183	ENSCVAG00000006898	wasf2 (ENSCVAG00000006891)	gpr3 (ENSCVAG00000006879)	sytl1 (ENSCVAG00000006868)	efcab1 (ENSCVAG00000006841)	rbm48 (ENSCVAG00000006833)	pex1 (ENSCVAG00000006823)	elmo1 (ENSCVAG00000006800)	rp9 (ENSCVAG00000006669)	si:dkey-184p18.2 (ENSCVAG00000006632)	poc1bl (ENSCVAG00000006624)	GALNT12 (ENSCVAG00000006598)	gabbr2 (ENSCVAG00000006566)	ENSCVAG00000006487	elp2 (ENSCVAG00000006474)	ctnnal1 (ENSCVAG00000006401) #22	abitram (ENSCVAG00000006387) #23
Oryzias	ANCESTRAL SPECIES	22	ENSGT00940000154996.a.a.b	ENSGT00390000017503	ENSGT00940000158438.m	ENSGT01030000234534.B.a.a.b	ENSGT00940000161408	ENSGT00950000183051.a.a.a	ENSGT00940000155549.a.a.b	ENSGT00940000157893	ENSGT00940000155994	ENSGT00940000162490	ENSGT00390000013383	ENSGT00940000163607	ENSGT00940000157173	ENSGT00940000155783	ENSGT00390000000916	ENSGT01030000234543.F #22	ENSGT00450000040303 #23	ENSGT00940000159104.c	ENSGT00940000158587.c.b	ENSGT00950000182872.f.a.b.p	ENSGT00910000145033	ENSGT00940000155471.c	ENSGT00390000008295.b	ENSGT00940000155519.qb.b.f	ENSGT00390000011422	ENSGT00440000034270.a.a	ENSGT00940000156347	ENSGT00390000010145.c.b	ENSGT00940000155602.r.b	ENSGT00800000125328	ENSGT00390000011295.b
Oryzias_b	ANCESTRAL SPECIES	22	ENSGT00940000154996.a.a.b	ENSGT00390000017503	ENSGT00940000158438.m	ENSGT01030000234534.B.a.a.b	ENSGT00940000161408	ENSGT00950000183051.a.a.a	ENSGT00940000155549.a.a.b	ENSGT00940000157893	ENSGT00940000155994	ENSGT00940000162490	ENSGT00390000013383	ENSGT00940000163607	ENSGT00940000157173	ENSGT00940000155783	ENSGT00390000000916	ENSGT01030000234543.F #22	ENSGT00450000040303 #23	ENSGT00940000159104.c	ENSGT00940000158587.c.b	ENSGT00950000182872.f.a.b.p	ENSGT00910000145033	ENSGT00940000155471.c	ENSGT00390000008295.b	ENSGT00940000155519.qb.b.f	ENSGT00390000011422	ENSGT00440000034270.a.a	ENSGT00940000156347	ENSGT00390000010145.c.b	ENSGT00940000155602.r.b	ENSGT00390000011295.b	ENSGT00390000014833
Indian medaka	MODERN SPECIES	3	vps72a (ENSOMEG00000014002)	SYNGAP1 (ENSOMEG00000014068)	ENSOMEG00000014090	znf516 (ENSOMEG00000014103)	tshz1 (ENSOMEG00000014146)	CSMD3 (ENSOMEG00000000942)	trps1 (ENSOMEG00000014343)	ENSOMEG00000014354	elmo1 (ENSOMEG00000014438)	rp9 (ENSOMEG00000014485)	si:dkey-184p18.2 (ENSOMEG00000014504)	poc1bl (ENSOMEG00000014547)	GALNT12 (ENSOMEG00000014573)	gabbr2 (ENSOMEG00000014632)	elp2 (ENSOMEG00000014718)	ctnnal1 (ENSOMEG00000000371) #22	abitram (ENSOMEG00000014812) #23	sla1a (ENSOMEG00000014832)	ccn4a (ENSOMEG00000014866)	ndrg1a (ENSOMEG00000014944)	ENSOMEG00000014963	ctnnb2 (ENSOMEG00000015067)	dync1li1 (ENSOMEG00000015130)	ENSOMEG00000015182	mrpl3 (ENSOMEG00000015235)	ENSOMEG00000015268	ENSOMEG00000015307	ENSOMEG00000015336	klhl7 (ENSOMEG00000015386)	hycc1 (ENSOMEG00000015438)	TOMM7 (ENSOMEG00000015463)
Javanese ricefish	MODERN SPECIES	2	SYNGAP1 (ENSOJAG00000021762)	ENSOJAG00000021754	znf516 (ENSOJAG00000021746)	tshz1 (ENSOJAG00000021736)	CSMD3 (ENSOJAG00000020226)	ENSOJAG00000019972	ENSOJAG00000019946	trps1 (ENSOJAG00000019935)	elmo1 (ENSOJAG00000019568)	rp9 (ENSOJAG00000019487)	si:dkey-184p18.2 (ENSOJAG00000019477)	poc1bl (ENSOJAG00000019375)	GALNT12 (ENSOJAG00000019283)	gabbr2 (ENSOJAG00000019179)	elp2 (ENSOJAG00000018476)	ctnnal1 (ENSOJAG00000018095) #22	abitram (ENSOJAG00000018060) #23	sla1a (ENSOJAG00000018042)	ccn4a (ENSOJAG00000018038)	ndrg1a (ENSOJAG00000017861)	ENSOJAG00000017845	ENSOJAG00000016595	dync1li1 (ENSOJAG00000016482)	ENSOJAG00000016322	mrpl3 (ENSOJAG00000016025)	cspg5b (ENSOJAG00000015990)	ENSOJAG00000015631	ENSOJAG00000015598	klhl7 (ENSOJAG00000015576)	hycc1 (ENSOJAG00000015193)	TOMM7 (ENSOJAG00000015169)
Oryzias_a	ANCESTRAL SPECIES	30	ENSGT00940000154996.a.a.b	ENSGT00390000017503	ENSGT00940000158438.m	ENSGT01030000234534.B.a.a.b	ENSGT00940000161408	ENSGT00950000183051.a.a.a	ENSGT00940000155549.a.a.b	ENSGT00940000157893	ENSGT00940000155994	ENSGT00940000162490	ENSGT00390000013383	ENSGT00940000163607	ENSGT00940000157173	ENSGT00940000155783	ENSGT00390000000916	ENSGT01030000234543.F #22	ENSGT00450000040303 #23	ENSGT00940000159104.c	ENSGT00940000158587.c.b	ENSGT00950000182872.f.a.b.p	ENSGT00910000145033	ENSGT00940000155471.c	ENSGT00390000008295.b	ENSGT00940000155519.qb.b.f	ENSGT00390000011422	ENSGT00440000034270.a.a	ENSGT00940000156347	ENSGT00390000010145.c.b	ENSGT00940000155602.r.b	ENSGT00800000125328	ENSGT00390000011295.b
Japanese Medaka HdrR	MODERN SPECIES	2	ENSORLG00000003213	znf516 (ENSORLG00000023821)	ENSORLG00000003228	CSMD3 (ENSORLG00000003251)	trps1 (ENSORLG00000003272)	ENSORLG00000023853	elmo1 (ENSORLG00000003371)	rp9 (ENSORLG00000003381)	si:dkey-184p18.2 (ENSORLG00000026365)	poc1bl (ENSORLG00000003394)	GALNT12 (ENSORLG00000003408)	gabbr2 (ENSORLG00000003422)	elp2 (ENSORLG00000003446)	ENSORLG00000025712	ENSORLG00000022828	ctnnal1 (ENSORLG00000003458) #22	abitram (ENSORLG00000003464) #23	ccn4a (ENSORLG00000003512)	sla1a (ENSORLG00000003484)	ndrg1a (ENSORLG00000003558)	ENSORLG00000028703	ENSORLG00000003634	dync1li1 (ENSORLG00000003665)	ENSORLG00000003708	mrpl3 (ENSORLG00000003736)	ENSORLG00000003742	ENSORLG00000003759	ENSORLG00000003774	klhl7 (ENSORLG00000003839)	ENSORLG00000025536	hycc1 (ENSORLG00000003881)
Chinese medaka	MODERN SPECIES	884									trps1 (ENSOSIG00000021407)	elmo1 (ENSOSIG00000021458)	rp9 (ENSOSIG00000022664)	ENSOSIG00000022668	GALNT12 (ENSOSIG00000022695)	gabbr2 (ENSOSIG00000022722)	elp2 (ENSOSIG00000022755)	ctnnal1 (ENSOSIG00000022771) #22	abitram (ENSOSIG00000022773) #23	sla1a (ENSOSIG00000022776)	ccn4a (ENSOSIG00000022780)	ndrg1a (ENSOSIG00000022840)	ENSOSIG00000023029	ENSOSIG00000023056	dync1li1 (ENSOSIG00000023137)	ENSOSIG00000023254	mrpl3 (ENSOSIG00000023309)	cspg5b (ENSOSIG00000023370)	ENSOSIG00000023381	ENSOSIG00000023385	klhl7 (ENSOSIG00000023403)	hycc1 (ENSOSIG00000023420)	TOMM7 (ENSOSIG00000023424)
Ovalentaria_B	ANCESTRAL SPECIES	15	ENSGT00950000182962.b.a	ENSGT01060000248564.b.a.a.a	ENSGT00940000177340	ENSGT00940000160932	ENSGT00940000159968	ENSGT00390000004541	ENSGT00940000165470	ENSGT00550000075032	ENSGT00940000155994	ENSGT00940000162490	ENSGT00390000013383	ENSGT00940000163607	ENSGT00940000157173	ENSGT00940000155783	ENSGT00390000000916	ENSGT01030000234543.F #22	ENSGT00450000040303 #23	ENSGT00940000159104.c	ENSGT00940000158587.c.b	ENSGT00950000182872.f.a.b.p	ENSGT00910000145033	ENSGT00940000155471.c	ENSGT00390000008295.b	ENSGT00940000155519.qb.b.f	ENSGT00390000011422	ENSGT00440000034270.a.a	ENSGT00940000156347	ENSGT00390000010145.c.b	ENSGT00940000155602.r.b	ENSGT00800000125328	ENSGT00940000155602.r.a.b
Pomacentridae	ANCESTRAL SPECIES	7	ENSGT00940000157554	ENSGT00390000018883	ENSGT00950000182962.b.a	ENSGT01060000248564.b.a.a.a	ENSGT00940000160932	ENSGT00940000159968	ENSGT00390000004541	ENSGT00550000075032	ENSGT00940000155994	ENSGT00940000162490	ENSGT00390000013383	ENSGT00940000163607	ENSGT00940000157173	ENSGT00940000155783	ENSGT00390000000916	ENSGT01030000234543.F #22	ENSGT00450000040303 #23	ENSGT00940000159104.c	ENSGT00940000158587.c.b	ENSGT00950000182872.f.a.b.p	ENSGT00910000145033	ENSGT00940000155471.c	ENSGT00390000008295.b	ENSGT00940000155519.qb.b.f	ENSGT00390000011422	ENSGT00440000034270.a.a	ENSGT00940000156347	ENSGT00390000010145.c.b	ENSGT00940000155602.r.a.a	ENSGT00940000155602.r.a.b	ENSGT00390000011295.b
Pomacentridae_A	ANCESTRAL SPECIES	6	ENSGT00940000157554	ENSGT00390000018883	ENSGT00950000182962.b.a	ENSGT01060000248564.b.a.a.a	ENSGT00940000160932	ENSGT00940000159968	ENSGT00390000004541	ENSGT00550000075032	ENSGT00940000155994	ENSGT00940000162490	ENSGT00390000013383	ENSGT00940000163607	ENSGT00940000157173	ENSGT00940000155783	ENSGT00390000000916	ENSGT01030000234543.F #22	ENSGT00450000040303 #23	ENSGT00940000159104.c	ENSGT00940000158587.c.b	ENSGT00950000182872.f.a.b.p	ENSGT00910000145033.bb	ENSGT00910000145033.cb	ENSGT00940000155471.c	ENSGT00390000008295.b	ENSGT00940000155519.qb.b.f	ENSGT00390000011422	ENSGT00440000034270.a.a	ENSGT00940000156347	ENSGT00390000010145.c.b	ENSGT00940000155602.r.a.a	ENSGT00940000155602.r.a.b
Spiny chromis	DUPLICATION
Spiny chromis	DUPLICATION
Spiny chromis	MODERN SPECIES	3689																ENSAPOG00000021647 #22
Spiny chromis	MODERN SPECIES	3688																ENSAPOG00000021667 #22
Spiny chromis	MODERN SPECIES	507																ctnnal1 (ENSAPOG00000005776) #22	abitram (ENSAPOG00000000145) #23	sla1a (ENSAPOG00000005877)	ccn4a (ENSAPOG00000005930)	ndrg1a (ENSAPOG00000005963)	ENSAPOG00000005990	ENSAPOG00000006060	dync1li1 (ENSAPOG00000000160)	ENSAPOG00000006137	mrpl3 (ENSAPOG00000006179)	cspg5b (ENSAPOG00000006208)	ENSAPOG00000006300	ASTE1 (ENSAPOG00000006320)	klhl7 (ENSAPOG00000000841)	klhl7 (ENSAPOG00000006460)	ENSAPOG00000006480
Amphiprion	ANCESTRAL SPECIES	16	ENSGT00940000157554	ENSGT00390000018883	ENSGT00950000182962.b.a	ENSGT01060000248564.b.a.a.a	ENSGT00940000160932	ENSGT00940000159968	ENSGT00390000004541	ENSGT00550000075032	ENSGT00940000155994	ENSGT00940000162490	ENSGT00390000013383	ENSGT00940000163607	ENSGT00940000157173	ENSGT00940000155783	ENSGT00390000000916	ENSGT01030000234543.F #22	ENSGT00450000040303 #23	ENSGT00940000159104.c	ENSGT00940000158587.c.b	ENSGT00950000182872.f.a.b.p	ENSGT00910000145033.bb	ENSGT00910000145033.cb	ENSGT00940000155471.c	ENSGT00390000008295.b	ENSGT00940000155519.qb.b.f	ENSGT00390000011422	ENSGT00440000034270.a.a	ENSGT00940000156347	ENSGT00390000010145.c.b	ENSGT00940000155602.r.a.a	ENSGT00940000155602.r.a.b.c
Clown anemonefish	MODERN SPECIES	2961															elp2 (ENSAOCG00000005297)	ctnnal1 (ENSAOCG00000000225) #22	abitram (ENSAOCG00000005224) #23	sla1a (ENSAOCG00000005205)
Orange clownfish	MODERN SPECIES	8	ENSAPEG00000014957	wasf2 (ENSAPEG00000014969)	gpr3 (ENSAPEG00000014986)	ENSAPEG00000015000	efcab1 (ENSAPEG00000015021)	rbm48 (ENSAPEG00000015063)	pex1 (ENSAPEG00000015081)	elmo1 (ENSAPEG00000015109)	ENSAPEG00000015134	rp9 (ENSAPEG00000015143)	si:dkey-184p18.2 (ENSAPEG00000015169)	poc1bl (ENSAPEG00000015193)	GALNT12 (ENSAPEG00000015222)	gabbr2 (ENSAPEG00000015305)	elp2 (ENSAPEG00000015373)	ctnnal1 (ENSAPEG00000015409) #22	abitram (ENSAPEG00000015483) #23	sla1a (ENSAPEG00000015524)	ccn4a (ENSAPEG00000015566)	ndrg1a (ENSAPEG00000015678)	ENSAPEG00000015723	ENSAPEG00000015742	ENSAPEG00000015764	dync1li1 (ENSAPEG00000015835)	CPNE4 (ENSAPEG00000015916)	mrpl3 (ENSAPEG00000015997)	cspg5b (ENSAPEG00000016071)	ENSAPEG00000016106	ENSAPEG00000016126	klhl7 (ENSAPEG00000016138)	klhl7 (ENSAPEG00000016189)
Bicolor damselfish	MODERN SPECIES	1718															elp2 (ENSSPAG00000023138)	ctnnal1 (ENSSPAG00000023142) #22	ENSSPAG00000023144	abitram (ENSSPAG00000023148) #23	sla1a (ENSSPAG00000023150)	ccn4a (ENSSPAG00000023151)	ndrg1a (ENSSPAG00000023153)
Cichlidae	ANCESTRAL SPECIES	7	ENSGT00950000182962.b.a	ENSGT01060000248564.b.a.a.a	ENSGT00940000177340	ENSGT00940000160932	ENSGT00940000159968	ENSGT00390000004541	ENSGT00940000165470	ENSGT00550000075032	ENSGT00940000155994	ENSGT00940000162490	ENSGT00390000013383	ENSGT00940000163607	ENSGT00940000157173	ENSGT00940000155783	ENSGT00390000000916	ENSGT01030000234543.F #22	ENSGT00450000040303 #23	ENSGT00940000159104.c	ENSGT00940000158587.c.b	ENSGT00950000182872.f.a.b.p	ENSGT00990000204915	ENSGT00940000155471.c	ENSGT00390000008295.b	ENSGT00940000155519.qb.b.f	ENSGT00390000011422	ENSGT00440000034270.a.a	ENSGT00940000156347	ENSGT00390000010145.c.b	ENSGT00940000155602.r.b	ENSGT00800000125328	ENSGT00390000011295.b
