Gnathostomata	DUPLICATION
Gnathostomata	ANCESTRAL SPECIES	362								ENSGT00940000156537 #14	ENSGT00390000013839 #15	ENSGT00940000158762 #16	ENSGT00740000116961	ENSGT00940000157379 #18	ENSGT00940000159853 #19	ENSGT00940000159695 #20	ENSGT00940000156010 #21	ENSGT00390000011620.a.a.b #22
Euteleostomi	ANCESTRAL SPECIES	530												ENSGT00940000157379 #18	ENSGT00940000159853 #19	ENSGT00940000159695 #20	ENSGT00940000156010 #21	ENSGT00390000011620.a.a.b #22	ENSGT00940000158073 #23	ENSGT00940000161589 #24
Sarcopterygii	ANCESTRAL SPECIES	230	ENSGT01100000263518.A.a.a.a #8	ENSGT01080000257410.C #9	ENSGT00940000160139 #10	ENSGT00530000063835.a #11	ENSGT00400000022086.b.b #12	ENSGT00390000017515 #13	ENSGT00940000156537 #14	ENSGT00390000013839 #15	ENSGT00940000158762 #16	ENSGT00940000161502 #17	ENSGT00740000116961	ENSGT00940000157379 #18	ENSGT00940000159853 #19	ENSGT00940000159695 #20	ENSGT00940000156010 #21	ENSGT00390000011620.a.a.b #22	ENSGT00940000158073 #23	ENSGT00940000161589 #24
Tetrapoda	ANCESTRAL SPECIES	19	ENSGT00390000007823 #7	ENSGT01100000263518.A.a.a.a #8	ENSGT01080000257410.C #9	ENSGT00940000160139 #10	ENSGT00530000063835.a #11	ENSGT00400000022086.b.b #12	ENSGT00390000017515 #13	ENSGT00940000156537 #14	ENSGT00390000013839 #15	ENSGT00940000158762 #16	ENSGT00940000161502 #17	ENSGT00940000157379 #18	ENSGT00940000159853 #19	ENSGT00940000159695 #20	ENSGT00940000156010 #21	ENSGT00390000011620.a.a.b #22	ENSGT00940000158073 #23	ENSGT00940000161589 #24	ENSGT00940000154543.a	ENSGT00940000161921	ENSGT00530000063859.b #25	ENSGT00940000157562 #26	ENSGT00950000183053.C #27	ENSGT00940000161664 #28	ENSGT00390000014827	ENSGT00940000158980	ENSGT00950000182810.A.a.a #29	ENSGT00960000187407	ENSGT00940000159809 #31	ENSGT00940000155569.a.a #32	ENSGT00390000001799 #33
Amniota	ANCESTRAL SPECIES	19	ENSGT01100000263518.A.a.a.a #8	ENSGT01080000257410.C #9	ENSGT00390000014718	ENSGT00940000160139 #10	ENSGT00530000063835.a #11	ENSGT00400000022086.b.b #12	ENSGT00390000017515.p ##13	ENSGT00940000156537 #14	ENSGT00390000013839 #15	ENSGT00940000158762 #16	ENSGT00940000161502 #17	ENSGT00940000157379 #18	ENSGT00940000159853 #19	ENSGT00940000159695 #20	ENSGT00940000156010 #21	ENSGT00390000011620.a.a.b #22	ENSGT00940000158073 #23	ENSGT00940000161589 #24	ENSGT00940000154543.a	ENSGT00940000161921	ENSGT00530000063859.b #25	ENSGT00940000157562 #26	ENSGT00950000183053.C #27	ENSGT00940000161664 #28	ENSGT00950000182810.A.a.a #29	ENSGT00390000015470 #30	ENSGT00940000159809 #31	ENSGT00940000155569.a.a #32	ENSGT00390000001799 #33	ENSGT01090000260114	ENSGT00940000156300 #35
Mammalia	ANCESTRAL SPECIES	15	ENSGT01100000263518.A.a.a.a #8	ENSGT01080000257410.C #9	ENSGT00390000014718	ENSGT00940000160139 #10	ENSGT00530000063835.a #11	ENSGT00400000022086.b.b #12	ENSGT00390000017515.p ##13	ENSGT00940000156537 #14	ENSGT00390000013839 #15	ENSGT00940000158762 #16	ENSGT00940000161502 #17	ENSGT00940000157379 #18	ENSGT00940000159853 #19	ENSGT00940000159695 #20	ENSGT00940000156010 #21	ENSGT00390000011620.a.a.b #22	ENSGT00940000158073 #23	ENSGT00940000161589 #24	ENSGT00940000154543.a	ENSGT00940000161921	ENSGT00530000063859.b #25	ENSGT00940000157562 #26	ENSGT00950000183053.C #27	ENSGT00940000161664 #28	ENSGT00950000182810.A.a.a #29	ENSGT00390000015470 #30	ENSGT00940000159809 #31	ENSGT00940000155569.a.a #32	ENSGT00390000001799 #33	ENSGT01090000260114	ENSGT00940000156300 #35
Theria	ANCESTRAL SPECIES	19	ENSGT01100000263518.A.a.a.a #8	ENSGT01080000257410.C #9	ENSGT00390000014718	ENSGT00940000160139 #10	ENSGT00530000063835.a #11	ENSGT00400000022086.b.b #12	ENSGT00390000017515.p ##13	ENSGT00940000156537 #14	ENSGT00390000013839 #15	ENSGT00940000158762 #16	ENSGT00940000161502 #17	ENSGT00940000157379 #18	ENSGT00940000159853 #19	ENSGT00940000159695 #20	ENSGT00940000156010 #21	ENSGT00390000011620.a.a.b #22	ENSGT00940000158073 #23	ENSGT00940000161589 #24	ENSGT00940000154543.a	ENSGT00940000161921	ENSGT00530000063859.b #25	ENSGT00940000157562 #26	ENSGT00950000183053.C #27	ENSGT00940000161664 #28	ENSGT00950000182810.A.a.a #29	ENSGT00390000015470 #30	ENSGT00940000159809 #31	ENSGT00940000155569.a.a #32	ENSGT00390000001799 #33	ENSGT01090000260114	ENSGT00940000156300 #35
Eutheria	ANCESTRAL SPECIES	11	ENSGT01100000263518.A.a.a.a #8	ENSGT01080000257410.C #9	ENSGT00390000014718	ENSGT00940000160139 #10	ENSGT00530000063835.a #11	ENSGT00400000022086.b.b #12	ENSGT00390000017515.p ##13	ENSGT00940000156537 #14	ENSGT00390000013839 #15	ENSGT00940000158762 #16	ENSGT00940000161502 #17	ENSGT00940000157379 #18	ENSGT00940000159853 #19	ENSGT00940000159695 #20	ENSGT00940000156010 #21	ENSGT00390000011620.a.a.b #22	ENSGT00940000158073 #23	ENSGT00940000161589 #24	ENSGT00940000154543.a	ENSGT00940000161921	ENSGT00530000063859.b #25	ENSGT00940000157562 #26	ENSGT00950000183053.C #27	ENSGT00940000161664 #28	ENSGT00950000182810.A.a.a #29	ENSGT00390000015470 #30	ENSGT00940000159809 #31	ENSGT00940000155569.a.a #32	ENSGT00390000001799 #33	ENSGT01090000260114	ENSGT00940000156300 #35
Boreoeutheria	ANCESTRAL SPECIES	17	ENSGT00390000014718	ENSGT01080000257410.C #9	ENSGT00960000192285	ENSGT00940000160139 #10	ENSGT00530000063835.a #11	ENSGT00400000022086.b.b #12	ENSGT00390000017515.o.b #13	ENSGT00940000156537 #14	ENSGT00390000013839 #15	ENSGT00940000158762 #16	ENSGT00940000161502 #17	ENSGT00940000157379 #18	ENSGT00940000159853 #19	ENSGT00940000159695 #20	ENSGT00940000156010 #21	ENSGT00390000011620.a.a.b #22	ENSGT00940000158073 #23	ENSGT00940000161589 #24	ENSGT00940000154543.a	ENSGT00940000161921	ENSGT00530000063859.b #25	ENSGT00940000157562 #26	ENSGT00950000183053.C #27	ENSGT00940000161664 #28	ENSGT00950000182810.A.a.a #29	ENSGT00390000015470 #30	ENSGT00940000159809 #31	ENSGT00940000155569.a.a #32	ENSGT00390000001799 #33	ENSGT01090000260114	ENSGT00940000156300.d #35
Euarchontoglires	ANCESTRAL SPECIES	17	ENSGT00390000014718	ENSGT01080000257410.C #9	ENSGT00960000192285	ENSGT00940000160139 #10	ENSGT00530000063835.a #11	ENSGT00400000022086.b.b #12	ENSGT00390000017515.o.b #13	ENSGT00940000156537 #14	ENSGT00390000013839 #15	ENSGT00940000158762 #16	ENSGT00940000161502 #17	ENSGT00940000157379 #18	ENSGT00940000159853 #19	ENSGT00940000159695 #20	ENSGT00940000156010 #21	ENSGT00390000011620.a.a.b #22	ENSGT00940000158073 #23	ENSGT00940000161589 #24	ENSGT00940000154543.a	ENSGT00940000161921	ENSGT00530000063859.b #25	ENSGT00940000157562 #26	ENSGT00950000183053.C #27	ENSGT00940000161664 #28	ENSGT00950000182810.A.a.a #29	ENSGT00390000015470 #30	ENSGT00940000159809 #31	ENSGT00940000155569.a.a #32	ENSGT00390000001799 #33	ENSGT01090000260114	ENSGT00940000156300.d #35
Primates	ANCESTRAL SPECIES	17	ENSGT01100000263518.A.a.a.a #8	ENSGT00390000014718	ENSGT01080000257410.C #9	ENSGT00940000160139 #10	ENSGT00530000063835.a #11	ENSGT00400000022086.b.b #12	ENSGT00390000017515.o.b #13	ENSGT00940000156537 #14	ENSGT00390000013839 #15	ENSGT00940000158762 #16	ENSGT00940000161502 #17	ENSGT00940000157379 #18	ENSGT00940000159853 #19	ENSGT00940000159695 #20	ENSGT00940000156010 #21	ENSGT00390000011620.a.a.b #22	ENSGT00940000158073 #23	ENSGT00940000161589 #24	ENSGT00940000154543.a	ENSGT00940000161921	ENSGT00530000063859.b #25	ENSGT00940000157562 #26	ENSGT00950000183053.C #27	ENSGT00940000161664 #28	ENSGT00950000182810.A.a.a #29	ENSGT00390000015470 #30	ENSGT00940000159809 #31	ENSGT00940000155569.a.a #32	ENSGT00390000001799 #33	ENSGT00940000156300.d #35	ENSGT01090000260114
Haplorrhini	ANCESTRAL SPECIES	13	ENSGT01100000263518.A.a.a.a #8	ENSGT00390000014718	ENSGT01080000257410.C #9	ENSGT00940000160139 #10	ENSGT00530000063835.a #11	ENSGT00400000022086.b.b #12	ENSGT00390000017515.o.b #13	ENSGT00940000156537 #14	ENSGT00390000013839 #15	ENSGT00940000158762 #16	ENSGT00940000161502 #17	ENSGT00940000157379 #18	ENSGT00940000159853 #19	ENSGT00940000159695 #20	ENSGT00940000156010 #21	ENSGT00390000011620.a.a.b #22	ENSGT00940000158073 #23	ENSGT00940000161589 #24	ENSGT00940000154543.a	ENSGT00940000161921	ENSGT00530000063859.b #25	ENSGT00940000157562 #26	ENSGT00950000183053.C #27	ENSGT00940000161664 #28	ENSGT00950000182810.A.a.a #29	ENSGT00390000015470 #30	ENSGT00940000159809 #31	ENSGT00940000155569.a.a #32	ENSGT00390000001799 #33	ENSGT00940000156300.d #35	ENSGT01090000260114
Simiiformes	ANCESTRAL SPECIES	18	ENSGT01100000263518.A.a.a.a #8	ENSGT00390000014718	ENSGT01080000257410.C #9	ENSGT00940000160139 #10	ENSGT00530000063835.a #11	ENSGT00400000022086.b.b #12	ENSGT00390000017515.o.b #13	ENSGT00940000156537 #14	ENSGT00390000013839 #15	ENSGT00940000158762 #16	ENSGT00940000161502 #17	ENSGT00940000157379 #18	ENSGT00940000159853 #19	ENSGT00940000159695 #20	ENSGT00940000156010 #21	ENSGT00390000011620.a.a.b #22	ENSGT00940000158073 #23	ENSGT00940000161589 #24	ENSGT00940000154543.a	ENSGT00940000161921	ENSGT00530000063859.b #25	ENSGT00940000157562 #26	ENSGT00950000183053.C #27	ENSGT00940000161664 #28	ENSGT00950000182810.A.a.a.lb #29	ENSGT00390000015470 #30	ENSGT00940000159809 #31	ENSGT00940000155569.a.a #32	ENSGT00390000001799 #33	ENSGT00940000156300.d #35	ENSGT01090000260114
Platyrrhini	ANCESTRAL SPECIES	11	ENSGT00390000007823 #7	ENSGT01100000263518.A.a.a.a #8	ENSGT01080000257410.C #9	ENSGT00940000160139 #10	ENSGT00530000063835.a #11	ENSGT00400000022086.b.b #12	ENSGT00390000017515.o.b #13	ENSGT00940000156537 #14	ENSGT00390000013839 #15	ENSGT00940000158762 #16	ENSGT00940000161502 #17	ENSGT00940000157379 #18	ENSGT00940000159853 #19	ENSGT00940000159695 #20	ENSGT00940000156010 #21	ENSGT00390000011620.a.a.b #22	ENSGT00940000158073 #23	ENSGT00940000168632	ENSGT00940000154543.a	ENSGT00940000161921	ENSGT00530000063859.b #25	ENSGT00940000157562 #26	ENSGT00950000183053.C #27	ENSGT00940000161664 #28	ENSGT00950000182810.A.a.a.lb.a #29	ENSGT00390000015470 #30	ENSGT00940000159809 #31	ENSGT00940000155569.a.a #32	ENSGT00390000001799 #33	ENSGT00940000156300.d.k.a #35	ENSGT00390000006634 #36
Cebidae	ANCESTRAL SPECIES	13	ENSGT00390000007823 #7	ENSGT01100000263518.A.a.a.a #8	ENSGT01080000257410.C #9	ENSGT00940000160139 #10	ENSGT00530000063835.a #11	ENSGT00400000022086.b.b #12	ENSGT00390000017515.o.b #13	ENSGT00940000156537 #14	ENSGT00390000013839 #15	ENSGT00940000158762 #16	ENSGT00940000161502 #17	ENSGT00940000157379 #18	ENSGT00940000159853 #19	ENSGT00940000159695 #20	ENSGT00940000156010 #21	ENSGT00390000011620.a.a.b #22	ENSGT00940000158073 #23	ENSGT00940000168632	ENSGT00940000154543.a	ENSGT00940000161921	ENSGT00530000063859.b #25	ENSGT00940000157562 #26	ENSGT00950000183053.C #27	ENSGT00940000161664 #28	ENSGT00950000182810.A.a.a.lb.a #29	ENSGT00390000015470 #30	ENSGT00940000159809 #31	ENSGT00940000155569.a.a #32	ENSGT00390000001799 #33	ENSGT00940000156300.d.k.a #35	ENSGT00390000006634 #36
Cebidae_a	ANCESTRAL SPECIES	2	ENSGT00390000007823 #7	ENSGT01100000263518.A.a.a.a #8	ENSGT01080000257410.C #9	ENSGT00940000160139 #10	ENSGT00530000063835.a #11	ENSGT00400000022086.b.b #12	ENSGT00390000017515.o.b #13	ENSGT00940000156537 #14	ENSGT00390000013839 #15	ENSGT00940000158762 #16	ENSGT00940000161502 #17	ENSGT00940000157379 #18	ENSGT00940000159853 #19	ENSGT00940000159695 #20	ENSGT00940000156010 #21	ENSGT00390000011620.a.a.b #22	ENSGT00940000158073 #23	ENSGT00940000161589 #24	ENSGT00530000063859.b #25	ENSGT00940000157562 #26	ENSGT00950000183053.C #27	ENSGT00940000161664 #28	ENSGT00950000182810.A.a.a.lb.a #29	ENSGT00390000015470 #30	ENSGT00940000159809 #31	ENSGT00940000155569.a.a #32	ENSGT00390000001799 #33	ENSGT00940000156300.d.k.a #35	ENSGT00390000006634 #36	ENSGT00530000063255.A	ENSGT00910000148824
Capuchin	MODERN SPECIES	311	ENSCCAG00000034861 #7	NTSR1 (ENSCCAG00000014565) #8	SLCO4A1 (ENSCCAG00000020112) #9	GATA5 (ENSCCAG00000015339) #10	RBBP8NL (ENSCCAG00000030370) #11	CABLES2 (ENSCCAG00000029965) #12	ENSCCAG00000036700 #13	LAMA5 (ENSCCAG00000021643) #14	ADRM1 (ENSCCAG00000027146) #15	OSBPL2 (ENSCCAG00000035550) #16	HRH3 (ENSCCAG00000033589) #17	MTG2 (ENSCCAG00000035332) #18	SS18L1 (ENSCCAG00000034514) #19	PSMA7 (ENSCCAG00000019388) #20	LSM14B (ENSCCAG00000021267) #21	TAF4 (ENSCCAG00000020328) #22	CDH4 (ENSCCAG00000022146) #23	CDH26 (ENSCCAG00000020268) #24	SYCP2 (ENSCCAG00000016906) #25	PHACTR3 (ENSCCAG00000030544) #26	EDN3 (ENSCCAG00000029067) #27	ZNF831 (ENSCCAG00000018807) #28	PRELID3B (ENSCCAG00000027593) #29	ATP5F1E (ENSCCAG00000019746) #30	TUBB1 (ENSCCAG00000023136) #31	CTSZ (ENSCCAG00000023398) #32	NELFCD (ENSCCAG00000033432) #33	ENSCCAG00000025793 #34	ENSCCAG00000020784 #35	ENSCCAG00000030335 #36
Bolivian squirrel monkey	MODERN SPECIES	93	ENSSBOG00000023786 #7	NTSR1 (ENSSBOG00000001221) #8	SLCO4A1 (ENSSBOG00000030164) #9	GATA5 (ENSSBOG00000034203) #10	RBBP8NL (ENSSBOG00000028400) #11	CABLES2 (ENSSBOG00000032273) #12	RPS21 (ENSSBOG00000021410) #13	LAMA5 (ENSSBOG00000032418) #14	ADRM1 (ENSSBOG00000026290) #15	OSBPL2 (ENSSBOG00000021294) #16	HRH3 (ENSSBOG00000032318) #17	MTG2 (ENSSBOG00000029055) #18	SS18L1 (ENSSBOG00000021541) #19	PSMA7 (ENSSBOG00000030036) #20	LSM14B (ENSSBOG00000032820) #21	TAF4 (ENSSBOG00000017534) #22	CDH4 (ENSSBOG00000028115) #23	ENSSBOG00000014792	SYCP2 (ENSSBOG00000030028) #25	ENSSBOG00000027818 #26	EDN3 (ENSSBOG00000024971) #27	ZNF831 (ENSSBOG00000031251) #28	PRELID3B (ENSSBOG00000019233) #29	ATP5F1E (ENSSBOG00000032643) #30	TUBB1 (ENSSBOG00000031264) #31	CTSZ (ENSSBOG00000029319) #32	NELFCD (ENSSBOG00000024245) #33	ENSSBOG00000032092 #35	ENSSBOG00000013127 #36	NPEPL1 (ENSSBOG00000002808)	STX16 (ENSSBOG00000035326)
Marmoset	MODERN SPECIES	17	OGFR (ENSCJAG00000043786)	MRGBP (ENSCJAG00000041703) #7	NTSR1 (ENSCJAG00000041245) #8	SLCO4A1 (ENSCJAG00000009785) #9	RBBP8NL (ENSCJAG00000014173) #11	CABLES2 (ENSCJAG00000014189) #12	ENSCJAG00000014195 ##13	ENSCJAG00000074394 #14	ENSCJAG00000014274 #15	OSBPL2 (ENSCJAG00000014300) #16	HRH3 (ENSCJAG00000048407) #17	MTG2 (ENSCJAG00000014360) #18	SS18L1 (ENSCJAG00000014377) #19	PSMA7 (ENSCJAG00000014419) #20	LSM14B (ENSCJAG00000014434) #21	TAF4 (ENSCJAG00000014438) #22	ENSCJAG00000072353	CDH4 (ENSCJAG00000042612) #23	FAM217B (ENSCJAG00000018823)	PPP1R3D (ENSCJAG00000018830)	SYCP2 (ENSCJAG00000018836) #25	ENSCJAG00000087087	PHACTR3 (ENSCJAG00000045721) #26	EDN3 (ENSCJAG00000018885) #27	ZNF831 (ENSCJAG00000047641) #28	ENSCJAG00000085698	ENSCJAG00000048161 ##29	ENSCJAG00000073740 #30	TUBB1 (ENSCJAG00000018914) #31	CTSZ (ENSCJAG00000018918) #32	NELFCD (ENSCJAG00000018927) #33
Mas night monkey	MODERN SPECIES	628	ENSANAG00000020630 #7	NTSR1 (ENSANAG00000028125) #8	SLCO4A1 (ENSANAG00000025751) #9	GATA5 (ENSANAG00000032190) #10	RBBP8NL (ENSANAG00000026519) #11	CABLES2 (ENSANAG00000032007) #12	RPS21 (ENSANAG00000026964) #13	LAMA5 (ENSANAG00000030209) #14	ENSANAG00000022779 #15	OSBPL2 (ENSANAG00000000648) #16	HRH3 (ENSANAG00000037989) #17	MTG2 (ENSANAG00000038077) #18	SS18L1 (ENSANAG00000037732) #19	PSMA7 (ENSANAG00000010130) #20	LSM14B (ENSANAG00000037915) #21	TAF4 (ENSANAG00000025843) #22	CDH4 (ENSANAG00000021592) #23
Catarrhini	ANCESTRAL SPECIES	19	ENSGT01100000263518.A.a.a.a #8	ENSGT00390000014718	ENSGT01080000257410.C #9	ENSGT00940000160139 #10	ENSGT00530000063835.a #11	ENSGT00400000022086.b.b #12	ENSGT00390000017515.o.b #13	ENSGT00940000156537 #14	ENSGT00390000013839 #15	ENSGT00940000158762 #16	ENSGT00940000161502 #17	ENSGT00940000157379 #18	ENSGT00940000159853 #19	ENSGT00940000159695 #20	ENSGT00940000156010 #21	ENSGT00390000011620.a.a.b #22	ENSGT00940000158073 #23	ENSGT00910000147450	ENSGT00940000161589 #24	ENSGT00940000154543.a	ENSGT00940000161921	ENSGT00530000063859.b #25	ENSGT00940000157562 #26	ENSGT00950000183053.C #27	ENSGT00940000161664 #28	ENSGT00950000182810.A.a.a.lb #29	ENSGT00390000015470 #30	ENSGT00940000159809 #31	ENSGT00940000155569.a.a #32	ENSGT00390000001799 #33	ENSGT00940000156300.d #35
Hominoidea	ANCESTRAL SPECIES	17	ENSGT00940000160139 #10	ENSGT00910000147787	ENSGT00530000063835.a #11	ENSGT00400000022086.b.b #12	ENSGT00390000017515.p ##13	ENSGT00910000148312	ENSGT00390000017515.o.b #13	ENSGT00940000156537 #14	ENSGT00390000013839 #15	ENSGT00940000158762 #16	ENSGT00940000161502 #17	ENSGT00940000157379 #18	ENSGT00940000159853 #19	ENSGT00940000159695 #20	ENSGT00940000156010 #21	ENSGT00390000011620.a.a.b #22	ENSGT00940000158073 #23	ENSGT00910000147450	ENSGT00940000161589 #24	ENSGT00940000154543.a	ENSGT00940000161921	ENSGT00530000063859.b #25	ENSGT00940000157562 #26	ENSGT00950000183053.C #27	ENSGT00940000161664 #28	ENSGT00390000014309.n	ENSGT00950000182810.A.a.a.lb #29	ENSGT00390000015470 #30	ENSGT00940000159809 #31	ENSGT00940000155569.a.a #32	ENSGT00390000001799 #33
Hominidae	ANCESTRAL SPECIES	18	ENSGT00940000160139 #10	ENSGT00910000147787	ENSGT00530000063835.a #11	ENSGT00400000022086.b.b #12	ENSGT00390000017515.p ##13	ENSGT00910000148312	ENSGT00390000017515.o.b #13	ENSGT00940000156537 #14	ENSGT00390000013839 #15	ENSGT00940000158762 #16	ENSGT00940000161502 #17	ENSGT00940000157379 #18	ENSGT00940000159853 #19	ENSGT00940000159695 #20	ENSGT00940000156010 #21	ENSGT00390000011620.a.a.b #22	ENSGT00940000158073 #23	ENSGT00910000147450	ENSGT00940000161589 #24	ENSGT00940000154543.a	ENSGT00940000161921	ENSGT00530000063859.b #25	ENSGT00940000157562 #26	ENSGT00950000183053.C #27	ENSGT00940000161664 #28	ENSGT00390000014309.n	ENSGT00950000182810.A.a.a.lb #29	ENSGT00390000015470.z.a #30	ENSGT00940000159809 #31	ENSGT00940000155569.a.a #32	ENSGT00390000001799 #33
Homo/Pan/Gorilla group	ANCESTRAL SPECIES	16	ENSGT01080000257410.C #9	ENSGT00940000160139 #10	ENSGT00910000147787	ENSGT00530000063835.a #11	ENSGT00400000022086.b.b #12	ENSGT00390000017515.p ##13	ENSGT00910000148312	ENSGT00940000156537 #14	ENSGT00390000013839 #15	ENSGT00940000158762 #16	ENSGT00940000161502 #17	ENSGT00940000157379 #18	ENSGT00940000159853 #19	ENSGT00940000159695 #20	ENSGT00940000156010 #21	ENSGT00390000011620.a.a.b #22	ENSGT00940000158073 #23	ENSGT00910000147450	ENSGT00940000161589 #24	ENSGT00940000154543.a	ENSGT00940000161921	ENSGT00530000063859.b #25	ENSGT00940000157562 #26	ENSGT00950000183053.C #27	ENSGT00940000161664 #28	ENSGT00390000014309.n	ENSGT00950000182810.A.a.a.lb #29	ENSGT00390000015470.z.a #30	ENSGT00940000159809 #31	ENSGT00940000155569.a.a #32	ENSGT00390000001799 #33
Homo/Pan group	ANCESTRAL SPECIES	17	ENSGT01080000257410.C #9	ENSGT00940000160139 #10	ENSGT00910000147787	ENSGT00530000063835.a #11	ENSGT00400000022086.b.b #12	ENSGT00390000017515.p ##13	ENSGT00910000148312	ENSGT00940000156537 #14	ENSGT00390000013839 #15	ENSGT00940000158762 #16	ENSGT00940000161502 #17	ENSGT00940000157379 #18	ENSGT00940000159853 #19	ENSGT00940000159695 #20	ENSGT00940000156010 #21	ENSGT00390000011620.a.a.b #22	ENSGT00940000158073 #23	ENSGT00910000147450	ENSGT00940000161589 #24	ENSGT00940000154543.a	ENSGT00940000161921	ENSGT00530000063859.b #25	ENSGT00940000157562 #26	ENSGT00950000183053.C #27	ENSGT00940000161664 #28	ENSGT00390000014309.n	ENSGT00950000182810.A.a.a.lb #29	ENSGT00390000015470.z.a #30	ENSGT00940000159809 #31	ENSGT00940000155569.a.a #32	ENSGT00390000001799 #33
Pan	DUPLICATION
Pan	ANCESTRAL SPECIES	15	ENSGT01080000257410.C #9	ENSGT00940000160139 #10	ENSGT00910000147787	ENSGT00530000063835.a #11	ENSGT00400000022086.b.b #12	ENSGT00390000017515.p ##13	ENSGT00910000148312	ENSGT00940000156537 #14	ENSGT00390000013839 #15	ENSGT00940000158762 #16	ENSGT00940000161502 #17	ENSGT00940000157379 #18	ENSGT00940000159853 #19	ENSGT00940000159695 #20	ENSGT00940000156010 #21	ENSGT00390000011620.a.a.b.c #22	ENSGT00940000158073 #23	ENSGT00910000147450	ENSGT00940000161589 #24	ENSGT00940000154543.a	ENSGT00940000161921	ENSGT00530000063859.b #25	ENSGT00940000157562 #26	ENSGT00950000183053.C #27	ENSGT00940000161664 #28	ENSGT00390000014309.n	ENSGT00950000182810.A.a.a.lb #29	ENSGT00390000015470.z.a #30	ENSGT00940000159809 #31	ENSGT00940000155569.a.a #32	ENSGT00390000001799 #33
Chimpanzee	MODERN SPECIES	789																ENSPTRG00000045525 #22
Bonobo	MODERN SPECIES	11	SLCO4A1 (ENSPPAG00000040142) #9	GATA5 (ENSPPAG00000033487) #10	ENSPPAG00000013876	RBBP8NL (ENSPPAG00000020970) #11	ENSPPAG00000041254 #12	ENSPPAG00000043545 ##13	ENSPPAG00000014667	LAMA5 (ENSPPAG00000030723) #14	ADRM1 (ENSPPAG00000025509) #15	OSBPL2 (ENSPPAG00000013340) #16	HRH3 (ENSPPAG00000025470) #17	MTG2 (ENSPPAG00000042468) #18	SS18L1 (ENSPPAG00000035700) #19	PSMA7 (ENSPPAG00000026506) #20	LSM14B (ENSPPAG00000035799) #21	ENSPPAG00000028916 #22	CDH4 (ENSPPAG00000031709) #23	ENSPPAG00000026709	CDH26 (ENSPPAG00000036425) #24	FAM217B (ENSPPAG00000018830)	SYCP2 (ENSPPAG00000031071) #25	PHACTR3 (ENSPPAG00000037635) #26	EDN3 (ENSPPAG00000035671) #27	ZNF831 (ENSPPAG00000034101) #28	PRELID3B (ENSPPAG00000027568) #29	ATP5F1E (ENSPPAG00000017445) #30	TUBB1 (ENSPPAG00000006799) #31	CTSZ (ENSPPAG00000043518) #32	NELFCD (ENSPPAG00000042809) #33	ENSPPAG00000032982 #35	ENSPPAG00000033296 #36
Pan	ANCESTRAL SPECIES																	ENSGT00390000011620.a.a.b.d #22
Chimpanzee	MODERN SPECIES	11	SLCO4A1 (ENSPTRG00000013715) #9	GATA5 (ENSPTRG00000013711) #10	ENSPTRG00000045349	RBBP8NL (ENSPTRG00000013710) #11	CABLES2 (ENSPTRG00000013709) #12	ENSPTRG00000013708 ##13	ENSPTRG00000052490	ENSPTRG00000049805 #14	ADRM1 (ENSPTRG00000013704) #15	OSBPL2 (ENSPTRG00000013703) #16	HRH3 (ENSPTRG00000013702) #17	MTG2 (ENSPTRG00000013701) #18	SS18L1 (ENSPTRG00000013700) #19	PSMA7 (ENSPTRG00000013699) #20	LSM14B (ENSPTRG00000013696) #21	TAF4 (ENSPTRG00000013695) #22	CDH4 (ENSPTRG00000013693) #23	ENSPTRG00000051090	CDH26 (ENSPTRG00000013690) #24	FAM217B (ENSPTRG00000052443)	PPP1R3D (ENSPTRG00000049506)	SYCP2 (ENSPTRG00000013687) #25	PHACTR3 (ENSPTRG00000013686) #26	EDN3 (ENSPTRG00000013684) #27	ZNF831 (ENSPTRG00000013683) #28	ENSPTRG00000044912	PRELID3B (ENSPTRG00000013682) #29	ATP5F1E (ENSPTRG00000013681) #30	TUBB1 (ENSPTRG00000013680) #31	CTSZ (ENSPTRG00000013679) #32	NELFCD (ENSPTRG00000013678) #33
Human	MODERN SPECIES	12	MRGBP (ENSG00000101189) #7	NTSR1 (ENSG00000101188) #8	SLCO4A1 (ENSG00000101187) #9	GATA5 (ENSG00000130700) #10	RBBP8NL (ENSG00000130701) #11	CABLES2 (ENSG00000149679) #12	RPS21 (ENSG00000171858) #13	LAMA5 (ENSG00000130702) #14	ADRM1 (ENSG00000130706) #15	OSBPL2 (ENSG00000130703) #16	HRH3 (ENSG00000101180) #17	MTG2 (ENSG00000101181) #18	SS18L1 (ENSG00000184402) #19	PSMA7 (ENSG00000101182) #20	LSM14B (ENSG00000149657) #21	TAF4 (ENSG00000130699) #22	CDH4 (ENSG00000179242) #23	CDH26 (ENSG00000124215) #24	PPP1R3D (ENSG00000132825)	FAM217B (ENSG00000196227)	SYCP2 (ENSG00000196074) #25	PHACTR3 (ENSG00000087495) #26	EDN3 (ENSG00000124205) #27	ZNF831 (ENSG00000124203) #28	PRELID3B (ENSG00000101166) #29	ATP5F1E (ENSG00000124172) #30	TUBB1 (ENSG00000101162) #31	CTSZ (ENSG00000101160) #32	NELFCD (ENSG00000101158) #33	GNAS (ENSG00000087460) #35	NPEPL1 (ENSG00000215440)
Gorilla	MODERN SPECIES	11	ENSGGOG00000042804	SLCO4A1 (ENSGGOG00000007516) #9	GATA5 (ENSGGOG00000000120) #10	ENSGGOG00000043681	RBBP8NL (ENSGGOG00000000119) #11	CABLES2 (ENSGGOG00000000117) #12	ENSGGOG00000023745 ##13	LAMA5 (ENSGGOG00000008462) #14	ADRM1 (ENSGGOG00000008457) #15	OSBPL2 (ENSGGOG00000008445) #16	HRH3 (ENSGGOG00000005654) #17	MTG2 (ENSGGOG00000005648) #18	SS18L1 (ENSGGOG00000005638) #19	PSMA7 (ENSGGOG00000005634) #20	LSM14B (ENSGGOG00000005630) #21	ENSGGOG00000002111 #22	CDH4 (ENSGGOG00000000182) #23	ENSGGOG00000036542	ENSGGOG00000012463 #24	ENSGGOG00000038222 #24	FAM217B (ENSGGOG00000043885)	SYCP2 (ENSGGOG00000010064) #25	PHACTR3 (ENSGGOG00000014774) #26	EDN3 (ENSGGOG00000012885) #27	ZNF831 (ENSGGOG00000016623) #28	PRELID3B (ENSGGOG00000004803) #29	ATP5F1E (ENSGGOG00000016625) #30	TUBB1 (ENSGGOG00000016621) #31	CTSZ (ENSGGOG00000016618) #32	NELFCD (ENSGGOG00000006713) #33	ENSGGOG00000002843 #35
Orangutan	MODERN SPECIES	11	COL9A3 (ENSPPYG00000037415)	ENSPPYG00000011218	ENSPPYG00000011217 #7	NTSR1 (ENSPPYG00000011216) #8	SLCO4A1 (ENSPPYG00000011213) #9	GATA5 (ENSPPYG00000011208) #10	RBBP8NL (ENSPPYG00000011207) #11	CABLES2 (ENSPPYG00000011206) #12	ENSPPYG00000011205 ##13	OSBPL2 (ENSPPYG00000011201) #16	HRH3 (ENSPPYG00000011199) #17	MTG2 (ENSPPYG00000011198) #18	SS18L1 (ENSPPYG00000011197) #19	PSMA7 (ENSPPYG00000034580) #20	LSM14B (ENSPPYG00000011194) #21	TAF4 (ENSPPYG00000029916) #22	CDH4 (ENSPPYG00000011193) #23	CDH26 (ENSPPYG00000011189) #24	FAM217B (ENSPPYG00000011188)	PPP1R3D (ENSPPYG00000011187)	SYCP2 (ENSPPYG00000011186) #25	PHACTR3 (ENSPPYG00000011185) #26	EDN3 (ENSPPYG00000011184) #27	ZNF831 (ENSPPYG00000011183) #28	TUBB1 (ENSPPYG00000011180) #31	CTSZ (ENSPPYG00000011179) #32	NELFCD (ENSPPYG00000011178) #33	ENSPPYG00000034786 #36	ENSPPYG00000011177 #35	NPEPL1 (ENSPPYG00000011176)	STX16 (ENSPPYG00000011175)
Gibbon	MODERN SPECIES	3	ENSNLEG00000031811	GATA5 (ENSNLEG00000015926) #10	ENSNLEG00000034192	RBBP8NL (ENSNLEG00000015942) #11	CABLES2 (ENSNLEG00000015932) #12	ENSNLEG00000028252 ##13	ENSNLEG00000027234	LAMA5 (ENSNLEG00000028345) #14	ADRM1 (ENSNLEG00000015858) #15	OSBPL2 (ENSNLEG00000015814) #16	HRH3 (ENSNLEG00000026621) #17	MTG2 (ENSNLEG00000015799) #18	ENSNLEG00000015795 #19	PSMA7 (ENSNLEG00000015772) #20	LSM14B (ENSNLEG00000015757) #21	TAF4 (ENSNLEG00000015722) #22	CDH4 (ENSNLEG00000015745) #23	ENSNLEG00000034131	ENSNLEG00000031666	FAM217B (ENSNLEG00000032511)	PPP1R3D (ENSNLEG00000018277)	SYCP2 (ENSNLEG00000009617) #25	PHACTR3 (ENSNLEG00000009596) #26	EDN3 (ENSNLEG00000032826) #27	ZNF831 (ENSNLEG00000009590) #28	ENSNLEG00000029922	PRELID3B (ENSNLEG00000009579) #29	ATP5F1E (ENSNLEG00000018656) #30	TUBB1 (ENSNLEG00000009571) #31	CTSZ (ENSNLEG00000009558) #32	NELFCD (ENSNLEG00000009524) #33
Cercopithecidae	ANCESTRAL SPECIES	16	ENSGT00390000014718	ENSGT01080000257410.C #9	ENSGT00940000160139 #10	ENSGT00530000063835.a #11	ENSGT00400000022086.b.b #12	ENSGT00390000017515.o.b #13	ENSGT00940000156537 #14	ENSGT00390000013839 #15	ENSGT00910000148025	ENSGT00940000158762 #16	ENSGT00940000161502 #17	ENSGT00940000157379 #18	ENSGT00940000159853 #19	ENSGT00940000159695 #20	ENSGT00940000156010 #21	ENSGT00390000011620.a.a.b #22	ENSGT00940000158073 #23	ENSGT00910000147450	ENSGT00940000161589 #24	ENSGT00940000154543.a	ENSGT00940000161921	ENSGT00530000063859.b #25	ENSGT00940000157562 #26	ENSGT00950000183053.C #27	ENSGT00940000161664 #28	ENSGT00950000182810.A.a.a.lb #29	ENSGT00390000015470 #30	ENSGT00940000159809 #31	ENSGT00940000155569.a.a #32	ENSGT00390000001799 #33	ENSGT00940000156300.d #35
Cercopithecinae	ANCESTRAL SPECIES	19	ENSGT00390000014718	ENSGT01080000257410.C #9	ENSGT00940000160139 #10	ENSGT00530000063835.a #11	ENSGT00400000022086.b.b #12	ENSGT00390000017515.o.b #13	ENSGT00940000156537 #14	ENSGT00390000013839 #15	ENSGT00910000148025	ENSGT00940000158762 #16	ENSGT00940000161502 #17	ENSGT00940000157379 #18	ENSGT00940000159853 #19	ENSGT00940000159695 #20	ENSGT00940000156010 #21	ENSGT00390000011620.a.a.b #22	ENSGT00940000158073 #23	ENSGT00910000147450	ENSGT00940000161589 #24	ENSGT00940000154543.a	ENSGT00940000161921	ENSGT00530000063859.b #25	ENSGT00940000157562 #26	ENSGT00950000183053.C #27	ENSGT00940000161664 #28	ENSGT00950000182810.A.a.a.lb #29	ENSGT00390000015470 #30	ENSGT00940000159809 #31	ENSGT00940000155569.a.a #32	ENSGT00390000001799 #33	ENSGT00940000156300.d #35
Vervet Monkey	MODERN SPECIES	11	NTSR1 (ENSCSAG00000016088) #8	SLCO4A1 (ENSCSAG00000016079) #9	ENSCSAG00000016074	GATA5 (ENSCSAG00000016070) #10	RBBP8NL (ENSCSAG00000016058) #11	CABLES2 (ENSCSAG00000016030) #12	RPS21 (ENSCSAG00000016013) #13	LAMA5 (ENSCSAG00000015940) #14	ADRM1 (ENSCSAG00000015796) #15	OSBPL2 (ENSCSAG00000015788) #16	HRH3 (ENSCSAG00000015781) #17	MTG2 (ENSCSAG00000015774) #18	SS18L1 (ENSCSAG00000015769) #19	PSMA7 (ENSCSAG00000015753) #20	LSM14B (ENSCSAG00000015729) #21	TAF4 (ENSCSAG00000015714) #22	CDH4 (ENSCSAG00000015698) #23	ENSCSAG00000015691	ENSCSAG00000015686 #24	PPP1R3D (ENSCSAG00000018738)	SYCP2 (ENSCSAG00000015657) #25	PHACTR3 (ENSCSAG00000015613) #26	EDN3 (ENSCSAG00000015608) #27	ZNF831 (ENSCSAG00000015605) #28	ATP5F1E (ENSCSAG00000015600) #30	TUBB1 (ENSCSAG00000015595) #31	CTSZ (ENSCSAG00000015592) #32	NELFCD (ENSCSAG00000015585) #33	GNAS (ENSCSAG00000015577) #35	ENSCSAG00000018739 #36	NPEPL1 (ENSCSAG00000015570)
Cercopithecinae_a	ANCESTRAL SPECIES	18	ENSGT00390000014718	ENSGT01080000257410.C #9	ENSGT00940000160139 #10	ENSGT00530000063835.a #11	ENSGT00400000022086.b.b #12	ENSGT00390000017515.o.b #13	ENSGT00940000156537 #14	ENSGT00390000013839 #15	ENSGT00910000148025	ENSGT00940000158762 #16	ENSGT00940000161502 #17	ENSGT00940000157379 #18	ENSGT00940000159853 #19	ENSGT00940000159695 #20	ENSGT00940000156010 #21	ENSGT00390000011620.a.a.b #22	ENSGT00940000158073 #23	ENSGT00910000147450	ENSGT00940000161589 #24	ENSGT00940000154543.a	ENSGT00940000161921	ENSGT00530000063859.b #25	ENSGT00940000157562 #26	ENSGT00950000183053.C #27	ENSGT00940000161664 #28	ENSGT00950000182810.A.a.a.lb.c #29	ENSGT00390000015470 #30	ENSGT00940000159809 #31	ENSGT00940000155569.a.a #32	ENSGT00390000001799 #33	ENSGT00940000156300.d #35
Cercopithecinae_b	ANCESTRAL SPECIES	12	ENSGT00390000014718	ENSGT01080000257410.C #9	ENSGT00940000160139 #10	ENSGT00530000063835.a #11	ENSGT00400000022086.b.b #12	ENSGT00390000017515.o.b #13	ENSGT00940000156537 #14	ENSGT00390000013839 #15	ENSGT00910000148025	ENSGT00940000158762 #16	ENSGT00940000161502 #17	ENSGT00940000157379 #18	ENSGT00940000159853 #19	ENSGT00940000159695 #20	ENSGT00940000156010 #21	ENSGT00390000011620.a.a.b #22	ENSGT00940000158073 #23	ENSGT00940000161589 #24	ENSGT00940000154543.a	ENSGT00940000161921	ENSGT00530000063859.b #25	ENSGT00940000157562 #26	ENSGT00950000183053.C #27	ENSGT00940000161664 #28	ENSGT00950000182810.A.a.a.lb.c #29	ENSGT00390000015470 #30	ENSGT00940000159809 #31	ENSGT00940000155569.a.a #32	ENSGT00390000001799 #33	ENSGT00940000156300.d #35	ENSGT00390000006634 #36
Olive baboon	MODERN SPECIES	7	MRGBP (ENSPANG00000043588) #7	NTSR1 (ENSPANG00000014255) #8	ENSPANG00000030177	SLCO4A1 (ENSPANG00000014254) #9	GATA5 (ENSPANG00000035220) #10	RBBP8NL (ENSPANG00000018571) #11	CABLES2 (ENSPANG00000018573) #12	ENSPANG00000021054 ##13	ADRM1 (ENSPANG00000021463) #15	OSBPL2 (ENSPANG00000011171) #16	HRH3 (ENSPANG00000011170) #17	MTG2 (ENSPANG00000024124) #18	ENSPANG00000040229 #19	PSMA7 (ENSPANG00000020513) #20	LSM14B (ENSPANG00000011747) #21	TAF4 (ENSPANG00000022570) #22	CDH4 (ENSPANG00000011746) #23	CDH26 (ENSPANG00000021462) #24	FAM217B (ENSPANG00000015362)	PPP1R3D (ENSPANG00000018275)	SYCP2 (ENSPANG00000020632) #25	PHACTR3 (ENSPANG00000020631) #26	EDN3 (ENSPANG00000000369) #27	ZNF831 (ENSPANG00000000370) #28	ENSPANG00000049124 #29	ATP5F1E (ENSPANG00000048306) #30	TUBB1 (ENSPANG00000019323) #31	CTSZ (ENSPANG00000020630) #32	NELFCD (ENSPANG00000011168) #33	GNAS (ENSPANG00000020508) #35	ENSPANG00000043768
Cercopithecinae_d	ANCESTRAL SPECIES	47	ENSGT00390000014718	ENSGT01080000257410.C #9	ENSGT00940000160139 #10	ENSGT00530000063835.a #11	ENSGT00400000022086.b.b #12	ENSGT00390000017515.o.b #13	ENSGT00940000156537 #14	ENSGT00390000013839 #15	ENSGT00910000148025	ENSGT00940000158762 #16	ENSGT00940000161502 #17	ENSGT00940000157379 #18	ENSGT00940000159853 #19	ENSGT00940000159695 #20	ENSGT00940000156010 #21	ENSGT00390000011620.a.a.b #22	ENSGT00940000158073 #23	ENSGT00940000161589 #24	ENSGT00940000154543.a	ENSGT00940000161921	ENSGT00530000063859.b #25	ENSGT00940000157562 #26	ENSGT00950000183053.C #27	ENSGT00940000161664 #28	ENSGT00950000182810.A.a.a.lb.c #29	ENSGT00390000015470 #30	ENSGT00940000159809 #31	ENSGT00940000155569.a.a #32	ENSGT00390000001799 #33	ENSGT00940000156300.d #35	ENSGT00390000006634 #36
Sooty mangabey	MODERN SPECIES	187	ENSCATG00000021769	SLCO4A1 (ENSCATG00000031528) #9	ENSCATG00000036195	GATA5 (ENSCATG00000036346) #10	RBBP8NL (ENSCATG00000011302) #11	CABLES2 (ENSCATG00000008047) #12	RPS21 (ENSCATG00000031953) #13	LAMA5 (ENSCATG00000014362) #14	ADRM1 (ENSCATG00000042561) #15	OSBPL2 (ENSCATG00000012207) #16	HRH3 (ENSCATG00000028495) #17	MTG2 (ENSCATG00000032978) #18	SS18L1 (ENSCATG00000038095) #19	PSMA7 (ENSCATG00000012259) #20	LSM14B (ENSCATG00000036006) #21	TAF4 (ENSCATG00000002458) #22	CDH4 (ENSCATG00000042334) #23
Drill	MODERN SPECIES	1087	ENSMLEG00000031976	SLCO4A1 (ENSMLEG00000026008) #9	GATA5 (ENSMLEG00000032309) #10	RBBP8NL (ENSMLEG00000031990) #11	CABLES2 (ENSMLEG00000042843) #12	ENSMLEG00000036605 #13	LAMA5 (ENSMLEG00000036374) #14	ADRM1 (ENSMLEG00000041503) #15	ENSMLEG00000042538	OSBPL2 (ENSMLEG00000043090) #16	HRH3 (ENSMLEG00000027666) #17	MTG2 (ENSMLEG00000040729) #18	SS18L1 (ENSMLEG00000037833) #19	PSMA7 (ENSMLEG00000033853) #20	LSM14B (ENSMLEG00000040895) #21	TAF4 (ENSMLEG00000041573) #22	CDH4 (ENSMLEG00000040626) #23	CDH26 (ENSMLEG00000033250) #24	FAM217B (ENSMLEG00000009217)	PPP1R3D (ENSMLEG00000027435)	SYCP2 (ENSMLEG00000030694) #25	PHACTR3 (ENSMLEG00000032882) #26	EDN3 (ENSMLEG00000031308) #27	ZNF831 (ENSMLEG00000030734) #28	ENSMLEG00000030481 #29	ATP5F1E (ENSMLEG00000032031) #30	TUBB1 (ENSMLEG00000037666) #31	CTSZ (ENSMLEG00000038716) #32	NELFCD (ENSMLEG00000012484) #33	ENSMLEG00000031316	ENSMLEG00000018242 #35
Macaca	ANCESTRAL SPECIES	16	ENSGT01100000263518.A.a.a.a #8	ENSGT00390000014718	ENSGT01080000257410.C #9	ENSGT00940000160139 #10	ENSGT00530000063835.a #11	ENSGT00400000022086.b.b #12	ENSGT00390000017515.o.b #13	ENSGT00940000156537 #14	ENSGT00390000013839 #15	ENSGT00940000158762 #16	ENSGT00940000161502 #17	ENSGT00940000157379 #18	ENSGT00940000159853 #19	ENSGT00940000159695 #20	ENSGT00940000156010 #21	ENSGT00390000011620.a.a.b #22	ENSGT00940000158073 #23	ENSGT00910000147450	ENSGT00940000161589 #24	ENSGT00940000154543.a	ENSGT00940000161921	ENSGT00530000063859.b #25	ENSGT00940000157562 #26	ENSGT00950000183053.C #27	ENSGT00940000161664 #28	ENSGT00950000182810.A.a.a.lb.c #29	ENSGT00390000015470 #30	ENSGT00940000159809 #31	ENSGT00940000155569.a.a #32	ENSGT00390000001799 #33	ENSGT00940000156300.d #35
Macaca_a	ANCESTRAL SPECIES	18	ENSGT01100000263518.A.a.a.a #8	ENSGT00390000014718	ENSGT01080000257410.C #9	ENSGT00940000160139 #10	ENSGT00530000063835.a #11	ENSGT00400000022086.b.b #12	ENSGT00390000017515.o.b #13	ENSGT00390000017515.p ##13	ENSGT00390000013839 #15	ENSGT00940000158762 #16	ENSGT00940000161502 #17	ENSGT00940000157379 #18	ENSGT00940000159853 #19	ENSGT00940000159695 #20	ENSGT00940000156010 #21	ENSGT00390000011620.a.a.b #22	ENSGT00940000158073 #23	ENSGT00940000161589 #24	ENSGT00940000154543.a	ENSGT00940000161921	ENSGT00530000063859.b #25	ENSGT00940000157562 #26	ENSGT00950000183053.C #27	ENSGT00940000161664 #28	ENSGT00950000182810.A.a.a.lb.c #29	ENSGT00390000015470 #30	ENSGT00940000159809 #31	ENSGT00940000155569.a.a #32	ENSGT00390000001799 #33	ENSGT00940000156300.d #35	ENSGT00960000189526
Rhesus	MODERN SPECIES	1	OGFR (ENSMMUG00000016856)	MRGBP (ENSMMUG00000046848) #7	NTSR1 (ENSMMUG00000016854) #8	ENSMMUG00000016851	SLCO4A1 (ENSMMUG00000016848) #9	GATA5 (ENSMMUG00000017584) #10	RBBP8NL (ENSMMUG00000020933) #11	CABLES2 (ENSMMUG00000005011) #12	RPS21 (ENSMMUG00000005006) #13	OSBPL2 (ENSMMUG00000012623) #16	HRH3 (ENSMMUG00000050324) #17	MTG2 (ENSMMUG00000012607) #18	SS18L1 (ENSMMUG00000012606) #19	PSMA7 (ENSMMUG00000018354) #20	LSM14B (ENSMMUG00000014084) #21	TAF4 (ENSMMUG00000008696) #22	CDH4 (ENSMMUG00000012314) #23	ENSMMUG00000052443	CDH26 (ENSMMUG00000008123) #24	PPP1R3D (ENSMMUG00000019469)	FAM217B (ENSMMUG00000057303)	SYCP2 (ENSMMUG00000016294) #25	PHACTR3 (ENSMMUG00000016292) #26	EDN3 (ENSMMUG00000016131) #27	ZNF831 (ENSMMUG00000020745) #28	PRELID3B (ENSMMUG00000007560) #29	ATP5F1E (ENSMMUG00000053623) #30	TUBB1 (ENSMMUG00000012164) #31	CTSZ (ENSMMUG00000015391) #32	NELFCD (ENSMMUG00000015390) #33	GNAS (ENSMMUG00000010266) #35
Crab-eating macaque	MODERN SPECIES	1	MRGBP (ENSMFAG00000058768) #7	ENSMFAG00000030438 #8	ENSMFAG00000001871	SLCO4A1 (ENSMFAG00000041624) #9	GATA5 (ENSMFAG00000041967) #10	RBBP8NL (ENSMFAG00000037646) #11	CABLES2 (ENSMFAG00000016607) #12	RPS21 (ENSMFAG00000002515) ##13	OSBPL2 (ENSMFAG00000030160) #16	HRH3 (ENSMFAG00000040768) #17	MTG2 (ENSMFAG00000045680) #18	ADRM1 (ENSMFAG00000042099) #15	SS18L1 (ENSMFAG00000038339) #19	PSMA7 (ENSMFAG00000000723) #20	LSM14B (ENSMFAG00000041479) #21	TAF4 (ENSMFAG00000002330) #22	CDH4 (ENSMFAG00000042158) #23	ENSMFAG00000063149	CDH26 (ENSMFAG00000034675) #24	FAM217B (ENSMFAG00000030015)	SYCP2 (ENSMFAG00000000376) #25	PHACTR3 (ENSMFAG00000034633) #26	EDN3 (ENSMFAG00000039249) #27	ZNF831 (ENSMFAG00000040583) #28	PRELID3B (ENSMFAG00000039743) #29	ATP5F1E (ENSMFAG00000049506) #30	TUBB1 (ENSMFAG00000038605) #31	CTSZ (ENSMFAG00000001397) #32	NELFCD (ENSMFAG00000002141) #33	GNAS (ENSMFAG00000056056) #35	ENSMFAG00000043651
Pig-tailed macaque	MODERN SPECIES	462	SLCO4A1 (ENSMNEG00000031292) #9	ENSMNEG00000037283	GATA5 (ENSMNEG00000041625) #10	RBBP8NL (ENSMNEG00000034032) #11	CABLES2 (ENSMNEG00000032286) #12	ENSMNEG00000045270 #13	LAMA5 (ENSMNEG00000040397) #14	ADRM1 (ENSMNEG00000025734) #15	OSBPL2 (ENSMNEG00000032024) #16	ENSMNEG00000034576	HRH3 (ENSMNEG00000044771) #17	MTG2 (ENSMNEG00000035874) #18	SS18L1 (ENSMNEG00000039319) #19	PSMA7 (ENSMNEG00000027997) #20	LSM14B (ENSMNEG00000045573) #21	TAF4 (ENSMNEG00000035762) #22	CDH4 (ENSMNEG00000020065) #23	ENSMNEG00000036031	CDH26 (ENSMNEG00000045267) #24	FAM217B (ENSMNEG00000011065)	PPP1R3D (ENSMNEG00000005403)	SYCP2 (ENSMNEG00000034411) #25	PHACTR3 (ENSMNEG00000033528) #26	EDN3 (ENSMNEG00000039101) #27	ZNF831 (ENSMNEG00000038486) #28	ENSMNEG00000035689 #29	ATP5F1E (ENSMNEG00000030079) #30	ENSMNEG00000043401	TUBB1 (ENSMNEG00000030119) #31	CTSZ (ENSMNEG00000036117) #32	NELFCD (ENSMNEG00000032684) #33
Rhinopithecus	ANCESTRAL SPECIES	13	ENSGT00390000014718	ENSGT01080000257410.C #9	ENSGT00940000160139 #10	ENSGT00530000063835.a #11	ENSGT00400000022086.b.b #12	ENSGT00390000017515.o.b #13	ENSGT00940000156537 #14	ENSGT00390000013839 #15	ENSGT00910000148025	ENSGT00940000158762 #16	ENSGT00940000161502 #17	ENSGT00940000157379 #18	ENSGT00940000159853 #19	ENSGT00940000159695 #20	ENSGT00940000156010 #21	ENSGT00390000011620.a.a.b #22	ENSGT00940000158073 #23	ENSGT00940000168632	ENSGT00940000161921	ENSGT00530000063859.b #25	ENSGT00940000157562 #26	ENSGT00950000183053.C #27	ENSGT00940000161664 #28	ENSGT00950000182810.A.a.a.lb #29	ENSGT00390000015470 #30	ENSGT00940000159809 #31	ENSGT00940000155569.a.a #32	ENSGT00390000001799 #33	ENSGT00940000156300.d #35	ENSGT00390000006634 #36	ENSGT00530000063255.A
Black snub-nosed monkey	MODERN SPECIES	671	NTSR1 (ENSRBIG00000034200) #8	ENSRBIG00000033976	SLCO4A1 (ENSRBIG00000027762) #9	GATA5 (ENSRBIG00000043083) #10	RBBP8NL (ENSRBIG00000041927) #11	CABLES2 (ENSRBIG00000039825) #12	RPS21 (ENSRBIG00000023738) #13	LAMA5 (ENSRBIG00000020450) #14	ADRM1 (ENSRBIG00000032506) #15	OSBPL2 (ENSRBIG00000008547) #16	HRH3 (ENSRBIG00000036605) #17	MTG2 (ENSRBIG00000039343) #18	SS18L1 (ENSRBIG00000043216) #19	PSMA7 (ENSRBIG00000030294) #20	LSM14B (ENSRBIG00000033461) #21	TAF4 (ENSRBIG00000039196) #22
Golden snub-nosed monkey	MODERN SPECIES	1209	ENSRROG00000043466	SLCO4A1 (ENSRROG00000036205) #9	GATA5 (ENSRROG00000031877) #10	RBBP8NL (ENSRROG00000040315) #11	CABLES2 (ENSRROG00000043457) #12	RPS21 (ENSRROG00000038602) #13	LAMA5 (ENSRROG00000035759) #14	ADRM1 (ENSRROG00000019480) #15	ENSRROG00000038495	OSBPL2 (ENSRROG00000029664) #16	HRH3 (ENSRROG00000042867) #17	MTG2 (ENSRROG00000030772) #18	SS18L1 (ENSRROG00000040133) #19	PSMA7 (ENSRROG00000043126) #20	LSM14B (ENSRROG00000042949) #21	TAF4 (ENSRROG00000043238) #22	CDH4 (ENSRROG00000029814) #23	ENSRROG00000044130	PPP1R3D (ENSRROG00000041886)	SYCP2 (ENSRROG00000036065) #25	PHACTR3 (ENSRROG00000014403) #26	EDN3 (ENSRROG00000041099) #27	ZNF831 (ENSRROG00000033836) #28	PRELID3B (ENSRROG00000044337) #29	ATP5F1E (ENSRROG00000014776) #30	TUBB1 (ENSRROG00000029741) #31	CTSZ (ENSRROG00000039294) #32	NELFCD (ENSRROG00000032620) #33	ENSRROG00000042757 #35	ENSRROG00000042384 #36	NPEPL1 (ENSRROG00000038029)
Tarsier	MODERN SPECIES	1324																TAF4 (ENSTSYG00000036619) #22	CDH4 (ENSTSYG00000010646) #23
Strepsirrhini	ANCESTRAL SPECIES	12	ENSGT01100000263518.A.a.a.a #8	ENSGT00390000014718	ENSGT01080000257410.C #9	ENSGT00940000160139 #10	ENSGT00530000063835.a #11	ENSGT00400000022086.b.b #12	ENSGT00390000017515.o.b #13	ENSGT00940000156537 #14	ENSGT00390000013839 #15	ENSGT00940000158762 #16	ENSGT00940000161502 #17	ENSGT00940000157379 #18	ENSGT00940000159853 #19	ENSGT00940000159695 #20	ENSGT00940000156010 #21	ENSGT00390000011620.a.a.b #22	ENSGT00940000158073 #23	ENSGT00940000161589 #24	ENSGT00940000154543.a	ENSGT00940000161921	ENSGT00530000063859.b #25	ENSGT00940000157562 #26	ENSGT00950000183053.C #27	ENSGT00940000161664 #28	ENSGT00950000182810.A.a.a #29	ENSGT00390000015470 #30	ENSGT00940000159809 #31	ENSGT00940000155569.a.a #32	ENSGT00390000001799 #33	ENSGT00940000156300.d #35	ENSGT01090000260114
Bushbaby	MODERN SPECIES	138	MRGBP (ENSOGAG00000011183) #7	NTSR1 (ENSOGAG00000027155) #8	SLCO4A1 (ENSOGAG00000005124) #9	GATA5 (ENSOGAG00000025085) #10	RBBP8NL (ENSOGAG00000000946) #11	CABLES2 (ENSOGAG00000000945) #12	RPS21 (ENSOGAG00000016673) #13	LAMA5 (ENSOGAG00000000942) #14	ADRM1 (ENSOGAG00000000941) #15	OSBPL2 (ENSOGAG00000000939) #16	HRH3 (ENSOGAG00000027837) #17	MTG2 (ENSOGAG00000000933) #18	SS18L1 (ENSOGAG00000034040) #19	ENSOGAG00000000931 #20	LSM14B (ENSOGAG00000003915) #21	TAF4 (ENSOGAG00000024820) #22	ENSOGAG00000028531	CDH4 (ENSOGAG00000007919) #23	ENSOGAG00000026737	CDH26 (ENSOGAG00000004717) #24	FAM217B (ENSOGAG00000004716)	PPP1R3D (ENSOGAG00000025179)	SYCP2 (ENSOGAG00000004710) #25	ENSOGAG00000027091	PHACTR3 (ENSOGAG00000004707) #26	EDN3 (ENSOGAG00000029876) #27	ZNF831 (ENSOGAG00000026401) #28	PRELID3B (ENSOGAG00000013382) #29	ATP5F1E (ENSOGAG00000029763) #30	TUBB1 (ENSOGAG00000013378) #31	CTSZ (ENSOGAG00000014271) #32
Lemuriformes	ANCESTRAL SPECIES	10	ENSGT01100000263518.A.a.a.a #8	ENSGT00390000014718	ENSGT01080000257410.C #9	ENSGT00940000160139 #10	ENSGT00530000063835.a #11	ENSGT00400000022086.b.b #12	ENSGT00390000017515.o.b #13	ENSGT00940000156537 #14	ENSGT00390000013839 #15	ENSGT00940000158762 #16	ENSGT00940000161502 #17	ENSGT00940000157379 #18	ENSGT00940000159853 #19	ENSGT00940000159695 #20	ENSGT00940000156010 #21	ENSGT00390000011620.a.a.b #22	ENSGT00940000158073 #23	ENSGT00940000161589 #24	ENSGT00940000154543.a	ENSGT00940000161921	ENSGT00530000063859.b #25	ENSGT00940000157562 #26	ENSGT00950000183053.C #27	ENSGT00940000161664 #28	ENSGT00950000182810.A.a.a #29	ENSGT00390000015470 #30	ENSGT00940000159809 #31	ENSGT00940000155569.a.a #32	ENSGT00390000001799 #33	ENSGT00940000156300.d #35	ENSGT01090000260114
Lemuriformes_a	ANCESTRAL SPECIES	139	ENSGT01100000263518.A.a.a.a #8	ENSGT00390000014718	ENSGT01080000257410.C #9	ENSGT00940000160139 #10	ENSGT00530000063835.a #11	ENSGT00400000022086.b.b #12	ENSGT00390000017515.o.b #13	ENSGT00940000156537 #14	ENSGT00390000013839 #15	ENSGT00940000158762 #16	ENSGT00940000161502 #17	ENSGT00940000157379 #18	ENSGT00940000159853 #19	ENSGT00940000159695 #20	ENSGT00940000156010 #21	ENSGT00390000011620.a.a.b #22	ENSGT00940000158073 #23
Coquerels sifaka	MODERN SPECIES	594	MRGBP (ENSPCOG00000023597) #7	NTSR1 (ENSPCOG00000015702) #8	SLCO4A1 (ENSPCOG00000021209) #9	GATA5 (ENSPCOG00000007837) #10	RBBP8NL (ENSPCOG00000028470) #11	CABLES2 (ENSPCOG00000025315) #12	RPS21 (ENSPCOG00000013052) #13	LAMA5 (ENSPCOG00000019475) #14	ADRM1 (ENSPCOG00000021357) #15	OSBPL2 (ENSPCOG00000016868) #16	HRH3 (ENSPCOG00000026734) #17	MTG2 (ENSPCOG00000022764) #18	SS18L1 (ENSPCOG00000013363) #19	PSMA7 (ENSPCOG00000012673) #20	LSM14B (ENSPCOG00000013625) #21	TAF4 (ENSPCOG00000028002) #22	CDH4 (ENSPCOG00000027008) #23
Greater bamboo lemur	MODERN SPECIES	1319								ENSPSMG00000004220 #14	ENSPSMG00000004265 #15	OSBPL2 (ENSPSMG00000004583) #16	HRH3 (ENSPSMG00000004735) #17	MTG2 (ENSPSMG00000004777) #18	SS18L1 (ENSPSMG00000004820) #19	PSMA7 (ENSPSMG00000004865) #20	LSM14B (ENSPSMG00000004907) #21	TAF4 (ENSPSMG00000004918) #22
Mouse lemur	MODERN SPECIES	9	MRGBP (ENSMICG00000048156) #7	NTSR1 (ENSMICG00000026504) #8	SLCO4A1 (ENSMICG00000001139) #9	GATA5 (ENSMICG00000037048) #10	RBBP8NL (ENSMICG00000031675) #11	ENSMICG00000006412 #12	RPS21 (ENSMICG00000046562) #13	LAMA5 (ENSMICG00000013411) #14	ADRM1 (ENSMICG00000013395) #15	OSBPL2 (ENSMICG00000013373) #16	HRH3 (ENSMICG00000003541) #17	MTG2 (ENSMICG00000035055) #18	SS18L1 (ENSMICG00000032545) #19	PSMA7 (ENSMICG00000014687) #20	LSM14B (ENSMICG00000014675) #21	TAF4 (ENSMICG00000004029) #22	CDH4 (ENSMICG00000004615) #23	CDH26 (ENSMICG00000002587) #24	FAM217B (ENSMICG00000002583)	SYCP2 (ENSMICG00000002560) #25	PHACTR3 (ENSMICG00000006160) #26	EDN3 (ENSMICG00000042154) #27	ZNF831 (ENSMICG00000028622) #28	ENSMICG00000014902 #29	ATP5F1E (ENSMICG00000014899) #30	TUBB1 (ENSMICG00000037644) #31	CTSZ (ENSMICG00000014882) #32	NELFCD (ENSMICG00000014872) #33	ENSMICG00000029253	GNAS (ENSMICG00000008427) #35	ENSMICG00000046510
Euarchontoglires_A	ANCESTRAL SPECIES	16	ENSGT00390000014718	ENSGT01080000257410.C #9	ENSGT00960000192285	ENSGT00940000160139 #10	ENSGT00530000063835.a #11	ENSGT00400000022086.b.b #12	ENSGT00390000017515.o.b #13	ENSGT00940000156537 #14	ENSGT00390000013839 #15	ENSGT00940000158762 #16	ENSGT00940000161502 #17	ENSGT00940000157379 #18	ENSGT00940000159853 #19	ENSGT00940000159695 #20	ENSGT00940000156010 #21	ENSGT00390000011620.a.a.b #22	ENSGT00940000158073 #23	ENSGT00940000161589 #24	ENSGT00940000154543.a	ENSGT00940000161921	ENSGT00530000063859.b #25	ENSGT00940000157562 #26	ENSGT00950000183053.C #27	ENSGT00940000161664 #28	ENSGT00950000182810.A.a.a #29	ENSGT00390000015470 #30	ENSGT00940000159809 #31	ENSGT00940000155569.a.a #32	ENSGT00390000001799 #33	ENSGT01090000260114	ENSGT00940000156300.d #35
Tree shrew	MODERN SPECIES	1336																ENSTBEG00000007812 #22
Glires	ANCESTRAL SPECIES	17	ENSGT00390000014718	ENSGT01080000257410.C #9	ENSGT00960000192285	ENSGT00940000160139 #10	ENSGT00530000063835.a #11	ENSGT00400000022086.b.b #12	ENSGT00390000017515.o.b #13	ENSGT00940000156537 #14	ENSGT00390000013839 #15	ENSGT00940000158762 #16	ENSGT00940000161502 #17	ENSGT00940000157379 #18	ENSGT00940000159853 #19	ENSGT00940000159695 #20	ENSGT00940000156010 #21	ENSGT00390000011620.a.a.b #22	ENSGT00940000158073 #23	ENSGT00940000161589 #24	ENSGT00940000154543.a	ENSGT00940000161921	ENSGT00530000063859.b #25	ENSGT00940000157562 #26	ENSGT00950000183053.C #27	ENSGT00940000161664 #28	ENSGT00950000182810.A.a.a #29	ENSGT00390000015470 #30	ENSGT00940000159809 #31	ENSGT00940000155569.a.a #32	ENSGT00390000001799 #33	ENSGT01090000260114	ENSGT00940000156300.d #35
Rodentia	ANCESTRAL SPECIES	18	ENSGT00390000014718	ENSGT01080000257410.C #9	ENSGT00960000192285	ENSGT00940000160139 #10	ENSGT00530000063835.a #11	ENSGT00400000022086.b.b #12	ENSGT00390000017515.o.b #13	ENSGT00940000156537 #14	ENSGT00390000013839 #15	ENSGT00940000158762 #16	ENSGT00940000161502 #17	ENSGT00940000157379 #18	ENSGT00940000159853 #19	ENSGT00940000159695 #20	ENSGT00940000156010 #21	ENSGT00390000011620.a.a.b #22	ENSGT00940000158073 #23	ENSGT00940000161589 #24	ENSGT00940000154543.a	ENSGT00940000161921	ENSGT00530000063859.b #25	ENSGT00940000157562 #26	ENSGT00950000183053.C #27	ENSGT00940000161664 #28	ENSGT00950000182810.A.a.a #29	ENSGT00390000015470 #30	ENSGT00940000159809 #31	ENSGT00940000155569.a.a #32	ENSGT00390000001799 #33	ENSGT00940000155271	ENSGT01090000260114
Rodentia_A	ANCESTRAL SPECIES	17	ENSGT01100000263518.A.a.a.a #8	ENSGT01080000257410.C #9	ENSGT00940000160139 #10	ENSGT00530000063835.a #11	ENSGT00400000022086.b.b #12	ENSGT00390000017515.o.b.i.b #13	ENSGT00390000017515.o.b.j #13	ENSGT00940000156537 #14	ENSGT00390000013839 #15	ENSGT00940000158762 #16	ENSGT00940000161502 #17	ENSGT00940000157379 #18	ENSGT00940000159853 #19	ENSGT00940000159695 #20	ENSGT00940000156010 #21	ENSGT00390000011620.a.a.b #22	ENSGT00940000158073 #23	ENSGT00940000154543.a	ENSGT00940000161921	ENSGT00530000063859.b #25	ENSGT00940000157562 #26	ENSGT00950000183053.C #27	ENSGT00940000161664 #28	ENSGT00950000182810.A.a.a #29	ENSGT00390000015470 #30	ENSGT00940000159809 #31	ENSGT00940000155569.a.a #32	ENSGT00390000001799 #33	ENSGT00940000156300.d #35	ENSGT01090000260114	ENSGT00940000165887
Hystricomorpha	ANCESTRAL SPECIES	10	ENSGT01080000257410.C #9	ENSGT00940000160139 #10	ENSGT00530000063835.a #11	ENSGT00400000022086.b.b.i #12	ENSGT00390000017515.o.b.i.b #13	ENSGT00400000022086.b.b.j #12	ENSGT00390000017515.o.b.j #13	ENSGT00940000156537 #14	ENSGT00390000013839 #15	ENSGT00940000158762 #16	ENSGT00940000161502 #17	ENSGT00940000157379 #18	ENSGT00940000159853 #19	ENSGT00940000159695 #20	ENSGT00940000156010 #21	ENSGT00390000011620.a.a.b #22	ENSGT00940000158073 #23	ENSGT00940000154543.a	ENSGT00940000161921	ENSGT00530000063859.b #25	ENSGT00940000157562 #26	ENSGT00950000183053.C #27	ENSGT00940000161664 #28	ENSGT00950000182810.A.a.a #29	ENSGT00390000015470.s #30	ENSGT00940000159809 #31	ENSGT00940000155569.a.a #32	ENSGT00390000001799 #33	ENSGT00940000155271	ENSGT01090000260114	ENSGT00940000156300.d #35
Hystricomorpha_a	ANCESTRAL SPECIES	66	ENSGT01100000263518.A.a.a.a #8	ENSGT01080000257410.C #9	ENSGT00940000160139 #10	ENSGT00530000063835.a #11	ENSGT00400000022086.b.b.i #12	ENSGT00390000017515.o.b.i.b #13	ENSGT00390000017515.o.b.j #13	ENSGT00940000156537 #14	ENSGT00390000013839 #15	ENSGT00940000158762 #16	ENSGT00940000161502 #17	ENSGT00940000157379 #18	ENSGT00940000159853 #19	ENSGT00940000159695 #20	ENSGT00940000156010 #21	ENSGT00390000011620.a.a.b #22	ENSGT00940000158073 #23	ENSGT00940000154543.a	ENSGT00940000161921	ENSGT00530000063859.b #25	ENSGT00940000157562 #26
Hystricomorpha_b	ANCESTRAL SPECIES	83	ENSGT01100000263518.A.a.a.a #8	ENSGT01080000257410.C #9	ENSGT00940000160139 #10	ENSGT00530000063835.a #11	ENSGT00400000022086.b.b.i #12	ENSGT00390000017515.o.b.i.b #13	ENSGT00390000017515.o.b.j #13	ENSGT00940000156537 #14	ENSGT00390000013839 #15	ENSGT00940000158762 #16	ENSGT00940000161502 #17	ENSGT00940000157379 #18	ENSGT00940000159853 #19	ENSGT00940000159695 #20	ENSGT00940000156010 #21	ENSGT00390000011620.a.a.b #22	ENSGT00940000158073 #23	ENSGT00940000154543.a	ENSGT00940000161921	ENSGT00530000063859.b #25	ENSGT00940000157562 #26
Long-tailed chinchilla	MODERN SPECIES	235	ENSCLAG00000002627 #7	NTSR1 (ENSCLAG00000002645) #8	SLCO4A1 (ENSCLAG00000007190) #9	CABLES2 (ENSCLAG00000007291) #12	GATA5 (ENSCLAG00000007559) #10	RBBP8NL (ENSCLAG00000006833) #11	RPS21 (ENSCLAG00000007566) #13	LAMA5 (ENSCLAG00000009241) #14	ADRM1 (ENSCLAG00000005222) #15	OSBPL2 (ENSCLAG00000005408) #16	HRH3 (ENSCLAG00000005909) #17	MTG2 (ENSCLAG00000002886) #18	SS18L1 (ENSCLAG00000003078) #19	PSMA7 (ENSCLAG00000003150) #20	LSM14B (ENSCLAG00000003186) #21	TAF4 (ENSCLAG00000003706) #22	CDH4 (ENSCLAG00000003861) #23	SYCP2 (ENSCLAG00000004302) #25	PHACTR3 (ENSCLAG00000002652) #26
Degu	MODERN SPECIES	235	MRGBP (ENSODEG00000004674) #7	NTSR1 (ENSODEG00000004689) #8	SLCO4A1 (ENSODEG00000004720) #9	GATA5 (ENSODEG00000003615) #10	RBBP8NL (ENSODEG00000003634) #11	CABLES2 (ENSODEG00000003674) #12	ENSODEG00000003715 #13	LAMA5 (ENSODEG00000003782) #14	ADRM1 (ENSODEG00000003910) #15	OSBPL2 (ENSODEG00000003927) #16	HRH3 (ENSODEG00000003961) #17	MTG2 (ENSODEG00000004006) #18	SS18L1 (ENSODEG00000004038) #19	PSMA7 (ENSODEG00000004073) #20	LSM14B (ENSODEG00000004099) #21	TAF4 (ENSODEG00000004136) #22	CDH4 (ENSODEG00000004169) #23	FAM217B (ENSODEG00000004205)	PPP1R3D (ENSODEG00000004216)	ENSODEG00000004232 #25	PHACTR3 (ENSODEG00000004273) #26
Guinea pig	MODERN SPECIES	119	MRGBP (ENSCPOG00000020272) #7	NTSR1 (ENSCPOG00000033878) #8	SLCO4A1 (ENSCPOG00000015749) #9	GATA5 (ENSCPOG00000030979) #10	RBBP8NL (ENSCPOG00000030864) #11	CABLES2 (ENSCPOG00000001967) #12	RPS21 (ENSCPOG00000001965) #13	LAMA5 (ENSCPOG00000009593) #14	ADRM1 (ENSCPOG00000009588) #15	OSBPL2 (ENSCPOG00000006907) #16	HRH3 (ENSCPOG00000007127) #17	MTG2 (ENSCPOG00000023202) #18	SS18L1 (ENSCPOG00000002513) #19	PSMA7 (ENSCPOG00000014168) #20	LSM14B (ENSCPOG00000038080) #21	TAF4 (ENSCPOG00000030707) #22	CDH4 (ENSCPOG00000005520) #23	FAM217B (ENSCPOG00000032600)	ENSCPOG00000009549 #25	PHACTR3 (ENSCPOG00000004795) #26
Sciuridae	ANCESTRAL SPECIES	13	ENSGT00390000007823 #7	ENSGT01100000263518.A.a.a.a #8	ENSGT01080000257410.C #9	ENSGT00940000160139 #10	ENSGT00530000063835.a #11	ENSGT00400000022086.b.b #12	ENSGT00390000017515.p ##13	ENSGT00940000156537 #14	ENSGT00390000013839 #15	ENSGT00940000158762 #16	ENSGT00940000161502 #17	ENSGT00940000157379 #18	ENSGT00940000159853 #19	ENSGT00940000159695 #20	ENSGT00940000156010 #21	ENSGT00390000011620.a.a.b #22	ENSGT00940000158073 #23	ENSGT00940000154543.a	ENSGT00940000161921	ENSGT00530000063859.b #25	ENSGT00940000157562 #26	ENSGT00950000183053.C #27	ENSGT00940000161664 #28	ENSGT00950000182810.A.a.a #29	ENSGT00390000015470 #30	ENSGT00940000159809 #31	ENSGT00940000155569.a.a #32	ENSGT00390000001799 #33	ENSGT01090000260114	ENSGT00940000156300.d #35	ENSGT00940000165887
Marmotini	ANCESTRAL SPECIES	5	ENSGT00390000007823 #7	ENSGT01100000263518.A.a.a.a #8	ENSGT01080000257410.C #9	ENSGT00940000160139 #10	ENSGT00530000063835.a #11	ENSGT00400000022086.b.b #12	ENSGT00390000017515.p ##13	ENSGT00940000156537 #14	ENSGT00390000013839 #15	ENSGT00940000158762 #16	ENSGT00940000161502 #17	ENSGT00940000157379.a #18	ENSGT00940000159853 #19	ENSGT00940000159695 #20	ENSGT00940000156010 #21	ENSGT00390000011620.a.a.b #22	ENSGT00940000158073 #23	ENSGT00940000154543.a	ENSGT00940000161921	ENSGT00530000063859.b #25	ENSGT00940000157562 #26	ENSGT00940000160207	ENSGT00940000160902	ENSGT00940000158934	ENSGT01090000260040.b.a.b	ENSGT00940000157106	ENSGT00940000161058.a.a	ENSGT00940000159787	ENSGT00940000160096	ENSGT00730000111369	ENSGT00390000002529
Marmotini_b	ANCESTRAL SPECIES	25	ENSGT00390000007823 #7	ENSGT01100000263518.A.a.a.a #8	ENSGT01080000257410.C #9	ENSGT00940000160139 #10	ENSGT00530000063835.a #11	ENSGT00400000022086.b.b #12	ENSGT00390000017515.p ##13	ENSGT00940000156537 #14	ENSGT00390000013839 #15	ENSGT00940000158762 #16	ENSGT00940000161502 #17	ENSGT00940000157379.a #18	ENSGT00940000159853 #19	ENSGT00940000159695 #20	ENSGT00940000156010 #21	ENSGT00390000011620.a.a.b #22	ENSGT00940000158073 #23	ENSGT00940000154543.a	ENSGT00940000161921	ENSGT00530000063859.b #25	ENSGT00940000157562 #26	ENSGT00940000160207	ENSGT00940000160902	ENSGT00940000158934	ENSGT01090000260040.b.a.b	ENSGT00940000157106	ENSGT00940000161058.a.a	ENSGT00940000161058.b	ENSGT00940000159787	ENSGT00940000160096	ENSGT00730000111369
Squirrel	MODERN SPECIES	114	MRGBP (ENSSTOG00000012953) #7	NTSR1 (ENSSTOG00000026120) #8	SLCO4A1 (ENSSTOG00000019826) #9	GATA5 (ENSSTOG00000010454) #10	RBBP8NL (ENSSTOG00000024557) #11	CABLES2 (ENSSTOG00000001031) #12	RPS21 (ENSSTOG00000001029) ##13	LAMA5 (ENSSTOG00000026668) #14	ADRM1 (ENSSTOG00000002691) #15	OSBPL2 (ENSSTOG00000011355) #16	HRH3 (ENSSTOG00000021350) #17	MTG2 (ENSSTOG00000024521) #18	SS18L1 (ENSSTOG00000022485) #19	PSMA7 (ENSSTOG00000012489) #20	LSM14B (ENSSTOG00000020482) #21	TAF4 (ENSSTOG00000014768) #22	CDH4 (ENSSTOG00000024476) #23	FAM217B (ENSSTOG00000028925)	PPP1R3D (ENSSTOG00000027059)	ENSSTOG00000032010 #25	PHACTR3 (ENSSTOG00000000260) #26	CCN5 (ENSSTOG00000025361)	KCNK15 (ENSSTOG00000030351)	RIMS4 (ENSSTOG00000022472)	YWHAB (ENSSTOG00000003733)	PABPC1L (ENSSTOG00000003739)	TOMM34 (ENSSTOG00000019477)	ENSSTOG00000031644	STK4 (ENSSTOG00000009251)	KCNS1 (ENSSTOG00000009257)	WFDC5 (ENSSTOG00000030004)
Arctic ground squirrel	MODERN SPECIES	372	OGFR (ENSUPAG00010009496)	MRGBP (ENSUPAG00010009485) #7	NTSR1 (ENSUPAG00010009468) #8	SLCO4A1 (ENSUPAG00010009439) #9	GATA5 (ENSUPAG00010009409) #10	RBBP8NL (ENSUPAG00010009390) #11	CABLES2 (ENSUPAG00010009371) #12	ENSUPAG00010009364 ##13	ADRM1 (ENSUPAG00010008614) #15	OSBPL2 (ENSUPAG00010008572) #16	HRH3 (ENSUPAG00010008523) #17	MTG2 (ENSUPAG00010008487) #18	SS18L1 (ENSUPAG00010008474) #19	PSMA7 (ENSUPAG00010008463) #20	LSM14B (ENSUPAG00010008440) #21	TAF4 (ENSUPAG00010008419) #22	CDH4 (ENSUPAG00010008395) #23
Alpin marmot	MODERN SPECIES		OGFR (ENSMMMG00000003753)	MRGBP (ENSMMMG00000003862) #7	NTSR1 (ENSMMMG00000003907) #8	SLCO4A1 (ENSMMMG00000003911) #9	GATA5 (ENSMMMG00000003966) #10	RBBP8NL (ENSMMMG00000004035) #11	CABLES2 (ENSMMMG00000004085) #12	RPS21 (ENSMMMG00000004100) ##13	ADRM1 (ENSMMMG00000004549) #15	OSBPL2 (ENSMMMG00000004561) #16	HRH3 (ENSMMMG00000004618) #17	ENSMMMG00000004646 #18	SS18L1 (ENSMMMG00000004657) #19	ENSMMMG00000004668 #20	LSM14B (ENSMMMG00000004672) #21	ENSMMMG00000004719 #22	CDH4 (ENSMMMG00000004760) #23	FAM217B (ENSMMMG00000004800)	PPP1R3D (ENSMMMG00000004802)	ENSMMMG00000004806 #25	PHACTR3 (ENSMMMG00000004853) #26	CCN5 (ENSMMMG00000004881)	KCNK15 (ENSMMMG00000004903)	RIMS4 (ENSMMMG00000004946)	YWHAB (ENSMMMG00000004966)	PABPC1L (ENSMMMG00000004982)	ENSMMMG00000005008	STK4 (ENSMMMG00000005028)	WFDC5 (ENSMMMG00000005050)	ENSMMMG00000005063	SLPI (ENSMMMG00000005081)
Eurasian red squirrel	MODERN SPECIES	11	ENSSVLG00005003605	MRGBP (ENSSVLG00005003577) #7	NTSR1 (ENSSVLG00005003558) #8	SLCO4A1 (ENSSVLG00005003525) #9	GATA5 (ENSSVLG00005003441) #10	RBBP8NL (ENSSVLG00005003383) #11	CABLES2 (ENSSVLG00005003344) #12	ENSSVLG00005003318 #13	ENSSVLG00005003084 #15	OSBPL2 (ENSSVLG00005003034) #16	HRH3 (ENSSVLG00005003009) #17	ENSSVLG00005002984 #18	SS18L1 (ENSSVLG00005002951) #19	ENSSVLG00005002918 #20	LSM14B (ENSSVLG00005002868) #21	TAF4 (ENSSVLG00005002767) #22	CDH4 (ENSSVLG00005002684) #23	ENSSVLG00005002662	PPP1R3D (ENSSVLG00005002650)	ENSSVLG00005002613 #25	PHACTR3 (ENSSVLG00005002529) #26	EDN3 (ENSSVLG00005002438) #27	ZNF831 (ENSSVLG00005002392) #28	ENSSVLG00005002362 #29	ENSSVLG00005002334 #30	TUBB1 (ENSSVLG00005002321) #31	CTSZ (ENSSVLG00005002304) #32	NELFCD (ENSSVLG00005002237) #33	ENSSVLG00005002195	ENSSVLG00005002163	GNAS (ENSSVLG00005002064) #35
Rodentia_B	ANCESTRAL SPECIES	13	ENSGT00390000014718	ENSGT01080000257410.C #9	ENSGT00960000192285	ENSGT00940000160139 #10	ENSGT00530000063835.a #11	ENSGT00400000022086.b.b #12	ENSGT00390000017515.o.b #13	ENSGT00940000156537 #14	ENSGT00390000013839 #15	ENSGT00940000158762 #16	ENSGT00940000161502 #17	ENSGT00940000157379 #18	ENSGT00940000159853 #19	ENSGT00940000159695 #20	ENSGT00940000156010 #21	ENSGT00390000011620.a.a.b #22	ENSGT00940000158073 #23	ENSGT00940000161589 #24	ENSGT00940000154543.a	ENSGT00940000161921	ENSGT00530000063859.b #25	ENSGT00940000157562 #26	ENSGT00950000183053.C #27	ENSGT00940000161664 #28	ENSGT00950000182810.A.a.a #29	ENSGT00390000015470 #30	ENSGT00940000159809 #31	ENSGT00940000155569.a.a #32	ENSGT00390000001799 #33	ENSGT00940000155271	ENSGT00950000182832.D.b
Myomorpha	ANCESTRAL SPECIES	9	ENSGT00390000014718	ENSGT01080000257410.C #9	ENSGT00960000192285	ENSGT00940000160139 #10	ENSGT00530000063835.a #11	ENSGT00400000022086.b.b #12	ENSGT00390000017515.o.b #13	ENSGT00940000156537 #14	ENSGT00390000013839 #15	ENSGT00940000158762 #16	ENSGT00940000161502 #17	ENSGT00940000157379 #18	ENSGT00940000159853 #19	ENSGT00940000159695 #20	ENSGT00940000156010 #21	ENSGT00390000011620.a.a.b #22	ENSGT00940000158073 #23	ENSGT00940000161589 #24	ENSGT00940000154543.a	ENSGT00940000161921	ENSGT00530000063859.b #25	ENSGT00940000157562 #26	ENSGT00950000183053.C #27	ENSGT00940000161664 #28	ENSGT00950000182810.A.a.a #29	ENSGT00390000015470 #30	ENSGT00940000159809 #31	ENSGT00940000155569.a.a #32	ENSGT00390000001799 #33	ENSGT00940000155271	ENSGT00950000182832.D.b
Muroidea	ANCESTRAL SPECIES	7	ENSGT00390000014718	ENSGT01080000257410.C #9	ENSGT00960000192285	ENSGT00940000160139 #10	ENSGT00530000063835.a #11	ENSGT00400000022086.b.b #12	ENSGT00390000017515.o.b #13	ENSGT00940000156537 #14	ENSGT00390000013839 #15	ENSGT00940000158762 #16	ENSGT00940000161502 #17	ENSGT00940000157379 #18	ENSGT00940000159853 #19	ENSGT00940000159695 #20	ENSGT00940000156010 #21	ENSGT00390000011620.a.a.b #22	ENSGT00940000158073 #23	ENSGT00940000161589 #24	ENSGT00940000154543.a	ENSGT00940000161921	ENSGT00530000063859.b #25	ENSGT00940000157562 #26	ENSGT00950000183053.C #27	ENSGT00940000161664 #28	ENSGT00950000182810.A.a.a #29	ENSGT00390000015470 #30	ENSGT00940000159809 #31	ENSGT00940000155569.a.a #32	ENSGT00390000001799 #33	ENSGT01090000260114	ENSGT00940000156300.d #35
Muroidea_A	ANCESTRAL SPECIES	2	ENSGT00390000014718	ENSGT01080000257410.C #9	ENSGT00960000192285	ENSGT00940000160139 #10	ENSGT00530000063835.a #11	ENSGT00400000022086.b.b #12	ENSGT00390000017515.o.b #13	ENSGT00940000156537 #14	ENSGT00390000013839 #15	ENSGT00940000158762 #16	ENSGT00940000161502 #17	ENSGT00940000157379 #18	ENSGT00940000159853 #19	ENSGT00940000159695 #20	ENSGT00940000156010 #21	ENSGT00390000011620.a.a.b #22	ENSGT00940000158073 #23	ENSGT00940000161589 #24	ENSGT00940000154543.a	ENSGT00940000161921	ENSGT00530000063859.b #25	ENSGT00940000157562 #26	ENSGT00950000183053.C #27	ENSGT00940000161664 #28	ENSGT00950000182810.A.a.a #29	ENSGT00390000015470 #30	ENSGT00940000159809 #31	ENSGT00940000155569.a.a #32	ENSGT00390000001799 #33	ENSGT01090000260114	ENSGT00940000156300.d #35
Cricetidae	ANCESTRAL SPECIES	5	ENSGT00390000014718	ENSGT01080000257410.C #9	ENSGT00940000160139 #10	ENSGT00530000063835.a #11	ENSGT00400000022086.b.b #12	ENSGT00390000017515.o.b.e.a.b #13	ENSGT00390000017515.o.b.f #13	ENSGT00940000156537 #14	ENSGT00390000013839 #15	ENSGT00940000158762 #16	ENSGT00940000161502 #17	ENSGT00940000157379 #18	ENSGT00940000159853 #19	ENSGT00940000159695 #20	ENSGT00940000156010 #21	ENSGT00390000011620.a.a.b #22	ENSGT00940000158073 #23	ENSGT00940000161589 #24	ENSGT00940000154543.a	ENSGT00940000161921	ENSGT00530000063859.b #25	ENSGT00940000157562 #26	ENSGT00950000183053.C #27	ENSGT00940000161664 #28	ENSGT00950000182810.A.a.a #29	ENSGT00390000015470 #30	ENSGT00940000159809 #31	ENSGT00940000155569.a.a #32	ENSGT00390000001799 #33	ENSGT01090000260114	ENSGT00940000156300.d #35
Cricetinae	ANCESTRAL SPECIES	1	ENSGT00940000161930	ENSGT00390000018730.A	ENSGT00390000007823 #7	ENSGT01100000263518.A.a.a.a #8	ENSGT01080000257410.C #9	ENSGT00940000160139 #10	ENSGT00530000063835.a #11	ENSGT00940000156537 #14	ENSGT00390000013839 #15	ENSGT00940000158762 #16	ENSGT00940000161502 #17	ENSGT00940000157379 #18	ENSGT00940000159853 #19	ENSGT00940000159695 #20	ENSGT00940000156010 #21	ENSGT00390000011620.a.a.b #22	ENSGT00940000158073 #23	ENSGT00940000161589 #24	ENSGT00940000154543.a	ENSGT00940000161921	ENSGT00530000063859.b #25	ENSGT00940000157562 #26	ENSGT00950000183053.C #27	ENSGT00940000161664 #28	ENSGT00950000182810.A.a.a #29	ENSGT00390000015470 #30	ENSGT00940000159809 #31	ENSGT00940000155569.a.a #32	ENSGT00390000001799 #33	ENSGT01090000260114	ENSGT00940000156300.d #35
Golden Hamster	MODERN SPECIES	664	Col9a3 (ENSMAUG00000012721)	Ogfr (ENSMAUG00000018534)	Mrgbp (ENSMAUG00000017237) #7	Ntsr1 (ENSMAUG00000017871) #8	Slco4a1 (ENSMAUG00000009594) #9	Gata5 (ENSMAUG00000004902) #10	Rbbp8nl (ENSMAUG00000009217) #11	Lama5 (ENSMAUG00000015139) #14	ENSMAUG00000021991 #15	Osbpl2 (ENSMAUG00000014762) #16	Hrh3 (ENSMAUG00000012652) #17	Mtg2 (ENSMAUG00000018040) #18	Ss18l1 (ENSMAUG00000016777) #19	Psma7 (ENSMAUG00000011223) #20	Lsm14b (ENSMAUG00000020700) #21	Taf4 (ENSMAUG00000015258) #22	Cdh4 (ENSMAUG00000001328) #23	Cdh26 (ENSMAUG00000000843) #24	Fam217b (ENSMAUG00000018766)	Ppp1r3d (ENSMAUG00000008145)	ENSMAUG00000006215 #25	Phactr3 (ENSMAUG00000014908) #26	Edn3 (ENSMAUG00000017986) #27	Zfp831 (ENSMAUG00000020089) #28	Prelid3b (ENSMAUG00000012780) #29	Atp5e (ENSMAUG00000011798) #30	Tubb1 (ENSMAUG00000000615) #31	Ctsz (ENSMAUG00000000692) #32	Nelfcd (ENSMAUG00000000986) #33	ENSMAUG00000014610	Gnas (ENSMAUG00000018730) #35
Chinese hamster chok1gshd	MODERN SPECIES	195								Lama5 (ENSCGRG00001014677) #14	ENSCGRG00001008593 #15	Osbpl2 (ENSCGRG00001005341) #16	Hrh3 (ENSCGRG00001000439) #17	Mtg2 (ENSCGRG00001022321) #18	Ss18l1 (ENSCGRG00001020942) #19	Psma7 (ENSCGRG00001019663) #20	Lsm14b (ENSCGRG00001018399) #21	Taf4 (ENSCGRG00001017027) #22	Cdh4 (ENSCGRG00001014899) #23	Cdh26 (ENSCGRG00001011499) #24	Fam217b (ENSCGRG00001009960)	Ppp1r3d (ENSCGRG00001005943)	Sycp2 (ENSCGRG00001005901) #25	Phactr3 (ENSCGRG00001000442) #26	ENSCGRG00001000962	ENSCGRG00001023234	Edn3 (ENSCGRG00001022875) #27	Zfp831 (ENSCGRG00001022524) #28	PRELID3B (ENSCGRG00001020600) #29	Atp5e (ENSCGRG00001020080) #30	Tubb1 (ENSCGRG00001019710) #31	ctsz (ENSCGRG00001019207) #32	Nelfcd (ENSCGRG00001017868) #33
Cricetidae_B	ANCESTRAL SPECIES	4	ENSGT01100000263518.A.a.a.a #8	ENSGT00390000014718	ENSGT01080000257410.C #9	ENSGT00940000160139 #10	ENSGT00530000063835.a #11	ENSGT00400000022086.b.b #12	ENSGT00390000017515.o.b.f #13	ENSGT00940000156537 #14	ENSGT00390000013839 #15	ENSGT00940000158762 #16	ENSGT00940000161502 #17	ENSGT00940000157379 #18	ENSGT00940000159853 #19	ENSGT00940000159695 #20	ENSGT00940000156010 #21	ENSGT00390000011620.a.a.b #22	ENSGT00940000158073 #23	ENSGT00940000161589 #24	ENSGT00940000154543.a	ENSGT00940000161921	ENSGT00530000063859.b #25	ENSGT00940000157562 #26	ENSGT00950000183053.C #27	ENSGT00940000161664 #28	ENSGT00950000182810.A.a.a #29	ENSGT00390000015470 #30	ENSGT00940000159809 #31	ENSGT00940000155569.a.a #32	ENSGT00390000001799 #33	ENSGT01090000260114	ENSGT00940000156300.d #35
Northern American deer mouse	MODERN SPECIES	17	Ntsr1 (ENSPEMG00000019912) #8	ENSPEMG00000031188	Slco4a1 (ENSPEMG00000019875) #9	Gata5 (ENSPEMG00000009349) #10	Rbbp8nl (ENSPEMG00000008846) #11	Cables2 (ENSPEMG00000014665) #12	ENSPEMG00000012806 #13	ENSPEMG00000026336 #14	ENSPEMG00000020024 #15	Osbpl2 (ENSPEMG00000019925) #16	Hrh3 (ENSPEMG00000008738) #17	Mtg2 (ENSPEMG00000008216) #18	Ss18l1 (ENSPEMG00000002000) #19	ENSPEMG00000000274 #20	Lsm14b (ENSPEMG00000017688) #21	Taf4 (ENSPEMG00000015031) #22	Cdh4 (ENSPEMG00000013577) #23	Cdh26 (ENSPEMG00000001082) #24	Fam217b (ENSPEMG00000026646)	Ppp1r3d (ENSPEMG00000013652)	Sycp2 (ENSPEMG00000011694) #25	Phactr3 (ENSPEMG00000014292) #26	Edn3 (ENSPEMG00000029290) #27	Zfp831 (ENSPEMG00000007113) #28	Prelid3b (ENSPEMG00000018251) #29	ENSPEMG00000029167 #30	Tubb1 (ENSPEMG00000025434) #31	Ctsz (ENSPEMG00000016766) #32	Nelfcd (ENSPEMG00000015186) #33	ENSPEMG00000013336	ENSPEMG00000012296 #35
Prairie vole	MODERN SPECIES	357	Mrgbp (ENSMOCG00000000356) #7	Ntsr1 (ENSMOCG00000006208) #8	Slco4a1 (ENSMOCG00000018880) #9	Gata5 (ENSMOCG00000017810) #10	Rbbp8nl (ENSMOCG00000019010) #11	Cables2 (ENSMOCG00000022984) #12	ENSMOCG00000021976 #13	Lama5 (ENSMOCG00000017230) #14	ENSMOCG00000014522 #15	Osbpl2 (ENSMOCG00000021030) #16	Hrh3 (ENSMOCG00000019433) #17	Mtg2 (ENSMOCG00000018038) #18	Ss18l1 (ENSMOCG00000015419) #19	ENSMOCG00000000346 #20	ENSMOCG00000020600 #21	Taf4 (ENSMOCG00000007554) #22	Cdh4 (ENSMOCG00000021512) #23	Cdh26 (ENSMOCG00000015531) #24	Fam217b (ENSMOCG00000014566)	Ppp1r3d (ENSMOCG00000009566)	ENSMOCG00000011369 #25	Phactr3 (ENSMOCG00000018527) #26	Edn3 (ENSMOCG00000012874) #27	Zfp831 (ENSMOCG00000020881) #28	Prelid3b (ENSMOCG00000001444) #29	Atp5e (ENSMOCG00000015267) #30	Tubb1 (ENSMOCG00000020454) #31	Ctsz (ENSMOCG00000000772) #32	Nelfcd (ENSMOCG00000002859) #33	ENSMOCG00000019997 #35	ENSMOCG00000000293
Murinae	ANCESTRAL SPECIES	1	ENSGT00390000014718	ENSGT01080000257410.C #9	ENSGT00960000192285	ENSGT00940000160139 #10	ENSGT00530000063835.a #11	ENSGT00400000022086.b.b #12	ENSGT00390000017515.o.b #13	ENSGT00940000156537 #14	ENSGT00390000013839 #15	ENSGT00940000158762 #16	ENSGT00940000161502 #17	ENSGT00940000157379 #18	ENSGT00940000159853 #19	ENSGT00940000159695 #20	ENSGT00940000156010 #21	ENSGT00390000011620.a.a.b #22	ENSGT00940000158073 #23	ENSGT00940000161589 #24	ENSGT00940000154543.a	ENSGT00940000161921	ENSGT00530000063859.b #25	ENSGT00940000157562 #26	ENSGT00950000183053.C #27	ENSGT00940000161664 #28	ENSGT00950000182810.A.a.a #29	ENSGT00390000015470 #30	ENSGT00940000159809 #31	ENSGT00940000155569.a.a #32	ENSGT00390000001799 #33	ENSGT01090000260114	ENSGT00940000156300.d #35
Mus	ANCESTRAL SPECIES	1	ENSGT01100000263518.A.a.a.a #8	ENSGT01080000257410.C #9	ENSGT00960000192285	ENSGT00940000160139 #10	ENSGT00530000063835.a #11	ENSGT00400000022086.b.b #12	ENSGT00390000017515.o.b #13	ENSGT00940000156537 #14	ENSGT00390000013839 #15	ENSGT00940000158762 #16	ENSGT00940000161502 #17	ENSGT00940000157379 #18	ENSGT00940000159853 #19	ENSGT00940000159695 #20	ENSGT00940000156010 #21	ENSGT00390000011620.a.a.b #22	ENSGT00940000158073 #23	ENSGT00940000161589 #24	ENSGT00940000154543.a	ENSGT00940000161921	ENSGT00530000063859.b #25	ENSGT00940000157562 #26	ENSGT00950000183053.C #27	ENSGT00940000161664 #28	ENSGT00950000182810.A.a.a #29	ENSGT00390000015470 #30	ENSGT00940000159809 #31	ENSGT00940000155569.a.a #32	ENSGT00390000001799 #33	ENSGT01090000260114	ENSGT00940000156300.d #35
Mus_A	ANCESTRAL SPECIES		ENSGT01100000263518.A.a.a.a #8	ENSGT01080000257410.C #9	ENSGT00960000192285	ENSGT00940000160139 #10	ENSGT00530000063835.a #11	ENSGT00400000022086.b.b #12	ENSGT00390000017515.o.b #13	ENSGT00940000156537 #14	ENSGT00390000013839 #15	ENSGT00940000158762 #16	ENSGT00940000161502 #17	ENSGT00940000157379 #18	ENSGT00940000159853 #19	ENSGT00940000159695 #20	ENSGT00940000156010 #21	ENSGT00390000011620.a.a.b #22	ENSGT00940000158073 #23	ENSGT00940000161589 #24	ENSGT00940000154543.a	ENSGT00940000161921	ENSGT00530000063859.b #25	ENSGT00940000157562 #26	ENSGT00950000183053.C #27	ENSGT00940000161664 #28	ENSGT00950000182810.A.a.a.u #29	ENSGT00390000015470 #30	ENSGT00940000159809 #31	ENSGT00940000155569.a.a #32	ENSGT00390000001799 #33	ENSGT01090000260114	ENSGT00940000156300.d #35
Mus_B	ANCESTRAL SPECIES	1	ENSGT01100000263518.A.a.a.a #8	ENSGT01080000257410.C #9	ENSGT00960000192285	ENSGT00940000160139 #10	ENSGT00530000063835.a #11	ENSGT00400000022086.b.b #12	ENSGT00390000017515.o.b #13	ENSGT00940000156537 #14	ENSGT00390000013839 #15	ENSGT00940000158762 #16	ENSGT00940000161502 #17	ENSGT00940000157379 #18	ENSGT00940000159853 #19	ENSGT00940000159695 #20	ENSGT00940000156010 #21	ENSGT00390000011620.a.a.b #22	ENSGT00940000158073 #23	ENSGT00940000161589 #24	ENSGT00940000154543.a	ENSGT00940000161921	ENSGT00530000063859.b #25	ENSGT00940000157562 #26	ENSGT00950000183053.C #27	ENSGT00940000161664 #28	ENSGT00950000182810.A.a.a.u #29	ENSGT00390000015470 #30	ENSGT00940000159809 #31	ENSGT00940000155569.a.a #32	ENSGT00390000001799 #33	ENSGT01090000260114	ENSGT00940000156300.d #35
Mouse	MODERN SPECIES	11	Mrgbp (ENSMUSG00000027569) #7	Ntsr1 (ENSMUSG00000027568) #8	Slco4a1 (ENSMUSG00000038963) #9	Gata5 (ENSMUSG00000015627) #10	Rbbp8nl (ENSMUSG00000038980) #11	Cables2 (ENSMUSG00000038990) #12	Rps21 (ENSMUSG00000039001) #13	Lama5 (ENSMUSG00000015647) #14	Adrm1 (ENSMUSG00000039041) #15	Osbpl2 (ENSMUSG00000039050) #16	Hrh3 (ENSMUSG00000039059) #17	Mtg2 (ENSMUSG00000039069) #18	Ss18l1 (ENSMUSG00000039086) #19	Psma7 (ENSMUSG00000027566) #20	Lsm14b (ENSMUSG00000039108) #21	Taf4 (ENSMUSG00000039117) #22	Cdh4 (ENSMUSG00000000305) #23	Cdh26 (ENSMUSG00000039155) #24	Fam217b (ENSMUSG00000070476)	Ppp1r3d (ENSMUSG00000049999)	Sycp2 (ENSMUSG00000060445) #25	Phactr3 (ENSMUSG00000027525) #26	Zfp931 (ENSMUSG00000078861)	Zfp971 (ENSMUSG00000074519)	Gm14326 (ENSMUSG00000078862)	Zfp972 (ENSMUSG00000074529)	Gm14327 (ENSMUSG00000074521)	Gm14325 (ENSMUSG00000095362)	Gm14322 (ENSMUSG00000078864)	Gm14406 (ENSMUSG00000078865)	Gm14403 (ENSMUSG00000094786)
Mus_C	ANCESTRAL SPECIES	1	ENSGT01100000263518.A.a.a.a #8	ENSGT01080000257410.C #9	ENSGT00960000192285	ENSGT00940000160139 #10	ENSGT00530000063835.a #11	ENSGT00400000022086.b.b #12	ENSGT00390000017515.o.b #13	ENSGT00940000156537 #14	ENSGT00390000013839 #15	ENSGT00940000158762 #16	ENSGT00940000161502 #17	ENSGT00940000157379 #18	ENSGT00940000159853 #19	ENSGT00940000159695 #20	ENSGT00940000156010 #21	ENSGT00390000011620.a.a.b #22	ENSGT00940000158073 #23	ENSGT00940000161589 #24	ENSGT00940000154543.a	ENSGT00940000161921	ENSGT00530000063859.b #25	ENSGT00940000157562 #26	ENSGT00950000183053.C #27	ENSGT00940000161664 #28	ENSGT00950000182810.A.a.a.u #29	ENSGT00390000015470 #30	ENSGT00940000159809 #31	ENSGT00940000155569.a.a #32	ENSGT00390000001799 #33	ENSGT01090000260114	ENSGT00940000156300.d #35
spretus	MODERN SPECIES	11	Mrgbp (MGP_SPRETEiJ_G0025707) #7	Ntsr1 (MGP_SPRETEiJ_G0025706) #8	Slco4a1 (MGP_SPRETEiJ_G0025705) #9	Gata5 (MGP_SPRETEiJ_G0025704) #10	Rbbp8nl (MGP_SPRETEiJ_G0025703) #11	Cables2 (MGP_SPRETEiJ_G0025702) #12	Rps21 (MGP_SPRETEiJ_G0025701) #13	Lama5 (MGP_SPRETEiJ_G0025700) #14	MGP_SPRETEiJ_G0025699 #15	Osbpl2 (MGP_SPRETEiJ_G0025698) #16	Hrh3 (MGP_SPRETEiJ_G0025697) #17	MGP_SPRETEiJ_G0025696 #18	Ss18l1 (MGP_SPRETEiJ_G0025695) #19	Psma7 (MGP_SPRETEiJ_G0025694) #20	Lsm14b (MGP_SPRETEiJ_G0025693) #21	MGP_SPRETEiJ_G0025692 #22	Cdh4 (MGP_SPRETEiJ_G0025691) #23	Cdh26 (MGP_SPRETEiJ_G0025690) #24	Fam217b (MGP_SPRETEiJ_G0025689)	Ppp1r3d (MGP_SPRETEiJ_G0025688)	Sycp2 (MGP_SPRETEiJ_G0025687) #25	Phactr3 (MGP_SPRETEiJ_G0025686) #26	Edn3 (MGP_SPRETEiJ_G0025685) #27	Zfp831 (MGP_SPRETEiJ_G0025684) #28	Prelid3b (MGP_SPRETEiJ_G0025683) #29	Atp5e (MGP_SPRETEiJ_G0025682) #30	Tubb1 (MGP_SPRETEiJ_G0025681) #31	Ctsz (MGP_SPRETEiJ_G0025680) #32	Nelfcd (MGP_SPRETEiJ_G0025679) #33	MGP_SPRETEiJ_G0025678	Gnas (MGP_SPRETEiJ_G0025677) #35
Steppe mouse	MODERN SPECIES	3150	Ogfr (ENSMSIG00000017554)	Mrgbp (ENSMSIG00000017522) #7	Ntsr1 (ENSMSIG00000017500) #8	Slco4a1 (ENSMSIG00000017476) #9	ENSMSIG00000017437	Gata5 (ENSMSIG00000017417) #10	Rbbp8nl (ENSMSIG00000017371) #11	Cables2 (ENSMSIG00000017347) #12	ENSMSIG00000017324 #13	ENSMSIG00000016398 #16	ENSMSIG00000016249 #17	ENSMSIG00000016190 #18	ENSMSIG00000016142 #19	Psma7 (ENSMSIG00000016080) #20	ENSMSIG00000016029 #21	ENSMSIG00000015731 #22	ENSMSIG00000015713	Cdh4 (ENSMSIG00000015601) #23	ENSMSIG00000015591	Cdh26 (ENSMSIG00000015463) #24	Fam217b (ENSMSIG00000015440)	Ppp1r3d (ENSMSIG00000015432)	Sycp2 (ENSMSIG00000015299) #25	Phactr3 (ENSMSIG00000015132) #26	ENSMSIG00000015117
Ryukyu mouse	MODERN SPECIES	11	Col9a3 (MGP_CAROLIEiJ_G0024784)	Ogfr (MGP_CAROLIEiJ_G0024783)	Mrgbp (MGP_CAROLIEiJ_G0024782) #7	Ntsr1 (MGP_CAROLIEiJ_G0024781) #8	MGP_CAROLIEiJ_G0024780 #9	Gata5 (MGP_CAROLIEiJ_G0024779) #10	MGP_CAROLIEiJ_G0024778 #12	MGP_CAROLIEiJ_G0024777 #14	MGP_CAROLIEiJ_G0024776 #15	MGP_CAROLIEiJ_G0024775 #16	Hrh3 (MGP_CAROLIEiJ_G0024774) #17	MGP_CAROLIEiJ_G0024773 #18	Ss18l1 (MGP_CAROLIEiJ_G0024772) #19	Psma7 (MGP_CAROLIEiJ_G0024771) #20	Lsm14b (MGP_CAROLIEiJ_G0024770) #21	MGP_CAROLIEiJ_G0024769 #22	Cdh4 (MGP_CAROLIEiJ_G0024768) #23	Ppp1r3d (MGP_CAROLIEiJ_G0024767)	Phactr3 (MGP_CAROLIEiJ_G0024765) #26	Edn3 (MGP_CAROLIEiJ_G0024764) #27	Zfp831 (MGP_CAROLIEiJ_G0024763) #28	Prelid3b (MGP_CAROLIEiJ_G0024762) #29	Atp5e (MGP_CAROLIEiJ_G0024761) #30	Tubb1 (MGP_CAROLIEiJ_G0024760) #31	Ctsz (MGP_CAROLIEiJ_G0024759) #32	Nelfcd (MGP_CAROLIEiJ_G0024758) #33	MGP_CAROLIEiJ_G0024757	Gnas (MGP_CAROLIEiJ_G0024756) #35	Npepl1 (MGP_CAROLIEiJ_G0024755)	Stx16 (MGP_CAROLIEiJ_G0024754)	Vapb (MGP_CAROLIEiJ_G0024753)
Shrew mouse	MODERN SPECIES	16	Ntsr1 (MGP_PahariEiJ_G0026228) #8	Slco4a1 (MGP_PahariEiJ_G0026227) #9	Gata5 (MGP_PahariEiJ_G0026226) #10	Rbbp8nl (MGP_PahariEiJ_G0026225) #11	Cables2 (MGP_PahariEiJ_G0026224) #12	Rps21 (MGP_PahariEiJ_G0026223) #13	Lama5 (MGP_PahariEiJ_G0026222) #14	MGP_PahariEiJ_G0026221 #15	MGP_PahariEiJ_G0026220 #15	Osbpl2 (MGP_PahariEiJ_G0026219) #16	Hrh3 (MGP_PahariEiJ_G0026218) #17	MGP_PahariEiJ_G0026217 #18	Ss18l1 (MGP_PahariEiJ_G0026216) #19	Psma7 (MGP_PahariEiJ_G0026215) #20	Lsm14b (MGP_PahariEiJ_G0026214) #21	MGP_PahariEiJ_G0026213 #22	Cdh4 (MGP_PahariEiJ_G0026212) #23	Cdh26 (MGP_PahariEiJ_G0026211) #24	Fam217b (MGP_PahariEiJ_G0026210)	Ppp1r3d (MGP_PahariEiJ_G0026209)	Sycp2 (MGP_PahariEiJ_G0026208) #25	Phactr3 (MGP_PahariEiJ_G0026207) #26	Edn3 (MGP_PahariEiJ_G0026206) #27	Zfp831 (MGP_PahariEiJ_G0026205) #28	Prelid3b (MGP_PahariEiJ_G0026204) #29	MGP_PahariEiJ_G0026202 #31	Ctsz (MGP_PahariEiJ_G0026201) #32	Nelfcd (MGP_PahariEiJ_G0026200) #33	MGP_PahariEiJ_G0026199	Gnas (MGP_PahariEiJ_G0026198) #35	Npepl1 (MGP_PahariEiJ_G0026197)
Rat	MODERN SPECIES	13	ENSRNOG00000064180	Slco4a1 (ENSRNOG00000053430) #9	AC115322.1 (ENSRNOG00000054405)	Gata5 (ENSRNOG00000058983) #10	Rbbp8nl (ENSRNOG00000057245) #11	Cables2 (ENSRNOG00000051420) #12	Rps21 (ENSRNOG00000060449) #13	Lama5 (ENSRNOG00000053691) #14	Adrm1 (ENSRNOG00000055984) #15	Osbpl2 (ENSRNOG00000057756) #16	Hrh3 (ENSRNOG00000061153) #17	Mtg2 (ENSRNOG00000059919) #18	Ss18l1 (ENSRNOG00000060010) #19	Psma7 (ENSRNOG00000056853) #20	Lsm14b (ENSRNOG00000054557) #21	Taf4 (ENSRNOG00000054497) #22	Cdh4 (ENSRNOG00000052405) #23	Cdh26 (ENSRNOG00000053332) #24	Ppp1r3d (ENSRNOG00000053869)	Fam217b (ENSRNOG00000053607)	AC127963.2 (ENSRNOG00000056063) #34	Sycp2 (ENSRNOG00000061690) #25	LOC120101827 (ENSRNOG00000048080)	Phactr3 (ENSRNOG00000057996) #26	ENSRNOG00000067266	ENSRNOG00000063156	ENSRNOG00000070854	ENSRNOG00000066844	ENSRNOG00000066687	ENSRNOG00000062563	ENSRNOG00000066179
Upper Galilee mountains blind mole rat	MODERN SPECIES	1229	Ogfr (ENSNGAG00000000640)	Mrgbp (ENSNGAG00000021492) #7	Ntsr1 (ENSNGAG00000021420) #8	Slco4a1 (ENSNGAG00000021326) #9	Cables2 (ENSNGAG00000019648) #12	ENSNGAG00000017987 #13	Lama5 (ENSNGAG00000010780) #14	ENSNGAG00000001016 #15	Osbpl2 (ENSNGAG00000000345) #16	Hrh3 (ENSNGAG00000019357) #17	Mtg2 (ENSNGAG00000018854) #18	Ss18l1 (ENSNGAG00000018258) #19	Psma7 (ENSNGAG00000017073) #20	Lsm14b (ENSNGAG00000016550) #21	ENSNGAG00000016305 #21	Taf4 (ENSNGAG00000015546) #22	Cdh4 (ENSNGAG00000014651) #23
Lesser Egyptian jerboa	MODERN SPECIES	171	Ogfr (ENSJJAG00000020054)	Mrgbp (ENSJJAG00000019784) #7	Ntsr1 (ENSJJAG00000019264) #8	Slco4a1 (ENSJJAG00000018715) #9	Gata5 (ENSJJAG00000018164) #10	Cables2 (ENSJJAG00000017409) #12	Rps21 (ENSJJAG00000016454) #13	Lama5 (ENSJJAG00000014033) #14	ENSJJAG00000011363 #15	Osbpl2 (ENSJJAG00000011104) #16	Hrh3 (ENSJJAG00000010764) #17	Mtg2 (ENSJJAG00000010435) #18	Ss18l1 (ENSJJAG00000009378) #19	ENSJJAG00000008311 #20	Lsm14b (ENSJJAG00000012728) #21	Taf4 (ENSJJAG00000011875) #22	Cdh4 (ENSJJAG00000010912) #23	Cdh26 (ENSJJAG00000007415) #24	Fam217b (ENSJJAG00000004859)	ENSJJAG00000002434 #25	Phactr3 (ENSJJAG00000022387) #26	Edn3 (ENSJJAG00000021058) #27	Zfp831 (ENSJJAG00000020817) #28	ENSJJAG00000020252 #29	Atp5e (ENSJJAG00000019610) #30	Tubb1 (ENSJJAG00000019495) #31	Ctsz (ENSJJAG00000019111) #32	Nelfcd (ENSJJAG00000018738) #33	ENSJJAG00000018466	ENSJJAG00000018225	ENSJJAG00000017931
Kangaroo rat	MODERN SPECIES	448	ENSDORG00000027453 #7	Ntsr1 (ENSDORG00000025445) #8	Slco4a1 (ENSDORG00000001161) #9	ENSDORG00000026178 #10	Rbbp8nl (ENSDORG00000007635) #11	ENSDORG00000025770 #12	Rps21 (ENSDORG00000007632) ##13	Lama5 (ENSDORG00000016589) #14	ENSDORG00000016587 #15	Osbpl2 (ENSDORG00000016585) #16	Hrh3 (ENSDORG00000003326) #17	Mtg2 (ENSDORG00000003325) #18	Ss18l1 (ENSDORG00000003324) #19	Psma7 (ENSDORG00000016684) #20	Lsm14b (ENSDORG00000016683) #21	Taf4 (ENSDORG00000006800) #22	Cdh4 (ENSDORG00000000209) #23
Lagomorpha	ANCESTRAL SPECIES																	ENSGT00390000011620.a.a.b #22
Pika	MODERN SPECIES	1057																ENSOPRG00000004667 #22
Rabbit	MODERN SPECIES	1094																ENSOCUG00000022377 #22
