Rodentia_A	ANCESTRAL SPECIES	24	ENSGT00530000063854	ENSGT00390000014635	ENSGT00940000154718	ENSGT00940000159744 #7	ENSGT00940000158247 #8	ENSGT00730000111168 #9	ENSGT00390000006284 #10	ENSGT00940000158277 #13	ENSGT00940000163344 #14	ENSGT00940000156295 #15	ENSGT00940000160324 #17	ENSGT00940000155249 #18	ENSGT00940000154953 #19	ENSGT00440000037338 #20	ENSGT00390000002565 #21	ENSGT00950000183174.B.a #22	ENSGT00940000157090 #23	ENSGT00390000004827 #24	ENSGT00940000160288	ENSGT00950000183201.b.b.a #25	ENSGT00390000008828 #26	ENSGT00950000182915.a.a.b #27	ENSGT00940000161998 #28	ENSGT00940000156589 #29	ENSGT00940000160382 #30	ENSGT00910000148499	ENSGT00940000157878 #31	ENSGT00940000156171 #32	ENSGT00390000017043 #33	ENSGT00390000016264 #34	ENSGT00940000157587 #35
Sciuridae	ANCESTRAL SPECIES	38	ENSGT00530000063854	ENSGT00390000014635	ENSGT00940000154718	ENSGT00940000159744 #7	ENSGT00940000158247 #8	ENSGT00730000111168 #9	ENSGT00390000006284 #10	ENSGT00940000158277 #13	ENSGT00940000163344 #14	ENSGT00940000156295 #15	ENSGT00940000160324.d #17	ENSGT00940000155249 #18	ENSGT00940000154953 #19	ENSGT00440000037338 #20	ENSGT00390000002565 #21	ENSGT00950000183174.B.a #22	ENSGT00940000157090 #23	ENSGT00390000004827 #24	ENSGT00940000160288	ENSGT00950000183201.b.b.a #25	ENSGT00390000008828 #26	ENSGT00950000182915.a.a.b #27	ENSGT00940000161998 #28	ENSGT00940000156589 #29	ENSGT00940000160382 #30	ENSGT00910000148499	ENSGT00940000157878 #31	ENSGT00940000156171 #32	ENSGT00390000017043 #33	ENSGT00390000016264 #34	ENSGT00940000157587 #35
Eurasian red squirrel	MODERN SPECIES	18	ENSSVLG00005006219 #7	JADE1 (ENSSVLG00005006252) #8	SCLT1 (ENSSVLG00005006330) #9	C4orf33 (ENSSVLG00005006644) #10	ENSSVLG00005006687 #11	ENSSVLG00005006725 #12	PCDH10 (ENSSVLG00005006755) #13	PABPC4L (ENSSVLG00005006805) #14	PCDH18 (ENSSVLG00005006821) #15	ENSSVLG00005006915 #16	SLC7A11 (ENSSVLG00005006943) #17	NOCT (ENSSVLG00005007008) #18	ENSSVLG00005007043 #19	MGARP (ENSSVLG00005007132) #20	NDUFC1 (ENSSVLG00005007177) #21	NAA15 (ENSSVLG00005007200) #22	RAB33B (ENSSVLG00005007228) #23	SETD7 (ENSSVLG00005007262) #24	MAML3 (ENSSVLG00005007329) #25	SCOC (ENSSVLG00005007378) #26	CLGN (ENSSVLG00005007446) #27	MGAT4D (ENSSVLG00005007541) #28	ELMOD2 (ENSSVLG00005007698) #29	UCP1 (ENSSVLG00005007755) #30	TBC1D9 (ENSSVLG00005007825) #31	RNF150 (ENSSVLG00005007968) #32	ZNF330 (ENSSVLG00005008101) #33	IL15 (ENSSVLG00005008140) #34	INPP4B (ENSSVLG00005008272) #35	USP38 (ENSSVLG00005008534) #36	GAB1 (ENSSVLG00005008645) #37
Marmotini	ANCESTRAL SPECIES	45	ENSGT00530000063854	ENSGT00390000014635	ENSGT00940000154718.vb.a	ENSGT00940000159744 #7	ENSGT00940000158247 #8	ENSGT00730000111168 #9	ENSGT00390000006284 #10	ENSGT00940000158277 #13	ENSGT00940000163344 #14	ENSGT00940000156295 #15	ENSGT00940000160324.d #17	ENSGT00940000155249 #18	ENSGT00940000154953 #19	ENSGT00440000037338 #20	ENSGT00390000002565 #21	ENSGT00950000183174.B.a #22	ENSGT00940000157090 #23	ENSGT00390000004827 #24	ENSGT00940000160288	ENSGT00950000183201.b.b.a #25	ENSGT00390000008828 #26	ENSGT00950000182915.a.a.b #27	ENSGT00940000161998 #28	ENSGT00940000156589 #29	ENSGT00940000160382 #30	ENSGT00910000148499	ENSGT00940000157878 #31	ENSGT00940000156171 #32	ENSGT00390000017043 #33	ENSGT00390000016264 #34	ENSGT00940000157587 #35
