Hystricomorpha	ANCESTRAL SPECIES	32	ENSGT00400000022086.a	ENSGT00510000048348	ENSGT00940000157008	ENSGT00390000009127 #7	ENSGT00940000156182 #8	ENSGT00940000153902.a #9	ENSGT00940000155638 #11	ENSGT00950000182917.b #12	ENSGT00390000000444 #14	ENSGT00940000155295 #15	ENSGT00390000017571 #16	ENSGT00940000162118 #17	ENSGT00940000159287 #18	ENSGT00940000156352 #19	ENSGT00940000160354 #21	ENSGT00390000011620.a.a.a #22	ENSGT00940000156453.a #23	ENSGT00940000156037.a #24	ENSGT00940000160563 #25	ENSGT00940000155981 #26	ENSGT01030000234624.a.a.b #31	ENSGT01030000234624.a.a.a #32	ENSGT01030000234624.a.b #33	ENSGT01030000234624.b.a.b.a.b #34	ENSGT01030000234624.b.a.b.b #35	ENSGT01030000234624.b.a.b.a.a #36	ENSGT01030000234624.b.a.a #37	ENSGT00940000153229.A.a.b	ENSGT00940000158138	ENSGT00390000000568	ENSGT00950000182909.b.a.b
Naked mole-rat female	MODERN SPECIES	9	RMC1 (ENSHGLG00000009136) #7	NPC1 (ENSHGLG00000004320) #8	ANKRD29 (ENSHGLG00000003687) #9	ENSHGLG00000047717 #10	LAMA3 (ENSHGLG00000007164) #11	TTC39C (ENSHGLG00000004150) #12	ENSHGLG00000033917 #13	ENSHGLG00000007031 #14	OSBPL1A (ENSHGLG00000005475) #15	IMPACT (ENSHGLG00000032618) #16	ENSHGLG00000043231 #17	ZNF521 (ENSHGLG00000003785) #18	SS18 (ENSHGLG00000007496) #19	ENSHGLG00000020165 #20	PSMA8 (ENSHGLG00000009316) #21	TAF4B (ENSHGLG00000007544) #22	KCTD1 (ENSHGLG00000018260) #23	AQP4 (ENSHGLG00000039169) #24	CHST9 (ENSHGLG00000042304) #25	ENSHGLG00000007487 #26	ENSHGLG00000040245 #27	ENSHGLG00000004019 #28	ENSHGLG00000049706 #29	ENSHGLG00000042691 #30	ENSHGLG00000018510 #31	DSC2 (ENSHGLG00000018208) #32	DSC1 (ENSHGLG00000007182) #33	DSG1 (ENSHGLG00000003726) #34	DSG4 (ENSHGLG00000007440) #35	DSG3 (ENSHGLG00000033832) #36	DSG2 (ENSHGLG00000018540) #37
Hystricomorpha_a	ANCESTRAL SPECIES	26	ENSGT00400000022086.a	ENSGT00510000048348	ENSGT00940000157008	ENSGT00390000009127 #7	ENSGT00940000156182 #8	ENSGT00940000153902.a #9	ENSGT00940000155638 #11	ENSGT00950000182917.b #12	ENSGT00390000000444 #14	ENSGT00940000155295 #15	ENSGT00390000017571 #16	ENSGT00940000162118 #17	ENSGT00940000159287 #18	ENSGT00940000156352 #19	ENSGT00940000160354 #21	ENSGT00390000011620.a.a.a #22	ENSGT00940000156453.a #23	ENSGT00940000156037.a #24	ENSGT00940000160563 #25	ENSGT00940000155981 #26	ENSGT01030000234624.a.a.b #31	ENSGT01030000234624.a.a.a #32	ENSGT01030000234624.a.b #33	ENSGT01030000234624.b.a.b.a.b #34	ENSGT01030000234624.b.a.b.b #35	ENSGT01030000234624.b.a.b.a.a #36	ENSGT01030000234624.b.a.a #37	ENSGT00940000153229.A.a.b	ENSGT00940000158138	ENSGT00390000000568	ENSGT00950000182909.b.a.b