Laurasiatheria	ANCESTRAL SPECIES	17	ENSGT00390000014718	ENSGT01080000257410.C #9	ENSGT00960000192285	ENSGT00940000160139 #10	ENSGT00530000063835.a #11	ENSGT00400000022086.b.b #12	ENSGT00390000017515.o.b #13	ENSGT00940000156537 #14	ENSGT00390000013839 #15	ENSGT00940000158762 #16	ENSGT00940000161502 #17	ENSGT00940000157379 #18	ENSGT00940000159853 #19	ENSGT00940000159695 #20	ENSGT00940000156010 #21	ENSGT00390000011620.a.a.b #22	ENSGT00940000158073 #23	ENSGT00940000161589 #24	ENSGT00940000154543.a	ENSGT00940000161921	ENSGT00530000063859.b #25	ENSGT00940000157562 #26	ENSGT00950000183053.C #27	ENSGT00940000161664 #28	ENSGT00950000182810.A.a.a #29	ENSGT00390000015470 #30	ENSGT00940000159809 #31	ENSGT00940000155569.a.a #32	ENSGT00390000001799 #33	ENSGT01090000260114	ENSGT00940000156300.d #35
Eulipotyphla	ANCESTRAL SPECIES																	ENSGT00390000011620.a.a.b #22
Hedgehog	MODERN SPECIES	2766																ENSEEUG00000008763 #22
Laurasiatheria_a	ANCESTRAL SPECIES	18	ENSGT00390000014718	ENSGT01080000257410.C #9	ENSGT00960000192285	ENSGT00940000160139 #10	ENSGT00530000063835.a #11	ENSGT00400000022086.b.b #12	ENSGT00390000017515.o.b #13	ENSGT00940000156537 #14	ENSGT00390000013839 #15	ENSGT00940000158762 #16	ENSGT00940000161502 #17	ENSGT00940000157379 #18	ENSGT00940000159853 #19	ENSGT00940000159695 #20	ENSGT00940000156010 #21	ENSGT00390000011620.a.a.b #22	ENSGT00940000158073 #23	ENSGT00940000161589 #24	ENSGT00940000154543.a	ENSGT00940000161921	ENSGT00530000063859.b #25	ENSGT00940000157562 #26	ENSGT00950000183053.C #27	ENSGT00940000161664 #28	ENSGT00950000182810.A.a.a #29	ENSGT00390000015470 #30	ENSGT00940000159809 #31	ENSGT00940000155569.a.a #32	ENSGT00390000001799 #33	ENSGT00940000156300.c.a ##35	ENSGT01100000264672
Artiodactyla	ANCESTRAL SPECIES	18	ENSGT01100000263518.A.a.a.a #8	ENSGT00390000014718	ENSGT01080000257410.C #9	ENSGT00940000160139 #10	ENSGT00530000063835.a #11	ENSGT00400000022086.b.b #12	ENSGT00390000017515.o.b #13	ENSGT00940000156537 #14	ENSGT00390000013839 #15	ENSGT00940000158762 #16	ENSGT00940000161502 #17	ENSGT00940000157379 #18	ENSGT00940000159853 #19	ENSGT00940000159695 #20	ENSGT00940000156010 #21	ENSGT00390000011620.a.a.b #22	ENSGT00940000158073 #23	ENSGT00940000161589 #24	ENSGT00940000154543.a	ENSGT00940000161921	ENSGT00530000063859.b #25	ENSGT00940000157562 #26	ENSGT00950000183053.C #27	ENSGT00940000161664 #28	ENSGT00950000182810.A.a.a #29	ENSGT00390000015470 #30	ENSGT00940000159809 #31	ENSGT00940000155569.a.a #32	ENSGT00390000001799 #33	ENSGT00940000156300.d #35	ENSGT01090000260114
Suina	ANCESTRAL SPECIES	9	ENSGT01100000263518.A.a.a.a #8	ENSGT00390000014718	ENSGT01080000257410.C #9	ENSGT00940000160139 #10	ENSGT00530000063835.a #11	ENSGT00400000022086.b.b #12	ENSGT00390000017515.o.b #13	ENSGT00940000156537 #14	ENSGT00390000013839 #15	ENSGT00940000158762 #16	ENSGT00940000161502 #17	ENSGT00940000157379 #18	ENSGT00940000159853 #19	ENSGT00940000159695 #20	ENSGT00940000156010 #21	ENSGT00390000011620.a.a.b #22	ENSGT00940000158073 #23	ENSGT00940000154543.a	ENSGT00940000161921	ENSGT00530000063859.b #25	ENSGT00940000157562 #26	ENSGT00950000183053.C #27	ENSGT00940000161664 #28	ENSGT00950000182810.A.a.a #29	ENSGT00390000015470 #30	ENSGT00940000159809 #31	ENSGT00940000155569.a.a #32	ENSGT00390000001799 #33	ENSGT01090000260114	ENSGT00940000156300.d #35	ENSGT00390000006634 #36
Pig	MODERN SPECIES	8	NTSR1 (ENSSSCG00000038278) #8	ENSSSCG00000040565	SLCO4A1 (ENSSSCG00000039419) #9	GATA5 (ENSSSCG00000007538) #10	RBBP8NL (ENSSSCG00000007539) #11	CABLES2 (ENSSSCG00000007540) #12	RPS21 (ENSSSCG00000021825) #13	LAMA5 (ENSSSCG00000032761) #14	ADRM1 (ENSSSCG00000038718) #15	OSBPL2 (ENSSSCG00000036835) #16	HRH3 (ENSSSCG00000038578) #17	MTG2 (ENSSSCG00000037369) #18	SS18L1 (ENSSSCG00000035448) #19	PSMA7 (ENSSSCG00000033332) #20	LSM14B (ENSSSCG00000026052) #21	TAF4 (ENSSSCG00000024694) #22	ENSSSCG00000046508	CDH4 (ENSSSCG00000025784) #23	FAM217B (ENSSSCG00000007531)	PPP1R3D (ENSSSCG00000007530)	SYCP2 (ENSSSCG00000007529) #25	PHACTR3 (ENSSSCG00000007528) #26	ENSSSCG00000007527 #27	ZNF831 (ENSSSCG00000007526) #28	ENSSSCG00000007525 #29	ENSSSCG00000060915 #30	TUBB1 (ENSSSCG00000007523) #31	CTSZ (ENSSSCG00000007522) #32	NELFCD (ENSSSCG00000007521) #33	ENSSSCG00000032457	ENSSSCG00000058036
Chacoan peccary	MODERN SPECIES	27									ADRM1 (ENSCWAG00000000013) #15	OSBPL2 (ENSCWAG00000000041) #16	HRH3 (ENSCWAG00000000080) #17	MTG2 (ENSCWAG00000000101) #18	SS18L1 (ENSCWAG00000000125) #19	PSMA7 (ENSCWAG00000000146) #20	LSM14B (ENSCWAG00000000175) #21	TAF4 (ENSCWAG00000000252) #22	CDH4 (ENSCWAG00000000431) #23
Artiodactyla_a	ANCESTRAL SPECIES	16	ENSGT01100000263518.A.a.a.a #8	ENSGT01080000257410.C #9	ENSGT00390000014718	ENSGT00940000160139 #10	ENSGT00530000063835.a #11	ENSGT00400000022086.b.b #12	ENSGT00390000017515.o.b #13	ENSGT00940000156537 #14	ENSGT00390000013839 #15	ENSGT00940000158762 #16	ENSGT00940000161502 #17	ENSGT00940000157379 #18	ENSGT00940000159853 #19	ENSGT00940000159695 #20	ENSGT00940000156010 #21	ENSGT00390000011620.a.a.b #22	ENSGT00940000158073 #23	ENSGT00940000161589 #24	ENSGT00940000154543.a	ENSGT00940000161921	ENSGT00530000063859.b #25	ENSGT00940000157562 #26	ENSGT00950000183053.C #27	ENSGT00940000161664 #28	ENSGT00950000182810.A.a.a #29	ENSGT00390000015470 #30	ENSGT00940000159809 #31	ENSGT00940000155569.a.a #32	ENSGT00390000001799 #33	ENSGT00940000156300.d #35	ENSGT01090000260114
Camelidae	ANCESTRAL SPECIES	10	ENSGT00940000161930	ENSGT00390000018730.A	ENSGT00390000007823 #7	ENSGT01100000263518.A.a.a.a #8	ENSGT00390000014718	ENSGT01080000257410.C #9	ENSGT00940000160139 #10	ENSGT00400000022086.b.b #12	ENSGT00390000017515.o.b #13	ENSGT00390000013839 #15	ENSGT00940000161502 #17	ENSGT00940000157379 #18	ENSGT00940000159853 #19	ENSGT00940000159695 #20	ENSGT00940000156010 #21	ENSGT00390000011620.a.a.b #22	ENSGT00940000158073 #23	ENSGT00940000161589 #24	ENSGT00530000063859.b #25	ENSGT00940000154543.a	ENSGT00940000161921	ENSGT00940000157562 #26	ENSGT00950000183053.C #27	ENSGT00940000161664 #28	ENSGT00950000182810.A.a.a #29	ENSGT00390000015470 #30	ENSGT00940000159809 #31	ENSGT00940000155569.a.a #32	ENSGT00390000001799 #33	ENSGT00940000156300.d #35	ENSGT01090000260114
Arabian camel	MODERN SPECIES	10	ENSCDRG00005006839	OGFR (ENSCDRG00005006813)	MRGBP (ENSCDRG00005006775) #7	NTSR1 (ENSCDRG00005006734) #8	ENSCDRG00005006702	SLCO4A1 (ENSCDRG00005006674) #9	GATA5 (ENSCDRG00005006581) #10	ENSCDRG00005006256 #12	RPS21 (ENSCDRG00005006197) #13	ADRM1 (ENSCDRG00005005112) #15	HRH3 (ENSCDRG00005005077) #17	MTG2 (ENSCDRG00005005059) #18	SS18L1 (ENSCDRG00005005016) #19	PSMA7 (ENSCDRG00005004975) #20	LSM14B (ENSCDRG00005004926) #21	TAF4 (ENSCDRG00005004789) #22	CDH4 (ENSCDRG00005004411) #23	CDH26 (ENSCDRG00005004313) #24	ENSCDRG00005004290	PPP1R3D (ENSCDRG00005004276)	PHACTR3 (ENSCDRG00005003583) #26	EDN3 (ENSCDRG00005003447) #27	ZNF831 (ENSCDRG00005019675) #28	PRELID3B (ENSCDRG00005019644) #29	ATP5F1E (ENSCDRG00005019637) #30	TUBB1 (ENSCDRG00005019625) #31	CTSZ (ENSCDRG00005019619) #32	NELFCD (ENSCDRG00005019582) #33	ENSCDRG00005019549	GNAS (ENSCDRG00005019285) #35	ENSCDRG00005019259 #36
Artiodactyla_b	ANCESTRAL SPECIES	17	ENSGT01100000263518.A.a.a.a #8	ENSGT01080000257410.C #9	ENSGT00390000014718	ENSGT00940000160139 #10	ENSGT00530000063835.a #11	ENSGT00400000022086.b.b #12	ENSGT00390000017515.o.b #13	ENSGT00940000156537 #14	ENSGT00390000013839 #15	ENSGT00940000158762 #16	ENSGT00940000161502 #17	ENSGT00940000157379 #18	ENSGT00940000159853 #19	ENSGT00940000159695 #20	ENSGT00940000156010 #21	ENSGT00390000011620.a.a.b #22	ENSGT00940000158073 #23	ENSGT00390000018145.wc.a.a	ENSGT00940000161589 #24	ENSGT00940000154543.a	ENSGT00940000161921	ENSGT00530000063859.b #25	ENSGT00940000157562 #26	ENSGT00950000183053.C #27	ENSGT00940000161664 #28	ENSGT00950000182810.A.a.a #29	ENSGT00390000015470.m.b #30	ENSGT00940000159809 #31	ENSGT00940000155569.a.a #32	ENSGT00390000001799.i.a #33	ENSGT00940000156300.d #35
Cetacea	ANCESTRAL SPECIES	3	ENSGT01100000263518.A.a.a.a #8	ENSGT01080000257410.C #9	ENSGT00390000014718	ENSGT00940000160139 #10	ENSGT00530000063835.a #11	ENSGT00400000022086.b.b #12	ENSGT00390000017515.o.b #13	ENSGT00940000156537 #14	ENSGT00390000013839 #15	ENSGT00940000158762 #16	ENSGT00940000161502 #17	ENSGT00940000157379 #18	ENSGT00940000159853.l #19	ENSGT00940000159695 #20	ENSGT00940000156010 #21	ENSGT00390000011620.a.a.b #22	ENSGT00940000158073 #23	ENSGT00940000168632	ENSGT00940000154543.a	ENSGT00940000161921	ENSGT00530000063859.b #25	ENSGT00940000157562 #26	ENSGT00950000183053.C #27	ENSGT00940000161664 #28	ENSGT00950000182810.A.a.a #29	ENSGT00390000015470.m.b #30	ENSGT00940000159809 #31	ENSGT00940000155569.a.a #32	ENSGT00390000001799.i.a #33	ENSGT00940000156300.d #35	ENSGT01090000260114
Odontoceti	ANCESTRAL SPECIES	3	ENSGT01100000263518.A.a.a.a #8	ENSGT01080000257410.C #9	ENSGT00390000014718	ENSGT00940000160139 #10	ENSGT00530000063835.a #11	ENSGT00400000022086.b.b #12	ENSGT00390000017515.o.b #13	ENSGT00940000156537 #14	ENSGT00390000013839 #15	ENSGT00940000158762 #16	ENSGT00940000161502 #17	ENSGT00940000157379 #18	ENSGT00940000159853.l #19	ENSGT00940000159695 #20	ENSGT00940000156010 #21	ENSGT00390000011620.a.a.b #22	ENSGT00940000158073 #23	ENSGT00940000168632	ENSGT00940000154543.a	ENSGT00940000161921	ENSGT00530000063859.b #25	ENSGT00940000157562 #26	ENSGT00950000183053.C #27	ENSGT00940000161664 #28	ENSGT00950000182810.A.a.a #29	ENSGT00390000015470.m.b #30	ENSGT00940000159809 #31	ENSGT00940000155569.a.a #32	ENSGT00390000001799.i.a #33	ENSGT00940000156300.d #35	ENSGT01090000260114
Odontoceti_a	ANCESTRAL SPECIES	3	ENSGT01100000263518.A.a.a.a #8	ENSGT01080000257410.C #9	ENSGT00390000014718	ENSGT00940000160139 #10	ENSGT00530000063835.a #11	ENSGT00400000022086.b.b #12	ENSGT00390000017515.o.b #13	ENSGT00940000156537 #14	ENSGT00390000013839 #15	ENSGT00940000158762 #16	ENSGT00940000161502 #17	ENSGT00940000157379 #18	ENSGT00940000159853.l #19	ENSGT00940000159695 #20	ENSGT00940000156010 #21	ENSGT00390000011620.a.a.b #22	ENSGT00940000158073 #23	ENSGT00940000168632	ENSGT00940000154543.a	ENSGT00940000161921	ENSGT00530000063859.b #25	ENSGT00940000157562 #26	ENSGT00950000183053.C #27	ENSGT00940000161664 #28	ENSGT00950000182810.A.a.a #29	ENSGT00390000015470.m.b #30	ENSGT00940000159809 #31	ENSGT00940000155569.a.a.j #32	ENSGT00390000001799.i.a #33	ENSGT00940000156300.d #35	ENSGT01090000260114
Odontoceti_b	ANCESTRAL SPECIES	3	ENSGT01100000263518.A.a.a.a #8	ENSGT01080000257410.C #9	ENSGT00390000014718	ENSGT00940000160139 #10	ENSGT00530000063835.a #11	ENSGT00400000022086.b.b #12	ENSGT00390000017515.o.b #13	ENSGT00940000156537 #14	ENSGT00390000013839 #15	ENSGT00940000158762 #16	ENSGT00940000161502 #17	ENSGT00940000157379 #18	ENSGT00940000159853.l #19	ENSGT00940000159695 #20	ENSGT00940000156010 #21	ENSGT00390000011620.a.a.b #22	ENSGT00940000158073 #23	ENSGT00940000168632	ENSGT00940000154543.a	ENSGT00940000161921	ENSGT00530000063859.b #25	ENSGT00940000157562 #26	ENSGT00950000183053.C #27	ENSGT00940000161664 #28	ENSGT00950000182810.A.a.a #29	ENSGT00390000015470.m.b #30	ENSGT00940000159809 #31	ENSGT00940000155569.a.a.j #32	ENSGT00390000001799.i.a #33	ENSGT00940000156300.d #35	ENSGT01090000260114
Monodontidae	ANCESTRAL SPECIES	1	ENSGT01100000263518.A.a.a.a #8	ENSGT01080000257410.C #9	ENSGT00390000014718	ENSGT00940000160139 #10	ENSGT00530000063835.a #11	ENSGT00400000022086.b.b #12	ENSGT00390000017515.o.b #13	ENSGT00940000156537 #14	ENSGT00390000013839 #15	ENSGT00940000158762 #16	ENSGT00940000161502 #17	ENSGT00940000157379 #18	ENSGT00940000159853.l #19	ENSGT00940000159695 #20	ENSGT00940000156010 #21	ENSGT00390000011620.a.a.b #22	ENSGT00940000158073 #23	ENSGT00940000168632	ENSGT00940000154543.a	ENSGT00940000161921	ENSGT00530000063859.b #25	ENSGT00940000157562 #26	ENSGT00950000183053.C #27	ENSGT00940000161664 #28	ENSGT00950000182810.A.a.a #29	ENSGT00390000015470.m.b #30	ENSGT00940000159809 #31	ENSGT00940000155569.a.a.j #32	ENSGT00390000001799.i.a #33	ENSGT00940000156300.d #35	ENSGT01090000260114
Narwhal	MODERN SPECIES	299	NTSR1 (ENSMMNG00015002962) #8	SLCO4A1 (ENSMMNG00015002992) #9	ENSMMNG00015003015	GATA5 (ENSMMNG00015003060) #10	RBBP8NL (ENSMMNG00015003088) #11	CABLES2 (ENSMMNG00015003141) #12	RPS21 (ENSMMNG00015003199) #13	ENSMMNG00015003249 #14	ADRM1 (ENSMMNG00015003347) #15	OSBPL2 (ENSMMNG00015003407) #16	HRH3 (ENSMMNG00015003462) #17	MTG2 (ENSMMNG00015003488) #18	SS18L1 (ENSMMNG00015003519) #19	PSMA7 (ENSMMNG00015003566) #20	LSM14B (ENSMMNG00015003641) #21	TAF4 (ENSMMNG00015003692) #22	CDH4 (ENSMMNG00015003737) #23	ENSMMNG00015003795	FAM217B (ENSMMNG00015003840)	PPP1R3D (ENSMMNG00015003856)	SYCP2 (ENSMMNG00015003943) #25	PHACTR3 (ENSMMNG00015004056) #26	ENSMMNG00015004125	EDN3 (ENSMMNG00015004148) #27	ZNF831 (ENSMMNG00015004179) #28	ENSMMNG00015004193	PRELID3B (ENSMMNG00015004211) #29	ATP5F1E (ENSMMNG00015004225) #30	TUBB1 (ENSMMNG00015004239) #31	CTSZ (ENSMMNG00015004260) #32	ENSMMNG00015004284 #33
Beluga whale	MODERN SPECIES	36	NTSR1 (ENSDLEG00000006619) #8	SLCO4A1 (ENSDLEG00000006657) #9	ENSDLEG00000006849	GATA5 (ENSDLEG00000006862) #10	RBBP8NL (ENSDLEG00000006866) #11	CABLES2 (ENSDLEG00000006872) #12	RPS21 (ENSDLEG00000006898) ##13	LAMA5 (ENSDLEG00000006920) #14	ADRM1 (ENSDLEG00000007029) #15	OSBPL2 (ENSDLEG00000007046) #16	HRH3 (ENSDLEG00000007062) #17	MTG2 (ENSDLEG00000007066) #18	SS18L1 (ENSDLEG00000007157) #19	PSMA7 (ENSDLEG00000007179) #20	LSM14B (ENSDLEG00000007209) #21	TAF4 (ENSDLEG00000000226) #22	CDH4 (ENSDLEG00000000382) #23	FAM217B (ENSDLEG00000000421)	PPP1R3D (ENSDLEG00000000434)	SYCP2 (ENSDLEG00000000502) #25	PHACTR3 (ENSDLEG00000000651) #26	EDN3 (ENSDLEG00000000784) #27	ZNF831 (ENSDLEG00000000808) #28	PRELID3B (ENSDLEG00000000826) #29	ENSDLEG00000000845 #30	TUBB1 (ENSDLEG00000000861) #31	CTSZ (ENSDLEG00000000883) #32	NELFCD (ENSDLEG00000000907) #33	GNAS (ENSDLEG00000000944) ##35	ENSDLEG00000000970	ENSDLEG00000000999
Vaquita	MODERN SPECIES	6	MRGBP (ENSPSNG00000021374) #7	NTSR1 (ENSPSNG00000021395) #8	SLCO4A1 (ENSPSNG00000021425) #9	ENSPSNG00000021451	GATA5 (ENSPSNG00000021484) #10	RBBP8NL (ENSPSNG00000021519) #11	CABLES2 (ENSPSNG00000021622) #12	ENSPSNG00000009820 #13	ADRM1 (ENSPSNG00000013077) #15	OSBPL2 (ENSPSNG00000013262) #16	HRH3 (ENSPSNG00000013409) #17	MTG2 (ENSPSNG00000013478) #18	SS18L1 (ENSPSNG00000013560) #19	PSMA7 (ENSPSNG00000013641) #20	LSM14B (ENSPSNG00000013767) #21	TAF4 (ENSPSNG00000013933) #22	CDH4 (ENSPSNG00000014451) #23	ENSPSNG00000014879	FAM217B (ENSPSNG00000014948)	PPP1R3D (ENSPSNG00000014976)	ENSPSNG00000015007 #25	PHACTR3 (ENSPSNG00000015277) #26	EDN3 (ENSPSNG00000015678) #27	PRELID3B (ENSPSNG00000016155) #29	ENSPSNG00000016225 #30	TUBB1 (ENSPSNG00000016273) #31	CTSZ (ENSPSNG00000016349) #32	ENSPSNG00000016419 #33	ENSPSNG00000016734 #35	ENSPSNG00000017316	ENSPSNG00000017471 #36
Dolphin	MODERN SPECIES	2168																TAF4 (ENSTTRG00000009139) #22	CDH4 (ENSTTRG00000009069) #23
Sperm whale	MODERN SPECIES	5	MRGBP (ENSPCTG00005010826) #7	NTSR1 (ENSPCTG00005010880) #8	SLCO4A1 (ENSPCTG00005010945) #9	ENSPCTG00005011020	GATA5 (ENSPCTG00005011063) #10	RBBP8NL (ENSPCTG00005011159) #11	CABLES2 (ENSPCTG00005011308) #12	ENSPCTG00005011426 #13	ADRM1 (ENSPCTG00005014185) #15	OSBPL2 (ENSPCTG00005014366) #16	HRH3 (ENSPCTG00005014655) #17	MTG2 (ENSPCTG00005014701) #18	SS18L1 (ENSPCTG00005014758) #19	PSMA7 (ENSPCTG00005014933) #20	LSM14B (ENSPCTG00005015013) #21	TAF4 (ENSPCTG00005015206) #22	CDH4 (ENSPCTG00005015443) #23	ENSPCTG00005015819	FAM217B (ENSPCTG00005015882)	PPP1R3D (ENSPCTG00005015919)	PHACTR3 (ENSPCTG00005016503) #26	EDN3 (ENSPCTG00005016895) #27	ZNF831 (ENSPCTG00005017120) #28	C14H20orf85 (ENSPCTG00005017200)	PCK1 (ENSPCTG00005017262)	CTCFL (ENSPCTG00005017424)	NELFCD (ENSPCTG00005017957) #33	CTSZ (ENSPCTG00005018064) #32	GNAS (ENSPCTG00005018125) ##35	ENSPCTG00005018682	ANKRD60 (ENSPCTG00005018795)
Blue whale	MODERN SPECIES	6	MRGBP (ENSBMSG00010011280) #7	NTSR1 (ENSBMSG00010011293) #8	SLCO4A1 (ENSBMSG00010011305) #9	ENSBMSG00010011317	GATA5 (ENSBMSG00010011332) #10	RBBP8NL (ENSBMSG00010011353) #11	ENSBMSG00010011386 #12	RPS21 (ENSBMSG00010011407) #13	ADRM1 (ENSBMSG00010011687) #15	OSBPL2 (ENSBMSG00010011717) #16	HRH3 (ENSBMSG00010011747) #17	MTG2 (ENSBMSG00010011756) #18	SS18L1 (ENSBMSG00010011768) #19	PSMA7 (ENSBMSG00010011783) #20	LSM14B (ENSBMSG00010011814) #21	TAF4 (ENSBMSG00010011906) #22	CDH4 (ENSBMSG00010011951) #23	ENSBMSG00010011984	FAM217B (ENSBMSG00010011998)	PPP1R3D (ENSBMSG00010012002)	PHACTR3 (ENSBMSG00010012068) #26	EDN3 (ENSBMSG00010012138) #27	ZNF831 (ENSBMSG00010012169) #28	PRELID3B (ENSBMSG00010012185) #29	ATP5F1E (ENSBMSG00010012196) #30	TUBB1 (ENSBMSG00010012204) #31	CTSZ (ENSBMSG00010012214) #32	ENSBMSG00010012230 #33	ENSBMSG00010014082 #35	ENSBMSG00010015067	ENSBMSG00010015157 #36
Pecora	ANCESTRAL SPECIES	9	ENSGT01100000263518.A.a.a.a #8	ENSGT01080000257410.C #9	ENSGT00390000014718	ENSGT00940000160139 #10	ENSGT00530000063835.a #11	ENSGT00400000022086.b.b #12	ENSGT00390000017515.o.b #13	ENSGT00940000156537 #14	ENSGT00390000013839 #15	ENSGT00940000158762 #16	ENSGT00940000161502 #17	ENSGT00940000157379 #18	ENSGT00940000159853 #19	ENSGT00940000159695 #20	ENSGT00940000156010 #21	ENSGT00390000011620.a.a.b #22	ENSGT00940000158073 #23	ENSGT00390000018145.wc.a.a	ENSGT00940000161589 #24	ENSGT00940000154543.a	ENSGT00940000161921	ENSGT00530000063859.b #25	ENSGT00940000157562 #26	ENSGT00950000183053.C #27	ENSGT00940000161664 #28	ENSGT00950000182810.A.a.a #29	ENSGT00390000015470.m.b #30	ENSGT00940000159809 #31	ENSGT00940000155569.a.a #32	ENSGT00390000001799.i.a #33	ENSGT00940000156300.d #35
Percora_a	ANCESTRAL SPECIES	10	ENSGT01100000263518.A.a.a.a #8	ENSGT00390000014718	ENSGT01080000257410.C #9	ENSGT00940000160139 #10	ENSGT00530000063835.a #11	ENSGT00400000022086.b.b #12	ENSGT00390000017515.o.b #13	ENSGT00940000156537 #14	ENSGT00390000013839 #15	ENSGT00940000158762 #16	ENSGT00940000161502 #17	ENSGT00940000157379 #18	ENSGT00940000159853 #19	ENSGT00940000159695 #20	ENSGT00940000156010 #21	ENSGT00390000011620.a.a.b #22	ENSGT00940000158073 #23	ENSGT00940000161589 #24	ENSGT00940000154543.a	ENSGT00940000161921	ENSGT00530000063859.b #25	ENSGT00940000157562 #26	ENSGT00950000183053.C #27	ENSGT00940000161664 #28	ENSGT00950000182810.A.a.a #29	ENSGT00390000015470.m.b.b #30	ENSGT00940000159809 #31	ENSGT00940000155569.a.a #32	ENSGT00390000001799.i.a #33	ENSGT00940000156300.d #35	ENSGT01090000260114
Bovidae	ANCESTRAL SPECIES	10	ENSGT01100000263518.A.a.a.a #8	ENSGT01080000257410.C #9	ENSGT00390000014718	ENSGT00940000160139 #10	ENSGT00530000063835.a #11	ENSGT00400000022086.b.b #12	ENSGT00390000017515.o.b #13	ENSGT00940000156537 #14	ENSGT00390000013839 #15	ENSGT00940000158762 #16	ENSGT00940000161502 #17	ENSGT00940000157379 #18	ENSGT00940000159853 #19	ENSGT00940000159695 #20	ENSGT00940000156010 #21	ENSGT00390000011620.a.a.b #22	ENSGT00940000158073 #23	ENSGT00940000161589 #24	ENSGT00940000154543.a	ENSGT00940000161921	ENSGT00530000063859.b #25	ENSGT00940000157562 #26	ENSGT00950000183053.C #27	ENSGT00940000161664 #28	ENSGT00950000182810.A.a.a #29	ENSGT00390000015470.m.b.b #30	ENSGT00940000159809 #31	ENSGT00940000155569.a.a #32	ENSGT00390000001799.i.a #33	ENSGT00940000156300.d #35	ENSGT01090000260114
Bovinae	ANCESTRAL SPECIES	23														ENSGT00940000159695.g #20	ENSGT00940000156010 #21	ENSGT00390000011620.a.a.b #22	ENSGT00940000158073 #23	ENSGT00940000161589 #24	ENSGT00940000154543.a	ENSGT00940000161921	ENSGT00530000063859.b #25	ENSGT00940000157562.e #26	ENSGT00950000183053.C #27	ENSGT00940000161664 #28	ENSGT00950000182810.A.a.a.o.a #29	ENSGT00390000015470.m.b.b #30	ENSGT00940000159809 #31	ENSGT00940000155569.a.a #32	ENSGT00390000001799.i.a #33	ENSGT01090000260114	ENSGT00940000156300.d #35
Bos	ANCESTRAL SPECIES	24														ENSGT00940000159695.g #20	ENSGT00940000156010 #21	ENSGT00390000011620.a.a.b #22	ENSGT00940000158073 #23	ENSGT00940000161589 #24	ENSGT00940000154543.a	ENSGT00940000161921	ENSGT00530000063859.b #25	ENSGT00940000157562.e #26	ENSGT00950000183053.C #27	ENSGT00940000161664 #28	ENSGT00950000182810.A.a.a.o.a #29	ENSGT00390000015470.m.b.b.d #30	ENSGT00940000159809 #31	ENSGT00940000155569.a.a #32	ENSGT00390000001799.i.a #33	ENSGT00940000156300.d #35	ENSGT01090000260114
Bos_a	ANCESTRAL SPECIES	7	ENSGT01100000263518.A.a.a.a #8	ENSGT01080000257410.C #9	ENSGT00390000014718	ENSGT00940000160139 #10	ENSGT00530000063835.a #11	ENSGT00400000022086.b.b #12	ENSGT00390000017515.o.b #13	ENSGT00940000156537 #14	ENSGT00390000013839 #15	ENSGT00940000158762 #16	ENSGT00940000161502 #17	ENSGT00940000157379 #18	ENSGT00940000159853 #19	ENSGT00940000159695.g #20	ENSGT00940000156010 #21	ENSGT00390000011620.a.a.b #22	ENSGT00940000158073 #23	ENSGT00940000161589 #24	ENSGT00940000154543.a	ENSGT00940000161921	ENSGT00530000063859.b #25	ENSGT00940000157562.e #26	ENSGT00950000183053.C #27	ENSGT00950000182810.A.a.a.o.a #29	ENSGT00390000015470.m.b.b.d #30	ENSGT00940000159809 #31	ENSGT00940000155569.a.a #32	ENSGT00390000001799.i.a #33	ENSGT00940000156300.d #35	ENSGT01090000260114	ENSGT00390000006634 #36
Domestic yak	MODERN SPECIES	3	ENSBGRG00000020718	NTSR1 (ENSBGRG00000020731) #8	SLCO4A1 (ENSBGRG00000020768) #9	GATA5 (ENSBGRG00000020941) #10	ENSBGRG00000021000 #11	CABLES2 (ENSBGRG00000021073) #12	RPS21 (ENSBGRG00000021116) #13	LAMA5 (ENSBGRG00000021195) #14	ADRM1 (ENSBGRG00000022694) #15	OSBPL2 (ENSBGRG00000022810) #16	HRH3 (ENSBGRG00000022906) #17	MTG2 (ENSBGRG00000022940) #18	SS18L1 (ENSBGRG00000022962) #19	ENSBGRG00000023084 #20	LSM14B (ENSBGRG00000023122) #21	TAF4 (ENSBGRG00000023255) #22	CDH4 (ENSBGRG00000023355) #23	CDH26 (ENSBGRG00000024093) #24	FAM217B (ENSBGRG00000024168)	PPP1R3D (ENSBGRG00000024222)	SYCP2 (ENSBGRG00000024249) #25	ENSBGRG00000024487	ENSBGRG00000024502 #26	EDN3 (ENSBGRG00000024625) #27	ENSBGRG00000024759 #29	ENSBGRG00000024809 #30	TUBB1 (ENSBGRG00000024823) #31	CTSZ (ENSBGRG00000024860) #32	ENSBGRG00000024898 #33	ENSBGRG00000025028 #35	ENSBGRG00000025497
Wild yak	MODERN SPECIES	2738																TAF4 (ENSBMUG00000008592) #22	CDH4 (ENSBMUG00000008457) #23
Bos_b	ANCESTRAL SPECIES	26														ENSGT00940000159695.g #20	ENSGT00940000156010 #21	ENSGT00390000011620.a.a.b #22	ENSGT00940000158073 #23	ENSGT00940000161589 #24	ENSGT00940000154543.a	ENSGT00940000161921	ENSGT00530000063859.b #25	ENSGT00940000157562.e #26	ENSGT00950000183053.C #27	ENSGT00940000161664 #28	ENSGT00950000182810.A.a.a.o.a #29	ENSGT00390000015470.m.b.b.d #30	ENSGT00940000159809 #31	ENSGT00940000155569.a.a #32	ENSGT00390000001799.i.a #33	ENSGT00940000156300.d #35	ENSGT01090000260114
Cow	MODERN SPECIES	4	NTSR1 (ENSBTAG00000021727) #8	SLCO4A1 (ENSBTAG00000016388) #9	ENSBTAG00000051754	GATA5 (ENSBTAG00000047944) #10	RBBP8NL (ENSBTAG00000003163) #11	CABLES2 (ENSBTAG00000020797) #12	RPS21 (ENSBTAG00000020795) #13	LAMA5 (ENSBTAG00000003061) #14	ADRM1 (ENSBTAG00000003058) #15	OSBPL2 (ENSBTAG00000017402) #16	HRH3 (ENSBTAG00000031625) #17	MTG2 (ENSBTAG00000014442) #18	SS18L1 (ENSBTAG00000014438) #19	PSMA7 (ENSBTAG00000005127) #20	LSM14B (ENSBTAG00000021558) #21	TAF4 (ENSBTAG00000047991) #22	CDH4 (ENSBTAG00000015058) #23	CDH26 (ENSBTAG00000020261) #24	FAM217B (ENSBTAG00000045509)	PPP1R3D (ENSBTAG00000027397)	SYCP2 (ENSBTAG00000003608) #25	PHACTR3 (ENSBTAG00000015080) #26	EDN3 (ENSBTAG00000012109) #27	ZNF831 (ENSBTAG00000011940) #28	PRELID3B (ENSBTAG00000004402) #29	ATP5F1E (ENSBTAG00000039208) #30	TUBB1 (ENSBTAG00000018785) #31	CTSZ (ENSBTAG00000018784) #32	NELFCD (ENSBTAG00000018783) #33	GNAS (ENSBTAG00000052413) #35	GNAS (ENSBTAG00000047223) #36
Hybrid Bos Indicus	MODERN SPECIES	4	MRGBP (ENSBIXG00005006040) #7	NTSR1 (ENSBIXG00005020774) #8	ENSBIXG00005020790	SLCO4A1 (ENSBIXG00005020865) #9	GATA5 (ENSBIXG00005006262) #10	RBBP8NL (ENSBIXG00005020989) #11	CABLES2 (ENSBIXG00005006264) #12	RPS21 (ENSBIXG00005003553) #13	ADRM1 (ENSBIXG00005003573) #15	HRH3 (ENSBIXG00005007067) #17	MTG2 (ENSBIXG00005021227) #18	SS18L1 (ENSBIXG00005021240) #19	ENSBIXG00005021267 #20	LSM14B (ENSBIXG00005021304) #21	OSBPL2 (ENSBIXG00005021374) #16	TAF4 (ENSBIXG00005021394) #22	CDH4 (ENSBIXG00005021467) #23	CDH26 (ENSBIXG00005003632) #24	ENSBIXG00005021566	PPP1R3D (ENSBIXG00005000015)	ENSBIXG00005000007	SYCP2 (ENSBIXG00005021751) #25	ENSBIXG00005021908 #26	EDN3 (ENSBIXG00005021971) #27	ZNF831 (ENSBIXG00005007218) #28	PRELID3B (ENSBIXG00005022046) #29	ENSBIXG00005003739 #30	TUBB1 (ENSBIXG00005003743) #31	CTSZ (ENSBIXG00005022102) #32	ENSBIXG00005022164 #33	ENSBIXG00005022205
American bison	MODERN SPECIES	3089				GATA5 (ENSBBBG00000021683) #10	RBBP8NL (ENSBBBG00000021697) #11	CABLES2 (ENSBBBG00000007197) #12	RPS21 (ENSBBBG00000021727) #13	LAMA5 (ENSBBBG00000023435) #14	ADRM1 (ENSBBBG00000023624) #15	OSBPL2 (ENSBBBG00000023688) #16	ENSBBBG00000008484 #17	MTG2 (ENSBBBG00000023710) #18	SS18L1 (ENSBBBG00000023728) #19	ENSBBBG00000023734 #20	LSM14B (ENSBBBG00000023774) #21	TAF4 (ENSBBBG00000023791) #22	CDH4 (ENSBBBG00000023802) #23	CDH26 (ENSBBBG00000008691) #24	FAM217B (ENSBBBG00000008802)	PPP1R3D (ENSBBBG00000023860)	ENSBBBG00000023882 #25	ENSBBBG00000023967 #26	EDN3 (ENSBBBG00000008863) #27	ENSBBBG00000024074 #29	ENSBBBG00000024085 #30	TUBB1 (ENSBBBG00000024089) #31	CTSZ (ENSBBBG00000008647) #32	ENSBBBG00000024184 #33	ENSBBBG00000008650	ENSBBBG00000024382 #35	ENSBBBG00000024413 #36
Caprinae	ANCESTRAL SPECIES	21														ENSGT00940000159695 #20	ENSGT00940000156010 #21	ENSGT00390000011620.a.a.b #22	ENSGT00940000158073 #23	ENSGT00940000161589 #24	ENSGT00940000154543.a	ENSGT00940000161921	ENSGT00530000063859.b #25	ENSGT00940000157562 #26	ENSGT00950000183053.C #27	ENSGT00940000161664 #28	ENSGT00950000182810.A.a.a.r.a #29	ENSGT00390000015470.m.b.a.b #30	ENSGT00940000159809 #31	ENSGT00940000155569.a.a #32	ENSGT00390000001799.i.a #33	ENSGT00940000156300.d #35	ENSGT01090000260114
Rambouillet Sheep	MODERN SPECIES	4	OGFR (ENSOARG00020005520)	MRGBP (ENSOARG00020005556) #7	NTSR1 (ENSOARG00020005581) #8	GATA5 (ENSOARG00020005701) #10	RBBP8NL (ENSOARG00020005734) #11	CABLES2 (ENSOARG00020005784) #12	RPS21 (ENSOARG00020005843) #13	LAMA5 (ENSOARG00020005901) #14	ADRM1 (ENSOARG00020006278) #15	OSBPL2 (ENSOARG00020006432) #16	HRH3 (ENSOARG00020006602) #17	MTG2 (ENSOARG00020006674) #18	SS18L1 (ENSOARG00020006781) #19	PSMA7 (ENSOARG00020007065) #20	ENSOARG00020007136 #21	TAF4 (ENSOARG00020007283) #22	CDH4 (ENSOARG00020007577) #23	CDH26 (ENSOARG00020007709) #24	FAM217B (ENSOARG00020007830)	PPP1R3D (ENSOARG00020007845)	SYCP2 (ENSOARG00020007921) #25	PHACTR3 (ENSOARG00020009712) #26	EDN3 (ENSOARG00020009904) #27	PRELID3B (ENSOARG00020010008) #29	ENSOARG00020010128 #30	TUBB1 (ENSOARG00020010178) #31	CTSZ (ENSOARG00020010226) #32	NELFCD (ENSOARG00020010385) #33	ENSOARG00020010739 #35	ENSOARG00020011802	ENSOARG00020011940
Goat	MODERN SPECIES	4	ENSCHIG00000014569 #7	NTSR1 (ENSCHIG00000026075) #8	SLCO4A1 (ENSCHIG00000020363) #9	GATA5 (ENSCHIG00000014469) #10	RBBP8NL (ENSCHIG00000025293) #11	CABLES2 (ENSCHIG00000016200) #12	RPS21 (ENSCHIG00000013467) #13	LAMA5 (ENSCHIG00000011048) #14	ADRM1 (ENSCHIG00000015510) #15	OSBPL2 (ENSCHIG00000021852) #16	HRH3 (ENSCHIG00000006885) #17	MTG2 (ENSCHIG00000022564) #18	SS18L1 (ENSCHIG00000024560) #19	PSMA7 (ENSCHIG00000014692) #20	ENSCHIG00000010284 #21	TAF4 (ENSCHIG00000012545) #22	CDH4 (ENSCHIG00000007626) #23	CDH26 (ENSCHIG00000027057) #24	FAM217B (ENSCHIG00000011525)	PPP1R3D (ENSCHIG00000012459)	SYCP2 (ENSCHIG00000013442) #25	PHACTR3 (ENSCHIG00000021023) #26	EDN3 (ENSCHIG00000017167) #27	ZNF831 (ENSCHIG00000026441) #28	ENSCHIG00000013750 #29	ENSCHIG00000023373 #30	TUBB1 (ENSCHIG00000025696) #31	CTSZ (ENSCHIG00000011423) #32	ENSCHIG00000021753 #33	GNAS (ENSCHIG00000011782) #35	ENSCHIG00000013806
Siberian musk deer	MODERN SPECIES	1193	NTSR1 (ENSMMSG00000020812) #8	ENSMMSG00000020792	SLCO4A1 (ENSMMSG00000020739) #9	GATA5 (ENSMMSG00000020681) #10	RBBP8NL (ENSMMSG00000020610) #11	CABLES2 (ENSMMSG00000020551) #12	RPS21 (ENSMMSG00000020504) #13	LAMA5 (ENSMMSG00000020211) #14	ADRM1 (ENSMMSG00000020092) #15	OSBPL2 (ENSMMSG00000020018) #16	HRH3 (ENSMMSG00000019990) #17	MTG2 (ENSMMSG00000019960) #18	SS18L1 (ENSMMSG00000019914) #19	PSMA7 (ENSMMSG00000019883) #20	LSM14B (ENSMMSG00000019784) #21	TAF4 (ENSMMSG00000019546) #22	CDH4 (ENSMMSG00000019459) #23	CDH26 (ENSMMSG00000019362) #24	FAM217B (ENSMMSG00000019344)	PPP1R3D (ENSMMSG00000019328)	ENSMMSG00000019309	PHACTR3 (ENSMMSG00000018838) #26	EDN3 (ENSMMSG00000018744) #27	ZNF831 (ENSMMSG00000018706) #28	PRELID3B (ENSMMSG00000018651) #29	ENSMMSG00000018619 #30	ENSMMSG00000018608	TUBB1 (ENSMMSG00000018536) #31	CTSZ (ENSMMSG00000018517) #32	ENSMMSG00000018476 #33	ENSMMSG00000018427
Yarkand deer	MODERN SPECIES	15	MRGBP (ENSCHYG00000024816) #7	NTSR1 (ENSCHYG00000024836) #8	SLCO4A1 (ENSCHYG00000024856) #9	ENSCHYG00000024915	GATA5 (ENSCHYG00000024947) #10	RBBP8NL (ENSCHYG00000025000) #11	ENSCHYG00000025117 #12	ENSCHYG00000025132 #13	ADRM1 (ENSCHYG00000025424) #15	OSBPL2 (ENSCHYG00000025489) #16	HRH3 (ENSCHYG00000025598) #17	MTG2 (ENSCHYG00000025616) #18	SS18L1 (ENSCHYG00000025661) #19	PSMA7 (ENSCHYG00000025756) #20	LSM14B (ENSCHYG00000025784) #21	TAF4 (ENSCHYG00000025826) #22	CDH4 (ENSCHYG00000025855) #23	ENSCHYG00000013703	CDH26 (ENSCHYG00000013755) #24	ENSCHYG00000014153	PPP1R3D (ENSCHYG00000014208)	SYCP2 (ENSCHYG00000014285) #25	PHACTR3 (ENSCHYG00000014507) #26	EDN3 (ENSCHYG00000014695) #27	ZNF831 (ENSCHYG00000014868) #28	PRELID3B (ENSCHYG00000014946) #29	ENSCHYG00000015158 #30	TUBB1 (ENSCHYG00000015260) #31	CTSZ (ENSCHYG00000015333) #32	ENSCHYG00000015411 #33	ENSCHYG00000016008 #35
Laurasiatheria_b	ANCESTRAL SPECIES	19	ENSGT00390000014718	ENSGT01080000257410.C #9	ENSGT00960000192285	ENSGT00940000160139 #10	ENSGT00530000063835.a #11	ENSGT00400000022086.b.b #12	ENSGT00390000017515.o.b #13	ENSGT00940000156537 #14	ENSGT00390000013839 #15	ENSGT00940000158762 #16	ENSGT00940000161502 #17	ENSGT00940000157379 #18	ENSGT00940000159853 #19	ENSGT00940000159695 #20	ENSGT00940000156010 #21	ENSGT00390000011620.a.a.b #22	ENSGT00940000158073 #23	ENSGT00940000161589 #24	ENSGT00940000154543.a	ENSGT00940000161921	ENSGT00530000063859.b #25	ENSGT00940000157562 #26	ENSGT00950000183053.C #27	ENSGT00940000161664 #28	ENSGT00950000182810.A.a.a #29	ENSGT00390000015470 #30	ENSGT00940000159809 #31	ENSGT00940000155569.a.a #32	ENSGT00390000001799 #33	ENSGT01100000264672	ENSGT00940000156300.d #35
Carnivora	ANCESTRAL SPECIES	20	ENSGT00390000014718	ENSGT01080000257410.C #9	ENSGT00960000192285	ENSGT00940000160139 #10	ENSGT00530000063835.a #11	ENSGT00400000022086.b.b #12	ENSGT00390000017515.o.b #13	ENSGT00940000156537 #14	ENSGT00390000013839 #15	ENSGT00940000158762 #16	ENSGT00940000161502 #17	ENSGT00940000157379 #18	ENSGT00940000159853 #19	ENSGT00940000159695 #20	ENSGT00940000156010 #21	ENSGT00390000011620.a.a.b #22	ENSGT00940000158073 #23	ENSGT00940000154543.a	ENSGT00940000157562 #26	ENSGT00950000183053.C #27	ENSGT00940000161664 #28	ENSGT00950000182810.A.a.a #29	ENSGT00390000015470 #30	ENSGT00940000159809 #31	ENSGT00940000155569.a.a #32	ENSGT00390000001799 #33	ENSGT01100000264672	ENSGT00940000156300.d #35	ENSGT01090000260114	ENSGT00390000006634 #36	ENSGT00530000063255.A
Caniformia	ANCESTRAL SPECIES		ENSGT00390000014718	ENSGT01080000257410.C #9	ENSGT00960000192285	ENSGT00940000160139 #10	ENSGT00530000063835.a #11	ENSGT00400000022086.b.b #12	ENSGT00390000017515.o.b #13	ENSGT00940000156537 #14	ENSGT00390000013839 #15	ENSGT00940000158762 #16	ENSGT00940000161502 #17	ENSGT00940000157379 #18	ENSGT00940000159853 #19	ENSGT00940000159695 #20	ENSGT00940000156010 #21	ENSGT00390000011620.a.a.b #22	ENSGT00940000158073 #23	ENSGT00940000154543.a	ENSGT00940000157562 #26	ENSGT00950000183053.C #27	ENSGT00940000161664 #28	ENSGT00950000182810.A.a.a #29	ENSGT00390000015470 #30	ENSGT00940000159809 #31	ENSGT00940000155569.a.a #32	ENSGT00390000001799 #33	ENSGT01100000264672	ENSGT00940000156300.d #35	ENSGT01090000260114	ENSGT00390000006634 #36	ENSGT00530000063255.A
Canidae	ANCESTRAL SPECIES	41	ENSGT00390000014718	ENSGT01080000257410.C #9	ENSGT00940000160139 #10	ENSGT00530000063835.a #11	ENSGT00400000022086.b.b #12	ENSGT00390000017515.o.b #13	ENSGT00390000017515.p ##13	ENSGT00940000156537 #14	ENSGT00390000013839 #15	ENSGT00940000158762 #16	ENSGT00940000161502 #17	ENSGT00940000157379 #18	ENSGT00940000159853 #19	ENSGT00940000159695 #20	ENSGT00940000156010 #21	ENSGT00390000011620.a.a.b #22	ENSGT00940000158073 #23	ENSGT00940000161589 #24	ENSGT00940000154543.a	ENSGT00940000161921	ENSGT00530000063859.b #25	ENSGT00940000157562 #26	ENSGT00950000183053.C #27	ENSGT00940000161664 #28	ENSGT00950000182810.A.a.a #29	ENSGT00390000015470 #30	ENSGT00940000159809 #31	ENSGT00940000155569.a.a #32	ENSGT00390000001799 #33	ENSGT01090000260114	ENSGT00940000156300.d #35
Canis_lupus	ANCESTRAL SPECIES	13	ENSGT00390000014718	ENSGT01080000257410.C #9	ENSGT00940000160139 #10	ENSGT00530000063835.a #11	ENSGT00400000022086.b.b #12	ENSGT00390000017515.o.b #13	ENSGT00390000017515.p ##13	ENSGT00940000156537 #14	ENSGT00390000013839 #15	ENSGT00940000158762 #16	ENSGT00940000161502 #17	ENSGT00940000157379 #18	ENSGT00940000159853 #19	ENSGT00940000159695 #20	ENSGT00940000156010 #21	ENSGT00390000011620.a.a.b #22	ENSGT00940000158073 #23	ENSGT00940000161589 #24	ENSGT00940000154543.a	ENSGT00940000161921	ENSGT00530000063859.b #25	ENSGT00940000157562 #26	ENSGT00950000183053.C #27	ENSGT00940000161664 #28	ENSGT00950000182810.A.a.a #29	ENSGT00390000015470 #30	ENSGT00940000159809 #31	ENSGT00940000155569.a.a #32	ENSGT00390000001799 #33	ENSGT01090000260114	ENSGT00940000156300.d #35
Dog	MODERN SPECIES	16	MRGBP (ENSCAFG00845017766) #7	NTSR1 (ENSCAFG00845017702) #8	ENSCAFG00845017679	SLCO4A1 (ENSCAFG00845017528) #9	GATA5 (ENSCAFG00845017212) #10	RBBP8NL (ENSCAFG00845017078) #11	CABLES2 (ENSCAFG00845016981) #12	RPS21 (ENSCAFG00845016932) #13	ADRM1 (ENSCAFG00845016538) #15	OSBPL2 (ENSCAFG00845016342) #16	HRH3 (ENSCAFG00845016267) #17	MTG2 (ENSCAFG00845016227) #18	SS18L1 (ENSCAFG00845016170) #19	ENSCAFG00845016116 #20	LSM14B (ENSCAFG00845015999) #21	TAF4 (ENSCAFG00845015879) #22	CDH4 (ENSCAFG00845015748) #23	CDH26 (ENSCAFG00845015611) #24	ENSCAFG00845015558	PPP1R3D (ENSCAFG00845015533)	SYCP2 (ENSCAFG00845014669) #25	PHACTR3 (ENSCAFG00845014288) #26	EDN3 (ENSCAFG00845014217) #27	ZNF831 (ENSCAFG00845014176) #28	PRELID3B (ENSCAFG00845014151) #29	ATP5F1E (ENSCAFG00845014129) #30	TUBB1 (ENSCAFG00845014111) #31	CTSZ (ENSCAFG00845014050) #32	NELFCD (ENSCAFG00845013969) #33	ENSCAFG00845013928	GNAS (ENSCAFG00845013733) #35
Dingo	MODERN SPECIES	343	NTSR1 (ENSCAFG00020001009) #8	ENSCAFG00020001006	SLCO4A1 (ENSCAFG00020000949) #9	GATA5 (ENSCAFG00020000926) #10	RBBP8NL (ENSCAFG00020000919) #11	CABLES2 (ENSCAFG00020000888) #12	ENSCAFG00020000870 ##13	ENSCAFG00020000144 #14	ADRM1 (ENSCAFG00020000118) #15	OSBPL2 (ENSCAFG00020000096) #16	HRH3 (ENSCAFG00020022208) #17	MTG2 (ENSCAFG00020022198) #18	SS18L1 (ENSCAFG00020022196) #19	PSMA7 (ENSCAFG00020022159) #20	LSM14B (ENSCAFG00020022150) #21	TAF4 (ENSCAFG00020022127) #22	CDH4 (ENSCAFG00020022116) #23	CDH26 (ENSCAFG00020022110) #24	FAM217B (ENSCAFG00020022109)	PHACTR3 (ENSCAFG00020022081) #26	EDN3 (ENSCAFG00020022074) #27	ZNF831 (ENSCAFG00020022068) #28	PRELID3B (ENSCAFG00020022066) #29	ATP5F1E (ENSCAFG00020022064) #30	TUBB1 (ENSCAFG00020022060) #31	CTSZ (ENSCAFG00020022056) #32	NELFCD (ENSCAFG00020022050) #33	ENSCAFG00020022047	GNAS (ENSCAFG00020022045) #35	ENSCAFG00020022044	ENSCAFG00020022038 #36
Red fox	MODERN SPECIES	108	MRGBP (ENSVVUG00000015402) #7	NTSR1 (ENSVVUG00000015408) #8	SLCO4A1 (ENSVVUG00000015410) #9	ENSVVUG00000015436	GATA5 (ENSVVUG00000015452) #10	RBBP8NL (ENSVVUG00000015483) #11	ENSVVUG00000015488 #12	ENSVVUG00000015503 #14	ADRM1 (ENSVVUG00000015782) #15	OSBPL2 (ENSVVUG00000015789) #16	HRH3 (ENSVVUG00000015800) #17	MTG2 (ENSVVUG00000015810) #18	SS18L1 (ENSVVUG00000015825) #19	PSMA7 (ENSVVUG00000015857) #20	LSM14B (ENSVVUG00000015920) #21	TAF4 (ENSVVUG00000015939) #22	CDH4 (ENSVVUG00000016015) #23	CDH26 (ENSVVUG00000016039) #24	ENSVVUG00000016075	PPP1R3D (ENSVVUG00000016077)	SYCP2 (ENSVVUG00000016091) #25	PHACTR3 (ENSVVUG00000016145) #26	EDN3 (ENSVVUG00000016155) #27	ZNF831 (ENSVVUG00000016165) #28	PRELID3B (ENSVVUG00000016188) #29	ATP5F1E (ENSVVUG00000016192) #30	TUBB1 (ENSVVUG00000016193) #31	CTSZ (ENSVVUG00000016198) #32	NELFCD (ENSVVUG00000016260) #33	GNAS (ENSVVUG00000016830) #35	ENSVVUG00000016833
Caniformia_b	ANCESTRAL SPECIES		ENSGT00390000014718	ENSGT01080000257410.C #9	ENSGT00960000192285	ENSGT00940000160139 #10	ENSGT00530000063835.a #11	ENSGT00400000022086.b.b #12	ENSGT00390000017515.o.b #13	ENSGT00940000156537 #14	ENSGT00390000013839 #15	ENSGT00940000158762 #16	ENSGT00940000161502 #17	ENSGT00940000157379 #18	ENSGT00940000159853 #19	ENSGT00940000159695 #20	ENSGT00940000156010 #21	ENSGT00390000011620.a.a.b #22	ENSGT00940000158073 #23	ENSGT00940000161589 #24	ENSGT00940000154543.a	ENSGT00940000161921	ENSGT00530000063859.b #25	ENSGT00940000157562 #26	ENSGT00950000183053.C #27	ENSGT00940000161664 #28	ENSGT00950000182810.A.a.a #29	ENSGT00390000015470 #30	ENSGT00940000159809 #31	ENSGT00940000155569.a.a #32	ENSGT00390000001799 #33	ENSGT01100000264672	ENSGT00940000156300.d #35
Ursidae	ANCESTRAL SPECIES	14	ENSGT01100000263518.A.a.a.a #8	ENSGT01080000257410.C #9	ENSGT00960000192285	ENSGT00390000014718	ENSGT00940000160139 #10	ENSGT00530000063835.a #11	ENSGT00400000022086.b.b #12	ENSGT00390000017515.o.b.x #13	ENSGT00940000156537 #14	ENSGT00940000158762 #16	ENSGT00940000161502 #17	ENSGT00940000157379 #18	ENSGT00940000159853 #19	ENSGT00940000159695.d #20	ENSGT00940000156010 #21	ENSGT00390000011620.a.a.b #22	ENSGT00940000158073 #23	ENSGT00940000161589 #24	ENSGT00940000154543.a	ENSGT00940000161921	ENSGT00530000063859.b #25	ENSGT00940000157562 #26	ENSGT00950000183053.C #27	ENSGT00940000161664 #28	ENSGT00950000182810.A.a.a #29	ENSGT00390000015470 #30	ENSGT00940000159809 #31	ENSGT00940000155569.a.a #32	ENSGT00390000001799 #33	ENSGT00940000156300.d #35	ENSGT01090000260114
Giant Panda	MODERN SPECIES	4	COL9A3 (ENSAMEG00000017342)	ENSAMEG00000029718	ENSAMEG00000025015 #7	SLCO4A1 (ENSAMEG00000023949) #9	ENSAMEG00000025108	GATA5 (ENSAMEG00000028627) #10	RBBP8NL (ENSAMEG00000017386) #11	ENSAMEG00000017392 #12	ENSAMEG00000024061 ##13	ENSAMEG00000013512 #16	HRH3 (ENSAMEG00000013427) #17	MTG2 (ENSAMEG00000026455) #18	SS18L1 (ENSAMEG00000013466) #19	PSMA7 (ENSAMEG00000013451) #20	LSM14B (ENSAMEG00000013430) #21	TAF4 (ENSAMEG00000024016) #22	CDH4 (ENSAMEG00000012866) #23	CDH26 (ENSAMEG00000012384) #24	SYCP2 (ENSAMEG00000012412) #25	PHACTR3 (ENSAMEG00000027213) #26	EDN3 (ENSAMEG00000012458) #27	ZNF831 (ENSAMEG00000028490) #28	PRELID3B (ENSAMEG00000012470) #29	ATP5F1E (ENSAMEG00000019808) #30	ENSAMEG00000028999 #31	CTSZ (ENSAMEG00000012483) #32	NELFCD (ENSAMEG00000012493) #33	ENSAMEG00000031308 #35	ENSAMEG00000024248	ENSAMEG00000019810 #36	NPEPL1 (ENSAMEG00000012570)
Ursus	ANCESTRAL SPECIES	106	ENSGT00940000161930	ENSGT00390000018730.A	ENSGT00390000007823 #7	ENSGT01100000263518.A.a.a.a #8	ENSGT00390000014718	ENSGT01080000257410.C #9	ENSGT00400000022086.b.b #12	ENSGT00390000017515.o.b.x #13	ENSGT00940000156537 #14	ENSGT00940000158762 #16	ENSGT00940000161502 #17	ENSGT00940000157379 #18	ENSGT00940000159853 #19	ENSGT00940000159695.d #20	ENSGT00940000156010 #21	ENSGT00390000011620.a.a.b #22	ENSGT00940000158073 #23	ENSGT00940000161589 #24	ENSGT00940000154543.a	ENSGT00940000161921	ENSGT00530000063859.b #25	ENSGT00940000157562 #26
Polar bear	MODERN SPECIES	148	SLC17A9 (ENSUMAG00000022304)	GID8 (ENSUMAG00000022317)	DIDO1 (ENSUMAG00000022326)	ENSUMAG00000022355	ENSUMAG00000022356	ENSUMAG00000022360 #7	NTSR1 (ENSUMAG00000022365) #8	ENSUMAG00000022371	ENSUMAG00000022375 #10	CABLES2 (ENSUMAG00000022377) #12	ENSUMAG00000022396 #16	MTG2 (ENSUMAG00000022407) #18	SS18L1 (ENSUMAG00000000050) #19	PSMA7 (ENSUMAG00000000149) #20	LSM14B (ENSUMAG00000000480) #21	TAF4 (ENSUMAG00000000503) #22	CDH4 (ENSUMAG00000000805) #23	CDH26 (ENSUMAG00000000888) #24	ENSUMAG00000001001	SYCP2 (ENSUMAG00000001014) #25	PHACTR3 (ENSUMAG00000001100) #26
Mustelinae	ANCESTRAL SPECIES	58	ENSGT01100000263518.A.a.a.a #8	ENSGT01080000257410.C #9	ENSGT00390000014718	ENSGT00940000160139 #10	ENSGT00530000063835.a #11	ENSGT00400000022086.b.b #12	ENSGT00390000017515.o.b #13	ENSGT00940000156537 #14	ENSGT00390000013839 #15	ENSGT00940000158762 #16	ENSGT00940000161502 #17	ENSGT00940000157379 #18	ENSGT00940000159853 #19	ENSGT00940000159695 #20	ENSGT00940000156010 #21	ENSGT00390000011620.a.a.b #22	ENSGT00940000158073 #23	ENSGT00940000154543.a	ENSGT00530000063859.b #25	ENSGT00940000157562 #26	ENSGT00950000183053.C #27	ENSGT00940000161664 #28	ENSGT00950000182810.A.a.a #29	ENSGT00390000015470 #30	ENSGT00940000159809 #31	ENSGT00940000155569.a.a #32	ENSGT00390000001799 #33	ENSGT01100000264672	ENSGT00940000156300.d #35	ENSGT00390000006634 #36	ENSGT00530000063255.A
American mink	MODERN SPECIES	82	NTSR1 (ENSNVIG00000020055) #8	SLCO4A1 (ENSNVIG00000020066) #9	ENSNVIG00000020092	GATA5 (ENSNVIG00000020102) #10	RBBP8NL (ENSNVIG00000020118) #11	CABLES2 (ENSNVIG00000020141) #12	RPS21 (ENSNVIG00000020157) #13	LAMA5 (ENSNVIG00000020229) #14	ADRM1 (ENSNVIG00000021284) #15	OSBPL2 (ENSNVIG00000021309) #16	HRH3 (ENSNVIG00000021366) #17	MTG2 (ENSNVIG00000021425) #18	SS18L1 (ENSNVIG00000021432) #19	PSMA7 (ENSNVIG00000021436) #20	LSM14B (ENSNVIG00000021449) #21	TAF4 (ENSNVIG00000021480) #22	CDH4 (ENSNVIG00000021602) #23	FAM217B (ENSNVIG00000021647)	SYCP2 (ENSNVIG00000021662) #25	PHACTR3 (ENSNVIG00000021744) #26	EDN3 (ENSNVIG00000021795) #27	ZNF831 (ENSNVIG00000021814) #28	ENSNVIG00000021823 #29	ENSNVIG00000021833 #30	TUBB1 (ENSNVIG00000021841) #31	CTSZ (ENSNVIG00000021856) #32	NELFCD (ENSNVIG00000021864) #33	ENSNVIG00000021887 #35	ENSNVIG00000021954	ENSNVIG00000021981 #36	NPEPL1 (ENSNVIG00000022000)
Ferret	MODERN SPECIES	236	ENSMPUG00000020176	ENSMPUG00000007889	GATA5 (ENSMPUG00000007886) #10	RBBP8NL (ENSMPUG00000007879) #11	CABLES2 (ENSMPUG00000007872) #12	ENSMPUG00000020175	LAMA5 (ENSMPUG00000007845) #14	ADRM1 (ENSMPUG00000007782) #15	OSBPL2 (ENSMPUG00000007774) #16	ENSMPUG00000007771	HRH3 (ENSMPUG00000007765) #17	MTG2 (ENSMPUG00000007761) #18	SS18L1 (ENSMPUG00000007669) #19	PSMA7 (ENSMPUG00000007664) #20	LSM14B (ENSMPUG00000007584) #21	TAF4 (ENSMPUG00000007569) #22	CDH4 (ENSMPUG00000007233) #23	ENSMPUG00000007229	ENSMPUG00000007220	CDH26 (ENSMPUG00000007152) #24	PPP1R3D (ENSMPUG00000020174)	FAM217B (ENSMPUG00000007144)	SYCP2 (ENSMPUG00000007114) #25	PHACTR3 (ENSMPUG00000007105) #26	ZNF831 (ENSMPUG00000007096) #28	ENSMPUG00000007089	ENSMPUG00000007083	PRELID3B (ENSMPUG00000007075) #29	TUBB1 (ENSMPUG00000007062) #31	CTSZ (ENSMPUG00000007010) #32	NELFCD (ENSMPUG00000006914) #33
Felidae	ANCESTRAL SPECIES	3	ENSGT00390000007823 #7	ENSGT01100000263518.A.a.a.a #8	ENSGT01080000257410.C #9	ENSGT00940000160139 #10	ENSGT00530000063835.a #11	ENSGT00400000022086.b.b #12	ENSGT00390000017515.o.b #13	ENSGT00940000156537 #14	ENSGT00390000013839 #15	ENSGT00940000158762 #16	ENSGT00940000161502 #17	ENSGT00940000157379 #18	ENSGT00940000159853 #19	ENSGT00940000159695 #20	ENSGT00940000156010 #21	ENSGT00390000011620.a.a.b #22	ENSGT00940000158073 #23	ENSGT00930000152812	ENSGT00940000161589 #24	ENSGT00940000154543.a	ENSGT00940000161921	ENSGT00530000063859.b #25	ENSGT00940000157562 #26	ENSGT00950000183053.C #27	ENSGT00940000161664 #28	ENSGT00950000182810.A.a.a.g #29	ENSGT00390000015470 #30	ENSGT00940000159809 #31	ENSGT00940000155569.a.a #32	ENSGT00390000001799 #33	ENSGT00940000156300.d #35
Panthera	ANCESTRAL SPECIES	2	ENSGT00390000007823 #7	ENSGT01100000263518.A.a.a.a #8	ENSGT01080000257410.C #9	ENSGT00940000160139 #10	ENSGT00530000063835.a #11	ENSGT00400000022086.b.b #12	ENSGT00390000017515.o.b #13	ENSGT00940000156537 #14	ENSGT00390000013839 #15	ENSGT00940000158762 #16	ENSGT00940000161502 #17	ENSGT00940000157379 #18	ENSGT00940000159853 #19	ENSGT00940000159695 #20	ENSGT00940000156010 #21	ENSGT00390000011620.a.a.b #22	ENSGT00940000158073 #23	ENSGT00930000152812	ENSGT00940000161589 #24	ENSGT00940000154543.a	ENSGT00940000161921	ENSGT00530000063859.b #25	ENSGT00940000157562 #26	ENSGT00950000183053.C #27	ENSGT00940000161664 #28	ENSGT00950000182810.A.a.a.g #29	ENSGT00390000015470 #30	ENSGT00940000159809 #31	ENSGT00940000155569.a.a #32	ENSGT00390000001799 #33	ENSGT00940000156300.d #35
Panthera_a	ANCESTRAL SPECIES	1	ENSGT00390000007823 #7	ENSGT01100000263518.A.a.a.a #8	ENSGT01080000257410.C #9	ENSGT00940000160139 #10	ENSGT00530000063835.a #11	ENSGT00400000022086.b.b #12	ENSGT00390000017515.o.b #13	ENSGT00940000156537 #14	ENSGT00390000013839 #15	ENSGT00940000158762 #16	ENSGT00940000161502 #17	ENSGT00940000157379 #18	ENSGT00940000159853 #19	ENSGT00940000159695 #20	ENSGT00940000156010 #21	ENSGT00390000011620.a.a.b #22	ENSGT00940000158073 #23	ENSGT00930000152812	ENSGT00940000161589 #24	ENSGT00940000154543.a	ENSGT00940000161921	ENSGT00530000063859.b #25	ENSGT00940000157562 #26	ENSGT00950000183053.C #27	ENSGT00940000161664 #28	ENSGT00950000182810.A.a.a.g #29	ENSGT00390000015470 #30	ENSGT00940000159809 #31	ENSGT00940000155569.a.a #32	ENSGT00390000001799 #33	ENSGT00940000156300.d #35
leopard	MODERN SPECIES	105	ENSPPRG00000009399	MRGBP (ENSPPRG00000008348) #7	NTSR1 (ENSPPRG00000007852) #8	SLCO4A1 (ENSPPRG00000007640) #9	GATA5 (ENSPPRG00000006784) #10	RBBP8NL (ENSPPRG00000005756) #11	CABLES2 (ENSPPRG00000005036) #12	RPS21 (ENSPPRG00000004689) #13	ADRM1 (ENSPPRG00000020760) #15	OSBPL2 (ENSPPRG00000018989) #16	HRH3 (ENSPPRG00000013350) #17	MTG2 (ENSPPRG00000010251) #18	SS18L1 (ENSPPRG00000010006) #19	PSMA7 (ENSPPRG00000009414) #20	LSM14B (ENSPPRG00000009197) #21	TAF4 (ENSPPRG00000007879) #22	CDH4 (ENSPPRG00000007638) #23	ENSPPRG00000003048	CDH26 (ENSPPRG00000001923) #24	PPP1R3D (ENSPPRG00000017666)	SYCP2 (ENSPPRG00000000712) #25	PHACTR3 (ENSPPRG00000022438) #26	EDN3 (ENSPPRG00000014380) #27	PRELID3B (ENSPPRG00000012981) #29	ENSPPRG00000011697 #30	TUBB1 (ENSPPRG00000011192) #31	CTSZ (ENSPPRG00000010021) #32	NELFCD (ENSPPRG00000008415) #33	ENSPPRG00000007770 #35	ENSPPRG00000003473	ENSPPRG00000016818 #36
lion	MODERN SPECIES	3	MRGBP (ENSPLOG00000016026) #7	NTSR1 (ENSPLOG00000015983) #8	SLCO4A1 (ENSPLOG00000015950) #9	GATA5 (ENSPLOG00000015886) #10	ENSPLOG00000015816 #11	CABLES2 (ENSPLOG00000015700) #12	RPS21 (ENSPLOG00000015612) #13	ENSPLOG00000015480 #14	ADRM1 (ENSPLOG00000015368) #15	OSBPL2 (ENSPLOG00000015228) #16	HRH3 (ENSPLOG00000015155) #17	MTG2 (ENSPLOG00000015109) #18	SS18L1 (ENSPLOG00000015011) #19	PSMA7 (ENSPLOG00000014943) #20	LSM14B (ENSPLOG00000014849) #21	TAF4 (ENSPLOG00000014564) #22	CDH4 (ENSPLOG00000014187) #23	ENSPLOG00000014142	ENSPLOG00000014104	CDH26 (ENSPLOG00000013915) #24	FAM217B (ENSPLOG00000013894)	PPP1R3D (ENSPLOG00000013873)	SYCP2 (ENSPLOG00000013329) #25	PHACTR3 (ENSPLOG00000013025) #26	EDN3 (ENSPLOG00000012864) #27	ZNF831 (ENSPLOG00000012771) #28	PRELID3B (ENSPLOG00000012723) #29	ATP5F1E (ENSPLOG00000012683) #30	TUBB1 (ENSPLOG00000012649) #31	CTSZ (ENSPLOG00000012619) #32	NELFCD (ENSPLOG00000012546) #33
Tiger	MODERN SPECIES	253	YTHDF1 (ENSPTIG00000017355)	SLC17A9 (ENSPTIG00000018794)	GID8 (ENSPTIG00000019701)	ENSPTIG00000020540	ENSPTIG00000006278	NTSR1 (ENSPTIG00000009080) #8	ENSPTIG00000009938 #11	CABLES2 (ENSPTIG00000011195) #12	ENSPTIG00000012625 ##13	ADRM1 (ENSPTIG00000012974) #15	OSBPL2 (ENSPTIG00000015979) #16	MTG2 (ENSPTIG00000018100) #18	SS18L1 (ENSPTIG00000019059) #19	PSMA7 (ENSPTIG00000020131) #20	LSM14B (ENSPTIG00000021518) #21	ENSPTIG00000003361 #22	CDH4 (ENSPTIG00000006626) #23	ENSPTIG00000012110	CDH26 (ENSPTIG00000012314) #24	SYCP2 (ENSPTIG00000014762) #25	PHACTR3 (ENSPTIG00000021575) #26	PRELID3B (ENSPTIG00000005352) #29	ATP5F1E (ENSPTIG00000006905) #30	ENSPTIG00000007750 #31	ENSPTIG00000011803 #32	NELFCD (ENSPTIG00000012328) #33	GNAS (ENSPTIG00000013655) #35	ENSPTIG00000015863	NPEPL1 (ENSPTIG00000016930)	STX16 (ENSPTIG00000018391)	VAPB (ENSPTIG00000006830)
Cat	MODERN SPECIES	2	ENSFCAG00000043168	MRGBP (ENSFCAG00000028818) #7	NTSR1 (ENSFCAG00000000383) #8	SLCO4A1 (ENSFCAG00000000381) #9	GATA5 (ENSFCAG00000001058) #10	RBBP8NL (ENSFCAG00000001057) #11	CABLES2 (ENSFCAG00000001056) #12	RPS21 (ENSFCAG00000033393) #13	LAMA5 (ENSFCAG00000018350) #14	OSBPL2 (ENSFCAG00000003247) #16	HRH3 (ENSFCAG00000026486) #17	MTG2 (ENSFCAG00000003250) #18	SS18L1 (ENSFCAG00000018839) #19	PSMA7 (ENSFCAG00000003249) #20	LSM14B (ENSFCAG00000003248) #21	TAF4 (ENSFCAG00000011994) #22	CDH4 (ENSFCAG00000011987) #23	TETY1 (ENSFCAG00000036141)	CDH26 (ENSFCAG00000005129) #24	FAM217B (ENSFCAG00000005128)	PPP1R3D (ENSFCAG00000031527)	SYCP2 (ENSFCAG00000005127) #25	PHACTR3 (ENSFCAG00000005126) #26	EDN3 (ENSFCAG00000046428) #27	ZNF831 (ENSFCAG00000000850) #28	NELFCD (ENSFCAG00000000844) #33	PRELID3B (ENSFCAG00000031431) #29	TUBB1 (ENSFCAG00000014627) #31	CTSZ (ENSFCAG00000000845) #32	ENSFCAG00000034898 #35	ENSFCAG00000037901
Laurasiatheria_c	ANCESTRAL SPECIES	17	ENSGT01100000263518.A.a.a.a #8	ENSGT00390000014718	ENSGT01080000257410.C #9	ENSGT00940000160139 #10	ENSGT00530000063835.a #11	ENSGT00400000022086.b.b #12	ENSGT00390000017515.o.b #13	ENSGT00940000156537 #14	ENSGT00390000013839 #15	ENSGT00940000158762 #16	ENSGT00940000161502 #17	ENSGT00940000157379 #18	ENSGT00940000159853 #19	ENSGT00940000159695 #20	ENSGT00940000156010 #21	ENSGT00390000011620.a.a.b #22	ENSGT00940000158073 #23	ENSGT00940000161589 #24	ENSGT00940000154543.a	ENSGT00940000161921	ENSGT00530000063859.b #25	ENSGT00940000157562 #26	ENSGT00950000183053.C #27	ENSGT00940000161664 #28	ENSGT00950000182810.A.a.a #29	ENSGT00390000015470 #30	ENSGT00940000159809 #31	ENSGT00940000155569.a.a #32	ENSGT00390000001799 #33	ENSGT00940000156300.d #35	ENSGT01090000260114
Chiroptera	ANCESTRAL SPECIES	7	ENSGT01100000263518.A.a.a.a #8	ENSGT01080000257410.C #9	ENSGT00390000014718	ENSGT00940000160139 #10	ENSGT00530000063835.a #11	ENSGT00400000022086.b.b #12	ENSGT00390000017515.o.b #13	ENSGT00940000156537 #14	ENSGT00390000013839 #15	ENSGT00940000158762 #16	ENSGT00940000161502 #17	ENSGT00940000157379 #18	ENSGT00940000159853 #19	ENSGT00940000159695 #20	ENSGT00940000156010 #21	ENSGT00390000011620.a.a.b #22	ENSGT00940000158073 #23	ENSGT00940000161589 #24	ENSGT00940000154543.a	ENSGT00940000161921	ENSGT00530000063859.b #25	ENSGT00940000157562 #26	ENSGT00950000183053.C #27	ENSGT00940000161664 #28	ENSGT00950000182810.A.a.a.e #29	ENSGT00390000015470 #30	ENSGT00940000159809 #31	ENSGT00940000155569.a.a #32	ENSGT00390000001799 #33	ENSGT00940000156300.d #35	ENSGT00390000006634 #36
Microchiroptera	ANCESTRAL SPECIES	6	ENSGT01100000263518.A.a.a.a #8	ENSGT01080000257410.C #9	ENSGT00390000014718	ENSGT00940000160139 #10	ENSGT00530000063835.a #11	ENSGT00400000022086.b.b #12	ENSGT00390000017515.o.b #13	ENSGT00940000156537 #14	ENSGT00390000013839 #15	ENSGT00940000158762 #16	ENSGT00940000161502 #17	ENSGT00940000157379 #18	ENSGT00940000159853 #19	ENSGT00940000159695 #20	ENSGT00940000156010 #21	ENSGT00390000011620.a.a.b #22	ENSGT00940000158073 #23	ENSGT00940000161589 #24	ENSGT00940000154543.a	ENSGT00940000161921	ENSGT00530000063859.b #25	ENSGT00940000157562 #26	ENSGT00950000183053.C #27	ENSGT00940000161664 #28	ENSGT00950000182810.A.a.a.e #29	ENSGT00390000015470 #30	ENSGT00940000159809 #31	ENSGT00940000155569.a.a #32	ENSGT00390000001799 #33	ENSGT00940000156300.d #35	ENSGT00390000006634 #36
Greater horseshoe bat	MODERN SPECIES	15	MRGBP (ENSRFEG00010017510) #7	NTSR1 (ENSRFEG00010017545) #8	SLCO4A1 (ENSRFEG00010017567) #9	ENSRFEG00010017737	GATA5 (ENSRFEG00010017774) #10	RBBP8NL (ENSRFEG00010017852) #11	CABLES2 (ENSRFEG00010017891) #12	RPS21 (ENSRFEG00010018046) #13	ADRM1 (ENSRFEG00010019448) #15	OSBPL2 (ENSRFEG00010019536) #16	HRH3 (ENSRFEG00010019606) #17	MTG2 (ENSRFEG00010019620) #18	SS18L1 (ENSRFEG00010019636) #19	PSMA7 (ENSRFEG00010019679) #20	LSM14B (ENSRFEG00010019740) #21	TAF4 (ENSRFEG00010019851) #22	CDH4 (ENSRFEG00010020057) #23	CDH26 (ENSRFEG00010020152) #24	FAM217B (ENSRFEG00010020258)	PPP1R3D (ENSRFEG00010020266)	SYCP2 (ENSRFEG00010020278) #25	PHACTR3 (ENSRFEG00010020491) #26	EDN3 (ENSRFEG00010020608) #27	ZNF831 (ENSRFEG00010020646) #28	ENSRFEG00010020690 #29	ATP5F1E (ENSRFEG00010020727) #30	TUBB1 (ENSRFEG00010020749) #31	CTSZ (ENSRFEG00010020760) #32	NELFCD (ENSRFEG00010020786) #33	ENSRFEG00010020869 #35	ENSRFEG00010021007
Microbat	MODERN SPECIES	1489			SLCO4A1 (ENSMLUG00000012879) #9	GATA5 (ENSMLUG00000000363) #10	RBBP8NL (ENSMLUG00000000353) #11	CABLES2 (ENSMLUG00000000350) #12	RPS21 (ENSMLUG00000000346) #13	LAMA5 (ENSMLUG00000000325) #14	ADRM1 (ENSMLUG00000000322) #15	OSBPL2 (ENSMLUG00000000316) #16	HRH3 (ENSMLUG00000000314) #17	MTG2 (ENSMLUG00000000311) #18	SS18L1 (ENSMLUG00000015710) #19	PSMA7 (ENSMLUG00000000308) #20	LSM14B (ENSMLUG00000000304) #21	TAF4 (ENSMLUG00000010291) #22
Megabat	MODERN SPECIES	2566												MTG2 (ENSPVAG00000017921) #18	SS18L1 (ENSPVAG00000017920) #19	PSMA7 (ENSPVAG00000017919) #20	LSM14B (ENSPVAG00000017918) #21	TAF4 (ENSPVAG00000017917) #22	CDH4 (ENSPVAG00000017916) #23
Equus	ANCESTRAL SPECIES	8	ENSGT01100000263518.A.a.a.a #8	ENSGT00390000014718	ENSGT01080000257410.C #9	ENSGT00940000160139 #10	ENSGT00530000063835.a #11	ENSGT00400000022086.b.b #12	ENSGT00390000017515.o.b #13	ENSGT00940000156537 #14	ENSGT00390000013839 #15	ENSGT00940000158762 #16	ENSGT00940000161502 #17	ENSGT00940000157379 #18	ENSGT00940000159853 #19	ENSGT00940000159695 #20	ENSGT00940000156010 #21	ENSGT00390000011620.a.a.b #22	ENSGT00940000158073 #23	ENSGT00940000161589 #24	ENSGT00390000018266.r	ENSGT00940000154543.a	ENSGT00940000161921	ENSGT00530000063859.b #25	ENSGT00940000157562 #26	ENSGT00950000183053.C #27	ENSGT00940000161664 #28	ENSGT00950000182810.A.a.a #29	ENSGT00390000015470 #30	ENSGT00940000159809 #31	ENSGT00940000155569.a.a #32	ENSGT00390000001799 #33	ENSGT00940000156300.d #35
Donkey	MODERN SPECIES	6	MRGBP (ENSEASG00005026220) #7	NTSR1 (ENSEASG00005023199) #8	SLCO4A1 (ENSEASG00005023200) #9	GATA5 (ENSEASG00005023204) #10	RBBP8NL (ENSEASG00005023205) #11	CABLES2 (ENSEASG00005023206) #12	ENSEASG00005032761 #13	LAMA5 (ENSEASG00005023208) #14	ADRM1 (ENSEASG00005023210) #15	OSBPL2 (ENSEASG00005023211) #16	HRH3 (ENSEASG00005034836) #17	MTG2 (ENSEASG00005033789) #18	SS18L1 (ENSEASG00005023216) #19	PSMA7 (ENSEASG00005023217) #20	LSM14B (ENSEASG00005023218) #21	TAF4 (ENSEASG00005023219) #22	ENSEASG00005023220 #23	CDH26 (ENSEASG00005023223) #24	ENSEASG00005038533	FAM217B (ENSEASG00005029653)	PPP1R3D (ENSEASG00005034180)	SYCP2 (ENSEASG00005023226) #25	PHACTR3 (ENSEASG00005023227) #26	ENSEASG00005023228 #27	ZNF831 (ENSEASG00005023229) #28	PRELID3B (ENSEASG00005023230) #29	ENSEASG00005023231 #30	TUBB1 (ENSEASG00005025539) #31	CTSZ (ENSEASG00005023235) #32	NELFCD (ENSEASG00005023236) #33	ENSEASG00005035219 #35
Horse	MODERN SPECIES	14	NTSR1 (ENSECAG00000019337) #8	ENSECAG00000030764	SLCO4A1 (ENSECAG00000016658) #9	GATA5 (ENSECAG00000034866) #10	RBBP8NL (ENSECAG00000015475) #11	CABLES2 (ENSECAG00000013898) #12	ENSECAG00000044360 #13	LAMA5 (ENSECAG00000023274) #14	ADRM1 (ENSECAG00000052775) #15	OSBPL2 (ENSECAG00000010200) #16	HRH3 (ENSECAG00000008149) #17	MTG2 (ENSECAG00000020567) #18	SS18L1 (ENSECAG00000018310) #19	PSMA7 (ENSECAG00000014168) #20	LSM14B (ENSECAG00000010659) #21	TAF4 (ENSECAG00000023048) #22	CDH4 (ENSECAG00000023333) #23	CDH26 (ENSECAG00000020738) #24	ENSECAG00000036432	PPP1R3D (ENSECAG00000004743)	FAM217B (ENSECAG00000004770)	SYCP2 (ENSECAG00000016085) #25	PHACTR3 (ENSECAG00000007706) #26	EDN3 (ENSECAG00000006225) #27	ZNF831 (ENSECAG00000004219) #28	PRELID3B (ENSECAG00000000513) #29	ENSECAG00000060119 #30	TUBB1 (ENSECAG00000025099) #31	CTSZ (ENSECAG00000024967) #32	NELFCD (ENSECAG00000016334) #33	GNAS (ENSECAG00000024243) #35
Atlantogenata	ANCESTRAL SPECIES	78	ENSGT00390000007823 #7	ENSGT01100000263518.A.a.a.a #8	ENSGT01080000257410.C #9	ENSGT00940000160139 #10	ENSGT00530000063835.a #11	ENSGT00400000022086.b.b #12	ENSGT00390000017515.p ##13	ENSGT00940000156537.e #14	ENSGT00390000013839 #15	ENSGT00940000158762 #16	ENSGT00940000161502 #17	ENSGT00940000157379 #18	ENSGT00940000159853 #19	ENSGT00940000159695 #20	ENSGT00940000156010 #21	ENSGT00390000011620.a.a.b #22	ENSGT00940000158073 #23
Xenarthra	ANCESTRAL SPECIES																	ENSGT00390000011620.a.a.b #22
Armadillo	MODERN SPECIES	2670																TAF4 (ENSDNOG00000047565) #22
Afrotheria	ANCESTRAL SPECIES	86	ENSGT00390000007823 #7	ENSGT01100000263518.A.a.a.a #8	ENSGT01080000257410.C #9	ENSGT00940000160139 #10	ENSGT00530000063835.a #11	ENSGT00400000022086.b.b #12	ENSGT00390000017515.p ##13	ENSGT00940000156537.e #14	ENSGT00390000013839 #15	ENSGT00940000158762 #16	ENSGT00940000161502 #17	ENSGT00940000157379 #18	ENSGT00940000159853 #19	ENSGT00940000159695 #20	ENSGT00940000156010 #21	ENSGT00390000011620.a.a.b #22	ENSGT00940000158073 #23
Afrotheria_a	ANCESTRAL SPECIES	88	ENSGT00390000007823 #7	ENSGT01100000263518.A.a.a.a #8	ENSGT01080000257410.C #9	ENSGT00940000160139 #10	ENSGT00530000063835.a #11	ENSGT00400000022086.b.b #12	ENSGT00390000017515.p ##13	ENSGT00940000156537.e #14	ENSGT00390000013839 #15	ENSGT00940000158762 #16	ENSGT00940000161502 #17	ENSGT00940000157379 #18	ENSGT00940000159853 #19	ENSGT00940000159695 #20	ENSGT00940000156010 #21	ENSGT00390000011620.a.a.b #22	ENSGT00940000158073 #23
Elephant	MODERN SPECIES	52	MRGBP (ENSLAFG00000018296) #7	NTSR1 (ENSLAFG00000008862) #8	SLCO4A1 (ENSLAFG00000007102) #9	GATA5 (ENSLAFG00000002741) #10	RBBP8NL (ENSLAFG00000029543) #11	CABLES2 (ENSLAFG00000023040) #12	RPS21 (ENSLAFG00000015793) ##13	ENSLAFG00000028993 #14	ADRM1 (ENSLAFG00000003207) #15	OSBPL2 (ENSLAFG00000009506) #16	HRH3 (ENSLAFG00000021662) #17	MTG2 (ENSLAFG00000011420) #18	ENSLAFG00000031634 #19	PSMA7 (ENSLAFG00000030070) #20	LSM14B (ENSLAFG00000007492) #21	TAF4 (ENSLAFG00000001807) #22	CDH4 (ENSLAFG00000008770) #23
Hyrax	MODERN SPECIES	2182																TAF4 (ENSPCAG00000004596) #22
Marsupialia	DUPLICATION
Marsupialia	ANCESTRAL SPECIES	15	ENSGT00390000014718	ENSGT01080000257410.C #9	ENSGT01020000230601	ENSGT00940000160139 #10	ENSGT00530000063835.a #11	ENSGT00400000022086.b.b #12	ENSGT00390000017515.p ##13	ENSGT00940000156537 #14	ENSGT00390000013839 #15	ENSGT00940000158762 #16	ENSGT00940000161502 #17	ENSGT00940000157379 #18	ENSGT00940000159853 #19	ENSGT00940000159695 #20	ENSGT00940000156010 #21	ENSGT00390000011620.a.a.b.a #22	ENSGT00940000158073 #23	ENSGT00940000161589 #24	ENSGT00940000154543.a	ENSGT00940000161921	ENSGT00530000063859.b #25	ENSGT00940000157562 #26	ENSGT00950000183053.C #27	ENSGT00940000171292	ENSGT00950000182810.A.a.a.c #29	ENSGT00390000015470 #30	ENSGT00940000159809 #31	ENSGT00940000155569.a.a #32	ENSGT00390000001799 #33	ENSGT00940000156300 #35	ENSGT00940000164142
Marsupialia_b	ANCESTRAL SPECIES	9	ENSGT00390000014718	ENSGT01080000257410.C #9	ENSGT01020000230601	ENSGT00940000160139 #10	ENSGT00530000063835.a.q #11	ENSGT00400000022086.b.b #12	ENSGT00390000017515.p ##13	ENSGT00940000156537 #14	ENSGT00390000013839 #15	ENSGT00940000158762 #16	ENSGT00940000161502 #17	ENSGT00940000157379 #18	ENSGT00940000159853 #19	ENSGT00940000159695 #20	ENSGT00940000156010 #21	ENSGT00390000011620.a.a.b.a #22	ENSGT00940000158073 #23	ENSGT00940000161589 #24	ENSGT00940000154543.a	ENSGT00940000161921	ENSGT00530000063859.b #25	ENSGT00940000157562 #26	ENSGT00950000183053.C #27	ENSGT00940000171292	ENSGT00950000182810.A.a.a.c #29	ENSGT00390000015470 #30	ENSGT00940000159809 #31	ENSGT00940000155569.a.a #32	ENSGT00390000001799 #33	ENSGT00940000156300 #35	ENSGT00940000164142
Diprotodontia	ANCESTRAL SPECIES	2	ENSGT00390000014718	ENSGT01080000257410.C #9	ENSGT01020000230601	ENSGT00940000160139 #10	ENSGT00530000063835.a.q #11	ENSGT00400000022086.b.b #12	ENSGT00390000017515.p ##13	ENSGT00940000156537 #14	ENSGT00390000013839 #15	ENSGT00940000158762 #16	ENSGT00940000161502 #17	ENSGT00940000157379 #18	ENSGT00940000159853 #19	ENSGT00940000159695 #20	ENSGT00940000156010 #21	ENSGT00390000011620.a.a.b.a #22	ENSGT00940000158073 #23	ENSGT00940000161589 #24	ENSGT00940000154543.a	ENSGT00940000157562.c.a #26	ENSGT00940000157562.d #26	ENSGT00950000183053.C #27	ENSGT00940000171292	ENSGT00950000182810.A.a.a.c #29	ENSGT00390000015470.d #30	ENSGT00940000159809 #31	ENSGT00940000155569.a.a #32	ENSGT00390000001799 #33	ENSGT00940000156300 #35	ENSGT00530000063255.A	ENSGT01000000214440.B
Diprotodontia_a	ANCESTRAL SPECIES	2	ENSGT00390000014718	ENSGT01080000257410.C #9	ENSGT01020000230601	ENSGT00940000160139 #10	ENSGT00530000063835.a.q #11	ENSGT00400000022086.b.b #12	ENSGT00390000017515.p ##13	ENSGT00940000156537 #14	ENSGT00390000013839 #15	ENSGT00940000158762 #16	ENSGT00940000161502 #17	ENSGT00940000157379 #18	ENSGT00940000159853 #19	ENSGT00940000159695 #20	ENSGT00940000156010 #21	ENSGT00390000011620.a.a.b.a #22	ENSGT00990000204247	ENSGT00940000158073 #23	ENSGT00940000161589 #24	ENSGT00940000154543.a	ENSGT00940000157562.c.a #26	ENSGT00940000157562.d #26	ENSGT00950000183053.C #27	ENSGT00940000171292	ENSGT00950000182810.A.a.a.c #29	ENSGT00390000015470.d #30	ENSGT00940000159809 #31	ENSGT00940000155569.a.a #32	ENSGT00390000001799 #33	ENSGT00940000156300 #35	ENSGT00530000063255.A
Common wonbat	MODERN SPECIES	35	SLCO4A1 (ENSVURG00010017751) #9	ENSVURG00010017753	GATA5 (ENSVURG00010017761) #10	ENSVURG00010017765 #11	ENSVURG00010017777 ##13	ENSVURG00010017789 #12	LAMA5 (ENSVURG00010017852) #14	ADRM1 (ENSVURG00010018150) #15	OSBPL2 (ENSVURG00010018163) #16	ENSVURG00010018174	HRH3 (ENSVURG00010018176) #17	MTG2 (ENSVURG00010018180) #18	SS18L1 (ENSVURG00010018186) #19	PSMA7 (ENSVURG00010018194) #20	LSM14B (ENSVURG00010018211) #21	TAF4 (ENSVURG00010018221) #22	ENSVURG00010018232	CDH4 (ENSVURG00010018245) #23	CDH26 (ENSVURG00010018281) #24	ENSVURG00010018295	PHACTR3 (ENSVURG00010018312) #26	ENSVURG00010018328 #27	ENSVURG00010018336	PRELID3B (ENSVURG00010018349) #29	ENSVURG00010018360 #30	TUBB1 (ENSVURG00010018364) #31	CTSZ (ENSVURG00010018367) #32	NELFCD (ENSVURG00010018377) #33	GNAS (ENSVURG00010018387) #35	NPEPL1 (ENSVURG00010018402)	STX16 (ENSVURG00010018432)
koala	MODERN SPECIES	11	NTSR1 (ENSPCIG00000017192) #8	ENSPCIG00000009708	SLCO4A1 (ENSPCIG00000009707) #9	GATA5 (ENSPCIG00000013193) #10	ENSPCIG00000013194 #11	CABLES2 (ENSPCIG00000013195) #12	ENSPCIG00000013196 ##13	LAMA5 (ENSPCIG00000013197) #14	ADRM1 (ENSPCIG00000013388) #15	OSBPL2 (ENSPCIG00000013390) #16	HRH3 (ENSPCIG00000037430) #17	MTG2 (ENSPCIG00000013399) #18	SS18L1 (ENSPCIG00000013402) #19	PSMA7 (ENSPCIG00000013403) #20	LSM14B (ENSPCIG00000013405) #21	ENSPCIG00000013407 #22	ENSPCIG00000029897	CDH4 (ENSPCIG00000013421) #23	ENSPCIG00000005030	ENSPCIG00000004436 #24	ENSPCIG00000004449	ENSPCIG00000004520 #26	ENSPCIG00000034992 #26	ENSPCIG00000035600	ENSPCIG00000030684	PRELID3B (ENSPCIG00000004576) #29	ATP5F1E (ENSPCIG00000004581) #30	TUBB1 (ENSPCIG00000004588) #31	CTSZ (ENSPCIG00000004592) #32	NELFCD (ENSPCIG00000004596) #33	GNAS (ENSPCIG00000004602) #35
Tasmanian devil	MODERN SPECIES	1	DIDO1 (ENSSHAG00000009621)	TCFL5 (ENSSHAG00000009928)	ENSSHAG00000025084	ENSSHAG00000010685	NTSR1 (ENSSHAG00000025949) #8	SLCO4A1 (ENSSHAG00000007017) #9	GATA5 (ENSSHAG00000012125) #10	ENSSHAG00000013047 #11	CABLES2 (ENSSHAG00000029271) #12	ENSSHAG00000028487 ##13	ENSSHAG00000014512 #16	HRH3 (ENSSHAG00000030195) #17	ENSSHAG00000015339 #19	PSMA7 (ENSSHAG00000021848) #20	LSM14B (ENSSHAG00000022375) #21	TAF4 (ENSSHAG00000030211) #22	ENSSHAG00000030481	CDH4 (ENSSHAG00000016271) #23	CDH26 (ENSSHAG00000004232) #24	ENSSHAG00000026572	PPP1R3D (ENSSHAG00000028027)	SYCP2 (ENSSHAG00000005477) #25	PHACTR3 (ENSSHAG00000007450) #26	ENSSHAG00000011144 #27	ENSSHAG00000022108	ENSSHAG00000012601	PRELID3B (ENSSHAG00000031416) #29	TUBB1 (ENSSHAG00000013053) #31	ENSSHAG00000013277 #30	CTSZ (ENSSHAG00000022820) #32	NELFCD (ENSSHAG00000013323) #33
Opossum	MODERN SPECIES		SLCO4A1 (ENSMODG00000016783) #9	ENSMODG00000047181	GATA5 (ENSMODG00000016774) #10	ENSMODG00000023265 #11	CABLES2 (ENSMODG00000023264) #12	ENSMODG00000016769 ##13	LAMA5 (ENSMODG00000016753) #14	ADRM1 (ENSMODG00000016715) #15	OSBPL2 (ENSMODG00000016709) #16	HRH3 (ENSMODG00000016705) #17	MTG2 (ENSMODG00000016699) #18	SS18L1 (ENSMODG00000016697) #19	ENSMODG00000016692 #20	LSM14B (ENSMODG00000016690) #21	ENSMODG00000045678	ENSMODG00000016684 #22	CDH4 (ENSMODG00000016675) #23	ENSMODG00000043435	ENSMODG00000045124	ENSMODG00000041278	ENSMODG00000016629 #24	ENSMODG00000027400 #24	ENSMODG00000044206	FAM217B (ENSMODG00000045143)	PPP1R3D (ENSMODG00000023260)	ENSMODG00000016617 #25	PHACTR3 (ENSMODG00000016615) #26	ENSMODG00000016611 #27	ENSMODG00000047827	ENSMODG00000050414	ENSMODG00000016608 #29
Marsupialia	ANCESTRAL SPECIES																	ENSGT00390000011620.a.a.b.b #22
Marsupialia_b	ANCESTRAL SPECIES																	ENSGT00390000011620.a.a.b.b #22
Diprotodontia	ANCESTRAL SPECIES																	ENSGT00390000011620.a.a.b.b #22
Diprotodontia_a	ANCESTRAL SPECIES																	ENSGT00390000011620.a.a.b.b #22
koala	MODERN SPECIES	254	ENSPCIG00000002180	RXRB (ENSPCIG00000002153)	COL11A2 (ENSPCIG00000031838)	BRD2 (ENSPCIG00000002017)	HLA-DMA (ENSPCIG00000001972)	Phci-DMB (ENSPCIG00000019944)	ENSPCIG00000036230	PSMB9 (ENSPCIG00000022552)	ENSPCIG00000034298	ENSPCIG00000008486	ENSPCIG00000001956	ENSPCIG00000001943	ENSPCIG00000034822	ENSPCIG00000005091	ENSPCIG00000001868	ENSPCIG00000001804 #22	ENSPCIG00000001719	ENSPCIG00000009007	ENSPCIG00000008629	ENSPCIG00000005151	ENSPCIG00000008365	Phci-DBA (ENSPCIG00000018833)	Phci-DAA (ENSPCIG00000018830)	ENSPCIG00000018822	ENSPCIG00000018816	ENSPCIG00000018813	ENSPCIG00000018812	ENSPCIG00000018808	GPSM3 (ENSPCIG00000018807)	PBX2 (ENSPCIG00000033599)	AGER (ENSPCIG00000018805)
Wallaby	MODERN SPECIES	3622																TAF4 (ENSMEUG00000013666) #22
Opossum	MODERN SPECIES	2	ENSMODG00000037538	ENSMODG00000038513	ENSMODG00000003770	ENSMODG00000046751	ENSMODG00000050219	ENSMODG00000040037	ENSMODG00000044469	ENSMODG00000037521	ENSMODG00000048371	ENSMODG00000048854	ENSMODG00000011986	ENSMODG00000011998	ENSMODG00000036995	ENSMODG00000042761	ENSMODG00000011981	ENSMODG00000012015 #22	ENSMODG00000038680	ENSMODG00000012002	ENSMODG00000012024	TBX5 (ENSMODG00000012045)	TBX3 (ENSMODG00000012059)	ENSMODG00000041838	MED13L (ENSMODG00000012109)	PLA2G1B (ENSMODG00000003205)	MSI1 (ENSMODG00000003189)	COX6A1 (ENSMODG00000003168)	TRIAP1 (ENSMODG00000003157)	ENSMODG00000044919	SRSF9 (ENSMODG00000003146)	ENSMODG00000003133	ENSMODG00000045676
Platypus	MODERN SPECIES	19	ENSOANG00000004976	MRGBP (ENSOANG00000050356) #7	NTSR1 (ENSOANG00000004978) #8	SLCO4A1 (ENSOANG00000004979) #9	GATA5 (ENSOANG00000004981) #10	ENSOANG00000038125 #12	ENSOANG00000003361 ##13	LAMA5 (ENSOANG00000003362) #14	ADRM1 (ENSOANG00000003363) #15	OSBPL2 (ENSOANG00000036569) #16	HRH3 (ENSOANG00000037021) #17	MTG2 (ENSOANG00000046024) #18	SS18L1 (ENSOANG00000003368) #19	PSMA7 (ENSOANG00000003369) #20	LSM14B (ENSOANG00000003370) #21	TAF4 (ENSOANG00000003371) #22	CDH4 (ENSOANG00000003373) #23	ENSOANG00000009286	PPP1R3D (ENSOANG00000038878)	ENSOANG00000009282 #25	PHACTR3 (ENSOANG00000009281) #26	ENSOANG00000044353 #27	ENSOANG00000046037 #28	PRELID3B (ENSOANG00000049774) #29	ATP5F1E (ENSOANG00000019899) #30	TUBB1 (ENSOANG00000009278) #31	CTSZ (ENSOANG00000040362) #32	NELFCD (ENSOANG00000009277) #33	GNAS (ENSOANG00000009275) #35	ENSOANG00000009272	NPEPL1 (ENSOANG00000009270)
Sauria	ANCESTRAL SPECIES	16	ENSGT01020000230601	ENSGT01080000257410.C #9	ENSGT00390000014718	ENSGT00940000160139 #10	ENSGT00530000063835.a #11	ENSGT00400000022086.b.b #12	ENSGT00390000017515.p ##13	ENSGT00940000156537 #14	ENSGT00390000013839 #15	ENSGT00940000158762 #16	ENSGT00940000161502 #17	ENSGT00940000157379 #18	ENSGT00940000159853 #19	ENSGT00940000159695 #20	ENSGT00940000156010 #21	ENSGT00390000011620.a.a.b #22	ENSGT00940000158073 #23	ENSGT00940000161589 #24	ENSGT00940000154543.a	ENSGT00940000161921	ENSGT00530000063859.b #25	ENSGT00940000157562 #26	ENSGT00950000183053.C #27	ENSGT00940000161664 #28	ENSGT00390000014827	ENSGT00940000158980	ENSGT00950000182810.A.a.a #29	ENSGT00390000015470 #30	ENSGT00940000159809 #31	ENSGT00940000155569.a.a #32	ENSGT00390000001799 #33
Archelosauria	ANCESTRAL SPECIES		ENSGT01090000262302	ENSGT01080000257410.C #9	ENSGT00390000014718	ENSGT00940000160139 #10	ENSGT00530000063835.a #11	ENSGT00400000022086.b.b #12	ENSGT00390000017515.p ##13	ENSGT00940000156537 #14	ENSGT00390000013839 #15	ENSGT00940000158762 #16	ENSGT00940000161502 #17	ENSGT00940000157379 #18	ENSGT00940000159853 #19	ENSGT00940000159695 #20	ENSGT00940000156010 #21	ENSGT00390000011620.a.a.b #22	ENSGT00940000158073 #23	ENSGT00940000161589 #24	ENSGT00940000154543.a	ENSGT00940000161921	ENSGT00530000063859.b #25	ENSGT00940000157562 #26	ENSGT00950000183053.C #27	ENSGT00940000161664 #28	ENSGT00390000014827	ENSGT00940000158980	ENSGT00950000182810.A.a.a #29	ENSGT00940000167348	ENSGT00940000159809 #31	ENSGT00940000155569.a.a #32	ENSGT00390000001799 #33
Archosauria	ANCESTRAL SPECIES	13	ENSGT01090000262302	ENSGT01080000257410.C #9	ENSGT00390000014718	ENSGT00940000160139 #10	ENSGT00530000063835.a #11	ENSGT00400000022086.b.b #12	ENSGT00390000017515.p ##13	ENSGT00940000156537 #14	ENSGT00390000013839 #15	ENSGT00940000158762 #16	ENSGT00940000161502 #17	ENSGT00940000157379 #18	ENSGT00940000159853 #19	ENSGT00940000159695 #20	ENSGT00940000156010 #21	ENSGT00390000011620.a.a.b #22	ENSGT00940000158073 #23	ENSGT00940000161589 #24	ENSGT00940000154543.a	ENSGT00940000161921	ENSGT00530000063859.b #25	ENSGT00940000157562 #26	ENSGT00950000183053.C #27	ENSGT00940000161664 #28	ENSGT00950000182810.A.a.a #29	ENSGT00940000167348	ENSGT00940000159809 #31	ENSGT00940000155569.a.a #32	ENSGT00390000001799 #33	ENSGT00940000156300 #35	ENSGT00940000164142.tc
Aves	ANCESTRAL SPECIES	16	ENSGT01090000262302	ENSGT01080000257410.C #9	ENSGT00390000014718	ENSGT00940000160139 #10	ENSGT00530000063835.a #11	ENSGT00400000022086.b.b #12	ENSGT00390000017515.p ##13	ENSGT00940000156537 #14	ENSGT00390000013839 #15	ENSGT00940000158762 #16	ENSGT00940000161502 #17	ENSGT00940000157379 #18	ENSGT00940000159853 #19	ENSGT00940000159695 #20	ENSGT00940000156010 #21	ENSGT00390000011620.a.a.b #22	ENSGT00940000158073 #23	ENSGT00940000161589 #24	ENSGT00940000154543.a	ENSGT00940000161921	ENSGT00530000063859.b #25	ENSGT00940000157562 #26	ENSGT00950000183053.C #27	ENSGT00940000161664 #28	ENSGT00950000182810.A.a.a #29	ENSGT00940000167348	ENSGT00940000159809 #31	ENSGT00940000155569.a.a #32	ENSGT00390000001799 #33	ENSGT00940000156300 #35	ENSGT00940000164142.tc
Neognathae	ANCESTRAL SPECIES	16	ENSGT01090000262302	ENSGT01080000257410.C #9	ENSGT00390000014718	ENSGT00940000160139 #10	ENSGT00530000063835.a #11	ENSGT00400000022086.b.b #12	ENSGT00390000017515.p ##13	ENSGT00940000156537 #14	ENSGT00390000013839 #15	ENSGT00940000158762 #16	ENSGT00940000161502 #17	ENSGT00940000157379 #18	ENSGT00940000159853 #19	ENSGT00940000159695 #20	ENSGT00940000156010 #21	ENSGT00390000011620.a.a.b #22	ENSGT00940000158073 #23	ENSGT00940000161589 #24	ENSGT00940000154543.a	ENSGT00940000161921	ENSGT00530000063859.b #25	ENSGT00940000157562 #26	ENSGT00950000183053.C #27	ENSGT00940000161664 #28	ENSGT00950000182810.A.a.a #29	ENSGT00940000167348	ENSGT00940000159809 #31	ENSGT00940000155569.a.a #32	ENSGT00390000001799 #33	ENSGT00940000156300 #35	ENSGT00530000063255.A
Galloanserae	ANCESTRAL SPECIES	15	ENSGT01100000263518.A.a.a.a #8	ENSGT01090000262302	ENSGT01080000257410.C #9	ENSGT00940000160139 #10	ENSGT00530000063835.a #11	ENSGT00400000022086.b.b #12	ENSGT00390000017515.p ##13	ENSGT00940000156537 #14	ENSGT00390000013839 #15	ENSGT00940000158762 #16	ENSGT00940000161502 #17	ENSGT00940000157379 #18	ENSGT00940000159853 #19	ENSGT00940000159695 #20	ENSGT00940000156010 #21	ENSGT00390000011620.a.a.b #22	ENSGT00940000158073 #23	ENSGT00940000161589 #24	ENSGT00940000154543.a	ENSGT00940000161921	ENSGT00530000063859.b #25	ENSGT00940000157562 #26	ENSGT00950000183053.C #27	ENSGT00940000161664 #28	ENSGT00950000182810.A.a.a #29	ENSGT00940000167348	ENSGT00940000159809 #31	ENSGT00940000155569.a.a #32	ENSGT00390000001799 #33	ENSGT00940000156300 #35	ENSGT00530000063255.A
Phasianidae	ANCESTRAL SPECIES	15	ENSGT01100000263518.A.a.a.a #8	ENSGT01090000262302	ENSGT01080000257410.C #9	ENSGT00940000160139 #10	ENSGT00530000063835.a #11	ENSGT00400000022086.b.b #12	ENSGT00390000017515.p ##13	ENSGT00940000156537 #14	ENSGT00390000013839 #15	ENSGT00940000158762 #16	ENSGT00940000161502 #17	ENSGT00940000157379 #18	ENSGT00940000159853 #19	ENSGT00940000159695 #20	ENSGT00940000156010 #21	ENSGT00390000011620.a.a.b #22	ENSGT00940000158073 #23	ENSGT00940000154543.a	ENSGT00940000161921	ENSGT00530000063859.b #25	ENSGT00940000157562 #26	ENSGT00940000155154.b	ENSGT00390000018016	ENSGT01050000244866.A.b	ENSGT01050000244866.A.a.a.a.a.f	ENSGT01050000244866.A.a.a.a.a.e	ENSGT01050000244866.A.a.a.a.b	ENSGT00940000154899	ENSGT00390000008325.b.a	ENSGT00940000157304	ENSGT00550000074884
Phasianidae_b	ANCESTRAL SPECIES	15	ENSGT00390000007823 #7	ENSGT01100000263518.A.a.a.a #8	ENSGT01080000257410.C #9	ENSGT00940000160139 #10	ENSGT00530000063835.a #11	ENSGT00400000022086.b.b #12	ENSGT00390000017515.p ##13	ENSGT00940000156537 #14	ENSGT00390000013839 #15	ENSGT00940000158762 #16	ENSGT00940000161502 #17	ENSGT00940000157379 #18	ENSGT00940000159853 #19	ENSGT00940000159695 #20	ENSGT00940000156010 #21	ENSGT00390000011620.a.a.b #22	ENSGT00940000158073 #23	ENSGT00940000154543.a	ENSGT00940000161921	ENSGT00530000063859.b #25	ENSGT00940000157562 #26	ENSGT00940000155154.b	ENSGT00390000018016	ENSGT01050000244866.A.b	ENSGT01050000244866.A.a.a.a.a.f	ENSGT01050000244866.A.a.a.a.a.e	ENSGT01050000244866.A.a.a.a.b	ENSGT00940000154899	ENSGT00390000008325.b.a	ENSGT00940000157304	ENSGT00550000074884
Chicken	MODERN SPECIES	12	MRGBP (ENSGALG00010022299) #7	NTSR1 (ENSGALG00010021510) #8	SLCO4A1 (ENSGALG00010022597) #9	GATA5 (ENSGALG00010022343) #10	RBBP8NL (ENSGALG00010022609) #11	CABLES2 (ENSGALG00010021350) #12	RPS21 (ENSGALG00010021346) ##13	LAMA5 (ENSGALG00010022979) #14	ADRM1 (ENSGALG00010022954) #15	OSBPL2 (ENSGALG00010022888) #16	HRH3 (ENSGALG00010022833) #17	MTG2 (ENSGALG00010022830) #18	SS18L1 (ENSGALG00010022825) #19	PSMA7 (ENSGALG00010022808) #20	LSM14B (ENSGALG00010022801) #21	TAF4 (ENSGALG00010022795) #22	CDH4 (ENSGALG00010022776) #23	FAM217B (ENSGALG00010024565)	PPP1R3D (ENSGALG00010024564)	ENSGALG00010024559 #25	PHACTR3 (ENSGALG00010024545) #26	ZNFX1 (ENSGALG00010024542)	CCNDBP1 (ENSGALG00010024512)	EPB42 (ENSGALG00010024537)	TGM6 (ENSGALG00010024526)	ENSGALG00010024518	TGM3 (ENSGALG00010024490)	KCNB1 (ENSGALG00010024476)	ENSGALG00010024467	STAU1 (ENSGALG00010024030)	CSE1L (ENSGALG00010024009)
Turkey	MODERN SPECIES	14	ENSMGAG00000004719	ENSMGAG00000004880	ENSMGAG00000004887	ENSMGAG00000005069	ENSMGAG00000004893	ENSMGAG00000017740	ENSMGAG00000005090	ENSMGAG00000005029	ENSMGAG00000004978	ENSMGAG00000005119 #26	FAM217B (ENSMGAG00000018760)	PPP1R3D (ENSMGAG00000005191)	ENSMGAG00000020445 #25	ENSMGAG00000022482 #26	ENSMGAG00000005220 #23	ENSMGAG00000005271 #22	ENSMGAG00000005300 #21	ENSMGAG00000005318 #20	SS18L1 (ENSMGAG00000005356) #19	ENSMGAG00000005442 #17	ENSMGAG00000005418 #18	OSBPL2 (ENSMGAG00000005451) #16	ENSMGAG00000019345 #15	ENSMGAG00000005514 #14	ENSMGAG00000005506 #15	ENSMGAG00000005698 ##13	ENSMGAG00000005708 #12	ENSMGAG00000005727 #11	ENSMGAG00000005744 #10	ENSMGAG00000005776 #9	ENSMGAG00000005841 #8
Japanese quail	MODERN SPECIES	12	ENSCJPG00005003087	ENSCJPG00005003085	SLCO4A1 (ENSCJPG00005003076) #9	GATA5 (ENSCJPG00005003073) #10	RBBP8NL (ENSCJPG00005003069) #11	CABLES2 (ENSCJPG00005003062) #12	RPS21 (ENSCJPG00005003060) ##13	LAMA5 (ENSCJPG00005003027) #14	ADRM1 (ENSCJPG00005003018) #15	OSBPL2 (ENSCJPG00005003003) #16	HRH3 (ENSCJPG00005002991) #17	MTG2 (ENSCJPG00005002986) #18	SS18L1 (ENSCJPG00005002978) #19	PSMA7 (ENSCJPG00005002975) #20	LSM14B (ENSCJPG00005002974) #21	TAF4 (ENSCJPG00005002970) #22	CDH4 (ENSCJPG00005002963) #23	FAM217B (ENSCJPG00005002957)	PPP1R3D (ENSCJPG00005002953)	ENSCJPG00005002942 #25	PHACTR3 (ENSCJPG00005002932) #26	ZNFX1 (ENSCJPG00005002920)	EPB42 (ENSCJPG00005002907)	TGM6 (ENSCJPG00005002474)	ENSCJPG00005002472	TGM3 (ENSCJPG00005002469)	KCNB1 (ENSCJPG00005002468)	ENSCJPG00005002463	STAU1 (ENSCJPG00005002450)	CSE1L (ENSCJPG00005002442)	ARFGEF2 (ENSCJPG00005002426)
Anatidae	ANCESTRAL SPECIES	22	ENSGT00390000007823 #7	ENSGT01100000263518.A.a.a.a #8	ENSGT01080000257410.C #9	ENSGT00940000160139 #10	ENSGT00530000063835.a #11	ENSGT00400000022086.b.b #12	ENSGT00390000017515.p ##13	ENSGT00940000156537 #14	ENSGT00390000013839 #15	ENSGT00940000158762 #16	ENSGT00940000161502 #17	ENSGT00940000157379 #18	ENSGT00940000159853 #19	ENSGT00940000159695 #20	ENSGT00940000156010 #21	ENSGT00390000011620.a.a.b #22	ENSGT00940000158073 #23	ENSGT00940000161589 #24	ENSGT00940000154543.a	ENSGT00940000161921	ENSGT00530000063859.b #25	ENSGT00940000157562 #26	ENSGT00950000183053.C #27	ENSGT00940000161664 #28	ENSGT00950000182810.A.a.a #29	ENSGT00940000167348	ENSGT00940000159809 #31	ENSGT00940000155569.a.a #32	ENSGT00390000001799 #33	ENSGT00940000156300 #35	ENSGT00530000063255.A
Duck	MODERN SPECIES	12	OGFR (ENSAPLG00000028652)	MRGBP (ENSAPLG00000029735) #7	SLCO4A1 (ENSAPLG00000003398) #9	ENSAPLG00000017580	RBBP8NL (ENSAPLG00000015008) #11	CABLES2 (ENSAPLG00000025571) #12	RPS21 (ENSAPLG00000002422) ##13	LAMA5 (ENSAPLG00000010163) #14	ADRM1 (ENSAPLG00000011362) #15	OSBPL2 (ENSAPLG00000011733) #16	HRH3 (ENSAPLG00000012513) #17	MTG2 (ENSAPLG00000012536) #18	ENSAPLG00000020842 #19	PSMA7 (ENSAPLG00000012972) #20	LSM14B (ENSAPLG00000013203) #21	TAF4 (ENSAPLG00000013454) #22	CDH4 (ENSAPLG00000013848) #23	CDH26 (ENSAPLG00000013919) #24	FAM217B (ENSAPLG00000014012)	PPP1R3D (ENSAPLG00000014074)	SYCP2 (ENSAPLG00000014080) #25	PHACTR3 (ENSAPLG00000014492) #26	PRELID3B (ENSAPLG00000014562) #29	ZNF831 (ENSAPLG00000017059) #28	ENSAPLG00000014652	NELFCD (ENSAPLG00000014867) #33	GNAS (ENSAPLG00000015373) #35	NPEPL1 (ENSAPLG00000001462)	STX16 (ENSAPLG00000002465)	APCDD1L (ENSAPLG00000002562)	VAPB (ENSAPLG00000002565)
Neognathae_b	ANCESTRAL SPECIES	17	ENSGT01020000230601	ENSGT01080000257410.C #9	ENSGT00390000014718	ENSGT00940000160139 #10	ENSGT00530000063835.a #11	ENSGT00400000022086.b.b #12	ENSGT00390000017515.p ##13	ENSGT00940000156537 #14	ENSGT00390000013839 #15	ENSGT00940000158762 #16	ENSGT00940000161502 #17	ENSGT00940000157379 #18	ENSGT00940000159853 #19	ENSGT00940000159695 #20	ENSGT00940000156010 #21	ENSGT00390000011620.a.a.b #22	ENSGT00940000158073 #23	ENSGT00940000161589 #24	ENSGT00940000154543.a	ENSGT00940000161921	ENSGT00530000063859.b #25	ENSGT00940000157562 #26	ENSGT00950000183053.C #27	ENSGT00940000161664 #28	ENSGT00950000182810.A.a.a #29	ENSGT00940000167348	ENSGT00940000159809 #31	ENSGT00940000155569.a.a #32	ENSGT00390000001799 #33	ENSGT00940000156300 #35	ENSGT00530000063255.A
