Fungi/Metazoa group	DUPLICATION
Fungi/Metazoa group	ANCESTRAL SPECIES																	ENSGT00950000183174.B #22
Bilateria	ANCESTRAL SPECIES																	ENSGT00950000183174.B #22
Chordata	ANCESTRAL SPECIES																	ENSGT00950000183174.B #22
Vertebrata	ANCESTRAL SPECIES																	ENSGT00950000183174.B #22
Gnathostomata	DUPLICATION
Gnathostomata	ANCESTRAL SPECIES	100												ENSGT00940000158247 #8	ENSGT00730000111168 #9	ENSGT00390000006284 #10	ENSGT01030000235247	ENSGT00950000183174.B.a #22	ENSGT00390000002932	ENSGT00940000157090 #25	ENSGT00390000008183	ENSGT00390000004827 #27	ENSGT00940000160288 #30	ENSGT00390000008828 #32	ENSGT00950000182915.a.a.b #33	ENSGT00940000156526.b	ENSGT00940000156589 #35	ENSGT00940000160382 #36	ENSGT00940000157878 #37	ENSGT00940000156171	ENSGT00390000017043	ENSGT00940000156733	ENSGT00940000158403
Euteleostomi	ANCESTRAL SPECIES	13	ENSGT00390000014635	ENSGT00940000154718	ENSGT00940000159744 #7	ENSGT00940000158247 #8	ENSGT00730000111168 #9	ENSGT00390000006284 #10	ENSGT01030000234904	ENSGT00940000158277 #11	ENSGT00940000156295 #15	ENSGT00940000160324 #16	ENSGT00940000155249 #19	ENSGT00940000154953 #20	ENSGT00440000037338	ENSGT01030000235247	ENSGT00390000002565 #21	ENSGT00950000183174.B.a #22	ENSGT00390000002932	ENSGT00940000157090 #25	ENSGT00390000008183	ENSGT00390000004827 #27	ENSGT00940000160288 #30	ENSGT00950000183201.b.a.b ##31	ENSGT00390000008828 #32	ENSGT00950000182915.a.a.b #33	ENSGT00940000156526.b	ENSGT00940000182021	ENSGT00940000156589 #35	ENSGT00940000160382 #36	ENSGT00940000157878 #37	ENSGT00940000156171	ENSGT00390000017043
Sarcopterygii	ANCESTRAL SPECIES	18	ENSGT00530000063854	ENSGT00390000014635	ENSGT00940000154718	ENSGT00940000159744 #7	ENSGT00940000158247 #8	ENSGT00730000111168 #9	ENSGT00390000006284 #10	ENSGT00940000158277 #11	ENSGT00940000156295 #15	ENSGT00940000160324 #16	ENSGT00940000155249 #19	ENSGT00940000154953 #20	ENSGT00440000037338	ENSGT01030000235247	ENSGT00390000002565 #21	ENSGT00950000183174.B.a #22	ENSGT00390000002932	ENSGT00940000157090 #25	ENSGT00390000008183	ENSGT00390000004827 #27	ENSGT00940000160288 #30	ENSGT00950000183201.b.b.a #31	ENSGT00950000183201.b.a.b ##31	ENSGT00390000008828 #32	ENSGT00950000182915.a.a.b #33	ENSGT00940000182021	ENSGT00940000156589 #35	ENSGT00940000160382 #36	ENSGT00940000157878 #37	ENSGT00940000156171	ENSGT00390000017043
Tetrapoda	ANCESTRAL SPECIES	3	ENSGT00390000014635	ENSGT00940000154718	ENSGT00940000159744 #7	ENSGT00940000158247 #8	ENSGT00730000111168 #9	ENSGT00390000006284 #10	ENSGT01030000234904	ENSGT00940000158277 #11	ENSGT00940000156295 #15	ENSGT00940000160324 #16	ENSGT00940000155249 #19	ENSGT00940000154953 #20	ENSGT00440000037338	ENSGT01030000235247	ENSGT00390000002565 #21	ENSGT00950000183174.B.a #22	ENSGT00390000002932	ENSGT00940000157090 #25	ENSGT00390000008183	ENSGT00390000004827 #27	ENSGT00940000160288 #30	ENSGT00950000183201.b.b.a #31	ENSGT00950000183201.b.a.b ##31	ENSGT00390000008828 #32	ENSGT00950000182915.a.a.b #33	ENSGT00940000161998 #34	ENSGT00940000156589 #35	ENSGT00940000160382 #36	ENSGT00940000157878 #37	ENSGT00940000156171	ENSGT00390000017043
Amniota	ANCESTRAL SPECIES	2	ENSGT00940000154718	ENSGT00940000159744 #7	ENSGT00940000158247 #8	ENSGT00730000111168 #9	ENSGT00390000006284 #10	ENSGT01030000234904	ENSGT00940000158277 #11	ENSGT00940000156295 #15	ENSGT00940000160324 #16	ENSGT00940000155249 #19	ENSGT00940000154953 #20	ENSGT00990000203987	ENSGT00440000037338	ENSGT01030000235247	ENSGT00390000002565 #21	ENSGT00950000183174.B.a #22	ENSGT00390000002932	ENSGT00940000157090 #25	ENSGT00390000008183	ENSGT00390000004827 #27	ENSGT00940000160288 #30	ENSGT00950000183201.b.b.a #31	ENSGT00950000183201.b.a.b ##31	ENSGT00390000008828 #32	ENSGT00950000182915.a.a.b #33	ENSGT00940000161998 #34	ENSGT00940000156589 #35	ENSGT00940000160382 #36	ENSGT00940000157878 #37	ENSGT00940000156171	ENSGT00390000017043
Mammalia	ANCESTRAL SPECIES	1	ENSGT00530000063854	ENSGT00390000014635	ENSGT00940000154718	ENSGT00940000159744 #7	ENSGT00940000158247 #8	ENSGT00730000111168 #9	ENSGT00390000006284 #10	ENSGT00940000158277 #11	ENSGT00940000156295 #15	ENSGT00940000160324 #16	ENSGT00940000155249 #19	ENSGT00940000154953 #20	ENSGT00990000203987	ENSGT00440000037338	ENSGT00390000002565 #21	ENSGT00950000183174.B.a #22	ENSGT00390000002932	ENSGT00940000157090 #25	ENSGT00390000004827 #27	ENSGT00940000160288 #30	ENSGT00950000183201.b.b.a #31	ENSGT00950000183201.b.a.b ##31	ENSGT00390000008828 #32	ENSGT00950000182915.a.a.b #33	ENSGT00940000161998 #34	ENSGT00940000156589 #35	ENSGT00940000160382 #36	ENSGT00940000157878 #37	ENSGT00940000156171	ENSGT00390000017043	ENSGT00390000016264
Theria	ANCESTRAL SPECIES	6	ENSGT00530000063854	ENSGT00390000014635	ENSGT00940000154718	ENSGT00940000159744 #7	ENSGT00940000158247 #8	ENSGT00730000111168 #9	ENSGT00390000006284 #10	ENSGT00940000158277 #11	ENSGT00940000156295 #15	ENSGT00940000160324 #16	ENSGT00940000155249 #19	ENSGT00940000154953 #20	ENSGT00990000203987	ENSGT00440000037338	ENSGT00390000002565 #21	ENSGT00950000183174.B.a #22	ENSGT00390000002932	ENSGT00940000157090 #25	ENSGT00390000004827 #27	ENSGT00940000160288 #30	ENSGT00950000183201.b.b.a #31	ENSGT00950000183201.b.a.b ##31	ENSGT00390000008828 #32	ENSGT00950000182915.a.a.b #33	ENSGT00940000161998 #34	ENSGT00940000156589 #35	ENSGT00940000160382 #36	ENSGT00940000157878 #37	ENSGT00940000156171	ENSGT00390000017043	ENSGT00390000016264
Eutheria	ANCESTRAL SPECIES	2	ENSGT00530000063854	ENSGT00390000014635	ENSGT00940000154718	ENSGT00940000159744 #7	ENSGT00940000158247 #8	ENSGT00730000111168 #9	ENSGT00390000006284 #10	ENSGT00940000158277 #11	ENSGT00940000156295 #15	ENSGT00940000160324 #16	ENSGT00940000155249 #19	ENSGT00940000154953 #20	ENSGT00990000203987	ENSGT00440000037338	ENSGT00390000002565 #21	ENSGT00950000183174.B.a #22	ENSGT00940000157090 #25	ENSGT00390000004827 #27	ENSGT00940000160288 #30	ENSGT00950000183201.b.b.a #31	ENSGT00950000183201.b.a.b ##31	ENSGT00390000008828 #32	ENSGT00950000182915.a.a.b #33	ENSGT00940000161998 #34	ENSGT00940000156589 #35	ENSGT00940000160382 #36	ENSGT00940000157878 #37	ENSGT00940000156171	ENSGT00390000017043	ENSGT00390000016264	ENSGT00940000157587
Boreoeutheria	ANCESTRAL SPECIES	8	ENSGT00390000014635	ENSGT00940000154718	ENSGT00940000159744 #7	ENSGT00940000158247 #8	ENSGT00730000111168 #9	ENSGT00390000006284 #10	ENSGT00940000158277 #11	ENSGT00940000163344 #12	ENSGT00940000156295 #15	ENSGT00940000160324 #16	ENSGT00940000155249 #19	ENSGT00940000154953 #20	ENSGT00990000203987	ENSGT00440000037338	ENSGT00390000002565 #21	ENSGT00950000183174.B.a #22	ENSGT00940000157090 #25	ENSGT00390000004827 #27	ENSGT00940000160288 #30	ENSGT00950000183201.b.b.a #31	ENSGT00390000008828 #32	ENSGT00950000182915.a.a.b #33	ENSGT00940000161998 #34	ENSGT00940000156589 #35	ENSGT00940000160382 #36	ENSGT00910000148499	ENSGT00940000157878 #37	ENSGT00940000156171	ENSGT00390000017043	ENSGT00390000016264	ENSGT00940000157587
Euarchontoglires	ANCESTRAL SPECIES	9	ENSGT00390000014635	ENSGT00940000154718	ENSGT00940000159744 #7	ENSGT00940000158247 #8	ENSGT00730000111168 #9	ENSGT00390000006284 #10	ENSGT00940000158277 #11	ENSGT00940000163344 #12	ENSGT00940000156295 #15	ENSGT00940000160324 #16	ENSGT00940000155249 #19	ENSGT00940000154953 #20	ENSGT00990000203987	ENSGT00440000037338	ENSGT00390000002565 #21	ENSGT00950000183174.B.a #22	ENSGT00940000157090 #25	ENSGT00390000004827 #27	ENSGT00940000160288 #30	ENSGT00950000183201.b.b.a #31	ENSGT00390000008828 #32	ENSGT00950000182915.a.a.b #33	ENSGT00940000161998 #34	ENSGT00940000156589 #35	ENSGT00940000160382 #36	ENSGT00910000148499	ENSGT00940000157878 #37	ENSGT00940000156171	ENSGT00390000017043	ENSGT00390000016264	ENSGT00940000157587
Primates	ANCESTRAL SPECIES	10	ENSGT00530000063854	ENSGT00390000014635	ENSGT00940000154718	ENSGT00940000159744 #7	ENSGT00940000158247 #8	ENSGT00730000111168 #9	ENSGT00390000006284 #10	ENSGT00940000158277 #11	ENSGT00940000163344 #12	ENSGT00940000156295 #15	ENSGT00940000160324 #16	ENSGT00940000155249 #19	ENSGT00940000154953 #20	ENSGT00440000037338	ENSGT00390000002565 #21	ENSGT00950000183174.B.a #22	ENSGT00940000157090 #25	ENSGT00390000004827 #27	ENSGT00940000160288 #30	ENSGT00950000183201.b.b.a #31	ENSGT00390000008828 #32	ENSGT00950000182915.a.a.b #33	ENSGT00940000161998 #34	ENSGT00940000156589 #35	ENSGT00940000160382 #36	ENSGT00910000148499	ENSGT00940000157878 #37	ENSGT00940000156171	ENSGT00390000017043	ENSGT00390000016264	ENSGT00940000157587
Haplorrhini	ANCESTRAL SPECIES	20	ENSGT00530000063854	ENSGT00390000014635	ENSGT00940000154718	ENSGT00940000159744 #7	ENSGT00940000158247 #8	ENSGT00730000111168 #9	ENSGT00390000006284 #10	ENSGT00940000158277 #11	ENSGT00940000163344 #12	ENSGT00940000156295 #15	ENSGT00940000160324 #16	ENSGT00940000155249 #19	ENSGT00940000154953 #20	ENSGT00440000037338	ENSGT00390000002565 #21	ENSGT00950000183174.B.a #22	ENSGT00940000157090 #25	ENSGT00390000004827 #27	ENSGT00940000160288 #30	ENSGT00950000183201.b.b.a #31	ENSGT00390000008828 #32	ENSGT00950000182915.a.a.b #33	ENSGT00940000161998 #34	ENSGT00940000156589 #35	ENSGT00940000160382 #36	ENSGT00910000148499	ENSGT00940000157878 #37	ENSGT00940000156171	ENSGT00390000017043	ENSGT00390000016264	ENSGT00940000157587
Simiiformes	ANCESTRAL SPECIES	10	ENSGT00530000063854	ENSGT00390000014635	ENSGT00940000154718	ENSGT00940000159744 #7	ENSGT00940000158247 #8	ENSGT00730000111168 #9	ENSGT00390000006284 #10	ENSGT00940000158277 #11	ENSGT00940000163344 #12	ENSGT00940000156295 #15	ENSGT00940000160324 #16	ENSGT00940000155249 #19	ENSGT00940000154953 #20	ENSGT00440000037338	ENSGT00390000002565 #21	ENSGT00950000183174.B.a #22	ENSGT00910000147956 #23	ENSGT00940000157090 #25	ENSGT00390000004827 #27	ENSGT00910000146867 #29	ENSGT00940000160288 #30	ENSGT00950000183201.b.b.a #31	ENSGT00390000008828 #32	ENSGT00950000182915.a.a.b #33	ENSGT00940000161998 #34	ENSGT00940000156589 #35	ENSGT00940000160382 #36	ENSGT00910000148499	ENSGT00940000157878 #37	ENSGT00940000156171	ENSGT00390000017043
Catarrhini	ANCESTRAL SPECIES	14	ENSGT00530000063854	ENSGT00390000014635	ENSGT00940000154718	ENSGT00940000159744 #7	ENSGT00940000158247 #8	ENSGT00730000111168 #9	ENSGT00390000006284 #10	ENSGT00940000158277 #11	ENSGT00940000163344 #12	ENSGT00940000156295 #15	ENSGT00940000160324 #16	ENSGT00940000155249 #19	ENSGT00940000154953 #20	ENSGT00440000037338	ENSGT00390000002565 #21	ENSGT00950000183174.B.a #22	ENSGT00910000147956 #23	ENSGT00940000157090 #25	ENSGT00910000147140 #28	ENSGT00390000004827 #27	ENSGT00910000146867 #29	ENSGT00940000160288 #30	ENSGT00950000183201.b.b.a #31	ENSGT00390000007888.c.b.g.b	ENSGT00390000008828 #32	ENSGT00950000182915.a.a.b #33	ENSGT00940000161998 #34	ENSGT00940000156589 #35	ENSGT00940000160382 #36	ENSGT00910000148499	ENSGT00940000157878 #37
Hominoidea	ANCESTRAL SPECIES	10	ENSGT00530000063854	ENSGT00390000014635	ENSGT00940000154718	ENSGT00940000159744 #7	ENSGT00940000158247 #8	ENSGT00730000111168 #9	ENSGT00390000006284 #10	ENSGT00940000158277 #11	ENSGT00940000163344 #12	ENSGT00940000156295 #15	ENSGT00940000160324 #16	ENSGT00940000155249 #19	ENSGT00940000154953 #20	ENSGT00440000037338	ENSGT00390000002565 #21	ENSGT00950000183174.B.a #22	ENSGT00910000147956 #23	ENSGT00940000157090 #25	ENSGT00910000147140.b #28	ENSGT00390000004827 #27	ENSGT00910000146867 #29	ENSGT00940000160288 #30	ENSGT00950000183201.b.b.a #31	ENSGT00390000007888.c.b.g.b	ENSGT00390000008828 #32	ENSGT00950000182915.a.a.b #33	ENSGT00940000161998 #34	ENSGT00940000156589 #35	ENSGT00940000160382 #36	ENSGT00940000157878 #37	ENSGT00940000156171
Hominidae	ANCESTRAL SPECIES	12	ENSGT00530000063854	ENSGT00390000014635	ENSGT00940000154718	ENSGT00940000159744 #7	ENSGT00940000158247 #8	ENSGT00730000111168 #9	ENSGT00390000006284 #10	ENSGT00940000158277 #11	ENSGT00940000163344 #12	ENSGT00940000156295 #15	ENSGT00940000160324 #16	ENSGT00940000155249 #19	ENSGT00940000154953 #20	ENSGT00440000037338	ENSGT00390000002565 #21	ENSGT00950000183174.B.a #22	ENSGT00910000147956 #23	ENSGT00940000157090 #25	ENSGT00910000147140.b #28	ENSGT00390000004827 #27	ENSGT00910000146867 #29	ENSGT00940000160288 #30	ENSGT00950000183201.b.b.a #31	ENSGT00390000007888.c.b.g.b	ENSGT00390000008828 #32	ENSGT00950000182915.a.a.b #33	ENSGT00940000161998 #34	ENSGT00940000156589 #35	ENSGT00940000160382 #36	ENSGT00940000157878 #37	ENSGT00940000156171
Homo/Pan/Gorilla group	ANCESTRAL SPECIES	11	ENSGT00940000154718	ENSGT00940000159744 #7	ENSGT00940000158247 #8	ENSGT00730000111168 #9	ENSGT00390000006284 #10	ENSGT00940000158277 #11	ENSGT00940000163344 #12	ENSGT00940000155268.f.a #13	ENSGT00550000074784.a.b #14	ENSGT00940000156295 #15	ENSGT00940000160324 #16	ENSGT00940000155249 #19	ENSGT00940000154953 #20	ENSGT00440000037338	ENSGT00390000002565 #21	ENSGT00950000183174.B.a #22	ENSGT00940000157090 #25	ENSGT00910000147140.b #28	ENSGT00390000004827 #27	ENSGT00910000146867 #29	ENSGT00940000160288 #30	ENSGT00950000183201.b.b.a #31	ENSGT00390000007888.c.b.g.b	ENSGT00390000008828 #32	ENSGT00950000182915.a.a.b #33	ENSGT00940000161998 #34	ENSGT00940000156589 #35	ENSGT00940000160382 #36	ENSGT00940000157878 #37	ENSGT00940000156171	ENSGT00390000017043
Gorilla	MODERN SPECIES	17	PGRMC2 (ENSGGOG00000026492) #7	JADE1 (ENSGGOG00000002344) #8	SCLT1 (ENSGGOG00000028181) #9	C4orf33 (ENSGGOG00000009081) #10	PCDH10 (ENSGGOG00000001372) #11	PABPC4L (ENSGGOG00000024991) #12	ENSGGOG00000025252 #13	ENSGGOG00000024072 #14	PCDH18 (ENSGGOG00000014444) #15	SLC7A11 (ENSGGOG00000005762) #16	ENSGGOG00000039359 #17	ENSGGOG00000043067 #18	NOCT (ENSGGOG00000028610) #19	ELF2 (ENSGGOG00000015963) #20	NDUFC1 (ENSGGOG00000004832) #21	NAA15 (ENSGGOG00000008676) #22	ENSGGOG00000039619 #23	ENSGGOG00000039173 #24	RAB33B (ENSGGOG00000040896) #25	ENSGGOG00000036447 #26	SETD7 (ENSGGOG00000011774) #27	ENSGGOG00000044183 #28	ENSGGOG00000040366 #29	MGST2 (ENSGGOG00000004989) #30	ENSGGOG00000010453 #31	ENSGGOG00000028186 #32	CLGN (ENSGGOG00000006153) #33	MGAT4D (ENSGGOG00000027687) #34	ELMOD2 (ENSGGOG00000024299) #35	UCP1 (ENSGGOG00000023085) #36	TBC1D9 (ENSGGOG00000006878) #37
Homo/Pan group	ANCESTRAL SPECIES	10	ENSGT00530000063854	ENSGT00390000014635	ENSGT00940000154718	ENSGT00940000159744 #7	ENSGT00940000158247 #8	ENSGT00730000111168 #9	ENSGT00390000006284 #10	ENSGT00940000158277 #11	ENSGT00940000163344 #12	ENSGT00940000156295 #15	ENSGT00940000160324 #16	ENSGT00940000155249 #19	ENSGT00940000154953 #20	ENSGT00440000037338	ENSGT00390000002565 #21	ENSGT00950000183174.B.a #22	ENSGT00940000157090 #25	ENSGT00910000147140.b #28	ENSGT00390000004827 #27	ENSGT00910000146867 #29	ENSGT00940000160288 #30	ENSGT00950000183201.b.b.a #31	ENSGT00390000007888.c.b.g.b	ENSGT00390000008828 #32	ENSGT00950000182915.a.a.b #33	ENSGT00940000161998 #34	ENSGT00940000156589 #35	ENSGT00940000160382 #36	ENSGT00940000157878 #37	ENSGT00940000156171	ENSGT00390000017043
Pan	ANCESTRAL SPECIES	7	ENSGT00940000159744 #7	ENSGT00940000158247 #8	ENSGT00730000111168 #9	ENSGT00390000006284 #10	ENSGT00940000158277 #11	ENSGT00940000163344 #12	ENSGT00940000155268.f.a #13	ENSGT00550000074784.a.b #14	ENSGT00940000156295 #15	ENSGT00940000160324 #16	ENSGT00390000014100.d #17	ENSGT00940000155249 #19	ENSGT00940000154953 #20	ENSGT00440000037338	ENSGT01020000234452	ENSGT00950000183174.B.a #22	ENSGT00910000147956 #23	ENSGT00940000157090 #25	ENSGT00910000147140.b #28	ENSGT00390000004827 #27	ENSGT00910000146867 #29	ENSGT00940000160288 #30	ENSGT00950000183201.b.b.a #31	ENSGT00390000007888.c.b.g.b	ENSGT00390000008828 #32	ENSGT00950000182915.a.a.b #33	ENSGT00940000161998 #34	ENSGT00940000156589 #35	ENSGT00940000160382 #36	ENSGT00940000157878 #37	ENSGT00940000156171
Chimpanzee	MODERN SPECIES	17	SCLT1 (ENSPTRG00000016440) #9	C4H4orf33 (ENSPTRG00000016442) #10	ENSPTRG00000043884	PCDH10 (ENSPTRG00000016444) #11	PABPC4L (ENSPTRG00000045513) #12	ENSPTRG00000050900	ENSPTRG00000048018 #13	ENSPTRG00000051515 #14	PCDH18 (ENSPTRG00000024162) #15	SLC7A11 (ENSPTRG00000016446) #16	ENSPTRG00000044688 #17	NOCT (ENSPTRG00000016448) #19	ELF2 (ENSPTRG00000016449) #20	MGARP (ENSPTRG00000049739)	NDUFC1 (ENSPTRG00000046657)	NAA15 (ENSPTRG00000016453) #22	ENSPTRG00000051600 #23	ENSPTRG00000050062 #26	RAB33B (ENSPTRG00000016455) #25	SETD7 (ENSPTRG00000039601) #27	ENSPTRG00000043112 #28	ENSPTRG00000051753 #29	MGST2 (ENSPTRG00000016457) #30	MAML3 (ENSPTRG00000016459) #31	SCOC (ENSPTRG00000016460) #32	ENSPTRG00000045152	CLGN (ENSPTRG00000049174) #33	MGAT4D (ENSPTRG00000031089) #34	ELMOD2 (ENSPTRG00000016462) #35	UCP1 (ENSPTRG00000016463) #36	TBC1D9 (ENSPTRG00000016464) #37
Bonobo	MODERN SPECIES	17	C4orf33 (ENSPPAG00000036110) #10	PCDH10 (ENSPPAG00000035058) #11	PABPC4L (ENSPPAG00000043745) #12	ENSPPAG00000042996	ENSPPAG00000036402 #13	ENSPPAG00000032483 #14	PCDH18 (ENSPPAG00000003442) #15	SLC7A11 (ENSPPAG00000039405) #16	ENSPPAG00000027209 #17	ENSPPAG00000003317 ##18	NOCT (ENSPPAG00000042856) #19	ELF2 (ENSPPAG00000016962) #20	ENSPPAG00000037896	MGARP (ENSPPAG00000040248)	ENSPPAG00000037033	NAA15 (ENSPPAG00000034447) #22	ENSPPAG00000042826 #23	ENSPPAG00000043084 #26	RAB33B (ENSPPAG00000043376) #25	SETD7 (ENSPPAG00000027000) #27	ENSPPAG00000040472 #28	ENSPPAG00000013101 #29	MGST2 (ENSPPAG00000034504) #30	MAML3 (ENSPPAG00000002376) #31	ENSPPAG00000042997 #32	ENSPPAG00000033463	CLGN (ENSPPAG00000040396) #33	MGAT4D (ENSPPAG00000036062) #34	ELMOD2 (ENSPPAG00000042771) #35	UCP1 (ENSPPAG00000027664) #36	TBC1D9 (ENSPPAG00000029993) #37
Human	MODERN SPECIES	16	MFSD8 (ENSG00000164073)	ABHD18 (ENSG00000164074)	LARP1B (ENSG00000138709)	PGRMC2 (ENSG00000164040) #7	JADE1 (ENSG00000077684) #8	SCLT1 (ENSG00000151466) #9	C4orf33 (ENSG00000151470) #10	PCDH10 (ENSG00000138650) #11	PABPC4L (ENSG00000254535) #12	PCDH18 (ENSG00000189184) #15	SLC7A11 (ENSG00000151012) #16	NOCT (ENSG00000151014) #19	ELF2 (ENSG00000109381) #20	MGARP (ENSG00000137463)	NDUFC1 (ENSG00000109390) #21	NAA15 (ENSG00000164134) #22	RAB33B (ENSG00000172007) #25	SETD7 (ENSG00000145391) #27	MGST2 (ENSG00000085871) #30	MAML3 (ENSG00000196782) #31	SCOC (ENSG00000153130) #32	CLGN (ENSG00000153132) #33	MGAT4D (ENSG00000205301) #34	ELMOD2 (ENSG00000179387) #35	UCP1 (ENSG00000109424) #36	TBC1D9 (ENSG00000109436) #37	RNF150 (ENSG00000170153)	ZNF330 (ENSG00000109445)	IL15 (ENSG00000164136)	INPP4B (ENSG00000109452)	USP38 (ENSG00000170185)
Orangutan	MODERN SPECIES	17	PGRMC2 (ENSPPYG00000015060) #7	JADE1 (ENSPPYG00000015061) #8	SCLT1 (ENSPPYG00000015062) #9	C4orf33 (ENSPPYG00000015063) #10	ENSPPYG00000019040	PCDH10 (ENSPPYG00000015064) #11	PABPC4L (ENSPPYG00000034327) #12	ENSPPYG00000033312 #13	PCDH18 (ENSPPYG00000015065) #15	SLC7A11 (ENSPPYG00000015066) #16	ENSPPYG00000041202	NOCT (ENSPPYG00000033593) #19	ELF2 (ENSPPYG00000015068) #20	MGARP (ENSPPYG00000015069)	NDUFC1 (ENSPPYG00000015070) #21	NAA15 (ENSPPYG00000015071) #22	ENSPPYG00000035439 #23	RAB33B (ENSPPYG00000015072) #25	SETD7 (ENSPPYG00000015073) #27	ENSPPYG00000038857 #29	MGST2 (ENSPPYG00000015074) #30	MAML3 (ENSPPYG00000015075) #31	ENSPPYG00000033334 #32	CLGN (ENSPPYG00000015078) #33	MGAT4D (ENSPPYG00000015079) #34	ELMOD2 (ENSPPYG00000015080) #35	UCP1 (ENSPPYG00000015081) #36	TBC1D9 (ENSPPYG00000015082) #37	RNF150 (ENSPPYG00000015083)	ZNF330 (ENSPPYG00000015084)	IL15 (ENSPPYG00000015085)
Gibbon	MODERN SPECIES	22	C4orf33 (ENSNLEG00000031979) #10	ENSNLEG00000028478	ENSNLEG00000029937	ENSNLEG00000029766	PCDH10 (ENSNLEG00000013967) #11	PABPC4L (ENSNLEG00000019300) #12	ENSNLEG00000027749 ##13	ENSNLEG00000035962	ENSNLEG00000029177 #14	PCDH18 (ENSNLEG00000013976) #15	SLC7A11 (ENSNLEG00000013991) #16	NOCT (ENSNLEG00000014018) #19	ELF2 (ENSNLEG00000014022) #20	MGARP (ENSNLEG00000033771)	NDUFC1 (ENSNLEG00000034036) #21	NAA15 (ENSNLEG00000014091) #22	SLC5A4 (ENSNLEG00000014174)	ENSNLEG00000032908	ENSNLEG00000014190	ENSNLEG00000033813	HMGXB4 (ENSNLEG00000014194)	TOM1 (ENSNLEG00000014220)	HMOX1 (ENSNLEG00000033127)	ENSNLEG00000035950	MCM5 (ENSNLEG00000014356)	ENSNLEG00000027344	RASD2 (ENSNLEG00000014374)	MB (ENSNLEG00000014375)	ENSNLEG00000030094	APOL5 (ENSNLEG00000014384)	ENSNLEG00000028137
Cercopithecidae	ANCESTRAL SPECIES	10	ENSGT00530000063854	ENSGT00390000014635	ENSGT00940000154718	ENSGT00940000159744 #7	ENSGT00940000158247 #8	ENSGT00730000111168 #9	ENSGT00390000006284 #10	ENSGT00940000158277 #11	ENSGT00940000156295 #15	ENSGT00940000160324 #16	ENSGT00940000165807	ENSGT00940000155249.a #19	ENSGT00940000154953 #20	ENSGT00440000037338	ENSGT00390000002565 #21	ENSGT00950000183174.B.a #22	ENSGT00940000157090 #25	ENSGT00910000147140 #28	ENSGT00390000004827 #27	ENSGT00910000146867 #29	ENSGT00940000160288 #30	ENSGT00950000183201.b.b.a #31	ENSGT00390000007888.c.b.g.b	ENSGT00390000008828 #32	ENSGT00950000182915.a.a.b #33	ENSGT00940000161998 #34	ENSGT00940000156589 #35	ENSGT00940000160382 #36	ENSGT00910000148499	ENSGT00940000157878 #37	ENSGT00940000156171
Cercopithecinae	ANCESTRAL SPECIES	14	ENSGT00530000063854	ENSGT00390000014635	ENSGT00940000154718	ENSGT00940000159744 #7	ENSGT00940000158247 #8	ENSGT00730000111168 #9	ENSGT00390000006284 #10	ENSGT00940000158277 #11	ENSGT00940000156295 #15	ENSGT00940000160324 #16	ENSGT00940000165807	ENSGT00940000155249.a #19	ENSGT00940000154953 #20	ENSGT00440000037338	ENSGT00390000002565 #21	ENSGT00950000183174.B.a #22	ENSGT00940000157090 #25	ENSGT00910000147140 #28	ENSGT00390000004827 #27	ENSGT00910000146867 #29	ENSGT00940000160288 #30	ENSGT00950000183201.b.b.a #31	ENSGT00390000007888.c.b.g.b	ENSGT00390000008828 #32	ENSGT00950000182915.a.a.b #33	ENSGT00940000161998 #34	ENSGT00940000156589 #35	ENSGT00940000160382 #36	ENSGT00910000148499	ENSGT00940000157878 #37	ENSGT00940000156171
Cercopithecinae_a	ANCESTRAL SPECIES	13	ENSGT00530000063854	ENSGT00390000014635	ENSGT00940000154718	ENSGT00940000159744 #7	ENSGT00940000158247 #8	ENSGT00730000111168 #9	ENSGT00390000006284 #10	ENSGT00940000158277 #11	ENSGT00940000156295 #15	ENSGT00940000160324 #16	ENSGT00940000165807	ENSGT00940000155249.a #19	ENSGT00940000154953 #20	ENSGT00440000037338	ENSGT00390000002565 #21	ENSGT00950000183174.B.a #22	ENSGT00960000187632.b.b	ENSGT00940000157090 #25	ENSGT00910000147140 #28	ENSGT00390000004827 #27	ENSGT00910000146867 #29	ENSGT00940000160288 #30	ENSGT00950000183201.b.b.a #31	ENSGT00390000007888.c.b.g.b	ENSGT00390000008828 #32	ENSGT00950000182915.a.a.b #33	ENSGT00940000161998 #34	ENSGT00940000156589 #35	ENSGT00940000160382 #36	ENSGT00910000148499	ENSGT00940000157878 #37
Macaca	ANCESTRAL SPECIES	18	ENSGT00530000063854	ENSGT00390000014635	ENSGT00940000154718	ENSGT00940000159744 #7	ENSGT00940000158247 #8	ENSGT00730000111168 #9	ENSGT00390000006284 #10	ENSGT00940000158277 #11	ENSGT00940000156295 #15	ENSGT00940000160324 #16	ENSGT00940000165807	ENSGT00940000155249.a #19	ENSGT00940000154953 #20	ENSGT00440000037338	ENSGT00390000002565 #21	ENSGT00950000183174.B.a #22	ENSGT00960000187632.b.b	ENSGT00940000157090 #25	ENSGT00910000147140 #28	ENSGT00390000004827 #27	ENSGT00910000146867 #29	ENSGT00940000160288 #30	ENSGT00950000183201.b.b.a #31	ENSGT00390000008828 #32	ENSGT00950000182915.a.a.b #33	ENSGT00940000161998 #34	ENSGT00940000156589 #35	ENSGT00940000160382 #36	ENSGT00910000148499	ENSGT00940000157878 #37	ENSGT00390000003582.f.c
Macaca_a	ANCESTRAL SPECIES	12	ENSGT00940000154718	ENSGT00940000159744 #7	ENSGT00940000158247 #8	ENSGT00730000111168 #9	ENSGT00390000006284 #10	ENSGT00940000158277 #11	ENSGT00940000163344 #12	ENSGT01100000263543.a.g.b.b.b.a.b.a.a.b.b.b.b	ENSGT00940000156295 #15	ENSGT00940000160324 #16	ENSGT00940000155249.a #19	ENSGT00940000154953 #20	ENSGT01100000263493.b.a.a.a.b.a.a	ENSGT00440000037338	ENSGT00940000163505.a.a.a.b.a.b.b.a.a.b.b.a.b.a.b.a.a	ENSGT00950000183174.B.a #22	ENSGT00960000187632.b.b.a	ENSGT00940000157090 #25	ENSGT00910000147140 #28	ENSGT00390000004827 #27	ENSGT00910000146867 #29	ENSGT00940000160288 #30	ENSGT00950000183201.b.b.a #31	ENSGT00390000008828 #32	ENSGT00950000182915.a.a.b #33	ENSGT00940000161998 #34	ENSGT00940000156589 #35	ENSGT00940000160382 #36	ENSGT00940000157878 #37	ENSGT00390000003582.e.c.c.b	ENSGT00940000156171
Rhesus	MODERN SPECIES	15	PCDH10 (ENSMMUG00000023149) #11	ENSMMUG00000030153	ENSMMUG00000056568	PABPC4L (ENSMMUG00000007193) #12	ENSMMUG00000065314	PCDH18 (ENSMMUG00000008362) #15	SLC7A11 (ENSMMUG00000020317) #16	ENSMMUG00000058171	ENSMMUG00000051665	ENSMMUG00000051502	NOCT (ENSMMUG00000004983) #19	ELF2 (ENSMMUG00000004984) #20	ENSMMUG00000051902	MGARP (ENSMMUG00000004196)	ENSMMUG00000053146	NAA15 (ENSMMUG00000018184) #22	ENSMMUG00000062408	ENSMMUG00000057349	ENSMMUG00000056921	RAB33B (ENSMMUG00000020692) #25	SETD7 (ENSMMUG00000001841) #27	MGST2 (ENSMMUG00000021999) #30	MAML3 (ENSMMUG00000021998) #31	ENSMMUG00000063075	ENSMMUG00000053045 #32	CLGN (ENSMMUG00000022355) #33	MGAT4D (ENSMMUG00000030139) #34	ELMOD2 (ENSMMUG00000015242) #35	UCP1 (ENSMMUG00000015244) #36	TBC1D9 (ENSMMUG00000015246) #37	ENSMMUG00000054844
Crab-eating macaque	MODERN SPECIES	15	ENSMFAG00000053329	ENSMFAG00000056803	PCDH10 (ENSMFAG00000046322) #11	ENSMFAG00000041255	PABPC4L (ENSMFAG00000047191) #12	ENSMFAG00000050653	ENSMFAG00000018632	PCDH18 (ENSMFAG00000042004) #15	SLC7A11 (ENSMFAG00000037696) #16	ENSMFAG00000049791	NOCT (ENSMFAG00000002713) #19	ELF2 (ENSMFAG00000042627) #20	ENSMFAG00000065417	MGARP (ENSMFAG00000044238)	ENSMFAG00000053715	NAA15 (ENSMFAG00000041929) #22	ENSMFAG00000052710	RAB33B (ENSMFAG00000003290) #25	ENSMFAG00000057880	ENSMFAG00000061141 #28	SETD7 (ENSMFAG00000002176) #27	ENSMFAG00000045326 #29	MGST2 (ENSMFAG00000046340) #30	MAML3 (ENSMFAG00000044421) #31	ENSMFAG00000058013	ENSMFAG00000001579 #32	CLGN (ENSMFAG00000044499) #33	MGAT4D (ENSMFAG00000036899) #34	ENSMFAG00000052917 #35	ELMOD2 (ENSMFAG00000046408) #35	UCP1 (ENSMFAG00000043786) #36
Pig-tailed macaque	MODERN SPECIES	201									PCDH18 (ENSMNEG00000044945) #15	SLC7A11 (ENSMNEG00000033891) #16	ENSMNEG00000039485	ENSMNEG00000042407 #19	ELF2 (ENSMNEG00000040596) #20	MGARP (ENSMNEG00000033215)	NDUFC1 (ENSMNEG00000041905) #21	NAA15 (ENSMNEG00000040674) #22	ENSMNEG00000017460	RAB33B (ENSMNEG00000024756) #25	SETD7 (ENSMNEG00000043802) #27	ENSMNEG00000040819 #29	MGST2 (ENSMNEG00000035368) #30	MAML3 (ENSMNEG00000040179) #31	SCOC (ENSMNEG00000045271) #32	CLGN (ENSMNEG00000026848) #33	MGAT4D (ENSMNEG00000031956) #34	ELMOD2 (ENSMNEG00000000643) #35	UCP1 (ENSMNEG00000034442) #36	ENSMNEG00000037749	TBC1D9 (ENSMNEG00000041392) #37	ENSMNEG00000036378	RNF150 (ENSMNEG00000042816)
Cercopithecinae_b	ANCESTRAL SPECIES	6	ENSGT00940000156316	ENSGT00530000063854	ENSGT00390000014635	ENSGT00940000154718	ENSGT00940000159744 #7	ENSGT00940000158247 #8	ENSGT00730000111168 #9	ENSGT00390000006284 #10	ENSGT00940000158277 #11	ENSGT00940000156295 #15	ENSGT00940000160324 #16	ENSGT00940000155249.a #19	ENSGT00940000154953 #20	ENSGT00440000037338	ENSGT00390000002565 #21	ENSGT00950000183174.B.a #22	ENSGT00960000187632.b.b	ENSGT00940000157090 #25	ENSGT00390000004827 #27	ENSGT00910000146867 #29	ENSGT00940000160288 #30	ENSGT00950000183201.b.b.a #31	ENSGT00390000007888.c.b.g.b	ENSGT00390000008828 #32	ENSGT00950000182915.a.a.b #33	ENSGT00940000161998 #34	ENSGT00940000156589 #35	ENSGT00940000160382 #36	ENSGT00940000157878 #37	ENSGT00390000003582.f.c	ENSGT00940000156171