Hystricomorpha_b	ANCESTRAL SPECIES	21	ENSGT00400000022086.a	ENSGT00510000048348	ENSGT00940000157008	ENSGT00390000009127 #7	ENSGT00940000156182 #8	ENSGT00940000153902.a #9	ENSGT00940000155638 #11	ENSGT00950000182917.b #12	ENSGT00390000000444 #14	ENSGT00940000155295 #15	ENSGT00390000017571 #16	ENSGT00940000162118 #17	ENSGT00940000159287 #18	ENSGT00940000156352 #19	ENSGT00940000160354 #21	ENSGT00390000011620.a.a.a #22	ENSGT00940000156453.a #23	ENSGT00940000156037.a #24	ENSGT00940000160563 #25	ENSGT00940000155981 #26	ENSGT01030000234624.a.a.b #31	ENSGT01030000234624.a.a.a #32	ENSGT01030000234624.a.b #33	ENSGT01030000234624.b.a.b.a.b #34	ENSGT01030000234624.b.a.b.b #35	ENSGT01030000234624.b.a.b.a.a #36	ENSGT01030000234624.b.a.a #37	ENSGT00940000153229.A.a.b	ENSGT00940000158138	ENSGT00390000000568	ENSGT00950000182909.b.a.b
Long-tailed chinchilla	MODERN SPECIES	109	CABLES1 (ENSCLAG00000009135)	TMEM241 (ENSCLAG00000008159)	RIOK3 (ENSCLAG00000006767)	RMC1 (ENSCLAG00000007215) #7	NPC1 (ENSCLAG00000008539) #8	ENSCLAG00000009107 #9	ENSCLAG00000010376 #11	TTC39C (ENSCLAG00000012781) #12	ENSCLAG00000015684 #14	OSBPL1A (ENSCLAG00000011248) #15	IMPACT (ENSCLAG00000008879) #16	HRH4 (ENSCLAG00000009200) #17	ZNF521 (ENSCLAG00000010565) #18	SS18 (ENSCLAG00000012381) #19	PSMA8 (ENSCLAG00000009449) #21	TAF4B (ENSCLAG00000006974) #22	KCTD1 (ENSCLAG00000007823) #23	CHST9 (ENSCLAG00000008170) #25	CDH2 (ENSCLAG00000015205) #26	ENSCLAG00000016416	DSC3 (ENSCLAG00000016462) #31	DSC2 (ENSCLAG00000010145) #32	DSC1 (ENSCLAG00000012931) #33	DSG1 (ENSCLAG00000009520) #34	DSG4 (ENSCLAG00000014083) #35	DSG3 (ENSCLAG00000014163) #36	ENSCLAG00000012614 #37	TTR (ENSCLAG00000016064)	B4GALT6 (ENSCLAG00000016196)	TRAPPC8 (ENSCLAG00000016681)	RNF125 (ENSCLAG00000008643)
Degu	MODERN SPECIES	44												ENSODEG00000018302	ZNF521 (ENSODEG00000018410) #18	SS18 (ENSODEG00000018466) #19	PSMA8 (ENSODEG00000018364) #21	TAF4B (ENSODEG00000018462) #22	ENSODEG00000020494	KCTD1 (ENSODEG00000018447) #23	AQP4 (ENSODEG00000018294) #24	CHST9 (ENSODEG00000018320) #25	CDH2 (ENSODEG00000018382) #26	ENSODEG00000020488	DSC3 (ENSODEG00000018293) #31	DSC2 (ENSODEG00000018413) #32	DSC1 (ENSODEG00000018325) #33	DSG1 (ENSODEG00000018310) #34	DSG4 (ENSODEG00000018468) #35	DSG3 (ENSODEG00000018316) #36	ENSODEG00000018312 #37	TTR (ENSODEG00000018347)	B4GALT6 (ENSODEG00000018324)
Guinea pig	MODERN SPECIES	14	CABLES1 (ENSCPOG00000010935)	ENSCPOG00000007986	RIOK3 (ENSCPOG00000007991)	RMC1 (ENSCPOG00000006222) #7	NPC1 (ENSCPOG00000006230) #8	ANKRD29 (ENSCPOG00000007611) #9	LAMA3 (ENSCPOG00000007620) #11	TTC39C (ENSCPOG00000025455) #12	CABYR (ENSCPOG00000008281) #14	OSBPL1A (ENSCPOG00000008285) #15	IMPACT (ENSCPOG00000035662) #16	HRH4 (ENSCPOG00000001943) #17	ZNF521 (ENSCPOG00000015173) #18	SS18 (ENSCPOG00000004706) #19	PSMA8 (ENSCPOG00000012268) #21	TAF4B (ENSCPOG00000001414) #22	ENSCPOG00000003866 #23	AQP4 (ENSCPOG00000004446) #24	CHST9 (ENSCPOG00000010439) #25	CDH2 (ENSCPOG00000012391) #26	DSC2 (ENSCPOG00000005506) #32	DSC1 (ENSCPOG00000038286) #33	DSG1 (ENSCPOG00000005375) #34	DSG4 (ENSCPOG00000005388) #35	ENSCPOG00000036894 #36	DSG2 (ENSCPOG00000038318) #37	TTR (ENSCPOG00000012845)	B4GALT6 (ENSCPOG00000039163)	TRAPPC8 (ENSCPOG00000012560)	RNF125 (ENSCPOG00000033178)	RNF138 (ENSCPOG00000003463)