Passeriformes	ANCESTRAL SPECIES	19	ENSGT01020000230601	ENSGT01080000257410.C #9	ENSGT00390000014718	ENSGT00940000160139 #10	ENSGT00530000063835.a #11	ENSGT00400000022086.b.b #12	ENSGT00390000017515.p ##13	ENSGT00940000156537 #14	ENSGT00390000013839 #15	ENSGT00940000158762 #16	ENSGT00940000161502 #17	ENSGT00940000157379 #18	ENSGT00940000159853 #19	ENSGT00940000159695 #20	ENSGT00940000156010 #21	ENSGT00390000011620.a.a.b #22	ENSGT00940000158073 #23	ENSGT00940000161589 #24	ENSGT00940000154543.a	ENSGT00940000161921	ENSGT00530000063859.b #25	ENSGT00940000157562 #26	ENSGT00950000183053.C #27	ENSGT00940000161664 #28	ENSGT00950000182810.A.a.a #29	ENSGT00940000167348	ENSGT00940000159809 #31	ENSGT00940000155569.a.a #32	ENSGT00390000001799 #33	ENSGT00940000156300 #35	ENSGT00530000063255.A
Great tit	MODERN SPECIES	12	MRGBP (ENSPMJG00000007370) #7	NTSR1 (ENSPMJG00000007373) #8	SLCO4A1 (ENSPMJG00000007375) #9	ENSPMJG00000007384	GATA5 (ENSPMJG00000007390) #10	RBBP8NL (ENSPMJG00000007392) #11	CABLES2 (ENSPMJG00000007397) #12	LAMA5 (ENSPMJG00000007407) #14	ADRM1 (ENSPMJG00000007633) #15	OSBPL2 (ENSPMJG00000007636) #16	HRH3 (ENSPMJG00000007640) #17	MTG2 (ENSPMJG00000007641) #18	SS18L1 (ENSPMJG00000007653) #19	PSMA7 (ENSPMJG00000007654) #20	LSM14B (ENSPMJG00000007655) #21	TAF4 (ENSPMJG00000007656) #22	CDH4 (ENSPMJG00000007666) #23	CDH26 (ENSPMJG00000008768) #24	FAM217B (ENSPMJG00000008769)	PPP1R3D (ENSPMJG00000008770)	PHACTR3 (ENSPMJG00000008771) #26	EDN3 (ENSPMJG00000008777) #27	ZNF831 (ENSPMJG00000008779) #28	PRELID3B (ENSPMJG00000008780) #29	ENSPMJG00000008781	TUBB1 (ENSPMJG00000008782) #31	CTSZ (ENSPMJG00000008783) #32	NELFCD (ENSPMJG00000008784) #33	GNAS (ENSPMJG00000008787) #35	NPEPL1 (ENSPMJG00000009015)	STX16 (ENSPMJG00000009016)
Passeriformes_d	ANCESTRAL SPECIES	19	ENSGT01020000230601	ENSGT01080000257410.C #9	ENSGT00390000014718	ENSGT00940000160139 #10	ENSGT00530000063835.a #11	ENSGT00400000022086.b.b #12	ENSGT00390000017515.p ##13	ENSGT00940000156537 #14	ENSGT00390000013839 #15	ENSGT00940000158762 #16	ENSGT00940000161502 #17	ENSGT00940000157379 #18	ENSGT00940000159853 #19	ENSGT00940000159695 #20	ENSGT00940000156010 #21	ENSGT00390000011620.a.a.b #22	ENSGT00940000158073 #23	ENSGT00940000161589 #24	ENSGT00940000154543.a	ENSGT00940000161921	ENSGT00530000063859.b #25	ENSGT00940000157562 #26	ENSGT00950000183053.C #27	ENSGT00680000101501	ENSGT00940000161664 #28	ENSGT00950000182810.A.a.a #29	ENSGT00940000167348	ENSGT00940000159809 #31	ENSGT00940000155569.a.a #32	ENSGT00390000001799 #33	ENSGT00940000156300 #35
Flycatcher	MODERN SPECIES	12	SLCO4A1 (ENSFALG00000025971) #9	ENSFALG00000025679	GATA5 (ENSFALG00000010551) #10	RBBP8NL (ENSFALG00000024573) #11	CABLES2 (ENSFALG00000028862) #12	ENSFALG00000010558 ##13	LAMA5 (ENSFALG00000010560) #14	ADRM1 (ENSFALG00000010566) #15	OSBPL2 (ENSFALG00000010580) #16	HRH3 (ENSFALG00000024557) #17	MTG2 (ENSFALG00000010600) #18	SS18L1 (ENSFALG00000010601) #19	PSMA7 (ENSFALG00000010605) #20	ENSFALG00000010618 #21	ENSFALG00000023683 #21	TAF4 (ENSFALG00000010629) #22	CDH4 (ENSFALG00000010639) #23	CDH26 (ENSFALG00000010655) #24	FAM217B (ENSFALG00000010660)	SYCP2 (ENSFALG00000010664) #25	PHACTR3 (ENSFALG00000010668) #26	ENSFALG00000024555	ZNF831 (ENSFALG00000010682) #28	PRELID3B (ENSFALG00000026516) #29	ENSFALG00000025054	TUBB1 (ENSFALG00000026126) #31	CTSZ (ENSFALG00000010718) #32	NELFCD (ENSFALG00000010721) #33	GNAS (ENSFALG00000010725) #35	ENSFALG00000023784	NPEPL1 (ENSFALG00000010727)
Passeriformes_g	ANCESTRAL SPECIES	19	ENSGT01020000230601	ENSGT01080000257410.C #9	ENSGT00390000014718	ENSGT00940000160139 #10	ENSGT00530000063835.a #11	ENSGT00400000022086.b.b #12	ENSGT00390000017515.p ##13	ENSGT00940000156537 #14	ENSGT00390000013839 #15	ENSGT00940000158762 #16	ENSGT00940000161502 #17	ENSGT00940000157379 #18	ENSGT00940000159853 #19	ENSGT00940000159695 #20	ENSGT00940000156010 #21	ENSGT00390000011620.a.a.b #22	ENSGT00940000158073 #23	ENSGT00940000154543.a	ENSGT00940000161921	ENSGT00530000063859.b #25	ENSGT00940000157562 #26	ENSGT00950000183053.C #27	ENSGT00940000161664 #28	ENSGT00950000182810.A.a.a #29	ENSGT00940000167348	ENSGT00940000159809 #31	ENSGT00940000155569.a.a #32	ENSGT00390000001799 #33	ENSGT00940000156300 #35	ENSGT00530000063255.A	ENSGT01000000214440.B
Passeroidea	ANCESTRAL SPECIES	18	ENSGT01100000263518.A.a.a.a #8	ENSGT01080000257410.C #9	ENSGT00390000014718	ENSGT00940000160139 #10	ENSGT00530000063835.a #11	ENSGT00400000022086.b.b #12	ENSGT00390000017515.p ##13	ENSGT00940000156537 #14	ENSGT00390000013839 #15	ENSGT00940000158762 #16	ENSGT00940000161502 #17	ENSGT00940000157379 #18	ENSGT00940000159853 #19	ENSGT00940000159695 #20	ENSGT00940000156010 #21	ENSGT00390000011620.a.a.b #22	ENSGT00940000158073 #23	ENSGT00940000154543.a	ENSGT00940000161921	ENSGT00530000063859.b #25	ENSGT00940000157562 #26	ENSGT00950000183053.C #27	ENSGT00940000161664 #28	ENSGT00950000182810.A.a.a #29	ENSGT00940000167348	ENSGT00940000159809 #31	ENSGT00940000155569.a.a #32	ENSGT00390000001799 #33	ENSGT00940000156300 #35	ENSGT00530000063255.A	ENSGT01000000214440.B
Common canary	MODERN SPECIES	21	SLCO4A1 (ENSSCAG00000014874) #9	ENSSCAG00000014901	GATA5 (ENSSCAG00000014913) #10	RBBP8NL (ENSSCAG00000014918) #11	CABLES2 (ENSSCAG00000014923) #12	RPS21 (ENSSCAG00000014930) ##13	LAMA5 (ENSSCAG00000015010) #14	ADRM1 (ENSSCAG00000015218) #15	OSBPL2 (ENSSCAG00000015222) #16	HRH3 (ENSSCAG00000015240) #17	MTG2 (ENSSCAG00000015244) #18	ENSSCAG00000015247 #19	PSMA7 (ENSSCAG00000015249) #20	ENSSCAG00000015251 #21	ENSSCAG00000015252 #21	TAF4 (ENSSCAG00000015255) #22	ENSSCAG00000015262	CDH4 (ENSSCAG00000015267) #23	FAM217B (ENSSCAG00000015272)	PPP1R3D (ENSSCAG00000015274)	PHACTR3 (ENSSCAG00000015276) #26	ENSSCAG00000015284 #28	PRELID3B (ENSSCAG00000015286) #29	ENSSCAG00000015289	TUBB1 (ENSSCAG00000015290) #31	CTSZ (ENSSCAG00000015294) #32	NELFCD (ENSSCAG00000015298) #33	NPEPL1 (ENSSCAG00000015308)	STX16 (ENSSCAG00000015340)	APCDD1L (ENSSCAG00000015346)	VAPB (ENSSCAG00000015350)
Zebra finch	MODERN SPECIES	13	MRGBP (ENSTGUG00000007684) #7	NTSR1 (ENSTGUG00000029344) #8	SLCO4A1 (ENSTGUG00000007700) #9	ENSTGUG00000024863	GATA5 (ENSTGUG00000007723) #10	RBBP8NL (ENSTGUG00000007735) #11	CABLES2 (ENSTGUG00000007738) #12	RPS21 (ENSTGUG00000007750) ##13	LAMA5 (ENSTGUG00000007752) #14	ADRM1 (ENSTGUG00000007836) #15	OSBPL2 (ENSTGUG00000021939) #16	HRH3 (ENSTGUG00000007816) #17	MTG2 (ENSTGUG00000007823) #18	PSMA7 (ENSTGUG00000007864) #20	LSM14B (ENSTGUG00000007884) #21	TAF4 (ENSTGUG00000007892) #22	CDH4 (ENSTGUG00000007909) #23	ENSTGUG00000028411	PPP1R3D (ENSTGUG00000023326)	SYCP2 (ENSTGUG00000018179) #25	PHACTR3 (ENSTGUG00000007984) #26	ENSTGUG00000008033	EDN3 (ENSTGUG00000028676) #27	PRELID3B (ENSTGUG00000021702) #29	ENSTGUG00000023581	ZNF831 (ENSTGUG00000023988) #28	TUBB1 (ENSTGUG00000008035) #31	CTSZ (ENSTGUG00000008040) #32	NELFCD (ENSTGUG00000008047) #33	GNAS (ENSTGUG00000008082) #35	NPEPL1 (ENSTGUG00000008119)
Medium ground finch	MODERN SPECIES	59		ENSGFOG00000011429	ENSGFOG00000011430	ENSGFOG00000011437	ENSGFOG00000011440	ENSGFOG00000011443	ENSGFOG00000011452	LAMA5 (ENSGFOG00000011491) #14	ADRM1 (ENSGFOG00000011757) #15	OSBPL2 (ENSGFOG00000011797) #16	HRH3 (ENSGFOG00000011809) #17	MTG2 (ENSGFOG00000011824) #18	SS18L1 (ENSGFOG00000011833) #19	PSMA7 (ENSGFOG00000011839) #20	LSM14B (ENSGFOG00000011844) #21	TAF4 (ENSGFOG00000011855) #22	CDH4 (ENSGFOG00000011962) #23	FAM217B (ENSGFOG00000013388)	PPP1R3D (ENSGFOG00000000054)	PHACTR3 (ENSGFOG00000000446) #26	ZNF831 (ENSGFOG00000000798) #28	PRELID3B (ENSGFOG00000000916) #29	ENSGFOG00000000926	TUBB1 (ENSGFOG00000000937) #31	CTSZ (ENSGFOG00000000944) #32	NELFCD (ENSGFOG00000000954) #33	GNAS (ENSGFOG00000001019) #35	NPEPL1 (ENSGFOG00000001173)	STX16 (ENSGFOG00000001190)	APCDD1L (ENSGFOG00000001208)	VAPB (ENSGFOG00000001216)
Neognathae_c	ANCESTRAL SPECIES	20	ENSGT00390000018730.A	ENSGT00390000007823 #7	ENSGT01100000263518.A.a.a.a #8	ENSGT01080000257410.C #9	ENSGT00940000160139 #10	ENSGT00400000022086.b.b #12	ENSGT00390000017515.p ##13	ENSGT00940000156537 #14	ENSGT00390000013839 #15	ENSGT00940000158762 #16	ENSGT00940000161502 #17	ENSGT00940000157379 #18	ENSGT00940000159853 #19	ENSGT00940000159695 #20	ENSGT00940000156010 #21	ENSGT00390000011620.a.a.b #22	ENSGT00940000158073 #23	ENSGT00940000161589 #24	ENSGT00940000154543.a	ENSGT00940000161921	ENSGT00940000157562 #26	ENSGT00950000183053.C #27	ENSGT00940000161664 #28	ENSGT00950000182810.A.a.a #29	ENSGT00940000167348	ENSGT00940000159809 #31	ENSGT00940000155569.a.a #32	ENSGT00390000001799 #33	ENSGT00940000156300 #35	ENSGT00530000063255.A	ENSGT01000000214440.B
Kakapo	MODERN SPECIES	5	OGFR (ENSSHBG00005017855)	MRGBP (ENSSHBG00005017850) #7	NTSR1 (ENSSHBG00005017846) #8	SLCO4A1 (ENSSHBG00005017837) #9	GATA5 (ENSSHBG00005017822) #10	CABLES2 (ENSSHBG00005017818) #12	RPS21 (ENSSHBG00005017812) ##13	LAMA5 (ENSSHBG00005017731) #14	ADRM1 (ENSSHBG00005017710) #15	OSBPL2 (ENSSHBG00005017699) #16	HRH3 (ENSSHBG00005017696) #17	MTG2 (ENSSHBG00005017692) #18	SS18L1 (ENSSHBG00005017686) #19	PSMA7 (ENSSHBG00005017680) #20	LSM14B (ENSSHBG00005017664) #21	TAF4 (ENSSHBG00005017650) #22	ENSSHBG00005017632	CPNE1 (ENSSHBG00005017622)	RBM12 (ENSSHBG00005017618)	NFS1 (ENSSHBG00005017616)	ROMO1 (ENSSHBG00005017611)	ENSSHBG00005017608	RBM39 (ENSSHBG00005017603)	ENSSHBG00005017593	PHF20 (ENSSHBG00005017575)	SLA2 (ENSSHBG00005017565)	NDRG3 (ENSSHBG00005017560)	RALGAPB (ENSSHBG00005017544)	ENSSHBG00005017534	CHD6 (ENSSHBG00005008746)	RBL1 (ENSSHBG00005008287)
Golden eagle	MODERN SPECIES	19	OGFR (ENSACCG00020001936)	MRGBP (ENSACCG00020001964) #7	NTSR1 (ENSACCG00020001989) #8	SLCO4A1 (ENSACCG00020002023) #9	GATA5 (ENSACCG00020002058) #10	CABLES2 (ENSACCG00020002089) #12	RPS21 (ENSACCG00020002111) ##13	LAMA5 (ENSACCG00020002277) #14	ADRM1 (ENSACCG00020002454) #15	OSBPL2 (ENSACCG00020002481) #16	HRH3 (ENSACCG00020002540) #17	MTG2 (ENSACCG00020002568) #18	SS18L1 (ENSACCG00020002584) #19	PSMA7 (ENSACCG00020002600) #20	LSM14B (ENSACCG00020002620) #21	TAF4 (ENSACCG00020002670) #22	CDH4 (ENSACCG00020003105) #23	CDH26 (ENSACCG00020003451) #24	FAM217B (ENSACCG00020003465)	PPP1R3D (ENSACCG00020003480)	PHACTR3 (ENSACCG00020003489) #26	EDN3 (ENSACCG00020003509) #27	ZNF831 (ENSACCG00020003516) #28	PRELID3B (ENSACCG00020003538) #29	ENSACCG00020003552	TUBB1 (ENSACCG00020003570) #31	CTSZ (ENSACCG00020003594) #32	NELFCD (ENSACCG00020003640) #33	GNAS (ENSACCG00020003676) #35	NPEPL1 (ENSACCG00020003702)	STX16 (ENSACCG00020003714)
African ostrich	MODERN SPECIES	150	TCFL5 (ENSSCUG00000002792)	OGFR (ENSSCUG00000002790)	ENSSCUG00000002789	NTSR1 (ENSSCUG00000002787) #8	SLCO4A1 (ENSSCUG00000002786) #9	CABLES2 (ENSSCUG00000002778) #12	RPS21 (ENSSCUG00000002776) ##13	LAMA5 (ENSSCUG00000002770) #14	ADRM1 (ENSSCUG00000002760) #15	OSBPL2 (ENSSCUG00000002759) #16	HRH3 (ENSSCUG00000002751) #17	MTG2 (ENSSCUG00000002746) #18	SS18L1 (ENSSCUG00000002742) #19	PSMA7 (ENSSCUG00000002740) #20	LSM14B (ENSSCUG00000002739) #21	TAF4 (ENSSCUG00000002737) #22	CDH4 (ENSSCUG00000002734) #23	CDH26 (ENSSCUG00000002730) #24	FAM217B (ENSSCUG00000002728)	PPP1R3D (ENSSCUG00000002726)	ENSSCUG00000002722 #25	PHACTR3 (ENSSCUG00000002721) #26	ZNF831 (ENSSCUG00000002717) #28	ENSSCUG00000002716	PRELID3B (ENSSCUG00000002713) #29	TUBB1 (ENSSCUG00000002711) #31	CTSZ (ENSSCUG00000002709) #32	NELFCD (ENSSCUG00000002706) #33	GNAS (ENSSCUG00000002700) #35	ENSSCUG00000002697	NPEPL1 (ENSSCUG00000002668)
Australian saltwater crocodile	MODERN SPECIES	59	ENSCPRG00005005699 #7	NTSR1 (ENSCPRG00005005694) #8	ENSCPRG00005005684	SLCO4A1 (ENSCPRG00005005674) #9	GATA5 (ENSCPRG00005005663) #10	RBBP8NL (ENSCPRG00005005655) #11	CABLES2 (ENSCPRG00005005641) #12	RPS21 (ENSCPRG00005005632) ##13	LAMA5 (ENSCPRG00005005529) #14	ADRM1 (ENSCPRG00005005435) #15	OSBPL2 (ENSCPRG00005005417) #16	HRH3 (ENSCPRG00005005411) #17	SS18L1 (ENSCPRG00005005399) #19	PSMA7 (ENSCPRG00005005389) #20	LSM14B (ENSCPRG00005005381) #21	TAF4 (ENSCPRG00005005323) #22	CDH4 (ENSCPRG00005005277) #23	CDH26 (ENSCPRG00005005229) #24	FAM217B (ENSCPRG00005005224)	PPP1R3D (ENSCPRG00005005223)	ENSCPRG00005005220 #26	ENSCPRG00005005209 #26	EDN3 (ENSCPRG00005005205) #27	ZNF831 (ENSCPRG00005005201) #28	PRELID3B (ENSCPRG00005005194) #29	ENSCPRG00005005193	ENSCPRG00005005191	ENSCPRG00005005185	TUBB1 (ENSCPRG00005005181) #31	CTSZ (ENSCPRG00005005179) #32	NELFCD (ENSCPRG00005005167) #33
Cryptodira	ANCESTRAL SPECIES	26	ENSGT01100000263518.A.a.a.a #8	ENSGT01090000262302	ENSGT01080000257410.C #9	ENSGT00940000160139 #10	ENSGT00530000063835.a #11	ENSGT00400000022086.b.b #12	ENSGT00390000017515.p ##13	ENSGT00940000156537 #14	ENSGT00390000013839 #15	ENSGT00940000158762 #16	ENSGT00940000161502 #17	ENSGT00940000157379 #18	ENSGT00940000159853 #19	ENSGT00940000159695 #20	ENSGT00940000156010 #21	ENSGT00390000011620.a.a.b #22	ENSGT00940000158073 #23	ENSGT00940000161589 #24	ENSGT00940000154543.a	ENSGT00940000161921	ENSGT00530000063859.b #25	ENSGT00940000157562 #26	ENSGT00950000183053.C #27	ENSGT00940000161664 #28	ENSGT00390000014827	ENSGT00940000158980	ENSGT00950000182810.A.a.a #29	ENSGT00940000167348	ENSGT00940000159809 #31	ENSGT00940000155569.a.a #32	ENSGT00390000001799 #33
Testudinoidea	ANCESTRAL SPECIES	25	ENSGT01100000263518.A.a.a.a #8	ENSGT01090000262302	ENSGT01080000257410.C #9	ENSGT00940000160139 #10	ENSGT00530000063835.a #11	ENSGT00400000022086.b.b #12	ENSGT00390000017515.p ##13	ENSGT00940000156537 #14	ENSGT00390000013839 #15	ENSGT00940000158762 #16	ENSGT00940000161502 #17	ENSGT00940000157379 #18	ENSGT00940000159853 #19	ENSGT00940000159695 #20	ENSGT00940000156010 #21	ENSGT00390000011620.a.a.b #22	ENSGT00940000158073 #23	ENSGT00940000161589 #24	ENSGT00940000154543.a	ENSGT00940000161921	ENSGT00530000063859.b #25	ENSGT00940000157562 #26	ENSGT00950000183053.C #27	ENSGT00940000161664 #28	ENSGT00390000014827	ENSGT00940000158980	ENSGT00950000182810.A.a.a #29	ENSGT00940000167348	ENSGT00940000159809 #31	ENSGT00940000155569.a.a #32	ENSGT00390000001799 #33
Emydidae	ANCESTRAL SPECIES	31	ENSGT01100000263518.A.a.a.a #8	ENSGT01090000262302	ENSGT01080000257410.C #9	ENSGT00940000160139 #10	ENSGT00530000063835.a #11	ENSGT00400000022086.b.b #12	ENSGT00390000017515.p ##13	ENSGT00940000156537 #14	ENSGT00390000013839 #15	ENSGT00940000158762 #16	ENSGT00940000161502 #17	ENSGT00940000157379 #18	ENSGT00940000159853 #19	ENSGT00940000159695 #20	ENSGT00940000156010 #21	ENSGT00390000011620.a.a.b #22	ENSGT00940000158073 #23	ENSGT00940000161589 #24	ENSGT00940000154543.a	ENSGT00940000161921	ENSGT00530000063859.b #25	ENSGT00940000157562 #26	ENSGT00950000183053.C #27	ENSGT00940000161664 #28	ENSGT00950000182810.A.a.a #29	ENSGT00940000167348	ENSGT00940000159809 #31	ENSGT00940000155569.a.a #32	ENSGT00390000001799 #33	ENSGT00940000156300 #35	ENSGT00940000164142
Three-toed box turtle	MODERN SPECIES	60	OGFR (ENSTMTG00000001726)	MRGBP (ENSTMTG00000001733) #7	NTSR1 (ENSTMTG00000001739) #8	SLCO4A1 (ENSTMTG00000001763) #9	GATA5 (ENSTMTG00000001881) #10	CABLES2 (ENSTMTG00000001905) #12	RPS21 (ENSTMTG00000001966) ##13	LAMA5 (ENSTMTG00000002020) #14	ADRM1 (ENSTMTG00000002296) #15	OSBPL2 (ENSTMTG00000002303) #16	HRH3 (ENSTMTG00000002329) #17	MTG2 (ENSTMTG00000002360) #18	SS18L1 (ENSTMTG00000002365) #19	PSMA7 (ENSTMTG00000002377) #20	LSM14B (ENSTMTG00000002386) #21	TAF4 (ENSTMTG00000002398) #22	CDH4 (ENSTMTG00000002415) #23	CDH26 (ENSTMTG00000002435) #24	FAM217B (ENSTMTG00000002444)	ENSTMTG00000002448 #26	EDN3 (ENSTMTG00000002451) #27	ZNF831 (ENSTMTG00000002455) #28	ENSTMTG00000002460	ENSTMTG00000002464	PRELID3B (ENSTMTG00000000164) #29	ENSTMTG00000000180	ENSTMTG00000000192 #31	CTSZ (ENSTMTG00000000204) #32	NELFCD (ENSTMTG00000000443) #33	GNAS (ENSTMTG00000000827) #35	ENSTMTG00000000871
painted turtle	MODERN SPECIES	2365	ENSCPBG00000027156	ENSCPBG00000027155	SLCO4A1 (ENSCPBG00000027154) #9	GATA5 (ENSCPBG00000027143) #10	RBBP8NL (ENSCPBG00000027139) #11	CABLES2 (ENSCPBG00000027134) #12	RPS21 (ENSCPBG00000027132) ##13	LAMA5 (ENSCPBG00000027113) #14	ADRM1 (ENSCPBG00000027092) #15	OSBPL2 (ENSCPBG00000027086) #16	HRH3 (ENSCPBG00000027081) #17	MTG2 (ENSCPBG00000027075) #18	SS18L1 (ENSCPBG00000027069) #19	PSMA7 (ENSCPBG00000027066) #20	LSM14B (ENSCPBG00000027065) #21	TAF4 (ENSCPBG00000027063) #22	ENSCPBG00000027060	CDH4 (ENSCPBG00000027058) #23	CDH26 (ENSCPBG00000027050) #24	FAM217B (ENSCPBG00000027049)	PPP1R3D (ENSCPBG00000027047)	ENSCPBG00000027042 #25	PHACTR3 (ENSCPBG00000027032) #26	EDN3 (ENSCPBG00000027021) #27	ZNF831 (ENSCPBG00000027016) #28	ENSCPBG00000027014	ENSCPBG00000027012	PRELID3B (ENSCPBG00000027011) #29	ENSCPBG00000027009	TUBB1 (ENSCPBG00000027008) #31	CTSZ (ENSCPBG00000027007) #32
Testudinidae	ANCESTRAL SPECIES	28	ENSGT00390000018730.A	ENSGT00390000007823 #7	ENSGT01100000263518.A.a.a.a #8	ENSGT01080000257410.C #9	ENSGT00940000160139 #10	ENSGT00400000022086.b.b #12	ENSGT00390000017515.p ##13	ENSGT00940000156537 #14	ENSGT00390000013839 #15	ENSGT00940000158762 #16	ENSGT00940000161502 #17	ENSGT00940000157379 #18	ENSGT00940000159853 #19	ENSGT00940000159695 #20	ENSGT00940000156010 #21	ENSGT00390000011620.a.a.b #22	ENSGT00940000158073 #23	ENSGT00940000161589 #24	ENSGT00940000154543.a	ENSGT00940000161921	ENSGT00530000063859.b #25	ENSGT00940000157562 #26	ENSGT00950000183053.C #27	ENSGT00940000161664 #28	ENSGT00390000014827	ENSGT00940000158980	ENSGT00950000182810.A.a.a #29	ENSGT00940000167348	ENSGT00940000159809 #31	ENSGT00940000155569.a.a #32	ENSGT00390000001799 #33
Goode s thornscrub tortoise	MODERN SPECIES	5	MRGBP (ENSGEVG00005006691) #7	NTSR1 (ENSGEVG00005006730) #8	SLCO4A1 (ENSGEVG00005006781) #9	ENSGEVG00005006884	GATA5 (ENSGEVG00005006923) #10	CABLES2 (ENSGEVG00005006972) #12	RPS21 (ENSGEVG00005007045) ##13	LAMA5 (ENSGEVG00005007203) #14	ADRM1 (ENSGEVG00005007944) #15	OSBPL2 (ENSGEVG00005007990) #16	HRH3 (ENSGEVG00005008097) #17	MTG2 (ENSGEVG00005008248) #18	SS18L1 (ENSGEVG00005008266) #19	PSMA7 (ENSGEVG00005008318) #20	LSM14B (ENSGEVG00005008338) #21	TAF4 (ENSGEVG00005008424) #22	CDH4 (ENSGEVG00005008691) #23	CDH26 (ENSGEVG00005008809) #24	FAM217B (ENSGEVG00005008881)	PPP1R3D (ENSGEVG00005008930)	ENSGEVG00005008964 #25	ENSGEVG00005009057 #26	EDN3 (ENSGEVG00005009100) #27	ZNF831 (ENSGEVG00005009136) #28	ENSGEVG00005009188	ENSGEVG00005009225	PRELID3B (ENSGEVG00005009301) #29	ENSGEVG00005009337	TUBB1 (ENSGEVG00005009359) #31	ENSGEVG00005009389 #31	CTSZ (ENSGEVG00005009483) #32
Abingdon island giant tortoise	MODERN SPECIES	2211	ENSCABG00000004407	MRGBP (ENSCABG00000004395) #7	NTSR1 (ENSCABG00000004391) #8	SLCO4A1 (ENSCABG00000004384) #9	GATA5 (ENSCABG00000004377) #10	CABLES2 (ENSCABG00000004375) #12	RPS21 (ENSCABG00000004374) ##13	ENSCABG00000004369 #14	ADRM1 (ENSCABG00000004366) #15	OSBPL2 (ENSCABG00000004242) #16	HRH3 (ENSCABG00000004142) #17	MTG2 (ENSCABG00000004040) #18	ENSCABG00000004025 #19	PSMA7 (ENSCABG00000004021) #20	LSM14B (ENSCABG00000004016) #21	TAF4 (ENSCABG00000004009) #22	CDH4 (ENSCABG00000003998) #23
Chinese turtle	MODERN SPECIES	1282	MRGBP (ENSPSIG00000004671) #7	NTSR1 (ENSPSIG00000004655) #8	SLCO4A1 (ENSPSIG00000004478) #9	GATA5 (ENSPSIG00000004394) #10	RBBP8NL (ENSPSIG00000004354) #11	CABLES2 (ENSPSIG00000004339) #12	RPS21 (ENSPSIG00000004333) ##13	LAMA5 (ENSPSIG00000003797) #14	ADRM1 (ENSPSIG00000003713) #15	OSBPL2 (ENSPSIG00000003694) #16	HRH3 (ENSPSIG00000003664) #17	MTG2 (ENSPSIG00000003651) #18	SS18L1 (ENSPSIG00000016427) #19	PSMA7 (ENSPSIG00000016150) #20	LSM14B (ENSPSIG00000014762) #21	TAF4 (ENSPSIG00000013059) #22	CDH4 (ENSPSIG00000009585) #23	ENSPSIG00000000044	CDH26 (ENSPSIG00000007630) #24	FAM217B (ENSPSIG00000007355)	PPP1R3D (ENSPSIG00000000043)	SYCP2 (ENSPSIG00000015686) #25	ENSPSIG00000015553 #26
Lepidosauria	ANCESTRAL SPECIES	6	ENSGT01100000263518.A.a.a.a #8	ENSGT01080000257410.C #9	ENSGT01020000230601	ENSGT00940000160139 #10	ENSGT00530000063835.a #11	ENSGT00400000022086.b.b #12	ENSGT00390000017515.p ##13	ENSGT00940000156537 #14	ENSGT00390000013839 #15	ENSGT00940000158762 #16	ENSGT00940000161502 #17	ENSGT00940000157379 #18	ENSGT00940000159853 #19	ENSGT00940000159695 #20	ENSGT00940000156010 #21	ENSGT00390000011620.a.a.b #22	ENSGT00940000158073 #23	ENSGT00940000161589 #24	ENSGT00940000154543.a	ENSGT00940000161921	ENSGT00940000157562 #26	ENSGT00950000183053.C #27	ENSGT00940000161664 #28	ENSGT00390000014827	ENSGT00940000158980	ENSGT00950000182810.A.a.a #29	ENSGT00390000015470 #30	ENSGT00940000159809 #31	ENSGT00940000155569.a.a #32	ENSGT00390000001799 #33	ENSGT00940000156300 #35
Episquamata	ANCESTRAL SPECIES	1	ENSGT01100000263518.A.a.a.a #8	ENSGT01080000257410.C #9	ENSGT01020000230601	ENSGT00940000160139 #10	ENSGT00530000063835.a #11	ENSGT00400000022086.b.b #12	ENSGT00390000017515.p ##13	ENSGT00940000156537 #14	ENSGT00390000013839 #15	ENSGT00940000158762 #16	ENSGT00940000161502 #17	ENSGT00940000157379 #18	ENSGT00940000159853 #19	ENSGT00940000159695 #20	ENSGT00940000156010 #21	ENSGT00390000011620.a.a.b #22	ENSGT00940000158073 #23	ENSGT00940000161589 #24	ENSGT00940000154543.a	ENSGT00940000161921	ENSGT00940000157562 #26	ENSGT00950000183053.C #27	ENSGT00940000161664 #28	ENSGT00390000014827	ENSGT00940000158980	ENSGT00950000182810.A.a.a #29	ENSGT00390000015470 #30	ENSGT00940000159809 #31	ENSGT00940000155569.a.a #32	ENSGT00390000001799 #33	ENSGT00940000156300 #35
Laterata	ANCESTRAL SPECIES	14	ENSGT01100000263518.A.a.a.a #8	ENSGT01020000230601	ENSGT01080000257410.C #9	ENSGT00940000160139 #10	ENSGT00530000063835.a #11	ENSGT00400000022086.b.b #12	ENSGT00390000017515.p ##13	ENSGT00940000156537 #14	ENSGT00390000013839 #15	ENSGT00940000158762 #16	ENSGT00940000161502 #17	ENSGT00940000157379 #18	ENSGT00940000159853 #19	ENSGT00940000159695 #20	ENSGT00940000156010 #21	ENSGT00390000011620.a.a.b #22	ENSGT00940000158073 #23	ENSGT00940000161589 #24	ENSGT00940000154543.a	ENSGT00940000161921	ENSGT00530000063859.b #25	ENSGT00940000157562 #26	ENSGT00950000183053.C #27	ENSGT00390000005534.b.c.a.a	ENSGT00940000161664 #28	ENSGT00950000182810.A.a.a #29	ENSGT00390000015470 #30	ENSGT00940000159809 #31	ENSGT00940000155569.a.a #32	ENSGT00390000001799 #33	ENSGT00940000156300 #35
Argentine black and white tegu	MODERN SPECIES	49	MRGBP (ENSSMRG00000012660) #7	NTSR1 (ENSSMRG00000012659) #8	SLCO4A1 (ENSSMRG00000012647) #9	GATA5 (ENSSMRG00000012640) #10	RBBP8NL (ENSSMRG00000012639) #11	CABLES2 (ENSSMRG00000012638) #12	RPS21 (ENSSMRG00000012637) ##13	LAMA5 (ENSSMRG00000012631) #14	ADRM1 (ENSSMRG00000012629) #15	OSBPL2 (ENSSMRG00000012628) #16	HRH3 (ENSSMRG00000012624) #17	MTG2 (ENSSMRG00000012623) #18	SS18L1 (ENSSMRG00000012622) #19	PSMA7 (ENSSMRG00000012621) #20	LSM14B (ENSSMRG00000012615) #21	TAF4 (ENSSMRG00000012607) #22	CDH4 (ENSSMRG00000012600) #23	CDH26 (ENSSMRG00000012589) #24	FAM217B (ENSSMRG00000012588)	PPP1R3D (ENSSMRG00000012586)	PHACTR3 (ENSSMRG00000012571) #26	EDN3 (ENSSMRG00000012557) #27	ENSSMRG00000012556	ENSSMRG00000012555	ENSSMRG00000012554	ENSSMRG00000012553 #28	ENSSMRG00000012550	PRELID3B (ENSSMRG00000012549) #29	ATP5F1E (ENSSMRG00000012547) #30	TUBB1 (ENSSMRG00000012546) #31	CTSZ (ENSSMRG00000012545) #32
Common wall lizard	MODERN SPECIES	14	SLCO4A1 (ENSPMRG00000004613) #9	GATA5 (ENSPMRG00000004600) #10	RBBP8NL (ENSPMRG00000004595) #11	CABLES2 (ENSPMRG00000004586) #12	ENSPMRG00000004578 ##13	ENSPMRG00000004576	LAMA5 (ENSPMRG00000004278) #14	ADRM1 (ENSPMRG00000004214) #15	OSBPL2 (ENSPMRG00000004161) #16	ENSPMRG00000004148	HRH3 (ENSPMRG00000004103) #17	MTG2 (ENSPMRG00000004089) #18	SS18L1 (ENSPMRG00000004078) #19	PSMA7 (ENSPMRG00000004069) #20	LSM14B (ENSPMRG00000004055) #21	TAF4 (ENSPMRG00000003939) #22	CDH4 (ENSPMRG00000003908) #23	ENSPMRG00000003904	ENSPMRG00000003899	CDH26 (ENSPMRG00000003890) #24	PPP1R3D (ENSPMRG00000003887)	FAM217B (ENSPMRG00000003885)	ENSPMRG00000003880 #25	PHACTR3 (ENSPMRG00000003862) #26	EDN3 (ENSPMRG00000003851) #27	ENSPMRG00000003837	ZNF831 (ENSPMRG00000003836) #28	ENSPMRG00000003833	ENSPMRG00000003831	ENSPMRG00000003830	PRELID3B (ENSPMRG00000003829) #29
Toxicofera	ANCESTRAL SPECIES	1	ENSGT01100000263518.A.a.a.a #8	ENSGT01080000257410.C #9	ENSGT01020000230601	ENSGT00940000160139 #10	ENSGT00530000063835.a #11	ENSGT00400000022086.b.b #12	ENSGT00390000017515.p ##13	ENSGT00940000156537 #14	ENSGT00390000013839 #15	ENSGT00940000158762 #16	ENSGT00940000161502 #17	ENSGT00940000157379 #18	ENSGT00940000159853 #19	ENSGT00940000159695 #20	ENSGT00940000156010 #21	ENSGT00390000011620.a.a.b #22	ENSGT00940000158073 #23	ENSGT00940000161589 #24	ENSGT00940000154543.a	ENSGT00940000161921	ENSGT00940000157562 #26	ENSGT00950000183053.C #27	ENSGT00940000161664 #28	ENSGT00390000014827	ENSGT00940000158980	ENSGT00950000182810.A.a.a #29	ENSGT00390000015470 #30	ENSGT00940000159809 #31	ENSGT00940000155569.a.a #32	ENSGT00390000001799 #33	ENSGT00940000156300 #35
Elapidae	ANCESTRAL SPECIES	1	ENSGT01100000263518.A.a.a.a #8	ENSGT01080000257410.C #9	ENSGT01020000230601	ENSGT00940000160139 #10	ENSGT00530000063835.a #11	ENSGT00400000022086.b.b #12	ENSGT00390000017515.p ##13	ENSGT00940000156537 #14	ENSGT00390000013839 #15	ENSGT00940000158762.b #16	ENSGT00940000161502 #17	ENSGT00940000157379 #18	ENSGT00940000159853 #19	ENSGT00940000159695 #20	ENSGT00940000156010 #21	ENSGT00390000011620.a.a.b #22	ENSGT00940000158073 #23	ENSGT00940000161589.w #24	ENSGT00940000154543.a	ENSGT00940000161921	ENSGT00940000157562.p #26	ENSGT00950000183053.C #27	ENSGT00940000161664 #28	ENSGT00390000014827	ENSGT00940000158980	ENSGT00950000182810.A.a.a #29	ENSGT00390000015470 #30	ENSGT00940000159809 #31	ENSGT00940000155569.a.a.o #32	ENSGT00390000001799 #33	ENSGT00940000156300 #35
Elapidae_a	ANCESTRAL SPECIES	3	ENSGT01100000263518.A.a.a.a #8	ENSGT01080000257410.C #9	ENSGT01020000230601	ENSGT00940000160139 #10	ENSGT00530000063835.a #11	ENSGT00400000022086.b.b #12	ENSGT00390000017515.p ##13	ENSGT00940000156537 #14	ENSGT00390000013839 #15	ENSGT00940000158762.b #16	ENSGT00940000161502 #17	ENSGT00940000157379 #18	ENSGT00940000159853 #19	ENSGT00940000159695 #20	ENSGT00940000156010 #21	ENSGT00390000011620.a.a.b #22	ENSGT00940000158073 #23	ENSGT00940000161589.w #24	ENSGT00940000154543.a	ENSGT00940000161921	ENSGT00940000157562.p #26	ENSGT00950000183053.C #27	ENSGT00940000161664 #28	ENSGT00390000014827	ENSGT00940000158980	ENSGT00950000182810.A.a.a #29	ENSGT00390000015470 #30	ENSGT00940000159809 #31	ENSGT00940000155569.a.a.o #32	ENSGT00390000001799 #33	ENSGT00940000156300 #35
Acanthophiinae	ANCESTRAL SPECIES	2	ENSGT01100000263518.A.a.a.a #8	ENSGT01080000257410.C #9	ENSGT01020000230601	ENSGT00940000160139 #10	ENSGT00530000063835.a #11	ENSGT00400000022086.b.b #12	ENSGT00390000017515.p ##13	ENSGT00940000156537 #14	ENSGT00390000013839 #15	ENSGT00940000158762.b #16	ENSGT00940000161502 #17	ENSGT00940000157379 #18	ENSGT00940000159853 #19	ENSGT00940000159695 #20	ENSGT00940000156010 #21	ENSGT00390000011620.a.a.b #22	ENSGT00940000158073 #23	ENSGT00940000161589.w #24	ENSGT00940000154543.a	ENSGT00940000161921	ENSGT00940000157562.p #26	ENSGT00950000183053.C #27	ENSGT00940000161664 #28	ENSGT00950000182810.A.a.a #29	ENSGT00390000015470 #30	ENSGT00940000159809 #31	ENSGT00940000155569.a.a.o #32	ENSGT00390000001799 #33	ENSGT00940000156300 #35	ENSGT00940000164142	ENSGT00530000063255.A
Eastern brown snake	MODERN SPECIES	8	MRGBP (ENSPTXG00000013211) #7	NTSR1 (ENSPTXG00000013212) #8	SLCO4A1 (ENSPTXG00000013213) #9	GATA5 (ENSPTXG00000013216) #10	RBBP8NL (ENSPTXG00000013217) #11	CABLES2 (ENSPTXG00000000034) #12	RPS21 (ENSPTXG00000000063) ##13	LAMA5 (ENSPTXG00000000396) #14	ADRM1 (ENSPTXG00000001974) #15	OSBPL2 (ENSPTXG00000001975) #16	HRH3 (ENSPTXG00000001977) #17	MTG2 (ENSPTXG00000001990) #18	SS18L1 (ENSPTXG00000001994) #19	PSMA7 (ENSPTXG00000001998) #20	LSM14B (ENSPTXG00000002004) #21	TAF4 (ENSPTXG00000002009) #22	CDH4 (ENSPTXG00000002014) #23	CDH26 (ENSPTXG00000002018) #24	FAM217B (ENSPTXG00000002019)	PPP1R3D (ENSPTXG00000002020)	ENSPTXG00000002022 #26	EDN3 (ENSPTXG00000002026) #27	ENSPTXG00000002035 #28	ENSPTXG00000002036	PRELID3B (ENSPTXG00000002037) #29	ATP5F1E (ENSPTXG00000002039) #30	ENSPTXG00000002041 #31	CTSZ (ENSPTXG00000002042) #32	NELFCD (ENSPTXG00000002043) #33	GNAS (ENSPTXG00000002044) #35	ENSPTXG00000002049
Mainland tiger snake	MODERN SPECIES	10		NTSR1 (ENSNSUG00000014059) #8	SLCO4A1 (ENSNSUG00000014060) #9	ENSNSUG00000014062	GATA5 (ENSNSUG00000014066) #10	CABLES2 (ENSNSUG00000014090) #12	RPS21 (ENSNSUG00000014091) ##13	ENSNSUG00000014092 #14	ADRM1 (ENSNSUG00000014093) #15	OSBPL2 (ENSNSUG00000014095) #16	HRH3 (ENSNSUG00000014096) #17	MTG2 (ENSNSUG00000014143) #18	ENSNSUG00000014144 #19	PSMA7 (ENSNSUG00000014145) #20	LSM14B (ENSNSUG00000014146) #21	TAF4 (ENSNSUG00000014148) #22	CDH4 (ENSNSUG00000014149) #23	CDH26 (ENSNSUG00000014151) #24	FAM217B (ENSNSUG00000014152)	PPP1R3D (ENSNSUG00000014154)	ENSNSUG00000014155 #26	EDN3 (ENSNSUG00000014157) #27	ENSNSUG00000014158 #28	ENSNSUG00000014159	PRELID3B (ENSNSUG00000014160) #29	ENSNSUG00000014161	TUBB1 (ENSNSUG00000014162) #31	ENSNSUG00000014163 #32	ENSNSUG00000014164 #32	NELFCD (ENSNSUG00000014165) #33	GNAS (ENSNSUG00000014166) #35
Indian cobra	MODERN SPECIES	2	SLCO4A1 (ENSNNAG00000000979) #9	ENSNNAG00000001003	ENSNNAG00000001023	ENSNNAG00000001032	GATA5 (ENSNNAG00000001050) #10	RBBP8NL (ENSNNAG00000001075) #11	CABLES2 (ENSNNAG00000001114) #12	LAMA5 (ENSNNAG00000001168) #14	ADRM1 (ENSNNAG00000001451) #15	OSBPL2 (ENSNNAG00000001487) #16	HRH3 (ENSNNAG00000001540) #17	MTG2 (ENSNNAG00000001619) #18	SS18L1 (ENSNNAG00000001633) #19	PSMA7 (ENSNNAG00000001644) #20	LSM14B (ENSNNAG00000001657) #21	TAF4 (ENSNNAG00000001673) #22	CDH4 (ENSNNAG00000001810) #23	ENSNNAG00000002410 #24	ENSNNAG00000002425 #24	FAM217B (ENSNNAG00000002449)	PPP1R3D (ENSNNAG00000002459)	PHACTR3 (ENSNNAG00000002466) #26	ENSNNAG00000002503	EDN3 (ENSNNAG00000002512) #27	ZNF831 (ENSNNAG00000002523) #28	ENSNNAG00000002533	ENSNNAG00000002542	PRELID3B (ENSNNAG00000002552) #29	ENSNNAG00000002561	ENSNNAG00000002567 #31	ENSNNAG00000002569 #31
Lizard	MODERN SPECIES	3	SLCO4A1 (ENSACAG00000005096) #9	GATA5 (ENSACAG00000005064) #10	CABLES2 (ENSACAG00000005032) #12	RPS21 (ENSACAG00000037786) ##13	ENSACAG00000039758	LAMA5 (ENSACAG00000004758) #14	ADRM1 (ENSACAG00000004732) #15	OSBPL2 (ENSACAG00000004657) #16	ENSACAG00000039986 #17	ENSACAG00000004624 #17	ENSACAG00000043437	MTG2 (ENSACAG00000016072) #18	SS18L1 (ENSACAG00000016087) #19	PSMA7 (ENSACAG00000016158) #20	LSM14B (ENSACAG00000016195) #21	TAF4 (ENSACAG00000016214) #22	CDH4 (ENSACAG00000016236) #23	ENSACAG00000035574	ENSACAG00000038730	ENSACAG00000037619	CDH26 (ENSACAG00000003897) #24	FAM217B (ENSACAG00000025908)	PPP1R3D (ENSACAG00000003895)	ENSACAG00000036499	ENSACAG00000003951 #25	ENSACAG00000043340	PHACTR3 (ENSACAG00000003686) #26	ENSACAG00000040825	CEBPB (ENSACAG00000015567)	ENSACAG00000015580	ENSACAG00000025937
tuatara	MODERN SPECIES	1214	OGFR (ENSSPUG00000014989)	MRGBP (ENSSPUG00000014844) #7	NTSR1 (ENSSPUG00000014802) #8	SLCO4A1 (ENSSPUG00000014790) #9	GATA5 (ENSSPUG00000014763) #10	CABLES2 (ENSSPUG00000014749) #12	ENSSPUG00000014739 ##13	LAMA5 (ENSSPUG00000014592) #14	ADRM1 (ENSSPUG00000014518) #15	OSBPL2 (ENSSPUG00000014462) #16	MTG2 (ENSSPUG00000014422) #18	SS18L1 (ENSSPUG00000014410) #19	ENSSPUG00000014401 #19	PSMA7 (ENSSPUG00000014388) #20	LSM14B (ENSSPUG00000014360) #21	TAF4 (ENSSPUG00000014338) #22	CDH4 (ENSSPUG00000014313) #23
Anura	ANCESTRAL SPECIES	31	ENSGT00390000007823 #7	ENSGT01100000263518.A.a.a.a #8	ENSGT01080000257410.C #9	ENSGT00940000160139 #10	ENSGT00530000063835.a #11	ENSGT00400000022086.b.b #12	ENSGT00390000017515 #13	ENSGT00940000156537 #14	ENSGT00390000013839 #15	ENSGT00940000158762 #16	ENSGT00940000161502 #17	ENSGT00940000157379 #18	ENSGT00940000159853 #19	ENSGT00940000159695 #20	ENSGT00940000156010 #21	ENSGT00390000011620.a.a.b #22	ENSGT00940000158073 #23	ENSGT00940000161589 #24	ENSGT00940000154543.a	ENSGT00940000161921	ENSGT00530000063859.b #25	ENSGT00940000157562 #26	ENSGT00950000183053.C #27	ENSGT00940000161664 #28	ENSGT00950000182810.A.a.a #29	ENSGT00960000187407	ENSGT00940000159809 #31	ENSGT00940000155569.a.a #32	ENSGT00390000001799 #33	ENSGT01090000260114	ENSGT00940000156300 #35
Frog	MODERN SPECIES	1	ENSXETG00000011260	slco4a1 (ENSXETG00000011257) #9	gata5 (ENSXETG00000005127) #10	rbbp8nl (ENSXETG00000002015) #11	cables2 (ENSXETG00000002013) #12	rps21 (ENSXETG00000002012) #13	ENSXETG00000002008 #14	ENSXETG00000048930 #14	adrm1 (ENSXETG00000002006) #16	hrh3 (ENSXETG00000049145)	mtg2 (ENSXETG00000002001) #18	ss18l1 (ENSXETG00000039365) #19	psma7 (ENSXETG00000001998) #20	lsm14b (ENSXETG00000001997) #21	ENSXETG00000047018	taf4 (ENSXETG00000001996) #22	ENSXETG00000045999	ENSXETG00000047028	ENSXETG00000044861	cdh4 (ENSXETG00000049321) #23	ENSXETG00000042813	ENSXETG00000005046 #24	fam217b (ENSXETG00000039310)	ppp1r3d (ENSXETG00000037956)	cdh26 (ENSXETG00000026460) #24	sycp2 (ENSXETG00000031145) #25	phactr3 (ENSXETG00000005049) #26	edn3 (ENSXETG00000043917) #27	znf831 (ENSXETG00000040847) #28	ENSXETG00000042701	PRELID3B (ENSXETG00000044004) #29
Leishan spiny toad	MODERN SPECIES	3	MRGBP (ENSLLEG00000029499) #7	NTSR1 (ENSLLEG00000029511) #8	ENSLLEG00000029519	SLCO4A1 (ENSLLEG00000029528) #9	GATA5 (ENSLLEG00000029551) #10	ENSLLEG00000029575 #11	CABLES2 (ENSLLEG00000029586) #12	LAMA5 (ENSLLEG00000029653) #14	ADRM1 (ENSLLEG00000029790) #15	OSBPL2 (ENSLLEG00000029968) #16	HRH3 (ENSLLEG00000030077) #17	MTG2 (ENSLLEG00000030106) #18	SS18L1 (ENSLLEG00000030159) #19	PSMA7 (ENSLLEG00000030206) #20	ENSLLEG00000030338 #21	TAF4 (ENSLLEG00000030383) #22	CDH4 (ENSLLEG00000014748) #23	ENSLLEG00000017422	ENSLLEG00000017493 #24	CDH26 (ENSLLEG00000018521) #24	FAM217B (ENSLLEG00000019972)	PPP1R3D (ENSLLEG00000020009)	PHACTR3 (ENSLLEG00000020053) #26	EDN3 (ENSLLEG00000020159) #27	ENSLLEG00000020215 #28	ENSLLEG00000020282	PRELID3B (ENSLLEG00000020377) #29	SNTA1 (ENSLLEG00000020660)	ENSLLEG00000020769	TOX2 (ENSLLEG00000020800)	RALGAPB (ENSLLEG00000021136)
Coelacanth	MODERN SPECIES	544	SLCO4A1 (ENSLACG00000016459) #9	sh3bgrl (ENSLACG00000016177)	GATA5 (ENSLACG00000014444) #10	ENSLACG00000013497 #11	CABLES2 (ENSLACG00000012872) #12	rps21 (ENSLACG00000012753) #13	LAMA5 (ENSLACG00000009138) #14	ADRM1 (ENSLACG00000008853) #15	OSBPL2 (ENSLACG00000008076) #16	HRH3 (ENSLACG00000006816) #17	ENSLACG00000006466	MTG2 (ENSLACG00000006066) #18	SS18L1 (ENSLACG00000005205) #19	PSMA7 (ENSLACG00000004628) #20	LSM14B (ENSLACG00000003849) #21	TAF4 (ENSLACG00000000501) #22
Actinopterygii	ANCESTRAL SPECIES	115	ENSGT00980000202953	ENSGT00940000156490	ENSGT00940000162011	ENSGT00940000163813	ENSGT00390000005939.a.b	ENSGT00940000165182	ENSGT00940000161589 #24	ENSGT00940000155218.A	ENSGT00940000162118	ENSGT00940000163206.b	ENSGT00740000116961	ENSGT00940000157379 #18	ENSGT00940000159853 #19	ENSGT00940000159695 #20	ENSGT00940000156010 #21	ENSGT00390000011620.a.a.b #22	ENSGT00940000158073 #23
Neopterygii	ANCESTRAL SPECIES	49	ENSGT00390000001787	ENSGT00980000202953	ENSGT00940000156490.b.a	ENSGT00940000163813	ENSGT00390000005939.a.b	ENSGT00940000165182	ENSGT00940000161589 #24	ENSGT00940000155218.A	ENSGT00940000162118	ENSGT00940000163206.b	ENSGT00740000116961	ENSGT00940000157379 #18	ENSGT00940000159853 #19	ENSGT00940000159695 #20	ENSGT00940000156010 #21	ENSGT00390000011620.a.a.b #22	ENSGT00940000158073 #23	ENSGT00940000160902	ENSGT00390000018730.A.e	ENSGT00940000161930	ENSGT00390000002821	ENSGT00940000155532	ENSGT00940000154897	ENSGT00510000046470.a.a.b	ENSGT00950000183021.a.b	ENSGT00940000159151	ENSGT00950000183029.C	ENSGT00390000007823 #7	ENSGT00940000161109	ENSGT00940000156478	ENSGT00940000164502
Osteoglossocephalai	ANCESTRAL SPECIES	28		ENSGT00940000156245.b	ENSGT00390000001787	ENSGT00980000202953	ENSGT00940000156490.b.a	ENSGT00940000163813	ENSGT00390000005939.a.b.a	ENSGT00940000165182	ENSGT00940000161589 #24	ENSGT00940000155218.A.d	ENSGT00740000116961	ENSGT00940000157379 #18	ENSGT00940000159853 #19	ENSGT00940000159695 #20	ENSGT00940000156010.db #21	ENSGT00390000011620.a.a.b #22	ENSGT00940000156010.eb #21	ENSGT00940000158073 #23	ENSGT00940000160902.c.a	ENSGT00390000018730.A.f	ENSGT00940000160902.c.b	ENSGT00390000018730.A.e	ENSGT00940000161930	ENSGT00390000002821	ENSGT00940000155532	ENSGT00940000154897	ENSGT00510000046470.a.a.b	ENSGT00950000183021.a.b	ENSGT00940000156478	ENSGT00940000161109	ENSGT00390000007823 #7
Clupeocephala	DUPLICATION
Clupeocephala	ANCESTRAL SPECIES	95	ENSGT00940000166464	ENSGT00390000013132.b.a	ENSGT00390000003721.d.a.g.a	ENSGT00940000156310.p	ENSGT01050000244841.A.b.b.b.a	ENSGT00390000018596.A.a.a	ENSGT01000000215056	ENSGT00940000158931	ENSGT00940000154857.yb.b	ENSGT00940000158489.a.b	ENSGT00950000183091.B.b	ENSGT00940000156490.b.b	ENSGT00390000005939.a.b.b	ENSGT00940000165182.d	ENSGT00940000155218.A.c	ENSGT00390000011620.a.a.b.e #22	ENSGT00940000156010.eb #21	ENSGT00940000158073.b #23	ENSGT00940000160902.c.a	ENSGT00390000018730.A.f
Euteleosteomorpha	ANCESTRAL SPECIES	5	ENSGT00950000182835.c.d.c.a	ENSGT00940000154089.a.c	ENSGT00940000154791	ENSGT00940000166464	ENSGT00940000165427	ENSGT00390000018596.A.a.a	ENSGT01000000215056	ENSGT00940000158931	ENSGT00940000154857.yb.b	ENSGT00940000158489.a.b	ENSGT00950000183091.B.b	ENSGT00940000156490.b.b	ENSGT00390000005939.a.b.b	ENSGT00940000165182.d	ENSGT00940000156010.eb #21	ENSGT00390000011620.a.a.b.e #22	ENSGT00940000158073.b #23	ENSGT00940000177296	ENSGT00940000160902.c.a	ENSGT00390000018730.A.f	ENSGT00940000155532	ENSGT00940000154897.r	ENSGT00950000183021.a.b.d	ENSGT00940000161109	ENSGT00940000166926	ENSGT00940000164502.a.b	ENSGT00940000156477.d.a	ENSGT00950000182872.f.a.a.a.b	ENSGT00940000160331	ENSGT00390000018330	ENSGT00940000163461.b
Protacanthopterygii	ANCESTRAL SPECIES	24		ENSGT00390000013132.b.a	ENSGT00390000003721.d.a.g.a	ENSGT00940000156310.p	ENSGT01050000244841.A.b.b.b.a	ENSGT00390000018596.A.a.a	ENSGT01000000215056	ENSGT00940000158931	ENSGT00940000154857.yb.b	ENSGT00940000158489.a.b	ENSGT00950000183091.B.b.c	ENSGT00940000156490.b.b	ENSGT00390000005939.a.b.b	ENSGT00940000165182.d	ENSGT00940000156010.eb #21	ENSGT00390000011620.a.a.b.e #22	ENSGT00940000158073.b #23	ENSGT00940000177296	ENSGT00940000160902.c.a	ENSGT00390000018730.A.f	ENSGT00940000155532	ENSGT00940000154897.q	ENSGT00510000046470.a.a.b	ENSGT00950000183021.a.b.c	ENSGT00940000154897.r	ENSGT00950000183021.a.b.d	ENSGT00940000161109	ENSGT00940000166926	ENSGT00940000164502.a.b	ENSGT00940000156477.d.a	ENSGT00950000182872.f.a.a.a.b
Salmoninae	ANCESTRAL SPECIES	103				ENSGT00390000003721.d.a.g.a.a	ENSGT00940000156310.p.d	ENSGT01050000244841.A.b.b.b.a.e	ENSGT00390000018596.A.a.a.h	ENSGT01000000215056.a	ENSGT00940000158931.k	ENSGT00940000154857.yb.b	ENSGT00940000158489.a.b.a	ENSGT00950000183091.B.b.c	ENSGT00940000156490.b.b.c	ENSGT00390000005939.a.b.b.d	ENSGT00940000165182.d.c	ENSGT00390000011620.a.a.b.e #22	ENSGT00940000158073.b.g #23	ENSGT00940000177296	ENSGT00940000160902.c.a.b	ENSGT00390000018730.A.f.p.a	ENSGT00940000155532.vd.a	ENSGT00940000154897.r.d	ENSGT00950000183021.a.b.d.d	ENSGT00940000161109.n.b	ENSGT00940000166926.d	ENSGT00940000164502.a.b.d	ENSGT00940000156477.d.a.j	ENSGT00950000182872.f.a.a.a.b.a.b	ENSGT00940000160331.f.b	ENSGT00390000018330.f.b	ENSGT00940000154681.b.d.c
Salmoninae_a	ANCESTRAL SPECIES	29	ENSGT00940000154791	ENSGT00940000166464.d	ENSGT00390000013132.b.a.d	ENSGT00390000003721.d.a.g.a.a	ENSGT00940000156310.p.d	ENSGT01050000244841.A.b.b.b.a.e	ENSGT00390000018596.A.a.a.h	ENSGT01000000215056.a	ENSGT00940000158931.k	ENSGT00940000154857.yb.b	ENSGT00940000158489.a.b.a	ENSGT00950000183091.B.b.c	ENSGT00940000156490.b.b.c	ENSGT00390000005939.a.b.b.d	ENSGT00940000165182.d.c	ENSGT00390000011620.a.a.b.e #22	ENSGT00940000158073.b.g #23	ENSGT00940000177296	ENSGT00940000160902.c.a.b	ENSGT00390000018730.A.f.p.a	ENSGT00940000155532.vd.a.b.a	ENSGT00940000155532.vd.a.b.b	ENSGT00940000154897.r.d	ENSGT00950000183021.a.b.d.d	ENSGT00940000161109.n.b	ENSGT00940000166926.d	ENSGT00940000164502.a.b.d	ENSGT00940000156477.d.a.j	ENSGT00950000182872.f.a.a.a.b.a.b	ENSGT00940000160331.f.b	ENSGT00390000018330.f.b
Salmo	ANCESTRAL SPECIES	33	ENSGT00940000154089.a.c.h	ENSGT00940000154791	ENSGT00940000166464.d	ENSGT00390000013132.b.a.d	ENSGT00390000003721.d.a.g.a.a	ENSGT00940000156310.p.d	ENSGT01050000244841.A.b.b.b.a.e	ENSGT00390000018596.A.a.a.h	ENSGT01000000215056.a	ENSGT00940000158931.k	ENSGT00940000154857.yb.b	ENSGT00940000158489.a.b.a	ENSGT00940000156490.b.b.c	ENSGT00390000005939.a.b.b.d	ENSGT00940000165182.d.c	ENSGT00390000011620.a.a.b.e #22	ENSGT00940000158073.b.g #23	ENSGT00940000160902.c.a.b	ENSGT00390000018730.A.f.p.a	ENSGT00390000018730.A.f.p.b	ENSGT00940000155532.vd.a.a	ENSGT00940000155532.vd.a.b.b	ENSGT00940000154897.r.d	ENSGT00950000183021.a.b.d.d	ENSGT00940000161109.n.b	ENSGT00940000166926.d	ENSGT00940000164502.a.b.d	ENSGT00940000156477.d.a.j	ENSGT00950000182872.f.a.a.a.b.a.b	ENSGT00940000160331.f.b	ENSGT00390000018330.f.b
Atlantic salmon	MODERN SPECIES	3	ENSSSAG00000079996	pfkfb4a (ENSSSAG00000080031)	mapkapk3 (ENSSSAG00000120343)	ENSSSAG00000080363	ENSSSAG00000104861	s61a1 (ENSSSAG00000080810)	ENSSSAG00000084614	ENSSSAG00000109190	ENSSSAG00000088324	ENSSSAG00000080884	ENSSSAG00000080939	ENSSSAG00000081039	ENSSSAG00000102513	ENSSSAG00000081051	ENSSSAG00000087159	ENSSSAG00000081057 #22	ENSSSAG00000081100 #23	ENSSSAG00000081295	ENSSSAG00000081297	ENSSSAG00000111766	ENSSSAG00000081301	ENSSSAG00000004266	ENSSSAG00000004953	id1 (ENSSSAG00000004998)	sulf2a (ENSSSAG00000005047)	arhgap46a (ENSSSAG00000005505)	ENSSSAG00000005509	ndrg3a (ENSSSAG00000005546)	ENSSSAG00000005663	trpc4apa (ENSSSAG00000005687)	ENSSSAG00000088124
River trout	MODERN SPECIES	5	DNAH1 (ENSSTUG00000034096)	ENSSTUG00000033807	chchd4a (ENSSTUG00000030053)	SEC61A1 (ENSSTUG00000029598)	ip6k2a (ENSSTUG00000029574)	ENSSTUG00000029572	CIDEC (ENSSTUG00000029528)	ENSSTUG00000029517	uqcrc1 (ENSSTUG00000025251)	ENSSTUG00000025107	TTLL3 (ENSSTUG00000025056)	ENSSTUG00000025039	bmp7a (ENSSTUG00000025030)	ENSSTUG00000025018	ENSSTUG00000025009	TAF4 (ENSSTUG00000024908) #22	cdh4 (ENSSTUG00000024471) #23	ENSSTUG00000024454	KCNK15 (ENSSTUG00000024440)	ENSSTUG00000024412	ENSSTUG00000024400	ENSSTUG00000024377	ENSSTUG00000024392	ZMYND8 (ENSSTUG00000019792)	NCOA3 (ENSSTUG00000019605)	id1 (ENSSTUG00000019588)	sulf2a (ENSSTUG00000018981)	arhgap46a (ENSSTUG00000018936)	ENSSTUG00000018894	ndrg3a (ENSSTUG00000018686)	ENSSTUG00000018631
Oncorhynchus	ANCESTRAL SPECIES	1	ENSGT00940000154791	ENSGT00940000166464.d	ENSGT00390000013132.b.a.d	ENSGT00390000003721.d.a.g.a.a	ENSGT00940000156310.p.d	ENSGT01050000244841.A.b.b.b.a.e	ENSGT00390000018596.A.a.a.h	ENSGT01000000215056.a	ENSGT00940000158931.k	ENSGT00940000154857.yb.b	ENSGT00940000158489.a.b.a	ENSGT00950000183091.B.b.c	ENSGT00940000156490.b.b.c	ENSGT00390000005939.a.b.b.d	ENSGT00940000165182.d.c	ENSGT00390000011620.a.a.b.e #22	ENSGT00940000158073.b.g #23	ENSGT00940000177296	ENSGT00940000160902.c.a.b	ENSGT00390000018730.A.f.p.a	ENSGT00940000155532.vd.a.b.a	ENSGT00940000155532.vd.a.b.b	ENSGT00940000154897.r.d	ENSGT00950000183021.a.b.d.d	ENSGT00940000161109.n.b	ENSGT00940000166926.d	ENSGT00940000164502.a.b.d	ENSGT00940000156477.d.a.j	ENSGT00950000182872.f.a.a.a.b.a.b	ENSGT00940000160331.f.b	ENSGT00390000018330.f.b
Rainbow trout	MODERN SPECIES	8	chchd4a (ENSOMYG00000043928)	ENSOMYG00000043931	ENSOMYG00000043959	ENSOMYG00000044147	ENSOMYG00000044148	ENSOMYG00000044153	ENSOMYG00000044159	ENSOMYG00000044179	ENSOMYG00000044488	RBM38 (ENSOMYG00000044496)	RAE1 (ENSOMYG00000044503)	BMP7 (ENSOMYG00000044505)	ENSOMYG00000063650	ENSOMYG00000076707	ENSOMYG00000044516	ENSOMYG00000044533 #22	ENSOMYG00000044618 #23	ENSOMYG00000065846	ENSOMYG00000044770	ENSOMYG00000044783	ENSOMYG00000061045	ENSOMYG00000044786	ENSOMYG00000007315	ENSOMYG00000008594	ID1C (ENSOMYG00000008617)	sulf2a (ENSOMYG00000008664)	arhgap46a (ENSOMYG00000008693)	ENSOMYG00000008739	ndrg3a (ENSOMYG00000010054)	trpc4apa (ENSOMYG00000015342)	snai1a (ENSOMYG00000016028)
Oncorhynchus_a	ANCESTRAL SPECIES	3	ENSGT00940000154791	ENSGT00940000166464.d	ENSGT00390000013132.b.a.d	ENSGT00390000003721.d.a.g.a.a	ENSGT00940000156310.p.d	ENSGT01050000244841.A.b.b.b.a.e	ENSGT00390000018596.A.a.a.h	ENSGT01000000215056.a	ENSGT00940000158931.k	ENSGT00940000154857.yb.b	ENSGT00940000158489.a.b.a	ENSGT00950000183091.B.b.c	ENSGT00940000156490.b.b.c	ENSGT00390000005939.a.b.b.d	ENSGT00940000165182.d.c	ENSGT00390000011620.a.a.b.e #22	ENSGT00940000158073.b.g #23	ENSGT00940000160902.c.a.b	ENSGT00390000018730.A.f.p.a	ENSGT00940000155532.vd.a.b.a	ENSGT00940000154897.r.d	ENSGT00950000183021.a.b.d.d	ENSGT00940000161109.n.b	ENSGT00940000166926.d	ENSGT00940000164502.a.b.d	ENSGT00940000156477.d.a.j	ENSGT00950000182872.f.a.a.a.b.a.b	ENSGT00940000160331.f.b	ENSGT00390000018330.f.b	ENSGT00940000154681.b.d.c	ENSGT00980000199461.b
Coho salmon	MODERN SPECIES		chchd4a (ENSOKIG00005017799)	SEC61A1 (ENSOKIG00005017474)	ENSOKIG00005017453	IP6K2 (ENSOKIG00005017446)	ENSOKIG00005017443	ENSOKIG00005017439	ENSOKIG00005017419	ENSOKIG00005017414	uqcrc1 (ENSOKIG00005013809)	TTLL3 (ENSOKIG00005013519)	RBM38 (ENSOKIG00005013496)	RAE1 (ENSOKIG00005013425)	BMP7 (ENSOKIG00005013410)	ENSOKIG00005013398	ENSOKIG00005013390	TAF4 (ENSOKIG00005013008) #22	CDH4 (ENSOKIG00005012598) #23	KCNK15 (ENSOKIG00005012526)	ENSOKIG00005012510	ENSOKIG00005012459	ZMYND8 (ENSOKIG00005004939)	NCOA3 (ENSOKIG00005004526)	id1 (ENSOKIG00005004490)	sulf2a (ENSOKIG00005004206)	arhgap46a (ENSOKIG00005004149)	ENSOKIG00005004131	ndrg3a (ENSOKIG00005016490)	ENSOKIG00005016457	trpc4apa (ENSOKIG00005016395)	snai1a (ENSOKIG00005016381)	ENSOKIG00005016366
Chinook salmon	MODERN SPECIES	11	ENSOTSG00005017252	chchd4a (ENSOTSG00005017254)	SEC61A1 (ENSOTSG00005017265)	IP6K2 (ENSOTSG00005018228)	ENSOTSG00005018230	cidec (ENSOTSG00005018232)	ENSOTSG00005018233	uqcrc1 (ENSOTSG00005018265)	TTLL3 (ENSOTSG00005024119)	RBM38 (ENSOTSG00005024120)	rae1 (ENSOTSG00005024121)	bmp7a (ENSOTSG00005024122)	ENSOTSG00005024123	ENSOTSG00005024124	ENSOTSG00005024125	TAF4 (ENSOTSG00005024127) #22	cdh4 (ENSOTSG00005024227) #23	ENSOTSG00005029555	ENSOTSG00005029557	ZMYND8 (ENSOTSG00005029575)	NCOA3 (ENSOTSG00005042192)	id1 (ENSOTSG00005042195)	sulf2a (ENSOTSG00005042198)	arhgap46a (ENSOTSG00005042201)	ENSOTSG00005042203	ndrg3a (ENSOTSG00005042210)	ENSOTSG00005042216	trpc4apa (ENSOTSG00005042217)	snai1a (ENSOTSG00005042218)	ENSOTSG00005042220	GGT7 (ENSOTSG00005042221)
Huchen	MODERN SPECIES	625				SEC61A1 (ENSHHUG00000043092)	ip6k2a (ENSHHUG00000043206)	ENSHHUG00000043209	ENSHHUG00000043210	ENSHHUG00000043212	ENSHHUG00000043213	uqcrc1 (ENSHHUG00000043221)	TTLL3 (ENSHHUG00000043288)	ENSHHUG00000043300	bmp7a (ENSHHUG00000043309)	ENSHHUG00000043332	LSM14B (ENSHHUG00000043335) #21	TAF4 (ENSHHUG00000043348) #22	ENSHHUG00000043443	cdh4 (ENSHHUG00000043456) #23
Northern pike	MODERN SPECIES	16	ENSELUG00000006181	chchd4a (ENSELUG00000006166)	SEC61A1 (ENSELUG00000006142)	ip6k2a (ENSELUG00000006086)	ENSELUG00000025158	ENSELUG00000006029	cidec (ENSELUG00000006000)	ENSELUG00000005948	uqcrc1 (ENSELUG00000005895)	RBM38 (ENSELUG00000005849)	rae1 (ENSELUG00000005833)	bmp7a (ENSELUG00000005817)	ENSELUG00000005806	ENSELUG00000005799	LSM14B (ENSELUG00000005780) #21	TAF4 (ENSELUG00000005741) #22	cdh4 (ENSELUG00000005693) #23	KCNK15 (ENSELUG00000000159)	ENSELUG00000031326	ENSELUG00000005607	ENSELUG00000033279	ZMYND8 (ENSELUG00000005483)	ENSELUG00000005397	id1 (ENSELUG00000005365)	sulf2a (ENSELUG00000005287)	arhgap46a (ENSELUG00000005147)	ENSELUG00000005071	ndrg3a (ENSELUG00000004982)	SLA2 (ENSELUG00000004947)	trpc4apa (ENSELUG00000004927)	myh7ba (ENSELUG00000004892)
Acanthomorphata	ANCESTRAL SPECIES	42									ENSGT00940000158489.a.b	ENSGT00950000183091.B.b	ENSGT00940000156490.b.b	ENSGT00390000005939.a.b.b	ENSGT00940000165182.d	ENSGT00940000155218.A.c	ENSGT00940000156010.eb #21	ENSGT00390000011620.a.a.b.e #22	ENSGT00940000158073.b #23	ENSGT00940000177296	ENSGT00940000160902.c.a	ENSGT00390000018730.A.f	ENSGT00940000154897.r	ENSGT00950000183021.a.b.d	ENSGT00940000161109	ENSGT00940000166926	ENSGT00940000164502.a.b	ENSGT00940000156477.d.a	ENSGT00950000182872.f.a.a.a.b	ENSGT00940000160331	ENSGT00390000018330	ENSGT00940000163461.b	ENSGT00940000160318.c.b
Euacanthomorphacea	ANCESTRAL SPECIES	1	ENSGT00940000166464	ENSGT00940000174829	ENSGT00940000154791	ENSGT00940000154089.a.c	ENSGT00950000182835.c.d.c.a	ENSGT00390000016233.e.a	ENSGT00390000008947	ENSGT00940000156245.b	ENSGT00940000158489.a.b	ENSGT00950000183091.B.b	ENSGT00940000156490.b.b	ENSGT00390000005939.a.b.b	ENSGT00940000165182.d	ENSGT00940000155218.A.c	ENSGT00940000156010.eb #21	ENSGT00390000011620.a.a.b.e #22	ENSGT00940000158073.b #23	ENSGT00940000177296	ENSGT00940000160902.c.a	ENSGT00390000018730.A.f	ENSGT00940000154897.r	ENSGT00950000183021.a.b.d	ENSGT00940000161109	ENSGT00940000166926	ENSGT00940000164502.a.b	ENSGT00940000156477.d.a	ENSGT00950000182872.f.a.a.a.b	ENSGT00940000160331	ENSGT00390000018330	ENSGT00940000163461.b	ENSGT00940000160318.c.b
Percomorphaceae	ANCESTRAL SPECIES	1	ENSGT00390000013132.b.a	ENSGT00940000166464	ENSGT00940000174829	ENSGT00940000154791	ENSGT00940000154089.a.c	ENSGT00950000182835.c.d.c.a	ENSGT00390000016233.e.a	ENSGT00390000008947	ENSGT00940000158489.a.b	ENSGT00950000183091.B.b	ENSGT00940000156490.b.b	ENSGT00390000005939.a.b.b	ENSGT00940000165182.d	ENSGT00940000155218.A.c	ENSGT00940000156010.eb #21	ENSGT00390000011620.a.a.b.e #22	ENSGT00940000158073.b #23	ENSGT00940000177296	ENSGT00940000160902.c.a	ENSGT00390000018730.A.f	ENSGT00940000154897.r	ENSGT00950000183021.a.b.d	ENSGT00940000161109	ENSGT00940000166926	ENSGT00940000164502.a.b	ENSGT00940000156477.d.a	ENSGT00950000182872.f.a.a.a.b	ENSGT00940000160331	ENSGT00390000018330	ENSGT00940000163461.b	ENSGT00940000160318.c.b
Tiger tail seahorse	MODERN SPECIES	510						ENSHCOG00000005676	ZMYND8 (ENSHCOG00000005670)	ARPC4 (ENSHCOG00000005642)	tada3l (ENSHCOG00000005625)	RBM38 (ENSHCOG00000005622)	rae1 (ENSHCOG00000005616)	BMP7 (ENSHCOG00000005555)	ENSHCOG00000004876	LSM14B (ENSHCOG00000004867) #21	ENSHCOG00000004862 #21	ENSHCOG00000004847 #22	cdh4 (ENSHCOG00000004825) #23	ENSHCOG00000004773	slc25a26 (ENSHCOG00000004718)	ENSHCOG00000004706	LRIG1 (ENSHCOG00000004691)	kbtbd8 (ENSHCOG00000004650)	ENSHCOG00000004623	suclg2 (ENSHCOG00000004615)	ENSHCOG00000004607	tafa4b (ENSHCOG00000004598)	EOGT (ENSHCOG00000004579)	tmf1 (ENSHCOG00000004533)	ENSHCOG00000000829	PRKCD (ENSHCOG00000004336)
Percomorphaceae_B	ANCESTRAL SPECIES	3	ENSGT00390000013132.b.a	ENSGT00940000166464	ENSGT00940000174829	ENSGT00940000154791	ENSGT00940000154089.a.c	ENSGT00950000182835.c.d.c.a	ENSGT00390000016233.e.a	ENSGT00390000008947	ENSGT00940000158489.a.b	ENSGT00950000183091.B.b	ENSGT00940000156490.b.b	ENSGT00390000005939.a.b.b	ENSGT00940000165182.d	ENSGT00940000155218.A.c	ENSGT00940000156010.eb #21	ENSGT00390000011620.a.a.b.e #22	ENSGT00940000158073.b #23	ENSGT00940000177296	ENSGT00940000160902.c.a	ENSGT00390000018730.A.f	ENSGT00940000154897.r	ENSGT00950000183021.a.b.d	ENSGT00940000161109	ENSGT00940000166926	ENSGT00940000164502.a.b	ENSGT00940000156477.d.a	ENSGT00950000182872.f.a.a.a.b	ENSGT00940000160331	ENSGT00390000018330	ENSGT00940000160318.c.b	ENSGT00940000154681.b.d
Ovalentaria	ANCESTRAL SPECIES	2	ENSGT00390000013132.b.a	ENSGT00940000166464	ENSGT00940000174829	ENSGT00940000154791	ENSGT00940000154089.a.c	ENSGT00950000182835.c.d.c.a	ENSGT00390000016233.e.a	ENSGT00390000008947	ENSGT00940000158489.a.b	ENSGT00950000183091.B.b	ENSGT00940000156490.b.b	ENSGT00390000005939.a.b.b	ENSGT00940000165182.d	ENSGT00940000155218.A.c	ENSGT00940000156010.eb #21	ENSGT00390000011620.a.a.b.e #22	ENSGT00940000158073.b #23	ENSGT00940000177296	ENSGT00940000160902.c.a	ENSGT00390000018730.A.f	ENSGT00940000154897.r	ENSGT00950000183021.a.b.d	ENSGT00940000161109	ENSGT00940000166926	ENSGT00940000164502.a.b	ENSGT00940000156477.d.a	ENSGT00950000182872.f.a.a.a.b	ENSGT00940000160331	ENSGT00390000018330	ENSGT00940000160318.c.b	ENSGT00940000154681.b.d
Ovalentaria_B	ANCESTRAL SPECIES	5	ENSGT00390000003721.d.a.g.a	ENSGT00390000013132.b.a	ENSGT00940000166464	ENSGT00940000174829	ENSGT00940000154791	ENSGT00940000154089.a.c	ENSGT00950000182835.c.d.c.a	ENSGT00390000016233.e.a	ENSGT00390000008947	ENSGT00940000158489.a.b	ENSGT00950000183091.B.b	ENSGT00940000156490.b.b	ENSGT00940000165182.d	ENSGT00940000155218.A.c	ENSGT00940000156010.eb #21	ENSGT00390000011620.a.a.b.e #22	ENSGT00940000158073.b #23	ENSGT00940000177296	ENSGT00940000160902.c.a	ENSGT00390000018730.A.f	ENSGT00940000154897.r	ENSGT00950000183021.a.b.d	ENSGT00940000161109	ENSGT00940000166926	ENSGT00940000164502.a.b	ENSGT00940000156477.d.a	ENSGT00950000182872.f.a.a.a.b	ENSGT00940000160331	ENSGT00390000018330	ENSGT00940000160318.c.b	ENSGT00940000154681.b.d
Pomacentridae	ANCESTRAL SPECIES	33	ENSGT00940000164411	ENSGT00940000160486.d	ENSGT00940000158405	ENSGT00950000182893.a.a.b.b	ENSGT00940000155006.e.a	ENSGT00940000154089.a.c	ENSGT00950000182835.c.d.c.a	ENSGT00390000016233.e.a	ENSGT00390000008947	ENSGT00940000158489.a.b	ENSGT00950000183091.B.b	ENSGT00940000156490.b.b	ENSGT00940000165182.d	ENSGT00940000155218.A.c	ENSGT00940000156010.eb #21	ENSGT00390000011620.a.a.b.e #22	ENSGT00940000158073.b #23	ENSGT00940000177296	ENSGT00940000160902.c.a	ENSGT00390000018730.A.f	ENSGT00940000154897.r	ENSGT00950000183021.a.b.d	ENSGT00940000161109	ENSGT00940000166926	ENSGT00940000164502.a.b	ENSGT00940000156477.d.a	ENSGT00950000182872.f.a.a.a.b	ENSGT00940000160331	ENSGT00390000018330	ENSGT00940000160318.c.b	ENSGT00940000154681.b.d
Pomacentridae_A	ANCESTRAL SPECIES	2	ENSGT00940000164411	ENSGT00940000160486.d	ENSGT00940000158405	ENSGT00950000182893.a.a.b.b	ENSGT00940000155006.e.a	ENSGT00940000154089.a.c	ENSGT00950000182835.c.d.c.a	ENSGT00390000016233.e.a	ENSGT00390000008947	ENSGT00940000158489.a.b	ENSGT00950000183091.B.b	ENSGT00940000156490.b.b	ENSGT00940000165182.d	ENSGT00940000155218.A.c	ENSGT00940000156010.eb #21	ENSGT00390000011620.a.a.b.e #22	ENSGT00940000158073.b #23	ENSGT00940000177296	ENSGT00940000160902.c.a	ENSGT00390000018730.A.f	ENSGT00940000154897.r	ENSGT00950000183021.a.b.d	ENSGT00940000161109	ENSGT00940000166926	ENSGT00940000164502.a.b	ENSGT00940000156477.d.a	ENSGT00950000182872.f.a.a.a.b	ENSGT00940000160331	ENSGT00390000018330	ENSGT00940000160318.c.b	ENSGT00940000154681.b.d
Amphiprion	ANCESTRAL SPECIES	38	ENSGT00940000164411	ENSGT00940000160486.d	ENSGT00940000158405	ENSGT00950000182893.a.a.b.b	ENSGT00940000155006.e.a	ENSGT00940000154089.a.c	ENSGT00950000182835.c.d.c.a	ENSGT00390000016233.e.a	ENSGT00390000008947	ENSGT00940000158489.a.b	ENSGT00950000183091.B.b	ENSGT00940000156490.b.b	ENSGT00940000165182.d	ENSGT00940000155218.A.c	ENSGT00940000156010.eb #21	ENSGT00390000011620.a.a.b.e #22	ENSGT00940000158073.b #23	ENSGT00940000160902.c.a	ENSGT00390000018730.A.f	ENSGT00940000154897.r	ENSGT00950000183021.a.b.d	ENSGT00940000161109	ENSGT00940000166926	ENSGT00940000164502.a.b	ENSGT00940000156477.d.a	ENSGT00950000182872.f.a.a.a.b	ENSGT00940000160331	ENSGT00390000018330	ENSGT00940000160318.c.b	ENSGT00940000154681.b.d	ENSGT00940000156917.b
Orange clownfish	MODERN SPECIES	20	ENSAPEG00000023397	MAFB (ENSAPEG00000023407)	fam83d (ENSAPEG00000023418)	ENSAPEG00000023431	top1a (ENSAPEG00000023452)	MAPKAPK3 (ENSAPEG00000023504)	pfkfb4a (ENSAPEG00000023519)	arpc4 (ENSAPEG00000023544)	tada3l (ENSAPEG00000023555)	RBM38 (ENSAPEG00000023581)	rae1 (ENSAPEG00000023589)	bmp7a (ENSAPEG00000023610)	ENSAPEG00000023619	ENSAPEG00000023624	LSM14B (ENSAPEG00000023633) #21	ENSAPEG00000023671 #22	cdh4 (ENSAPEG00000023708) #23	ENSAPEG00000023796	ogfr2 (ENSAPEG00000023804)	ENSAPEG00000023815	ZMYND8 (ENSAPEG00000023865)	NCOA3 (ENSAPEG00000024040)	id1 (ENSAPEG00000024079)	sulf2a (ENSAPEG00000024100)	arhgap46a (ENSAPEG00000024124)	PHF20 (ENSAPEG00000024148)	ndrg3a (ENSAPEG00000024175)	ENSAPEG00000024204	trpc4apa (ENSAPEG00000024210)	myh7ba (ENSAPEG00000024252)	snai1a (ENSAPEG00000024286)
Clown anemonefish	MODERN SPECIES	1068										RBM38 (ENSAOCG00000012559)	rae1 (ENSAOCG00000012519)	bmp7a (ENSAOCG00000012469)	ENSAOCG00000012441	ENSAOCG00000012394	LSM14B (ENSAOCG00000012380) #21	ENSAOCG00000012362 #22
Spiny chromis	MODERN SPECIES	2429												bmp7a (ENSAPOG00000001722)	ENSAPOG00000001734	ENSAPOG00000001769	ENSAPOG00000001780 #21	ENSAPOG00000001831 #22
Bicolor damselfish	MODERN SPECIES	1122	adnpa (ENSSPAG00000021247)	ENSSPAG00000021221	MAFB (ENSSPAG00000021215)	fam83d (ENSSPAG00000021210)	ENSSPAG00000021203	top1a (ENSSPAG00000021140)	ENSSPAG00000021102	PFKFB4 (ENSSPAG00000021065)	ARPC4 (ENSSPAG00000021038)	tada3l (ENSSPAG00000021006)	RBM38 (ENSSPAG00000020989)	rae1 (ENSSPAG00000020972)	bmp7a (ENSSPAG00000020958)	ENSSPAG00000020949	ENSSPAG00000020915 #21	ENSSPAG00000020887 #22
Cichlidae	ANCESTRAL SPECIES	1	ENSGT00390000003721.d.a.g.a	ENSGT00390000013132.b.a	ENSGT00940000166464	ENSGT00940000174829	ENSGT00940000154791	ENSGT00940000154089.a.c	ENSGT00950000182835.c.d.c.a	ENSGT00390000016233.e.a	ENSGT00390000008947	ENSGT00940000158489.a.b	ENSGT00950000183091.B.b	ENSGT00940000156490.b.b	ENSGT00940000165182.d	ENSGT00940000155218.A.c	ENSGT00940000156010.eb #21	ENSGT00390000011620.a.a.b.e #22	ENSGT00940000158073.b #23	ENSGT00940000177296	ENSGT00940000160902.c.a	ENSGT00390000018730.A.f	ENSGT00940000154897.r	ENSGT00950000183021.a.b.d	ENSGT00940000161109	ENSGT00940000166926	ENSGT00940000164502.a.b	ENSGT00940000156477.d.a	ENSGT00950000182872.f.a.a.a.b	ENSGT00940000160331	ENSGT00390000018330	ENSGT00940000160318.c.b	ENSGT00940000154681.b.d
Pseudocrenilabrinae	ANCESTRAL SPECIES	4	ENSGT00390000003721.d.a.g.a	ENSGT00390000013132.b.a	ENSGT00940000166464	ENSGT00940000174829	ENSGT00940000154791	ENSGT00940000154089.a.c	ENSGT00950000182835.c.d.c.a	ENSGT00390000016233.e.a	ENSGT00390000008947	ENSGT00940000158489.a.b	ENSGT00950000183091.B.b	ENSGT00940000156490.b.b	ENSGT00940000165182.d	ENSGT00940000155218.A.c	ENSGT00940000156010.eb #21	ENSGT00390000011620.a.a.b.e #22	ENSGT00940000158073.b #23	ENSGT00940000177296	ENSGT00940000160902.c.a	ENSGT00390000018730.A.f	ENSGT00940000161930	ENSGT00390000002821	ENSGT00940000155532	ENSGT00940000154897.r	ENSGT00950000183021.a.b.d	ENSGT00940000161109	ENSGT00940000166926	ENSGT00940000164502.a.b	ENSGT00940000156477.d.a	ENSGT00950000182872.f.a.a.a.b.f	ENSGT00940000160331
Pseudocrenilabrinae_A	ANCESTRAL SPECIES	2	ENSGT00390000003721.d.a.g.a	ENSGT00390000013132.b.a	ENSGT00940000166464	ENSGT00940000174829	ENSGT00940000154791	ENSGT00940000154089.a.c	ENSGT00950000182835.c.d.c.a	ENSGT00390000016233.e.a	ENSGT00390000008947	ENSGT00940000158489.a.b	ENSGT00950000183091.B.b	ENSGT00940000156490.b.b	ENSGT00940000165182.d	ENSGT00940000155218.A.c	ENSGT00940000156010.eb #21	ENSGT00390000011620.a.a.b.e #22	ENSGT00940000158073.b #23	ENSGT00940000177296	ENSGT00940000160902.c.a	ENSGT00390000018730.A.f	ENSGT00940000155532	ENSGT00940000154897.r	ENSGT00950000183021.a.b.d	ENSGT00940000161109	ENSGT00940000166926	ENSGT00940000164502.a.b	ENSGT00940000156477.d.a	ENSGT00950000182872.f.a.a.a.b.f	ENSGT00940000160331	ENSGT00390000018330	ENSGT00940000160318.c.b
Haplochromini	ANCESTRAL SPECIES	1	ENSGT00390000003721.d.a.g.a	ENSGT00390000013132.b.a	ENSGT00940000166464	ENSGT00940000174829	ENSGT00940000154791.sb.a	ENSGT00940000154089.a.c	ENSGT00950000182835.c.d.c.a	ENSGT00390000016233.e.a	ENSGT00390000008947	ENSGT00940000158489.a.b	ENSGT00950000183091.B.b	ENSGT00940000156490.b.b	ENSGT00940000165182.d	ENSGT00940000155218.A.c	ENSGT00940000156010.eb #21	ENSGT00390000011620.a.a.b.e #22	ENSGT00940000158073.b #23	ENSGT00940000177296	ENSGT00940000160902.c.a	ENSGT00390000018730.A.f.l	ENSGT00940000154897.r	ENSGT00950000183021.a.b.d	ENSGT00940000161109	ENSGT00940000166926	ENSGT00940000164502.a.b	ENSGT00940000156477.d.a	ENSGT00950000182872.f.a.a.a.b.f	ENSGT00940000160331	ENSGT00390000018330	ENSGT00940000160318.c.b	ENSGT00940000154681.b.d
Haplochromini_A	ANCESTRAL SPECIES		ENSGT00390000003721.d.a.g.a	ENSGT00390000013132.b.a	ENSGT00940000166464	ENSGT00940000174829	ENSGT00940000154791.sb.a	ENSGT00940000154089.a.c	ENSGT00950000182835.c.d.c.a	ENSGT00390000016233.e.a	ENSGT00390000008947	ENSGT00940000158489.a.b	ENSGT00950000183091.B.b	ENSGT00940000156490.b.b	ENSGT00940000165182.d	ENSGT00940000155218.A.c	ENSGT00940000156010.eb #21	ENSGT00390000011620.a.a.b.e #22	ENSGT00940000158073.b #23	ENSGT00940000177296	ENSGT00940000160902.c.a	ENSGT00390000018730.A.f.l	ENSGT00940000154897.r	ENSGT00950000183021.a.b.d	ENSGT00940000161109	ENSGT00940000166926	ENSGT00940000164502.a.b	ENSGT00940000156477.d.a	ENSGT00950000182872.f.a.a.a.b.f	ENSGT00940000160331	ENSGT00390000018330	ENSGT00940000160318.c.b	ENSGT00940000154681.b.d
Haplochromini_B	ANCESTRAL SPECIES		ENSGT00390000013132.b.a	ENSGT00940000166464	ENSGT00940000174829	ENSGT00940000154791.sb.a	ENSGT00940000154791.rb	ENSGT00940000154089.a.c	ENSGT00950000182835.c.d.c.a	ENSGT00390000016233.e.a	ENSGT00390000008947	ENSGT00940000158489.a.b	ENSGT00950000183091.B.b	ENSGT00940000156490.b.b	ENSGT00940000165182.d	ENSGT00940000155218.A.c	ENSGT00940000156010.eb #21	ENSGT00390000011620.a.a.b.e #22	ENSGT00940000158073.b #23	ENSGT00940000177296	ENSGT00940000160902.c.a	ENSGT00390000018730.A.f.k.b	ENSGT00390000018730.A.f.k.a	ENSGT00940000161930	ENSGT00390000002821	ENSGT00940000155532	ENSGT00940000154897.r	ENSGT00950000183021.a.b.d	ENSGT00940000161109	ENSGT00940000166926	ENSGT00940000164502.a.b	ENSGT00940000156477.d.a	ENSGT00950000182872.f.a.a.a.b.f
Zebra mbuna	MODERN SPECIES	93						ENSMZEG00005000673	mapkapk3 (ENSMZEG00005000733)	pfkfb4a (ENSMZEG00005000751)	ARPC4 (ENSMZEG00005000783)	tada3l (ENSMZEG00005000816)	RBM38 (ENSMZEG00005000849)	rae1 (ENSMZEG00005000880)	bmp7a (ENSMZEG00005000945)	ENSMZEG00005000975	LSM14B (ENSMZEG00005000987) #21	ENSMZEG00005000993 #22	cdh4 (ENSMZEG00005001019) #23
Eastern happy	MODERN SPECIES	17	ENSACLG00000019127	ENSACLG00000019141	ENSACLG00000019156	ENSACLG00000019168	mapkapk3 (ENSACLG00000019207)	pfkfb4a (ENSACLG00000019236)	ARPC4 (ENSACLG00000019398)	tada3l (ENSACLG00000019436)	RBM38 (ENSACLG00000019514)	rae1 (ENSACLG00000019520)	bmp7a (ENSACLG00000019566)	ENSACLG00000019616	LSM14B (ENSACLG00000019624) #21	ENSACLG00000019631	LSM14B (ENSACLG00000019663) #21	ENSACLG00000019690 #22	cdh4 (ENSACLG00000019714) #23	ENSACLG00000019811	ENSACLG00000019821	ENSACLG00000019829	ENSACLG00000019836	ENSACLG00000019845	ENSACLG00000019857	ENSACLG00000019879	ENSACLG00000019909	ZMYND8 (ENSACLG00000019966)	NCOA3 (ENSACLG00000020201)	id1 (ENSACLG00000020258)	sulf2a (ENSACLG00000020278)	arhgap46a (ENSACLG00000020479)	PHF20 (ENSACLG00000020535)
P. nyererei	MODERN SPECIES	473	chchd4a (ENSPNYG00000020167)	ENSPNYG00000020093	ENSPNYG00000020061	ENSPNYG00000020041	ENSPNYG00000020012	mapkapk3 (ENSPNYG00000019975)	pfkfb4a (ENSPNYG00000019923)	arpc4 (ENSPNYG00000019887)	tada3l (ENSPNYG00000019850)	RBM38 (ENSPNYG00000019727)	rae1 (ENSPNYG00000019671)	bmp7a (ENSPNYG00000019640)	ENSPNYG00000019630	ENSPNYG00000019619	ENSPNYG00000019601 #21	ENSPNYG00000019582 #22	cdh4 (ENSPNYG00000019555) #23	ENSPNYG00000019535	ENSPNYG00000019519	ENSPNYG00000019502	ENSPNYG00000019471	ENSPNYG00000019467	ENSPNYG00000019459	ZMYND8 (ENSPNYG00000019367)	NCOA3 (ENSPNYG00000019315)	id1 (ENSPNYG00000019305)	sulf2a (ENSPNYG00000019254)	arhgap46a (ENSPNYG00000019205)	PHF20 (ENSPNYG00000019175)	ndrg3a (ENSPNYG00000019122)	ENSPNYG00000019096
Burton s mouthbrooder	MODERN SPECIES	279	ENSHBUG00000011506	ENSHBUG00000011529	ENSHBUG00000011544	ENSHBUG00000011568	ENSHBUG00000011611	mapkapk3 (ENSHBUG00000011621)	pfkfb4a (ENSHBUG00000011691)	arpc4 (ENSHBUG00000011724)	tada3l (ENSHBUG00000011757)	RBM38 (ENSHBUG00000011778)	rae1 (ENSHBUG00000011788)	bmp7a (ENSHBUG00000011813)	ENSHBUG00000011818	ENSHBUG00000011850	ENSHBUG00000011864 #21	ENSHBUG00000011873 #22	cdh4 (ENSHBUG00000011974) #23	ENSHBUG00000011989	ogfr2 (ENSHBUG00000012008)	ENSHBUG00000012037	ENSHBUG00000012047	ZMYND8 (ENSHBUG00000012749)	NCOA3 (ENSHBUG00000012914)	id1 (ENSHBUG00000012928)	sulf2a (ENSHBUG00000013122)	arhgap46a (ENSHBUG00000013204)	PHF20 (ENSHBUG00000013233)	ndrg3a (ENSHBUG00000013277)	ENSHBUG00000013299	ENSHBUG00000013313	trpc4apa (ENSHBUG00000013367)
Lyretail cichlid	MODERN SPECIES	296	ip6k2a (ENSNBRG00000022225)	SEC61A1 (ENSNBRG00000022251)	chchd4a (ENSNBRG00000022279)	ENSNBRG00000022298	DNAH1 (ENSNBRG00000022360)	mapkapk3 (ENSNBRG00000022459)	pfkfb4a (ENSNBRG00000022474)	arpc4 (ENSNBRG00000022499)	tada3l (ENSNBRG00000022521)	RBM38 (ENSNBRG00000022545)	rae1 (ENSNBRG00000022557)	bmp7a (ENSNBRG00000022577)	ENSNBRG00000022586	ENSNBRG00000022596	ENSNBRG00000022606 #21	ENSNBRG00000022625 #22	cdh4 (ENSNBRG00000022687) #23	ENSNBRG00000022708	ENSNBRG00000022733	ogfr2 (ENSNBRG00000022773)	ENSNBRG00000022778	ENSNBRG00000022786	ZMYND8 (ENSNBRG00000022800)	NCOA3 (ENSNBRG00000022831)	id1 (ENSNBRG00000022856)	sulf2a (ENSNBRG00000022867)	arhgap46a (ENSNBRG00000022903)	PHF20 (ENSNBRG00000022942)	ndrg3a (ENSNBRG00000022974)	SLA2 (ENSNBRG00000023001)	trpc4apa (ENSNBRG00000023021)
Nile tilapia	MODERN SPECIES	17	ENSONIG00000035329	ip6k2a (ENSONIG00000037204)	SEC61A1 (ENSONIG00000020330)	chchd4a (ENSONIG00000028449)	ENSONIG00000020329	mapkapk3 (ENSONIG00000029677)	pfkfb4a (ENSONIG00000020327)	arpc4 (ENSONIG00000039568)	tada3l (ENSONIG00000020325)	RBM38 (ENSONIG00000020324)	rae1 (ENSONIG00000020323)	bmp7a (ENSONIG00000031028)	ENSONIG00000020321	ENSONIG00000020319	LSM14B (ENSONIG00000020318) #21	ENSONIG00000020317 #22	cdh4 (ENSONIG00000020316) #23	ENSONIG00000032490	ENSONIG00000029288	ENSONIG00000038101	ENSONIG00000020315	ZMYND8 (ENSONIG00000020314)	NCOA3 (ENSONIG00000020313)	id1 (ENSONIG00000040265)	sulf2a (ENSONIG00000020311)	arhgap46a (ENSONIG00000020310)	PHF20 (ENSONIG00000020309)	ndrg3a (ENSONIG00000020308)	ENSONIG00000038267	trpc4apa (ENSONIG00000020307)	myh7ba (ENSONIG00000020306)
Midas cichlid	MODERN SPECIES	1043	SEC61A1 (ENSACIG00000013257)	chchd4a (ENSACIG00000013246)	ENSACIG00000013194	DNAH1 (ENSACIG00000013027)	mapkapk3 (ENSACIG00000012743)	pfkfb4a (ENSACIG00000012682)	ARPC4 (ENSACIG00000012667)	tada3l (ENSACIG00000012641)	RBM38 (ENSACIG00000012502)	rae1 (ENSACIG00000012474)	bmp7a (ENSACIG00000012446)	ENSACIG00000012413	ENSACIG00000012389	ENSACIG00000012314	LSM14B (ENSACIG00000012266) #21	TAF4 (ENSACIG00000012238) #22	cdh4 (ENSACIG00000012125) #23	ENSACIG00000012101	ogfr2 (ENSACIG00000012087)	ENSACIG00000012081	ENSACIG00000012057	ZMYND8 (ENSACIG00000012003)	NCOA3 (ENSACIG00000011947)	id1 (ENSACIG00000011866)	sulf2a (ENSACIG00000011829)	arhgap46a (ENSACIG00000011796)	PHF20 (ENSACIG00000011707)	ndrg3a (ENSACIG00000011670)	ENSACIG00000011644	trpc4apa (ENSACIG00000011610)	ENSACIG00000011366
Atherinomorphae	ANCESTRAL SPECIES	2	ENSGT00390000013132.b.a	ENSGT00940000166464	ENSGT00940000174829	ENSGT00940000154791	ENSGT00940000154089.a.c	ENSGT00950000182835.c.d.c.a	ENSGT00390000016233.e.a	ENSGT00390000008947	ENSGT00940000158489.a.b	ENSGT00950000183091.B.b	ENSGT00940000156490.b.b	ENSGT00390000005939.a.b.b	ENSGT00940000165182.d	ENSGT00940000155218.A.c	ENSGT00940000156010.eb #21	ENSGT00390000011620.a.a.b.e #22	ENSGT00940000158073.b #23	ENSGT00940000177296	ENSGT00940000154897.r	ENSGT00950000183021.a.b.d	ENSGT00940000161109	ENSGT00940000166926	ENSGT00940000164502.a.b	ENSGT00940000156477.d.a	ENSGT00950000182872.f.a.a.a.b	ENSGT00940000160331	ENSGT00390000018330	ENSGT00940000154681.b.d	ENSGT00940000156917.b	ENSGT00390000018123.b	ENSGT00940000155006.e.a
Cyprinodontiformes	ANCESTRAL SPECIES	2	ENSGT00390000013132.b.a	ENSGT00940000166464	ENSGT00940000174829	ENSGT00940000154791	ENSGT00940000154089.a.c	ENSGT00950000182835.c.d.c.a	ENSGT00390000016233.e.a	ENSGT00390000008947	ENSGT00940000158489.a.b	ENSGT00950000183091.B.b	ENSGT00940000156490.b.b	ENSGT00390000005939.a.b.b	ENSGT00940000165182.d	ENSGT00940000155218.A.c	ENSGT00940000156010.eb #21	ENSGT00390000011620.a.a.b.e #22	ENSGT00940000158073.b #23	ENSGT00940000177296	ENSGT00940000154897.r	ENSGT00950000183021.a.b.d	ENSGT00940000161109	ENSGT00940000166926	ENSGT00940000164502.a.b	ENSGT00940000156477.d.a	ENSGT00950000182872.f.a.a.a.b	ENSGT00940000160331	ENSGT00390000018330	ENSGT00940000154681.b.d	ENSGT00940000156917.b	ENSGT00390000018123.b	ENSGT00940000155006.e.a
Aplocheiloidei	ANCESTRAL SPECIES	270															ENSGT00940000156010.eb #21	ENSGT00390000011620.a.a.b.e #22	ENSGT00940000158073.b #23	ENSGT00940000160902.c.a	ENSGT00390000018730.A.f	ENSGT00940000155532	ENSGT00940000154897.r
Turquoise killifish	MODERN SPECIES	1619	RAD54L2 (ENSNFUG00015020178)	bap1 (ENSNFUG00015019765)	CR936337.1 (ENSNFUG00015019683)	CABZ01112331.1 (ENSNFUG00015019659)	itih3b.2 (ENSNFUG00015019214)	ENSNFUG00015019184	ENSNFUG00015019180	NINJ1 (ENSNFUG00015019156)	card19 (ENSNFUG00015019146)	BICD2 (ENSNFUG00015019143)	TKT (ENSNFUG00015018411)	cacna1da (ENSNFUG00015014157)	parapinopsinb (ENSNFUG00015013893)	ENSNFUG00015013050	LSM14B (ENSNFUG00015012921) #21	ENSNFUG00015012892 #22	ENSNFUG00015012885	CDH4 (ENSNFUG00015008687) #23	ENSNFUG00015008599	ogfr2 (ENSNFUG00015008591)	ENSNFUG00015008552	ZMYND8 (ENSNFUG00015007426)	ENSNFUG00015007329	NCKIPSD (ENSNFUG00015007118)	NDUFAF3 (ENSNFUG00015007106)	zgc:112334 (ENSNFUG00015007045)	TMEM43 (ENSNFUG00015007014)	RHOA (ENSNFUG00015006998)	twf2b (ENSNFUG00015006988)	WDR82 (ENSNFUG00015006977)	RPUSD4 (ENSNFUG00015006958)
Mangrove rivulus	MODERN SPECIES	258														ENSKMAG00000017476	LSM14B (ENSKMAG00000017524) #21	ENSKMAG00000017543 #22	cdh4 (ENSKMAG00000017570) #23	ENSKMAG00000017595	ogfr2 (ENSKMAG00000017615)	ENSKMAG00000017650	ZMYND8 (ENSKMAG00000017741)
Cyprinodontoidei	ANCESTRAL SPECIES	4	ENSGT00390000013132.b.a	ENSGT00940000166464	ENSGT00940000174829	ENSGT00940000154791	ENSGT00940000154089.a.c	ENSGT00950000182835.c.d.c.a	ENSGT00390000016233.e.a	ENSGT00390000008947	ENSGT00940000158489.a.b	ENSGT00950000183091.B.b	ENSGT00940000156490.b.b	ENSGT00390000005939.a.b.b	ENSGT00940000165182.d	ENSGT00940000155218.A.c	ENSGT00940000156010.eb #21	ENSGT00390000011620.a.a.b.e #22	ENSGT00940000158073.b #23	ENSGT00940000177296	ENSGT00940000154664.h.n.c.c	ENSGT00940000160902.c.a	ENSGT00390000018730.A.f	ENSGT00940000154897.r	ENSGT00950000183021.a.b.d	ENSGT00940000161109	ENSGT00940000166926	ENSGT00940000164502.a.b	ENSGT00940000156477.d.a	ENSGT00950000182872.f.a.a.a.b	ENSGT00940000160331	ENSGT00390000018330	ENSGT00940000154681.b.d
Poeciliinae	ANCESTRAL SPECIES	4	ENSGT00390000013132.b.a	ENSGT00940000166464	ENSGT00940000174829	ENSGT00940000154791	ENSGT00940000154089.a.c	ENSGT00950000182835.c.d.c.a	ENSGT00390000016233.e.a	ENSGT00390000008947	ENSGT00940000158489.a.b	ENSGT00950000183091.B.b	ENSGT00940000156490.b.b.f	ENSGT00390000005939.a.b.b	ENSGT00940000165182.d	ENSGT00940000155218.A.c	ENSGT00940000156010.eb #21	ENSGT00390000011620.a.a.b.e #22	ENSGT00940000158073.b #23	ENSGT00940000177296	ENSGT00940000154664.h.n.c.c	ENSGT00940000160902.c.a	ENSGT00390000018730.A.f	ENSGT00940000154897.r	ENSGT00950000183021.a.b.d	ENSGT00940000161109	ENSGT00940000166926	ENSGT00940000164502.a.b	ENSGT00940000156477.d.a	ENSGT00950000182872.f.a.a.a.b	ENSGT00940000160331	ENSGT00390000018330	ENSGT00940000154681.b.d
Poecilia	ANCESTRAL SPECIES	20	ENSGT00390000013132.b.a	ENSGT00940000166464	ENSGT00940000174829	ENSGT00940000154791	ENSGT00940000154089.a.c	ENSGT00950000182835.c.d.c.a	ENSGT00390000016233.e.a	ENSGT00390000008947	ENSGT00940000158489.a.b	ENSGT00950000183091.B.b	ENSGT00940000156490.b.b.f	ENSGT00390000005939.a.b.b	ENSGT00940000165182.d	ENSGT00940000155218.A.c	ENSGT00940000156010.eb #21	ENSGT00390000011620.a.a.b.e #22	ENSGT00940000158073.b #23	ENSGT00940000154664.h.n.c.c	ENSGT00940000160902.c.a	ENSGT00390000018730.A.f	ENSGT00940000154897.r	ENSGT00950000183021.a.b.d	ENSGT00940000161109	ENSGT00940000166926	ENSGT00940000164502.a.b	ENSGT00940000156477.d.a	ENSGT00950000182872.f.a.a.a.b	ENSGT00940000160331	ENSGT00390000018330	ENSGT00940000154681.b.d	ENSGT00940000156917.b
NAME_6	ANCESTRAL SPECIES	87	ENSGT00390000003721.d.a.g.a	ENSGT00390000013132.b.a	ENSGT00940000166464	ENSGT00940000154791	ENSGT00940000154089.a.c	ENSGT00950000182835.c.d.c.a	ENSGT00390000016233.e.a	ENSGT00390000008947	ENSGT00940000158489.a.b	ENSGT00950000183091.B.b	ENSGT00940000156490.b.b.f	ENSGT00390000005939.a.b.b	ENSGT00940000165182.d	ENSGT00940000155218.A.c	ENSGT00940000156010.eb #21	ENSGT00390000011620.a.a.b.e #22	ENSGT00940000158073.b #23	ENSGT00940000154664.h.n.c.c	ENSGT00940000160902.c.a	ENSGT00390000018730.A.f	ENSGT00940000154897.r	ENSGT00950000183021.a.b.d	ENSGT00940000161109	ENSGT00940000166926	ENSGT00940000164502.a.b	ENSGT00940000156477.d.a	ENSGT00950000182872.f.a.a.a.b	ENSGT00940000160331	ENSGT00390000018330	ENSGT00940000154681.b.d	ENSGT00940000156917.b
Amazon molly	MODERN SPECIES	397	SEC61A1 (ENSPFOG00000004249)	chchd4a (ENSPFOG00000004345)	ENSPFOG00000004349	ENSPFOG00000022968	mapkapk3 (ENSPFOG00000004547)	pfkfb4a (ENSPFOG00000004751)	arpc4 (ENSPFOG00000004975)	tada3l (ENSPFOG00000005009)	ENSPFOG00000005096	rae1 (ENSPFOG00000005141)	bmp7a (ENSPFOG00000005295)	ENSPFOG00000023374	ENSPFOG00000005524	ENSPFOG00000005537	LSM14B (ENSPFOG00000005631) #21	ENSPFOG00000005685 #22	cdh4 (ENSPFOG00000005823) #23	KLHL10 (ENSPFOG00000006200)	KCNK15 (ENSPFOG00000006298)	ogfr2 (ENSPFOG00000006323)	ENSPFOG00000006372	ZMYND8 (ENSPFOG00000006444)	NCOA3 (ENSPFOG00000006902)	id1 (ENSPFOG00000020643)	sulf2a (ENSPFOG00000007237)	arhgap46a (ENSPFOG00000007534)	ENSPFOG00000007723
Sailfin molly	MODERN SPECIES	569	ENSPLAG00000002739	ip6k2a (ENSPLAG00000002717)	SEC61A1 (ENSPLAG00000002699)	chchd4a (ENSPLAG00000002678)	ENSPLAG00000002673	DNAH1 (ENSPLAG00000002643)	mapkapk3 (ENSPLAG00000002567)	pfkfb4a (ENSPLAG00000002556)	arpc4 (ENSPLAG00000002517)	tada3l (ENSPLAG00000002510)	RBM38 (ENSPLAG00000002500)	rae1 (ENSPLAG00000002492)	bmp7a (ENSPLAG00000002472)	ENSPLAG00000002454	ENSPLAG00000002449 #21	ENSPLAG00000002446 #22
Guppy	MODERN SPECIES	457	chchd4a (ENSPREG00000017537)	ENSPREG00000017523	ENSPREG00000017506	ENSPREG00000017486	ENSPREG00000017468	ENSPREG00000017427	mapkapk3 (ENSPREG00000017075)	pfkfb4a (ENSPREG00000016856)	ARPC4 (ENSPREG00000016817)	tada3l (ENSPREG00000016773)	ENSPREG00000016652	rae1 (ENSPREG00000016576)	bmp7a (ENSPREG00000016545)	ENSPREG00000016531	ENSPREG00000016484 #21	ENSPREG00000016418 #22	cdh4 (ENSPREG00000016351) #23	CDH22 (ENSPREG00000016269)	tfap2c (ENSPREG00000016210)	GCNT7 (ENSPREG00000016184)	rtf2 (ENSPREG00000016166)	eya2 (ENSPREG00000016135)	tgm5l (ENSPREG00000016059)	pxmp4 (ENSPREG00000016021)	tgm5l (ENSPREG00000015982)	pxmp4 (ENSPREG00000015951)	itcha (ENSPREG00000015924)	bloc1s1 (ENSPREG00000015906)	rdh5 (ENSPREG00000015896)	gls2b (ENSPREG00000015852)	ENSPREG00000015836
Platyfish	MODERN SPECIES	12	ENSXMAG00000010223	ENSXMAG00000027752	ENSXMAG00000029051	ENSXMAG00000028173	ENSXMAG00000010195	mapkapk3 (ENSXMAG00000010191)	pfkfb4a (ENSXMAG00000010108)	arpc4 (ENSXMAG00000010093)	tada3l (ENSXMAG00000010075)	ENSXMAG00000028579	rae1 (ENSXMAG00000010051)	bmp7a (ENSXMAG00000010031)	ENSXMAG00000010028	ENSXMAG00000010019	ENSXMAG00000010013 #21	ENSXMAG00000010003 #22	KLHL10 (ENSXMAG00000009983)	ENSXMAG00000025212	ENSXMAG00000026588	ENSXMAG00000026384	cdh4 (ENSXMAG00000009921) #23	KCNK15 (ENSXMAG00000027413)	ENSXMAG00000009909	ENSXMAG00000009898	ZMYND8 (ENSXMAG00000009815)	NCOA3 (ENSXMAG00000001970)	id1 (ENSXMAG00000027482)	sulf2a (ENSXMAG00000026216)	ENSXMAG00000025875	arhgap46a (ENSXMAG00000009796)	ENSXMAG00000009778
NAME_4	ANCESTRAL SPECIES	96	ENSGT00940000156310.p	ENSGT00390000003721.d.a.g.a	ENSGT00390000013132.b.a	ENSGT00940000166464	ENSGT00940000154791	ENSGT00940000154089.a.c	ENSGT00950000182835.c.d.c.a	ENSGT00390000016233.e.a	ENSGT00390000008947	ENSGT00940000158489.a.b	ENSGT00950000183091.B.b	ENSGT00940000156490.b.b	ENSGT00940000165182.d	ENSGT00940000155218.A.c	ENSGT00940000156010.eb #21	ENSGT00390000011620.a.a.b.e #22	ENSGT00940000158073.b #23	ENSGT00940000177296
Mummichog	MODERN SPECIES	2193	SEC61A1 (ENSFHEG00000005808)	chchd4a (ENSFHEG00000005818)	ENSFHEG00000000153	ENSFHEG00000005843	ENSFHEG00000005957	mapkapk3 (ENSFHEG00000005970)	pfkfb4a (ENSFHEG00000006050)	ARPC4 (ENSFHEG00000006069)	tada3l (ENSFHEG00000006115)	RBM38 (ENSFHEG00000006160)	rae1 (ENSFHEG00000006179)	bmp7a (ENSFHEG00000006206)	ENSFHEG00000000168	ENSFHEG00000006228	LSM14B (ENSFHEG00000006237) #21	TAF4 (ENSFHEG00000006248) #22	ENSFHEG00000006261 #23	cdh4 (ENSFHEG00000006543) #23	ENSFHEG00000006572
Sheepshead minnow	DUPLICATION
Sheepshead minnow	MODERN SPECIES	690																ENSCVAG00000021140 #22	cdh4 (ENSCVAG00000021193) #23
Sheepshead minnow	MODERN SPECIES	1288						ENSCVAG00000005291	pfkfb4a (ENSCVAG00000000972)	arpc4 (ENSCVAG00000005409)	tada3l (ENSCVAG00000005465)	RBM38 (ENSCVAG00000005472)	rae1 (ENSCVAG00000005499)	bmp7a (ENSCVAG00000000160)	ENSCVAG00000005527	ENSCVAG00000005549	ENSCVAG00000005570 #21	ENSCVAG00000005577 #22
Oryzias	ANCESTRAL SPECIES	1	ENSGT00620000088018	ENSGT00390000014109	ENSGT00530000065109	ENSGT00510000048121	ENSGT00940000154089.a.c	ENSGT00950000182835.c.d.c.a	ENSGT00390000016233.e.a	ENSGT00390000008947	ENSGT00940000158489.a.b	ENSGT00950000183091.B.b	ENSGT00940000156490.b.b	ENSGT00390000005939.a.b.b	ENSGT00940000165182.d	ENSGT00940000155218.A.c	ENSGT00940000156010.eb #21	ENSGT00390000011620.a.a.b.e #22	ENSGT00940000158073.b #23	ENSGT00940000177296	ENSGT00940000154897.r	ENSGT00950000183021.a.b.d	ENSGT00940000161109	ENSGT00940000166926	ENSGT00940000164502.a.b	ENSGT00940000156477.d.a	ENSGT00950000182872.f.a.a.a.b	ENSGT00940000160331	ENSGT00390000018330	ENSGT00940000154681.b.d	ENSGT00940000156917.b	ENSGT00390000018123.b	ENSGT00940000155006.e.a
Oryzias_a	ANCESTRAL SPECIES	5	ENSGT00620000088018	ENSGT00390000014109	ENSGT00530000065109	ENSGT00510000048121	ENSGT00940000154089.a.c	ENSGT00950000182835.c.d.c.a	ENSGT00390000016233.e.a	ENSGT00390000008947	ENSGT00940000158489.a.b	ENSGT00950000183091.B.b	ENSGT00940000156490.b.b	ENSGT00390000005939.a.b.b	ENSGT00940000165182.d	ENSGT00940000155218.A.c	ENSGT00940000156010.eb #21	ENSGT00390000011620.a.a.b.e #22	ENSGT00940000158073.b #23	ENSGT00940000177296	ENSGT00940000154897.r	ENSGT00950000183021.a.b.d	ENSGT00940000161109	ENSGT00940000166926	ENSGT00940000164502.a.b	ENSGT00940000156477.d.a	ENSGT00950000182872.f.a.a.a.b	ENSGT00940000160331	ENSGT00390000018330	ENSGT00940000154681.b.d	ENSGT00940000156917.b	ENSGT00390000018123.b	ENSGT00940000155006.e.a