Olive baboon	MODERN SPECIES	13	ENSPANG00000044261	ENSPANG00000038219	PABPC4L (ENSPANG00000050834) #12	ENSPANG00000048641	PCDH18 (ENSPANG00000001381) #15	SLC7A11 (ENSPANG00000004190) #16	ENSPANG00000042292	ENSPANG00000038957	ENSPANG00000043069	ENSPANG00000045459	NOCT (ENSPANG00000038607) #19	ELF2 (ENSPANG00000006144) #20	ENSPANG00000043163	MGARP (ENSPANG00000006628)	NDUFC1 (ENSPANG00000017811) #21	NAA15 (ENSPANG00000020525) #22	ENSPANG00000043263	RAB33B (ENSPANG00000014740) #25	SETD7 (ENSPANG00000012876) #27	ENSPANG00000032140 #29	MGST2 (ENSPANG00000012875) #30	MAML3 (ENSPANG00000023379) #31	ENSPANG00000047009	SCOC (ENSPANG00000033516) #32	CLGN (ENSPANG00000012438) #33	MGAT4D (ENSPANG00000021633) #34	ELMOD2 (ENSPANG00000022482) #35	UCP1 (ENSPANG00000019036) #36	TBC1D9 (ENSPANG00000016781) #37	ENSPANG00000030921	RNF150 (ENSPANG00000009678)
Cercopithecinae_d	ANCESTRAL SPECIES	21									ENSGT00940000156295 #15	ENSGT00940000160324 #16	ENSGT00940000155249.a #19	ENSGT00940000154953 #20	ENSGT00440000037338	ENSGT00390000002565 #21	ENSGT00910000148819	ENSGT00950000183174.B.a #22	ENSGT00940000157090 #25	ENSGT00390000004827 #27	ENSGT00910000146867 #29	ENSGT00940000160288 #30	ENSGT00950000183201.b.b.a #31	ENSGT00390000007888.c.b.g.b	ENSGT00390000008828 #32	ENSGT00950000182915.a.a.b #33	ENSGT00940000161998 #34	ENSGT00940000156589 #35	ENSGT00940000160382 #36	ENSGT00940000157878 #37	ENSGT00390000003582.f.c	ENSGT00940000156171	ENSGT00390000017043
Drill	MODERN SPECIES	928									PCDH18 (ENSMLEG00000020718) #15	SLC7A11 (ENSMLEG00000041464) #16	ENSMLEG00000040699 #19	ELF2 (ENSMLEG00000030858) #20	MGARP (ENSMLEG00000015920)	NDUFC1 (ENSMLEG00000041831) #21	ENSMLEG00000006279	NAA15 (ENSMLEG00000027970) #22	RAB33B (ENSMLEG00000033393) #25	SETD7 (ENSMLEG00000032636) #27	ENSMLEG00000039825 #29	MGST2 (ENSMLEG00000039730) #30	MAML3 (ENSMLEG00000043712) #31	ENSMLEG00000041147	SCOC (ENSMLEG00000036415) #32	CLGN (ENSMLEG00000017930) #33	MGAT4D (ENSMLEG00000032769) #34	ELMOD2 (ENSMLEG00000041855) #35	UCP1 (ENSMLEG00000030341) #36
Sooty mangabey	MODERN SPECIES	575								ENSCATG00000041744 ##14	PCDH18 (ENSCATG00000038954) #15	SLC7A11 (ENSCATG00000029245) #16	ENSCATG00000041737 #19	ELF2 (ENSCATG00000032126) #20	MGARP (ENSCATG00000038439)	NDUFC1 (ENSCATG00000042092) #21	ENSCATG00000016532	NAA15 (ENSCATG00000005537) #22	RAB33B (ENSCATG00000007092) #25	SETD7 (ENSCATG00000030383) #27	ENSCATG00000014453 #29	MGST2 (ENSCATG00000044814) #30	MAML3 (ENSCATG00000029477) #31	ENSCATG00000035949	SCOC (ENSCATG00000045036) #32	CLGN (ENSCATG00000034016) #33	MGAT4D (ENSCATG00000030864) #34	ELMOD2 (ENSCATG00000028878) #35	UCP1 (ENSCATG00000039147) #36	TBC1D9 (ENSCATG00000027992) #37	ENSCATG00000033922	RNF150 (ENSCATG00000036670)	ZNF330 (ENSCATG00000035879)
Vervet Monkey	MODERN SPECIES	26	ENSCSAG00000003594	ENSCSAG00000003591	LARP1B (ENSCSAG00000003582)	PGRMC2 (ENSCSAG00000003565) #7	JADE1 (ENSCSAG00000003562) #8	SCLT1 (ENSCSAG00000003559) #9	C4orf33 (ENSCSAG00000003555) #10	ENSCSAG00000000391	PCDH10 (ENSCSAG00000003553) #11	PCDH18 (ENSCSAG00000003551) #15	SLC7A11 (ENSCSAG00000003547) #16	NOCT (ENSCSAG00000003545) #19	ELF2 (ENSCSAG00000003542) #20	MGARP (ENSCSAG00000003540)	NDUFC1 (ENSCSAG00000003539) #21	NAA15 (ENSCSAG00000003534) #22	RAB33B (ENSCSAG00000003531) #25	SETD7 (ENSCSAG00000003529) #27	MGST2 (ENSCSAG00000003527) #30	MAML3 (ENSCSAG00000003524) #31	CLGN (ENSCSAG00000003520) #33	MGAT4D (ENSCSAG00000003516) #34	ELMOD2 (ENSCSAG00000003509) #35	UCP1 (ENSCSAG00000003508) #36	TBC1D9 (ENSCSAG00000003505) #37	ENSCSAG00000000390	ZNF330 (ENSCSAG00000003500)	IL15 (ENSCSAG00000003496)	INPP4B (ENSCSAG00000003489)	USP38 (ENSCSAG00000003455)	GAB1 (ENSCSAG00000003452)
Rhinopithecus	ANCESTRAL SPECIES	223								ENSGT00940000156295 #15	ENSGT00940000160324 #16	ENSGT00940000165807	ENSGT00940000162527	ENSGT00940000155249.a #19	ENSGT00940000154953 #20	ENSGT00440000037338	ENSGT00390000002565 #21	ENSGT00950000183174.B.a #22	ENSGT00940000157090 #25	ENSGT00390000004827 #27	ENSGT00910000146867 #29	ENSGT00940000160288 #30	ENSGT00950000183201.b.b.a #31	ENSGT00390000007888.c.b.g.b	ENSGT00390000008828 #32	ENSGT00950000182915.a.a.b #33	ENSGT00940000161998 #34	ENSGT00940000156589 #35	ENSGT00940000160382 #36	ENSGT00940000157878 #37	ENSGT00390000002615.p	ENSGT00940000156171	ENSGT00390000017043
Golden snub-nosed monkey	MODERN SPECIES	2857												ENSRROG00000032107 #19	ELF2 (ENSRROG00000031259) #20	MGARP (ENSRROG00000021795)	NDUFC1 (ENSRROG00000024598) #21	NAA15 (ENSRROG00000000220) #22	RAB33B (ENSRROG00000033951) #25	SETD7 (ENSRROG00000042746) #27	ENSRROG00000023844 #29	MGST2 (ENSRROG00000028330) #30	MAML3 (ENSRROG00000039542) #31	ENSRROG00000043258	SCOC (ENSRROG00000038575) #32	CLGN (ENSRROG00000027041) #33	MGAT4D (ENSRROG00000042389) #34
Black snub-nosed monkey	MODERN SPECIES	2400													SLFN5 (ENSRBIG00000035315)	MGARP (ENSRBIG00000041641)	NDUFC1 (ENSRBIG00000029941) #21	NAA15 (ENSRBIG00000040132) #22	RAB33B (ENSRBIG00000008435) #25	SETD7 (ENSRBIG00000033989) #27
Platyrrhini	ANCESTRAL SPECIES	5	ENSGT00530000063854	ENSGT00390000014635	ENSGT00940000154718	ENSGT00940000159744 #7	ENSGT00940000158247 #8	ENSGT00730000111168 #9	ENSGT00390000006284 #10	ENSGT00940000158277 #11	ENSGT00940000163344 #12	ENSGT00940000156295 #15	ENSGT00940000160324 #16	ENSGT00940000155249 #19	ENSGT00940000154953 #20	ENSGT00440000037338	ENSGT00390000002565 #21	ENSGT00950000183174.B.a #22	ENSGT00910000147956 #23	ENSGT00940000157090 #25	ENSGT00390000004827 #27	ENSGT00910000146867 #29	ENSGT00940000160288 #30	ENSGT00950000183201.b.b.a #31	ENSGT00390000008828 #32	ENSGT00950000182915.a.a.b #33	ENSGT00940000161998 #34	ENSGT00940000156589 #35	ENSGT00940000160382 #36	ENSGT00940000157878 #37	ENSGT00940000156171	ENSGT00390000017043	ENSGT00390000016264
Cebidae	ANCESTRAL SPECIES	4	ENSGT00940000156316	ENSGT00530000063854	ENSGT00390000014635	ENSGT00940000154718	ENSGT00940000159744 #7	ENSGT00940000158247 #8	ENSGT00730000111168 #9	ENSGT00390000006284 #10	ENSGT00940000158277 #11	ENSGT00940000163344 #12	ENSGT00940000156295 #15	ENSGT00940000160324 #16	ENSGT00940000155249 #19	ENSGT00440000037338	ENSGT00390000002565 #21	ENSGT00950000183174.B.a #22	ENSGT00940000157090 #25	ENSGT00390000004827 #27	ENSGT00910000146867 #29	ENSGT00940000160288 #30	ENSGT00950000183201.b.b.a #31	ENSGT00390000008828 #32	ENSGT00950000182915.a.a.b #33	ENSGT00940000161998 #34	ENSGT00940000156589 #35	ENSGT00940000160382 #36	ENSGT00940000157878 #37	ENSGT00940000156171	ENSGT00390000017043	ENSGT00390000016264	ENSGT00940000157587
Cebidae_a	ANCESTRAL SPECIES	49											ENSGT00940000156295 #15	ENSGT00940000160324 #16	ENSGT00940000155249 #19	ENSGT00440000037338	ENSGT00390000002565 #21	ENSGT00950000183174.B.a #22	ENSGT00940000157090 #25	ENSGT00390000004827 #27	ENSGT00910000146867 #29	ENSGT00940000160288 #30	ENSGT00950000183201.b.b.a #31	ENSGT00390000008828 #32	ENSGT00950000182915.a.a.b #33	ENSGT00940000161998 #34	ENSGT00940000156589 #35	ENSGT00940000160382 #36	ENSGT00940000157878 #37	ENSGT00940000156171	ENSGT00390000017043	ENSGT00390000016264	ENSGT00940000157587
Capuchin	MODERN SPECIES	303				ENSCCAG00000034683	PCDH18 (ENSCCAG00000023413) #15	SLC7A11 (ENSCCAG00000033426) #16	ENSCCAG00000032478	ENSCCAG00000036211	NOCT (ENSCCAG00000022628) #19	ELF2 (ENSCCAG00000025670) #20	ENSCCAG00000028381	ENSCCAG00000037489	MGARP (ENSCCAG00000032552)	ENSCCAG00000035857	NDUFC1 (ENSCCAG00000020974) #21	NAA15 (ENSCCAG00000021709) #22	RAB33B (ENSCCAG00000019859) #25	SETD7 (ENSCCAG00000030675) #27	ENSCCAG00000020807 #29	MGST2 (ENSCCAG00000020498) #30	ENSCCAG00000025062
Bolivian squirrel monkey	MODERN SPECIES	68														MGARP (ENSSBOG00000032681)	NDUFC1 (ENSSBOG00000020283) #21	NAA15 (ENSSBOG00000028600) #22	RAB33B (ENSSBOG00000028836) #25	SETD7 (ENSSBOG00000001707) #27	ENSSBOG00000028958 #29	MGST2 (ENSSBOG00000022825) #30	MAML3 (ENSSBOG00000035958) #31	SCOC (ENSSBOG00000029458) #32	CLGN (ENSSBOG00000030802) #33	MGAT4D (ENSSBOG00000028510) #34	ELMOD2 (ENSSBOG00000021628) #35	UCP1 (ENSSBOG00000026412) #36	TBC1D9 (ENSSBOG00000033747) #37	RNF150 (ENSSBOG00000021561)	ZNF330 (ENSSBOG00000033260)	IL15 (ENSSBOG00000023289)	INPP4B (ENSSBOG00000026274)
Marmoset	MODERN SPECIES	15	ENSCJAG00000069399	PCDH10 (ENSCJAG00000003244) #11	ENSCJAG00000003236	ENSCJAG00000083366	PCDH18 (ENSCJAG00000003221) #15	SLC7A11 (ENSCJAG00000003185) #16	ENSCJAG00000081026	ENSCJAG00000075373	ENSCJAG00000067530	NOCT (ENSCJAG00000003158) #19	ENSCJAG00000074176	ENSCJAG00000077628	ELF2 (ENSCJAG00000003174) #20	MGARP (ENSCJAG00000079335)	NDUFC1 (ENSCJAG00000041850) #21	NAA15 (ENSCJAG00000003095) #22	ENSCJAG00000070849	ENSCJAG00000044687 #23	ENSCJAG00000085317	RAB33B (ENSCJAG00000067266) #25	SETD7 (ENSCJAG00000003081) #27	ENSCJAG00000075463	ENSCJAG00000040564 #29	MGST2 (ENSCJAG00000003073) #30	MAML3 (ENSCJAG00000003065) #31	ENSCJAG00000039536 #32	CLGN (ENSCJAG00000003045) #33	ENSCJAG00000039765 #34	ELMOD2 (ENSCJAG00000003032) #35	UCP1 (ENSCJAG00000003017) #36	TBC1D9 (ENSCJAG00000002968) #37
Mas night monkey	MODERN SPECIES	467		PCDH10 (ENSANAG00000024645) #11	PABPC4L (ENSANAG00000017199) #12	ENSANAG00000011108	ENSANAG00000023736	ENSANAG00000024660	PCDH18 (ENSANAG00000032148) #15	ENSANAG00000022395	SLC7A11 (ENSANAG00000034963) #16	NOCT (ENSANAG00000009701) #19	ELF2 (ENSANAG00000028170) #20	MGARP (ENSANAG00000027485)	ENSANAG00000024745	NDUFC1 (ENSANAG00000026650) #21	ENSANAG00000002172	NAA15 (ENSANAG00000035444) #22	ENSANAG00000027372 #23	RAB33B (ENSANAG00000027700) #25	SETD7 (ENSANAG00000025192) #27	ENSANAG00000024657 #29	MGST2 (ENSANAG00000030191) #30	MAML3 (ENSANAG00000036227) #31	SCOC (ENSANAG00000032422) #32	CLGN (ENSANAG00000032298) #33	ENSANAG00000037293 #34	ELMOD2 (ENSANAG00000022200) #35	UCP1 (ENSANAG00000029189) #36	TBC1D9 (ENSANAG00000024972) #37	RNF150 (ENSANAG00000028559)	ZNF330 (ENSANAG00000033634)
Tarsier	MODERN SPECIES	5899																NAA15 (ENSTSYG00000003462) #22	RAB33B (ENSTSYG00000033032) #25	SETD7 (ENSTSYG00000035324) #27
Strepsirrhini	ANCESTRAL SPECIES	32	ENSGT00530000063854	ENSGT00390000014635	ENSGT00940000154718	ENSGT00940000159744 #7	ENSGT00940000158247 #8	ENSGT00730000111168 #9	ENSGT00390000006284 #10	ENSGT00940000158277 #11	ENSGT00940000163344 #12	ENSGT00940000156295 #15	ENSGT00940000160324 #16	ENSGT00940000155249 #19	ENSGT00940000154953 #20	ENSGT00440000037338	ENSGT00390000002565 #21	ENSGT00950000183174.B.a #22	ENSGT00940000157090 #25	ENSGT00390000004827 #27	ENSGT00940000160288 #30	ENSGT00950000183201.b.b.a #31	ENSGT00390000008828 #32	ENSGT00950000182915.a.a.b #33	ENSGT00940000161998 #34	ENSGT00940000156589 #35	ENSGT00940000160382 #36	ENSGT00910000148499	ENSGT00940000157878 #37	ENSGT00940000156171	ENSGT00390000017043	ENSGT00390000016264	ENSGT00940000157587
Lemuriformes	ANCESTRAL SPECIES	38	ENSGT00530000063854	ENSGT00390000014635	ENSGT00940000154718	ENSGT00940000159744 #7	ENSGT00940000158247 #8	ENSGT00730000111168 #9	ENSGT00390000006284 #10	ENSGT00940000158277 #11	ENSGT00940000163344 #12	ENSGT00940000156295 #15	ENSGT00940000160324 #16	ENSGT00940000155249 #19	ENSGT00940000154953 #20	ENSGT00440000037338	ENSGT00390000002565 #21	ENSGT00950000183174.B.a #22	ENSGT00940000157090 #25	ENSGT00390000004827 #27	ENSGT00940000160288 #30	ENSGT00950000183201.b.b.a #31	ENSGT00390000008828 #32	ENSGT00950000182915.a.a.b #33	ENSGT00940000161998 #34	ENSGT00940000156589 #35	ENSGT00940000160382 #36	ENSGT00910000148499	ENSGT00940000157878 #37	ENSGT00940000156171	ENSGT00390000017043	ENSGT00390000016264	ENSGT00940000157587
Lemuriformes_a	ANCESTRAL SPECIES	61									ENSGT00940000156295 #15	ENSGT00940000160324 #16	ENSGT00940000155249 #19	ENSGT00940000154953 #20	ENSGT00390000017890.fb.b	ENSGT00440000037338	ENSGT00390000002565 #21	ENSGT00950000183174.B.a #22	ENSGT00940000157090 #25	ENSGT00390000004827 #27	ENSGT00940000160288 #30	ENSGT00950000183201.b.b.a #31	ENSGT00390000008828 #32	ENSGT00950000182915.a.a.b #33	ENSGT00940000161998 #34	ENSGT00940000156589 #35	ENSGT00940000160382 #36	ENSGT00910000148499	ENSGT00940000157878 #37	ENSGT00940000156171	ENSGT00390000017043	ENSGT00390000016264	ENSGT00940000157587
Greater bamboo lemur	MODERN SPECIES	1295								PCDH18 (ENSPSMG00000001093) #15	SLC7A11 (ENSPSMG00000001000) #16	ENSPSMG00000000927	NOCT (ENSPSMG00000000919) #19	ENSPSMG00000000915	ELF2 (ENSPSMG00000000797) #20	MGARP (ENSPSMG00000000683)	NDUFC1 (ENSPSMG00000023905) #21	NAA15 (ENSPSMG00000023890) #22	RAB33B (ENSPSMG00000023852) #25	SETD7 (ENSPSMG00000023843) #27	MGST2 (ENSPSMG00000023823) #30	ENSPSMG00000023818 #31	ENSPSMG00000023815 #31
Coquerels sifaka	MODERN SPECIES	92									PCDH18 (ENSPCOG00000027193) #15	SLC7A11 (ENSPCOG00000026918) #16	NOCT (ENSPCOG00000013805) #19	ELF2 (ENSPCOG00000016141) #20	ENSPCOG00000017597	MGARP (ENSPCOG00000020598)	NDUFC1 (ENSPCOG00000002891) #21	NAA15 (ENSPCOG00000026962) #22	RAB33B (ENSPCOG00000014314) #25	SETD7 (ENSPCOG00000018357) #27	MGST2 (ENSPCOG00000026886) #30	MAML3 (ENSPCOG00000020317) #31	ENSPCOG00000009673 #32	CLGN (ENSPCOG00000013430) #33	MGAT4D (ENSPCOG00000017123) #34	ELMOD2 (ENSPCOG00000019207) #35	UCP1 (ENSPCOG00000020219) #36	TBC1D9 (ENSPCOG00000022369) #37	ENSPCOG00000018162	ENSPCOG00000024152
Mouse lemur	MODERN SPECIES	5	ABHD18 (ENSMICG00000011534)	ENSMICG00000036111	PGRMC2 (ENSMICG00000011485) #7	JADE1 (ENSMICG00000044275) #8	SCLT1 (ENSMICG00000017457) #9	C4orf33 (ENSMICG00000042663) #10	ENSMICG00000047477	PCDH10 (ENSMICG00000008070) #11	PABPC4L (ENSMICG00000029683) #12	PCDH18 (ENSMICG00000027527) #15	SLC7A11 (ENSMICG00000005805) #16	NOCT (ENSMICG00000046478) #19	ELF2 (ENSMICG00000005810) #20	MGARP (ENSMICG00000030509)	NDUFC1 (ENSMICG00000043951) #21	NAA15 (ENSMICG00000014119) #22	RAB33B (ENSMICG00000034809) #25	SETD7 (ENSMICG00000007056) #27	MGST2 (ENSMICG00000007060) #30	MAML3 (ENSMICG00000033333) #31	SCOC (ENSMICG00000007077) #32	CLGN (ENSMICG00000007083) #33	MGAT4D (ENSMICG00000003973) #34	ELMOD2 (ENSMICG00000030808) #35	UCP1 (ENSMICG00000008999) #36	ENSMICG00000034102	TBC1D9 (ENSMICG00000009012) #37	RNF150 (ENSMICG00000009057)	ENSMICG00000044516	ZNF330 (ENSMICG00000027897)	IL15 (ENSMICG00000003154)
Bushbaby	MODERN SPECIES	156														MGARP (ENSOGAG00000002013)	NDUFC1 (ENSOGAG00000008402) #21	NAA15 (ENSOGAG00000010139) #22	RAB33B (ENSOGAG00000006778) #25	SETD7 (ENSOGAG00000012216) #27	MGST2 (ENSOGAG00000006051) #30	MAML3 (ENSOGAG00000033459) #31	SCOC (ENSOGAG00000026414) #32	CLGN (ENSOGAG00000012402) #33	ELMOD2 (ENSOGAG00000006803) #35	UCP1 (ENSOGAG00000006807) #36	TBC1D9 (ENSOGAG00000006809) #37	ENSOGAG00000027660	RNF150 (ENSOGAG00000006816)	ZNF330 (ENSOGAG00000011993)	IL15 (ENSOGAG00000011090)	ENSOGAG00000011094	ENSOGAG00000031567
Euarchontoglires_A	ANCESTRAL SPECIES	9	ENSGT00390000014635	ENSGT00940000154718	ENSGT00940000159744 #7	ENSGT00940000158247 #8	ENSGT00730000111168 #9	ENSGT00390000006284 #10	ENSGT00940000158277 #11	ENSGT00940000163344 #12	ENSGT00940000156295 #15	ENSGT00940000160324 #16	ENSGT00940000155249 #19	ENSGT00940000154953 #20	ENSGT00990000203987	ENSGT00440000037338	ENSGT00390000002565 #21	ENSGT00950000183174.B.a #22	ENSGT00940000157090 #25	ENSGT00390000004827 #27	ENSGT00940000160288 #30	ENSGT00950000183201.b.b.a #31	ENSGT00390000008828 #32	ENSGT00950000182915.a.a.b #33	ENSGT00940000161998 #34	ENSGT00940000156589 #35	ENSGT00940000160382 #36	ENSGT00910000148499	ENSGT00940000157878 #37	ENSGT00940000156171	ENSGT00390000017043	ENSGT00390000016264	ENSGT00940000157587
Glires	ANCESTRAL SPECIES	8	ENSGT00390000014635	ENSGT00940000154718	ENSGT00940000159744 #7	ENSGT00940000158247 #8	ENSGT00730000111168 #9	ENSGT00390000006284 #10	ENSGT00940000158277 #11	ENSGT00940000163344 #12	ENSGT00940000156295 #15	ENSGT00940000160324 #16	ENSGT00940000155249 #19	ENSGT00940000154953 #20	ENSGT00990000203987	ENSGT00440000037338	ENSGT00390000002565 #21	ENSGT00950000183174.B.a #22	ENSGT00940000157090 #25	ENSGT00390000004827 #27	ENSGT00940000160288 #30	ENSGT00950000183201.b.b.a #31	ENSGT00390000008828 #32	ENSGT00950000182915.a.a.b #33	ENSGT00940000161998 #34	ENSGT00940000156589 #35	ENSGT00940000160382 #36	ENSGT00910000148499	ENSGT00940000157878 #37	ENSGT00940000156171	ENSGT00390000017043	ENSGT00390000016264	ENSGT00940000157587
Rodentia	ANCESTRAL SPECIES	13	ENSGT00390000014635	ENSGT00940000154718	ENSGT00940000159744 #7	ENSGT00940000158247 #8	ENSGT00730000111168 #9	ENSGT00390000006284 #10	ENSGT00940000158277 #11	ENSGT00940000163344 #12	ENSGT00940000156295 #15	ENSGT00940000160324 #16	ENSGT00940000155249 #19	ENSGT00940000154953 #20	ENSGT00990000203987	ENSGT00440000037338	ENSGT00390000002565 #21	ENSGT00950000183174.B.a #22	ENSGT00940000157090 #25	ENSGT00390000004827 #27	ENSGT00940000160288 #30	ENSGT00950000183201.b.b.a #31	ENSGT00390000008828 #32	ENSGT00950000182915.a.a.b #33	ENSGT00940000161998 #34	ENSGT00940000156589 #35	ENSGT00940000160382 #36	ENSGT00910000148499	ENSGT00940000157878 #37	ENSGT00940000156171	ENSGT00390000017043	ENSGT00390000016264	ENSGT00940000157587
Rodentia_A	ANCESTRAL SPECIES	24	ENSGT00530000063854	ENSGT00390000014635	ENSGT00940000154718	ENSGT00940000159744 #7	ENSGT00940000158247 #8	ENSGT00730000111168 #9	ENSGT00390000006284 #10	ENSGT00940000158277 #11	ENSGT00940000163344 #12	ENSGT00940000156295 #15	ENSGT00940000160324 #16	ENSGT00940000155249 #19	ENSGT00940000154953 #20	ENSGT00440000037338	ENSGT00390000002565 #21	ENSGT00950000183174.B.a #22	ENSGT00940000157090 #25	ENSGT00390000004827 #27	ENSGT00940000160288 #30	ENSGT00950000183201.b.b.a #31	ENSGT00390000008828 #32	ENSGT00950000182915.a.a.b #33	ENSGT00940000161998 #34	ENSGT00940000156589 #35	ENSGT00940000160382 #36	ENSGT00910000148499	ENSGT00940000157878 #37	ENSGT00940000156171	ENSGT00390000017043	ENSGT00390000016264	ENSGT00940000157587
Sciuridae	ANCESTRAL SPECIES	38	ENSGT00530000063854	ENSGT00390000014635	ENSGT00940000154718	ENSGT00940000159744 #7	ENSGT00940000158247 #8	ENSGT00730000111168 #9	ENSGT00390000006284 #10	ENSGT00940000158277 #11	ENSGT00940000163344 #12	ENSGT00940000156295 #15	ENSGT00940000160324.d #16	ENSGT00940000155249 #19	ENSGT00940000154953 #20	ENSGT00440000037338	ENSGT00390000002565 #21	ENSGT00950000183174.B.a #22	ENSGT00940000157090 #25	ENSGT00390000004827 #27	ENSGT00940000160288 #30	ENSGT00950000183201.b.b.a #31	ENSGT00390000008828 #32	ENSGT00950000182915.a.a.b #33	ENSGT00940000161998 #34	ENSGT00940000156589 #35	ENSGT00940000160382 #36	ENSGT00910000148499	ENSGT00940000157878 #37	ENSGT00940000156171	ENSGT00390000017043	ENSGT00390000016264	ENSGT00940000157587
Marmotini	ANCESTRAL SPECIES	45	ENSGT00530000063854	ENSGT00390000014635	ENSGT00940000154718.vb.a	ENSGT00940000159744 #7	ENSGT00940000158247 #8	ENSGT00730000111168 #9	ENSGT00390000006284 #10	ENSGT00940000158277 #11	ENSGT00940000163344 #12	ENSGT00940000156295 #15	ENSGT00940000160324.d #16	ENSGT00940000155249 #19	ENSGT00940000154953 #20	ENSGT00440000037338	ENSGT00390000002565 #21	ENSGT00950000183174.B.a #22	ENSGT00940000157090 #25	ENSGT00390000004827 #27	ENSGT00940000160288 #30	ENSGT00950000183201.b.b.a #31	ENSGT00390000008828 #32	ENSGT00950000182915.a.a.b #33	ENSGT00940000161998 #34	ENSGT00940000156589 #35	ENSGT00940000160382 #36	ENSGT00910000148499	ENSGT00940000157878 #37	ENSGT00940000156171	ENSGT00390000017043	ENSGT00390000016264	ENSGT00940000157587
Marmotini_b	ANCESTRAL SPECIES	115								ENSGT00940000158277 #11	ENSGT00940000163344 #12	ENSGT00940000156295 #15	ENSGT00940000160324.d #16	ENSGT00940000155249 #19	ENSGT00940000154953 #20	ENSGT00440000037338	ENSGT00390000002565 #21	ENSGT00950000183174.B.a #22	ENSGT00940000157090 #25	ENSGT00390000004827 #27	ENSGT00940000160288 #30	ENSGT00950000183201.b.b.a #31	ENSGT00390000008828.bb.a.a #32	ENSGT00390000008828.bb.a.b #32	ENSGT00950000182915.a.a.b #33	ENSGT00940000161998 #34	ENSGT00940000156589 #35	ENSGT00940000160382 #36	ENSGT00910000148499	ENSGT00940000157878 #37	ENSGT00940000156171	ENSGT00390000017043	ENSGT00390000016264
Squirrel	MODERN SPECIES	135											SLC7A11 (ENSSTOG00000009749) #16	NOCT (ENSSTOG00000014818) #19	ELF2 (ENSSTOG00000025317) #20	MGARP (ENSSTOG00000025833)	NDUFC1 (ENSSTOG00000023590) #21	NAA15 (ENSSTOG00000015163) #22	RAB33B (ENSSTOG00000027511) #25	SETD7 (ENSSTOG00000004420) #27	MGST2 (ENSSTOG00000004437) #30	MAML3 (ENSSTOG00000004454) #31	ENSSTOG00000028529 #32	CLGN (ENSSTOG00000003055) #33	MGAT4D (ENSSTOG00000030895) #34	ELMOD2 (ENSSTOG00000022401) #35	UCP1 (ENSSTOG00000003104) #36	TBC1D9 (ENSSTOG00000001453) #37	RNF150 (ENSSTOG00000029908)	ZNF330 (ENSSTOG00000002498)	IL15 (ENSSTOG00000005776)	INPP4B (ENSSTOG00000005582)	USP38 (ENSSTOG00000025902)
Arctic ground squirrel	MODERN SPECIES	43								PCDH10 (ENSUPAG00010012531) #11	PABPC4L (ENSUPAG00010012516) #12	PCDH18 (ENSUPAG00010012505) #15	SLC7A11 (ENSUPAG00010012469) #16	NOCT (ENSUPAG00010012453) #19	ELF2 (ENSUPAG00010012300) #20	MGARP (ENSUPAG00010012289)	ENSUPAG00010012276 #21	NAA15 (ENSUPAG00010012214) #22	RAB33B (ENSUPAG00010012211) #25	SETD7 (ENSUPAG00010012201) #27	MGST2 (ENSUPAG00010012193) #30	MAML3 (ENSUPAG00010012184) #31	ENSUPAG00010012174 #32	CLGN (ENSUPAG00010012156) #33	MGAT4D (ENSUPAG00010012143) #34	ELMOD2 (ENSUPAG00010012136) #35	UCP1 (ENSUPAG00010012125) #36	ENSUPAG00010012123	TBC1D9 (ENSUPAG00010012079) #37	RNF150 (ENSUPAG00010012043)	ZNF330 (ENSUPAG00010012039)	IL15 (ENSUPAG00010012021)	INPP4B (ENSUPAG00010011818)
Alpin marmot	MODERN SPECIES	5	ENSMMMG00000014539 #7	JADE1 (ENSMMMG00000014553) #8	SCLT1 (ENSMMMG00000014616) #9	C4orf33 (ENSMMMG00000014646) #10	ENSMMMG00000014709	PCDH10 (ENSMMMG00000014721) #11	PABPC4L (ENSMMMG00000014776) #12	ENSMMMG00000014781	ENSMMMG00000014811	PCDH18 (ENSMMMG00000014826) #15	SLC7A11 (ENSMMMG00000014855) #16	NOCT (ENSMMMG00000014877) #19	ELF2 (ENSMMMG00000014882) #20	MGARP (ENSMMMG00000014954)	NDUFC1 (ENSMMMG00000014960) #21	NAA15 (ENSMMMG00000014966) #22	RAB33B (ENSMMMG00000014993) #25	SETD7 (ENSMMMG00000015001) #27	MGST2 (ENSMMMG00000015033) #30	MAML3 (ENSMMMG00000015052) #31	SCOC (ENSMMMG00000015060) #32	ENSMMMG00000015084 #33	GLI2 (ENSMMMG00000015099)	TFCP2L1 (ENSMMMG00000015130)	CLASP1 (ENSMMMG00000015185)	ENSMMMG00000020184	TSN (ENSMMMG00000020190)	ENSMMMG00000020207	ENSMMMG00000020240	ENSMMMG00000020302	ENSMMMG00000020311
Eurasian red squirrel	MODERN SPECIES	18	ENSSVLG00005006219 #7	JADE1 (ENSSVLG00005006252) #8	SCLT1 (ENSSVLG00005006330) #9	C4orf33 (ENSSVLG00005006644) #10	ENSSVLG00005006687	ENSSVLG00005006725	PCDH10 (ENSSVLG00005006755) #11	PABPC4L (ENSSVLG00005006805) #12	PCDH18 (ENSSVLG00005006821) #15	ENSSVLG00005006915 #16	SLC7A11 (ENSSVLG00005006943) #16	NOCT (ENSSVLG00005007008) #19	ENSSVLG00005007043 #20	MGARP (ENSSVLG00005007132)	NDUFC1 (ENSSVLG00005007177) #21	NAA15 (ENSSVLG00005007200) #22	RAB33B (ENSSVLG00005007228) #25	SETD7 (ENSSVLG00005007262) #27	MAML3 (ENSSVLG00005007329) #31	SCOC (ENSSVLG00005007378) #32	CLGN (ENSSVLG00005007446) #33	MGAT4D (ENSSVLG00005007541) #34	ELMOD2 (ENSSVLG00005007698) #35	UCP1 (ENSSVLG00005007755) #36	TBC1D9 (ENSSVLG00005007825) #37	RNF150 (ENSSVLG00005007968)	ZNF330 (ENSSVLG00005008101)	IL15 (ENSSVLG00005008140)	INPP4B (ENSSVLG00005008272)	USP38 (ENSSVLG00005008534)	GAB1 (ENSSVLG00005008645)
Hystricomorpha	ANCESTRAL SPECIES	38	ENSGT00390000014635	ENSGT00940000154718	ENSGT00940000159744 #7	ENSGT00940000158247 #8	ENSGT00730000111168 #9	ENSGT00390000006284 #10	ENSGT00940000158277 #11	ENSGT00940000163344 #12	ENSGT00940000156295 #15	ENSGT00940000160324 #16	ENSGT00940000155249 #19	ENSGT00940000154953 #20	ENSGT00990000203987	ENSGT00440000037338	ENSGT00390000002565 #21	ENSGT00950000183174.B.a #22	ENSGT00940000157090 #25	ENSGT00390000004827 #27	ENSGT00940000160288 #30	ENSGT00950000183201.b.b.a #31	ENSGT00390000008828 #32	ENSGT00950000182915.a.a.b #33	ENSGT00940000161998 #34	ENSGT00940000156589 #35	ENSGT00940000160382 #36	ENSGT00940000158472	ENSGT00940000155201.n	ENSGT01100000263512.a.a.b.d	ENSGT00390000008611	ENSGT00940000160339	ENSGT00390000011932
Hystricomorpha_a	ANCESTRAL SPECIES	34	ENSGT00940000156316	ENSGT00530000063854	ENSGT00390000014635	ENSGT00940000154718	ENSGT00940000159744 #7	ENSGT00940000158247 #8	ENSGT00730000111168 #9	ENSGT00390000006284 #10	ENSGT00940000158277 #11	ENSGT00940000163344 #12	ENSGT00940000156295 #15	ENSGT00940000160324 #16	ENSGT00940000155249 #19	ENSGT00940000154953 #20	ENSGT00390000002565 #21	ENSGT00950000183174.B.a #22	ENSGT00940000157090 #25	ENSGT00390000004827 #27	ENSGT00940000160288 #30	ENSGT00950000183201.b.b.a #31	ENSGT00390000008828 #32	ENSGT00950000182915.a.a.b #33	ENSGT00940000161998 #34	ENSGT00940000156589 #35	ENSGT00940000160382 #36	ENSGT00940000158472	ENSGT00940000155201.n	ENSGT01100000263512.a.a.b.d	ENSGT00390000008611	ENSGT00940000160339	ENSGT00390000011932
Hystricomorpha_b	ANCESTRAL SPECIES	75	ENSGT00940000156316	ENSGT00530000063854	ENSGT00390000014635	ENSGT00940000154718	ENSGT00940000159744 #7	ENSGT00940000158247 #8	ENSGT00730000111168 #9	ENSGT00390000006284 #10	ENSGT00940000158277 #11	ENSGT00940000163344 #12	ENSGT00940000156295 #15	ENSGT00940000160324 #16	ENSGT00940000155249 #19	ENSGT00940000154953 #20	ENSGT00390000002565 #21	ENSGT00950000183174.B.a #22	ENSGT00940000157090 #25	ENSGT00390000004827 #27	ENSGT00940000160288 #30	ENSGT00950000183201.b.b.a #31	ENSGT00390000008828 #32	ENSGT00950000182915.a.a.b #33	ENSGT00940000161998 #34	ENSGT00940000156589 #35	ENSGT00940000160382 #36	ENSGT00940000158472	ENSGT00940000155201.n	ENSGT01100000263512.a.a.b.d	ENSGT00390000008611	ENSGT00940000160339	ENSGT00390000011932
Long-tailed chinchilla	MODERN SPECIES	135	ENSCLAG00000006448	ENSCLAG00000005929	ENSCLAG00000005409 #7	ENSCLAG00000005521	JADE1 (ENSCLAG00000003659) #8	SCLT1 (ENSCLAG00000003786) #9	C4orf33 (ENSCLAG00000003605) #10	ENSCLAG00000003063	PCDH10 (ENSCLAG00000005145) #11	PABPC4L (ENSCLAG00000017628) #12	PCDH18 (ENSCLAG00000005219) #15	SLC7A11 (ENSCLAG00000004373) #16	NOCT (ENSCLAG00000003384) #19	ELF2 (ENSCLAG00000007485) #20	NDUFC1 (ENSCLAG00000004430) #21	NAA15 (ENSCLAG00000003865) #22	RAB33B (ENSCLAG00000003133) #25	SETD7 (ENSCLAG00000005370) #27	MGST2 (ENSCLAG00000005175) #30	MAML3 (ENSCLAG00000004669) #31	SCOC (ENSCLAG00000006150) #32	CLGN (ENSCLAG00000007242) #33	MGAT4D (ENSCLAG00000006558) #34	ELMOD2 (ENSCLAG00000008217) #35	UCP1 (ENSCLAG00000007517) #36	PRMT9 (ENSCLAG00000006351)	TMEM184C (ENSCLAG00000006100)	EDNRA (ENSCLAG00000005819)	TTC29 (ENSCLAG00000004530)	POU4F2 (ENSCLAG00000004187)	SLC10A7 (ENSCLAG00000005576)