Marmotini_b	ANCESTRAL SPECIES	115								ENSGT00940000158277 #13	ENSGT00940000163344 #14	ENSGT00940000156295 #15	ENSGT00940000160324.d #17	ENSGT00940000155249 #18	ENSGT00940000154953 #19	ENSGT00440000037338 #20	ENSGT00390000002565 #21	ENSGT00950000183174.B.a #22	ENSGT00940000157090 #23	ENSGT00390000004827 #24	ENSGT00940000160288	ENSGT00950000183201.b.b.a #25	ENSGT00390000008828.bb.a.a #26	ENSGT00390000008828.bb.a.b #26	ENSGT00950000182915.a.a.b #27	ENSGT00940000161998 #28	ENSGT00940000156589 #29	ENSGT00940000160382 #30	ENSGT00910000148499	ENSGT00940000157878 #31	ENSGT00940000156171 #32	ENSGT00390000017043 #33	ENSGT00390000016264 #34
Squirrel	MODERN SPECIES	135											SLC7A11 (ENSSTOG00000009749) #17	NOCT (ENSSTOG00000014818) #18	ELF2 (ENSSTOG00000025317) #19	MGARP (ENSSTOG00000025833) #20	NDUFC1 (ENSSTOG00000023590) #21	NAA15 (ENSSTOG00000015163) #22	RAB33B (ENSSTOG00000027511) #23	SETD7 (ENSSTOG00000004420) #24	MGST2 (ENSSTOG00000004437)	MAML3 (ENSSTOG00000004454) #25	ENSSTOG00000028529 #26	CLGN (ENSSTOG00000003055) #27	MGAT4D (ENSSTOG00000030895) #28	ELMOD2 (ENSSTOG00000022401) #29	UCP1 (ENSSTOG00000003104) #30	TBC1D9 (ENSSTOG00000001453) #31	RNF150 (ENSSTOG00000029908) #32	ZNF330 (ENSSTOG00000002498) #33	IL15 (ENSSTOG00000005776) #34	INPP4B (ENSSTOG00000005582) #35	USP38 (ENSSTOG00000025902) #36
Arctic ground squirrel	MODERN SPECIES	43								PCDH10 (ENSUPAG00010012531) #13	PABPC4L (ENSUPAG00010012516) #14	PCDH18 (ENSUPAG00010012505) #15	SLC7A11 (ENSUPAG00010012469) #17	NOCT (ENSUPAG00010012453) #18	ELF2 (ENSUPAG00010012300) #19	MGARP (ENSUPAG00010012289) #20	ENSUPAG00010012276 #21	NAA15 (ENSUPAG00010012214) #22	RAB33B (ENSUPAG00010012211) #23	SETD7 (ENSUPAG00010012201) #24	MGST2 (ENSUPAG00010012193)	MAML3 (ENSUPAG00010012184) #25	ENSUPAG00010012174 #26	CLGN (ENSUPAG00010012156) #27	MGAT4D (ENSUPAG00010012143) #28	ELMOD2 (ENSUPAG00010012136) #29	UCP1 (ENSUPAG00010012125) #30	ENSUPAG00010012123	TBC1D9 (ENSUPAG00010012079) #31	RNF150 (ENSUPAG00010012043) #32	ZNF330 (ENSUPAG00010012039) #33	IL15 (ENSUPAG00010012021) #34	INPP4B (ENSUPAG00010011818) #35
Alpin marmot	MODERN SPECIES	5	ENSMMMG00000014539 #7	JADE1 (ENSMMMG00000014553) #8	SCLT1 (ENSMMMG00000014616) #9	C4orf33 (ENSMMMG00000014646) #10	ENSMMMG00000014709	PCDH10 (ENSMMMG00000014721) #13	PABPC4L (ENSMMMG00000014776) #14	ENSMMMG00000014781	ENSMMMG00000014811	PCDH18 (ENSMMMG00000014826) #15	SLC7A11 (ENSMMMG00000014855) #17	NOCT (ENSMMMG00000014877) #18	ELF2 (ENSMMMG00000014882) #19	MGARP (ENSMMMG00000014954) #20	NDUFC1 (ENSMMMG00000014960) #21	NAA15 (ENSMMMG00000014966) #22	RAB33B (ENSMMMG00000014993) #23	SETD7 (ENSMMMG00000015001) #24	MGST2 (ENSMMMG00000015033)	MAML3 (ENSMMMG00000015052) #25	SCOC (ENSMMMG00000015060) #26	ENSMMMG00000015084 #27	GLI2 (ENSMMMG00000015099)	TFCP2L1 (ENSMMMG00000015130)	CLASP1 (ENSMMMG00000015185)	ENSMMMG00000020184	TSN (ENSMMMG00000020190)	ENSMMMG00000020207	ENSMMMG00000020240	ENSMMMG00000020302	ENSMMMG00000020311