Japanese Medaka HdrR	MODERN SPECIES	19	ENSORLG00000013213	CFAP57 (ENSORLG00000013222)	isy1 (ENSORLG00000013250)	HTD2 (ENSORLG00000013267)	RPP14 (ENSORLG00000028025)	ENSORLG00000013296	pfkfb4a (ENSORLG00000013355)	arpc4 (ENSORLG00000001339)	tada3l (ENSORLG00000013394)	RBM38 (ENSORLG00000027180)	rae1 (ENSORLG00000013438)	bmp7a (ENSORLG00000013494)	ENSORLG00000027733	ENSORLG00000026420	LSM14B (ENSORLG00000013525) #21	ENSORLG00000013539 #22	cdh4 (ENSORLG00000013559) #23	ENSORLG00000026944	ENSORLG00000022878	ENSORLG00000013611	ENSORLG00000013704	id1 (ENSORLG00000013719)	sulf2a (ENSORLG00000013752)	arhgap46a (ENSORLG00000013769)	PHF20 (ENSORLG00000013802)	ndrg3a (ENSORLG00000013821)	ENSORLG00000013828	trpc4apa (ENSORLG00000013852)	snai1a (ENSORLG00000023047)	ENSORLG00000024833	ENSORLG00000013875
Chinese medaka	MODERN SPECIES	655	EFCC1 (ENSOSIG00000017427)	isy1 (ENSOSIG00000017420)	HTD2 (ENSOSIG00000017415)	RPP14 (ENSOSIG00000017411)	ENSOSIG00000016984	pfkfb4a (ENSOSIG00000016844)	arpc4 (ENSOSIG00000016829)	tada3l (ENSOSIG00000016827)	RBM38 (ENSOSIG00000016826)	rae1 (ENSOSIG00000016824)	bmp7a (ENSOSIG00000016656)	ENSOSIG00000016649	ENSOSIG00000016647	ENSOSIG00000016644	LSM14B (ENSOSIG00000016642) #21	ENSOSIG00000016641 #22	cdh4 (ENSOSIG00000016623) #23	ENSOSIG00000016614	ENSOSIG00000016612	ENSOSIG00000016610	ZMYND8 (ENSOSIG00000016569)	NCOA3 (ENSOSIG00000016560)	id1 (ENSOSIG00000016556)	sulf2a (ENSOSIG00000016461)	arhgap46a (ENSOSIG00000016450)	ENSOSIG00000016438	ndrg3a (ENSOSIG00000013905)	ENSOSIG00000013872	trpc4apa (ENSOSIG00000011196)	snai1a (ENSOSIG00000011180)	ENSOSIG00000011178
Oryzias_b	ANCESTRAL SPECIES	3	ENSGT00620000088018	ENSGT00390000014109	ENSGT00530000065109	ENSGT00510000048121	ENSGT00940000154089.a.c	ENSGT00950000182835.c.d.c.a	ENSGT00390000016233.e.a	ENSGT00390000008947	ENSGT00940000158489.a.b	ENSGT00950000183091.B.b	ENSGT00940000156490.b.b	ENSGT00390000005939.a.b.b	ENSGT00940000165182.d	ENSGT00940000155218.A.c	ENSGT00940000156010.eb #21	ENSGT00390000011620.a.a.b.e #22	ENSGT00940000158073.b #23	ENSGT00940000154897.r	ENSGT00950000183021.a.b.d	ENSGT00940000161109	ENSGT00940000166926	ENSGT00940000164502.a.b	ENSGT00940000156477.d.a	ENSGT00950000182872.f.a.a.a.b	ENSGT00940000160331	ENSGT00390000018330	ENSGT00940000154681.b.d	ENSGT00940000156917.b	ENSGT00390000018123.b	ENSGT00940000155006.e.a	ENSGT00950000182893.a.a.b.b
Indian medaka	MODERN SPECIES	8	CDK18 (ENSOMEG00000023903)	CFAP57 (ENSOMEG00000023904)	isy1 (ENSOMEG00000023905)	HTD2 (ENSOMEG00000023906)	rpp14 (ENSOMEG00000023907)	mapkapk3 (ENSOMEG00000023908)	pfkfb4a (ENSOMEG00000023909)	arpc4 (ENSOMEG00000023910)	tada3l (ENSOMEG00000023911)	RBM38 (ENSOMEG00000023912)	rae1 (ENSOMEG00000023913)	bmp7a (ENSOMEG00000023914)	ENSOMEG00000023915	ENSOMEG00000023916	LSM14B (ENSOMEG00000023917) #21	ENSOMEG00000023918 #22	cdh4 (ENSOMEG00000023919) #23	ENSOMEG00000023920	ZMYND8 (ENSOMEG00000023921)	NCOA3 (ENSOMEG00000023922)	id1 (ENSOMEG00000023923)	sulf2a (ENSOMEG00000023924)	arhgap46a (ENSOMEG00000023925)	ENSOMEG00000023815	ndrg3a (ENSOMEG00000000639)	ENSOMEG00000023796	trpc4apa (ENSOMEG00000023783)	snai1a (ENSOMEG00000023773)	ENSOMEG00000000745	ENSOMEG00000023760	top1a (ENSOMEG00000023745)
Javanese ricefish	MODERN SPECIES	19	EFCC1 (ENSOJAG00000010082)	CFAP57 (ENSOJAG00000010057)	isy1 (ENSOJAG00000010039)	rpp14 (ENSOJAG00000010026)	ENSOJAG00000009609	pfkfb4a (ENSOJAG00000003803)	ARPC4 (ENSOJAG00000003075)	tada3l (ENSOJAG00000003061)	RBM38 (ENSOJAG00000003047)	rae1 (ENSOJAG00000003015)	bmp7a (ENSOJAG00000002999)	ENSOJAG00000002991	ENSOJAG00000002977	ENSOJAG00000002961	LSM14B (ENSOJAG00000002952) #21	ENSOJAG00000002896 #22	cdh4 (ENSOJAG00000001334) #23	ENSOJAG00000001046	ENSOJAG00000001033	ZMYND8 (ENSOJAG00000000530)	ENSOJAG00000000167	id1 (ENSOJAG00000000108)	sulf2a (ENSOJAG00000022902)	arhgap46a (ENSOJAG00000022861)	PHF20 (ENSOJAG00000022842)	ndrg3a (ENSOJAG00000022739)	ENSOJAG00000022710	trpc4apa (ENSOJAG00000022441)	snai1a (ENSOJAG00000022353)	ENSOJAG00000022221	top1a (ENSOJAG00000021632)
Percomorphaceae_C	ANCESTRAL SPECIES	1	ENSGT00390000013132.b.a	ENSGT00940000166464	ENSGT00940000174829	ENSGT00940000154791	ENSGT00940000154089.a.c	ENSGT00950000182835.c.d.c.a	ENSGT00390000016233.e.a	ENSGT00390000008947	ENSGT00940000158489.a.b	ENSGT00950000183091.B.b	ENSGT00940000156490.b.b	ENSGT00390000005939.a.b.b	ENSGT00940000165182.d	ENSGT00940000155218.A.c	ENSGT00940000156010.eb #21	ENSGT00390000011620.a.a.b.e #22	ENSGT00940000158073.b #23	ENSGT00940000177296	ENSGT00940000160902.c.a	ENSGT00390000018730.A.f	ENSGT01100000265393	ENSGT00940000154897.r	ENSGT00950000183021.a.b.d	ENSGT00940000161109	ENSGT00940000166926	ENSGT00940000164502.a.b	ENSGT00940000156477.d.a	ENSGT00950000182872.f.a.a.a.b	ENSGT00940000160331	ENSGT00390000018330	ENSGT00940000160318.c.b
Eupercaria	ANCESTRAL SPECIES		ENSGT00390000003721.d.a.g.a	ENSGT00390000013132.b.a	ENSGT00940000166464	ENSGT00940000154791	ENSGT00940000154089.a.c	ENSGT00950000182835.c.d.c.a	ENSGT00390000016233.e.a	ENSGT00390000008947	ENSGT00940000158489.a.b	ENSGT00950000183091.B.b	ENSGT00940000156490.b.b	ENSGT00390000005939.a.b.b	ENSGT00940000165182.d	ENSGT00940000155218.A.c	ENSGT00940000156010.eb #21	ENSGT00390000011620.a.a.b.e #22	ENSGT00940000158073.b #23	ENSGT00940000177296	ENSGT00940000160902.c.a	ENSGT00390000018730.A.f	ENSGT01100000265393	ENSGT00940000154897.r	ENSGT00950000183021.a.b.d	ENSGT00940000161109	ENSGT00940000166926	ENSGT00940000164502.a.b	ENSGT00940000156477.d.a	ENSGT00950000182872.f.a.a.a.b	ENSGT00940000160331	ENSGT00390000018330	ENSGT00940000160318.c.b
Eupecaria_A	ANCESTRAL SPECIES		ENSGT00390000003721.d.a.g.a	ENSGT00390000013132.b.a	ENSGT00940000166464	ENSGT00940000154791	ENSGT00940000154089.a.c	ENSGT00950000182835.c.d.c.a	ENSGT00390000016233.e.a	ENSGT00390000008947	ENSGT00940000158489.a.b	ENSGT00950000183091.B.b	ENSGT00940000156490.b.b	ENSGT00390000005939.a.b.b	ENSGT00940000165182.d	ENSGT00940000155218.A.c	ENSGT00940000156010.eb #21	ENSGT00390000011620.a.a.b.e #22	ENSGT00940000158073.b #23	ENSGT00940000177296	ENSGT00940000160902.c.a	ENSGT00390000018730.A.f	ENSGT01100000265393	ENSGT00940000154897.r	ENSGT00950000183021.a.b.d	ENSGT00940000161109	ENSGT00940000166926	ENSGT00940000164502.a.b	ENSGT00940000156477.d.a	ENSGT00950000182872.f.a.a.a.b	ENSGT00940000160331	ENSGT00390000018330	ENSGT00940000160318.c.b
Ballan wrasse	MODERN SPECIES	61	SEC61A1 (ENSLBEG00000015811)	chchd4a (ENSLBEG00000015886)	ENSLBEG00000015858	ENSLBEG00000015912	mapkapk3 (ENSLBEG00000015951)	pfkfb4a (ENSLBEG00000015991)	ENSLBEG00000016013	ARPC4 (ENSLBEG00000016032)	tada3l (ENSLBEG00000016074)	RBM38 (ENSLBEG00000016163)	rae1 (ENSLBEG00000016318)	bmp7a (ENSLBEG00000016352)	ENSLBEG00000016364	ENSLBEG00000016384	LSM14B (ENSLBEG00000016427) #21	ENSLBEG00000016461 #22	cdh4 (ENSLBEG00000016522) #23	ENSLBEG00000016578	ogfr2 (ENSLBEG00000016615)	ENSLBEG00000016645	ZMYND8 (ENSLBEG00000016737)	NCOA3 (ENSLBEG00000016835)	id1 (ENSLBEG00000016873)	sulf2a (ENSLBEG00000016951)	arhgap46a (ENSLBEG00000017106)	ENSLBEG00000017148	ndrg3a (ENSLBEG00000017241)	ENSLBEG00000017352	trpc4apa (ENSLBEG00000017389)	myh7ba (ENSLBEG00000017468)	snai1a (ENSLBEG00000017605)
Eupecaria_B	ANCESTRAL SPECIES	2	ENSGT00390000003721.d.a.g.a	ENSGT00390000013132.b.a	ENSGT00940000166464	ENSGT00940000154791	ENSGT00940000154089.a.c	ENSGT00950000182835.c.d.c.a	ENSGT00390000016233.e.a	ENSGT00390000008947	ENSGT00940000158489.a.b	ENSGT00950000183091.B.b	ENSGT00940000156490.b.b	ENSGT00390000005939.a.b.b	ENSGT00940000165182.d	ENSGT00940000155218.A.c	ENSGT00940000156010.eb #21	ENSGT00390000011620.a.a.b.e #22	ENSGT00940000158073.b #23	ENSGT00940000177296	ENSGT00940000160902.c.a	ENSGT00390000018730.A.f	ENSGT01100000265393	ENSGT00940000154897.r	ENSGT00950000183021.a.b.d	ENSGT00940000161109	ENSGT00940000166926	ENSGT00940000164502.a.b	ENSGT00940000156477.d.a	ENSGT00950000182872.f.a.a.a.b	ENSGT00940000160331	ENSGT00390000018330	ENSGT00940000160318.c.b
Perciformes	ANCESTRAL SPECIES		ENSGT00940000156310.p	ENSGT00390000003721.d.a.g.a	ENSGT00390000013132.b.a	ENSGT00940000166464	ENSGT00940000154791	ENSGT00940000154089.a.c	ENSGT00950000182835.c.d.c.a	ENSGT00390000016233.e.a	ENSGT00390000008947	ENSGT00940000158489.a.b	ENSGT00950000183091.B.b	ENSGT00940000156490.b.b	ENSGT00390000005939.a.b.b	ENSGT00940000165182.d	ENSGT00940000156010.eb #21	ENSGT00390000011620.a.a.b.e #22	ENSGT00940000158073.b #23	ENSGT00940000177296	ENSGT00940000160902.c.a	ENSGT00390000018730.A.f	ENSGT01100000265393	ENSGT00940000154897.r	ENSGT00950000183021.a.b.d	ENSGT00940000161109	ENSGT00940000166926	ENSGT00940000164502.a.b	ENSGT00940000156477.d.a	ENSGT00950000182872.f.a.a.a.b	ENSGT00940000160331	ENSGT00390000018330	ENSGT00940000160318.c.b
Perciformes_a	ANCESTRAL SPECIES	5	ENSGT00940000156310.p	ENSGT00390000003721.d.a.g.a	ENSGT00390000013132.b.a	ENSGT00940000166464	ENSGT00940000154791	ENSGT00940000154089.a.c	ENSGT00950000182835.c.d.c.a	ENSGT00390000016233.e.a	ENSGT00390000008947	ENSGT00940000158489.a.b	ENSGT00950000183091.B.b	ENSGT00940000156490.b.b	ENSGT00390000005939.a.b.b	ENSGT00940000165182.d	ENSGT00940000156010.eb #21	ENSGT00390000011620.a.a.b.e #22	ENSGT00940000158073.b #23	ENSGT00940000177296	ENSGT00940000160902.c.a	ENSGT00390000018730.A.f	ENSGT01100000265393	ENSGT00940000154897.r	ENSGT00950000183021.a.b.d	ENSGT00940000161109	ENSGT00940000166926	ENSGT00940000164502.a.b	ENSGT00940000156477.d.a	ENSGT00950000182872.f.a.a.a.b	ENSGT00940000160331	ENSGT00390000018330	ENSGT00940000160318.c.b
Pike perch	MODERN SPECIES	11	ENSSLUG00000018082	ip6k2a (ENSSLUG00000018105)	SEC61A1 (ENSSLUG00000018118)	chchd4a (ENSSLUG00000018298)	ENSSLUG00000018301	DNAH1 (ENSSLUG00000018382)	mapkapk3 (ENSSLUG00000019098)	pfkfb4a (ENSSLUG00000019258)	ARPC4 (ENSSLUG00000019311)	tada3l (ENSSLUG00000019358)	RBM38 (ENSSLUG00000019363)	rae1 (ENSSLUG00000019370)	bmp7a (ENSSLUG00000019378)	ENSSLUG00000019385	LSM14B (ENSSLUG00000019388) #21	ENSSLUG00000019391 #22	cdh4 (ENSSLUG00000019440) #23	ENSSLUG00000020087	ENSSLUG00000020091	ogfr2 (ENSSLUG00000020094)	ENSSLUG00000020096	ENSSLUG00000020099	ZMYND8 (ENSSLUG00000020124)	NCOA3 (ENSSLUG00000020177)	id1 (ENSSLUG00000020181)	sulf2a (ENSSLUG00000020211)	arhgap46a (ENSSLUG00000020428)	PHF20 (ENSSLUG00000020439)	ndrg3a (ENSSLUG00000020480)	ENSSLUG00000020607	trpc4apa (ENSSLUG00000020652)
Channel bull blenny	MODERN SPECIES	19	ENSCGOG00000015154	ENSCGOG00000015151	ENSCGOG00000015146	ENSCGOG00000015141	ENSCGOG00000015131	mapkapk3 (ENSCGOG00000015127)	ARPC4 (ENSCGOG00000015115)	pfkfb4a (ENSCGOG00000009602)	tada3l (ENSCGOG00000009306)	RBM38 (ENSCGOG00000009303)	rae1 (ENSCGOG00000009039)	bmp7a (ENSCGOG00000009027)	ENSCGOG00000009024	ENSCGOG00000009017	LSM14B (ENSCGOG00000009013) #21	ENSCGOG00000008986 #22	cdh4 (ENSCGOG00000006404) #23	ENSCGOG00000006369	ogfr2 (ENSCGOG00000006367)	ENSCGOG00000006364	ENSCGOG00000006359	ENSCGOG00000006357	ZMYND8 (ENSCGOG00000005046)	ENSCGOG00000005006	NCOA3 (ENSCGOG00000004967)	id1 (ENSCGOG00000004959)	sulf2a (ENSCGOG00000002949)	arhgap46a (ENSCGOG00000002851)	ENSCGOG00000002830	ndrg3a (ENSCGOG00000002580)	ENSCGOG00000002577
Cottioidei	ANCESTRAL SPECIES		ENSGT00940000156310.p	ENSGT00390000003721.d.a.g.a	ENSGT00390000013132.b.a	ENSGT00940000166464	ENSGT00940000154791	ENSGT00940000154089.a.c	ENSGT00950000182835.c.d.c.a	ENSGT00390000016233.e.a	ENSGT00390000008947	ENSGT00940000158489.a.b	ENSGT00950000183091.B.b	ENSGT00940000156490.b.b	ENSGT00940000165182.d	ENSGT00940000155218.A.c	ENSGT00940000156010.eb #21	ENSGT00390000011620.a.a.b.e #22	ENSGT00940000158073.b #23	ENSGT00940000160902.c.a	ENSGT00390000018730.A.f	ENSGT00390000002821	ENSGT00940000155532	ENSGT00940000154897.r	ENSGT00950000183021.a.b.d	ENSGT00940000161109	ENSGT00940000166926	ENSGT00940000164502.a.b	ENSGT00940000156477.d.a	ENSGT00950000182872.f.a.a.a.b	ENSGT00940000160331	ENSGT00390000018330	ENSGT00940000160318.c.b
Stickleback	MODERN SPECIES	17	ENSGACG00000009699	ip6k2a (ENSGACG00000009703)	SEC61A1 (ENSGACG00000009707)	chchd4a (ENSGACG00000009778)	ENSGACG00000009779	ENSGACG00000009785	mapkapk3 (ENSGACG00000009789)	pfkfb4a (ENSGACG00000009822)	arpc4 (ENSGACG00000009846)	tada3l (ENSGACG00000009851)	RBM38 (ENSGACG00000009873)	rae1 (ENSGACG00000009882)	bmp7a (ENSGACG00000009945)	ENSGACG00000009971	LSM14B (ENSGACG00000009973) #21	ENSGACG00000009979 #22	cdh4 (ENSGACG00000009983) #23	KCNK15 (ENSGACG00000009987)	ogfr2 (ENSGACG00000009988)	ENSGACG00000009996	ZMYND8 (ENSGACG00000010012)	NCOA3 (ENSGACG00000010036)	id1 (ENSGACG00000010046)	sulf2a (ENSGACG00000010055)	arhgap46a (ENSGACG00000010079)	PHF20 (ENSGACG00000010085)	ndrg3a (ENSGACG00000010090)	trpc4apa (ENSGACG00000010137)	snai1a (ENSGACG00000010147)	ENSGACG00000010154	ENSGACG00000010157
Lumpfish	MODERN SPECIES	20	ift52 (ENSCLMG00005019114)	acot8 (ENSCLMG00005019113)	SEC61A1 (ENSCLMG00005018984)	chchd4a (ENSCLMG00005018980)	ENSCLMG00005018979	mapkapk3 (ENSCLMG00005018910)	pfkfb4a (ENSCLMG00005018594)	arpc4 (ENSCLMG00005018588)	tada3l (ENSCLMG00005018586)	RBM38 (ENSCLMG00005018583)	rae1 (ENSCLMG00005018580)	bmp7a (ENSCLMG00005018443)	ENSCLMG00005018440	ENSCLMG00005018439	LSM14B (ENSCLMG00005018438) #21	TAF4 (ENSCLMG00005018437) #22	cdh4 (ENSCLMG00005018116) #23	ENSCLMG00005018102	ogfr2 (ENSCLMG00005018101)	ENSCLMG00005018100	ZMYND8 (ENSCLMG00005015600)	NCOA3 (ENSCLMG00005015587)	id1 (ENSCLMG00005015586)	sulf2a (ENSCLMG00005015041)	arhgap46a (ENSCLMG00005015029)	PHF20 (ENSCLMG00005015025)	ndrg3a (ENSCLMG00005014900)	ENSCLMG00005014889	trpc4apa (ENSCLMG00005013282)	myh7ba (ENSCLMG00005013269)	snai1a (ENSCLMG00005013267)
Eupecaria_C	ANCESTRAL SPECIES		ENSGT00390000003721.d.a.g.a	ENSGT00390000013132.b.a	ENSGT00940000166464	ENSGT00940000154791	ENSGT00940000154089.a.c	ENSGT00950000182835.c.d.c.a	ENSGT00390000016233.e.a	ENSGT00390000008947	ENSGT00940000158489.a.b	ENSGT00950000183091.B.b	ENSGT00940000156490.b.b	ENSGT00390000005939.a.b.b	ENSGT00940000165182.d	ENSGT00940000155218.A.c	ENSGT00940000156010.eb #21	ENSGT00390000011620.a.a.b.e #22	ENSGT00940000158073.b #23	ENSGT00940000160902.c.a	ENSGT00390000018730.A.f	ENSGT00940000154897.r	ENSGT00950000183021.a.b.d	ENSGT00940000161109	ENSGT00940000166926	ENSGT00940000164502.a.b	ENSGT00940000156477.d.a	ENSGT00950000182872.f.a.a.a.b	ENSGT00940000160331	ENSGT00390000018330	ENSGT00940000160318.c.b	ENSGT00940000154681.b.d	ENSGT00940000156917.b
Eupercaria_incertae_sedis	ANCESTRAL SPECIES		ENSGT00940000156310.p	ENSGT00390000003721.d.a.g.a	ENSGT00390000013132.b.a	ENSGT00940000166464	ENSGT00940000154791	ENSGT00950000182835.c.d.c.a	ENSGT00390000016233.e.a	ENSGT00390000008947	ENSGT00940000158489.a.b	ENSGT00950000183091.B.b	ENSGT00940000156490.b.b	ENSGT00390000005939.a.b.b	ENSGT00940000165182.d	ENSGT00940000155218.A.c	ENSGT00940000156010.eb #21	ENSGT00390000011620.a.a.b.e #22	ENSGT00940000158073.b #23	ENSGT00940000160902.c.a	ENSGT00390000018730.A.f	ENSGT00940000154897.r	ENSGT00950000183021.a.b.d	ENSGT00940000161109	ENSGT00940000166926	ENSGT00940000164502.a.b	ENSGT00940000156477.d.a	ENSGT00950000182872.f.a.a.a.b	ENSGT00940000160331	ENSGT00390000018330	ENSGT00940000160318.c.b	ENSGT00940000154681.b.d	ENSGT00940000156917.b
Large yellow croaker	MODERN SPECIES	478	ip6k2a (ENSLCRG00005014641)	SEC61A1 (ENSLCRG00005014642)	chchd4a (ENSLCRG00005014650)	ENSLCRG00005014651	DNAH1 (ENSLCRG00005014671)	ARPC4 (ENSLCRG00005014774)	pfkfb4a (ENSLCRG00005014790)	tada3l (ENSLCRG00005015134)	RBM38 (ENSLCRG00005015135)	rae1 (ENSLCRG00005015136)	bmp7a (ENSLCRG00005015137)	ENSLCRG00005015139	ENSLCRG00005015141	ENSLCRG00005015148	LSM14B (ENSLCRG00005015149) #21	ENSLCRG00005015150 #22	cdh4 (ENSLCRG00005015193) #23	ENSLCRG00005018208	ogfr2 (ENSLCRG00005018210)	ENSLCRG00005018211	ZMYND8 (ENSLCRG00005018242)	NCOA3 (ENSLCRG00005020827)	id1 (ENSLCRG00005020828)	sulf2a (ENSLCRG00005020839)	arhgap46a (ENSLCRG00005021550)	PHF20 (ENSLCRG00005021552)	ndrg3a (ENSLCRG00005021568)	ENSLCRG00005022317	trpc4apa (ENSLCRG00005022321)	myh7ba (ENSLCRG00005022334)	snai1a (ENSLCRG00005022344)
European seabass	MODERN SPECIES	10	ENSDLAG00005033303	ENSDLAG00005019685	ENSDLAG00005019522	MIA40 (ENSDLAG00005028012)	ENSDLAG00005019493	ENSDLAG00005014576	pfkfb4a (ENSDLAG00005014215)	ENSDLAG00005014141	ENSDLAG00005014119	RB24B (ENSDLAG00005034430)	RAE1 (ENSDLAG00005014085)	BMP7B (ENSDLAG00005034944)	ENSDLAG00005014053	ENSDLAG00005014027	LSM14B (ENSDLAG00005013965) #21	ENSDLAG00005013961 #22	CDH4 (ENSDLAG00005011657) #23	ENSDLAG00005029634	ogfr2 (ENSDLAG00005026653)	ENSDLAG00005011550	ZMYND8 (ENSDLAG00005008873)	ENSDLAG00005008706	ID1 (ENSDLAG00005033925)	sulf2a (ENSDLAG00005007742)	arhgap46a (ENSDLAG00005007687)	ENSDLAG00005007665	ndrg3a (ENSDLAG00005006458)	trpc4apa (ENSDLAG00005005884)	myh7ba (ENSDLAG00005005626)	SNAI (ENSDLAG00005033824)	ENSDLAG00005005462
Gilthead seabream	MODERN SPECIES	20	SEC61A1 (ENSSAUG00010000321)	ENSSAUG00010000364	chchd4a (ENSSAUG00010000373)	ENSSAUG00010000378	DNAH1 (ENSSAUG00010000485)	mapkapk3 (ENSSAUG00010000892)	pfkfb4a (ENSSAUG00010000909)	ARPC4 (ENSSAUG00010000982)	tada3l (ENSSAUG00010000984)	RBM38 (ENSSAUG00010000986)	rae1 (ENSSAUG00010000992)	bmp7a (ENSSAUG00010001062)	ENSSAUG00010001064	ENSSAUG00010001065	LSM14B (ENSSAUG00010001066) #21	TAF4 (ENSSAUG00010001070) #22	cdh4 (ENSSAUG00010001139) #23	ENSSAUG00010006592	ogfr2 (ENSSAUG00010006601)	ENSSAUG00010006604	ZMYND8 (ENSSAUG00010006668)	ENSSAUG00010010183	id1 (ENSSAUG00010010185)	sulf2a (ENSSAUG00010010207)	arhgap46a (ENSSAUG00010010993)	PHF20 (ENSSAUG00010010994)	ndrg3a (ENSSAUG00010011005)	ENSSAUG00010012035	trpc4apa (ENSSAUG00010012056)	myh7ba (ENSSAUG00010013596)	snai1a (ENSSAUG00010013621)
Tetraodontidae	ANCESTRAL SPECIES	1	ENSGT00390000002873	ENSGT00940000164201.c.a	ENSGT00940000156310.p	ENSGT00390000003721.d.a.g.a	ENSGT00390000013132.b.a	ENSGT00940000166464	ENSGT00940000154089.a.c	ENSGT00950000182835.c.d.c.a	ENSGT00390000016233.e.a	ENSGT00390000008947	ENSGT00940000158489.a.b	ENSGT00950000183091.B.b	ENSGT00940000156490.b.b	ENSGT00940000165182.d	ENSGT00940000156010.eb #21	ENSGT00390000011620.a.a.b.e #22	ENSGT00940000158073.b #23	ENSGT00940000161997.b	ENSGT00940000156785	ENSGT00940000155637	ENSGT00390000006330.a.b	ENSGT00670000099474	ENSGT00950000183038.a.b.a.g	ENSGT00940000157144.c.a	ENSGT01000000214440.B	ENSGT00940000164642	ENSGT00940000155330.c	ENSGT00950000182908.B.c.a	ENSGT00530000063255.A	ENSGT00940000155569.a.a.e #32	ENSGT00390000001799 #33
Fugu	MODERN SPECIES	10	thoc7 (ENSTRUG00000029292)	mxa (ENSTRUG00000009739)	ip6k2a (ENSTRUG00000020006)	SEC61A1 (ENSTRUG00000010155)	chchd4a (ENSTRUG00000025793)	ENSTRUG00000010374	mapkapk3 (ENSTRUG00000010458)	pfkfb4a (ENSTRUG00000022003)	arpc4 (ENSTRUG00000010785)	tada3l (ENSTRUG00000010855)	RBM38 (ENSTRUG00000019869)	rae1 (ENSTRUG00000011042)	bmp7a (ENSTRUG00000011215)	ENSTRUG00000028328	LSM14B (ENSTRUG00000011354) #21	TAF4 (ENSTRUG00000011488) #22	cdh4 (ENSTRUG00000011567) #23	ENSTRUG00000012201	ENSTRUG00000012227	ENSTRUG00000020708	nab2 (ENSTRUG00000012284)	ENSTRUG00000024271	NR4A1 (ENSTRUG00000012317)	DGKA (ENSTRUG00000012452)	STX16 (ENSTRUG00000024770)	cnpy2 (ENSTRUG00000012744)	slc11a2 (ENSTRUG00000012806)	ANKRD52 (ENSTRUG00000013030)	npepl1 (ENSTRUG00000013153)	ctsz (ENSTRUG00000013236) #32	nelfcd (ENSTRUG00000020959) #33
Tetraodon	MODERN SPECIES	2	ATXN7 (ENSTNIG00000011140)	thoc7 (ENSTNIG00000006681)	MX1 (ENSTNIG00000006682)	ip6k2a (ENSTNIG00000007100)	SEC61A1 (ENSTNIG00000007099)	chchd4a (ENSTNIG00000007098)	mapkapk3 (ENSTNIG00000007097)	pfkfb4a (ENSTNIG00000007096)	ARPC4 (ENSTNIG00000007095)	tada3l (ENSTNIG00000007094)	RBM38 (ENSTNIG00000007093)	rae1 (ENSTNIG00000007092)	bmp7a (ENSTNIG00000007091)	ENSTNIG00000007090	LSM14B (ENSTNIG00000002445) #21	TAF4 (ENSTNIG00000007089) #22	cdh4 (ENSTNIG00000007088) #23	ENSTNIG00000007087	ENSTNIG00000007086	ENSTNIG00000007085	nab2 (ENSTNIG00000007084)	NR4A1 (ENSTNIG00000007083)	DGKA (ENSTNIG00000007082)	STX16 (ENSTNIG00000007081)	cnpy2 (ENSTNIG00000007080)	slc11a2 (ENSTNIG00000007079)	ANKRD52 (ENSTNIG00000007078)	npepl1 (ENSTNIG00000001641)	npepl1 (ENSTNIG00000007077)	ctsz (ENSTNIG00000007076) #32	nelfcd (ENSTNIG00000007075) #33
Percomorphaceae_D	ANCESTRAL SPECIES	3	ENSGT00390000013132.b.a	ENSGT00940000166464	ENSGT00940000174829	ENSGT00940000154791	ENSGT00940000154089.a.c	ENSGT00950000182835.c.d.c.a	ENSGT00390000016233.e.a	ENSGT00390000008947	ENSGT00940000158489.a.b	ENSGT00950000183091.B.b	ENSGT00940000156490.b.b	ENSGT00390000005939.a.b.b	ENSGT00940000165182.d	ENSGT00940000155218.A.c	ENSGT00940000156010.eb #21	ENSGT00390000011620.a.a.b.e #22	ENSGT00940000158073.b #23	ENSGT00940000160902.c.a	ENSGT00390000018730.A.f	ENSGT01100000265393	ENSGT00940000154897.r	ENSGT00950000183021.a.b.d	ENSGT00940000161109	ENSGT00940000166926	ENSGT00940000164502.a.b	ENSGT00940000156477.d.a	ENSGT00950000182872.f.a.a.a.b	ENSGT00940000160331	ENSGT00390000018330	ENSGT00940000160318.c.b	ENSGT00940000154681.b.d
Anabantaria	ANCESTRAL SPECIES		ENSGT00390000003721.d.a.g.a	ENSGT00390000013132.b.a	ENSGT00940000166464	ENSGT00940000154791	ENSGT00940000154089.a.c	ENSGT00950000182835.c.d.c.a	ENSGT00390000016233.e.a	ENSGT00390000008947	ENSGT00940000158489.a.b	ENSGT00950000183091.B.b	ENSGT00940000156490.b.b	ENSGT00390000005939.a.b.b	ENSGT00940000165182.d	ENSGT00940000155218.A.c	ENSGT00940000156010.eb #21	ENSGT00390000011620.a.a.b.e #22	ENSGT00940000158073.b #23	ENSGT00940000160902.c.a	ENSGT00390000018730.A.f	ENSGT00940000154897.r	ENSGT00950000183021.a.b.d	ENSGT00940000161109	ENSGT00940000166926	ENSGT00940000164502.a.b	ENSGT00940000156477.d.a	ENSGT00950000182872.f.a.a.a.b	ENSGT00940000160331	ENSGT00390000018330	ENSGT00940000160318.c.b	ENSGT00940000154681.b.d	ENSGT00980000199461
Anabantoidei	ANCESTRAL SPECIES	1	ENSGT00390000003721.d.a.g.a	ENSGT00390000013132.b.a	ENSGT00940000166464	ENSGT00940000154791	ENSGT00940000154089.a.c	ENSGT00950000182835.c.d.c.a	ENSGT00390000016233.e.a	ENSGT00390000008947	ENSGT00940000158489.a.b	ENSGT00950000183091.B.b	ENSGT00940000156490.b.b	ENSGT00390000005939.a.b.b	ENSGT00940000165182.d	ENSGT00940000155218.A.c	ENSGT00940000156010.eb #21	ENSGT00390000011620.a.a.b.e #22	ENSGT00940000158073.b #23	ENSGT00940000160902.c.a	ENSGT00390000018730.A.f	ENSGT00940000154897.r	ENSGT00950000183021.a.b.d	ENSGT00940000161109	ENSGT00940000166926	ENSGT00940000164502.a.b	ENSGT00940000156477.d.a	ENSGT00950000182872.f.a.a.a.b	ENSGT00940000160331	ENSGT00390000018330	ENSGT00940000160318.c.b	ENSGT00940000154681.b.d	ENSGT00940000156917.b
Climbing perch	MODERN SPECIES	18	ENSATEG00000017104	ENSATEG00000017072	ENSATEG00000017023	chchd4a (ENSATEG00000025788)	ENSATEG00000016990	pfkfb4a (ENSATEG00000016787)	ENSATEG00000016840	ENSATEG00000016724	RBM38 (ENSATEG00000016710)	RAE1 (ENSATEG00000016689)	bmp7a (ENSATEG00000016678)	ENSATEG00000027080	ENSATEG00000016649	ENSATEG00000016618	LSM14B (ENSATEG00000029061) #21	ENSATEG00000028405 #22	CDH4 (ENSATEG00000016519) #23	ENSATEG00000016484	ogfr2 (ENSATEG00000016414)	ENSATEG00000028433	ENSATEG00000016340	ENSATEG00000016287	id1 (ENSATEG00000027640)	sulf2a (ENSATEG00000016107)	arhgap46a (ENSATEG00000016027)	ENSATEG00000015958	ndrg3a (ENSATEG00000015891)	trpc4apa (ENSATEG00000015800)	myh7ba (ENSATEG00000015668)	snai1a (ENSATEG00000015639)	ENSATEG00000025418
Siamese fighting fish	MODERN SPECIES	16	SEC61A1 (ENSBSLG00000008963)	chchd4a (ENSBSLG00000009054)	ENSBSLG00000009070	DNAH1 (ENSBSLG00000009294)	ENSBSLG00000012877	mapkapk3 (ENSBSLG00000012888)	pfkfb4a (ENSBSLG00000013352)	ARPC4 (ENSBSLG00000013860)	tada3l (ENSBSLG00000013887)	ENSBSLG00000013906	rae1 (ENSBSLG00000013920)	bmp7a (ENSBSLG00000013978)	ENSBSLG00000013991	ENSBSLG00000013993	LSM14B (ENSBSLG00000014018) #21	TAF4 (ENSBSLG00000014026) #22	cdh4 (ENSBSLG00000014283) #23	ENSBSLG00000016388	ENSBSLG00000016576	ogfr2 (ENSBSLG00000016625)	ENSBSLG00000016672	ENSBSLG00000016705	ZMYND8 (ENSBSLG00000017118)	NCOA3 (ENSBSLG00000021022)	id1 (ENSBSLG00000021125)	sulf2a (ENSBSLG00000021353)	arhgap46a (ENSBSLG00000022463)	PHF20 (ENSBSLG00000022500)	ndrg3a (ENSBSLG00000022533)	ENSBSLG00000022660	trpc4apa (ENSBSLG00000022759)
Zig-zag eel	MODERN SPECIES	19	ENSMAMG00000020358	ENSMAMG00000020367	chchd4a (ENSMAMG00000024262)	ENSMAMG00000020386	ENSMAMG00000020411	mapkapk3 (ENSMAMG00000020448)	pfkfb4a (ENSMAMG00000020455)	ENSMAMG00000020477	ENSMAMG00000020485	RBM38 (ENSMAMG00000026027)	RAE1 (ENSMAMG00000020502)	BMP7 (ENSMAMG00000020511)	ENSMAMG00000026183	ENSMAMG00000020528	LSM14B (ENSMAMG00000020539) #21	ENSMAMG00000020545 #22	CDH4 (ENSMAMG00000020558) #23	ENSMAMG00000020729	ogfr2 (ENSMAMG00000028481)	ENSMAMG00000027716	ENSMAMG00000020799	ENSMAMG00000020835	ENSMAMG00000027125	sulf2a (ENSMAMG00000020845)	arhgap46a (ENSMAMG00000020882)	ENSMAMG00000020899	ndrg3a (ENSMAMG00000020915)	trpc4apa (ENSMAMG00000020928)	myh7ba (ENSMAMG00000020947)	snai1a (ENSMAMG00000020994)	ENSMAMG00000021002
Carangaria	ANCESTRAL SPECIES	3	ENSGT00390000013132.b.a	ENSGT00940000166464	ENSGT00940000174829	ENSGT00940000154791	ENSGT00940000154089.a.c	ENSGT00950000182835.c.d.c.a	ENSGT00390000016233.e.a	ENSGT00390000008947	ENSGT00940000158489.a.b	ENSGT00950000183091.B.b	ENSGT00940000156490.b.b	ENSGT00390000005939.a.b.b	ENSGT00940000165182.d	ENSGT00940000155218.A.c	ENSGT00940000156010.eb #21	ENSGT00390000011620.a.a.b.e #22	ENSGT00940000158073.b #23	ENSGT00940000160902.c.a	ENSGT00390000018730.A.f	ENSGT01100000265393	ENSGT00940000154897.r	ENSGT00950000183021.a.b.d	ENSGT00940000161109	ENSGT00940000166926	ENSGT00940000164502.a.b	ENSGT00940000156477.d.a	ENSGT00950000182872.f.a.a.a.b	ENSGT00940000160331	ENSGT00390000018330	ENSGT00940000160318.c.b	ENSGT00940000154681.b.d
Pleuronectoidei	ANCESTRAL SPECIES	4	ENSGT00390000003721.d.a.g.a	ENSGT00390000013132.b.a	ENSGT00940000166464	ENSGT00940000154791	ENSGT00940000154089.a.c	ENSGT00950000182835.c.d.c.a	ENSGT00390000016233.e.a	ENSGT00390000008947	ENSGT00940000158489.a.b	ENSGT00950000183091.B.b	ENSGT00940000156490.b.b	ENSGT00390000005939.a.b.b	ENSGT00940000165182.d	ENSGT00940000155218.A.c	ENSGT00940000156010.eb #21	ENSGT00390000011620.a.a.b.e #22	ENSGT00940000158073.b #23	ENSGT00940000160902.c.a	ENSGT00390000018730.A.f	ENSGT01100000265393	ENSGT00940000155532	ENSGT00940000154897.r	ENSGT00950000183021.a.b.d	ENSGT00940000161109	ENSGT00940000166926	ENSGT00940000164502.a.b	ENSGT00940000156477.d.a	ENSGT00950000182872.f.a.a.a.b	ENSGT00940000160331	ENSGT00390000018330	ENSGT00940000160318.c.b
Turbot	MODERN SPECIES	18	ENSSMAG00000011753	ENSSMAG00000011790	chchd4a (ENSSMAG00000011850)	ENSSMAG00000011854	ENSSMAG00000011918	pfkfb4a (ENSSMAG00000012091)	ENSSMAG00000012173	ENSSMAG00000012632	RBM38 (ENSSMAG00000012663)	RAE1 (ENSSMAG00000012667)	bmp7a (ENSSMAG00000012679)	ENSSMAG00000031066	ENSSMAG00000012701	ENSSMAG00000012715	LSM14B (ENSSMAG00000012725) #21	ENSSMAG00000012736 #22	CDH4 (ENSSMAG00000012762) #23	ENSSMAG00000012838	ogfr2 (ENSSMAG00000012850)	ENSSMAG00000012877	ENSSMAG00000012892	ENSSMAG00000012925	ENSSMAG00000013056	id1 (ENSSMAG00000013135)	sulf2a (ENSSMAG00000013143)	arhgap46a (ENSSMAG00000013248)	ENSSMAG00000037386	ENSSMAG00000013338	ndrg3a (ENSSMAG00000013395)	ENSSMAG00000027630	trpc4apa (ENSSMAG00000013512)
Tongue sole	MODERN SPECIES	2	foxp4 (ENSCSEG00000004532)	ENSCSEG00000004559	tfeb (ENSCSEG00000004566)	tmem183a (ENSCSEG00000004576)	ppfia4 (ENSCSEG00000004589)	myog (ENSCSEG00000004665)	mdm4 (ENSCSEG00000004669)	sort1a (ENSCSEG00000004676)	psma5 (ENSCSEG00000004690)	RBM38 (ENSCSEG00000004701)	rae1 (ENSCSEG00000004706)	bmp7a (ENSCSEG00000004712)	ENSCSEG00000004715	ENSCSEG00000004718	LSM14B (ENSCSEG00000004722) #21	ENSCSEG00000004725 #22	ENSCSEG00000004737 #23	ENSCSEG00000004739	chchd6b (ENSCSEG00000004751)	tpra1 (ENSCSEG00000004756)	ENSCSEG00000004759	LPIN3 (ENSCSEG00000004764)	myl9a (ENSCSEG00000004790)	ENSCSEG00000004794	ENSCSEG00000004799	ENSCSEG00000004807	quo (ENSCSEG00000004824)	tgm2b (ENSCSEG00000004838)	ENSCSEG00000004844	krt4 (ENSCSEG00000004846)	ENSCSEG00000004850
Carangaria_A	ANCESTRAL SPECIES	7	ENSGT00390000013132.b.a	ENSGT00940000166464	ENSGT00940000174829	ENSGT00940000154791	ENSGT00940000154089.a.c	ENSGT00950000182835.c.d.c.a	ENSGT00390000016233.e.a	ENSGT00390000008947	ENSGT00940000158489.a.b	ENSGT00950000183091.B.b	ENSGT00940000156490.b.b	ENSGT00390000005939.a.b.b	ENSGT00940000165182.d	ENSGT00940000155218.A.c	ENSGT00940000156010.eb #21	ENSGT00390000011620.a.a.b.e #22	ENSGT00940000158073.b #23	ENSGT00940000160902.c.a	ENSGT00390000018730.A.f	ENSGT00940000154897.r	ENSGT00950000183021.a.b.d	ENSGT00940000161109	ENSGT00940000166926	ENSGT00940000164502.a.b	ENSGT00940000156477.d.a	ENSGT00950000182872.f.a.a.a.b	ENSGT00940000160331	ENSGT00390000018330	ENSGT00940000160318.c.b	ENSGT00940000154681.b.d	ENSGT00940000156917.b
Seriola	ANCESTRAL SPECIES	10	ENSGT00390000003721.d.a.g.a	ENSGT00390000013132.b.a	ENSGT00940000166464	ENSGT00940000174829	ENSGT00940000154791	ENSGT00940000154089.a.c	ENSGT00950000182835.c.d.c.a	ENSGT00390000016233.e.a	ENSGT00390000008947	ENSGT00940000158489.a.b	ENSGT00950000183091.B.b	ENSGT00940000156490.b.b	ENSGT00940000165182.d	ENSGT00940000155218.A.c	ENSGT00940000156010.eb #21	ENSGT00390000011620.a.a.b.e #22	ENSGT00940000158073.b #23	ENSGT00940000160902.c.a	ENSGT00390000018730.A.f	ENSGT00940000154897.r	ENSGT00950000183021.a.b.d	ENSGT00940000161109	ENSGT00940000166926	ENSGT00940000164502.a.b	ENSGT00940000156477.d.a	ENSGT00950000182872.f.a.a.a.b	ENSGT00940000160331	ENSGT00390000018330	ENSGT00940000160318.c.b	ENSGT00940000154681.b.d	ENSGT00940000156917.b
Greater amberjack	MODERN SPECIES	37	ip6k2a (ENSSDUG00000021556)	SEC61A1 (ENSSDUG00000021526)	chchd4a (ENSSDUG00000021516)	ENSSDUG00000021490	DNAH1 (ENSSDUG00000021400)	mapkapk3 (ENSSDUG00000021242)	pfkfb4a (ENSSDUG00000021138)	ARPC4 (ENSSDUG00000021114)	tada3l (ENSSDUG00000021092)	RBM38 (ENSSDUG00000021082)	rae1 (ENSSDUG00000021046)	bmp7a (ENSSDUG00000021030)	ENSSDUG00000021025	ENSSDUG00000020987	LSM14B (ENSSDUG00000020977) #21	ENSSDUG00000020966 #22	cdh4 (ENSSDUG00000020918) #23	ENSSDUG00000020910	ogfr2 (ENSSDUG00000020893)	ENSSDUG00000020864	ZMYND8 (ENSSDUG00000020647)	NCOA3 (ENSSDUG00000020589)	id1 (ENSSDUG00000020580)	sulf2a (ENSSDUG00000020359)	arhgap46a (ENSSDUG00000020279)	PHF20 (ENSSDUG00000020220)	ndrg3a (ENSSDUG00000020098)	ENSSDUG00000020064	trpc4apa (ENSSDUG00000020023)	myh7ba (ENSSDUG00000019946)	snai1a (ENSSDUG00000019933)
Yellowtail amberjack	MODERN SPECIES	3158	ENSSLDG00000012118	ENSSLDG00000012100	ENSSLDG00000012047	ENSSLDG00000012027	ENSSLDG00000011978	mapkapk3 (ENSSLDG00000011948)	pfkfb4a (ENSSLDG00000011879)	arpc4 (ENSSLDG00000011829)	tada3l (ENSSLDG00000011797)	RBM38 (ENSSLDG00000011778)	rae1 (ENSSLDG00000011747)	bmp7a (ENSSLDG00000011732)	ENSSLDG00000011714	ENSSLDG00000011706 #21	ENSSLDG00000011678	TAF4 (ENSSLDG00000011644) #22	ENSSLDG00000011622	cdh4 (ENSSLDG00000011438) #23
Barramundi perch	MODERN SPECIES	93	SEC61A1 (ENSLCAG00010021890)	chchd4a (ENSLCAG00010021865)	ENSLCAG00010021861	DNAH1 (ENSLCAG00010021659)	mapkapk3 (ENSLCAG00010021600)	pfkfb4a (ENSLCAG00010021278)	arpc4 (ENSLCAG00010021203)	tada3l (ENSLCAG00010021200)	RBM38 (ENSLCAG00010021196)	rae1 (ENSLCAG00010021188)	bmp7a (ENSLCAG00010021187)	ENSLCAG00010021186	ENSLCAG00010021185	ENSLCAG00010021184	LSM14B (ENSLCAG00010021182) #21	ENSLCAG00010021180 #22	cdh4 (ENSLCAG00010021125) #23	ENSLCAG00010021094	ENSLCAG00010021083	ZMYND8 (ENSLCAG00010020497)	NCOA3 (ENSLCAG00010020363)	id1 (ENSLCAG00010020359)	sulf2a (ENSLCAG00010020064)	arhgap46a (ENSLCAG00010019930)	ENSLCAG00010019926	ENSLCAG00010019917	ndrg3a (ENSLCAG00010019837)	ENSLCAG00010019825	trpc4apa (ENSLCAG00010019718)	myh7ba (ENSLCAG00010019690)	snai1a (ENSLCAG00010019688)
Pinecone sodierfish	MODERN SPECIES	19	chchd4a (ENSMMDG00005018566)	ENSMMDG00005018568	ENSMMDG00005018572	ENSMMDG00005018574	ENSMMDG00005018582	mapkapk3 (ENSMMDG00005018617)	pfkfb4a (ENSMMDG00005018831)	ARPC4 (ENSMMDG00005018913)	tada3l (ENSMMDG00005018915)	ENSMMDG00005018918	rae1 (ENSMMDG00005018920)	bmp7a (ENSMMDG00005018945)	ENSMMDG00005019667	ENSMMDG00005019670	LSM14B (ENSMMDG00005019672) #21	ENSMMDG00005019674 #22	cdh4 (ENSMMDG00005019715) #23	ENSMMDG00005020180	ENSMMDG00005020181	ogfr2 (ENSMMDG00005020184)	ENSMMDG00005020192	ZMYND8 (ENSMMDG00005020267)	NCOA3 (ENSMMDG00005021679)	id1 (ENSMMDG00005021683)	sulf2a (ENSMMDG00005021725)	arhgap46a (ENSMMDG00005004002)	PHF20 (ENSMMDG00005004009)	ndrg3a (ENSMMDG00005004130)	ENSMMDG00005005982	trpc4apa (ENSMMDG00005006010)	myh7ba (ENSMMDG00005006989)
Cod	MODERN SPECIES	4	ENSGMOG00000036049	ENSGMOG00000019276	ENSGMOG00000019270	ENSGMOG00000010010	ENSGMOG00000027022	ENSGMOG00000034646	ENSGMOG00000009988	ENSGMOG00000029494	RBM38 (ENSGMOG00000029207)	RAE1 (ENSGMOG00000016670)	bmp7a (ENSGMOG00000016691)	ENSGMOG00000036693	ENSGMOG00000032653	ENSGMOG00000016727	LSM14B (ENSGMOG00000017115) #21	ENSGMOG00000017138 #22	CDH4 (ENSGMOG00000017191) #23	ENSGMOG00000025076	ogfr2 (ENSGMOG00000017268)	ENSGMOG00000022276	ENSGMOG00000027426	ENSGMOG00000022915	ENSGMOG00000017376	ENSGMOG00000017433	id1 (ENSGMOG00000037179)	sulf2a (ENSGMOG00000017504)	arhgap46a (ENSGMOG00000017547)	ENSGMOG00000017577	ENSGMOG00000027296	ndrg3a (ENSGMOG00000017636)	ENSGMOG00000017663
Otomorpha	ANCESTRAL SPECIES	142	ENSGT00510000047967	ENSGT00390000011228.b.a.e.a	ENSGT00390000014429.a	ENSGT00940000156378.a.a	ENSGT00940000157448	ENSGT00390000018321	ENSGT00940000159273	ENSGT00940000158320	ENSGT00390000003017.c.a	ENSGT00550000074884	ENSGT00940000165342.b	ENSGT00940000156490.b.b	ENSGT00390000005939.a.b.b	ENSGT00940000165182.d	ENSGT00940000155218.A.c	ENSGT00390000011620.a.a.b.e #22
Clupeiformes	ANCESTRAL SPECIES	76	ENSGT00390000016901.a	ENSGT00940000165239.a	ENSGT00390000011082	ENSGT00940000157127.b	ENSGT00940000155125.a.b	ENSGT00940000157448	ENSGT00390000018321	ENSGT00940000159273	ENSGT00940000158320	ENSGT00390000003017.c.a	ENSGT00550000074884	ENSGT00940000165342.b	ENSGT00940000156490.b.b	ENSGT00390000005939.a.b.b	ENSGT00940000165182.d	ENSGT00390000011620.a.a.b.e #22	ENSGT00940000158073.b #23	ENSGT00940000160902.c.a	ENSGT00390000018730.A.f	ENSGT00940000155532.yd.a	ENSGT00940000155532.yd.b	ENSGT00940000163561	ENSGT00390000008330	ENSGT00940000157312	ENSGT00940000156915.f.b	ENSGT00940000156308	ENSGT00940000156047.a	ENSGT00940000158523.c.b	ENSGT00940000164549.a.b	ENSGT00940000160218	ENSGT00940000158148
Atlantic herring	MODERN SPECIES	21	zgc:77375 (ENSCHAG00000022429)	isy1 (ENSCHAG00000022451)	BRK1 (ENSCHAG00000022547)	slc38a3a (ENSCHAG00000022606)	gnai2a (ENSCHAG00000023506)	ENSCHAG00000023548	nek4 (ENSCHAG00000023572)	spcs1 (ENSCHAG00000023587)	glt8d1 (ENSCHAG00000023598)	gnl3 (ENSCHAG00000023603)	PBRM1 (ENSCHAG00000023670)	cse1l (ENSCHAG00000025206)	ENSCHAG00000025328	bmp7a (ENSCHAG00000025373)	ENSCHAG00000025524	ENSCHAG00000025527 #22	cdh4 (ENSCHAG00000025571) #23	ENSCHAG00000026215	ENSCHAG00000026218	ENSCHAG00000026219	ENSCHAG00000026223	ENSCHAG00000026226	ENSCHAG00000026231	acad9 (ENSCHAG00000026242)	IQSEC1 (ENSCHAG00000026309)	hdac11 (ENSCHAG00000026731)	FBLN2 (ENSCHAG00000026752)	wnt7aa (ENSCHAG00000026868)	ENSCHAG00000026871	ptpdc1a (ENSCHAG00000026875)	barx1 (ENSCHAG00000026876)
Denticle herring	MODERN SPECIES	3	rab43 (ENSDCDG00000017106)	zgc:77375 (ENSDCDG00000017107)	isy1 (ENSDCDG00000017109)	ENSDCDG00000017113	slc38a3a (ENSDCDG00000017180)	gnai2a (ENSDCDG00000021758)	nek4 (ENSDCDG00000021767)	spcs1 (ENSDCDG00000021776)	glt8d1 (ENSDCDG00000021782)	gnl3 (ENSDCDG00000021801)	PBRM1 (ENSDCDG00000021931)	cse1l (ENSDCDG00000025543)	bmp7a (ENSDCDG00000025594)	ENSDCDG00000025601	ENSDCDG00000025605	ENSDCDG00000025615 #22	cdh4 (ENSDCDG00000025716) #23	ogfr2 (ENSDCDG00000027183)	ENSDCDG00000027185	ENSDCDG00000027186	ENSDCDG00000027187	ENSDCDG00000027189	acad9 (ENSDCDG00000027197)	IQSEC1 (ENSDCDG00000027239)	hdac11 (ENSDCDG00000028598)	FBLN2 (ENSDCDG00000028608)	wnt7aa (ENSDCDG00000028626)	ptpdc1a (ENSDCDG00000028640)	barx1 (ENSDCDG00000028860)	phf2 (ENSDCDG00000028892)	FAM120A (ENSDCDG00000029454)
Otophysi	ANCESTRAL SPECIES	211	ENSGT00390000003017.c.a	ENSGT00940000158320	ENSGT00940000159273	ENSGT00390000018321	ENSGT00940000157448	ENSGT00940000156378.a.a	ENSGT00390000014429.a	ENSGT00390000011228.b.a.e.a	ENSGT00510000047967	ENSGT00940000155048.d.a.k	ENSGT00550000074884	ENSGT00940000156490.b.b	ENSGT00390000005939.a.b.b	ENSGT00940000165182.d	ENSGT00940000155218.A.c	ENSGT00390000011620.a.a.b.e #22	ENSGT00940000158073.b #23	ENSGT00940000160902.c.a	ENSGT00390000018730.A.f	ENSGT00940000155532	ENSGT00940000154897.r	ENSGT00950000183021.a.b.d	ENSGT00940000161109	ENSGT00940000156478
Characiphysae	ANCESTRAL SPECIES	29	ENSGT00390000009630	ENSGT00390000003017.c.a	ENSGT00940000158320	ENSGT00940000159273	ENSGT00390000018321	ENSGT00940000157448	ENSGT00940000156378.a.a	ENSGT00390000014429.a	ENSGT00390000011228.b.a.e.a	ENSGT00510000047967	ENSGT00940000155048.d.a.k	ENSGT00550000074884	ENSGT00940000156490.b.b	ENSGT00390000005939.a.b.b	ENSGT00940000165182.d	ENSGT00390000011620.a.a.b.e #22	ENSGT00940000158073.b #23	ENSGT00940000160902.c.a	ENSGT00390000018730.A.f	ENSGT00940000155532	ENSGT00940000154897.r	ENSGT00950000183021.a.b.d	ENSGT00940000161109.s.a	ENSGT00950000182835.d.a.k.a	ENSGT00390000011648.b	ENSGT00940000157392.o.b	ENSGT00530000063868.a.b	ENSGT00940000158436	ENSGT00940000155241.d	ENSGT00730000111360.b	ENSGT01030000234812.a
Channel catfish	MODERN SPECIES	13	itih3 (ENSIPUG00000023620)	GATA2 (ENSIPUG00000023627)	rpn1 (ENSIPUG00000023633)	pbrm1 (ENSIPUG00000023639)	gnl3 (ENSIPUG00000023677)	glt8d1 (ENSIPUG00000023689)	spcs1 (ENSIPUG00000023691)	CAMK1 (ENSIPUG00000023697)	ccdc3b (ENSIPUG00000023706)	si:ch211-236d3.4 (ENSIPUG00000023707)	fhit (ENSIPUG00000023729)	ptprg (ENSIPUG00000023735)	cse1l (ENSIPUG00000023752)	Bmp7 (ENSIPUG00000023773)	ENSIPUG00000023776	taf4 (ENSIPUG00000023780) #22	cdh4 (ENSIPUG00000023783) #23	ENSIPUG00000023794	ENSIPUG00000023797	ENSIPUG00000023802	ENSIPUG00000023813	ENSIPUG00000023814	dido1 (ENSIPUG00000023816)	ENSIPUG00000023819	ZMYND8 (ENSIPUG00000023824)	NCOA3 (ENSIPUG00000023848)	id1 (ENSIPUG00000023852)	PFKFB2 (ENSIPUG00000023854)	phtf1 (ENSIPUG00000023863)	cishb (ENSIPUG00000023872)	twf2b (ENSIPUG00000023875)
Characiphysae_b	ANCESTRAL SPECIES	26	ENSGT00390000009630	ENSGT00390000003017.c.a	ENSGT00940000158320	ENSGT00940000159273	ENSGT00390000018321	ENSGT00940000157448	ENSGT00940000156378.a.a	ENSGT00390000014429.a	ENSGT00390000011228.b.a.e.a	ENSGT00510000047967	ENSGT00940000155048.d.a.k	ENSGT00550000074884	ENSGT00940000156490.b.b	ENSGT00390000005939.a.b.b	ENSGT00940000165182.d	ENSGT00390000011620.a.a.b.e #22	ENSGT00940000158073.b #23	ENSGT00940000160902.c.a	ENSGT00390000018730.A.f	ENSGT00940000155532	ENSGT00940000154897.r	ENSGT00950000183021.a.b.d	ENSGT00940000161109.s.a	ENSGT00950000182835.d.a.k.a	ENSGT00390000011648.b	ENSGT00940000157392.o.b	ENSGT00530000063868.a.b	ENSGT00940000158436	ENSGT00940000155241.d	ENSGT00730000111360.b	ENSGT01030000234812.a
Characoidei	ANCESTRAL SPECIES	15	ENSGT00390000009630	ENSGT00390000003017.c.a	ENSGT00940000158320	ENSGT00940000159273	ENSGT00390000018321	ENSGT00940000157448	ENSGT00940000156378.a.a	ENSGT00390000014429.a	ENSGT00390000011228.b.a.e.a	ENSGT00510000047967	ENSGT00940000155048.d.a.k	ENSGT00550000074884	ENSGT00940000156490.b.b	ENSGT00390000005939.a.b.b	ENSGT00940000165182.d	ENSGT00390000011620.a.a.b.e #22	ENSGT00940000158073.b #23	ENSGT00940000160902.c.a	ENSGT00390000018730.A.f	ENSGT00940000154897.r	ENSGT00950000183021.a.b.d	ENSGT00940000161109.s.a	ENSGT00950000182835.d.a.k.a	ENSGT00390000011648.b	ENSGT00940000157392.o.b	ENSGT00530000063868.a.b	ENSGT00940000158436	ENSGT00940000155241.d	ENSGT00730000111360.b	ENSGT01030000234812.a	ENSGT00940000155189.pb.a
Red-bellied piranha	MODERN SPECIES	6	PBRM1 (ENSPNAG00000013202)	gnl3 (ENSPNAG00000013096)	glt8d1 (ENSPNAG00000002547)	spcs1 (ENSPNAG00000013052)	nek4 (ENSPNAG00000013047)	CAMK1 (ENSPNAG00000002527)	ccdc3b (ENSPNAG00000012983)	FAM107A (ENSPNAG00000012967)	fhit (ENSPNAG00000002483)	ENSPNAG00000005241	ptprga (ENSPNAG00000012931)	cse1l (ENSPNAG00000012903)	bmp7a (ENSPNAG00000002424)	ENSPNAG00000002414	ENSPNAG00000012810	TAF4 (ENSPNAG00000012794) #22	cdh4 (ENSPNAG00000012744) #23	ENSPNAG00000002348	ENSPNAG00000002345	ENSPNAG00000012633	ENSPNAG00000002324	ENSPNAG00000002320	ENSPNAG00000012597	ZMYND8 (ENSPNAG00000002300)	NCOA3 (ENSPNAG00000012470)	id1 (ENSPNAG00000002251)	PFKFB2 (ENSPNAG00000012439)	phtf1 (ENSPNAG00000012360)	cishb (ENSPNAG00000002191)	twf2b (ENSPNAG00000012303)	rpusd4 (ENSPNAG00000012264)
Mexicana tetra	MODERN SPECIES	14	glt8d1 (ENSAMXG00000042559)	spcs1 (ENSAMXG00000017538)	nek4 (ENSAMXG00000031938)	CAMK1 (ENSAMXG00000017559)	zgc:194209 (ENSAMXG00000043132)	ENSAMXG00000042647	ccdc3b (ENSAMXG00000030925)	ENSAMXG00000042063	ENSAMXG00000037249	fhit (ENSAMXG00000016351)	ptprga (ENSAMXG00000016372)	cse1l (ENSAMXG00000016416)	bmp7a (ENSAMXG00000037549)	ENSAMXG00000041468	ENSAMXG00000043601	ENSAMXG00000016453 #22	cdh4 (ENSAMXG00000016470) #23	ENSAMXG00000030049	ENSAMXG00000029646	dido1 (ENSAMXG00000006865)	ZMYND8 (ENSAMXG00000006882)	NCOA3 (ENSAMXG00000006902)	id1 (ENSAMXG00000030460)	PFKFB2 (ENSAMXG00000032440)	phtf1 (ENSAMXG00000006946)	cishb (ENSAMXG00000041177)	twf2b (ENSAMXG00000006961)	rpusd4 (ENSAMXG00000031479)	qrich1 (ENSAMXG00000006971)	ENSAMXG00000032492	ENSAMXG00000033226
Electric eel	MODERN SPECIES	454														bmp7a (ENSEEEG00000011144)	ENSEEEG00000011317	ENSEEEG00000011319 #22	cdh4 (ENSEEEG00000011323) #23	ENSEEEG00000011328	ENSEEEG00000011332	ENSEEEG00000011335	ZMYND8 (ENSEEEG00000011372)
Cyprinoidei	ANCESTRAL SPECIES	23	ENSGT00940000159691	ENSGT00940000160187	ENSGT00940000158700	ENSGT00390000005106	ENSGT00950000182824.a.a.b.b	ENSGT00950000182937.B.a	ENSGT00940000159288	ENSGT00940000159878	ENSGT00940000157261.l	ENSGT00950000183124.A	ENSGT00950000183124.C	ENSGT00940000160163	ENSGT00940000158177.a	ENSGT00940000157007.i.b	ENSGT00940000159688	ENSGT00390000011620.a.a.b.e #22	ENSGT00940000158073.b #23	ENSGT00390000018730.A.f	ENSGT00390000005214	ENSGT00940000160100	ENSGT00590000083094.a.a.c.a	ENSGT00940000153456.b.b	ENSGT01030000234637.b.d.a.a.c	ENSGT00390000002873	ENSGT00940000157279	ENSGT00510000046608.B	ENSGT00940000166173	ENSGT00940000153629.a.a.b	ENSGT00940000156409	ENSGT01030000234549.a.a.a.a.a.b.b.a.c	ENSGT00940000155820.a
Cyprininae	DUPLICATION
Cyprininae	ANCESTRAL SPECIES	17	ENSGT00940000159691.j	ENSGT00940000160187.a	ENSGT00940000158700.b	ENSGT00390000005106.l	ENSGT00950000182824.a.a.b.b.b	ENSGT00950000182937.B.a.f	ENSGT00940000159288.d	ENSGT00940000159878.d	ENSGT00940000157261.l.a	ENSGT00950000183124.A.e.b	ENSGT00950000183124.C.d	ENSGT00940000160163.d	ENSGT00940000158177.a.b	ENSGT00940000157007.i.b.a	ENSGT00940000159688.d	ENSGT00390000011620.a.a.b.e.c #22	ENSGT00940000158073.b.b #23
Goldfish	MODERN SPECIES	2	tfeb (ENSCARG00000031931)	ENSCARG00000031993	foxp4 (ENSCARG00000032067)	zgc:101564 (ENSCARG00000032458)	srgap2 (ENSCARG00000032519)	ikbke (ENSCARG00000033003)	RASSF5 (ENSCARG00000033048)	gfDYRK3 (ENSCARG00000033063)	mapkapk2a (ENSCARG00000033130)	il10 (ENSCARG00000033715)	ENSCARG00000033741	PRELP (ENSCARG00000033773)	ENSCARG00000033784	fmoda (ENSCARG00000033805)	slc6a14 (ENSCARG00000033887)	TAF4 (ENSCARG00000001938) #22	cdh4 (ENSCARG00000002166) #23	ENSCARG00000002868	homer3b (ENSCARG00000002881)	ENSCARG00000002919	arrdc2 (ENSCARG00000002931)	ENSCARG00000002965	ENSCARG00000002982	nr2f6b (ENSCARG00000002987)	tax1bp3 (ENSCARG00000002994)	rpusd4 (ENSCARG00000003006)	qrich1 (ENSCARG00000003017)	psmd6 (ENSCARG00000003077)	slc2a9l1 (ENSCARG00000003090)	prickle2b (ENSCARG00000003106)	strn (ENSCARG00000003121)
Cyprininae_a	ANCESTRAL SPECIES	9	ENSGT00940000159691.j	ENSGT00940000160187.a	ENSGT00940000158700.b	ENSGT00390000005106.l	ENSGT00950000182824.a.a.b.b.b	ENSGT00950000182937.B.a.f	ENSGT00940000159288.d	ENSGT00940000159878.d	ENSGT00940000157261.l.a	ENSGT00950000183124.A.e.b	ENSGT00950000183124.C.d	ENSGT00940000160163.d	ENSGT00940000158177.a.b	ENSGT00940000157007.i.b.a	ENSGT00940000159688.d	ENSGT00390000011620.a.a.b.e.c #22	ENSGT00940000158073.b.b #23	ENSGT00390000018730.A.f.f	ENSGT00390000005214.e.b	ENSGT00940000160100.b	ENSGT00590000083094.a.a.c.a.p	ENSGT00940000153456.b.b.b	ENSGT01030000234637.b.d.a.a.c.a.a	ENSGT00390000002873.eb	ENSGT00940000157279.x	ENSGT00510000046608.B.i	ENSGT00940000166173.k	ENSGT00940000153629.a.a.b.b	ENSGT00940000156409.a	ENSGT01030000234549.a.a.a.a.a.b.b.a.c.a	ENSGT00940000155820.a.c.a
Common carp reference	MODERN SPECIES	13	tmem183a (ENSCCRG00000003185)	tfeb (ENSCCRG00000034741)	ENSCCRG00000075549	foxp4 (ENSCCRG00000043836)	zgc:101564 (ENSCCRG00000061267)	srgap2 (ENSCCRG00000037585)	ikbke (ENSCCRG00000037352)	RASSF5 (ENSCCRG00000082840)	dyrk3 (ENSCCRG00000054155)	mapkapk2a (ENSCCRG00000062136)	il19l (ENSCCRG00000028494)	ENSCCRG00000028493	zgc:113307 (ENSCCRG00000028491)	fmoda (ENSCCRG00000057559)	slc6a14 (ENSCCRG00000020342)	ENSCCRG00000020339 #22	cdh4 (ENSCCRG00000069988) #23	ENSCCRG00000060780	ENSCCRG00000076284	C3orf14 (ENSCCRG00000022886)	fezf2 (ENSCCRG00000022884)	ENSCCRG00000054650	nampt2 (ENSCCRG00000060119)	SYNPR (ENSCCRG00000072101)	thoc7 (ENSCCRG00000025484)	ATXN7 (ENSCCRG00000012633)	psmd6 (ENSCCRG00000073683)	slc2a9l1 (ENSCCRG00000036799)	prickle2b (ENSCCRG00000036805)	ADAMTS9 (ENSCCRG00000039031)	magi1b (ENSCCRG00000039246)
Golden-line barbel	MODERN SPECIES	3078																ENSSGRG00000011838 #22
Cyprininae	ANCESTRAL SPECIES	104	ENSGT00940000159691.i	ENSGT00940000160187.b	ENSGT00940000158700.a	ENSGT00390000005106.k	ENSGT00950000182824.a.a.b.b.a	ENSGT00950000182937.B.a.e	ENSGT00940000159288.c	ENSGT00940000159878.c	ENSGT00940000157261.l.b	ENSGT00950000183124.A.e.a	ENSGT00950000183124.C.c	ENSGT00940000160163.c	ENSGT00940000158177.a.a	ENSGT00940000157007.i.b.b	ENSGT00940000159688.c	ENSGT00390000011620.a.a.b.e.d #22	ENSGT00940000158073.b.a #23	ENSGT00390000018730.A.f.e.a	ENSGT00390000018730.A.f.e.b	ENSGT00390000005214.e.a	ENSGT00940000160100.a	ENSGT00590000083094.a.a.c.a.o	ENSGT00940000153456.b.b.a	ENSGT01030000234637.b.d.a.a.c.b	ENSGT00390000002873.db	ENSGT00940000157279.w	ENSGT00510000046608.B.j	ENSGT00940000153629.a.a.b.a	ENSGT00940000156409.b	ENSGT01030000234549.a.a.a.a.a.b.b.a.c.b	ENSGT00940000155820.a.c.b
Cyprininae_a	ANCESTRAL SPECIES	3	ENSGT00940000159691.i	ENSGT00940000160187.b	ENSGT00940000158700.a	ENSGT00390000005106.k	ENSGT00950000182824.a.a.b.b.a	ENSGT00950000182937.B.a.e	ENSGT00940000159288.c	ENSGT00940000159878.c	ENSGT00940000157261.l.b	ENSGT00950000183124.A.e.a	ENSGT00950000183124.C.c	ENSGT00940000160163.c	ENSGT00940000158177.a.a	ENSGT00940000157007.i.b.b	ENSGT00940000159688.c	ENSGT00390000011620.a.a.b.e.d #22	ENSGT00940000158073.b.a #23	ENSGT00390000018730.A.f.e.a	ENSGT00390000018730.A.f.e.b	ENSGT00390000005214.e.a	ENSGT00940000160100.a	ENSGT00590000083094.a.a.c.a.o	ENSGT00940000153456.b.b.a	ENSGT01030000234637.b.d.a.a.c.b	ENSGT00390000002873.db	ENSGT00940000157279.w	ENSGT00510000046608.B.j	ENSGT00940000153629.a.a.b.a	ENSGT00940000156409.b	ENSGT01030000234549.a.a.a.a.a.b.b.a.c.b	ENSGT00940000155820.a.c.b
Common carp reference	MODERN SPECIES	42	tmem183a (ENSCCRG00000057482)	tfeb (ENSCCRG00000031918)	ENSCCRG00000070324	foxp4 (ENSCCRG00000025138)	zgc:101564 (ENSCCRG00000074850)	srgap2 (ENSCCRG00000044861)	ikbke (ENSCCRG00000045071)	RASSF5 (ENSCCRG00000056830)	dyrk3 (ENSCCRG00000067331)	mapkapk2a (ENSCCRG00000063236)	il10 (ENSCCRG00000020358)	il19l (ENSCCRG00000020353)	ENSCCRG00000020349	fmoda (ENSCCRG00000020344)	slc6a14 (ENSCCRG00000027901)	ENSCCRG00000027686 #22	cdh4 (ENSCCRG00000059156) #23	ENSCCRG00000020830	ENSCCRG00000073603	C3orf14 (ENSCCRG00000044348)	fezf2 (ENSCCRG00000044352)	ENSCCRG00000049508	nampt2 (ENSCCRG00000069512)	SYNPR (ENSCCRG00000075099)	thoc7 (ENSCCRG00000040743)	ATXN7 (ENSCCRG00000040714)	psmd6 (ENSCCRG00000040693)	slc2a9l1 (ENSCCRG00000040669)	ADAMTS9 (ENSCCRG00000040660)	magi1b (ENSCCRG00000061477)	phtf1 (ENSCCRG00000027040)
Golden-line barbel	MODERN SPECIES	1	tfeb (ENSSGRG00000046105)	ENSSGRG00000046106	foxp4 (ENSSGRG00000046107)	zgc:101564 (ENSSGRG00000046109)	srgap2 (ENSSGRG00000046111)	ikbke (ENSSGRG00000046121)	RASSF5 (ENSSGRG00000046177)	dyrk3 (ENSSGRG00000046179)	mapkapk2a (ENSSGRG00000046181)	il10 (ENSSGRG00000046204)	il19l (ENSSGRG00000046206)	PRELP (ENSSGRG00000046207)	zgc:113307 (ENSSGRG00000046208)	fmoda (ENSSGRG00000046209)	slc6a14 (ENSSGRG00000046210)	ENSSGRG00000046212 #22	cdh4 (ENSSGRG00000046225) #23	ENSSGRG00000047042	C3orf14 (ENSSGRG00000047044)	fezf2 (ENSSGRG00000047045)	ENSSGRG00000047060	nampt2 (ENSSGRG00000049206)	SYNPR (ENSSGRG00000049398)	thoc7 (ENSSGRG00000049402)	ATXN7 (ENSSGRG00000049405)	psmd6 (ENSSGRG00000049410)	prickle2b (ENSSGRG00000049467)	ADAMTS9 (ENSSGRG00000049470)	rhol (ENSSGRG00000049473)	magi1b (ENSSGRG00000049475)	phtf1 (ENSSGRG00000049523)
Zebrafish	MODERN SPECIES	2	ENSDARG00000112164	srgap2 (ENSDARG00000032161)	ikbke (ENSDARG00000070606)	RASSF5 (ENSDARG00000070601)	dyrk3 (ENSDARG00000070600)	mapkapk2a (ENSDARG00000002552)	il10 (ENSDARG00000078147)	il19l (ENSDARG00000090344)	PRELP (ENSDARG00000070597)	zgc:113307 (ENSDARG00000044894)	fmoda (ENSDARG00000044895)	slc6a14 (ENSDARG00000029866)	ENSDARG00000114741	ENSDARG00000099409	ENSDARG00000103677	ENSDARG00000068192 #22	cdh4 (ENSDARG00000015002) #23	ogfr2 (ENSDARG00000024815)	fezf2 (ENSDARG00000070677)	C11H3orf14 (ENSDARG00000086324)	ENSDARG00000043661	nampt2 (ENSDARG00000027183)	SYNPR (ENSDARG00000037587)	thoc7 (ENSDARG00000015394)	ATXN7 (ENSDARG00000074804)	psmd6 (ENSDARG00000070674)	slc2a9l1 (ENSDARG00000070672)	prickle2b (ENSDARG00000037593)	adamts9 (ENSDARG00000077778)	rhol (ENSDARG00000070666)	magi1b (ENSDARG00000003169)
Clupeocephala	ANCESTRAL SPECIES	180		ENSGT00940000156245.b	ENSGT00390000001787	ENSGT00980000202953	ENSGT00940000156490.b.a	ENSGT00940000163813	ENSGT00390000005939.a.b.a	ENSGT00940000165182.c	ENSGT00940000161589 #24	ENSGT00940000155218.A.d	ENSGT00740000116961	ENSGT00940000157379 #18	ENSGT00940000159853 #19	ENSGT00940000159695 #20	ENSGT00940000156010.db #21	ENSGT00390000011620.a.a.b.f #22	ENSGT00940000158073.a #23	ENSGT00940000167904	ENSGT00940000160902.c.b	ENSGT00390000018730.A.e	ENSGT00940000163687	ENSGT00940000159233	ENSGT00940000160331	ENSGT00950000182872.f.a.a.a.a	ENSGT00940000156477.c	ENSGT00940000164502.a.a	ENSGT00940000159151	ENSGT00390000007823 #7	ENSGT00940000161930	ENSGT00390000002821	ENSGT00940000155532
Otomorpha	ANCESTRAL SPECIES	35	ENSGT00940000156260.c	ENSGT00940000158489.a.a	ENSGT00390000001787	ENSGT00980000202953	ENSGT00940000156490.b.a	ENSGT00940000163813	ENSGT00390000005939.a.b.a	ENSGT00940000165182.c	ENSGT00940000161589 #24	ENSGT00940000155218.A.d	ENSGT00740000116961	ENSGT00940000157379 #18	ENSGT00940000159853 #19	ENSGT00940000159695 #20	ENSGT00940000156010.db #21	ENSGT00390000011620.a.a.b.f #22	ENSGT00940000158073.a #23	ENSGT00940000167904	ENSGT00940000160902.c.b	ENSGT00390000018730.A.e	ENSGT00940000161930	ENSGT00390000002821
Clupeiformes	ANCESTRAL SPECIES	7	ENSGT00940000159490	ENSGT00940000156037.b	ENSGT00940000156260.c	ENSGT00940000158489.a.a	ENSGT00390000001787	ENSGT00940000156490.b.a	ENSGT00940000163813	ENSGT00390000005939.a.b.a	ENSGT00940000165182.c	ENSGT00940000161589 #24	ENSGT00940000155218.A.d	ENSGT00940000157379 #18	ENSGT00940000159853 #19	ENSGT00940000159695 #20	ENSGT00940000156010.db #21	ENSGT00390000011620.a.a.b.f #22	ENSGT00940000158073.a #23	ENSGT00940000167904	ENSGT00940000160902.c.b	ENSGT00390000018730.A.e	ENSGT00940000161930	ENSGT00390000002821	ENSGT00940000155532.`e	ENSGT00390000018003.a	ENSGT00940000158954	ENSGT01030000234629.B	ENSGT00390000012992	ENSGT00940000156846	ENSGT00940000160409	ENSGT00950000182805.a.a.a.a.b	ENSGT00940000153615.a.a.a
Atlantic herring	MODERN SPECIES	20	baz2a (ENSCHAG00000023256)	ENSCHAG00000023236	mipb (ENSCHAG00000023231)	rbm38 (ENSCHAG00000023223)	spo11 (ENSCHAG00000023191)	bmp7b (ENSCHAG00000023183)	irf10 (ENSCHAG00000023178)	ENSCHAG00000023175	ENSCHAG00000023171	ENSCHAG00000023152 #24	ENSCHAG00000023127	MTG2 (ENSCHAG00000023118) #18	SS18L1 (ENSCHAG00000023094) #19	PSMA7 (ENSCHAG00000023064) #20	lsm14b (ENSCHAG00000023053) #21	TAF4 (ENSCHAG00000023023) #22	ebp (ENSCHAG00000023018)	ccdc115 (ENSCHAG00000023013)	ENSCHAG00000023009	apobec2b (ENSCHAG00000023007)	oard1 (ENSCHAG00000022998)	guca1b (ENSCHAG00000022983)	ENSCHAG00000022975	ENSCHAG00000022964	USP19 (ENSCHAG00000022835)	lamb2 (ENSCHAG00000020749)	ENSCHAG00000019282	ENSCHAG00000019059	TNNC2 (ENSCHAG00000019016)	tnnc2.2 (ENSCHAG00000018972)	taf13 (ENSCHAG00000018966)
Denticle herring	MODERN SPECIES	1	ENSDCDG00000024815	ENSDCDG00000024817	rho (ENSDCDG00000024819)	prickle2a (ENSDCDG00000024823)	QRICH1 (ENSDCDG00000024832)	qars1 (ENSDCDG00000024876)	espn (ENSDCDG00000024995)	hes2.2 (ENSDCDG00000025002)	acot7 (ENSDCDG00000025020)	GPR153 (ENSDCDG00000025132)	her3 (ENSDCDG00000025135)	MTG2 (ENSDCDG00000025136) #18	SS18L1 (ENSDCDG00000025139) #19	ENSDCDG00000025143	lsm14b (ENSDCDG00000025151) #21	TAF4 (ENSDCDG00000025155) #22	CDH4 (ENSDCDG00000025404) #23	ENSDCDG00000028998	kcnk15 (ENSDCDG00000028999)	ogfr (ENSDCDG00000029000)	ENSDCDG00000029003	ENSDCDG00000029005	SIKE1 (ENSDCDG00000029006)	slc25a33 (ENSDCDG00000029010)	spsb1 (ENSDCDG00000029014)	gpr157 (ENSDCDG00000029019)	slc2a5 (ENSDCDG00000029022)	CA6 (ENSDCDG00000029025)	eno1a (ENSDCDG00000029037)	RERE (ENSDCDG00000029107)	SAMD11 (ENSDCDG00000029126)
Otophysi	ANCESTRAL SPECIES	115					ENSGT00940000163813	ENSGT00390000005939.a.b.a	ENSGT00940000165182.c	ENSGT00940000161589 #24	ENSGT00940000155218.A.d.a	ENSGT00940000155218.A.d.b	ENSGT00740000116961	ENSGT00940000157379 #18	ENSGT00940000159853 #19	ENSGT00940000159695 #20	ENSGT00940000156010.db #21	ENSGT00390000011620.a.a.b.f #22	ENSGT00940000158073.a #23	ENSGT00940000155141.x	ENSGT00940000160902.c.b	ENSGT00390000018730.A.e	ENSGT00940000161930	ENSGT00390000002821	ENSGT00940000155614.i.a	ENSGT00950000182835.c.c.g.a	ENSGT00940000164454	ENSGT00940000167069	ENSGT00390000018621	ENSGT00940000156650.j	ENSGT00940000157262.n	ENSGT00940000158342.a.a	ENSGT00940000153541.A
Characiphysae	ANCESTRAL SPECIES	73	ENSGT00940000160369	ENSGT00950000182945.b.a.a.a.b.b.a.b	ENSGT00390000013867.bc.b.a	ENSGT00940000157506.f	ENSGT00940000163813	ENSGT00390000005939.a.b.a	ENSGT00940000165182.c	ENSGT00940000161589 #24	ENSGT00940000155218.A.d.a	ENSGT00940000155218.A.d.b	ENSGT00740000116961	ENSGT00940000157379 #18	ENSGT00940000159853 #19	ENSGT00940000159695 #20	ENSGT00940000156010.db #21	ENSGT00390000011620.a.a.b.f #22	ENSGT00940000158073.a #23	ENSGT00940000155141.x	ENSGT00940000160902.c.b	ENSGT00390000018730.A.e	ENSGT00940000161930	ENSGT00390000002821	ENSGT00940000167932.b	ENSGT00410000025882.b	ENSGT00940000157392.p	ENSGT00940000155614.i.a	ENSGT00950000182835.c.c.g.a	ENSGT00940000154681.b.c	ENSGT00530000063829.C.b	ENSGT00940000156917.a	ENSGT00730000111114
Characiphysae_b	ANCESTRAL SPECIES	141	ENSGT01020000230354.A.a.b	ENSGT00940000160369	ENSGT00950000182945.b.a.a.a.b.b.a.b	ENSGT00390000013867.bc.b.a	ENSGT00940000157506.f	ENSGT00940000163813	ENSGT00390000005939.a.b.a	ENSGT00940000165182.c	ENSGT00940000161589 #24	ENSGT00940000155218.A.d.a	ENSGT00740000116961	ENSGT00940000157379 #18	ENSGT00940000159853 #19	ENSGT00940000159695 #20	ENSGT00940000156010.db #21	ENSGT00390000011620.a.a.b.f #22	ENSGT00940000158073.a #23
Characoidei	ANCESTRAL SPECIES	215	ENSGT00940000156326.a.a	ENSGT01020000230354.A.a.b	ENSGT00940000160369	ENSGT00950000182945.b.a.a.a.b.b.a.b	ENSGT00390000013867.bc.b.a	ENSGT00940000157506.f	ENSGT00940000163813	ENSGT00390000005939.a.b.a	ENSGT00940000165182.c	ENSGT00940000161589 #24	ENSGT00940000155218.A.d.a	ENSGT00940000157379 #18	ENSGT00940000159853 #19	ENSGT00940000159695 #20	ENSGT00940000156010.db #21	ENSGT00390000011620.a.a.b.f #22	ENSGT00940000158073.a #23
Red-bellied piranha	MODERN SPECIES	478										ENSPNAG00000012655	ENSPNAG00000012673	MTG2 (ENSPNAG00000012691) #18	SS18L1 (ENSPNAG00000012700) #19	ENSPNAG00000012730	lsm14b (ENSPNAG00000012777) #21	TAF4 (ENSPNAG00000012792) #22	CDH4 (ENSPNAG00000012844) #23
Mexicana tetra	MODERN SPECIES	55	LGR6 (ENSAMXG00000031251)	ENSAMXG00000032045	TULP1 (ENSAMXG00000005179)	ENSAMXG00000041624	ENSAMXG00000029908	irf10 (ENSAMXG00000032414)	ENSAMXG00000002724	ENSAMXG00000035993	ENSAMXG00000040727 #24	ENSAMXG00000042674	MTG2 (ENSAMXG00000037141) #18	SS18L1 (ENSAMXG00000044015) #19	ENSAMXG00000041216 #19	PSMA7 (ENSAMXG00000041229) #20	lsm14b (ENSAMXG00000002865) #21	TAF4 (ENSAMXG00000002886) #22	CDH4 (ENSAMXG00000002925) #23
Electric eel	MODERN SPECIES	718								ENSEEEG00000001282 #24	ENSEEEG00000001280	ENSEEEG00000001276	MTG2 (ENSEEEG00000001275) #18	ENSEEEG00000001274 #19	ENSEEEG00000001273	ENSEEEG00000001272	ENSEEEG00000001270 #21	ENSEEEG00000001268 #22	CDH4 (ENSEEEG00000001230) #23
Euteleosteomorpha	ANCESTRAL SPECIES	11	ENSGT00940000156027.a	ENSGT00940000153541.A	ENSGT00940000157262.m.b	ENSGT00390000001787	ENSGT00940000156490.b.a	ENSGT00940000163813	ENSGT00390000005939.a.b.a	ENSGT00940000165182.c	ENSGT00940000161589 #24	ENSGT00940000155218.A.d	ENSGT00740000116961	ENSGT00940000157379 #18	ENSGT00940000159853 #19	ENSGT00940000159695 #20	ENSGT00940000156010.db #21	ENSGT00390000011620.a.a.b.f #22	ENSGT00940000158073.a #23	ENSGT00940000167904	ENSGT00940000160902.c.b	ENSGT00390000018730.A.e	ENSGT00940000161930	ENSGT00940000154897.q	ENSGT00510000046470.a.a.b	ENSGT00950000183021.a.b.c	ENSGT00940000158489.a.a	ENSGT00940000156260.c	ENSGT00940000156037.b	ENSGT00940000159490	ENSGT00940000154256.ac	ENSGT00440000033468	ENSGT00390000011466
Acanthomorphata	ANCESTRAL SPECIES	3	ENSGT00940000156027.a	ENSGT00940000153541.A	ENSGT00940000157262.m.b	ENSGT00940000156030.j	ENSGT00940000166256	ENSGT00390000001787	ENSGT00940000156490.b.a	ENSGT00940000163813	ENSGT00390000005939.a.b.a	ENSGT00940000165182.c	ENSGT00940000161589 #24	ENSGT00940000155218.A.d	ENSGT00940000157379 #18	ENSGT00940000159853 #19	ENSGT00940000156010.db #21	ENSGT00390000011620.a.a.b.f #22	ENSGT00940000158073.a #23	ENSGT00940000160902.c.b	ENSGT00390000018730.A.e	ENSGT00940000161930	ENSGT00390000002821	ENSGT00940000155532	ENSGT00940000154897.q	ENSGT00510000046470.a.a.b	ENSGT00950000183021.a.b.c	ENSGT00940000158489.a.a	ENSGT00940000156245.b	ENSGT00940000156260.c	ENSGT00940000156037.b	ENSGT00940000159490	ENSGT00940000154256.ac
Euacanthomorphacea	ANCESTRAL SPECIES	2	ENSGT00940000156027.a	ENSGT00940000153541.A	ENSGT00940000157262.m.b	ENSGT00940000156030.j	ENSGT00940000166256	ENSGT00390000001787	ENSGT00940000156490.b.a	ENSGT00940000163813	ENSGT00390000005939.a.b.a	ENSGT00940000165182.c	ENSGT00940000161589 #24	ENSGT00940000155218.A.d	ENSGT00940000157379 #18	ENSGT00940000159853 #19	ENSGT00940000156010.db #21	ENSGT00390000011620.a.a.b.f #22	ENSGT00940000158073.a #23	ENSGT00990000209425	ENSGT00940000160902.c.b	ENSGT00390000018730.A.e	ENSGT00940000161930	ENSGT00390000002821	ENSGT00940000155532	ENSGT00940000154897.q	ENSGT00510000046470.a.a.b	ENSGT00950000183021.a.b.c	ENSGT00940000158489.a.a	ENSGT00940000156260.c	ENSGT00940000156037.b	ENSGT00940000159490	ENSGT00940000154256.ac
Percomorphaceae	ANCESTRAL SPECIES	7	ENSGT00940000153541.A	ENSGT00940000157262.m.b	ENSGT00940000156030.j	ENSGT00940000166256	ENSGT00940000174536	ENSGT00390000001787	ENSGT00940000156490.b.a	ENSGT00940000163813	ENSGT00390000005939.a.b.a	ENSGT00940000165182.c	ENSGT00940000161589 #24	ENSGT00940000155218.A.d	ENSGT00940000157379 #18	ENSGT00940000159853 #19	ENSGT00940000156010.db #21	ENSGT00390000011620.a.a.b.f #22	ENSGT00940000158073.a #23	ENSGT00990000209425	ENSGT00940000160902.c.b	ENSGT00390000018730.A.e	ENSGT00940000161930	ENSGT00390000002821	ENSGT00940000155532	ENSGT00940000154897.q	ENSGT00510000046470.a.a.b	ENSGT00950000183021.a.b.c	ENSGT00940000158489.a.a	ENSGT00940000156260.c	ENSGT00940000156037.b	ENSGT00940000159490	ENSGT00940000154256.ac
Percomorphaceae_B	ANCESTRAL SPECIES	6	ENSGT00940000156062.n	ENSGT00390000003282.B.e	ENSGT00940000156027.a	ENSGT00940000153541.A	ENSGT00940000157262.m.b	ENSGT00390000001787	ENSGT00940000156490.b.a	ENSGT00940000163813	ENSGT00390000005939.a.b.a	ENSGT00940000165182.c	ENSGT00940000161589 #24	ENSGT00940000155218.A.d	ENSGT00940000157379 #18	ENSGT00940000159853 #19	ENSGT00940000156010.db #21	ENSGT00390000011620.a.a.b.f #22	ENSGT00940000158073.a #23	ENSGT00990000209425	ENSGT00940000160902.c.b	ENSGT00390000018730.A.e	ENSGT00940000161930	ENSGT00390000002821	ENSGT00940000155532	ENSGT00940000154897.q	ENSGT00510000046470.a.a.b	ENSGT00950000183021.a.b.c	ENSGT00940000158489.a.a	ENSGT00940000156260.c	ENSGT00940000156037.b	ENSGT00940000159490	ENSGT00940000154256.ac
Percomorphaceae_C	ANCESTRAL SPECIES	4	ENSGT00940000156062.n	ENSGT00390000003282.B.e	ENSGT00940000156027.a	ENSGT00940000153541.A	ENSGT00940000157262.m.b	ENSGT00390000001787	ENSGT00940000156490.b.a	ENSGT00940000163813	ENSGT00390000005939.a.b.a	ENSGT00940000165182.c	ENSGT00940000161589 #24	ENSGT00940000155218.A.d	ENSGT00940000157379 #18	ENSGT00940000159853 #19	ENSGT00940000156010.db #21	ENSGT00390000011620.a.a.b.f #22	ENSGT00940000158073.a #23	ENSGT00940000160902.c.b	ENSGT00390000018730.A.e	ENSGT00940000161930	ENSGT00390000002821	ENSGT00940000155532	ENSGT00940000154897.q	ENSGT00510000046470.a.a.b	ENSGT00950000183021.a.b.c	ENSGT00940000158489.a.a	ENSGT00940000156260.c	ENSGT00940000156037.b	ENSGT00940000159490	ENSGT00940000154256.ac	ENSGT00440000033468
Percomorphaceae_D	ANCESTRAL SPECIES	4	ENSGT00390000003282.B.e	ENSGT00940000156027.a	ENSGT00940000153541.A	ENSGT00940000157262.m.b	ENSGT00940000156030.j	ENSGT00390000001787	ENSGT00940000156490.b.a	ENSGT00940000163813	ENSGT00390000005939.a.b.a	ENSGT00940000165182.c	ENSGT00940000161589 #24	ENSGT00940000155218.A.d	ENSGT00940000157379 #18	ENSGT00940000159853 #19	ENSGT00940000156010.db #21	ENSGT00390000011620.a.a.b.f #22	ENSGT00940000158073.a #23	ENSGT00940000160902.c.b	ENSGT00390000018730.A.e	ENSGT00940000161930	ENSGT00390000002821	ENSGT00940000155532	ENSGT00940000154897.q	ENSGT00510000046470.a.a.b	ENSGT00950000183021.a.b.c	ENSGT00940000158489.a.a	ENSGT00940000156260.c	ENSGT00940000156037.b	ENSGT00940000159490	ENSGT00940000154256.ac	ENSGT00440000033468
Anabantaria	ANCESTRAL SPECIES	3	ENSGT00390000003282.B.e	ENSGT00940000156027.a	ENSGT00940000153541.A	ENSGT00940000157262.m.b	ENSGT00940000156030.j	ENSGT00390000001787	ENSGT00940000156490.b.a	ENSGT00940000163813	ENSGT00390000005939.a.b.a	ENSGT00940000165182.c	ENSGT00940000161589 #24	ENSGT00940000155218.A.d	ENSGT00940000157379 #18	ENSGT00940000159853 #19	ENSGT00940000156010.db #21	ENSGT00390000011620.a.a.b.f #22	ENSGT00940000158073.a #23	ENSGT00940000160902.c.b	ENSGT00390000018730.A.e	ENSGT00940000161930	ENSGT00390000002821	ENSGT00940000155532	ENSGT00940000154897.q	ENSGT00510000046470.a.a.b	ENSGT00950000183021.a.b.c	ENSGT00940000158489.a.a	ENSGT00940000156260.c	ENSGT00940000156037.b	ENSGT00940000159490	ENSGT00940000154256.ac	ENSGT00440000033468
Zig-zag eel	MODERN SPECIES	21	ENSMAMG00000024286	slc6a1a (ENSMAMG00000024110)	ENSMAMG00000024111	ENSMAMG00000024112	ENSMAMG00000024113	ENSMAMG00000024114	ENSMAMG00000024115	ENSMAMG00000024116	ENSMAMG00000024117	ENSMAMG00000024118	ENSMAMG00000024120 #24	ENSMAMG00000024121	MTG2 (ENSMAMG00000024122) #18	ENSMAMG00000024685 #19	LSM14B (ENSMAMG00000024124) #21	TAF4 (ENSMAMG00000024125) #22	CDH4 (ENSMAMG00000024126) #23	ENSMAMG00000028231	kcnk15 (ENSMAMG00000024127)	OGFR (ENSMAMG00000024128)	ENSMAMG00000024129	ENSMAMG00000024431	ENSMAMG00000024131	ENSMAMG00000024132	ENSMAMG00000024133	ENSMAMG00000024134	rbm38 (ENSMAMG00000024135)	mipb (ENSMAMG00000024136)	ENSMAMG00000024137	baz2a (ENSMAMG00000024138)	ptges3b (ENSMAMG00000024139)
Anabantoidei	ANCESTRAL SPECIES	2	ENSGT00390000003282.B.e	ENSGT00940000156027.a	ENSGT00940000153541.A	ENSGT00940000157262.m.b	ENSGT00940000156030.j	ENSGT00390000001787	ENSGT00940000156490.b.a	ENSGT00940000163813	ENSGT00390000005939.a.b.a	ENSGT00940000165182.c	ENSGT00940000161589 #24	ENSGT00940000155218.A.d	ENSGT00940000157379 #18	ENSGT00940000159853 #19	ENSGT00940000156010.db #21	ENSGT00390000011620.a.a.b.f #22	ENSGT00940000158073.a #23	ENSGT00940000160902.c.b	ENSGT00390000018730.A.e	ENSGT00940000161930	ENSGT00390000002821	ENSGT00940000155532	ENSGT00940000154897.q	ENSGT00510000046470.a.a.b	ENSGT00950000183021.a.b.c	ENSGT00940000158489.a.a	ENSGT00940000156260.c	ENSGT00940000156037.b	ENSGT00940000159490	ENSGT00940000154256.ac	ENSGT00440000033468
Climbing perch	MODERN SPECIES	20	ENSATEG00000015602	slc6a1a (ENSATEG00000015611)	ENSATEG00000027776	ENSATEG00000015660	ENSATEG00000015672	ENSATEG00000015710	ENSATEG00000015733	ENSATEG00000015753	ENSATEG00000015767	ENSATEG00000026513	ENSATEG00000015788 #24	ENSATEG00000015845	MTG2 (ENSATEG00000015862) #18	ENSATEG00000015876 #19	LSM14B (ENSATEG00000015895) #21	TAF4 (ENSATEG00000015915) #22	CDH4 (ENSATEG00000015956) #23	kcnk15 (ENSATEG00000028850)	ENSATEG00000016071	ENSATEG00000016084	ENSATEG00000028564	ENSATEG00000016186	ENSATEG00000016250	ENSATEG00000016274	ENSATEG00000016329	rbm38 (ENSATEG00000016366)	mipb (ENSATEG00000016400)	ENSATEG00000016551	baz2a (ENSATEG00000016605)	ptges3b (ENSATEG00000016669)	ENSATEG00000027021
Siamese fighting fish	MODERN SPECIES	18	pdyn (ENSBSLG00000014084)	GMEB2 (ENSBSLG00000014099)	tpk2 (ENSBSLG00000014122)	ENSBSLG00000014207	tpx2 (ENSBSLG00000014250)	plod1a (ENSBSLG00000014480)	si:dkeyp-104h9.5 (ENSBSLG00000015763)	phc2a (ENSBSLG00000016596)	ENSBSLG00000016631	rcc2 (ENSBSLG00000016722)	rpl22 (ENSBSLG00000016985)	ENSBSLG00000017139	MTG2 (ENSBSLG00000017198) #18	ENSBSLG00000017212 #19	LSM14B (ENSBSLG00000017226) #21	TAF4 (ENSBSLG00000017261) #22	CDH4 (ENSBSLG00000017726) #23	kcnk15 (ENSBSLG00000017936)	ogfr (ENSBSLG00000017938)	col9a3 (ENSBSLG00000017953)	ENSBSLG00000008226	ENSBSLG00000008243	ENSBSLG00000008260	prkcbp1l (ENSBSLG00000008515)	zgc:113278 (ENSBSLG00000011401)	NCOA3 (ENSBSLG00000011651)	rbm38 (ENSBSLG00000011817)	mipb (ENSBSLG00000011837)	ENSBSLG00000011886	baz2a (ENSBSLG00000011904)	ptges3b (ENSBSLG00000011971)
Carangaria	ANCESTRAL SPECIES	2	ENSGT00940000153541.A	ENSGT00940000157262.m.b	ENSGT00940000156030.j	ENSGT00940000166256.b	ENSGT00940000166256.a	ENSGT00390000001787	ENSGT00940000156490.b.a	ENSGT00940000163813	ENSGT00390000005939.a.b.a	ENSGT00940000165182.c	ENSGT00940000161589 #24	ENSGT00940000155218.A.d	ENSGT00940000157379 #18	ENSGT00940000159853 #19	ENSGT00940000156010.db #21	ENSGT00390000011620.a.a.b.f #22	ENSGT00940000158073.a #23	ENSGT00940000160902.c.b	ENSGT00390000018730.A.e	ENSGT00940000161930	ENSGT00390000002821	ENSGT00940000155532	ENSGT00940000154897.q	ENSGT00510000046470.a.a.b	ENSGT00950000183021.a.b.c	ENSGT00940000158489.a.a	ENSGT00940000156260.c	ENSGT00940000156037.b	ENSGT00940000159490	ENSGT00940000154256.ac	ENSGT00440000033468
Pleuronectoidei	ANCESTRAL SPECIES	38	ENSGT00940000156062.n	ENSGT00390000003282.B.e	ENSGT00940000156027.a	ENSGT00940000153541.A	ENSGT00940000157262.m.b	ENSGT00940000156030.j	ENSGT00390000001787	ENSGT00940000156490.b.a	ENSGT00940000163813	ENSGT00390000005939.a.b.a	ENSGT00940000165182.c	ENSGT00940000161589 #24	ENSGT00940000157379 #18	ENSGT00940000159853 #19	ENSGT00940000156010.db #21	ENSGT00390000011620.a.a.b.f #22	ENSGT00940000158073.a #23	ENSGT00940000160902.c.b	ENSGT00390000018730.A.e	ENSGT00940000161930	ENSGT00940000154897.q	ENSGT00510000046470.a.a.b	ENSGT00950000183021.a.b.c	ENSGT00940000158489.a.a	ENSGT00940000156260.c	ENSGT00940000156037.b	ENSGT00940000159490	ENSGT00940000154256.ac	ENSGT00440000033468	ENSGT00390000011466	ENSGT00940000158666.a.b
Turbot	MODERN SPECIES	2	slc6a1a (ENSSMAG00000020940)	ENSSMAG00000020950	ENSSMAG00000020951	ENSSMAG00000032794	ENSSMAG00000020952	ENSSMAG00000020963	ENSSMAG00000020985	ENSSMAG00000020987	ENSSMAG00000025353	ENSSMAG00000031631	ENSSMAG00000028209 #24	ENSSMAG00000038052 #24	MTG2 (ENSSMAG00000000126) #18	ENSSMAG00000000131 #19	LSM14B (ENSSMAG00000000135) #21	TAF4 (ENSSMAG00000000140) #22	CDH4 (ENSSMAG00000000251) #23	ENSSMAG00000024970	kcnk15 (ENSSMAG00000035293)	ENSSMAG00000032606	ENSSMAG00000000227	ENSSMAG00000000219	ENSSMAG00000031554	ENSSMAG00000000200	ENSSMAG00000000186	ENSSMAG00000000179	ENSSMAG00000000158	rbm38 (ENSSMAG00000000152)	mipb (ENSSMAG00000027662)	ENSSMAG00000000147	baz2a (ENSSMAG00000037563)
Carangaria_A	ANCESTRAL SPECIES	1	ENSGT00390000003282.B.e	ENSGT00940000156027.a	ENSGT00940000153541.A	ENSGT00940000157262.m.b	ENSGT00940000156030.j	ENSGT00390000001787	ENSGT00940000156490.b.a	ENSGT00940000163813	ENSGT00390000005939.a.b.a	ENSGT00940000165182.c	ENSGT00940000161589 #24	ENSGT00940000155218.A.d	ENSGT00940000157379 #18	ENSGT00940000159853 #19	ENSGT00940000156010.db #21	ENSGT00390000011620.a.a.b.f #22	ENSGT00940000158073.a #23	ENSGT00940000160902.c.b	ENSGT00390000018730.A.e	ENSGT00940000161930	ENSGT00390000002821	ENSGT00940000155532	ENSGT00940000154897.q	ENSGT00510000046470.a.a.b	ENSGT00950000183021.a.b.c	ENSGT00940000158489.a.a	ENSGT00940000156260.c	ENSGT00940000156037.b	ENSGT00940000159490	ENSGT00940000154256.ac	ENSGT00440000033468
Seriola	ANCESTRAL SPECIES	8	ENSGT00940000153541.A	ENSGT00940000157262.m.b	ENSGT00940000156030.j	ENSGT00940000166256.b	ENSGT00940000166256.a	ENSGT00390000001787	ENSGT00940000156490.b.a	ENSGT00940000163813	ENSGT00390000005939.a.b.a	ENSGT00940000165182.c	ENSGT00940000161589 #24	ENSGT00940000155218.A.d	ENSGT00940000157379 #18	ENSGT00940000159853 #19	ENSGT00940000156010.db #21	ENSGT00390000011620.a.a.b.f #22	ENSGT00940000158073.a #23	ENSGT00940000160902.c.b	ENSGT00390000018730.A.e	ENSGT00940000161930	ENSGT00390000002821	ENSGT00940000155532	ENSGT00940000154897.q	ENSGT00510000046470.a.a.b	ENSGT00950000183021.a.b.c	ENSGT00940000158489.a.a	ENSGT00940000156260.c	ENSGT00940000156037.b	ENSGT00940000159490	ENSGT00940000154256.ac	ENSGT00440000033468
Yellowtail amberjack	MODERN SPECIES	3175														lsm14b (ENSSLDG00000011354) #21	ENSSLDG00000011341 #21	TAF4 (ENSSLDG00000011310) #22	CDH4 (ENSSLDG00000011270) #23	kcnk15 (ENSSLDG00000011249)	ogfr (ENSSLDG00000011229)	col9a3 (ENSSLDG00000011159)	ENSSLDG00000011063	prkcbp1l (ENSSLDG00000010967)	zgc:113278 (ENSSLDG00000010912)	ENSSLDG00000010873	rbm38 (ENSSLDG00000010845)	mipb (ENSSLDG00000010819)	ENSSLDG00000010793	ENSSLDG00000010765	ENSSLDG00000010749	ptges3b (ENSSLDG00000010723)	ENSSLDG00000010609
Greater amberjack	MODERN SPECIES	16	VGLL4 (ENSSDUG00000000240)	slc6a1a (ENSSDUG00000000159)	ENSSDUG00000000111	DUSP7 (ENSSDUG00000000089)	ENSSDUG00000022838	spo11 (ENSSDUG00000022830)	bmp7b (ENSSDUG00000022821)	irf10 (ENSSDUG00000022811)	ENSSDUG00000022805	ENSSDUG00000022793 #24	ENSSDUG00000022787	ENSSDUG00000022785	MTG2 (ENSSDUG00000022779) #18	ENSSDUG00000022774 #19	lsm14b (ENSSDUG00000022770) #21	TAF4 (ENSSDUG00000022762) #22	CDH4 (ENSSDUG00000022738) #23	kcnk15 (ENSSDUG00000022731)	ogfr (ENSSDUG00000022730)	col9a3 (ENSSDUG00000022709)	ENSSDUG00000022702	ENSSDUG00000022678	prkcbp1l (ENSSDUG00000022648)	zgc:113278 (ENSSDUG00000022639)	NCOA3 (ENSSDUG00000022617)	rbm38 (ENSSDUG00000022611)	mipb (ENSSDUG00000022586)	ENSSDUG00000022579	baz2a (ENSSDUG00000022561)	ptges3b (ENSSDUG00000022549)	naca (ENSSDUG00000022504)
Barramundi perch	MODERN SPECIES	252	VGLL4 (ENSLCAG00010019468)	slc6a1a (ENSLCAG00010019476)	ENSLCAG00010019519	DUSP7 (ENSLCAG00010019521)	ENSLCAG00010019529	spo11 (ENSLCAG00010019536)	bmp7b (ENSLCAG00010019543)	irf10 (ENSLCAG00010019557)	ENSLCAG00010019562	ENSLCAG00010019563	ENSLCAG00010019564 #24	ENSLCAG00010019574	MTG2 (ENSLCAG00010019585) #18	SS18L1 (ENSLCAG00010019593) #19	lsm14b (ENSLCAG00010019596) #21	TAF4 (ENSLCAG00010019602) #22	CDH4 (ENSLCAG00010019669) #23
Eupercaria	ANCESTRAL SPECIES	4	ENSGT00390000003282.B.e	ENSGT00940000156027.a	ENSGT00940000153541.A	ENSGT00940000157262.m.b	ENSGT00940000156030.j	ENSGT00390000001787	ENSGT00940000156490.b.a	ENSGT00940000163813	ENSGT00390000005939.a.b.a	ENSGT00940000165182.c	ENSGT00940000161589 #24	ENSGT00940000155218.A.d	ENSGT00940000157379 #18	ENSGT00940000159853 #19	ENSGT00940000156010.db #21	ENSGT00390000011620.a.a.b.f #22	ENSGT00940000158073.a #23	ENSGT00940000160902.c.b	ENSGT00390000018730.A.e	ENSGT00940000161930	ENSGT00390000002821	ENSGT00940000155532	ENSGT00940000154897.q	ENSGT00510000046470.a.a.b	ENSGT00950000183021.a.b.c	ENSGT00940000158489.a.a	ENSGT00940000156260.c	ENSGT00940000156037.b	ENSGT00940000159490	ENSGT00940000154256.ac	ENSGT00440000033468
Tetraodontidae	ANCESTRAL SPECIES	2	ENSGT00940000156084	ENSGT00940000156062.n	ENSGT00390000003282.B.e	ENSGT00940000156027.a	ENSGT00940000153541.A	ENSGT00940000157262.m.b	ENSGT00390000001787	ENSGT00940000156490.b.a	ENSGT00940000163813	ENSGT00390000005939.a.b.a	ENSGT00940000165182.c	ENSGT00940000161589 #24	ENSGT00940000157379 #18	ENSGT00940000159853 #19	ENSGT00940000156010.db #21	ENSGT00390000011620.a.a.b.f #22	ENSGT00940000158073.a #23	ENSGT00940000160902.c.b	ENSGT00390000018730.A.e	ENSGT00940000161930	ENSGT00940000174854	ENSGT00940000154897.q	ENSGT00510000046470.a.a.b	ENSGT00950000183021.a.b.c	ENSGT00940000158489.a.a	ENSGT00940000156260.c	ENSGT00940000156037.b	ENSGT00940000159490	ENSGT00940000154256.ac	ENSGT00440000033468	ENSGT00390000011466
Fugu	MODERN SPECIES	15	raf1a (ENSTRUG00000006611)	Syn2B (ENSTRUG00000006203)	VGLL4 (ENSTRUG00000023743)	slc6a1a (ENSTRUG00000005690)	ENSTRUG00000005516	DUSP7 (ENSTRUG00000007779)	spo11 (ENSTRUG00000004583)	bmp7b (ENSTRUG00000003888)	irf10 (ENSTRUG00000002917)	ENSTRUG00000029935	ENSTRUG00000028740	ENSTRUG00000001661 #24	MTG2 (ENSTRUG00000001561) #18	SS18L1 (ENSTRUG00000028532) #19	lsm14b (ENSTRUG00000001529) #21	TAF4 (ENSTRUG00000001439) #22	CDH4 (ENSTRUG00000007673) #23	ENSTRUG00000027025	kcnk15 (ENSTRUG00000022486)	ogfr (ENSTRUG00000019853)	col9a3 (ENSTRUG00000006672)	ENSTRUG00000029510	ENSTRUG00000029106	prkcbp1l (ENSTRUG00000005834)	zgc:113278 (ENSTRUG00000005372)	NCOA3 (ENSTRUG00000004450)	rbm38 (ENSTRUG00000026395)	mipb (ENSTRUG00000028275)	ENSTRUG00000024312	ENSTRUG00000003058	ptges3b (ENSTRUG00000022850)
Tetraodon	MODERN SPECIES	24	cnbpa (ENSTNIG00000017940)	raf1a (ENSTNIG00000012621)	syn2a (ENSTNIG00000012620)	slc6a1a (ENSTNIG00000012619)	ENSTNIG00000012618	DUSP7 (ENSTNIG00000012617)	ENSTNIG00000012616	spo11 (ENSTNIG00000012615)	bmp7b (ENSTNIG00000012614)	irf10 (ENSTNIG00000012613)	ENSTNIG00000000162	ENSTNIG00000012612 #24	MTG2 (ENSTNIG00000012611) #18	SS18L1 (ENSTNIG00000012610) #19	lsm14b (ENSTNIG00000012609) #21	TAF4 (ENSTNIG00000012608) #22	CDH4 (ENSTNIG00000012607) #23	kcnk15 (ENSTNIG00000012606)	ogfr (ENSTNIG00000012605)	col9a3 (ENSTNIG00000012604)	ENSTNIG00000000421	prkcbp1l (ENSTNIG00000012603)	zgc:113278 (ENSTNIG00000012602)	NCOA3 (ENSTNIG00000012601)	ENSTNIG00000012600	mipb (ENSTNIG00000012599)	ENSTNIG00000012598	baz2a (ENSTNIG00000012597)	ptges3b (ENSTNIG00000012596)	naca (ENSTNIG00000012595)	ADCY6 (ENSTNIG00000012594)
Eupecaria_A	ANCESTRAL SPECIES	4	ENSGT00390000003282.B.e	ENSGT00940000156027.a	ENSGT00940000153541.A	ENSGT00940000157262.m.b	ENSGT00940000156030.j	ENSGT00390000001787	ENSGT00940000156490.b.a	ENSGT00940000163813	ENSGT00390000005939.a.b.a	ENSGT00940000165182.c	ENSGT00940000161589 #24	ENSGT00940000155218.A.d	ENSGT00940000157379 #18	ENSGT00940000159853 #19	ENSGT00940000156010.db #21	ENSGT00390000011620.a.a.b.f #22	ENSGT00940000158073.a #23	ENSGT00940000160902.c.b	ENSGT00390000018730.A.e	ENSGT00940000161930	ENSGT00390000002821	ENSGT00940000155532	ENSGT00940000154897.q	ENSGT00510000046470.a.a.b	ENSGT00950000183021.a.b.c	ENSGT00940000158489.a.a	ENSGT00940000156260.c	ENSGT00940000156037.b	ENSGT00940000159490	ENSGT00940000154256.ac	ENSGT00440000033468
Ballan wrasse	MODERN SPECIES	26	slc6a1a (ENSLBEG00000007443)	ENSLBEG00000007505	DUSP7 (ENSLBEG00000007544)	ENSLBEG00000007571	spo11 (ENSLBEG00000007627)	bmp7b (ENSLBEG00000007667)	irf10 (ENSLBEG00000007684)	ENSLBEG00000007715	ENSLBEG00000007734	ENSLBEG00000007774 #24	ENSLBEG00000007883	MTG2 (ENSLBEG00000007918) #18	ENSLBEG00000007935 #19	lsm14b (ENSLBEG00000007951) #21	ENSLBEG00000007971 #21	TAF4 (ENSLBEG00000007994) #22	nr2c2 (ENSLBEG00000008028)	ENSLBEG00000008057	wdr46 (ENSLBEG00000008068)	ENSLBEG00000008109	ENSLBEG00000008156	ENSLBEG00000008197	ENSLBEG00000008244	ogg1 (ENSLBEG00000008269)	qars1 (ENSLBEG00000008312)	QRICH1 (ENSLBEG00000008381)	ENSLBEG00000008431	ENSLBEG00000008455	prickle2a (ENSLBEG00000008475)	rho (ENSLBEG00000008570)	MAGI1 (ENSLBEG00000009222)
Eupecaria_B	ANCESTRAL SPECIES	5	ENSGT00390000003282.B.e	ENSGT00940000156027.a	ENSGT00940000153541.A	ENSGT00940000157262.m.b	ENSGT00940000156030.j	ENSGT00390000001787	ENSGT00940000156490.b.a	ENSGT00940000163813	ENSGT00390000005939.a.b.a	ENSGT00940000165182.c	ENSGT00940000161589 #24	ENSGT00940000155218.A.d	ENSGT00940000157379 #18	ENSGT00940000159853 #19	ENSGT00940000156010.db #21	ENSGT00390000011620.a.a.b.f #22	ENSGT00940000158073.a #23	ENSGT00940000160902.c.b	ENSGT00390000018730.A.e	ENSGT00940000161930	ENSGT00390000002821	ENSGT00940000155532	ENSGT00940000154897.q	ENSGT00510000046470.a.a.b	ENSGT00950000183021.a.b.c	ENSGT00940000158489.a.a	ENSGT00940000156260.c	ENSGT00940000156037.b	ENSGT00940000159490	ENSGT00940000154256.ac	ENSGT00440000033468
Eupecaria_C	ANCESTRAL SPECIES	5	ENSGT00390000003282.B.e	ENSGT00940000156027.a	ENSGT00940000153541.A	ENSGT00940000157262.m.b	ENSGT00940000156030.j	ENSGT00390000001787	ENSGT00940000156490.b.a	ENSGT00940000163813	ENSGT00390000005939.a.b.a	ENSGT00940000165182.c	ENSGT00940000161589 #24	ENSGT00940000155218.A.d	ENSGT00940000157379 #18	ENSGT00940000159853 #19	ENSGT00940000156010.db #21	ENSGT00390000011620.a.a.b.f #22	ENSGT00940000158073.a #23	ENSGT00940000160902.c.b	ENSGT00390000018730.A.e	ENSGT00940000161930	ENSGT00390000002821	ENSGT00940000155532	ENSGT00940000154897.q	ENSGT00510000046470.a.a.b	ENSGT00950000183021.a.b.c	ENSGT00940000158489.a.a	ENSGT00940000156260.c	ENSGT00940000156037.b	ENSGT00940000159490	ENSGT00940000154256.ac	ENSGT00440000033468
Eupercaria_incertae_sedis	ANCESTRAL SPECIES	15	ENSGT00390000003282.B.e	ENSGT00940000156027.a	ENSGT00940000153541.A	ENSGT00940000157262.m.b	ENSGT00940000156030.j	ENSGT00390000001787	ENSGT00940000156490.b.a	ENSGT00940000163813	ENSGT00390000005939.a.b.a	ENSGT00940000165182.c	ENSGT00940000161589 #24	ENSGT00940000155218.A.d	ENSGT00940000157379 #18	ENSGT00940000159853 #19	ENSGT00940000156010.db #21	ENSGT00390000011620.a.a.b.f #22	ENSGT00940000158073.a #23	ENSGT00940000160902.c.b	ENSGT00390000018730.A.e	ENSGT00940000161930	ENSGT00390000002821	ENSGT00940000155532	ENSGT00940000154897.q	ENSGT00510000046470.a.a.b	ENSGT00950000183021.a.b.c	ENSGT00940000158489.a.a	ENSGT00940000156260.c	ENSGT00940000156037.b	ENSGT00940000159490	ENSGT00940000154256.ac	ENSGT00440000033468
European seabass	MODERN SPECIES	14	ENSDLAG00005028508	slc6a1a (ENSDLAG00005004349)	ENSDLAG00005004200	ENSDLAG00005026444	ENSDLAG00005004136	ENSDLAG00005004117	ENSDLAG00005004070	ENSDLAG00005004052	ENSDLAG00005004048	ENSDLAG00005004039	ENSDLAG00005004017 #24	ENSDLAG00005003982	MTG2 (ENSDLAG00005032440) #18	SS18L1 (ENSDLAG00005003909) #19	LSM14B (ENSDLAG00005003893) #21	TAF4 (ENSDLAG00005003568) #22	CDH4 (ENSDLAG00005001494) #23	kcnk15 (ENSDLAG00005001321)	OGFR (ENSDLAG00005001310)	ENSDLAG00005001277	ENSDLAG00005001261	ENSDLAG00005033315	ENSDLAG00005025696	ENSDLAG00005025634	ENSDLAG00005025623	rbm38 (ENSDLAG00005025619)	mipb (ENSDLAG00005026810)	ENSDLAG00005031473	ENSDLAG00005035077	baz2a (ENSDLAG00005025601)	ptges3b (ENSDLAG00005025592)