Degu	MODERN SPECIES	221								ENSODEG00000019032	PCDH18 (ENSODEG00000004124) #15	SLC7A11 (ENSODEG00000004109) #16	ENSODEG00000004079	ENSODEG00000003088	NOCT (ENSODEG00000003057) #19	ENSODEG00000003035	NDUFC1 (ENSODEG00000003018) #21	NAA15 (ENSODEG00000003007) #22	RAB33B (ENSODEG00000002979) #25	SETD7 (ENSODEG00000002938) #27	MGST2 (ENSODEG00000002892) #30	MAML3 (ENSODEG00000002854) #31	SCOC (ENSODEG00000002813) #32	CLGN (ENSODEG00000002785) #33	MGAT4D (ENSODEG00000002754) #34	ELMOD2 (ENSODEG00000002719) #35	UCP1 (ENSODEG00000002693) #36	ENSODEG00000018807	PRMT9 (ENSODEG00000002652)	TMEM184C (ENSODEG00000002628)	EDNRA (ENSODEG00000002616)
Guinea pig	MODERN SPECIES	7	MFSD8 (ENSCPOG00000015575)	ABHD18 (ENSCPOG00000030889)	ENSCPOG00000034668	ENSCPOG00000033974	PGRMC2 (ENSCPOG00000027001) #7	JADE1 (ENSCPOG00000002256) #8	SCLT1 (ENSCPOG00000002258) #9	C4orf33 (ENSCPOG00000034978) #10	PCDH10 (ENSCPOG00000031544) #11	PABPC4L (ENSCPOG00000033167) #12	PCDH18 (ENSCPOG00000003047) #15	SLC7A11 (ENSCPOG00000013036) #16	NOCT (ENSCPOG00000003827) #19	ELF2 (ENSCPOG00000009449) #20	NDUFC1 (ENSCPOG00000040190) #21	NAA15 (ENSCPOG00000013184) #22	RAB33B (ENSCPOG00000030742) #25	SETD7 (ENSCPOG00000039921) #27	MGST2 (ENSCPOG00000027305) #30	ENSCPOG00000001624 #31	SCOC (ENSCPOG00000032760) #32	CLGN (ENSCPOG00000006963) #33	ELMOD2 (ENSCPOG00000036772) #35	UCP1 (ENSCPOG00000001969) #36	PRMT9 (ENSCPOG00000009218)	TMEM184C (ENSCPOG00000009210)	EDNRA (ENSCPOG00000004559)	ENSCPOG00000040663	TTC29 (ENSCPOG00000007443)	POU4F2 (ENSCPOG00000013770)	SLC10A7 (ENSCPOG00000015391)
Naked mole-rat female	MODERN SPECIES	22	ENSHGLG00000003262	ENSHGLG00000034149	ENSHGLG00000020008	ENSHGLG00000041143	ENSHGLG00000039311	ENSHGLG00000010507 #15	ENSHGLG00000011287	SLC7A11 (ENSHGLG00000014666) #16	ENSHGLG00000005811	NOCT (ENSHGLG00000019383) #19	ELF2 (ENSHGLG00000039789) #20	ENSHGLG00000038060	ENSHGLG00000005918	ENSHGLG00000037172	ENSHGLG00000006316 #21	NAA15 (ENSHGLG00000007395) #22	RAB33B (ENSHGLG00000038757) #25	ENSHGLG00000049841	SETD7 (ENSHGLG00000039947) #27	MGST2 (ENSHGLG00000040336) #30	MAML3 (ENSHGLG00000039990) #31	SCOC (ENSHGLG00000035798) #32	CLGN (ENSHGLG00000000153) #33	ELMOD2 (ENSHGLG00000043621) #35	ENSHGLG00000000166 #36	ENSHGLG00000000179	ENSHGLG00000000200	ENSHGLG00000048262	ENSHGLG00000044620	ENSHGLG00000001009 #37	ENSHGLG00000049997
Rodentia_B	ANCESTRAL SPECIES	30	ENSGT00530000063854	ENSGT00390000014635	ENSGT00940000154718	ENSGT00940000159744 #7	ENSGT00940000158247 #8	ENSGT00730000111168 #9	ENSGT00390000006284 #10	ENSGT00940000158277 #11	ENSGT00940000163344 #12	ENSGT00940000156295 #15	ENSGT00940000160324 #16	ENSGT00940000155249 #19	ENSGT00940000154953 #20	ENSGT00440000037338	ENSGT00390000002565 #21	ENSGT00950000183174.B.a #22	ENSGT00940000157090 #25	ENSGT00390000004827 #27	ENSGT00940000160288 #30	ENSGT00950000183201.b.b.a #31	ENSGT00390000008828 #32	ENSGT00950000182915.a.a.b #33	ENSGT00940000161998 #34	ENSGT00940000156589 #35	ENSGT00940000160382 #36	ENSGT00940000157878 #37	ENSGT00940000156171	ENSGT00390000017043	ENSGT00390000016264	ENSGT00940000157587	ENSGT00960000189829
Myomorpha	ANCESTRAL SPECIES	41	ENSGT00530000063854	ENSGT00390000014635	ENSGT00940000154718	ENSGT00940000159744 #7	ENSGT00940000158247 #8	ENSGT00730000111168 #9	ENSGT00390000006284 #10	ENSGT00940000158277 #11	ENSGT00940000163344 #12	ENSGT00940000156295 #15	ENSGT00940000160324 #16	ENSGT00940000155249 #19	ENSGT00940000154953 #20	ENSGT00440000037338	ENSGT00390000002565 #21	ENSGT00950000183174.B.a #22	ENSGT00940000157090 #25	ENSGT00390000004827 #27	ENSGT00940000160288 #30	ENSGT00950000183201.b.b.a #31	ENSGT00390000008828 #32	ENSGT00950000182915.a.a.b #33	ENSGT00940000161998 #34	ENSGT00940000156589 #35	ENSGT00940000160382 #36	ENSGT00940000157878 #37	ENSGT00940000156171	ENSGT00390000017043	ENSGT00390000016264	ENSGT00940000157587	ENSGT00960000189829
Muroidea	ANCESTRAL SPECIES	56	ENSGT00530000063854	ENSGT00390000014635	ENSGT00940000154718	ENSGT00940000159744 #7	ENSGT00940000158247 #8	ENSGT00730000111168 #9	ENSGT00390000006284 #10	ENSGT00940000158277 #11	ENSGT00940000163344 #12	ENSGT00940000156295 #15	ENSGT00940000160324 #16	ENSGT00940000155249 #19	ENSGT00940000154953 #20	ENSGT00440000037338	ENSGT00390000002565 #21	ENSGT00950000183174.B.a #22	ENSGT00940000157090 #25	ENSGT00390000004827 #27	ENSGT00940000160288 #30	ENSGT00950000183201.b.b.a #31	ENSGT00390000008828 #32	ENSGT00950000182915.a.a.b #33	ENSGT00940000161998 #34	ENSGT00940000156589 #35	ENSGT00940000160382 #36	ENSGT00940000157878 #37	ENSGT00940000156171	ENSGT00390000017043	ENSGT00390000016264	ENSGT00940000157587	ENSGT00960000189829
Muroidea_A	ANCESTRAL SPECIES	5	ENSGT00530000063854	ENSGT00390000014635	ENSGT00940000154718	ENSGT00940000159744 #7	ENSGT00940000158247 #8	ENSGT00730000111168 #9	ENSGT00390000006284 #10	ENSGT00940000158277 #11	ENSGT00940000163344 #12	ENSGT00940000156295 #15	ENSGT00940000160324 #16	ENSGT00940000155249 #19	ENSGT00940000154953 #20	ENSGT00440000037338	ENSGT00390000002565 #21	ENSGT00950000183174.B.a #22	ENSGT00940000157090 #25	ENSGT00390000004827 #27	ENSGT00940000160288 #30	ENSGT00950000183201.b.b.a #31	ENSGT00940000161558	ENSGT00390000013518	ENSGT00990000203589.a.b.a.a	ENSGT00390000008657	ENSGT00730000111188	ENSGT01030000234614.B.a.a.b	ENSGT00940000155313	ENSGT00390000010391	ENSGT01060000248594.e.b	ENSGT00530000063860.b	ENSGT00390000013549.a.a
Cricetidae	ANCESTRAL SPECIES	6	ENSGT00940000154783.f.eb	ENSGT00390000014635	ENSGT00940000154718	ENSGT00940000159744 #7	ENSGT00940000158247 #8	ENSGT00730000111168 #9	ENSGT00390000006284 #10	ENSGT00940000158277 #11	ENSGT00940000163344 #12	ENSGT00940000156295 #15	ENSGT00940000160324 #16	ENSGT00940000155249 #19	ENSGT00940000154953 #20	ENSGT00440000037338	ENSGT00390000002565 #21	ENSGT00950000183174.B.a #22	ENSGT00940000157090 #25	ENSGT00390000004827 #27	ENSGT00940000160288 #30	ENSGT00950000183201.b.b.a #31	ENSGT00940000161558	ENSGT00390000013518	ENSGT00990000203589.a.b.a.a	ENSGT00390000008657	ENSGT00730000111188	ENSGT01030000234614.B.a.a.b	ENSGT00940000155313	ENSGT00390000010391	ENSGT01060000248594.e.b	ENSGT00530000063860.b	ENSGT00390000013549.a.a
Cricetinae	ANCESTRAL SPECIES	13	ENSGT00940000154783.f.eb	ENSGT00390000014635	ENSGT00940000154718	ENSGT00940000159744 #7	ENSGT00940000158247 #8	ENSGT00730000111168 #9	ENSGT00390000006284 #10	ENSGT00940000158277 #11	ENSGT00940000163344 #12	ENSGT00940000156295 #15	ENSGT00940000160324 #16	ENSGT00940000155249 #19	ENSGT00940000154953 #20	ENSGT00440000037338	ENSGT00390000002565 #21	ENSGT00950000183174.B.a #22	ENSGT00940000157090 #25	ENSGT00390000004827 #27	ENSGT00940000160288 #30	ENSGT00950000183201.b.b.a #31	ENSGT00940000161558	ENSGT00390000013518	ENSGT00990000203589.a.b.a.a	ENSGT00390000008657	ENSGT00730000111188	ENSGT01030000234614.B.a.a.b	ENSGT00940000155313	ENSGT00390000010391	ENSGT01060000248594.e.b	ENSGT00530000063860.b	ENSGT00390000013549.a.a
Chinese hamster chok1gshd	DUPLICATION
Chinese hamster chok1gshd	MODERN SPECIES	352	Pgrmc2 (ENSCGRG00001020177) #7	Jade1 (ENSCGRG00001001195) #8	Sclt1 (ENSCGRG00001013488) #9	D3Ertd751e (ENSCGRG00001017685) #10	ENSCGRG00001024232	Pcdh10 (ENSCGRG00001013755) #11	Pabpc4l (ENSCGRG00001002070) #12	Pcdh18 (ENSCGRG00001021760) #15	Slc7a11 (ENSCGRG00001013535) #16	ENSCGRG00001017707	ENSCGRG00001021385	Noct (ENSCGRG00001021050) #19	Elf2 (ENSCGRG00001017608) #20	Mgarp (ENSCGRG00001021913)	Ndufc1 (ENSCGRG00001021397) #21	ENSCGRG00001016024 #22	Rab33b (ENSCGRG00001016897) #25	Setd7 (ENSCGRG00001021541) #27	Mgst2 (ENSCGRG00001023658) #30	ENSCGRG00001015206	Maml3 (ENSCGRG00001013876) #31	Foxo1 (ENSCGRG00001010126)	Cog6 (ENSCGRG00001023122)	Lhfp (ENSCGRG00001014062)	ENSCGRG00001012241	Nhlrc3 (ENSCGRG00001000190)	Proser1 (ENSCGRG00001018627)	Stoml3 (ENSCGRG00001010368)	Frem2 (ENSCGRG00001021708)	Ufm1 (ENSCGRG00001021178)	ENSCGRG00001016565
Chinese hamster chok1gshd	MODERN SPECIES	284	Sox14 (ENSCGRG00001006423)	Il20rb (ENSCGRG00001014104)	Nck1 (ENSCGRG00001010690)	Slc35g2 (ENSCGRG00001010655)	Stag1 (ENSCGRG00001010804)	Pccb (ENSCGRG00001010499)	ENSCGRG00001022650	Msl2 (ENSCGRG00001018586)	Ppp2r3a (ENSCGRG00001014468)	ENSCGRG00001000374	Ephb1 (ENSCGRG00001023566)	Ky (ENSCGRG00001005688)	Cep63 (ENSCGRG00001022029)	Anapc13 (ENSCGRG00001008030)	Amotl2 (ENSCGRG00001004406)	ENSCGRG00001024987 #22	ENSCGRG00001022954	Slco2a1 (ENSCGRG00001020259)	Rab6b (ENSCGRG00001013041)	Srprb (ENSCGRG00001018121)	Trf (ENSCGRG00001011853)	Inhca (ENSCGRG00001005380)	Topbp1 (ENSCGRG00001008992)	Cdv3 (ENSCGRG00001001290)	Bfsp2 (ENSCGRG00001022377)	Tmem108 (ENSCGRG00001020314)	Nphp3 (ENSCGRG00001018388)	Uba5 (ENSCGRG00001009690)	Ackr4 (ENSCGRG00001010436)	Acad11 (ENSCGRG00001018144)	Dnajc13 (ENSCGRG00001006218)
Golden Hamster	MODERN SPECIES	690	2510002D24Rik (ENSMAUG00000006315)	Mrpl40 (ENSMAUG00000015350)	Hira (ENSMAUG00000013816)	Mzt2 (ENSMAUG00000011034)	Fgd4 (ENSMAUG00000009523)	Dnm1l (ENSMAUG00000010409)	Yars2 (ENSMAUG00000012334)	Pkp2 (ENSMAUG00000010450)	Pcdh18 (ENSMAUG00000008607) #15	Slc7a11 (ENSMAUG00000015486) #16	Noct (ENSMAUG00000013688) #19	ENSMAUG00000010499	ENSMAUG00000007960	Mgarp (ENSMAUG00000017626)	Ndufc1 (ENSMAUG00000017283) #21	ENSMAUG00000016687 #22	Rab33b (ENSMAUG00000014030) #25	Setd7 (ENSMAUG00000011555) #27	Mgst2 (ENSMAUG00000009690) #30	Maml3 (ENSMAUG00000001409) #31	Foxo1 (ENSMAUG00000000234)	Cog6 (ENSMAUG00000000435)	Nhlrc3 (ENSMAUG00000005924)	ENSMAUG00000004106	Stoml3 (ENSMAUG00000007821)	Frem2 (ENSMAUG00000005257)	ENSMAUG00000017869	Ufm1 (ENSMAUG00000018178)	Trpc4 (ENSMAUG00000001198)	Postn (ENSMAUG00000019919)	ENSMAUG00000014984
Cricetidae_B	ANCESTRAL SPECIES	3	ENSGT00940000154783.f.eb	ENSGT00390000014635	ENSGT00940000154718	ENSGT00940000159744 #7	ENSGT00940000158247 #8	ENSGT00730000111168 #9	ENSGT00390000006284 #10	ENSGT00940000158277 #11	ENSGT00940000163344 #12	ENSGT00940000156295 #15	ENSGT00940000160324 #16	ENSGT00940000155249 #19	ENSGT00940000154953 #20	ENSGT00440000037338	ENSGT00390000002565 #21	ENSGT00950000183174.B.a #22	ENSGT00940000157090 #25	ENSGT00390000004827 #27	ENSGT00940000160288 #30	ENSGT00950000183201.b.b.a #31	ENSGT00940000161558	ENSGT00390000013518	ENSGT00990000203589.a.b.a.a	ENSGT00390000008657	ENSGT00730000111188	ENSGT01030000234614.B.a.a.b	ENSGT00940000155313	ENSGT00390000010391	ENSGT01060000248594.e.b	ENSGT00530000063860.b	ENSGT00390000013549.a.a
Northern American deer mouse	MODERN SPECIES	19	Bbs12 (ENSPEMG00000012255)	Fgf2 (ENSPEMG00000016190)	Nudt6 (ENSPEMG00000005707)	Spata5 (ENSPEMG00000011499)	Spry1 (ENSPEMG00000030492)	ENSPEMG00000028306	Ankrd50 (ENSPEMG00000000443)	ENSPEMG00000014607	Pcdh18 (ENSPEMG00000008783) #15	Slc7a11 (ENSPEMG00000004847) #16	ENSPEMG00000000564	Noct (ENSPEMG00000016096) #19	Elf2 (ENSPEMG00000027602) #20	Mgarp (ENSPEMG00000016128)	Ndufc1 (ENSPEMG00000014918) #21	Naa15 (ENSPEMG00000018617) #22	Rab33b (ENSPEMG00000029206) #25	Setd7 (ENSPEMG00000014852) #27	Mgst2 (ENSPEMG00000013067) #30	Maml3 (ENSPEMG00000011661) #31	ENSPEMG00000008190	Cog6 (ENSPEMG00000002808)	Lhfp (ENSPEMG00000000258)	Nhlrc3 (ENSPEMG00000018137)	Proser1 (ENSPEMG00000017174)	Stoml3 (ENSPEMG00000016865)	Frem2 (ENSPEMG00000013398)	ENSPEMG00000025612	Ufm1 (ENSPEMG00000012238)	Trpc4 (ENSPEMG00000009383)	Postn (ENSPEMG00000013782)
Prairie vole	MODERN SPECIES		ENSMOCG00000015440	ENSMOCG00000006069	Pcdh10 (ENSMOCG00000020777) #11	ENSMOCG00000014985	ENSMOCG00000007049	Pabpc4l (ENSMOCG00000007551) #12	ENSMOCG00000009837	ENSMOCG00000022370	Pcdh18 (ENSMOCG00000010974) #15	Slc7a11 (ENSMOCG00000022163) #16	Noct (ENSMOCG00000013676) #19	Elf2 (ENSMOCG00000006447) #20	ENSMOCG00000016521	Mgarp (ENSMOCG00000019900)	Ndufc1 (ENSMOCG00000010546) #21	Naa15 (ENSMOCG00000017390) #22	Rab33b (ENSMOCG00000019866) #25	Setd7 (ENSMOCG00000005547) #27	Mgst2 (ENSMOCG00000010904) #30	Maml3 (ENSMOCG00000019491) #31	Foxo1 (ENSMOCG00000020911)	Cog6 (ENSMOCG00000016621)	Lhfp (ENSMOCG00000003780)	Nhlrc3 (ENSMOCG00000020191)	Proser1 (ENSMOCG00000001872)	Stoml3 (ENSMOCG00000009247)	Frem2 (ENSMOCG00000014700)	Ufm1 (ENSMOCG00000001316)	ENSMOCG00000008401	Trpc4 (ENSMOCG00000022081)	Postn (ENSMOCG00000015092)
Murinae	ANCESTRAL SPECIES	5	ENSGT00530000063854	ENSGT00390000014635	ENSGT00940000154718	ENSGT00940000159744 #7	ENSGT00940000158247 #8	ENSGT00730000111168 #9	ENSGT00390000006284 #10	ENSGT00940000158277 #11	ENSGT00940000163344 #12	ENSGT00940000156295 #15	ENSGT00940000160324 #16	ENSGT00940000155249 #19	ENSGT00940000154953 #20	ENSGT00440000037338	ENSGT00390000002565 #21	ENSGT00950000183174.B.a #22	ENSGT00940000157090 #25	ENSGT00390000004827 #27	ENSGT00940000160288 #30	ENSGT00950000183201.b.b.a #31	ENSGT00940000161558	ENSGT00390000013518	ENSGT00990000203589.a.b.a.a	ENSGT00390000008657	ENSGT00730000111188	ENSGT01030000234614.B.a.a.b	ENSGT00940000155313	ENSGT00390000010391	ENSGT01060000248594.e.b	ENSGT00530000063860.b	ENSGT00390000013549.a.a
Mus	ANCESTRAL SPECIES	7	ENSGT00530000063854	ENSGT00390000014635	ENSGT00940000154718	ENSGT00940000159744 #7	ENSGT00940000158247 #8	ENSGT00730000111168 #9	ENSGT00390000006284 #10	ENSGT00940000158277 #11	ENSGT00940000163344 #12	ENSGT00940000156295 #15	ENSGT00940000160324 #16	ENSGT00940000155249 #19	ENSGT00940000154953 #20	ENSGT00440000037338	ENSGT00390000002565 #21	ENSGT00950000183174.B.a #22	ENSGT00940000157090 #25	ENSGT00390000004827 #27	ENSGT00940000160288 #30	ENSGT00950000183201.b.b.a #31	ENSGT00940000161558	ENSGT00390000013518	ENSGT00990000203589.a.b.a.a	ENSGT00390000008657	ENSGT00730000111188	ENSGT01030000234614.B.a.a.b	ENSGT00940000155313	ENSGT00390000010391	ENSGT01060000248594.e.b	ENSGT00530000063860.b	ENSGT00390000013549.a.a
Mus_A	ANCESTRAL SPECIES	9	ENSGT00530000063854	ENSGT00390000014635	ENSGT00940000154718	ENSGT00940000159744 #7	ENSGT00940000158247 #8	ENSGT00730000111168 #9	ENSGT00390000006284 #10	ENSGT00940000158277 #11	ENSGT00940000163344 #12	ENSGT00940000156295 #15	ENSGT00940000160324 #16	ENSGT00940000155249 #19	ENSGT00940000154953 #20	ENSGT00440000037338	ENSGT00390000002565 #21	ENSGT00950000183174.B.a #22	ENSGT00940000157090 #25	ENSGT00390000004827 #27	ENSGT00940000160288 #30	ENSGT00950000183201.b.b.a #31	ENSGT00940000161558	ENSGT00390000013518	ENSGT00990000203589.a.b.a.a	ENSGT00390000008657	ENSGT00730000111188	ENSGT01030000234614.B.a.a.b	ENSGT00940000155313	ENSGT00390000010391	ENSGT01060000248594.e.b	ENSGT00530000063860.b	ENSGT00390000013549.a.a
Mus_B	ANCESTRAL SPECIES	8	ENSGT00530000063854	ENSGT00390000014635	ENSGT00940000154718	ENSGT00940000159744 #7	ENSGT00940000158247 #8	ENSGT00730000111168 #9	ENSGT00390000006284 #10	ENSGT00940000158277 #11	ENSGT00940000163344 #12	ENSGT00940000156295 #15	ENSGT00940000160324 #16	ENSGT00940000155249 #19	ENSGT00940000154953 #20	ENSGT00440000037338	ENSGT00390000002565 #21	ENSGT00950000183174.B.a #22	ENSGT00940000157090 #25	ENSGT00390000004827 #27	ENSGT00940000160288 #30	ENSGT00950000183201.b.b.a #31	ENSGT00940000161558	ENSGT00390000013518	ENSGT00990000203589.a.b.a.a	ENSGT00390000008657	ENSGT00730000111188	ENSGT01030000234614.B.a.a.b	ENSGT00940000155313	ENSGT00390000010391	ENSGT01060000248594.e.b	ENSGT00530000063860.b	ENSGT00390000013549.a.a
Mus_C	ANCESTRAL SPECIES	6	ENSGT00530000063854	ENSGT00390000014635	ENSGT00940000154718	ENSGT00940000159744 #7	ENSGT00940000158247 #8	ENSGT00730000111168 #9	ENSGT00390000006284 #10	ENSGT00940000158277 #11	ENSGT00940000163344 #12	ENSGT00940000156295 #15	ENSGT00940000160324 #16	ENSGT00940000155249 #19	ENSGT00940000154953 #20	ENSGT00440000037338	ENSGT00390000002565 #21	ENSGT00950000183174.B.a #22	ENSGT00940000157090 #25	ENSGT00390000004827 #27	ENSGT00940000160288 #30	ENSGT00950000183201.b.b.a #31	ENSGT00940000161558	ENSGT00390000013518	ENSGT00990000203589.a.b.a.a	ENSGT00390000008657	ENSGT00730000111188	ENSGT01030000234614.B.a.a.b	ENSGT00940000155313	ENSGT00390000010391	ENSGT01060000248594.e.b	ENSGT00530000063860.b	ENSGT00390000013549.a.a
Steppe mouse	MODERN SPECIES	3328												Noct (ENSMSIG00000012523) #19	Elf2 (ENSMSIG00000012468) #20	Mgarp (ENSMSIG00000012425)	ENSMSIG00000012393 #21	Naa15 (ENSMSIG00000012304) #22	Rab33b (ENSMSIG00000012280) #25	Setd7 (ENSMSIG00000012236) #27	ENSMSIG00000012224 #30	ENSMSIG00000012216	Maml3 (ENSMSIG00000012162) #31	Foxo1 (ENSMSIG00000012146)	ENSMSIG00000012139	Cog6 (ENSMSIG00000011986)	Lhfp (ENSMSIG00000011969)	Nhlrc3 (ENSMSIG00000011909)	Proser1 (ENSMSIG00000011889)	Stoml3 (ENSMSIG00000011881)	Frem2 (ENSMSIG00000011850)	ENSMSIG00000011836	Gm10985 (ENSMSIG00000011807)
spretus	MODERN SPECIES	12	MGP_SPRETEiJ_G0025895	Fundc2b (MGP_SPRETEiJ_G0025896)	MGP_SPRETEiJ_G0025897	Pgrmc2 (MGP_SPRETEiJ_G0025898) #7	Jade1 (MGP_SPRETEiJ_G0025899) #8	Sclt1 (MGP_SPRETEiJ_G0025900) #9	D3Ertd751e (MGP_SPRETEiJ_G0025901) #10	Pcdh10 (MGP_SPRETEiJ_G0025902) #11	Pabpc4l (MGP_SPRETEiJ_G0025903) #12	Pcdh18 (MGP_SPRETEiJ_G0025904) #15	Slc7a11 (MGP_SPRETEiJ_G0025905) #16	Noct (MGP_SPRETEiJ_G0025906) #19	Elf2 (MGP_SPRETEiJ_G0025907) #20	Mgarp (MGP_SPRETEiJ_G0025908)	Ndufc1 (MGP_SPRETEiJ_G0025909) #21	Naa15 (MGP_SPRETEiJ_G0025910) #22	Rab33b (MGP_SPRETEiJ_G0025911) #25	Setd7 (MGP_SPRETEiJ_G0025912) #27	MGP_SPRETEiJ_G0025913 #30	Maml3 (MGP_SPRETEiJ_G0025914) #31	Foxo1 (MGP_SPRETEiJ_G0025915)	Cog6 (MGP_SPRETEiJ_G0025916)	Lhfp (MGP_SPRETEiJ_G0025917)	Nhlrc3 (MGP_SPRETEiJ_G0025918)	Proser1 (MGP_SPRETEiJ_G0025919)	Stoml3 (MGP_SPRETEiJ_G0025920)	Frem2 (MGP_SPRETEiJ_G0025921)	MGP_SPRETEiJ_G0025922	Trpc4 (MGP_SPRETEiJ_G0025923)	Postn (MGP_SPRETEiJ_G0025924)	Supt20 (MGP_SPRETEiJ_G0025925)
Mouse	MODERN SPECIES	12	Abhd18 (ENSMUSG00000037818)	Fundc2b (ENSMUSG00000074619)	Larp1b (ENSMUSG00000025762)	Pgrmc2 (ENSMUSG00000049940) #7	Jade1 (ENSMUSG00000025764) #8	Sclt1 (ENSMUSG00000059834) #9	D3Ertd751e (ENSMUSG00000025766) #10	Pcdh10 (ENSMUSG00000049100) #11	Pabpc4l (ENSMUSG00000090919) #12	Pcdh18 (ENSMUSG00000037892) #15	Slc7a11 (ENSMUSG00000027737) #16	Noct (ENSMUSG00000023087) #19	Elf2 (ENSMUSG00000037174) #20	Mgarp (ENSMUSG00000037161)	Ndufc1 (ENSMUSG00000037152) #21	Naa15 (ENSMUSG00000063273) #22	Rab33b (ENSMUSG00000027739) #25	Setd7 (ENSMUSG00000037111) #27	Mgst2 (ENSMUSG00000074604) #30	Maml3 (ENSMUSG00000061143) #31	Foxo1 (ENSMUSG00000044167)	Cog6 (ENSMUSG00000027742)	Lhfp (ENSMUSG00000048332)	Nhlrc3 (ENSMUSG00000042997)	Proser1 (ENSMUSG00000049504)	Stoml3 (ENSMUSG00000027744)	Frem2 (ENSMUSG00000037016)	Gm10985 (ENSMUSG00000078742)	Ufm1 (ENSMUSG00000027746)	Trpc4 (ENSMUSG00000027748)	Postn (ENSMUSG00000027750)
Ryukyu mouse	MODERN SPECIES	12	MGP_CAROLIEiJ_G0024960	MGP_CAROLIEiJ_G0024961	MGP_CAROLIEiJ_G0024962	Pgrmc2 (MGP_CAROLIEiJ_G0024963) #7	Jade1 (MGP_CAROLIEiJ_G0024964) #8	Sclt1 (MGP_CAROLIEiJ_G0024965) #9	D3Ertd751e (MGP_CAROLIEiJ_G0024966) #10	Pcdh10 (MGP_CAROLIEiJ_G0024967) #11	Pabpc4l (MGP_CAROLIEiJ_G0024968) #12	Pcdh18 (MGP_CAROLIEiJ_G0024969) #15	Slc7a11 (MGP_CAROLIEiJ_G0024970) #16	Noct (MGP_CAROLIEiJ_G0024971) #19	Elf2 (MGP_CAROLIEiJ_G0024972) #20	Mgarp (MGP_CAROLIEiJ_G0024973)	Ndufc1 (MGP_CAROLIEiJ_G0024974) #21	Naa15 (MGP_CAROLIEiJ_G0024975) #22	Rab33b (MGP_CAROLIEiJ_G0024976) #25	Setd7 (MGP_CAROLIEiJ_G0024977) #27	Mgst2 (MGP_CAROLIEiJ_G0024978) #30	Maml3 (MGP_CAROLIEiJ_G0024979) #31	Foxo1 (MGP_CAROLIEiJ_G0024980)	Cog6 (MGP_CAROLIEiJ_G0024981)	Lhfp (MGP_CAROLIEiJ_G0024982)	Nhlrc3 (MGP_CAROLIEiJ_G0024983)	Proser1 (MGP_CAROLIEiJ_G0024984)	Stoml3 (MGP_CAROLIEiJ_G0024985)	Frem2 (MGP_CAROLIEiJ_G0024986)	MGP_CAROLIEiJ_G0024987	Trpc4 (MGP_CAROLIEiJ_G0024988)	Postn (MGP_CAROLIEiJ_G0024989)	Supt20 (MGP_CAROLIEiJ_G0024990)
Shrew mouse	MODERN SPECIES	17	Abhd18 (MGP_PahariEiJ_G0026401)	Fundc2b (MGP_PahariEiJ_G0026402)	MGP_PahariEiJ_G0026403	Pgrmc2 (MGP_PahariEiJ_G0026404) #7	Jade1 (MGP_PahariEiJ_G0026405) #8	Sclt1 (MGP_PahariEiJ_G0026406) #9	D3Ertd751e (MGP_PahariEiJ_G0026407) #10	Pcdh10 (MGP_PahariEiJ_G0026408) #11	Pabpc4l (MGP_PahariEiJ_G0026409) #12	Pcdh18 (MGP_PahariEiJ_G0026410) #15	Slc7a11 (MGP_PahariEiJ_G0026411) #16	Noct (MGP_PahariEiJ_G0026412) #19	Elf2 (MGP_PahariEiJ_G0026413) #20	Mgarp (MGP_PahariEiJ_G0026414)	Ndufc1 (MGP_PahariEiJ_G0026415) #21	Naa15 (MGP_PahariEiJ_G0026416) #22	Rab33b (MGP_PahariEiJ_G0026417) #25	Setd7 (MGP_PahariEiJ_G0026418) #27	MGP_PahariEiJ_G0026419 #30	Maml3 (MGP_PahariEiJ_G0026420) #31	Foxo1 (MGP_PahariEiJ_G0026421)	Cog6 (MGP_PahariEiJ_G0026422)	Lhfp (MGP_PahariEiJ_G0026423)	Nhlrc3 (MGP_PahariEiJ_G0026424)	Proser1 (MGP_PahariEiJ_G0026425)	Stoml3 (MGP_PahariEiJ_G0026426)	Frem2 (MGP_PahariEiJ_G0026427)	Ufm1 (MGP_PahariEiJ_G0026428)	Trpc4 (MGP_PahariEiJ_G0026429)	Postn (MGP_PahariEiJ_G0026430)	Supt20 (MGP_PahariEiJ_G0026431)
Rat	MODERN SPECIES	11	LOC691033 (ENSRNOG00000028373)	LOC499607 (ENSRNOG00000042535)	AABR07010524.1 (ENSRNOG00000029493)	RGD1307595 (ENSRNOG00000011239)	LOC120100814 (ENSRNOG00000069607)	LOC365791 (ENSRNOG00000069904)	LOC102550446 (ENSRNOG00000065262)	LOC120093152 (ENSRNOG00000038242)	LOC120100815 (ENSRNOG00000066067)	Pcdh18 (ENSRNOG00000009949) #15	Slc7a11 (ENSRNOG00000010210) #16	Noct (ENSRNOG00000010799) #19	Elf2 (ENSRNOG00000010815) #20	Mgarp (ENSRNOG00000011923)	Ndufc1 (ENSRNOG00000070835) #21	Naa15 (ENSRNOG00000012385) #22	Rab33b (ENSRNOG00000013035) #25	Setd7 (ENSRNOG00000013045) #27	Mgst2 (ENSRNOG00000061857) #30	Maml3 (ENSRNOG00000067338) #31	ENSRNOG00000068600	Foxo1 (ENSRNOG00000013397)	Cog6 (ENSRNOG00000013660)	Lhfpl6 (ENSRNOG00000014153)	Nhlrc3 (ENSRNOG00000070230)	Nhlrc3 (ENSRNOG00000010843)	Proser1 (ENSRNOG00000010980)	Stoml3 (ENSRNOG00000011006)	Frem2 (ENSRNOG00000021670)	Trpc4 (ENSRNOG00000011133)	Postn (ENSRNOG00000012660)
Upper Galilee mountains blind mole rat	MODERN SPECIES	1233												Noct (ENSNGAG00000010135) #19	Elf2 (ENSNGAG00000011982) #20	ENSNGAG00000015210	Ndufc1 (ENSNGAG00000019599) #21	Naa15 (ENSNGAG00000020578) #22	Rab33b (ENSNGAG00000015807) #25	ENSNGAG00000016240 #27	Mgst2 (ENSNGAG00000017878) #30	Maml3 (ENSNGAG00000020253) #31	Scoc (ENSNGAG00000011163) #32	Clgn (ENSNGAG00000013400) #33	Mgat4d (ENSNGAG00000019938) #34	Elmod2 (ENSNGAG00000001153) #35	Ucp1 (ENSNGAG00000003442) #36	Tbc1d9 (ENSNGAG00000007389) #37	Rnf150 (ENSNGAG00000018575)	ENSNGAG00000001858	Zfp330 (ENSNGAG00000004253)	ENSNGAG00000003516	Inpp4b (ENSNGAG00000004652)
Kangaroo rat	MODERN SPECIES	438											Pcdh18 (ENSDORG00000001570) #15	Slc7a11 (ENSDORG00000008559) #16	Noct (ENSDORG00000000869) #19	ENSDORG00000024633	Ndufc1 (ENSDORG00000005485) #21	Naa15 (ENSDORG00000005486) #22	Rab33b (ENSDORG00000023618) #25	Setd7 (ENSDORG00000004857) #27	Mgst2 (ENSDORG00000009124) #30	ENSDORG00000009125 #31	Scoc (ENSDORG00000028512) #32	Clgn (ENSDORG00000000175) #33	Elmod2 (ENSDORG00000026741) #35	Ucp1 (ENSDORG00000001952) #36	Tbc1d9 (ENSDORG00000001961) #37	Rnf150 (ENSDORG00000012239)	Zfp330 (ENSDORG00000010322)	Il15 (ENSDORG00000014153)	Inpp4b (ENSDORG00000014154)	ENSDORG00000023817	Usp38 (ENSDORG00000004940)
Lagomorpha	ANCESTRAL SPECIES	69											ENSGT00940000160324 #16	ENSGT00940000155249 #19	ENSGT00940000154953 #20	ENSGT00440000037338	ENSGT00390000002565 #21	ENSGT00950000183174.B.a #22	ENSGT00390000004827 #27	ENSGT00940000160288 #30	ENSGT00950000183201.b.b.a #31	ENSGT00390000008828 #32	ENSGT00950000182915.a.a.b #33	ENSGT00940000161998 #34	ENSGT00940000156589 #35	ENSGT00940000160382 #36	ENSGT00940000157878 #37	ENSGT00940000156171	ENSGT00390000017043	ENSGT00390000016264	ENSGT00940000157587	ENSGT00940000158403	ENSGT00940000156801
Rabbit	MODERN SPECIES	6	PABPC4L (ENSOCUG00000028226) #12	ENSOCUG00000038661	ENSOCUG00000036673	ENSOCUG00000035926	ENSOCUG00000030197	ENSOCUG00000026992	ENSOCUG00000032687	PCDH18 (ENSOCUG00000009057) #15	ENSOCUG00000009004	ENSOCUG00000002051	SLC7A11 (ENSOCUG00000001662) #16	NOCT (ENSOCUG00000005465) #19	ELF2 (ENSOCUG00000003711) #20	MGARP (ENSOCUG00000006499)	NDUFC1 (ENSOCUG00000004419) #21	NAA15 (ENSOCUG00000017331) #22	SETD7 (ENSOCUG00000009367) #27	ENSOCUG00000009370 #30	MAML3 (ENSOCUG00000009376) #31	ENSOCUG00000023227	ENSOCUG00000006591 #32	CLGN (ENSOCUG00000006597) #33	MGAT4D (ENSOCUG00000006809) #34	ELMOD2 (ENSOCUG00000006810) #35	UCP1 (ENSOCUG00000002297) #36	TBC1D9 (ENSOCUG00000005559) #37	RNF150 (ENSOCUG00000013467)	ZNF330 (ENSOCUG00000014580)	ENSOCUG00000038390	IL15 (ENSOCUG00000008827)	ENSOCUG00000036398
Pika	MODERN SPECIES	1940															NDUFC1 (ENSOPRG00000014256) #21	NAA15 (ENSOPRG00000014269) #22
Tree shrew	MODERN SPECIES	1771														ENSTBEG00000017516	ENSTBEG00000009638	NAA15 (ENSTBEG00000009649) #22	SETD7 (ENSTBEG00000010481) #27
Laurasiatheria	ANCESTRAL SPECIES	11	ENSGT00390000014635	ENSGT00940000154718	ENSGT00940000159744 #7	ENSGT00940000158247 #8	ENSGT00730000111168 #9	ENSGT00390000006284 #10	ENSGT00940000158277 #11	ENSGT00940000163344 #12	ENSGT00940000156295 #15	ENSGT00940000160324 #16	ENSGT00940000155249 #19	ENSGT00940000154953 #20	ENSGT00990000203987	ENSGT00440000037338	ENSGT00390000002565 #21	ENSGT00950000183174.B.a #22	ENSGT00940000157090 #25	ENSGT00390000004827 #27	ENSGT00940000160288 #30	ENSGT00950000183201.b.b.a #31	ENSGT00390000008828 #32	ENSGT00950000182915.a.a.b #33	ENSGT00940000161998 #34	ENSGT00940000156589 #35	ENSGT00940000160382 #36	ENSGT00910000148499	ENSGT00940000157878 #37	ENSGT00940000156171	ENSGT00390000017043	ENSGT00390000016264	ENSGT00940000157587
Eulipotyphla	ANCESTRAL SPECIES																	ENSGT00950000183174.B.a #22
Hedgehog	MODERN SPECIES	5747																NAA15 (ENSEEUG00000004913) #22
Common shrew	MODERN SPECIES	5236																NAA15 (ENSSARG00000012301) #22
Laurasiatheria_a	ANCESTRAL SPECIES	8	ENSGT00390000014635	ENSGT00940000154718	ENSGT00940000159744 #7	ENSGT00940000158247 #8	ENSGT00730000111168 #9	ENSGT00390000006284 #10	ENSGT00940000158277 #11	ENSGT00940000163344 #12	ENSGT00940000156295 #15	ENSGT00940000160324 #16	ENSGT00940000155249 #19	ENSGT00940000154953 #20	ENSGT00990000203987	ENSGT00440000037338	ENSGT00390000002565 #21	ENSGT00950000183174.B.a #22	ENSGT00940000157090 #25	ENSGT00390000004827 #27	ENSGT00940000160288 #30	ENSGT00950000183201.b.b.a #31	ENSGT00390000008828 #32	ENSGT00950000182915.a.a.b #33	ENSGT00940000161998 #34	ENSGT00940000156589 #35	ENSGT00940000160382 #36	ENSGT00910000148499	ENSGT00940000157878 #37	ENSGT00940000156171	ENSGT00390000017043	ENSGT00390000016264	ENSGT00940000157587
Artiodactyla	ANCESTRAL SPECIES	12	ENSGT00390000014635	ENSGT00940000154718	ENSGT00940000159744 #7	ENSGT00940000158247 #8	ENSGT00730000111168 #9	ENSGT00390000006284 #10	ENSGT00940000158277 #11	ENSGT00940000163344 #12	ENSGT00940000156295 #15	ENSGT00940000160324 #16	ENSGT00940000155249 #19	ENSGT00940000154953 #20	ENSGT00990000203987	ENSGT00440000037338	ENSGT00390000002565 #21	ENSGT00950000183174.B.a #22	ENSGT00940000157090 #25	ENSGT00390000004827 #27	ENSGT00940000160288 #30	ENSGT00950000183201.b.b.a #31	ENSGT00390000008828 #32	ENSGT00950000182915.a.a.b #33	ENSGT00940000161998 #34	ENSGT00940000156589 #35	ENSGT00940000160382 #36	ENSGT00910000148499	ENSGT00940000157878 #37	ENSGT00940000156171	ENSGT00390000017043	ENSGT00390000016264	ENSGT00940000157587