Hystricomorpha	ANCESTRAL SPECIES	38	ENSGT00390000014635	ENSGT00940000154718	ENSGT00940000159744 #7	ENSGT00940000158247 #8	ENSGT00730000111168 #9	ENSGT00390000006284 #10	ENSGT00940000158277 #13	ENSGT00940000163344 #14	ENSGT00940000156295 #15	ENSGT00940000160324 #17	ENSGT00940000155249 #18	ENSGT00940000154953 #19	ENSGT00990000203987	ENSGT00440000037338 #20	ENSGT00390000002565 #21	ENSGT00950000183174.B.a #22	ENSGT00940000157090 #23	ENSGT00390000004827 #24	ENSGT00940000160288	ENSGT00950000183201.b.b.a #25	ENSGT00390000008828 #26	ENSGT00950000182915.a.a.b #27	ENSGT00940000161998 #28	ENSGT00940000156589 #29	ENSGT00940000160382 #30	ENSGT00940000158472	ENSGT00940000155201.n	ENSGT01100000263512.a.a.b.d	ENSGT00390000008611	ENSGT00940000160339	ENSGT00390000011932
Hystricomorpha_a	ANCESTRAL SPECIES	34	ENSGT00940000156316	ENSGT00530000063854	ENSGT00390000014635	ENSGT00940000154718	ENSGT00940000159744 #7	ENSGT00940000158247 #8	ENSGT00730000111168 #9	ENSGT00390000006284 #10	ENSGT00940000158277 #13	ENSGT00940000163344 #14	ENSGT00940000156295 #15	ENSGT00940000160324 #17	ENSGT00940000155249 #18	ENSGT00940000154953 #19	ENSGT00390000002565 #21	ENSGT00950000183174.B.a #22	ENSGT00940000157090 #23	ENSGT00390000004827 #24	ENSGT00940000160288	ENSGT00950000183201.b.b.a #25	ENSGT00390000008828 #26	ENSGT00950000182915.a.a.b #27	ENSGT00940000161998 #28	ENSGT00940000156589 #29	ENSGT00940000160382 #30	ENSGT00940000158472	ENSGT00940000155201.n	ENSGT01100000263512.a.a.b.d	ENSGT00390000008611	ENSGT00940000160339	ENSGT00390000011932
Hystricomorpha_b	ANCESTRAL SPECIES	75	ENSGT00940000156316	ENSGT00530000063854	ENSGT00390000014635	ENSGT00940000154718	ENSGT00940000159744 #7	ENSGT00940000158247 #8	ENSGT00730000111168 #9	ENSGT00390000006284 #10	ENSGT00940000158277 #13	ENSGT00940000163344 #14	ENSGT00940000156295 #15	ENSGT00940000160324 #17	ENSGT00940000155249 #18	ENSGT00940000154953 #19	ENSGT00390000002565 #21	ENSGT00950000183174.B.a #22	ENSGT00940000157090 #23	ENSGT00390000004827 #24	ENSGT00940000160288	ENSGT00950000183201.b.b.a #25	ENSGT00390000008828 #26	ENSGT00950000182915.a.a.b #27	ENSGT00940000161998 #28	ENSGT00940000156589 #29	ENSGT00940000160382 #30	ENSGT00940000158472	ENSGT00940000155201.n	ENSGT01100000263512.a.a.b.d	ENSGT00390000008611	ENSGT00940000160339	ENSGT00390000011932