Large yellow croaker	MODERN SPECIES	18	slc6a1a (ENSLCRG00005007120)	ENSLCRG00005007163	DUSP7 (ENSLCRG00005007164)	ENSLCRG00005007165	spo11 (ENSLCRG00005001447)	bmp7b (ENSLCRG00005001589)	IRF10 (ENSLCRG00005001665)	ENSLCRG00005001688	ENSLCRG00005001702	ENSLCRG00005001718 #24	ENSLCRG00005001758	ENSLCRG00005001839	MTG2 (ENSLCRG00005001847) #18	SS18L1 (ENSLCRG00005001860) #19	lsm14b (ENSLCRG00005001876) #21	TAF4 (ENSLCRG00005001886) #22	CDH4 (ENSLCRG00005002055) #23	ENSLCRG00005006171	kcnk15 (ENSLCRG00005006172)	ogfr (ENSLCRG00005006174)	col9a3 (ENSLCRG00005006177)	ENSLCRG00005006184	ENSLCRG00005006185	prkcbp1l (ENSLCRG00005006209)	zgc:113278 (ENSLCRG00005006718)	NCOA3 (ENSLCRG00005006720)	rbm38 (ENSLCRG00005006721)	mipb (ENSLCRG00005006722)	ENSLCRG00005006723	baz2a (ENSLCRG00005006725)	ptges3b (ENSLCRG00005006726)
Gilthead seabream	MODERN SPECIES	21	slc6a1a (ENSSAUG00010014234)	ENSSAUG00010014292	ENSSAUG00010014324	DUSP7 (ENSSAUG00010014328)	ENSSAUG00010014329	spo11 (ENSSAUG00010014336)	bmp7b (ENSSAUG00010014363)	irf10 (ENSSAUG00010014372)	ENSSAUG00010014374	ENSSAUG00010014377	ENSSAUG00010014380	ENSSAUG00010014382 #24	MTG2 (ENSSAUG00010004113) #18	SS18L1 (ENSSAUG00010004145) #19	lsm14b (ENSSAUG00010004173) #21	TAF4 (ENSSAUG00010004212) #22	CDH4 (ENSSAUG00010004420) #23	kcnk15 (ENSSAUG00010007910)	ogfr (ENSSAUG00010007911)	col9a3 (ENSSAUG00010007913)	ENSSAUG00010007920	ENSSAUG00010007921	prkcbp1l (ENSSAUG00010007956)	zgc:113278 (ENSSAUG00010012382)	NCOA3 (ENSSAUG00010012463)	rbm38 (ENSSAUG00010012466)	mipb (ENSSAUG00010012471)	ENSSAUG00010012473	baz2a (ENSSAUG00010012475)	naca (ENSSAUG00010012484)	prim1 (ENSSAUG00010012495)
Perciformes	ANCESTRAL SPECIES	4	ENSGT00390000003282.B.e	ENSGT00940000156027.a	ENSGT00940000153541.A	ENSGT00940000157262.m.b	ENSGT00940000156030.j	ENSGT00390000001787	ENSGT00940000156490.b.a	ENSGT00940000163813	ENSGT00390000005939.a.b.a	ENSGT00940000165182.c	ENSGT00940000161589 #24	ENSGT00940000155218.A.d	ENSGT00940000157379 #18	ENSGT00940000159853 #19	ENSGT00940000156010.db #21	ENSGT00390000011620.a.a.b.f #22	ENSGT00940000158073.a #23	ENSGT00940000160902.c.b	ENSGT00390000018730.A.e	ENSGT00940000161930	ENSGT00390000002821	ENSGT00940000155532	ENSGT00940000154897.q	ENSGT00510000046470.a.a.b	ENSGT00950000183021.a.b.c	ENSGT00940000158489.a.a	ENSGT00940000156260.c	ENSGT00940000156037.b	ENSGT00940000159490	ENSGT00940000154256.ac	ENSGT00440000033468
Cottioidei	ANCESTRAL SPECIES	2	ENSGT00390000003282.B.e	ENSGT00940000156027.a	ENSGT00940000153541.A	ENSGT00940000157262.m.b	ENSGT00940000156030.j	ENSGT00390000001787	ENSGT00940000156490.b.a	ENSGT00940000163813	ENSGT00390000005939.a.b.a	ENSGT00940000165182.c	ENSGT00940000161589 #24	ENSGT00940000155218.A.d	ENSGT00940000157379 #18	ENSGT00940000159853 #19	ENSGT00940000156010.db #21	ENSGT00390000011620.a.a.b.f #22	ENSGT00940000158073.a #23	ENSGT00940000160902.c.b	ENSGT00390000018730.A.e	ENSGT00940000161930	ENSGT00940000154897.q	ENSGT00510000046470.a.a.b	ENSGT00950000183021.a.b.c	ENSGT00940000158489.a.a	ENSGT00940000156260.c	ENSGT00940000156037.b	ENSGT00940000159490	ENSGT00940000154256.ac	ENSGT00440000033468	ENSGT00390000011466	ENSGT00940000158666.a.b
Lumpfish	MODERN SPECIES	22	syn2a (ENSCLMG00005017371)	VGLL4 (ENSCLMG00005017367)	slc6a1a (ENSCLMG00005017364)	ENSCLMG00005017362	DUSP7 (ENSCLMG00005017361)	ENSCLMG00005017344	spo11 (ENSCLMG00005017339)	bmp7b (ENSCLMG00005017337)	irf10 (ENSCLMG00005017332)	ENSCLMG00005017328	ENSCLMG00005017324 #24	ENSCLMG00005017321	MTG2 (ENSCLMG00005017318) #18	ENSCLMG00005017314 #19	LSM14B (ENSCLMG00005017294) #21	TAF4 (ENSCLMG00005017259) #22	ENSCLMG00005017258 #23	kcnk15 (ENSCLMG00005017257)	ogfr (ENSCLMG00005017255)	ENSCLMG00005017254	ENSCLMG00005017253	prkcbp1l (ENSCLMG00005012877)	zgc:113278 (ENSCLMG00005012847)	ENSCLMG00005012846	ENSCLMG00005012845	rbm38 (ENSCLMG00005012843)	mipb (ENSCLMG00005012841)	ENSCLMG00005012839	baz2a (ENSCLMG00005012837)	ptges3b (ENSCLMG00005012835)	naca (ENSCLMG00005012817)
Stickleback	MODERN SPECIES	512	slc6a1a (ENSGACG00000015157)	ENSGACG00000015155	ENSGACG00000015148	DUSP7 (ENSGACG00000015141)	ENSGACG00000015138	spo11 (ENSGACG00000015129)	bmp7b (ENSGACG00000015125)	irf10 (ENSGACG00000015123)	ENSGACG00000015121	ENSGACG00000015119	ENSGACG00000015114 #24	ENSGACG00000015110	MTG2 (ENSGACG00000015104) #18	SS18L1 (ENSGACG00000015102) #19	lsm14b (ENSGACG00000015099) #21	TAF4 (ENSGACG00000015092) #22	CDH4 (ENSGACG00000015086) #23
Perciformes_a	ANCESTRAL SPECIES	2	ENSGT00940000156062.n	ENSGT00390000003282.B.e	ENSGT00940000156027.a	ENSGT00940000153541.A	ENSGT00940000157262.m.b	ENSGT00940000156030.j	ENSGT00390000001787	ENSGT00940000156490.b.a	ENSGT00940000163813	ENSGT00390000005939.a.b.a	ENSGT00940000165182.c	ENSGT00940000161589 #24	ENSGT00940000157379 #18	ENSGT00940000159853 #19	ENSGT00940000156010.db #21	ENSGT00390000011620.a.a.b.f #22	ENSGT00940000158073.a #23	ENSGT00940000160902.c.b	ENSGT00390000018730.A.e	ENSGT00940000161930	ENSGT00390000002821	ENSGT00940000155532	ENSGT00940000154897.q	ENSGT00510000046470.a.a.b	ENSGT00950000183021.a.b.c	ENSGT00940000158489.a.a	ENSGT00940000156260.c	ENSGT00940000156037.b	ENSGT00940000159490	ENSGT00940000154256.ac	ENSGT00440000033468
Channel bull blenny	MODERN SPECIES	21	syn2a (ENSCGOG00000018244)	VGLL4 (ENSCGOG00000018227)	slc6a1a (ENSCGOG00000015410)	ENSCGOG00000015327	DUSP7 (ENSCGOG00000015322)	ENSCGOG00000015315	spo11 (ENSCGOG00000015307)	bmp7b (ENSCGOG00000015238)	ENSCGOG00000015232	irf10 (ENSCGOG00000015215)	ENSCGOG00000015211	ENSCGOG00000015209 #24	MTG2 (ENSCGOG00000015183) #18	SS18L1 (ENSCGOG00000015178) #19	lsm14b (ENSCGOG00000015175) #21	TAF4 (ENSCGOG00000015172) #22	CDH4 (ENSCGOG00000012741) #23	kcnk15 (ENSCGOG00000012702)	ogfr (ENSCGOG00000012700)	col9a3 (ENSCGOG00000012696)	ENSCGOG00000012695	ENSCGOG00000012692	prkcbp1l (ENSCGOG00000010252)	zgc:113278 (ENSCGOG00000009829)	ENSCGOG00000009798	NCOA3 (ENSCGOG00000009790)	rbm38 (ENSCGOG00000009788)	mipb (ENSCGOG00000009722)	ENSCGOG00000009708	baz2a (ENSCGOG00000009253)	ptges3b (ENSCGOG00000009199)
Pike perch	MODERN SPECIES	31	syn2a (ENSSLUG00000002630)	VGLL4 (ENSSLUG00000002747)	slc6a1a (ENSSLUG00000002771)	ENSSLUG00000002843	DUSP7 (ENSSLUG00000002848)	ENSSLUG00000002852	spo11 (ENSSLUG00000002873)	bmp7b (ENSSLUG00000002945)	irf10 (ENSSLUG00000002990)	ENSSLUG00000003021	ENSSLUG00000003028	ENSSLUG00000003044 #24	MTG2 (ENSSLUG00000003074) #18	ENSSLUG00000003090 #19	lsm14b (ENSSLUG00000003099) #21	TAF4 (ENSSLUG00000003116) #22	CDH4 (ENSSLUG00000003193) #23	kcnk15 (ENSSLUG00000003516)	ogfr (ENSSLUG00000003543)	col9a3 (ENSSLUG00000003549)	ENSSLUG00000003594	ENSSLUG00000003600	ENSSLUG00000003606	prkcbp1l (ENSSLUG00000004010)	zgc:113278 (ENSSLUG00000010890)	NCOA3 (ENSSLUG00000010896)	rbm38 (ENSSLUG00000010900)	mipb (ENSSLUG00000010904)	ENSSLUG00000010907	baz2a (ENSSLUG00000010915)	ptges3b (ENSSLUG00000010925)
Ovalentaria	ANCESTRAL SPECIES	6	ENSGT00940000156062.n	ENSGT00390000003282.B.e	ENSGT00940000156027.a	ENSGT00940000153541.A	ENSGT00940000157262.m.b	ENSGT00390000001787	ENSGT00940000156490.b.a	ENSGT00940000163813	ENSGT00390000005939.a.b.a	ENSGT00940000165182.c	ENSGT00940000161589 #24	ENSGT00940000155218.A.d	ENSGT00940000157379 #18	ENSGT00940000159853 #19	ENSGT00940000156010.db #21	ENSGT00390000011620.a.a.b.f #22	ENSGT00940000158073.a #23	ENSGT00990000209425	ENSGT00940000160902.c.b	ENSGT00390000018730.A.e	ENSGT00940000161930	ENSGT00390000002821	ENSGT00940000155532	ENSGT00940000154897.q	ENSGT00510000046470.a.a.b	ENSGT00950000183021.a.b.c	ENSGT00940000158489.a.a	ENSGT00940000156260.c	ENSGT00940000156037.b	ENSGT00940000159490	ENSGT00940000154256.ac
Atherinomorphae	ANCESTRAL SPECIES	3	ENSGT00940000156062.n	ENSGT00390000003282.B.e	ENSGT00940000156027.a	ENSGT00940000153541.A	ENSGT00940000157262.m.b	ENSGT00390000001787	ENSGT00940000156490.b.a	ENSGT00940000163813	ENSGT00390000005939.a.b.a	ENSGT00940000165182.c	ENSGT00940000161589 #24	ENSGT00940000155218.A.d	ENSGT00940000157379 #18	ENSGT00940000159853 #19	ENSGT00940000156010.db #21	ENSGT00390000011620.a.a.b.f #22	ENSGT00940000158073.a #23	ENSGT00990000209425	ENSGT00940000160902.c.b	ENSGT00390000018730.A.e	ENSGT00940000161930	ENSGT00390000002821	ENSGT00940000155532	ENSGT00940000154897.q	ENSGT00510000046470.a.a.b	ENSGT00950000183021.a.b.c	ENSGT00940000158489.a.a	ENSGT00940000156260.c	ENSGT00940000156037.b	ENSGT00940000159490.g	ENSGT01050000247727
Cyprinodontiformes	ANCESTRAL SPECIES	4	ENSGT00940000156062.n	ENSGT00390000003282.B.e	ENSGT00940000156027.a	ENSGT00940000153541.A	ENSGT00940000157262.m.b	ENSGT00390000001787	ENSGT00940000156490.b.a	ENSGT00940000163813	ENSGT00390000005939.a.b.a	ENSGT00940000165182.c	ENSGT00940000161589 #24	ENSGT00940000155218.A.d	ENSGT00940000157379 #18	ENSGT00940000159853 #19	ENSGT00940000156010.db #21	ENSGT00390000011620.a.a.b.f #22	ENSGT00940000158073.a #23	ENSGT00990000209425	ENSGT00940000160902.c.b	ENSGT00390000018730.A.e	ENSGT00940000161930	ENSGT00390000002821	ENSGT00940000155532	ENSGT00940000154897.q	ENSGT00510000046470.a.a.b	ENSGT00950000183021.a.b.c	ENSGT00940000158489.a.a	ENSGT00940000156260.c	ENSGT00940000156037.b	ENSGT00940000159490.g	ENSGT01050000247727
Cyprinodontoidei	ANCESTRAL SPECIES	3	ENSGT00390000003282.B.e	ENSGT00940000156027.a	ENSGT00940000153541.A	ENSGT00940000157262.m.b	ENSGT00390000001787	ENSGT00940000156490.b.a	ENSGT00940000163813	ENSGT00390000005939.a.b.a	ENSGT00940000165182.c	ENSGT00940000161589 #24	ENSGT00940000155218.A.d.c	ENSGT00940000155218.A.d.d	ENSGT00940000157379 #18	ENSGT00940000159853 #19	ENSGT00940000156010.db #21	ENSGT00390000011620.a.a.b.f #22	ENSGT00940000158073.a #23	ENSGT00990000209425	ENSGT00940000160902.c.b	ENSGT00390000018730.A.e	ENSGT00940000161930	ENSGT00390000002821	ENSGT00940000155532	ENSGT00940000154897.q	ENSGT00510000046470.a.a.b	ENSGT00950000183021.a.b.c	ENSGT00940000158489.a.a	ENSGT00940000156260.c	ENSGT00940000156037.b	ENSGT00940000159490.g	ENSGT01050000247727
Poeciliinae	ANCESTRAL SPECIES	2	ENSGT00940000156027.a	ENSGT00940000153541.A	ENSGT00940000157262.m.b	ENSGT00390000001787	ENSGT00940000156490.b.a	ENSGT00940000163813	ENSGT00390000005939.a.b.a	ENSGT00940000165182.c	ENSGT00940000161589.j #24	ENSGT00940000155218.A.d.c	ENSGT00940000155218.A.d.d	ENSGT00940000161589.i #24	ENSGT00940000157379 #18	ENSGT00940000159853 #19	ENSGT00940000156010.db #21	ENSGT00390000011620.a.a.b.f #22	ENSGT00940000158073.a #23	ENSGT00990000209425	ENSGT00940000160902.c.b	ENSGT00390000018730.A.e	ENSGT00940000161930	ENSGT00390000002821	ENSGT00940000155532	ENSGT00940000154897.q	ENSGT00510000046470.a.a.b	ENSGT00950000183021.a.b.c	ENSGT00940000158489.a.a	ENSGT00940000156260.c	ENSGT00940000156037.b	ENSGT00940000159490.g	ENSGT01050000247727
Poecilia	ANCESTRAL SPECIES	14	ENSGT00940000156027.a	ENSGT00940000153541.A	ENSGT00940000157262.m.b	ENSGT00390000001787	ENSGT00940000156490.b.a	ENSGT00940000163813	ENSGT00390000005939.a.b.a	ENSGT00940000165182.c	ENSGT00940000161589.j #24	ENSGT00940000155218.A.d.c	ENSGT00940000155218.A.d.d	ENSGT00940000161589.i #24	ENSGT00940000157379 #18	ENSGT00940000159853 #19	ENSGT00940000156010.db #21	ENSGT00390000011620.a.a.b.f #22	ENSGT00940000158073.a #23	ENSGT00990000209425	ENSGT00940000160902.c.b	ENSGT00390000018730.A.e	ENSGT00940000161930	ENSGT00390000002821	ENSGT00940000155532	ENSGT00940000154897.q	ENSGT00510000046470.a.a.b	ENSGT00950000183021.a.b.c	ENSGT00940000158489.a.a	ENSGT00940000156260.c	ENSGT00940000156037.b	ENSGT00940000159490.g	ENSGT01050000247727
NAME_6	ANCESTRAL SPECIES	42	ENSGT00940000156027.a	ENSGT00940000153541.A	ENSGT00940000157262.m.b	ENSGT00390000001787	ENSGT00940000156490.b.a	ENSGT00940000163813.i	ENSGT00390000005939.a.b.a	ENSGT00940000165182.c	ENSGT00940000161589.j #24	ENSGT00940000155218.A.d.c	ENSGT00940000155218.A.d.d	ENSGT00940000161589.i #24	ENSGT00940000157379 #18	ENSGT00940000159853 #19	ENSGT00940000156010.db #21	ENSGT00390000011620.a.a.b.f #22	ENSGT00940000158073.a #23	ENSGT00940000160902.c.b	ENSGT00390000018730.A.e	ENSGT00940000161930	ENSGT00390000002821	ENSGT00940000155532	ENSGT00940000154897.q	ENSGT00510000046470.a.a.b	ENSGT00950000183021.a.b.c	ENSGT00940000158489.a.a	ENSGT00940000156260.c	ENSGT00940000156037.b	ENSGT00940000159490.h	ENSGT00940000154256.ac	ENSGT00440000033468
Amazon molly	MODERN SPECIES	440	slc6a1a (ENSPFOG00000009044)	ENSPFOG00000009229	DUSP7 (ENSPFOG00000009304)	spo11 (ENSPFOG00000009343)	bmp7b (ENSPFOG00000009347)	irf10 (ENSPFOG00000009490)	ENSPFOG00000009556	ENSPFOG00000009566	ENSPFOG00000009600 #24	ENSPFOG00000021739	ENSPFOG00000009787	ENSPFOG00000009894 #24	MTG2 (ENSPFOG00000009959) #18	SS18L1 (ENSPFOG00000010044) #19	lsm14b (ENSPFOG00000010163) #21	TAF4 (ENSPFOG00000010171) #22	CDH4 (ENSPFOG00000010273) #23	kcnk15 (ENSPFOG00000010789)	ogfr (ENSPFOG00000010824)	col9a3 (ENSPFOG00000010863)	ENSPFOG00000024328	ENSPFOG00000021714	prkcbp1l (ENSPFOG00000011234)	zgc:113278 (ENSPFOG00000011448)	NCOA3 (ENSPFOG00000011587)	rbm38 (ENSPFOG00000011658)	mipb (ENSPFOG00000011666)	ENSPFOG00000011726	baz2a (ENSPFOG00000011764)	ptges3b (ENSPFOG00000011978)	naca (ENSPFOG00000023414)
Sailfin molly	MODERN SPECIES	57										ENSPLAG00000005900 #24	ENSPLAG00000005871	ENSPLAG00000005845 #24	MTG2 (ENSPLAG00000005825) #18	SS18L1 (ENSPLAG00000005809) #19	LSM14B (ENSPLAG00000005793) #21	TAF4 (ENSPLAG00000005777) #22	CDH4 (ENSPLAG00000005706) #23	kcnk15 (ENSPLAG00000005526)	ogfr (ENSPLAG00000005507)	col9a3 (ENSPLAG00000005488)	ENSPLAG00000005443	ENSPLAG00000005429	prkcbp1l (ENSPLAG00000005362)	zgc:113278 (ENSPLAG00000005272)	NCOA3 (ENSPLAG00000005231)	rbm38 (ENSPLAG00000005218)	mipb (ENSPLAG00000005206)	ENSPLAG00000005157	baz2a (ENSPLAG00000005140)	ptges3b (ENSPLAG00000005125)	naca (ENSPLAG00000005119)
Guppy	MODERN SPECIES	459	syn2a (ENSPREG00000008158)	VGLL4 (ENSPREG00000008150)	slc6a1a (ENSPREG00000008121)	ENSPREG00000008090	DUSP7 (ENSPREG00000008076)	spo11 (ENSPREG00000008058)	bmp7b (ENSPREG00000008041)	irf10 (ENSPREG00000007944)	ENSPREG00000007919	ENSPREG00000007912	ENSPREG00000007880	MTG2 (ENSPREG00000007861) #18	ENSPREG00000007853 #19	ENSPREG00000007828 #21	ENSPREG00000007817 #21	TAF4 (ENSPREG00000007722) #22	CDH4 (ENSPREG00000007680) #23	ENSPREG00000007664	ENSPREG00000007654	kcnk15 (ENSPREG00000007626)	ogfr (ENSPREG00000007614)	ENSPREG00000007590	prkcbp1l (ENSPREG00000007533)	zgc:113278 (ENSPREG00000007503)	NCOA3 (ENSPREG00000007429)	rbm38 (ENSPREG00000007398)	mipb (ENSPREG00000007285)	ENSPREG00000007252	ENSPREG00000007238	ENSPREG00000007227	ENSPREG00000007217
Platyfish	MODERN SPECIES		slc6a1a (ENSXMAG00000017742)	ENSXMAG00000021120	DUSP7 (ENSXMAG00000017789)	spo11 (ENSXMAG00000017799)	bmp7b (ENSXMAG00000017817)	irf10 (ENSXMAG00000017848)	ENSXMAG00000028965	ENSXMAG00000017854	ENSXMAG00000009659 #24	ENSXMAG00000017866	ENSXMAG00000028553	ENSXMAG00000028070 #24	MTG2 (ENSXMAG00000015450) #18	ENSXMAG00000022687 #19	ENSXMAG00000015481 #21	TAF4 (ENSXMAG00000015488) #22	CDH4 (ENSXMAG00000015503) #23	ENSXMAG00000025331	kcnk15 (ENSXMAG00000029082)	ogfr (ENSXMAG00000009958)	col9a3 (ENSXMAG00000009969)	ENSXMAG00000028024	ENSXMAG00000010038	prkcbp1l (ENSXMAG00000010040)	zgc:113278 (ENSXMAG00000010064)	NCOA3 (ENSXMAG00000017470)	rbm38 (ENSXMAG00000023662)	mipb (ENSXMAG00000017461)	ENSXMAG00000017460	baz2a (ENSXMAG00000017451)	ptges3b (ENSXMAG00000017416)
NAME_4	ANCESTRAL SPECIES	101	ENSGT00940000156084	ENSGT00940000156062.n	ENSGT00390000003282.B.e	ENSGT00940000156027.a	ENSGT00940000153541.A	ENSGT00940000157262.m.b	ENSGT00390000001787	ENSGT00940000156490.b.a	ENSGT00940000163813	ENSGT00390000005939.a.b.a	ENSGT00940000165182.c	ENSGT00940000161589 #24	ENSGT00940000157379 #18	ENSGT00940000159853 #19	ENSGT00940000156010.db #21	ENSGT00390000011620.a.a.b.f #22	ENSGT00940000158073.a #23
Mummichog	MODERN SPECIES	2287	DUSP7 (ENSFHEG00000003116)	spo11 (ENSFHEG00000003166)	bmp7b (ENSFHEG00000003184)	irf10 (ENSFHEG00000003215)	ENSFHEG00000003223	ENSFHEG00000003233	ENSFHEG00000003248 #24	ENSFHEG00000003262 #24	ENSFHEG00000003272 #24	ENSFHEG00000003284	ENSFHEG00000003306 #24	ENSFHEG00000003333 #24	MTG2 (ENSFHEG00000003346) #18	ENSFHEG00000003356 #19	LSM14B (ENSFHEG00000003362) #21	TAF4 (ENSFHEG00000003378) #22	CDH4 (ENSFHEG00000003523) #23
Sheepshead minnow	MODERN SPECIES	320	VGLL4 (ENSCVAG00000012712)	slc6a1a (ENSCVAG00000012675)	ENSCVAG00000012631	DUSP7 (ENSCVAG00000012607)	spo11 (ENSCVAG00000012572)	bmp7b (ENSCVAG00000012517)	irf10 (ENSCVAG00000012497)	ENSCVAG00000012483	ENSCVAG00000000663	ENSCVAG00000012464 #24	MTG2 (ENSCVAG00000012457) #18	SS18L1 (ENSCVAG00000012450) #19	ENSCVAG00000012444 #19	ENSCVAG00000012433 #21	ENSCVAG00000012411 #21	TAF4 (ENSCVAG00000012402) #22	CDH4 (ENSCVAG00000012370) #23
Aplocheiloidei	ANCESTRAL SPECIES		ENSGT00940000156062.n	ENSGT00390000003282.B.e	ENSGT00940000156027.a	ENSGT00940000153541.A	ENSGT00940000157262.m.b	ENSGT00390000001787	ENSGT00940000156490.b.a	ENSGT00940000163813	ENSGT00390000005939.a.b.a	ENSGT00940000165182.c	ENSGT00940000161589 #24	ENSGT00940000155218.A.d	ENSGT00940000157379 #18	ENSGT00940000159853 #19	ENSGT00940000156010.db #21	ENSGT00390000011620.a.a.b.f #22	ENSGT00940000158073.a #23	ENSGT00940000160902.c.b	ENSGT00390000018730.A.e	ENSGT00940000161930	ENSGT00940000154897.q	ENSGT00510000046470.a.a.b	ENSGT00950000183021.a.b.c	ENSGT00940000158489.a.a	ENSGT00940000156260.c	ENSGT00940000156037.b	ENSGT00940000159490.h	ENSGT00940000154256.ac	ENSGT00440000033468	ENSGT00390000011466	ENSGT00940000158666.a.b
Mangrove rivulus	MODERN SPECIES	13	slc6a1a (ENSKMAG00000013502)	ENSKMAG00000013462	DUSP7 (ENSKMAG00000013438)	spo11 (ENSKMAG00000013368)	bmp7b (ENSKMAG00000013338)	irf10 (ENSKMAG00000013286)	ENSKMAG00000013261	ENSKMAG00000013243	ENSKMAG00000013217 #24	ENSKMAG00000012982	MTG2 (ENSKMAG00000012885) #18	ENSKMAG00000012873	ENSKMAG00000012859 #19	ENSKMAG00000012850 #21	ENSKMAG00000012834 #21	TAF4 (ENSKMAG00000012754) #22	CDH4 (ENSKMAG00000012691) #23	kcnk15 (ENSKMAG00000012670)	ogfr (ENSKMAG00000012656)	col9a3 (ENSKMAG00000012601)	ENSKMAG00000012559	prkcbp1l (ENSKMAG00000012490)	zgc:113278 (ENSKMAG00000012450)	NCOA3 (ENSKMAG00000012422)	rbm38 (ENSKMAG00000012402)	mipb (ENSKMAG00000012388)	ENSKMAG00000012365	baz2a (ENSKMAG00000012331)	ptges3b (ENSKMAG00000012312)	naca (ENSKMAG00000012234)	prim1 (ENSKMAG00000012150)
Oryzias	ANCESTRAL SPECIES	4	ENSGT00940000156062.n	ENSGT00390000003282.B.e	ENSGT00940000156027.a	ENSGT00940000153541.A	ENSGT00940000157262.m.b	ENSGT00390000001787	ENSGT00940000156490.b.a	ENSGT00940000163813	ENSGT00390000005939.a.b.a	ENSGT00940000165182.c	ENSGT00940000161589.l #24	ENSGT00940000155218.A.d	ENSGT00940000157379 #18	ENSGT00940000159853 #19	ENSGT00940000156010.db #21	ENSGT00390000011620.a.a.b.f #22	ENSGT00940000158073.a #23	ENSGT00940000160902.c.b	ENSGT00390000018730.A.e	ENSGT00940000161930	ENSGT00390000002821	ENSGT00940000155532	ENSGT00940000154897.q	ENSGT00510000046470.a.a.b	ENSGT00950000183021.a.b.c	ENSGT00940000158489.a.a	ENSGT00940000156260.c	ENSGT00940000156037.b	ENSGT00940000159490.h	ENSGT00940000154256.ac	ENSGT00440000033468
Oryzias_a	ANCESTRAL SPECIES		ENSGT00940000156062.n	ENSGT00390000003282.B.e	ENSGT00940000156027.a	ENSGT00940000153541.A	ENSGT00940000157262.m.b	ENSGT00390000001787	ENSGT00940000156490.b.a	ENSGT00940000163813	ENSGT00390000005939.a.b.a	ENSGT00940000165182.c	ENSGT00940000161589.l.a #24	ENSGT00940000155218.A.d	ENSGT00940000157379 #18	ENSGT00940000159853 #19	ENSGT00940000156010.db #21	ENSGT00390000011620.a.a.b.f #22	ENSGT00940000158073.a #23	ENSGT00940000160902.c.b	ENSGT00390000018730.A.e	ENSGT00940000161930	ENSGT00390000002821	ENSGT00940000155532	ENSGT00940000154897.q	ENSGT00510000046470.a.a.b	ENSGT00950000183021.a.b.c	ENSGT00940000158489.a.a	ENSGT00940000156260.c	ENSGT00940000156037.b	ENSGT00940000159490.h	ENSGT00940000154256.ac	ENSGT00440000033468
Japanese Medaka HdrR	MODERN SPECIES	21	ENSORLG00000011642	spo11 (ENSORLG00000011654)	bmp7b (ENSORLG00000011720)	irf10 (ENSORLG00000011745)	ENSORLG00000025783	ENSORLG00000023244	ENSORLG00000024787 #24	ENSORLG00000026260	ENSORLG00000028288	ENSORLG00000022337 #24	ENSORLG00000011759 #24	ENSORLG00000011784	MTG2 (ENSORLG00000011791) #18	SS18L1 (ENSORLG00000011806) #19	LSM14B (ENSORLG00000028353) #21	TAF4 (ENSORLG00000011854) #22	CDH4 (ENSORLG00000011866) #23	ENSORLG00000028947	kcnk15 (ENSORLG00000011872)	ogfr (ENSORLG00000028407)	col9a3 (ENSORLG00000011918)	ENSORLG00000028905	ENSORLG00000011946	prkcbp1l (ENSORLG00000012040)	zgc:113278 (ENSORLG00000012075)	NCOA3 (ENSORLG00000012143)	rbm38 (ENSORLG00000012154)	mipb (ENSORLG00000012169)	ENSORLG00000028732	baz2a (ENSORLG00000012214)	ptges3b (ENSORLG00000012236)
Chinese medaka	MODERN SPECIES	98	syn2a (ENSOSIG00000000496)	VGLL4 (ENSOSIG00000000954)	slc6a1a (ENSOSIG00000001003)	ENSOSIG00000006484	DUSP7 (ENSOSIG00000006493)	spo11 (ENSOSIG00000006498)	bmp7b (ENSOSIG00000006601)	irf10 (ENSOSIG00000006636)	ENSOSIG00000006639	ENSOSIG00000006642	ENSOSIG00000006648 #24	ENSOSIG00000006655	MTG2 (ENSOSIG00000006658) #18	SS18L1 (ENSOSIG00000006660) #19	LSM14B (ENSOSIG00000006662) #21	TAF4 (ENSOSIG00000006667) #22	CDH4 (ENSOSIG00000006682) #23
Oryzias_b	ANCESTRAL SPECIES	2	ENSGT00390000003282.B.e	ENSGT00940000156027.a	ENSGT00940000153541.A	ENSGT00940000157262.m.b	ENSGT00390000001787	ENSGT00940000156490.b.a	ENSGT00940000163813	ENSGT00390000005939.a.b.a	ENSGT00940000165182.c	ENSGT00940000161589.l #24	ENSGT00940000161589.k.b #24	ENSGT00940000161589.k.a #24	ENSGT00940000155218.A.d	ENSGT00940000157379 #18	ENSGT00940000156010.db #21	ENSGT00390000011620.a.a.b.f #22	ENSGT00940000158073.a #23	ENSGT00940000160902.c.b	ENSGT00390000018730.A.e	ENSGT00940000161930	ENSGT00390000002821	ENSGT00940000155532	ENSGT00940000154897.q	ENSGT00510000046470.a.a.b	ENSGT00950000183021.a.b.c	ENSGT00940000158489.a.a	ENSGT00940000156260.c	ENSGT00940000156037.b	ENSGT00940000159490.h	ENSGT00940000154256.ac	ENSGT00440000033468
Javanese ricefish	MODERN SPECIES	21	VGLL4 (ENSOJAG00000012101)	slc6a1a (ENSOJAG00000012121)	ENSOJAG00000012274	DUSP7 (ENSOJAG00000012303)	spo11 (ENSOJAG00000012351)	bmp7b (ENSOJAG00000012453)	irf10 (ENSOJAG00000012617)	ENSOJAG00000012623	ENSOJAG00000012627	ENSOJAG00000012635 #24	ENSOJAG00000012648 #24	ENSOJAG00000012822 #24	ENSOJAG00000012868	MTG2 (ENSOJAG00000012886) #18	lsm14b (ENSOJAG00000012894) #21	TAF4 (ENSOJAG00000012903) #22	CDH4 (ENSOJAG00000013014) #23	ENSOJAG00000013573	ENSOJAG00000013579	kcnk15 (ENSOJAG00000013592)	ogfr (ENSOJAG00000013604)	col9a3 (ENSOJAG00000013620)	ENSOJAG00000013732	ENSOJAG00000013748	prkcbp1l (ENSOJAG00000013803)	ENSOJAG00000015511	zgc:113278 (ENSOJAG00000015526)	NCOA3 (ENSOJAG00000015561)	rbm38 (ENSOJAG00000015643)	mipb (ENSOJAG00000015653)	ENSOJAG00000015679
Indian medaka	MODERN SPECIES	23	slc6a1a (ENSOMEG00000007745)	ENSOMEG00000007652	DUSP7 (ENSOMEG00000007613)	spo11 (ENSOMEG00000007582)	bmp7b (ENSOMEG00000007490)	irf10 (ENSOMEG00000007467)	ENSOMEG00000007446	ENSOMEG00000007441	ENSOMEG00000007403 #24	ENSOMEG00000007324 #24	ENSOMEG00000007305 #24	ENSOMEG00000007287	MTG2 (ENSOMEG00000007270) #18	ENSOMEG00000000171 #21	ENSOMEG00000007241 #21	TAF4 (ENSOMEG00000007222) #22	CDH4 (ENSOMEG00000007178) #23	kcnk15 (ENSOMEG00000007122)	ogfr (ENSOMEG00000007111)	col9a3 (ENSOMEG00000000165)	ENSOMEG00000007014	ENSOMEG00000006965	prkcbp1l (ENSOMEG00000006900)	zgc:113278 (ENSOMEG00000006851)	ENSOMEG00000006823	rbm38 (ENSOMEG00000006805)	mipb (ENSOMEG00000006781)	ENSOMEG00000006750	baz2a (ENSOMEG00000006706)	ptges3b (ENSOMEG00000006627)	RND1 (ENSOMEG00000000154)
Ovalentaria_B	ANCESTRAL SPECIES	2	ENSGT00390000003282.B.e	ENSGT00940000156027.a	ENSGT00940000153541.A	ENSGT00940000157262.m.b	ENSGT00940000156030.j	ENSGT00390000001787	ENSGT00940000156490.b.a	ENSGT00940000163813	ENSGT00390000005939.a.b.a	ENSGT00940000165182.c	ENSGT00940000161589 #24	ENSGT00940000155218.A.d	ENSGT00940000157379 #18	ENSGT00940000159853 #19	ENSGT00940000156010.db #21	ENSGT00390000011620.a.a.b.f #22	ENSGT00940000158073.a #23	ENSGT00940000160902.c.b	ENSGT00390000018730.A.e	ENSGT00940000161930	ENSGT00390000002821	ENSGT00940000155532	ENSGT00940000154897.q	ENSGT00510000046470.a.a.b	ENSGT00950000183021.a.b.c	ENSGT00940000158489.a.a	ENSGT00940000156260.c	ENSGT00940000156037.b	ENSGT00940000159490	ENSGT00940000154256.ac	ENSGT00440000033468
Pomacentridae	ANCESTRAL SPECIES	2	ENSGT00390000003282.B.e	ENSGT00940000156027.a	ENSGT00940000153541.A	ENSGT00940000157262.m.b	ENSGT00940000156030.j	ENSGT00390000001787	ENSGT00940000156490.b.a	ENSGT00940000163813	ENSGT00390000005939.a.b.a	ENSGT00940000165182.c	ENSGT00940000161589 #24	ENSGT00940000155218.A.d	ENSGT00940000157379 #18	ENSGT00940000159853 #19	ENSGT00940000156010.db #21	ENSGT00390000011620.a.a.b.f #22	ENSGT00940000158073.a #23	ENSGT00940000160902.c.b	ENSGT00390000018730.A.e	ENSGT00940000161930	ENSGT00390000002821	ENSGT00940000155532	ENSGT00940000154897.q	ENSGT00510000046470.a.a.b	ENSGT00950000183021.a.b.c	ENSGT00940000158489.a.a	ENSGT00940000156260.c	ENSGT00940000156037.b	ENSGT00940000159490	ENSGT00940000154256.ac	ENSGT00440000033468
Pomacentridae_A	ANCESTRAL SPECIES	59	ENSGT00390000003282.B.e	ENSGT00940000156027.a	ENSGT00940000153541.A	ENSGT00940000157262.m.b	ENSGT00940000156030.j	ENSGT00390000001787	ENSGT00940000156490.b.a	ENSGT00940000163813	ENSGT00390000005939.a.b.a	ENSGT00940000165182.c	ENSGT00940000161589 #24	ENSGT00940000155218.A.d	ENSGT00940000157379 #18	ENSGT00940000159853 #19	ENSGT00940000156010.db #21	ENSGT00390000011620.a.a.b.f #22	ENSGT00940000158073.a #23	ENSGT00940000160902.c.b	ENSGT00390000018730.A.e	ENSGT00940000161930	ENSGT00390000002821	ENSGT00940000155532	ENSGT00940000154897.q	ENSGT00510000046470.a.a.b	ENSGT00950000183021.a.b.c	ENSGT00940000158489.a.a	ENSGT00940000156260.c	ENSGT00940000156037.b	ENSGT00940000159490	ENSGT00940000154256.ac	ENSGT00440000033468
Amphiprion	ANCESTRAL SPECIES	77	ENSGT00390000003282.B.e	ENSGT00940000156027.a	ENSGT00940000153541.A	ENSGT00940000157262.m.b	ENSGT00940000156030.j	ENSGT00390000001787	ENSGT00940000156490.b.a	ENSGT00940000163813	ENSGT00390000005939.a.b.a	ENSGT00940000165182.c	ENSGT00940000161589 #24	ENSGT00940000155218.A.d	ENSGT00940000157379 #18	ENSGT00940000159853 #19	ENSGT00940000156010.db #21	ENSGT00390000011620.a.a.b.f #22	ENSGT00940000158073.a #23	ENSGT00940000160902.c.b	ENSGT00390000018730.A.e	ENSGT00940000161930	ENSGT00390000002821	ENSGT00940000155532	ENSGT00940000154897.q	ENSGT00510000046470.a.a.b	ENSGT00950000183021.a.b.c	ENSGT00940000158489.a.a	ENSGT00940000156260.c	ENSGT00940000156037.b	ENSGT00940000159490	ENSGT00940000154256.ac	ENSGT00440000033468
Clown anemonefish	MODERN SPECIES	3397	VGLL4 (ENSAOCG00000006994)	slc6a1a (ENSAOCG00000006978)	ENSAOCG00000006927	DUSP7 (ENSAOCG00000006917)	ENSAOCG00000006909	spo11 (ENSAOCG00000006884)	bmp7b (ENSAOCG00000006837)	irf10 (ENSAOCG00000006804)	ENSAOCG00000006788	ENSAOCG00000006782	ENSAOCG00000006767 #24	ENSAOCG00000006719	MTG2 (ENSAOCG00000006709) #18	SS18L1 (ENSAOCG00000006696) #19	lsm14b (ENSAOCG00000006667) #21	TAF4 (ENSAOCG00000006652) #22
Orange clownfish	MODERN SPECIES	22	syn2a (ENSAPEG00000014339)	VGLL4 (ENSAPEG00000014321)	slc6a1a (ENSAPEG00000014269)	ENSAPEG00000014232	DUSP7 (ENSAPEG00000014224)	ENSAPEG00000014190	spo11 (ENSAPEG00000014057)	bmp7b (ENSAPEG00000013999)	irf10 (ENSAPEG00000013982)	ENSAPEG00000013961	ENSAPEG00000013941	ENSAPEG00000013856 #24	MTG2 (ENSAPEG00000013840) #18	SS18L1 (ENSAPEG00000013802) #19	ENSAPEG00000013779 #21	TAF4 (ENSAPEG00000013714) #22	CDH4 (ENSAPEG00000013503) #23	kcnk15 (ENSAPEG00000013426)	ogfr (ENSAPEG00000013420)	col9a3 (ENSAPEG00000013325)	ENSAPEG00000013305	ENSAPEG00000013293	prkcbp1l (ENSAPEG00000013260)	zgc:113278 (ENSAPEG00000013249)	NCOA3 (ENSAPEG00000013225)	rbm38 (ENSAPEG00000013137)	mipb (ENSAPEG00000013129)	ENSAPEG00000013107	ENSAPEG00000013083	ENSAPEG00000013068	ptges3b (ENSAPEG00000013037)
Spiny chromis	MODERN SPECIES	533	VGLL4 (ENSAPOG00000010447)	slc6a1a (ENSAPOG00000010425)	ENSAPOG00000010361	DUSP7 (ENSAPOG00000010353)	ENSAPOG00000010344	spo11 (ENSAPOG00000010320)	bmp7b (ENSAPOG00000010229)	irf10 (ENSAPOG00000010188)	ENSAPOG00000010154	ENSAPOG00000010145	ENSAPOG00000010127 #24	MTG2 (ENSAPOG00000010041) #18	SS18L1 (ENSAPOG00000010017) #19	ENSAPOG00000010003 #21	ENSAPOG00000009997 #21	TAF4 (ENSAPOG00000009970) #22
Bicolor damselfish	MODERN SPECIES	1695					spo11 (ENSSPAG00000019066)	bmp7b (ENSSPAG00000019044)	irf10 (ENSSPAG00000018996)	ENSSPAG00000018983	ENSSPAG00000018974	ENSSPAG00000018929 #24	ENSSPAG00000018899	MTG2 (ENSSPAG00000018882) #18	ENSSPAG00000018877 #19	lsm14b (ENSSPAG00000018854) #21	ENSSPAG00000018837 #21	TAF4 (ENSSPAG00000018804) #22
Cichlidae	ANCESTRAL SPECIES		ENSGT00390000003282.B.e	ENSGT00940000156027.a	ENSGT00940000153541.A	ENSGT00940000157262.m.b	ENSGT00940000156030.j	ENSGT00390000001787	ENSGT00940000156490.b.a	ENSGT00940000163813	ENSGT00390000005939.a.b.a	ENSGT00940000165182.c	ENSGT00940000161589 #24	ENSGT00940000155218.A.d	ENSGT00940000157379 #18	ENSGT00940000159853 #19	ENSGT00940000156010.db #21	ENSGT00390000011620.a.a.b.f #22	ENSGT00940000158073.a #23	ENSGT00940000160902.c.b	ENSGT00390000018730.A.e	ENSGT00940000161930	ENSGT00390000002821	ENSGT00940000155532	ENSGT00940000154897.q	ENSGT00510000046470.a.a.b	ENSGT00950000183021.a.b.c	ENSGT00940000158489.a.a	ENSGT00940000156260.c	ENSGT00940000156037.b	ENSGT00940000159490	ENSGT00940000154256.ac	ENSGT00440000033468
Pseudocrenilabrinae	ANCESTRAL SPECIES	5	ENSGT00390000003282.B.e	ENSGT00940000156027.a	ENSGT00940000153541.A	ENSGT00940000157262.m.b	ENSGT00940000156030.j	ENSGT00390000001787	ENSGT00940000156490.b.a	ENSGT00940000163813	ENSGT00390000005939.a.b.a	ENSGT00940000165182.c	ENSGT00940000161589 #24	ENSGT00940000155218.A.d	ENSGT00940000157379 #18	ENSGT00940000159853 #19	ENSGT00940000156010.db #21	ENSGT00390000011620.a.a.b.f #22	ENSGT00940000158073.a #23	ENSGT00940000160902.c.b	ENSGT00390000018730.A.e	ENSGT00940000154897.q	ENSGT00510000046470.a.a.b	ENSGT00950000183021.a.b.c	ENSGT00940000158489.a.a	ENSGT00940000156260.c	ENSGT00940000156037.b	ENSGT00940000159490	ENSGT00940000154256.ac	ENSGT00440000033468	ENSGT00390000011466	ENSGT00940000158666.a.b	ENSGT00940000155606.b
Pseudocrenilabrinae_A	ANCESTRAL SPECIES	18	ENSGT00390000003282.B.e	ENSGT00940000156027.a	ENSGT00940000153541.A	ENSGT00940000157262.m.b	ENSGT00940000156030.j	ENSGT00390000001787	ENSGT00940000156490.b.a	ENSGT00940000163813	ENSGT00390000005939.a.b.a	ENSGT00940000165182.c	ENSGT00940000161589 #24	ENSGT00940000155218.A.d	ENSGT00940000157379 #18	ENSGT00940000159853 #19	ENSGT00940000156010.db #21	ENSGT00390000011620.a.a.b.f #22	ENSGT00940000158073.a #23	ENSGT00940000160902.c.b	ENSGT00390000018730.A.e	ENSGT00940000161930	ENSGT00390000002821	ENSGT00940000154897.q	ENSGT00510000046470.a.a.b	ENSGT00950000183021.a.b.c	ENSGT00940000158489.a.a	ENSGT00940000156260.c	ENSGT00940000156037.b	ENSGT00940000159490	ENSGT00940000154256.ac	ENSGT00440000033468	ENSGT00390000011466
Haplochromini	ANCESTRAL SPECIES	20	ENSGT00390000003282.B.e	ENSGT00940000156027.a	ENSGT00940000153541.A	ENSGT00940000157262.m.b	ENSGT00940000156030.j	ENSGT00390000001787	ENSGT00940000156490.b.a	ENSGT00940000163813	ENSGT00390000005939.a.b.a	ENSGT00940000165182.c	ENSGT00940000161589 #24	ENSGT00940000155218.A.d	ENSGT00940000157379 #18	ENSGT00940000159853 #19	ENSGT00940000156010.db #21	ENSGT00390000011620.a.a.b.f #22	ENSGT00940000158073.a #23	ENSGT00940000160902.c.b	ENSGT00390000018730.A.e	ENSGT00940000161930	ENSGT00390000002821	ENSGT00940000155532	ENSGT00940000154897.q	ENSGT00510000046470.a.a.b	ENSGT00950000183021.a.b.c	ENSGT00940000158489.a.a	ENSGT00940000156260.c	ENSGT00940000156037.b	ENSGT00940000159490	ENSGT00940000154256.ac	ENSGT00440000033468
Haplochromini_A	ANCESTRAL SPECIES	17	ENSGT00940000156062.n	ENSGT00390000003282.B.e	ENSGT00940000156027.a	ENSGT00940000153541.A	ENSGT00940000157262.m.b	ENSGT00940000156030.j	ENSGT00390000001787	ENSGT00940000156490.b.a	ENSGT00940000163813	ENSGT00390000005939.a.b.a	ENSGT00940000165182.c	ENSGT00940000161589 #24	ENSGT00940000157379 #18	ENSGT00940000159853 #19	ENSGT00940000156010.db #21	ENSGT00390000011620.a.a.b.f #22	ENSGT00940000158073.a #23	ENSGT00940000160902.c.b	ENSGT00390000018730.A.e	ENSGT00940000161930	ENSGT00390000002821	ENSGT00940000155532	ENSGT00940000154897.q	ENSGT00510000046470.a.a.b	ENSGT00950000183021.a.b.c	ENSGT00940000158489.a.a	ENSGT00940000156260.c	ENSGT00940000156037.b	ENSGT00940000159490	ENSGT00940000154256.ac	ENSGT00440000033468
P. nyererei	MODERN SPECIES	339							KLHL10 (ENSPNYG00000022280)	spo11 (ENSPNYG00000022272)	bmp7b (ENSPNYG00000021960)	irf10 (ENSPNYG00000021778)	ENSPNYG00000021760	ENSPNYG00000021741 #24	MTG2 (ENSPNYG00000021727) #18	ENSPNYG00000021719 #19	ENSPNYG00000021706 #21	TAF4 (ENSPNYG00000021689) #22	ENSPNYG00000021674	CDH4 (ENSPNYG00000021653) #23	kcnk15 (ENSPNYG00000021593)	ogfr (ENSPNYG00000021562)	col9a3 (ENSPNYG00000021528)	ENSPNYG00000021479	prkcbp1l (ENSPNYG00000021453)	zgc:113278 (ENSPNYG00000021422)	NCOA3 (ENSPNYG00000021400)	rbm38 (ENSPNYG00000021373)	mipb (ENSPNYG00000021274)	ENSPNYG00000021232	ENSPNYG00000021212	ENSPNYG00000021194	ptges3b (ENSPNYG00000021178)
Haplochromini_B	ANCESTRAL SPECIES	14	ENSGT00940000156062.n	ENSGT00390000003282.B.e	ENSGT00940000156027.a	ENSGT00940000153541.A	ENSGT00940000157262.m.b	ENSGT00940000156030.j	ENSGT00390000001787	ENSGT00940000156490.b.a	ENSGT00940000163813	ENSGT00390000005939.a.b.a	ENSGT00940000165182.c	ENSGT00940000161589 #24	ENSGT00940000157379 #18	ENSGT00940000159853 #19	ENSGT00940000156010.db.m #21	ENSGT00390000011620.a.a.b.f #22	ENSGT00940000158073.a #23	ENSGT00940000160902.c.b	ENSGT00390000018730.A.e	ENSGT00940000154897.q	ENSGT00510000046470.a.a.b	ENSGT00950000183021.a.b.c	ENSGT00940000158489.a.a	ENSGT00940000156260.c	ENSGT00940000156037.b	ENSGT00940000159490	ENSGT00940000154256.ac	ENSGT00390000011466	ENSGT00940000158666.a.b	ENSGT00940000155606.b	ENSGT00950000182837.b.a.b
Zebra mbuna	MODERN SPECIES	1103	syn2a (ENSMZEG00005025923)	VGLL4 (ENSMZEG00005025925)	slc6a1a (ENSMZEG00005025927)	ENSMZEG00005025930	DUSP7 (ENSMZEG00005025931)	ENSMZEG00005025936	spo11 (ENSMZEG00005025972)	bmp7b (ENSMZEG00005025985)	irf10 (ENSMZEG00005025986)	ENSMZEG00005025990	ENSMZEG00005025992	ENSMZEG00005025993 #24	MTG2 (ENSMZEG00005025997) #18	SS18L1 (ENSMZEG00005025998) #19	LSM14B (ENSMZEG00005026001) #21	TAF4 (ENSMZEG00005026003) #22	CDH4 (ENSMZEG00005026005) #23	kcnk15 (ENSMZEG00005026009)	ogfr (ENSMZEG00005026010)	col9a3 (ENSMZEG00005026013)	ENSMZEG00005026018	ENSMZEG00005026020	prkcbp1l (ENSMZEG00005026024)	zgc:113278 (ENSMZEG00005026027)	NCOA3 (ENSMZEG00005026031)	rbm38 (ENSMZEG00005026036)	mipb (ENSMZEG00005026040)	ENSMZEG00005026043	baz2a (ENSMZEG00005026049)	ptges3b (ENSMZEG00005026058)	ENSMZEG00005026060
Burton s mouthbrooder	MODERN SPECIES	346										ENSHBUG00000012381	ENSHBUG00000012376 #24	ENSHBUG00000012356	MTG2 (ENSHBUG00000012340) #18	SS18L1 (ENSHBUG00000000346) #19	ENSHBUG00000012323 #21	TAF4 (ENSHBUG00000012310) #22	CDH4 (ENSHBUG00000012301) #23	ENSHBUG00000012242	kcnk15 (ENSHBUG00000012226)	ogfr (ENSHBUG00000012216)	col9a3 (ENSHBUG00000012207)	ENSHBUG00000012134	prkcbp1l (ENSHBUG00000012117)	zgc:113278 (ENSHBUG00000012081)	NCOA3 (ENSHBUG00000012067)	rbm38 (ENSHBUG00000012058)	mipb (ENSHBUG00000012019)	ENSHBUG00000012010	baz2a (ENSHBUG00000011999)	ptges3b (ENSHBUG00000011995)	ENSHBUG00000011988
Lyretail cichlid	MODERN SPECIES	334	cnbpa (ENSNBRG00000022113)	raf1a (ENSNBRG00000022128)	syn2a (ENSNBRG00000022172)	VGLL4 (ENSNBRG00000022196)	slc6a1a (ENSNBRG00000022219)	ENSNBRG00000022240	DUSP7 (ENSNBRG00000022256)	ENSNBRG00000022260	spo11 (ENSNBRG00000022278)	bmp7b (ENSNBRG00000022300)	irf10 (ENSNBRG00000022314)	ENSNBRG00000022326 #24	MTG2 (ENSNBRG00000022342) #18	ENSNBRG00000022365 #19	ENSNBRG00000022370 #21	TAF4 (ENSNBRG00000022380) #22	CDH4 (ENSNBRG00000022425) #23	kcnk15 (ENSNBRG00000022515)	ogfr (ENSNBRG00000022529)	col9a3 (ENSNBRG00000022551)	ENSNBRG00000022599	prkcbp1l (ENSNBRG00000022618)	zgc:113278 (ENSNBRG00000022643)	ENSNBRG00000022659	ENSNBRG00000022671	rbm38 (ENSNBRG00000022685)	mipb (ENSNBRG00000022736)	ENSNBRG00000022808	ENSNBRG00000022823	ENSNBRG00000022838	ptges3b (ENSNBRG00000022841)
Nile tilapia	MODERN SPECIES	12	slc6a1a (ENSONIG00000017160)	ENSONIG00000017159	ENSONIG00000040172	spo11 (ENSONIG00000017154)	DUSP7 (ENSONIG00000017157)	bmp7b (ENSONIG00000017150)	irf10 (ENSONIG00000017148)	ENSONIG00000035271	ENSONIG00000017146 #24	ENSONIG00000017145	ENSONIG00000017132 #24	ENSONIG00000038637	ENSONIG00000041254	MTG2 (ENSONIG00000017130) #18	lsm14b (ENSONIG00000037640) #21	TAF4 (ENSONIG00000017122) #22	CDH4 (ENSONIG00000017111) #23	kcnk15 (ENSONIG00000029925)	ogfr (ENSONIG00000017108)	col9a3 (ENSONIG00000017095)	ENSONIG00000034167	ENSONIG00000039814	prkcbp1l (ENSONIG00000017087)	zgc:113278 (ENSONIG00000017081)	NCOA3 (ENSONIG00000017075)	rbm38 (ENSONIG00000017073)	mipb (ENSONIG00000029660)	ENSONIG00000035177	baz2a (ENSONIG00000017063)	ptges3b (ENSONIG00000029831)	naca (ENSONIG00000017056)
Midas cichlid	MODERN SPECIES	732	VGLL4 (ENSACIG00000003459)	slc6a1a (ENSACIG00000003423)	ENSACIG00000003407	DUSP7 (ENSACIG00000003348)	ENSACIG00000003311	spo11 (ENSACIG00000003282)	ENSACIG00000003270	bmp7b (ENSACIG00000003253)	irf10 (ENSACIG00000003233)	ENSACIG00000003220	ENSACIG00000003197 #24	MTG2 (ENSACIG00000003178) #18	ENSACIG00000003167 #19	LSM14B (ENSACIG00000003147) #21	ENSACIG00000003134 #21	TAF4 (ENSACIG00000003098) #22	CDH4 (ENSACIG00000002869) #23
Cod	MODERN SPECIES		syn2a (ENSGMOG00000016959)	ENSGMOG00000023206	slc6a1a (ENSGMOG00000002873)	ENSGMOG00000002857	ENSGMOG00000002844	ENSGMOG00000002805	ENSGMOG00000002782	ENSGMOG00000002761	ENSGMOG00000002737	ENSGMOG00000036169	ENSGMOG00000024498	ENSGMOG00000002661 #24	ENSGMOG00000002622	MTG2 (ENSGMOG00000002601) #18	ENSGMOG00000027726 #21	TAF4 (ENSGMOG00000002528) #22	CDH4 (ENSGMOG00000002481) #23	kcnk15 (ENSGMOG00000036247)	ENSGMOG00000036566	ENSGMOG00000013870	ENSGMOG00000013901	ENSGMOG00000027736	ENSGMOG00000014051	ENSGMOG00000014105	ENSGMOG00000016251	ENSGMOG00000029410	PRIM1 (ENSGMOG00000001218)	ENSGMOG00000001195	PTGES3 (ENSGMOG00000001184)	BAZ2A (ENSGMOG00000001100)	RND1 (ENSGMOG00000029984)
Protacanthopterygii	ANCESTRAL SPECIES	37	ENSGT00940000157262.m.b	ENSGT00940000156030.j	ENSGT00940000166256	ENSGT00390000001787	ENSGT00940000156490.b.a	ENSGT00940000163813	ENSGT00390000005939.a.b.a	ENSGT00940000165182.c	ENSGT00940000161589 #24	ENSGT00940000155218.A.d	ENSGT00740000116961	ENSGT00940000157379 #18	ENSGT00940000159853 #19	ENSGT00940000159695 #20	ENSGT00940000156010.db #21	ENSGT00390000011620.a.a.b.f #22	ENSGT00940000158073.a #23	ENSGT00940000167904	ENSGT00940000160902.c.b	ENSGT00390000018730.A.e	ENSGT00940000161930	ENSGT00390000002821	ENSGT00940000181232
Salmoninae	DUPLICATION
Salmoninae	ANCESTRAL SPECIES	50	ENSGT00940000156062.n.c	ENSGT00390000003282.B.e.a	ENSGT00940000156027.a.e	ENSGT00940000153541.A.d	ENSGT00940000157262.m.b.a	ENSGT00990000211061	ENSGT00940000156490.b.a.c	ENSGT00940000163813.k	ENSGT00390000005939.a.b.a.a	ENSGT00940000161589.q #24	ENSGT00940000155218.A.d	ENSGT00740000116961.a	ENSGT00940000157379.l.a #18	ENSGT00940000159853.c #19	ENSGT00940000160354.j.b	ENSGT00390000011620.a.a.b.f.a #22	ENSGT00940000158073.a.a #23	ENSGT00940000160902.c.b.b	ENSGT00390000018730.A.e.c	ENSGT00940000161930	ENSGT00940000155532.ud.a	ENSGT00940000154897.q.e	ENSGT00510000046470.a.a.b.d	ENSGT00950000183021.a.b.c.g	ENSGT00940000158489.a.a.c.a	ENSGT00940000156260.c.b	ENSGT00940000156037.b	ENSGT00940000159490.e	ENSGT00390000011466.e.b	ENSGT00940000158666.a.a.b.a	ENSGT00940000155606.a.a.a
Salmoninae_a	ANCESTRAL SPECIES	15	ENSGT00940000156062.n.c	ENSGT00390000003282.B.e.a	ENSGT00940000156027.a.e	ENSGT00940000153541.A.d	ENSGT00940000157262.m.b.a	ENSGT00990000211061	ENSGT00940000156490.b.a.c	ENSGT00940000163813.k	ENSGT00390000005939.a.b.a.a	ENSGT00940000161589.q #24	ENSGT00940000155218.A.d	ENSGT00740000116961.a	ENSGT00940000157379.l.a #18	ENSGT00940000159853.c #19	ENSGT00940000160354.j.b	ENSGT00390000011620.a.a.b.f.a #22	ENSGT00940000158073.a.a #23	ENSGT00940000160902.c.b.b	ENSGT00390000018730.A.e.c	ENSGT00940000161930	ENSGT00940000155532.ud.a	ENSGT00940000154897.q.e	ENSGT00510000046470.a.a.b.d	ENSGT00950000183021.a.b.c.g	ENSGT00940000158489.a.a.c.a	ENSGT00940000156260.c.b	ENSGT00940000156037.b	ENSGT00940000159490.e	ENSGT00390000011466.e.b	ENSGT00940000158666.a.a.b.a	ENSGT00940000155606.a.a.a
Oncorhynchus	ANCESTRAL SPECIES	5	ENSGT00940000156084.a.a	ENSGT00940000158273.m.a	ENSGT00940000156062.n.c	ENSGT00390000003282.B.e.a	ENSGT00940000156027.a.e	ENSGT00940000153541.A.d	ENSGT00940000157262.m.b.a	ENSGT00940000156490.b.a.c	ENSGT00940000163813.k	ENSGT00390000005939.a.b.a.a	ENSGT00940000161589.q #24	ENSGT00940000155218.A.d	ENSGT00940000157379.l.a #18	ENSGT00940000159853.c #19	ENSGT00940000167759	ENSGT00390000011620.a.a.b.f.a #22	ENSGT00940000158073.a.a #23	ENSGT00940000160902.c.b.b.b	ENSGT00940000160902.c.b.b.a	ENSGT00390000018730.A.e.c	ENSGT00940000161930	ENSGT00940000154897.q.e	ENSGT00510000046470.a.a.b.d	ENSGT00950000183021.a.b.c.g	ENSGT00940000158489.a.a.c.a	ENSGT00940000156260.c.b	ENSGT00940000156037.b	ENSGT00940000159490.e	ENSGT00940000154256.ac.c	ENSGT00440000033468.k.a.b	ENSGT00390000011466.e.a
Oncorhynchus_a	ANCESTRAL SPECIES	7	ENSGT00940000156084.a.a	ENSGT00940000158273.m.a	ENSGT00940000156062.n.c	ENSGT00390000003282.B.e.a	ENSGT00940000156027.a.e	ENSGT00940000153541.A.d	ENSGT00940000157262.m.b.a	ENSGT00940000156490.b.a.c	ENSGT00940000163813.k	ENSGT00390000005939.a.b.a.a	ENSGT00940000161589.q #24	ENSGT00940000155218.A.d	ENSGT00740000116961.a	ENSGT00940000159853.c #19	ENSGT00940000167759	ENSGT00390000011620.a.a.b.f.a #22	ENSGT00940000158073.a.a #23	ENSGT00940000160902.c.b.b.a	ENSGT00390000018730.A.e.c	ENSGT00940000161930	ENSGT00940000154897.q.e	ENSGT00510000046470.a.a.b.d	ENSGT00950000183021.a.b.c.g	ENSGT00940000158489.a.a.c.a	ENSGT00940000156260.c.b	ENSGT00940000156037.b	ENSGT00940000159490.e	ENSGT00940000154256.ac.c	ENSGT00440000033468.k.a.b	ENSGT00390000011466.e.a	ENSGT00940000158666.a.a.b.a
Coho salmon	MODERN SPECIES	8	syn2a (ENSOKIG00005005639)	VGLL4 (ENSOKIG00005007344)	slc6a1a (ENSOKIG00005007368)	ENSOKIG00005007471	DUSP7 (ENSOKIG00005007491)	ENSOKIG00005007514	bmp7b (ENSOKIG00005007536)	ENSOKIG00005007548	ENSOKIG00005007564	ENSOKIG00005007571 #24	ENSOKIG00005007612	ENSOKIG00005007634	ENSOKIG00005007653	SS18L1 (ENSOKIG00005007666) #19	ENSOKIG00005007723	TAF4 (ENSOKIG00005007756) #22	CDH4 (ENSOKIG00005007931) #23	ENSOKIG00005010355	ENSOKIG00005010362	ENSOKIG00005010365	KCNK15 (ENSOKIG00005010370)	ENSOKIG00005010380	col9a3 (ENSOKIG00005010390)	prkcbp1l (ENSOKIG00005010563)	zgc:113278 (ENSOKIG00005014357)	NCOA3 (ENSOKIG00005014427)	rbm38 (ENSOKIG00005014510)	ENSOKIG00005014516	mipb (ENSOKIG00005014521)	ENSOKIG00005014552	baz2a (ENSOKIG00005014583)
Chinook salmon	MODERN SPECIES	7	RAF1 (ENSOTSG00005011868)	ENSOTSG00005012312	syn2a (ENSOTSG00005012320)	VGLL4 (ENSOTSG00005013268)	slc6a1a (ENSOTSG00005013270)	ENSOTSG00005013323	DUSP7 (ENSOTSG00005013327)	bmp7b (ENSOTSG00005013340)	irf10 (ENSOTSG00005013342)	ENSOTSG00005013343	ENSOTSG00005013346 #24	ENSOTSG00005013349	ENSOTSG00005013350	SS18L1 (ENSOTSG00005013352) #19	PSMA7 (ENSOTSG00005013358) #20	TAF4 (ENSOTSG00005013381) #22	CDH4 (ENSOTSG00005013510) #23	rufy3 (ENSOTSG00005013737)	kcnk15 (ENSOTSG00005013740)	ogfr (ENSOTSG00005013743)	col9a3 (ENSOTSG00005013744)	prkcbp1l (ENSOTSG00005013763)	zgc:113278 (ENSOTSG00005025072)	ENSOTSG00005025073	NCOA3 (ENSOTSG00005025074)	rbm38 (ENSOTSG00005025076)	mipb (ENSOTSG00005025079)	ENSOTSG00005025081	baz2a (ENSOTSG00005025086)	ptges3b (ENSOTSG00005025088)	naca (ENSOTSG00005025089)
Rainbow trout	MODERN SPECIES	30	syn2a (ENSOMYG00000037514)	ENSOMYG00000038214	slc6a1a (ENSOMYG00000038238)	ENSOMYG00000038279	ENSOMYG00000038290	ENSOMYG00000065416	ENSOMYG00000038340	ENSOMYG00000038325	ENSOMYG00000038360 #24	ENSOMYG00000038389	MTG2 (ENSOMYG00000038412) #18	SS18L1 (ENSOMYG00000038431) #19	ENSOMYG00000056500	ENSOMYG00000038478	ENSOMYG00000038494	TAF4 (ENSOMYG00000038530) #22	CDH4 (ENSOMYG00000039422) #23	kcnk15 (ENSOMYG00000065257)	ogfr (ENSOMYG00000060480)	ENSOMYG00000026545	ENSOMYG00000048836	ENSOMYG00000027990	ENSOMYG00000064567	ENSOMYG00000036146	ENSOMYG00000036161	ENSOMYG00000036166	rbm38 (ENSOMYG00000052153)	mipb (ENSOMYG00000036178)	ENSOMYG00000036186	baz2a (ENSOMYG00000036198)	ptges3b (ENSOMYG00000036228)
Salmo	ANCESTRAL SPECIES	39	ENSGT00940000156062.n.c	ENSGT00390000003282.B.e.a	ENSGT00940000156027.a.e	ENSGT00940000153541.A.d	ENSGT00940000157262.m.b.a	ENSGT00990000211061	ENSGT00940000156490.b.a.c	ENSGT00940000163813.k	ENSGT00390000005939.a.b.a.a	ENSGT00940000161589.q #24	ENSGT00940000155218.A.d	ENSGT00740000116961.a	ENSGT00940000157379.l.a #18	ENSGT00940000159853.c #19	ENSGT00940000160354.j.b	ENSGT00390000011620.a.a.b.f.a #22	ENSGT00940000158073.a.a #23	ENSGT00990000209425	ENSGT00940000160902.c.b.b	ENSGT00390000018730.A.e.c	ENSGT00940000161930	ENSGT00940000155532.ud.a	ENSGT00940000154897.q.e	ENSGT00510000046470.a.a.b.d	ENSGT00950000183021.a.b.c.g	ENSGT00940000158489.a.a.c.a	ENSGT00940000156260.c.b	ENSGT00940000156037.b	ENSGT00940000159490.e	ENSGT00940000154256.ac.c	ENSGT00440000033468.k.a.a.a
River trout	MODERN SPECIES	20	slc6a1a (ENSSTUG00000023232)	ENSSTUG00000023300	DUSP7 (ENSSTUG00000023320)	ENSSTUG00000023348	ENSSTUG00000023360	bmp7b (ENSSTUG00000023390)	irf10 (ENSSTUG00000023405)	ENSSTUG00000023429	ENSSTUG00000023432	ENSSTUG00000023444 #24	ENSSTUG00000023470	ENSSTUG00000023533	MTG2 (ENSSTUG00000023556) #18	SS18L1 (ENSSTUG00000023680) #19	ENSSTUG00000023700	TAF4 (ENSSTUG00000023734) #22	CDH4 (ENSSTUG00000023854) #23	ENSSTUG00000027079	ENSSTUG00000027085	kcnk15 (ENSSTUG00000027087)	ogfr (ENSSTUG00000027090)	col9a3 (ENSSTUG00000027107)	ENSSTUG00000027129	prkcbp1l (ENSSTUG00000027241)	zgc:113278 (ENSSTUG00000031197)	NCOA3 (ENSSTUG00000031267)	rbm38 (ENSSTUG00000031302)	mipb (ENSSTUG00000031311)	ENSSTUG00000031337	baz2a (ENSSTUG00000031359)	naca (ENSSTUG00000031545)
Atlantic salmon	MODERN SPECIES	6	ENSSSAG00000089027	slc6a1a (ENSSSAG00000034299)	TNNC1 (ENSSSAG00000036263)	DUS7 (ENSSSAG00000036380)	ENSSSAG00000036866	ENSSSAG00000037152	ENSSSAG00000037663	ENSSSAG00000038413	ENSSSAG00000038288	ENSSSAG00000038989 #24	ENSSSAG00000040049	ENSSSAG00000105660	MTG2 (ENSSSAG00000040162) #18	SS18L1 (ENSSSAG00000095110) #19	PSA7 (ENSSSAG00000040286)	TAF4 (ENSSSAG00000040325) #22	CDH4 (ENSSSAG00000096125) #23	ENSSSAG00000119015	kcnk15 (ENSSSAG00000049673)	ogfr (ENSSSAG00000055938)	ENSSSAG00000049686	ENSSSAG00000103430	ENSSSAG00000055954	ENSSSAG00000086483	ENSSSAG00000056058	ENSSSAG00000064680	ENSSSAG00000045242	ENSSSAG00000117276	ENSSSAG00000064795	rbm38 (ENSSSAG00000103879)	mipb (ENSSSAG00000064885)
Huchen	MODERN SPECIES	138										ENSHHUG00000027496 #24	ENSHHUG00000027506	ENSHHUG00000027512	MTG2 (ENSHHUG00000027520) #18	SS18L1 (ENSHHUG00000027543) #19	ENSHHUG00000027547	TAF4 (ENSHHUG00000027561) #22	CDH4 (ENSHHUG00000027578) #23	kcnk15 (ENSHHUG00000028327)	ogfr (ENSHHUG00000028329)	ENSHHUG00000028331	ENSHHUG00000028332	ENSHHUG00000028333	ENSHHUG00000028334	ENSHHUG00000028335	prkcbp1l (ENSHHUG00000028336)	zgc:113278 (ENSHHUG00000029802)
Salmoninae	ANCESTRAL SPECIES	465	ENSGT00390000003282.B.e.b	ENSGT00940000156027.a.f	ENSGT00940000153541.A.c	ENSGT00940000157262.m.b.b	ENSGT00940000156030.j.j	ENSGT00390000001787	ENSGT00940000156490.b.a.d	ENSGT00940000163813.l	ENSGT00390000005939.a.b.a.b	ENSGT00940000165182.c	ENSGT00940000161589.r #24	ENSGT00940000157379.l.b #18	ENSGT00940000159853.d #19	ENSGT00940000159695 #20	ENSGT00940000156010.db #21	ENSGT00390000011620.a.a.b.f.b #22	ENSGT00940000158073.a.b #23
Salmoninae_a	ANCESTRAL SPECIES	26	ENSGT00940000156027.a.f	ENSGT00940000153541.A.c	ENSGT00940000157262.m.b.b	ENSGT00940000156030.j.j	ENSGT00390000001787	ENSGT00940000156490.b.a.d	ENSGT00940000163813.l	ENSGT00390000005939.a.b.a.b	ENSGT00940000165182.c	ENSGT00940000161589.r #24	ENSGT00740000116961.b	ENSGT00940000157379.l.b #18	ENSGT00940000159853.d #19	ENSGT00940000159695 #20	ENSGT00940000156010.db #21	ENSGT00390000011620.a.a.b.f.b #22	ENSGT00940000158073.a.b #23	ENSGT00940000167904.a	ENSGT00940000160902.c.b.a	ENSGT00390000018730.A.e.d	ENSGT00940000163687	ENSGT00390000002821	ENSGT00940000181232	ENSGT00940000155532.ud.b	ENSGT00940000154897.q.f	ENSGT00510000046470.a.a.b.c	ENSGT00950000183021.a.b.c.h	ENSGT00940000158489.a.a.c.b	ENSGT00940000156260.c.a	ENSGT00940000159490.f	ENSGT00940000154256.ac.d
Salmo	ANCESTRAL SPECIES	4	ENSGT00390000003282.B.e.b	ENSGT00940000156027.a.f	ENSGT00940000153541.A.c	ENSGT00940000157262.m.b.b	ENSGT00940000156030.j.j	ENSGT00390000001787	ENSGT00940000156490.b.a.d	ENSGT00940000163813.l	ENSGT00390000005939.a.b.a.b	ENSGT00940000161589.r #24	ENSGT00740000116961.b	ENSGT00940000157379.l.b #18	ENSGT00940000159853.d #19	ENSGT00940000167759	ENSGT00940000156010.db #21	ENSGT00390000011620.a.a.b.f.b #22	ENSGT00940000158073.a.b #23	ENSGT00940000160902.c.b.a	ENSGT00940000163687	ENSGT00390000002821	ENSGT00940000181232	ENSGT00940000155532.ud.b	ENSGT00940000154897.q.f	ENSGT00510000046470.a.a.b.c	ENSGT00950000183021.a.b.c.h	ENSGT00940000158489.a.a.c.b	ENSGT00940000156260.c.a	ENSGT00940000159490.f	ENSGT00440000033468.k.a.a.b	ENSGT00390000011466.f	ENSGT00940000158666.a.a.b.b
Atlantic salmon	MODERN SPECIES	4	slc6a1a (ENSSSAG00000043626)	ENSSSAG00000044930	ENSSSAG00000044955	ENSSSAG00000044979	ENSSSAG00000045416	ENSSSAG00000087720	ENSSSAG00000121498	ENSSSAG00000082434	ENSSSAG00000084801	ENSSSAG00000045657 #24	y4629 (ENSSSAG00000045699)	mtg2 (ENSSSAG00000045717) #18	SS18L1 (ENSSSAG00000040243) #19	ENSSSAG00000045742	lsm14b (ENSSSAG00000045845) #21	taf4 (ENSSSAG00000045879) #22	ENSSSAG00000109030	CDH4 (ENSSSAG00000094300) #23	ENSSSAG00000049133	ENSSSAG00000119432	ENSSSAG00000086261	COL9A3 (ENSSSAG00000055945)	ENSSSAG00000091903	ENSSSAG00000049704	ENSSSAG00000085802	ENSSSAG00000050085	ENSSSAG00000065224	ENSSSAG00000065912	rbm38 (ENSSSAG00000088600)	mipb (ENSSSAG00000041855)	baz2a (ENSSSAG00000065941)
River trout	MODERN SPECIES	23	ENSSTUG00000004031	VGLL4 (ENSSTUG00000003988)	slc6a1a (ENSSTUG00000003932)	ENSSTUG00000003897	DUSP7 (ENSSTUG00000003870)	ENSSTUG00000003633	spo11 (ENSSTUG00000050338)	bmp7b (ENSSTUG00000050322)	irf10 (ENSSTUG00000050316)	ENSSTUG00000050312	ENSSTUG00000050308 #24	ENSSTUG00000050302	MTG2 (ENSSTUG00000050298) #18	ENSSTUG00000050289	lsm14b (ENSSTUG00000050286) #21	TAF4 (ENSSTUG00000050283) #22	CDH4 (ENSSTUG00000050207) #23	kcnk15 (ENSSTUG00000050192)	COL9A3 (ENSSTUG00000050175)	ENSSTUG00000050171	ENSSTUG00000050164	ZMYND8 (ENSSTUG00000049434)	zgc:113278 (ENSSTUG00000049316)	NCOA3 (ENSSTUG00000049303)	rbm38 (ENSSTUG00000049299)	mipb (ENSSTUG00000049294)	ENSSTUG00000049292	baz2a (ENSSTUG00000049168)	ENSSTUG00000049107	prim1 (ENSSTUG00000049095)	RND1 (ENSSTUG00000049087)
Oncorhynchus	ANCESTRAL SPECIES	7	ENSGT00940000156027.a.f	ENSGT00940000153541.A.c	ENSGT00940000157262.m.b.b	ENSGT00940000156030.j.j	ENSGT00390000001787	ENSGT00940000156490.b.a.d	ENSGT00940000163813.l	ENSGT00390000005939.a.b.a.b	ENSGT00940000165182.c	ENSGT00940000161589.r #24	ENSGT00740000116961.b	ENSGT00940000157379.l.b #18	ENSGT00940000159853.d #19	ENSGT00940000159695 #20	ENSGT00940000156010.db #21	ENSGT00390000011620.a.a.b.f.b #22	ENSGT00940000158073.a.b #23	ENSGT00940000167904.a	ENSGT00940000160902.c.b.a	ENSGT00390000018730.A.e.d	ENSGT00940000163687	ENSGT00390000002821	ENSGT00940000181232	ENSGT00940000155532.ud.b	ENSGT00940000154897.q.f	ENSGT00510000046470.a.a.b.c	ENSGT00950000183021.a.b.c.h	ENSGT00940000158489.a.a.c.b	ENSGT00940000156260.c.a	ENSGT00940000159490.f	ENSGT00940000154256.ac.d
Oncorhynchus_a	ANCESTRAL SPECIES	9	ENSGT00390000003282.B.e.b	ENSGT00940000156027.a.f	ENSGT00940000153541.A.c	ENSGT00940000157262.m.b.b	ENSGT00940000156030.j.j	ENSGT00390000001787	ENSGT00940000156490.b.a.d	ENSGT00940000163813.l	ENSGT00390000005939.a.b.a.b	ENSGT00940000165182.c	ENSGT00940000161589.r #24	ENSGT00940000157379.l.b #18	ENSGT00940000159853.d #19	ENSGT00940000159695.db #20	ENSGT00940000156010.db #21	ENSGT00390000011620.a.a.b.f.b #22	ENSGT00940000158073.a.b #23	ENSGT00940000167904.a	ENSGT00940000160902.c.b.a	ENSGT00390000018730.A.e.d	ENSGT00940000163687	ENSGT00390000002821	ENSGT00940000181232	ENSGT00940000155532.ud.b	ENSGT00940000154897.q.f	ENSGT00510000046470.a.a.b.c	ENSGT00950000183021.a.b.c.h	ENSGT00940000158489.a.a.c.b	ENSGT00940000156260.c.a	ENSGT00940000159490.f	ENSGT00940000154256.ac.d
Chinook salmon	MODERN SPECIES	14	mfge8b (ENSOTSG00005019050)	hapln3 (ENSOTSG00005019046)	ENSOTSG00005019043	PPIP5K1 (ENSOTSG00005019041)	prdm8b (ENSOTSG00005019039)	fgf5 (ENSOTSG00005019036)	ENSOTSG00005015796	irf10 (ENSOTSG00005015790)	ENSOTSG00005015789	ENSOTSG00005015788	ENSOTSG00005015779 #24	ENSOTSG00005015776	SS18L1 (ENSOTSG00005015768) #19	PSMA7 (ENSOTSG00005015767) #20	lsm14b (ENSOTSG00005015766) #21	TAF4 (ENSOTSG00005015738) #22	CDH4 (ENSOTSG00005013894) #23	rbm38 (ENSOTSG00005013880)	NCOA3 (ENSOTSG00005013879)	zgc:113278 (ENSOTSG00005013851)	ZMYND8 (ENSOTSG00005009748)	ENSOTSG00005009727	ENSOTSG00005009724	COL9A3 (ENSOTSG00005009722)	kcnk15 (ENSOTSG00005009718)	ENSOTSG00005009717	mipb (ENSOTSG00005009716)	baz2a (ENSOTSG00005009714)	ptges3b (ENSOTSG00005009713)	ENSOTSG00005009706	RND1 (ENSOTSG00005009704)
Coho salmon	MODERN SPECIES	16	VGLL4 (ENSOKIG00005014895)	slc6a1a (ENSOKIG00005014797)	ENSOKIG00005014774	DUSP7 (ENSOKIG00005014759)	ENSOKIG00005014605	spo11 (ENSOKIG00005014331)	BMP7 (ENSOKIG00005014314)	irf10 (ENSOKIG00005014293)	ENSOKIG00005014289	ENSOKIG00005014287	ENSOKIG00005014273 #24	MTG2 (ENSOKIG00005014255) #18	SS18L1 (ENSOKIG00005014201) #19	PSMA7 (ENSOKIG00005014161) #20	LSM14B (ENSOKIG00005014146) #21	TAF4 (ENSOKIG00005014043) #22	CDH4 (ENSOKIG00005013508) #23	ENSOKIG00005013456	kcnk15 (ENSOKIG00005013434)	ENSOKIG00005013374	COL9A3 (ENSOKIG00005013351)	ENSOKIG00005013339	ENSOKIG00005013326	ENSOKIG00005013311	ZMYND8 (ENSOKIG00005010491)	ENSOKIG00005010344	ENSOKIG00005010338	NCOA3 (ENSOKIG00005010323)	rbm38 (ENSOKIG00005010316)	MIP (ENSOKIG00005010296)	baz2a (ENSOKIG00005010151)
Rainbow trout	MODERN SPECIES	7	ENSOMYG00000047202	ENSOMYG00000047191	ENSOMYG00000047178	ENSOMYG00000047171	IRF10a (ENSOMYG00000047162)	ENSOMYG00000047156	ENSOMYG00000047149	ENSOMYG00000072712	ENSOMYG00000064417	ENSOMYG00000047146 #24	ENSOMYG00000038406	MTG2 (ENSOMYG00000047141) #18	SS18L1 (ENSOMYG00000047136) #19	ENSOMYG00000047133	LSM14B (ENSOMYG00000047131) #21	TAF4 (ENSOMYG00000047125) #22	ENSOMYG00000074002	CDH4 (ENSOMYG00000046953) #23	ENSOMYG00000046829	kcnk15 (ENSOMYG00000052604)	ENSOMYG00000046824	COL9A3 (ENSOMYG00000046803)	TCFL5 (ENSOMYG00000046789)	ENSOMYG00000046765	ENSOMYG00000046649	ENSOMYG00000046450	ENSOMYG00000071369	ENSOMYG00000046420	rbm38 (ENSOMYG00000067358)	mipb (ENSOMYG00000046401)	baz2a (ENSOMYG00000046366)
Huchen	MODERN SPECIES	1012						ENSHHUG00000049825	bmp7b (ENSHHUG00000049753)	irf10 (ENSHHUG00000049731)	ENSHHUG00000049723	ENSHHUG00000049713	ENSHHUG00000049680 #24	MTG2 (ENSHHUG00000049664) #18	SS18L1 (ENSHHUG00000049653) #19	ENSHHUG00000049606	lsm14b (ENSHHUG00000049551) #21	TAF4 (ENSHHUG00000049535) #22	CDH4 (ENSHHUG00000049465) #23
Northern pike	MODERN SPECIES	11	ENSELUG00000016512	bmp7b (ENSELUG00000000624)	irf10 (ENSELUG00000016496)	ENSELUG00000024742	ENSELUG00000016476	ENSELUG00000028265	ENSELUG00000026495 #24	ENSELUG00000016466 #24	ENSELUG00000016448	ENSELUG00000016417	ENSELUG00000016435	MTG2 (ENSELUG00000016399) #18	SS18L1 (ENSELUG00000016375) #19	ENSELUG00000016348	lsm14b (ENSELUG00000016299) #21	TAF4 (ENSELUG00000016276) #22	CDH4 (ENSELUG00000016254) #23	ENSELUG00000034212	kcnk15 (ENSELUG00000016142)	ogfr (ENSELUG00000016123)	col9a3 (ENSELUG00000016066)	ENSELUG00000025183	ENSELUG00000015966	ENSELUG00000015953	prkcbp1l (ENSELUG00000015909)	zgc:113278 (ENSELUG00000015880)	NCOA3 (ENSELUG00000015831)	rbm38 (ENSELUG00000000585)	mipb (ENSELUG00000015746)	ENSELUG00000015734	baz2a (ENSELUG00000015700)
Osteoglossiformes	ANCESTRAL SPECIES	12	ENSGT00940000166842	ENSGT00390000011067.C	ENSGT01050000244841.A.b.b.b.a.a	ENSGT00390000018596.A.a.a	ENSGT01030000235510	ENSGT00940000158931.f	ENSGT00940000158489.a.a	ENSGT00940000158489.b	ENSGT00950000183091.B.b	ENSGT00940000156490.b.b	ENSGT00390000005939.a.b.b	ENSGT00940000163813.g	ENSGT00940000165182.b	ENSGT00940000159853.a.a #19	ENSGT00940000156010.eb #21	ENSGT00390000011620.a.a.b #22	ENSGT00940000158073.c.a #23	ENSGT00940000160902.c.a	ENSGT00390000018730.A.f	ENSGT00390000002821	ENSGT00940000181232	ENSGT00940000154897.s	ENSGT00950000183021.a.b.e	ENSGT00940000156478.d	ENSGT00940000161109	ENSGT00390000007823.ab #7	ENSGT00940000166926	ENSGT00940000164502.a.b	ENSGT00940000156477.d	ENSGT00950000182872.f.a.a.a.b	ENSGT00940000160331.b
Asian bonytongue	MODERN SPECIES	16	st3gal8 (ENSSFOG00015004316)	dynlrb1 (ENSSFOG00015024368)	ENSSFOG00015032996	cidec (ENSSFOG00015004373)	ENSSFOG00015031667	uqcrc1 (ENSSFOG00015025374)	rbm38 (ENSSFOG00015004453)	rae1 (ENSSFOG00015004461)	bmp7a (ENSSFOG00015004476)	irf10 (ENSSFOG00015026713)	ENSSFOG00015004530	SS18L1 (ENSSFOG00015004557) #19	ENSSFOG00015026540	ENSSFOG00015004627 #21	ENSSFOG00015026043	TAF4 (ENSSFOG00015004642) #22	cdh4 (ENSSFOG00015004694) #23	ENSSFOG00015020845	ENSSFOG00015004754	ENSSFOG00015004762	ENSSFOG00015004778	ENSSFOG00015029989	ZMYND8 (ENSSFOG00015004869)	NCOA3 (ENSSFOG00015004921)	HM13 (ENSSFOG00015004935)	id1 (ENSSFOG00015004946)	mrgbp (ENSSFOG00015004958) #7	ENSSFOG00015027112	ENSSFOG00015010846	slc15a2 (ENSSFOG00015005042)	cyp27a3 (ENSSFOG00015028193)
P. kingsleyae	MODERN SPECIES	424												ENSPKIG00000003443	SS18L1 (ENSPKIG00000003373) #19	ENSPKIG00000003337	LSM14B (ENSPKIG00000003275) #21	TAF4 (ENSPKIG00000003214) #22	ENSPKIG00000003189	ENSPKIG00000003165	cdh4 (ENSPKIG00000003132) #23
Spotted gar	MODERN SPECIES	656	rae1 (ENSLOCG00000003469)	spo11 (ENSLOCG00000003490)	bmp7b (ENSLOCG00000003514)	irf10 (ENSLOCG00000003532)	ENSLOCG00000003546	ENSLOCG00000003580	ENSLOCG00000003607 #24	ENSLOCG00000003646	ENSLOCG00000003662	ENSLOCG00000003687	ENSLOCG00000003696	MTG2 (ENSLOCG00000003710) #18	SS18L1 (ENSLOCG00000003723) #19	PSMA7 (ENSLOCG00000003735) #20	lsm14b (ENSLOCG00000003746) #21	TAF4 (ENSLOCG00000003773) #22	cdh4 (ENSLOCG00000003805) #23	kcnk15 (ENSLOCG00000003854)	ogfr (ENSLOCG00000003876)	COL9A3 (ENSLOCG00000003885)	TCFL5 (ENSLOCG00000003908)	DIDO1 (ENSLOCG00000003920)	prkcbp1l (ENSLOCG00000003951)	zgc:113278 (ENSLOCG00000003967)	NCOA3 (ENSLOCG00000003989)	sulf2b (ENSLOCG00000004015)	eef1a2 (ENSLOCG00000004048)	mrgbp (ENSLOCG00000004057) #7	id1 (ENSLOCG00000004086)	hm13 (ENSLOCG00000004095)	arhgap46a (ENSLOCG00000004130)
Reedfish	MODERN SPECIES	1	rae1 (ENSECRG00000008199)	SPO11 (ENSECRG00000008161)	bmp7a (ENSECRG00000008133)	ENSECRG00000008121	irf10 (ENSECRG00000008110)	ENSECRG00000008105	ENSECRG00000008094	ENSECRG00000008086 #24	ENSECRG00000008070	ENSECRG00000008052	ENSECRG00000009917	MTG2 (ENSECRG00000009904) #18	SS18L1 (ENSECRG00000009876) #19	PSMA7 (ENSECRG00000009862) #20	lsm14b (ENSECRG00000009847) #21	TAF4 (ENSECRG00000009735) #22	adrm1 (ENSECRG00000009663) #15	osbpl2b (ENSECRG00000009634) #16	SOGA1 (ENSECRG00000009600)	ENSECRG00000009576	acss2 (ENSECRG00000009543)	ENSECRG00000009523	TP53INP2 (ENSECRG00000009510)	NCOA6 (ENSECRG00000009492)	GGT7 (ENSECRG00000009465)	ENSECRG00000009424	zgc:114123 (ENSECRG00000009398)	top1a (ENSECRG00000009339)	plcg1 (ENSECRG00000009177)	zhx3b (ENSECRG00000009119)	ENSECRG00000009111
Elephant shark	MODERN SPECIES	1622				rtf2 (ENSCMIG00000014978)	ENSCMIG00000014982	tpx2 (ENSCMIG00000014990)	BCL2L2 (ENSCMIG00000015008)	lama5 (ENSCMIG00000015052) #14	adrm1 (ENSCMIG00000015166) #15	osbpl2b (ENSCMIG00000015204) #16	ENSCMIG00000015277	MTG2 (ENSCMIG00000015280) #18	SS18L1 (ENSCMIG00000015284) #19	PSMA7 (ENSCMIG00000015296) #20	lsm14b (ENSCMIG00000015301) #21	TAF4 (ENSCMIG00000015312) #22	mybl2b (ENSCMIG00000015328)	ift52 (ENSCMIG00000015332)	slc2a10 (ENSCMIG00000015343)	eya2 (ENSCMIG00000015428)	prkcbp1l (ENSCMIG00000015695)	zgc:113278 (ENSCMIG00000015732)	NCOA3 (ENSCMIG00000015748)	mafba (ENSCMIG00000015765)	top1a (ENSCMIG00000015776)	ENSCMIG00000015783	PLCG1 (ENSCMIG00000015878)	zhx3b (ENSCMIG00000016018)	dhx35 (ENSCMIG00000016041)	FAM83D (ENSCMIG00000016053)	ENSCMIG00000016061
Gnathostomata	ANCESTRAL SPECIES	90						ENSGT00940000155638	ENSGT00950000182917.b	ENSGT00990000204641	ENSGT00940000155295	ENSGT00940000167019	ENSGT00390000017571	ENSGT00940000163206	ENSGT00940000159287	ENSGT00940000156352	ENSGT00940000160354	ENSGT00390000011620.a.a.a ##22	ENSGT00940000156453.a	ENSGT00510000049120	ENSGT00940000156037.a	ENSGT00940000160563	ENSGT00940000155981	ENSGT01030000234624.a	ENSGT01030000234624.b	ENSGT00940000153229.A.a.b	ENSGT00940000158138	ENSGT00390000000568
Euteleostomi	ANCESTRAL SPECIES	8	ENSGT00390000009127	ENSGT00940000156182	ENSGT00940000153902.a	ENSGT00940000155638	ENSGT00950000182917.b	ENSGT00390000000444	ENSGT00990000204641	ENSGT00940000155295	ENSGT00940000167019	ENSGT00390000017571	ENSGT00940000162118	ENSGT00940000163206.b	ENSGT00940000159287	ENSGT00940000156352	ENSGT00940000160354	ENSGT00390000011620.a.a.a ##22	ENSGT00940000156453.a	ENSGT00510000049120	ENSGT00940000156037.a	ENSGT00940000160563	ENSGT00940000155981	ENSGT01030000234624.a	ENSGT01030000234624.b.a.b	ENSGT01030000234624.b.a.a	ENSGT00940000153229.A.a.b	ENSGT00940000158138	ENSGT01100000263524.B.b.b	ENSGT00390000000568	ENSGT00950000182909.b.a.a	ENSGT00950000183111.b.a	ENSGT00940000156618
Sarcopterygii	ANCESTRAL SPECIES	3	ENSGT00510000048348	ENSGT00940000157008	ENSGT00390000009127	ENSGT00940000156182	ENSGT00940000153902.a	ENSGT00940000155638	ENSGT00950000182917.b	ENSGT00940000155295	ENSGT00940000167019	ENSGT00390000017571	ENSGT00940000162118	ENSGT00940000163206.b	ENSGT00940000159287	ENSGT00940000156352	ENSGT00940000160354	ENSGT00390000011620.a.a.a ##22	ENSGT00940000156453.a	ENSGT00510000049120	ENSGT00940000156037.a	ENSGT00940000160563	ENSGT00940000155981	ENSGT01030000234624.a	ENSGT01030000234624.b.a.b	ENSGT01030000234624.b.a.a	ENSGT00940000153229.A.a.b	ENSGT00940000158138	ENSGT01100000263524.B.b.b	ENSGT00390000000568	ENSGT00950000182909.b.a.a	ENSGT00950000183111.b.a	ENSGT00530000063834.e.a
Tetrapoda	ANCESTRAL SPECIES	1	ENSGT00940000157008	ENSGT00390000009127	ENSGT00940000156182	ENSGT00940000153902.a	ENSGT00940000155638	ENSGT00950000182917.b	ENSGT00940000155295	ENSGT00930000153033	ENSGT00940000167019	ENSGT00390000017571	ENSGT00940000162118	ENSGT00940000163206.b	ENSGT00940000159287	ENSGT00940000156352	ENSGT00940000160354	ENSGT00390000011620.a.a.a ##22	ENSGT00940000156453.a	ENSGT00940000156037.a	ENSGT00940000160563	ENSGT00940000155981	ENSGT01030000234624.a	ENSGT01030000234624.b.a.b	ENSGT01030000234624.b.a.a	ENSGT00940000153229.A.a.b	ENSGT00940000158138	ENSGT01100000263524.B.b.b	ENSGT00390000000568	ENSGT00950000182909.b.a.b	ENSGT00950000182909.b.a.a	ENSGT00950000183111.b.a	ENSGT00530000063834.e.a
Amniota	ANCESTRAL SPECIES	3	ENSGT00390000009127	ENSGT00940000156182	ENSGT00940000153902.a	ENSGT00940000155638	ENSGT00950000182917.b	ENSGT00390000000444	ENSGT00940000155295	ENSGT00930000153033	ENSGT00940000167019	ENSGT00390000017571	ENSGT00940000163206.b	ENSGT00940000162118	ENSGT00940000159287	ENSGT00940000156352	ENSGT00940000160354	ENSGT00390000011620.a.a.a ##22	ENSGT00940000156453.a	ENSGT00940000156037.a	ENSGT00940000160563	ENSGT00940000155981	ENSGT01030000234624.a	ENSGT01030000234624.b.a.b	ENSGT01030000234624.b.a.a	ENSGT00940000153229.A.a.b	ENSGT00940000158138	ENSGT01100000263524.B.b.b	ENSGT00390000000568	ENSGT00950000182909.b.a.b	ENSGT00950000182909.b.a.a	ENSGT00950000183111.b.a	ENSGT00530000063834.e.a
Mammalia	ANCESTRAL SPECIES	3	ENSGT00940000157008	ENSGT00390000009127	ENSGT00940000156182	ENSGT00940000153902.a	ENSGT00940000155638	ENSGT00950000182917.b	ENSGT00390000000444	ENSGT00940000155295	ENSGT00930000153033	ENSGT00940000167019	ENSGT00390000017571	ENSGT00940000162118	ENSGT00940000159287	ENSGT00940000156352	ENSGT00940000160354	ENSGT00390000011620.a.a.a ##22	ENSGT00940000156453.a	ENSGT00940000156037.a	ENSGT00940000160563	ENSGT00940000155981	ENSGT01030000234624.a.a	ENSGT01030000234624.a.b	ENSGT01030000234624.b.a.b.a.b	ENSGT01030000234624.b.a.b.b	ENSGT01030000234624.b.a.b.a.a	ENSGT01030000234624.b.a.a	ENSGT00940000153229.A.a.b	ENSGT00940000158138	ENSGT00390000000568	ENSGT00950000182909.b.a.b	ENSGT00950000182909.b.a.a
Theria	ANCESTRAL SPECIES	7	ENSGT00940000157008	ENSGT00390000009127	ENSGT00940000156182	ENSGT00940000153902.a	ENSGT00940000155638	ENSGT00950000182917.b	ENSGT00390000000444	ENSGT00940000155295	ENSGT00930000153033	ENSGT00940000167019	ENSGT00390000017571	ENSGT00940000162118	ENSGT00940000159287	ENSGT00940000156352	ENSGT00940000160354	ENSGT00390000011620.a.a.a ##22	ENSGT00940000156453.a	ENSGT00940000156037.a	ENSGT00940000160563	ENSGT00940000155981	ENSGT01030000234624.a.a.b	ENSGT01030000234624.a.a.a	ENSGT01030000234624.a.b	ENSGT01030000234624.b.a.b.a.b	ENSGT01030000234624.b.a.b.b	ENSGT01030000234624.b.a.b.a.a	ENSGT01030000234624.b.a.a	ENSGT00940000153229.A.a.b	ENSGT00940000158138	ENSGT00390000000568	ENSGT00950000182909.b.a.b
Marsupialia	ANCESTRAL SPECIES	1	ENSGT00390000009127	ENSGT00940000156182	ENSGT00940000153902.a	ENSGT01030000234522.C.b	ENSGT00940000155638	ENSGT00950000182917.b	ENSGT00390000000444	ENSGT00940000155295	ENSGT00930000153033	ENSGT00940000167019	ENSGT00390000017571	ENSGT00940000162118	ENSGT00940000159287	ENSGT00940000156352	ENSGT00940000160354	ENSGT00390000011620.a.a.a ##22	ENSGT00940000156453.a	ENSGT00940000156037.a	ENSGT00940000160563	ENSGT00940000155981	ENSGT01030000234624.a.a.b	ENSGT01030000234624.a.a.a	ENSGT01030000234624.a.b	ENSGT01030000234624.b.a.b.a.b	ENSGT01030000234624.b.a.b.b	ENSGT01030000234624.b.a.b.a.a	ENSGT01030000234624.b.a.a	ENSGT00940000153229.A.a.b	ENSGT00940000158138	ENSGT00390000000568	ENSGT00950000182909.b.a.b
Marsupialia_b	ANCESTRAL SPECIES	2	ENSGT00940000170513	ENSGT00940000157008	ENSGT00390000009127	ENSGT00940000156182	ENSGT00940000153902.a	ENSGT01030000234522.C.b	ENSGT00940000155638	ENSGT00950000182917.b	ENSGT00390000000444	ENSGT00940000155295	ENSGT00390000017571	ENSGT00940000162118	ENSGT00940000159287	ENSGT00940000156352	ENSGT00940000160354	ENSGT00390000011620.a.a.a ##22	ENSGT00940000156453.a	ENSGT00940000156037.a	ENSGT00940000160563	ENSGT00940000155981	ENSGT01030000234624.a.a.b	ENSGT01030000234624.a.a.a	ENSGT01030000234624.a.b	ENSGT01030000234624.b.a.b.a.b	ENSGT01030000234624.b.a.b.b	ENSGT01030000234624.b.a.b.a.a	ENSGT01030000234624.b.a.a	ENSGT00940000153229.A.a.b	ENSGT00940000158138	ENSGT00390000000568	ENSGT00950000182909.b.a.b
Diprotodontia	ANCESTRAL SPECIES	1	ENSGT00940000170513	ENSGT00940000157008	ENSGT00390000009127	ENSGT00940000156182	ENSGT00940000153902.a	ENSGT01030000234522.C.b	ENSGT00940000155638	ENSGT00950000182917.b	ENSGT00390000000444	ENSGT00940000155295	ENSGT00390000017571	ENSGT00940000162118	ENSGT00940000159287	ENSGT00940000156352	ENSGT00940000160354	ENSGT00390000011620.a.a.a ##22	ENSGT00940000156453.a	ENSGT00940000156037.a	ENSGT00940000160563	ENSGT00940000155981	ENSGT01030000234624.b.a.b.a.b	ENSGT01030000234624.b.a.b.b	ENSGT01030000234624.b.a.b.a.a	ENSGT01030000234624.b.a.a	ENSGT00940000153229.A.a.b	ENSGT00940000158138	ENSGT00390000000568	ENSGT00950000182909.b.a.b	ENSGT00950000182909.b.a.a	ENSGT00950000183111.b.a.c	ENSGT00530000063834.e.a
Diprotodontia_a	ANCESTRAL SPECIES		ENSGT00940000170513	ENSGT00940000157008	ENSGT00390000009127	ENSGT00940000156182	ENSGT00940000153902.a	ENSGT01030000234522.C.b	ENSGT00940000155638	ENSGT00950000182917.b	ENSGT00390000000444	ENSGT00940000155295	ENSGT00390000017571	ENSGT00940000162118	ENSGT00940000159287	ENSGT00940000156352	ENSGT00940000160354	ENSGT00390000011620.a.a.a ##22	ENSGT00940000156453.a	ENSGT00940000156037.a	ENSGT00940000160563	ENSGT00940000155981	ENSGT01030000234624.b.a.b.a.b	ENSGT01030000234624.b.a.b.b	ENSGT01030000234624.b.a.b.a.a	ENSGT01030000234624.b.a.a	ENSGT00940000153229.A.a.b	ENSGT00940000158138	ENSGT00390000000568	ENSGT00950000182909.b.a.b	ENSGT00950000182909.b.a.a	ENSGT00950000183111.b.a.c	ENSGT00530000063834.e.a
Common wonbat	DUPLICATION
Common wonbat	MODERN SPECIES	1199	ENSVURG00010009707	ENSVURG00010009685	ENSVURG00010009660	ENSVURG00010009652	ENSVURG00010009552	ENSVURG00010009516	ENSVURG00010009510	ENSVURG00010009506	ENSVURG00010009471	ENSVURG00010009455	ENSVURG00010009443	ENSVURG00010009420	ENSVURG00010009371	ENSVURG00010009324	ENSVURG00010009291	ENSVURG00010009270 ##22	ENSVURG00010009242	ENSVURG00010009205	ENSVURG00010009195	ENSVURG00010004443	ENSVURG00010004144	ENSVURG00010004116	ENSVURG00010004066	ENSVURG00010004020	ENSVURG00010003861	ENSVURG00010003783	ENSVURG00010003771	ENSVURG00010003731	ENSVURG00010003685	ENSVURG00010003669	ENSVURG00010003666
Common wonbat	MODERN SPECIES	1048	ENSVURG00010023313	ENSVURG00010023319	ENSVURG00010000104	ENSVURG00010000143	ENSVURG00010000388	ENSVURG00010001298	ENSVURG00010001342	ENSVURG00010001349	ENSVURG00010001380	ENSVURG00010001423	ENSVURG00010001456	ENSVURG00010001502	ENSVURG00010001794	ENSVURG00010001937	ENSVURG00010002005	ENSVURG00010002056 ##22	ENSVURG00010002153	ENSVURG00010002223	ENSVURG00010002286	ENSVURG00010002372	ENSVURG00010002401	ENSVURG00010002416	ENSVURG00010002425	ENSVURG00010002437	ENSVURG00010002514	ENSVURG00010002683	ENSVURG00010002752	ENSVURG00010002770	ENSVURG00010002777	ENSVURG00010002825	ENSVURG00010002967
koala	MODERN SPECIES	184	RIOK3 (ENSPCIG00000013991)	RMC1 (ENSPCIG00000013988)	NPC1 (ENSPCIG00000013979)	ANKRD29 (ENSPCIG00000013967)	ENSPCIG00000018053	LAMA3 (ENSPCIG00000023566)	TTC39C (ENSPCIG00000023567)	ENSPCIG00000023578	OSBPL1A (ENSPCIG00000023587)	IMPACT (ENSPCIG00000023600)	ENSPCIG00000024530	ZNF521 (ENSPCIG00000020692)	ENSPCIG00000024795	SS18 (ENSPCIG00000024793)	PSMA8 (ENSPCIG00000024784)	TAF4B (ENSPCIG00000024780) ##22	ENSPCIG00000032661	ENSPCIG00000024772	ENSPCIG00000035998	AQP4 (ENSPCIG00000024767)	CHST9 (ENSPCIG00000006330)
Wallaby	MODERN SPECIES	4869																TAF4B (ENSMEUG00000009323) ##22
Tasmanian devil	MODERN SPECIES		RIOK3 (ENSSHAG00000011854)	RMC1 (ENSSHAG00000031200)	NPC1 (ENSSHAG00000011464)	ANKRD29 (ENSSHAG00000030344)	ENSSHAG00000023619	ENSSHAG00000020485	ENSSHAG00000008451	TTC39C (ENSSHAG00000006605)	ENSSHAG00000006149	OSBPL1A (ENSSHAG00000000429)	IMPACT (ENSSHAG00000030966)	ENSSHAG00000021646	ZNF521 (ENSSHAG00000018217)	SS18 (ENSSHAG00000028851)	PSMA8 (ENSSHAG00000016945)	TAF4B (ENSSHAG00000016570) ##22	KCTD1 (ENSSHAG00000031155)	CHST9 (ENSSHAG00000014819)	ENSSHAG00000025009	AQP4 (ENSSHAG00000014974)	ENSSHAG00000010494	CDH2 (ENSSHAG00000006524)	ENSSHAG00000029202	ENSSHAG00000021841	DSC3 (ENSSHAG00000010085)	DSC2 (ENSSHAG00000009756)	DSC1 (ENSSHAG00000026478)	DSG1 (ENSSHAG00000006939)	DSG4 (ENSSHAG00000006082)	DSG3 (ENSSHAG00000004811)	DSG2 (ENSSHAG00000003295)
Opossum	MODERN SPECIES	2	NPC1 (ENSMODG00000021498)	ANKRD29 (ENSMODG00000021499)	ENSMODG00000021501	LAMA3 (ENSMODG00000021502)	ENSMODG00000042718	ENSMODG00000021505	ENSMODG00000036935	TTC39C (ENSMODG00000021503)	ENSMODG00000036638	IMPACT (ENSMODG00000040981)	ENSMODG00000025619	ENSMODG00000042471	ZNF521 (ENSMODG00000021509)	SS18 (ENSMODG00000021510)	PSMA8 (ENSMODG00000021511)	TAF4B (ENSMODG00000021512) ##22	ENSMODG00000027618	KCTD1 (ENSMODG00000021513)	AQP4 (ENSMODG00000021514)	CHST9 (ENSMODG00000021515)	ENSMODG00000024783	ENSMODG00000044526	ENSMODG00000021517	RAB27B (ENSMODG00000050980)	CCDC68 (ENSMODG00000020457)	ENSMODG00000024788	TCF4 (ENSMODG00000020455)	TXNL1 (ENSMODG00000020454)	WDR7 (ENSMODG00000020452)	ST8SIA3 (ENSMODG00000020449)	ONECUT2 (ENSMODG00000020448)
Eutheria	ANCESTRAL SPECIES	20	ENSGT00510000048348	ENSGT00940000157008	ENSGT00390000009127	ENSGT00940000156182	ENSGT00940000153902.a	ENSGT00940000155638	ENSGT00950000182917.b	ENSGT00390000000444	ENSGT00940000155295	ENSGT00940000167019	ENSGT00390000017571	ENSGT00940000162118	ENSGT00940000159287	ENSGT00940000156352	ENSGT00940000160354	ENSGT00390000011620.a.a.a ##22	ENSGT00940000156453.a	ENSGT00940000156037.a	ENSGT00940000160563	ENSGT00940000155981	ENSGT01030000234624.a.a.b	ENSGT01030000234624.a.a.a	ENSGT01030000234624.a.b	ENSGT01030000234624.b.a.b.a.b	ENSGT01030000234624.b.a.b.b	ENSGT01030000234624.b.a.b.a.a	ENSGT01030000234624.b.a.a	ENSGT00940000153229.A.a.b	ENSGT00940000158138	ENSGT00390000000568	ENSGT00950000182909.b.a.b
Atlantogenata	ANCESTRAL SPECIES	22	ENSGT00400000022086.a ##12	ENSGT00510000048348	ENSGT00940000157008	ENSGT00390000009127	ENSGT00940000156182	ENSGT00940000153902.a	ENSGT00940000155638	ENSGT00950000182917.b	ENSGT00390000000444	ENSGT00940000155295	ENSGT00390000017571	ENSGT00940000162118	ENSGT00940000159287	ENSGT00940000156352	ENSGT00940000160354	ENSGT00390000011620.a.a.a ##22	ENSGT00940000156453.a	ENSGT00940000156037.a	ENSGT00940000160563	ENSGT00940000155981	ENSGT01030000234624.a.a.b	ENSGT01030000234624.a.a.a	ENSGT01030000234624.a.b	ENSGT01030000234624.b.a.b.a.b	ENSGT01030000234624.b.a.b.b	ENSGT01030000234624.b.a.b.a.a	ENSGT01030000234624.b.a.a	ENSGT00940000153229.A.a.b	ENSGT00940000158138	ENSGT00390000000568	ENSGT00950000182909.b.a.b
Afrotheria	ANCESTRAL SPECIES	23	ENSGT00400000022086.a ##12	ENSGT00510000048348	ENSGT00940000157008	ENSGT00390000009127	ENSGT00940000156182	ENSGT00940000153902.a	ENSGT00940000155638	ENSGT00950000182917.b	ENSGT00390000000444	ENSGT00940000155295	ENSGT00390000017571	ENSGT00940000162118	ENSGT00940000159287	ENSGT00940000156352	ENSGT00940000160354	ENSGT00390000011620.a.a.a ##22	ENSGT00940000156453.a	ENSGT00940000156037.a	ENSGT00940000160563	ENSGT00940000155981	ENSGT01030000234624.a.a.b	ENSGT01030000234624.a.a.a	ENSGT01030000234624.a.b	ENSGT01030000234624.b.a.b.a.b	ENSGT01030000234624.b.a.b.b	ENSGT01030000234624.b.a.b.a.a	ENSGT01030000234624.b.a.a	ENSGT00940000153229.A.a.b	ENSGT00940000158138	ENSGT00390000000568	ENSGT00950000182909.b.a.b
Afrotheria_a	ANCESTRAL SPECIES	22	ENSGT00400000022086.a ##12	ENSGT00510000048348	ENSGT00940000157008	ENSGT00390000009127	ENSGT00940000156182	ENSGT00940000153902.a	ENSGT00940000155638	ENSGT00950000182917.b	ENSGT00390000000444	ENSGT00940000155295	ENSGT00390000017571	ENSGT00940000162118	ENSGT00940000159287	ENSGT00940000156352	ENSGT00940000160354	ENSGT00390000011620.a.a.a ##22	ENSGT00940000156453.a	ENSGT00940000156037.a	ENSGT00940000160563	ENSGT00940000155981	ENSGT01030000234624.a.a.b	ENSGT01030000234624.a.a.a	ENSGT01030000234624.a.b	ENSGT01030000234624.b.a.b.a.b	ENSGT01030000234624.b.a.b.b	ENSGT01030000234624.b.a.b.a.a	ENSGT01030000234624.b.a.a	ENSGT00940000153229.A.a.b	ENSGT00940000158138	ENSGT00390000000568	ENSGT00950000182909.b.a.b
Elephant	MODERN SPECIES	375	CABLES1 (ENSLAFG00000017513) ##12	TMEM241 (ENSLAFG00000017889)	RIOK3 (ENSLAFG00000001380)	RMC1 (ENSLAFG00000001383)	NPC1 (ENSLAFG00000023357)	ANKRD29 (ENSLAFG00000015310)	LAMA3 (ENSLAFG00000008275)	TTC39C (ENSLAFG00000008293)	ENSLAFG00000014928	OSBPL1A (ENSLAFG00000014931)	IMPACT (ENSLAFG00000003990)	HRH4 (ENSLAFG00000003994)	ZNF521 (ENSLAFG00000013445)	SS18 (ENSLAFG00000006230)	PSMA8 (ENSLAFG00000000981)	TAF4B (ENSLAFG00000000982) ##22	ENSLAFG00000015479	AQP4 (ENSLAFG00000006158)	CHST9 (ENSLAFG00000006162)	CDH2 (ENSLAFG00000014957)	DSC3 (ENSLAFG00000021823)	DSC2 (ENSLAFG00000006211)	DSC1 (ENSLAFG00000005525)	DSG1 (ENSLAFG00000017709)	DSG4 (ENSLAFG00000017728)	DSG2 (ENSLAFG00000028117)	TTR (ENSLAFG00000014816)	B4GALT6 (ENSLAFG00000018431)	TRAPPC8 (ENSLAFG00000008854)	RNF125 (ENSLAFG00000008839)	RNF138 (ENSLAFG00000003811)
Hyrax	MODERN SPECIES	3074																ENSPCAG00000014020 ##22
Tenrec	MODERN SPECIES	3748																TAF4B (ENSETEG00000011393) ##22
Xenarthra	ANCESTRAL SPECIES	134	ENSGT00400000022086.a ##12	ENSGT00510000048348	ENSGT00940000157008	ENSGT00390000009127	ENSGT00940000156182	ENSGT00940000153902.a	ENSGT00940000155638	ENSGT00950000182917.b	ENSGT00390000000444	ENSGT00940000155295	ENSGT00390000017571	ENSGT00940000162118	ENSGT00940000159287	ENSGT00940000156352	ENSGT00940000160354	ENSGT00390000011620.a.a.a ##22
Armadillo	MODERN SPECIES	2207	TMEM241 (ENSDNOG00000034375)	RIOK3 (ENSDNOG00000039433)	RMC1 (ENSDNOG00000009862)	NPC1 (ENSDNOG00000009884)	ANKRD29 (ENSDNOG00000000204)	LAMA3 (ENSDNOG00000003485)	TTC39C (ENSDNOG00000047226)	CABYR (ENSDNOG00000040624)	OSBPL1A (ENSDNOG00000001431)	IMPACT (ENSDNOG00000033485)	ENSDNOG00000006700	ENSDNOG00000048966	ZNF521 (ENSDNOG00000040834)	SS18 (ENSDNOG00000045501)	PSMA8 (ENSDNOG00000002450)	TAF4B (ENSDNOG00000031698) ##22	ENSDNOG00000040409	KCTD1 (ENSDNOG00000036092)
Sloth	MODERN SPECIES	3441																ENSCHOG00000007830 ##22
Boreoeutheria	ANCESTRAL SPECIES	22	ENSGT00510000048348	ENSGT00940000157008	ENSGT00390000009127	ENSGT00940000156182	ENSGT00940000153902.a	ENSGT00940000155638	ENSGT00950000182917.b	ENSGT00390000000444	ENSGT00940000155295	ENSGT00940000167019	ENSGT00390000017571	ENSGT00940000162118	ENSGT00940000159287	ENSGT00940000156352	ENSGT00940000160354	ENSGT00390000011620.a.a.a ##22	ENSGT00940000156453.a	ENSGT00940000156037.a	ENSGT00940000160563	ENSGT00940000155981	ENSGT01030000234624.a.a.b	ENSGT01030000234624.a.a.a	ENSGT01030000234624.a.b	ENSGT01030000234624.b.a.b.a.b	ENSGT01030000234624.b.a.b.b	ENSGT01030000234624.b.a.b.a.a	ENSGT01030000234624.b.a.a	ENSGT00940000153229.A.a.b	ENSGT00940000158138	ENSGT00390000000568	ENSGT00950000182909.b.a.b
Laurasiatheria	ANCESTRAL SPECIES	23	ENSGT00510000048348	ENSGT00940000157008	ENSGT00390000009127	ENSGT00940000156182	ENSGT00940000153902.a	ENSGT00940000155638	ENSGT00950000182917.b	ENSGT00390000000444	ENSGT00940000155295	ENSGT00940000167019	ENSGT00390000017571	ENSGT00940000162118	ENSGT00940000159287	ENSGT00940000156352	ENSGT00940000160354	ENSGT00390000011620.a.a.a ##22	ENSGT00940000156453.a	ENSGT00940000156037.a	ENSGT00940000160563	ENSGT00940000155981	ENSGT01030000234624.a.a.b	ENSGT01030000234624.a.a.a	ENSGT01030000234624.a.b	ENSGT01030000234624.b.a.b.a.b	ENSGT01030000234624.b.a.b.b	ENSGT01030000234624.b.a.b.a.a	ENSGT01030000234624.b.a.a	ENSGT00940000153229.A.a.b	ENSGT00940000158138	ENSGT00390000000568	ENSGT00950000182909.b.a.b
Eulipotyphla	ANCESTRAL SPECIES																	ENSGT00390000011620.a.a.a ##22
Common shrew	MODERN SPECIES	2932																TAF4B (ENSSARG00000006618) ##22
Laurasiatheria_a	ANCESTRAL SPECIES	13	ENSGT00510000048348	ENSGT00940000157008	ENSGT00390000009127	ENSGT00940000156182	ENSGT00940000153902.a	ENSGT00940000155638	ENSGT00950000182917.b	ENSGT00390000000444	ENSGT00940000155295	ENSGT00940000167019	ENSGT00390000017571	ENSGT00940000162118	ENSGT00940000159287	ENSGT00940000156352	ENSGT00940000160354	ENSGT00390000011620.a.a.a ##22	ENSGT00940000156453.a	ENSGT00940000156037.a	ENSGT00940000160563	ENSGT00940000155981	ENSGT01030000234624.a.a.b	ENSGT01030000234624.a.a.a	ENSGT01030000234624.a.b	ENSGT01030000234624.b.a.b.a.b	ENSGT01030000234624.b.a.b.b	ENSGT01030000234624.b.a.b.a.a	ENSGT01030000234624.b.a.a	ENSGT00940000153229.A.a.b	ENSGT00940000158138	ENSGT00390000000568	ENSGT00950000182909.b.a.b