Suina	ANCESTRAL SPECIES	22	ENSGT00390000014635	ENSGT00940000154718	ENSGT00940000159744 #7	ENSGT00940000158247 #8	ENSGT00730000111168 #9	ENSGT00390000006284.ub #10	ENSGT00940000158277 #11	ENSGT00940000163344 #12	ENSGT00940000156295 #15	ENSGT00940000160324 #16	ENSGT00940000155249 #19	ENSGT00940000154953 #20	ENSGT00990000203987	ENSGT00440000037338	ENSGT00390000002565 #21	ENSGT00950000183174.B.a #22	ENSGT00940000157090 #25	ENSGT00390000004827 #27	ENSGT00940000160288 #30	ENSGT00950000183201.b.b.a #31	ENSGT00390000008828 #32	ENSGT00950000182915.a.a.b #33	ENSGT00940000161998 #34	ENSGT00940000156589 #35	ENSGT00940000157878 #37	ENSGT00940000156171	ENSGT00390000017043	ENSGT00390000016264	ENSGT00940000157587	ENSGT00940000158403	ENSGT00940000156801
Chacoan peccary	MODERN SPECIES	120	MFSD8 (ENSCWAG00000019704)	ABHD18 (ENSCWAG00000020703)	LARP1B (ENSCWAG00000020742)	PGRMC2 (ENSCWAG00000020988) #7	JADE1 (ENSCWAG00000021004) #8	SCLT1 (ENSCWAG00000021033) #9	ENSCWAG00000021054 #10	PCDH10 (ENSCWAG00000021067) #11	PABPC4L (ENSCWAG00000021080) #12	PCDH18 (ENSCWAG00000021090) #15	SLC7A11 (ENSCWAG00000021117) #16	NOCT (ENSCWAG00000021150) #19	ELF2 (ENSCWAG00000021165) #20	MGARP (ENSCWAG00000021176)	ENSCWAG00000021181 #21	NAA15 (ENSCWAG00000021191) #22	RAB33B (ENSCWAG00000021204) #25	SETD7 (ENSCWAG00000021207) #27	MGST2 (ENSCWAG00000021227) #30	MAML3 (ENSCWAG00000021238) #31	SCOC (ENSCWAG00000021260) #32	CLGN (ENSCWAG00000021275) #33	MGAT4D (ENSCWAG00000007811) #34	ELMOD2 (ENSCWAG00000008046) #35	TBC1D9 (ENSCWAG00000008142) #37	RNF150 (ENSCWAG00000008342)	ZNF330 (ENSCWAG00000008534)	IL15 (ENSCWAG00000008557)	INPP4B (ENSCWAG00000008695)	USP38 (ENSCWAG00000009147)	GAB1 (ENSCWAG00000009243)
Pig	MODERN SPECIES	16	LARP1B (ENSSSCG00000034280)	PGRMC2 (ENSSSCG00000009072) #7	JADE1 (ENSSSCG00000009071) #8	SCLT1 (ENSSSCG00000029943) #9	C4orf33 (ENSSSCG00000061764) #10	PCDH10 (ENSSSCG00000036125) #11	PABPC4L (ENSSSCG00000009067) #12	PCDH18 (ENSSSCG00000032749) #15	SLC7A11 (ENSSSCG00000022649) #16	ENSSSCG00000048383	NOCT (ENSSSCG00000024596) #19	ELF2 (ENSSSCG00000029920) #20	ENSSSCG00000057026	MGARP (ENSSSCG00000009062)	NDUFC1 (ENSSSCG00000058604) #21	NAA15 (ENSSSCG00000009061) #22	RAB33B (ENSSSCG00000020711) #25	SETD7 (ENSSSCG00000030396) #27	MGST2 (ENSSSCG00000031736) #30	ENSSSCG00000046543	MAML3 (ENSSSCG00000009060) #31	SCOC (ENSSSCG00000038550) #32	CLGN (ENSSSCG00000026360) #33	MGAT4D (ENSSSCG00000038236) #34	ELMOD2 (ENSSSCG00000009055) #35	TBC1D9 (ENSSSCG00000032741) #37	RNF150 (ENSSSCG00000009053)	ZNF330 (ENSSSCG00000009052)	IL15 (ENSSSCG00000009051)	INPP4B (ENSSSCG00000009050)	USP38 (ENSSSCG00000009049)
Artiodactyla_a	ANCESTRAL SPECIES	12	ENSGT00530000063854	ENSGT00390000014635	ENSGT00940000154718	ENSGT00940000159744 #7	ENSGT00940000158247 #8	ENSGT00730000111168 #9	ENSGT00390000006284 #10	ENSGT00940000158277 #11	ENSGT00940000163344 #12	ENSGT00940000156295 #15	ENSGT00940000160324 #16	ENSGT00940000155249 #19	ENSGT00940000154953 #20	ENSGT00440000037338	ENSGT00390000002565 #21	ENSGT00950000183174.B.a #22	ENSGT00940000157090 #25	ENSGT00390000004827 #27	ENSGT00940000160288 #30	ENSGT00950000183201.b.b.a #31	ENSGT00390000008828 #32	ENSGT00950000182915.a.a.b #33	ENSGT00940000161998 #34	ENSGT00940000156589 #35	ENSGT00940000160382 #36	ENSGT00910000148499	ENSGT00940000157878 #37	ENSGT00940000156171	ENSGT00390000017043	ENSGT00390000016264	ENSGT00940000157587
Artiodactyla_b	ANCESTRAL SPECIES	16	ENSGT00530000063854	ENSGT00390000014635	ENSGT00940000154718	ENSGT00940000159744 #7	ENSGT00940000158247 #8	ENSGT00730000111168 #9	ENSGT00390000006284 #10	ENSGT00940000158277 #11	ENSGT00940000163344 #12	ENSGT00940000156295 #15	ENSGT00940000160324 #16	ENSGT00940000155249 #19	ENSGT00940000154953 #20	ENSGT00440000037338	ENSGT00390000002565 #21	ENSGT00950000183174.B.a #22	ENSGT00940000157090 #25	ENSGT00390000004827 #27	ENSGT00940000160288 #30	ENSGT00950000183201.b.b.a #31	ENSGT00390000008828 #32	ENSGT00950000182915.a.a.b #33	ENSGT00940000161998 #34	ENSGT00940000156589 #35	ENSGT00940000160382 #36	ENSGT00940000157878 #37	ENSGT00940000156171	ENSGT00390000017043	ENSGT00390000016264	ENSGT00940000157587	ENSGT00960000189829
Pecora	ANCESTRAL SPECIES	14	ENSGT00390000014635	ENSGT00940000154718	ENSGT00940000159744 #7	ENSGT00940000158247 #8	ENSGT00730000111168 #9	ENSGT00390000006284 #10	ENSGT00940000158277 #11	ENSGT01030000234904	ENSGT00940000163344 #12	ENSGT00940000156295 #15	ENSGT00940000160324 #16	ENSGT00940000155249 #19	ENSGT00940000154953 #20	ENSGT00440000037338	ENSGT00390000002565 #21	ENSGT00950000183174.B.a #22	ENSGT00940000157090 #25	ENSGT00390000004827 #27	ENSGT00940000160288 #30	ENSGT00950000183201.b.b.a #31	ENSGT00390000008828 #32	ENSGT00950000182915.a.a.b #33	ENSGT00940000161998 #34	ENSGT00940000156589 #35	ENSGT00940000160382 #36	ENSGT00940000157878 #37	ENSGT00940000156171	ENSGT00390000017043	ENSGT00390000016264	ENSGT00940000157587	ENSGT00960000189829
Yarkand deer	MODERN SPECIES	28	ENSCHYG00000003606	PABPC4L (ENSCHYG00000003623) #12	ENSCHYG00000003641	ENSCHYG00000003650	ENSCHYG00000003660	PCDH18 (ENSCHYG00000003685) #15	ENSCHYG00000003723	SLC7A11 (ENSCHYG00000003749) #16	ENSCHYG00000003775	ENSCHYG00000003782	NOCT (ENSCHYG00000003790) #19	ELF2 (ENSCHYG00000003820) #20	ENSCHYG00000003881	ENSCHYG00000003891	ENSCHYG00000003904 #21	NAA15 (ENSCHYG00000003925) #22	RAB33B (ENSCHYG00000003973) #25	SETD7 (ENSCHYG00000003984) #27	ENSCHYG00000004005	MGST2 (ENSCHYG00000000058) #30	MAML3 (ENSCHYG00000000075) #31	ENSCHYG00000000146 #32	CLGN (ENSCHYG00000000178) #33	MGAT4D (ENSCHYG00000000222) #34	ELMOD2 (ENSCHYG00000000281) #35	ENSCHYG00000000307	UCP1 (ENSCHYG00000000315) #36	TBC1D9 (ENSCHYG00000000347) #37	RNF150 (ENSCHYG00000000469)	ZNF330 (ENSCHYG00000000564)	IL15 (ENSCHYG00000000606)
Percora_a	ANCESTRAL SPECIES	17	ENSGT00940000159744 #7	ENSGT00390000018525.a.a.d	ENSGT00940000158247 #8	ENSGT00730000111168 #9	ENSGT00390000006284 #10	ENSGT00940000158277 #11	ENSGT01030000234904	ENSGT00940000163344 #12	ENSGT00940000156295 #15	ENSGT00940000160324 #16	ENSGT00940000173115	ENSGT00940000155249 #19	ENSGT00940000154953 #20	ENSGT00440000037338	ENSGT00390000002565 #21	ENSGT00950000183174.B.a #22	ENSGT00940000157090 #25	ENSGT00390000004827 #27	ENSGT00940000160288 #30	ENSGT00960000186868	ENSGT00950000183201.b.b.a #31	ENSGT00390000008828 #32	ENSGT00950000182915.a.a.b #33	ENSGT00940000161998 #34	ENSGT00940000156589 #35	ENSGT00940000160382 #36	ENSGT00940000157878 #37	ENSGT00940000156171	ENSGT00390000017043	ENSGT00390000016264	ENSGT00940000157587
Bovidae	ANCESTRAL SPECIES	17	ENSGT00940000159744 #7	ENSGT00390000018525.a.a.d	ENSGT00940000158247 #8	ENSGT00730000111168 #9	ENSGT00390000006284 #10	ENSGT00940000158277 #11	ENSGT01030000234904	ENSGT00940000163344 #12	ENSGT00940000156295 #15	ENSGT00940000160324 #16	ENSGT00940000173115	ENSGT00940000155249 #19	ENSGT00940000154953 #20	ENSGT00440000037338	ENSGT00390000002565 #21	ENSGT00950000183174.B.a #22	ENSGT00940000157090 #25	ENSGT00390000004827 #27	ENSGT00940000160288 #30	ENSGT00960000186868	ENSGT00950000183201.b.b.a #31	ENSGT00390000008828 #32	ENSGT00950000182915.a.a.b #33	ENSGT00940000161998 #34	ENSGT00940000156589 #35	ENSGT00940000160382 #36	ENSGT00940000157878 #37	ENSGT00940000156171	ENSGT00390000017043	ENSGT00390000016264	ENSGT00940000157587
Bovinae	ANCESTRAL SPECIES	13	ENSGT00940000159744 #7	ENSGT00940000158247 #8	ENSGT00730000111168 #9	ENSGT00390000006284 #10	ENSGT00940000158277 #11	ENSGT01030000234904	ENSGT00940000163344 #12	ENSGT00390000007640.b.d.b	ENSGT00940000156295 #15	ENSGT00940000160324 #16	ENSGT00940000155249 #19	ENSGT00940000154953 #20	ENSGT00440000037338	ENSGT00390000002565.u.a #21	ENSGT00390000002565.v #21	ENSGT00950000183174.B.a #22	ENSGT00940000157090 #25	ENSGT00390000004827 #27	ENSGT00940000160288 #30	ENSGT00960000186868	ENSGT00950000183201.b.b.a #31	ENSGT00390000008828.h #32	ENSGT00390000008828.g.a #32	ENSGT00950000182915.a.a.b #33	ENSGT00940000161998 #34	ENSGT00940000156589 #35	ENSGT00940000160382 #36	ENSGT00940000157878 #37	ENSGT00940000156171	ENSGT00390000017043.k	ENSGT00390000016264
Bos	ANCESTRAL SPECIES	14	ENSGT00940000159744 #7	ENSGT00940000158247 #8	ENSGT00730000111168 #9	ENSGT00390000006284.yb #10	ENSGT00940000158277 #11	ENSGT00940000163344 #12	ENSGT00390000007640.b.d.b	ENSGT00940000156295 #15	ENSGT00940000160324 #16	ENSGT00940000155249 #19	ENSGT00940000154953 #20	ENSGT00440000037338	ENSGT00390000002565.u.a #21	ENSGT01100000263480.a.a.b.b.b.a.b.a.b.a.a.b.b.a	ENSGT00390000002565.v #21	ENSGT00950000183174.B.a #22	ENSGT00940000157090 #25	ENSGT00390000004827 #27	ENSGT00940000160288 #30	ENSGT00960000186868	ENSGT00950000183201.b.b.a #31	ENSGT00390000008828.g.b #32	ENSGT00950000182915.a.a.b #33	ENSGT00940000161998 #34	ENSGT00940000156589 #35	ENSGT00940000160382 #36	ENSGT00940000157878 #37	ENSGT00940000156171	ENSGT00390000017043.k	ENSGT00390000016264	ENSGT00940000157587.e
Bos_b	ANCESTRAL SPECIES	13	ENSGT00940000159744 #7	ENSGT00940000158247 #8	ENSGT00730000111168 #9	ENSGT00390000006284.yb #10	ENSGT00940000158277 #11	ENSGT00940000163344 #12	ENSGT00390000007640.b.d.b	ENSGT00940000156295 #15	ENSGT00940000160324 #16	ENSGT00940000155249 #19	ENSGT00940000154953 #20	ENSGT00440000037338	ENSGT00390000002565.u.a #21	ENSGT01100000263480.a.a.b.b.b.a.b.a.b.a.a.b.b.a	ENSGT00390000002565.v #21	ENSGT00950000183174.B.a #22	ENSGT00940000157090 #25	ENSGT00390000004827 #27	ENSGT00940000160288 #30	ENSGT00960000186868	ENSGT00950000183201.b.b.a #31	ENSGT00390000008828.g.b #32	ENSGT00950000182915.a.a.b #33	ENSGT00940000161998 #34	ENSGT00940000156589 #35	ENSGT00940000160382 #36	ENSGT00940000157878 #37	ENSGT00940000156171	ENSGT00390000017043.k	ENSGT00390000016264	ENSGT00940000157587.e
Hybrid Bos Indicus	MODERN SPECIES	8	SCLT1 (ENSBIXG00005010351) #9	ENSBIXG00005010242 #10	PCDH10 (ENSBIXG00005010077) #11	ENSBIXG00005010047	ENSBIXG00005010038	PABPC4L (ENSBIXG00005010020) #12	ENSBIXG00005010001	ENSBIXG00005000726	PCDH18 (ENSBIXG00005009956) #15	SLC7A11 (ENSBIXG00005009909) #16	NOCT (ENSBIXG00005009863) #19	ELF2 (ENSBIXG00005009855) #20	ENSBIXG00005009817	ENSBIXG00005009802 #21	ENSBIXG00005009777	NAA15 (ENSBIXG00005009758) #22	RAB33B (ENSBIXG00005007415) #25	SETD7 (ENSBIXG00005009691) #27	MGST2 (ENSBIXG00005009641) #30	ENSBIXG00005009592	MAML3 (ENSBIXG00005009559) #31	ENSBIXG00005009545	ENSBIXG00005009516 #32	CLGN (ENSBIXG00005009427) #33	MGAT4D (ENSBIXG00005009367) #34	ELMOD2 (ENSBIXG00005009346) #35	UCP1 (ENSBIXG00005009326) #36	TBC1D9 (ENSBIXG00005009304) #37	RNF150 (ENSBIXG00005009250)	ENSBIXG00005000423	IL15 (ENSBIXG00005000406)
Cow	MODERN SPECIES	8	C17H4orf33 (ENSBTAG00000044159) #10	ENSBTAG00000049817	ENSBTAG00000053618	PCDH10 (ENSBTAG00000019977) #11	PABPC4L (ENSBTAG00000046902) #12	ENSBTAG00000033967	ENSBTAG00000023895	PCDH18 (ENSBTAG00000015549) #15	SLC7A11 (ENSBTAG00000034075) #16	ENSBTAG00000055067	NOCT (ENSBTAG00000005998) #19	ELF2 (ENSBTAG00000020594) #20	ENSBTAG00000015811	MGARP (ENSBTAG00000002599)	NDUFC1 (ENSBTAG00000039582) #21	NAA15 (ENSBTAG00000004745) #22	RAB33B (ENSBTAG00000003208) #25	SETD7 (ENSBTAG00000003581) #27	ENSBTAG00000049381	MGST2 (ENSBTAG00000021779) #30	MAML3 (ENSBTAG00000011373) #31	SCOC (ENSBTAG00000022109) #32	CLGN (ENSBTAG00000001580) #33	MGAT4D (ENSBTAG00000034281) #34	ELMOD2 (ENSBTAG00000014007) #35	UCP1 (ENSBTAG00000004647) #36	TBC1D9 (ENSBTAG00000018951) #37	RNF150 (ENSBTAG00000049010)	ZNF330 (ENSBTAG00000000297)	IL15 (ENSBTAG00000018200)	INPP4B (ENSBTAG00000014111)
Bos_a	ANCESTRAL SPECIES	14	ENSGT00940000159744 #7	ENSGT00940000158247 #8	ENSGT00730000111168 #9	ENSGT00390000006284.yb #10	ENSGT00940000163436	ENSGT00940000163344 #12	ENSGT00390000007640.b.d.b	ENSGT00940000156295 #15	ENSGT00940000160324 #16	ENSGT00940000155249 #19	ENSGT00940000154953 #20	ENSGT00440000037338	ENSGT00390000002565.u.a #21	ENSGT01100000263480.a.a.b.b.b.a.b.a.b.a.a.b.b.a	ENSGT00390000002565.v #21	ENSGT00950000183174.B.a #22	ENSGT00940000157090 #25	ENSGT00390000004827 #27	ENSGT00960000186868	ENSGT00940000160288 #30	ENSGT00950000183201.b.b.a #31	ENSGT00390000008828.g.a #32	ENSGT00950000182915.a.a.b #33	ENSGT00940000161998 #34	ENSGT00940000156589 #35	ENSGT00940000160382 #36	ENSGT00940000157878 #37	ENSGT00940000156171	ENSGT00390000017043.l.b	ENSGT00390000017043.k	ENSGT00390000016264
Wild yak	MODERN SPECIES	757									SLC7A11 (ENSBMUG00000011834) #16	ENSBMUG00000011813	ENSBMUG00000011802	NOCT (ENSBMUG00000011792) #19	ELF2 (ENSBMUG00000011706) #20	ENSBMUG00000011603	ENSBMUG00000011575 #21	NAA15 (ENSBMUG00000011551) #22	RAB33B (ENSBMUG00000011485) #25	SETD7 (ENSBMUG00000011467) #27	ENSBMUG00000011414	MGST2 (ENSBMUG00000011404) #30	MAML3 (ENSBMUG00000011393) #31	ENSBMUG00000011372 #32	CLGN (ENSBMUG00000011334) #33	MGAT4D (ENSBMUG00000011313) #34	ELMOD2 (ENSBMUG00000011241) #35	UCP1 (ENSBMUG00000011219) #36
Domestic yak	MODERN SPECIES	7	ENSBGRG00000004713	ENSBGRG00000004691	ENSBGRG00000004659	PCDH10 (ENSBGRG00000004606) #11	ENSBGRG00000004583	PABPC4L (ENSBGRG00000004569) #12	ENSBGRG00000004537	PCDH18 (ENSBGRG00000004464) #15	ENSBGRG00000004441	SLC7A11 (ENSBGRG00000004375) #16	NOCT (ENSBGRG00000004313) #19	ELF2 (ENSBGRG00000003822) #20	ENSBGRG00000003729	ENSBGRG00000003713 #21	ENSBGRG00000003696	NAA15 (ENSBGRG00000022725) #22	ENSBGRG00000022639 #25	SETD7 (ENSBGRG00000022543) #27	MGST2 (ENSBGRG00000022483) #30	ENSBGRG00000022464	MAML3 (ENSBGRG00000022425) #31	ENSBGRG00000022403	ENSBGRG00000022257 #32	CLGN (ENSBGRG00000022178) #33	MGAT4D (ENSBGRG00000022069) #34	ELMOD2 (ENSBGRG00000022015) #35	UCP1 (ENSBGRG00000021984) #36	TBC1D9 (ENSBGRG00000021876) #37	RNF150 (ENSBGRG00000021671)	ENSBGRG00000021644	ENSBGRG00000021593
American bison	MODERN SPECIES	3364		PCDH10 (ENSBBBG00000012048) #11	ENSBBBG00000012042	PABPC4L (ENSBBBG00000012038) #12	ENSBBBG00000012030	ENSBBBG00000012028	ENSBBBG00000012025	PCDH18 (ENSBBBG00000012018) #15	SLC7A11 (ENSBBBG00000002250) #16	ENSBBBG00000011991	ENSBBBG00000011986	NOCT (ENSBBBG00000011983) #19	ELF2 (ENSBBBG00000002239) #20	MGARP (ENSBBBG00000011955)	ENSBBBG00000011947 #21	NAA15 (ENSBBBG00000011936) #22	RAB33B (ENSBBBG00000011910) #25	ENSBBBG00000002220	MGST2 (ENSBBBG00000011906) #30	ENSBBBG00000011891	MAML3 (ENSBBBG00000011888) #31	ENSBBBG00000002212 #32	CLGN (ENSBBBG00000011857) #33	MGAT4D (ENSBBBG00000006983) #34	ELMOD2 (ENSBBBG00000011812) #35	UCP1 (ENSBBBG00000011805) #36	TBC1D9 (ENSBBBG00000011787) #37	RNF150 (ENSBBBG00000002181)	ENSBBBG00000002177	IL15 (ENSBBBG00000002172)
Caprinae	ANCESTRAL SPECIES	17	ENSGT00390000018525.a.a.d	ENSGT00940000158247 #8	ENSGT00730000111168 #9	ENSGT00390000006284 #10	ENSGT00950000182802.A.ab.b.b.a	ENSGT01030000234904	ENSGT00940000158277 #11	ENSGT00940000163344 #12	ENSGT00940000156295 #15	ENSGT00940000160324 #16	ENSGT00940000173115	ENSGT00940000155249 #19	ENSGT00940000154953 #20	ENSGT00440000037338	ENSGT00390000002565.t #21	ENSGT00950000183174.B.a #22	ENSGT00940000157090 #25	ENSGT00390000004827 #27	ENSGT00940000160288 #30	ENSGT00950000183201.b.b.a #31	ENSGT00390000008828 #32	ENSGT00950000182915.a.a.b #33	ENSGT00940000161998 #34	ENSGT00940000156589 #35	ENSGT00940000160382 #36	ENSGT00940000157878 #37	ENSGT00940000156171	ENSGT00390000017043	ENSGT00390000016264	ENSGT00940000157587	ENSGT00960000189829
Goat	MODERN SPECIES	8	ENSCHIG00000010387	C4orf33 (ENSCHIG00000024321) #10	ENSCHIG00000019226	ENSCHIG00000003914	PCDH10 (ENSCHIG00000014618) #11	ENSCHIG00000023086	PABPC4L (ENSCHIG00000007231) #12	ENSCHIG00000009956	ENSCHIG00000012321	PCDH18 (ENSCHIG00000010752) #15	SLC7A11 (ENSCHIG00000002069) #16	NOCT (ENSCHIG00000023612) #19	ELF2 (ENSCHIG00000018436) #20	MGARP (ENSCHIG00000019441)	ENSCHIG00000016164 #21	NAA15 (ENSCHIG00000022044) #22	RAB33B (ENSCHIG00000020393) #25	SETD7 (ENSCHIG00000009525) #27	MGST2 (ENSCHIG00000013345) #30	ENSCHIG00000010711 #31	ENSCHIG00000024566 #31	SCOC (ENSCHIG00000024222) #32	CLGN (ENSCHIG00000015205) #33	MGAT4D (ENSCHIG00000015716) #34	ELMOD2 (ENSCHIG00000010724) #35	UCP1 (ENSCHIG00000011037) #36	TBC1D9 (ENSCHIG00000012014) #37	RNF150 (ENSCHIG00000025485)	ZNF330 (ENSCHIG00000009128)	ENSCHIG00000017067	IL15 (ENSCHIG00000024482)
Rambouillet Sheep	MODERN SPECIES	8	ENSOARG00020016639	ENSOARG00020016616	ENSOARG00020016599	ENSOARG00020016535	PCDH10 (ENSOARG00020016452) #11	PABPC4L (ENSOARG00020016347) #12	ENSOARG00020016313	ENSOARG00020016275	PCDH18 (ENSOARG00020016062) #15	SLC7A11 (ENSOARG00020015377) #16	ENSOARG00020015305	NOCT (ENSOARG00020015245) #19	ELF2 (ENSOARG00020014570) #20	MGARP (ENSOARG00020014474)	ENSOARG00020014432 #21	NAA15 (ENSOARG00020014002) #22	RAB33B (ENSOARG00020013960) #25	SETD7 (ENSOARG00020013837) #27	MGST2 (ENSOARG00020013746) #30	MAML3 (ENSOARG00020013668) #31	SCOC (ENSOARG00020013497) #32	CLGN (ENSOARG00020013338) #33	MGAT4D (ENSOARG00020012924) #34	ENSOARG00020012870	ELMOD2 (ENSOARG00020012799) #35	UCP1 (ENSOARG00020012680) #36	TBC1D9 (ENSOARG00020012430) #37	RNF150 (ENSOARG00020012195)	ZNF330 (ENSOARG00020012126)	ENSOARG00020012074	IL15 (ENSOARG00020011892)
Siberian musk deer	MODERN SPECIES	198				PCDH10 (ENSMMSG00000001214) #11	PABPC4L (ENSMMSG00000001234) #12	ENSMMSG00000001248	ENSMMSG00000001260	ENSMMSG00000001278	PCDH18 (ENSMMSG00000001298) #15	SLC7A11 (ENSMMSG00000001334) #16	ENSMMSG00000001349	NOCT (ENSMMSG00000001359) #19	ELF2 (ENSMMSG00000001389) #20	MGARP (ENSMMSG00000001480)	ENSMMSG00000001503 #21	NAA15 (ENSMMSG00000001555) #22	RAB33B (ENSMMSG00000001721) #25	SETD7 (ENSMMSG00000001737) #27	MGST2 (ENSMMSG00000001761) #30	ENSMMSG00000001780	MAML3 (ENSMMSG00000001791) #31	SCOC (ENSMMSG00000001826) #32	CLGN (ENSMMSG00000001862) #33	MGAT4D (ENSMMSG00000001904) #34	ELMOD2 (ENSMMSG00000001964) #35	UCP1 (ENSMMSG00000001989) #36	TBC1D9 (ENSMMSG00000002010) #37	RNF150 (ENSMMSG00000002074)	ENSMMSG00000002114	ZNF330 (ENSMMSG00000002124)	IL15 (ENSMMSG00000002153)
Cetacea	ANCESTRAL SPECIES	12	ENSGT00940000158247 #8	ENSGT00730000111168 #9	ENSGT00390000006284 #10	ENSGT00940000154550.a.e.b	ENSGT00940000158277 #11	ENSGT00910000144227.s.b	ENSGT00940000163344 #12	ENSGT00950000182956.b.b.a.a.c.a.l.b	ENSGT00390000010089.e.b	ENSGT00940000156295 #15	ENSGT00940000160324 #16	ENSGT00940000155249 #19	ENSGT00940000154953 #20	ENSGT00440000037338	ENSGT00390000002565 #21	ENSGT00950000183174.B.a #22	ENSGT00940000157090 #25	ENSGT01030000234638.b.a.b.r	ENSGT00940000155541.C.db.a	ENSGT00390000006790.b	ENSGT00390000018549	ENSGT00940000157250.p	ENSGT00940000154521.A	ENSGT00940000157318	ENSGT00390000005589.a.a	ENSGT01030000234563.b.a.a	ENSGT00940000164031	ENSGT00950000183067.a.a	ENSGT00950000182850.a.b.a.a	ENSGT00530000063812.A	ENSGT00940000159570
Odontoceti	ANCESTRAL SPECIES	11	ENSGT00730000111168 #9	ENSGT00390000006284 #10	ENSGT00940000154550.a.e.b	ENSGT00990000213840	ENSGT00940000158277 #11	ENSGT00910000144227.s.b	ENSGT00940000163344.a #12	ENSGT00950000182956.b.b.a.a.c.a.l.b	ENSGT00390000010089.e.b	ENSGT00940000156295 #15	ENSGT00940000160324 #16	ENSGT00940000155249 #19	ENSGT00940000154953 #20	ENSGT00440000037338	ENSGT00390000002565.y.a #21	ENSGT00950000183174.B.a #22	ENSGT00940000157090 #25	ENSGT00940000155541.C.db.b.a	ENSGT00390000006790.b	ENSGT00390000018549	ENSGT00940000157250.p	ENSGT00940000154521.A	ENSGT00940000157318	ENSGT00390000005589.a.a	ENSGT01030000234563.b.a.a	ENSGT00950000183067.a.a	ENSGT00950000182850.a.b.a.a	ENSGT00530000063812.A	ENSGT00940000159570	ENSGT00940000159423	ENSGT00390000000645
Odontoceti_a	ANCESTRAL SPECIES	22	ENSGT00940000158247 #8	ENSGT00730000111168 #9	ENSGT00390000006284 #10	ENSGT00940000154550.a.e.b	ENSGT00990000213840	ENSGT00940000158277 #11	ENSGT00910000144227.s.b	ENSGT00940000163344.a #12	ENSGT00950000182956.b.b.a.a.c.a.l.b	ENSGT00940000156295 #15	ENSGT00940000160324 #16	ENSGT00940000155249 #19	ENSGT00940000154953 #20	ENSGT00440000037338	ENSGT00390000002565.y.a #21	ENSGT00950000183174.B.a #22	ENSGT00940000157090 #25	ENSGT00940000155541.C.db.b.a	ENSGT00390000006790.b	ENSGT00390000018549	ENSGT00940000157250.p	ENSGT00940000154521.A	ENSGT00940000157318	ENSGT00390000005589.a.a	ENSGT01030000234563.b.a.a	ENSGT00950000183067.a.a	ENSGT00950000182850.a.b.a.a	ENSGT00530000063812.A	ENSGT00940000159570	ENSGT00940000159423	ENSGT00390000000645
Odontoceti_b	ANCESTRAL SPECIES	11	ENSGT00390000006284 #10	ENSGT00940000154550.a.e.b	ENSGT00990000213840	ENSGT00940000158277 #11	ENSGT00910000144227.s.b	ENSGT00940000163344.a #12	ENSGT00950000182956.b.b.a.a.c.a.l.b	ENSGT00390000004417.a.c.a	ENSGT01000000216059	ENSGT00940000156295 #15	ENSGT00940000160324 #16	ENSGT00940000155249 #19	ENSGT00940000154953 #20	ENSGT00440000037338	ENSGT00390000002565.y.a #21	ENSGT00950000183174.B.a #22	ENSGT00950000182802.B.a.a.a.b.a.b	ENSGT00940000157090 #25	ENSGT00940000155541.C.db.b.a	ENSGT00390000006790.b	ENSGT00390000018549	ENSGT00940000157250.p	ENSGT00940000154521.A	ENSGT00940000157318	ENSGT00390000005589.a.a	ENSGT01030000234563.b.a.a	ENSGT00950000183067.a.a	ENSGT00950000182850.a.b.a.a	ENSGT00530000063812.A	ENSGT00940000159570	ENSGT00940000159423
Monodontidae	ANCESTRAL SPECIES	9	ENSGT00730000111168 #9	ENSGT00390000006284 #10	ENSGT00940000154550.a.e.b	ENSGT00990000213840	ENSGT00940000158277 #11	ENSGT00910000144227.s.b	ENSGT00940000163344.a #12	ENSGT00390000004417.a.c.a	ENSGT01000000216059	ENSGT00940000156295 #15	ENSGT00940000160324 #16	ENSGT00940000155249 #19	ENSGT00940000154953 #20	ENSGT00440000037338	ENSGT00390000002565.y.a #21	ENSGT00950000183174.B.a #22	ENSGT00950000182802.B.a.a.a.b.a.b	ENSGT00940000157090 #25	ENSGT00940000155541.C.db.b.a	ENSGT00390000006790.b	ENSGT00390000018549	ENSGT00940000157250.p	ENSGT00940000154521.A	ENSGT00940000157318	ENSGT00390000005589.a.a	ENSGT01030000234563.b.a.a	ENSGT00950000183067.a.a	ENSGT00950000182850.a.b.a.a	ENSGT00530000063812.A	ENSGT00940000159570	ENSGT00940000159423
Beluga whale	MODERN SPECIES	77	ENSDLEG00000018922	ENSDLEG00000018927	PCDH10 (ENSDLEG00000018930) #11	ENSDLEG00000018933	PABPC4L (ENSDLEG00000018935) #12	ENSDLEG00000018941	ENSDLEG00000018951	PCDH18 (ENSDLEG00000018963) #15	SLC7A11 (ENSDLEG00000018967) #16	ENSDLEG00000018982	ENSDLEG00000018987	NOCT (ENSDLEG00000018993) #19	ELF2 (ENSDLEG00000019002) #20	MGARP (ENSDLEG00000019030)	ENSDLEG00000019031 #21	NAA15 (ENSDLEG00000019037) #22	ENSDLEG00000019063	RAB33B (ENSDLEG00000019066) #25	ENSDLEG00000019068	BLOC1S4 (ENSDLEG00000019071)	KIAA0232 (ENSDLEG00000019074)	TBC1D14 (ENSDLEG00000019083)	CCDC96 (ENSDLEG00000019112)	TADA2B (ENSDLEG00000019117)	GRPEL1 (ENSDLEG00000019119)	SORCS2 (ENSDLEG00000019131)	AFAP1 (ENSDLEG00000019189)	ABLIM2 (ENSDLEG00000019228)	SH3TC1 (ENSDLEG00000019312)	HTRA3 (ENSDLEG00000019321)	ACOX3 (ENSDLEG00000019342)
Narwhal	MODERN SPECIES	307	C4orf33 (ENSMMNG00015013484) #10	ENSMMNG00015013495	ENSMMNG00015013504	PCDH10 (ENSMMNG00015013518) #11	ENSMMNG00015013527	PABPC4L (ENSMMNG00015013534) #12	ENSMMNG00015013563	ENSMMNG00015013575	PCDH18 (ENSMMNG00015013593) #15	SLC7A11 (ENSMMNG00015013620) #16	NOCT (ENSMMNG00015013640) #19	ELF2 (ENSMMNG00015013677) #20	ENSMMNG00015005969	MGARP (ENSMMNG00015005988)	ENSMMNG00015006008 #21	NAA15 (ENSMMNG00015006046) #22	RAB33B (ENSMMNG00015006101) #25	ENSMMNG00015006115	BLOC1S4 (ENSMMNG00015006131)	KIAA0232 (ENSMMNG00015006220)	TBC1D14 (ENSMMNG00015006306)	CCDC96 (ENSMMNG00015006381)	TADA2B (ENSMMNG00015006399)	GRPEL1 (ENSMMNG00015006417)	SORCS2 (ENSMMNG00015006468)	AFAP1 (ENSMMNG00015006549)	ABLIM2 (ENSMMNG00015006708)	SH3TC1 (ENSMMNG00015006864)	HTRA3 (ENSMMNG00015006949)	ACOX3 (ENSMMNG00015006993)	TRMT44 (ENSMMNG00015007067)
Vaquita	MODERN SPECIES	16	ENSPSNG00000002863	PABPC4L (ENSPSNG00000002851) #12	ENSPSNG00000002838	ENSPSNG00000002823	ENSPSNG00000002803	PCDH18 (ENSPSNG00000002759) #15	ENSPSNG00000002737	ENSPSNG00000002718	ENSPSNG00000002711	ENSPSNG00000002696	SLC7A11 (ENSPSNG00000002665) #16	NOCT (ENSPSNG00000002626) #19	ELF2 (ENSPSNG00000002585) #20	MGARP (ENSPSNG00000002547)	ENSPSNG00000002536 #21	NAA15 (ENSPSNG00000002515) #22	ENSPSNG00000002493	RAB33B (ENSPSNG00000002479) #25	ENSPSNG00000002467	BLOC1S4 (ENSPSNG00000002460)	KIAA0232 (ENSPSNG00000002420)	TBC1D14 (ENSPSNG00000002281)	CCDC96 (ENSPSNG00000002230)	TADA2B (ENSPSNG00000002208)	GRPEL1 (ENSPSNG00000002191)	SORCS2 (ENSPSNG00000002142)	AFAP1 (ENSPSNG00000002106)	ABLIM2 (ENSPSNG00000001662)	SH3TC1 (ENSPSNG00000001295)	HTRA3 (ENSPSNG00000001248)	ACOX3 (ENSPSNG00000001193)
Dolphin	MODERN SPECIES	4847														MGARP (ENSTTRG00000001108)	NDUFC1 (ENSTTRG00000001107) #21	NAA15 (ENSTTRG00000001106) #22	RAB33B (ENSTTRG00000001105) #25
Sperm whale	MODERN SPECIES	18	C7H4orf33 (ENSPCTG00005013061) #10	ENSPCTG00005013103	ENSPCTG00005013136	PCDH10 (ENSPCTG00005013158) #11	ENSPCTG00005013265	PABPC4L (ENSPCTG00005013312) #12	ENSPCTG00005013338	ENSPCTG00005013356	ENSPCTG00005013474	PCDH18 (ENSPCTG00005013496) #15	SLC7A11 (ENSPCTG00005013785) #16	NOCT (ENSPCTG00005013855) #19	ELF2 (ENSPCTG00005013935) #20	MGARP (ENSPCTG00005014383)	NDUFC1 (ENSPCTG00005014424) #21	NAA15 (ENSPCTG00005014457) #22	ENSPCTG00005014565	RAB33B (ENSPCTG00005014600) #25	ENSPCTG00005014639	ENSPCTG00005014714	KIAA0232 (ENSPCTG00005014740)	TBC1D14 (ENSPCTG00005014818)	CCDC96 (ENSPCTG00005014994)	TADA2B (ENSPCTG00005015010)	GRPEL1 (ENSPCTG00005015078)	SORCS2 (ENSPCTG00005015247)	AFAP1 (ENSPCTG00005015990)	ENSPCTG00005016281	ENSPCTG00005016460	ACOX3 (ENSPCTG00005016523)	TRMT44 (ENSPCTG00005016606)
Blue whale	MODERN SPECIES	16	ENSBMSG00010006585	ENSBMSG00010006594	PCDH10 (ENSBMSG00010006607) #11	ENSBMSG00010006641	PABPC4L (ENSBMSG00010006652) #12	ENSBMSG00010006665	ENSBMSG00010006680	ENSBMSG00010006697	PCDH18 (ENSBMSG00010006713) #15	ENSBMSG00010006747	SLC7A11 (ENSBMSG00010006770) #16	NOCT (ENSBMSG00010006822) #19	ELF2 (ENSBMSG00010006847) #20	MGARP (ENSBMSG00010006913)	ENSBMSG00010006938 #21	NAA15 (ENSBMSG00010006960) #22	RAB33B (ENSBMSG00010006989) #25	ENSBMSG00010007008	ENSBMSG00010007023	BLOC1S4 (ENSBMSG00010007051)	KIAA0232 (ENSBMSG00010007070)	TBC1D14 (ENSBMSG00010007109)	ENSBMSG00010007181	TADA2B (ENSBMSG00010007190)	ENSBMSG00010007211	ENSBMSG00010007222	SORCS2 (ENSBMSG00010007238)	ENSBMSG00010007301	AFAP1 (ENSBMSG00010007315)	ABLIM2 (ENSBMSG00010007465)	SH3TC1 (ENSBMSG00010008538)
Camelidae	ANCESTRAL SPECIES	20	ENSGT00530000063854	ENSGT00390000014635	ENSGT00940000154718	ENSGT00940000159744 #7	ENSGT00940000158247 #8	ENSGT00730000111168 #9	ENSGT00390000006284 #10	ENSGT00940000158277 #11	ENSGT00940000163344 #12	ENSGT00940000156295 #15	ENSGT00940000160324 #16	ENSGT00940000155249 #19	ENSGT00940000154953 #20	ENSGT00440000037338	ENSGT00390000002565 #21	ENSGT00950000183174.B.a #22	ENSGT00940000157090 #25	ENSGT00390000004827 #27	ENSGT00940000160288 #30	ENSGT00950000183201.b.b.a #31	ENSGT00390000008828 #32	ENSGT00950000182915.a.a.b #33	ENSGT00940000161998 #34	ENSGT00940000156589 #35	ENSGT00940000160382 #36	ENSGT00910000148499	ENSGT00940000157878 #37	ENSGT00940000156171	ENSGT00390000017043	ENSGT00390000016264	ENSGT00940000157587
