Hystricomorpha	ANCESTRAL SPECIES	1	ENSGT00390000014309	ENSGT00390000013319	ENSGT00940000155278.n	ENSGT00940000153820.b.b #7	ENSGT00940000154115.c.b #8	ENSGT00940000155571.B #9	ENSGT00950000183027.a.b #12	ENSGT00950000183054.b #13	ENSGT00950000182924.A.b.a.a #15	ENSGT00940000158983 #16	ENSGT00390000007683 #17	ENSGT00940000156999 #18	ENSGT00940000156237 #19	ENSGT00940000156481 #20	ENSGT01050000244971.C.d #21	ENSGT01030000234543.D #22	ENSGT00940000158184 #23	ENSGT00390000014320 #24	ENSGT00940000157372 #25	ENSGT00940000160190 #27	ENSGT00940000154628.B #29	ENSGT00940000162682.A.a.b	ENSGT00940000155540.b.b #30	ENSGT00950000182869.e.a.a.f.b #31	ENSGT00390000004409 #32	ENSGT00390000014618.a #36	ENSGT00940000153289.a.a.a	ENSGT00940000154935	ENSGT00940000155303	ENSGT00930000151028	ENSGT00390000000153.l.b.c.a
Naked mole-rat female	MODERN SPECIES	4	MSS51 (ENSHGLG00000035480) #7	PPP3CB (ENSHGLG00000017090) #8	USP54 (ENSHGLG00000017101) #9	ENSHGLG00000049336 #10	ENSHGLG00000041485 #11	MYOZ1 (ENSHGLG00000014747) #12	SYNPO2L (ENSHGLG00000036525) #13	ENSHGLG00000042155 #14	ENSHGLG00000014584 #15	FUT11 (ENSHGLG00000014614) #16	CHCHD1 (ENSHGLG00000037728) #17	ZSWIM8 (ENSHGLG00000014670) #18	NDST2 (ENSHGLG00000018051) #19	CAMK2G (ENSHGLG00000018079) #20	PLAU (ENSHGLG00000018090) #21	VCL (ENSHGLG00000016883) #22	AP3M1 (ENSHGLG00000016902) #23	ADK (ENSHGLG00000016921) #24	KAT6B (ENSHGLG00000016932) #25	ENSHGLG00000049626 #26	DUSP29 (ENSHGLG00000034915) #27	ENSHGLG00000040730 #28	DUSP13 (ENSHGLG00000016966) #29	SAMD8 (ENSHGLG00000016978) #30	VDAC2 (ENSHGLG00000017003) #31	ENSHGLG00000017622 #32	ENSHGLG00000032424 #33	ENSHGLG00000038436 #34	ENSHGLG00000017721 #35	ENSHGLG00000012957 #36	ENSHGLG00000043730 #37
Hystricomorpha_a	ANCESTRAL SPECIES	3	ENSGT00390000014309	ENSGT00390000013319	ENSGT00940000155278.n	ENSGT00940000153820.b.b #7	ENSGT00940000154115.c.b #8	ENSGT00940000155571.B #9	ENSGT00950000183027.a.b #12	ENSGT00950000183054.b #13	ENSGT00950000182924.A.b.a.a #15	ENSGT00940000158983 #16	ENSGT00390000007683 #17	ENSGT00940000156999 #18	ENSGT00940000156237 #19	ENSGT00940000156481 #20	ENSGT01050000244971.C.d #21	ENSGT01030000234543.D #22	ENSGT00940000158184 #23	ENSGT00390000014320 #24	ENSGT00940000157372 #25	ENSGT00940000160190 #27	ENSGT00940000154628.B #29	ENSGT00940000162682.A.a.b	ENSGT00940000155540.b.b #30	ENSGT00950000182869.e.a.a.f.b #31	ENSGT00390000004409 #32	ENSGT00390000014618.a #36	ENSGT00940000153289.a.a.a	ENSGT00940000154935	ENSGT00940000155303	ENSGT00930000151028	ENSGT00390000000153.l.b.c.a
Hystricomorpha_b	ANCESTRAL SPECIES	3	ENSGT00390000014309	ENSGT00390000013319	ENSGT00940000155278.n	ENSGT00940000153820.b.b #7	ENSGT00940000154115.c.b #8	ENSGT00940000155571.B #9	ENSGT00950000183027.a.b #12	ENSGT00950000183054.b #13	ENSGT00950000182924.A.b.a.a #15	ENSGT00940000158983 #16	ENSGT00390000007683 #17	ENSGT00940000156999 #18	ENSGT00940000156237 #19	ENSGT00940000156481 #20	ENSGT01050000244971.C.d #21	ENSGT01030000234543.D #22	ENSGT00940000158184 #23	ENSGT00390000014320 #24	ENSGT00940000157372 #25	ENSGT00940000160190 #27	ENSGT00940000154628.B #29	ENSGT00940000162682.A.a.b	ENSGT00940000155540.b.b #30	ENSGT00950000182869.e.a.a.f.b #31	ENSGT00390000004409 #32	ENSGT00390000014618.a #36	ENSGT00940000153289.a.a.a	ENSGT00940000154935	ENSGT00940000155303	ENSGT00930000151028	ENSGT00390000000153.l.b.c.a