Artiodactyla	ANCESTRAL SPECIES	17	ENSGT00510000048348	ENSGT00940000157008	ENSGT00390000009127	ENSGT00940000156182	ENSGT00940000153902.a	ENSGT00940000155638	ENSGT00950000182917.b	ENSGT00390000000444	ENSGT00940000155295.p	ENSGT00940000167019	ENSGT00390000017571	ENSGT00940000162118	ENSGT00940000159287	ENSGT00940000156352	ENSGT00940000160354	ENSGT00390000011620.a.a.a ##22	ENSGT00940000156453.a	ENSGT00940000156037.a	ENSGT00940000160563	ENSGT00940000155981	ENSGT01030000234624.a.a.b	ENSGT01030000234624.a.a.a	ENSGT01030000234624.a.b	ENSGT01030000234624.b.a.b.a.b	ENSGT01030000234624.b.a.b.b	ENSGT01030000234624.b.a.b.a.a	ENSGT01030000234624.b.a.a	ENSGT00940000153229.A.a.b	ENSGT00940000158138	ENSGT00390000000568	ENSGT00950000182909.b.a.b
Suina	ANCESTRAL SPECIES	40	ENSGT00400000022086.a ##12	ENSGT00510000048348	ENSGT00940000157008	ENSGT00390000009127	ENSGT00940000156182	ENSGT00940000153902.a	ENSGT00940000155638	ENSGT00950000182917.b	ENSGT00390000000444	ENSGT00940000155295.p	ENSGT00390000017571	ENSGT00940000162118	ENSGT00940000159287	ENSGT00940000156352	ENSGT00940000160354	ENSGT00390000011620.a.a.a ##22	ENSGT00940000156453.a	ENSGT00940000156037.a	ENSGT00940000160563	ENSGT00940000155981	ENSGT01030000234624.a.a.b	ENSGT01030000234624.a.a.a	ENSGT01030000234624.a.b	ENSGT01030000234624.b.a.b.a.b	ENSGT01030000234624.b.a.b.b	ENSGT01030000234624.b.a.b.a.a	ENSGT01030000234624.b.a.a	ENSGT00940000153229.A.a.b	ENSGT00940000158138	ENSGT00390000000568	ENSGT00950000182909.b.a.b
Pig	MODERN SPECIES	14	CABLES1 (ENSSSCG00000003705) ##12	TMEM241 (ENSSSCG00000040452)	RIOK3 (ENSSSCG00000029518)	RMC1 (ENSSSCG00000026851)	NPC1 (ENSSSCG00000003707)	ANKRD29 (ENSSSCG00000003708)	LAMA3 (ENSSSCG00000003709)	TTC39C (ENSSSCG00000003710)	CABYR (ENSSSCG00000003711)	OSBPL1A (ENSSSCG00000003712)	IMPACT (ENSSSCG00000003713)	HRH4 (ENSSSCG00000059661)	ZNF521 (ENSSSCG00000003715)	SS18 (ENSSSCG00000003716)	PSMA8 (ENSSSCG00000003717)	TAF4B (ENSSSCG00000003718) ##22	KCTD1 (ENSSSCG00000003719)	AQP4 (ENSSSCG00000035965)	CHST9 (ENSSSCG00000003721)	ENSSSCG00000045209	CDH2 (ENSSSCG00000003722)	ENSSSCG00000045075	ENSSSCG00000042553	ENSSSCG00000042793	DSC3 (ENSSSCG00000057415)	DSC2 (ENSSSCG00000024800)	DSC1 (ENSSSCG00000003726)	DSG1 (ENSSSCG00000020694)	DSG4 (ENSSSCG00000020740)	DSG3 (ENSSSCG00000027160)	DSG2 (ENSSSCG00000022739)
Chacoan peccary	MODERN SPECIES	862	TMEM241 (ENSCWAG00000005565)	RIOK3 (ENSCWAG00000005515)	RMC1 (ENSCWAG00000005478)	NPC1 (ENSCWAG00000005449)	ANKRD29 (ENSCWAG00000005404)	LAMA3 (ENSCWAG00000004026)	ENSCWAG00000020189	TTC39C (ENSCWAG00000020146)	ENSCWAG00000020085	OSBPL1A (ENSCWAG00000019990)	IMPACT (ENSCWAG00000019973)	HRH4 (ENSCWAG00000019958)	ZNF521 (ENSCWAG00000019923)	SS18 (ENSCWAG00000019844)	PSMA8 (ENSCWAG00000019755)	TAF4B (ENSCWAG00000019686) ##22	KCTD1 (ENSCWAG00000019661)	AQP4 (ENSCWAG00000019645)	CHST9 (ENSCWAG00000019603)	CDH2 (ENSCWAG00000019535)	ENSCWAG00000019494	DSC3 (ENSCWAG00000019325)	DSC2 (ENSCWAG00000019274)	DSC1 (ENSCWAG00000019142)	DSG1 (ENSCWAG00000018793)	DSG4 (ENSCWAG00000018350)	DSG3 (ENSCWAG00000018245)	DSG2 (ENSCWAG00000018119)	TTR (ENSCWAG00000018057)	B4GALT6 (ENSCWAG00000017832)	TRAPPC8 (ENSCWAG00000017730)
Artiodactyla_a	ANCESTRAL SPECIES	17	ENSGT00510000048348	ENSGT00940000157008	ENSGT00390000009127	ENSGT00940000156182	ENSGT00940000153902.a	ENSGT00940000155638	ENSGT00950000182917.b	ENSGT00390000000444	ENSGT00940000155295.p	ENSGT00940000167019	ENSGT00390000017571	ENSGT00940000162118	ENSGT00940000159287	ENSGT00940000156352	ENSGT00940000160354	ENSGT00390000011620.a.a.a ##22	ENSGT00940000156453.a	ENSGT00940000156037.a	ENSGT00940000160563	ENSGT00940000155981	ENSGT01030000234624.a.a.b	ENSGT01030000234624.a.a.a	ENSGT01030000234624.a.b	ENSGT01030000234624.b.a.b.a.b	ENSGT01030000234624.b.a.b.b	ENSGT01030000234624.b.a.b.a.a	ENSGT01030000234624.b.a.a	ENSGT00940000153229.A.a.b	ENSGT00940000158138	ENSGT00390000000568	ENSGT00950000182909.b.a.b
Camelidae	ANCESTRAL SPECIES	11	ENSGT00400000022086.a ##12	ENSGT00510000048348	ENSGT00940000157008	ENSGT00390000009127	ENSGT00940000156182	ENSGT00940000153902.a	ENSGT00940000155638	ENSGT00950000182917.b	ENSGT00390000000444	ENSGT00940000155295.p	ENSGT00390000017571	ENSGT00940000162118	ENSGT00940000159287	ENSGT00940000156352	ENSGT00940000160354	ENSGT00390000011620.a.a.a ##22	ENSGT00940000156453.a	ENSGT00940000156037.a	ENSGT00940000160563	ENSGT00940000155981	ENSGT01030000234624.a.a.b	ENSGT01030000234624.a.a.a	ENSGT01030000234624.a.b	ENSGT01030000234624.b.a.b.a.b	ENSGT01030000234624.b.a.b.b	ENSGT01030000234624.b.a.b.a.a	ENSGT01030000234624.b.a.a	ENSGT00940000153229.A.a.b	ENSGT00940000158138	ENSGT00390000000568	ENSGT00950000182909.b.a.b
Arabian camel	MODERN SPECIES	16	CABLES1 (ENSCDRG00005019795) ##12	TMEM241 (ENSCDRG00005019764)	RIOK3 (ENSCDRG00005019730)	RMC1 (ENSCDRG00005019664)	NPC1 (ENSCDRG00005019635)	ANKRD29 (ENSCDRG00005019608)	LAMA3 (ENSCDRG00005018027)	TTC39C (ENSCDRG00005017842)	CABYR (ENSCDRG00005017825)	OSBPL1A (ENSCDRG00005017640)	IMPACT (ENSCDRG00005017568)	HRH4 (ENSCDRG00005017544)	ZNF521 (ENSCDRG00005017464)	SS18 (ENSCDRG00005017334)	PSMA8 (ENSCDRG00005017287)	TAF4B (ENSCDRG00005017258) ##22	ENSCDRG00005017234	AQP4 (ENSCDRG00005017200)	CHST9 (ENSCDRG00005017144)	CDH2 (ENSCDRG00005017031)	DSC3 (ENSCDRG00005016750)	DSC2 (ENSCDRG00005016676)	DSC1 (ENSCDRG00005016376)	DSG1 (ENSCDRG00005016118)	DSG4 (ENSCDRG00005015973)	DSG3 (ENSCDRG00005015844)	DSG2 (ENSCDRG00005015720)	TTR (ENSCDRG00005015690)	B4GALT6 (ENSCDRG00005015481)	TRAPPC8 (ENSCDRG00005014692)	RNF125 (ENSCDRG00005014604)
Alpaca	MODERN SPECIES	2720													ZNF521 (ENSVPAG00000011339)	SS18 (ENSVPAG00000011342)	PSMA8 (ENSVPAG00000011344)	TAF4B (ENSVPAG00000011346) ##22
Artiodactyla_b	ANCESTRAL SPECIES	10	ENSGT00510000048348	ENSGT00940000157008	ENSGT00390000009127	ENSGT00940000156182	ENSGT00940000153902.a	ENSGT00940000155638	ENSGT00950000182917.b	ENSGT00390000000444	ENSGT00940000155295.p	ENSGT00940000167019	ENSGT00390000017571	ENSGT00940000162118	ENSGT00940000159287	ENSGT00940000156352	ENSGT00940000160354	ENSGT00390000011620.a.a.a ##22	ENSGT00940000156453.a	ENSGT00940000156037.a	ENSGT00940000160563	ENSGT00940000155981	ENSGT01030000234624.a.a.b	ENSGT01030000234624.a.a.a	ENSGT01030000234624.a.b	ENSGT01030000234624.b.a.b.a.b	ENSGT01030000234624.b.a.b.b	ENSGT01030000234624.b.a.b.a.a	ENSGT01030000234624.b.a.a	ENSGT00940000153229.A.a.b	ENSGT00940000158138	ENSGT00390000000568	ENSGT00950000182909.b.a.b
Cetacea	ANCESTRAL SPECIES	11	ENSGT00510000048348	ENSGT00940000157008	ENSGT00390000009127	ENSGT00940000156182	ENSGT00940000153902.a	ENSGT00940000155638	ENSGT00950000182917.b	ENSGT00390000000444	ENSGT00940000155295.p	ENSGT00940000167019	ENSGT00390000017571	ENSGT00940000162118	ENSGT00940000159287	ENSGT00940000156352	ENSGT00940000160354	ENSGT00390000011620.a.a.a ##22	ENSGT00940000156453.a	ENSGT00940000156037.a	ENSGT00940000160563	ENSGT00940000155981	ENSGT01030000234624.a.a.b	ENSGT01030000234624.a.a.a	ENSGT01030000234624.a.b	ENSGT01030000234624.b.a.b.a.b	ENSGT01030000234624.b.a.b.a.a	ENSGT01030000234624.b.a.a	ENSGT00940000153229.A.a.b	ENSGT00940000158138	ENSGT00390000000568	ENSGT00950000182909.b.a.b	ENSGT00950000182909.b.a.a
Odontoceti	ANCESTRAL SPECIES	10	ENSGT00940000173219	ENSGT00510000048348	ENSGT00940000157008	ENSGT00390000009127	ENSGT00940000156182	ENSGT00940000153902.a	ENSGT00940000155638	ENSGT00950000182917.b	ENSGT00390000000444	ENSGT00940000155295.p	ENSGT00390000017571	ENSGT00940000162118	ENSGT00940000159287	ENSGT00940000156352	ENSGT00940000160354	ENSGT00390000011620.a.a.a ##22	ENSGT00940000156453.a	ENSGT00940000156037.a	ENSGT00940000160563	ENSGT00940000155981	ENSGT01030000234624.a.a.b	ENSGT01030000234624.a.a.a	ENSGT01030000234624.b.a.b.a.b	ENSGT01030000234624.b.a.b.a.a	ENSGT01030000234624.b.a.a	ENSGT00940000153229.A.a.b	ENSGT00940000158138	ENSGT00390000000568	ENSGT00950000182909.b.a.b	ENSGT00950000182909.b.a.a	ENSGT00950000183111.b.a
Odontoceti_a	ANCESTRAL SPECIES	9	ENSGT00940000173219	ENSGT00510000048348	ENSGT00940000157008	ENSGT00390000009127	ENSGT00940000156182	ENSGT00940000153902.a	ENSGT00940000155638	ENSGT00950000182917.b	ENSGT00390000000444	ENSGT00940000155295.p	ENSGT00390000017571	ENSGT00940000162118	ENSGT00940000159287	ENSGT00940000156352	ENSGT00940000160354	ENSGT00390000011620.a.a.a ##22	ENSGT00940000156453.a	ENSGT00940000156037.a	ENSGT00940000160563	ENSGT00940000155981	ENSGT01030000234624.a.a.b	ENSGT01030000234624.a.a.a	ENSGT01030000234624.b.a.b.a.b	ENSGT01030000234624.b.a.b.a.a	ENSGT01030000234624.b.a.a	ENSGT00940000153229.A.a.b	ENSGT00940000158138	ENSGT00390000000568	ENSGT00950000182909.b.a.b	ENSGT00950000182909.b.a.a	ENSGT00950000183111.b.a
Odontoceti_b	ANCESTRAL SPECIES	10	ENSGT00940000173219	ENSGT00510000048348	ENSGT00940000157008	ENSGT00390000009127	ENSGT00940000156182	ENSGT00940000153902.a	ENSGT00940000155638	ENSGT00950000182917.b	ENSGT00390000000444	ENSGT00940000155295.p	ENSGT00390000017571	ENSGT00940000162118	ENSGT00940000159287	ENSGT00940000156352	ENSGT00940000160354	ENSGT00390000011620.a.a.a ##22	ENSGT00940000156453.a	ENSGT00390000011776.f	ENSGT00940000156037.a	ENSGT00940000160563	ENSGT00940000155981	ENSGT01030000234624.a.a.b	ENSGT01030000234624.a.a.a	ENSGT01030000234624.b.a.b.a.b	ENSGT01030000234624.b.a.b.a.a	ENSGT01030000234624.b.a.a	ENSGT00940000153229.A.a.b	ENSGT00940000158138	ENSGT00950000183087.A.a.a.a.b.b.a.b.a.a	ENSGT00390000007685.h	ENSGT00390000000568
Monodontidae	ANCESTRAL SPECIES	8	ENSGT00940000173219	ENSGT00510000048348	ENSGT00940000157008	ENSGT00390000009127	ENSGT00940000156182	ENSGT00940000153902.a	ENSGT00940000155638	ENSGT00950000182917.b	ENSGT00390000000444	ENSGT00940000155295.p	ENSGT00390000017571	ENSGT00940000162118	ENSGT00940000159287	ENSGT00940000156352	ENSGT00940000160354	ENSGT00390000011620.a.a.a ##22	ENSGT00940000156453.a	ENSGT00390000011776.f	ENSGT00940000156037.a	ENSGT00940000160563	ENSGT00940000155981	ENSGT01030000234624.a.a.b	ENSGT01030000234624.a.a.a	ENSGT01030000234624.b.a.b.a.b	ENSGT01030000234624.b.a.b.a.a	ENSGT01030000234624.b.a.a	ENSGT00940000153229.A.a.b	ENSGT00940000158138	ENSGT00950000183087.A.a.a.a.b.b.a.b.a.a	ENSGT00390000007685.h	ENSGT00390000000568
Narwhal	MODERN SPECIES	295	TMEM241 (ENSMMNG00015002295)	RIOK3 (ENSMMNG00015002244)	RMC1 (ENSMMNG00015002190)	NPC1 (ENSMMNG00015002098)	ANKRD29 (ENSMMNG00015002037)	LAMA3 (ENSMMNG00015001617)	TTC39C (ENSMMNG00015001372)	ENSMMNG00015001325	OSBPL1A (ENSMMNG00015001205)	IMPACT (ENSMMNG00015001153)	HRH4 (ENSMMNG00015001127)	ZNF521 (ENSMMNG00015001108)	ENSMMNG00015001086	SS18 (ENSMMNG00015001019)	PSMA8 (ENSMMNG00015000923)	TAF4B (ENSMMNG00015000855) ##22	KCTD1 (ENSMMNG00015000811)	AMD1 (ENSMMNG00015000790)	AQP4 (ENSMMNG00015000774)	CHST9 (ENSMMNG00015000747)	CDH2 (ENSMMNG00015000659)	DSC3 (ENSMMNG00015000550)	DSC2 (ENSMMNG00015000465)	DSG1 (ENSMMNG00015000381)	DSG3 (ENSMMNG00015000308)	DSG2 (ENSMMNG00015000258)	TTR (ENSMMNG00015000227)	B4GALT6 (ENSMMNG00015000197)	ENSMMNG00015000161	ENSMMNG00015000145	TRAPPC8 (ENSMMNG00015000071)
Beluga whale	MODERN SPECIES	11	ENSDLEG00000002769	ENSDLEG00000002775	RIOK3 (ENSDLEG00000002781)	CUNH18orf8 (ENSDLEG00000002795)	NPC1 (ENSDLEG00000002888)	ANKRD29 (ENSDLEG00000002958)	LAMA3 (ENSDLEG00000003188)	TTC39C (ENSDLEG00000003460)	ENSDLEG00000003488	OSBPL1A (ENSDLEG00000003564)	IMPACT (ENSDLEG00000003771)	HRH4 (ENSDLEG00000003777)	ZNF521 (ENSDLEG00000003793)	SS18 (ENSDLEG00000003880)	PSMA8 (ENSDLEG00000003904)	TAF4B (ENSDLEG00000003952) ##22	KCTD1 (ENSDLEG00000003970)	AMD1 (ENSDLEG00000003978)	AQP4 (ENSDLEG00000003985)	CHST9 (ENSDLEG00000003994)	CDH2 (ENSDLEG00000004000)	DSC3 (ENSDLEG00000004017)	DSG1 (ENSDLEG00000004534)	DSG3 (ENSDLEG00000004550)	DSG2 (ENSDLEG00000004576)	ENSDLEG00000004599	ENSDLEG00000004605	ENSDLEG00000004612	B4GALT6 (ENSDLEG00000004625)	ENSDLEG00000004641	ENSDLEG00000004652
Vaquita	MODERN SPECIES	5	CABLES1 (ENSPSNG00000009762) ##12	TMEM241 (ENSPSNG00000009641)	RIOK3 (ENSPSNG00000009505)	RMC1 (ENSPSNG00000009338)	NPC1 (ENSPSNG00000009174)	ANKRD29 (ENSPSNG00000009122)	LAMA3 (ENSPSNG00000008984)	TTC39C (ENSPSNG00000008785)	ENSPSNG00000008710	OSBPL1A (ENSPSNG00000008616)	IMPACT (ENSPSNG00000008545)	ENSPSNG00000008502	ZNF521 (ENSPSNG00000008452)	SS18 (ENSPSNG00000008316)	PSMA8 (ENSPSNG00000008154)	TAF4B (ENSPSNG00000008105) ##22	KCTD1 (ENSPSNG00000008060)	AMD1 (ENSPSNG00000008027)	AQP4 (ENSPSNG00000007970)	CHST9 (ENSPSNG00000007952)	ENSPSNG00000007913	CDH2 (ENSPSNG00000007787)	ENSPSNG00000007734	DSC3 (ENSPSNG00000007681)	DSC2 (ENSPSNG00000007597)	DSG1 (ENSPSNG00000007476)	DSG3 (ENSPSNG00000007363)	DSG2 (ENSPSNG00000007220)	TTR (ENSPSNG00000007168)	B4GALT6 (ENSPSNG00000007068)	ENSPSNG00000007001
Dolphin	MODERN SPECIES	1170															PSMA8 (ENSTTRG00000014586)	TAF4B (ENSTTRG00000014587) ##22	KCTD1 (ENSTTRG00000014588)
Sperm whale	MODERN SPECIES	10	CABLES1 (ENSPCTG00005022117) ##12	TMEM241 (ENSPCTG00005022186)	RIOK3 (ENSPCTG00005022208)	RMC1 (ENSPCTG00005022219)	NPC1 (ENSPCTG00005022232)	ANKRD29 (ENSPCTG00005022261)	LAMA3 (ENSPCTG00005022309)	TTC39C (ENSPCTG00005022342)	ENSPCTG00005022352	OSBPL1A (ENSPCTG00005022359)	IMPACT (ENSPCTG00005022371)	HRH4 (ENSPCTG00005022384)	ZNF521 (ENSPCTG00005022406)	SS18 (ENSPCTG00005022418)	PSMA8 (ENSPCTG00005022434)	TAF4B (ENSPCTG00005022465) ##22	ENSPCTG00005022469	ENSPCTG00005022475	AQP4 (ENSPCTG00005022481)	CHST9 (ENSPCTG00005022483)	CDH2 (ENSPCTG00005022489)	ENSPCTG00005022497	DSC3 (ENSPCTG00005022499)	DSC2 (ENSPCTG00005022506)	DSG1 (ENSPCTG00005022535)	DSG3 (ENSPCTG00005022542)	DSG2 (ENSPCTG00005022548)	TTR (ENSPCTG00005022550)	B4GALT6 (ENSPCTG00005022552)	ENSPCTG00005022563	TRAPPC8 (ENSPCTG00005022572)
Blue whale	MODERN SPECIES	5	RIOK3 (ENSBMSG00010013347)	RMC1 (ENSBMSG00010013380)	NPC1 (ENSBMSG00010013397)	ANKRD29 (ENSBMSG00010013429)	ENSBMSG00010013460	ENSBMSG00010013526	TTC39C (ENSBMSG00010013630)	ENSBMSG00010013674	OSBPL1A (ENSBMSG00010013730)	ENSBMSG00010013746	IMPACT (ENSBMSG00010013762)	ENSBMSG00010013781	ZNF521 (ENSBMSG00010013791)	SS18 (ENSBMSG00010013837)	PSMA8 (ENSBMSG00010013887)	TAF4B (ENSBMSG00010013965) ##22	KCTD1 (ENSBMSG00010014015)	AQP4 (ENSBMSG00010014087)	CHST9 (ENSBMSG00010014144)	CDH2 (ENSBMSG00010013919)	DSC3 (ENSBMSG00010014116)	DSC2 (ENSBMSG00010014259)	DSC1 (ENSBMSG00010014439)	DSG1 (ENSBMSG00010014619)	DSG3 (ENSBMSG00010014691)	DSG2 (ENSBMSG00010014748)	TTR (ENSBMSG00010014822)	B4GALT6 (ENSBMSG00010014860)	ENSBMSG00010015035	TRAPPC8 (ENSBMSG00010015070)	RNF125 (ENSBMSG00010015130)
Pecora	ANCESTRAL SPECIES	26	ENSGT00400000022086.a ##12	ENSGT00510000048348	ENSGT00940000157008	ENSGT00390000009127	ENSGT00940000156182	ENSGT00940000153902.a	ENSGT00940000155638	ENSGT00950000182917.b	ENSGT00390000000444	ENSGT00940000155295.p	ENSGT00390000017571	ENSGT00940000162118	ENSGT00940000159287	ENSGT00940000156352	ENSGT00940000160354	ENSGT00390000011620.a.a.a ##22	ENSGT00940000156453.a	ENSGT00940000156037.a	ENSGT00940000160563	ENSGT00940000155981	ENSGT01030000234624.a.a.b	ENSGT01030000234624.a.a.a	ENSGT01030000234624.a.b	ENSGT01030000234624.b.a.b.a.b	ENSGT01030000234624.b.a.b.b	ENSGT01030000234624.b.a.b.a.a	ENSGT01030000234624.b.a.a	ENSGT00940000153229.A.a.b	ENSGT00940000158138	ENSGT00390000000568	ENSGT00950000182909.b.a.b
Yarkand deer	MODERN SPECIES	19	TMEM241 (ENSCHYG00000021258)	RIOK3 (ENSCHYG00000021752)	RMC1 (ENSCHYG00000021923)	NPC1 (ENSCHYG00000022083)	ANKRD29 (ENSCHYG00000022311)	LAMA3 (ENSCHYG00000022890)	TTC39C (ENSCHYG00000025288)	ENSCHYG00000025325	OSBPL1A (ENSCHYG00000025361)	IMPACT (ENSCHYG00000025487)	HRH4 (ENSCHYG00000025602)	ENSCHYG00000025622	ZNF521 (ENSCHYG00000025646)	SS18 (ENSCHYG00000025725)	PSMA8 (ENSCHYG00000025804)	TAF4B (ENSCHYG00000025823) ##22	KCTD1 (ENSCHYG00000025850)	AQP4 (ENSCHYG00000025868)	CHST9 (ENSCHYG00000025890)	CDH2 (ENSCHYG00000025907)	ENSCHYG00000025944	ENSCHYG00000025978	ENSCHYG00000025965	DSC3 (ENSCHYG00000026008)	DSC2 (ENSCHYG00000026115)	ENSCHYG00000026180	DSG1 (ENSCHYG00000026189)	DSG4 (ENSCHYG00000026207)	DSG3 (ENSCHYG00000026242)	TTR (ENSCHYG00000026307)	B4GALT6 (ENSCHYG00000026327)
Percora_a	ANCESTRAL SPECIES	28	ENSGT00400000022086.a ##12	ENSGT00510000048348	ENSGT00940000157008	ENSGT00390000009127	ENSGT00940000156182	ENSGT00940000153902.a	ENSGT00940000155638	ENSGT00950000182917.b	ENSGT00390000000444	ENSGT00940000155295.p	ENSGT00390000017571	ENSGT00940000162118	ENSGT00940000159287	ENSGT00940000156352	ENSGT00940000160354	ENSGT00390000011620.a.a.a ##22	ENSGT00940000156453.a	ENSGT00940000156037.a	ENSGT00940000160563	ENSGT00940000155981	ENSGT01030000234624.a.a.b	ENSGT01030000234624.a.a.a	ENSGT01030000234624.a.b	ENSGT01030000234624.b.a.b.a.b	ENSGT01030000234624.b.a.b.b	ENSGT01030000234624.b.a.b.a.a	ENSGT01030000234624.b.a.a	ENSGT00940000153229.A.a.b	ENSGT00940000158138	ENSGT00390000000568	ENSGT00950000182909.b.a.b
Bovidae	ANCESTRAL SPECIES	28	ENSGT00510000048348	ENSGT00940000157008	ENSGT00390000009127	ENSGT00940000156182	ENSGT00940000153902.a	ENSGT00390000004856.w.a.a.b.a	ENSGT00940000155638	ENSGT00950000182917.b	ENSGT00390000000444	ENSGT00940000155295.p	ENSGT00390000017571	ENSGT00940000162118	ENSGT00940000159287	ENSGT00940000156352.l	ENSGT00940000160354	ENSGT00390000011620.a.a.a ##22	ENSGT00940000156453.a	ENSGT00940000156037.a	ENSGT00940000160563	ENSGT00940000155981	ENSGT01030000234624.a.a.b	ENSGT01030000234624.a.a.a	ENSGT01030000234624.a.b	ENSGT01030000234624.b.a.b.a.b	ENSGT01030000234624.b.a.b.b	ENSGT01030000234624.b.a.b.a.a	ENSGT01030000234624.b.a.a	ENSGT00940000153229.A.a.b	ENSGT00940000158138	ENSGT00390000000568	ENSGT00950000182909.b.a.b
Bovinae	ANCESTRAL SPECIES	28	ENSGT00510000048348	ENSGT00940000157008	ENSGT00390000009127	ENSGT00940000156182	ENSGT00940000153902.a	ENSGT00390000004856.w.a.a.b.a	ENSGT00940000155638	ENSGT00950000182917.b	ENSGT00390000000444	ENSGT00940000155295.p	ENSGT00390000017571	ENSGT00940000162118	ENSGT00940000159287	ENSGT00940000156352.l	ENSGT00940000160354	ENSGT00390000011620.a.a.a ##22	ENSGT00940000156453.a	ENSGT00940000156037.a	ENSGT00940000160563	ENSGT00390000001562.b	ENSGT00390000016713.b	ENSGT00940000155981	ENSGT01030000234624.a.a.b	ENSGT01030000234624.a.a.a	ENSGT01030000234624.a.b	ENSGT01030000234624.b.a.b.a.b	ENSGT01030000234624.b.a.b.b	ENSGT01030000234624.b.a.b.a.a	ENSGT01030000234624.b.a.a	ENSGT00940000153229.A.a.b	ENSGT00940000158138
Bos	ANCESTRAL SPECIES	29	ENSGT00400000022086.a ##12	ENSGT00510000048348	ENSGT00940000157008	ENSGT00390000009127	ENSGT00940000156182	ENSGT00940000153902.a	ENSGT00940000155638	ENSGT00950000182917.b	ENSGT00390000000444	ENSGT00940000155295.p	ENSGT00390000017571	ENSGT00940000162118	ENSGT00940000159287	ENSGT00940000156352.l	ENSGT00940000160354	ENSGT00390000011620.a.a.a ##22	ENSGT00940000156453.a	ENSGT00940000156037.a	ENSGT00940000160563	ENSGT00390000001562.b.b	ENSGT00390000016713.b	ENSGT00940000155981	ENSGT01030000234624.a.a.b	ENSGT01030000234624.a.a.a	ENSGT01030000234624.a.b	ENSGT01030000234624.b.a.b.a.b	ENSGT01030000234624.b.a.b.b	ENSGT01030000234624.b.a.b.a.a	ENSGT01030000234624.b.a.a	ENSGT00940000153229.A.a.b	ENSGT00940000158138
Bos_b	ANCESTRAL SPECIES	34	ENSGT00510000048348	ENSGT00940000157008	ENSGT00390000009127	ENSGT00940000156182	ENSGT00940000153902.a	ENSGT01100000263480.a.a.b.b.b.a.a.a.a.a.a.a.b	ENSGT00940000155638	ENSGT00950000182917.b	ENSGT00390000000444	ENSGT00940000155295.p	ENSGT00390000017571	ENSGT00940000162118	ENSGT00940000159287	ENSGT00940000156352.l	ENSGT00940000160354	ENSGT00390000011620.a.a.a ##22	ENSGT00940000156453.a	ENSGT00940000156037.a	ENSGT00390000001562.b.b	ENSGT00940000160563	ENSGT00390000016713.b	ENSGT00940000155981	ENSGT01030000234624.a.a.b	ENSGT01030000234624.a.a.a	ENSGT01030000234624.a.b	ENSGT01030000234624.b.a.b.a.b	ENSGT01030000234624.b.a.b.b	ENSGT01030000234624.b.a.b.a.a	ENSGT01030000234624.b.a.a	ENSGT00940000153229.A.a.b	ENSGT00940000158138
Cow	MODERN SPECIES	16	RMC1 (ENSBTAG00000015190)	NPC1 (ENSBTAG00000015195)	ANKRD29 (ENSBTAG00000000517)	ENSBTAG00000051310	LAMA3 (ENSBTAG00000027181)	ENSBTAG00000055205	TTC39C (ENSBTAG00000005635)	CABYR (ENSBTAG00000005638)	OSBPL1A (ENSBTAG00000023259)	IMPACT (ENSBTAG00000003035)	HRH4 (ENSBTAG00000020467)	ZNF521 (ENSBTAG00000007383)	ENSBTAG00000050912	SS18 (ENSBTAG00000011531)	PSMA8 (ENSBTAG00000017698)	TAF4B (ENSBTAG00000004257) ##22	KCTD1 (ENSBTAG00000050380)	AQP4 (ENSBTAG00000051072)	ENSBTAG00000034032	CHST9 (ENSBTAG00000014082)	ENSBTAG00000044212	CDH2 (ENSBTAG00000021190)	DSC3 (ENSBTAG00000015238)	DSC2 (ENSBTAG00000040584)	DSC1 (ENSBTAG00000019876)	DSG1 (ENSBTAG00000013831)	DSG4 (ENSBTAG00000040126)	DSG3 (ENSBTAG00000039483)	DSG2 (ENSBTAG00000021923)	TTR (ENSBTAG00000010991)	B4GALT6 (ENSBTAG00000044063)
Hybrid Bos Indicus	MODERN SPECIES	16	RIOK3 (ENSBIXG00005015293)	RMC1 (ENSBIXG00005002251)	NPC1 (ENSBIXG00005006342)	ANKRD29 (ENSBIXG00005015389)	ENSBIXG00005015416	LAMA3 (ENSBIXG00005015748)	TTC39C (ENSBIXG00005000166)	ENSBIXG00005015863	ENSBIXG00005015877	ENSBIXG00005015918	IMPACT (ENSBIXG00005016003)	HRH4 (ENSBIXG00005016024)	ZNF521 (ENSBIXG00005016101)	SS18 (ENSBIXG00005016267)	PSMA8 (ENSBIXG00005016367)	TAF4B (ENSBIXG00005016451) ##22	KCTD1 (ENSBIXG00005006350)	ENSBIXG00005016522	AQP4 (ENSBIXG00005016607)	ENSBIXG00005002677	CHST9 (ENSBIXG00005016684)	ENSBIXG00005016729	CDH2 (ENSBIXG00005016836)	DSC2 (ENSBIXG00005017035)	DSG1 (ENSBIXG00005017148)	DSG2 (ENSBIXG00005017262)	TTR (ENSBIXG00005017301)	B4GALT6 (ENSBIXG00005006868)	TRAPPC8 (ENSBIXG00005017378)	RNF125 (ENSBIXG00005017425)	RNF138 (ENSBIXG00005017505)
Bos_a	ANCESTRAL SPECIES	28	ENSGT00400000022086.a ##12	ENSGT00510000048348	ENSGT00940000157008	ENSGT00390000009127	ENSGT00940000156182	ENSGT00940000153902.a	ENSGT00940000155638	ENSGT00950000182917.b	ENSGT00390000000444	ENSGT00940000155295.p	ENSGT00390000017571	ENSGT00940000162118	ENSGT00940000159287	ENSGT00940000156352.l	ENSGT00940000160354	ENSGT00390000011620.a.a.a ##22	ENSGT00940000156453.a	ENSGT00940000156037.a	ENSGT00940000160563	ENSGT00390000001562.b.b	ENSGT00940000155981	ENSGT01030000234624.a.a.b	ENSGT01030000234624.a.a.a	ENSGT01030000234624.a.b	ENSGT01030000234624.b.a.b.a.b	ENSGT01030000234624.b.a.b.b	ENSGT01030000234624.b.a.b.a.a	ENSGT01030000234624.b.a.a	ENSGT00940000153229.A.a.b	ENSGT00940000158138	ENSGT00390000000568
Wild yak	MODERN SPECIES	1833													ZNF521 (ENSBMUG00000016252)	ENSBMUG00000016291	PSMA8 (ENSBMUG00000016299)	TAF4B (ENSBMUG00000016359) ##22	KCTD1 (ENSBMUG00000016424)	AQP4 (ENSBMUG00000016437)	ENSBMUG00000016443	ENSBMUG00000016450
Domestic yak	MODERN SPECIES	13	NPC1 (ENSBGRG00000025764)	ANKRD29 (ENSBGRG00000025736)	ENSBGRG00000025725	ENSBGRG00000025723	LAMA3 (ENSBGRG00000025081)	TTC39C (ENSBGRG00000025000)	CABYR (ENSBGRG00000024984)	ENSBGRG00000024973	ENSBGRG00000024936	IMPACT (ENSBGRG00000024891)	ENSBGRG00000024882	ENSBGRG00000024872	ZNF521 (ENSBGRG00000024829)	SS18 (ENSBGRG00000024680)	PSMA8 (ENSBGRG00000024651)	TAF4B (ENSBGRG00000024498) ##22	KCTD1 (ENSBGRG00000024405)	AQP4 (ENSBGRG00000024349)	ENSBGRG00000024321	CHST9 (ENSBGRG00000024193)	CDH2 (ENSBGRG00000023975)	ENSBGRG00000023902	DSC2 (ENSBGRG00000023388)	DSC1 (ENSBGRG00000023106)	DSG1 (ENSBGRG00000023015)	DSG4 (ENSBGRG00000022932)	DSG3 (ENSBGRG00000022834)	DSG2 (ENSBGRG00000022705)	TTR (ENSBGRG00000022634)	B4GALT6 (ENSBGRG00000022553)	TRAPPC8 (ENSBGRG00000022272)
American bison	MODERN SPECIES	3353	TMEM241 (ENSBBBG00000020754)	RIOK3 (ENSBBBG00000020738)	RMC1 (ENSBBBG00000005582)	NPC1 (ENSBBBG00000020529)	ANKRD29 (ENSBBBG00000000563)	LAMA3 (ENSBBBG00000000608)	ENSBBBG00000020155	TTC39C (ENSBBBG00000020150)	CABYR (ENSBBBG00000020139)	ENSBBBG00000020113	IMPACT (ENSBBBG00000020060)	HRH4 (ENSBBBG00000020050)	ZNF521 (ENSBBBG00000020027)	SS18 (ENSBBBG00000020014)	PSMA8 (ENSBBBG00000019972)	TAF4B (ENSBBBG00000005395) ##22	ENSBBBG00000019929	AQP4 (ENSBBBG00000019912)	CHST9 (ENSBBBG00000005388)	ENSBBBG00000006970	ENSBBBG00000019869	CDH2 (ENSBBBG00000019864)	DSC3 (ENSBBBG00000019832)	DSC2 (ENSBBBG00000019761)	DSC1 (ENSBBBG00000019687)	DSG1 (ENSBBBG00000019650)	DSG4 (ENSBBBG00000005298)	DSG3 (ENSBBBG00000005283)	DSG2 (ENSBBBG00000019513)	TTR (ENSBBBG00000019495)	B4GALT6 (ENSBBBG00000019479)
Caprinae	ANCESTRAL SPECIES	25	ENSGT00510000048348	ENSGT00940000157008	ENSGT00390000009127	ENSGT00940000156182	ENSGT00940000153902.a	ENSGT00390000004856.w.a.a.b.a	ENSGT00940000155638	ENSGT00950000182917.b	ENSGT00390000000444	ENSGT00940000155295.p	ENSGT00390000017571	ENSGT00940000162118	ENSGT00940000159287	ENSGT00940000156352.l	ENSGT00940000160354	ENSGT00390000011620.a.a.a ##22	ENSGT00940000156453.a	ENSGT00940000156037.a	ENSGT00940000160563	ENSGT00940000155981	ENSGT01030000234624.a.a.b	ENSGT01030000234624.a.a.a	ENSGT01030000234624.a.b	ENSGT01030000234624.b.a.b.a.b	ENSGT01030000234624.b.a.b.b	ENSGT01030000234624.b.a.b.a.a	ENSGT01030000234624.b.a.a	ENSGT00940000153229.A.a.b	ENSGT00940000158138	ENSGT00390000000568	ENSGT00950000182909.b.a.b
Goat	MODERN SPECIES	16	RIOK3 (ENSCHIG00000009312)	ENSCHIG00000024653	ENSCHIG00000021287	ANKRD29 (ENSCHIG00000018673)	ENSCHIG00000015951	LAMA3 (ENSCHIG00000013633)	TTC39C (ENSCHIG00000009120)	CABYR (ENSCHIG00000009351)	OSBPL1A (ENSCHIG00000000386)	IMPACT (ENSCHIG00000000286)	HRH4 (ENSCHIG00000000251)	ZNF521 (ENSCHIG00000000138)	SS18 (ENSCHIG00000000067)	ENSCHIG00000000490	PSMA8 (ENSCHIG00000018832)	TAF4B (ENSCHIG00000022055) ##22	KCTD1 (ENSCHIG00000013103)	AQP4 (ENSCHIG00000010124)	CHST9 (ENSCHIG00000021685)	ENSCHIG00000003085	CDH2 (ENSCHIG00000018662)	ENSCHIG00000007130	DSC3 (ENSCHIG00000021926)	DSC2 (ENSCHIG00000020827)	DSC1 (ENSCHIG00000006661)	DSG1 (ENSCHIG00000019924)	DSG4 (ENSCHIG00000024819)	DSG3 (ENSCHIG00000021842)	DSG2 (ENSCHIG00000016271)	TTR (ENSCHIG00000009995)	B4GALT6 (ENSCHIG00000000421)
Rambouillet Sheep	MODERN SPECIES	15	CABLES1 (ENSOARG00020025896) ##12	TMEM241 (ENSOARG00020025890)	RIOK3 (ENSOARG00020025882)	RMC1 (ENSOARG00020025860)	ENSOARG00020025767	ANKRD29 (ENSOARG00020025754)	LAMA3 (ENSOARG00020025616)	TTC39C (ENSOARG00020025558)	CABYR (ENSOARG00020025548)	OSBPL1A (ENSOARG00020025534)	ENSOARG00020025524	HRH4 (ENSOARG00020025511)	ZNF521 (ENSOARG00020025499)	SS18 (ENSOARG00020025456)	PSMA8 (ENSOARG00020025430)	TAF4B (ENSOARG00020025408) ##22	KCTD1 (ENSOARG00020025395)	AQP4 (ENSOARG00020025374)	CHST9 (ENSOARG00020025358)	ENSOARG00020025350	CDH2 (ENSOARG00020025259)	ENSOARG00020025211	DSC2 (ENSOARG00020025065)	DSC1 (ENSOARG00020024999)	DSG1 (ENSOARG00020024979)	DSG4 (ENSOARG00020024957)	DSG2 (ENSOARG00020024912)	TTR (ENSOARG00020024865)	B4GALT6 (ENSOARG00020024733)	TRAPPC8 (ENSOARG00020024583)	RNF125 (ENSOARG00020024558)
Siberian musk deer	MODERN SPECIES	134													ENSMMSG00000013355	SS18 (ENSMMSG00000013386)	PSMA8 (ENSMMSG00000013624)	TAF4B (ENSMMSG00000013698) ##22	KCTD1 (ENSMMSG00000013715)	AQP4 (ENSMMSG00000013736)	CHST9 (ENSMMSG00000013757)	ENSMMSG00000013798	CDH2 (ENSMMSG00000013812)	ENSMMSG00000013827	DSC3 (ENSMMSG00000013852)	DSC2 (ENSMMSG00000013889)	DSC1 (ENSMMSG00000014056)	DSG1 (ENSMMSG00000014105)	DSG4 (ENSMMSG00000014133)	DSG3 (ENSMMSG00000014240)	DSG2 (ENSMMSG00000014273)	TTR (ENSMMSG00000014292)	B4GALT6 (ENSMMSG00000014329)
Laurasiatheria_b	ANCESTRAL SPECIES	13	ENSGT00510000048348	ENSGT00940000157008	ENSGT00390000009127	ENSGT00940000156182	ENSGT00940000153902.a	ENSGT00940000155638	ENSGT00950000182917.b	ENSGT00390000000444	ENSGT00940000155295	ENSGT00940000167019	ENSGT00390000017571	ENSGT00940000162118	ENSGT00940000159287	ENSGT00940000156352	ENSGT00940000160354	ENSGT00390000011620.a.a.a ##22	ENSGT00940000156453.a	ENSGT00940000156037.a	ENSGT00940000160563	ENSGT00940000155981	ENSGT01030000234624.a.a.b	ENSGT01030000234624.a.a.a	ENSGT01030000234624.a.b	ENSGT01030000234624.b.a.b.a.b	ENSGT01030000234624.b.a.b.b	ENSGT01030000234624.b.a.b.a.a	ENSGT01030000234624.b.a.a	ENSGT00940000153229.A.a.b	ENSGT00940000158138	ENSGT00390000000568	ENSGT00950000182909.b.a.b
Carnivora	ANCESTRAL SPECIES	13	ENSGT00510000048348	ENSGT00940000157008	ENSGT00390000009127	ENSGT00940000156182	ENSGT00940000153902.a	ENSGT00940000155638	ENSGT00950000182917.b	ENSGT00390000000444	ENSGT00940000155295	ENSGT00940000167019	ENSGT00390000017571	ENSGT00940000162118	ENSGT00940000159287	ENSGT00940000156352	ENSGT00940000160354	ENSGT00390000011620.a.a.a ##22	ENSGT00940000156453.a	ENSGT00940000156037.a	ENSGT00940000160563	ENSGT00940000155981	ENSGT01030000234624.a.a.b	ENSGT01030000234624.a.a.a	ENSGT01030000234624.a.b	ENSGT01030000234624.b.a.b.a.b	ENSGT01030000234624.b.a.b.b	ENSGT01030000234624.b.a.b.a.a	ENSGT01030000234624.b.a.a	ENSGT00940000153229.A.a.b	ENSGT00940000158138	ENSGT00390000000568	ENSGT00950000182909.b.a.b
Caniformia	ANCESTRAL SPECIES	9	ENSGT00510000048348	ENSGT00940000157008	ENSGT00390000009127	ENSGT00940000156182	ENSGT00940000153902.a	ENSGT00940000155638	ENSGT00950000182917.b	ENSGT00390000000444	ENSGT00940000155295	ENSGT00940000167019	ENSGT00390000017571	ENSGT00940000162118.e	ENSGT00940000159287	ENSGT00940000156352	ENSGT00940000160354	ENSGT00390000011620.a.a.a ##22	ENSGT00940000156453.a	ENSGT00940000156037.a	ENSGT00940000160563	ENSGT00940000155981	ENSGT01030000234624.a.a.b	ENSGT01030000234624.a.a.a	ENSGT01030000234624.a.b	ENSGT01030000234624.b.a.b.a.b	ENSGT01030000234624.b.a.b.b	ENSGT01030000234624.b.a.b.a.a	ENSGT01030000234624.b.a.a	ENSGT00940000153229.A.a.b	ENSGT00940000158138	ENSGT00390000000568	ENSGT00950000182909.b.a.b
Canidae	ANCESTRAL SPECIES	1	ENSGT00400000022086.a ##12	ENSGT00510000048348	ENSGT00940000157008	ENSGT00390000009127	ENSGT00940000156182	ENSGT00940000153902.a	ENSGT00940000155638	ENSGT00950000182917.b	ENSGT00390000000444	ENSGT00940000155295	ENSGT00390000017571	ENSGT00940000162118.e	ENSGT00940000159287	ENSGT00940000156352	ENSGT00940000160354	ENSGT00390000011620.a.a.a ##22	ENSGT00940000156453.a	ENSGT00940000156037.a	ENSGT00940000160563	ENSGT00940000155981	ENSGT00980000198488.m.a.a.b.b	ENSGT01030000234624.a.a.b	ENSGT01030000234624.a.a.a	ENSGT01030000234624.a.b	ENSGT01030000234624.b.a.b.a.b	ENSGT01030000234624.b.a.b.b	ENSGT01030000234624.b.a.b.a.a	ENSGT01030000234624.b.a.a	ENSGT00940000153229.A.a.b	ENSGT00940000158138	ENSGT00390000000568
Canis_lupus	ANCESTRAL SPECIES	4	ENSGT00400000022086.a ##12	ENSGT00510000048348	ENSGT00940000157008	ENSGT00390000009127	ENSGT00940000156182	ENSGT00940000153902.a	ENSGT00940000155638	ENSGT00950000182917.b	ENSGT00390000000444	ENSGT00940000155295	ENSGT00390000017571	ENSGT00940000162118.e	ENSGT00940000159287	ENSGT00940000156352	ENSGT00940000160354	ENSGT00390000011620.a.a.a ##22	ENSGT00940000156453.a	ENSGT00940000156037.a	ENSGT00940000160563	ENSGT00940000155981	ENSGT00390000004553.v	ENSGT00980000198488.m.a.a.b.b	ENSGT01030000234624.a.a.b	ENSGT01030000234624.a.a.a	ENSGT01030000234624.a.b	ENSGT01030000234624.b.a.b.a.b	ENSGT01030000234624.b.a.b.b	ENSGT01030000234624.b.a.b.a.a	ENSGT01030000234624.b.a.a	ENSGT00940000153229.A.a.b	ENSGT00940000158138
Dingo	MODERN SPECIES	271	RIOK3 (ENSCAFG00020014801)	RMC1 (ENSCAFG00020014780)	NPC1 (ENSCAFG00020014675)	ANKRD29 (ENSCAFG00020014654)	LAMA3 (ENSCAFG00020014281)	TTC39C (ENSCAFG00020014227)	ENSCAFG00020014222	ENSCAFG00020014086	ENSCAFG00020013993	IMPACT (ENSCAFG00020013938)	ENSCAFG00020013917	ENSCAFG00020013914	ZNF521 (ENSCAFG00020013903)	SS18 (ENSCAFG00020013878)	PSMA8 (ENSCAFG00020013698)	TAF4B (ENSCAFG00020013685) ##22	KCTD1 (ENSCAFG00020013668)	AQP4 (ENSCAFG00020013646)	CHST9 (ENSCAFG00020013635)	CDH2 (ENSCAFG00020013609)	ENSCAFG00020013571	ENSCAFG00020013564	DSC3 (ENSCAFG00020013446)	DSC2 (ENSCAFG00020013421)	DSC1 (ENSCAFG00020013393)	DSG1 (ENSCAFG00020013329)	DSG4 (ENSCAFG00020013300)	DSG3 (ENSCAFG00020013288)	DSG2 (ENSCAFG00020013244)	TTR (ENSCAFG00020013232)	B4GALT6 (ENSCAFG00020013195)
Dog	MODERN SPECIES	35	CABLES1 (ENSCAFG00845015409) ##12	TMEM241 (ENSCAFG00845015272)	RIOK3 (ENSCAFG00845015169)	RMC1 (ENSCAFG00845015104)	NPC1 (ENSCAFG00845014993)	NPC1 (ENSCAFG00845014901)	LAMA3 (ENSCAFG00845013821)	TTC39C (ENSCAFG00845013441)	CABYR (ENSCAFG00845013397)	OSBPL1A (ENSCAFG00845013281)	IMPACT (ENSCAFG00845013207)	HRH4 (ENSCAFG00845013170)	ZNF521 (ENSCAFG00845013072)	SS18 (ENSCAFG00845012949)	PSMA8 (ENSCAFG00845012864)	TAF4B (ENSCAFG00845012684) ##22	KCTD1 (ENSCAFG00845012599)	AQP4 (ENSCAFG00845012372)	CHST9 (ENSCAFG00845012262)	CDH2 (ENSCAFG00845012116)	NACA (ENSCAFG00845012021)	ENSCAFG00845011983	ENSCAFG00845011961	ENSCAFG00845011726	DSC1 (ENSCAFG00845011207)	DSG1 (ENSCAFG00845011100)	DSG4 (ENSCAFG00845011015)	DSG3 (ENSCAFG00845010787)	DSG3 (ENSCAFG00845010678)	TTR (ENSCAFG00845010593)	B4GALT6 (ENSCAFG00845010375)
Red fox	MODERN SPECIES	59	RMC1 (ENSVVUG00000003607)	NPC1 (ENSVVUG00000003568)	ANKRD29 (ENSVVUG00000003517)	ENSVVUG00000003344	ENSVVUG00000003076	TTC39C (ENSVVUG00000002483)	ENSVVUG00000002436	ENSVVUG00000002402	OSBPL1A (ENSVVUG00000002376)	IMPACT (ENSVVUG00000002343)	ENSVVUG00000002311	ENSVVUG00000002292	ZNF521 (ENSVVUG00000002266)	SS18 (ENSVVUG00000002235)	PSMA8 (ENSVVUG00000002220)	TAF4B (ENSVVUG00000001125) ##22	KCTD1 (ENSVVUG00000001039)	AQP4 (ENSVVUG00000001023)	CHST9 (ENSVVUG00000001006)
Caniformia_b	ANCESTRAL SPECIES	25	ENSGT00510000048348	ENSGT00940000157008	ENSGT00390000009127	ENSGT00940000156182	ENSGT00940000153902.a	ENSGT00940000155638	ENSGT00950000182917.b	ENSGT00390000000444	ENSGT00940000155295	ENSGT00940000167019	ENSGT00390000017571	ENSGT00940000162118.e	ENSGT00940000159287	ENSGT00940000156352	ENSGT00940000160354	ENSGT00390000011620.a.a.a ##22	ENSGT00940000156453.a	ENSGT00940000156037.a	ENSGT00940000160563	ENSGT00940000155981	ENSGT01030000234624.a.a.b	ENSGT01030000234624.a.a.a	ENSGT01030000234624.a.b	ENSGT01030000234624.b.a.b.a.b	ENSGT01030000234624.b.a.b.b	ENSGT01030000234624.b.a.b.a.a	ENSGT01030000234624.b.a.a	ENSGT00940000153229.A.a.b	ENSGT00940000158138	ENSGT00390000000568	ENSGT00950000182909.b.a.b
Mustelinae	ANCESTRAL SPECIES	5	ENSGT00400000022086.a ##12	ENSGT00510000048348	ENSGT00940000157008	ENSGT00390000009127	ENSGT00940000156182	ENSGT00940000153902.a	ENSGT00940000155638	ENSGT00950000182917.b	ENSGT00390000000444	ENSGT00940000155295	ENSGT00390000017571	ENSGT00940000162118.e	ENSGT00940000159287	ENSGT00940000156352	ENSGT00940000160354	ENSGT00390000011620.a.a.a ##22	ENSGT00940000156453.a	ENSGT00940000156037.a	ENSGT00940000160563	ENSGT00940000155981	ENSGT01030000234624.a.a.b	ENSGT01030000234624.a.a.a	ENSGT01030000234624.a.b	ENSGT01030000234624.b.a.b.a.b	ENSGT01030000234624.b.a.b.b	ENSGT01030000234624.b.a.b.a.a	ENSGT01030000234624.b.a.a	ENSGT00940000153229.A.a.b	ENSGT00940000158138	ENSGT00390000000568	ENSGT00950000182909.b.a.b
American mink	MODERN SPECIES	1	RIOK3 (ENSNVIG00000018076)	RMC1 (ENSNVIG00000018147)	NPC1 (ENSNVIG00000018281)	ANR29 (ENSNVIG00000018355)	LAMA3 (ENSNVIG00000018409)	ENSNVIG00000018571	TTC39C (ENSNVIG00000018583)	ENSNVIG00000018609	OSBPL1A (ENSNVIG00000018623)	IMPACT (ENSNVIG00000018693)	ENSNVIG00000018708	ENSNVIG00000018716	ZNF521 (ENSNVIG00000018732)	SS18 (ENSNVIG00000018774)	PSMA8 (ENSNVIG00000018831)	TAF4B (ENSNVIG00000018854) ##22	ENSNVIG00000018893	ENSNVIG00000018920	AQP4 (ENSNVIG00000018926)	CHST9 (ENSNVIG00000018950)	CDH2 (ENSNVIG00000019000)	ENSNVIG00000019096	ENSNVIG00000019102	DSC3 (ENSNVIG00000019127)	DSC2 (ENSNVIG00000019179)	DSC1 (ENSNVIG00000019253)	ENSNVIG00000019336	ENSNVIG00000019374	DSG4 (ENSNVIG00000019385)	DSG3 (ENSNVIG00000019418)	DSG2 (ENSNVIG00000019460)
Ferret	MODERN SPECIES	170	RMC1 (ENSMPUG00000005780)	NPC1 (ENSMPUG00000005792)	ANKRD29 (ENSMPUG00000005801)	LAMA3 (ENSMPUG00000005805)	TTC39C (ENSMPUG00000005831)	ENSMPUG00000005839	OSBPL1A (ENSMPUG00000005858)	IMPACT (ENSMPUG00000006271)	HRH4 (ENSMPUG00000006279)	ENSMPUG00000006318	ZNF521 (ENSMPUG00000006327)	ENSMPUG00000006336	ENSMPUG00000006340	SS18 (ENSMPUG00000006348)	PSMA8 (ENSMPUG00000006359)	TAF4B (ENSMPUG00000006462) ##22	ENSMPUG00000006530	AQP4 (ENSMPUG00000006589)	CHST9 (ENSMPUG00000006597)	CDH2 (ENSMPUG00000006602)	ENSMPUG00000006618	DSC3 (ENSMPUG00000006644)	DSC2 (ENSMPUG00000006720)	DSC1 (ENSMPUG00000006835)	DSG1 (ENSMPUG00000006844)	DSG4 (ENSMPUG00000006860)	DSG3 (ENSMPUG00000006917)	DSG2 (ENSMPUG00000006935)	TTR (ENSMPUG00000006945)	B4GALT6 (ENSMPUG00000006952)	TRAPPC8 (ENSMPUG00000006957)
Ursidae	ANCESTRAL SPECIES	23	ENSGT00510000048348	ENSGT00940000157008	ENSGT00390000009127	ENSGT00940000156182	ENSGT00940000153902.a	ENSGT00940000155638	ENSGT00950000182917.b	ENSGT00390000000444	ENSGT00940000155295	ENSGT00940000167019	ENSGT00390000017571	ENSGT00940000162118.e	ENSGT00940000159287	ENSGT00940000156352	ENSGT00940000160354	ENSGT00390000011620.a.a.a ##22	ENSGT00940000156453.a	ENSGT00940000156037.a	ENSGT00940000160563	ENSGT00940000155981	ENSGT01030000234624.a.a.b	ENSGT01030000234624.a.a.a	ENSGT01030000234624.a.b	ENSGT01030000234624.b.a.b.a.b	ENSGT01030000234624.b.a.b.b	ENSGT01030000234624.b.a.b.a.a	ENSGT01030000234624.b.a.a	ENSGT00940000153229.A.a.b	ENSGT00940000158138	ENSGT00390000000568	ENSGT00950000182909.b.a.b
Ursus	ANCESTRAL SPECIES	25	ENSGT00510000048348	ENSGT00940000157008	ENSGT00390000009127	ENSGT00940000156182	ENSGT00940000153902.a	ENSGT00940000155638.eb	ENSGT00950000182917.b	ENSGT00390000000444	ENSGT00940000155295	ENSGT00940000167019	ENSGT00390000017571	ENSGT00940000162118.e	ENSGT00940000159287	ENSGT00940000156352	ENSGT00940000160354	ENSGT00390000011620.a.a.a ##22	ENSGT00940000156453.a	ENSGT00940000156037.a	ENSGT00940000160563	ENSGT00940000155981	ENSGT00390000007046.b.a.a	ENSGT00940000162838	ENSGT01030000234624.a.a.b	ENSGT01030000234624.a.a.a	ENSGT01030000234624.a.b	ENSGT01030000234624.b.a.b.a.b	ENSGT01030000234624.b.a.b.b	ENSGT01030000234624.b.a.b.a.a	ENSGT01030000234624.b.a.a	ENSGT00940000153229.A.a.b	ENSGT00940000158138
Polar bear	MODERN SPECIES	96	ENSUMAG00000020203	RIOK3 (ENSUMAG00000020218)	RMC1 (ENSUMAG00000020262)	NPC1 (ENSUMAG00000020524)	ANKRD29 (ENSUMAG00000021234)	LAMA3 (ENSUMAG00000021281)	TTC39C (ENSUMAG00000021402)	CABYR (ENSUMAG00000021463)	OSBPL1A (ENSUMAG00000021473)	ENSUMAG00000021518	IMPACT (ENSUMAG00000021522)	HRH4 (ENSUMAG00000021529)	ZNF521 (ENSUMAG00000021540)	SS18 (ENSUMAG00000021552)	PSMA8 (ENSUMAG00000021564)	TAF4B (ENSUMAG00000021608) ##22	ENSUMAG00000021638	AQP4 (ENSUMAG00000021644)	CHST9 (ENSUMAG00000021649)	CDH2 (ENSUMAG00000021664)	ENSUMAG00000000069	DSC3 (ENSUMAG00000000224)	DSC2 (ENSUMAG00000000461)	DSC1 (ENSUMAG00000000916)	DSG1 (ENSUMAG00000001090)	DSG4 (ENSUMAG00000001230)	DSG3 (ENSUMAG00000001331)	ENSUMAG00000001379	TTR (ENSUMAG00000001418)	B4GALT6 (ENSUMAG00000001499)	TRAPPC8 (ENSUMAG00000001511)
American black bear	MODERN SPECIES	4800															ENSUAMG00000026371	TAF4B (ENSUAMG00000026372) ##22
Giant Panda	MODERN SPECIES	5	TMEM241 (ENSAMEG00000013748)	RIOK3 (ENSAMEG00000013754)	RMC1 (ENSAMEG00000013782)	NPC1 (ENSAMEG00000013828)	ANKRD29 (ENSAMEG00000013881)	LAMA3 (ENSAMEG00000013890)	TTC39C (ENSAMEG00000014026)	ENSAMEG00000014040	OSBPL1A (ENSAMEG00000014045)	IMPACT (ENSAMEG00000014120)	ENSAMEG00000031092	ENSAMEG00000027220	ZNF521 (ENSAMEG00000014151)	SS18 (ENSAMEG00000014156)	PSMA8 (ENSAMEG00000014174)	TAF4B (ENSAMEG00000014196) ##22	KCTD1 (ENSAMEG00000014212)	AQP4 (ENSAMEG00000014219)	CHST9 (ENSAMEG00000014226)	ENSAMEG00000011916	ENSAMEG00000009932	ENSAMEG00000009920	MEP1B (ENSAMEG00000009890)	GAREM1 (ENSAMEG00000009884)	KLHL14 (ENSAMEG00000024996)	ENSAMEG00000025674	ENSAMEG00000014913	CCDC178 (ENSAMEG00000000566)	ASXL3 (ENSAMEG00000023934)	NOL4 (ENSAMEG00000000547)	ENSAMEG00000019611
Felidae	ANCESTRAL SPECIES	24	ENSGT00510000048348	ENSGT00940000157008	ENSGT00390000009127	ENSGT00940000156182	ENSGT00940000153902.a	ENSGT00940000155638	ENSGT00950000182917.b	ENSGT00390000000444	ENSGT00940000155295	ENSGT00940000167019	ENSGT00390000017571	ENSGT00940000162118	ENSGT00940000159287	ENSGT00940000156352	ENSGT00940000160354	ENSGT00390000011620.a.a.a ##22	ENSGT00940000156453.a	ENSGT00940000156037.a	ENSGT00940000160563	ENSGT00940000155981	ENSGT01030000234624.a.a.b	ENSGT01030000234624.a.a.a	ENSGT01030000234624.a.b	ENSGT01030000234624.b.a.b.a.b	ENSGT01030000234624.b.a.b.b	ENSGT01030000234624.b.a.b.a.a	ENSGT01030000234624.b.a.a	ENSGT00940000153229.A.a.b	ENSGT00940000158138	ENSGT00390000000568	ENSGT00950000182909.b.a.b
Panthera	ANCESTRAL SPECIES	24	ENSGT00940000157008	ENSGT00390000009127	ENSGT00940000156182	ENSGT00940000153902.a	ENSGT00940000155638	ENSGT00950000182917.b	ENSGT00390000000444	ENSGT00940000155295	ENSGT00940000167019	ENSGT00390000017571	ENSGT00940000162118	ENSGT00940000159287	ENSGT00520000055616.a.q.a.a	ENSGT00940000156352	ENSGT00940000160354	ENSGT00390000011620.a.a.a ##22	ENSGT00940000156453.a	ENSGT00940000156037.a	ENSGT00940000160563	ENSGT00940000155981	ENSGT01030000234624.a.a.b	ENSGT01030000234624.a.a.a	ENSGT01030000234624.a.b	ENSGT01030000234624.b.a.b.a.b	ENSGT01030000234624.b.a.b.b	ENSGT01030000234624.b.a.b.a.a	ENSGT01030000234624.b.a.a	ENSGT00940000153229.A.a.b	ENSGT00940000158138	ENSGT00390000000568	ENSGT00950000182909.b.a.b
Tiger	MODERN SPECIES	75	RIOK3 (ENSPTIG00000000960)	RMC1 (ENSPTIG00000009904)	NPC1 (ENSPTIG00000015286)	ANKRD29 (ENSPTIG00000017790)	LAMA3 (ENSPTIG00000019801)	TTC39C (ENSPTIG00000018592)	ENSPTIG00000002843	ENSPTIG00000008065	ENSPTIG00000011000	IMPACT (ENSPTIG00000011421)	HRH4 (ENSPTIG00000013208)	ZNF521 (ENSPTIG00000014126)	ENSPTIG00000000680	SS18 (ENSPTIG00000017644)	PSMA8 (ENSPTIG00000005108)	TAF4B (ENSPTIG00000007195) ##22	ENSPTIG00000010059	AQP4 (ENSPTIG00000013254)	CHST9 (ENSPTIG00000014271)	CDH2 (ENSPTIG00000016332)
Panthera_a	ANCESTRAL SPECIES	26	ENSGT00510000048348	ENSGT00940000157008	ENSGT00390000009127	ENSGT00940000156182	ENSGT00940000153902.a	ENSGT00940000155638	ENSGT00950000182917.b	ENSGT00390000000444	ENSGT00940000155295	ENSGT00390000017571	ENSGT00940000162118	ENSGT00940000159287	ENSGT00520000055616.a.q.a.a	ENSGT00940000156352	ENSGT00940000160354	ENSGT00390000011620.a.a.a ##22	ENSGT00940000156453.a	ENSGT00940000156037.a	ENSGT00940000160563	ENSGT00940000155981	ENSGT01030000234624.a.a.b	ENSGT01030000234624.a.a.a	ENSGT01030000234624.a.b	ENSGT01030000234624.b.a.b.a.b	ENSGT01030000234624.b.a.b.b	ENSGT01030000234624.b.a.b.a.a	ENSGT01030000234624.b.a.a	ENSGT00940000153229.A.a.b	ENSGT00940000158138	ENSGT00390000000568	ENSGT00950000182909.b.a.b
leopard	MODERN SPECIES	46	RIOK3 (ENSPPRG00000023302)	RMC1 (ENSPPRG00000001151)	NPC1 (ENSPPRG00000002275)	ANKRD29 (ENSPPRG00000005196)	LAMA3 (ENSPPRG00000001850)	TTC39C (ENSPPRG00000002996)	ENSPPRG00000004985	ENSPPRG00000005488	ENSPPRG00000005863	IMPACT (ENSPPRG00000007184)	HRH4 (ENSPPRG00000007547)	ZNF521 (ENSPPRG00000009183)	ENSPPRG00000018553	SS18 (ENSPPRG00000010055)	PSMA8 (ENSPPRG00000011553)	TAF4B (ENSPPRG00000012654) ##22	ENSPPRG00000016224	AQP4 (ENSPPRG00000019143)	CHST9 (ENSPPRG00000020253)	CDH2 (ENSPPRG00000023850)	ENSPPRG00000023603	DSC3 (ENSPPRG00000000357)	DSC2 (ENSPPRG00000001123)	DSC1 (ENSPPRG00000002669)	DSG1 (ENSPPRG00000003619)	DSG4 (ENSPPRG00000004122)	DSG3 (ENSPPRG00000004874)	ENSPPRG00000005216	TTR (ENSPPRG00000005939)	B4GALT6 (ENSPPRG00000007304)	TRAPPC8 (ENSPPRG00000011622)
lion	MODERN SPECIES	12	TMEM241 (ENSPLOG00000019521)	RIOK3 (ENSPLOG00000019601)	RMC1 (ENSPLOG00000019718)	NPC1 (ENSPLOG00000019965)	ANKRD29 (ENSPLOG00000020030)	LAMA3 (ENSPLOG00000020270)	TTC39C (ENSPLOG00000021350)	ENSPLOG00000021405	OSBPL1A (ENSPLOG00000021464)	IMPACT (ENSPLOG00000021545)	HRH4 (ENSPLOG00000021635)	ZNF521 (ENSPLOG00000021651)	ENSPLOG00000021671	SS18 (ENSPLOG00000021688)	PSMA8 (ENSPLOG00000021774)	TAF4B (ENSPLOG00000021839) ##22	KCTD1 (ENSPLOG00000021888)	AQP4 (ENSPLOG00000021906)	CHST9 (ENSPLOG00000021925)	CDH2 (ENSPLOG00000021952)	ENSPLOG00000021994	DSC3 (ENSPLOG00000022023)	DSC2 (ENSPLOG00000022065)	DSC1 (ENSPLOG00000022127)	DSG1 (ENSPLOG00000022177)	DSG4 (ENSPLOG00000022216)	DSG3 (ENSPLOG00000022243)	DSG2 (ENSPLOG00000022264)	TTR (ENSPLOG00000022283)	B4GALT6 (ENSPLOG00000022300)	TRAPPC8 (ENSPLOG00000022330)
Cat	MODERN SPECIES	243	TMEM241 (ENSFCAG00000038945)	RIOK3 (ENSFCAG00000000517)	ENSFCAG00000035470	RMC1 (ENSFCAG00000000518)	NPC1 (ENSFCAG00000000519)	ANKRD29 (ENSFCAG00000030826)	LAMA3 (ENSFCAG00000009601)	TTC39C (ENSFCAG00000009603)	CABYR (ENSFCAG00000033624)	OSBPL1A (ENSFCAG00000046822)	IMPACT (ENSFCAG00000028133)	HRH4 (ENSFCAG00000010923)	ZNF521 (ENSFCAG00000024512)	SS18 (ENSFCAG00000030098)	PSMA8 (ENSFCAG00000022853)	TAF4B (ENSFCAG00000011715) ##22	KCTD1 (ENSFCAG00000010474)	AQP4 (ENSFCAG00000037651)	CHST9 (ENSFCAG00000003134)	CDH2 (ENSFCAG00000012301)	ENSFCAG00000036706	DSC2 (ENSFCAG00000042132)	DSC1 (ENSFCAG00000000646)	DSG1 (ENSFCAG00000028996)	DSG4 (ENSFCAG00000027450)	DSG3 (ENSFCAG00000044968)	DSG2 (ENSFCAG00000031128)	TTR (ENSFCAG00000011314)	B4GALT6 (ENSFCAG00000019056)	TRAPPC8 (ENSFCAG00000022822)	RNF125 (ENSFCAG00000023041)
Laurasiatheria_c	ANCESTRAL SPECIES	24	ENSGT00400000022086.a ##12	ENSGT00510000048348	ENSGT00940000157008	ENSGT00390000009127	ENSGT00940000156182	ENSGT00940000153902.a	ENSGT00940000155638	ENSGT00950000182917.b	ENSGT00390000000444	ENSGT00940000155295	ENSGT00390000017571	ENSGT00940000162118	ENSGT00940000159287	ENSGT00940000156352	ENSGT00940000160354	ENSGT00390000011620.a.a.a ##22	ENSGT00940000156453.a	ENSGT00940000156037.a	ENSGT00940000160563	ENSGT00940000155981	ENSGT01030000234624.a.a.b	ENSGT01030000234624.a.a.a	ENSGT01030000234624.a.b	ENSGT01030000234624.b.a.b.a.b	ENSGT01030000234624.b.a.b.b	ENSGT01030000234624.b.a.b.a.a	ENSGT01030000234624.b.a.a	ENSGT00940000153229.A.a.b	ENSGT00940000158138	ENSGT00390000000568	ENSGT00950000182909.b.a.b
Equus	ANCESTRAL SPECIES	36	ENSGT00940000155230	ENSGT00940000156220	ENSGT00560000078638	ENSGT00940000158052.a	ENSGT00940000155638	ENSGT00950000182917.b	ENSGT00390000000444	ENSGT00940000155295	ENSGT01090000263359	ENSGT00390000017571	ENSGT00940000162118	ENSGT00940000159287	ENSGT00950000182922.a.a.a.b.a.b.a.b.b	ENSGT00940000156352	ENSGT00940000160354	ENSGT00390000011620.a.a.a ##22	ENSGT00940000156453.a	ENSGT00940000156037.a	ENSGT00940000160563	ENSGT00940000155981	ENSGT01030000234624.a.a.b	ENSGT01030000234624.a.a.a	ENSGT01030000234624.a.b	ENSGT01030000234624.b.a.b.a.b	ENSGT01030000234624.b.a.b.b	ENSGT01030000234624.b.a.b.a.a	ENSGT01030000234624.b.a.a	ENSGT00940000153229.A.a.b	ENSGT00940000158138	ENSGT00390000000568	ENSGT00950000182909.b.a.b
Donkey	MODERN SPECIES	27	DLGAP1 (ENSEASG00005003653)	AKAIN1 (ENSEASG00005038786)	ENSEASG00005004330	ENSEASG00005004417	ENSEASG00005004519	ENSEASG00005029371	ENSEASG00005004560	ENSEASG00005004612	ENSEASG00005005115	IMPACT (ENSEASG00005005120)	HRH4 (ENSEASG00005029823)	ZNF521 (ENSEASG00005005129)	ENSEASG00005005135	PSMA8 (ENSEASG00005005145)	SS18 (ENSEASG00005005139)	TAF4B (ENSEASG00005005256) ##22	KCTD1 (ENSEASG00005005261)	AQP4 (ENSEASG00005005263)	CHST9 (ENSEASG00005027091)	CDH2 (ENSEASG00005016811)	ENSEASG00005024422	DSC3 (ENSEASG00005016795)	DSC2 (ENSEASG00005016787)	DSC1 (ENSEASG00005016782)	DSG1 (ENSEASG00005016766)	DSG4 (ENSEASG00005016759)	DSG3 (ENSEASG00005016749)	DSG2 (ENSEASG00005016682)	TTR (ENSEASG00005034244)	B4GALT6 (ENSEASG00005016659)	TRAPPC8 (ENSEASG00005016655)
Horse	MODERN SPECIES	29	ZBTB14 (ENSECAG00000019218)	LAMA3 (ENSECAG00000021277)	ENSECAG00000054828	ENSECAG00000043961	TTC39C (ENSECAG00000010545)	CABYR (ENSECAG00000014148)	OSBPL1A (ENSECAG00000015182)	ENSECAG00000056623	IMPACT (ENSECAG00000020098)	HRH4 (ENSECAG00000006494)	ZNF521 (ENSECAG00000006546)	ENSECAG00000004392	ENSECAG00000049495	PSMA8 (ENSECAG00000013028)	SS18 (ENSECAG00000007703)	TAF4B (ENSECAG00000016769) ##22	KCTD1 (ENSECAG00000031182)	AQP4 (ENSECAG00000004242)	ENSECAG00000058320	CHST9 (ENSECAG00000008182)	CDH2 (ENSECAG00000009663)	ENSECAG00000045544	DSC3 (ENSECAG00000022564)	DSC2 (ENSECAG00000007761)	DSC1 (ENSECAG00000013809)	DSG1 (ENSECAG00000018040)	DSG4 (ENSECAG00000006970)	DSG3 (ENSECAG00000044697)	DSG2 (ENSECAG00000013616)	B4GALT6 (ENSECAG00000017478)	TTR (ENSECAG00000015875)
Chiroptera	ANCESTRAL SPECIES	26	ENSGT00530000063835.b ##11	ENSGT00400000022086.a ##12	ENSGT00510000048348	ENSGT00940000157008	ENSGT00390000009127	ENSGT00940000156182	ENSGT00940000153902.a	ENSGT00940000155638	ENSGT00950000182917.b	ENSGT00390000000444.b	ENSGT00940000155295	ENSGT00390000017571	ENSGT00940000159287	ENSGT00940000156352	ENSGT00940000160354	ENSGT00390000011620.a.a.a ##22	ENSGT00940000156453.a	ENSGT00940000156037.a	ENSGT00940000160563	ENSGT00940000155981	ENSGT01030000234624.a.a.b	ENSGT01030000234624.a.a.a	ENSGT01030000234624.a.b	ENSGT01030000234624.b.a.b.a.b	ENSGT01030000234624.b.a.b.b	ENSGT01030000234624.b.a.b.a.a	ENSGT01030000234624.b.a.a	ENSGT00940000153229.A.a.b	ENSGT00940000158138	ENSGT00390000000568	ENSGT00950000182909.b.a.b
Microchiroptera	ANCESTRAL SPECIES	26	ENSGT00940000160814	ENSGT00530000063835.b ##11	ENSGT00400000022086.a ##12	ENSGT00510000048348	ENSGT00940000157008	ENSGT00390000009127	ENSGT00940000156182	ENSGT00940000153902.a	ENSGT00940000155638	ENSGT00390000000444.b	ENSGT00940000155295	ENSGT00390000017571	ENSGT00940000159287	ENSGT00940000156352	ENSGT00940000160354	ENSGT00390000011620.a.a.a ##22	ENSGT00940000156453.a	ENSGT00940000156037.a	ENSGT00940000160563	ENSGT00940000155981	ENSGT01030000234624.a.a.b	ENSGT01030000234624.a.a.a	ENSGT01030000234624.a.b	ENSGT01030000234624.b.a.b.a.b	ENSGT01030000234624.b.a.b.b	ENSGT01030000234624.b.a.b.a.a	ENSGT01030000234624.b.a.a	ENSGT00940000153229.A.a.b	ENSGT00940000158138	ENSGT00390000000568	ENSGT00950000182909.b.a.b
Greater horseshoe bat	MODERN SPECIES	10	GATA6 (ENSRFEG00010019389)	RBBP8 (ENSRFEG00010019440) ##11	CABLES1 (ENSRFEG00010019516) ##12	TMEM241 (ENSRFEG00010019573)	RIOK3 (ENSRFEG00010019628)	RMC1 (ENSRFEG00010019707)	NPC1 (ENSRFEG00010019799)	ANKRD29 (ENSRFEG00010019862)	LAMA3 (ENSRFEG00010020190)	ENSRFEG00010021435	OSBPL1A (ENSRFEG00010021452)	IMPACT (ENSRFEG00010021480)	ZNF521 (ENSRFEG00010021509)	SS18 (ENSRFEG00010021529)	PSMA8 (ENSRFEG00010021557)	TAF4B (ENSRFEG00010021574) ##22	KCTD1 (ENSRFEG00010021589)	AQP4 (ENSRFEG00010021600)	CHST9 (ENSRFEG00010021612)	CDH2 (ENSRFEG00010021632)	DSC3 (ENSRFEG00010021665)	DSC2 (ENSRFEG00010021679)	DSC1 (ENSRFEG00010021707)	DSG1 (ENSRFEG00010021727)	DSG4 (ENSRFEG00010021739)	DSG3 (ENSRFEG00010021747)	DSG2 (ENSRFEG00010021760)	TTR (ENSRFEG00010021771)	B4GALT6 (ENSRFEG00010021781)	TRAPPC8 (ENSRFEG00010021804)	RNF125 (ENSRFEG00010021841)
Microbat	MODERN SPECIES	1699																ENSMLUG00000016736 ##22	ENSMLUG00000000698
Megabat	MODERN SPECIES	980														SS18 (ENSPVAG00000009955)	PSMA8 (ENSPVAG00000009963)	TAF4B (ENSPVAG00000009968) ##22	ENSPVAG00000009970
Euarchontoglires	ANCESTRAL SPECIES	22	ENSGT00400000022086.a ##12	ENSGT00510000048348	ENSGT00940000157008	ENSGT00390000009127	ENSGT00940000156182	ENSGT00940000153902.a	ENSGT00940000155638	ENSGT00950000182917.b	ENSGT00390000000444	ENSGT00940000155295	ENSGT00390000017571	ENSGT00940000162118	ENSGT00940000159287	ENSGT00940000156352	ENSGT00940000160354	ENSGT00390000011620.a.a.a ##22	ENSGT00940000156453.a	ENSGT00940000156037.a	ENSGT00940000160563	ENSGT00940000155981	ENSGT01030000234624.a.a.b	ENSGT01030000234624.a.a.a	ENSGT01030000234624.a.b	ENSGT01030000234624.b.a.b.a.b	ENSGT01030000234624.b.a.b.b	ENSGT01030000234624.b.a.b.a.a	ENSGT01030000234624.b.a.a	ENSGT00940000153229.A.a.b	ENSGT00940000158138	ENSGT00390000000568	ENSGT00950000182909.b.a.b
Primates	ANCESTRAL SPECIES	24	ENSGT00400000022086.a ##12	ENSGT00510000048348	ENSGT00940000157008	ENSGT00390000009127	ENSGT00940000156182	ENSGT00940000153902.a	ENSGT00940000155638	ENSGT00950000182917.b	ENSGT00390000000444	ENSGT00940000155295	ENSGT00390000017571	ENSGT00940000162118	ENSGT00940000159287	ENSGT00940000156352	ENSGT00940000160354	ENSGT00390000011620.a.a.a ##22	ENSGT00940000156453.a	ENSGT00940000156037.a	ENSGT00940000160563	ENSGT00940000155981	ENSGT01030000234624.a.a.b	ENSGT01030000234624.a.a.a	ENSGT01030000234624.a.b	ENSGT01030000234624.b.a.b.a.b	ENSGT01030000234624.b.a.b.b	ENSGT01030000234624.b.a.b.a.a	ENSGT01030000234624.b.a.a	ENSGT00940000153229.A.a.b	ENSGT00940000158138	ENSGT00390000000568	ENSGT00950000182909.b.a.b
Haplorrhini	ANCESTRAL SPECIES	25	ENSGT00400000022086.a ##12	ENSGT00510000048348	ENSGT00940000157008	ENSGT00390000009127	ENSGT00940000156182	ENSGT00940000153902.a	ENSGT00940000155638	ENSGT00950000182917.b	ENSGT00390000000444	ENSGT00940000155295	ENSGT00390000017571	ENSGT00940000162118	ENSGT00940000159287	ENSGT00940000156352	ENSGT00940000160354	ENSGT00390000011620.a.a.a ##22	ENSGT00940000156453.a	ENSGT00940000156037.a	ENSGT00940000160563	ENSGT00940000155981	ENSGT01030000234624.a.a.b	ENSGT01030000234624.a.a.a	ENSGT01030000234624.a.b	ENSGT01030000234624.b.a.b.a.b	ENSGT01030000234624.b.a.b.b	ENSGT01030000234624.b.a.b.a.a	ENSGT01030000234624.b.a.a	ENSGT00940000153229.A.a.b	ENSGT00940000158138	ENSGT00390000000568	ENSGT00950000182909.b.a.b
Simiiformes	ANCESTRAL SPECIES	24	ENSGT00510000048348	ENSGT00940000157008	ENSGT00390000009127	ENSGT00940000156182	ENSGT00940000153902.a	ENSGT00940000155638	ENSGT01000000215939	ENSGT00950000182917.b	ENSGT00390000000444	ENSGT00940000155295	ENSGT00390000017571	ENSGT00940000162118	ENSGT00940000159287	ENSGT00940000156352	ENSGT00940000160354	ENSGT00390000011620.a.a.a ##22	ENSGT00940000156453.a.c.a	ENSGT00940000156037.a	ENSGT00940000160563	ENSGT00940000154281.m.b.a.b.b	ENSGT00940000155981	ENSGT01030000234624.a.a.b	ENSGT01030000234624.a.a.a	ENSGT01030000234624.a.b	ENSGT01030000234624.b.a.b.a.b	ENSGT01030000234624.b.a.b.b	ENSGT01030000234624.b.a.b.a.a	ENSGT01030000234624.b.a.a	ENSGT00940000153229.A.a.b	ENSGT00940000158138	ENSGT00390000000568
Platyrrhini	DUPLICATION
Platyrrhini	ANCESTRAL SPECIES	26	ENSGT00510000048348	ENSGT00940000157008	ENSGT00390000009127	ENSGT00940000156182	ENSGT00940000153902.a	ENSGT00940000155638	ENSGT01000000215939	ENSGT00950000182917.b	ENSGT00390000000444	ENSGT00940000155295	ENSGT00390000017571	ENSGT00940000162118	ENSGT00940000159287	ENSGT00940000156352	ENSGT00940000160354	ENSGT00390000011620.a.a.a.c ##22	ENSGT00940000156453.a.d	ENSGT00940000156037.a	ENSGT00940000160563	ENSGT00940000154281.m.b.a.b.b	ENSGT00940000155981	ENSGT00940000154875.l	ENSGT00950000182895.a.a.a.b.f	ENSGT01030000234624.a.a.b	ENSGT01030000234624.a.a.a	ENSGT01030000234624.a.b	ENSGT01030000234624.b.a.b.a.b	ENSGT01030000234624.b.a.b.b	ENSGT01030000234624.b.a.b.a.a	ENSGT01030000234624.b.a.a	ENSGT00940000153229.A.a.b
Cebidae	ANCESTRAL SPECIES	28	ENSGT00510000048348	ENSGT00940000157008	ENSGT00390000009127	ENSGT00940000156182	ENSGT00940000153902.a	ENSGT00940000155638	ENSGT01000000215939	ENSGT00950000182917.b	ENSGT00390000000444	ENSGT00940000155295	ENSGT00390000017571	ENSGT00940000162118	ENSGT00940000159287	ENSGT00940000156352	ENSGT00940000160354	ENSGT00390000011620.a.a.a.c ##22	ENSGT00940000156453.a.d	ENSGT00940000156037.a	ENSGT00940000160563	ENSGT00940000155981	ENSGT00940000154875.l	ENSGT00950000182895.a.a.a.b.f	ENSGT01030000234624.a.a.b	ENSGT01030000234624.a.a.a	ENSGT01030000234624.a.b	ENSGT01030000234624.b.a.b.a.b	ENSGT01030000234624.b.a.b.b	ENSGT01030000234624.b.a.b.a.a	ENSGT01030000234624.b.a.a	ENSGT00940000153229.A.a.b	ENSGT00940000158138
Marmoset	MODERN SPECIES	4	RIOK3 (ENSCJAG00000020556)	RMC1 (ENSCJAG00000020571)	NPC1 (ENSCJAG00000020581)	ANKRD29 (ENSCJAG00000020590)	LAMA3 (ENSCJAG00000020598)	TTC39C (ENSCJAG00000020629)	ENSCJAG00000057247	ENSCJAG00000020641	OSBPL1A (ENSCJAG00000020648)	IMPACT (ENSCJAG00000020674)	HRH4 (ENSCJAG00000020684)	ENSCJAG00000081714	ENSCJAG00000070295	ZNF521 (ENSCJAG00000020691)	SS18 (ENSCJAG00000020695)	TAF4B (ENSCJAG00000020711) ##22	PSMA8 (ENSCJAG00000020707)	ENSCJAG00000076993	ENSCJAG00000072314	KCTD1 (ENSCJAG00000020728)	ENSCJAG00000080873	ENSCJAG00000073114	AQP4 (ENSCJAG00000020734)	CHST9 (ENSCJAG00000020745)	ENSCJAG00000081014	ENSCJAG00000082900	CDH2 (ENSCJAG00000020748)	ENSCJAG00000082045	ENSCJAG00000058738	ENSCJAG00000057254	DSC2 (ENSCJAG00000020776)
Cebidae_a	ANCESTRAL SPECIES	23	ENSGT00510000048348	ENSGT00940000157008	ENSGT00390000009127	ENSGT00940000156182	ENSGT00940000153902.a	ENSGT00940000155638	ENSGT01000000215939	ENSGT00950000182917.b	ENSGT00390000000444.i	ENSGT00940000155295	ENSGT00390000017571	ENSGT00940000162118	ENSGT00940000159287	ENSGT00940000156352	ENSGT00940000160354	ENSGT00390000011620.a.a.a.c ##22	ENSGT00940000156453.a.d	ENSGT00940000156037.a	ENSGT00940000160563	ENSGT00940000155981	ENSGT00940000154875.l	ENSGT01030000234624.a.a.b	ENSGT01030000234624.a.a.a	ENSGT01030000234624.a.b	ENSGT01030000234624.b.a.b.a.b	ENSGT01030000234624.b.a.b.b	ENSGT01030000234624.b.a.b.a.a	ENSGT01030000234624.b.a.a	ENSGT00940000153229.A.a.b	ENSGT00940000158138	ENSGT00390000000568
Capuchin	MODERN SPECIES	12	RIOK3 (ENSCCAG00000028338)	RMC1 (ENSCCAG00000030450)	NPC1 (ENSCCAG00000035662)	ANKRD29 (ENSCCAG00000037439)	LAMA3 (ENSCCAG00000032219)	ENSCCAG00000030839	TTC39C (ENSCCAG00000025379)	ENSCCAG00000021797	OSBPL1A (ENSCCAG00000032012)	IMPACT (ENSCCAG00000036594)	HRH4 (ENSCCAG00000032343)	ZNF521 (ENSCCAG00000029899)	ENSCCAG00000020450	SS18 (ENSCCAG00000021245)	PSMA8 (ENSCCAG00000035292)	TAF4B (ENSCCAG00000033480) ##22	ENSCCAG00000037563	ENSCCAG00000005936	KCTD1 (ENSCCAG00000033186)	ENSCCAG00000018132	AQP4 (ENSCCAG00000021505)	ENSCCAG00000018909	CHST9 (ENSCCAG00000020066)	CDH2 (ENSCCAG00000021037)	ENSCCAG00000035350	ENSCCAG00000037382	ENSCCAG00000021923	ENSCCAG00000028020	ENSCCAG00000031616	DSC3 (ENSCCAG00000037410)	DSC2 (ENSCCAG00000034283)
Bolivian squirrel monkey	MODERN SPECIES	53	TMEM241 (ENSSBOG00000035556)	RIOK3 (ENSSBOG00000034387)	RMC1 (ENSSBOG00000020943)	NPC1 (ENSSBOG00000032420)	ANKRD29 (ENSSBOG00000035888)	LAMA3 (ENSSBOG00000032398)	ENSSBOG00000032927	TTC39C (ENSSBOG00000031876)	ENSSBOG00000019153	OSBPL1A (ENSSBOG00000019319)	IMPACT (ENSSBOG00000030096)	HRH4 (ENSSBOG00000025937)	ZNF521 (ENSSBOG00000035381)	SS18 (ENSSBOG00000032909)	PSMA8 (ENSSBOG00000023058)	TAF4B (ENSSBOG00000023747) ##22	ENSSBOG00000028034	ENSSBOG00000036166	AQP4 (ENSSBOG00000017318)	CHST9 (ENSSBOG00000026159)	CDH2 (ENSSBOG00000033079)	ENSSBOG00000027935	ENSSBOG00000029309	ENSSBOG00000027185	DSC2 (ENSSBOG00000010604)	DSG1 (ENSSBOG00000028425)	DSG3 (ENSSBOG00000026324)	DSG2 (ENSSBOG00000028345)	TTR (ENSSBOG00000031047)	B4GALT6 (ENSSBOG00000034735)	TRAPPC8 (ENSSBOG00000022914)
Mas night monkey	MODERN SPECIES	424															PSMA8 (ENSANAG00000021002)	ENSANAG00000031500 ##22	ENSANAG00000033025	ENSANAG00000032744	ENSANAG00000023037	AQP4 (ENSANAG00000036347)	CHST9 (ENSANAG00000033005)	ENSANAG00000021369	CDH2 (ENSANAG00000020532)	ENSANAG00000024602	ENSANAG00000034505	ENSANAG00000023813	DSC3 (ENSANAG00000025296)	DSC2 (ENSANAG00000036335)	DSC1 (ENSANAG00000002010)	DSG1 (ENSANAG00000018126)	DSG4 (ENSANAG00000029653)
Platyrrhini	ANCESTRAL SPECIES																	ENSGT00390000011620.a.a.a.d ##22
Mas night monkey	MODERN SPECIES	902	CBY2 (ENSANAG00000028568)	SIAH3 (ENSANAG00000027513)	ZC3H13 (ENSANAG00000033079)	CPB2 (ENSANAG00000024089)	LCP1 (ENSANAG00000028550)	LRRC63 (ENSANAG00000029208)	RUBCNL (ENSANAG00000025520)	ENSANAG00000021038	LRCH1 (ENSANAG00000032605)	ENSANAG00000033549	HTR2A (ENSANAG00000032310)	ENSANAG00000029501	ENSANAG00000028654	ENSANAG00000025311	NUDT15 (ENSANAG00000023666)	ENSANAG00000027167 ##22	ENSANAG00000026714	ITM2B (ENSANAG00000029180)	ENSANAG00000011241	LPAR6 (ENSANAG00000016578)	RB1 (ENSANAG00000022056)	ENSANAG00000031593	RCBTB2 (ENSANAG00000023045)	ENSANAG00000013536	CYSLTR2 (ENSANAG00000024658)	FNDC3A (ENSANAG00000029046)	MLNR (ENSANAG00000037292)	CDADC1 (ENSANAG00000024556)	CAB39L (ENSANAG00000024473)
Catarrhini	ANCESTRAL SPECIES	23	ENSGT00510000048348	ENSGT00940000157008	ENSGT00390000009127	ENSGT00940000156182	ENSGT00940000153902.a	ENSGT00940000155638	ENSGT01000000215939	ENSGT00950000182917.b	ENSGT00390000000444	ENSGT00940000155295	ENSGT00390000017571	ENSGT00940000162118	ENSGT00940000159287	ENSGT00940000156352	ENSGT00940000160354	ENSGT00390000011620.a.a.a ##22	ENSGT00940000156453.a.c.a	ENSGT00940000156037.a	ENSGT00940000160563	ENSGT00940000154281.m.b.a.b.b	ENSGT00940000155981	ENSGT00940000154875.l	ENSGT01030000234624.a.a.b	ENSGT01030000234624.a.a.a	ENSGT01030000234624.a.b	ENSGT01030000234624.b.a.b.a.b	ENSGT01030000234624.b.a.b.b	ENSGT01030000234624.b.a.b.a.a	ENSGT01030000234624.b.a.a	ENSGT00940000153229.A.a.b	ENSGT00940000158138
Hominoidea	ANCESTRAL SPECIES	24	ENSGT00510000048348	ENSGT00940000157008	ENSGT00390000009127	ENSGT00940000156182	ENSGT00940000153902.a	ENSGT00940000155638	ENSGT01000000215939	ENSGT00950000182917.b	ENSGT00390000000444	ENSGT00940000155295	ENSGT00390000017571	ENSGT00940000162118	ENSGT00940000159287	ENSGT00940000156352	ENSGT00940000160354	ENSGT00390000011620.a.a.a ##22	ENSGT00940000156453.a.c.a	ENSGT00910000146942	ENSGT00390000011417.k.b	ENSGT00390000002408.c.a.b	ENSGT00940000156037.a	ENSGT00940000160563	ENSGT00940000154281.m.b.a.b.b	ENSGT00940000155981	ENSGT00940000154875.l	ENSGT01030000234624.a.a.b	ENSGT01030000234624.a.a.a	ENSGT01030000234624.a.b	ENSGT01030000234624.b.a.b.a.b	ENSGT01030000234624.b.a.b.b	ENSGT01030000234624.b.a.b.a.a
Hominidae	ANCESTRAL SPECIES	24	ENSGT00400000022086.a ##12	ENSGT00510000048348	ENSGT00940000157008	ENSGT00390000009127	ENSGT00940000156182	ENSGT00940000153902.a	ENSGT00940000155638	ENSGT00950000182917.b	ENSGT00390000000444	ENSGT00940000155295	ENSGT00390000017571	ENSGT00940000162118	ENSGT00940000159287	ENSGT00940000156352	ENSGT00940000160354	ENSGT00390000011620.a.a.a ##22	ENSGT00940000156453.a.c.a	ENSGT00910000146942	ENSGT00390000011417.k.b	ENSGT00390000002408.c.a.b	ENSGT00940000156037.a	ENSGT00940000160563	ENSGT00940000155981	ENSGT01030000234624.a.a.b	ENSGT01030000234624.a.a.a	ENSGT01030000234624.a.b	ENSGT01030000234624.b.a.b.a.b	ENSGT01030000234624.b.a.b.b	ENSGT01030000234624.b.a.b.a.a	ENSGT01030000234624.b.a.a	ENSGT00940000153229.A.a.b
Homo/Pan/Gorilla group	ANCESTRAL SPECIES	26	ENSGT00400000022086.a ##12	ENSGT00510000048348	ENSGT00940000157008	ENSGT00390000009127	ENSGT00940000156182	ENSGT00940000153902.a	ENSGT00940000155638	ENSGT00950000182917.b	ENSGT00390000000444	ENSGT00940000155295	ENSGT00390000017571	ENSGT00940000162118	ENSGT00940000159287	ENSGT00940000156352	ENSGT00940000160354	ENSGT00390000011620.a.a.a ##22	ENSGT00940000156453.a.c.a	ENSGT00910000146942	ENSGT00390000011417.k.b	ENSGT00390000002408.c.a.b	ENSGT00940000156037.a	ENSGT00940000160563	ENSGT00940000155981	ENSGT01030000234624.a.a.b	ENSGT01030000234624.a.a.a	ENSGT01030000234624.a.b	ENSGT01030000234624.b.a.b.a.b	ENSGT01030000234624.b.a.b.b	ENSGT01030000234624.b.a.b.a.a	ENSGT01030000234624.b.a.a	ENSGT00940000153229.A.a.b
Gorilla	MODERN SPECIES	9	ENSGGOG00000003409	ENSGGOG00000036734	RMC1 (ENSGGOG00000005106)	NPC1 (ENSGGOG00000005117)	ANKRD29 (ENSGGOG00000005123)	ENSGGOG00000024583	LAMA3 (ENSGGOG00000006722)	TTC39C (ENSGGOG00000003945)	ENSGGOG00000006062	OSBPL1A (ENSGGOG00000006066)	ENSGGOG00000042431	HRH4 (ENSGGOG00000005579)	ZNF521 (ENSGGOG00000027325)	SS18 (ENSGGOG00000004461)	PSMA8 (ENSGGOG00000016377)	TAF4B (ENSGGOG00000003977) ##22	ENSGGOG00000040020	ENSGGOG00000013560	ENSGGOG00000038362	CIAPIN1 (ENSGGOG00000022607)	ENSGGOG00000023856	AQP4 (ENSGGOG00000010474)	CHST9 (ENSGGOG00000025951)	CDH2 (ENSGGOG00000012100)	DSC3 (ENSGGOG00000003206)	DSC2 (ENSGGOG00000006133)	DSC1 (ENSGGOG00000013528)	DSG1 (ENSGGOG00000000138)	DSG4 (ENSGGOG00000012707)	DSG3 (ENSGGOG00000001155)	DSG2 (ENSGGOG00000008855)
Homo/Pan group	ANCESTRAL SPECIES	25	ENSGT00400000022086.a ##12	ENSGT00510000048348	ENSGT00940000157008	ENSGT00390000009127	ENSGT00940000156182	ENSGT00940000153902.a	ENSGT00940000155638	ENSGT00950000182917.b	ENSGT00390000000444	ENSGT00940000155295	ENSGT00390000017571	ENSGT00940000162118	ENSGT00940000159287	ENSGT00940000156352	ENSGT00940000160354	ENSGT00390000011620.a.a.a ##22	ENSGT00940000156453.a.c.a	ENSGT00910000146942	ENSGT00390000011417.k.b	ENSGT00390000002408.c.a.b	ENSGT00940000156037.a	ENSGT00940000160563	ENSGT00940000155981	ENSGT01030000234624.a.a.b	ENSGT01030000234624.a.a.a	ENSGT01030000234624.a.b	ENSGT01030000234624.b.a.b.a.b	ENSGT01030000234624.b.a.b.b	ENSGT01030000234624.b.a.b.a.a	ENSGT01030000234624.b.a.a	ENSGT00940000153229.A.a.b
Human	MODERN SPECIES	9	CABLES1 (ENSG00000134508) ##12	TMEM241 (ENSG00000134490)	RIOK3 (ENSG00000101782)	RMC1 (ENSG00000141452)	NPC1 (ENSG00000141458)	ANKRD29 (ENSG00000154065)	LAMA3 (ENSG00000053747)	TTC39C (ENSG00000168234)	CABYR (ENSG00000154040)	OSBPL1A (ENSG00000141447)	IMPACT (ENSG00000154059)	HRH4 (ENSG00000134489)	ZNF521 (ENSG00000198795)	SS18 (ENSG00000141380)	PSMA8 (ENSG00000154611)	TAF4B (ENSG00000141384) ##22	KCTD1 (ENSG00000134504)	AQP4 (ENSG00000171885)	CHST9 (ENSG00000154080)	CDH2 (ENSG00000170558)	DSC3 (ENSG00000134762)	DSC2 (ENSG00000134755)	DSC1 (ENSG00000134765)	DSG1 (ENSG00000134760)	DSG4 (ENSG00000175065)	DSG3 (ENSG00000134757)	DSG2 (ENSG00000046604)	TTR (ENSG00000118271)	B4GALT6 (ENSG00000118276)	SLC25A52 (ENSG00000141437)	TRAPPC8 (ENSG00000153339)
Pan	ANCESTRAL SPECIES	24	ENSGT00400000022086.a ##12	ENSGT00510000048348	ENSGT00940000157008	ENSGT00390000009127	ENSGT00940000156182	ENSGT00940000153902.a	ENSGT00940000155638	ENSGT00950000182917.b	ENSGT00390000000444	ENSGT00940000155295	ENSGT00390000017571	ENSGT00940000162118	ENSGT00940000159287	ENSGT00940000156352	ENSGT00940000160354	ENSGT00390000011620.a.a.a ##22	ENSGT00940000156453.a.c.a	ENSGT00910000146942	ENSGT00390000011417.k.b	ENSGT00390000002408.c.a.b	ENSGT00940000156037.a	ENSGT00940000160563	ENSGT00940000154281.m.b.a.b.b	ENSGT00910000148296	ENSGT00940000155981	ENSGT01030000234624.a.a.b	ENSGT01030000234624.a.a.a	ENSGT01030000234624.a.b	ENSGT01030000234624.b.a.b.a.b	ENSGT01030000234624.b.a.b.b	ENSGT01030000234624.b.a.b.a.a
Bonobo	MODERN SPECIES	9	TMEM241 (ENSPPAG00000029062)	RIOK3 (ENSPPAG00000030258)	RMC1 (ENSPPAG00000033058)	NPC1 (ENSPPAG00000017628)	ANKRD29 (ENSPPAG00000031520)	LAMA3 (ENSPPAG00000014480)	TTC39C (ENSPPAG00000024662)	ENSPPAG00000038669	OSBPL1A (ENSPPAG00000028012)	IMPACT (ENSPPAG00000032808)	HRH4 (ENSPPAG00000038829)	ENSPPAG00000040491	ZNF521 (ENSPPAG00000032100)	SS18 (ENSPPAG00000037543)	PSMA8 (ENSPPAG00000027989)	TAF4B (ENSPPAG00000033308) ##22	ENSPPAG00000034206	ENSPPAG00000036748	ENSPPAG00000028147	ENSPPAG00000029862	ENSPPAG00000030931	AQP4 (ENSPPAG00000031870)	CHST9 (ENSPPAG00000030236)	ENSPPAG00000032172	ENSPPAG00000023873	CDH2 (ENSPPAG00000037338)	DSC3 (ENSPPAG00000041022)	DSC2 (ENSPPAG00000036483)	DSC1 (ENSPPAG00000036726)	DSG1 (ENSPPAG00000041927)	DSG4 (ENSPPAG00000041024)
Chimpanzee	MODERN SPECIES	9	CABLES1 (ENSPTRG00000009916) ##12	TMEM241 (ENSPTRG00000009917)	RIOK3 (ENSPTRG00000009918)	RMC1 (ENSPTRG00000009919)	NPC1 (ENSPTRG00000009920)	ANKRD29 (ENSPTRG00000009921)	LAMA3 (ENSPTRG00000009922)	TTC39C (ENSPTRG00000009923)	CABYR (ENSPTRG00000009925)	OSBPL1A (ENSPTRG00000009926)	IMPACT (ENSPTRG00000009927)	HRH4 (ENSPTRG00000009928)	ZNF521 (ENSPTRG00000022783)	SS18 (ENSPTRG00000009931)	PSMA8 (ENSPTRG00000009933)	TAF4B (ENSPTRG00000009934) ##22	ENSPTRG00000052077	KCTD1 (ENSPTRG00000009935)	ENSPTRG00000046641	ENSPTRG00000041531	ENSPTRG00000040512	AQP4 (ENSPTRG00000009936)	CHST9 (ENSPTRG00000009938)	ENSPTRG00000049096	ENSPTRG00000048916	CDH2 (ENSPTRG00000009939)	DSC3 (ENSPTRG00000009940)	DSC2 (ENSPTRG00000009941)	DSC1 (ENSPTRG00000009943)	DSG1 (ENSPTRG00000009945)	DSG4 (ENSPTRG00000009946)
Orangutan	MODERN SPECIES	9	RBBP8 (ENSPPYG00000009059) ##11	CABLES1 (ENSPPYG00000009060) ##12	TMEM241 (ENSPPYG00000009061)	RIOK3 (ENSPPYG00000009062)	RMC1 (ENSPPYG00000009063)	NPC1 (ENSPPYG00000009064)	ANKRD29 (ENSPPYG00000009065)	LAMA3 (ENSPPYG00000029871)	TTC39C (ENSPPYG00000009066)	ENSPPYG00000009069	DKFZP469O0726 (ENSPPYG00000009070)	ENSPPYG00000009072	ZNF521 (ENSPPYG00000009074)	SS18 (ENSPPYG00000009075)	PSMA8 (ENSPPYG00000009076)	TAF4B (ENSPPYG00000009077) ##22	KCTD1 (ENSPPYG00000009078)	ENSPPYG00000038429	ENSPPYG00000035338	AQP4 (ENSPPYG00000037974)	CHST9 (ENSPPYG00000009080)	CDH2 (ENSPPYG00000009082)	DSC3 (ENSPPYG00000009083)	DSC2 (ENSPPYG00000009084)	DSC1 (ENSPPYG00000009085)	DSG1 (ENSPPYG00000009086)	DSG4 (ENSPPYG00000009087)	DSG3 (ENSPPYG00000009088)	DSG2 (ENSPPYG00000009089)	TTR (ENSPPYG00000038498)	B4GALT6 (ENSPPYG00000009091)
Gibbon	MODERN SPECIES	19	RMC1 (ENSNLEG00000006736)	NPC1 (ENSNLEG00000006732)	ANKRD29 (ENSNLEG00000006727)	LAMA3 (ENSNLEG00000006636)	ENSNLEG00000029850	TTC39C (ENSNLEG00000006631)	ENSNLEG00000006627	ENSNLEG00000006588	IMPACT (ENSNLEG00000006582)	ENSNLEG00000006579	ENSNLEG00000034303	ZNF521 (ENSNLEG00000006568)	SS18 (ENSNLEG00000006558)	PSMA8 (ENSNLEG00000006555)	ENSNLEG00000006553	TAF4B (ENSNLEG00000006545) ##22	ENSNLEG00000031533	KCTD1 (ENSNLEG00000006544)	ENSNLEG00000028506	AQP4 (ENSNLEG00000006540)	CHST9 (ENSNLEG00000006536)	ENSNLEG00000028428	CDH2 (ENSNLEG00000006531)	ENSNLEG00000030976	DSC3 (ENSNLEG00000006518)	DSC2 (ENSNLEG00000026724)	DSC1 (ENSNLEG00000006503)	DSG1 (ENSNLEG00000006497)	DSG4 (ENSNLEG00000006477)	DSG3 (ENSNLEG00000006471)	DSG2 (ENSNLEG00000006455)
Cercopithecidae	ANCESTRAL SPECIES	25	ENSGT00510000048348	ENSGT00940000157008	ENSGT00390000009127	ENSGT00940000156182	ENSGT00940000153902.a	ENSGT00940000155638	ENSGT01000000215939	ENSGT00950000182917.b	ENSGT00390000000444	ENSGT00940000155295	ENSGT00390000017571	ENSGT00940000162118	ENSGT00940000159287	ENSGT00940000156352	ENSGT00940000160354	ENSGT00390000011620.a.a.a ##22	ENSGT00940000156453.a.c.a	ENSGT00910000146942	ENSGT00390000002408.c.a.b	ENSGT00940000156037.a	ENSGT00940000160563	ENSGT00940000154281.m.b.a.b.b	ENSGT00940000155981	ENSGT00940000154875.l	ENSGT01030000234624.a.a.b	ENSGT01030000234624.a.a.a	ENSGT01030000234624.a.b	ENSGT01030000234624.b.a.b.a.b	ENSGT01030000234624.b.a.b.b	ENSGT01030000234624.b.a.b.a.a	ENSGT01030000234624.b.a.a
Cercopithecinae	ANCESTRAL SPECIES	22	ENSGT00510000048348	ENSGT00940000157008	ENSGT00390000009127	ENSGT00940000156182	ENSGT00940000153902.a	ENSGT00940000155638	ENSGT01000000215939	ENSGT00950000182917.b	ENSGT00390000000444	ENSGT00940000155295	ENSGT00390000017571.k	ENSGT00940000162118	ENSGT00940000159287	ENSGT00940000156352	ENSGT00940000160354	ENSGT00390000011620.a.a.a ##22	ENSGT00940000156453.a.c.a	ENSGT00910000146942	ENSGT00390000002408.c.a.b	ENSGT00940000156037.a	ENSGT00940000160563	ENSGT00940000154281.m.b.a.b.b	ENSGT00940000155981	ENSGT00940000154875.l	ENSGT01030000234624.a.a.b	ENSGT01030000234624.a.a.a	ENSGT01030000234624.a.b	ENSGT01030000234624.b.a.b.a.b	ENSGT01030000234624.b.a.b.b	ENSGT01030000234624.b.a.b.a.a	ENSGT01030000234624.b.a.a
Cercopithecinae_a	ANCESTRAL SPECIES	21	ENSGT00510000048348	ENSGT00940000157008	ENSGT00390000009127	ENSGT00940000156182	ENSGT00940000153902.a	ENSGT00940000155638	ENSGT01000000215939	ENSGT00950000182917.b	ENSGT00390000000444	ENSGT00940000155295	ENSGT00390000017571.k	ENSGT00940000162118	ENSGT00940000159287	ENSGT00940000156352	ENSGT00940000160354	ENSGT00390000011620.a.a.a ##22	ENSGT00940000156453.a.c.a	ENSGT00910000146942	ENSGT00390000002408.c.a.b	ENSGT00940000156037.a	ENSGT00940000160563	ENSGT00940000154281.m.b.a.b.b	ENSGT00940000155981	ENSGT00940000154875.l	ENSGT01030000234624.a.a.b	ENSGT01030000234624.a.a.a	ENSGT01030000234624.a.b	ENSGT01030000234624.b.a.b.a.b	ENSGT01030000234624.b.a.b.b	ENSGT01030000234624.b.a.b.a.a	ENSGT01030000234624.b.a.a
Macaca	ANCESTRAL SPECIES	22	ENSGT00400000022086.a ##12	ENSGT00510000048348	ENSGT00940000157008	ENSGT00390000009127	ENSGT00940000156182	ENSGT00940000153902.a	ENSGT00940000155638	ENSGT00950000182917.b	ENSGT00390000000444	ENSGT00940000155295	ENSGT00390000017571.k	ENSGT00940000162118	ENSGT00940000159287	ENSGT00940000156352	ENSGT00940000160354	ENSGT00390000011620.a.a.a ##22	ENSGT00940000156453.a.c.a	ENSGT00910000146942	ENSGT00390000002408.c.a.b	ENSGT00940000156037.a	ENSGT00940000160563	ENSGT00940000155981	ENSGT01030000234624.a.a.b	ENSGT01030000234624.a.a.a	ENSGT01030000234624.a.b	ENSGT01030000234624.b.a.b.a.b	ENSGT01030000234624.b.a.b.b	ENSGT01030000234624.b.a.b.a.a	ENSGT01030000234624.b.a.a	ENSGT00940000153229.A.a.b	ENSGT00940000158138
Macaca_a	ANCESTRAL SPECIES	21	ENSGT00940000157008	ENSGT00390000009127	ENSGT00940000156182	ENSGT00940000153902.a	ENSGT00940000155638	ENSGT00950000182917.b	ENSGT00390000000444	ENSGT00940000155295	ENSGT00390000017571.k	ENSGT00940000162118	ENSGT01090000260213.a.b.a	ENSGT00940000159287	ENSGT00940000156352	ENSGT00940000160354	ENSGT00940000164709.a.b.b.a.b.b.a.a.b.a.a.a.b.b.a.b	ENSGT00390000011620.a.a.a ##22	ENSGT00940000156453.a.c.a	ENSGT00940000156037.a	ENSGT00940000160563	ENSGT00940000155981	ENSGT01030000234624.a.a.b	ENSGT01030000234624.a.a.a	ENSGT01030000234624.a.b	ENSGT01030000234624.b.a.b.a.b	ENSGT01030000234624.b.a.b.b	ENSGT01030000234624.b.a.b.a.a	ENSGT01030000234624.b.a.a	ENSGT00940000153229.A.a.b	ENSGT00940000158138	ENSGT00940000155622.e.b.b	ENSGT00390000000568
Rhesus	MODERN SPECIES	9	ANKRD29 (ENSMMUG00000020328)	NPC1 (ENSMMUG00000021484)	LAMA3 (ENSMMUG00000004321)	TTC39C (ENSMMUG00000004343)	CABYR (ENSMMUG00000004346)	OSBPL1A (ENSMMUG00000004350)	ENSMMUG00000060481	IMPACT (ENSMMUG00000004664)	HRH4 (ENSMMUG00000015065)	ENSMMUG00000063433	ZNF521 (ENSMMUG00000008600)	ENSMMUG00000057585	SS18 (ENSMMUG00000018059)	PSMA8 (ENSMMUG00000018066)	ENSMMUG00000050048	TAF4B (ENSMMUG00000016190) ##22	KCTD1 (ENSMMUG00000004595)	AQP4 (ENSMMUG00000014934)	ENSMMUG00000063880	ENSMMUG00000050507	CHST9 (ENSMMUG00000011801)	ENSMMUG00000039405	CDH2 (ENSMMUG00000015178)	DSC3 (ENSMMUG00000007668)	DSC2 (ENSMMUG00000011687)	DSC1 (ENSMMUG00000011690)	DSG1 (ENSMMUG00000022703)	DSG4 (ENSMMUG00000022704)	DSG3 (ENSMMUG00000021094)	DSG2 (ENSMMUG00000021095)	TTR (ENSMMUG00000052277)
Crab-eating macaque	MODERN SPECIES	9	ANKRD29 (ENSMFAG00000032971)	LAMA3 (ENSMFAG00000045256)	TTC39C (ENSMFAG00000023934)	ENSMFAG00000007440	ENSMFAG00000047510	OSBPL1A (ENSMFAG00000003468)	ENSMFAG00000052772	ENSMFAG00000057815	ENSMFAG00000060888	HRH4 (ENSMFAG00000050624)	ENSMFAG00000048831	ZNF521 (ENSMFAG00000044636)	SS18 (ENSMFAG00000035986)	PSMA8 (ENSMFAG00000011562)	ENSMFAG00000050615	TAF4B (ENSMFAG00000031932) ##22	ENSMFAG00000036987	ENSMFAG00000050383	ENSMFAG00000052328	AQP4 (ENSMFAG00000041146)	ENSMFAG00000056073	CHST9 (ENSMFAG00000037917)	CDH2 (ENSMFAG00000004661)	ENSMFAG00000033666	DSC2 (ENSMFAG00000045076)	DSC1 (ENSMFAG00000035735)	ENSMFAG00000059757	DSG1 (ENSMFAG00000033359)	DSG4 (ENSMFAG00000031939)	DSG3 (ENSMFAG00000031707)	DSG2 (ENSMFAG00000014923)
Pig-tailed macaque	MODERN SPECIES	88	CABLES1 (ENSMNEG00000028707) ##12	TMEM241 (ENSMNEG00000002543)	RIOK3 (ENSMNEG00000041106)	RMC1 (ENSMNEG00000040499)	NPC1 (ENSMNEG00000000903)	ANKRD29 (ENSMNEG00000042612)	LAMA3 (ENSMNEG00000038755)	TTC39C (ENSMNEG00000021471)	ENSMNEG00000034958	OSBPL1A (ENSMNEG00000043616)	ENSMNEG00000045101	HRH4 (ENSMNEG00000038364)	ZNF521 (ENSMNEG00000024580)	SS18 (ENSMNEG00000035248)	PSMA8 (ENSMNEG00000029712)	TAF4B (ENSMNEG00000030401) ##22	KCTD1 (ENSMNEG00000031582)	ENSMNEG00000034649	ENSMNEG00000031060	AQP4 (ENSMNEG00000029824)	CHST9 (ENSMNEG00000028230)	CDH2 (ENSMNEG00000043364)
Cercopithecinae_b	ANCESTRAL SPECIES	25	ENSGT00510000048348	ENSGT00940000157008	ENSGT00390000009127	ENSGT00940000156182	ENSGT00940000153902.a	ENSGT00940000155638	ENSGT01000000215939	ENSGT00950000182917.b	ENSGT00390000000444	ENSGT00940000155295	ENSGT00390000017571.k	ENSGT00940000162118	ENSGT00940000159287	ENSGT00940000156352	ENSGT00940000160354	ENSGT00390000011620.a.a.a ##22	ENSGT00940000156453.a.c.a	ENSGT00910000146942	ENSGT00390000002408.c.a.b	ENSGT00940000156037.a	ENSGT00940000160563	ENSGT00940000154281.m.b.a.b.b	ENSGT00940000155981	ENSGT00940000154875.l	ENSGT01030000234624.a.a.b	ENSGT01030000234624.a.a.a	ENSGT01030000234624.a.b	ENSGT01030000234624.b.a.b.a.b	ENSGT01030000234624.b.a.b.b	ENSGT01030000234624.b.a.b.a.a	ENSGT01030000234624.b.a.a
Olive baboon	MODERN SPECIES	10	CABLES1 (ENSPANG00000009181) ##12	TMEM241 (ENSPANG00000023661)	RIOK3 (ENSPANG00000011485)	RMC1 (ENSPANG00000016020)	NPC1 (ENSPANG00000010539)	ANKRD29 (ENSPANG00000005578)	LAMA3 (ENSPANG00000006011)	TTC39C (ENSPANG00000022865)	ENSPANG00000007685	OSBPL1A (ENSPANG00000006624)	IMPACT (ENSPANG00000008356)	HRH4 (ENSPANG00000012665)	ZNF521 (ENSPANG00000024017)	SS18 (ENSPANG00000008559)	PSMA8 (ENSPANG00000015004)	TAF4B (ENSPANG00000008355) ##22	KCTD1 (ENSPANG00000024016)	CHST9 (ENSPANG00000020899)	ENSPANG00000039105	CDH2 (ENSPANG00000017231)	ENSPANG00000049833	DSC2 (ENSPANG00000009805)	DSC1 (ENSPANG00000009488)	DSG1 (ENSPANG00000016945)	DSG4 (ENSPANG00000005935)	DSG3 (ENSPANG00000010061)	DSG2 (ENSPANG00000016509)	TTR (ENSPANG00000043902)	B4GALT6 (ENSPANG00000009803)	SLC25A52 (ENSPANG00000047262)	TRAPPC8 (ENSPANG00000007683)
Cercopithecinae_d	ANCESTRAL SPECIES	40	ENSGT00510000048348	ENSGT00940000157008	ENSGT00390000009127	ENSGT00940000156182	ENSGT00940000153902.a	ENSGT00940000155638	ENSGT01000000215939	ENSGT00950000182917.b	ENSGT00390000000444	ENSGT00940000155295	ENSGT00390000017571.k	ENSGT00940000162118	ENSGT00940000159287	ENSGT00940000156352	ENSGT00940000160354	ENSGT00390000011620.a.a.a ##22	ENSGT00940000156453.a.c.a	ENSGT00910000146942	ENSGT00390000002408.c.a.b	ENSGT00940000156037.a	ENSGT00940000160563	ENSGT00940000154281.m.b.a.b.b	ENSGT00940000155981	ENSGT00940000154875.l	ENSGT01030000234624.a.a.b	ENSGT01030000234624.a.a.a	ENSGT01030000234624.a.b	ENSGT01030000234624.b.a.b.a.b	ENSGT01030000234624.b.a.b.b	ENSGT01030000234624.b.a.b.a.a	ENSGT01030000234624.b.a.a
Sooty mangabey	MODERN SPECIES	190														ENSCATG00000040236	PSMA8 (ENSCATG00000039661)	TAF4B (ENSCATG00000033025) ##22	ENSCATG00000032708	KCTD1 (ENSCATG00000033898)	ENSCATG00000037357	AQP4 (ENSCATG00000043318)	ENSCATG00000042047	CHST9 (ENSCATG00000038090)	ENSCATG00000041408	CDH2 (ENSCATG00000023265)	ENSCATG00000032024	DSC3 (ENSCATG00000023525)	DSC2 (ENSCATG00000030635)	DSC1 (ENSCATG00000039095)	DSG1 (ENSCATG00000035435)	DSG4 (ENSCATG00000034220)	DSG3 (ENSCATG00000027372)
Drill	MODERN SPECIES	970	TMEM241 (ENSMLEG00000038124)	RIOK3 (ENSMLEG00000028187)	RMC1 (ENSMLEG00000036227)	NPC1 (ENSMLEG00000042669)	ANKRD29 (ENSMLEG00000038382)	LAMA3 (ENSMLEG00000038499)	ENSMLEG00000033765	TTC39C (ENSMLEG00000030204)	ENSMLEG00000040361	OSBPL1A (ENSMLEG00000043765)	IMPACT (ENSMLEG00000033219)	HRH4 (ENSMLEG00000030717)	ZNF521 (ENSMLEG00000042856)	SS18 (ENSMLEG00000043814)	PSMA8 (ENSMLEG00000042180)	TAF4B (ENSMLEG00000030427) ##22	ENSMLEG00000032605	ENSMLEG00000033054	ENSMLEG00000034783	AQP4 (ENSMLEG00000041854)
Vervet Monkey	MODERN SPECIES	9	CABLES1 (ENSCSAG00000017675) ##12	TMEM241 (ENSCSAG00000017679)	RIOK3 (ENSCSAG00000017680)	RMC1 (ENSCSAG00000017683)	NPC1 (ENSCSAG00000017694)	ANKRD29 (ENSCSAG00000017699)	LAMA3 (ENSCSAG00000017763)	TTC39C (ENSCSAG00000017784)	CABYR (ENSCSAG00000017786)	OSBPL1A (ENSCSAG00000017790)	IMPACT (ENSCSAG00000017798)	HRH4 (ENSCSAG00000017801)	ZNF521 (ENSCSAG00000017805)	SS18 (ENSCSAG00000017808)	PSMA8 (ENSCSAG00000017812)	TAF4B (ENSCSAG00000017814) ##22	KCTD1 (ENSCSAG00000017816)	AQP4 (ENSCSAG00000017817)	CHST9 (ENSCSAG00000017818)	CDH2 (ENSCSAG00000017819)	ENSCSAG00000018574	ENSCSAG00000018573	ENSCSAG00000018572	DSC3 (ENSCSAG00000017820)	DSC2 (ENSCSAG00000017822)	DSC1 (ENSCSAG00000017834)	DSG1 (ENSCSAG00000017839)	DSG4 (ENSCSAG00000017847)	DSG3 (ENSCSAG00000017854)	DSG2 (ENSCSAG00000017859)	TTR (ENSCSAG00000017862)