Arabian camel	MODERN SPECIES	11	ABHD18 (ENSCDRG00005002119)	LARP1B (ENSCDRG00005002062)	PGRMC2 (ENSCDRG00005002044) #7	JADE1 (ENSCDRG00005002006) #8	SCLT1 (ENSCDRG00005001764) #9	ENSCDRG00005001708 #10	PCDH10 (ENSCDRG00005001687) #11	PABPC4L (ENSCDRG00005001675) #12	PCDH18 (ENSCDRG00005001630) #15	ENSCDRG00005001616	SLC7A11 (ENSCDRG00005001594) #16	NOCT (ENSCDRG00005001577) #19	ELF2 (ENSCDRG00005001499) #20	MGARP (ENSCDRG00005001454)	NDUFC1 (ENSCDRG00005001444) #21	NAA15 (ENSCDRG00005001394) #22	RAB33B (ENSCDRG00005001374) #25	SETD7 (ENSCDRG00005001339) #27	MGST2 (ENSCDRG00005001316) #30	MAML3 (ENSCDRG00005001298) #31	SCOC (ENSCDRG00005001274) #32	CLGN (ENSCDRG00005001251) #33	MGAT4D (ENSCDRG00005001126) #34	ELMOD2 (ENSCDRG00005001082) #35	UCP1 (ENSCDRG00005001056) #36	ENSCDRG00005001035	TBC1D9 (ENSCDRG00005000929) #37	RNF150 (ENSCDRG00005000887)	ZNF330 (ENSCDRG00005000859)	IL15 (ENSCDRG00005000841)	INPP4B (ENSCDRG00005000441)
Alpaca	MODERN SPECIES	649														MGARP (ENSVPAG00000007702)	NDUFC1 (ENSVPAG00000007703) #21	NAA15 (ENSVPAG00000007704) #22	RAB33B (ENSVPAG00000007706) #25	SETD7 (ENSVPAG00000007707) #27
Laurasiatheria_b	ANCESTRAL SPECIES	8	ENSGT00390000014635	ENSGT00940000154718	ENSGT00940000159744 #7	ENSGT00940000158247 #8	ENSGT00730000111168 #9	ENSGT00390000006284 #10	ENSGT00940000158277 #11	ENSGT00940000163344 #12	ENSGT00940000156295 #15	ENSGT00940000160324 #16	ENSGT00940000155249 #19	ENSGT00940000154953 #20	ENSGT00990000203987	ENSGT00440000037338	ENSGT00390000002565 #21	ENSGT00950000183174.B.a #22	ENSGT00940000157090 #25	ENSGT00390000004827 #27	ENSGT00940000160288 #30	ENSGT00950000183201.b.b.a #31	ENSGT00390000008828 #32	ENSGT00950000182915.a.a.b #33	ENSGT00940000161998 #34	ENSGT00940000156589 #35	ENSGT00940000160382 #36	ENSGT00940000157878 #37	ENSGT00940000156171	ENSGT00390000017043	ENSGT00390000016264	ENSGT00940000157587	ENSGT00950000186280
Laurasiatheria_c	ANCESTRAL SPECIES	8	ENSGT00390000014635	ENSGT00940000154718	ENSGT00940000159744 #7	ENSGT00940000158247 #8	ENSGT00730000111168 #9	ENSGT00390000006284 #10	ENSGT00940000158277 #11	ENSGT00940000163344 #12	ENSGT00940000156295 #15	ENSGT00940000160324 #16	ENSGT00940000155249 #19	ENSGT00940000154953 #20	ENSGT00990000203987	ENSGT00440000037338	ENSGT00390000002565 #21	ENSGT00950000183174.B.a #22	ENSGT00940000157090 #25	ENSGT00390000004827 #27	ENSGT00940000160288 #30	ENSGT00950000183201.b.b.a #31	ENSGT00390000008828 #32	ENSGT00950000182915.a.a.b #33	ENSGT00940000161998 #34	ENSGT00940000156589 #35	ENSGT00940000160382 #36	ENSGT00940000157878 #37	ENSGT00940000156171	ENSGT00390000017043	ENSGT00390000016264	ENSGT00940000157587	ENSGT00950000186280
Chiroptera	ANCESTRAL SPECIES	36	ENSGT00530000063854	ENSGT00390000014635	ENSGT00940000154718	ENSGT00940000159744 #7	ENSGT00940000158247 #8	ENSGT00730000111168 #9	ENSGT00390000006284 #10	ENSGT00940000158277 #11	ENSGT00940000163344 #12	ENSGT00940000156295 #15	ENSGT00940000160324 #16	ENSGT00940000155249 #19	ENSGT00940000154953 #20	ENSGT00440000037338	ENSGT00390000002565 #21	ENSGT00950000183174.B.a #22	ENSGT00940000157090 #25	ENSGT00390000004827 #27	ENSGT00940000160288 #30	ENSGT00950000183201.b.b.a #31	ENSGT00390000008828 #32	ENSGT00950000182915.a.a.b #33	ENSGT00940000161998 #34	ENSGT00940000156589 #35	ENSGT00940000160382 #36	ENSGT00940000157878 #37	ENSGT00940000156171	ENSGT00390000017043	ENSGT00390000016264	ENSGT00940000157587	ENSGT00940000158403
Microchiroptera	ANCESTRAL SPECIES	38	ENSGT00530000063854	ENSGT00390000014635	ENSGT00940000154718	ENSGT00940000159744 #7	ENSGT00940000158247 #8	ENSGT00730000111168 #9	ENSGT00390000006284 #10	ENSGT00940000158277 #11	ENSGT00940000163344 #12	ENSGT00940000156295 #15	ENSGT00940000160324 #16	ENSGT00940000155249 #19	ENSGT00940000154953 #20	ENSGT00440000037338	ENSGT00390000002565 #21	ENSGT00950000183174.B.a #22	ENSGT00940000157090 #25	ENSGT00390000004827 #27	ENSGT00940000160288 #30	ENSGT00950000183201.b.b.a #31	ENSGT00390000008828 #32	ENSGT00950000182915.a.a.b #33	ENSGT00940000161998 #34	ENSGT00940000156589 #35	ENSGT00940000160382 #36	ENSGT00940000157878 #37	ENSGT00940000156171	ENSGT00390000017043	ENSGT00390000016264	ENSGT00940000157587	ENSGT00940000158403
Microbat	MODERN SPECIES	938	LARP1B (ENSMLUG00000010229)	PGRMC2 (ENSMLUG00000010259) #7	JADE1 (ENSMLUG00000008320) #8	SCLT1 (ENSMLUG00000008359) #9	ENSMLUG00000012525	PCDH10 (ENSMLUG00000012385) #11	PABPC4L (ENSMLUG00000008254) #12	PCDH18 (ENSMLUG00000015992) #15	ENSMLUG00000027616	SLC7A11 (ENSMLUG00000008864) #16	ENSMLUG00000022677	NOCT (ENSMLUG00000009023) #19	ELF2 (ENSMLUG00000009034) #20	MGARP (ENSMLUG00000009067)	NDUFC1 (ENSMLUG00000009082) #21	NAA15 (ENSMLUG00000009086) #22	RAB33B (ENSMLUG00000006803) #25	SETD7 (ENSMLUG00000008810) #27	MGST2 (ENSMLUG00000008833) #30	MAML3 (ENSMLUG00000008845) #31	SCOC (ENSMLUG00000014087) #32	CLGN (ENSMLUG00000014092) #33	MGAT4D (ENSMLUG00000009542) #34	ELMOD2 (ENSMLUG00000009559) #35	UCP1 (ENSMLUG00000009574) #36	TBC1D9 (ENSMLUG00000009598) #37	ENSMLUG00000029642	RNF150 (ENSMLUG00000009658)	ZNF330 (ENSMLUG00000009684)	IL15 (ENSMLUG00000007618)	ENSMLUG00000017627
Greater horseshoe bat	MODERN SPECIES	9	LARP1B (ENSRFEG00010010593)	ENSRFEG00010010762	PGRMC2 (ENSRFEG00010010851) #7	JADE1 (ENSRFEG00010011050) #8	SCLT1 (ENSRFEG00010011176) #9	C4orf33 (ENSRFEG00010011306) #10	PCDH10 (ENSRFEG00010011383) #11	PABPC4L (ENSRFEG00010011483) #12	ENSRFEG00010011499	PCDH18 (ENSRFEG00010011541) #15	SLC7A11 (ENSRFEG00010011764) #16	NOCT (ENSRFEG00010011804) #19	ELF2 (ENSRFEG00010011844) #20	MGARP (ENSRFEG00010012025)	ENSRFEG00010012050 #21	NAA15 (ENSRFEG00010012093) #22	RAB33B (ENSRFEG00010012186) #25	SETD7 (ENSRFEG00010012204) #27	MGST2 (ENSRFEG00010012252) #30	MAML3 (ENSRFEG00010012335) #31	SCOC (ENSRFEG00010012423) #32	ENSRFEG00010012509	MGAT4D (ENSRFEG00010012579) #34	ELMOD2 (ENSRFEG00010012962) #35	UCP1 (ENSRFEG00010013035) #36	TBC1D9 (ENSRFEG00010013080) #37	RNF150 (ENSRFEG00010013446)	ZNF330 (ENSRFEG00010013528)	IL15 (ENSRFEG00010013629)	INPP4B (ENSRFEG00010013805)	USP38 (ENSRFEG00010013936)
Megabat	MODERN SPECIES	787														MGARP (ENSPVAG00000009581)	NDUFC1 (ENSPVAG00000009582) #21	NAA15 (ENSPVAG00000009583) #22	RAB33B (ENSPVAG00000009586) #25
Equus	ANCESTRAL SPECIES	24	ENSGT00940000159744 #7	ENSGT00940000158247 #8	ENSGT00730000111168 #9	ENSGT00390000006284 #10	ENSGT00940000158277 #11	ENSGT00940000163344 #12	ENSGT01090000263420	ENSGT00940000156295 #15	ENSGT00940000160324 #16	ENSGT00940000155249 #19	ENSGT00940000154953 #20	ENSGT01090000263219.E	ENSGT00990000203987	ENSGT00440000037338	ENSGT00390000002565 #21	ENSGT00950000183174.B.a #22	ENSGT00940000157090 #25	ENSGT00390000004827 #27	ENSGT00940000160288.d #30	ENSGT00950000183201.b.b.a #31	ENSGT00390000008828 #32	ENSGT00950000182915.a.a.b #33	ENSGT00940000161998 #34	ENSGT00940000156589 #35	ENSGT00940000160382 #36	ENSGT00940000157878 #37	ENSGT00940000156171	ENSGT00390000017043	ENSGT00390000016264	ENSGT00940000157587	ENSGT00950000186280
Horse	MODERN SPECIES	11	JADE1 (ENSECAG00000024419) #8	SCLT1 (ENSECAG00000024050) #9	C2H4orf33 (ENSECAG00000023838) #10	PCDH10 (ENSECAG00000023184) #11	ENSECAG00000023024	PABPC4L (ENSECAG00000031416) #12	ENSECAG00000044629	PCDH18 (ENSECAG00000022715) #15	SLC7A11 (ENSECAG00000022696) #16	NOCT (ENSECAG00000022676) #19	ELF2 (ENSECAG00000022077) #20	ENSECAG00000045220	ENSECAG00000049285	MGARP (ENSECAG00000022062)	NDUFC1 (ENSECAG00000021948) #21	NAA15 (ENSECAG00000019842) #22	RAB33B (ENSECAG00000019611) #25	SETD7 (ENSECAG00000019219) #27	MGST2 (ENSECAG00000019195) #30	MAML3 (ENSECAG00000019137) #31	ENSECAG00000030092 #32	ENSECAG00000047277 #33	CLGN (ENSECAG00000017686) #33	MGAT4D (ENSECAG00000017651) #34	ELMOD2 (ENSECAG00000017466) #35	UCP1 (ENSECAG00000026962) #36	TBC1D9 (ENSECAG00000015440) #37	ENSECAG00000049272	RNF150 (ENSECAG00000015385)	ZNF330 (ENSECAG00000014441)	IL15 (ENSECAG00000014406)
Donkey	MODERN SPECIES	22	PGRMC2 (ENSEASG00005018083) #7	JADE1 (ENSEASG00005018071) #8	SCLT1 (ENSEASG00005018058) #9	C4orf33 (ENSEASG00005018051) #10	ENSEASG00005033542	PCDH10 (ENSEASG00005007887) #11	ENSEASG00005027026	PABPC4L (ENSEASG00005007883) #12	ENSEASG00005007882	PCDH18 (ENSEASG00005007879) #15	SLC7A11 (ENSEASG00005007875) #16	NOCT (ENSEASG00005035151) #19	ENSEASG00005037750	ELF2 (ENSEASG00005007869) #20	MGARP (ENSEASG00005025467)	NAA15 (ENSEASG00005007865) #22	ENSEASG00005007866 #21	RAB33B (ENSEASG00005036241) #25	SETD7 (ENSEASG00005007862) #27	ENSEASG00005007860 #30	MAML3 (ENSEASG00005007858) #31	ENSEASG00005033815 #32	CLGN (ENSEASG00005007852) #33	MGAT4D (ENSEASG00005007849) #34	ELMOD2 (ENSEASG00005007845) #35	UCP1 (ENSEASG00005007842) #36	TBC1D9 (ENSEASG00005007836) #37	RNF150 (ENSEASG00005007830)	ZNF330 (ENSEASG00005007822)	IL15 (ENSEASG00005036963)	ENSEASG00005007814
Carnivora	ANCESTRAL SPECIES	5	ENSGT00390000014635	ENSGT00940000154718	ENSGT00940000159744 #7	ENSGT00940000158247 #8	ENSGT00730000111168 #9	ENSGT00390000006284 #10	ENSGT00940000158277 #11	ENSGT00940000163344 #12	ENSGT00940000156295 #15	ENSGT00940000160324 #16	ENSGT00940000155249 #19	ENSGT00940000154953 #20	ENSGT00990000203987	ENSGT00440000037338	ENSGT00390000002565 #21	ENSGT00950000183174.B.a #22	ENSGT00940000157090 #25	ENSGT00390000004827 #27	ENSGT00940000160288 #30	ENSGT00950000183201.b.b.a #31	ENSGT00390000008828 #32	ENSGT00950000182915.a.a.b #33	ENSGT00940000161998 #34	ENSGT00940000156589 #35	ENSGT00940000160382 #36	ENSGT00940000157878 #37	ENSGT00940000156171	ENSGT00390000017043	ENSGT00390000016264	ENSGT00940000157587	ENSGT00940000158403
Felidae	ANCESTRAL SPECIES	4	ENSGT00390000014635	ENSGT00940000154718	ENSGT00940000159744 #7	ENSGT00940000158247 #8	ENSGT00730000111168 #9	ENSGT00390000006284 #10	ENSGT00940000158277 #11	ENSGT00940000163344 #12	ENSGT00940000156295 #15	ENSGT00390000013102.e.a.e	ENSGT00940000160324 #16	ENSGT00940000155249 #19	ENSGT00940000154953 #20	ENSGT00440000037338	ENSGT00390000002565 #21	ENSGT00950000183174.B.a #22	ENSGT00940000157090 #25	ENSGT00390000004827 #27	ENSGT00940000160288 #30	ENSGT00950000183201.b.b.a #31	ENSGT00390000008828 #32	ENSGT00950000182915.a.a.b #33	ENSGT00940000161998 #34	ENSGT00940000156589 #35	ENSGT00940000160382 #36	ENSGT00940000157878 #37	ENSGT00940000156171	ENSGT00390000017043	ENSGT00390000016264	ENSGT00940000157587	ENSGT00940000158403
Panthera	ANCESTRAL SPECIES	5	ENSGT00940000154718	ENSGT00940000159744 #7	ENSGT00940000158247 #8	ENSGT00730000111168 #9	ENSGT00390000006284 #10	ENSGT00940000158277 #11	ENSGT00940000163344 #12	ENSGT00940000168673	ENSGT00940000156295 #15	ENSGT00390000013102.e.a.e	ENSGT00940000160324 #16	ENSGT00940000155249 #19	ENSGT00940000154953 #20	ENSGT00440000037338	ENSGT00390000002565 #21	ENSGT00950000183174.B.a #22	ENSGT00940000157090 #25	ENSGT00390000004827 #27	ENSGT00940000160288 #30	ENSGT00950000183201.b.b.a #31	ENSGT00390000008828 #32	ENSGT00950000182915.a.a.b #33	ENSGT00940000161998 #34	ENSGT00940000156589 #35	ENSGT00940000160382 #36	ENSGT00940000157878 #37	ENSGT00940000156171	ENSGT00390000017043	ENSGT00390000016264	ENSGT00940000157587	ENSGT00940000158403
Tiger	MODERN SPECIES	367	ENSPTIG00000011166	ENSPTIG00000010942 #7	JADE1 (ENSPTIG00000010404) #8	SCLT1 (ENSPTIG00000010184) #9	C4orf33 (ENSPTIG00000009912) #10	PCDH10 (ENSPTIG00000009855) #11	PABPC4L (ENSPTIG00000010106) #12	ENSPTIG00000009656	PCDH18 (ENSPTIG00000009440) #15	SLC7A11 (ENSPTIG00000009116) #16	ENSPTIG00000008903	NOCT (ENSPTIG00000008672) #19	ELF2 (ENSPTIG00000008256) #20	MGARP (ENSPTIG00000008143)	ENSPTIG00000008073 #21	NAA15 (ENSPTIG00000007667) #22	RAB33B (ENSPTIG00000007518) #25	SETD7 (ENSPTIG00000007276) #27	MGST2 (ENSPTIG00000007125) #30	ENSPTIG00000010071 #31	SCOC (ENSPTIG00000006565) #32	CLGN (ENSPTIG00000006432) #33	MGAT4D (ENSPTIG00000005940) #34	ELMOD2 (ENSPTIG00000005825) #35	UCP1 (ENSPTIG00000005728) #36	TBC1D9 (ENSPTIG00000005564) #37	RNF150 (ENSPTIG00000005145)	ZNF330 (ENSPTIG00000004314)	IL15 (ENSPTIG00000001825)	INPP4B (ENSPTIG00000000345)	USP38 (ENSPTIG00000021206)
Panthera_a	ANCESTRAL SPECIES	2	ENSGT00940000154718	ENSGT00940000159744 #7	ENSGT00940000158247 #8	ENSGT00730000111168 #9	ENSGT00390000006284 #10	ENSGT00940000158277 #11	ENSGT00940000163344 #12	ENSGT00940000168673	ENSGT00940000156295 #15	ENSGT00390000013102.e.a.e	ENSGT00940000160324 #16	ENSGT00940000155249 #19	ENSGT00940000154953 #20	ENSGT00440000037338	ENSGT00390000002565 #21	ENSGT00950000183174.B.a #22	ENSGT00940000157090 #25	ENSGT00390000004827 #27	ENSGT00940000160288 #30	ENSGT00950000183201.b.b.a #31	ENSGT00390000008828 #32	ENSGT00950000182915.a.a.b #33	ENSGT00940000161998 #34	ENSGT00940000156589 #35	ENSGT00940000160382 #36	ENSGT00940000157878 #37	ENSGT00940000156171	ENSGT00390000017043	ENSGT00390000016264	ENSGT00940000157587	ENSGT00940000158403
leopard	MODERN SPECIES	3	SCLT1 (ENSPPRG00000017276) #9	C4orf33 (ENSPPRG00000013360) #10	ENSPPRG00000013090	PCDH10 (ENSPPRG00000012837) #11	PABPC4L (ENSPPRG00000018628) #12	ENSPPRG00000011242	ENSPPRG00000010956	PCDH18 (ENSPPRG00000010334) #15	ENSPPRG00000003375	SLC7A11 (ENSPPRG00000009725) #16	ENSPPRG00000018533	NOCT (ENSPPRG00000009488) #19	ELF2 (ENSPPRG00000009288) #20	MGARP (ENSPPRG00000007495)	ENSPPRG00000006889 #21	NAA15 (ENSPPRG00000006354) #22	RAB33B (ENSPPRG00000006119) #25	SETD7 (ENSPPRG00000005792) #27	MGST2 (ENSPPRG00000004911) #30	MAML3 (ENSPPRG00000003719) #31	ENSPPRG00000002856 #32	CLGN (ENSPPRG00000001604) #33	MGAT4D (ENSPPRG00000001104) #34	ELMOD2 (ENSPPRG00000000147) #35	UCP1 (ENSPPRG00000022839) #36	TBC1D9 (ENSPPRG00000022937) #37	RNF150 (ENSPPRG00000023447)	ZNF330 (ENSPPRG00000015737)	IL15 (ENSPPRG00000012086)	INPP4B (ENSPPRG00000009054)	USP38 (ENSPPRG00000006892)
lion	MODERN SPECIES	4	JADE1 (ENSPLOG00000009060) #8	SCLT1 (ENSPLOG00000008836) #9	C4orf33 (ENSPLOG00000008757) #10	PCDH10 (ENSPLOG00000008646) #11	PABPC4L (ENSPLOG00000008625) #12	ENSPLOG00000008600	ENSPLOG00000008574	PCDH18 (ENSPLOG00000008459) #15	ENSPLOG00000008422	SLC7A11 (ENSPLOG00000008394) #16	ENSPLOG00000008359	NOCT (ENSPLOG00000008343) #19	ELF2 (ENSPLOG00000008106) #20	MGARP (ENSPLOG00000007972)	NDUFC1 (ENSPLOG00000007946) #21	NAA15 (ENSPLOG00000007913) #22	ENSPLOG00000007887 #25	SETD7 (ENSPLOG00000007858) #27	MGST2 (ENSPLOG00000007800) #30	MAML3 (ENSPLOG00000007702) #31	ENSPLOG00000007535 #32	CLGN (ENSPLOG00000014259) #33	MGAT4D (ENSPLOG00000014004) #34	ELMOD2 (ENSPLOG00000013886) #35	UCP1 (ENSPLOG00000013796) #36	TBC1D9 (ENSPLOG00000013580) #37	RNF150 (ENSPLOG00000013378)	ZNF330 (ENSPLOG00000013327)	IL15 (ENSPLOG00000013278)	INPP4B (ENSPLOG00000013206)	USP38 (ENSPLOG00000013115)
Cat	MODERN SPECIES	235	ENSFCAG00000009370	JADE1 (ENSFCAG00000027791) #8	SCLT1 (ENSFCAG00000003448) #9	CB1H4orf33 (ENSFCAG00000004951) #10	PCDH10 (ENSFCAG00000024808) #11	ENSFCAG00000050873	ENSFCAG00000053663	PABPC4L (ENSFCAG00000028270) #12	PCDH18 (ENSFCAG00000025770) #15	ENSFCAG00000035896	SLC7A11 (ENSFCAG00000003767) #16	ENSFCAG00000036135	NOCT (ENSFCAG00000030026) #19	ELF2 (ENSFCAG00000031687) #20	MGARP (ENSFCAG00000041698)	NAA15 (ENSFCAG00000025080) #22	RAB33B (ENSFCAG00000039493) #25	SETD7 (ENSFCAG00000015075) #27	MGST2 (ENSFCAG00000028794) #30	MAML3 (ENSFCAG00000036439) #31	ENSFCAG00000045955 #32	CLGN (ENSFCAG00000018363) #33	MGAT4D (ENSFCAG00000025557) #34	ELMOD2 (ENSFCAG00000030559) #35	UCP1 (ENSFCAG00000008906) #36	TBC1D9 (ENSFCAG00000000874) #37	RNF150 (ENSFCAG00000033343)	ZNF330 (ENSFCAG00000025166)	IL15 (ENSFCAG00000030158)	INPP4B (ENSFCAG00000026268)	ENSFCAG00000049302
Caniformia	ANCESTRAL SPECIES	7	ENSGT00390000014635	ENSGT00940000154718	ENSGT00940000159744 #7	ENSGT00940000158247 #8	ENSGT00730000111168 #9	ENSGT00390000006284 #10	ENSGT00940000158277 #11	ENSGT00940000163344 #12	ENSGT00940000156295 #15	ENSGT00940000160324 #16	ENSGT00940000155249 #19	ENSGT00940000154953 #20	ENSGT00990000203987	ENSGT00440000037338	ENSGT00390000002565 #21	ENSGT00950000183174.B.a #22	ENSGT00940000157090 #25	ENSGT00390000004827 #27	ENSGT00940000160288 #30	ENSGT00950000183201.b.b.a #31	ENSGT00390000008828 #32	ENSGT00950000182915.a.a.b #33	ENSGT00940000161998 #34	ENSGT00940000156589 #35	ENSGT00940000160382 #36	ENSGT00940000157878 #37	ENSGT00940000156171	ENSGT00390000017043	ENSGT00390000016264	ENSGT00940000157587	ENSGT00940000158403
Canidae	ANCESTRAL SPECIES	61	ENSGT00940000158247 #8	ENSGT00730000111168 #9	ENSGT00390000006284.`c #10	ENSGT00490000043329.a.a.a.pb.b.a.b.a	ENSGT00940000158277 #11	ENSGT00940000163344 #12	ENSGT00940000156295 #15	ENSGT00940000177650	ENSGT00940000154846.b.s.b	ENSGT00940000160324 #16	ENSGT00940000155249 #19	ENSGT00940000154953 #20	ENSGT00990000203987	ENSGT00440000037338	ENSGT00390000002565.l #21	ENSGT00950000183174.B.a #22	ENSGT00940000157090 #25	ENSGT00390000004827 #27	ENSGT00940000160288 #30	ENSGT00950000183201.b.b.a #31	ENSGT00390000008828.l #32	ENSGT00950000182915.a.a.b #33	ENSGT00940000161998 #34	ENSGT00940000156589 #35	ENSGT00940000160382 #36	ENSGT00940000157878 #37	ENSGT00940000156171	ENSGT00390000017043	ENSGT00390000012647.b	ENSGT00390000016264	ENSGT00940000157587
Canis_lupus	ANCESTRAL SPECIES	48	ENSGT00730000111168 #9	ENSGT00390000006284.`c #10	ENSGT00950000183206.b.c.a.b.a.a.j.a	ENSGT00490000043329.a.a.a.pb.b.a.b.a	ENSGT00940000158277 #11	ENSGT00940000163344 #12	ENSGT00940000156295 #15	ENSGT00940000177650	ENSGT00940000154846.b.s.b	ENSGT00940000160324 #16	ENSGT00940000155249 #19	ENSGT00940000154953 #20	ENSGT00990000203987	ENSGT00440000037338	ENSGT00390000002565.l #21	ENSGT00950000183174.B.a #22	ENSGT00940000157090 #25	ENSGT00390000004827 #27	ENSGT00940000160288 #30	ENSGT00950000183201.b.b.a #31	ENSGT00390000008828.l #32	ENSGT00950000182915.a.a.b #33	ENSGT00940000161998 #34	ENSGT00940000156589 #35	ENSGT00940000160382 #36	ENSGT00940000157878 #37	ENSGT00940000156171	ENSGT00390000017043	ENSGT00390000012647.b	ENSGT00390000016264	ENSGT00940000157587
Dog	MODERN SPECIES	10	JADE1 (ENSCAFG00845024981) #8	SCLT1 (ENSCAFG00845024006) #9	C4orf33 (ENSCAFG00845023586) #10	ENSCAFG00845023548	PCDH10 (ENSCAFG00845023391) #11	PABPC4L (ENSCAFG00845023310) #12	ENSCAFG00845023278	PCDH18 (ENSCAFG00845023190) #15	ENSCAFG00845023150	ENSCAFG00845023129	SLC7A11 (ENSCAFG00845022942) #16	NOCT (ENSCAFG00845022799) #19	ELF2 (ENSCAFG00845022524) #20	MGARP (ENSCAFG00845022342)	ENSCAFG00845022294 #21	NAA15 (ENSCAFG00845022180) #22	RAB33B (ENSCAFG00845022148) #25	SETD7 (ENSCAFG00845022033) #27	MGST2 (ENSCAFG00845021915) #30	MAML3 (ENSCAFG00845021815) #31	SCOC (ENSCAFG00845021519) #32	CLGN (ENSCAFG00845021226) #33	MGAT4D (ENSCAFG00845020851) #34	ELMOD2 (ENSCAFG00845020750) #35	UCP1 (ENSCAFG00845020627) #36	TBC1D9 (ENSCAFG00845020204) #37	RNF150 (ENSCAFG00845019931)	ZNF330 (ENSCAFG00845019797)	ENSCAFG00845019765	IL15 (ENSCAFG00845019627)	INPP4B (ENSCAFG00845019237)
Dingo	MODERN SPECIES	120								PCDH18 (ENSCAFG00020020721) #15	ENSCAFG00020020736	SLC7A11 (ENSCAFG00020020741) #16	NOCT (ENSCAFG00020020824) #19	ELF2 (ENSCAFG00020020827) #20	ENSCAFG00020020830	MGARP (ENSCAFG00020020837)	ENSCAFG00020020841 #21	NAA15 (ENSCAFG00020020850) #22	RAB33B (ENSCAFG00020020861) #25	SETD7 (ENSCAFG00020020866) #27	MGST2 (ENSCAFG00020020869) #30	ENSCAFG00020020876 #31	ENSCAFG00020020879	ENSCAFG00020020881 #32	CLGN (ENSCAFG00020020884) #33	MGAT4D (ENSCAFG00020020893) #34	ELMOD2 (ENSCAFG00020020899) #35	UCP1 (ENSCAFG00020020904) #36	TBC1D9 (ENSCAFG00020020922) #37	RNF150 (ENSCAFG00020020931)	ZNF330 (ENSCAFG00020020936)	ENSCAFG00020020939	IL15 (ENSCAFG00020020943)
Red fox	MODERN SPECIES	153							PCDH18 (ENSVVUG00000021489) #15	ENSVVUG00000021488	SLC7A11 (ENSVVUG00000021487) #16	ENSVVUG00000021484	ENSVVUG00000021478	ENSVVUG00000021476	NOCT (ENSVVUG00000021461) #19	ELF2 (ENSVVUG00000021452) #20	ENSVVUG00000021447	NAA15 (ENSVVUG00000021442) #22	RAB33B (ENSVVUG00000021440) #25	SETD7 (ENSVVUG00000021437) #27	MGST2 (ENSVVUG00000021431) #30	ENSVVUG00000021428 #31	ENSVVUG00000021420 #32	CLGN (ENSVVUG00000021399) #33	MGAT4D (ENSVVUG00000021390) #34	ELMOD2 (ENSVVUG00000021382) #35	UCP1 (ENSVVUG00000021376) #36	TBC1D9 (ENSVVUG00000021364) #37	RNF150 (ENSVVUG00000021359)	ZNF330 (ENSVVUG00000021354)	ENSVVUG00000021352	IL15 (ENSVVUG00000021347)	INPP4B (ENSVVUG00000020925)
Caniformia_b	ANCESTRAL SPECIES	5	ENSGT00390000014635	ENSGT00940000154718	ENSGT00940000159744 #7	ENSGT00940000158247 #8	ENSGT00730000111168 #9	ENSGT00390000006284 #10	ENSGT00940000158277 #11	ENSGT00940000163344 #12	ENSGT00940000156295 #15	ENSGT00940000160324 #16	ENSGT00940000155249 #19	ENSGT00940000154953 #20	ENSGT00990000203987	ENSGT00440000037338	ENSGT00390000002565 #21	ENSGT00950000183174.B.a #22	ENSGT00940000157090 #25	ENSGT00390000004827 #27	ENSGT00940000160288 #30	ENSGT00950000183201.b.b.a #31	ENSGT00390000008828 #32	ENSGT00950000182915.a.a.b #33	ENSGT00940000161998 #34	ENSGT00940000156589 #35	ENSGT00940000160382 #36	ENSGT00940000157878 #37	ENSGT00940000156171	ENSGT00390000017043	ENSGT00390000016264	ENSGT00940000157587	ENSGT00940000158403
Mustelinae	ANCESTRAL SPECIES	156									ENSGT00940000168673	ENSGT00940000156295 #15	ENSGT00940000160324 #16	ENSGT00940000155249 #19	ENSGT00940000154953 #20	ENSGT00440000037338	ENSGT00390000002565 #21	ENSGT00950000183174.B.a #22	ENSGT00940000157090 #25	ENSGT00390000004827 #27	ENSGT00940000160288 #30	ENSGT00950000183201.b.b.a #31	ENSGT00390000008828 #32	ENSGT00950000182915.a.a.b #33	ENSGT00940000161998 #34	ENSGT00940000156589 #35	ENSGT00940000160382 #36	ENSGT00940000157878 #37	ENSGT00940000156171	ENSGT00390000017043	ENSGT00390000016264	ENSGT00940000157587
American mink	MODERN SPECIES	137										PCDH18 (ENSNVIG00000020261) #15	SLC7A11 (ENSNVIG00000020236) #16	NOCT (ENSNVIG00000020230) #19	ELF2 (ENSNVIG00000020145) #20	MGARP (ENSNVIG00000020115)	NDUC1 (ENSNVIG00000020086) #21	NAA15 (ENSNVIG00000020001) #22	ENSNVIG00000019980 #25	SETD7 (ENSNVIG00000019944) #27	MGST2 (ENSNVIG00000019923) #30	MAML3 (ENSNVIG00000019910) #31	SCOC (ENSNVIG00000019861) #32	CLGN (ENSNVIG00000019812) #33	MGAT4D (ENSNVIG00000019734) #34	ELMD2 (ENSNVIG00000019717) #35	UCP1 (ENSNVIG00000019689) #36	TBC1D9 (ENSNVIG00000019647) #37	RNF150 (ENSNVIG00000019611)	ZNF330 (ENSNVIG00000019588)
Ferret	MODERN SPECIES	297							ENSMPUG00000016155	ENSMPUG00000016152	PCDH18 (ENSMPUG00000016149) #15	SLC7A11 (ENSMPUG00000016147) #16	ENSMPUG00000016138	NOCT (ENSMPUG00000016137) #19	ELF2 (ENSMPUG00000016135) #20	MGARP (ENSMPUG00000016132)	NDUFC1 (ENSMPUG00000016130) #21	NAA15 (ENSMPUG00000016126) #22	RAB33B (ENSMPUG00000016125) #25	SETD7 (ENSMPUG00000016124) #27	MGST2 (ENSMPUG00000016123) #30	MAML3 (ENSMPUG00000016122) #31	SCOC (ENSMPUG00000016119) #32	CLGN (ENSMPUG00000016105) #33	ELMOD2 (ENSMPUG00000016104) #35	UCP1 (ENSMPUG00000016103) #36	TBC1D9 (ENSMPUG00000016101) #37	RNF150 (ENSMPUG00000016100)	ZNF330 (ENSMPUG00000016098)	ENSMPUG00000016097	IL15 (ENSMPUG00000016096)	INPP4B (ENSMPUG00000016095)
Ursidae	ANCESTRAL SPECIES	17	ENSGT00390000014635	ENSGT00940000154718	ENSGT00940000159744 #7	ENSGT00940000158247 #8	ENSGT00730000111168 #9	ENSGT00390000006284 #10	ENSGT00940000158277 #11	ENSGT00940000163344 #12	ENSGT00940000156295 #15	ENSGT00940000160324 #16	ENSGT00940000155249 #19	ENSGT00940000154953 #20	ENSGT00990000203987	ENSGT00440000037338	ENSGT00390000002565 #21	ENSGT00950000183174.B.a #22	ENSGT00940000157090 #25	ENSGT00390000004827 #27	ENSGT00940000160288 #30	ENSGT00950000183201.b.b.a #31	ENSGT00390000008828 #32	ENSGT00950000182915.a.a.b #33	ENSGT00940000161998 #34	ENSGT00940000156589 #35	ENSGT00940000160382 #36	ENSGT00940000157878 #37	ENSGT00940000156171	ENSGT00390000017043	ENSGT00390000016264	ENSGT00940000157587	ENSGT00940000158403
Giant Panda	MODERN SPECIES	15	MFSD8 (ENSAMEG00000002722)	ABHD18 (ENSAMEG00000002735)	LARP1B (ENSAMEG00000002748)	PGRMC2 (ENSAMEG00000025276) #7	JADE1 (ENSAMEG00000010542) #8	SCLT1 (ENSAMEG00000010566) #9	C4orf33 (ENSAMEG00000010572) #10	PCDH10 (ENSAMEG00000025868) #11	PABPC4L (ENSAMEG00000020099) #12	PCDH18 (ENSAMEG00000012184) #15	SLC7A11 (ENSAMEG00000011069) #16	NOCT (ENSAMEG00000011061) #19	ELF2 (ENSAMEG00000011046) #20	ENSAMEG00000024797	ENSAMEG00000031523 #21	NAA15 (ENSAMEG00000010988) #22	RAB33B (ENSAMEG00000025425) #25	SETD7 (ENSAMEG00000010974) #27	MGST2 (ENSAMEG00000010971) #30	MAML3 (ENSAMEG00000010963) #31	ENSAMEG00000010957 #32	CLGN (ENSAMEG00000010915) #33	MGAT4D (ENSAMEG00000029626) #34	ELMOD2 (ENSAMEG00000002850) #35	UCP1 (ENSAMEG00000002869) #36	TBC1D9 (ENSAMEG00000002883) #37	RNF150 (ENSAMEG00000002953)	ZNF330 (ENSAMEG00000002960)	IL15 (ENSAMEG00000008060)	INPP4B (ENSAMEG00000008050)	USP38 (ENSAMEG00000009698)
Ursus	ANCESTRAL SPECIES	68										ENSGT00940000160324 #16	ENSGT00940000155249 #19	ENSGT00940000154953 #20	ENSGT00990000203987	ENSGT00440000037338	ENSGT00390000002565 #21	ENSGT00950000183174.B.a #22	ENSGT00940000157090 #25	ENSGT00390000004827 #27	ENSGT00940000160288 #30	ENSGT00950000183201.b.b.a #31	ENSGT00950000182915.a.a.b #33	ENSGT00940000161998 #34	ENSGT00940000156589 #35	ENSGT00940000160382 #36	ENSGT00940000157878 #37	ENSGT00940000156171	ENSGT00390000017043	ENSGT00390000016264	ENSGT00940000157587	ENSGT00940000158403	ENSGT00940000156801
American black bear	MODERN SPECIES	1080																ENSUAMG00000022668 #22	RAB33B (ENSUAMG00000022667) #25	SETD7 (ENSUAMG00000022666) #27	MGST2 (ENSUAMG00000022665) #30	ENSUAMG00000022664 #31
Polar bear	MODERN SPECIES	122										SLC7A11 (ENSUMAG00000014928) #16	NOCT (ENSUMAG00000014943) #19	ELF2 (ENSUMAG00000014947) #20	ENSUMAG00000014951	MGARP (ENSUMAG00000014961)	NDUFC1 (ENSUMAG00000014966) #21	NAA15 (ENSUMAG00000014972) #22	RAB33B (ENSUMAG00000014975) #25	SETD7 (ENSUMAG00000014983) #27	MGST2 (ENSUMAG00000014995) #30	ENSUMAG00000015003 #32	CLGN (ENSUMAG00000015013) #33	MGAT4D (ENSUMAG00000015104) #34	ELMOD2 (ENSUMAG00000015111) #35	UCP1 (ENSUMAG00000015121) #36	TBC1D9 (ENSUMAG00000015143) #37	RNF150 (ENSUMAG00000015188)	ZNF330 (ENSUMAG00000015225)	IL15 (ENSUMAG00000015241)	INPP4B (ENSUMAG00000015269)	ENSUMAG00000015290	ENSUMAG00000015293
Atlantogenata	ANCESTRAL SPECIES	49	ENSGT00940000156316	ENSGT00530000063854	ENSGT00390000014635	ENSGT00940000154718	ENSGT00940000159744 #7	ENSGT00940000158247 #8	ENSGT00730000111168 #9	ENSGT00390000006284 #10	ENSGT00940000158277 #11	ENSGT00940000156295 #15	ENSGT00940000160324 #16	ENSGT00940000155249 #19	ENSGT00940000154953 #20	ENSGT00440000037338	ENSGT00390000002565 #21	ENSGT00950000183174.B.a #22	ENSGT00940000157090 #25	ENSGT00390000004827 #27	ENSGT00940000160288 #30	ENSGT00950000183201.b.b.a #31	ENSGT00950000183201.b.a.b ##31	ENSGT00390000008828 #32	ENSGT00950000182915.a.a.b #33	ENSGT00940000161998 #34	ENSGT00940000156589 #35	ENSGT00940000160382 #36	ENSGT00940000157878 #37	ENSGT00940000156171	ENSGT00390000017043	ENSGT00390000016264	ENSGT00940000157587