Pseudocrenilabrinae	ANCESTRAL SPECIES	12	ENSGT00950000182962.b.a	ENSGT01060000248564.b.a.a.a	ENSGT00940000177340	ENSGT00940000160932	ENSGT00940000159968.k	ENSGT00390000004541	ENSGT00940000165470	ENSGT00550000075032	ENSGT00940000155994	ENSGT00940000162490	ENSGT00390000013383	ENSGT00940000163607	ENSGT00940000157173	ENSGT00940000155783	ENSGT00390000000916	ENSGT01030000234543.F #22	ENSGT00450000040303 #23	ENSGT00940000159104.c	ENSGT00940000158587.c.b	ENSGT00950000182872.f.a.b.p	ENSGT00990000204915	ENSGT00940000155471.c	ENSGT00390000008295.b	ENSGT00940000155519.qb.b.f	ENSGT00390000011422	ENSGT00440000034270.a.a	ENSGT00940000156347	ENSGT00390000010145.c.b	ENSGT00940000155602.r.b	ENSGT00800000125328	ENSGT00390000011295.b
Nile tilapia	MODERN SPECIES	13	ENSONIG00000038803	wasf2 (ENSONIG00000002236)	gpr3 (ENSONIG00000020846)	ENSONIG00000038865	sytl1 (ENSONIG00000002228)	efcab1 (ENSONIG00000002223)	rbm48 (ENSONIG00000002218)	pex1 (ENSONIG00000002198)	elmo1 (ENSONIG00000002179)	rp9 (ENSONIG00000002174)	si:dkey-184p18.2 (ENSONIG00000032391)	poc1bl (ENSONIG00000002161)	GALNT12 (ENSONIG00000002153)	gabbr2 (ENSONIG00000002134)	elp2 (ENSONIG00000002123)	ctnnal1 (ENSONIG00000002117) #22	abitram (ENSONIG00000002111) #23	sla1a (ENSONIG00000002108)	ccn4a (ENSONIG00000002107)	ndrg1a (ENSONIG00000002093)	ENSONIG00000030052	ENSONIG00000002079	dync1li1 (ENSONIG00000002066)	ENSONIG00000002056	mrpl3 (ENSONIG00000002051)	cspg5b (ENSONIG00000002050)	ASTE1 (ENSONIG00000002037)	ENSONIG00000002038	klhl7 (ENSONIG00000002029)	hycc1 (ENSONIG00000002018)	TOMM7 (ENSONIG00000039040)
Pseudocrenilabrinae_A	ANCESTRAL SPECIES	9	ENSGT00950000182962.b.a	ENSGT01060000248564.b.a.a.a	ENSGT00940000177340	ENSGT00940000160932	ENSGT00940000165470	ENSGT00940000159968.k	ENSGT00390000004541	ENSGT00550000075032	ENSGT00940000155994	ENSGT00940000162490	ENSGT00390000013383	ENSGT00940000163607	ENSGT00940000157173	ENSGT00940000155783	ENSGT00390000000916	ENSGT01030000234543.F #22	ENSGT00450000040303 #23	ENSGT00940000159104.c	ENSGT00940000158587.c.b	ENSGT00950000182872.f.a.b.p	ENSGT00990000204915	ENSGT00940000155471.c	ENSGT00390000008295.b	ENSGT00940000155519.qb.b.f	ENSGT00390000011422	ENSGT00440000034270.a.a	ENSGT00940000156347	ENSGT00390000010145.c.b	ENSGT00940000155602.r.b	ENSGT00800000125328	ENSGT00390000011295.b
Haplochromini	ANCESTRAL SPECIES	5	ENSGT00390000018883	ENSGT00950000182962.b.a	ENSGT01060000248564.b.a.a.a	ENSGT00940000177340	ENSGT00940000160932	ENSGT00940000165470.c	ENSGT00390000004541.i	ENSGT00550000075032	ENSGT00940000155994	ENSGT00940000162490	ENSGT00390000013383	ENSGT00940000163607	ENSGT00940000157173	ENSGT00940000155783	ENSGT00390000000916	ENSGT01030000234543.F #22	ENSGT00450000040303 #23	ENSGT00940000159104.c	ENSGT00940000158587.c.b	ENSGT00950000182872.f.a.b.p	ENSGT00990000204915	ENSGT00940000155471.c	ENSGT00390000008295.b	ENSGT00940000155519.qb.b.f	ENSGT00390000011422	ENSGT00440000034270.a.a	ENSGT00940000156347	ENSGT00390000010145.c.b	ENSGT00940000155602.r.b	ENSGT00800000125328	ENSGT00390000011295.b
Burton s mouthbrooder	MODERN SPECIES	420	ENSHBUG00000018932	wasf2 (ENSHBUG00000018965)	gpr3 (ENSHBUG00000018989)	ENSHBUG00000018995	ENSHBUG00000019006	ENSHBUG00000019017	rbm48 (ENSHBUG00000019023)	pex1 (ENSHBUG00000019037)	elmo1 (ENSHBUG00000000569)	rp9 (ENSHBUG00000019272)	si:dkey-184p18.2 (ENSHBUG00000019280)	poc1bl (ENSHBUG00000019319)	GALNT12 (ENSHBUG00000019369)	gabbr2 (ENSHBUG00000019409)	elp2 (ENSHBUG00000019419)	ctnnal1 (ENSHBUG00000019506) #22	abitram (ENSHBUG00000019570) #23	sla1a (ENSHBUG00000019586)	ccn4a (ENSHBUG00000019611)	ndrg1a (ENSHBUG00000019663)	ENSHBUG00000019688	ENSHBUG00000000591	dync1li1 (ENSHBUG00000019876)	ENSHBUG00000019921	mrpl3 (ENSHBUG00000019966)	cspg5b (ENSHBUG00000019986)	ENSHBUG00000020001	ENSHBUG00000020015	klhl7 (ENSHBUG00000020090)	ENSHBUG00000020104	hycc1 (ENSHBUG00000020160)
Haplochromini_A	ANCESTRAL SPECIES	5	ENSGT00390000018883	ENSGT00950000182962.b.a	ENSGT01060000248564.b.a.a.a	ENSGT00940000177340	ENSGT00940000160932	ENSGT00940000165470.c	ENSGT00390000004541.i	ENSGT00550000075032	ENSGT00940000155994	ENSGT00940000162490	ENSGT00390000013383	ENSGT00940000163607	ENSGT00940000157173	ENSGT00940000155783	ENSGT00390000000916	ENSGT01030000234543.F #22	ENSGT00450000040303 #23	ENSGT00940000159104.c	ENSGT00940000158587.c.b	ENSGT00950000182872.f.a.b.p	ENSGT00990000204915	ENSGT00940000155471.c	ENSGT00390000008295.b	ENSGT00940000155519.qb.b.f	ENSGT00390000011422	ENSGT00440000034270.a.a	ENSGT00940000156347	ENSGT00390000010145.c.b	ENSGT00940000155602.r.b	ENSGT00800000125328	ENSGT00390000011295.b
P. nyererei	MODERN SPECIES	323	AHDC1 (ENSPNYG00000009375)	wasf2 (ENSPNYG00000009358)	gpr3 (ENSPNYG00000009348)	ENSPNYG00000009332	sytl1 (ENSPNYG00000009297)	ENSPNYG00000009244	rbm48 (ENSPNYG00000009226)	pex1 (ENSPNYG00000009123)	elmo1 (ENSPNYG00000009038)	rp9 (ENSPNYG00000009006)	ENSPNYG00000008984	poc1bl (ENSPNYG00000008921)	GALNT12 (ENSPNYG00000008883)	gabbr2 (ENSPNYG00000008853)	elp2 (ENSPNYG00000008757)	ctnnal1 (ENSPNYG00000008694) #22	abitram (ENSPNYG00000008660) #23	sla1a (ENSPNYG00000008625)	ccn4a (ENSPNYG00000008606)	ndrg1a (ENSPNYG00000008556)	ENSPNYG00000008537	ENSPNYG00000008517	ENSPNYG00000008468	dync1li1 (ENSPNYG00000008425)	ENSPNYG00000008407	ENSPNYG00000008401	mrpl3 (ENSPNYG00000008358)	cspg5b (ENSPNYG00000008337)	ENSPNYG00000008308	ENSPNYG00000008288	klhl7 (ENSPNYG00000008261)
Haplochromini_B	ANCESTRAL SPECIES	1	ENSGT01060000248564.b.a.a.a	ENSGT00940000177340	ENSGT00940000155843	ENSGT01030000234954	ENSGT00960000186804	ENSGT00940000165470.c	ENSGT00390000004541.i	ENSGT00550000075032	ENSGT00940000155994	ENSGT00940000162490	ENSGT00390000013383	ENSGT00940000163607	ENSGT00940000157173	ENSGT00940000155783	ENSGT00390000000916	ENSGT01030000234543.F #22	ENSGT00450000040303 #23	ENSGT00940000159104.c	ENSGT00940000158587.c.b	ENSGT00950000182872.f.a.b.p	ENSGT00990000204915	ENSGT00940000155471.c	ENSGT00390000008295.b	ENSGT00940000155519.qb.b.f	ENSGT00390000011422	ENSGT00440000034270.a.a	ENSGT00940000156347	ENSGT00390000010145.c.b	ENSGT00940000155602.r.b	ENSGT00800000125328	ENSGT00390000011295.b
Eastern happy	MODERN SPECIES	13	ENSACLG00000019695	wasf2 (ENSACLG00000019704)	gpr3 (ENSACLG00000019717)	ENSACLG00000019748	ENSACLG00000019764	rbm48 (ENSACLG00000019775)	ENSACLG00000019790	pex1 (ENSACLG00000019864)	elmo1 (ENSACLG00000019940)	rp9 (ENSACLG00000020012)	si:dkey-184p18.2 (ENSACLG00000020040)	poc1bl (ENSACLG00000020070)	GALNT12 (ENSACLG00000020111)	gabbr2 (ENSACLG00000020171)	elp2 (ENSACLG00000020239)	ctnnal1 (ENSACLG00000020419) #22	abitram (ENSACLG00000020504) #23	sla1a (ENSACLG00000020538)	ccn4a (ENSACLG00000020546)	ndrg1a (ENSACLG00000020565)	ENSACLG00000020678	ENSACLG00000020693	ENSACLG00000020715	dync1li1 (ENSACLG00000020774)	ENSACLG00000020817	mrpl3 (ENSACLG00000020843)	cspg5b (ENSACLG00000020887)	ENSACLG00000020926	ENSACLG00000020937	ENSACLG00000020991	klhl7 (ENSACLG00000021011)
Zebra mbuna	MODERN SPECIES	1104	ENSMZEG00005006079	wasf2 (ENSMZEG00005006089)	gpr3 (ENSMZEG00005006118)	ENSMZEG00005006129	ENSMZEG00005006139	ENSMZEG00005006162	rbm48 (ENSMZEG00005006153)	pex1 (ENSMZEG00005006172)	elmo1 (ENSMZEG00005006212)	rp9 (ENSMZEG00005006301)	si:dkey-184p18.2 (ENSMZEG00005006323)	poc1bl (ENSMZEG00005006343)	GALNT12 (ENSMZEG00005006369)	gabbr2 (ENSMZEG00005006407)	elp2 (ENSMZEG00005006437)	ctnnal1 (ENSMZEG00005006483) #22	abitram (ENSMZEG00005006527) #23	sla1a (ENSMZEG00005006549)	ccn4a (ENSMZEG00005006557)	ndrg1a (ENSMZEG00005006591)	ENSMZEG00005006628	ENSMZEG00005006640	dync1li1 (ENSMZEG00005006708)	ENSMZEG00005006724	mrpl3 (ENSMZEG00005006750)	cspg5b (ENSMZEG00005006782)	ENSMZEG00005006798	ENSMZEG00005006832	klhl7 (ENSMZEG00005006852)	ENSMZEG00005006881	hycc1 (ENSMZEG00005006909)
Lyretail cichlid	MODERN SPECIES	302	AHDC1 (ENSNBRG00000010575)	wasf2 (ENSNBRG00000010545)	gpr3 (ENSNBRG00000010526)	ENSNBRG00000010509	ENSNBRG00000010494	rbm48 (ENSNBRG00000010483)	efcab1 (ENSNBRG00000010436)	pex1 (ENSNBRG00000010320)	elmo1 (ENSNBRG00000010259)	rp9 (ENSNBRG00000010234)	si:dkey-184p18.2 (ENSNBRG00000010220)	poc1bl (ENSNBRG00000010176)	GALNT12 (ENSNBRG00000010145)	gabbr2 (ENSNBRG00000010104)	elp2 (ENSNBRG00000009896)	ctnnal1 (ENSNBRG00000009824) #22	abitram (ENSNBRG00000009799) #23	sla1a (ENSNBRG00000009746)	ccn4a (ENSNBRG00000009659)	ndrg1a (ENSNBRG00000009595)	ENSNBRG00000009572	ENSNBRG00000009516	dync1li1 (ENSNBRG00000009494)	CPNE4 (ENSNBRG00000009450)	mrpl3 (ENSNBRG00000009401)	cspg5b (ENSNBRG00000009379)	ENSNBRG00000009328	ASTE1 (ENSNBRG00000009292)	klhl7 (ENSNBRG00000009238)	ENSNBRG00000009223	hycc1 (ENSNBRG00000009194)
Midas cichlid	MODERN SPECIES	277														gabbr2 (ENSACIG00000016470)	elp2 (ENSACIG00000016294)	ctnnal1 (ENSACIG00000016257) #22	abitram (ENSACIG00000016240) #23	sla1a (ENSACIG00000016177)	ccn4a (ENSACIG00000016157)	ndrg1a (ENSACIG00000016127)	ENSACIG00000016109	ENSACIG00000016086	dync1li1 (ENSACIG00000016055)	ENSACIG00000016024	mrpl3 (ENSACIG00000015992)	cspg5b (ENSACIG00000015965)	ENSACIG00000015834	ASTE1 (ENSACIG00000015809)	klhl7 (ENSACIG00000015779)	hycc1 (ENSACIG00000015758)	TOMM7 (ENSACIG00000015745)
Percomorphaceae_C	ANCESTRAL SPECIES	15	ENSGT01060000248564.b.a.a.a	ENSGT00940000177340	ENSGT00940000160932	ENSGT00940000165470	ENSGT01100000263491.a.a.c.b	ENSGT00940000159968	ENSGT00390000004541	ENSGT00550000075032	ENSGT00940000155994	ENSGT00940000162490	ENSGT00390000013383	ENSGT00940000163607	ENSGT00940000157173	ENSGT00940000155783	ENSGT00390000000916	ENSGT01030000234543.F #22	ENSGT00450000040303 #23	ENSGT00940000159104.c	ENSGT00940000158587.c.b	ENSGT00950000182872.f.a.b.p	ENSGT00910000145033	ENSGT00940000155471.c	ENSGT00390000008295.b	ENSGT00940000155519.qb.b.f	ENSGT00390000011422	ENSGT00440000034270.a.a	ENSGT00940000156347	ENSGT00390000010145.c.b	ENSGT00940000155602.r.a	ENSGT00390000011295.b	ENSGT00390000014833
Eupercaria	ANCESTRAL SPECIES	11	ENSGT00940000177340	ENSGT00940000160932	ENSGT00940000165470	ENSGT00940000154446.b.b.a	ENSGT01100000263491.a.a.c.b	ENSGT00940000159968	ENSGT00390000004541	ENSGT00550000075032	ENSGT00940000155994	ENSGT00940000162490	ENSGT00390000013383	ENSGT00940000163607	ENSGT00940000157173	ENSGT00940000155783	ENSGT00390000000916	ENSGT01030000234543.F #22	ENSGT00450000040303 #23	ENSGT00940000159104.c	ENSGT00940000158587.c.b	ENSGT00950000182872.f.a.b.p	ENSGT00910000145033	ENSGT00940000155471.c	ENSGT00390000008295.b	ENSGT00940000155519.qb.b.f	ENSGT00390000011422	ENSGT00440000034270.a.a	ENSGT00940000156347	ENSGT00390000010145.c.b	ENSGT00940000155602.r.a	ENSGT00390000011295.b	ENSGT00390000014833