Rhinopithecus	ANCESTRAL SPECIES	537														ENSGT00940000156352	ENSGT00940000160354	ENSGT00390000011620.a.a.a ##22	ENSGT00940000156453.a.c.a	ENSGT00910000146942	ENSGT00390000002408.c.a.b	ENSGT00940000156037.a	ENSGT00940000160563	ENSGT00940000154281.m.b.a.b.b
Black snub-nosed monkey	MODERN SPECIES	2055														SS18 (ENSRBIG00000042147)	PSMA8 (ENSRBIG00000010432)	TAF4B (ENSRBIG00000029558) ##22	ENSRBIG00000027224	ENSRBIG00000038661	ENSRBIG00000030904	AQP4 (ENSRBIG00000028190)	CHST9 (ENSRBIG00000012098)
Golden snub-nosed monkey	MODERN SPECIES	2237														SS18 (ENSRROG00000043063)	PSMA8 (ENSRROG00000014601)	TAF4B (ENSRROG00000030187) ##22	ENSRROG00000030521	ENSRROG00000025474	ENSRROG00000034652	AQP4 (ENSRROG00000040234)	CHST9 (ENSRROG00000035490)	ENSRROG00000014836
Tarsier	MODERN SPECIES	5852													ENSTSYG00000009189	SS18 (ENSTSYG00000011577)	PSMA8 (ENSTSYG00000006548)	TAF4B (ENSTSYG00000009936) ##22	ENSTSYG00000012694
Strepsirrhini	ANCESTRAL SPECIES	22	ENSGT00400000022086.a ##12	ENSGT00510000048348	ENSGT00940000157008	ENSGT00390000009127	ENSGT00940000156182	ENSGT00940000153902.a	ENSGT00940000155638	ENSGT00950000182917.b	ENSGT00390000000444	ENSGT00940000155295	ENSGT00390000017571	ENSGT00940000162118	ENSGT00940000159287	ENSGT00940000156352	ENSGT00940000160354.a	ENSGT00390000011620.a.a.a ##22	ENSGT00940000156453.a	ENSGT00940000156037.a	ENSGT00940000160563	ENSGT00940000155981	ENSGT01030000234624.a.a.b	ENSGT01030000234624.a.a.a	ENSGT01030000234624.a.b	ENSGT01030000234624.b.a.b.a.b	ENSGT01030000234624.b.a.b.b	ENSGT01030000234624.b.a.b.a.a	ENSGT01030000234624.b.a.a	ENSGT00940000153229.A.a.b	ENSGT00940000158138	ENSGT00390000000568	ENSGT00950000182909.b.a.b
Lemuriformes	ANCESTRAL SPECIES	25	ENSGT00400000022086.a ##12	ENSGT00510000048348	ENSGT00940000157008	ENSGT00390000009127	ENSGT00940000156182	ENSGT00940000153902.a	ENSGT00940000155638	ENSGT00950000182917.b	ENSGT00390000000444	ENSGT00940000155295	ENSGT00390000017571	ENSGT00940000162118	ENSGT00940000159287	ENSGT00940000156352	ENSGT00940000160354.a	ENSGT00390000011620.a.a.a ##22	ENSGT00940000156453.a	ENSGT00940000156037.a	ENSGT00940000160563	ENSGT00940000155981	ENSGT01030000234624.a.a.b	ENSGT01030000234624.a.a.a	ENSGT01030000234624.a.b	ENSGT01030000234624.b.a.b.a.b	ENSGT01030000234624.b.a.b.b	ENSGT01030000234624.b.a.b.a.a	ENSGT01030000234624.b.a.a	ENSGT00940000153229.A.a.b	ENSGT00940000158138	ENSGT00390000000568	ENSGT00950000182909.b.a.b
Mouse lemur	MODERN SPECIES	10	ASXL3 (ENSMICG00000031715)	CCDC178 (ENSMICG00000004751)	KLHL14 (ENSMICG00000032905)	GAREM1 (ENSMICG00000013177)	MEP1B (ENSMICG00000044828)	ENSMICG00000043457	ENSMICG00000004459	RNF125 (ENSMICG00000044153)	TRAPPC8 (ENSMICG00000001789)	B4GALT6 (ENSMICG00000007307)	TTR (ENSMICG00000013838)	DSG2 (ENSMICG00000013819)	DSG3 (ENSMICG00000033166)	DSG4 (ENSMICG00000007825)	DSG1 (ENSMICG00000007801)	TAF4B (ENSMICG00000007838) ##22	KCTD1 (ENSMICG00000002325)	ENSMICG00000037615	AQP4 (ENSMICG00000002328)	CHST9 (ENSMICG00000042932)	ENSMICG00000045056	CDH2 (ENSMICG00000000847)	DSC3 (ENSMICG00000004345)	DSC2 (ENSMICG00000004351)	DSC1 (ENSMICG00000007794)	PSMA8 (ENSMICG00000008199)	SS18 (ENSMICG00000013326)	ZNF521 (ENSMICG00000006267)	HRH4 (ENSMICG00000027852)	IMPACT (ENSMICG00000031822)	OSBPL1A (ENSMICG00000014621)
Lemuriformes_a	ANCESTRAL SPECIES	32	ENSGT00400000022086.a ##12	ENSGT00510000048348	ENSGT00940000157008	ENSGT00390000009127	ENSGT00940000156182	ENSGT00940000153902.a	ENSGT00940000155638	ENSGT00950000182917.b	ENSGT00390000000444	ENSGT00940000155295	ENSGT00390000017571	ENSGT00940000162118	ENSGT00940000159287	ENSGT00940000156352	ENSGT00940000160354.a	ENSGT00390000011620.a.a.a ##22	ENSGT00940000156453.a	ENSGT00940000156037.a	ENSGT00940000160563	ENSGT00940000155981	ENSGT01030000234624.a.a.b	ENSGT01030000234624.a.a.a	ENSGT01030000234624.a.b	ENSGT01030000234624.b.a.b.a.b	ENSGT01030000234624.b.a.b.b	ENSGT01030000234624.b.a.b.a.a	ENSGT01030000234624.b.a.a	ENSGT00940000153229.A.a.b	ENSGT00940000158138	ENSGT00390000000568	ENSGT00950000182909.b.a.b
Greater bamboo lemur	MODERN SPECIES	161														SS18 (ENSPSMG00000010855)	PSMA8 (ENSPSMG00000010897)	TAF4B (ENSPSMG00000010953) ##22	KCTD1 (ENSPSMG00000010995)	AQP4 (ENSPSMG00000011054)	CHST9 (ENSPSMG00000011076)
Coquerels sifaka	MODERN SPECIES	236									ENSPCOG00000025488	CABYR (ENSPCOG00000023455)	OSBPL1A (ENSPCOG00000026731)	IMPACT (ENSPCOG00000015567)	ZNF521 (ENSPCOG00000003783)	ENSPCOG00000005637	PSMA8 (ENSPCOG00000016573)	TAF4B (ENSPCOG00000019250) ##22	ENSPCOG00000018213	KCTD1 (ENSPCOG00000028099)	AQP4 (ENSPCOG00000026243)	CHST9 (ENSPCOG00000026106)	CDH2 (ENSPCOG00000014519)	ENSPCOG00000014236	ENSPCOG00000007456
Bushbaby	MODERN SPECIES	127	RIOK3 (ENSOGAG00000014502)	RMC1 (ENSOGAG00000014511)	NPC1 (ENSOGAG00000014516)	ANKRD29 (ENSOGAG00000014521)	LAMA3 (ENSOGAG00000014522)	TTC39C (ENSOGAG00000015961)	ENSOGAG00000015965	OSBPL1A (ENSOGAG00000015970)	IMPACT (ENSOGAG00000009485)	HRH4 (ENSOGAG00000008382)	ZNF521 (ENSOGAG00000007195)	ENSOGAG00000024844	ENSOGAG00000028907	SS18 (ENSOGAG00000003180)	PSMA8 (ENSOGAG00000011233)	TAF4B (ENSOGAG00000014592) ##22	ENSOGAG00000014600	AQP4 (ENSOGAG00000003911)	CHST9 (ENSOGAG00000003913)	ENSOGAG00000033936	CDH2 (ENSOGAG00000002381)	DSC3 (ENSOGAG00000012204)	DSC2 (ENSOGAG00000010189)	DSC1 (ENSOGAG00000010195)	DSG1 (ENSOGAG00000028967)	DSG4 (ENSOGAG00000009937)	DSG3 (ENSOGAG00000008454)	DSG2 (ENSOGAG00000016775)	TTR (ENSOGAG00000016778)	B4GALT6 (ENSOGAG00000016779)	TRAPPC8 (ENSOGAG00000006321)
Euarchontoglires_A	ANCESTRAL SPECIES	22	ENSGT00400000022086.a ##12	ENSGT00510000048348	ENSGT00940000157008	ENSGT00390000009127	ENSGT00940000156182	ENSGT00940000153902.a	ENSGT00940000155638	ENSGT00950000182917.b	ENSGT00390000000444	ENSGT00940000155295	ENSGT00390000017571	ENSGT00940000162118	ENSGT00940000159287	ENSGT00940000156352	ENSGT00940000160354	ENSGT00390000011620.a.a.a ##22	ENSGT00940000156453.a	ENSGT00910000146942	ENSGT00940000156037.a	ENSGT00940000160563	ENSGT00940000155981	ENSGT01030000234624.a.a.b	ENSGT01030000234624.a.a.a	ENSGT01030000234624.a.b	ENSGT01030000234624.b.a.b.a.b	ENSGT01030000234624.b.a.b.b	ENSGT01030000234624.b.a.b.a.a	ENSGT01030000234624.b.a.a	ENSGT00940000153229.A.a.b	ENSGT00940000158138	ENSGT00390000000568
Glires	ANCESTRAL SPECIES	23	ENSGT00400000022086.a ##12	ENSGT00510000048348	ENSGT00940000157008	ENSGT00390000009127	ENSGT00940000156182	ENSGT00940000153902.a	ENSGT00940000155638	ENSGT00950000182917.b	ENSGT00390000000444	ENSGT00940000155295	ENSGT00390000017571	ENSGT00940000162118	ENSGT00940000159287	ENSGT00940000156352	ENSGT00940000160354	ENSGT00390000011620.a.a.a ##22	ENSGT00940000156453.a	ENSGT00910000146942	ENSGT00940000156037.a	ENSGT00940000160563	ENSGT00940000155981	ENSGT01030000234624.a.a.b	ENSGT01030000234624.a.a.a	ENSGT01030000234624.a.b	ENSGT01030000234624.b.a.b.a.b	ENSGT01030000234624.b.a.b.b	ENSGT01030000234624.b.a.b.a.a	ENSGT01030000234624.b.a.a	ENSGT00940000153229.A.a.b	ENSGT00940000158138	ENSGT00390000000568
Rodentia	ANCESTRAL SPECIES	23	ENSGT00400000022086.a ##12	ENSGT00510000048348	ENSGT00940000157008	ENSGT00390000009127	ENSGT00940000156182	ENSGT00940000153902.a	ENSGT00940000155638	ENSGT00950000182917.b	ENSGT00390000000444	ENSGT00940000155295	ENSGT00390000017571	ENSGT00940000162118	ENSGT00940000159287	ENSGT00940000156352	ENSGT00940000160354	ENSGT00390000011620.a.a.a ##22	ENSGT00940000156453.a	ENSGT00940000156037.a	ENSGT00940000160563	ENSGT00940000155981	ENSGT01030000234624.a.a.b	ENSGT01030000234624.a.a.a	ENSGT01030000234624.a.b	ENSGT01030000234624.b.a.b.a.b	ENSGT01030000234624.b.a.b.b	ENSGT01030000234624.b.a.b.a.a	ENSGT01030000234624.b.a.a	ENSGT00940000153229.A.a.b	ENSGT00940000158138	ENSGT00390000000568	ENSGT00950000182909.b.a.b
Rodentia_B	ANCESTRAL SPECIES	27	ENSGT00400000022086.a ##12	ENSGT00510000048348	ENSGT00940000157008	ENSGT00390000009127	ENSGT00940000156182	ENSGT00940000153902.a	ENSGT00940000155638	ENSGT00950000182917.b	ENSGT00390000000444	ENSGT00940000155295	ENSGT00390000017571	ENSGT00940000162118	ENSGT00940000159287	ENSGT00940000156352	ENSGT00940000160354	ENSGT00390000011620.a.a.a ##22	ENSGT00940000156453.a	ENSGT00940000156037.a	ENSGT00940000160563	ENSGT00940000155981	ENSGT01030000234624.a.a.b	ENSGT01030000234624.a.a.a	ENSGT01030000234624.a.b	ENSGT01030000234624.b.a.b.a.b	ENSGT01030000234624.b.a.b.b	ENSGT01030000234624.b.a.b.a.a	ENSGT01030000234624.b.a.a	ENSGT00940000153229.A.a.b	ENSGT00940000158138	ENSGT00390000000568	ENSGT00950000182909.b.a.b
Kangaroo rat	MODERN SPECIES	344	Riok3 (ENSDORG00000011663)	Rmc1 (ENSDORG00000009591)	Npc1 (ENSDORG00000009593)	Ankrd29 (ENSDORG00000009596)	ENSDORG00000025608	ENSDORG00000007343	Ttc39c (ENSDORG00000016739)	ENSDORG00000028513	ENSDORG00000028811	ENSDORG00000028033	Impact (ENSDORG00000008055)	Hrh4 (ENSDORG00000008057)	Zfp521 (ENSDORG00000013718)	Ss18 (ENSDORG00000009314)	Psma8 (ENSDORG00000009316)	Taf4b (ENSDORG00000014517) ##22	Kctd1 (ENSDORG00000006020)	Aqp4 (ENSDORG00000008152)	Chst9 (ENSDORG00000007818)	Cdh2 (ENSDORG00000003504)	Dsc3 (ENSDORG00000009594)	Dsc2 (ENSDORG00000009592)	Dsc1 (ENSDORG00000009590)	ENSDORG00000012113	Dsg4 (ENSDORG00000012128)	Dsg3 (ENSDORG00000016511)	ENSDORG00000026582	Ttr (ENSDORG00000012678)	B4galt6 (ENSDORG00000029583)	Trappc8 (ENSDORG00000002918)	Rnf125 (ENSDORG00000024503)
Myomorpha	ANCESTRAL SPECIES	45	ENSGT00400000022086.a ##12	ENSGT00510000048348	ENSGT00940000157008	ENSGT00390000009127	ENSGT00940000156182	ENSGT00940000153902.a	ENSGT00940000155638	ENSGT00950000182917.b	ENSGT00390000000444	ENSGT00940000155295	ENSGT00390000017571	ENSGT00940000162118	ENSGT00940000159287	ENSGT00940000156352	ENSGT00940000160354	ENSGT00390000011620.a.a.a ##22	ENSGT00940000156453.a	ENSGT00940000156037.a	ENSGT00940000160563	ENSGT00940000155981	ENSGT01030000234624.a.a.b	ENSGT01030000234624.a.a.a	ENSGT01030000234624.a.b	ENSGT01030000234624.b.a.b.a.b	ENSGT01030000234624.b.a.b.b	ENSGT01030000234624.b.a.b.a.a	ENSGT01030000234624.b.a.a	ENSGT00940000153229.A.a.b	ENSGT00940000158138	ENSGT00390000000568	ENSGT00950000182909.b.a.b
Muroidea	ANCESTRAL SPECIES	46	ENSGT00400000022086.a ##12	ENSGT00510000048348	ENSGT00940000157008	ENSGT00390000009127	ENSGT00940000156182	ENSGT00940000153902.a	ENSGT00940000155638	ENSGT00950000182917.b	ENSGT00390000000444	ENSGT00940000155295	ENSGT00390000017571	ENSGT00940000162118	ENSGT00940000159287	ENSGT00940000156352	ENSGT00940000160354	ENSGT00390000011620.a.a.a ##22	ENSGT00940000156453.a	ENSGT00940000156037.a	ENSGT00940000160563	ENSGT00940000155981	ENSGT01030000234624.a.a.b	ENSGT01030000234624.a.a.a	ENSGT01030000234624.a.b	ENSGT01030000234624.b.a.b.a.b	ENSGT01030000234624.b.a.b.b	ENSGT01030000234624.b.a.b.a.a	ENSGT01030000234624.b.a.a	ENSGT00940000153229.A.a.b	ENSGT00940000158138	ENSGT00390000000568	ENSGT00950000182909.b.a.b
Muroidea_A	ANCESTRAL SPECIES	18	ENSGT00400000022086.a ##12	ENSGT00510000048348	ENSGT00940000157008	ENSGT00390000009127	ENSGT00940000156182	ENSGT00940000153902.a	ENSGT00940000155638	ENSGT00950000182917.b	ENSGT00390000000444	ENSGT00940000155295	ENSGT00390000017571	ENSGT00940000162118	ENSGT00940000159287	ENSGT00940000156352	ENSGT00940000160354	ENSGT00390000011620.a.a.a ##22	ENSGT00940000156453.a	ENSGT00940000156037.a	ENSGT00940000160563	ENSGT00940000155981	ENSGT01030000234624.a.a.b	ENSGT01030000234624.a.a.a	ENSGT01030000234624.a.b	ENSGT01030000234624.b.a.b.a.b	ENSGT01030000234624.b.a.b.b	ENSGT01030000234624.b.a.b.a.a	ENSGT01030000234624.b.a.a	ENSGT00940000153229.A.a.b	ENSGT00940000158138	ENSGT00390000000568	ENSGT00950000182909.b.a.b
Cricetidae	ANCESTRAL SPECIES	18	ENSGT00400000022086.a ##12	ENSGT00510000048348	ENSGT00940000157008	ENSGT00390000009127	ENSGT00940000156182	ENSGT00940000153902.a	ENSGT00940000155638	ENSGT00950000182917.b	ENSGT00390000000444	ENSGT00940000155295	ENSGT00390000017571	ENSGT00940000162118	ENSGT00940000159287	ENSGT00940000156352	ENSGT00940000160354	ENSGT00390000011620.a.a.a ##22	ENSGT00940000156453.a	ENSGT00940000156037.a	ENSGT00940000160563	ENSGT00940000155981	ENSGT01030000234624.a.a.b	ENSGT01030000234624.a.a.a	ENSGT01030000234624.a.b	ENSGT01030000234624.b.a.b.a.b	ENSGT01030000234624.b.a.b.b	ENSGT01030000234624.b.a.b.a.a	ENSGT01030000234624.b.a.a	ENSGT00940000153229.A.a.b	ENSGT00940000158138	ENSGT00390000000568	ENSGT00950000182909.b.a.b
Cricetinae	ANCESTRAL SPECIES	14	ENSGT00400000022086.a ##12	ENSGT00510000048348	ENSGT00940000157008	ENSGT00390000009127	ENSGT00940000156182	ENSGT00940000153902.a	ENSGT00940000155638	ENSGT00950000182917.b	ENSGT00390000000444	ENSGT00940000155295	ENSGT00390000017571	ENSGT00940000162118	ENSGT00940000159287	ENSGT00940000156352	ENSGT00940000160354	ENSGT00390000011620.a.a.a ##22	ENSGT00940000156453.a	ENSGT00940000156037.a	ENSGT00940000160563	ENSGT00940000155981	ENSGT01030000234624.a.a.b	ENSGT01030000234624.a.a.a	ENSGT01030000234624.a.b	ENSGT01030000234624.b.a.b.a.b	ENSGT01030000234624.b.a.b.b	ENSGT01030000234624.b.a.b.a.a	ENSGT01030000234624.b.a.a	ENSGT00940000153229.A.a.b	ENSGT00940000158138	ENSGT00390000000568	ENSGT00950000182909.b.a.b
Chinese hamster chok1gshd	MODERN SPECIES	92	Tmem241 (ENSCGRG00001015184)	Riok3 (ENSCGRG00001013249)	Rmc1 (ENSCGRG00001014209)	Npc1 (ENSCGRG00001018684)	Ankrd29 (ENSCGRG00001014314)	Lama3 (ENSCGRG00001008813)	Ttc39c (ENSCGRG00001022129)	Cabyr (ENSCGRG00001010088)	Osbpl1a (ENSCGRG00001000881)	ENSCGRG00001008388	Impact (ENSCGRG00001014462)	Hrh4 (ENSCGRG00001020367)	Zfp521 (ENSCGRG00001024510)	Ss18 (ENSCGRG00001023153)	Psma8 (ENSCGRG00001022616)	Taf4b (ENSCGRG00001003694) ##22	ENSCGRG00001021440	Kctd1 (ENSCGRG00001007208)	Aqp4 (ENSCGRG00001023202)	Chst9 (ENSCGRG00001013825)	Cdh2 (ENSCGRG00001015862)	ENSCGRG00001019027	ENSCGRG00001020686	ENSCGRG00001000131	Dsc3 (ENSCGRG00001018804)	Dsc2 (ENSCGRG00001024514)	Dsc1 (ENSCGRG00001018340)	ENSCGRG00001018683	Dsg4 (ENSCGRG00001015415)	Dsg3 (ENSCGRG00001017357)	Ttr (ENSCGRG00001021304)
Golden Hamster	MODERN SPECIES	619	Cables1 (ENSMAUG00000021209) ##12	ENSMAUG00000014369	Riok3 (ENSMAUG00000020527)	Rmc1 (ENSMAUG00000002841)	Npc1 (ENSMAUG00000011294)	Ankrd29 (ENSMAUG00000001273)	Lama3 (ENSMAUG00000014571)	Ttc39c (ENSMAUG00000001012)	Cabyr (ENSMAUG00000009212)	Osbpl1a (ENSMAUG00000012839)	Impact (ENSMAUG00000018528)	Hrh4 (ENSMAUG00000002034)	Zfp521 (ENSMAUG00000018583)	Ss18 (ENSMAUG00000019395)	Psma8 (ENSMAUG00000017223)	Taf4b (ENSMAUG00000000960) ##22	Kctd1 (ENSMAUG00000012159)	Aqp4 (ENSMAUG00000017449)	Chst9 (ENSMAUG00000012710)	Cdh2 (ENSMAUG00000014636)	Dsc3 (ENSMAUG00000013762)	Dsc2 (ENSMAUG00000010434)	Dsc1 (ENSMAUG00000000925)	ENSMAUG00000021176	Dsg4 (ENSMAUG00000010495)	Dsg3 (ENSMAUG00000011710)	Dsg2 (ENSMAUG00000018653)	Ttr (ENSMAUG00000011770)	B4galt6 (ENSMAUG00000016396)	Trappc8 (ENSMAUG00000016177)	ENSMAUG00000009622
Cricetidae_B	ANCESTRAL SPECIES	15	ENSGT00400000022086.a ##12	ENSGT00510000048348	ENSGT00940000157008	ENSGT00390000009127	ENSGT00940000156182	ENSGT00940000153902.a	ENSGT00940000155638	ENSGT00950000182917.b	ENSGT00390000000444	ENSGT00940000155295	ENSGT00390000017571	ENSGT00940000162118	ENSGT00940000159287	ENSGT00940000156352	ENSGT00940000160354	ENSGT00390000011620.a.a.a ##22	ENSGT00940000156453.a	ENSGT00940000156037.a	ENSGT00940000160563	ENSGT00940000155981	ENSGT00950000182895.a.a.a.b.f	ENSGT01030000234624.a.a.b	ENSGT01030000234624.a.a.a	ENSGT01030000234624.a.b	ENSGT01030000234624.b.a.b.a.b	ENSGT01030000234624.b.a.b.b	ENSGT01030000234624.b.a.b.a.a	ENSGT01030000234624.b.a.a	ENSGT00940000153229.A.a.b	ENSGT00940000158138	ENSGT00390000000568
Northern American deer mouse	MODERN SPECIES	10	Tmem241 (ENSPEMG00000017338)	Riok3 (ENSPEMG00000023794)	Rmc1 (ENSPEMG00000022078)	Npc1 (ENSPEMG00000023382)	Ankrd29 (ENSPEMG00000003235)	ENSPEMG00000030013	ENSPEMG00000016767	Ttc39c (ENSPEMG00000007592)	ENSPEMG00000025747	Osbpl1a (ENSPEMG00000014841)	Impact (ENSPEMG00000029969)	Hrh4 (ENSPEMG00000014230)	Zfp521 (ENSPEMG00000001995)	Ss18 (ENSPEMG00000014583)	Psma8 (ENSPEMG00000008949)	Taf4b (ENSPEMG00000019174) ##22	ENSPEMG00000018321	Aqp4 (ENSPEMG00000029003)	Chst9 (ENSPEMG00000006948)	Cdh2 (ENSPEMG00000018458)	ENSPEMG00000030174	Dsc3 (ENSPEMG00000023539)	ENSPEMG00000026147	Dsc1 (ENSPEMG00000023922)	ENSPEMG00000009841	Dsg4 (ENSPEMG00000016266)	ENSPEMG00000023683	Dsg2 (ENSPEMG00000011444)	Ttr (ENSPEMG00000024235)	B4galt6 (ENSPEMG00000011754)	Trappc8 (ENSPEMG00000010916)
Prairie vole	MODERN SPECIES	5	Npc1 (ENSMOCG00000014032)	Ankrd29 (ENSMOCG00000015884)	Lama3 (ENSMOCG00000020402)	Ttc39c (ENSMOCG00000019093)	Cabyr (ENSMOCG00000017399)	ENSMOCG00000019839	ENSMOCG00000022203	Impact (ENSMOCG00000009264)	Hrh4 (ENSMOCG00000016549)	ENSMOCG00000009042	Zfp521 (ENSMOCG00000021972)	ENSMOCG00000000611	ENSMOCG00000000904	Ss18 (ENSMOCG00000008443)	Psma8 (ENSMOCG00000016308)	Taf4b (ENSMOCG00000000743) ##22	Kctd1 (ENSMOCG00000003075)	ENSMOCG00000012425	Aqp4 (ENSMOCG00000017811)	Chst9 (ENSMOCG00000016675)	Dsc3 (ENSMOCG00000012014)	Dsc2 (ENSMOCG00000014974)	Dsc1 (ENSMOCG00000005177)	ENSMOCG00000020919	Dsg4 (ENSMOCG00000016289)	Dsg3 (ENSMOCG00000018195)	Dsg2 (ENSMOCG00000015887)	Ttr (ENSMOCG00000002400)	B4galt6 (ENSMOCG00000012621)	Trappc8 (ENSMOCG00000020417)	Rnf125 (ENSMOCG00000022723)
Murinae	ANCESTRAL SPECIES	17	ENSGT00400000022086.a ##12	ENSGT00510000048348	ENSGT00940000157008	ENSGT00390000009127	ENSGT00940000156182	ENSGT00940000153902.a	ENSGT00940000155638	ENSGT00950000182917.b	ENSGT00390000000444	ENSGT00940000155295	ENSGT00390000017571	ENSGT00940000162118	ENSGT00940000159287	ENSGT00940000156352	ENSGT00940000160354	ENSGT00390000011620.a.a.a ##22	ENSGT00940000156453.a	ENSGT00940000156037.a	ENSGT00940000160563	ENSGT00940000155981	ENSGT01030000234624.a.a.b	ENSGT01030000234624.a.a.a	ENSGT01030000234624.a.b	ENSGT01030000234624.b.a.b.a.b	ENSGT01030000234624.b.a.b.b	ENSGT01030000234624.b.a.b.a.a	ENSGT01030000234624.b.a.a	ENSGT00940000153229.A.a.b	ENSGT00940000158138	ENSGT00390000000568	ENSGT00950000182909.b.a.b
Mus	ANCESTRAL SPECIES	19	ENSGT00400000022086.a ##12	ENSGT00510000048348	ENSGT00940000157008	ENSGT00390000009127	ENSGT00940000156182	ENSGT00940000153902.a	ENSGT00940000155638	ENSGT00950000182917.b	ENSGT00390000000444	ENSGT00940000155295	ENSGT00390000017571	ENSGT00940000162118	ENSGT00940000159287	ENSGT00940000156352	ENSGT00940000160354	ENSGT00390000011620.a.a.a ##22	ENSGT00940000156453.a	ENSGT00940000156037.a	ENSGT00940000160563	ENSGT00940000155981	ENSGT01030000234624.a.a.b	ENSGT01030000234624.a.a.a	ENSGT01030000234624.a.b	ENSGT01030000234624.b.a.b.a.b	ENSGT01030000234624.b.a.b.b	ENSGT01030000234624.b.a.b.a.a	ENSGT01030000234624.b.a.a	ENSGT00940000153229.A.a.b	ENSGT00940000158138	ENSGT00390000000568	ENSGT00950000182909.b.a.b
Mus_A	ANCESTRAL SPECIES	19	ENSGT00510000048348	ENSGT00940000157008	ENSGT00390000009127	ENSGT00940000156182	ENSGT00940000153902.a	ENSGT00940000155638	ENSGT00950000182917.b	ENSGT00390000000444	ENSGT00940000155295	ENSGT00390000017571	ENSGT00940000162118	ENSGT00940000159287	ENSGT00950000183087.A.a.a.b	ENSGT00940000156352	ENSGT00940000160354	ENSGT00390000011620.a.a.a ##22	ENSGT00940000156453.a	ENSGT00940000156037.a	ENSGT00940000160563	ENSGT00940000155981	ENSGT01030000234624.a.a.b	ENSGT01030000234624.a.a.a	ENSGT01030000234624.a.b	ENSGT01030000234624.b.a.b.a.b.d	ENSGT01030000234624.b.a.b.b	ENSGT01030000234624.b.a.b.a.a	ENSGT01030000234624.b.a.a	ENSGT00940000153229.A.a.b	ENSGT00940000158138	ENSGT00390000000568	ENSGT00950000182909.b.a.b
Mus_B	ANCESTRAL SPECIES	19	ENSGT00510000048348	ENSGT00940000157008	ENSGT00390000009127	ENSGT00940000156182	ENSGT00940000153902.a	ENSGT00940000155638	ENSGT00950000182917.b	ENSGT00390000000444	ENSGT00940000155295	ENSGT00390000017571	ENSGT00940000162118	ENSGT00940000159287	ENSGT00950000183087.A.a.a.b	ENSGT00940000156352	ENSGT00940000160354	ENSGT00390000011620.a.a.a ##22	ENSGT00940000156453.a	ENSGT00940000156037.a	ENSGT00940000160563	ENSGT00940000155981	ENSGT01030000234624.a.a.b	ENSGT01030000234624.a.a.a	ENSGT01030000234624.a.b	ENSGT01030000234624.b.a.b.a.b.d	ENSGT01030000234624.b.a.b.a.b.c	ENSGT01030000234624.b.a.b.b	ENSGT01030000234624.b.a.b.a.a	ENSGT01030000234624.b.a.a	ENSGT00940000153229.A.a.b	ENSGT00940000158138	ENSGT00390000000568
Mus_C	ANCESTRAL SPECIES	16	ENSGT00510000048348	ENSGT00940000157008	ENSGT00390000009127	ENSGT00940000156182	ENSGT00940000153902.a	ENSGT00940000155638	ENSGT00950000182917.b	ENSGT00390000000444	ENSGT00940000155295	ENSGT00390000017571	ENSGT00940000162118	ENSGT00940000159287	ENSGT00950000183087.A.a.a.b	ENSGT00940000156352	ENSGT00940000160354	ENSGT00390000011620.a.a.a ##22	ENSGT00940000156453.a	ENSGT00940000156037.a	ENSGT00940000160563	ENSGT00940000155981	ENSGT01030000234624.a.a.b	ENSGT01030000234624.a.a.a	ENSGT01030000234624.a.b	ENSGT01030000234624.b.a.b.a.b.d	ENSGT01030000234624.b.a.b.b	ENSGT01030000234624.b.a.b.a.a	ENSGT01030000234624.b.a.a	ENSGT00940000153229.A.a.b	ENSGT00940000158138	ENSGT00390000000568	ENSGT00950000182909.b.a.b
spretus	MODERN SPECIES	9	Tmem241 (MGP_SPRETEiJ_G0022915)	Riok3 (MGP_SPRETEiJ_G0022916)	Rmc1 (MGP_SPRETEiJ_G0022917)	Npc1 (MGP_SPRETEiJ_G0022918)	Ankrd29 (MGP_SPRETEiJ_G0022919)	Lama3 (MGP_SPRETEiJ_G0022920)	Ttc39c (MGP_SPRETEiJ_G0022921)	Cabyr (MGP_SPRETEiJ_G0022922)	Osbpl1a (MGP_SPRETEiJ_G0022923)	Impact (MGP_SPRETEiJ_G0022924)	Hrh4 (MGP_SPRETEiJ_G0022925)	Zfp521 (MGP_SPRETEiJ_G0022926)	MGP_SPRETEiJ_G0022927	Ss18 (MGP_SPRETEiJ_G0022928)	Psma8 (MGP_SPRETEiJ_G0022929)	Taf4b (MGP_SPRETEiJ_G0022930) ##22	Kctd1 (MGP_SPRETEiJ_G0022931)	Aqp4 (MGP_SPRETEiJ_G0022932)	Chst9 (MGP_SPRETEiJ_G0022933)	Cdh2 (MGP_SPRETEiJ_G0022934)	Dsc3 (MGP_SPRETEiJ_G0022935)	Dsc2 (MGP_SPRETEiJ_G0022936)	Dsc1 (MGP_SPRETEiJ_G0022937)	Dsg4 (MGP_SPRETEiJ_G0022938)	MGP_SPRETEiJ_G0022939	Dsg2 (MGP_SPRETEiJ_G0022940)	Ttr (MGP_SPRETEiJ_G0022941)	B4galt6 (MGP_SPRETEiJ_G0022942)	Trappc8 (MGP_SPRETEiJ_G0022943)	Rnf125 (MGP_SPRETEiJ_G0022944)	Rnf138 (MGP_SPRETEiJ_G0022945)
Steppe mouse	MODERN SPECIES	3229					ENSMSIG00000007290	Ttc39c (ENSMSIG00000007224)	Cabyr (ENSMSIG00000007159)	Osbpl1a (ENSMSIG00000006873)	Impact (ENSMSIG00000006812)	ENSMSIG00000006798	Hrh4 (ENSMSIG00000006789)	Zfp521 (ENSMSIG00000006761)	ENSMSIG00000006731	Ss18 (ENSMSIG00000006510)	Psma8 (ENSMSIG00000006470)	Taf4b (ENSMSIG00000006310) ##22	Kctd1 (ENSMSIG00000006254)
Mouse	MODERN SPECIES	9	Cables1 (ENSMUSG00000040957) ##12	Tmem241 (ENSMUSG00000049411)	Riok3 (ENSMUSG00000024404)	Rmc1 (ENSMUSG00000024410)	Npc1 (ENSMUSG00000024413)	Ankrd29 (ENSMUSG00000057766)	Lama3 (ENSMUSG00000024421)	Ttc39c (ENSMUSG00000024424)	Cabyr (ENSMUSG00000024430)	Osbpl1a (ENSMUSG00000044252)	Impact (ENSMUSG00000024423)	Hrh4 (ENSMUSG00000037346)	Zfp521 (ENSMUSG00000024420)	Ss18 (ENSMUSG00000037013)	Psma8 (ENSMUSG00000036743)	Taf4b (ENSMUSG00000054321) ##22	Kctd1 (ENSMUSG00000036225)	Aqp4 (ENSMUSG00000024411)	Chst9 (ENSMUSG00000047161)	Cdh2 (ENSMUSG00000024304)	Dsc3 (ENSMUSG00000059898)	Dsc2 (ENSMUSG00000024331)	Dsc1 (ENSMUSG00000044322)	Dsg1c (ENSMUSG00000034774)	Dsg1a (ENSMUSG00000069441)	Dsg1b (ENSMUSG00000061928)	Dsg4 (ENSMUSG00000001804)	Dsg3 (ENSMUSG00000056632)	Dsg2 (ENSMUSG00000044393)	Ttr (ENSMUSG00000061808)	B4galt6 (ENSMUSG00000056124)
Ryukyu mouse	MODERN SPECIES	9	Riok3 (MGP_CAROLIEiJ_G0022001)	Rmc1 (MGP_CAROLIEiJ_G0022002)	Npc1 (MGP_CAROLIEiJ_G0022003)	Ankrd29 (MGP_CAROLIEiJ_G0022004)	Lama3 (MGP_CAROLIEiJ_G0022005)	MGP_CAROLIEiJ_G0022006	Ttc39c (MGP_CAROLIEiJ_G0022007)	Cabyr (MGP_CAROLIEiJ_G0022008)	Osbpl1a (MGP_CAROLIEiJ_G0022009)	Impact (MGP_CAROLIEiJ_G0022010)	Hrh4 (MGP_CAROLIEiJ_G0022011)	Zfp521 (MGP_CAROLIEiJ_G0022012)	MGP_CAROLIEiJ_G0022013	Ss18 (MGP_CAROLIEiJ_G0022014)	Psma8 (MGP_CAROLIEiJ_G0022015)	Taf4b (MGP_CAROLIEiJ_G0022016) ##22	Kctd1 (MGP_CAROLIEiJ_G0022017)	Aqp4 (MGP_CAROLIEiJ_G0022018)	Chst9 (MGP_CAROLIEiJ_G0022019)	Cdh2 (MGP_CAROLIEiJ_G0022020)	Dsc3 (MGP_CAROLIEiJ_G0022021)	Dsc2 (MGP_CAROLIEiJ_G0022022)	Dsc1 (MGP_CAROLIEiJ_G0022023)	MGP_CAROLIEiJ_G0022024	MGP_CAROLIEiJ_G0022025	MGP_CAROLIEiJ_G0022026	Dsg4 (MGP_CAROLIEiJ_G0022027)	MGP_CAROLIEiJ_G0022028	Dsg2 (MGP_CAROLIEiJ_G0022029)	Ttr (MGP_CAROLIEiJ_G0022030)	B4galt6 (MGP_CAROLIEiJ_G0022031)
Shrew mouse	MODERN SPECIES	6	Cables1 (MGP_PahariEiJ_G0018737) ##12	Tmem241 (MGP_PahariEiJ_G0018738)	Riok3 (MGP_PahariEiJ_G0018739)	Rmc1 (MGP_PahariEiJ_G0018740)	Npc1 (MGP_PahariEiJ_G0018741)	Ankrd29 (MGP_PahariEiJ_G0018742)	Lama3 (MGP_PahariEiJ_G0018743)	Ttc39c (MGP_PahariEiJ_G0018744)	Cabyr (MGP_PahariEiJ_G0018745)	Osbpl1a (MGP_PahariEiJ_G0018746)	Impact (MGP_PahariEiJ_G0018747)	Hrh4 (MGP_PahariEiJ_G0018748)	Zfp521 (MGP_PahariEiJ_G0018749)	Ss18 (MGP_PahariEiJ_G0018750)	Psma8 (MGP_PahariEiJ_G0018751)	Taf4b (MGP_PahariEiJ_G0018752) ##22	Kctd1 (MGP_PahariEiJ_G0018753)	Aqp4 (MGP_PahariEiJ_G0018754)	Chst9 (MGP_PahariEiJ_G0018755)	MGP_PahariEiJ_G0018756	Cdh2 (MGP_PahariEiJ_G0018757)	Dsc3 (MGP_PahariEiJ_G0018758)	Dsc2 (MGP_PahariEiJ_G0018759)	Dsc1 (MGP_PahariEiJ_G0018760)	Dsg4 (MGP_PahariEiJ_G0018761)	Dsg3 (MGP_PahariEiJ_G0018762)	Dsg2 (MGP_PahariEiJ_G0018763)	Ttr (MGP_PahariEiJ_G0018764)	B4galt6 (MGP_PahariEiJ_G0018765)	Trappc8 (MGP_PahariEiJ_G0018766)	Rnf125 (MGP_PahariEiJ_G0018767)
Rat	MODERN SPECIES	9	Tmem241 (ENSRNOG00000023412)	Riok3 (ENSRNOG00000023376)	Rmc1 (ENSRNOG00000012597)	Npc1 (ENSRNOG00000012016)	Ankrd29 (ENSRNOG00000046744)	Lama3 (ENSRNOG00000011300)	Ttc39c (ENSRNOG00000050949)	Cabyr (ENSRNOG00000047436)	Osbpl1a (ENSRNOG00000054058)	Impact (ENSRNOG00000045844)	Hrh4 (ENSRNOG00000016887)	LOC108349606 (ENSRNOG00000031244)	Zfp521 (ENSRNOG00000016874)	Ss18 (ENSRNOG00000016800)	Psma8 (ENSRNOG00000030363)	Taf4b (ENSRNOG00000026023) ##22	Kctd1 (ENSRNOG00000016467)	Rpl39 (ENSRNOG00000034237)	Aqp4 (ENSRNOG00000016043)	Chst9 (ENSRNOG00000015867)	AC118833.1 (ENSRNOG00000038412)	Cdh2 (ENSRNOG00000015602)	Dsc3 (ENSRNOG00000017159)	Dsc2 (ENSRNOG00000039969)	Dsc1 (ENSRNOG00000056258)	ENSRNOG00000069260	ENSRNOG00000062351	Dsg1 (ENSRNOG00000016853)	Dsg3 (ENSRNOG00000016632)	Dsg2 (ENSRNOG00000016526)	Ttr (ENSRNOG00000016275)
Upper Galilee mountains blind mole rat	MODERN SPECIES	1398	Tmem241 (ENSNGAG00000005814)	Riok3 (ENSNGAG00000011446)	Rmc1 (ENSNGAG00000017431)	Npc1 (ENSNGAG00000013904)	Ankrd29 (ENSNGAG00000015734)	Lama3 (ENSNGAG00000016262)	Ttc39c (ENSNGAG00000000053)	ENSNGAG00000000982	ENSNGAG00000016344	ENSNGAG00000018573	Impact (ENSNGAG00000000315)	ENSNGAG00000001463	Zfp521 (ENSNGAG00000011355)	Ss18 (ENSNGAG00000013134)	Psma8 (ENSNGAG00000015507)	Taf4b (ENSNGAG00000016659) ##22	ENSNGAG00000011519	Kctd1 (ENSNGAG00000019580)	Aqp4 (ENSNGAG00000020272)	Chst9 (ENSNGAG00000002874)
Lesser Egyptian jerboa	MODERN SPECIES	55	Rmc1 (ENSJJAG00000018244)	Npc1 (ENSJJAG00000012547)	Ankrd29 (ENSJJAG00000016034)	ENSJJAG00000018224	ENSJJAG00000006606	Ttc39c (ENSJJAG00000019984)	ENSJJAG00000016642	ENSJJAG00000016064	ENSJJAG00000015785	Impact (ENSJJAG00000024285)	Hrh4 (ENSJJAG00000016339)	Zfp521 (ENSJJAG00000021105)	Ss18 (ENSJJAG00000018177)	Psma8 (ENSJJAG00000022332)	ENSJJAG00000020342	Taf4b (ENSJJAG00000022407) ##22	Kctd1 (ENSJJAG00000014053)	Aqp4 (ENSJJAG00000010534)	Chst9 (ENSJJAG00000018791)	ENSJJAG00000017817	Dsc3 (ENSJJAG00000021751)	Dsc2 (ENSJJAG00000018645)	Dsc1 (ENSJJAG00000019058)	ENSJJAG00000024247	Dsg4 (ENSJJAG00000020875)	Dsg3 (ENSJJAG00000000893)	ENSJJAG00000023133	Ttr (ENSJJAG00000013612)	B4galt6 (ENSJJAG00000001465)	ENSJJAG00000022562	Plpp2 (ENSJJAG00000022738)
Rodentia_A	ANCESTRAL SPECIES	23	ENSGT00400000022086.a ##12	ENSGT00510000048348	ENSGT00940000157008	ENSGT00390000009127	ENSGT00940000156182	ENSGT00940000153902.a	ENSGT00940000155638	ENSGT00950000182917.b	ENSGT00390000000444	ENSGT00940000155295	ENSGT00390000017571	ENSGT00940000162118	ENSGT00940000159287	ENSGT00940000156352	ENSGT00940000160354	ENSGT00390000011620.a.a.a ##22	ENSGT00940000156453.a	ENSGT00940000156037.a	ENSGT00940000160563	ENSGT00940000155981	ENSGT01030000234624.a.a.b	ENSGT01030000234624.a.a.a	ENSGT01030000234624.a.b	ENSGT01030000234624.b.a.b.a.b	ENSGT01030000234624.b.a.b.b	ENSGT01030000234624.b.a.b.a.a	ENSGT01030000234624.b.a.a	ENSGT00940000153229.A.a.b	ENSGT00940000158138	ENSGT00390000000568	ENSGT00950000182909.b.a.b
Hystricomorpha	ANCESTRAL SPECIES	32	ENSGT00400000022086.a ##12	ENSGT00510000048348	ENSGT00940000157008	ENSGT00390000009127	ENSGT00940000156182	ENSGT00940000153902.a	ENSGT00940000155638	ENSGT00950000182917.b	ENSGT00390000000444	ENSGT00940000155295	ENSGT00390000017571	ENSGT00940000162118	ENSGT00940000159287	ENSGT00940000156352	ENSGT00940000160354	ENSGT00390000011620.a.a.a ##22	ENSGT00940000156453.a	ENSGT00940000156037.a	ENSGT00940000160563	ENSGT00940000155981	ENSGT01030000234624.a.a.b	ENSGT01030000234624.a.a.a	ENSGT01030000234624.a.b	ENSGT01030000234624.b.a.b.a.b	ENSGT01030000234624.b.a.b.b	ENSGT01030000234624.b.a.b.a.a	ENSGT01030000234624.b.a.a	ENSGT00940000153229.A.a.b	ENSGT00940000158138	ENSGT00390000000568	ENSGT00950000182909.b.a.b
Naked mole-rat female	MODERN SPECIES	9	RMC1 (ENSHGLG00000009136)	NPC1 (ENSHGLG00000004320)	ANKRD29 (ENSHGLG00000003687)	ENSHGLG00000047717	LAMA3 (ENSHGLG00000007164)	TTC39C (ENSHGLG00000004150)	ENSHGLG00000033917	ENSHGLG00000007031	OSBPL1A (ENSHGLG00000005475)	IMPACT (ENSHGLG00000032618)	ENSHGLG00000043231	ZNF521 (ENSHGLG00000003785)	SS18 (ENSHGLG00000007496)	ENSHGLG00000020165	PSMA8 (ENSHGLG00000009316)	TAF4B (ENSHGLG00000007544) ##22	KCTD1 (ENSHGLG00000018260)	AQP4 (ENSHGLG00000039169)	CHST9 (ENSHGLG00000042304)	ENSHGLG00000007487	ENSHGLG00000040245	ENSHGLG00000004019	ENSHGLG00000049706	ENSHGLG00000042691	ENSHGLG00000018510	DSC2 (ENSHGLG00000018208)	DSC1 (ENSHGLG00000007182)	DSG1 (ENSHGLG00000003726)	DSG4 (ENSHGLG00000007440)	DSG3 (ENSHGLG00000033832)	DSG2 (ENSHGLG00000018540)
Hystricomorpha_a	ANCESTRAL SPECIES	26	ENSGT00400000022086.a ##12	ENSGT00510000048348	ENSGT00940000157008	ENSGT00390000009127	ENSGT00940000156182	ENSGT00940000153902.a	ENSGT00940000155638	ENSGT00950000182917.b	ENSGT00390000000444	ENSGT00940000155295	ENSGT00390000017571	ENSGT00940000162118	ENSGT00940000159287	ENSGT00940000156352	ENSGT00940000160354	ENSGT00390000011620.a.a.a ##22	ENSGT00940000156453.a	ENSGT00940000156037.a	ENSGT00940000160563	ENSGT00940000155981	ENSGT01030000234624.a.a.b	ENSGT01030000234624.a.a.a	ENSGT01030000234624.a.b	ENSGT01030000234624.b.a.b.a.b	ENSGT01030000234624.b.a.b.b	ENSGT01030000234624.b.a.b.a.a	ENSGT01030000234624.b.a.a	ENSGT00940000153229.A.a.b	ENSGT00940000158138	ENSGT00390000000568	ENSGT00950000182909.b.a.b
Hystricomorpha_b	ANCESTRAL SPECIES	21	ENSGT00400000022086.a ##12	ENSGT00510000048348	ENSGT00940000157008	ENSGT00390000009127	ENSGT00940000156182	ENSGT00940000153902.a	ENSGT00940000155638	ENSGT00950000182917.b	ENSGT00390000000444	ENSGT00940000155295	ENSGT00390000017571	ENSGT00940000162118	ENSGT00940000159287	ENSGT00940000156352	ENSGT00940000160354	ENSGT00390000011620.a.a.a ##22	ENSGT00940000156453.a	ENSGT00940000156037.a	ENSGT00940000160563	ENSGT00940000155981	ENSGT01030000234624.a.a.b	ENSGT01030000234624.a.a.a	ENSGT01030000234624.a.b	ENSGT01030000234624.b.a.b.a.b	ENSGT01030000234624.b.a.b.b	ENSGT01030000234624.b.a.b.a.a	ENSGT01030000234624.b.a.a	ENSGT00940000153229.A.a.b	ENSGT00940000158138	ENSGT00390000000568	ENSGT00950000182909.b.a.b
Long-tailed chinchilla	MODERN SPECIES	109	CABLES1 (ENSCLAG00000009135) ##12	TMEM241 (ENSCLAG00000008159)	RIOK3 (ENSCLAG00000006767)	RMC1 (ENSCLAG00000007215)	NPC1 (ENSCLAG00000008539)	ENSCLAG00000009107	ENSCLAG00000010376	TTC39C (ENSCLAG00000012781)	ENSCLAG00000015684	OSBPL1A (ENSCLAG00000011248)	IMPACT (ENSCLAG00000008879)	HRH4 (ENSCLAG00000009200)	ZNF521 (ENSCLAG00000010565)	SS18 (ENSCLAG00000012381)	PSMA8 (ENSCLAG00000009449)	TAF4B (ENSCLAG00000006974) ##22	KCTD1 (ENSCLAG00000007823)	CHST9 (ENSCLAG00000008170)	CDH2 (ENSCLAG00000015205)	ENSCLAG00000016416	DSC3 (ENSCLAG00000016462)	DSC2 (ENSCLAG00000010145)	DSC1 (ENSCLAG00000012931)	DSG1 (ENSCLAG00000009520)	DSG4 (ENSCLAG00000014083)	DSG3 (ENSCLAG00000014163)	ENSCLAG00000012614	TTR (ENSCLAG00000016064)	B4GALT6 (ENSCLAG00000016196)	TRAPPC8 (ENSCLAG00000016681)	RNF125 (ENSCLAG00000008643)
Degu	MODERN SPECIES	44												ENSODEG00000018302	ZNF521 (ENSODEG00000018410)	SS18 (ENSODEG00000018466)	PSMA8 (ENSODEG00000018364)	TAF4B (ENSODEG00000018462) ##22	ENSODEG00000020494	KCTD1 (ENSODEG00000018447)	AQP4 (ENSODEG00000018294)	CHST9 (ENSODEG00000018320)	CDH2 (ENSODEG00000018382)	ENSODEG00000020488	DSC3 (ENSODEG00000018293)	DSC2 (ENSODEG00000018413)	DSC1 (ENSODEG00000018325)	DSG1 (ENSODEG00000018310)	DSG4 (ENSODEG00000018468)	DSG3 (ENSODEG00000018316)	ENSODEG00000018312	TTR (ENSODEG00000018347)	B4GALT6 (ENSODEG00000018324)
Guinea pig	MODERN SPECIES	14	CABLES1 (ENSCPOG00000010935) ##12	ENSCPOG00000007986	RIOK3 (ENSCPOG00000007991)	RMC1 (ENSCPOG00000006222)	NPC1 (ENSCPOG00000006230)	ANKRD29 (ENSCPOG00000007611)	LAMA3 (ENSCPOG00000007620)	TTC39C (ENSCPOG00000025455)	CABYR (ENSCPOG00000008281)	OSBPL1A (ENSCPOG00000008285)	IMPACT (ENSCPOG00000035662)	HRH4 (ENSCPOG00000001943)	ZNF521 (ENSCPOG00000015173)	SS18 (ENSCPOG00000004706)	PSMA8 (ENSCPOG00000012268)	TAF4B (ENSCPOG00000001414) ##22	ENSCPOG00000003866	AQP4 (ENSCPOG00000004446)	CHST9 (ENSCPOG00000010439)	CDH2 (ENSCPOG00000012391)	DSC2 (ENSCPOG00000005506)	DSC1 (ENSCPOG00000038286)	DSG1 (ENSCPOG00000005375)	DSG4 (ENSCPOG00000005388)	ENSCPOG00000036894	DSG2 (ENSCPOG00000038318)	TTR (ENSCPOG00000012845)	B4GALT6 (ENSCPOG00000039163)	TRAPPC8 (ENSCPOG00000012560)	RNF125 (ENSCPOG00000033178)	RNF138 (ENSCPOG00000003463)
Sciuridae	ANCESTRAL SPECIES	31	ENSGT00400000022086.a ##12	ENSGT00510000048348	ENSGT00940000157008	ENSGT00390000009127	ENSGT00940000156182	ENSGT00940000153902.a	ENSGT00940000155638	ENSGT00950000182917.b	ENSGT00390000000444	ENSGT00940000155295	ENSGT00390000017571	ENSGT00940000162118	ENSGT00940000159287	ENSGT00940000156352	ENSGT00940000160354	ENSGT00390000011620.a.a.a ##22	ENSGT00940000156453.a	ENSGT00940000156037.a	ENSGT00940000160563	ENSGT00940000155981	ENSGT01030000234624.a.a.b	ENSGT01030000234624.a.a.a	ENSGT01030000234624.a.b	ENSGT01030000234624.b.a.b.a.b	ENSGT01030000234624.b.a.b.b	ENSGT01030000234624.b.a.b.a.a	ENSGT01030000234624.b.a.a	ENSGT00940000153229.A.a.b	ENSGT00940000158138	ENSGT00390000000568	ENSGT00950000182909.b.a.b
Marmotini	ANCESTRAL SPECIES	31	ENSGT00400000022086.a ##12	ENSGT00510000048348	ENSGT00940000157008	ENSGT00390000009127	ENSGT00940000156182	ENSGT00940000153902.a	ENSGT00940000155638.qb	ENSGT00950000182917.b	ENSGT00390000000444	ENSGT00940000155295	ENSGT00390000017571	ENSGT00940000162118	ENSGT00940000159287	ENSGT00940000156352	ENSGT00940000160354	ENSGT00390000011620.a.a.a ##22	ENSGT00940000156453.a	ENSGT00940000156037.a	ENSGT00940000160563	ENSGT00940000155981	ENSGT01030000234624.a.a.b	ENSGT01030000234624.a.a.a	ENSGT01030000234624.a.b	ENSGT01030000234624.b.a.b.a.b	ENSGT01030000234624.b.a.b.b	ENSGT01030000234624.b.a.b.a.a	ENSGT01030000234624.b.a.a	ENSGT00940000153229.A.a.b	ENSGT00940000158138	ENSGT00390000000568	ENSGT00950000182909.b.a.b
Alpin marmot	MODERN SPECIES	10	RMC1 (ENSMMMG00000009792)	NPC1 (ENSMMMG00000009738)	ANKRD29 (ENSMMMG00000009665)	ENSMMMG00000009651	ENSMMMG00000009558	TTC39C (ENSMMMG00000009511)	ENSMMMG00000009452	OSBPL1A (ENSMMMG00000009196)	IMPACT (ENSMMMG00000009173)	HRH4 (ENSMMMG00000009142)	ZNF521 (ENSMMMG00000009091)	ENSMMMG00000009075	ENSMMMG00000008900	PSMA8 (ENSMMMG00000008885)	ENSMMMG00000008879	TAF4B (ENSMMMG00000008851) ##22	ENSMMMG00000008841	ENSMMMG00000008830	AQP4 (ENSMMMG00000008817)	CHST9 (ENSMMMG00000008809)	CDH2 (ENSMMMG00000008743)	DSC3 (ENSMMMG00000008685)	DSC2 (ENSMMMG00000008624)	DSC1 (ENSMMMG00000008573)	DSG1 (ENSMMMG00000008551)	DSG4 (ENSMMMG00000008531)	DSG3 (ENSMMMG00000008516)	DSG2 (ENSMMMG00000008445)	ENSMMMG00000008437	B4GALT6 (ENSMMMG00000008421)	TRAPPC8 (ENSMMMG00000008335)
Marmotini_b	ANCESTRAL SPECIES	146	ENSGT00400000022086.a ##12	ENSGT00510000048348	ENSGT00940000157008	ENSGT00390000009127	ENSGT00940000156182	ENSGT00940000153902.a	ENSGT00940000155638.qb	ENSGT00950000182917.b	ENSGT00390000000444	ENSGT00940000155295	ENSGT00390000017571	ENSGT00940000162118	ENSGT00940000159287	ENSGT00940000156352	ENSGT00940000160354	ENSGT00390000011620.a.a.a ##22	ENSGT00940000156453.a	ENSGT00940000156037.a	ENSGT00940000160563	ENSGT00940000155981
Squirrel	MODERN SPECIES	150	CABLES1 (ENSSTOG00000010410) ##12	TMEM241 (ENSSTOG00000030216)	RIOK3 (ENSSTOG00000006517)	RMC1 (ENSSTOG00000006546)	NPC1 (ENSSTOG00000006597)	ANKRD29 (ENSSTOG00000006644)	LAMA3 (ENSSTOG00000006658)	TTC39C (ENSSTOG00000028349)	CABYR (ENSSTOG00000015498)	OSBPL1A (ENSSTOG00000006443)	IMPACT (ENSSTOG00000027817)	HRH4 (ENSSTOG00000010835)	ZNF521 (ENSSTOG00000012398)	SS18 (ENSSTOG00000015699)	PSMA8 (ENSSTOG00000015708)	TAF4B (ENSSTOG00000015714) ##22	ENSSTOG00000020222	AQP4 (ENSSTOG00000013318)	CHST9 (ENSSTOG00000013145)	CDH2 (ENSSTOG00000002172)
Arctic ground squirrel	MODERN SPECIES	55	RIOK3 (ENSUPAG00010012142)	RMC1 (ENSUPAG00010012152)	NPC1 (ENSUPAG00010012172)	ANKRD29 (ENSUPAG00010012216)	ENSUPAG00010012267	ENSUPAG00010012301	TTC39C (ENSUPAG00010012342)	ENSUPAG00010012372	OSBPL1A (ENSUPAG00010012424)	ENSUPAG00010012655	IMPACT (ENSUPAG00010012665)	HRH4 (ENSUPAG00010012682)	ZNF521 (ENSUPAG00010012699)	SS18 (ENSUPAG00010012720)	PSMA8 (ENSUPAG00010012791)	TAF4B (ENSUPAG00010012814) ##22	KCTD1 (ENSUPAG00010012862)	AQP4 (ENSUPAG00010012893)	CHST9 (ENSUPAG00010012950)	CDH2 (ENSUPAG00010012964)
Eurasian red squirrel	MODERN SPECIES	4	ENSSVLG00005006776	ENSSVLG00005006800	ENSSVLG00005006973	RMC1 (ENSSVLG00005007150)	NPC1 (ENSSVLG00005007206)	ANKRD29 (ENSSVLG00005007255)	TTC39C (ENSSVLG00005009532)	CABYR (ENSSVLG00005009576)	OSBPL1A (ENSSVLG00005009639)	ENSSVLG00005009739	HRH4 (ENSSVLG00005009808)	ZNF521 (ENSSVLG00005010017)	ENSSVLG00005010156	SS18 (ENSSVLG00005010199)	PSMA8 (ENSSVLG00005010327)	TAF4B (ENSSVLG00005010504) ##22	KCTD1 (ENSSVLG00005010735)	ENSSVLG00005010820	ENSSVLG00005010863	AQP4 (ENSSVLG00005010877)	CHST9 (ENSSVLG00005010956)	ENSSVLG00005011071	CDH2 (ENSSVLG00005011122)	ENSSVLG00005011342	DSC3 (ENSSVLG00005011401)	DSC2 (ENSSVLG00005011858)	DSC1 (ENSSVLG00005012411)	DSG1 (ENSSVLG00005012802)	DSG4 (ENSSVLG00005013149)	ENSSVLG00005013223	DSG2 (ENSSVLG00005013337)
Lagomorpha	ANCESTRAL SPECIES	41	ENSGT00400000022086.a ##12	ENSGT00510000048348	ENSGT00940000157008	ENSGT00390000009127	ENSGT00940000156182	ENSGT00940000153902.a	ENSGT00940000155638	ENSGT00950000182917.b	ENSGT00390000000444	ENSGT00940000155295	ENSGT00390000017571	ENSGT00940000162118	ENSGT00940000159287	ENSGT00940000156352	ENSGT00940000160354	ENSGT00390000011620.a.a.a ##22	ENSGT00940000156453.a	ENSGT00940000156037.a	ENSGT00940000160563	ENSGT00940000155981	ENSGT01030000234624.a.a.b	ENSGT01030000234624.a.a.a	ENSGT01030000234624.a.b	ENSGT01030000234624.b.a.b.a.b	ENSGT01030000234624.b.a.b.b	ENSGT01030000234624.b.a.b.a.a	ENSGT01030000234624.b.a.a	ENSGT00940000153229.A.a.b	ENSGT00940000158138	ENSGT00390000000568	ENSGT00950000182909.b.a.b
Rabbit	MODERN SPECIES	20	RIOK3 (ENSOCUG00000016820)	RMC1 (ENSOCUG00000009837)	NPC1 (ENSOCUG00000009850)	ANKRD29 (ENSOCUG00000009866)	LAMA3 (ENSOCUG00000009869)	TTC39C (ENSOCUG00000017109)	ENSOCUG00000024121	OSBPL1A (ENSOCUG00000008393)	ENSOCUG00000029300	IMPACT (ENSOCUG00000013901)	HRH4 (ENSOCUG00000001327)	ZNF521 (ENSOCUG00000005774)	SS18 (ENSOCUG00000009081)	PSMA8 (ENSOCUG00000009092)	ENSOCUG00000013818	TAF4B (ENSOCUG00000005480) ##22	ENSOCUG00000014635	ENSOCUG00000035713	ENSOCUG00000037440	AQP4 (ENSOCUG00000008833)	CHST9 (ENSOCUG00000004444)	CDH2 (ENSOCUG00000003656)	ENSOCUG00000023260	ENSOCUG00000034452	ENSOCUG00000030006	ENSOCUG00000021903	DSC3 (ENSOCUG00000029143)	DSC2 (ENSOCUG00000012518)	DSC1 (ENSOCUG00000012534)	DSG1 (ENSOCUG00000006498)	DSG4 (ENSOCUG00000007342)
Pika	MODERN SPECIES	3426																ENSOPRG00000010329 ##22	ENSOPRG00000010369
Tree shrew	MODERN SPECIES	2013																TAF4B (ENSTBEG00000002967) ##22	ENSTBEG00000003350
Platypus	MODERN SPECIES	18	RIOK3 (ENSOANG00000012074)	RMC1 (ENSOANG00000001464)	NPC1 (ENSOANG00000012193)	ENSOANG00000020428	LAMA3 (ENSOANG00000003469)	TTC39C (ENSOANG00000003123)	ENSOANG00000031837	OSBPL1A (ENSOANG00000022107)	IMPACT (ENSOANG00000045979)	ENSOANG00000011424	ENSOANG00000037355	ENSOANG00000039243	ENSOANG00000040926	ZNF521 (ENSOANG00000009055)	SS18 (ENSOANG00000009058)	ENSOANG00000009062 ##22	KCTD1 (ENSOANG00000009068)	AQP4 (ENSOANG00000009069)	CHST9 (ENSOANG00000004983)	CDH2 (ENSOANG00000005632)	ENSOANG00000005628	DSC1 (ENSOANG00000005624)	DSG1 (ENSOANG00000005622)	DSG4 (ENSOANG00000005621)	DSG3 (ENSOANG00000005620)	ENSOANG00000049343	TTR (ENSOANG00000005619)	B4GALT6 (ENSOANG00000036755)	TRAPPC8 (ENSOANG00000005617)	ENSOANG00000046725	RNF138 (ENSOANG00000005616)
Sauria	ANCESTRAL SPECIES		ENSGT00940000170513	ENSGT00940000157008	ENSGT00390000009127	ENSGT00940000156182	ENSGT00940000153902.a	ENSGT00940000155638	ENSGT00950000182917.b	ENSGT00390000000444	ENSGT00940000155295	ENSGT00390000017571	ENSGT00940000163206.b	ENSGT00940000162118	ENSGT00940000159287	ENSGT00940000156352	ENSGT00940000160354	ENSGT00390000011620.a.a.a ##22	ENSGT00940000156453.a	ENSGT00940000156037.a	ENSGT00940000160563	ENSGT00940000155981	ENSGT01030000234624.a	ENSGT01030000234624.b.a.b	ENSGT01030000234624.b.a.a	ENSGT00940000153229.A.a.b	ENSGT00940000158138	ENSGT01100000263524.B.b.b	ENSGT00940000162714	ENSGT00390000000568	ENSGT00950000182909.b.a.b	ENSGT00950000182909.b.a.a	ENSGT00950000183111.b.a
Archelosauria	ANCESTRAL SPECIES	5	ENSGT00940000170513	ENSGT00940000157008	ENSGT00390000009127	ENSGT00940000156182	ENSGT00940000153902.a	ENSGT00940000155638	ENSGT00950000182917.b	ENSGT00390000000444	ENSGT00940000155295	ENSGT00390000017571	ENSGT00940000163206.b	ENSGT00940000162118	ENSGT00940000159287	ENSGT00940000156352	ENSGT00940000160354	ENSGT00390000011620.a.a.a ##22	ENSGT00940000156453.a	ENSGT00940000156037.a	ENSGT00940000160563	ENSGT00940000155981	ENSGT01030000234624.a	ENSGT01030000234624.b.a.b	ENSGT01030000234624.b.a.a	ENSGT00940000153229.A.a.b	ENSGT00940000158138	ENSGT01100000263524.B.b.b	ENSGT00940000162714	ENSGT00390000000568	ENSGT00950000182909.b.a.b	ENSGT00950000182909.b.a.a	ENSGT00950000183111.b.a
Archosauria	ANCESTRAL SPECIES		ENSGT00510000048348	ENSGT00940000157008	ENSGT00390000009127	ENSGT00940000156182	ENSGT00940000153902.a	ENSGT00940000155638	ENSGT00950000182917.b	ENSGT00390000000444	ENSGT00940000155295	ENSGT00390000017571	ENSGT00940000163206.b	ENSGT00940000162118	ENSGT00940000159287	ENSGT00940000156352	ENSGT00940000160354	ENSGT00390000011620.a.a.a ##22	ENSGT00940000156453.a	ENSGT00940000156037.a	ENSGT00940000160563	ENSGT00960000189753	ENSGT00940000155981	ENSGT01030000234624.a	ENSGT01030000234624.b.a.b	ENSGT01030000234624.b.a.a	ENSGT00940000153229.A.a.b	ENSGT00940000158138	ENSGT01100000263524.B.b.b	ENSGT00940000162714	ENSGT00390000000568	ENSGT00950000182909.b.a.b	ENSGT00950000182909.b.a.a
Aves	ANCESTRAL SPECIES	9	ENSGT00400000022086.a ##12	ENSGT00510000048348	ENSGT00940000157008	ENSGT00390000009127	ENSGT00940000156182	ENSGT00940000153902.a	ENSGT00940000155638	ENSGT00950000182917.b	ENSGT00390000000444	ENSGT00940000155295	ENSGT00390000017571	ENSGT00940000163206.b	ENSGT00940000162118	ENSGT00940000159287	ENSGT00940000156352	ENSGT00390000011620.a.a.a ##22	ENSGT00940000156453.a	ENSGT00940000156037.a	ENSGT00940000160563	ENSGT00960000189753	ENSGT00940000155981	ENSGT01030000234624.a	ENSGT01030000234624.b.a.b	ENSGT01030000234624.b.a.a	ENSGT00940000153229.A.a.b	ENSGT00940000158138	ENSGT01100000263524.B.b.b	ENSGT00940000162714	ENSGT00390000000568	ENSGT00950000182909.b.a.b	ENSGT00950000182909.b.a.a
Neognathae	ANCESTRAL SPECIES		ENSGT00400000022086.a ##12	ENSGT00510000048348	ENSGT00940000157008	ENSGT00390000009127	ENSGT00940000156182	ENSGT00940000153902.a	ENSGT00940000155638	ENSGT00950000182917.b	ENSGT00390000000444	ENSGT00940000155295	ENSGT00390000017571	ENSGT00940000163206.b	ENSGT00940000162118	ENSGT00940000159287	ENSGT00940000156352	ENSGT00390000011620.a.a.a ##22	ENSGT00940000156453.a	ENSGT00940000156037.a	ENSGT00940000160563	ENSGT00960000189753	ENSGT00940000155981	ENSGT00960000189675	ENSGT01030000234624.a	ENSGT01030000234624.b.a.b	ENSGT01030000234624.b.a.a	ENSGT00940000153229.A.a.b	ENSGT01050000245154	ENSGT00940000158138	ENSGT01100000263524.B.b.b	ENSGT00390000000568	ENSGT00950000182909.b.a.b
Neognathae_b	ANCESTRAL SPECIES	3	ENSGT00530000063835.b ##11	ENSGT00400000022086.a ##12	ENSGT00510000048348	ENSGT00940000157008	ENSGT00390000009127	ENSGT00940000156182	ENSGT00940000153902.a	ENSGT00940000155638	ENSGT00950000182917.b	ENSGT00940000155295	ENSGT00390000017571	ENSGT00940000163206.b	ENSGT00940000162118	ENSGT00940000159287	ENSGT00940000156352	ENSGT00390000011620.a.a.a ##22	ENSGT00940000156453.a	ENSGT00940000156037.a	ENSGT00940000160563	ENSGT00960000189753	ENSGT00940000155981	ENSGT00960000189675	ENSGT01030000234624.a	ENSGT01030000234624.b.a.b	ENSGT01030000234624.b.a.a	ENSGT00940000153229.A.a.b	ENSGT01050000245154	ENSGT00940000158138	ENSGT01100000263524.B.b.b	ENSGT00390000000568	ENSGT00950000182909.b.a.b
Passeriformes	ANCESTRAL SPECIES		ENSGT00400000022086.a ##12	ENSGT00510000048348	ENSGT00940000157008	ENSGT00390000009127	ENSGT00940000156182	ENSGT00940000153902.a	ENSGT00940000155638	ENSGT00950000182917.b	ENSGT00940000155295	ENSGT00390000017571	ENSGT00940000163206.b.k	ENSGT00940000162118	ENSGT00940000163206.b.l	ENSGT00940000159287	ENSGT00940000156352	ENSGT00390000011620.a.a.a ##22	ENSGT00940000156453.a	ENSGT00940000156037.a	ENSGT00940000160563	ENSGT00940000155981	ENSGT00960000189675	ENSGT01030000234624.a	ENSGT01030000234624.b.a.b	ENSGT01030000234624.b.a.a	ENSGT00940000153229.A.a.b	ENSGT00940000158138	ENSGT00390000000568	ENSGT00950000182909.b.a.a	ENSGT00950000183111.b.a	ENSGT00530000063834.e.a	ENSGT00940000166646
Great tit	MODERN SPECIES	11	RBBP8 (ENSPMJG00000014691) ##11	CABLES1 (ENSPMJG00000014693) ##12	TMEM241 (ENSPMJG00000014694)	RIOK3 (ENSPMJG00000014695)	RMC1 (ENSPMJG00000014696)	NPC1 (ENSPMJG00000014697)	ANKRD29 (ENSPMJG00000014699)	LAMA3 (ENSPMJG00000014703)	TTC39C (ENSPMJG00000014721)	OSBPL1A (ENSPMJG00000014724)	IMPACT (ENSPMJG00000014725)	ENSPMJG00000014726	ENSPMJG00000014727	ZNF521 (ENSPMJG00000014732)	SS18 (ENSPMJG00000014736)	TAF4B (ENSPMJG00000014737) ##22	KCTD1 (ENSPMJG00000014738)	AQP4 (ENSPMJG00000014739)	CHST9 (ENSPMJG00000014740)	CDH2 (ENSPMJG00000014743)	ENSPMJG00000014744	ENSPMJG00000014750	ENSPMJG00000014751	DSG2 (ENSPMJG00000014752)	ENSPMJG00000014753	TTR (ENSPMJG00000014754)	B4GALT6 (ENSPMJG00000014755)	TRAPPC8 (ENSPMJG00000014756)	RNF138 (ENSPMJG00000014757)	MEP1B (ENSPMJG00000014758)	GAREM1 (ENSPMJG00000014760)
Passeriformes_d	ANCESTRAL SPECIES		ENSGT00530000063835.b ##11	ENSGT00400000022086.a ##12	ENSGT00510000048348	ENSGT00940000157008	ENSGT00390000009127	ENSGT00940000156182	ENSGT00940000153902.a	ENSGT00940000155638.h	ENSGT00950000182917.b	ENSGT00940000155295	ENSGT00390000017571	ENSGT00940000163206.b.k	ENSGT00940000163206.b.l	ENSGT00940000159287	ENSGT00940000156352	ENSGT00390000011620.a.a.a ##22	ENSGT00940000156453.a	ENSGT00940000156037.a	ENSGT00940000160563	ENSGT00940000155981	ENSGT00960000189675	ENSGT01030000234624.a	ENSGT01030000234624.b.a.b	ENSGT01030000234624.b.a.a	ENSGT00940000153229.A.a.b	ENSGT00940000158138	ENSGT00390000000568	ENSGT00950000182909.b.a.a	ENSGT00950000183111.b.a	ENSGT00530000063834.e.a	ENSGT00940000166646
Passeriformes_g	ANCESTRAL SPECIES	3	ENSGT00400000022086.a ##12	ENSGT00510000048348	ENSGT00940000157008	ENSGT00390000009127	ENSGT00940000156182	ENSGT00940000153902.a	ENSGT00940000155638.h	ENSGT00950000182917.b	ENSGT00940000155295	ENSGT00390000017571	ENSGT00940000163206.b.k	ENSGT00940000162118	ENSGT00940000163206.b.l	ENSGT00940000159287	ENSGT00940000156352	ENSGT00390000011620.a.a.a ##22	ENSGT00940000156453.a	ENSGT00940000156037.a	ENSGT00940000160563	ENSGT00940000155981	ENSGT00960000189675	ENSGT01030000234624.a	ENSGT01030000234624.b.a.b	ENSGT01030000234624.b.a.a	ENSGT00940000153229.A.a.b	ENSGT00940000158138	ENSGT00390000000568	ENSGT00950000182909.b.a.a	ENSGT00950000183111.b.a	ENSGT00530000063834.e.a	ENSGT00940000166646
Medium ground finch	MODERN SPECIES	8	RBBP8 (ENSGFOG00000005486) ##11	CABLES1 (ENSGFOG00000005494) ##12	TMEM241 (ENSGFOG00000005506)	RIOK3 (ENSGFOG00000005522)	RMC1 (ENSGFOG00000005533)	NPC1 (ENSGFOG00000005575)	ANKRD29 (ENSGFOG00000005614)	ENSGFOG00000005670	TTC39C (ENSGFOG00000005970)	OSBPL1A (ENSGFOG00000006028)	IMPACT (ENSGFOG00000006045)	ENSGFOG00000006056	ENSGFOG00000006143	ZNF521 (ENSGFOG00000006166)	SS18 (ENSGFOG00000006185)	TAF4B (ENSGFOG00000006200) ##22	KCTD1 (ENSGFOG00000006239)	AQP4 (ENSGFOG00000006250)	CHST9 (ENSGFOG00000006321)	CDH2 (ENSGFOG00000006326)	ENSGFOG00000006365	ENSGFOG00000006410	DSG2 (ENSGFOG00000006416)	ENSGFOG00000006434	TTR (ENSGFOG00000006439)	B4GALT6 (ENSGFOG00000006443)	TRAPPC8 (ENSGFOG00000006449)	RNF138 (ENSGFOG00000006499)	MEP1B (ENSGFOG00000006510)	GAREM1 (ENSGFOG00000006533)	ENSGFOG00000006538
Passeroidea	ANCESTRAL SPECIES	2	ENSGT00400000022086.a ##12	ENSGT00510000048348	ENSGT00940000157008	ENSGT00390000009127	ENSGT00940000156182	ENSGT00940000153902.a	ENSGT00940000155638.h	ENSGT00950000182917.b	ENSGT00940000155295	ENSGT00390000017571	ENSGT00940000163206.b.k	ENSGT00940000162118	ENSGT00940000163206.b.l	ENSGT00940000159287	ENSGT00940000156352	ENSGT00390000011620.a.a.a ##22	ENSGT00940000156453.a	ENSGT00940000156037.a	ENSGT00940000160563	ENSGT00940000155981	ENSGT00960000189675	ENSGT01030000234624.a	ENSGT01030000234624.b.a.b	ENSGT01030000234624.b.a.a	ENSGT00940000153229.A.a.b	ENSGT00940000158138	ENSGT00390000000568	ENSGT00950000182909.b.a.a	ENSGT00950000183111.b.a	ENSGT00530000063834.e.a	ENSGT00940000166646
Zebra finch	MODERN SPECIES	12	TMEM241 (ENSTGUG00000010387)	RIOK3 (ENSTGUG00000010392)	RMC1 (ENSTGUG00000010413)	NPC1 (ENSTGUG00000010427)	ANKRD29 (ENSTGUG00000010477)	ENSTGUG00000028768	ENSTGUG00000010481	TTC39C (ENSTGUG00000010516)	OSBPL1A (ENSTGUG00000010525)	IMPACT (ENSTGUG00000010551)	ENSTGUG00000022147	ENSTGUG00000024544	ENSTGUG00000010562	ZNF521 (ENSTGUG00000010575)	SS18 (ENSTGUG00000010587)	TAF4B (ENSTGUG00000010600) ##22	KCTD1 (ENSTGUG00000010606)	AQP4 (ENSTGUG00000020250)	CHST9 (ENSTGUG00000010618)	CDH2 (ENSTGUG00000010620)	ENSTGUG00000010651	ENSTGUG00000010666	DSG2 (ENSTGUG00000010683)	TTR (ENSTGUG00000010708)	TTR (ENSTGUG00000010734)	B4GALT6 (ENSTGUG00000010735)	TRAPPC8 (ENSTGUG00000027784)	MEP1B (ENSTGUG00000010758)	GAREM1 (ENSTGUG00000010770)	ENSTGUG00000010771	KLHL14 (ENSTGUG00000010774)
Common canary	MODERN SPECIES		CABLES1 (ENSSCAG00000010334) ##12	TMEM241 (ENSSCAG00000010342)	RIOK3 (ENSSCAG00000010350)	RMC1 (ENSSCAG00000010357)	NPC1 (ENSSCAG00000010365)	ANKRD29 (ENSSCAG00000010383)	LAMA3 (ENSSCAG00000010510)	TTC39C (ENSSCAG00000011187)	ENSSCAG00000011217	ENSSCAG00000011403	IMPACT (ENSSCAG00000011455)	ENSSCAG00000011461	ENSSCAG00000011464	ZNF521 (ENSSCAG00000011472)	SS18 (ENSSCAG00000011495)	TAF4B (ENSSCAG00000011517) ##22	KCTD1 (ENSSCAG00000011534)	AQP4 (ENSSCAG00000011555)	CHST9 (ENSSCAG00000011560)	CDH2 (ENSSCAG00000011659)	ENSSCAG00000012046	ENSSCAG00000012052	ENSSCAG00000012064	DSG2 (ENSSCAG00000012074)	ENSSCAG00000012083	TTR (ENSSCAG00000012088)	B4GALT6 (ENSSCAG00000012092)	TRAPPC8 (ENSSCAG00000012117)	RNF138 (ENSSCAG00000012169)	MEP1B (ENSSCAG00000012174)	GAREM1 (ENSSCAG00000012179)
Flycatcher	MODERN SPECIES	11	TMEM241 (ENSFALG00000006149)	RIOK3 (ENSFALG00000006145)	ENSFALG00000025348	RMC1 (ENSFALG00000006142)	NPC1 (ENSFALG00000006135)	ANKRD29 (ENSFALG00000027285)	ENSFALG00000023167	ENSFALG00000006094	TTC39C (ENSFALG00000006085)	OSBPL1A (ENSFALG00000006083)	IMPACT (ENSFALG00000006073)	ENSFALG00000006069	ENSFALG00000027497	ZNF521 (ENSFALG00000006065)	SS18 (ENSFALG00000006062)	TAF4B (ENSFALG00000006055) ##22	KCTD1 (ENSFALG00000028651)	AQP4 (ENSFALG00000006038)	CHST9 (ENSFALG00000028190)	CDH2 (ENSFALG00000006017)	ENSFALG00000005996	ENSFALG00000005990	DSG2 (ENSFALG00000005980)	ENSFALG00000005970	B4GALT6 (ENSFALG00000005950)	TTR (ENSFALG00000024765)	TRAPPC8 (ENSFALG00000005939)	RNF138 (ENSFALG00000005931)	MEP1B (ENSFALG00000005911)	GAREM1 (ENSFALG00000005902)	ENSFALG00000005895
Neognathae_c	ANCESTRAL SPECIES	1	ENSGT00530000063835.b ##11	ENSGT00530000063835.a #11	ENSGT00400000022086.a ##12	ENSGT00510000048348	ENSGT00940000157008	ENSGT00390000009127	ENSGT00940000156182	ENSGT00940000153902.a	ENSGT00940000155638	ENSGT00950000182917.b	ENSGT00940000155295	ENSGT00390000017571	ENSGT00940000163206.b	ENSGT00940000159287	ENSGT00940000156352	ENSGT00390000011620.a.a.a ##22	ENSGT00940000156453.a	ENSGT00940000156037.a	ENSGT00940000160563	ENSGT00960000189753	ENSGT00940000155981	ENSGT00960000189675	ENSGT01030000234624.a	ENSGT01030000234624.b.a.b	ENSGT01030000234624.b.a.a	ENSGT00940000153229.A.a.b	ENSGT01050000245154	ENSGT00940000158138	ENSGT01100000263524.B.b.b	ENSGT00390000000568	ENSGT00950000182909.b.a.b
Kakapo	MODERN SPECIES		CABLES1 (ENSSHBG00005009082) ##12	TMEM241 (ENSSHBG00005009059)	RIOK3 (ENSSHBG00005009049)	RMC1 (ENSSHBG00005009040)	NPC1 (ENSSHBG00005007877)	ANKRD29 (ENSSHBG00005007302)	LAMA3 (ENSSHBG00005005135)	TTC39C (ENSSHBG00005005036)	OSBPL1A (ENSSHBG00005005020)	IMPACT (ENSSHBG00005005008)	ENSSHBG00005004994	ENSSHBG00005004985	ENSSHBG00005004981	ZNF521 (ENSSHBG00005004975)	SS18 (ENSSHBG00005004969)	TAF4B (ENSSHBG00005004954) ##22	KCTD1 (ENSSHBG00005004941)	AQP4 (ENSSHBG00005004933)	CHST9 (ENSSHBG00005004926)	ENSSHBG00005004915	CDH2 (ENSSHBG00005004911)	ENSSHBG00005004880	ENSSHBG00005004865	ENSSHBG00005004856	DSG2 (ENSSHBG00005004817)	TTR (ENSSHBG00005004802)	ENSSHBG00005004799	B4GALT6 (ENSSHBG00005004796)	ENSSHBG00005004792	TRAPPC8 (ENSSHBG00005004779)	RNF138 (ENSSHBG00005004770)
Golden eagle	MODERN SPECIES	20	RMC1 (ENSACCG00020006842)	NPC1 (ENSACCG00020006806)	ANKRD29 (ENSACCG00020006785)	LAMA3 (ENSACCG00020006451)	TTC39C (ENSACCG00020006206)	ENSACCG00020006196	ENSACCG00020006193	OSBPL1A (ENSACCG00020006060)	IMPACT (ENSACCG00020005943)	ENSACCG00020005874	ENSACCG00020005727	ENSACCG00020005657	ENSACCG00020005642	ZNF521 (ENSACCG00020005631)	SS18 (ENSACCG00020005608)	TAF4B (ENSACCG00020005569) ##22	KCTD1 (ENSACCG00020005550)	AQP4 (ENSACCG00020005533)	CHST9 (ENSACCG00020005523)	CDH2 (ENSACCG00020005505)	ENSACCG00020005491	ENSACCG00020005463	ENSACCG00020005412	DSG2 (ENSACCG00020005394)	TTR (ENSACCG00020005383)	ENSACCG00020005363	B4GALT6 (ENSACCG00020005350)	ENSACCG00020005338	TRAPPC8 (ENSACCG00020005223)	RNF125 (ENSACCG00020005168)	RNF138 (ENSACCG00020005153)
Galloanserae	ANCESTRAL SPECIES		ENSGT00530000063835.b ##11	ENSGT00400000022086.a ##12	ENSGT00510000048348	ENSGT00940000157008	ENSGT00390000009127	ENSGT00940000156182	ENSGT00940000153902.a	ENSGT00940000155638	ENSGT00950000182917.b	ENSGT00390000000444	ENSGT00940000155295	ENSGT00390000017571	ENSGT00940000163206.b	ENSGT00940000159287	ENSGT00940000156352	ENSGT00390000011620.a.a.a ##22	ENSGT00940000156453.a	ENSGT00940000156037.a	ENSGT00940000160563	ENSGT00940000155981	ENSGT00960000189675	ENSGT01030000234624.a	ENSGT01030000234624.b.a.b	ENSGT01030000234624.b.a.a	ENSGT00940000153229.A.a.b	ENSGT01050000245154	ENSGT00940000158138	ENSGT01100000263524.B.b.b	ENSGT00390000000568	ENSGT00950000182909.b.a.a	ENSGT00950000183111.b.a
Anatidae	ANCESTRAL SPECIES	3	ENSGT00400000022086.a ##12	ENSGT00510000048348	ENSGT00940000157008	ENSGT00390000009127	ENSGT00940000156182	ENSGT00940000153902.a	ENSGT00940000155638	ENSGT00950000182917.b	ENSGT00390000000444	ENSGT00940000155295	ENSGT00390000017571	ENSGT00940000163206.b.h	ENSGT00940000163206.b.g	ENSGT00940000159287	ENSGT00940000156352	ENSGT00390000011620.a.a.a ##22	ENSGT00940000156453.a	ENSGT00940000156037.a	ENSGT00940000160563	ENSGT00940000155981	ENSGT01030000234624.a	ENSGT01030000234624.b.a.b	ENSGT01030000234624.b.a.a	ENSGT00940000153229.A.a.b	ENSGT01050000245154	ENSGT00940000158138	ENSGT01100000263524.B.b.b	ENSGT00390000000568	ENSGT00950000182909.b.a.a	ENSGT00950000183111.b.a	ENSGT00530000063834.e.a
Pink-footed goose	MODERN SPECIES	13	CABLES1 (ENSABRG00000016944) ##12	TMEM241 (ENSABRG00000016931)	RIOK3 (ENSABRG00000016913)	RMC1 (ENSABRG00000016910)	NPC1 (ENSABRG00000016905)	ANKRD29 (ENSABRG00000016904)	LAMA3 (ENSABRG00000016127)	TTC39C (ENSABRG00000015992)	ENSABRG00000015984	OSBPL1A (ENSABRG00000015967)	IMPACT (ENSABRG00000015961)	ENSABRG00000015958	ENSABRG00000015956	ZNF521 (ENSABRG00000015952)	SS18 (ENSABRG00000015928)	TAF4B (ENSABRG00000015907) ##22	KCTD1 (ENSABRG00000015895)	AQP4 (ENSABRG00000015887)	CHST9 (ENSABRG00000015884)	CDH2 (ENSABRG00000015865)	ENSABRG00000015840	ENSABRG00000015836	DSG2 (ENSABRG00000015828)	TTR (ENSABRG00000015823)	ENSABRG00000015819	B4GALT6 (ENSABRG00000015807)	ENSABRG00000015792	TRAPPC8 (ENSABRG00000015775)	RNF138 (ENSABRG00000015769)	MEP1B (ENSABRG00000015768)	GAREM1 (ENSABRG00000015765)
Duck	MODERN SPECIES	10	ENSAPLG00000020117	MRPL15 (ENSAPLG00000004466)	LYPLA1 (ENSAPLG00000004475)	TCEA1 (ENSAPLG00000004621)	RGS20 (ENSAPLG00000004749)	ATP6V1H (ENSAPLG00000003861)	OPRK1 (ENSAPLG00000003797)	ENSAPLG00000003336	CABYR (ENSAPLG00000022835)	OSBPL1A (ENSAPLG00000015641)	IMPACT (ENSAPLG00000002625)	ENSAPLG00000025102	ENSAPLG00000030325	ZNF521 (ENSAPLG00000003518)	SS18 (ENSAPLG00000003628)	TAF4B (ENSAPLG00000003724) ##22	KCTD1 (ENSAPLG00000003981)	AQP4 (ENSAPLG00000004032)	CHST9 (ENSAPLG00000018165)	CDH2 (ENSAPLG00000004203)	ENSAPLG00000005803	ENSAPLG00000007015	DSG2 (ENSAPLG00000007729)	ENSAPLG00000008874	TTR (ENSAPLG00000009008)	B4GALT6 (ENSAPLG00000009022)	ENSAPLG00000030375	TRAPPC8 (ENSAPLG00000007624)	RNF138 (ENSAPLG00000019822)	MEP1B (ENSAPLG00000007098)	GAREM1 (ENSAPLG00000006848)
Phasianidae	ANCESTRAL SPECIES	1	ENSGT00400000022086.a ##12	ENSGT00510000048348	ENSGT00940000157008	ENSGT00390000009127	ENSGT00940000156182	ENSGT00940000153902.a	ENSGT00940000155638.d	ENSGT00950000182917.b	ENSGT00390000000444	ENSGT00940000155295.w	ENSGT00390000017571	ENSGT00940000163206.b.i	ENSGT00940000163206.b.j	ENSGT00940000159287	ENSGT00940000156352	ENSGT00390000011620.a.a.a ##22	ENSGT00940000156453.a	ENSGT00940000156037.a	ENSGT00940000160563	ENSGT00940000155981	ENSGT00960000189675	ENSGT01030000234624.a	ENSGT01030000234624.b.a.b	ENSGT01030000234624.b.a.a	ENSGT00940000153229.A.a.b	ENSGT00940000158138	ENSGT01100000263524.B.b.b	ENSGT00390000000568	ENSGT00950000182909.b.a.a	ENSGT00950000183111.b.a	ENSGT00530000063834.e.a
Japanese quail	MODERN SPECIES	11	TMEM241 (ENSCJPG00005009277)	RIOK3 (ENSCJPG00005009278)	RMC1 (ENSCJPG00005009279)	NPC1 (ENSCJPG00005009280)	ANKRD29 (ENSCJPG00005009281)	ENSCJPG00005009282	ENSCJPG00005009283	TTC39C (ENSCJPG00005009285)	ENSCJPG00005009286	ENSCJPG00005009288	IMPACT (ENSCJPG00005009803)	ENSCJPG00005009806	ENSCJPG00005009807	ZNF521 (ENSCJPG00005009819)	SS18 (ENSCJPG00005009831)	TAF4B (ENSCJPG00005009836) ##22	KCTD1 (ENSCJPG00005009840)	AQP4 (ENSCJPG00005009848)	CHST9 (ENSCJPG00005009853)	CDH2 (ENSCJPG00005009862)	ENSCJPG00005009871	ENSCJPG00005009872	DSG2 (ENSCJPG00005009873)	B4GALT6 (ENSCJPG00005009874)	TTR (ENSCJPG00005009886)	ENSCJPG00005009891	ENSCJPG00005009897	ENSCJPG00005009898	TRAPPC8 (ENSCJPG00005009907)	RNF138 (ENSCJPG00005009915)	MEP1B (ENSCJPG00005009919)
Phasianidae_b	ANCESTRAL SPECIES	1	ENSGT00400000022086.a ##12	ENSGT00510000048348	ENSGT00940000157008	ENSGT00390000009127	ENSGT00940000156182	ENSGT00940000153902.a	ENSGT00940000155638.d	ENSGT00950000182917.b	ENSGT00390000000444	ENSGT00940000155295.w	ENSGT00390000017571	ENSGT00940000163206.b.i	ENSGT00940000163206.b.j	ENSGT00940000159287	ENSGT00940000156352	ENSGT00390000011620.a.a.a ##22	ENSGT00940000156453.a	ENSGT00940000156037.a	ENSGT00940000160563	ENSGT00940000155981	ENSGT00960000189675	ENSGT01030000234624.a	ENSGT01030000234624.b.a.b	ENSGT01030000234624.b.a.a	ENSGT00940000153229.A.a.b	ENSGT00940000158138	ENSGT01100000263524.B.b.b	ENSGT00390000000568	ENSGT00950000182909.b.a.a	ENSGT00950000183111.b.a	ENSGT00530000063834.e.a
Turkey	MODERN SPECIES	22	RBBP8 (ENSMGAG00000010015) ##11	CABLES1 (ENSMGAG00000010058) ##12	TMEM241 (ENSMGAG00000010071)	RMC1 (ENSMGAG00000010079)	NPC1 (ENSMGAG00000010105)	ANKRD29 (ENSMGAG00000010143)	LAMA3 (ENSMGAG00000010165)	TTC39C (ENSMGAG00000010250)	ENSMGAG00000017783	OSBPL1A (ENSMGAG00000010264)	IMPACT (ENSMGAG00000010303)	ENSMGAG00000010333	ENSMGAG00000020694	ZNF521 (ENSMGAG00000010352)	SS18 (ENSMGAG00000010358)	TAF4B (ENSMGAG00000010380) ##22	KCTD1 (ENSMGAG00000010382)	AQP4 (ENSMGAG00000010390)	CHST9 (ENSMGAG00000010389)	CDH2 (ENSMGAG00000010400)	ENSMGAG00000018029	ENSMGAG00000019994	ENSMGAG00000010851	ENSMGAG00000021300	ENSMGAG00000010842	ENSMGAG00000019025	ENSMGAG00000010820	PPDPFL (ENSMGAG00000021330)	ENSMGAG00000010813	ENSMGAG00000020855	ENSMGAG00000010806
Chicken	MODERN SPECIES	11	CABLES1 (ENSGALG00010004191) ##12	TMEM241 (ENSGALG00010004244)	RIOK3 (ENSGALG00010004787)	RMC1 (ENSGALG00010004803)	NPC1 (ENSGALG00010004859)	ANKRD29 (ENSGALG00010004902)	LAMA3 (ENSGALG00010004966)	TTC39C (ENSGALG00010005148)	ENSGALG00010005152	OSBPL1A (ENSGALG00010005172)	IMPACT (ENSGALG00010005181)	ENSGALG00010005188	ENSGALG00010005190	ZNF521 (ENSGALG00010005228)	SS18 (ENSGALG00010005508)	TAF4B (ENSGALG00010005536) ##22	KCTD1 (ENSGALG00010005542)	AQP4 (ENSGALG00010005544)	CHST9 (ENSGALG00010005573)	CDH2 (ENSGALG00010005621)	ENSGALG00010005627	ENSGALG00010004256	ENSGALG00010004296	DSG2 (ENSGALG00010004308)	TTR (ENSGALG00010006069)	TTR (ENSGALG00010004315)	B4GALT6 (ENSGALG00010004339)	OPN5L1 (ENSGALG00010004347)	TRAPPC8 (ENSGALG00010004356)	RNF138 (ENSGALG00010004044)	MEP1B (ENSGALG00010004061)
African ostrich	MODERN SPECIES	328	CABLES1 (ENSSCUG00000005338) ##12	TMEM241 (ENSSCUG00000005336)	RIOK3 (ENSSCUG00000005331)	RMC1 (ENSSCUG00000005329)	NPC1 (ENSSCUG00000005328)	ANKRD29 (ENSSCUG00000005323)	LAMA3 (ENSSCUG00000005292)	TTC39C (ENSSCUG00000005273)	CABYR (ENSSCUG00000005271)	OSBPL1A (ENSSCUG00000005265)	IMPACT (ENSSCUG00000005259)	ENSSCUG00000005256	ZNF521 (ENSSCUG00000005250)	SS18 (ENSSCUG00000005240)	ENSSCUG00000005234 #20	TAF4B (ENSSCUG00000005222) ##22	KCTD1 (ENSSCUG00000005214)	AQP4 (ENSSCUG00000005211)	CHST9 (ENSSCUG00000005208)
Australian saltwater crocodile	MODERN SPECIES		NPC1 (ENSCPRG00005014264)	ANKRD29 (ENSCPRG00005014266)	ENSCPRG00005014270	ENSCPRG00005014285	TTC39C (ENSCPRG00005014293)	ENSCPRG00005014296	OSBPL1A (ENSCPRG00005014312)	ENSCPRG00005014351	IMPACT (ENSCPRG00005014357)	ENSCPRG00005014362	ENSCPRG00005014365	ZNF521 (ENSCPRG00005014429)	ENSCPRG00005014481	SS18 (ENSCPRG00005014488)	PSMA8 (ENSCPRG00005014498)	TAF4B (ENSCPRG00005014526) ##22	ENSCPRG00005014535	AQP4 (ENSCPRG00005014557)	CHST9 (ENSCPRG00005014575)	ENSCPRG00005014598	CDH2 (ENSCPRG00005014667)	ENSCPRG00005015077	ENSCPRG00005015084	ENSCPRG00005015094	DSG2 (ENSCPRG00005015098)	TTR (ENSCPRG00005015105)	B4GALT6 (ENSCPRG00005015110)	ENSCPRG00005015122	TRAPPC8 (ENSCPRG00005015136)	RNF125 (ENSCPRG00005015190)	RNF138 (ENSCPRG00005015223)
Cryptodira	ANCESTRAL SPECIES	7	ENSGT00510000048348	ENSGT00940000170513	ENSGT00940000157008	ENSGT00390000009127	ENSGT00940000156182	ENSGT00940000153902.a	ENSGT00940000155638	ENSGT00950000182917.b	ENSGT00390000000444	ENSGT00940000155295	ENSGT00390000017571	ENSGT00940000163206.b	ENSGT00940000159287	ENSGT00940000156352	ENSGT00940000160354	ENSGT00390000011620.a.a.a ##22	ENSGT00940000156453.a	ENSGT00510000049120	ENSGT00940000156037.a	ENSGT00940000160563	ENSGT00940000155981	ENSGT01030000234624.a	ENSGT01030000234624.b.a.b	ENSGT01030000234624.b.a.a	ENSGT00940000153229.A.a.b	ENSGT00940000158138	ENSGT01100000263524.B.b.b	ENSGT00940000162714	ENSGT00390000000568	ENSGT00950000182909.b.a.b	ENSGT00950000182909.b.a.a
Testudinoidea	ANCESTRAL SPECIES		ENSGT00940000170513	ENSGT00940000157008	ENSGT00390000009127	ENSGT00940000156182	ENSGT00940000153902.a	ENSGT00940000155638	ENSGT00950000182917.b	ENSGT00390000000444	ENSGT00940000155295	ENSGT00390000017571	ENSGT00940000163206.b	ENSGT00940000158492.x	ENSGT00940000159287	ENSGT00940000156352	ENSGT00940000160354	ENSGT00390000011620.a.a.a ##22	ENSGT00940000156453.a	ENSGT00510000049120	ENSGT00940000156037.a	ENSGT00940000160563	ENSGT00940000155981	ENSGT01030000234624.a	ENSGT01030000234624.b.a.b	ENSGT01030000234624.b.a.a	ENSGT00940000153229.A.a.b	ENSGT00940000158138	ENSGT01100000263524.B.b.b	ENSGT00940000162714	ENSGT00390000000568	ENSGT00950000182909.b.a.b	ENSGT00950000182909.b.a.a
Emydidae	ANCESTRAL SPECIES		ENSGT00940000170513	ENSGT00940000157008	ENSGT00390000009127	ENSGT00940000156182	ENSGT00940000153902.a	ENSGT00940000155638	ENSGT00950000182917.b	ENSGT00390000000444	ENSGT00940000155295	ENSGT01100000266288	ENSGT00390000017571	ENSGT00940000163206.b	ENSGT00940000159287	ENSGT00940000156352	ENSGT00940000160354	ENSGT00390000011620.a.a.a ##22	ENSGT00940000156453.a	ENSGT00510000049120	ENSGT00940000156037.a	ENSGT00940000160563	ENSGT00940000155981	ENSGT01030000234624.a	ENSGT01030000234624.b.a.b	ENSGT01030000234624.b.a.a	ENSGT00940000153229.A.a.b	ENSGT00940000158138	ENSGT01100000263524.B.b.b	ENSGT00940000162714	ENSGT00390000000568	ENSGT00950000182909.b.a.b	ENSGT00950000182909.b.a.a
Three-toed box turtle	MODERN SPECIES	24	RIOK3 (ENSTMTG00000020778)	RMC1 (ENSTMTG00000020785)	NPC1 (ENSTMTG00000020810)	ANKRD29 (ENSTMTG00000020834)	ENSTMTG00000020852	ENSTMTG00000020894	TTC39C (ENSTMTG00000021074)	CABYR (ENSTMTG00000021089)	OSBPL1A (ENSTMTG00000021103)	ENSTMTG00000021114	IMPACT (ENSTMTG00000021118)	ENSTMTG00000021133	ZNF521 (ENSTMTG00000021164)	SS18 (ENSTMTG00000021185)	PSMA8 (ENSTMTG00000021218)	TAF4B (ENSTMTG00000021248) ##22	KCTD1 (ENSTMTG00000021272)	AQP4 (ENSTMTG00000021277)	CHST9 (ENSTMTG00000021285)	CDH2 (ENSTMTG00000021321)	ENSTMTG00000021472	ENSTMTG00000021477	ENSTMTG00000021484	ENSTMTG00000021487	DSG2 (ENSTMTG00000021494)	ENSTMTG00000021504	TTR (ENSTMTG00000021508)	B4GALT6 (ENSTMTG00000003890)	ENSTMTG00000003904	TRAPPC8 (ENSTMTG00000003965)	RNF138 (ENSTMTG00000004246)
painted turtle	MODERN SPECIES	706															PSMA8 (ENSCPBG00000021090)	TAF4B (ENSCPBG00000021084) ##22	KCTD1 (ENSCPBG00000021082)	ENSCPBG00000021080	AQP4 (ENSCPBG00000021077)	CHST9 (ENSCPBG00000021075)	CDH2 (ENSCPBG00000021062)	ENSCPBG00000021056	ENSCPBG00000021050	ENSCPBG00000021045	ENSCPBG00000021041	TTR (ENSCPBG00000021030)	B4GALT6 (ENSCPBG00000021024)	ENSCPBG00000021020	ENSCPBG00000021018	TRAPPC8 (ENSCPBG00000021007)	RNF125 (ENSCPBG00000021003)
Testudinidae	ANCESTRAL SPECIES	4	ENSGT00940000164586.f	ENSGT00940000157008	ENSGT00390000009127	ENSGT00940000156182	ENSGT00940000153902.a	ENSGT00940000155638	ENSGT00950000182917.b	ENSGT00390000000444	ENSGT00940000155295	ENSGT00390000017571	ENSGT00940000163206.b	ENSGT00940000158492.x	ENSGT00940000159287	ENSGT00940000156352	ENSGT00940000160354	ENSGT00390000011620.a.a.a ##22	ENSGT00940000156453.a	ENSGT00940000156037.a	ENSGT00940000160563	ENSGT00940000155981	ENSGT01000000220486	ENSGT01030000234624.a	ENSGT01030000234624.b.a.b	ENSGT01030000234624.b.a.a	ENSGT00940000153229.A.a.b	ENSGT00940000158138	ENSGT00940000162714	ENSGT00390000000568	ENSGT00950000182909.b.a.b	ENSGT00950000182909.b.a.a	ENSGT00950000183111.b.a
Abingdon island giant tortoise	MODERN SPECIES	2073					TTC39C (ENSCABG00000002992)	CABYR (ENSCABG00000002990)	OSBPL1A (ENSCABG00000002835)	ENSCABG00000002829	ENSCABG00000002827	IMPACT (ENSCABG00000002825)	ENSCABG00000002803	ENSCABG00000002800	ZNF521 (ENSCABG00000002798)	SS18 (ENSCABG00000002796)	PSMA8 (ENSCABG00000002724)	TAF4B (ENSCABG00000002710) ##22	KCTD1 (ENSCABG00000002706)	AQP4 (ENSCABG00000002673)	CHST9 (ENSCABG00000002672)	CDH2 (ENSCABG00000002667)	ENSCABG00000002665	ENSCABG00000002664
Goode s thornscrub tortoise	MODERN SPECIES	11	ENSGEVG00005004910	RIOK3 (ENSGEVG00005004956)	RMC1 (ENSGEVG00005004985)	NPC1 (ENSGEVG00005005091)	ANKRD29 (ENSGEVG00005005172)	LAMA3 (ENSGEVG00005005489)	TTC39C (ENSGEVG00005006326)	ENSGEVG00005006379	ENSGEVG00005006400	OSBPL1A (ENSGEVG00005006440)	IMPACT (ENSGEVG00005006510)	ENSGEVG00005006529	ZNF521 (ENSGEVG00005006578)	SS18 (ENSGEVG00005006624)	PSMA8 (ENSGEVG00005006672)	TAF4B (ENSGEVG00005006771) ##22	KCTD1 (ENSGEVG00005007068)	AQP4 (ENSGEVG00005007101)	CHST9 (ENSGEVG00005007125)	CDH2 (ENSGEVG00005007155)	ENSGEVG00005007245	ENSGEVG00005007482	ENSGEVG00005008796	DSG2 (ENSGEVG00005008948)	ENSGEVG00005009129	TTR (ENSGEVG00005009167)	B4GALT6 (ENSGEVG00005009239)	ENSGEVG00005009392	TRAPPC8 (ENSGEVG00005009486)	RNF125 (ENSGEVG00005009755)	RNF138 (ENSGEVG00005009812)
Chinese turtle	MODERN SPECIES	1358										OSBPL1A (ENSPSIG00000002416)	IMPACT (ENSPSIG00000002499)	ENSPSIG00000002516	ZNF521 (ENSPSIG00000002538)	SS18 (ENSPSIG00000002550)	PSMA8 (ENSPSIG00000002603)	TAF4B (ENSPSIG00000002612) ##22	KCTD1 (ENSPSIG00000002625)	AQP4 (ENSPSIG00000002629)	CHST9 (ENSPSIG00000002647)	CDH2 (ENSPSIG00000002658)	ENSPSIG00000002716
Lepidosauria	ANCESTRAL SPECIES	2	ENSGT00940000160814	ENSGT00530000063835.b ##11	ENSGT00400000022086.a ##12	ENSGT00510000048348	ENSGT00940000157008	ENSGT00390000009127	ENSGT00940000156182	ENSGT00940000153902.a	ENSGT00940000155638	ENSGT00950000182917.b	ENSGT00390000000444	ENSGT00940000155295	ENSGT00390000017571	ENSGT00940000159287	ENSGT00940000156352	ENSGT00390000011620.a.a.a ##22	ENSGT00940000156453.a	ENSGT00940000156037.a	ENSGT00940000160563	ENSGT00940000155981	ENSGT01030000234624.a	ENSGT01030000234624.b.a.b	ENSGT01030000234624.b.a.a	ENSGT00940000153229.A.a.b	ENSGT00940000158138	ENSGT01100000263524.B.b.b	ENSGT00940000162714	ENSGT00390000000568	ENSGT00950000182909.b.a.b	ENSGT00950000182909.b.a.a	ENSGT00950000183111.b.a
Episquamata	ANCESTRAL SPECIES	1	ENSGT00940000160814	ENSGT00530000063835.b ##11	ENSGT00400000022086.a ##12	ENSGT00510000048348	ENSGT00940000157008	ENSGT00390000009127	ENSGT00940000156182	ENSGT00940000153902.a	ENSGT00940000155638	ENSGT00950000182917.b	ENSGT00390000000444	ENSGT00940000155295	ENSGT00390000017571	ENSGT00940000159287	ENSGT00940000156352	ENSGT00390000011620.a.a.a ##22	ENSGT00940000156453.a	ENSGT00940000156037.a	ENSGT00940000160563	ENSGT00940000155981	ENSGT01030000234624.a.e	ENSGT01030000234624.a.f	ENSGT01030000234624.b.a.b	ENSGT01030000234624.b.a.a	ENSGT00940000153229.A.a.b	ENSGT00940000158138	ENSGT01100000263524.B.b.b	ENSGT00940000162714	ENSGT00390000000568	ENSGT00950000182909.b.a.b	ENSGT00950000182909.b.a.a
Toxicofera	ANCESTRAL SPECIES	8	ENSGT00940000160814	ENSGT00530000063835.b ##11	ENSGT00400000022086.a ##12	ENSGT00510000048348	ENSGT00940000157008	ENSGT00390000009127	ENSGT00940000156182	ENSGT00940000153902.a	ENSGT00940000155638	ENSGT00950000182917.b	ENSGT00390000000444	ENSGT00940000155295	ENSGT00390000017571	ENSGT00940000159287	ENSGT00940000156352	ENSGT00390000011620.a.a.a ##22	ENSGT00940000156453.a	ENSGT00940000156037.a	ENSGT00940000160563	ENSGT00940000155981	ENSGT01030000234624.a.e	ENSGT01030000234624.a.f	ENSGT01030000234624.b.a.b	ENSGT01030000234624.b.a.a	ENSGT00940000153229.A.a.b	ENSGT00940000158138	ENSGT00940000162714	ENSGT00390000000568	ENSGT00950000182909.b.a.b	ENSGT00950000182909.b.a.a	ENSGT00950000183111.b.a
Elapidae	ANCESTRAL SPECIES	8	ENSGT00940000160814	ENSGT00530000063835.b.tb.a ##11	ENSGT00400000022086.a ##12	ENSGT00510000048348	ENSGT00940000157008	ENSGT00390000009127	ENSGT00940000156182	ENSGT00940000153902.a	ENSGT00940000155638	ENSGT00950000182917.b	ENSGT00390000000444	ENSGT00940000155295	ENSGT00390000017571	ENSGT00940000159287	ENSGT00940000156352	ENSGT00390000011620.a.a.a ##22	ENSGT00940000156453.a	ENSGT00940000156037.a	ENSGT00940000160563	ENSGT00940000155981	ENSGT01030000234624.a.e	ENSGT01030000234624.a.f	ENSGT01030000234624.b.a.b	ENSGT01030000234624.b.a.a	ENSGT00940000153229.A.a.b	ENSGT00940000158138	ENSGT00940000162714	ENSGT00390000000568	ENSGT00950000182909.b.a.b	ENSGT00950000182909.b.a.a	ENSGT00530000063834.e.a
Indian cobra	MODERN SPECIES	2	GATA6 (ENSNNAG00000008083)	RBBP8 (ENSNNAG00000008109) ##11	CABLES1 (ENSNNAG00000008205) ##12	TMEM241 (ENSNNAG00000008294)	RIOK3 (ENSNNAG00000008388)	RMC1 (ENSNNAG00000008454)	NPC1 (ENSNNAG00000008894)	ANKRD29 (ENSNNAG00000009076)	LAMA3 (ENSNNAG00000009401)	TTC39C (ENSNNAG00000014129)	ENSNNAG00000014202	OSBPL1A (ENSNNAG00000014229)	IMPACT (ENSNNAG00000014349)	ZNF521 (ENSNNAG00000014371)	SS18 (ENSNNAG00000014426)	TAF4B (ENSNNAG00000014494) ##22	KCTD1 (ENSNNAG00000014547)	AQP4 (ENSNNAG00000014566)	CHST9 (ENSNNAG00000014585)	CDH2 (ENSNNAG00000014600)	ENSNNAG00000014656	ENSNNAG00000014740	ENSNNAG00000014783	ENSNNAG00000014805	DSG2 (ENSNNAG00000014820)	TTR (ENSNNAG00000014857)	B4GALT6 (ENSNNAG00000014898)	ENSNNAG00000015038	TRAPPC8 (ENSNNAG00000015059)	RNF125 (ENSNNAG00000015154)	RNF138 (ENSNNAG00000015165)
Elapidae_a	ANCESTRAL SPECIES	14	ENSGT00940000160814	ENSGT00530000063835.b.tb.a ##11	ENSGT00400000022086.a ##12	ENSGT00510000048348	ENSGT00940000157008	ENSGT00390000009127	ENSGT00940000156182	ENSGT00940000153902.a	ENSGT00940000155638	ENSGT00950000182917.b	ENSGT00390000000444	ENSGT00940000155295	ENSGT00390000017571	ENSGT00940000159287	ENSGT00940000156352	ENSGT00390000011620.a.a.a ##22	ENSGT00940000156453.a	ENSGT00940000156037.a	ENSGT00940000160563	ENSGT00940000155981	ENSGT01030000234624.a.e	ENSGT01030000234624.a.f	ENSGT01030000234624.b.a.b	ENSGT01030000234624.b.a.a	ENSGT00940000153229.A.a.b	ENSGT00940000158138	ENSGT00940000162714	ENSGT00390000000568	ENSGT00950000182909.b.a.b	ENSGT00950000182909.b.a.a	ENSGT00530000063834.e.a
Acanthophiinae	ANCESTRAL SPECIES	16	ENSGT00940000160814	ENSGT00530000063835.b.tb.a ##11	ENSGT00400000022086.a ##12	ENSGT00510000048348	ENSGT00940000157008	ENSGT00390000009127	ENSGT00940000156182	ENSGT00940000153902.a	ENSGT00940000155638	ENSGT00950000182917.b	ENSGT00390000000444	ENSGT00940000155295	ENSGT00390000017571	ENSGT00940000159287	ENSGT00940000156352	ENSGT00390000011620.a.a.a ##22	ENSGT00940000156453.a	ENSGT00940000156037.a	ENSGT00940000160563	ENSGT00940000155981	ENSGT01030000234624.a.e	ENSGT01030000234624.a.f	ENSGT01030000234624.b.a.b	ENSGT01030000234624.b.a.a	ENSGT00940000153229.A.a.b	ENSGT00940000158138	ENSGT00940000162714	ENSGT00390000000568	ENSGT00950000182909.b.a.b	ENSGT00950000182909.b.a.a	ENSGT00530000063834.e.a
Eastern brown snake	MODERN SPECIES	11	CABLES1 (ENSPTXG00000005638) ##12	TMEM241 (ENSPTXG00000006075)	RIOK3 (ENSPTXG00000006074)	RMC1 (ENSPTXG00000006072)	NPC1 (ENSPTXG00000005156)	ANKRD29 (ENSPTXG00000005146)	ENSPTXG00000005143	ENSPTXG00000005137	TTC39C (ENSPTXG00000005135)	ENSPTXG00000005134	OSBPL1A (ENSPTXG00000002585)	IMPACT (ENSPTXG00000002520)	ENSPTXG00000002516	ENSPTXG00000002512	SS18 (ENSPTXG00000002503)	TAF4B (ENSPTXG00000002485) ##22	KCTD1 (ENSPTXG00000002483)	AQP4 (ENSPTXG00000002480)	CHST9 (ENSPTXG00000002478)	CDH2 (ENSPTXG00000002473)	ENSPTXG00000002470	ENSPTXG00000002463	ENSPTXG00000002461	ENSPTXG00000002459	DSG2 (ENSPTXG00000002458)	TTR (ENSPTXG00000002456)	B4GALT6 (ENSPTXG00000002450)	ENSPTXG00000002445	TRAPPC8 (ENSPTXG00000002439)	RNF125 (ENSPTXG00000002437)	RNF138 (ENSPTXG00000002436)
Mainland tiger snake	MODERN SPECIES	32	ENSNSUG00000019722 ##11	CABLES1 (ENSNSUG00000019723) ##12	RIOK3 (ENSNSUG00000019726)	RMC1 (ENSNSUG00000019727)	NPC1 (ENSNSUG00000019739)	ANKRD29 (ENSNSUG00000019866)	ENSNSUG00000019867	ENSNSUG00000019868	TTC39C (ENSNSUG00000019869)	ENSNSUG00000019870	ENSNSUG00000019871	OSBPL1A (ENSNSUG00000019877)	IMPACT (ENSNSUG00000019957)	ZNF521 (ENSNSUG00000019958)	SS18 (ENSNSUG00000019959)	TAF4B (ENSNSUG00000019960) ##22	KCTD1 (ENSNSUG00000019964)	AQP4 (ENSNSUG00000019966)	CHST9 (ENSNSUG00000019968)	CDH2 (ENSNSUG00000019972)	ENSNSUG00000019976	ENSNSUG00000019977	ENSNSUG00000019979	ENSNSUG00000019980	ENSNSUG00000019982	ENSNSUG00000019985	ENSNSUG00000019987	TTR (ENSNSUG00000019991)	B4GALT6 (ENSNSUG00000020003)	ENSNSUG00000020015	TRAPPC8 (ENSNSUG00000020037)
Blue-lipped sea krait	MODERN SPECIES	1242																ENSLLTG00000010729 ##22
Lizard	MODERN SPECIES	3	RBBP8 (ENSACAG00000007768) ##11	ENSACAG00000040717	CABLES1 (ENSACAG00000000154) ##12	TMEM241 (ENSACAG00000028555)	RIOK3 (ENSACAG00000000159)	RMC1 (ENSACAG00000000175)	NPC1 (ENSACAG00000000201)	ANKRD29 (ENSACAG00000044259)	LAMA3 (ENSACAG00000000304)	TTC39C (ENSACAG00000001210)	ENSACAG00000034791	OSBPL1A (ENSACAG00000001327)	IMPACT (ENSACAG00000001663)	ZNF521 (ENSACAG00000001799)	SS18 (ENSACAG00000001853)	TAF4B (ENSACAG00000002056) ##22	KCTD1 (ENSACAG00000037445)	AQP4 (ENSACAG00000002159)	CHST9 (ENSACAG00000002223)	CDH2 (ENSACAG00000010838)	ENSACAG00000038800	ENSACAG00000041775	HNF4G (ENSACAG00000013245)	ENSACAG00000035528	CRISPLD1 (ENSACAG00000013173)	ENSACAG00000041357	PI15 (ENSACAG00000041134)	GDAP1 (ENSACAG00000040293)	ENSACAG00000037438	JPH1 (ENSACAG00000013059)	ENSACAG00000040149
Laterata	ANCESTRAL SPECIES	5	ENSGT00940000160814	ENSGT00530000063835.b ##11	ENSGT00400000022086.a ##12	ENSGT00510000048348	ENSGT00940000157008	ENSGT00390000009127	ENSGT00940000156182	ENSGT00940000153902.a	ENSGT00940000155638	ENSGT00950000182917.b	ENSGT00390000000444	ENSGT00940000155295	ENSGT00390000017571	ENSGT00940000159287	ENSGT00940000156352	ENSGT00390000011620.a.a.a ##22	ENSGT00940000156453.a	ENSGT00940000156037.a	ENSGT00940000160563	ENSGT00940000155981	ENSGT01030000234624.a.e	ENSGT01030000234624.a.f	ENSGT01030000234624.b.a.b	ENSGT01030000234624.b.a.a	ENSGT00940000153229.A.a.b	ENSGT00940000158138	ENSGT01100000263524.B.b.b	ENSGT00940000162714	ENSGT00390000000568	ENSGT00950000182909.b.a.b	ENSGT00950000182909.b.a.a
Common wall lizard	MODERN SPECIES	15	RBBP8 (ENSPMRG00000005295) ##11	CABLES1 (ENSPMRG00000005285) ##12	TMEM241 (ENSPMRG00000005271)	RIOK3 (ENSPMRG00000005262)	RMC1 (ENSPMRG00000005247)	NPC1 (ENSPMRG00000006953)	ANKRD29 (ENSPMRG00000006924)	LAMA3 (ENSPMRG00000006100)	TTC39C (ENSPMRG00000005770)	ENSPMRG00000005743	OSBPL1A (ENSPMRG00000005702)	IMPACT (ENSPMRG00000005677)	ZNF521 (ENSPMRG00000005662)	SS18 (ENSPMRG00000005630)	ENSPMRG00000005615	TAF4B (ENSPMRG00000005603) ##22	ENSPMRG00000005595	KCTD1 (ENSPMRG00000005589)	ENSPMRG00000005586	AQP4 (ENSPMRG00000005572)	CHST9 (ENSPMRG00000005534)	CDH2 (ENSPMRG00000005502)	ENSPMRG00000005491	ENSPMRG00000005467	ENSPMRG00000005404	ENSPMRG00000005372	DSG2 (ENSPMRG00000005350)	TTR (ENSPMRG00000005339)	B4GALT6 (ENSPMRG00000005192)	ENSPMRG00000005160	ENSPMRG00000005150
Argentine black and white tegu	MODERN SPECIES	4	RBBP8 (ENSSMRG00000012281) ##11	CABLES1 (ENSSMRG00000012280) ##12	TMEM241 (ENSSMRG00000012279)	RIOK3 (ENSSMRG00000012259)	RMC1 (ENSSMRG00000012256)	NPC1 (ENSSMRG00000012250)	ANKRD29 (ENSSMRG00000012247)	ENSSMRG00000012246	ENSSMRG00000012150	TTC39C (ENSSMRG00000012148)	ENSSMRG00000012144	OSBPL1A (ENSSMRG00000012088)	IMPACT (ENSSMRG00000012086)	ZNF521 (ENSSMRG00000011955)	SS18 (ENSSMRG00000011862)	TAF4B (ENSSMRG00000011842) ##22	KCTD1 (ENSSMRG00000011841)	AQP4 (ENSSMRG00000011810)	CHST9 (ENSSMRG00000011802)	CDH2 (ENSSMRG00000011749)	ENSSMRG00000011727	ENSSMRG00000011648	ENSSMRG00000011610	ENSSMRG00000011527	ENSSMRG00000011523	ENSSMRG00000011521	ENSSMRG00000011517	ENSSMRG00000011515	TTR (ENSSMRG00000011513)	ENSSMRG00000011512	ENSSMRG00000011510