Xenarthra	ANCESTRAL SPECIES	87									ENSGT00940000156295 #15	ENSGT00940000160324 #16	ENSGT00940000155249 #19	ENSGT00940000154953 #20	ENSGT00990000203987	ENSGT00440000037338	ENSGT00390000002565 #21	ENSGT00950000183174.B.a #22	ENSGT00940000157090 #25	ENSGT00390000004827 #27	ENSGT00940000160288 #30	ENSGT00950000183201.b.b.a #31	ENSGT00950000183201.b.a.b ##31	ENSGT00390000008828 #32	ENSGT00950000182915.a.a.b #33	ENSGT00940000161998 #34	ENSGT00940000156589 #35	ENSGT00940000157878 #37	ENSGT00940000156171	ENSGT00390000017043	ENSGT00390000016264	ENSGT00940000157587	ENSGT00940000158403
Sloth	MODERN SPECIES	5117																NAA15 (ENSCHOG00000005155) #22
Armadillo	MODERN SPECIES	2885						PCDH18 (ENSDNOG00000044279) #15	SLC7A11 (ENSDNOG00000011228) #16	ENSDNOG00000032621	ENSDNOG00000044938	NOCT (ENSDNOG00000036912) #19	ELF2 (ENSDNOG00000047868) #20	ENSDNOG00000039348	ENSDNOG00000049203	MGARP (ENSDNOG00000033335)	ENSDNOG00000001984 #21	NAA15 (ENSDNOG00000037740) #22	RAB33B (ENSDNOG00000005253) #25	SETD7 (ENSDNOG00000037968) #27	MGST2 (ENSDNOG00000034606) #30	MAML3 (ENSDNOG00000002937) #31	ENSDNOG00000046815 ##31	SCOC (ENSDNOG00000030600) #32	CLGN (ENSDNOG00000004054) #33	ENSDNOG00000038747 #34	ELMOD2 (ENSDNOG00000035842) #35	TBC1D9 (ENSDNOG00000005384) #37	RNF150 (ENSDNOG00000038812)	ZNF330 (ENSDNOG00000048527)	ENSDNOG00000041774	IL15 (ENSDNOG00000034678)	INPP4B (ENSDNOG00000046642)
Afrotheria	ANCESTRAL SPECIES	43	ENSGT00940000156316	ENSGT00530000063854	ENSGT00390000014635	ENSGT00940000154718	ENSGT00940000159744 #7	ENSGT00940000158247 #8	ENSGT00730000111168 #9	ENSGT00390000006284 #10	ENSGT00940000158277 #11	ENSGT00940000156295 #15	ENSGT00940000160324 #16	ENSGT00940000155249 #19	ENSGT00940000154953 #20	ENSGT00440000037338	ENSGT00390000002565 #21	ENSGT00950000183174.B.a #22	ENSGT00940000157090 #25	ENSGT00390000004827 #27	ENSGT00940000160288 #30	ENSGT00950000183201.b.b.a #31	ENSGT00390000008828 #32	ENSGT00950000182915.a.a.b #33	ENSGT00940000161998 #34	ENSGT00940000156589 #35	ENSGT00940000160382 #36	ENSGT00940000157878 #37
Tenrec	MODERN SPECIES	1174																NAA15 (ENSETEG00000017562) #22
Afrotheria_a	ANCESTRAL SPECIES	41	ENSGT00940000156316	ENSGT00530000063854	ENSGT00390000014635	ENSGT00940000154718	ENSGT00940000159744 #7	ENSGT00940000158247 #8	ENSGT00730000111168 #9	ENSGT00390000006284 #10	ENSGT00940000158277 #11	ENSGT00940000156295 #15	ENSGT00940000160324 #16	ENSGT00940000155249 #19	ENSGT00940000154953 #20	ENSGT00440000037338	ENSGT00390000002565 #21	ENSGT00950000183174.B.a #22	ENSGT00940000157090 #25	ENSGT00390000004827 #27	ENSGT00940000160288 #30	ENSGT00950000183201.b.b.a #31	ENSGT00390000008828 #32	ENSGT00950000182915.a.a.b #33	ENSGT00940000161998 #34	ENSGT00940000156589 #35	ENSGT00940000160382 #36	ENSGT00940000157878 #37
Elephant	MODERN SPECIES	95	ABHD18 (ENSLAFG00000004585)	ENSLAFG00000008473	ENSLAFG00000031721	PGRMC2 (ENSLAFG00000008479) #7	JADE1 (ENSLAFG00000001017) #8	SCLT1 (ENSLAFG00000001020) #9	C4orf33 (ENSLAFG00000017212) #10	ENSLAFG00000026294	PCDH10 (ENSLAFG00000014244) #11	PCDH18 (ENSLAFG00000005319) #15	SLC7A11 (ENSLAFG00000017422) #16	NOCT (ENSLAFG00000017184) #19	ELF2 (ENSLAFG00000017189) #20	ENSLAFG00000013172	ENSLAFG00000010459 #21	NAA15 (ENSLAFG00000002574) #22	RAB33B (ENSLAFG00000022351) #25	SETD7 (ENSLAFG00000011095) #27	MGST2 (ENSLAFG00000005558) #30	MAML3 (ENSLAFG00000027199) #31	ENSLAFG00000025689	SCOC (ENSLAFG00000018075) #32	CLGN (ENSLAFG00000018076) #33	MGAT4D (ENSLAFG00000004388) #34	ELMOD2 (ENSLAFG00000007074) #35	UCP1 (ENSLAFG00000007077) #36	TBC1D9 (ENSLAFG00000001318) #37
Hyrax	MODERN SPECIES	4721																NAA15 (ENSPCAG00000003197) #22
Marsupialia	ANCESTRAL SPECIES	7	ENSGT00940000163500	ENSGT00940000161786	ENSGT00940000155803	ENSGT00940000161344	ENSGT00940000158247 #8	ENSGT00730000111168 #9	ENSGT00390000006284 #10	ENSGT00940000158277 #11	ENSGT00940000156295 #15	ENSGT00940000160324 #16	ENSGT00940000155249 #19	ENSGT00940000154953 #20	ENSGT00990000203987	ENSGT00440000037338	ENSGT00390000002565 #21	ENSGT00950000183174.B.a #22	ENSGT00390000002932	ENSGT00940000157090 #25	ENSGT00390000004827 #27	ENSGT00940000160288 #30	ENSGT00950000183201.b.b.a #31	ENSGT00390000008828 #32	ENSGT00950000182915.a.a.b #33	ENSGT00940000161998 #34	ENSGT00940000156589 #35	ENSGT00940000160382 #36	ENSGT00940000157878 #37	ENSGT00940000156171	ENSGT00390000017043	ENSGT00390000016264	ENSGT00940000157587
Marsupialia_b	ANCESTRAL SPECIES	8	ENSGT00940000161786	ENSGT00940000155803	ENSGT00940000153212.e.b	ENSGT00940000158247 #8	ENSGT00730000111168 #9	ENSGT00390000006284 #10	ENSGT00940000158277 #11	ENSGT00940000168767	ENSGT00940000156295 #15	ENSGT00940000160324 #16	ENSGT00940000155249 #19	ENSGT00940000154953 #20	ENSGT00990000203987	ENSGT00440000037338	ENSGT00390000002565 #21	ENSGT00950000183174.B.a #22	ENSGT00390000002932	ENSGT00940000157090 #25	ENSGT00390000004827 #27	ENSGT00940000160288 #30	ENSGT00950000183201.b.b.a #31	ENSGT00390000008828 #32	ENSGT00950000182915.a.a.b #33	ENSGT00940000161998 #34	ENSGT00940000156589 #35	ENSGT00940000160382 #36	ENSGT00940000157878 #37	ENSGT00940000156171.c	ENSGT00940000156171.d	ENSGT00390000017043	ENSGT00390000016264
Diprotodontia	ANCESTRAL SPECIES	98					ENSGT00940000158247 #8	ENSGT00730000111168 #9	ENSGT00390000006284 #10	ENSGT00940000158277 #11	ENSGT00940000168767	ENSGT00940000156295 #15	ENSGT00940000160324 #16	ENSGT00940000155249 #19	ENSGT00940000154953 #20	ENSGT00440000037338	ENSGT00390000002565 #21	ENSGT00950000183174.B.a #22	ENSGT00390000002932	ENSGT00940000157090 #25	ENSGT00390000004827 #27
Diprotodontia_a	ANCESTRAL SPECIES	91					ENSGT00940000158247 #8	ENSGT00730000111168 #9	ENSGT00390000006284 #10	ENSGT00940000158277 #11	ENSGT00940000168767	ENSGT00940000156295 #15	ENSGT00940000160324 #16	ENSGT00940000155249 #19	ENSGT00940000154953 #20	ENSGT00440000037338	ENSGT00390000002565 #21	ENSGT00950000183174.B.a #22	ENSGT00390000002932	ENSGT00940000157090 #25	ENSGT00390000004827 #27
koala	MODERN SPECIES	176									ENSPCIG00000031251	PCDH18 (ENSPCIG00000030904) #15	SLC7A11 (ENSPCIG00000017031) #16	NOCT (ENSPCIG00000027121) #19	ELF2 (ENSPCIG00000027120) #20	ENSPCIG00000033321	ENSPCIG00000036146 #21	NAA15 (ENSPCIG00000027075) #22	ENSPCIG00000027077	RAB33B (ENSPCIG00000032124) #25	SETD7 (ENSPCIG00000027079) #27	ENSPCIG00000013133
Common wonbat	MODERN SPECIES	756	SCLT1 (ENSVURG00010024618) #9	C4orf33 (ENSVURG00010024611) #10	ENSVURG00010024609 #10	ENSVURG00010024606 #10	ENSVURG00010024589	PCDH10 (ENSVURG00010024587) #11	ENSVURG00010024583	ENSVURG00010024574	ENSVURG00010024571	PCDH18 (ENSVURG00010024568) #15	SLC7A11 (ENSVURG00010024566) #16	NOCT (ENSVURG00010024565) #19	ELF2 (ENSVURG00010024562) #20	ENSVURG00010024560	NDUFC1 (ENSVURG00010024558) #21	NAA15 (ENSVURG00010024554) #22	ENSVURG00010024547	RAB33B (ENSVURG00010024544) #25	SETD7 (ENSVURG00010024542) #27	ENSVURG00010024541
Wallaby	MODERN SPECIES	6956																NAA15 (ENSMEUG00000001441) #22
Tasmanian devil	MODERN SPECIES	5	ENSSHAG00000023018	ENSSHAG00000015268 #8	ENSSHAG00000014744 #9	C4orf33 (ENSSHAG00000014506) #10	ENSSHAG00000022179 #10	ENSSHAG00000028697	ENSSHAG00000026770	PCDH10 (ENSSHAG00000021962) #11	ENSSHAG00000017845	PCDH18 (ENSSHAG00000015323) #15	SLC7A11 (ENSSHAG00000012376) #16	NOCT (ENSSHAG00000021061) #19	ELF2 (ENSSHAG00000002684) #20	ENSSHAG00000021462	ENSSHAG00000006642	NAA15 (ENSSHAG00000005053) #22	ENSSHAG00000004271	RAB33B (ENSSHAG00000023446) #25	SETD7 (ENSSHAG00000000798) #27	MGST2 (ENSSHAG00000026843) #30	MAML3 (ENSSHAG00000030735) #31	SCOC (ENSSHAG00000003474) #32	CLGN (ENSSHAG00000001719) #33	ENSSHAG00000001841 #34	ELMOD2 (ENSSHAG00000018184) #35	UCP1 (ENSSHAG00000026436) #36	TBC1D9 (ENSSHAG00000024926) #37	RNF150 (ENSSHAG00000028359)	ZNF330 (ENSSHAG00000032038)	IL15 (ENSSHAG00000023836)	INPP4B (ENSSHAG00000015055)
Opossum	MODERN SPECIES	4	ENSMODG00000038142 #10	PCDH10 (ENSMODG00000020768) #11	ENSMODG00000050511	ENSMODG00000000002	ENSMODG00000049320	ENSMODG00000000016	ENSMODG00000000023	ENSMODG00000024902	ENSMODG00000051597	PCDH18 (ENSMODG00000000040) #15	ENSMODG00000000053 #16	NOCT (ENSMODG00000000087) #19	ELF2 (ENSMODG00000000089) #20	ENSMODG00000025548	NDUFC1 (ENSMODG00000000098) #21	NAA15 (ENSMODG00000000107) #22	ENSMODG00000000115	RAB33B (ENSMODG00000044810) #25	SETD7 (ENSMODG00000000122) #27	MGST2 (ENSMODG00000025529) #30	ENSMODG00000051069 #31	ENSMODG00000038155 #31	SCOC (ENSMODG00000025528) #32	CLGN (ENSMODG00000000160) #33	ENSMODG00000025527 #34	ELMOD2 (ENSMODG00000024910) #35	UCP1 (ENSMODG00000000172) #36	TBC1D9 (ENSMODG00000000209) #37	ZNF330 (ENSMODG00000000223)	IL15 (ENSMODG00000041399)	INPP4B (ENSMODG00000000308)
Platypus	MODERN SPECIES	3	UGT8 (ENSOANG00000050420)	ENSOANG00000037777	NDST4 (ENSOANG00000009292)	NDST3 (ENSOANG00000014942)	PRSS12 (ENSOANG00000014944)	MMRN1 (ENSOANG00000014945)	CCSER1 (ENSOANG00000014947)	ENSOANG00000047963	GRID2 (ENSOANG00000013766)	SMARCAD1 (ENSOANG00000013764)	ENSOANG00000013762	NOCT (ENSOANG00000013761) #19	ELF2 (ENSOANG00000047361) #20	ENSOANG00000043598	NDUFC1 (ENSOANG00000039590) #21	NAA15 (ENSOANG00000008970) #22	ENSOANG00000008971	RAB33B (ENSOANG00000036558) #25	SETD7 (ENSOANG00000015287) #27	MGST2 (ENSOANG00000015288) #30	ENSOANG00000015289 #31	ENSOANG00000051041 #32	CLGN (ENSOANG00000015291) #33	ENSOANG00000015292 #34	ELMOD2 (ENSOANG00000015293) #35	UCP1 (ENSOANG00000015294) #36	TBC1D9 (ENSOANG00000013540) #37	RNF150 (ENSOANG00000050448)	ZNF330 (ENSOANG00000013166)	ENSOANG00000047662	INPP4B (ENSOANG00000013164)
Sauria	ANCESTRAL SPECIES	6	ENSGT00390000014635	ENSGT00940000154718	ENSGT00940000159744 #7	ENSGT00940000158247 #8	ENSGT00730000111168 #9	ENSGT00390000006284 #10	ENSGT01030000234904	ENSGT00940000158277 #11	ENSGT00940000156295 #15	ENSGT00940000160324 #16	ENSGT00940000155249 #19	ENSGT00940000154953 #20	ENSGT00990000203987	ENSGT00440000037338	ENSGT01030000235247	ENSGT00950000183174.B.a #22	ENSGT00940000157090 #25	ENSGT00390000008183	ENSGT00390000004827 #27	ENSGT00940000160288 #30	ENSGT00950000183201.b.b.a #31	ENSGT00390000008828 #32	ENSGT00950000182915.a.a.b #33	ENSGT00940000161998 #34	ENSGT00940000156589 #35	ENSGT00940000157878 #37	ENSGT00940000156171	ENSGT00390000017043	ENSGT00390000016264	ENSGT00940000157587	ENSGT00950000186280
Archelosauria	ANCESTRAL SPECIES	4	ENSGT00390000014635	ENSGT00940000154718	ENSGT00940000159744 #7	ENSGT00940000158247 #8	ENSGT00730000111168 #9	ENSGT00390000006284 #10	ENSGT01030000234904	ENSGT00940000158277 #11	ENSGT00940000156295 #15	ENSGT00940000160324 #16	ENSGT00940000155249 #19	ENSGT00940000154953 #20	ENSGT00990000203987	ENSGT00440000037338	ENSGT01030000235247	ENSGT00950000183174.B.a #22	ENSGT00940000157090 #25	ENSGT00390000008183	ENSGT00390000004827 #27	ENSGT00940000160288 #30	ENSGT00950000183201.b.b.a #31	ENSGT00390000008828 #32	ENSGT00950000182915.a.a.b #33	ENSGT00940000161998 #34	ENSGT00940000156589 #35	ENSGT00940000157878 #37	ENSGT00940000156171	ENSGT00390000017043	ENSGT00390000016264	ENSGT00940000157587	ENSGT00950000186280
Archosauria	ANCESTRAL SPECIES	1	ENSGT00530000063854	ENSGT00390000014635	ENSGT00940000154718	ENSGT00940000159744 #7	ENSGT00940000158247 #8	ENSGT00730000111168 #9	ENSGT00390000006284 #10	ENSGT01030000234904	ENSGT00940000158277 #11	ENSGT00940000156295 #15	ENSGT00940000160324 #16	ENSGT00940000155249 #19	ENSGT00940000154953 #20	ENSGT00440000037338	ENSGT01030000235247	ENSGT00950000183174.B.a #22	ENSGT00940000157090 #25	ENSGT00390000008183	ENSGT00390000004827 #27	ENSGT00940000160288 #30	ENSGT00950000183201.b.b.a #31	ENSGT00390000008828 #32	ENSGT00950000182915.a.a.b #33	ENSGT00940000161998 #34	ENSGT00940000156589 #35	ENSGT00940000157878 #37	ENSGT00940000156171	ENSGT00390000017043	ENSGT00390000016264	ENSGT00940000157587	ENSGT00950000186280
Aves	ANCESTRAL SPECIES	3	ENSGT00530000063854	ENSGT00390000014635	ENSGT00940000154718	ENSGT00940000159744 #7	ENSGT00940000158247 #8	ENSGT00730000111168 #9	ENSGT00390000006284 #10	ENSGT01030000234904	ENSGT00940000158277 #11	ENSGT00940000156295 #15	ENSGT00940000160324 #16	ENSGT00940000155249 #19	ENSGT00940000154953 #20	ENSGT00440000037338	ENSGT01030000235247	ENSGT00950000183174.B.a #22	ENSGT00940000157090 #25	ENSGT00390000008183	ENSGT00390000004827 #27	ENSGT00940000160288 #30	ENSGT00950000183201.b.b.a #31	ENSGT00390000008828 #32	ENSGT00950000182915.a.a.b #33	ENSGT00940000161998 #34	ENSGT00940000156589 #35	ENSGT00940000157878 #37	ENSGT00940000156171	ENSGT00390000017043	ENSGT00390000016264	ENSGT00940000157587	ENSGT00950000186280
Neognathae	ANCESTRAL SPECIES	5	ENSGT00530000063854	ENSGT00390000014635	ENSGT00940000154718	ENSGT00940000159744 #7	ENSGT00940000158247 #8	ENSGT00730000111168 #9	ENSGT00390000006284 #10	ENSGT01030000234904	ENSGT00940000158277 #11	ENSGT00940000156295 #15	ENSGT00940000160324 #16	ENSGT00940000155249 #19	ENSGT00940000154953 #20	ENSGT00440000037338	ENSGT01030000235247	ENSGT00950000183174.B.a #22	ENSGT00940000157090 #25	ENSGT00390000008183	ENSGT00390000004827 #27	ENSGT00940000160288 #30	ENSGT00950000183201.b.b.a #31	ENSGT00390000008828 #32	ENSGT00950000182915.a.a.b #33	ENSGT00940000161998 #34	ENSGT00940000156589 #35	ENSGT00940000157878 #37	ENSGT00940000156171	ENSGT00390000017043	ENSGT00390000016264	ENSGT00940000157587	ENSGT00950000186280
Neognathae_b	ANCESTRAL SPECIES	4	ENSGT00530000063854	ENSGT00390000014635	ENSGT00940000154718	ENSGT00940000159744 #7	ENSGT00940000158247 #8	ENSGT00730000111168 #9	ENSGT00390000006284 #10	ENSGT01030000234904	ENSGT00940000158277 #11	ENSGT00940000156295 #15	ENSGT00940000160324 #16	ENSGT00940000155249 #19	ENSGT00940000154953 #20	ENSGT00440000037338	ENSGT01030000235247	ENSGT00950000183174.B.a #22	ENSGT00940000157090 #25	ENSGT00390000008183	ENSGT00390000004827 #27	ENSGT00940000160288 #30	ENSGT00950000183201.b.b.a #31	ENSGT00390000008828 #32	ENSGT00950000182915.a.a.b #33	ENSGT00940000161998 #34	ENSGT00940000156589 #35	ENSGT00940000157878 #37	ENSGT00940000156171	ENSGT00390000017043	ENSGT00390000016264	ENSGT00940000157587	ENSGT00940000158403
Neognathae_c	ANCESTRAL SPECIES	3	ENSGT00940000156316	ENSGT00530000063854	ENSGT00390000014635	ENSGT00940000154718	ENSGT00940000159744 #7	ENSGT00940000158247 #8	ENSGT00730000111168 #9	ENSGT00390000006284 #10	ENSGT01030000234904	ENSGT00940000158277 #11	ENSGT00940000156295 #15	ENSGT00940000160324 #16	ENSGT00940000155249 #19	ENSGT00940000154953 #20	ENSGT00440000037338	ENSGT00950000183174.B.a #22	ENSGT00940000157090 #25	ENSGT00390000008183	ENSGT00390000004827 #27	ENSGT00940000160288 #30	ENSGT00950000183201.b.b.a #31	ENSGT00390000008828 #32	ENSGT00950000182915.a.a.b #33	ENSGT00940000161998 #34	ENSGT00940000156589 #35	ENSGT00940000157878 #37	ENSGT00940000156171	ENSGT00390000017043	ENSGT00390000016264	ENSGT00940000157587	ENSGT00940000158403
Golden eagle	MODERN SPECIES		PLK4 (ENSACCG00020004823)	MFSD8 (ENSACCG00020004811)	ABHD18 (ENSACCG00020004803)	LARP1B (ENSACCG00020004785)	PGRMC2 (ENSACCG00020004775) #7	JADE1 (ENSACCG00020004769) #8	SCLT1 (ENSACCG00020004760) #9	C4orf33 (ENSACCG00020004752) #10	ENSACCG00020004749	PCDH10 (ENSACCG00020004741) #11	PCDH18 (ENSACCG00020004729) #15	SLC7A11 (ENSACCG00020004716) #16	NOCT (ENSACCG00020004698) #19	ELF2 (ENSACCG00020004688) #20	MGARP (ENSACCG00020004679)	NAA15 (ENSACCG00020004663) #22	RAB33B (ENSACCG00020004649) #25	ENSACCG00020004643	SETD7 (ENSACCG00020004635) #27	MGST2 (ENSACCG00020004630) #30	MAML3 (ENSACCG00020004615) #31	SCOC (ENSACCG00020004596) #32	CLGN (ENSACCG00020004573) #33	MGAT4D (ENSACCG00020004548) #34	ELMOD2 (ENSACCG00020004532) #35	TBC1D9 (ENSACCG00020004481) #37	RNF150 (ENSACCG00020004420)	ZNF330 (ENSACCG00020004408)	IL15 (ENSACCG00020004400)	INPP4B (ENSACCG00020004385)	ENSACCG00020004358
Kakapo	MODERN SPECIES	24	RUFY3 (ENSSHBG00005010297)	GRSF1 (ENSSHBG00005000907)	MOB1B (ENSSHBG00005000896)	ENSSHBG00005000879	JADE1 (ENSSHBG00005019760) #8	SCLT1 (ENSSHBG00005019749) #9	C4orf33 (ENSSHBG00005019745) #10	ENSSHBG00005019714	PCDH10 (ENSSHBG00005019708) #11	PCDH18 (ENSSHBG00005019701) #15	SLC7A11 (ENSSHBG00005019696) #16	ENSSHBG00005019691	NOCT (ENSSHBG00005019690) #19	ELF2 (ENSSHBG00005019685) #20	ENSSHBG00005019674	NAA15 (ENSSHBG00005019557) #22	RAB33B (ENSSHBG00005019533) #25	ENSSHBG00005019531	SETD7 (ENSSHBG00005019529) #27	MGST2 (ENSSHBG00005019528) #30	MAML3 (ENSSHBG00005019526) #31	SCOC (ENSSHBG00005019524) #32	CLGN (ENSSHBG00005019521) #33	ENSSHBG00005019516 #34	ENSSHBG00005019510 #34	ELMOD2 (ENSSHBG00005019507) #35	TBC1D9 (ENSSHBG00005019503) #37	RNF150 (ENSSHBG00005019495)	ZNF330 (ENSSHBG00005019490)	IL15 (ENSSHBG00005019486)	INPP4B (ENSSHBG00005019479)
Passeriformes	ANCESTRAL SPECIES	4	ENSGT00940000156316	ENSGT00530000063854	ENSGT00390000014635	ENSGT00940000154718	ENSGT00940000159744 #7	ENSGT00940000158247 #8	ENSGT00730000111168 #9	ENSGT00390000006284 #10	ENSGT00940000158277 #11	ENSGT01030000234904	ENSGT00940000156295 #15	ENSGT00940000160324 #16	ENSGT00940000155249 #19	ENSGT00940000154953 #20	ENSGT01030000235247	ENSGT00950000183174.B.a #22	ENSGT00940000157090 #25	ENSGT00390000008183	ENSGT00390000004827 #27	ENSGT00950000183201.b.b.a #31	ENSGT00390000008828 #32	ENSGT00950000182915.a.a.b #33	ENSGT00940000161998 #34	ENSGT00940000156589 #35	ENSGT00940000157878 #37	ENSGT00940000156171	ENSGT00390000017043	ENSGT00390000016264	ENSGT00940000157587	ENSGT00940000158403	ENSGT00940000156801
Passeriformes_d	ANCESTRAL SPECIES	4	ENSGT00940000156316	ENSGT00530000063854	ENSGT00390000014635	ENSGT00940000154718	ENSGT00940000159744 #7	ENSGT00940000158247 #8	ENSGT00730000111168 #9	ENSGT00390000006284 #10	ENSGT00940000158277 #11	ENSGT01030000234904	ENSGT00940000156295 #15	ENSGT00940000160324 #16	ENSGT00940000155249 #19	ENSGT00940000154953 #20	ENSGT01030000235247	ENSGT00950000183174.B.a #22	ENSGT00940000157090 #25	ENSGT00390000008183	ENSGT00390000004827 #27	ENSGT00950000183201.b.b.a.t #31	ENSGT00390000008828 #32	ENSGT00950000182915.a.a.b #33	ENSGT00940000161998 #34	ENSGT00940000156589 #35	ENSGT00940000157878 #37	ENSGT00940000156171.b	ENSGT00390000017043	ENSGT00390000016264	ENSGT00940000157587.i	ENSGT00940000158403	ENSGT00940000156801
Passeriformes_g	ANCESTRAL SPECIES	59													ENSGT00940000155249 #19	ENSGT00940000154953 #20	ENSGT01030000235247	ENSGT00950000183174.B.a #22	ENSGT00940000157090 #25	ENSGT00390000008183	ENSGT00390000004827 #27	ENSGT00950000183201.b.b.a.t #31	ENSGT00390000008828 #32	ENSGT00950000182915.a.a.b #33	ENSGT00940000161998 #34	ENSGT00940000156589 #35	ENSGT00940000157878 #37	ENSGT00940000156171.b	ENSGT00390000017043	ENSGT00390000016264	ENSGT00940000157587.i	ENSGT00940000158403	ENSGT00940000156801
Passeroidea	ANCESTRAL SPECIES	61													ENSGT00940000155249 #19	ENSGT00940000154953 #20	ENSGT01030000235247	ENSGT00950000183174.B.a #22	ENSGT00940000157090 #25	ENSGT00390000008183	ENSGT00390000004827 #27	ENSGT00950000183201.b.b.a.t #31	ENSGT00390000008828 #32	ENSGT00950000182915.a.a.b #33	ENSGT00940000161998 #34	ENSGT00940000156589 #35	ENSGT00940000157878 #37	ENSGT00940000156171.b	ENSGT00390000017043	ENSGT00390000016264	ENSGT00940000157587.i	ENSGT00940000158403	ENSGT00940000156801
Common canary	MODERN SPECIES	48												PCDH18 (ENSSCAG00000013030) #15	NOCT (ENSSCAG00000013027) #19	ELF2 (ENSSCAG00000013024) #20	ENSSCAG00000013012	NAA15 (ENSSCAG00000012999) #22	RAB33B (ENSSCAG00000012996) #25	ENSSCAG00000012990	SETD7 (ENSSCAG00000012985) #27	MAML3 (ENSSCAG00000012979) #31	SCOC (ENSSCAG00000012976) #32	CLGN (ENSSCAG00000012966) #33	MGAT4D (ENSSCAG00000012957) #34	ELMOD2 (ENSSCAG00000012951) #35	TBC1D9 (ENSSCAG00000012722) #37	RNF150 (ENSSCAG00000012679)	ZNF330 (ENSSCAG00000012672)	IL15 (ENSSCAG00000012668)	INPP4B (ENSSCAG00000012655)	USP38 (ENSSCAG00000012638)	GAB1 (ENSSCAG00000012630)
Zebra finch	MODERN SPECIES	25	TTC29 (ENSTGUG00000002636)	EDNRA (ENSTGUG00000002625)	TMEM184C (ENSTGUG00000002618)	PRMT9 (ENSTGUG00000002612)	ARHGAP10 (ENSTGUG00000002594)	NR3C2 (ENSTGUG00000002577)	DCLK2 (ENSTGUG00000002559)	LRBA (ENSTGUG00000002514)	MAB21L2 (ENSTGUG00000002558)	PPM1K (ENSTGUG00000002504)	WDFY3 (ENSTGUG00000002468)	ENSTGUG00000004886	NOCT (ENSTGUG00000002465) #19	ELF2 (ENSTGUG00000002458) #20	ENSTGUG00000019461	NAA15 (ENSTGUG00000002442) #22	RAB33B (ENSTGUG00000022994) #25	SETD7 (ENSTGUG00000028538) #27	SMARCA5 (ENSTGUG00000002408)	GAB1 (ENSTGUG00000002400)	USP38 (ENSTGUG00000002389)	INPP4B (ENSTGUG00000021408)	ENSTGUG00000025612	ENSTGUG00000002368	ZNF330 (ENSTGUG00000002360)	RNF150 (ENSTGUG00000029099)	TBC1D9 (ENSTGUG00000002325) #37	ELMOD2 (ENSTGUG00000028132) #35	ENSTGUG00000002287 #34	SCOC (ENSTGUG00000026865) #32	MAML3 (ENSTGUG00000002284) #31
Medium ground finch	MODERN SPECIES	156													NOCT (ENSGFOG00000004806) #19	ELF2 (ENSGFOG00000004812) #20	ENSGFOG00000004827	NAA15 (ENSGFOG00000004860) #22	RAB33B (ENSGFOG00000004877) #25	ENSGFOG00000004883	SETD7 (ENSGFOG00000004890) #27	ENSGFOG00000004897 #31	ENSGFOG00000004903 #31	SCOC (ENSGFOG00000004919) #32	CLGN (ENSGFOG00000004932) #33	MGAT4D (ENSGFOG00000004985) #34	ELMOD2 (ENSGFOG00000005110) #35	TBC1D9 (ENSGFOG00000005171) #37	RNF150 (ENSGFOG00000006804)	ZNF330 (ENSGFOG00000006807)	INPP4B (ENSGFOG00000006820)	IL15 (ENSGFOG00000006861)	USP38 (ENSGFOG00000006876)
Flycatcher	MODERN SPECIES	22	MFSD8 (ENSFALG00000008125)	ABHD18 (ENSFALG00000008119)	LARP1B (ENSFALG00000008098)	ENSFALG00000024606 #7	JADE1 (ENSFALG00000008083) #8	SCLT1 (ENSFALG00000008081) #9	C4orf33 (ENSFALG00000008077) #10	ENSFALG00000011096	PCDH10 (ENSFALG00000011099) #11	ENSFALG00000025531	PCDH18 (ENSFALG00000004833) #15	SLC7A11 (ENSFALG00000004848) #16	NOCT (ENSFALG00000004876) #19	ELF2 (ENSFALG00000004881) #20	ENSFALG00000026263	NAA15 (ENSFALG00000004885) #22	RAB33B (ENSFALG00000023528) #25	ENSFALG00000004889	SETD7 (ENSFALG00000004893) #27	MAML3 (ENSFALG00000004900) #31	SCOC (ENSFALG00000027344) #32	CLGN (ENSFALG00000004907) #33	MGAT4D (ENSFALG00000004911) #34	ELMOD2 (ENSFALG00000004921) #35	TBC1D9 (ENSFALG00000004931) #37	ENSFALG00000004942	ENSFALG00000027544	ZNF330 (ENSFALG00000022973)	IL15 (ENSFALG00000027447)	INPP4B (ENSFALG00000004964)	USP38 (ENSFALG00000004974)
Great tit	MODERN SPECIES	23	SPATA5 (ENSPMJG00000007727)	SPRY1 (ENSPMJG00000007747)	ANKRD50 (ENSPMJG00000007797)	FAT4 (ENSPMJG00000007824)	INTU (ENSPMJG00000007850)	HSPA4L (ENSPMJG00000007851)	PLK4 (ENSPMJG00000007852)	MFSD8 (ENSPMJG00000007855)	ABHD18 (ENSPMJG00000007858)	LARP1B (ENSPMJG00000007861)	PGRMC2 (ENSPMJG00000007919) #7	JADE1 (ENSPMJG00000007922) #8	SCLT1 (ENSPMJG00000007930) #9	C4orf33 (ENSPMJG00000007931) #10	ENSPMJG00000007945	NAA15 (ENSPMJG00000008006) #22	RAB33B (ENSPMJG00000008008) #25	ENSPMJG00000008009	SETD7 (ENSPMJG00000008010) #27	MAML3 (ENSPMJG00000008093) #31	SCOC (ENSPMJG00000008094) #32	CLGN (ENSPMJG00000008161) #33	MGAT4D (ENSPMJG00000008164) #34	ELMOD2 (ENSPMJG00000008165) #35	TBC1D9 (ENSPMJG00000008167) #37	RNF150 (ENSPMJG00000008224)	ENSPMJG00000008225	ZNF330 (ENSPMJG00000008227)	IL15 (ENSPMJG00000008228)	INPP4B (ENSPMJG00000008257)	USP38 (ENSPMJG00000008289)
Galloanserae	ANCESTRAL SPECIES	5	ENSGT00940000156316	ENSGT00530000063854	ENSGT00390000014635	ENSGT00940000154718	ENSGT00940000159744 #7	ENSGT00940000158247 #8	ENSGT00730000111168 #9	ENSGT00390000006284 #10	ENSGT01030000234904	ENSGT00940000158277 #11	ENSGT00940000156295 #15	ENSGT00940000160324 #16	ENSGT00940000155249 #19	ENSGT00940000154953 #20	ENSGT00440000037338	ENSGT00950000183174.B.a #22	ENSGT00940000157090 #25	ENSGT00390000008183	ENSGT00390000004827 #27	ENSGT00940000160288 #30	ENSGT00950000183201.b.b.a #31	ENSGT00390000008828 #32	ENSGT00950000182915.a.a.b #33	ENSGT00940000161998 #34	ENSGT00940000156589 #35	ENSGT00940000157878 #37	ENSGT00940000156171	ENSGT00390000017043	ENSGT00390000016264	ENSGT00940000157587	ENSGT00950000186280
Anatidae	ANCESTRAL SPECIES	2	ENSGT00940000156316	ENSGT00530000063854	ENSGT00390000014635	ENSGT00940000154718	ENSGT00940000159744 #7	ENSGT00940000158247 #8	ENSGT00730000111168 #9	ENSGT00390000006284 #10	ENSGT01030000234904	ENSGT00940000158277 #11	ENSGT00940000156295 #15	ENSGT00940000160324 #16	ENSGT00940000155249 #19	ENSGT00940000154953 #20	ENSGT00440000037338	ENSGT00950000183174.B.a #22	ENSGT00940000157090 #25	ENSGT00390000008183	ENSGT00390000004827 #27	ENSGT00940000160288 #30	ENSGT00950000183201.b.b.a #31	ENSGT00390000008828 #32	ENSGT00950000182915.a.a.b #33	ENSGT00940000161998 #34	ENSGT00940000156589 #35	ENSGT00940000157878 #37	ENSGT00940000156171	ENSGT00390000017043	ENSGT00390000016264	ENSGT00940000157587	ENSGT00950000186280
Pink-footed goose	MODERN SPECIES	122												PCDH18 (ENSABRG00000012637) #15	SLC7A11 (ENSABRG00000012645) #16	NOCT (ENSABRG00000012689) #19	ELF2 (ENSABRG00000012711) #20	NAA15 (ENSABRG00000012922) #22	RAB33B (ENSABRG00000013651) #25	SETD7 (ENSABRG00000013691) #27	MGST2 (ENSABRG00000013826) #30	MAML3 (ENSABRG00000013850) #31	SCOC (ENSABRG00000013854) #32	CLGN (ENSABRG00000013894) #33	MGAT4D (ENSABRG00000014024) #34	ENSABRG00000014035 #35	ENSABRG00000014042 #35	TBC1D9 (ENSABRG00000014115) #37	RNF150 (ENSABRG00000014668)	ZNF330 (ENSABRG00000014702)	IL15 (ENSABRG00000014724)	INPP4B (ENSABRG00000014770)	ENSABRG00000014915
Duck	MODERN SPECIES	22	ENSAPLG00000023376	ENSAPLG00000009773	LARP1B (ENSAPLG00000010129)	PGRMC2 (ENSAPLG00000028947) #7	JADE1 (ENSAPLG00000015188) #8	SCLT1 (ENSAPLG00000014774) #9	C4orf33 (ENSAPLG00000014754) #10	ENSAPLG00000017453	PCDH10 (ENSAPLG00000020479) #11	ENSAPLG00000017392	PCDH18 (ENSAPLG00000014396) #15	SLC7A11 (ENSAPLG00000014089) #16	NOCT (ENSAPLG00000026879) #19	ELF2 (ENSAPLG00000014003) #20	MGARP (ENSAPLG00000025584)	NAA15 (ENSAPLG00000006263) #22	RAB33B (ENSAPLG00000022797) #25	ENSAPLG00000027541	SETD7 (ENSAPLG00000007008) #27	MGST2 (ENSAPLG00000007262) #30	MAML3 (ENSAPLG00000007272) #31	SCOC (ENSAPLG00000023909) #32	CLGN (ENSAPLG00000007372) #33	MGAT4D (ENSAPLG00000007550) #34	ELMOD2 (ENSAPLG00000008211) #35	TBC1D9 (ENSAPLG00000008419) #37	RNF150 (ENSAPLG00000009408)	ZNF330 (ENSAPLG00000009489)	IL15 (ENSAPLG00000004865)	INPP4B (ENSAPLG00000008033)	USP38 (ENSAPLG00000019928)
Phasianidae	ANCESTRAL SPECIES	2	ENSGT00940000153441.a.a	ENSGT00390000004594.a	ENSGT00390000011576.a	ENSGT00390000014876	ENSGT00940000153763.b	ENSGT00940000158460	ENSGT00940000155875	ENSGT00940000157620	ENSGT00940000158277 #11	ENSGT01030000234904	ENSGT00940000156295 #15	ENSGT00940000160324 #16	ENSGT00940000155249 #19	ENSGT00940000154953 #20	ENSGT01030000235247	ENSGT00950000183174.B.a #22	ENSGT00940000157090 #25	ENSGT00390000008183	ENSGT00390000004827 #27	ENSGT00940000160288 #30	ENSGT00950000183201.b.b.a #31	ENSGT00390000008828 #32	ENSGT00950000182915.a.a.b #33	ENSGT00940000161998 #34	ENSGT00940000156589 #35	ENSGT00940000157878 #37	ENSGT00940000156171	ENSGT00390000017043	ENSGT00390000016264	ENSGT00940000157587	ENSGT00940000158403