Tetraodontidae	ANCESTRAL SPECIES	20	ENSGT00390000018883	ENSGT00950000182962.b.a	ENSGT01060000248564.b.a.a.a	ENSGT00940000160932	ENSGT00940000165470	ENSGT00940000159968	ENSGT00390000004541	ENSGT00550000075032	ENSGT00940000155994	ENSGT00940000162490	ENSGT00390000013383	ENSGT00940000163607	ENSGT00940000157173	ENSGT00940000155783	ENSGT00390000000916	ENSGT01030000234543.F #22	ENSGT00450000040303 #23	ENSGT00940000159104.c	ENSGT00940000158587.c.b	ENSGT00950000182872.f.a.b.p	ENSGT00910000145033	ENSGT00940000155471.c	ENSGT00390000008295.b	ENSGT00940000155519.qb.b.f	ENSGT00390000011422	ENSGT00440000034270.a.a	ENSGT00940000156347	ENSGT00390000010145.c.b	ENSGT00940000155602.q	ENSGT00390000011295.b	ENSGT00390000014833
Fugu	MODERN SPECIES	3	AHDC1 (ENSTRUG00000021782)	ENSTRUG00000021499	wasf2 (ENSTRUG00000012486)	gpr3 (ENSTRUG00000030758)	sytl1 (ENSTRUG00000012408)	ENSTRUG00000012350	rbm48 (ENSTRUG00000012275)	pex1 (ENSTRUG00000012156)	elmo1 (ENSTRUG00000011805)	rp9 (ENSTRUG00000011735)	si:dkey-184p18.2 (ENSTRUG00000022571)	poc1bl (ENSTRUG00000011585)	GALNT12 (ENSTRUG00000011499)	gabbr2 (ENSTRUG00000011256)	elp2 (ENSTRUG00000011088)	ctnnal1 (ENSTRUG00000010980) #22	abitram (ENSTRUG00000024581) #23	sla1a (ENSTRUG00000024852)	ccn4a (ENSTRUG00000010677)	ndrg1a (ENSTRUG00000021082)	ENSTRUG00000032450	ENSTRUG00000019524	ENSTRUG00000010172	dync1li1 (ENSTRUG00000010004)	ENSTRUG00000009867	mrpl3 (ENSTRUG00000009650)	cspg5b (ENSTRUG00000031045)	ENSTRUG00000009434	ENSTRUG00000009355	klhl7 (ENSTRUG00000008889)	hycc1 (ENSTRUG00000008765)
Tetraodon	MODERN SPECIES	15	yrk (ENSTNIG00000016986)	ENSTNIG00000016987	wasf2 (ENSTNIG00000016988)	sytl1 (ENSTNIG00000016989)	efcab1 (ENSTNIG00000016990)	rbm48 (ENSTNIG00000016991)	pex1 (ENSTNIG00000016992)	elmo1 (ENSTNIG00000016993)	rp9 (ENSTNIG00000016994)	poc1bl (ENSTNIG00000016995)	ENSTNIG00000016996	poc1bl (ENSTNIG00000016997)	gabbr2 (ENSTNIG00000016998)	ENSTNIG00000000328	elp2 (ENSTNIG00000003144)	ctnnal1 (ENSTNIG00000003145) #22	abitram (ENSTNIG00000019799) #23	sla1a (ENSTNIG00000000633)	sla1a (ENSTNIG00000006428)	ccn4a (ENSTNIG00000006429)	ndrg1a (ENSTNIG00000006430)	ENSTNIG00000000501	ENSTNIG00000000715	ENSTNIG00000006431	dync1li1 (ENSTNIG00000006432)	ENSTNIG00000006433	mrpl3 (ENSTNIG00000006434)	cspg5b (ENSTNIG00000006435)	ENSTNIG00000002540	ENSTNIG00000002541	klhl7 (ENSTNIG00000002542)
Eupecaria_A	ANCESTRAL SPECIES	12	ENSGT00940000177340	ENSGT00940000160932	ENSGT00940000165470	ENSGT00940000154446.b.b.a	ENSGT01100000263491.a.a.c.b	ENSGT00940000159968	ENSGT00390000004541	ENSGT00550000075032	ENSGT00940000155994	ENSGT00940000162490	ENSGT00390000013383	ENSGT00940000163607	ENSGT00940000157173	ENSGT00940000155783	ENSGT00390000000916	ENSGT01030000234543.F #22	ENSGT00450000040303 #23	ENSGT00940000159104.c	ENSGT00940000158587.c.b	ENSGT00950000182872.f.a.b.p	ENSGT00910000145033	ENSGT00940000155471.c	ENSGT00390000008295.b	ENSGT00940000155519.qb.b.f	ENSGT00390000011422	ENSGT00440000034270.a.a	ENSGT00940000156347	ENSGT00390000010145.c.b	ENSGT00940000155602.r.a	ENSGT00390000011295.b	ENSGT00390000014833
Ballan wrasse	MODERN SPECIES	42	yrk (ENSLBEG00000002440)	AHDC1 (ENSLBEG00000002387)	wasf2 (ENSLBEG00000002344)	gpr3 (ENSLBEG00000002311)	ENSLBEG00000002304	sytl1 (ENSLBEG00000001503)	efcab1 (ENSLBEG00000001376)	rbm48 (ENSLBEG00000001370)	pex1 (ENSLBEG00000001358)	elmo1 (ENSLBEG00000001249)	rp9 (ENSLBEG00000001181)	poc1bl (ENSLBEG00000001092)	GALNT12 (ENSLBEG00000001029)	gabbr2 (ENSLBEG00000000938)	elp2 (ENSLBEG00000000916)	ctnnal1 (ENSLBEG00000000862) #22	abitram (ENSLBEG00000000835) #23	sla1a (ENSLBEG00000000824)	ccn4a (ENSLBEG00000000784)	ndrg1a (ENSLBEG00000000725)	ENSLBEG00000000707	ENSLBEG00000000699	ENSLBEG00000000654	dync1li1 (ENSLBEG00000000604)	CPNE4 (ENSLBEG00000000520)	mrpl3 (ENSLBEG00000000445)	ENSLBEG00000000419	ENSLBEG00000000321	ENSLBEG00000000311	ENSLBEG00000000298	klhl7 (ENSLBEG00000000261)
Eupecaria_B	ANCESTRAL SPECIES	12	ENSGT00950000183168.B.a	ENSGT00950000182962.b.a	ENSGT01060000248564.b.a.a.a	ENSGT00940000160932	ENSGT01100000263491.a.a.c.b	ENSGT00940000159968	ENSGT00390000004541	ENSGT00550000075032	ENSGT00940000155994	ENSGT00940000162490	ENSGT00390000013383	ENSGT00940000163607	ENSGT00940000157173	ENSGT00940000155783	ENSGT00390000000916	ENSGT01030000234543.F #22	ENSGT00450000040303 #23	ENSGT00940000159104.c	ENSGT00940000158587.c.b	ENSGT00950000182872.f.a.b.p	ENSGT00910000145033	ENSGT00940000155471.c	ENSGT00390000008295.b	ENSGT00940000155519.qb.b.f	ENSGT00390000011422	ENSGT00440000034270.a.a	ENSGT00940000156347	ENSGT00390000010145.c.b	ENSGT00940000155602.r.a	ENSGT00390000011295.b	ENSGT00390000014833
Eupecaria_C	ANCESTRAL SPECIES	13	ENSGT00950000183168.B.a	ENSGT00950000182962.b.a	ENSGT01060000248564.b.a.a.a	ENSGT00940000160932	ENSGT01100000263491.a.a.c.b	ENSGT00940000159968	ENSGT00390000004541	ENSGT00550000075032	ENSGT00940000155994	ENSGT00940000162490	ENSGT00390000013383	ENSGT00940000163607	ENSGT00940000157173	ENSGT00940000155783	ENSGT00390000000916	ENSGT01030000234543.F #22	ENSGT00450000040303 #23	ENSGT00940000159104.c	ENSGT00940000158587.c.b	ENSGT00950000182872.f.a.b.p	ENSGT00910000145033	ENSGT00940000155471.c	ENSGT00390000008295.b	ENSGT00940000155519.qb.b.f	ENSGT00390000011422	ENSGT00440000034270.a.a	ENSGT00940000156347	ENSGT00390000010145.c.b	ENSGT00940000155602.r.a	ENSGT00390000011295.b	ENSGT00390000014833
Gilthead seabream	MODERN SPECIES	17	ENSSAUG00010005582	wasf2 (ENSSAUG00010005587)	gpr3 (ENSSAUG00010005593)	ENSSAUG00010005595	ENSSAUG00010005600	efcab1 (ENSSAUG00010005611)	rbm48 (ENSSAUG00010005614)	pex1 (ENSSAUG00010005631)	elmo1 (ENSSAUG00010005665)	rp9 (ENSSAUG00010006407)	si:dkey-184p18.2 (ENSSAUG00010006408)	poc1bl (ENSSAUG00010006414)	GALNT12 (ENSSAUG00010006578)	gabbr2 (ENSSAUG00010006621)	elp2 (ENSSAUG00010006697)	ctnnal1 (ENSSAUG00010006709) #22	abitram (ENSSAUG00010006738) #23	bag6l (ENSSAUG00010006742)	ENSSAUG00010006746	atat1 (ENSSAUG00010006747)	tnfa (ENSSAUG00010006750)	GABBR1 (ENSSAUG00010006793)	ENSSAUG00010010089	SH3BP5L (ENSSAUG00010010092)	gtf2h4 (ENSSAUG00010010098)	polr1h (ENSSAUG00010010114)	mgat1b (ENSSAUG00010010116)	vars2 (ENSSAUG00010010133)	ppp1r11 (ENSSAUG00010011169)	ENSSAUG00010011171	sacm1la (ENSSAUG00010011190)
Eupercaria_incertae_sedis	ANCESTRAL SPECIES	10	ENSGT00950000183168.B.a	ENSGT00950000182962.b.a	ENSGT01060000248564.b.a.a.a	ENSGT00940000160932	ENSGT01100000263491.a.a.c.b	ENSGT00940000159968	ENSGT00390000004541	ENSGT00550000075032	ENSGT00940000155994	ENSGT00940000162490	ENSGT00390000013383	ENSGT00940000163607	ENSGT00940000157173	ENSGT00940000155783	ENSGT00390000000916	ENSGT01030000234543.F #22	ENSGT00450000040303 #23	ENSGT00940000159104.c	ENSGT00940000158587.c.b	ENSGT00950000182872.f.a.b.p	ENSGT00910000145033	ENSGT00940000155471.c	ENSGT00390000008295.b	ENSGT00940000155519.qb.b.f	ENSGT00390000011422	ENSGT00440000034270.a.a	ENSGT00940000156347	ENSGT00390000010145.c.b	ENSGT00940000155602.r.a	ENSGT00390000011295.b	ENSGT00390000014833
European seabass	MODERN SPECIES	22	AHDC1 (ENSDLAG00005029529)	gpr3 (ENSDLAG00005027580)	wasf2 (ENSDLAG00005029787)	ENSDLAG00005023161	ENSDLAG00005033799	ENSDLAG00005023130	ENSDLAG00005023123	pex1 (ENSDLAG00005022992)	elmo1 (ENSDLAG00005022494)	si:dkey-184p18.2 (ENSDLAG00005022461)	poc1bl (ENSDLAG00005022406)	ENSDLAG00005022361	gabbr2 (ENSDLAG00005022337)	elp2 (ENSDLAG00005022305)	ENSDLAG00005026480 #23	ENSDLAG00005022098 #22	sla1a (ENSDLAG00005022077)	ENSDLAG00005022071	ndrg1a (ENSDLAG00005021312)	ENSDLAG00005034531	ENSDLAG00005021255	ENSDLAG00005021068	dync1li1 (ENSDLAG00005019897)	ENSDLAG00005020617	mrpl3 (ENSDLAG00005020321)	cspg5b (ENSDLAG00005019838)	ENSDLAG00005019497	ENSDLAG00005019475	KLHL7 (ENSDLAG00005019384)	HYCC1 (ENSDLAG00005019372)	TOMM7 (ENSDLAG00005019365)
Large yellow croaker	MODERN SPECIES	484	ENSLCRG00005007783	ENSLCRG00005007780	wasf2 (ENSLCRG00005007773)	gpr3 (ENSLCRG00005007770)	sytl1 (ENSLCRG00005007769)	efcab1 (ENSLCRG00005007765)	rbm48 (ENSLCRG00005007757)	pex1 (ENSLCRG00005006972)	elmo1 (ENSLCRG00005005097)	rp9 (ENSLCRG00005004959)	si:dkey-184p18.2 (ENSLCRG00005004946)	poc1bl (ENSLCRG00005004871)	ENSLCRG00005004712	gabbr2 (ENSLCRG00005004514)	elp2 (ENSLCRG00005004051)	ctnnal1 (ENSLCRG00005003761) #22	abitram (ENSLCRG00005003736) #23	sla1a (ENSLCRG00005003734)	ccn4a (ENSLCRG00005003731)	ndrg1a (ENSLCRG00005003194)	ENSLCRG00005003035	ENSLCRG00005003031	ENSLCRG00005011223	dync1li1 (ENSLCRG00005011149)	ENSLCRG00005011035	mrpl3 (ENSLCRG00005010608)	cspg5b (ENSLCRG00005010599)	ENSLCRG00005010426	ASTE1 (ENSLCRG00005010417)	klhl7 (ENSLCRG00005010410)	hycc1 (ENSLCRG00005010385)
Perciformes	ANCESTRAL SPECIES	11	ENSGT00950000182962.b.a	ENSGT01060000248564.b.a.a.a	ENSGT00940000160932	ENSGT00940000154446.b.b.a	ENSGT01100000263491.a.a.c.b	ENSGT00940000159968	ENSGT00390000004541	ENSGT00550000075032	ENSGT00940000155994	ENSGT00940000162490	ENSGT00390000013383	ENSGT00940000163607	ENSGT00940000157173	ENSGT00940000155783	ENSGT00390000000916	ENSGT01030000234543.F #22	ENSGT00450000040303 #23	ENSGT00940000159104.c	ENSGT00940000158587.c.b	ENSGT00950000182872.f.a.b.p	ENSGT00910000145033	ENSGT00940000155471.c	ENSGT00390000008295.b	ENSGT00940000155519.qb.b.f	ENSGT00390000011422	ENSGT00440000034270.a.a	ENSGT00940000156347	ENSGT00390000010145.c.b	ENSGT00940000155602.r.a	ENSGT00390000011295.b	ENSGT00390000014833
Cottioidei	ANCESTRAL SPECIES	16	ENSGT00390000018883	ENSGT00950000182962.b.a	ENSGT01060000248564.b.a.a.a	ENSGT00940000160932	ENSGT01100000263491.a.a.c.b	ENSGT00940000159968	ENSGT00390000004541	ENSGT00550000075032	ENSGT00940000155994	ENSGT00940000162490	ENSGT00390000013383	ENSGT00940000163607	ENSGT00940000157173	ENSGT00940000155783	ENSGT00390000000916	ENSGT01030000234543.F #22	ENSGT00450000040303 #23	ENSGT00940000159104.c	ENSGT00940000158587.c.b	ENSGT00950000182872.f.a.b.p	ENSGT00910000145033	ENSGT00940000155471.c	ENSGT00390000008295.b	ENSGT00940000155519.qb.b.f	ENSGT00390000011422	ENSGT00440000034270.a.a	ENSGT00940000156347	ENSGT00390000010145.c.b	ENSGT00940000155602.r.a	ENSGT00390000011295.b	ENSGT00390000014833
Lumpfish	MODERN SPECIES	2	ENSCLMG00005020044	wasf2 (ENSCLMG00005020047)	gpr3 (ENSCLMG00005020049)	sytl1 (ENSCLMG00005020051)	ENSCLMG00005020054	efcab1 (ENSCLMG00005020057)	rbm48 (ENSCLMG00005020060)	pex1 (ENSCLMG00005020063)	elmo1 (ENSCLMG00005020094)	rp9 (ENSCLMG00005020747)	si:dkey-184p18.2 (ENSCLMG00005020749)	poc1bl (ENSCLMG00005020752)	GALNT12 (ENSCLMG00005020754)	gabbr2 (ENSCLMG00005020765)	elp2 (ENSCLMG00005020769)	ctnnal1 (ENSCLMG00005020780) #22	abitram (ENSCLMG00005020786) #23	sla1a (ENSCLMG00005020787)	ccn4a (ENSCLMG00005020788)	ndrg1a (ENSCLMG00005020809)	ENSCLMG00005021556	ENSCLMG00005021557	ENSCLMG00005021559	dync1li1 (ENSCLMG00005021745)	ENSCLMG00005021836	mrpl3 (ENSCLMG00005021843)	cspg5b (ENSCLMG00005021924)	ENSCLMG00005021936	ENSCLMG00005022198	klhl7 (ENSCLMG00005022199)	hycc1 (ENSCLMG00005022202)
Stickleback	MODERN SPECIES	9	wasf2 (ENSGACG00000005777)	gpr3 (ENSGACG00000005789)	sytl1 (ENSGACG00000005790)	efcab1 (ENSGACG00000005798)	rbm48 (ENSGACG00000005801)	pex1 (ENSGACG00000005816)	elmo1 (ENSGACG00000005835)	rp9 (ENSGACG00000005861)	si:dkey-184p18.2 (ENSGACG00000005866)	ENSGACG00000005872	poc1bl (ENSGACG00000005874)	GALNT12 (ENSGACG00000005879)	ENSGACG00000005894	gabbr2 (ENSGACG00000005895)	elp2 (ENSGACG00000005913)	ctnnal1 (ENSGACG00000005928) #22	abitram (ENSGACG00000005936) #23	sla1a (ENSGACG00000005947)	ccn4a (ENSGACG00000005961)	ndrg1a (ENSGACG00000005968)	ENSGACG00000005983	dync1li1 (ENSGACG00000005992)	ENSGACG00000005998	mrpl3 (ENSGACG00000006011)	ENSGACG00000006027	cspg5b (ENSGACG00000006031)	ENSGACG00000006036	ENSGACG00000006054	klhl7 (ENSGACG00000006062)	hycc1 (ENSGACG00000006077)	ENSGACG00000006102