tuatara	MODERN SPECIES	273															SS18 (ENSSPUG00000010505)	TAF4B (ENSSPUG00000010416) ##22	KCTD1 (ENSSPUG00000010358)	AQP4 (ENSSPUG00000010331)	CHST9 (ENSSPUG00000010316)	CDH2 (ENSSPUG00000010288)
Anura	ANCESTRAL SPECIES	1	ENSGT00510000048348	ENSGT00940000157008	ENSGT00390000009127	ENSGT00940000156182	ENSGT00940000153902.a	ENSGT00940000155638	ENSGT00950000182917.b	ENSGT00940000155295	ENSGT00390000017571	ENSGT00940000163206.b.s.a.a	ENSGT00930000153033	ENSGT00940000167019	ENSGT00940000163206.b.s.b	ENSGT00940000159287	ENSGT00940000156352	ENSGT00390000011620.a.a.a ##22	ENSGT00940000156453.a	ENSGT00940000156037.a.c.a	ENSGT00940000155981	ENSGT01030000234624.a	ENSGT01030000234624.b.a.b	ENSGT01030000234624.b.a.a	ENSGT01050000245154	ENSGT00940000158138	ENSGT01100000263524.B.b.b	ENSGT00390000000568	ENSGT00950000182909.b.a.b	ENSGT00950000182909.b.a.a	ENSGT00950000183111.b.a.e	ENSGT00530000063834.e.a	ENSGT00940000166646
Frog	MODERN SPECIES	6	ENSXETG00000039885	hrh4.d1 (ENSXETG00000038347)	ENSXETG00000049465	ENSXETG00000036840	ENSXETG00000037265	ENSXETG00000034924	hrh4.f5 (ENSXETG00000042386)	ENSXETG00000048779	ENSXETG00000039739	ENSXETG00000037091	ENSXETG00000040284	ENSXETG00000037773	znf521 (ENSXETG00000036616)	ss18 (ENSXETG00000006922)	ENSXETG00000049166	taf4b (ENSXETG00000032722) ##22	kctd1 (ENSXETG00000006930)	aqp4 (ENSXETG00000033655)	cdh2 (ENSXETG00000006932)	XB5854344 [provisional:nufip2] (ENSXETG00000004721)	dsg1 (ENSXETG00000031232)	ENSXETG00000048662	dsg2 (ENSXETG00000034243)	ttr (ENSXETG00000004725)	ENSXETG00000049004	b4galt6 (ENSXETG00000004726)	ENSXETG00000049479	ENSXETG00000004729	trappc8 (ENSXETG00000004734)	rnf125 (ENSXETG00000034351)	rnf138 (ENSXETG00000004739)
Leishan spiny toad	MODERN SPECIES	8	ENSLLEG00000010847	ENSLLEG00000010705	ENSLLEG00000010685	ENSLLEG00000010658	ENSLLEG00000010249	ENSLLEG00000009345	ENSLLEG00000009040	ENSLLEG00000008975	ENSLLEG00000008906	ENSLLEG00000008746	ENSLLEG00000008574	ZNF521 (ENSLLEG00000008181)	ENSLLEG00000008138	ENSLLEG00000008121	SS18 (ENSLLEG00000007953)	TAF4B (ENSLLEG00000007843) ##22	KCTD1 (ENSLLEG00000007778)	ENSLLEG00000007724	ENSLLEG00000007693	ENSLLEG00000007685	CDH2 (ENSLLEG00000007406)	ENSLLEG00000007353	ENSLLEG00000007244	ENSLLEG00000007077	ENSLLEG00000007041	DSG2 (ENSLLEG00000006964)	ENSLLEG00000006768	B4GALT6 (ENSLLEG00000006713)	ENSLLEG00000006679	TRAPPC8 (ENSLLEG00000006292)	ENSLLEG00000006244
Coelacanth	MODERN SPECIES	1419														SS18 (ENSLACG00000011732)	PSMA8 (ENSLACG00000011602)	TAF4B (ENSLACG00000010597) ##22	KCTD1 (ENSLACG00000008773)	AQP4 (ENSLACG00000006947)	CHST9 (ENSLACG00000006591)
Actinopterygii	ANCESTRAL SPECIES	66	ENSGT00940000157008	ENSGT00390000009127	ENSGT00940000156182	ENSGT00940000153902.a	ENSGT00940000153321.b.a	ENSGT00940000155638	ENSGT00950000182917.b	ENSGT00390000000444	ENSGT00990000204641	ENSGT00940000155295	ENSGT00940000167019	ENSGT00390000017571	ENSGT00940000159287	ENSGT00940000156352	ENSGT00940000160354	ENSGT00390000011620.a.a.a ##22	ENSGT00940000156453.a	ENSGT00940000156037.a	ENSGT00940000160563	ENSGT00940000155981	ENSGT01030000234624.a	ENSGT01030000234624.b.b	ENSGT00940000153229.A.a.b	ENSGT00940000158138	ENSGT00940000157210	ENSGT01100000263524.B.b.a	ENSGT00530000063956.a	ENSGT00950000182909.b.b.a	ENSGT00940000160486	ENSGT00940000156142	ENSGT00940000158405
Neopterygii	ANCESTRAL SPECIES	101	ENSGT00390000009127	ENSGT00940000156182	ENSGT00940000153902.a	ENSGT00940000153321.b.a	ENSGT00940000155638	ENSGT00950000182917.b	ENSGT00390000000444	ENSGT00990000204641	ENSGT00970000194032	ENSGT00940000155295	ENSGT00940000167019	ENSGT00390000017571	ENSGT00940000159287	ENSGT00940000156352	ENSGT00940000160354	ENSGT00390000011620.a.a.a ##22	ENSGT00940000156453.a	ENSGT00940000156037.a	ENSGT00940000155981	ENSGT01030000234624.a	ENSGT01030000234624.b.b	ENSGT00940000153229.A.a.b	ENSGT01100000263524.B.b.b	ENSGT00390000000568	ENSGT00950000182909.b.a.a.cb	ENSGT00950000182909.b.a.a.db	ENSGT00950000183111.b.a
Osteoglossocephalai	ANCESTRAL SPECIES	98	ENSGT00990000204641	ENSGT00940000155295.y	ENSGT00940000167019	ENSGT00390000017571	ENSGT00940000162118	ENSGT00940000163206.b.a.a	ENSGT00940000163206.b.b	ENSGT00940000155638.wb.a	ENSGT00950000182917.b.a.a	ENSGT00970000194032	ENSGT00940000155295.z	ENSGT00940000163206.b.a.b	ENSGT00940000159287	ENSGT00940000156352	ENSGT00940000160354	ENSGT00390000011620.a.a.a ##22	ENSGT00940000156453.a	ENSGT00940000156037.a.f	ENSGT00940000155981	ENSGT01030000234624.a	ENSGT01030000234624.b.b.c.b	ENSGT00940000153229.A.a.b	ENSGT00940000158019	ENSGT01100000263524.B.b.b	ENSGT00390000000568	ENSGT00950000182909.b.a.a.db	ENSGT00950000183111.b.a.b	ENSGT01030000234597.a.b.a.b	ENSGT00940000156618.c.a	ENSGT01050000244824.B	ENSGT00940000159860
Osteoglossiformes	ANCESTRAL SPECIES	119	ENSGT00390000020445	ENSGT00940000155281.o	ENSGT00940000158227	ENSGT00950000183019.f.a.c.a	ENSGT00390000002407.c.c	ENSGT01090000260003.a.b.b.a.a.b.a.a	ENSGT00940000153902.a	ENSGT00940000153321.b.a	ENSGT00950000182917.b.a.b	ENSGT00940000155295.y	ENSGT00390000017571	ENSGT00940000163206.b.b	ENSGT00940000159287.i	ENSGT00940000156352.d	ENSGT00940000160354	ENSGT00390000011620.a.a.a ##22	ENSGT00940000156453.a	ENSGT00940000156037.a.e	ENSGT00940000155981.e	ENSGT01030000234624.a.v	ENSGT01030000234624.b.b.d.b	ENSGT01030000234624.b.b.d.a.a	ENSGT00940000158019.l	ENSGT01100000263524.B.b.b	ENSGT00390000000568	ENSGT00950000183102.A.b.a	ENSGT00940000158137.c.a.c	ENSGT00390000009122	ENSGT00940000155842.s.b	ENSGT00940000156080.l	ENSGT00940000154872.B
P. kingsleyae	MODERN SPECIES	226	GALNT11 (ENSPKIG00000017665)	prkag2a (ENSPKIG00000017549)	ENSPKIG00000017491	bcl2a (ENSPKIG00000017475)	ENSPKIG00000017466	ankrd29 (ENSPKIG00000017446)	ENSPKIG00000017416	ttc39c (ENSPKIG00000017393)	OSBPL1A (ENSPKIG00000017293)	impact (ENSPKIG00000017235)	ENSPKIG00000017201	ENSPKIG00000017178	ZNF521 (ENSPKIG00000017121)	SS18 (ENSPKIG00000017040)	psma8 (ENSPKIG00000017000)	TAF4B (ENSPKIG00000016978) ##22	KCTD1 (ENSPKIG00000016947)	aqp4 (ENSPKIG00000016924)	cdh2 (ENSPKIG00000016865)
Asian bonytongue	MODERN SPECIES	10	actr3b (ENSSFOG00015009213)	XRCC2 (ENSSFOG00015009252)	KMT2C (ENSSFOG00015030733)	GALNT11 (ENSSFOG00015009344)	PRKAG2 (ENSSFOG00015009377)	cox4i1l (ENSSFOG00015033082)	bcl2a (ENSSFOG00015029290)	ankrd29 (ENSSFOG00015009434)	ENSSFOG00015009492	OSBPL1A (ENSSFOG00015009895)	impact (ENSSFOG00015028822)	ENSSFOG00015024307	ZNF521 (ENSSFOG00015010128)	SS18 (ENSSFOG00015010184)	psma8 (ENSSFOG00015010234)	TAF4B (ENSSFOG00015010259) ##22	KCTD1 (ENSSFOG00015025639)	aqp4 (ENSSFOG00015010438)	cdh2 (ENSSFOG00015030474)	ENSSFOG00015010975	ENSSFOG00015011027	ENSSFOG00015030217	ENSSFOG00015011178	B4GALT5 (ENSSFOG00015026026)	opn7a (ENSSFOG00015011229)	TRAPPC8 (ENSSFOG00015011261)	mcm3l (ENSSFOG00015011464)	si:ch211-191a24.4 (ENSSFOG00015011524)	PHLPP1 (ENSSFOG00015011540)	tbc1d7 (ENSSFOG00015013112)	PHACTR1 (ENSSFOG00015013145)
Clupeocephala	ANCESTRAL SPECIES	242																ENSGT00390000011620.a.a.a ##22	ENSGT01030000234624.b.b.c.a.b	ENSGT01030000234624.b.b.c.a.a	ENSGT00940000153229.A.a.b	ENSGT00940000158019	ENSGT00390000000568	ENSGT00950000182909.b.a.a.db	ENSGT00950000183111.b.a.b	ENSGT00950000183102.A.b.a	ENSGT00940000163886.A	ENSGT00940000156328.a.b	ENSGT00940000158092.o	ENSGT00940000157394.a	ENSGT00940000154872.B	ENSGT00940000156080.l	ENSGT00940000155842.s
Otomorpha	ANCESTRAL SPECIES	220	ENSGT00940000163886.A	ENSGT00950000183102.A.b.a	ENSGT00950000183111.b.a.b	ENSGT00950000182909.b.a.a.db	ENSGT00390000000568	ENSGT01100000263524.B.b.b	ENSGT00940000158019	ENSGT00940000153229.A.a.b	ENSGT01030000234624.b.b.c.a.a	ENSGT01030000234624.b.b.c.a.b	ENSGT01030000234624.a	ENSGT00940000155981.h	ENSGT00940000156037.a.e	ENSGT00510000049120	ENSGT00940000156453.b	ENSGT00390000011620.a.a.a ##22
Otophysi	ANCESTRAL SPECIES	12	ENSGT00940000163886.A	ENSGT00950000183102.A.b.a	ENSGT00950000183111.b.a.b	ENSGT00950000182909.b.a.a.db	ENSGT00390000000568	ENSGT01100000263524.B.b.b	ENSGT00940000158019	ENSGT00940000153229.A.a.b	ENSGT01030000234624.b.b.c.a.a	ENSGT01030000234624.b.b.c.a.b	ENSGT01030000234624.a	ENSGT00940000155981.h	ENSGT00940000156037.a.e	ENSGT00510000049120	ENSGT00940000156453.b	ENSGT00390000011620.a.a.a ##22	ENSGT00940000160354	ENSGT01100000263537.b.b.c.b.k.a	ENSGT00390000013955	ENSGT01030000234517.H.a	ENSGT00940000164834.b	ENSGT01030000234613.b.a.a.c.b	ENSGT00390000016478.c.a	ENSGT00940000160562	ENSGT00940000159097	ENSGT00390000016168.a	ENSGT01070000253766.C.o.a	ENSGT00940000157818	ENSGT00390000014037.c	ENSGT00450000040279	ENSGT00940000161092
Characiphysae	ANCESTRAL SPECIES	24	ENSGT00950000183111.b.a.b	ENSGT00950000182909.b.a.a.db	ENSGT00390000000568	ENSGT01100000263524.B.b.b	ENSGT00940000158019	ENSGT00940000153229.A.a.b	ENSGT01030000234624.b.b.c.a.a.t.b	ENSGT01030000234624.b.b.c.a.a.t.a	ENSGT01030000234624.b.b.c.a.a.s	ENSGT01030000234624.b.b.c.a.b	ENSGT01030000234624.a	ENSGT00940000155981.h.i	ENSGT00940000156037.a.e	ENSGT00940000156453.b	ENSGT00510000049120	ENSGT00390000011620.a.a.a ##22	ENSGT00940000160354	ENSGT01100000263537.b.b.c.b.k.a	ENSGT00390000013955	ENSGT01030000234517.H.a	ENSGT00940000164834.b	ENSGT01030000234613.b.a.a.c.b	ENSGT00390000016478.c.a	ENSGT00940000160562	ENSGT00940000159097	ENSGT00390000016168.a	ENSGT01070000253766.C.o.a	ENSGT00940000157818	ENSGT00390000014037.c	ENSGT00450000040279	ENSGT00940000161092
Characiphysae_b	ANCESTRAL SPECIES	23	ENSGT00940000153229.A.a.b	ENSGT01030000234624.b.b.c.a.a.t.b	ENSGT01030000234624.b.b.c.a.a.t.a	ENSGT01030000234624.b.b.c.a.a.s	ENSGT01030000234624.b.b.c.a.b	ENSGT01030000234624.a	ENSGT00550000075038.a	ENSGT00940000162478	ENSGT01030000234592.A.b.b.b.a	ENSGT00940000165400	ENSGT00940000179222	ENSGT00940000155981.h.i	ENSGT00940000156037.a.e	ENSGT00940000156453.b	ENSGT00510000049120	ENSGT00390000011620.a.a.a ##22	ENSGT00940000160354	ENSGT01100000263537.b.b.c.b.k.a	ENSGT00390000013955	ENSGT01030000234517.H.a	ENSGT00940000164834.b	ENSGT01030000234613.b.a.a.c.b	ENSGT00390000016478.c.a	ENSGT00940000160562	ENSGT00940000159097	ENSGT00390000016168.a	ENSGT01070000253766.C.o.a	ENSGT00940000157818	ENSGT00390000014037.c	ENSGT00450000040279	ENSGT00940000161092
Characoidei	ANCESTRAL SPECIES	21	ENSGT00950000183102.A.b.a	ENSGT00950000183111.b.a.b	ENSGT00950000182909.b.a.a.db	ENSGT00390000000568	ENSGT00940000158019	ENSGT00940000153229.A.a.b	ENSGT01030000234624.b.b.c.a.a.t.b	ENSGT01030000234624.b.b.c.a.a.t.a	ENSGT01030000234624.b.b.c.a.a.s	ENSGT01030000234624.b.b.c.a.b	ENSGT01030000234624.a	ENSGT00940000155981.h.i	ENSGT00940000156037.a.e	ENSGT00940000156453.b	ENSGT00510000049120	ENSGT00390000011620.a.a.a ##22	ENSGT00940000160354	ENSGT00940000167949	ENSGT00950000183136.a.b.c	ENSGT00390000013955	ENSGT01030000234517.H.a	ENSGT00940000164834.b	ENSGT01030000234613.b.a.a.c.b.a	ENSGT00390000016478.c.a	ENSGT00940000160562	ENSGT00940000159097	ENSGT00390000016168.a	ENSGT01070000253766.C.o.a	ENSGT00940000157818	ENSGT00390000014037.c	ENSGT00450000040279
Red-bellied piranha	MODERN SPECIES	13	ENSPNAG00000028337	TRAPPC8 (ENSPNAG00000028290)	opn7a (ENSPNAG00000028088)	b4galt6 (ENSPNAG00000028079)	ttr (ENSPNAG00000028049)	ENSPNAG00000028033	ENSPNAG00000005279	ENSPNAG00000027969	ENSPNAG00000027949	dsc2l (ENSPNAG00000027829)	si:dkey-5n18.1 (ENSPNAG00000027804)	cdh2 (ENSPNAG00000027771)	aqp4 (ENSPNAG00000027697)	ENSPNAG00000027690	ENSPNAG00000027661	ENSPNAG00000027636 ##22	ENSPNAG00000027567	psma8 (ENSPNAG00000027550)	ENSPNAG00000027496	ENSPNAG00000027468	ENSPNAG00000027434	ENSPNAG00000007096	ENSPNAG00000006212	vipas39 (ENSPNAG00000027327)
Mexicana tetra	MODERN SPECIES	18	slain2 (ENSAMXG00000002454)	anapc4 (ENSAMXG00000002444)	TRAPPC8 (ENSAMXG00000002438)	opn7a (ENSAMXG00000040803)	b4galt6 (ENSAMXG00000002432)	ttr (ENSAMXG00000002423)	ENSAMXG00000002421	ENSAMXG00000002407	ENSAMXG00000030767	ENSAMXG00000039417	dsc2l (ENSAMXG00000002361)	si:dkey-5n18.1 (ENSAMXG00000032780)	cdh2 (ENSAMXG00000040605)	aqp4 (ENSAMXG00000019647)	ENSAMXG00000032444	ENSAMXG00000019513 ##22	ENSAMXG00000030268	psma8 (ENSAMXG00000038711)	ENSAMXG00000035866	clic5b (ENSAMXG00000035157)	mark3b (ENSAMXG00000001388)	daam1b (ENSAMXG00000001378)	L3HYPDH (ENSAMXG00000032989)	nudt14 (ENSAMXG00000029131)	jag2b (ENSAMXG00000020545)	esr2a (ENSAMXG00000036234)	ENSAMXG00000029675	ENSAMXG00000038470	btbd6b (ENSAMXG00000036054)	brf1b (ENSAMXG00000020489)	xrcc3 (ENSAMXG00000020479)
Channel catfish	MODERN SPECIES	17	si:ch211-191a24.4 (ENSIPUG00000014382)	mcm3l (ENSIPUG00000014393)	mep1b (ENSIPUG00000014431)	ENSIPUG00000014461	trappc8 (ENSIPUG00000014508)	B4galt6 (ENSIPUG00000014871)	TTR (ENSIPUG00000014900)	ENSIPUG00000014914	ENSIPUG00000014933	dsc2l (ENSIPUG00000014955)	si:dkey-5n18.1 (ENSIPUG00000014981)	cdh2 (ENSIPUG00000014994)	aqp4 (ENSIPUG00000015039)	ENSIPUG00000015055	ENSIPUG00000015072	ENSIPUG00000015081 ##22	psma8 (ENSIPUG00000015106)	ENSIPUG00000015145	ENSIPUG00000015160	vipas39 (ENSIPUG00000015175)	Cdc42bpb (ENSIPUG00000015388)	ENSIPUG00000015881	si:dkeyp-72h1.1 (ENSIPUG00000015915)	tnfaip2a (ENSIPUG00000015920)	MPEG1 (ENSIPUG00000015946)	EIF5 (ENSIPUG00000015961)	Enpp5 (ENSIPUG00000016016)	fam167ab (ENSIPUG00000016026)	ccm2 (ENSIPUG00000016046)	xkr6b (ENSIPUG00000016093)	mtmr9 (ENSIPUG00000016118)
Cyprinoidei	ANCESTRAL SPECIES	11	ENSGT00940000163886.A.a.a	ENSGT00950000183102.A.b.a	ENSGT00950000183111.b.a.b	ENSGT00950000182909.b.a.a.db	ENSGT00390000000568	ENSGT01100000263524.B.b.b	ENSGT00940000158019	ENSGT00940000153229.A.a.b	ENSGT01030000234624.b.b.c.a.a	ENSGT01030000234624.b.b.c.a.b	ENSGT01030000234624.a	ENSGT00940000155981.h	ENSGT00940000156037.a.e	ENSGT00510000049120	ENSGT00940000156453.b	ENSGT00390000011620.a.a.a ##22	ENSGT00940000160354	ENSGT00940000159287.n	ENSGT01100000263537.b.b.c.b.k.a	ENSGT00950000183136.a.b.c	ENSGT00390000013955	ENSGT01030000234517.H.a	ENSGT00940000164834.b	ENSGT01030000234613.b.a.a.c.b	ENSGT00390000016478.c.a	ENSGT00940000160562	ENSGT00940000159097	ENSGT00390000016168.a	ENSGT01070000253766.C.o.a	ENSGT00940000157818	ENSGT00390000014037.c
Cyprininae	DUPLICATION
Cyprininae	ANCESTRAL SPECIES	121			ENSGT00390000000568.i	ENSGT01100000263524.B.b.b.c	ENSGT00940000158019.f	ENSGT00940000153229.A.a.b.eb	ENSGT01030000234624.b.b.c.a.a.v	ENSGT01030000234624.b.b.c.a.a.u.b	ENSGT01030000234624.b.b.c.a.b.a	ENSGT01030000234624.a.h	ENSGT00940000162478.f	ENSGT00940000155981.h.g	ENSGT00940000156037.a.e.f	ENSGT00510000049120.h.a	ENSGT00940000156453.b.k	ENSGT00390000011620.a.a.a.e ##22	ENSGT00940000160354.l	ENSGT00940000159287.n.a	ENSGT01100000263537.b.b.c.b.k.a	ENSGT00390000013955.j	ENSGT01030000234517.H.a.s	ENSGT00940000164834.b	ENSGT01030000234613.b.a.a.c.b.d	ENSGT00390000016478.c.a.a.a	ENSGT00940000160562.f	ENSGT00940000159097.`b.b	ENSGT00390000016168.a.d	ENSGT01070000253766.C.o.a.a	ENSGT00940000157818.n	ENSGT00390000014037.c.b	ENSGT00450000040279.m
Cyprininae_a	ANCESTRAL SPECIES	177	ENSGT00950000183111.b.a.b.d.a.a.b	ENSGT00950000182909.b.a.a.db.b	ENSGT00390000000568.i	ENSGT01100000263524.B.b.b.c	ENSGT00940000158019.f	ENSGT00940000153229.A.a.b.eb	ENSGT01030000234624.b.b.c.a.a.v	ENSGT01030000234624.b.b.c.a.a.u.b	ENSGT01030000234624.b.b.c.a.b.a	ENSGT01030000234624.a.h	ENSGT00940000162478.f	ENSGT00940000155981.h.g	ENSGT00940000156037.a.e.f	ENSGT00510000049120.h.a	ENSGT00940000156453.b.k	ENSGT00390000011620.a.a.a.e ##22	ENSGT00940000160354.l	ENSGT00940000159287.n.a	ENSGT01100000263537.b.b.c.b.k.a	ENSGT00950000183136.a.b.c.b	ENSGT00390000013955.j	ENSGT01030000234517.H.a.s	ENSGT00940000164834.b.a	ENSGT01030000234613.b.a.a.c.b.d	ENSGT00390000016478.c.a.a.a	ENSGT00940000160562.f	ENSGT00940000159097.`b.b	ENSGT00390000016168.a.d	ENSGT01070000253766.C.o.a.a	ENSGT00940000157818.n	ENSGT00390000014037.c.b
Golden-line barbel	MODERN SPECIES	752												cdh2 (ENSSGRG00000044271)	aqp4 (ENSSGRG00000044247)	ENSSGRG00000044246	ENSSGRG00000044244	ENSSGRG00000044242 ##22	psma8 (ENSSGRG00000044241)	ENSSGRG00000044239	ENSSGRG00000044238	vipas39 (ENSSGRG00000044237)	cdc42bpb (ENSSGRG00000039180)	si:dkeyp-72h1.1 (ENSSGRG00000039056)	tnfaip2a (ENSSGRG00000039055)
Common carp reference	MODERN SPECIES	34	mep1ba (ENSCCRG00000039356)	ENSCCRG00000006373	TRAPPC8 (ENSCCRG00000002940)	opn7a (ENSCCRG00000003307)	ENSCCRG00000032875	ENSCCRG00000082495	ENSCCRG00000074173	ENSCCRG00000042769	ENSCCRG00000009789	ENSCCRG00000009604	si:dkey-5n18.1 (ENSCCRG00000079118)	cdh2 (ENSCCRG00000034364)	aqp4 (ENSCCRG00000002924)	ENSCCRG00000061882	ENSCCRG00000002939	ENSCCRG00000002963 ##22	ENSCCRG00000032398	psma8 (ENSCCRG00000002979)	ENSCCRG00000073961	gpr132b (ENSCCRG00000054663)	vipas39 (ENSCCRG00000079024)	cdc42bpb (ENSCCRG00000000493)	si:dkeyp-72h1.1 (ENSCCRG00000077521)	tnfaip2a (ENSCCRG00000021020)	eif5 (ENSCCRG00000061780)	enpp5 (ENSCCRG00000057622)	fam167ab (ENSCCRG00000081453)	ccm2 (ENSCCRG00000058429)	xkr6b (ENSCCRG00000012621)	mtmr9 (ENSCCRG00000043813)	tdh (ENSCCRG00000057503)
Goldfish	MODERN SPECIES	12	NEK1 (ENSCARG00000005642)	sh3rf1 (ENSCARG00000005697)	ENSCARG00000005723	ENSCARG00000005736	ENSCARG00000005750	ginm1 (ENSCARG00000005759)	ginm1 (ENSCARG00000005771)	ENSCARG00000005775	sh3rf1 (ENSCARG00000005807)	ENSCARG00000006024	jag2b (ENSCARG00000006065)	ENSCARG00000006377	aqp4 (ENSCARG00000006391)	ENSCARG00000006426	ENSCARG00000006458	ENSCARG00000006472 ##22	psma7 (ENSCARG00000006496)	ENSCARG00000006603	gpr132b (ENSCARG00000006616)	cdc42bpb (ENSCARG00000007029)	si:dkeyp-72h1.1 (ENSCARG00000013475)	tnfaip2a (ENSCARG00000013484)	ENSCARG00000013511	eif5 (ENSCARG00000013519)	enpp5 (ENSCARG00000013541)	fam167ab (ENSCARG00000013544)	ccm2 (ENSCARG00000013551)	xkr6b (ENSCARG00000013592)	mtmr9 (ENSCARG00000013598)	tdh (ENSCARG00000013607)	pinx1 (ENSCARG00000013617)
Cyprininae	ANCESTRAL SPECIES	318	ENSGT01050000244824.B.eb	ENSGT00950000183111.b.a.b.c	ENSGT00950000183111.b.a.b.d.a.a.b	ENSGT00950000182909.b.a.a.db	ENSGT00390000000568.j	ENSGT01100000263524.B.b.b.d	ENSGT01090000260029.a.b.b.b.a.a.a.b.c	ENSGT01050000245154	ENSGT01030000234624.b.b.c.a.a.u.a	ENSGT01030000234624.b.b.c.a.b.b	ENSGT01030000234624.a.g	ENSGT00940000155981.h.h	ENSGT00940000156037.a.e.e	ENSGT00510000049120.h.b	ENSGT00940000156453.b.l	ENSGT00390000011620.a.a.a.f ##22	ENSGT00940000160354.k	ENSGT00940000159287.n.b	ENSGT00950000183136.a.b.c	ENSGT00390000013955.i	ENSGT01030000234517.H.a.t
Cyprininae_a	ANCESTRAL SPECIES	34	ENSGT00950000183102.A.b.a.h	ENSGT01050000244824.B.eb	ENSGT00950000182909.b.a.a.db.a	ENSGT00390000000568.j	ENSGT01100000263524.B.b.b.d	ENSGT01090000260029.a.b.b.b.a.a.a.b.c	ENSGT00940000158019.e.b	ENSGT00940000153229.A.a.b.db	ENSGT01030000234624.b.b.c.a.a.u.a	ENSGT01030000234624.b.b.c.a.b.b	ENSGT01030000234624.a.g	ENSGT00940000155981.h.h	ENSGT00940000156037.a.e.e	ENSGT00510000049120.h.b	ENSGT00940000156453.b.l	ENSGT00390000011620.a.a.a.f ##22	ENSGT00940000160354.k	ENSGT00940000159287.n.b	ENSGT00950000183136.a.b.c.a	ENSGT00390000013955.i	ENSGT01030000234517.H.a.t	ENSGT00940000164834.b.b	ENSGT01030000234613.b.a.a.c.b.c	ENSGT00390000016478.c.a.a.b	ENSGT00390000016478.d	ENSGT00940000160562.e	ENSGT00940000159097.`b.a	ENSGT00390000016168.a.c	ENSGT01070000253766.C.o.a.b	ENSGT00940000157818.m	ENSGT00390000014037.c.a
Golden-line barbel	MODERN SPECIES	1688													aqp4 (ENSSGRG00000032352)	ENSSGRG00000032354	ENSSGRG00000032355	ENSSGRG00000032361 ##22	psma8 (ENSSGRG00000032371)	ENSSGRG00000032541	ENSSGRG00000032542	vipas39 (ENSSGRG00000032543)	cdc42bpb (ENSSGRG00000032564)
Zebrafish	MODERN SPECIES	12	gtf2a1 (ENSDARG00000011000)	ches1 (ENSDARG00000043553)	tmem30ab (ENSDARG00000043555)	kcnk13b (ENSDARG00000043557)	psmc1b (ENSDARG00000043561)	calm1b (ENSDARG00000034187)	ENSDARG00000018047	nfkbiaa (ENSDARG00000005481)	psma6b (ENSDARG00000013966)	ENSDARG00000062750	si:dkey-5n18.1 (ENSDARG00000043436)	ENSDARG00000101333	cdh2 (ENSDARG00000018693)	aqp4 (ENSDARG00000010565)	ENSDARG00000074056	ENSDARG00000075732 ##22	psma8 (ENSDARG00000010965)	ENSDARG00000086825	gpr132b (ENSDARG00000103540)	vipas39 (ENSDARG00000103690)	ENSDARG00000100732	cdc42bpb (ENSDARG00000019383)	si:dkeyp-72h1.1 (ENSDARG00000095347)	tnfaip2a (ENSDARG00000043416)	eif5 (ENSDARG00000003681)	enpp5 (ENSDARG00000070625)	fam167ab (ENSDARG00000023952)	ccm2 (ENSDARG00000013705)	xkr6b (ENSDARG00000043410)	mtmr9 (ENSDARG00000015860)	ENSDARG00000110494
Clupeiformes	ANCESTRAL SPECIES	92										ENSGT01030000234624.b.b.c.b	ENSGT01030000234624.a	ENSGT00940000155981.h	ENSGT00940000156037.a.e	ENSGT00510000049120	ENSGT00940000156453.b	ENSGT00390000011620.a.a.a ##22	ENSGT00940000155981.g	ENSGT00940000156037.a.f	ENSGT00940000156453.a	ENSGT00940000160354	ENSGT00940000156352	ENSGT00940000159287.m	ENSGT00940000163206.b.a.b	ENSGT00940000155295.z	ENSGT00970000194032	ENSGT01000000217386	ENSGT00990000204641.a	ENSGT00950000182917.b.a.a	ENSGT00940000155638.xb	ENSGT00940000157532.b	ENSGT00940000155450.c
Atlantic herring	MODERN SPECIES	1	mcm3l (ENSCHAG00000000597)	mep1ba (ENSCHAG00000000890)	ENSCHAG00000000954	TRAPPC8 (ENSCHAG00000001395)	ENSCHAG00000005560	b4galt6 (ENSCHAG00000005696)	ttr (ENSCHAG00000005935)	ENSCHAG00000005948	ENSCHAG00000006042	ENSCHAG00000006129	dsc2l (ENSCHAG00000006228)	cdh2 (ENSCHAG00000006482)	aqp4 (ENSCHAG00000008107)	ENSCHAG00000008111	ENSCHAG00000008119	ENSCHAG00000008130 ##22	psma8 (ENSCHAG00000008146)	ENSCHAG00000008234	ENSCHAG00000008307	ENSCHAG00000008340	ENSCHAG00000008390	XCR1 (ENSCHAG00000008459)	cwc15 (ENSCHAG00000008467)	FYCO1 (ENSCHAG00000008519)	ENSCHAG00000008642	ENSCHAG00000008757	rabggta (ENSCHAG00000008769)	tgm1l4 (ENSCHAG00000008831)	ENSCHAG00000009173	olfml2ba (ENSCHAG00000009203)	atf6 (ENSCHAG00000009211)
Euteleosteomorpha	ANCESTRAL SPECIES	304																ENSGT00390000011620.a.a.a ##22	ENSGT00940000156453.b	ENSGT00510000049120	ENSGT00940000156037.a.e	ENSGT00940000155981.h	ENSGT01030000234624.b.b.c.a.b	ENSGT01030000234624.b.b.c.a.a	ENSGT00940000153229.A.a.b	ENSGT00940000158019	ENSGT00390000000568	ENSGT00950000182909.b.a.a.db	ENSGT00950000183111.b.a.b
Protacanthopterygii	ANCESTRAL SPECIES	34	ENSGT00940000160138	ENSGT00940000163676	ENSGT00390000010047.g.b.b	ENSGT00660000095605.e	ENSGT00940000163762.a.b	ENSGT00390000011838	ENSGT00390000018402	ENSGT00390000005462	ENSGT00940000155060.C.a.b	ENSGT00940000154930.eb	ENSGT00940000157285.f	ENSGT00950000182993.B.a.d	ENSGT00940000156897	ENSGT00390000015908	ENSGT00940000160354.j	ENSGT00390000011620.a.a.a ##22	ENSGT00940000156453.b	ENSGT00510000049120	ENSGT00940000156037.a.e	ENSGT00940000155981.h	ENSGT01030000234624.b.b.c.a.b	ENSGT01030000234624.b.b.c.a.a	ENSGT00940000153229.A.a.b	ENSGT00940000158019	ENSGT00390000000568	ENSGT00950000182909.b.a.a.db	ENSGT00950000183111.b.a.b
Salmoninae	ANCESTRAL SPECIES	15	ENSGT01100000263497.E.b.r.b.c	ENSGT00950000182964.a.a.g.a.b	ENSGT00940000160138	ENSGT00940000163676.c	ENSGT00390000010047.g.b.b.b	ENSGT00940000163762.a.b.f	ENSGT00390000011838.o	ENSGT00390000018402.i.b	ENSGT00390000005462	ENSGT00940000155060.C.a.b.f	ENSGT00940000154930.eb.r	ENSGT00940000157285.f.c	ENSGT00950000182993.B.a.d.a	ENSGT00940000156897	ENSGT00940000160354.j.a.a	ENSGT00390000011620.a.a.a ##22	ENSGT00940000156453.b.a	ENSGT00510000049120.l	ENSGT00940000156037.a.e.d	ENSGT00940000155981.h.e	ENSGT01030000234624.a.t	ENSGT01030000234624.b.b.c.a.b	ENSGT01030000234624.b.b.c.a.a	ENSGT00940000153229.A.a.b	ENSGT00940000158019.g	ENSGT01100000263524.B.b.b.n	ENSGT00390000000568.n	ENSGT01050000245154	ENSGT00940000158019.h.a.a	ENSGT00390000000568.m	ENSGT00950000182909.b.a.a.db
Salmoninae_a	ANCESTRAL SPECIES	9	ENSGT01100000263497.E.b.r.b.c	ENSGT00950000182964.a.a.g.a.b	ENSGT00940000160138	ENSGT00940000163676.c	ENSGT00390000010047.g.b.b.b	ENSGT00940000163762.a.b.f	ENSGT00390000011838.o	ENSGT00390000018402.i.b	ENSGT00390000005462	ENSGT00940000155060.C.a.b.f	ENSGT00940000154930.eb.r	ENSGT00940000157285.f.c	ENSGT00950000182993.B.a.d.a	ENSGT00940000156897	ENSGT00940000160354.j.a.a	ENSGT00390000011620.a.a.a ##22	ENSGT00940000156453.b.a	ENSGT00510000049120.l	ENSGT00940000156037.a.e.d	ENSGT00940000155981.h.e	ENSGT01030000234624.a.t	ENSGT01030000234624.b.b.c.a.b	ENSGT01030000234624.b.b.c.a.a	ENSGT00940000153229.A.a.b	ENSGT00940000158019.g	ENSGT01100000263524.B.b.b.n	ENSGT00390000000568.n	ENSGT00950000182909.b.a.a.db.d	ENSGT00950000183111.b.a.b	ENSGT01050000244824.B.n	ENSGT00390000003161.d
Salmo	ANCESTRAL SPECIES	14	ENSGT01100000263497.E.b.r.b.c	ENSGT00950000182964.a.a.g.a.b	ENSGT00940000160138	ENSGT00940000163676.c	ENSGT00390000010047.g.b.b.b	ENSGT00940000163762.a.b.f	ENSGT00390000011838.o	ENSGT00390000018402.i.b	ENSGT00390000005462	ENSGT00940000155060.C.a.b.f	ENSGT00940000154930.eb.r	ENSGT00940000157285.f.c	ENSGT00950000182993.B.a.d.a	ENSGT00940000156897	ENSGT00940000160354.j.a.a	ENSGT00390000011620.a.a.a ##22	ENSGT00940000156453.b.a	ENSGT00940000156037.a.e.d	ENSGT00940000155981.h.e	ENSGT01030000234624.a.t	ENSGT01030000234624.b.b.c.a.b	ENSGT01030000234624.b.b.c.a.a	ENSGT00940000153229.A.a.b	ENSGT00940000158019.g	ENSGT01100000263524.B.b.b.n	ENSGT00390000000568.n	ENSGT00950000182909.b.a.a.db.d	ENSGT00950000183111.b.a.b	ENSGT01050000244824.B.n	ENSGT00390000003161.d	ENSGT00390000004681.a.a.g
Atlantic salmon	MODERN SPECIES	1	gadd45ab (ENSSSAG00000046763)	ENSSSAG00000116852	ENSSSAG00000092029	ENSSSAG00000046774	ENSSSAG00000046786	pbx1b (ENSSSAG00000046818)	med8 (ENSSSAG00000047902)	SZT2 (ENSSSAG00000047962)	hyi (ENSSSAG00000048518)	ptprf (ENSSSAG00000050060)	ENSSSAG00000078968	st3gal3a (ENSSSAG00000079100)	ENSSSAG00000118852	rad54l (ENSSSAG00000079143)	PSMA8 (ENSSSAG00000079190)	TAF4B (ENSSSAG00000079213) ##22	ENSSSAG00000079220	AQP4 (ENSSSAG00000079222)	cdh2 (ENSSSAG00000079280)	ENSSSAG00000079892	ENSSSAG00000079910	ENSSSAG00000079927	ttr (ENSSSAG00000118339)	b4galt6 (ENSSSAG00000079954)	opn7a (ENSSSAG00000080081)	ENSSSAG00000080164	ENSSSAG00000120970	mep1ba (ENSSSAG00000080805)	mcm3l (ENSSSAG00000080838)	ENSSSAG00000080932	ENSSSAG00000107918
River trout	MODERN SPECIES	14	ENSSTUG00000003655	ENSSTUG00000003784	glula (ENSSTUG00000003802)	ENSSTUG00000003895	pbx1b (ENSSTUG00000003938)	med8 (ENSSTUG00000004211)	SZT2 (ENSSTUG00000004277)	hyi (ENSSTUG00000004666)	ENSSTUG00000004724	ENSSTUG00000004733	ptprfa (ENSSTUG00000004807)	ENSSTUG00000006107	st3gal3a (ENSSTUG00000006906)	rad54l (ENSSTUG00000007046)	psma8 (ENSSTUG00000007376)	TAF4B (ENSSTUG00000007439) ##22	ENSSTUG00000007457	aqp4 (ENSSTUG00000007478)	cdh2 (ENSSTUG00000007612)	dsc2l (ENSSTUG00000010779)	ENSSTUG00000010842	ENSSTUG00000010844	ENSSTUG00000010898	ttr (ENSSTUG00000010910)	b4galt6 (ENSSTUG00000010928)	opn7a (ENSSTUG00000010998)	TRAPPC8 (ENSSTUG00000011036)	ENSSTUG00000011223	mep1ba (ENSSTUG00000011231)	mcm3l (ENSSTUG00000011263)	ARHGAP39 (ENSSTUG00000011571)
Oncorhynchus	ANCESTRAL SPECIES	8	ENSGT00550000075010.b	ENSGT01100000263497.E.b.r.b.c	ENSGT00950000182964.a.a.g.a.b	ENSGT00940000160138	ENSGT00940000163676.c	ENSGT00390000010047.g.b.b.b	ENSGT00940000163762.a.b.f	ENSGT00390000011838.o	ENSGT00390000005462.k	ENSGT00940000155060.C.a.b.f	ENSGT00940000154930.eb.r	ENSGT00940000157285.f.c	ENSGT00950000182993.B.a.d.a	ENSGT00940000156897	ENSGT00940000160354.j.a.a	ENSGT00390000011620.a.a.a ##22	ENSGT00940000156453.b.a	ENSGT00510000049120.l.b	ENSGT00940000156037.a.e.d	ENSGT00940000155981.h.e	ENSGT01030000234624.a.t	ENSGT01030000234624.b.b.c.a.b	ENSGT01030000234624.b.b.c.a.a	ENSGT00940000153229.A.a.b	ENSGT00940000158019.g	ENSGT00940000158019.h.a.b	ENSGT00390000000568.n	ENSGT00970000197999	ENSGT00950000183111.b.a.b	ENSGT01050000244824.B.n	ENSGT00390000003161.d
Oncorhynchus_a	ANCESTRAL SPECIES	14	ENSGT01000000222023	ENSGT01100000263497.E.b.r.b.c	ENSGT00950000182964.a.a.g.a.b	ENSGT00940000160138	ENSGT00940000163676.c	ENSGT00390000010047.g.b.b.b	ENSGT00940000163762.a.b.f	ENSGT00390000011838.o	ENSGT00390000005462.k	ENSGT00940000155060.C.a.b.f	ENSGT00940000154930.eb.r	ENSGT00940000157285.f.c	ENSGT00950000182993.B.a.d.a	ENSGT00940000156897	ENSGT00940000160354.j.a.a	ENSGT00390000011620.a.a.a ##22	ENSGT00940000156453.b.a	ENSGT00940000156037.a.e.d	ENSGT00940000155981.h.e	ENSGT01030000234624.a.t	ENSGT01030000234624.b.b.c.a.b	ENSGT01030000234624.b.b.c.a.a	ENSGT00940000153229.A.a.b	ENSGT00940000158019.h.a.b	ENSGT00390000000568.n	ENSGT00970000197999	ENSGT00950000183111.b.a.b	ENSGT01050000244824.B.n	ENSGT00390000004681.a.a.g	ENSGT00740000115898	ENSGT00950000183044.a.b
Coho salmon	MODERN SPECIES	4	GNG12 (ENSOKIG00005044946)	gadd45ab (ENSOKIG00005044931)	ENSOKIG00005044920	ZNF648 (ENSOKIG00005044896)	GLUL (ENSOKIG00005044865)	pbx1b (ENSOKIG00005044767)	med8 (ENSOKIG00005044736)	hyi (ENSOKIG00005044713)	ENSOKIG00005044705	ptprfa (ENSOKIG00005034160)	ENSOKIG00005033687	st3gal3a (ENSOKIG00005033651)	ENSOKIG00005033633	rad54l (ENSOKIG00005033381)	psma8 (ENSOKIG00005033272)	ENSOKIG00005033215 ##22	ENSOKIG00005033194	ENSOKIG00005033184	ENSOKIG00005033160	cdh2 (ENSOKIG00005030494)	ENSOKIG00005030210	ENSOKIG00005030102	ENSOKIG00005030011	ENSOKIG00005029986	b4galt6 (ENSOKIG00005029921)	TRAPPC8 (ENSOKIG00005029499)	ENSOKIG00005029429	mep1ba (ENSOKIG00005029383)	mcm3l (ENSOKIG00005030023)	GFUS (ENSOKIG00005029673)	bmb (ENSOKIG00005029642)
Chinook salmon	MODERN SPECIES	29	ENSOTSG00005035209	pthlha (ENSOTSG00005035210)	rpl18a (ENSOTSG00005035212)	ENSOTSG00005035214	med8 (ENSOTSG00005035215)	hyi (ENSOTSG00005035216)	ENSOTSG00005035223	ENSOTSG00005035261	smx5 (ENSOTSG00005035264)	ENSOTSG00005035265	ptprfa (ENSOTSG00005035285)	ENSOTSG00005036935	st3gal3a (ENSOTSG00005011424)	rad54l (ENSOTSG00005011427)	psma8 (ENSOTSG00005011680)	ENSOTSG00005011684 ##22	ENSOTSG00005011685	aqp4 (ENSOTSG00005011686)	cdh2 (ENSOTSG00005011689)	dsc2l (ENSOTSG00005011714)	ENSOTSG00005011717	ENSOTSG00005011720	ttr (ENSOTSG00005011725)	b4galt6 (ENSOTSG00005011729)	TRAPPC8 (ENSOTSG00005011769)	ENSOTSG00005011932	mep1ba (ENSOTSG00005011933)	mcm3l (ENSOTSG00005011938)	ENSOTSG00005013978	bmb (ENSOTSG00005013986)	pycr3 (ENSOTSG00005013987)
Rainbow trout	MODERN SPECIES	26	ENSOMYG00000015940	ENSOMYG00000015950	pbx1b (ENSOMYG00000015967)	med8 (ENSOMYG00000016002)	ENSOMYG00000064166	ENSOMYG00000056996	ENSOMYG00000066005	hyi (ENSOMYG00000019816)	ENSOMYG00000066133	ENSOMYG00000055917	ptprfa (ENSOMYG00000020475)	ENSOMYG00000031038	st3gal3a (ENSOMYG00000031744)	rad54l (ENSOMYG00000031865)	PSMA8 (ENSOMYG00000031952)	TAF4B (ENSOMYG00000032028) ##22	ENSOMYG00000055279	ENSOMYG00000032056	AQP4 (ENSOMYG00000070209)	cdh2 (ENSOMYG00000032078)	ENSOMYG00000063226	ENSOMYG00000032104	ENSOMYG00000032128	ENSOMYG00000032154	ttr (ENSOMYG00000032166)	ENSOMYG00000032203	ENSOMYG00000067818	ENSOMYG00000056633	ENSOMYG00000032386	ENSOMYG00000069389	ENSOMYG00000043268
Huchen	MODERN SPECIES	150	ENSHHUG00000042233	SOST (ENSHHUG00000042239)	meox1 (ENSHHUG00000042244)	etv4 (ENSHHUG00000042254)	DHX8 (ENSHHUG00000042276)	THRA (ENSHHUG00000042494)	ormdl3 (ENSHHUG00000043012)	wnt3 (ENSHHUG00000043016)	ENSHHUG00000043024	ptprfa (ENSHHUG00000043036)	ENSHHUG00000044902	st3gal3a (ENSHHUG00000044967)	ENSHHUG00000044975	rad54l (ENSHHUG00000044982)	psma8 (ENSHHUG00000045008)	ENSHHUG00000045034 ##22	ENSHHUG00000045041	ENSHHUG00000045043
Northern pike	MODERN SPECIES	7	gadd45ab (ENSELUG00000002845)	ENSELUG00000002817	ENSELUG00000002686	glula (ENSELUG00000002681)	pbx1b (ENSELUG00000002662)	med8 (ENSELUG00000002630)	SZT2 (ENSELUG00000002583)	hyi (ENSELUG00000002519)	ENSELUG00000032995	ptprfa (ENSELUG00000002466)	ENSELUG00000002353	st3gal3a (ENSELUG00000002316)	ENSELUG00000002303	ENSELUG00000000063	psma8 (ENSELUG00000002277)	TAF4B (ENSELUG00000002260) ##22	ENSELUG00000002251	aqp4 (ENSELUG00000002244)	cdh2 (ENSELUG00000002228)	ENSELUG00000002204	dsc2l (ENSELUG00000002197)	ENSELUG00000002186	ttr (ENSELUG00000000062)	b4galt6 (ENSELUG00000002166)	opn7a (ENSELUG00000002161)	ENSELUG00000034701	TRAPPC8 (ENSELUG00000002149)	ENSELUG00000002121	mep1ba (ENSELUG00000000058)	mcm3l (ENSELUG00000002112)	ARHGAP39 (ENSELUG00000002107)
Acanthomorphata	ANCESTRAL SPECIES	291																ENSGT00390000011620.a.a.a ##22	ENSGT00940000156453.b	ENSGT00510000049120	ENSGT00940000156037.a.e	ENSGT00940000155981.h	ENSGT01030000234624.b.b.c.a.b	ENSGT01030000234624.b.b.c.a.a	ENSGT00940000153229.A.a.b	ENSGT00940000158019
Euacanthomorphacea	ANCESTRAL SPECIES	79						ENSGT00390000003161	ENSGT00390000015908	ENSGT00940000156897	ENSGT00950000182993.B.a.d	ENSGT00940000157285.f	ENSGT00940000154930.eb	ENSGT00940000155060.C.a.b	ENSGT00390000005462	ENSGT00390000018402	ENSGT00550000074980	ENSGT00390000011620.a.a.a ##22	ENSGT00940000156453.b	ENSGT00510000049120	ENSGT00940000156037.a.e	ENSGT00940000155981.h	ENSGT01030000234624.b.b.c.a.b	ENSGT01030000234624.b.b.c.a.a	ENSGT00940000153229.A.a.b	ENSGT00940000158019	ENSGT00510000046760.b	ENSGT00390000008489	ENSGT00940000160274	ENSGT00390000011943.b	ENSGT00530000063553.b.a	ENSGT00390000007212	ENSGT00390000012434
Percomorphaceae	ANCESTRAL SPECIES	104							ENSGT00390000003161	ENSGT00940000156897	ENSGT00950000182993.B.a.d	ENSGT00940000157285.f	ENSGT00940000154930.eb	ENSGT00940000155060.C.a.b	ENSGT00390000005462	ENSGT00390000018402	ENSGT00550000074980	ENSGT00390000011620.a.a.a ##22	ENSGT00940000156453.b	ENSGT00510000049120	ENSGT00940000156037.a.e	ENSGT00940000155981.h	ENSGT01030000234624.b.b.c.a.b	ENSGT01030000234624.b.b.c.a.a	ENSGT00940000153229.A.a.b	ENSGT00940000158019
Percomorphaceae_B	ANCESTRAL SPECIES	9	ENSGT00730000111147	ENSGT00940000164495.c.b	ENSGT00940000155438.b	ENSGT00390000012078.a.a	ENSGT00950000182915.b.b.a.b.c.a	ENSGT00390000003161	ENSGT00390000015908	ENSGT00940000156897	ENSGT00950000182993.B.a.d	ENSGT00940000157285.f	ENSGT00940000154930.eb	ENSGT00940000155060.C.a.b	ENSGT00390000005462	ENSGT00390000018402	ENSGT00550000074980	ENSGT00390000011620.a.a.a ##22	ENSGT00940000156453.b	ENSGT00510000049120	ENSGT00940000156037.a.e	ENSGT00940000155981.h	ENSGT01030000234624.b.b.c.a.b.d	ENSGT01030000234624.b.b.c.a.a	ENSGT00940000153229.A.a.b	ENSGT00940000158019	ENSGT00550000074917	ENSGT00940000161734	ENSGT00940000159676.a	ENSGT00940000156299	ENSGT00390000015332	ENSGT00940000155789	ENSGT01030000234598.a.b
Ovalentaria	ANCESTRAL SPECIES	9	ENSGT00730000111147	ENSGT00940000164495.c.b	ENSGT00940000155438.b	ENSGT00390000012078.a.a	ENSGT00950000182915.b.b.a.b.c.a	ENSGT00390000003161	ENSGT00390000015908	ENSGT00940000156897	ENSGT00950000182993.B.a.d	ENSGT00940000157285.f	ENSGT00940000154930.eb	ENSGT00940000155060.C.a.b	ENSGT00390000005462	ENSGT00390000018402	ENSGT00550000074980	ENSGT00390000011620.a.a.a ##22	ENSGT00940000156453.b	ENSGT00510000049120	ENSGT00940000156037.a.e	ENSGT00940000155981.h	ENSGT00550000074917	ENSGT00940000161734	ENSGT00940000159676.a	ENSGT00940000156299	ENSGT00390000015332	ENSGT00940000155789	ENSGT01030000234598.a.b	ENSGT00940000153421.a.a.a.b	ENSGT00950000183039.B.b.c	ENSGT00950000183111.b.a.b	ENSGT00940000157769
Atherinomorphae	ANCESTRAL SPECIES	77						ENSGT00940000155438.b	ENSGT00950000182915.b.b.a.b.c.a	ENSGT00390000003161	ENSGT00390000015908	ENSGT00940000156897	ENSGT00940000154930.eb	ENSGT00940000155060.C.a.b	ENSGT00390000005462	ENSGT00390000018402	ENSGT00550000074980	ENSGT00390000011620.a.a.a ##22	ENSGT00940000156453.b	ENSGT00510000049120
Oryzias	ANCESTRAL SPECIES	5	ENSGT00940000155136	ENSGT00940000157668	ENSGT00950000182916.a.b.a.a.a.a.f	ENSGT00940000165098	ENSGT00940000155026.d	ENSGT00940000159943	ENSGT00940000156750	ENSGT00940000158998	ENSGT00390000003182.f	ENSGT00940000160221.c	ENSGT00940000154930.eb	ENSGT00940000155060.C.a.b	ENSGT00390000005462	ENSGT00390000018402	ENSGT00550000074980	ENSGT00390000011620.a.a.a ##22	ENSGT00940000156453.b	ENSGT00510000049120	ENSGT00940000158019	ENSGT01030000234624.b.b.c.a.b.d	ENSGT01030000234624.b.b.c.a.a.n	ENSGT00940000156897	ENSGT00390000015908	ENSGT00390000003161	ENSGT00950000182915.b.b.a.b.c.a	ENSGT00390000012434	ENSGT00390000005338	ENSGT00940000155438.b	ENSGT00940000165232	ENSGT00390000008489	ENSGT00950000183070.a.a.mb.b
Oryzias_b	ANCESTRAL SPECIES	26	ENSGT00940000157668	ENSGT00950000182916.a.b.a.a.a.a.f	ENSGT00940000165098	ENSGT00940000155026.d	ENSGT00940000159943	ENSGT00940000156750	ENSGT00940000158998	ENSGT00390000003182.f	ENSGT00940000160221.c	ENSGT00940000154930.eb	ENSGT00940000155060.C.a.b	ENSGT00940000155060.C.b.kb.e	ENSGT00390000005462	ENSGT00390000018402	ENSGT00550000074980	ENSGT00390000011620.a.a.a ##22	ENSGT00940000156453.b	ENSGT00510000049120	ENSGT00940000158019	ENSGT01030000234624.b.b.c.a.b.d	ENSGT01030000234624.b.b.c.a.a.n	ENSGT00940000156897	ENSGT00390000015908	ENSGT00390000003161	ENSGT00950000182915.b.b.a.b.c.a	ENSGT00390000012434	ENSGT00390000005338	ENSGT00940000155438.b	ENSGT00940000165232	ENSGT00390000008489	ENSGT00950000183070.a.a.mb.b
Javanese ricefish	MODERN SPECIES	18	tm2d1 (ENSOJAG00000001319)	nfia (ENSOJAG00000001201)	frem1b (ENSOJAG00000001136)	ENSOJAG00000000888	ENSOJAG00000000878	dbt (ENSOJAG00000000870)	lrrc39 (ENSOJAG00000000863)	trmt13 (ENSOJAG00000000854)	MAP1S (ENSOJAG00000000848)	ENSOJAG00000000568	ENSOJAG00000000279	hyi (ENSOJAG00000013036)	ENSOJAG00000013007	zgc:172121 (ENSOJAG00000012996)	ENSOJAG00000012992	ENSOJAG00000012955 ##22	ENSOJAG00000012881	ENSOJAG00000012860	b4galt6 (ENSOJAG00000012559)	ENSOJAG00000012532	ENSOJAG00000012525	ENSOJAG00000012443	rad54l (ENSOJAG00000012165)	ENSOJAG00000012139	ARHGAP39 (ENSOJAG00000012040)	ENSOJAG00000011915	ndufa11 (ENSOJAG00000011890)	ctns (ENSOJAG00000011848)	EPS15L1 (ENSOJAG00000011758)	zgc:171480 (ENSOJAG00000011746)	commd2 (ENSOJAG00000011736)
Indian medaka	MODERN SPECIES	34	ENSOMEG00000006951	SEMA5B (ENSOMEG00000006995)	CACNB4 (ENSOMEG00000007060)	ENSOMEG00000007084	etv5b (ENSOMEG00000007117)	ENSOMEG00000007135	ENSOMEG00000007192	ENSOMEG00000007220	crygmxl1 (ENSOMEG00000007230)	crygm6 (ENSOMEG00000007245)	ENSOMEG00000007266	SATB2 (ENSOMEG00000007330)	ENSOMEG00000007374	fam184aa (ENSOMEG00000007423)	ENSOMEG00000007443	ENSOMEG00000000183 ##22	ENSOMEG00000007520	b4galt6 (ENSOMEG00000007573)	ENSOMEG00000007667	ENSOMEG00000007718	rad54l (ENSOMEG00000007770)	ENSOMEG00000007802	ARHGAP39 (ENSOMEG00000007853)	ENSOMEG00000007906	ndufa11 (ENSOMEG00000007925)	ctns (ENSOMEG00000007944)	EPS15L1 (ENSOMEG00000008128)	zgc:171480 (ENSOMEG00000008184)	commd2 (ENSOMEG00000008208)	phb2b (ENSOMEG00000008241)	pde6d (ENSOMEG00000008268)
Oryzias_a	ANCESTRAL SPECIES	71	ENSGT00940000155136	ENSGT00940000157668	ENSGT00950000182916.a.b.a.a.a.a.f	ENSGT00940000165098	ENSGT00940000155026.d	ENSGT00940000159943	ENSGT00940000156750	ENSGT00940000158998	ENSGT00390000003182.f	ENSGT00940000160221.c	ENSGT00940000154930.eb	ENSGT00940000155060.C.a.b	ENSGT00390000005462	ENSGT00390000018402	ENSGT00550000074980	ENSGT00390000011620.a.a.a ##22	ENSGT00940000156453.b	ENSGT00940000158019	ENSGT01030000234624.b.b.c.a.b.d	ENSGT01030000234624.b.b.c.a.a.n	ENSGT00940000156897	ENSGT00390000015908	ENSGT00390000003161	ENSGT00950000182915.b.b.a.b.c.a.d	ENSGT00390000005338	ENSGT00940000155438.b	ENSGT00940000165232	ENSGT00390000008489	ENSGT00950000183070.a.a.mb.b	ENSGT00390000000263	ENSGT00390000011943.b
Chinese medaka	MODERN SPECIES	593		nfia (ENSOSIG00000006930)	ENSOSIG00000006929	frem1b (ENSOSIG00000006927)	RAB3B (ENSOSIG00000006918)	dbt (ENSOSIG00000006917)	lrrc39 (ENSOSIG00000006916)	trmt13 (ENSOSIG00000006915)	MAP1S (ENSOSIG00000006914)	ENSOSIG00000006913	ENSOSIG00000006911	ENSOSIG00000006910	ENSOSIG00000006909	hyi (ENSOSIG00000006908)	ENSOSIG00000006906	ENSOSIG00000006905 ##22
Japanese Medaka HdrR	MODERN SPECIES	18	ENSORLG00000022989	frem1b (ENSORLG00000003500)	ENSORLG00000029015	nrd1b (ENSORLG00000003474)	RAB3B (ENSORLG00000029024)	dbt (ENSORLG00000003352)	lrrc39 (ENSORLG00000003329)	trmt13 (ENSORLG00000003320)	MAP1S (ENSORLG00000003304)	ENSORLG00000003264	ptprfa (ENSORLG00000003198)	hyi (ENSORLG00000003173)	SZT2 (ENSORLG00000003146)	ENSORLG00000003078	ENSORLG00000003073	ENSORLG00000003056 ##22	ENSORLG00000003016	ENSORLG00000025611	b4galt6 (ENSORLG00000003005)	ENSORLG00000002986	ENSORLG00000002978	rad54l (ENSORLG00000002958)	ENSORLG00000026799	ARHGAP39 (ENSORLG00000022761)	ENSORLG00000002923	ctns (ENSORLG00000002869)	EPS15L1 (ENSORLG00000002847)	ENSORLG00000026616	commd2 (ENSORLG00000002784)	phb2b (ENSORLG00000002753)	pde6d (ENSORLG00000029770)
Cyprinodontiformes	ANCESTRAL SPECIES	80							ENSGT00940000155438.b	ENSGT00390000003161	ENSGT00390000015908	ENSGT00940000156897	ENSGT00940000154930.eb	ENSGT00940000155060.C.a.b	ENSGT00390000005462	ENSGT00390000018402	ENSGT00550000074980	ENSGT00390000011620.a.a.a ##22	ENSGT00940000156453.b
Aplocheiloidei	ANCESTRAL SPECIES	145							ENSGT00940000155438.b	ENSGT00390000003161	ENSGT00390000015908	ENSGT00940000156897	ENSGT00940000154930.eb	ENSGT00940000155060.C.a.b	ENSGT00390000005462	ENSGT00390000018402	ENSGT00550000074980	ENSGT00390000011620.a.a.a ##22	ENSGT00940000156453.b	ENSGT00940000156968	ENSGT00390000000263	ENSGT00390000011943.b	ENSGT00940000160274	ENSGT00390000008489	ENSGT00390000012434	ENSGT00940000165232	ENSGT00390000005338
Turquoise killifish	MODERN SPECIES	1621	ENSNFUG00015015412	UHMK1 (ENSNFUG00015013126)	AKR1A1B (ENSNFUG00015013149)	ENSNFUG00015013179	cherp (ENSNFUG00015013209)	DOHH (ENSNFUG00015013572)	EPS15L1A (ENSNFUG00015013696)	ENSNFUG00015016391	ARHGAP39 (ENSNFUG00015016394)	LRRC41 (ENSNFUG00015016406)	RAD54L (ENSNFUG00015016422)	KDM4A (ENSNFUG00015016697)	ptprfa (ENSNFUG00015017023)	HYI (ENSNFUG00015021903)	DDX10 (ENSNFUG00015021959)	ENSNFUG00015021961 ##22	ENSNFUG00015021970	LRRC40 (ENSNFUG00015022014)	pde6d (ENSNFUG00015022281)	RPL36 (ENSNFUG00015022284)	LMNB2 (ENSNFUG00015022297)	COMMD2 (ENSNFUG00015022447)	NDUFA11 (ENSNFUG00015022450)	zgc:171480 (ENSNFUG00015022451)	CTNS (ENSNFUG00015022453)	pacrg (ENSNFUG00015022457)	TRAPPC8 (ENSNFUG00015022483)	ENSNFUG00015022729	slc5a9 (ENSNFUG00015022772)	cdh2 (ENSNFUG00015023117)	CHUK (ENSNFUG00015024034)
Cyprinodontoidei	ANCESTRAL SPECIES																	ENSGT00390000011620.a.a.a ##22
NAME_4	ANCESTRAL SPECIES																	ENSGT00390000011620.a.a.a ##22
Mummichog	MODERN SPECIES	1830																ENSFHEG00000005649 ##22	ENSFHEG00000005639
Ovalentaria_B	ANCESTRAL SPECIES	8										ENSGT00940000159889.b.a	ENSGT00940000154930.eb	ENSGT00940000155060.C.a.b	ENSGT00390000005462	ENSGT00390000018402	ENSGT00550000074980	ENSGT00390000011620.a.a.a ##22	ENSGT00940000156453.b	ENSGT00510000049120	ENSGT00940000156037.a.e	ENSGT00940000155981.h	ENSGT00550000074917	ENSGT00940000161734	ENSGT00940000159676.a	ENSGT00940000156299	ENSGT00390000015332	ENSGT00940000155789	ENSGT01030000234598.a.b	ENSGT00940000153421.a.a.a.b	ENSGT00950000183039.B.b.c	ENSGT00950000183111.b.a.b	ENSGT00940000157769
Pomacentridae	ANCESTRAL SPECIES	14													ENSGT00940000156037.a.e	ENSGT00510000049120	ENSGT00940000156453.b	ENSGT00390000011620.a.a.a ##22	ENSGT00550000074980	ENSGT00390000018402	ENSGT00390000005462	ENSGT00940000155060.C.a.b	ENSGT00940000154930.eb	ENSGT00940000159889.b.a	ENSGT00530000063000.a.b.b	ENSGT00940000154030.a.a	ENSGT00940000153241.B.c	ENSGT01030000234527.B	ENSGT00950000182917.b.a.b	ENSGT00940000156474.a.b.d	ENSGT00940000157773	ENSGT00940000156970.c.b	ENSGT00940000158597
Bicolor damselfish	MODERN SPECIES	353															ENSSPAG00000015471	ENSSPAG00000015526 ##22	ENSSPAG00000015548	SZT2 (ENSSPAG00000015570)	hyi (ENSSPAG00000015691)	ptprfa (ENSSPAG00000015750)	ENSSPAG00000016117	ENSSPAG00000016146	ENSSPAG00000016245	atg4b (ENSSPAG00000016249)	dtymk (ENSSPAG00000016267)
Pomacentridae_A	ANCESTRAL SPECIES		ENSGT00950000183111.b.a.b	ENSGT00950000183039.B.b.c	ENSGT00940000153421.a.a.a.b	ENSGT00940000158512.a.k	ENSGT01030000234598.a.b	ENSGT00940000155789	ENSGT00390000015332	ENSGT00940000156299	ENSGT00940000159676.a	ENSGT00940000161734	ENSGT00550000074917	ENSGT00940000155981.h	ENSGT00940000156037.a.e	ENSGT00510000049120	ENSGT00940000156453.b	ENSGT00390000011620.a.a.a ##22	ENSGT00550000074980	ENSGT00390000018402	ENSGT00390000005462	ENSGT00940000155060.C.a.b	ENSGT00940000154930.eb	ENSGT00940000161131.a.b.b	ENSGT00940000159889.b.a	ENSGT00530000063000.a.b.b	ENSGT00940000154030.a.a	ENSGT00940000153241.B.c	ENSGT01030000234527.B	ENSGT00950000182917.b.a.b	ENSGT00940000156474.a.b.d	ENSGT00940000157773	ENSGT00940000156970.c.b
Amphiprion	ANCESTRAL SPECIES	2	ENSGT00940000157769	ENSGT00950000183039.B.b.c	ENSGT00940000153421.a.a.a.b	ENSGT00940000158512.a.k	ENSGT01030000234598.a.b	ENSGT00940000155789	ENSGT00390000015332	ENSGT00940000156299	ENSGT00940000159676.a	ENSGT00940000161734	ENSGT00550000074917	ENSGT00940000155981.h	ENSGT00940000156037.a.e	ENSGT00510000049120	ENSGT00940000156453.b	ENSGT00390000011620.a.a.a ##22	ENSGT00550000074980	ENSGT00390000018402	ENSGT00390000005462	ENSGT00940000155060.C.a.b	ENSGT00940000154930.eb	ENSGT00940000161131.a.b.b	ENSGT00940000159889.b.a	ENSGT00530000063000.a.b.b	ENSGT00940000154030.a.a	ENSGT00940000153241.B.c	ENSGT01030000234527.B	ENSGT00950000182917.b.a.b	ENSGT00940000156474.a.b.d	ENSGT00940000157773	ENSGT00940000156970.c.b
Clown anemonefish	MODERN SPECIES	570							ENSAOCG00000021457	ect2 (ENSAOCG00000002671)	b3gnt5a (ENSAOCG00000021630)	MCF2L2 (ENSAOCG00000021687)	rfc4 (ENSAOCG00000021730)	cdh2 (ENSAOCG00000021803)	aqp4 (ENSAOCG00000021830)	ENSAOCG00000021850	ENSAOCG00000021882	ENSAOCG00000021907 ##22	ENSAOCG00000021917	ENSAOCG00000021951	SZT2 (ENSAOCG00000022066)	hyi (ENSAOCG00000022117)	ptprfa (ENSAOCG00000022333)	ENSAOCG00000022446
Spiny chromis	MODERN SPECIES	102													cdh2 (ENSAPOG00000009139)	aqp4 (ENSAPOG00000009151)	ENSAPOG00000000882	ENSAPOG00000009226 ##22	ENSAPOG00000009242	ENSAPOG00000009265	SZT2 (ENSAPOG00000009423)	hyi (ENSAPOG00000009482)	ptprfa (ENSAPOG00000009749)	ENSAPOG00000009807	ENSAPOG00000009825
Cichlidae	ANCESTRAL SPECIES	17	ENSGT00530000063749.c.a	ENSGT00940000162978.b	ENSGT00940000159915.a	ENSGT00950000182964.a.b.b.a.a.a.a	ENSGT00940000175916	ENSGT00390000018319.a.b.b.b.a.a	ENSGT00400000024256	ENSGT00940000165071	ENSGT00530000064649	ENSGT00940000159889.b.a	ENSGT00940000154930.eb	ENSGT00940000155060.C.a.b	ENSGT00390000005462	ENSGT00390000018402	ENSGT00550000074980	ENSGT00390000011620.a.a.a ##22	ENSGT00940000156453.b	ENSGT00510000049120	ENSGT00940000156037.a.e	ENSGT00940000155981.h
Pseudocrenilabrinae	ANCESTRAL SPECIES	6	ENSGT00940000159915.a	ENSGT00950000182964.a.b.b.a.a.a.a	ENSGT00950000182964.a.b.b.a.a.a.b.b	ENSGT00950000182964.a.b.b.a.a.a.b.a	ENSGT00940000175916	ENSGT00390000018319.a.b.b.b.a.a	ENSGT00400000024256	ENSGT00940000165071	ENSGT00530000064649	ENSGT00940000159889.b.a	ENSGT00940000154930.eb	ENSGT00940000155060.C.a.b	ENSGT00390000005462	ENSGT00390000018402	ENSGT00550000074980	ENSGT00390000011620.a.a.a ##22	ENSGT00940000156453.b	ENSGT00510000049120	ENSGT00940000156037.a.e	ENSGT00940000155981.h
Pseudocrenilabrinae_A	ANCESTRAL SPECIES	3	ENSGT00940000159915.a	ENSGT00950000182964.a.b.b.a.a.a.a	ENSGT00950000182964.a.b.b.a.a.a.b.b	ENSGT00950000182964.a.b.b.a.a.a.b.a	ENSGT00940000175916	ENSGT00390000018319.a.b.b.b.a.a	ENSGT00400000024256	ENSGT00940000165071	ENSGT00530000064649	ENSGT00940000159889.b.a	ENSGT00940000154930.eb	ENSGT00940000155060.C.a.b	ENSGT00390000005462	ENSGT00390000018402	ENSGT00550000074980	ENSGT00390000011620.a.a.a ##22	ENSGT00940000156453.b	ENSGT00510000049120	ENSGT00940000156037.a.e	ENSGT00940000155981.h	ENSGT00950000183138.a.b.r.a	ENSGT01090000260051.b.b.dc.a	ENSGT00940000156557.g	ENSGT00730000111696.a	ENSGT00980000198690.a	ENSGT00940000154907.a.a.x.b	ENSGT01100000263520.a.b.a.a.a.b.a.b.c.d.a.a.a	ENSGT00530000063715.b	ENSGT00950000182910.a.a.d	ENSGT00390000003896	ENSGT00390000014995
Haplochromini	ANCESTRAL SPECIES	23	ENSGT00950000182964.a.b.b.a.a.a.a	ENSGT00950000182964.a.b.b.a.a.a.b.b	ENSGT00950000182964.a.b.b.a.a.a.b.a	ENSGT00940000175916	ENSGT00390000018319.a.b.b.b.a.a	ENSGT00400000024256	ENSGT00940000165071	ENSGT00530000064649	ENSGT00940000159889.b.a	ENSGT00940000154930.eb	ENSGT00940000155060.C.a.b	ENSGT00940000155060.C.b.kb.d.b	ENSGT00390000005462	ENSGT00390000018402	ENSGT00550000074980	ENSGT00390000011620.a.a.a ##22	ENSGT00940000156453.b	ENSGT00510000049120	ENSGT00940000156037.a.e	ENSGT00940000155981.h	ENSGT00950000183138.a.b.r.a	ENSGT01090000260051.b.b.dc.a	ENSGT00940000156557.g.e	ENSGT00730000111696.a	ENSGT00980000198690.a
Burton s mouthbrooder	MODERN SPECIES	325	APC2 (ENSHBUG00000012944)	ENSHBUG00000012933	DIRAS1 (ENSHBUG00000012919)	GADD45B (ENSHBUG00000012913)	CARTPT (ENSHBUG00000012900)	ENSHBUG00000012884	camk4 (ENSHBUG00000000371)	ENSHBUG00000012862	ENSHBUG00000012849	ENSHBUG00000001041	ptprfa (ENSHBUG00000012811)	hyi (ENSHBUG00000012676)	SZT2 (ENSHBUG00000012648)	ENSHBUG00000012494	DDX10 (ENSHBUG00000012476)	TAF4B (ENSHBUG00000000352) ##22	ENSHBUG00000012414	aqp4 (ENSHBUG00000012407)	cdh2 (ENSHBUG00000012367)
Haplochromini_A	ANCESTRAL SPECIES	26	ENSGT00950000182964.a.b.b.a.a.a.a	ENSGT00950000182964.a.b.b.a.a.a.b.b	ENSGT00950000182964.a.b.b.a.a.a.b.a	ENSGT00940000175916	ENSGT00390000018319.a.b.b.b.a.a	ENSGT00400000024256	ENSGT00940000165071	ENSGT00530000064649	ENSGT00940000159889.b.a	ENSGT00940000154930.eb	ENSGT00940000155060.C.a.b	ENSGT00940000155060.C.b.kb.d.b	ENSGT00390000005462	ENSGT00390000018402	ENSGT00550000074980	ENSGT00390000011620.a.a.a ##22	ENSGT00940000156453.b	ENSGT00510000049120	ENSGT00940000156037.a.e	ENSGT00940000155981.h	ENSGT00950000183138.a.b.r.a	ENSGT01090000260051.b.b.dc.a	ENSGT00940000156557.g.e	ENSGT00730000111696.a	ENSGT00940000162403	ENSGT00950000183014.f.a	ENSGT00970000193449	ENSGT00940000154907.a.a.x.b	ENSGT00530000063715.b	ENSGT01100000263520.a.b.a.a.a.b.a.b.c.d.a.a.a	ENSGT00950000182910.a.a.d
Haplochromini_B	ANCESTRAL SPECIES	29	ENSGT00950000182964.a.b.b.a.a.a.a	ENSGT00950000182964.a.b.b.a.a.a.b.b	ENSGT00950000182964.a.b.b.a.a.a.b.a	ENSGT00940000175916	ENSGT00390000018319.a.b.b.b.a.a	ENSGT00400000024256	ENSGT00940000165071	ENSGT00530000064649	ENSGT00940000159889.b.a	ENSGT00940000154930.eb	ENSGT00940000155060.C.a.b	ENSGT00940000155060.C.b.kb.d.b	ENSGT00390000005462	ENSGT00390000018402	ENSGT00550000074980	ENSGT00390000011620.a.a.a ##22	ENSGT00940000156453.b	ENSGT00510000049120	ENSGT00940000156037.a.e	ENSGT00940000155981.h	ENSGT00940000156258.f.a.a.a	ENSGT00950000183138.a.b.r.a	ENSGT01090000260051.b.b.dc.a	ENSGT00940000176853.A	ENSGT00940000156557.g.e	ENSGT00730000111696.a	ENSGT00980000198690.a	ENSGT00950000183014.f.a	ENSGT00970000193449	ENSGT00940000154907.a.a.x.b	ENSGT00530000063715.b
Zebra mbuna	MODERN SPECIES	1097	ENSMZEG00005003065	ENSMZEG00005003101	ENSMZEG00005003112	CARTPT (ENSMZEG00005003127)	ENSMZEG00005003146	ENSMZEG00005003162	ENSMZEG00005003176	ENSMZEG00005003191	ENSMZEG00005003207	ptprfa (ENSMZEG00005003235)	ENSMZEG00005003341	hyi (ENSMZEG00005003394)	SZT2 (ENSMZEG00005003433)	ENSMZEG00005003575	DDX10 (ENSMZEG00005003586)	ENSMZEG00005003611 ##22	ENSMZEG00005003642	ENSMZEG00005003708	ENSMZEG00005003726	cd59 (ENSMZEG00005003755)	ENSMZEG00005003773	eef1b2 (ENSMZEG00005003788)	ENSMZEG00005003811	ENSMZEG00005003842	ENSMZEG00005003860	ebpl (ENSMZEG00005003878)	ENSMZEG00005003894	cavin2b (ENSMZEG00005003917)	vps16 (ENSMZEG00005003978)	rgn (ENSMZEG00005004076)	ENSMZEG00005004100
Eastern happy	MODERN SPECIES	6	ENSACLG00000002817	ENSACLG00000002833	CARTPT (ENSACLG00000002852)	ENSACLG00000002871	ENSACLG00000002882	ENSACLG00000002889	ENSACLG00000002894	ENSACLG00000002940	ptprfa (ENSACLG00000003205)	ENSACLG00000003388	ENSACLG00000003396	hyi (ENSACLG00000003405)	SZT2 (ENSACLG00000003431)	ENSACLG00000003535	DDX10 (ENSACLG00000003559)	ENSACLG00000003572 ##22	ENSACLG00000003585	aqp4 (ENSACLG00000003595)	cdh2 (ENSACLG00000003613)	ENSACLG00000003650	ENSACLG00000003657	ENSACLG00000003662	ENSACLG00000003672	mlpha (ENSACLG00000003689)	ACKR3 (ENSACLG00000003728)	ENSACLG00000003732	ENSACLG00000003739	SNX9 (ENSACLG00000003794)	cd59 (ENSACLG00000003836)	ENSACLG00000003852	ENSACLG00000003860
P. nyererei	MODERN SPECIES	356	DIRAS1 (ENSPNYG00000000903)	GADD45B (ENSPNYG00000000960)	ENSPNYG00000001014	CARTPT (ENSPNYG00000001282)	ENSPNYG00000001293	ENSPNYG00000001304	ENSPNYG00000001370	ENSPNYG00000001376	ENSPNYG00000001382	ENSPNYG00000001388	ptprfa (ENSPNYG00000001412)	hyi (ENSPNYG00000001535)	SZT2 (ENSPNYG00000001578)	ENSPNYG00000001746	DDX10 (ENSPNYG00000001756)	ENSPNYG00000001771 ##22	ENSPNYG00000001803	ENSPNYG00000001861	aqp4 (ENSPNYG00000001878)	cdh2 (ENSPNYG00000001907)	ENSPNYG00000001972	ENSPNYG00000001993	mlpha (ENSPNYG00000002012)	ACKR3 (ENSPNYG00000002062)	SNX9 (ENSPNYG00000002081)	cd59 (ENSPNYG00000002135)	ENSPNYG00000002143	eef1b2 (ENSPNYG00000002183)	ENSPNYG00000002322	ENSPNYG00000003113	vps16 (ENSPNYG00000003154)
Midas cichlid	MODERN SPECIES	1114	ENSACIG00000012374	ENSACIG00000012457	si:ch211-191a24.4 (ENSACIG00000012534)	CARTPT (ENSACIG00000012539)	ENSACIG00000012552	ENSACIG00000012569	ENSACIG00000012583	ENSACIG00000012651	ENSACIG00000012660	ENSACIG00000012669	ptprfa (ENSACIG00000012701)	hyi (ENSACIG00000012771)	SZT2 (ENSACIG00000012806)	ENSACIG00000012919	DDX10 (ENSACIG00000012927)	ENSACIG00000012937 ##22	ENSACIG00000012964	ENSACIG00000013030	aqp4 (ENSACIG00000013051)	cdh2 (ENSACIG00000013175)
Percomorphaceae_C	ANCESTRAL SPECIES	8	ENSGT00730000111147	ENSGT00940000164495.c.b	ENSGT00940000155438.b	ENSGT00390000012078.a.a	ENSGT00950000182915.b.b.a.b.c.a	ENSGT00390000003161	ENSGT00390000015908	ENSGT00940000156897	ENSGT00950000182993.B.a.d	ENSGT00940000157285.f	ENSGT00940000154930.eb	ENSGT00940000155060.C.a.b	ENSGT00390000005462	ENSGT00390000018402	ENSGT00550000074980	ENSGT00390000011620.a.a.a ##22	ENSGT00940000156453.b	ENSGT00510000049120	ENSGT00940000156037.a.e	ENSGT00940000155981.h	ENSGT01030000234624.b.b.c.a.b.d	ENSGT01030000234624.b.b.c.a.a	ENSGT00940000153229.A.a.b	ENSGT00940000158019	ENSGT00550000074917	ENSGT00940000161734	ENSGT00940000159676.a	ENSGT00940000156299	ENSGT00390000015332	ENSGT00940000155789	ENSGT01030000234598.a.b
Percomorphaceae_D	ANCESTRAL SPECIES	8	ENSGT00730000111147	ENSGT00940000164495.c.b	ENSGT00940000155438.b	ENSGT00390000012078.a.a	ENSGT00950000182915.b.b.a.b.c.a	ENSGT00390000003161	ENSGT00390000015908	ENSGT00940000156897	ENSGT00950000182993.B.a.d	ENSGT00940000157285.f	ENSGT00940000154930.eb	ENSGT00940000155060.C.a.b	ENSGT00390000005462	ENSGT00390000018402	ENSGT00550000074980	ENSGT00390000011620.a.a.a ##22	ENSGT00940000156453.b	ENSGT00510000049120	ENSGT00940000155981.h	ENSGT01030000234624.b.b.c.a.b.d	ENSGT01030000234624.b.b.c.a.b.c.b	ENSGT01030000234624.b.b.c.a.a	ENSGT00940000153229.A.a.b	ENSGT00940000158019	ENSGT00550000074917	ENSGT00940000161734	ENSGT00940000159676.a	ENSGT00940000156299	ENSGT00390000015332	ENSGT00940000155789	ENSGT01030000234598.a.b
Anabantaria	ANCESTRAL SPECIES	7	ENSGT00730000111147	ENSGT00940000164495.c.b	ENSGT00940000155438.b	ENSGT00390000012078.a.a	ENSGT00950000182915.b.b.a.b.c.a	ENSGT00390000003161	ENSGT00390000015908	ENSGT00940000156897	ENSGT00950000182993.B.a.d	ENSGT00940000157285.f	ENSGT00940000154930.eb	ENSGT00940000155060.C.a.b	ENSGT00390000005462	ENSGT00390000018402	ENSGT00550000074980	ENSGT00390000011620.a.a.a ##22	ENSGT00940000156453.b	ENSGT00510000049120	ENSGT00940000155981.h	ENSGT01030000234624.b.b.c.a.b.d	ENSGT01030000234624.b.b.c.a.a	ENSGT00940000153229.A.a.b	ENSGT00940000158019	ENSGT00550000074917	ENSGT00940000161734	ENSGT00940000159676.a	ENSGT00940000156299	ENSGT00940000155789	ENSGT01030000234598.a.b	ENSGT00940000153421.a.a.a.b	ENSGT00950000183039.B.b.c
Zig-zag eel	MODERN SPECIES	18	ENSMAMG00000022202	ENSMAMG00000022197	ENSMAMG00000022193	ENSMAMG00000022195	rad54l (ENSMAMG00000022180)	st3gal3a (ENSMAMG00000028614)	ENSMAMG00000022165	ptprfa (ENSMAMG00000022139)	ENSMAMG00000022161	ENSMAMG00000025331	ENSMAMG00000022135	hyi (ENSMAMG00000022129)	SZT2 (ENSMAMG00000022118)	ENSMAMG00000022111	ENSMAMG00000022277	ENSMAMG00000028011 ##22	ENSMAMG00000024310	ENSMAMG00000022106	cdh2 (ENSMAMG00000006737)	ENSMAMG00000006788	ENSMAMG00000006823	ENSMAMG00000006841	TTR (ENSMAMG00000006873)	ENSMAMG00000006918	ENSMAMG00000006970	ENSMAMG00000007016	b3gnt5a (ENSMAMG00000007064)	ect2 (ENSMAMG00000007079)	nlgn1 (ENSMAMG00000007147)	ENSMAMG00000025926	ENSMAMG00000024981
Anabantoidei	ANCESTRAL SPECIES	33	ENSGT00730000111147	ENSGT00940000164495.c.b	ENSGT00940000155438.b	ENSGT00390000012078.a.a	ENSGT00950000182915.b.b.a.b.c.a	ENSGT00390000003161	ENSGT00390000015908	ENSGT00940000156897	ENSGT00950000182993.B.a.d	ENSGT00940000157285.f	ENSGT00940000154930.eb	ENSGT00940000155060.C.a.b	ENSGT00390000005462	ENSGT00390000018402	ENSGT00550000074980	ENSGT00390000011620.a.a.a ##22	ENSGT00940000156453.b	ENSGT00510000049120	ENSGT00940000155981.h	ENSGT01030000234624.b.b.c.a.b.d	ENSGT00550000074917	ENSGT00940000161734	ENSGT00940000159676.a	ENSGT00940000156299	ENSGT00940000155789	ENSGT01030000234598.a.b	ENSGT00940000153421.a.a.a.b	ENSGT00950000183039.B.b.c	ENSGT00950000183111.b.a.b
Climbing perch	MODERN SPECIES	17	ENSATEG00000006227	ENSATEG00000006341	ENSATEG00000006372	ENSATEG00000006383	ENSATEG00000006551	ENSATEG00000006598	ENSATEG00000006654	ENSATEG00000006759	rad54l (ENSATEG00000006767)	ENSATEG00000006836	st3gal3a (ENSATEG00000026417)	ENSATEG00000006859	ptprfa (ENSATEG00000006874)	hyi (ENSATEG00000007012)	ENSATEG00000007227	ENSATEG00000027172 ##22	ENSATEG00000027909	ENSATEG00000007286	ENSATEG00000029607	CDH2 (ENSATEG00000007302)	ENSATEG00000028170	ENSATEG00000029321	ENSATEG00000007537	ENSATEG00000007575	b3gnt5a (ENSATEG00000007604)	ect2 (ENSATEG00000007614)	ENSATEG00000007727	SPATA16 (ENSATEG00000007733)	ENSATEG00000030109	NLGN1 (ENSATEG00000007830)	NAALADL2 (ENSATEG00000007892)
Carangaria	ANCESTRAL SPECIES	37		ENSGT00940000164495.c.b	ENSGT00940000155438.b	ENSGT00390000012078.a.a	ENSGT00950000182915.b.b.a.b.c.a	ENSGT00390000003161	ENSGT00390000015908	ENSGT00940000156897	ENSGT00950000182993.B.a.d	ENSGT00940000157285.f	ENSGT00940000154930.eb	ENSGT00940000155060.C.a.b	ENSGT00390000005462	ENSGT00390000018402	ENSGT00550000074980	ENSGT00390000011620.a.a.a ##22	ENSGT00940000156453.b	ENSGT00510000049120	ENSGT00940000155981.h	ENSGT01030000234624.b.b.c.a.b.d	ENSGT01030000234624.b.b.c.a.a	ENSGT00940000153229.A.a.b	ENSGT00940000158019
Carangaria_A	ANCESTRAL SPECIES	91											ENSGT00940000154930.eb	ENSGT00940000155060.C.a.b	ENSGT00390000005462	ENSGT00390000018402	ENSGT00550000074980	ENSGT00390000011620.a.a.a ##22	ENSGT00940000156453.b	ENSGT00510000049120	ENSGT00940000155981.h	ENSGT01030000234624.b.b.c.a.b.d	ENSGT01030000234624.b.b.c.a.a	ENSGT00940000153229.A.a.b	ENSGT00940000158019	ENSGT00940000157285.f	ENSGT00950000182993.B.a.d	ENSGT00940000156897	ENSGT00390000015908	ENSGT00390000003161	ENSGT00950000182915.b.b.a.b.c.a	ENSGT00390000012078.a.a	ENSGT00940000155438.b
Seriola	ANCESTRAL SPECIES	131												ENSGT00940000155060.C.a.b	ENSGT00390000005462	ENSGT00390000018402	ENSGT00550000074980	ENSGT00390000011620.a.a.a ##22	ENSGT00940000156453.b	ENSGT00510000049120	ENSGT00940000155981.h	ENSGT01030000234624.b.b.c.a.b.d.g	ENSGT01030000234624.b.b.c.a.b.d.h	ENSGT01030000234624.b.b.c.a.a	ENSGT00940000153229.A.a.b	ENSGT00940000158019	ENSGT01060000248556.A.a.a.a.b.a.b	ENSGT00940000154930.eb	ENSGT00940000157285.f	ENSGT00950000182993.B.a.d	ENSGT00940000156897	ENSGT00390000015908	ENSGT00390000003161
Greater amberjack	MODERN SPECIES	108						ENSSDUG00000017821	ENSSDUG00000017829	ptprfa (ENSSDUG00000017848)	ENSSDUG00000017895	ENSSDUG00000017911	hyi (ENSSDUG00000017940)	SZT2 (ENSSDUG00000018123)	ENSSDUG00000018221	ENSSDUG00000018238	DDX10 (ENSSDUG00000018245)	ENSSDUG00000018256 ##22	ENSSDUG00000018284	ENSSDUG00000018333	ENSSDUG00000018343	cdh2 (ENSSDUG00000018365)	ENSSDUG00000018419	ENSSDUG00000018507	ENSSDUG00000018527	ENSSDUG00000018592	ttr (ENSSDUG00000018623)	b4galt6 (ENSSDUG00000018662)	crata (ENSSDUG00000018733)	ENSSDUG00000018982	st3gal3a (ENSSDUG00000019075)	ENSSDUG00000019108	ENSSDUG00000019120
Yellowtail amberjack	MODERN SPECIES	3221	spp2 (ENSSLDG00000012693)	alg11 (ENSSLDG00000012678)	cpb2 (ENSSLDG00000012664)	ENSSLDG00000012646	ENSSLDG00000012610	chst10 (ENSSLDG00000012582)	rpl31 (ENSSLDG00000012384)	MAP4K4 (ENSSLDG00000012306)	ENSSLDG00000012268	ENSSLDG00000012252	hyi (ENSSLDG00000012220)	ENSSLDG00000012201	SZT2 (ENSSLDG00000012083)	ENSSLDG00000012059	DDX10 (ENSSLDG00000012041)	ENSSLDG00000012017 ##22	ENSSLDG00000011998	ENSSLDG00000011964	pcdh18b (ENSSLDG00000011936)	ENSSLDG00000011918	pcdh10b (ENSSLDG00000011899)	hspa9 (ENSSLDG00000011830)	ENSSLDG00000011811	ENSSLDG00000011795	ENSSLDG00000011783	ENSSLDG00000011767	SLITRK2 (ENSSLDG00000011756)	ENSSLDG00000011727	ENSSLDG00000011709	ENSSLDG00000011696	ENSSLDG00000011683
Barramundi perch	MODERN SPECIES	337														SZT2 (ENSLCAG00010025961)	DDX10 (ENSLCAG00010025970)	ENSLCAG00010025971 ##22	ENSLCAG00010025972	ENSLCAG00010025974	rfc4 (ENSLCAG00010025975)	ENSLCAG00010025983	b3gnt5a (ENSLCAG00010025999)	ect2 (ENSLCAG00010026020)	ENSLCAG00010026072
Pleuronectoidei	ANCESTRAL SPECIES	66	ENSGT00390000012434	ENSGT00940000164495.c.b	ENSGT00940000155438.b	ENSGT00390000012078.a.a	ENSGT00950000182915.b.b.a.b.c.a	ENSGT00390000003161	ENSGT00390000015908	ENSGT00940000156897	ENSGT00950000182993.B.a.d	ENSGT00940000157285.f	ENSGT00940000154930.eb	ENSGT00940000155060.C.a.b	ENSGT00390000005462	ENSGT00390000018402	ENSGT00550000074980	ENSGT00390000011620.a.a.a ##22	ENSGT00940000156453.b	ENSGT00510000049120	ENSGT00940000155981.h	ENSGT01030000234624.b.b.c.a.b.d	ENSGT01030000234624.b.b.c.a.a	ENSGT00940000153229.A.a.b	ENSGT00940000158019
Turbot	MODERN SPECIES	3	ENSSMAG00000034336	ENSSMAG00000015363	trappc3 (ENSSMAG00000035435)	ENSSMAG00000023143	ENSSMAG00000027812	ENSSMAG00000028775	ENSSMAG00000027470	rad54l (ENSSMAG00000025409)	ENSSMAG00000037156	st3gal3a (ENSSMAG00000030052)	ENSSMAG00000034089	ptprfa (ENSSMAG00000036071)	hyi (ENSSMAG00000018790)	SZT2 (ENSSMAG00000018747)	ENSSMAG00000018735	ENSSMAG00000029796 ##22	ENSSMAG00000018691	ENSSMAG00000023652	ENSSMAG00000018666	ENSSMAG00000018656	ENSSMAG00000018650	ENSSMAG00000021814	ENSSMAG00000028022	ENSSMAG00000030055	ENSSMAG00000035436	ENSSMAG00000005019	ENSSMAG00000005047	ENSSMAG00000027522	ENSSMAG00000005118	ENSSMAG00000005322	ENSSMAG00000005362
Tongue sole	MODERN SPECIES	11	ARHGAP39 (ENSCSEG00000001973)	ENSCSEG00000001980	rad54l (ENSCSEG00000001983)	ttc12 (ENSCSEG00000001990)	ENSCSEG00000001993	st3gal3a (ENSCSEG00000001995)	ENSCSEG00000002011	ENSCSEG00000002015	ENSCSEG00000002020	ENSCSEG00000002023	ptprfa (ENSCSEG00000002028)	hyi (ENSCSEG00000002042)	SZT2 (ENSCSEG00000002054)	ENSCSEG00000002077	DDX10 (ENSCSEG00000002080)	ENSCSEG00000002082 ##22	ENSCSEG00000002086	ENSCSEG00000002098	cdh2 (ENSCSEG00000002100)	ENSCSEG00000002118	ENSCSEG00000002167	ENSCSEG00000002178	ttr (ENSCSEG00000002182)	b4galt6 (ENSCSEG00000002190)	BPHL (ENSCSEG00000002210)	ENSCSEG00000002216	SLC22A23 (ENSCSEG00000002224)	DSP (ENSCSEG00000002245)	tbc1d7 (ENSCSEG00000002278)	PHACTR1 (ENSCSEG00000002267)	sirt5 (ENSCSEG00000002284)
Eupercaria	ANCESTRAL SPECIES	8											ENSGT00940000154930.eb	ENSGT00940000155060.C.a.b	ENSGT00390000005462	ENSGT00390000018402	ENSGT00550000074980	ENSGT00390000011620.a.a.a ##22	ENSGT00940000156453.b	ENSGT00510000049120	ENSGT00940000156037.a.e	ENSGT00940000155981.h	ENSGT01030000234624.b.b.c.a.b.d	ENSGT01030000234624.b.b.c.a.a	ENSGT00940000153229.A.a.b	ENSGT00940000158019	ENSGT00550000074917	ENSGT00940000161734	ENSGT00940000159676.a	ENSGT00940000156299	ENSGT00390000015332	ENSGT00940000155789	ENSGT01030000234598.a.b
Tetraodontidae	ANCESTRAL SPECIES	77	ENSGT00390000006932	ENSGT00950000182930.C.f	ENSGT00530000063553.b.a	ENSGT00500000044869.a.b	ENSGT00940000165304	ENSGT00730000111147	ENSGT00940000164495.c.b	ENSGT00940000155438.b	ENSGT00390000003161	ENSGT00390000015908	ENSGT00940000156897	ENSGT00940000154930.eb	ENSGT00940000155060.C.a.b	ENSGT00390000005462	ENSGT00550000074980	ENSGT00390000011620.a.a.a ##22	ENSGT00940000156453.b
Fugu	MODERN SPECIES	12	cherp (ENSTRUG00000007429)	ENSTRUG00000029023	EPS15L1 (ENSTRUG00000007862)	ARHGAP39 (ENSTRUG00000008303)	ENSTRUG00000025668	rad54l (ENSTRUG00000008410)	ENSTRUG00000008660	ptprfa (ENSTRUG00000008928)	ift57 (ENSTRUG00000010380)	hyi (ENSTRUG00000010400)	ENSTRUG00000010881	ENSTRUG00000026671	slc5a9 (ENSTRUG00000010971)	ENSTRUG00000033114	ENSTRUG00000032498	ENSTRUG00000011095 ##22	ENSTRUG00000032873	ENSTRUG00000011239	ENSTRUG00000025418	ENSTRUG00000032257	ttc39c (ENSTRUG00000011251)	zgc:103559 (ENSTRUG00000011363)	dtymk (ENSTRUG00000029570)	atg4b (ENSTRUG00000029746)	dtymk (ENSTRUG00000011656)	atg4b (ENSTRUG00000011726)	boka (ENSTRUG00000011955)	FARP2 (ENSTRUG00000012014)	hdlbpa (ENSTRUG00000012148)	SOX14 (ENSTRUG00000012630)	HS2ST1 (ENSTRUG00000012639)
Tetraodon	MODERN SPECIES	26	ENSTNIG00000005116	fxr2 (ENSTNIG00000005118)	haus4 (ENSTNIG00000005119)	dock11 (ENSTNIG00000005120)	ENSTNIG00000000661	ENSTNIG00000005122	e2f7 (ENSTNIG00000005126)	csrp2 (ENSTNIG00000005127)	zdhhc17 (ENSTNIG00000005128)	MORN4 (ENSTNIG00000005131)	hoga1 (ENSTNIG00000005132)	ENSTNIG00000005143	ENSTNIG00000001619	slc5a9 (ENSTNIG00000005144)	slc5a9 (ENSTNIG00000005145)	ENSTNIG00000005146 ##22	ENSTNIG00000005147	ENSTNIG00000005974	ENSTNIG00000005149	palm1b (ENSTNIG00000005153)	SLC1A3 (ENSTNIG00000005166)	ENSTNIG00000005167	ENSTNIG00000005168	ENSTNIG00000005169	e2f4 (ENSTNIG00000005170)	zgc:154077 (ENSTNIG00000005171)	ENSTNIG00000005185	ENSTNIG00000005186	ENSTNIG00000005188	ENSTNIG00000005189	ENSTNIG00000005190
Eupecaria_A	ANCESTRAL SPECIES	11											ENSGT00940000154930.eb	ENSGT00940000155060.C.a.b	ENSGT00390000005462	ENSGT00390000018402	ENSGT00550000074980	ENSGT00390000011620.a.a.a ##22	ENSGT00940000156453.b	ENSGT00510000049120	ENSGT00940000156037.a.e	ENSGT00940000155981.h	ENSGT01030000234624.b.b.c.a.b.d	ENSGT01030000234624.b.b.c.a.a	ENSGT00940000153229.A.a.b	ENSGT00940000158019	ENSGT00550000074917	ENSGT00940000161734	ENSGT00940000159676.a	ENSGT00940000156299	ENSGT00390000015332	ENSGT00940000155789	ENSGT01030000234598.a.b
Eupecaria_B	ANCESTRAL SPECIES	10	ENSGT00730000111147	ENSGT00940000164495.c.b	ENSGT00940000155438.b	ENSGT00390000012078.a.a	ENSGT00950000182915.b.b.a.b.c.a	ENSGT00390000003161	ENSGT00390000015908	ENSGT00940000156897	ENSGT00950000182993.B.a.d	ENSGT00940000157285.f	ENSGT00940000154930.eb	ENSGT00940000155060.C.a.b	ENSGT00390000005462	ENSGT00390000018402	ENSGT00550000074980	ENSGT00390000011620.a.a.a ##22	ENSGT00940000156453.b	ENSGT00510000049120	ENSGT00940000156037.a.e	ENSGT00940000155981.h	ENSGT01030000234624.b.b.c.a.b.d	ENSGT01030000234624.b.b.c.a.a	ENSGT00940000153229.A.a.b	ENSGT00940000158019	ENSGT00550000074917	ENSGT00940000161734	ENSGT00940000159676.a	ENSGT00940000156299	ENSGT00390000015332	ENSGT00940000155789	ENSGT01030000234598.a.b
Perciformes	ANCESTRAL SPECIES	39	ENSGT00730000111147	ENSGT00940000164495.c.b	ENSGT00940000155438.b	ENSGT00390000012078.a.a	ENSGT00950000182915.b.b.a.b.c.a	ENSGT00390000003161	ENSGT00390000015908	ENSGT00940000156897	ENSGT00950000182993.B.a.d	ENSGT00940000157285.f	ENSGT00940000154930.eb	ENSGT00940000155060.C.a.b	ENSGT00390000005462	ENSGT00390000018402	ENSGT00550000074980	ENSGT00390000011620.a.a.a ##22	ENSGT00940000156453.b	ENSGT00510000049120	ENSGT00940000156037.a.f.e	ENSGT00940000155981.h	ENSGT01030000234624.b.b.c.a.b.d	ENSGT01030000234624.b.b.c.a.a	ENSGT01050000245154	ENSGT00940000158019	ENSGT00940000157546	ENSGT00390000012434	ENSGT00940000165232	ENSGT00390000005338	ENSGT00390000000568	ENSGT00390000008489	ENSGT00940000160274
Cottioidei	ANCESTRAL SPECIES	61	ENSGT01030000234624.b.b.c.a.b.d	ENSGT00390000011943.b	ENSGT00940000160274	ENSGT00390000008489	ENSGT00390000000568	ENSGT00390000005338	ENSGT00390000012434	ENSGT00940000165232	ENSGT00940000157546	ENSGT00940000158019	ENSGT01030000234624.b.b.c.a.a	ENSGT00940000155981.h	ENSGT00940000156037.a.f.e	ENSGT00510000049120	ENSGT00940000156453.b	ENSGT00390000011620.a.a.a ##22	ENSGT00550000074980	ENSGT00390000018402	ENSGT00390000005462	ENSGT00940000155060.C.a.b	ENSGT00940000154930.eb
Stickleback	MODERN SPECIES	8											si:ch211-214c7.5 (ENSGACG00000002920)	ENSGACG00000002924	cdh2 (ENSGACG00000002928)	ENSGACG00000002930	ENSGACG00000002934	ENSGACG00000002940 ##22	ENSGACG00000002948	ENSGACG00000002950	SZT2 (ENSGACG00000002952)	hyi (ENSGACG00000002976)	ptprfa (ENSGACG00000002994)	ENSGACG00000003008	ENSGACG00000003018	klf2a (ENSGACG00000003021)	EPS15L1 (ENSGACG00000003029)	rad23ab (ENSGACG00000003046)	ENSGACG00000003052	ARHGAP39 (ENSGACG00000003082)	ST3GAL3 (ENSGACG00000003093)	rad54l (ENSGACG00000003111)	ENSGACG00000003125
Lumpfish	MODERN SPECIES	19	rpl36 (ENSCLMG00005019733)	lmnb2 (ENSCLMG00005019742)	commd2 (ENSCLMG00005020022)	TRAPPC8 (ENSCLMG00005020031)	ctns (ENSCLMG00005020082)	ndufa11 (ENSCLMG00005020083)	zgc:171480 (ENSCLMG00005020087)	slc5a9 (ENSCLMG00005020095)	b4galt6 (ENSCLMG00005020243)	ENSCLMG00005020258	cdh2 (ENSCLMG00005020259)	ENSCLMG00005020293	ENSCLMG00005020294	ENSCLMG00005020295	ENSCLMG00005020296	ENSCLMG00005020297 ##22	ENSCLMG00005020298	ENSCLMG00005000206	hyi (ENSCLMG00005000212)	ptprfa (ENSCLMG00005000384)	ENSCLMG00005009510	ENSCLMG00005010982	rad54l (ENSCLMG00005010988)	ENSCLMG00005011654	st3gal3a (ENSCLMG00005011655)	ARHGAP39 (ENSCLMG00005011657)	dohh (ENSCLMG00005011670)	RSPH6A (ENSCLMG00005011672)	LONP1 (ENSCLMG00005011674)	LRRC24 (ENSCLMG00005011705)	sass6 (ENSCLMG00005011708)
Perciformes_a	ANCESTRAL SPECIES	47	ENSGT00730000111147	ENSGT00940000164495.c.b	ENSGT00940000155438.b	ENSGT00390000012078.a.a	ENSGT00950000182915.b.b.a.b.c.a	ENSGT00390000003161	ENSGT00390000015908	ENSGT00940000156897	ENSGT00950000182993.B.a.d	ENSGT00940000157285.f	ENSGT00940000154930.eb	ENSGT00940000155060.C.a.b	ENSGT00390000005462	ENSGT00390000018402	ENSGT00550000074980	ENSGT00390000011620.a.a.a ##22	ENSGT00940000156453.b	ENSGT00940000156037.a.e	ENSGT00940000155981.h	ENSGT01030000234624.b.b.c.a.b.d	ENSGT01030000234624.b.b.c.a.a	ENSGT01050000245154	ENSGT00940000158019	ENSGT00940000157546	ENSGT00390000012434	ENSGT00940000165232	ENSGT00390000005338	ENSGT00390000000568	ENSGT00390000008489	ENSGT00940000160274	ENSGT00390000011943.b
Pike perch	MODERN SPECIES	26	EPS15L1 (ENSSLUG00000000648)	NQO1 (ENSSLUG00000000876)	rad23ab (ENSSLUG00000000882)	ENSSLUG00000000888	ARHGAP39 (ENSSLUG00000000897)	ENSSLUG00000000909	rad54l (ENSSLUG00000000942)	ENSSLUG00000000974	st3gal3a (ENSSLUG00000000977)	ENSSLUG00000000985	ENSSLUG00000000999	ptprfa (ENSSLUG00000001867)	hyi (ENSSLUG00000018892)	SZT2 (ENSSLUG00000018929)	ENSSLUG00000019035	ENSSLUG00000019036 ##22	ENSSLUG00000019045	cdh2 (ENSSLUG00000019144)	ENSSLUG00000020930	ENSSLUG00000020936	ENSSLUG00000020949	ENSSLUG00000020971	b4galt6 (ENSSLUG00000021003)	slc5a9 (ENSSLUG00000021204)	ndufa11 (ENSSLUG00000021213)	zgc:171480 (ENSSLUG00000021217)	ctns (ENSSLUG00000021220)	TRAPPC8 (ENSSLUG00000021244)	commd2 (ENSSLUG00000021290)	lmnb2 (ENSSLUG00000021344)	ENSSLUG00000022160
Channel bull blenny	MODERN SPECIES	18	cherp (ENSCGOG00000002405)	cherp (ENSCGOG00000002423)	ENSCGOG00000002475	klf2a (ENSCGOG00000002476)	EPS15L1 (ENSCGOG00000002499)	ARHGAP39 (ENSCGOG00000002947)	ENSCGOG00000002952	rad54l (ENSCGOG00000002968)	ENSCGOG00000003519	st3gal3a (ENSCGOG00000003522)	ENSCGOG00000003562	ptprfa (ENSCGOG00000004545)	hyi (ENSCGOG00000007598)	SZT2 (ENSCGOG00000007602)	ENSCGOG00000007621	TAF4B (ENSCGOG00000007623) ##22	ENSCGOG00000007624	aqp4 (ENSCGOG00000007648)	ENSCGOG00000007948	ENSCGOG00000007955	cdh2 (ENSCGOG00000008039)	ENSCGOG00000011181	ENSCGOG00000011182	ttr (ENSCGOG00000011190)	b4galt6 (ENSCGOG00000011204)	slc5a9 (ENSCGOG00000011737)	ndufa11 (ENSCGOG00000015413)	zgc:171480 (ENSCGOG00000015416)	ctns (ENSCGOG00000015418)	TRAPPC8 (ENSCGOG00000015459)	commd2 (ENSCGOG00000017153)
Eupecaria_C	ANCESTRAL SPECIES	4		ENSGT00940000164495.c.b	ENSGT00940000155438.b	ENSGT00390000012078.a.a	ENSGT00950000182915.b.b.a.b.c.a	ENSGT00390000003161	ENSGT00390000015908	ENSGT00940000156897	ENSGT00950000182993.B.a.d	ENSGT00940000157285.f	ENSGT00940000154930.eb	ENSGT00940000155060.C.a.b	ENSGT00390000005462	ENSGT00390000018402	ENSGT00550000074980	ENSGT00390000011620.a.a.a ##22	ENSGT00940000156453.b	ENSGT00510000049120	ENSGT00940000156037.a.e	ENSGT00940000155981.h	ENSGT01030000234624.b.b.c.a.b.d	ENSGT01030000234624.b.b.c.a.a	ENSGT00940000153229.A.a.b	ENSGT00940000158019	ENSGT00550000074917	ENSGT00940000161734	ENSGT00940000159676.a	ENSGT00940000156299	ENSGT00390000015332	ENSGT00940000155789	ENSGT01030000234598.a.b
Eupercaria_incertae_sedis	ANCESTRAL SPECIES	3				ENSGT00390000012078.a.a	ENSGT00950000182915.b.b.a.b.c.a	ENSGT00390000003161	ENSGT00390000015908	ENSGT00940000156897	ENSGT00950000182993.B.a.d	ENSGT00940000157285.f	ENSGT00940000154930.eb	ENSGT00940000155060.C.a.b	ENSGT00390000005462	ENSGT00390000018402	ENSGT00550000074980	ENSGT00390000011620.a.a.a ##22	ENSGT00940000156453.b	ENSGT00510000049120	ENSGT00940000156037.a.e	ENSGT00940000155981.h	ENSGT01030000234624.b.b.c.a.b.d	ENSGT01030000234624.b.b.c.a.a	ENSGT00940000153229.A.a.b	ENSGT00940000158019	ENSGT00550000074917	ENSGT00940000161734	ENSGT00940000159676.a	ENSGT00940000156299	ENSGT00390000015332	ENSGT00940000155789	ENSGT01030000234598.a.b
European seabass	MODERN SPECIES	17	ENSDLAG00005034664	ENSDLAG00005015454	ENSDLAG00005016158	ENSDLAG00005015398	ENSDLAG00005015384	ENSDLAG00005032783	ENSDLAG00005033353	rad54l (ENSDLAG00005015312)	ENSDLAG00005015291	ENSDLAG00005015203	ptprfa (ENSDLAG00005013697)	ENSDLAG00005026628	hyi (ENSDLAG00005034526)	SZT2 (ENSDLAG00005013045)	ENSDLAG00005033585	ENSDLAG00005034967 ##22	ENSDLAG00005029757	ENSDLAG00005012937	aqp4 (ENSDLAG00005012929)	ENSDLAG00005012919	cdh2 (ENSDLAG00005008669)	ENSDLAG00005008504	ENSDLAG00005030275	ENSDLAG00005008474	TTR (ENSDLAG00005031018)	ENSDLAG00005008401	ENSDLAG00005034981	b3gnt5a (ENSDLAG00005032048)	ENSDLAG00005007937	ect2 (ENSDLAG00005007777)	SPATA16 (ENSDLAG00005007751)
Large yellow croaker	MODERN SPECIES	489	ENSLCRG00005023377	ENSLCRG00005009737	macir (ENSLCRG00005009739)	rad23ab (ENSLCRG00005009745)	ENSLCRG00005009751	ARHGAP39 (ENSLCRG00005009758)	ENSLCRG00005009763	rad54l (ENSLCRG00005009767)	ENSLCRG00005009949	st3gal3a (ENSLCRG00005009950)	ENSLCRG00005009987	ptprfa (ENSLCRG00005010102)	hyi (ENSLCRG00005012008)	SZT2 (ENSLCRG00005012011)	ENSLCRG00005012013	TAF4B (ENSLCRG00005012016) ##22	ENSLCRG00005012020	aqp4 (ENSLCRG00005012025)	cdh2 (ENSLCRG00005012107)	ENSLCRG00005015772	ENSLCRG00005015775	ENSLCRG00005015778	ENSLCRG00005015779	ENSLCRG00005015780	ENSLCRG00005015781	ENSLCRG00005015782	ttr (ENSLCRG00005015784)	b4galt6 (ENSLCRG00005015788)	rfc4 (ENSLCRG00005015835)	MCF2L2 (ENSLCRG00005015840)	b3gnt5a (ENSLCRG00005015904)
Gilthead seabream	MODERN SPECIES	2	lmnb2 (ENSSAUG00010023215)	commd2 (ENSSAUG00010023211)	ENSSAUG00010023206	ctns (ENSSAUG00010023205)	ENSSAUG00010023204	NDUFA11 (ENSSAUG00010023201)	ENSSAUG00010023200	zgc:171480 (ENSSAUG00010023199)	slc5a9 (ENSSAUG00010020023)	ENSSAUG00010019927	ENSSAUG00010019926	sass6 (ENSSAUG00010019923)	pde6d (ENSSAUG00010019860)	lrrc40 (ENSSAUG00010019857)	ENSSAUG00010019424	ENSSAUG00010019414 ##22	ENSSAUG00010019410	ENSSAUG00010019409	ENSSAUG00010019407	SZT2 (ENSSAUG00010019387)	hyi (ENSSAUG00010019382)	ENSSAUG00010019381	ENSSAUG00010019380	ENSSAUG00010019379	ptprfa (ENSSAUG00010013643)	ENSSAUG00010013603	ENSSAUG00010013602	cdh2 (ENSSAUG00010008405)	cherp (ENSSAUG00010008340)	ENSSAUG00010008333	dohh (ENSSAUG00010008331)
Ballan wrasse	MODERN SPECIES	43	ENSLBEG00000010709	ankrd29 (ENSLBEG00000010797)	ENSLBEG00000010819	ENSLBEG00000010861	zgc:171480 (ENSLBEG00000010915)	ndufa11 (ENSLBEG00000010937)	ctns (ENSLBEG00000010945)	slc5a9 (ENSLBEG00000010966)	ENSLBEG00000010995	ptprfa (ENSLBEG00000011071)	hyi (ENSLBEG00000011314)	SZT2 (ENSLBEG00000011405)	ENSLBEG00000011562	ENSLBEG00000011587	DDX10 (ENSLBEG00000011602)	ENSLBEG00000011624 ##22	ENSLBEG00000011662
Pinecone sodierfish	MODERN SPECIES	18	ENSMMDG00005021291	ENSMMDG00005021297	ENSMMDG00005021332	MEP1B (ENSMMDG00005021333)	mep1ba (ENSMMDG00005021337)	MEP1B (ENSMMDG00005021343)	ARHGAP39 (ENSMMDG00005021351)	ENSMMDG00005021356	rad54l (ENSMMDG00005021382)	st3gal3a (ENSMMDG00005021615)	ENSMMDG00005021620	ptprfa (ENSMMDG00005021676)	hyi (ENSMMDG00005021718)	ENSMMDG00005021727	DDX10 (ENSMMDG00005021736)	TAF4B (ENSMMDG00005021761) ##22	ENSMMDG00005021766	ENSMMDG00005021770	aqp4 (ENSMMDG00005002791)	cdh2 (ENSMMDG00005003329)	ENSMMDG00005007692	ENSMMDG00005007694	dsc2l (ENSMMDG00005007697)	ENSMMDG00005007702	ENSMMDG00005007706	ENSMMDG00005007712	ENSMMDG00005007717	ENSMMDG00005007720	gjc4b (ENSMMDG00005007723)	ENSMMDG00005007724	ENSMMDG00005007727
Spotted gar	MODERN SPECIES	675	ENSLOCG00000006619	ENSLOCG00000006605	ENSLOCG00000006588	ENSLOCG00000006559	ENSLOCG00000006540	ttc39c (ENSLOCG00000006521)	ENSLOCG00000006503	ENSLOCG00000017817	ENSLOCG00000006489	OSBPL1A (ENSLOCG00000006462)	impact (ENSLOCG00000006429)	ENSLOCG00000006411	ZNF521 (ENSLOCG00000006396)	ss18 (ENSLOCG00000006375)	psma8 (ENSLOCG00000006356)	TAF4B (ENSLOCG00000006335) ##22	KCTD1 (ENSLOCG00000006322)	aqp4 (ENSLOCG00000006310)	ENSLOCG00000006272	cdh2 (ENSLOCG00000006252)	ENSLOCG00000006212	ASXL3 (ENSLOCG00000006197)	NOL4 (ENSLOCG00000006177)	dtna (ENSLOCG00000006152)	mapre2 (ENSLOCG00000006134)	ENSLOCG00000006110	SPIDR (ENSLOCG00000006093)	cebpd (ENSLOCG00000017816)	PRKDC (ENSLOCG00000006046)	mcm4 (ENSLOCG00000006026)	ube2v2 (ENSLOCG00000006012)
Reedfish	MODERN SPECIES	14	abhd3 (ENSECRG00000005433)	ESCO1 (ENSECRG00000005412)	greb1l (ENSECRG00000005353)	rock1 (ENSECRG00000005295)	usp14 (ENSECRG00000005197)	thoc1 (ENSECRG00000005147)	OSBPL1A (ENSECRG00000004879)	ENSECRG00000004834	impact (ENSECRG00000004821)	ENSECRG00000004810	ZNF521 (ENSECRG00000004785)	ENSECRG00000004751	ENSECRG00000004745	ENSECRG00000004741	psma8 (ENSECRG00000004585)	TAF4B (ENSECRG00000004492) ##22	ENSECRG00000004475	aqp4 (ENSECRG00000004461)	CHST9 (ENSECRG00000004450)	cdh2 (ENSECRG00000001506)	ENSECRG00000001132	dsc2l (ENSECRG00000001086)	DSG4 (ENSECRG00000001006)	TTR (ENSECRG00000006316)	B4GALT6 (ENSECRG00000006307)	SBSPON (ENSECRG00000006293)	TERF1 (ENSECRG00000006277)	KCNB2 (ENSECRG00000006266)	ENSECRG00000006258	trpa1a (ENSECRG00000006244)	MSC (ENSECRG00000006231)
Elephant shark	MODERN SPECIES	1522	ENSCMIG00000004320	ENSCMIG00000004293	ttc39c (ENSCMIG00000004231)	ENSCMIG00000004203	ENSCMIG00000004200	ENSCMIG00000004197	ENSCMIG00000004174	ENSCMIG00000004156	ENSCMIG00000004145	ENSCMIG00000004137	ENSCMIG00000004125	ENSCMIG00000004116	ZNF521 (ENSCMIG00000004113)	ss18 (ENSCMIG00000004083)	psma8 (ENSCMIG00000004051)	ENSCMIG00000004039 ##22	ENSCMIG00000004036	KCTD1 (ENSCMIG00000004032)	AQP4 (ENSCMIG00000003851)	CHST9 (ENSCMIG00000003762)	cdh2 (ENSCMIG00000003589)	ENSCMIG00000003471	VPS13B (ENSCMIG00000003443)	osr2 (ENSCMIG00000003392)	STK3 (ENSCMIG00000002976)	KCNS2 (ENSCMIG00000002790)	NIPAL2 (ENSCMIG00000002786)	POP1 (ENSCMIG00000002779)	rida (ENSCMIG00000002755)	rpl30 (ENSCMIG00000002733)	MATN2 (ENSCMIG00000002718)