Phasianidae_b	ANCESTRAL SPECIES	4	ENSGT00940000157188	ENSGT00940000153441.a.a	ENSGT00390000004594.a	ENSGT00390000011576.a	ENSGT00390000014876	ENSGT00940000153763.b	ENSGT00940000158460	ENSGT00940000155875	ENSGT00940000157620	ENSGT00940000158277 #11	ENSGT01030000234904	ENSGT00940000156295 #15	ENSGT00940000160324 #16	ENSGT00940000155249 #19	ENSGT00940000154953 #20	ENSGT00950000183174.B.a #22	ENSGT00940000157090 #25	ENSGT00390000008183	ENSGT00390000004827 #27	ENSGT00940000160288 #30	ENSGT00950000183201.b.b.a #31	ENSGT00390000008828 #32	ENSGT00950000182915.a.a.b #33	ENSGT00940000161998 #34	ENSGT00940000156589 #35	ENSGT00940000157878 #37	ENSGT00940000156171	ENSGT00390000017043	ENSGT00390000016264	ENSGT00940000157587	ENSGT00940000158403
Chicken	MODERN SPECIES	33	HPF1 (ENSGALG00010008358)	CLCN3 (ENSGALG00010008372)	NEK1 (ENSGALG00010008412)	SH3RF1 (ENSGALG00010008431)	CBR4 (ENSGALG00010008007)	ENSGALG00010009184	PCDH10 (ENSGALG00010009214) #11	ENSGALG00010009222	PCDH18 (ENSGALG00010009234) #15	ENSGALG00010008003	SLC7A11 (ENSGALG00010008444) #16	NOCT (ENSGALG00010008469) #19	ELF2 (ENSGALG00010010009) #20	ENSGALG00010008500	ENSGALG00010008509	NAA15 (ENSGALG00010010037) #22	RAB33B (ENSGALG00010008534) #25	ENSGALG00010009109	SETD7 (ENSGALG00010009114) #27	MGST2 (ENSGALG00010010107) #30	MAML3 (ENSGALG00010009141) #31	SCOC (ENSGALG00010009127) #32	CLGN (ENSGALG00010009166) #33	MGAT4D (ENSGALG00010009259) #34	ELMOD2 (ENSGALG00010009279) #35	TBC1D9 (ENSGALG00010009306) #37	RNF150 (ENSGALG00010009323)	ZNF330 (ENSGALG00010009337)	IL15 (ENSGALG00010009362)	INPP4B (ENSGALG00010009381)	USP38 (ENSGALG00010007885)
Turkey	MODERN SPECIES	24	ENSMGAG00000017559	PALLD (ENSMGAG00000002454)	AADAT (ENSMGAG00000002461)	MFAP3L (ENSMGAG00000002495)	HPF1 (ENSMGAG00000002498)	CLCN3 (ENSMGAG00000002509)	NEK1 (ENSMGAG00000017234)	SH3RF1 (ENSMGAG00000002651)	CBR4 (ENSMGAG00000002684)	ENSMGAG00000018383	PCDH18 (ENSMGAG00000002703) #15	SLC7A11 (ENSMGAG00000002726) #16	NOCT (ENSMGAG00000002778) #19	ELF2 (ENSMGAG00000002791) #20	ENSMGAG00000022293	NAA15 (ENSMGAG00000002831) #22	RAB33B (ENSMGAG00000002900) #25	ENSMGAG00000002901	SETD7 (ENSMGAG00000002907) #27	MGST2 (ENSMGAG00000002920) #30	MAML3 (ENSMGAG00000002925) #31	SCOC (ENSMGAG00000002939) #32	CLGN (ENSMGAG00000002949) #33	MGAT4D (ENSMGAG00000002979) #34	ENSMGAG00000019878	ELMOD2 (ENSMGAG00000003053) #35	TBC1D9 (ENSMGAG00000003086) #37	RNF150 (ENSMGAG00000003272)	ZNF330 (ENSMGAG00000003187)	IL15 (ENSMGAG00000003247)	INPP4B (ENSMGAG00000003288)
Japanese quail	MODERN SPECIES	22	PALLD (ENSCJPG00005000764)	AADAT (ENSCJPG00005000766)	MFAP3L (ENSCJPG00005000768)	HPF1 (ENSCJPG00005000770)	CLCN3 (ENSCJPG00005000773)	NEK1 (ENSCJPG00005000788)	SH3RF1 (ENSCJPG00005000830)	CBR4 (ENSCJPG00005000833)	PCDH10 (ENSCJPG00005000865) #11	ENSCJPG00005000866	PCDH18 (ENSCJPG00005001014) #15	SLC7A11 (ENSCJPG00005001052) #16	NOCT (ENSCJPG00005001095) #19	ELF2 (ENSCJPG00005001105) #20	ENSCJPG00005001114	NAA15 (ENSCJPG00005001125) #22	ENSCJPG00005001134	RAB33B (ENSCJPG00005001138) #25	ENSCJPG00005001141	SETD7 (ENSCJPG00005001153) #27	MGST2 (ENSCJPG00005001427) #30	MAML3 (ENSCJPG00005001430) #31	SCOC (ENSCJPG00005001434) #32	CLGN (ENSCJPG00005001437) #33	MGAT4D (ENSCJPG00005001445) #34	ELMOD2 (ENSCJPG00005001450) #35	TBC1D9 (ENSCJPG00005001456) #37	RNF150 (ENSCJPG00005001471)	ZNF330 (ENSCJPG00005001476)	IL15 (ENSCJPG00005001485)	INPP4B (ENSCJPG00005001499)
African ostrich	MODERN SPECIES	1080	PLK4 (ENSSCUG00000015000)	MFSD8 (ENSSCUG00000014995)	ABHD18 (ENSSCUG00000014990)	LARP1B (ENSSCUG00000014969)	ENSSCUG00000014951 #7	JADE1 (ENSSCUG00000014942) #8	SCLT1 (ENSSCUG00000014922) #9	C4orf33 (ENSSCUG00000014914) #10	ENSSCUG00000014868 #11	ENSSCUG00000014866	PCDH18 (ENSSCUG00000014835) #15	SLC7A11 (ENSSCUG00000016644) #16	NOCT (ENSSCUG00000016641) #19	ELF2 (ENSSCUG00000016638) #20	ENSSCUG00000016635	NAA15 (ENSSCUG00000016631) #22	RAB33B (ENSSCUG00000016629) #25	ENSSCUG00000016628	SETD7 (ENSSCUG00000016627) #27	MGST2 (ENSSCUG00000016624) #30	MAML3 (ENSSCUG00000016623) #31	SCOC (ENSSCUG00000016619) #32	CLGN (ENSSCUG00000016617) #33	MGAT4D (ENSSCUG00000016615) #34	ELMOD2 (ENSSCUG00000016613) #35	TBC1D9 (ENSSCUG00000016598) #37	RNF150 (ENSSCUG00000016590)	ZNF330 (ENSSCUG00000016586)	IL15 (ENSSCUG00000016583)	INPP4B (ENSSCUG00000016573)	USP38 (ENSSCUG00000016550)
Australian saltwater crocodile	MODERN SPECIES	33												PCDH18 (ENSCPRG00005007637) #15	SLC7A11 (ENSCPRG00005007667) #16	NOCT (ENSCPRG00005008118) #19	ELF2 (ENSCPRG00005008123) #20	NAA15 (ENSCPRG00005008142) #22	RAB33B (ENSCPRG00005008151) #25	SETD7 (ENSCPRG00005008154) #27	MGST2 (ENSCPRG00005008169) #30	MAML3 (ENSCPRG00005008174) #31	SCOC (ENSCPRG00005008197) #32	CLGN (ENSCPRG00005008203) #33	MGAT4D (ENSCPRG00005008225) #34	ENSCPRG00005008274	ELMOD2 (ENSCPRG00005008282) #35	TBC1D9 (ENSCPRG00005008297) #37	RNF150 (ENSCPRG00005008334)	ZNF330 (ENSCPRG00005008341)	IL15 (ENSCPRG00005008351)	INPP4B (ENSCPRG00005008369)	ENSCPRG00005008392
Cryptodira	ANCESTRAL SPECIES	2	ENSGT00530000063854	ENSGT00390000014635	ENSGT00940000154718	ENSGT00940000159744 #7	ENSGT00940000158247 #8	ENSGT00730000111168 #9	ENSGT00390000006284 #10	ENSGT00940000158277 #11	ENSGT00940000156295 #15	ENSGT00940000160324 #16	ENSGT00940000155249 #19	ENSGT00940000154953 #20	ENSGT00990000203987	ENSGT00440000037338	ENSGT01030000235247	ENSGT00950000183174.B.a #22	ENSGT00940000157090 #25	ENSGT00390000008183	ENSGT00390000004827 #27	ENSGT00940000160288 #30	ENSGT00950000183201.b.b.a #31	ENSGT00390000008828 #32	ENSGT00950000182915.a.a.b #33	ENSGT00940000161998 #34	ENSGT00940000156589 #35	ENSGT00940000157878 #37	ENSGT00940000156171	ENSGT00390000017043	ENSGT00390000016264	ENSGT00940000157587	ENSGT00940000158403
Testudinoidea	ANCESTRAL SPECIES	10	ENSGT00530000063854	ENSGT00390000014635	ENSGT00940000154718	ENSGT00940000159744 #7	ENSGT00940000158247 #8	ENSGT00730000111168 #9	ENSGT00390000006284 #10	ENSGT00940000158277 #11	ENSGT00940000156295 #15	ENSGT00940000160324 #16	ENSGT00940000155249 #19	ENSGT00940000154953 #20	ENSGT00990000203987	ENSGT00440000037338	ENSGT01030000235247	ENSGT00950000183174.B.a #22	ENSGT00940000157090 #25	ENSGT00390000008183	ENSGT00390000004827.f #27	ENSGT00940000160288 #30	ENSGT00950000183201.b.b.a #31	ENSGT00390000008828 #32	ENSGT00950000182915.a.a.b #33	ENSGT00940000161998 #34	ENSGT00940000156589 #35	ENSGT00940000157878 #37	ENSGT00940000156171	ENSGT00390000017043	ENSGT00390000016264	ENSGT00940000157587	ENSGT00940000158403
Testudinidae	ANCESTRAL SPECIES	11	ENSGT00530000063854	ENSGT00390000014635	ENSGT00940000154718	ENSGT00940000159744 #7	ENSGT00940000158247 #8	ENSGT00730000111168 #9	ENSGT00390000006284 #10	ENSGT00940000158277 #11	ENSGT00940000156295 #15	ENSGT00940000160324 #16	ENSGT00940000155249 #19	ENSGT00940000154953 #20	ENSGT00990000203987	ENSGT00440000037338	ENSGT01030000235247	ENSGT00950000183174.B.a #22	ENSGT00940000157090 #25	ENSGT00390000004827.f #27	ENSGT00940000160288 #30	ENSGT00950000183201.b.b.a #31	ENSGT00390000008828 #32	ENSGT00950000182915.a.a.b #33	ENSGT00940000161998 #34	ENSGT00940000156589 #35	ENSGT00940000157878 #37	ENSGT00940000156171	ENSGT00390000017043	ENSGT00390000016264	ENSGT00940000157587	ENSGT00940000158403	ENSGT00940000156801
Goode s thornscrub tortoise	MODERN SPECIES	19	MFSD8 (ENSGEVG00005011436)	ABHD18 (ENSGEVG00005011381)	LARP1B (ENSGEVG00005011316)	PGRMC2 (ENSGEVG00005011283) #7	JADE1 (ENSGEVG00005011237) #8	SCLT1 (ENSGEVG00005011140) #9	C4orf33 (ENSGEVG00005011103) #10	ENSGEVG00005010945 #10	PCDH10 (ENSGEVG00005010879) #11	PCDH18 (ENSGEVG00005010708) #15	SLC7A11 (ENSGEVG00005010456) #16	NOCT (ENSGEVG00005010413) #19	ELF2 (ENSGEVG00005010370) #20	MGARP (ENSGEVG00005010337)	ENSGEVG00005010322	NAA15 (ENSGEVG00005010283) #22	RAB33B (ENSGEVG00005010260) #25	SETD7 (ENSGEVG00005010230) #27	MGST2 (ENSGEVG00005010172) #30	MAML3 (ENSGEVG00005010075) #31	SCOC (ENSGEVG00005010044) #32	CLGN (ENSGEVG00005010013) #33	MGAT4D (ENSGEVG00005009968) #34	ELMOD2 (ENSGEVG00005009880) #35	TBC1D9 (ENSGEVG00005009367) #37	RNF150 (ENSGEVG00005009199)	ZNF330 (ENSGEVG00005009148)	IL15 (ENSGEVG00005009098)	INPP4B (ENSGEVG00005017601)	USP38 (ENSGEVG00005017374)	GAB1 (ENSGEVG00005017331)
Abingdon island giant tortoise	MODERN SPECIES	2280										SLC7A11 (ENSCABG00000003023) #16	NOCT (ENSCABG00000003016) #19	ELF2 (ENSCABG00000003013) #20	ENSCABG00000003009	MGARP (ENSCABG00000003008)	ENSCABG00000003006	NAA15 (ENSCABG00000003004) #22	RAB33B (ENSCABG00000003002) #25	SETD7 (ENSCABG00000002996) #27	MGST2 (ENSCABG00000002993) #30	MAML3 (ENSCABG00000002989) #31
Emydidae	ANCESTRAL SPECIES	1	ENSGT00940000156316	ENSGT00530000063854	ENSGT00390000014635	ENSGT00940000154718	ENSGT00940000159744 #7	ENSGT00940000158247 #8	ENSGT00730000111168 #9	ENSGT00390000006284 #10	ENSGT00940000158277 #11	ENSGT00940000156295 #15	ENSGT00940000160324 #16	ENSGT00940000155249 #19	ENSGT00940000154953 #20	ENSGT00440000037338	ENSGT01030000235247	ENSGT00950000183174.B.a #22	ENSGT00940000157090 #25	ENSGT00390000008183	ENSGT00390000004827.f #27	ENSGT00940000160288 #30	ENSGT00950000183201.b.b.a #31	ENSGT00390000008828 #32	ENSGT00950000182915.a.a.b #33	ENSGT00940000161998 #34	ENSGT00940000156589 #35	ENSGT00940000157878 #37	ENSGT00940000156171	ENSGT00390000017043	ENSGT00390000016264	ENSGT00940000157587	ENSGT00940000158403
Three-toed box turtle	MODERN SPECIES	26	MFSD8 (ENSTMTG00000013364)	ABHD18 (ENSTMTG00000013385)	LARP1B (ENSTMTG00000013430)	PGRMC2 (ENSTMTG00000013584) #7	JADE1 (ENSTMTG00000013599) #8	SCLT1 (ENSTMTG00000013669) #9	C4orf33 (ENSTMTG00000013774) #10	ENSTMTG00000013786 #10	PCDH10 (ENSTMTG00000013824) #11	PCDH18 (ENSTMTG00000013828) #15	SLC7A11 (ENSTMTG00000013837) #16	NOCT (ENSTMTG00000013858) #19	ELF2 (ENSTMTG00000013869) #20	MGARP (ENSTMTG00000013896)	ENSTMTG00000013908	NAA15 (ENSTMTG00000013916) #22	RAB33B (ENSTMTG00000013931) #25	SETD7 (ENSTMTG00000013940) #27	MGST2 (ENSTMTG00000013972) #30	MAML3 (ENSTMTG00000013990) #31	SCOC (ENSTMTG00000014037) #32	CLGN (ENSTMTG00000014052) #33	MGAT4D (ENSTMTG00000014087) #34	ELMOD2 (ENSTMTG00000014113) #35	TBC1D9 (ENSTMTG00000014126) #37	RNF150 (ENSTMTG00000014159)	ZNF330 (ENSTMTG00000014189)	INPP4B (ENSTMTG00000014224)	ENSTMTG00000014412	USP38 (ENSTMTG00000014430)	GAB1 (ENSTMTG00000014459)
painted turtle	MODERN SPECIES	15	RFC2 (ENSCPBG00000027690)	CLIP2 (ENSCPBG00000027685)	GTF2IRD1 (ENSCPBG00000027670)	GTF2I (ENSCPBG00000027663)	NCF1 (ENSCPBG00000027660)	RCC1L (ENSCPBG00000027659)	CASTOR2 (ENSCPBG00000027656)	ENSCPBG00000027651	ENSCPBG00000027650	PCDH18 (ENSCPBG00000027647) #15	SLC7A11 (ENSCPBG00000027632) #16	NOCT (ENSCPBG00000027624) #19	ELF2 (ENSCPBG00000027621) #20	ENSCPBG00000027620	ENSCPBG00000027617	NAA15 (ENSCPBG00000027608) #22	RAB33B (ENSCPBG00000027605) #25	ENSCPBG00000027603	ENSCPBG00000027600 #27	ENSCPBG00000027597 #27	MGST2 (ENSCPBG00000027595) #30	MAML3 (ENSCPBG00000027593) #31	SCOC (ENSCPBG00000027587) #32	CLGN (ENSCPBG00000027583) #33	MGAT4D (ENSCPBG00000027573) #34	ELMOD2 (ENSCPBG00000027570) #35	TBC1D9 (ENSCPBG00000027565) #37	RNF150 (ENSCPBG00000027562)	ZNF330 (ENSCPBG00000027560)	IL15 (ENSCPBG00000027557)	INPP4B (ENSCPBG00000027550)
Chinese turtle	MODERN SPECIES	77																NAA15 (ENSPSIG00000006964) #22
Lepidosauria	ANCESTRAL SPECIES	9	ENSGT00390000009484	ENSGT00940000156316	ENSGT00530000063854	ENSGT00390000014635	ENSGT00940000154718	ENSGT00940000159744 #7	ENSGT00940000158247 #8	ENSGT00730000111168 #9	ENSGT00390000006284 #10	ENSGT00940000158277 #11	ENSGT00940000156295 #15	ENSGT00940000160324 #16	ENSGT00940000155249 #19	ENSGT00940000154953 #20	ENSGT01030000235247	ENSGT00950000183174.B.a #22	ENSGT00940000157090 #25	ENSGT00390000008183	ENSGT00390000004827 #27	ENSGT00940000160288 #30	ENSGT00950000183201.b.b.a #31	ENSGT00390000008828 #32	ENSGT00950000182915.a.a.b #33	ENSGT00940000161998 #34	ENSGT00940000156589 #35	ENSGT00940000157878 #37	ENSGT00940000156171	ENSGT00390000017043	ENSGT00390000016264	ENSGT00940000157587	ENSGT00940000158403
Episquamata	ANCESTRAL SPECIES	3	ENSGT00940000158736	ENSGT00940000156316	ENSGT00530000063854	ENSGT00390000014635	ENSGT00940000154718	ENSGT00940000159744 #7	ENSGT00940000158247 #8	ENSGT00730000111168 #9	ENSGT00390000006284 #10	ENSGT00940000158277 #11	ENSGT00940000156295 #15	ENSGT00940000160324 #16	ENSGT00940000155249 #19	ENSGT00940000154953 #20	ENSGT01030000235247	ENSGT00950000183174.B.a #22	ENSGT00940000157090 #25	ENSGT00390000008183	ENSGT00390000004827 #27	ENSGT00950000183201.b.b.a #31	ENSGT00390000008828 #32	ENSGT00950000182915.a.a.b #33	ENSGT00940000161998 #34	ENSGT00940000156589 #35	ENSGT00940000157878 #37	ENSGT00940000156171	ENSGT00390000017043	ENSGT00940000157587	ENSGT00940000158403	ENSGT00940000156801	ENSGT00940000156733
Laterata	ANCESTRAL SPECIES	9	ENSGT00940000158736	ENSGT00940000156316	ENSGT00530000063854	ENSGT00390000014635	ENSGT00940000154718	ENSGT00940000159744 #7	ENSGT00940000158247 #8	ENSGT00730000111168 #9	ENSGT00390000006284 #10	ENSGT00940000158277 #11	ENSGT00940000156295 #15	ENSGT00940000160324 #16	ENSGT00940000155249 #19	ENSGT00940000154953 #20	ENSGT01030000235247	ENSGT00950000183174.B.a #22	ENSGT00940000157090 #25	ENSGT00390000008183	ENSGT00390000004827 #27	ENSGT00950000183201.b.b.a #31	ENSGT00390000008828 #32	ENSGT00950000182915.a.a.b #33	ENSGT00940000161998 #34	ENSGT00940000156589 #35	ENSGT00940000157878 #37	ENSGT00940000156171	ENSGT00390000017043	ENSGT00940000157587	ENSGT00940000158403	ENSGT00940000156801	ENSGT00940000156733
Common wall lizard	MODERN SPECIES	17	PGRMC2 (ENSPMRG00000008137) #7	JADE1 (ENSPMRG00000008116) #8	SCLT1 (ENSPMRG00000008095) #9	C4orf33 (ENSPMRG00000008081) #10	ENSPMRG00000008071 #10	ENSPMRG00000008059	ENSPMRG00000008053	PCDH10 (ENSPMRG00000008036) #11	ENSPMRG00000008026	ENSPMRG00000008018	PCDH18 (ENSPMRG00000008014) #15	SLC7A11 (ENSPMRG00000008006) #16	NOCT (ENSPMRG00000007997) #19	ELF2 (ENSPMRG00000007987) #20	ENSPMRG00000007968	NAA15 (ENSPMRG00000007950) #22	RAB33B (ENSPMRG00000007939) #25	ENSPMRG00000007932	SETD7 (ENSPMRG00000007929) #27	MAML3 (ENSPMRG00000007924) #31	ENSPMRG00000007920	SCOC (ENSPMRG00000007916) #32	CLGN (ENSPMRG00000007907) #33	MGAT4D (ENSPMRG00000007884) #34	ELMOD2 (ENSPMRG00000007868) #35	TBC1D9 (ENSPMRG00000007862) #37	RNF150 (ENSPMRG00000007860)	ZNF330 (ENSPMRG00000007858)	INPP4B (ENSPMRG00000007851)	USP38 (ENSPMRG00000007836)	SMARCA5 (ENSPMRG00000007816)
Argentine black and white tegu	MODERN SPECIES	11	MFSD8 (ENSSMRG00000015563)	ABHD18 (ENSSMRG00000015564)	LARP1B (ENSSMRG00000015565)	PGRMC2 (ENSSMRG00000015589) #7	JADE1 (ENSSMRG00000015592) #8	SCLT1 (ENSSMRG00000015593) #9	C4orf33 (ENSSMRG00000015594) #10	ENSSMRG00000015595	PCDH10 (ENSSMRG00000015597) #11	ENSSMRG00000015599	ENSSMRG00000015603	PCDH18 (ENSSMRG00000015604) #15	SLC7A11 (ENSSMRG00000015609) #16	NOCT (ENSSMRG00000015612) #19	ELF2 (ENSSMRG00000015613) #20	NAA15 (ENSSMRG00000015616) #22	RAB33B (ENSSMRG00000015620) #25	ENSSMRG00000015621	SETD7 (ENSSMRG00000015624) #27	ENSSMRG00000015626 #31
Toxicofera	ANCESTRAL SPECIES	12	ENSGT00940000156316	ENSGT00530000063854	ENSGT00390000014635	ENSGT00940000154718	ENSGT00940000159744 #7	ENSGT00940000158247 #8	ENSGT00730000111168 #9	ENSGT00390000006284 #10	ENSGT01030000234904	ENSGT00940000158277 #11	ENSGT00940000156295 #15	ENSGT00940000160324 #16	ENSGT00940000155249 #19	ENSGT00940000154953 #20	ENSGT01030000235247	ENSGT00950000183174.B.a #22	ENSGT00940000157090 #25	ENSGT00390000008183	ENSGT00390000004827 #27	ENSGT00950000183201.b.b.a #31	ENSGT00390000008828 #32	ENSGT00950000182915.a.a.b #33	ENSGT00940000161998 #34	ENSGT00940000156589 #35	ENSGT00940000157878 #37	ENSGT00940000156171	ENSGT00390000017043	ENSGT00940000157587	ENSGT00940000158403	ENSGT00940000156801	ENSGT00940000156733
Elapidae	ANCESTRAL SPECIES	11	ENSGT00940000158736	ENSGT00940000156316	ENSGT00530000063854	ENSGT00390000014635	ENSGT00940000154718	ENSGT00940000159744 #7	ENSGT00940000158247 #8	ENSGT00730000111168 #9	ENSGT00390000006284 #10	ENSGT00940000158277 #11	ENSGT00940000156295 #15	ENSGT00940000160324 #16	ENSGT00940000155249 #19	ENSGT00940000154953 #20	ENSGT01030000235247	ENSGT00950000183174.B.a #22	ENSGT00940000157090 #25	ENSGT00390000008183	ENSGT00390000004827 #27	ENSGT00950000183201.b.b.a #31	ENSGT00390000008828 #32	ENSGT00950000182915.a.a.b #33	ENSGT00940000161998 #34	ENSGT00940000156589 #35	ENSGT00940000157878 #37	ENSGT00940000156171	ENSGT00390000017043	ENSGT00940000157587	ENSGT00940000158403	ENSGT00940000156801	ENSGT00940000156733
Elapidae_a	ANCESTRAL SPECIES	13	ENSGT00940000158736.g	ENSGT00940000156316	ENSGT00530000063854	ENSGT00390000014635	ENSGT00940000154718.a	ENSGT00940000159744 #7	ENSGT00940000158247 #8	ENSGT00730000111168 #9	ENSGT00390000006284 #10	ENSGT00940000158277 #11	ENSGT00940000156295 #15	ENSGT00940000160324 #16	ENSGT00940000155249 #19	ENSGT00940000154953 #20	ENSGT01030000235247	ENSGT00950000183174.B.a #22	ENSGT00940000157090 #25	ENSGT00390000008183	ENSGT00390000004827 #27	ENSGT00950000183201.b.b.a #31	ENSGT00390000008828 #32	ENSGT00950000182915.a.a.b #33	ENSGT00940000161998 #34	ENSGT00940000156589 #35	ENSGT00940000157878 #37	ENSGT00940000156171	ENSGT00390000017043	ENSGT00940000157587	ENSGT00940000158403	ENSGT00940000156801	ENSGT00940000156733
Acanthophiinae	ANCESTRAL SPECIES	4	ENSGT00940000158736.g	ENSGT00940000156316	ENSGT00530000063854	ENSGT00390000014635	ENSGT00940000154718.a	ENSGT00940000159744 #7	ENSGT00940000158247 #8	ENSGT00730000111168 #9	ENSGT00390000006284 #10	ENSGT00940000158277 #11	ENSGT00940000156295 #15	ENSGT00940000160324 #16	ENSGT00940000155249 #19	ENSGT00940000154953 #20	ENSGT01030000235247	ENSGT00950000183174.B.a #22	ENSGT00940000157090 #25	ENSGT00390000008183	ENSGT00390000004827 #27	ENSGT00950000183201.b.b.a #31	ENSGT00390000008828 #32	ENSGT00950000182915.a.a.b #33	ENSGT00940000161998 #34	ENSGT00940000156589 #35	ENSGT00940000157878 #37	ENSGT00940000156171	ENSGT00390000017043	ENSGT00940000157587	ENSGT00940000158403	ENSGT00940000156801	ENSGT00940000156733
Mainland tiger snake	MODERN SPECIES	24								ENSNSUG00000006099	PCDH10 (ENSNSUG00000006097) #11	ENSNSUG00000006093	PCDH18 (ENSNSUG00000006091) #15	SLC7A11 (ENSNSUG00000005914) #16	NOCT (ENSNSUG00000005912) #19	ELF2 (ENSNSUG00000005910) #20	ENSNSUG00000005909	NAA15 (ENSNSUG00000005907) #22	RAB33B (ENSNSUG00000005905) #25	SETD7 (ENSNSUG00000005904) #27	ENSNSUG00000005903 #31	SCOC (ENSNSUG00000005902) #32	CLGN (ENSNSUG00000005899) #33	MGAT4D (ENSNSUG00000005895) #34	ELMOD2 (ENSNSUG00000005870) #35	TBC1D9 (ENSNSUG00000005783) #37	RNF150 (ENSNSUG00000005778)	ZNF330 (ENSNSUG00000005776)	INPP4B (ENSNSUG00000005430)	ENSNSUG00000005428	USP38 (ENSNSUG00000005347)	GAB1 (ENSNSUG00000005191)	SMARCA5 (ENSNSUG00000005138)
Eastern brown snake	MODERN SPECIES	9	MFSD8 (ENSPTXG00000009842)	ABHD18 (ENSPTXG00000009843)	LARP1B (ENSPTXG00000009844)	PGRMC2 (ENSPTXG00000009846) #7	JADE1 (ENSPTXG00000009847) #8	SCLT1 (ENSPTXG00000009850) #9	C4orf33 (ENSPTXG00000009860) #10	ENSPTXG00000009861	PCDH10 (ENSPTXG00000009862) #11	ENSPTXG00000009863	PCDH18 (ENSPTXG00000009865) #15	SLC7A11 (ENSPTXG00000009866) #16	NOCT (ENSPTXG00000009867) #19	ELF2 (ENSPTXG00000009869) #20	ENSPTXG00000009870	NAA15 (ENSPTXG00000009872) #22	RAB33B (ENSPTXG00000009873) #25	ENSPTXG00000009874	SETD7 (ENSPTXG00000009875) #27	MAML3 (ENSPTXG00000009876) #31	SCOC (ENSPTXG00000009878) #32	CLGN (ENSPTXG00000009879) #33	MGAT4D (ENSPTXG00000009881) #34	ELMOD2 (ENSPTXG00000009884) #35	TBC1D9 (ENSPTXG00000009886) #37	RNF150 (ENSPTXG00000009889)	ZNF330 (ENSPTXG00000009891)	INPP4B (ENSPTXG00000009897)	USP38 (ENSPTXG00000010129)	GAB1 (ENSPTXG00000010131)	SMARCA5 (ENSPTXG00000010134)
Blue-lipped sea krait	MODERN SPECIES	1535															ENSLLTG00000002310	NAA15 (ENSLLTG00000002315) #22	RAB33B (ENSLLTG00000002322) #25	ENSLLTG00000002328
Indian cobra	MODERN SPECIES	3	MFSD8 (ENSNNAG00000003355)	ABHD18 (ENSNNAG00000003333)	PGRMC2 (ENSNNAG00000003323) #7	LARP1B (ENSNNAG00000003244)	JADE1 (ENSNNAG00000003190) #8	SCLT1 (ENSNNAG00000003127) #9	C4orf33 (ENSNNAG00000003112) #10	ENSNNAG00000003102	PCDH10 (ENSNNAG00000003086) #11	ENSNNAG00000003073	ENSNNAG00000003067 #15	SLC7A11 (ENSNNAG00000003051) #16	NOCT (ENSNNAG00000003044) #19	ELF2 (ENSNNAG00000003031) #20	ENSNNAG00000003022	NAA15 (ENSNNAG00000003008) #22	RAB33B (ENSNNAG00000012837) #25	SETD7 (ENSNNAG00000012814) #27	ENSNNAG00000012782 #31	ENSNNAG00000012770 #31	SCOC (ENSNNAG00000012713) #32	CLGN (ENSNNAG00000012667) #33	MGAT4D (ENSNNAG00000012606) #34	ELMOD2 (ENSNNAG00000012545) #35	TBC1D9 (ENSNNAG00000012434) #37	RNF150 (ENSNNAG00000012408)	ZNF330 (ENSNNAG00000012380)	INPP4B (ENSNNAG00000012068)	USP38 (ENSNNAG00000011989)	GAB1 (ENSNNAG00000011879)	SMARCA5 (ENSNNAG00000011601)
Lizard	MODERN SPECIES	4	ENSACAG00000036587	ENSACAG00000020975	ENSACAG00000045504	ENSACAG00000013372	ENSACAG00000036556	ENSACAG00000044332	ENSACAG00000036682	ENSACAG00000045211	PCDH18 (ENSACAG00000013347) #15	ENSACAG00000036169	ENSACAG00000042372	SLC7A11 (ENSACAG00000001704) #16	NOCT (ENSACAG00000001961) #19	ELF2 (ENSACAG00000001979) #20	ENSACAG00000036630	NAA15 (ENSACAG00000002092) #22	RAB33B (ENSACAG00000002227) #25	ENSACAG00000028951	SETD7 (ENSACAG00000002249) #27	ENSACAG00000041429	ENSACAG00000043280	MAML3 (ENSACAG00000002268) #31	SCOC (ENSACAG00000040074) #32	CLGN (ENSACAG00000002293) #33	MGAT4D (ENSACAG00000002396) #34	ENSACAG00000043952	ENSACAG00000036219	ELMOD2 (ENSACAG00000037737) #35	TBC1D9 (ENSACAG00000002504) #37	RNF150 (ENSACAG00000002648)	ZNF330 (ENSACAG00000002683)
tuatara	MODERN SPECIES	22												PCDH18 (ENSSPUG00000008196) #15	SLC7A11 (ENSSPUG00000008169) #16	NOCT (ENSSPUG00000008160) #19	ELF2 (ENSSPUG00000008145) #20	NAA15 (ENSSPUG00000008128) #22	RAB33B (ENSSPUG00000008120) #25	ENSSPUG00000008102	SETD7 (ENSSPUG00000008084) #27	MGST2 (ENSSPUG00000008078) #30	ENSSPUG00000008070 #31	SCOC (ENSSPUG00000008058) #32	CLGN (ENSSPUG00000008019) #33	MGAT4D (ENSSPUG00000007992) #34	ELMOD2 (ENSSPUG00000007981) #35	TBC1D9 (ENSSPUG00000007929) #37	RNF150 (ENSSPUG00000007877)	ENSSPUG00000007861	ZNF330 (ENSSPUG00000007853)	IL15 (ENSSPUG00000007841)	INPP4B (ENSSPUG00000007792)
Anura	ANCESTRAL SPECIES	2												ENSGT00940000155249 #19	ENSGT00940000154953 #20	ENSGT00440000037338	ENSGT00390000002565 #21	ENSGT00950000183174.B.a #22	ENSGT00390000002932	ENSGT00940000157090 #25	ENSGT00390000008183	ENSGT00390000004827 #27	ENSGT00940000160288.a #30	ENSGT00940000160288.b #30	ENSGT00950000183201.b.b.a #31	ENSGT00390000008828 #32	ENSGT00950000182915.a.a.b #33	ENSGT00940000161998 #34	ENSGT00940000156589 #35	ENSGT00940000160382 #36	ENSGT00940000157878 #37	ENSGT00940000156171	ENSGT00390000017043
Leishan spiny toad	DUPLICATION
Leishan spiny toad	MODERN SPECIES		CCNA2 (ENSLLEG00000000305)	BBS7 (ENSLLEG00000000232)	ENSLLEG00000000202	ENSLLEG00000003774	TDO2 (ENSLLEG00000003763)	CTSO (ENSLLEG00000003741)	ENSLLEG00000003731	NOCT (ENSLLEG00000003717) #19	ELF2 (ENSLLEG00000003697) #20	ENSLLEG00000003690	ENSLLEG00000003685	ENSLLEG00000003679	ENSLLEG00000003672	ENSLLEG00000003666	ENSLLEG00000003659	ENSLLEG00000003629 #22	ENSLLEG00000003597	ENSLLEG00000003588	RAB33B (ENSLLEG00000003582) #25	SETD7 (ENSLLEG00000003543) #27	ENSLLEG00000003522 #30	ENSLLEG00000003514 #30	MAML3 (ENSLLEG00000003498) #31	ENSLLEG00000003481	SCOC (ENSLLEG00000003472) #32	CLGN (ENSLLEG00000003455) #33	MGAT4D (ENSLLEG00000003366) #34	ELMOD2 (ENSLLEG00000003353) #35	UCP1 (ENSLLEG00000003339) #36	ENSLLEG00000003334	ENSLLEG00000003329
Leishan spiny toad	MODERN SPECIES		ENSLLEG00000003910	ENSLLEG00000003974	ENSLLEG00000003980	ENSLLEG00000003988	ZBTB7A (ENSLLEG00000003998)	ENSLLEG00000004002	ENSLLEG00000004022	ENSLLEG00000004042	LSM4 (ENSLLEG00000004045)	ENSLLEG00000004051	ENSLLEG00000004060	ENSLLEG00000004068	ENSLLEG00000004075	ENSLLEG00000004080	ENSLLEG00000004084	ENSLLEG00000004087 #22	ATCAY (ENSLLEG00000004102)	ENSLLEG00000004129	ENSLLEG00000004130	MRPL54 (ENSLLEG00000004133)	ENSLLEG00000004137	APBA3 (ENSLLEG00000005030)	TJP3 (ENSLLEG00000005069)	PIP5K1C (ENSLLEG00000005163)	ENSLLEG00000005325	ENSLLEG00000005335	ENSLLEG00000005389	TBXA2R (ENSLLEG00000005403)	ENSLLEG00000005419	ENSLLEG00000005448	GIPC3 (ENSLLEG00000005535)
Frog	MODERN SPECIES		ENSXETG00000041504	ENSXETG00000044905	ENSXETG00000043217	ENSXETG00000048632	ENSXETG00000042071	ENSXETG00000047955	pcdh10 (ENSXETG00000003663) #11	ENSXETG00000041833	pcdh18 (ENSXETG00000011158) #15	ENSXETG00000042656	slc7a11 (ENSXETG00000003335) #16	mgarp (ENSXETG00000003337)	elf2 (ENSXETG00000016896) #20	noct (ENSXETG00000016899) #19	NDUFC1 (ENSXETG00000031514) #21	naa15 (ENSXETG00000016900) #22	XB5866417 [provisional] (ENSXETG00000016901)	rab33b (ENSXETG00000047550) #25	XB5734924 [provisional] (ENSXETG00000024517)	setd7 (ENSXETG00000016939) #27	ENSXETG00000030456 #30	mgst2 (ENSXETG00000036671) #30	maml3 (ENSXETG00000016965) #31	ENSXETG00000042487	scoc (ENSXETG00000040787) #32	clgn (ENSXETG00000014911) #33	mgat4d (ENSXETG00000014915) #34	elmod2 (ENSXETG00000014925) #35	ucp1 (ENSXETG00000014927) #36	tbc1d9 (ENSXETG00000014933) #37	rnf150 (ENSXETG00000040133)
Coelacanth	MODERN SPECIES	543													NOCT (ENSLACG00000015874) #19	ELF2 (ENSLACG00000015111) #20	MGARP (ENSLACG00000014636)	NAA15 (ENSLACG00000013953) #22	mlsl (ENSLACG00000013696)	RAB33B (ENSLACG00000013571) #25	zgc:113425 (ENSLACG00000013312)	SETD7 (ENSLACG00000012870) #27	MGST2 (ENSLACG00000012359) #30	MAML3 (ENSLACG00000010639) #31	ENSLACG00000007654 ##31	SCOC (ENSLACG00000004488) #32	CLGN (ENSLACG00000002424) #33
Actinopterygii	DUPLICATION
Actinopterygii	ANCESTRAL SPECIES	20	ENSGT00940000154718	ENSGT00940000159744 #7	ENSGT00940000166228	ENSGT00940000158247 #8	ENSGT00730000111168 #9	ENSGT00390000006284 #10	ENSGT01030000234904	ENSGT00940000158277 #11	ENSGT00940000156295 #15	ENSGT00940000160324 #16	ENSGT00940000155249 #19	ENSGT00940000154953.b #20	ENSGT00440000037338	ENSGT01030000235247	ENSGT00390000002565 #21	ENSGT00950000183174.B.a.e #22	ENSGT00940000154953.a #20	ENSGT00950000183174.B.a.f #22	ENSGT00390000002932	ENSGT00940000157090 #25	ENSGT00390000008183	ENSGT00390000004827 #27	ENSGT00940000160288 #30	ENSGT00950000183201.b.a.b ##31	ENSGT00390000008828 #32	ENSGT00950000182915.a.a.b #33	ENSGT00940000156526.b	ENSGT00940000160151	ENSGT00390000015863	ENSGT00390000002245	ENSGT00940000159741
Neopterygii	ANCESTRAL SPECIES	35	ENSGT00940000154718	ENSGT00940000159744 #7	ENSGT00940000166228	ENSGT00940000158247 #8	ENSGT00730000111168 #9	ENSGT00390000006284 #10	ENSGT01030000234904	ENSGT00940000158277 #11	ENSGT00940000156295 #15	ENSGT00940000166427	ENSGT00940000155249 #19	ENSGT00940000154953.b #20	ENSGT00440000037338	ENSGT01030000235247	ENSGT00390000002565 #21	ENSGT00950000183174.B.a.e #22	ENSGT00940000154953.a #20	ENSGT00950000183174.B.a.f #22	ENSGT00390000002932	ENSGT00940000157090 #25	ENSGT00390000008183	ENSGT00390000004827 #27	ENSGT00940000160288 #30	ENSGT00950000183201.b.a.b ##31	ENSGT00390000008828 #32	ENSGT00950000182915.a.a.b #33	ENSGT00940000156526.b	ENSGT00940000160151	ENSGT00390000015863	ENSGT00390000002245	ENSGT00940000164407.a.a