Perciformes_a	ANCESTRAL SPECIES	14	ENSGT00390000018883	ENSGT00390000002881	ENSGT00950000182962.b.a	ENSGT01060000248564.b.a.a.a	ENSGT00940000160932	ENSGT00940000159968	ENSGT00390000004541	ENSGT00550000075032	ENSGT00940000155994	ENSGT00940000162490	ENSGT00390000013383	ENSGT00940000163607	ENSGT00940000157173	ENSGT00940000155783	ENSGT00390000000916	ENSGT01030000234543.F #22	ENSGT00450000040303 #23	ENSGT00940000159104.c	ENSGT00940000158587.c.b	ENSGT00950000182872.f.a.b.p	ENSGT00910000145033	ENSGT00940000155471.c	ENSGT00390000008295.b	ENSGT00940000155519.qb.b.f	ENSGT00390000011422	ENSGT00440000034270.a.a	ENSGT00940000156347	ENSGT00390000010145.c.b	ENSGT00940000155602.r.a	ENSGT00390000011295.b	ENSGT00390000014833
Channel bull blenny	MODERN SPECIES	2	yrk (ENSCGOG00000012846)	ENSCGOG00000012829	wasf2 (ENSCGOG00000012820)	gpr3 (ENSCGOG00000012816)	ENSCGOG00000012788	efcab1 (ENSCGOG00000012784)	ENSCGOG00000012780	rbm48 (ENSCGOG00000012778)	pex1 (ENSCGOG00000012552)	elmo1 (ENSCGOG00000009313)	rp9 (ENSCGOG00000009192)	si:dkey-184p18.2 (ENSCGOG00000009189)	poc1bl (ENSCGOG00000008985)	GALNT12 (ENSCGOG00000008844)	gabbr2 (ENSCGOG00000008702)	ENSCGOG00000008698 #22	abitram (ENSCGOG00000008697) #23	sla1a (ENSCGOG00000008689)	ccn4a (ENSCGOG00000008687)	ndrg1a (ENSCGOG00000007823)	ENSCGOG00000007802	ENSCGOG00000007795	ENSCGOG00000003602	dync1li1 (ENSCGOG00000002926)	ENSCGOG00000001821	mrpl3 (ENSCGOG00000001751)	cspg5b (ENSCGOG00000001745)	ENSCGOG00000001494	ASTE1 (ENSCGOG00000001472)	klhl7 (ENSCGOG00000001378)	ENSCGOG00000001361
Pike perch	MODERN SPECIES	41	AHDC1 (ENSSLUG00000023634)	ENSSLUG00000023625	wasf2 (ENSSLUG00000023621)	gpr3 (ENSSLUG00000023613)	sytl1 (ENSSLUG00000023604)	efcab1 (ENSSLUG00000023599)	rbm48 (ENSSLUG00000023594)	pex1 (ENSSLUG00000023579)	elmo1 (ENSSLUG00000022222)	rp9 (ENSSLUG00000022125)	si:dkey-184p18.2 (ENSSLUG00000022121)	poc1bl (ENSSLUG00000022093)	GALNT12 (ENSSLUG00000022070)	gabbr2 (ENSSLUG00000022014)	elp2 (ENSSLUG00000021982)	ctnnal1 (ENSSLUG00000021939) #22	abitram (ENSSLUG00000021932) #23	sla1a (ENSSLUG00000021928)	ccn4a (ENSSLUG00000021927)	ndrg1a (ENSSLUG00000021160)	ENSSLUG00000021115	ENSSLUG00000021113	ENSSLUG00000021024	dync1li1 (ENSSLUG00000020929)	ENSSLUG00000020845	mrpl3 (ENSSLUG00000020507)	ENSSLUG00000019803	ASTE1 (ENSSLUG00000019754)	klhl7 (ENSSLUG00000019739)	hycc1 (ENSSLUG00000019681)	TOMM7 (ENSSLUG00000019672)
Percomorphaceae_D	ANCESTRAL SPECIES	14	ENSGT00950000183168.B.a	ENSGT00950000182962.b.a	ENSGT01060000248564.b.a.a.a	ENSGT00940000177340	ENSGT00940000160932	ENSGT00940000159968	ENSGT00390000004541	ENSGT00550000075032	ENSGT00940000155994	ENSGT00940000162490	ENSGT00390000013383	ENSGT00940000163607	ENSGT00940000157173	ENSGT00940000155783	ENSGT00390000000916	ENSGT01030000234543.F #22	ENSGT00450000040303 #23	ENSGT00940000159104.c	ENSGT00940000158587.c.b	ENSGT00950000182872.f.a.b.p	ENSGT00910000145033	ENSGT00940000155471.c	ENSGT00390000008295.b	ENSGT00940000155519.qb.b.f	ENSGT00390000011422	ENSGT00440000034270.a.a	ENSGT00940000156347	ENSGT00390000010145.c.b	ENSGT00940000155602.r.a	ENSGT00390000011295.b	ENSGT00390000014833
Anabantaria	ANCESTRAL SPECIES	16	ENSGT00390000018883	ENSGT00950000182962.b.a	ENSGT01060000248564.b.a.a.a	ENSGT00940000177340	ENSGT00940000160932	ENSGT00940000159968	ENSGT00390000004541	ENSGT00550000075032	ENSGT00940000155994	ENSGT00940000162490	ENSGT00390000013383	ENSGT00940000163607	ENSGT00940000157173	ENSGT00940000155783	ENSGT00390000000916	ENSGT01030000234543.F #22	ENSGT00450000040303 #23	ENSGT00940000159104.c	ENSGT00940000158587.c.b	ENSGT00950000182872.f.a.b.p	ENSGT00910000145033	ENSGT00940000155471.c	ENSGT00390000008295.b	ENSGT00940000155519.qb.b.f	ENSGT00390000011422	ENSGT00440000034270.a.a	ENSGT00940000156347	ENSGT00390000010145.c.b	ENSGT00940000155602.r.b	ENSGT00390000011295.b	ENSGT00390000014833
Anabantoidei	ANCESTRAL SPECIES	19	ENSGT00390000018883	ENSGT00950000182962.b.a	ENSGT01060000248564.b.a.a.a	ENSGT00940000177340	ENSGT00940000160932	ENSGT00940000159968	ENSGT00390000004541	ENSGT00550000075032	ENSGT00940000155994	ENSGT00940000162490	ENSGT00390000013383	ENSGT00940000163607	ENSGT00940000157173	ENSGT00940000155783	ENSGT00390000000916	ENSGT01030000234543.F #22	ENSGT00450000040303 #23	ENSGT00940000159104.c	ENSGT00940000158587.c.b	ENSGT00950000182872.f.a.b.p	ENSGT00910000145033	ENSGT00940000155471.c	ENSGT00390000008295.b	ENSGT00940000155519.qb.b.f	ENSGT00390000011422	ENSGT00440000034270.a.a	ENSGT00940000156347	ENSGT00390000010145.c.b	ENSGT00940000155602.r.b	ENSGT00390000011295.b	ENSGT00390000014833
Climbing perch	MODERN SPECIES	2	yrk (ENSATEG00000016203)	ENSATEG00000016279	wasf2 (ENSATEG00000016290)	gpr3 (ENSATEG00000016302)	ENSATEG00000016326	ENSATEG00000016350	ENSATEG00000016388	pex1 (ENSATEG00000016418)	elmo1 (ENSATEG00000016530)	rp9 (ENSATEG00000016629)	si:dkey-184p18.2 (ENSATEG00000016647)	poc1bl (ENSATEG00000016654)	ENSATEG00000016682	gabbr2 (ENSATEG00000016698)	elp2 (ENSATEG00000016754)	ENSATEG00000016793 #22	ENSATEG00000016857 #23	ENSATEG00000016915	ENSATEG00000016896	ENSATEG00000016973	ENSATEG00000016985	ENSATEG00000017014	dync1li1 (ENSATEG00000017046)	ENSATEG00000017103	mrpl3 (ENSATEG00000017145)	cspg5b (ENSATEG00000017155)	ENSATEG00000017203	ENSATEG00000017328	KLHL7 (ENSATEG00000017345)	HYCC1 (ENSATEG00000017384)	TOMM7 (ENSATEG00000025886)
Siamese fighting fish	MODERN SPECIES	2	AHDC1 (ENSBSLG00000018433)	wasf2 (ENSBSLG00000018375)	gpr3 (ENSBSLG00000018363)	ENSBSLG00000018356	sytl1 (ENSBSLG00000018316)	efcab1 (ENSBSLG00000018291)	rbm48 (ENSBSLG00000018267)	pex1 (ENSBSLG00000018122)	elmo1 (ENSBSLG00000016879)	rp9 (ENSBSLG00000015970)	si:dkey-184p18.2 (ENSBSLG00000015966)	poc1bl (ENSBSLG00000015940)	GALNT12 (ENSBSLG00000015911)	gabbr2 (ENSBSLG00000015841)	elp2 (ENSBSLG00000015758)	ctnnal1 (ENSBSLG00000015547) #22	abitram (ENSBSLG00000015532) #23	sla1a (ENSBSLG00000015515)	ccn4a (ENSBSLG00000015507)	ndrg1a (ENSBSLG00000015099)	ENSBSLG00000015088	ENSBSLG00000014745	dync1li1 (ENSBSLG00000014613)	ENSBSLG00000014308	mrpl3 (ENSBSLG00000014208)	ENSBSLG00000014150	ENSBSLG00000013682	ENSBSLG00000013659	klhl7 (ENSBSLG00000013479)	hycc1 (ENSBSLG00000013411)	TOMM7 (ENSBSLG00000013389)
Zig-zag eel	MODERN SPECIES	2	yrk (ENSMAMG00000011539)	ENSMAMG00000011526	wasf2 (ENSMAMG00000011496)	gpr3 (ENSMAMG00000011470)	ENSMAMG00000011450	ENSMAMG00000011436	ENSMAMG00000026305	pex1 (ENSMAMG00000011417)	elmo1 (ENSMAMG00000011399)	rp9 (ENSMAMG00000011389)	si:dkey-184p18.2 (ENSMAMG00000027397)	poc1bl (ENSMAMG00000011344)	ENSMAMG00000011339	gabbr2 (ENSMAMG00000011310)	elp2 (ENSMAMG00000011006)	ENSMAMG00000010897 #22	ENSMAMG00000010977 #23	ENSMAMG00000010864	ENSMAMG00000010828	ENSMAMG00000010810	ENSMAMG00000010818	ENSMAMG00000010761	dync1li1 (ENSMAMG00000010751)	ENSMAMG00000010723	mrpl3 (ENSMAMG00000010715)	cspg5b (ENSMAMG00000010676)	ENSMAMG00000010664	ENSMAMG00000010656	KLHL7 (ENSMAMG00000010632)	HYCC1 (ENSMAMG00000010602)	TOMM7 (ENSMAMG00000010590)
Carangaria	ANCESTRAL SPECIES	14	ENSGT00950000183168.B.a	ENSGT00950000182962.b.a	ENSGT01060000248564.b.a.a.a	ENSGT00940000177340	ENSGT00940000160932	ENSGT00940000159968	ENSGT00390000004541	ENSGT00550000075032	ENSGT00940000155994	ENSGT00940000162490	ENSGT00390000013383	ENSGT00940000163607	ENSGT00940000157173	ENSGT00940000155783	ENSGT00390000000916	ENSGT01030000234543.F #22	ENSGT00450000040303 #23	ENSGT00940000159104.c	ENSGT00940000158587.c.b	ENSGT00950000182872.f.a.b.p	ENSGT00910000145033	ENSGT00940000155471.c	ENSGT00390000008295.b	ENSGT00940000155519.qb.b.f	ENSGT00390000011422	ENSGT00440000034270.a.a	ENSGT00940000156347	ENSGT00390000010145.c.b	ENSGT00940000155602.r.a	ENSGT00390000011295.b	ENSGT00390000014833
Carangaria_A	ANCESTRAL SPECIES	16	ENSGT00390000018883	ENSGT00950000182962.b.a	ENSGT01060000248564.b.a.a.a	ENSGT00940000177340	ENSGT00940000160932	ENSGT00940000159968	ENSGT00390000004541	ENSGT00550000075032	ENSGT00940000155994	ENSGT00940000162490	ENSGT00390000013383	ENSGT00940000163607	ENSGT00940000157173	ENSGT00940000155783	ENSGT00390000000916	ENSGT01030000234543.F #22	ENSGT00450000040303 #23	ENSGT00940000159104.c	ENSGT00940000158587.c.b	ENSGT00950000182872.f.a.b.p	ENSGT00910000145033	ENSGT00940000155471.c	ENSGT00390000008295.b	ENSGT00940000155519.qb.b.f	ENSGT00390000011422	ENSGT00440000034270.a.a	ENSGT00940000156347	ENSGT00390000010145.c.b	ENSGT00940000155602.r.a	ENSGT00390000011295.b	ENSGT00390000014833
Seriola	ANCESTRAL SPECIES	12	ENSGT00940000157554	ENSGT00390000018883	ENSGT00950000182962.b.a	ENSGT01060000248564.b.a.a.a	ENSGT00940000160932	ENSGT00940000159968	ENSGT00390000004541	ENSGT00550000075032	ENSGT00940000155994	ENSGT00940000162490	ENSGT00390000013383	ENSGT00940000163607	ENSGT00940000157173	ENSGT00940000155783	ENSGT00390000000916	ENSGT01030000234543.F #22	ENSGT00450000040303 #23	ENSGT00940000159104.c	ENSGT00940000158587.c.b	ENSGT00950000182872.f.a.b.p	ENSGT00910000145033	ENSGT00940000155471.c	ENSGT00390000008295.b	ENSGT00940000155519.qb.b.f	ENSGT00390000011422	ENSGT00440000034270.a.a	ENSGT00940000156347	ENSGT00390000010145.c.b	ENSGT00940000155602.r.a	ENSGT00390000011295.b	ENSGT00390000014833
Greater amberjack	MODERN SPECIES	48	AHDC1 (ENSSDUG00000008843)	ENSSDUG00000008827	wasf2 (ENSSDUG00000008811)	gpr3 (ENSSDUG00000008797)	sytl1 (ENSSDUG00000008733)	efcab1 (ENSSDUG00000008664)	rbm48 (ENSSDUG00000008641)	pex1 (ENSSDUG00000008582)	elmo1 (ENSSDUG00000008440)	rp9 (ENSSDUG00000008393)	si:dkey-184p18.2 (ENSSDUG00000008371)	poc1bl (ENSSDUG00000008312)	GALNT12 (ENSSDUG00000008275)	gabbr2 (ENSSDUG00000008215)	elp2 (ENSSDUG00000008064)	ctnnal1 (ENSSDUG00000008004) #22	abitram (ENSSDUG00000007970) #23	sla1a (ENSSDUG00000007948)	ccn4a (ENSSDUG00000007930)	ndrg1a (ENSSDUG00000007887)	ENSSDUG00000007860	ENSSDUG00000007845	ENSSDUG00000007837	ENSSDUG00000007798	dync1li1 (ENSSDUG00000007704)	ENSSDUG00000007647	mrpl3 (ENSSDUG00000007598)	cspg5b (ENSSDUG00000007580)	ENSSDUG00000007484	ENSSDUG00000007451	klhl7 (ENSSDUG00000007399)
Yellowtail amberjack	MODERN SPECIES	2890	yrk (ENSSLDG00000009505)	AHDC1 (ENSSLDG00000009452)	wasf2 (ENSSLDG00000009424)	gpr3 (ENSSLDG00000009406)	sytl1 (ENSSLDG00000009367)	efcab1 (ENSSLDG00000009280)	rbm48 (ENSSLDG00000009209)	pex1 (ENSSLDG00000009178)	elmo1 (ENSSLDG00000009100)	rp9 (ENSSLDG00000009087)	si:dkey-184p18.2 (ENSSLDG00000009072)	poc1bl (ENSSLDG00000009037)	GALNT12 (ENSSLDG00000008995)	gabbr2 (ENSSLDG00000008904)	elp2 (ENSSLDG00000008775)	ctnnal1 (ENSSLDG00000008673) #22	abitram (ENSSLDG00000008634) #23	sla1a (ENSSLDG00000008598)	ccn4a (ENSSLDG00000008572)	ndrg1a (ENSSLDG00000008509)	ENSSLDG00000008417	dync1li1 (ENSSLDG00000008333)	ENSSLDG00000008286	mrpl3 (ENSSLDG00000008264)	cspg5b (ENSSLDG00000008199)	ENSSLDG00000008078	ENSSLDG00000008044	klhl7 (ENSSLDG00000008015)	hycc1 (ENSSLDG00000007972)	TOMM7 (ENSSLDG00000007948)	ENSSLDG00000007893