Long-tailed chinchilla	MODERN SPECIES	135	ENSCLAG00000006448	ENSCLAG00000005929	ENSCLAG00000005409 #7	ENSCLAG00000005521	JADE1 (ENSCLAG00000003659) #8	SCLT1 (ENSCLAG00000003786) #9	C4orf33 (ENSCLAG00000003605) #10	ENSCLAG00000003063	PCDH10 (ENSCLAG00000005145) #13	PABPC4L (ENSCLAG00000017628) #14	PCDH18 (ENSCLAG00000005219) #15	SLC7A11 (ENSCLAG00000004373) #17	NOCT (ENSCLAG00000003384) #18	ELF2 (ENSCLAG00000007485) #19	NDUFC1 (ENSCLAG00000004430) #21	NAA15 (ENSCLAG00000003865) #22	RAB33B (ENSCLAG00000003133) #23	SETD7 (ENSCLAG00000005370) #24	MGST2 (ENSCLAG00000005175)	MAML3 (ENSCLAG00000004669) #25	SCOC (ENSCLAG00000006150) #26	CLGN (ENSCLAG00000007242) #27	MGAT4D (ENSCLAG00000006558) #28	ELMOD2 (ENSCLAG00000008217) #29	UCP1 (ENSCLAG00000007517) #30	PRMT9 (ENSCLAG00000006351)	TMEM184C (ENSCLAG00000006100)	EDNRA (ENSCLAG00000005819)	TTC29 (ENSCLAG00000004530)	POU4F2 (ENSCLAG00000004187)	SLC10A7 (ENSCLAG00000005576)
Degu	MODERN SPECIES	221								ENSODEG00000019032	PCDH18 (ENSODEG00000004124) #15	SLC7A11 (ENSODEG00000004109) #17	ENSODEG00000004079	ENSODEG00000003088	NOCT (ENSODEG00000003057) #18	ENSODEG00000003035	NDUFC1 (ENSODEG00000003018) #21	NAA15 (ENSODEG00000003007) #22	RAB33B (ENSODEG00000002979) #23	SETD7 (ENSODEG00000002938) #24	MGST2 (ENSODEG00000002892)	MAML3 (ENSODEG00000002854) #25	SCOC (ENSODEG00000002813) #26	CLGN (ENSODEG00000002785) #27	MGAT4D (ENSODEG00000002754) #28	ELMOD2 (ENSODEG00000002719) #29	UCP1 (ENSODEG00000002693) #30	ENSODEG00000018807	PRMT9 (ENSODEG00000002652)	TMEM184C (ENSODEG00000002628)	EDNRA (ENSODEG00000002616)
Guinea pig	MODERN SPECIES	7	MFSD8 (ENSCPOG00000015575)	ABHD18 (ENSCPOG00000030889)	ENSCPOG00000034668	ENSCPOG00000033974	PGRMC2 (ENSCPOG00000027001) #7	JADE1 (ENSCPOG00000002256) #8	SCLT1 (ENSCPOG00000002258) #9	C4orf33 (ENSCPOG00000034978) #10	PCDH10 (ENSCPOG00000031544) #13	PABPC4L (ENSCPOG00000033167) #14	PCDH18 (ENSCPOG00000003047) #15	SLC7A11 (ENSCPOG00000013036) #17	NOCT (ENSCPOG00000003827) #18	ELF2 (ENSCPOG00000009449) #19	NDUFC1 (ENSCPOG00000040190) #21	NAA15 (ENSCPOG00000013184) #22	RAB33B (ENSCPOG00000030742) #23	SETD7 (ENSCPOG00000039921) #24	MGST2 (ENSCPOG00000027305)	ENSCPOG00000001624 #25	SCOC (ENSCPOG00000032760) #26	CLGN (ENSCPOG00000006963) #27	ELMOD2 (ENSCPOG00000036772) #29	UCP1 (ENSCPOG00000001969) #30	PRMT9 (ENSCPOG00000009218)	TMEM184C (ENSCPOG00000009210)	EDNRA (ENSCPOG00000004559)	ENSCPOG00000040663	TTC29 (ENSCPOG00000007443)	POU4F2 (ENSCPOG00000013770)	SLC10A7 (ENSCPOG00000015391)
Naked mole-rat female	MODERN SPECIES	22	ENSHGLG00000003262	ENSHGLG00000034149	ENSHGLG00000020008	ENSHGLG00000041143	ENSHGLG00000039311	ENSHGLG00000010507 #15	ENSHGLG00000011287	SLC7A11 (ENSHGLG00000014666) #17	ENSHGLG00000005811	NOCT (ENSHGLG00000019383) #18	ELF2 (ENSHGLG00000039789) #19	ENSHGLG00000038060	ENSHGLG00000005918	ENSHGLG00000037172 #20	ENSHGLG00000006316 #21	NAA15 (ENSHGLG00000007395) #22	RAB33B (ENSHGLG00000038757) #23	ENSHGLG00000049841	SETD7 (ENSHGLG00000039947) #24	MGST2 (ENSHGLG00000040336)	MAML3 (ENSHGLG00000039990) #25	SCOC (ENSHGLG00000035798) #26	CLGN (ENSHGLG00000000153) #27	ELMOD2 (ENSHGLG00000043621) #29	ENSHGLG00000000166 #30	ENSHGLG00000000179	ENSHGLG00000000200	ENSHGLG00000048262	ENSHGLG00000044620	ENSHGLG00000001009 #31	ENSHGLG00000049997