Long-tailed chinchilla	MODERN SPECIES	144	ENSCLAG00000009460	ENSCLAG00000011543	ENSCLAG00000011356 #7	ENSCLAG00000012120	PPP3CB (ENSCLAG00000016643) #8	USP54 (ENSCLAG00000010343) #9	MYOZ1 (ENSCLAG00000009444) #12	SYNPO2L (ENSCLAG00000011472) #13	ENSCLAG00000009991 #15	FUT11 (ENSCLAG00000009545) #16	CHCHD1 (ENSCLAG00000012183) #17	ZSWIM8 (ENSCLAG00000011062) #18	NDST2 (ENSCLAG00000010841) #19	CAMK2G (ENSCLAG00000009687) #20	PLAU (ENSCLAG00000010993) #21	VCL (ENSCLAG00000009895) #22	AP3M1 (ENSCLAG00000010102) #23	ADK (ENSCLAG00000011462) #24	KAT6B (ENSCLAG00000012921) #25	DUSP29 (ENSCLAG00000010412) #27	DUSP13 (ENSCLAG00000009900) #29	ENSCLAG00000009800	SAMD8 (ENSCLAG00000009370) #30	ENSCLAG00000012366	COMTD1 (ENSCLAG00000010142) #32	VDAC2 (ENSCLAG00000009384) #31	ZNF503 (ENSCLAG00000013608) #36	LRMDA (ENSCLAG00000010070)	KCNMA1 (ENSCLAG00000014554)	DLG5 (ENSCLAG00000014620)	POLR3A (ENSCLAG00000009629)
Degu	MODERN SPECIES	46	ENSODEG00000014292	ANXA7 (ENSODEG00000014048)	ENSODEG00000014712 #7	ENSODEG00000014436	USP54 (ENSODEG00000014254) #9	MYOZ1 (ENSODEG00000015038) #12	SYNPO2L (ENSODEG00000014351) #13	ENSODEG00000020238	ENSODEG00000014996 #15	FUT11 (ENSODEG00000015479) #16	CHCHD1 (ENSODEG00000013911) #17	ZSWIM8 (ENSODEG00000015594) #18	NDST2 (ENSODEG00000016187) #19	CAMK2G (ENSODEG00000015036) #20	PLAU (ENSODEG00000015271) #21	VCL (ENSODEG00000015408) #22	ENSODEG00000015093 #23	ENSODEG00000015430 #24	ENSODEG00000020272 #25	ENSODEG00000014295 #25	DUSP29 (ENSODEG00000014367) #27	DUSP13 (ENSODEG00000014816) #29	SAMD8 (ENSODEG00000015010) #30	VDAC2 (ENSODEG00000014433) #31	COMTD1 (ENSODEG00000015636) #32	ENSODEG00000014826	ZNF503 (ENSODEG00000015000) #36	LRMDA (ENSODEG00000015494)	KCNMA1 (ENSODEG00000016449)	DLG5 (ENSODEG00000015060)	POLR3A (ENSODEG00000015146)
Guinea pig	MODERN SPECIES	15	MRPS16 (ENSCPOG00000025500)	CFAP70 (ENSCPOG00000010685)	ANXA7 (ENSCPOG00000002542)	MSS51 (ENSCPOG00000020857) #7	PPP3CB (ENSCPOG00000008013) #8	USP54 (ENSCPOG00000008020) #9	MYOZ1 (ENSCPOG00000003392) #12	SYNPO2L (ENSCPOG00000022018) #13	ENSCPOG00000003394 #15	FUT11 (ENSCPOG00000003400) #16	CHCHD1 (ENSCPOG00000030461) #17	ZSWIM8 (ENSCPOG00000020625) #18	NDST2 (ENSCPOG00000003403) #19	CAMK2G (ENSCPOG00000000914) #20	PLAU (ENSCPOG00000000920) #21	VCL (ENSCPOG00000005058) #22	AP3M1 (ENSCPOG00000005068) #23	ADK (ENSCPOG00000004488) #24	KAT6B (ENSCPOG00000006544) #25	DUSP29 (ENSCPOG00000022980) #27	DUSP13 (ENSCPOG00000006560) #29	SAMD8 (ENSCPOG00000031357) #30	VDAC2 (ENSCPOG00000002752) #31	COMTD1 (ENSCPOG00000002758) #32	ZNF503 (ENSCPOG00000010319) #36	LRMDA (ENSCPOG00000008454)	KCNMA1 (ENSCPOG00000011100)	DLG5 (ENSCPOG00000005329)	POLR3A (ENSCPOG00000022387)	RPS24 (ENSCPOG00000020096)	ZMIZ1 (ENSCPOG00000002268)