Barramundi perch	MODERN SPECIES	163	AHDC1 (ENSLCAG00010007997)	wasf2 (ENSLCAG00010007987)	gpr3 (ENSLCAG00010007985)	ENSLCAG00010007981	sytl1 (ENSLCAG00010007948)	efcab1 (ENSLCAG00010007937)	rbm48 (ENSLCAG00010007933)	pex1 (ENSLCAG00010007927)	elmo1 (ENSLCAG00010007762)	rp9 (ENSLCAG00010007717)	si:dkey-184p18.2 (ENSLCAG00010007709)	poc1bl (ENSLCAG00010007691)	GALNT12 (ENSLCAG00010007667)	gabbr2 (ENSLCAG00010007616)	ENSLCAG00010007594	ctnnal1 (ENSLCAG00010007489) #22	abitram (ENSLCAG00010007378) #23	sla1a (ENSLCAG00010007352)	ccn4a (ENSLCAG00010007349)	ndrg1a (ENSLCAG00010007308)	ENSLCAG00010007294	ENSLCAG00010007288	ENSLCAG00010007201	dync1li1 (ENSLCAG00010007073)	ENSLCAG00010007045	mrpl3 (ENSLCAG00010007039)	cspg5b (ENSLCAG00010007033)	ENSLCAG00010006789	ENSLCAG00010006651	klhl7 (ENSLCAG00010006568)	hycc1 (ENSLCAG00010006540)
Pleuronectoidei	ANCESTRAL SPECIES	15	ENSGT00940000157554	ENSGT00390000018883	ENSGT00950000182962.b.a	ENSGT01060000248564.b.a.a.a	ENSGT00940000160932	ENSGT00940000159968	ENSGT00390000004541	ENSGT00550000075032	ENSGT00940000155994	ENSGT00940000162490	ENSGT00390000013383	ENSGT00940000163607	ENSGT00940000157173	ENSGT00940000155783	ENSGT00390000000916	ENSGT01030000234543.F #22	ENSGT00450000040303 #23	ENSGT00940000159104.c	ENSGT00940000158587.c.b	ENSGT00950000182872.f.a.b.p	ENSGT00910000145033	ENSGT00940000155471.c	ENSGT00390000008295.b	ENSGT00940000155519.qb.b.f	ENSGT00390000011422	ENSGT00440000034270.a.a	ENSGT00940000156347	ENSGT00390000010145.c.b	ENSGT00940000155602.r.b	ENSGT00940000155602.r.a	ENSGT00390000011295.b
Tongue sole	MODERN SPECIES	9	clk2a (ENSCSEG00000007968)	ENSCSEG00000008006	dnajc8 (ENSCSEG00000008018)	hnrnpr (ENSCSEG00000008039)	ENSCSEG00000008062	ADGRB1 (ENSCSEG00000008104)	ENSCSEG00000008226	spag1a (ENSCSEG00000008256)	elmo1 (ENSCSEG00000008265)	rp9 (ENSCSEG00000008277)	si:dkey-184p18.2 (ENSCSEG00000008292)	poc1bl (ENSCSEG00000008297)	GALNT12 (ENSCSEG00000008313)	gabbr2 (ENSCSEG00000008315)	elp2 (ENSCSEG00000008340)	ctnnal1 (ENSCSEG00000008373) #22	abitram (ENSCSEG00000008417) #23	sla1a (ENSCSEG00000008432)	ccn4a (ENSCSEG00000008440)	ndrg1a (ENSCSEG00000008454)	ENSCSEG00000008483	ENSCSEG00000008499	dync1li1 (ENSCSEG00000008585)	CPNE4 (ENSCSEG00000008625)	ENSCSEG00000008632	mrpl3 (ENSCSEG00000008636)	cspg5b (ENSCSEG00000008644)	ENSCSEG00000008653	ASTE1 (ENSCSEG00000008697)	klhl7 (ENSCSEG00000008709)	hycc1 (ENSCSEG00000008756)
Turbot	MODERN SPECIES	14	ENSSMAG00000011214	wasf2 (ENSSMAG00000011240)	gpr3 (ENSSMAG00000011252)	ENSSMAG00000011273	ENSSMAG00000011308	ENSSMAG00000011292	pex1 (ENSSMAG00000011321)	ENSSMAG00000027956	elmo1 (ENSSMAG00000012599)	rp9 (ENSSMAG00000012574)	si:dkey-184p18.2 (ENSSMAG00000012564)	poc1bl (ENSSMAG00000012533)	ENSSMAG00000012511	gabbr2 (ENSSMAG00000012423)	elp2 (ENSSMAG00000012337)	ENSSMAG00000012223 #22	ENSSMAG00000012305 #23	sla1a (ENSSMAG00000012212)	ENSSMAG00000012191	ndrg1a (ENSSMAG00000012044)	ENSSMAG00000012003	ENSSMAG00000012011	ENSSMAG00000011923	dync1li1 (ENSSMAG00000011811)	ENSSMAG00000011713	mrpl3 (ENSSMAG00000011689)	ENSSMAG00000011664	ENSSMAG00000011622	ENSSMAG00000011614	KLHL7 (ENSSMAG00000011553)	HYCC1 (ENSSMAG00000011534)
Pinecone sodierfish	MODERN SPECIES	2	wasf2 (ENSMMDG00005024242)	gpr3 (ENSMMDG00005024243)	sytl1 (ENSMMDG00005024244)	ENSMMDG00005024247	efcab1 (ENSMMDG00005024248)	rbm48 (ENSMMDG00005024251)	pex1 (ENSMMDG00005024261)	elmo1 (ENSMMDG00005024321)	rp9 (ENSMMDG00005024394)	si:dkey-184p18.2 (ENSMMDG00005024396)	ENSMMDG00005024398	poc1bl (ENSMMDG00005024402)	GALNT12 (ENSMMDG00005024406)	gabbr2 (ENSMMDG00005024407)	elp2 (ENSMMDG00005024409)	ctnnal1 (ENSMMDG00005024410) #22	abitram (ENSMMDG00005024412) #23	sla1a (ENSMMDG00005024416)	ccn4a (ENSMMDG00005004426)	ndrg1a (ENSMMDG00005005429)	ENSMMDG00005005643	ENSMMDG00005005646	ENSMMDG00005005670	dync1li1 (ENSMMDG00005005922)	ENSMMDG00005006249	mrpl3 (ENSMMDG00005006264)	cspg5b (ENSMMDG00005006584)	ENSMMDG00005006666	ENSMMDG00005010861	klhl7 (ENSMMDG00005010863)	hycc1 (ENSMMDG00005010868)
Cod	MODERN SPECIES	14	ENSGMOG00000031112	matn1 (ENSGMOG00000028455)	ENSGMOG00000015579	yrk (ENSGMOG00000036856)	ENSGMOG00000006844	ENSGMOG00000006858	ENSGMOG00000026484	pex1 (ENSGMOG00000006887)	elmo1 (ENSGMOG00000006928)	rp9 (ENSGMOG00000000528)	ENSGMOG00000029622	poc1bl (ENSGMOG00000013959)	ENSGMOG00000013986	gabbr2 (ENSGMOG00000016421)	elp2 (ENSGMOG00000016448)	ENSGMOG00000016992 #22	ENSGMOG00000017026 #23	sla1a (ENSGMOG00000017038)	ENSGMOG00000027104	ndrg1a (ENSGMOG00000016926)	ENSGMOG00000016943	ENSGMOG00000016954	dync1li1 (ENSGMOG00000016974)	ENSGMOG00000016995	mrpl3 (ENSGMOG00000017025)	cspg5b (ENSGMOG00000029877)	ENSGMOG00000017055	ENSGMOG00000030835	KLHL7 (ENSGMOG00000017140)	HYCC1 (ENSGMOG00000017173)	TOMM7 (ENSGMOG00000031331)
Protacanthopterygii	ANCESTRAL SPECIES		ENSGT00940000157957	ENSGT00730000111097	ENSGT00470000042293.a.a	ENSGT00940000159968	ENSGT00390000004541	ENSGT00550000075032	ENSGT00940000155994	ENSGT00940000162490.c	ENSGT00940000162490.d	ENSGT00390000013383	ENSGT00940000163607	ENSGT00940000157173	ENSGT00940000155783	ENSGT01000000216370	ENSGT00390000000916	ENSGT01030000234543.F #22	ENSGT00450000040303 #23	ENSGT00940000159104.c	ENSGT00940000158587.c.b	ENSGT00950000182872.f.a.b.p	ENSGT01030000234863	ENSGT00940000159581.b.b	ENSGT00390000004215.a.b.b.c.b.c	ENSGT01060000248801	ENSGT00740000117011	ENSGT00940000163549	ENSGT00940000161897.b.a	ENSGT00390000018422	ENSGT00940000163790	ENSGT00390000016546	ENSGT00940000160387
Northern pike	MODERN SPECIES	9	ENSELUG00000024685	hepacam2 (ENSELUG00000020970)	cdk6 (ENSELUG00000020987)	ENSELUG00000021116	efcab1 (ENSELUG00000021131)	rbm48 (ENSELUG00000021132)	pex1 (ENSELUG00000021152)	elmo1 (ENSELUG00000021205)	ENSELUG00000026772	ENSELUG00000027557	rp9 (ENSELUG00000021221)	si:dkey-184p18.2 (ENSELUG00000021244)	poc1bl (ENSELUG00000021291)	gabbr2 (ENSELUG00000021429)	elp2 (ENSELUG00000021466)	ctnnal1 (ENSELUG00000021550) #22	abitram (ENSELUG00000021583) #23	sla1a (ENSELUG00000021591)	ccn4a (ENSELUG00000021617)	ndrg1a (ENSELUG00000021746)	ENSELUG00000000945	ENSELUG00000021809	ptp4a3a (ENSELUG00000027384)	zgc:86598 (ENSELUG00000021886)	hsf1 (ENSELUG00000022036)	bop1 (ENSELUG00000022099)	scxa (ENSELUG00000022057)	ENSELUG00000022135	hgh1 (ENSELUG00000022164)	RECQL4 (ENSELUG00000022177)	ENSELUG00000022216
Salmoninae	DUPLICATION
Salmoninae	DUPLICATION
Salmoninae	ANCESTRAL SPECIES	480															ENSGT01000000216370	ENSGT01030000234543.F.c.a #22	ENSGT00450000040303.u.a #23	ENSGT00940000159104.c.e	ENSGT00940000158587.c.b.f	ENSGT00950000182872.f.a.b.p.c	ENSGT01030000234863	ENSGT00940000159581.b.b.a	ENSGT00390000004215.a.b.b.c.b.c.c	ENSGT01060000248801.d.b	ENSGT00740000117011	ENSGT00940000163549.g	ENSGT00940000161897.b.a.d	ENSGT00390000018422.f	ENSGT00940000163790.b	ENSGT00390000016546.i	ENSGT00940000160387.c
Huchen	DUPLICATION
Huchen	MODERN SPECIES	275															ENSHHUG00000027428 #22	ENSHHUG00000027417 #22	ENSHHUG00000027413 #22	ENSHHUG00000027409	sla1a (ENSHHUG00000027388)	ENSHHUG00000027387	ccn4a (ENSHHUG00000027385)	ndrg1a (ENSHHUG00000027237)	ENSHHUG00000027233	ENSHHUG00000027225	ptp4a3a (ENSHHUG00000027224)	zgc:86598 (ENSHHUG00000027057)	ENSHHUG00000027031	si:ch211-80h18.1 (ENSHHUG00000026975)	hsf1 (ENSHHUG00000026802)	scxa (ENSHHUG00000026793)	bop1 (ENSHHUG00000026449)
Huchen	MODERN SPECIES	275																ENSHHUG00000027428 #22	ENSHHUG00000027417 #22	ENSHHUG00000027413 #22	ENSHHUG00000027409	sla1a (ENSHHUG00000027388)	ENSHHUG00000027387	ccn4a (ENSHHUG00000027385)	ndrg1a (ENSHHUG00000027237)	ENSHHUG00000027233	ENSHHUG00000027225	ptp4a3a (ENSHHUG00000027224)	zgc:86598 (ENSHHUG00000027057)	ENSHHUG00000027031	si:ch211-80h18.1 (ENSHHUG00000026975)	hsf1 (ENSHHUG00000026802)	scxa (ENSHHUG00000026793)
Salmoninae_a	ANCESTRAL SPECIES	5	ENSGT00390000003442.i.b	ENSGT01100000263551.b.b.b.c	ENSGT00940000157957.j.b	ENSGT00730000111097.a	ENSGT00470000042293.a.a	ENSGT00940000159968.j	ENSGT00390000004541	ENSGT00550000075032	ENSGT00940000155994.i.a.b	ENSGT00940000162490.c	ENSGT00940000165672.q	ENSGT00940000163607.f	ENSGT00940000157173.d.a	ENSGT00940000155783.q.a	ENSGT01000000216370	ENSGT01030000234543.F.c.a #22	ENSGT00450000040303.u.a #23	ENSGT00940000159104.c.e	ENSGT00940000158587.c.b.f	ENSGT00950000182872.f.a.b.p.c	ENSGT01030000234863	ENSGT00940000159581.b.b.a	ENSGT00390000004215.a.b.b.c.b.c.c	ENSGT01060000248801.d.b	ENSGT00740000117011	ENSGT00940000163549.g	ENSGT00940000161897.b.a.d	ENSGT00390000018422.f	ENSGT00940000163790.b	ENSGT00940000163790.a	ENSGT00390000016546.i
Oncorhynchus	ANCESTRAL SPECIES	16	ENSGT00390000003442.i.b	ENSGT01100000263551.b.b.b.c	ENSGT00940000157957.j.b	ENSGT00730000111097.a	ENSGT00470000042293.a.a	ENSGT00940000159968.j	ENSGT00390000004541	ENSGT00550000075032	ENSGT00940000155994.i.a.b	ENSGT00940000162490.c	ENSGT00940000165672.q	ENSGT00940000163607.f	ENSGT00940000157173.d.a	ENSGT00940000155783.q.a	ENSGT01000000216370	ENSGT01030000234543.F.c.a #22	ENSGT00450000040303.u.a #23	ENSGT00940000159104.c.e	ENSGT00940000158587.c.b.f	ENSGT00950000182872.f.a.b.p.c	ENSGT01030000234863	ENSGT00940000159581.b.b.a	ENSGT00390000004215.a.b.b.c.b.c.c	ENSGT01060000248801.d.b	ENSGT00740000117011	ENSGT00940000163549.g	ENSGT00940000161897.b.a.d	ENSGT00390000018422.f	ENSGT00940000163790.b	ENSGT00940000163790.a	ENSGT00390000016546.i
Oncorhynchus_a	ANCESTRAL SPECIES	6	ENSGT00390000003442.i.b	ENSGT01100000263551.b.b.b.c	ENSGT00940000157957.j.b	ENSGT00730000111097.a	ENSGT00470000042293.a.a	ENSGT00940000159968.j	ENSGT00390000004541	ENSGT00550000075032	ENSGT00940000155994.i.a.b	ENSGT00940000162490.c	ENSGT00940000165672.q	ENSGT00940000163607.f	ENSGT00940000157173.d.a	ENSGT00940000155783.q.a	ENSGT01000000216370	ENSGT01030000234543.F.c.a #22	ENSGT00450000040303.u.a #23	ENSGT00940000159104.c.e	ENSGT00940000158587.c.b.f	ENSGT00950000182872.f.a.b.p.c	ENSGT01030000234863	ENSGT00940000159581.b.b.a	ENSGT00390000004215.a.b.b.c.b.c.c	ENSGT01060000248801.d.b	ENSGT00740000117011	ENSGT00940000163549.g	ENSGT00940000161897.b.a.d	ENSGT00390000018422.f	ENSGT00940000163790.b	ENSGT00390000016546.i	ENSGT00940000160042.d.b
Chinook salmon	MODERN SPECIES	24	cdk6 (ENSOTSG00005002850)	fam133b (ENSOTSG00005002857)	ENSOTSG00005002864	efcab1 (ENSOTSG00005002872)	rbm48 (ENSOTSG00005002883)	pex1 (ENSOTSG00005003003)	elmo1 (ENSOTSG00005004313)	ENSOTSG00005005282	rp9 (ENSOTSG00005005283)	ENSOTSG00005005285	ENSOTSG00005005288	poc1bl (ENSOTSG00005005290)	ENSOTSG00005005469	gabbr2 (ENSOTSG00005005471)	ENSOTSG00005005490	ctnnal1 (ENSOTSG00005005493) #22	abitram (ENSOTSG00005005500) #23	sla1a (ENSOTSG00005005502)	ccn4a (ENSOTSG00005005517)	ndrg1a (ENSOTSG00005005520)	si:rp71-45k5.2 (ENSOTSG00005005551)	ptp4a3a (ENSOTSG00005005553)	zgc:86598 (ENSOTSG00005005557)	ENSOTSG00005005679	ENSOTSG00005005681	hsf1 (ENSOTSG00005005683)	bop1 (ENSOTSG00005005720)	scxa (ENSOTSG00005005735)	ENSOTSG00005005736	hgh1 (ENSOTSG00005005737)	ENSOTSG00005005740
Coho salmon	MODERN SPECIES	5	fam133b (ENSOKIG00005013968)	ENSOKIG00005013964	efcab1 (ENSOKIG00005013953)	rbm48 (ENSOKIG00005013948)	pex1 (ENSOKIG00005013522)	ENSOKIG00005013469	ELMO1 (ENSOKIG00005009843)	rp9 (ENSOKIG00005009669)	ENSOKIG00005009658	ENSOKIG00005009649	poc1bl (ENSOKIG00005009633)	ENSOKIG00005009563	gabbr2 (ENSOKIG00005009485)	ENSOKIG00005009477	ENSOKIG00005009472	CTNNAL1 (ENSOKIG00005009280) #22	sla1a (ENSOKIG00005009202)	ccn4a (ENSOKIG00005009183)	ndrg1a (ENSOKIG00005009154)	ENSOKIG00005009138	ENSOKIG00005009125	ENSOKIG00005009116	ENSOKIG00005009110	ENSOKIG00005009104	PTP4A3 (ENSOKIG00005009088)	zgc:86598 (ENSOKIG00005008901)	ENSOKIG00005008841	si:ch211-80h18.1 (ENSOKIG00005008808)	hsf1 (ENSOKIG00005008757)	scxa (ENSOKIG00005008743)	bop1 (ENSOKIG00005008679)
Rainbow trout	MODERN SPECIES	24	CDK6 (ENSOMYG00000015710)	ENSOMYG00000066650	ENSOMYG00000015975	ENSOMYG00000015981	rbm48 (ENSOMYG00000015989)	pex1 (ENSOMYG00000015768)	ENSOMYG00000016008	ENSOMYG00000068424	ENSOMYG00000053036	rp9 (ENSOMYG00000016290)	ENSOMYG00000016302	poc1bl (ENSOMYG00000016312)	ENSOMYG00000016329	gabbr2 (ENSOMYG00000016401)	ENSOMYG00000055180	ENSOMYG00000016526 #22	ENSOMYG00000050612 #23	sla1a (ENSOMYG00000016761)	ccn4a (ENSOMYG00000016780)	ndrg1a (ENSOMYG00000016800)	ENSOMYG00000059591	ENSOMYG00000016881	ENSOMYG00000049413	zgc:86598 (ENSOMYG00000016927)	ENSOMYG00000017140	ENSOMYG00000017181	hsf1 (ENSOMYG00000017206)	bop1 (ENSOMYG00000017373)	ENSOMYG00000073896	scxa (ENSOMYG00000017606)	ENSOMYG00000053659
Salmo	ANCESTRAL SPECIES	2	ENSGT00390000003442.i.b	ENSGT01100000263551.b.b.b.c	ENSGT00940000157957.j.b	ENSGT00730000111097.a	ENSGT00470000042293.a.a	ENSGT00940000159968.j	ENSGT00390000004541.k	ENSGT00550000075032	ENSGT00940000155994.i.a.b	ENSGT00940000162490.c	ENSGT00940000165672.q	ENSGT00940000163607.f	ENSGT00940000157173.d.a	ENSGT00940000155783.q.a	ENSGT01000000216370	ENSGT01030000234543.F.c.a #22	ENSGT00450000040303.v #23	ENSGT00940000159104.c.e	ENSGT00940000158587.c.b.f	ENSGT00950000182872.f.a.b.p.c	ENSGT01030000234863.i	ENSGT00940000159581.b.b.a	ENSGT00390000004215.a.b.b.c.b.c.c	ENSGT01060000248801.d.b	ENSGT00740000117011	ENSGT00940000163549.g	ENSGT00940000161897.b.a.d	ENSGT00390000018422.f	ENSGT00940000163790.a	ENSGT00390000016546.i	ENSGT00940000160387.c
Atlantic salmon	MODERN SPECIES	5	vps50 (ENSSSAG00000027129)	hepacam2 (ENSSSAG00000112661)	F133 (ENSSSAG00000023617)	ENSSSAG00000023344	ENSSSAG00000096965	rbm48 (ENSSSAG00000021695)	pex1 (ENSSSAG00000015786)	ENSSSAG00000015253	rp9 (ENSSSAG00000014980)	ENSSSAG00000115353	ENSSSAG00000101657	poc1bl (ENSSSAG00000014518)	ENSSSAG00000013052	ENSSSAG00000048462	gabbr2 (ENSSSAG00000010191)	ENSSSAG00000108698 #22	ENSSSAG00000087430 #23	sla1a (ENSSSAG00000049015)	ccn4a (ENSSSAG00000048991)	NDRG1 (ENSSSAG00000111781)	ENSSSAG00000048896	ENSSSAG00000048887	ENSSSAG00000048870	csk21 (ENSSSAG00000048442)	ENSSSAG00000048365	si:ch211-80h18.1 (ENSSSAG00000048246)	hsf1 (ENSSSAG00000009703)	ENSSSAG00000084370	scxa (ENSSSAG00000095221)	bop1 (ENSSSAG00000047288)	ENSSSAG00000047261
River trout	MODERN SPECIES	29	CALCR (ENSSTUG00000043987)	VPS50 (ENSSTUG00000044307)	cdk6 (ENSSTUG00000046426)	fam133b (ENSSTUG00000046434)	ENSSTUG00000046439	efcab1 (ENSSTUG00000046442)	rbm48 (ENSSTUG00000046445)	pex1 (ENSSTUG00000046463)	elmo1 (ENSSTUG00000046842)	rp9 (ENSSTUG00000047197)	ENSSTUG00000047209	poc1bl (ENSSTUG00000047221)	GALNT12 (ENSSTUG00000047241)	gabbr2 (ENSSTUG00000047271)	ENSSTUG00000047392	ctnnal1 (ENSSTUG00000047404) #22	sla1a (ENSSTUG00000047524)	ccn4a (ENSSTUG00000047559)	ndrg1a (ENSSTUG00000047568)	zgc:113424 (ENSSTUG00000047638)	ptp4a3a (ENSSTUG00000047641)	zgc:86598 (ENSSTUG00000047657)	ENSSTUG00000047740	ENSSTUG00000047750	hsf1 (ENSSTUG00000047759)	bop1 (ENSSTUG00000047856)	scxa (ENSSTUG00000047891)	ENSSTUG00000047895	hgh1 (ENSSTUG00000047903)	ENSSTUG00000047907	slc39a4 (ENSSTUG00000047919)
Salmoninae	ANCESTRAL SPECIES	48	ENSGT00940000159917.c	ENSGT00940000155380.ud	ENSGT00390000003442.i.a	ENSGT01100000263551.b.b.b.d	ENSGT00940000157957.j.a	ENSGT00730000111097.b	ENSGT00940000177254	ENSGT00940000159968.i	ENSGT00940000155994.i.a.a	ENSGT00940000162490.d	ENSGT00390000013383	ENSGT00940000163607.e	ENSGT00940000157173.d.b	ENSGT00940000155783.q.b	ENSGT00390000000916	ENSGT01030000234543.F.c.b #22	ENSGT00450000040303.u.b #23	ENSGT00940000159104.c.f	ENSGT00940000158587.c.b.e	ENSGT00950000182872.f.a.b.p.d	ENSGT00940000159581.b.b.b	ENSGT00390000004215.a.b.b.c.b.c.d	ENSGT01060000248801.d.a	ENSGT00940000163549.h	ENSGT00940000161897.b.a.c	ENSGT00390000018422.e	ENSGT01020000232004	ENSGT00390000016546.j	ENSGT00940000160387.d	ENSGT00940000160042.c	ENSGT00940000160042.d.a
Salmoninae_a	ANCESTRAL SPECIES	28	ENSGT00940000159917.c	ENSGT00940000155380.ud	ENSGT00390000003442.i.a	ENSGT01100000263551.b.b.b.d	ENSGT00940000157957.j.a	ENSGT00730000111097.b	ENSGT00940000177254	ENSGT00940000159968.i	ENSGT00940000155994.i.a.a	ENSGT00940000162490.d	ENSGT00390000013383	ENSGT00940000163607.e	ENSGT00940000157173.d.b	ENSGT00940000155783.q.b	ENSGT00390000000916	ENSGT01030000234543.F.c.b #22	ENSGT00450000040303.u.b #23	ENSGT00940000159104.c.f	ENSGT00940000158587.c.b.e	ENSGT00950000182872.f.a.b.p.d	ENSGT00940000159581.b.b.b	ENSGT00390000004215.a.b.b.c.b.c.d	ENSGT01060000248801.d.a	ENSGT00940000163549.h	ENSGT00940000161897.b.a.c	ENSGT00390000018422.e	ENSGT01020000232004	ENSGT00390000016546.j	ENSGT00940000160387.d	ENSGT00940000160042.d.a	ENSGT00940000154491.c.a.b.c
Salmo	ANCESTRAL SPECIES	2	ENSGT00940000155380.ud	ENSGT00390000003442.i.a.d.b	ENSGT00390000003442.i.a.d.a	ENSGT01100000263551.b.b.b.d	ENSGT00940000157957.j.a	ENSGT00730000111097.b	ENSGT00940000159968.i	ENSGT00390000004541.l	ENSGT00940000155994.i.a.a	ENSGT00940000162490.d	ENSGT00390000013383	ENSGT00940000163607.e	ENSGT00940000157173.d.b	ENSGT00940000155783.q.b	ENSGT00390000000916	ENSGT01030000234543.F.c.b #22	ENSGT00940000159104.c.f	ENSGT00940000158587.c.b.e	ENSGT00950000182872.f.a.b.p.d	ENSGT00940000159581.b.b.b	ENSGT00390000004215.a.b.b.c.b.c.d	ENSGT01060000248801.d.a	ENSGT00940000163549.h	ENSGT00940000161897.b.a.c	ENSGT00390000018422.e	ENSGT00940000163790.b	ENSGT00390000016546.j	ENSGT00940000160387.d	ENSGT00940000160042.d.a	ENSGT00940000154491.c.a.b.c	ENSGT00390000014944.b.c
Atlantic salmon	MODERN SPECIES	19	ENSSSAG00000082530	ENSSSAG00000084488	ENSSSAG00000099757	hepacam2 (ENSSSAG00000070538)	CDK6 (ENSSSAG00000100175)	ENSSSAG00000070560	ENSSSAG00000115786	elmo1 (ENSSSAG00000070608)	rp9 (ENSSSAG00000101772)	ENSSSAG00000090888	si:dkey-184p18.2 (ENSSSAG00000070962)	poc1bl (ENSSSAG00000070980)	ENSSSAG00000071019	gabbr2 (ENSSSAG00000071063)	elp2 (ENSSSAG00000071114)	ENSSSAG00000083300 #22	ENSSSAG00000102759	sla1a (ENSSSAG00000071290)	ENSSSAG00000094819	ENSSSAG00000118011	NDRG1 (ENSSSAG00000008949)	ENSSSAG00000101022	ENSSSAG00000009463	ENSSSAG00000009501	ENSSSAG00000088599	hsf1 (ENSSSAG00000107324)	scxa (ENSSSAG00000023878)	bop1 (ENSSSAG00000021588)	ENSSSAG00000023945	brp16 (ENSSSAG00000024112)	ENSSSAG00000024550
River trout	MODERN SPECIES	27	VPS50 (ENSSTUG00000041217)	hepacam2 (ENSSTUG00000041280)	cdk6 (ENSSTUG00000041308)	fam133b (ENSSTUG00000041337)	ENSSTUG00000041364	ENSSTUG00000041368	efcab1 (ENSSTUG00000041406)	rbm48 (ENSSTUG00000041427)	elmo1 (ENSSTUG00000041481)	rp9 (ENSSTUG00000041949)	si:dkey-184p18.2 (ENSSTUG00000041993)	poc1bl (ENSSTUG00000042002)	ENSSTUG00000042040	gabbr2 (ENSSTUG00000042075)	elp2 (ENSSTUG00000042151)	ctnnal1 (ENSSTUG00000042556) #22	sla1a (ENSSTUG00000042833)	ccn4a (ENSSTUG00000042901)	ndrg1a (ENSSTUG00000042970)	ptp4a3a (ENSSTUG00000043400)	zgc:86598 (ENSSTUG00000043436)	ENSSTUG00000043657	hsf1 (ENSSTUG00000043691)	bop1 (ENSSTUG00000043797)	scxa (ENSSTUG00000044441)	ENSSTUG00000044447	hgh1 (ENSSTUG00000044451)	ENSSTUG00000044469	ENSSTUG00000044595	scrt1a (ENSSTUG00000044612)	zgc:63863 (ENSSTUG00000044624)
Oncorhynchus	ANCESTRAL SPECIES	29	ENSGT00940000155380.ud	ENSGT00390000003442.i.a	ENSGT01100000263551.b.b.b.d	ENSGT00940000157957.j.a	ENSGT00730000111097.b	ENSGT00940000177254	ENSGT00940000159968.i	ENSGT00940000155994.i.a.a	ENSGT00940000155994.j	ENSGT00940000162490.d	ENSGT00390000013383	ENSGT00940000163607.e	ENSGT00940000157173.d.b	ENSGT00940000155783.q.b	ENSGT00390000000916	ENSGT01030000234543.F.c.b #22	ENSGT00450000040303.u.b #23	ENSGT00940000159104.c.f	ENSGT00940000158587.c.b.e	ENSGT00950000182872.f.a.b.p.d	ENSGT00940000159581.b.b.b	ENSGT00390000004215.a.b.b.c.b.c.d	ENSGT01060000248801.d.a	ENSGT00940000163549.h	ENSGT00940000161897.b.a.c	ENSGT00390000018422.e	ENSGT00390000016546.j	ENSGT00940000160387.d	ENSGT00940000160042.d.a	ENSGT00940000154491.c.a.b.c	ENSGT00390000014944.b.c
Rainbow trout	MODERN SPECIES	9	hepacam2 (ENSOMYG00000010514)	CDK6 (ENSOMYG00000010534)	ENSOMYG00000010541	ENSOMYG00000010563	ENSOMYG00000010585	ENSOMYG00000070091	ENSOMYG00000010799	rp9 (ENSOMYG00000011615)	si:dkey-184p18.2 (ENSOMYG00000011632)	ENSOMYG00000066649	ENSOMYG00000060579	poc1bl (ENSOMYG00000011644)	ENSOMYG00000011664	gabbr2 (ENSOMYG00000011723)	elp2 (ENSOMYG00000011757)	ENSOMYG00000011941 #22	ENSOMYG00000050808	ENSOMYG00000011970 #23	sla1a (ENSOMYG00000011991)	ENSOMYG00000048294	ENSOMYG00000065471	ENSOMYG00000012003	ndrg1a (ENSOMYG00000012025)	ENSOMYG00000064480	ENSOMYG00000077275	ENSOMYG00000012074	ENSOMYG00000075918	ENSOMYG00000050627	ENSOMYG00000012142	ENSOMYG00000050560	hsf1a (ENSOMYG00000012216)
Oncorhynchus_a	ANCESTRAL SPECIES	29	ENSGT00940000175665	ENSGT00940000164410.f.a	ENSGT00940000155380.ud	ENSGT00390000003442.i.a	ENSGT01100000263551.b.b.b.d	ENSGT00940000157957.j.a	ENSGT00730000111097.b	ENSGT00940000159968.i	ENSGT00940000155994.i.a.a	ENSGT01000000220518	ENSGT00390000013383	ENSGT00940000163607.e	ENSGT00940000157173.d.b	ENSGT00940000155783.q.b	ENSGT00390000000916	ENSGT01030000234543.F.c.b #22	ENSGT00450000040303.u.b #23	ENSGT00940000159104.c.f	ENSGT00940000158587.c.b.e	ENSGT00950000182872.f.a.b.p.d	ENSGT00940000159581.b.b.b	ENSGT00390000004215.a.b.b.c.b.c.d	ENSGT01060000248801.d.a	ENSGT00940000163549.h	ENSGT00940000161897.b.a.c	ENSGT00390000018422.e	ENSGT00390000016546.j	ENSGT00940000160387.d	ENSGT00940000160042.d.a	ENSGT00940000154491.c.a.b.c	ENSGT00390000014944.b.c
Coho salmon	MODERN SPECIES	8	CALCR (ENSOKIG00005019098)	VPS50 (ENSOKIG00005018838)	hepacam2 (ENSOKIG00005018803)	ENSOKIG00005018796	CDK6 (ENSOKIG00005018779)	ENSOKIG00005018749	CLXN (ENSOKIG00005018735)	elmo1 (ENSOKIG00005018325)	ENSOKIG00005018284	si:dkey-184p18.2 (ENSOKIG00005018275)	ENSOKIG00005018271	poc1bl (ENSOKIG00005018258)	GALNT12 (ENSOKIG00005018198)	gabbr2 (ENSOKIG00005018182)	elp2 (ENSOKIG00005017773)	ctnnal1 (ENSOKIG00005017698) #22	ENSOKIG00005017667 #23	sla1a (ENSOKIG00005017657)	ccn4a (ENSOKIG00005017650)	ndrg1a (ENSOKIG00005017582)	ptp4a3a (ENSOKIG00005017570)	zgc:86598 (ENSOKIG00005017374)	ENSOKIG00005017320	ENSOKIG00005017294	hsf1 (ENSOKIG00005017234)	scxa (ENSOKIG00005017210)	bop1 (ENSOKIG00005016763)	hgh1 (ENSOKIG00005016743)	ENSOKIG00005016515	ENSOKIG00005016485	scrt1a (ENSOKIG00005016473)
Chinook salmon	MODERN SPECIES	4	casd1 (ENSOTSG00005004123)	col1a2 (ENSOTSG00005003152)	bet1 (ENSOTSG00005003118)	zgc:85777 (ENSOTSG00005003117)	ENSOTSG00005003114	tfpi2 (ENSOTSG00005003112)	ENSOTSG00005003110	zgc:85777 (ENSOTSG00005003108)	VPS50 (ENSOTSG00005003104)	ENSOTSG00005003101	hepacam2 (ENSOTSG00005003098)	ENSOTSG00005003095	si:dkey-184p18.2 (ENSOTSG00005003091)	GALNT12 (ENSOTSG00005003078)	elp2 (ENSOTSG00005003021)	ctnnal1 (ENSOTSG00005002992) #22	abitram (ENSOTSG00005002989) #23	sla1a (ENSOTSG00005002970)	ccn4a (ENSOTSG00005002964)	ndrg1a (ENSOTSG00005002933)	ptp4a3a (ENSOTSG00005002908)	zgc:86598 (ENSOTSG00005002869)	ENSOTSG00005002834	hsf1 (ENSOTSG00005002796)	scxa (ENSOTSG00005002635)	bop1 (ENSOTSG00005002381)	hgh1 (ENSOTSG00005002061)	RECQL4 (ENSOTSG00005001965)	slc39a4 (ENSOTSG00005001790)	mycn (ENSOTSG00005001619)	kif3a (ENSOTSG00005015002)
Huchen	MODERN SPECIES	1571															elp2 (ENSHHUG00000050153)	ctnnal1 (ENSHHUG00000050136) #22	abitram (ENSHHUG00000050126) #23	sla1a (ENSHHUG00000050116)	ccn4a (ENSHHUG00000050111)	ndrg1a (ENSHHUG00000050066)
Salmoninae	ANCESTRAL SPECIES																	ENSGT01030000234543.F.d #22
Huchen	MODERN SPECIES	275														ENSHHUG00000027428 #22	ENSHHUG00000027417 #22	ENSHHUG00000027413 #22	ENSHHUG00000027409	sla1a (ENSHHUG00000027388)	ENSHHUG00000027387	ccn4a (ENSHHUG00000027385)	ndrg1a (ENSHHUG00000027237)	ENSHHUG00000027233	ENSHHUG00000027225	ptp4a3a (ENSHHUG00000027224)	zgc:86598 (ENSHHUG00000027057)	ENSHHUG00000027031	si:ch211-80h18.1 (ENSHHUG00000026975)	hsf1 (ENSHHUG00000026802)	scxa (ENSHHUG00000026793)	bop1 (ENSHHUG00000026449)	ENSHHUG00000026442
Otomorpha	ANCESTRAL SPECIES	139		ENSGT00390000016546	ENSGT01020000232004	ENSGT00390000018422	ENSGT00940000161897.b.a	ENSGT00940000163549	ENSGT00740000117011	ENSGT01060000248801	ENSGT00390000004215.a.b.b.c.b.c	ENSGT00940000159581.b.b	ENSGT01030000234863.a	ENSGT01030000234863.b	ENSGT00950000182872.f.a.b.p	ENSGT00940000158587.c.b	ENSGT00940000159104.c	ENSGT01030000234543.F #22	ENSGT00450000040303 #23	ENSGT00390000000916	ENSGT00940000155783	ENSGT00940000171718	ENSGT00940000157173	ENSGT00940000163607	ENSGT00390000013383	ENSGT00940000162490	ENSGT00940000155994	ENSGT00550000075032	ENSGT00390000004541	ENSGT00940000159968	ENSGT00940000177254	ENSGT00940000177506	ENSGT00470000042293.a.a
Clupeiformes	ANCESTRAL SPECIES	15				ENSGT00940000160387	ENSGT00390000016546	ENSGT01020000232004	ENSGT00390000018422	ENSGT00940000161897.b.a	ENSGT00940000163549	ENSGT00390000004215.a.b.b.c.b.c	ENSGT00940000159581.b.b.d	ENSGT01030000234863.a	ENSGT00950000182872.f.a.b.p	ENSGT00940000158587.c.b	ENSGT00940000159104.c	ENSGT01030000234543.F #22	ENSGT00450000040303 #23	ENSGT00390000000916	ENSGT00940000155783	ENSGT00940000157173	ENSGT00940000163607	ENSGT00390000013383	ENSGT00940000162490	ENSGT00940000155994	ENSGT00550000075032	ENSGT00390000004541	ENSGT00940000159968	ENSGT00470000042293.a.a	ENSGT00940000157957	ENSGT00730000111097	ENSGT01100000263551.b.b.b
Atlantic herring	MODERN SPECIES	10	ENSCHAG00000012036	gnrhr1 (ENSCHAG00000012108)	ENSCHAG00000012163	ENSCHAG00000012177	bop1 (ENSCHAG00000012215)	scxa (ENSCHAG00000012644)	hsf1 (ENSCHAG00000012658)	ENSCHAG00000012763	ENSCHAG00000012790	zgc:86598 (ENSCHAG00000012843)	ptp4a3a (ENSCHAG00000013082)	ENSCHAG00000013123	ndrg1a (ENSCHAG00000013171)	ccn4a (ENSCHAG00000013345)	sla1a (ENSCHAG00000013352)	ctnnal1 (ENSCHAG00000013363) #22	abitram (ENSCHAG00000013496) #23	elp2 (ENSCHAG00000013564)	gabbr2 (ENSCHAG00000013812)	GALNT12 (ENSCHAG00000014024)	poc1bl (ENSCHAG00000014243)	si:dkey-184p18.2 (ENSCHAG00000014527)	rp9 (ENSCHAG00000014541)	elmo1 (ENSCHAG00000014572)	pex1 (ENSCHAG00000015194)	rbm48 (ENSCHAG00000016032)	efcab1 (ENSCHAG00000016037)	ENSCHAG00000016073	cdk6 (ENSCHAG00000016088)	fam133b (ENSCHAG00000016118)	hepacam2 (ENSCHAG00000016145)
Denticle herring	MODERN SPECIES	12	ENSDCDG00000034673	ENSDCDG00000034660	anxa14 (ENSDCDG00000034650)	zgc:114119 (ENSDCDG00000034645)	ENSDCDG00000034639	tpmt.1 (ENSDCDG00000034634)	ENSDCDG00000034630	sdc2 (ENSDCDG00000034626)	angpt1 (ENSDCDG00000034605)	abrab (ENSDCDG00000034598)	SAMD12 (ENSDCDG00000034595)	ext1b (ENSDCDG00000034582)	med30 (ENSDCDG00000034579)	SLC30A8 (ENSDCDG00000034578)	ENSDCDG00000034574	ctnnal1 (ENSDCDG00000034569) #22	abitram (ENSDCDG00000034562) #23	elp2 (ENSDCDG00000034547)	gabbr2 (ENSDCDG00000034542)	GALNT12 (ENSDCDG00000034533)	poc1bl (ENSDCDG00000034516)	ENSDCDG00000034514	si:dkey-184p18.2 (ENSDCDG00000034512)	rp9 (ENSDCDG00000034510)	elmo1 (ENSDCDG00000034140)	pex1 (ENSDCDG00000034110)	rbm48 (ENSDCDG00000034101)	efcab1 (ENSDCDG00000034098)	ENSDCDG00000034096	cdk6 (ENSDCDG00000034093)	fam133b (ENSDCDG00000034091)
Otophysi	ANCESTRAL SPECIES	108	ENSGT00940000154317.a.a	ENSGT00960000186902	ENSGT00940000154383.a	ENSGT00390000008749.e	ENSGT00940000154576	ENSGT00940000158451	ENSGT00390000002919	ENSGT00940000155824.C.fc	ENSGT00940000155272	ENSGT00390000003465.b.a	ENSGT00390000014398	ENSGT01030000234863.b	ENSGT00950000182872.f.a.b.p	ENSGT00940000158587.c.b	ENSGT00940000159104.c	ENSGT01030000234543.F #22	ENSGT00450000040303 #23	ENSGT00390000000916	ENSGT00940000155783	ENSGT00940000171718	ENSGT00940000157173	ENSGT00940000163607	ENSGT00390000013383	ENSGT00940000162490	ENSGT00940000155994	ENSGT00550000075032	ENSGT00390000004541	ENSGT00940000159968	ENSGT00940000177254	ENSGT00940000177506	ENSGT00470000042293.a.a
Characiphysae	ANCESTRAL SPECIES	10	ENSGT00940000154317.a.a	ENSGT00960000186902	ENSGT00940000154383.a	ENSGT00390000008749.e	ENSGT00940000154576	ENSGT00940000158451	ENSGT00390000002919	ENSGT00940000155824.C.fc	ENSGT00940000155272	ENSGT00390000003465.b.a	ENSGT00390000014398	ENSGT01030000234863.b	ENSGT00950000182872.f.a.b.p	ENSGT00940000158587.c.b	ENSGT00940000159104.c	ENSGT01030000234543.F #22	ENSGT00450000040303 #23	ENSGT00390000000916	ENSGT00940000155783	ENSGT00940000157173	ENSGT00940000163607	ENSGT00390000013383	ENSGT00940000162490	ENSGT00940000155994	ENSGT00550000075032	ENSGT00390000004541	ENSGT00940000159968	ENSGT00940000177254	ENSGT00940000177506	ENSGT00470000042293.a.a.m.a	ENSGT00940000157957
Characiphysae_b	ANCESTRAL SPECIES	1	ENSGT00940000154317.a.a	ENSGT00960000186902	ENSGT00940000154383.a	ENSGT00390000008749.e	ENSGT00940000154576	ENSGT00940000158451	ENSGT00390000002919	ENSGT00940000155824.C.fc	ENSGT00940000155272	ENSGT00390000003465.b.a	ENSGT00390000014398	ENSGT01030000234863.b	ENSGT00950000182872.f.a.b.p	ENSGT00940000158587.c.b	ENSGT00940000159104.c	ENSGT01030000234543.F #22	ENSGT00450000040303 #23	ENSGT00390000000916	ENSGT00940000155783	ENSGT00940000157173	ENSGT00940000163607	ENSGT00390000013383	ENSGT00940000162490	ENSGT00940000155994	ENSGT00550000075032	ENSGT00390000004541	ENSGT00940000159968	ENSGT00470000042293.a.a.m.a	ENSGT00940000157957	ENSGT00730000111097	ENSGT01100000263551.b.b.b
Characoidei	ANCESTRAL SPECIES	3	ENSGT00940000154317.a.a	ENSGT00960000186902	ENSGT00940000154383.a	ENSGT00390000008749.e	ENSGT00940000154576	ENSGT00940000158451	ENSGT00390000002919	ENSGT00940000155824.C.fc	ENSGT00940000155272	ENSGT00390000003465.b.a	ENSGT00390000014398	ENSGT01030000234863.b	ENSGT00950000182872.f.a.b.p	ENSGT00940000158587.c.b	ENSGT00940000159104.c	ENSGT01030000234543.F #22	ENSGT00450000040303 #23	ENSGT00390000000916	ENSGT00940000155783	ENSGT00940000157173	ENSGT00940000163607	ENSGT00390000013383	ENSGT00940000162490	ENSGT00940000155994	ENSGT00550000075032	ENSGT00390000004541	ENSGT00940000159968	ENSGT00470000042293.a.a.m.a	ENSGT00940000157957	ENSGT00730000111097	ENSGT01100000263551.b.b.b
Red-bellied piranha	MODERN SPECIES	1	col8a2 (ENSPNAG00000008990)	ptp4a2b (ENSPNAG00000008971)	anln (ENSPNAG00000008948)	ak2 (ENSPNAG00000008929)	rnf19b (ENSPNAG00000008914)	ndufs5 (ENSPNAG00000008899)	MACF1 (ENSPNAG00000008886)	bmp8a (ENSPNAG00000008779)	zgc:91910 (ENSPNAG00000008734)	psma2b (ENSPNAG00000008730)	zgc:113424 (ENSPNAG00000008716)	wdyhv1 (ENSPNAG00000005545)	ndrg1a (ENSPNAG00000001101)	ccn4a (ENSPNAG00000006410)	sla1a (ENSPNAG00000008066)	ctnnal1 (ENSPNAG00000008057) #22	abitram (ENSPNAG00000000610) #23	elp2 (ENSPNAG00000008026)	gabbr2 (ENSPNAG00000008004)	GALNT12 (ENSPNAG00000004751)	poc1bl (ENSPNAG00000007977)	si:dkey-184p18.2 (ENSPNAG00000004802)	rp9 (ENSPNAG00000007963)	elmo1 (ENSPNAG00000007948)	pex1 (ENSPNAG00000000530)	rbm48 (ENSPNAG00000000520)	efcab1 (ENSPNAG00000007858)	ENSPNAG00000000518	cdk6 (ENSPNAG00000000510)	fam133b (ENSPNAG00000000501)	hepacam2 (ENSPNAG00000000492)
Mexicana tetra	MODERN SPECIES	15	ptp4a2b (ENSAMXG00000041155)	anln (ENSAMXG00000032062)	ak2 (ENSAMXG00000002803)	rnf19b (ENSAMXG00000002823)	ndufs5 (ENSAMXG00000041987)	MACF1 (ENSAMXG00000002936)	bmp8a (ENSAMXG00000030829)	tssk6 (ENSAMXG00000025780)	zgc:91910 (ENSAMXG00000033303)	PSMA2 (ENSAMXG00000030145)	wdyhv1 (ENSAMXG00000038760)	zgc:113424 (ENSAMXG00000035406)	ndrg1a (ENSAMXG00000040464)	ccn4a (ENSAMXG00000003391)	sla1a (ENSAMXG00000031372)	ctnnal1 (ENSAMXG00000003430) #22	abitram (ENSAMXG00000032707) #23	elp2 (ENSAMXG00000003453)	gabbr2 (ENSAMXG00000003507)	GALNT12 (ENSAMXG00000030700)	poc1bl (ENSAMXG00000003530)	si:dkey-184p18.2 (ENSAMXG00000003545)	rp9 (ENSAMXG00000038776)	elmo1 (ENSAMXG00000003570)	pex1 (ENSAMXG00000014209)	rbm48 (ENSAMXG00000035300)	efcab1 (ENSAMXG00000029482)	ENSAMXG00000014237	cdk6 (ENSAMXG00000014264)	fam133b (ENSAMXG00000038416)	hepacam2 (ENSAMXG00000014291)
Electric eel	MODERN SPECIES	46	ENSEEEG00000014551	ENSEEEG00000014552	ptp4a2b (ENSEEEG00000014553)	anln (ENSEEEG00000014564)	ak2 (ENSEEEG00000014657)	rnf19b (ENSEEEG00000014659)	ndufs5 (ENSEEEG00000014661)	MACF1 (ENSEEEG00000014706)	bmp8a (ENSEEEG00000016421)	zgc:91910 (ENSEEEG00000016422)	ENSEEEG00000016425	wdyhv1 (ENSEEEG00000016437)	zgc:113424 (ENSEEEG00000016438)	ndrg1a (ENSEEEG00000016498)	sla1a (ENSEEEG00000018606)	ctnnal1 (ENSEEEG00000018608) #22	abitram (ENSEEEG00000018610) #23	elp2 (ENSEEEG00000018613)	gabbr2 (ENSEEEG00000018619)
Channel catfish	MODERN SPECIES	16	ENSIPUG00000022116	ptp4a2b (ENSIPUG00000022124)	anln (ENSIPUG00000022151)	ak2 (ENSIPUG00000022202)	rnf19b (ENSIPUG00000022224)	ndufs5 (ENSIPUG00000022243)	MACF1 (ENSIPUG00000022260)	bmp8a (ENSIPUG00000022331)	zgc:91910 (ENSIPUG00000022335)	psma2b (ENSIPUG00000022346)	wdyhv1 (ENSIPUG00000022386)	zgc:113424 (ENSIPUG00000022411)	NDRG1 (ENSIPUG00000022424)	ccn4a (ENSIPUG00000022463)	sla1a (ENSIPUG00000022477)	ctnnal1 (ENSIPUG00000022498) #22	fam206a (ENSIPUG00000022533) #23	elp2 (ENSIPUG00000022542)	gabbr2 (ENSIPUG00000022556)	galnt12 (ENSIPUG00000022576)	poc1bl (ENSIPUG00000022582)	c24h18orf21 (ENSIPUG00000022595)	rp9 (ENSIPUG00000022601)	Elmo1 (ENSIPUG00000022619)	pex1 (ENSIPUG00000022652)	rbm48 (ENSIPUG00000022664)	efcab1 (ENSIPUG00000022670)	ENSIPUG00000022692	ENSIPUG00000022703	ENSIPUG00000022706	CDK6 (ENSIPUG00000022712)
Cyprinoidei	ANCESTRAL SPECIES	15	ENSGT00940000154317.a.a	ENSGT00940000154383.a	ENSGT00390000008749.e	ENSGT00940000154576	ENSGT00940000158451	ENSGT00390000002919	ENSGT00940000155824.C.ec.a	ENSGT00940000155272	ENSGT00390000003465.b.a	ENSGT00550000074870.u.a.b	ENSGT00390000014398	ENSGT01030000234863.b	ENSGT00950000182872.f.a.b.p	ENSGT00940000158587.c.b	ENSGT00940000159104.c	ENSGT01030000234543.F #22	ENSGT00450000040303 #23	ENSGT00390000000916	ENSGT00940000155783	ENSGT00940000157473.b.a	ENSGT00950000183084.b.a.a.a	ENSGT00950000183084.b.a.a.b.e.a	ENSGT00940000171718	ENSGT00940000157173	ENSGT00940000163607	ENSGT00390000013383	ENSGT00940000162490	ENSGT00940000155994	ENSGT00550000075032	ENSGT00390000012840	ENSGT00980000199767
Zebrafish	MODERN SPECIES	10	ptp4a2b (ENSDARG00000035676)	anln (ENSDARG00000060917)	ak2 (ENSDARG00000005926)	rnf19b (ENSDARG00000060926)	ndufs5 (ENSDARG00000006290)	ENSDARG00000028533	bmp8a (ENSDARG00000035677)	zgc:91910 (ENSDARG00000035678)	wdyhv1 (ENSDARG00000070403)	psma2b (ENSDARG00000035679)	zgc:113424 (ENSDARG00000035680)	si:rp71-45k5.2 (ENSDARG00000093129)	ndrg1a (ENSDARG00000032849)	ccn4a (ENSDARG00000054331)	sla1a (ENSDARG00000054340)	ctnnal1 (ENSDARG00000018162) #22	abitram (ENSDARG00000070407) #23	elp2 (ENSDARG00000017199)	gabbr2 (ENSDARG00000061042)	ENSDARG00000093432	GALNT12 (ENSDARG00000055490)	poc1bl (ENSDARG00000012745)	si:dkey-184p18.2 (ENSDARG00000077407)	rp9 (ENSDARG00000098942)	elmo1 (ENSDARG00000098753)	pex1 (ENSDARG00000098904)	otud6b (ENSDARG00000102705)	ENSDARG00000088316	runx1t1 (ENSDARG00000003680)	triqk (ENSDARG00000076296)	nkd3l (ENSDARG00000070419)
Cyprininae	DUPLICATION
Cyprininae	ANCESTRAL SPECIES																	ENSGT01030000234543.F.e #22
Cyprininae_a	ANCESTRAL SPECIES																	ENSGT01030000234543.F.e #22
Common carp reference	MODERN SPECIES	18	irf2bp2a (ENSCCRG00000051538)	ENSCCRG00000060990	EGLN1 (ENSCCRG00000048167)	tsnax (ENSCCRG00000052146)	disc1 (ENSCCRG00000052147)	ENSCCRG00000057873	SIPA1L2 (ENSCCRG00000017372)	ntpcr (ENSCCRG00000008568)	ENSCCRG00000068777	FOXN2 (ENSCCRG00000056265)	fbxo11a (ENSCCRG00000024380)	msh6 (ENSCCRG00000053441)	KCNK12 (ENSCCRG00000029449)	ENSCCRG00000004235	itga9 (ENSCCRG00000003674)	ENSCCRG00000082424 #22	ENSCCRG00000078802	zmp:0000001138 (ENSCCRG00000023715)	ENSCCRG00000023719	ENSCCRG00000016572	ENSCCRG00000016723	lhcgr (ENSCCRG00000036919)	ACOXL (ENSCCRG00000037098)	bcl2l11 (ENSCCRG00000064559)	ANAPC1 (ENSCCRG00000074851)	vip (ENSCCRG00000029053)	ENSCCRG00000070165	slc29a1a (ENSCCRG00000004846)	ENSCCRG00000005783	ENSCCRG00000005787	ENSCCRG00000005800
Cyprininae	DUPLICATION
Cyprininae	ANCESTRAL SPECIES	369												ENSGT01030000234863.b.b	ENSGT00950000182872.f.a.b.p.f	ENSGT00940000158587.c.b.i	ENSGT00940000159104.c.c	ENSGT01030000234543.F.f.a #22	ENSGT00450000040303.q #23	ENSGT00390000000916.j	ENSGT00940000155783.i.b	ENSGT00940000157173.b	ENSGT00940000163607.b	ENSGT00390000013383.u.a	ENSGT00940000162490.a	ENSGT00940000155994.o.a	ENSGT00550000075032.b	ENSGT00390000012840	ENSGT00980000199767	ENSGT00950000183176.b.f.p	ENSGT00390000017350	ENSGT00390000010285.c.jc	ENSGT00950000182986.a.b.b.m
Goldfish	MODERN SPECIES	10	angpt2b (ENSCARG00000029231)	trappc3 (ENSCARG00000029247)	col8a2 (ENSCARG00000029261)	ptp4a2b (ENSCARG00000029265)	anln (ENSCARG00000029298)	ak2 (ENSCARG00000029440)	rnf19b (ENSCARG00000029553)	MACF1 (ENSCARG00000029690)	bmp8a (ENSCARG00000030315)	PSMA2 (ENSCARG00000030342)	zgc:91910 (ENSCARG00000030587)	ENSCARG00000030594	ndrg1a (ENSCARG00000030619)	ccn4a (ENSCARG00000031278)	sla1a (ENSCARG00000031295)	ctnnal1 (ENSCARG00000031318) #22	abitram (ENSCARG00000031737) #23	gabbr2 (ENSCARG00000031839)	ENSCARG00000031913	GALNT12 (ENSCARG00000031923)	poc1bl (ENSCARG00000031980)	si:dkey-184p18.2 (ENSCARG00000032078)	rp9 (ENSCARG00000032091)	elmo1 (ENSCARG00000032197)	pex1 (ENSCARG00000037349)	otud6b (ENSCARG00000037795)	runx1t1 (ENSCARG00000037985)	triqk (ENSCARG00000038837)	cibar1 (ENSCARG00000038863)	TRIB1 (ENSCARG00000038874)	lratd2a (ENSCARG00000038882)
Cyprininae_a	ANCESTRAL SPECIES	1	ENSGT00940000155722.i.b	ENSGT01030000234513.A.a.a.a.b.d.a.p	ENSGT00940000161110.a.b.v.b	ENSGT00940000164972.f	ENSGT00390000003880.b.a.a	ENSGT00940000154317.a.a.e	ENSGT00940000154383.a.c	ENSGT00390000008749.e.p	ENSGT00940000154576.lb.b	ENSGT00940000158451.b	ENSGT00390000014398.r	ENSGT01030000234863.b.b	ENSGT00950000182872.f.a.b.p.f	ENSGT00940000158587.c.b.i	ENSGT00940000159104.c.c	ENSGT01030000234543.F.f.a #22	ENSGT00450000040303.q #23	ENSGT00390000000916.j	ENSGT00940000155783.i.b	ENSGT00940000157173.b	ENSGT00940000163607.b	ENSGT00390000013383.u.a	ENSGT00940000162490.a	ENSGT00940000155994.o.a	ENSGT00550000075032.b	ENSGT00390000012840	ENSGT00980000199767	ENSGT00950000183176.b.f.p	ENSGT01030000234950.b	ENSGT00390000010285.c.jc	ENSGT00950000182986.a.b.b.m
Golden-line barbel	MODERN SPECIES	564															sla1a (ENSSGRG00000049810)	ctnnal1 (ENSSGRG00000049807) #22	abitram (ENSSGRG00000049806) #23	elp2 (ENSSGRG00000049718)	gabbr2 (ENSSGRG00000049704)	ENSSGRG00000049692	poc1bl (ENSSGRG00000049689)	si:dkey-184p18.2 (ENSSGRG00000049688)	ENSSGRG00000049687	rp9 (ENSSGRG00000049686)	elmo1 (ENSSGRG00000048878)	pex1 (ENSSGRG00000048839)	otud6b (ENSSGRG00000048838)	ENSSGRG00000048834	runx1t1 (ENSSGRG00000048409)
Common carp reference	MODERN SPECIES	12	angpt2b (ENSCCRG00000011576)	trappc3 (ENSCCRG00000021054)	col8a2 (ENSCCRG00000070759)	ptp4a2b (ENSCCRG00000011445)	anln (ENSCCRG00000036289)	ak2 (ENSCCRG00000077299)	rnf19b (ENSCCRG00000011360)	ENSCCRG00000011018	bmp8a (ENSCCRG00000011260)	ENSCCRG00000073687	wdyhv1 (ENSCCRG00000010973)	zgc:113424 (ENSCCRG00000010972)	ndrg1a (ENSCCRG00000009795)	ccn4a (ENSCCRG00000009758)	sla1a (ENSCCRG00000010970)	ctnnal1 (ENSCCRG00000040459) #22	abitram (ENSCCRG00000071192) #23	elp2 (ENSCCRG00000040164)	gabbr2 (ENSCCRG00000078167)	ENSCCRG00000012938	poc1bl (ENSCCRG00000012922)	si:dkey-184p18.2 (ENSCCRG00000061931)	rp9 (ENSCCRG00000012864)	elmo1 (ENSCCRG00000048700)	pex1 (ENSCCRG00000004876)	otud6b (ENSCCRG00000004867)	runx1t1 (ENSCCRG00000052329)	ENSCCRG00000076420	ENSCCRG00000050087	cibar1 (ENSCCRG00000049490)	ENSCCRG00000063450
Cyprininae	ANCESTRAL SPECIES	51	ENSGT00940000169543	ENSGT00940000154383.a.d	ENSGT00390000008749.e.o	ENSGT00940000154576.lb.a	ENSGT00940000158451.a	ENSGT00390000002919	ENSGT00940000155824.C.ec.a	ENSGT00940000155272.lc	ENSGT00390000003465.b.a.g	ENSGT00550000074870.u.a.b.a.b	ENSGT00390000014398	ENSGT01030000234863.b.a	ENSGT00950000182872.f.a.b.p.e	ENSGT00940000158587.c.b.j	ENSGT00940000159104.c.d	ENSGT01030000234543.F.f.b #22	ENSGT00450000040303.r #23	ENSGT00390000000916.i	ENSGT00940000155783.i.a	ENSGT00940000157173.a	ENSGT00940000163607.a	ENSGT00390000013383.u.b	ENSGT00940000162490.b	ENSGT00940000155994.o.b	ENSGT00550000075032.a	ENSGT00940000164463	ENSGT00950000183176.b.f.o	ENSGT01030000234950.a	ENSGT00390000010285.c.kc	ENSGT00950000182986.a.b.b.n	ENSGT00390000009543.m
Goldfish	MODERN SPECIES	2943	ak2 (ENSCARG00000049036)	rnf19b (ENSCARG00000048933)	ndufs5 (ENSCARG00000048907)	MACF1 (ENSCARG00000042989)	bmp8a (ENSCARG00000042808)	zgc:91910 (ENSCARG00000042798)	ENSCARG00000042733	wdyhv1 (ENSCARG00000042702)	ENSCARG00000042678	ENSCARG00000042646	ENSCARG00000042632	ENSCARG00000042620	ndrg1a (ENSCARG00000042348)	ccn4a (ENSCARG00000042323)	sla1a (ENSCARG00000042307)	ctnnal1 (ENSCARG00000042055) #22	abitram (ENSCARG00000041983) #23	elp2 (ENSCARG00000041524)	gabbr2 (ENSCARG00000041154)	ENSCARG00000041131	ENSCARG00000041121
Cyprininae_a	ANCESTRAL SPECIES	119			ENSGT00390000008749.e.o	ENSGT00940000154576.lb.a	ENSGT00940000158451.a	ENSGT00390000002919	ENSGT00940000155824.C.ec.a	ENSGT00940000155272.lc	ENSGT00390000003465.b.a.g	ENSGT00550000074870.u.a.b.a.b	ENSGT00390000014398.q	ENSGT01030000234863.b.a	ENSGT00950000182872.f.a.b.p.e	ENSGT00940000158587.c.b.j	ENSGT00940000159104.c.d	ENSGT01030000234543.F.f.b #22	ENSGT00450000040303.r #23	ENSGT00390000000916.i	ENSGT00940000155783.i.a	ENSGT00940000157173.a	ENSGT00940000163607.a	ENSGT00390000013383.u.b	ENSGT00940000162490.b	ENSGT00940000155994.o.b	ENSGT00550000075032.a	ENSGT00940000164463	ENSGT00950000183176.b.f.o	ENSGT01030000234950.a	ENSGT00390000010285.c.kc	ENSGT00950000182986.a.b.b.n	ENSGT00390000009543.m
Common carp reference	MODERN SPECIES	31	trappc3 (ENSCCRG00000011564)	ENSCCRG00000073566	col8a2 (ENSCCRG00000071024)	ptp4a2b (ENSCCRG00000067835)	ENSCCRG00000048437	anln (ENSCCRG00000011436)	ak2 (ENSCCRG00000011378)	rnf19b (ENSCCRG00000079271)	ndufs5 (ENSCCRG00000011346)	ENSCCRG00000011284	ENSCCRG00000011242	wdyhv1 (ENSCCRG00000059656)	ndrg1a (ENSCCRG00000066791)	ccn4a (ENSCCRG00000082712)	sla1a (ENSCCRG00000009750)	ctnnal1 (ENSCCRG00000009325) #22	abitram (ENSCCRG00000009316) #23	elp2 (ENSCCRG00000009307)	gabbr2 (ENSCCRG00000058382)	ENSCCRG00000004723	poc1bl (ENSCCRG00000048657)	si:dkey-184p18.2 (ENSCCRG00000079262)	rp9 (ENSCCRG00000048663)	elmo1 (ENSCCRG00000005021)	pex1 (ENSCCRG00000050804)	ENSCCRG00000050815	runx1t1 (ENSCCRG00000004819)	ENSCCRG00000074327	cibar1 (ENSCCRG00000020373)	ENSCCRG00000020372	fam91a1 (ENSCCRG00000049964)
Golden-line barbel	MODERN SPECIES	565	anln (ENSSGRG00000052593)	ENSSGRG00000052591	AK2 (ENSSGRG00000052590)	ak2 (ENSSGRG00000052588)	rnf19b (ENSSGRG00000052586)	ndufs5 (ENSSGRG00000052585)	MACF1 (ENSSGRG00000052501)	bmp8a (ENSSGRG00000052485)	zgc:91910 (ENSSGRG00000052475)	PSMA2 (ENSSGRG00000052246)	wdyhv1 (ENSSGRG00000052234)	ENSSGRG00000052233	ndrg1a (ENSSGRG00000052137)	ccn4a (ENSSGRG00000052131)	sla1a (ENSSGRG00000052130)	ctnnal1 (ENSSGRG00000052128) #22	abitram (ENSSGRG00000052127) #23	elp2 (ENSSGRG00000052126)	ENSSGRG00000052124	gabbr2 (ENSSGRG00000052121)	GALNT12 (ENSSGRG00000052115)	poc1bl (ENSSGRG00000052110)	ENSSGRG00000052108	rp9 (ENSSGRG00000052107)	elmo1 (ENSSGRG00000051290)	pex1 (ENSSGRG00000051271)	ENSSGRG00000051270	runx1t1 (ENSSGRG00000050737)	ENSSGRG00000050725	cibar1 (ENSSGRG00000050724)	TRIB1 (ENSSGRG00000050723)
Elephant shark	MODERN SPECIES	1541	oxnad1 (ENSCMIG00000019055)	ENSCMIG00000019054	dazl (ENSCMIG00000019050)	PLCL2 (ENSCMIG00000019043)	tbc1d5 (ENSCMIG00000019001)	ENSCMIG00000018985	ENSCMIG00000018984	KCNH8 (ENSCMIG00000018981)	ENSCMIG00000018978	ENSCMIG00000018977	ENSCMIG00000018971	ENSCMIG00000018968	ENSCMIG00000018967	KAT2B (ENSCMIG00000018949)	ENSCMIG00000018938	ctnnal1 (ENSCMIG00000018930) #22	abitram (ENSCMIG00000018929) #23	ENSCMIG00000018927	ift57 (ENSCMIG00000018926)	ENSCMIG00000018864	CAVIN4 (ENSCMIG00000018828)	TMEFF1 (ENSCMIG00000018817)	ENSCMIG00000018790	dync1li1 (ENSCMIG00000018671)	ENSCMIG00000018639	cmtm7 (ENSCMIG00000018637)	cmtm8b (ENSCMIG00000018635)	gpd1l (ENSCMIG00000018634)	ENSCMIG00000018632	gatad1 (ENSCMIG00000018630)	ANKIB1 (ENSCMIG00000018549)
Cyclostomata	ANCESTRAL SPECIES	664																ENSGT01030000234543.F #22	ENSGT00940000156394.ab
Lamprey	MODERN SPECIES	455																ENSPMAG00000006389 #22	ENSPMAG00000006321	ENSPMAG00000006293
Hagfish	MODERN SPECIES	848															ENSEBUG00000009376	ENSEBUG00000005612 #22	ENSEBUG00000004352	ENSEBUG00000005237	ENSEBUG00000011864	ENSEBUG00000008523	ENSEBUG00000005657	ENSEBUG00000008031	ENSEBUG00000009074
Ciona	ANCESTRAL SPECIES																	ENSGT01030000234543.F #22
Ciona intestinalis	MODERN SPECIES	13	ENSCING00000013016	ENSCING00000013017	ENSCING00000013018	ENSCING00000023184	ENSCING00000006934	ENSCING00000025160	ENSCING00000006859	ENSCING00000006860	ENSCING00000018150	ENSCING00000006862	ENSCING00000013013	ENSCING00000013014	ENSCING00000022235	ENSCING00000006895	ENSCING00000006904	ENSCING00000006913 #22	ENSCING00000017493	ENSCING00000018470	ENSCING00000013010	ENSCING00000002675	ENSCING00000006848	ENSCING00000000302	ENSCING00000013011	ENSCING00000006849	ENSCING00000013012	ENSCING00000006850	ENSCING00000006852	ENSCING00000006853	ENSCING00000020854	ENSCING00000023977	ENSCING00000002665