Osteoglossocephalai	ANCESTRAL SPECIES	164	ENSGT00940000158062	ENSGT00940000156892.b	ENSGT00940000154617.A.a.a	ENSGT00730000111168 #9	ENSGT00390000006284 #10	ENSGT01030000234904	ENSGT00940000158277.a #11	ENSGT00940000166390	ENSGT00940000158277.b #11	ENSGT00940000156295 #15	ENSGT00940000166427	ENSGT00940000155249 #19	ENSGT00940000154953.b #20	ENSGT00990000203987	ENSGT00390000002565 #21	ENSGT00950000183174.B.a.e #22	ENSGT00390000002932	ENSGT00940000157090.h #25	ENSGT00940000154953.a #20	ENSGT00440000037338	ENSGT00950000183174.B.a.f #22	ENSGT00940000157090.g #25	ENSGT00390000008183	ENSGT00390000004827 #27	ENSGT00940000160288 #30	ENSGT00950000183201.b.a.b ##31	ENSGT00390000008828 #32	ENSGT00940000156526.b
Osteoglossiformes	ANCESTRAL SPECIES	378												ENSGT00940000155249.f #19	ENSGT00940000154953.b.b #20	ENSGT01030000235247	ENSGT00390000002565 #21	ENSGT00950000183174.B.a.e #22	ENSGT00390000002932	ENSGT00940000157090.h #25	ENSGT00390000008183	ENSGT00390000004827 #27	ENSGT00940000160288 #30	ENSGT00950000183201.b.a.b.b ##31	ENSGT00390000008828.ib #32	ENSGT00940000156526.b
Asian bonytongue	DUPLICATION
Asian bonytongue	MODERN SPECIES	7	RNF38 (ENSSFOG00015030586)	ENSSFOG00015024063	CHRNA6 (ENSSFOG00015008527)	chrnb3a (ENSSFOG00015008478)	ENSSFOG00015008439	DNAH6 (ENSSFOG00015008240)	smim19 (ENSSFOG00015032087)	SCLT1 (ENSSFOG00015008169) #9	zgc:77739 (ENSSFOG00015029461) #10	ENSSFOG00015024055	pcdh10a (ENSSFOG00015024054) #11	PCDH18 (ENSSFOG00015019917) #15	NOCT (ENSSFOG00015019938) #19	elf2b (ENSSFOG00015019967) #20	ENSSFOG00015020037	naa15b (ENSSFOG00015020061) #22	rab33ba (ENSSFOG00015028583) #25	ENSSFOG00015026701 ##31	ENSSFOG00015020120 ##31	scoca (ENSSFOG00015032096) #32	clgn (ENSSFOG00015020145) #33	grk4 (ENSSFOG00015020186)	htt (ENSSFOG00015020239)	rgs12b (ENSSFOG00015020342)	ENSSFOG00015020376	DOK7 (ENSSFOG00015020390)	lrpap1 (ENSSFOG00015020423)	adra2c (ENSSFOG00015020444)	hmx1 (ENSSFOG00015000124)	ENSSFOG00015000153	CPZ (ENSSFOG00015000173)
Asian bonytongue	MODERN SPECIES	20	zgc:195282 (ENSSFOG00015024065)	ENSSFOG00015024064	ENSSFOG00015008545	chrna6 (ENSSFOG00015024062)	chrnb3b (ENSSFOG00015024059)	ENSSFOG00015024058	si:ch211-175m2.5 (ENSSFOG00015024057)	pcdh10b (ENSSFOG00015032460) #11	PCDH18 (ENSSFOG00015024052) #15	ENSSFOG00015024051	ENSSFOG00015024049	ENSSFOG00015024964	NOCT (ENSSFOG00015027612) #19	elf2b (ENSSFOG00015024045) #20	ENSSFOG00015027958	NAA15 (ENSSFOG00015024041) #22	mlsl (ENSSFOG00015024040)	RAB33B (ENSSFOG00015024034) #25	setd7 (ENSSFOG00015024029) #27	mgst2 (ENSSFOG00015028269) #30	ENSSFOG00015024027 ##31	scocb (ENSSFOG00015024025) #32	ENSSFOG00015024023	ENSSFOG00015032283	ENSSFOG00015024022	ENSSFOG00015024010	ppfibp1b (ENSSFOG00015024002)	ITIH5 (ENSSFOG00015023999)	itih2 (ENSSFOG00015023997)	kin (ENSSFOG00015032527)	atp5f1c (ENSSFOG00015023991)
P. kingsleyae	DUPLICATION
P. kingsleyae	MODERN SPECIES	25													NOCT (ENSPKIG00000022066) #19	elf2b (ENSPKIG00000022104) #20	NDUFC1 (ENSPKIG00000022143) #21	naa15b (ENSPKIG00000025693) #22	rab33ba (ENSPKIG00000025682) #25	ENSPKIG00000025679 ##31	scoca (ENSPKIG00000025676) #32	clgn (ENSPKIG00000000013) #33	grk4 (ENSPKIG00000000049)	htt (ENSPKIG00000000098)	rgs12b (ENSPKIG00000000155)	DOK7 (ENSPKIG00000000227)	lrpap1 (ENSPKIG00000000278)	adra2c (ENSPKIG00000000297)	ENSPKIG00000000307	CPZ (ENSPKIG00000000318)	ENSPKIG00000000345	htra3a (ENSPKIG00000000381)	pi4k2b (ENSPKIG00000000425)
P. kingsleyae	MODERN SPECIES	167	ENSPKIG00000013708	ENSPKIG00000013689	chrna6 (ENSPKIG00000013667)	chrnb3b (ENSPKIG00000013615)	ENSPKIG00000013563	si:ch211-175m2.5 (ENSPKIG00000013520)	ENSPKIG00000013501	pcdh10b (ENSPKIG00000013480) #11	ENSPKIG00000013461	PCDH18 (ENSPKIG00000013435) #15	ENSPKIG00000013390	NOCT (ENSPKIG00000013368) #19	elf2b (ENSPKIG00000013350) #20	ENSPKIG00000013337	ENSPKIG00000013320	NAA15 (ENSPKIG00000013186) #22	mlsl (ENSPKIG00000013109)	RAB33B (ENSPKIG00000013084) #25	zgc:113425 (ENSPKIG00000013062)	setd7 (ENSPKIG00000013022) #27	mgst2 (ENSPKIG00000012999) #30	ENSPKIG00000012984	ENSPKIG00000012968 ##31	SCOC (ENSPKIG00000012952) #32	zgc:154054 (ENSPKIG00000012856)	ENSPKIG00000012825
Clupeocephala	ANCESTRAL SPECIES	115												ENSGT00950000182915.a.a.b #33	ENSGT00390000008828.fb.b #32	ENSGT00950000183201.b.a.b ##31	ENSGT00870000137155	ENSGT00950000183174.B.a.e #22	ENSGT00940000157090.h #25	ENSGT00940000154953.b #20	ENSGT00940000155249.g #19	ENSGT00940000156295.g #15	ENSGT00950000183174.B.a.f #22	ENSGT00440000037338	ENSGT00940000154953.a #20	ENSGT00940000155249.h #19	ENSGT00940000166427	ENSGT00940000156295.h #15	ENSGT00940000158277.b #11	ENSGT00390000006284 #10	ENSGT00730000111168 #9	ENSGT00940000154617.A.a.a	ENSGT00940000156892.b
Otomorpha	ANCESTRAL SPECIES	341												ENSGT00950000182915.a.a.b #33	ENSGT00390000008828.fb.b #32	ENSGT00950000183201.b.a.b ##31	ENSGT00870000137155	ENSGT00950000183174.B.a.e #22	ENSGT00940000157090.h #25	ENSGT00940000154953.b #20	ENSGT00950000183174.B.a.f #22	ENSGT00440000037338	ENSGT00940000154953.a #20	ENSGT00940000155249.h #19	ENSGT00940000166427	ENSGT00940000156295.h #15	ENSGT00940000158277.a #11	ENSGT01030000234904	ENSGT00940000155249.g #19	ENSGT00940000156295.g #15	ENSGT00940000158277.b #11	ENSGT00390000006284 #10	ENSGT00730000111168 #9
Clupeiformes	ANCESTRAL SPECIES	22	ENSGT00390000009223	ENSGT00940000156167.b	ENSGT01030000234566.e.b.a.a.a.a	ENSGT00940000153676.a	ENSGT00410000025556.a.a.a.b.a	ENSGT00940000157580.a.b	ENSGT00850000132319.a.a.b	ENSGT00530000063255.B	ENSGT00390000006192	ENSGT00390000013015	ENSGT00530000063669.a	ENSGT00950000182915.a.a.b #33	ENSGT00390000008828.fb.b #32	ENSGT00950000183201.b.a.b ##31	ENSGT00870000137155	ENSGT00950000183174.B.a.e #22	ENSGT00940000157090.h #25	ENSGT00940000154953.b #20	ENSGT00940000155249.g #19	ENSGT00940000156295.g #15	ENSGT00940000158277.b #11	ENSGT00390000006284 #10	ENSGT00730000111168 #9	ENSGT00940000160151	ENSGT00390000015863	ENSGT00940000164407.a.a	ENSGT00390000015386.a	ENSGT00390000004855	ENSGT00940000161707.a.a	ENSGT00940000162580.b.b	ENSGT00940000165038.a
Atlantic herring	MODERN SPECIES	14	vegfc (ENSCHAG00000006654)	TENM3 (ENSCHAG00000006766)	dctd (ENSCHAG00000010185)	ENSCHAG00000010259	ENSCHAG00000010243	clockb (ENSCHAG00000010310)	kitb (ENSCHAG00000012047)	clrn2 (ENSCHAG00000012507)	lap3 (ENSCHAG00000012553)	med28 (ENSCHAG00000013382)	fam184b (ENSCHAG00000013410)	clgn (ENSCHAG00000013427) #33	scoca (ENSCHAG00000013928) #32	ENSCHAG00000013941 ##31	ENSCHAG00000014006	naa15b (ENSCHAG00000014034) #22	RAB33B (ENSCHAG00000015145) #25	elf2b (ENSCHAG00000015150) #20	NOCT (ENSCHAG00000015160) #19	pcdh18a (ENSCHAG00000015168) #15	pcdh10a (ENSCHAG00000015186) #11	zgc:77739 (ENSCHAG00000015252) #10	SCLT1 (ENSCHAG00000015265) #9	grk4 (ENSCHAG00000015343)	htt (ENSCHAG00000017705)	rgs12b (ENSCHAG00000019293)	DOK7 (ENSCHAG00000019357)	lrpap1 (ENSCHAG00000019384)	ENSCHAG00000019922	adra2c (ENSCHAG00000019939)	hmx1 (ENSCHAG00000019947)
Denticle herring	MODERN SPECIES	14	vegfc (ENSDCDG00000015874)	TENM3 (ENSDCDG00000016011)	ENSDCDG00000019544	dctd (ENSDCDG00000019547)	WWC2 (ENSDCDG00000019561)	clockb (ENSDCDG00000019632)	kitb (ENSDCDG00000020603)	clrn2 (ENSDCDG00000021002)	lap3 (ENSDCDG00000021005)	med28 (ENSDCDG00000021128)	ENSDCDG00000021130	fam184b (ENSDCDG00000021137)	ENSDCDG00000021161	scoca (ENSDCDG00000021836) #32	ENSDCDG00000021842 ##31	naa15b (ENSDCDG00000021850) #22	RAB33B (ENSDCDG00000022054) #25	elf2b (ENSDCDG00000022060) #20	NOCT (ENSDCDG00000022062) #19	pcdh18a (ENSDCDG00000022064) #15	pcdh10a (ENSDCDG00000022066) #11	zgc:77739 (ENSDCDG00000022069) #10	SCLT1 (ENSDCDG00000022079) #9	grk4 (ENSDCDG00000022320)	htt (ENSDCDG00000024621)	rgs12b (ENSDCDG00000027950)	DOK7 (ENSDCDG00000027960)	lrpap1 (ENSDCDG00000027965)	adra2c (ENSDCDG00000027977)	ENSDCDG00000027980	hmx4 (ENSDCDG00000027983)
Otophysi	ANCESTRAL SPECIES	139									ENSGT00940000157807.g.b	ENSGT00940000162502.a	ENSGT00940000154810.jb	ENSGT00940000154259.b.b	ENSGT00950000183201.b.a.b ##31	ENSGT00390000008828.fb.b #32	ENSGT00950000182915.a.a.b #33	ENSGT00950000183174.B.a.e #22	ENSGT00940000157090.h #25	ENSGT00940000159570.a	ENSGT00950000183001.b.b.a	ENSGT00940000156391.d	ENSGT00940000165038.a	ENSGT00940000162580.b.b	ENSGT00940000161707.a.a	ENSGT00390000004855	ENSGT00390000015386.a	ENSGT00940000164407.a.a	ENSGT00390000015863	ENSGT01100000263491.a.b.a.a.a.b.b.b.a.a	ENSGT00950000183012.A.b	ENSGT00510000052942	ENSGT00390000001610.c.b
Characiphysae	ANCESTRAL SPECIES	9	ENSGT00390000004446	ENSGT00940000157370.b	ENSGT00940000157714	ENSGT00940000159984	ENSGT00940000159660.j	ENSGT00940000158059.g	ENSGT00940000155140.s	ENSGT01100000263483.E.b.a.c.b	ENSGT00940000157807.g.b	ENSGT00940000162502.a	ENSGT00940000154810.jb	ENSGT00940000154259.b.b	ENSGT00950000183201.b.a.b ##31	ENSGT00390000008828.fb.b #32	ENSGT00950000182915.a.a.b #33	ENSGT00950000183174.B.a.e #22	ENSGT00940000157090.h #25	ENSGT00940000159570.a	ENSGT00950000183001.b.b.a	ENSGT00940000156391.d	ENSGT00940000165038.a	ENSGT00940000162580.b.b	ENSGT00940000161707.a.a	ENSGT00390000004855	ENSGT00390000015386.a	ENSGT00940000164407.a.a	ENSGT00390000015863	ENSGT00390000017284.a.b.d	ENSGT00940000155980.B	ENSGT00940000169481	ENSGT01100000263491.a.b.a.a.a.b.b.b.a.a
Channel catfish	MODERN SPECIES	22	ENSIPUG00000009010	CASP6 (ENSIPUG00000009042)	ENSIPUG00000009291	ENSIPUG00000009313	ENSIPUG00000009321	ENSIPUG00000009331	ENSIPUG00000009345	ENSIPUG00000009403	ENSIPUG00000009411	faah2a (ENSIPUG00000009449)	PTGR1 (ENSIPUG00000009465)	zgc:56493 (ENSIPUG00000009504)	maml3 (ENSIPUG00000009517) ##31	scoca (ENSIPUG00000009524) #32	clgn (ENSIPUG00000009536) #33	NAA15 (ENSIPUG00000009655) #22	ENSIPUG00000009784 #25	htra3a (ENSIPUG00000009826)	CPZ (ENSIPUG00000009872)	GPR78 (ENSIPUG00000009901)	HMX2 (ENSIPUG00000009916)	ENSIPUG00000009921	adra2c (ENSIPUG00000009930)	lrpap1 (ENSIPUG00000009951)	dok7 (ENSIPUG00000009960)	ENSIPUG00000009998	ENSIPUG00000010020	rgs12 (ENSIPUG00000010028)	htt (ENSIPUG00000013293)	paip2b (ENSIPUG00000013625)	ENSIPUG00000013631
Characiphysae_b	ANCESTRAL SPECIES	76	ENSGT00940000157370.b	ENSGT00940000157714	ENSGT00940000159984	ENSGT00940000159660.j	ENSGT00940000158059.g	ENSGT00940000155140.s	ENSGT01100000263483.E.b.a.c.b	ENSGT00940000157807.g.b	ENSGT00940000162502.a	ENSGT00940000154810.jb	ENSGT00940000154259.b.b	ENSGT01030000234601.r.a.c	ENSGT00950000183201.b.a.b ##31	ENSGT00390000008828.fb.b #32	ENSGT00950000182915.a.a.b #33	ENSGT00950000183174.B.a.e #22	ENSGT00940000157090.h #25	ENSGT00940000159570.a	ENSGT01100000263541.a.a.b.a.a.b	ENSGT01100000263483.F.a.eb	ENSGT00950000183001.b.b.a	ENSGT00940000156391.d	ENSGT00940000165038.a	ENSGT00940000162580.b.b	ENSGT00940000161707.a.a
Characoidei	ANCESTRAL SPECIES	236								ENSGT00940000157807.g.b	ENSGT00940000162502.a	ENSGT00940000154810.jb	ENSGT00940000154259.b.b	ENSGT01030000234601.r.a.c.a.b	ENSGT00950000183201.b.a.b ##31	ENSGT00390000008828.fb.b #32	ENSGT00950000182915.a.a.b #33	ENSGT00950000183174.B.a.e #22	ENSGT00940000157090.h #25	ENSGT00940000159570.a	ENSGT01100000263541.a.a.b.a.a.b	ENSGT01100000263483.F.a.eb	ENSGT00950000183001.b.b.a	ENSGT00940000156391.d	ENSGT00940000165038.a	ENSGT00940000162580.b.a	ENSGT00940000161707.a.a
Red-bellied piranha	MODERN SPECIES	165	ENSPNAG00000014522	ndufs8a (ENSPNAG00000014504)	stx3a (ENSPNAG00000014482)	kdm2aa (ENSPNAG00000014432)	TCIRG1 (ENSPNAG00000014408)	ENSPNAG00000014384	ENSPNAG00000014369	ENSPNAG00000014355	ENSPNAG00000014348	TESK1 (ENSPNAG00000014338)	faah2a (ENSPNAG00000014325)	ENSPNAG00000014284	ENSPNAG00000014273 ##31	scoca (ENSPNAG00000014265) #32	clgn (ENSPNAG00000003056) #33	naa15b (ENSPNAG00000014200) #22	RAB33B (ENSPNAG00000014146) #25	htra3a (ENSPNAG00000014134)	zgc:153642 (ENSPNAG00000014086)	ENSPNAG00000014076	zgc:153642 (ENSPNAG00000003012)	ENSPNAG00000014035	GPR78 (ENSPNAG00000014031)	CPZ (ENSPNAG00000014013)	hmx4 (ENSPNAG00000013967)	HMX1 (ENSPNAG00000013963)	adra2c (ENSPNAG00000013950)	cdo1 (ENSPNAG00000002994)	tmed7 (ENSPNAG00000002990)	fem1c (ENSPNAG00000013912)	CCDC112 (ENSPNAG00000002985)
Mexicana tetra	MODERN SPECIES	17	ENSAMXG00000005499	ENSAMXG00000028341	TESK1 (ENSAMXG00000032728)	faah2a (ENSAMXG00000005461)	PTGR1 (ENSAMXG00000032623)	zgc:56493 (ENSAMXG00000031017)	ENSAMXG00000031908	ENSAMXG00000041408	ENSAMXG00000031340	ENSAMXG00000038050	ENSAMXG00000033734	ENSAMXG00000040199	ENSAMXG00000005387 ##31	scoca (ENSAMXG00000043358) #32	clgn (ENSAMXG00000005367) #33	naa15b (ENSAMXG00000005342) #22	ENSAMXG00000037428 #25	htra3a (ENSAMXG00000005303)	ENSAMXG00000043607	ENSAMXG00000040229	lrpap1 (ENSAMXG00000031077)	ENSAMXG00000033089	rgs12b (ENSAMXG00000010300)	htt (ENSAMXG00000010292)	ENSAMXG00000037213	paip2b (ENSAMXG00000038609)	ENSAMXG00000010283	ENSAMXG00000030152	tmem176 (ENSAMXG00000010274)	vps37c (ENSAMXG00000038699)	ENSAMXG00000034110
Electric eel	MODERN SPECIES	636													ENSEEEG00000015117 ##31	scoca (ENSEEEG00000015116) #32	clgn (ENSEEEG00000015065) #33	naa15b (ENSEEEG00000014084) #22	ENSEEEG00000014048 #25	htra3a (ENSEEEG00000013976)	zgc:153642 (ENSEEEG00000013967)	ENSEEEG00000013966	CPZ (ENSEEEG00000013949)	hmx4 (ENSEEEG00000013945)	hmx1 (ENSEEEG00000013943)	adra2c (ENSEEEG00000013942)
Cyprinoidei	ANCESTRAL SPECIES	22	ENSGT00540000073610.A	ENSGT00520000058756	ENSGT00940000156393.a.b.c	ENSGT01100000263483.E.b.a.c.b.a.a	ENSGT01100000263483.E.b.a.c.b.a.b	ENSGT01100000263483.E.b.a.c.a.a	ENSGT01100000263483.F.a.eb	ENSGT00940000157807.g.b	ENSGT00940000162502.a	ENSGT00940000154259.b.b	ENSGT00390000011517.a.a.c.a.b.a.d	ENSGT00390000011517.a.a.c.a.b.a.c	ENSGT00950000183201.b.a.b ##31	ENSGT00390000008828.fb.b #32	ENSGT00950000182915.a.a.b #33	ENSGT00950000183174.B.a.e #22	ENSGT00940000157090.h #25	ENSGT00940000159570.a	ENSGT00950000183001.b.b.a	ENSGT00940000156391.d	ENSGT00940000165038.a	ENSGT00940000162580.b.b	ENSGT00940000161707.a.a	ENSGT00390000004855	ENSGT00390000015386.a	ENSGT00940000164407.a.a	ENSGT00390000015863	ENSGT00940000153322.B.c	ENSGT00390000017284.a.b.d	ENSGT00940000155980.B	ENSGT00940000169481.a
Zebrafish	MODERN SPECIES		ENSDARG00000079631	zgc:152658 (ENSDARG00000018587)	zgc:194443 (ENSDARG00000078182)	ENSDARG00000095065	ENSDARG00000109438	ENSDARG00000074610	si:ch211-113e8.5 (ENSDARG00000069707)	TESK1 (ENSDARG00000078251)	faah2a (ENSDARG00000008457)	TXN (ENSDARG00000031435)	ENSDARG00000077874	ENSDARG00000069710	ENSDARG00000079552 ##31	scoca (ENSDARG00000087333) #32	clgn (ENSDARG00000009315) #33	naa15b (ENSDARG00000030368) #22	ENSDARG00000052899	zgc:153642 (ENSDARG00000052900)	htra3a (ENSDARG00000052895)	GPR78 (ENSDARG00000074600)	CPZ (ENSDARG00000075521)	hmx4 (ENSDARG00000007941)	hmx1 (ENSDARG00000095651)	adra2c (ENSDARG00000069669)	lrpap1 (ENSDARG00000033604)	DOK7 (ENSDARG00000060236)	rgs12b (ENSDARG00000036774)	htt (ENSDARG00000052866)	si:ch211-89o9.4 (ENSDARG00000093237)	paip2b (ENSDARG00000008706)	ENSDARG00000078108
Cyprininae	DUPLICATION
Cyprininae	DUPLICATION
Cyprininae	ANCESTRAL SPECIES	169						ENSGT01100000263483.E.b.a.c.a.a.b	ENSGT01100000263483.F.a.eb	ENSGT00940000157807.g.b.k.b	ENSGT00940000162502.a	ENSGT00940000154259.b.b	ENSGT00390000011517.a.a.c.a.b.a.d	ENSGT00390000011517.a.a.c.a.b.a.c	ENSGT00950000183201.b.a.b.d ##31	ENSGT00390000008828.fb.b.a #32	ENSGT00950000182915.a.a.b.a #33	ENSGT00950000183174.B.a.e.e.a #22	ENSGT00940000157090.h.b #25	ENSGT00940000159570.a.a	ENSGT00950000183001.b.b.a.a	ENSGT00940000156391.d.c.b	ENSGT00940000165038.a.f	ENSGT00940000162580.b.b.c	ENSGT00940000161707.a.a.d	ENSGT00390000004855.f	ENSGT00390000015386.a.b	ENSGT00940000164407.a.a.e	ENSGT00390000015863.c	ENSGT00390000017284.a.b.d.b	ENSGT00940000155980.B.b	ENSGT00940000169481.b	ENSGT00990000210217
Goldfish	MODERN SPECIES		ing2 (ENSCARG00000017344)	ENSCARG00000017339	aip (ENSCARG00000017321)	cdk2ap2 (ENSCARG00000017310)	cntf (ENSCARG00000017305)	ENSCARG00000017294	ENSCARG00000017279	ENSCARG00000017270	ENSCARG00000017266	TESK1 (ENSCARG00000017202)	faah2a (ENSCARG00000017083)	zgc:56493 (ENSCARG00000017066)	ENSCARG00000017032	scoca (ENSCARG00000017016) #32	clgn (ENSCARG00000016900) #33	naa15b (ENSCARG00000014209) #22	RAB33B (ENSCARG00000014143) #25	htra3a (ENSCARG00000014129)	GPR78 (ENSCARG00000014122)	CPZ (ENSCARG00000013918)	hmx4 (ENSCARG00000013893)	hmx1 (ENSCARG00000013888)	adra2c (ENSCARG00000013885)	lrpap1 (ENSCARG00000013234)	DOK7 (ENSCARG00000013185)	rgs12b (ENSCARG00000013113)	htt (ENSCARG00000011444)	paip2b (ENSCARG00000011311)	ENSCARG00000011272	ENSCARG00000011250	vps37c (ENSCARG00000011241)
Cyprininae_a	ANCESTRAL SPECIES	76	ENSGT00940000160334.p	ENSGT00940000157294.c.b	ENSGT00390000015958.c.a	ENSGT00540000073610.A.a	ENSGT00940000156393.a.b.c.b	ENSGT01100000263483.E.b.a.c.b.a.a.b	ENSGT01100000263483.E.b.a.c.b.a.b	ENSGT00940000157807.g.b.l	ENSGT00940000162502.a.a	ENSGT00940000154259.b.b.a	ENSGT00390000011517.a.a.c.a.b.a.d	ENSGT00390000011517.a.a.c.a.b.a.c	ENSGT00950000183201.b.a.b.d ##31	ENSGT00390000008828.fb.b.a #32	ENSGT00950000182915.a.a.b.a #33	ENSGT00950000183174.B.a.e.e.a #22	ENSGT00940000157090.h.b #25	ENSGT00940000159570.a.a	ENSGT00950000183001.b.b.a.a	ENSGT00940000156391.d.c.b	ENSGT00940000165038.a.f	ENSGT00940000162580.b.b.c	ENSGT00940000161707.a.a.d	ENSGT00390000004855.f	ENSGT00390000015386.a.b	ENSGT00940000164407.a.a.e	ENSGT00390000015863.c	ENSGT00390000017284.a.b.d.b	ENSGT00940000155980.B.b	ENSGT00940000169481.b	ENSGT00990000210217
Common carp reference	MODERN SPECIES	22	ENSCCRG00000056872	ENSCCRG00000077796	ENSCCRG00000073840	ENSCCRG00000056721	ENSCCRG00000023521	ENSCCRG00000023502	faah2a (ENSCCRG00000058192)	zgc:56493 (ENSCCRG00000071331)	ENSCCRG00000000441	ENSCCRG00000061939	ENSCCRG00000063458	ENSCCRG00000079931 ##31	ENSCCRG00000005171 ##31	scoca (ENSCCRG00000054316) #32	clgn (ENSCCRG00000013821) #33	naa15b (ENSCCRG00000053315) #22	htra3a (ENSCCRG00000062143)	GPR78 (ENSCCRG00000043794)	ENSCCRG00000000645	ENSCCRG00000063031	hmx4 (ENSCCRG00000071347)	hmx1 (ENSCCRG00000070286)	adra2c (ENSCCRG00000000657)	lrpap1 (ENSCCRG00000012516)	DOK7 (ENSCCRG00000012914)	rgs12b (ENSCCRG00000029622)	htt (ENSCCRG00000029374)	ENSCCRG00000019268	paip2b (ENSCCRG00000054110)	ENSCCRG00000069990	ENSCCRG00000060124
Golden-line barbel	MODERN SPECIES	570												ENSSGRG00000010099 ##31	ENSSGRG00000010098 ##31	scoca (ENSSGRG00000010093) #32	clgn (ENSSGRG00000009907) #33	naa15b (ENSSGRG00000009323) #22	RAB33B (ENSSGRG00000009305) #25	htra3a (ENSSGRG00000009304)	ENSSGRG00000009300	hmx4 (ENSSGRG00000009299)	hmx1 (ENSSGRG00000009298)	adra2c (ENSSGRG00000009297)	lrpap1 (ENSSGRG00000009097)	DOK7 (ENSSGRG00000009091)	rgs12b (ENSSGRG00000009077)	htt (ENSSGRG00000008900)	paip2b (ENSSGRG00000008873)	ENSSGRG00000008865	ENSSGRG00000008861	ENSSGRG00000008854	vps37c (ENSSGRG00000008851)
Cyprininae	ANCESTRAL SPECIES	362														ENSGT00390000008828.fb.b.b #32	ENSGT00950000182915.a.a.b.b #33	ENSGT00950000183174.B.a.e.e.b #22	ENSGT00940000157090.h.a #25	ENSGT01100000263541.a.a.b.a.a.b.b	ENSGT01100000263541.a.a.b.a.a.b.a	ENSGT00940000159570.a.b	ENSGT00950000183001.b.b.a.b	ENSGT00940000156391.d.c.a	ENSGT00940000165038.a.e	ENSGT00940000162580.b.b.d	ENSGT00940000161707.a.a.c	ENSGT00390000004855.e	ENSGT00390000015386.a.a	ENSGT00940000164407.a.a.f	ENSGT00390000015863.d	ENSGT00390000017284.a.b.d.a	ENSGT00940000155980.B.a
Goldfish	DUPLICATION
Goldfish	MODERN SPECIES	1519														scoca (ENSCARG00000045806) #32	clgn (ENSCARG00000045722) #33	naa15b (ENSCARG00000040839) #22	RAB33B (ENSCARG00000040667) #25	zgc:153642 (ENSCARG00000040660)
Goldfish	MODERN SPECIES	1699																naa15b (ENSCARG00000036306) #22
Cyprininae_a	ANCESTRAL SPECIES	219								ENSGT01100000263483.E.b.a.c.a.a.a.a	ENSGT00940000157807.g.b.k.a	ENSGT00940000162502.a.b	ENSGT00940000154259.b.b.b	ENSGT00950000183201.b.a.b.c ##31	ENSGT00950000183201.b.a.a.a ##31	ENSGT00390000008828.fb.b.b #32	ENSGT00950000182915.a.a.b.b #33	ENSGT00950000183174.B.a.e.e.b #22	ENSGT00940000157090.h.a #25	ENSGT01100000263541.a.a.b.a.a.b.b	ENSGT01100000263541.a.a.b.a.a.b.a	ENSGT00940000159570.a.b	ENSGT00950000183001.b.b.a.b	ENSGT00940000156391.d.d	ENSGT00940000156391.d.c.a	ENSGT00940000165038.a.e	ENSGT00940000162580.b.b.d	ENSGT00940000161707.a.a.c	ENSGT00390000004855.e	ENSGT00390000015386.a.a	ENSGT00940000164407.a.a.f	ENSGT00390000015863.d	ENSGT00390000017284.a.b.d.a
Common carp reference	MODERN SPECIES	27	ENSCCRG00000067650	cntf (ENSCCRG00000025703)	ENSCCRG00000077428	ENSCCRG00000057879	ENSCCRG00000054934	ENSCCRG00000025732	ENSCCRG00000023488	ENSCCRG00000053249	ENSCCRG00000004413	faah2a (ENSCCRG00000017057)	zgc:56493 (ENSCCRG00000076188)	ENSCCRG00000069258 ##31	ENSCCRG00000062927 ##31	scoca (ENSCCRG00000013811) #32	clgn (ENSCCRG00000000597) #33	naa15b (ENSCCRG00000069209) #22	ENSCCRG00000059639 #25	zgc:153642 (ENSCCRG00000019090)	zgc:153642 (ENSCCRG00000052899)	ENSCCRG00000041846	htra3a (ENSCCRG00000024478)	ENSCCRG00000032148	hmx4 (ENSCCRG00000064526)	hmx1 (ENSCCRG00000032131)	adra2c (ENSCCRG00000065027)	lrpap1 (ENSCCRG00000032124)	DOK7 (ENSCCRG00000032118)	rgs12b (ENSCCRG00000046322)	htt (ENSCCRG00000075243)	paip2b (ENSCCRG00000019259)	ENSCCRG00000076876
Golden-line barbel	DUPLICATION
Golden-line barbel	MODERN SPECIES	16	ENSSGRG00000036251	ENSSGRG00000036252	ENSSGRG00000036253	ENSSGRG00000036254	ENSSGRG00000036255	ENSSGRG00000036256	TESK1 (ENSSGRG00000036258)	faah2a (ENSSGRG00000036259)	zgc:56493 (ENSSGRG00000036260)	ENSSGRG00000036261	ENSSGRG00000036262 ##31	ENSSGRG00000036263 ##31	ENSSGRG00000036264 ##31	scoca (ENSSGRG00000036266) #32	clgn (ENSSGRG00000036268) #33	naa15b (ENSSGRG00000036390) #22	RAB33B (ENSSGRG00000036676) #25	zgc:153642 (ENSSGRG00000036678)	zgc:153642 (ENSSGRG00000036679)	htra3a (ENSSGRG00000036680)	GPR78 (ENSSGRG00000036681)	CPZ (ENSSGRG00000036683)	hmx4 (ENSSGRG00000036721)	hmx1 (ENSSGRG00000036722)	adra2c (ENSSGRG00000036724)	lrpap1 (ENSSGRG00000036737)	rgs12b (ENSSGRG00000037067)	htt (ENSSGRG00000037092)	paip2b (ENSSGRG00000037768)	ENSSGRG00000037770	ENSSGRG00000037771
Golden-line barbel	MODERN SPECIES	3109																naa15b (ENSSGRG00000001811) #22
Cyprininae	ANCESTRAL SPECIES																	ENSGT00950000183174.B.a.e.f #22
Cyprininae_a	ANCESTRAL SPECIES																	ENSGT00950000183174.B.a.e.f #22
Golden-line barbel	DUPLICATION
Golden-line barbel	MODERN SPECIES	4999																ENSSGRG00000003427 #22
Golden-line barbel	MODERN SPECIES	4894																ENSSGRG00000002804 #22
Euteleosteomorpha	ANCESTRAL SPECIES	215								ENSGT00940000163454.a.a.a.a	ENSGT00940000163454.a.a.b	ENSGT01050000245024	ENSGT00950000183130.A	ENSGT00950000182915.a.a.b #33	ENSGT00390000008828.fb.b #32	ENSGT00950000183201.b.a.b ##31	ENSGT00870000137155	ENSGT00950000183174.B.a.e #22	ENSGT00940000157090.h #25	ENSGT00940000154953.b #20	ENSGT00940000155249.g #19	ENSGT00940000177650	ENSGT00940000156295.g #15	ENSGT00940000158277.b #11	ENSGT00390000006284 #10	ENSGT00730000111168 #9	ENSGT00940000154761	ENSGT00940000154617.A.a.a	ENSGT00940000156892.b	ENSGT00940000158062.f.a	ENSGT00940000158708.a	ENSGT00940000156228.p	ENSGT00940000167973
Protacanthopterygii	ANCESTRAL SPECIES	134								ENSGT00940000163454.a.a.a.a	ENSGT00940000163454.a.a.b	ENSGT01050000245024	ENSGT00870000137155	ENSGT00390000008828.fb.b #32	ENSGT00950000182915.a.a.b #33	ENSGT00950000183130.A	ENSGT00950000183201.b.a.b ##31	ENSGT00950000183174.B.a.e #22	ENSGT00940000157090.h #25	ENSGT00940000154953.b #20	ENSGT00940000155249.g #19	ENSGT00970000196926	ENSGT00940000156295.g #15	ENSGT00940000158277.b #11	ENSGT00390000006284 #10	ENSGT00730000111168 #9	ENSGT00940000154761.ac.a	ENSGT00940000154617.A.a.a	ENSGT00940000156892.b	ENSGT00940000158062.f.a	ENSGT00940000158708.a	ENSGT00950000182932.B.a	ENSGT00940000158505.n.b
Northern pike	MODERN SPECIES	24	ENSELUG00000028614	RNF38 (ENSELUG00000032719)	CRIP2 (ENSELUG00000026773)	CI105 (ENSELUG00000011089)	ENSELUG00000000391	ENSELUG00000011127	ENSELUG00000011134	ENSELUG00000011185	ENSELUG00000011159	ENSELUG00000011192	scoca (ENSELUG00000002591) #32	SCOC (ENSELUG00000030421) #32	clgn (ENSELUG00000011262) #33	exosc9 (ENSELUG00000011222)	ENSELUG00000011295 ##31	naa15b (ENSELUG00000011339) #22	ENSELUG00000011352 #25	elf2b (ENSELUG00000011388) #20	NOCT (ENSELUG00000011415) #19	ENSELUG00000011429	pcdh18a (ENSELUG00000011442) #15	pcdh10a (ENSELUG00000000410) #11	SCLT1 (ENSELUG00000011546) #9	zgc:77739 (ENSELUG00000011495) #10	DNAH6 (ENSELUG00000011602)	ENSELUG00000011626	chrnb3a (ENSELUG00000001063)	chrna6 (ENSELUG00000000426)	ENSELUG00000001511	ENSELUG00000011836	ENSELUG00000011904
Salmoninae	ANCESTRAL SPECIES																	ENSGT00950000183174.B.a.e #22
Huchen	DUPLICATION
Huchen	MODERN SPECIES	485																NAA15 (ENSHHUG00000046640) #22	ZPLD1 (ENSHHUG00000046685)	ENSHHUG00000046696	ENSHHUG00000046701	ENSHHUG00000046703	dbf4 (ENSHHUG00000046705)	slc25a40 (ENSHHUG00000046708)	ENSHHUG00000046709	rundc3b (ENSHHUG00000046722)	ENSHHUG00000046741
Huchen	MODERN SPECIES	12732																ENSHHUG00000017753 #22
Huchen	DUPLICATION
Huchen	MODERN SPECIES	5432															ENSHHUG00000004444	ENSHHUG00000004439 #22	ENSHHUG00000004429
Huchen	MODERN SPECIES	9281																ENSHHUG00000037920 #22
Acanthomorphata	ANCESTRAL SPECIES	44								ENSGT00940000163454.a.a.a.a	ENSGT00940000163454.a.a.b	ENSGT01050000245024	ENSGT00950000183130.A	ENSGT00950000182915.a.a.b #33	ENSGT00390000008828.fb.b #32	ENSGT00950000183201.b.a.b ##31	ENSGT00870000137155	ENSGT00950000183174.B.a.e #22	ENSGT00940000157090.h #25	ENSGT00940000154953.b #20	ENSGT00940000155249.g #19	ENSGT00940000158431.a.a.a.a.a.a.d.b.a.b	ENSGT00940000157622.a.a	ENSGT01100000263556.a.a.q.d	ENSGT01020000230338.a.b.a	ENSGT00940000157622.a.b	ENSGT00940000156045.b	ENSGT00940000171111	ENSGT00390000003068	ENSGT00530000063359.B	ENSGT00940000165124.d	ENSGT00940000164963.c.b	ENSGT00940000158505.n.b
Cod	MODERN SPECIES	16	ENSGMOG00000037042	ENSGMOG00000031763	ENSGMOG00000012958	ENSGMOG00000012950	ENSGMOG00000020472	ENSGMOG00000024201	ENSGMOG00000012911	ENSGMOG00000012882	ENSGMOG00000017769	ENSGMOG00000034797	ENSGMOG00000014111	ENSGMOG00000014093	ENSGMOG00000014066	ENSGMOG00000014028 #33	ENSGMOG00000025257 #32	ENSGMOG00000019579 #22	ENSGMOG00000028043 #25	ENSGMOG00000035091	ENSGMOG00000019552 #20	ENSGMOG00000019550 #19	ENSGMOG00000029552	slc43a3a (ENSGMOG00000019546)	ENSGMOG00000019542	timm10 (ENSGMOG00000029489)	unc93b1 (ENSGMOG00000019535)	ENSGMOG00000036402	ENSGMOG00000019589	rtn4rl2a (ENSGMOG00000030810)	ENSGMOG00000034072	ENSGMOG00000034806	ENSGMOG00000003609
Euacanthomorphacea	ANCESTRAL SPECIES	3	ENSGT00940000160081.c.a	ENSGT00940000160777	ENSGT00440000035688	ENSGT00390000000463.a	ENSGT00950000182933.B.b	ENSGT00940000157338.a	ENSGT00950000183035.b.f	ENSGT00940000163234.a.b.h.a	ENSGT00940000163454.a.a.a.a	ENSGT00940000163454.a.a.b	ENSGT00950000183130.A	ENSGT00950000182915.a.a.b #33	ENSGT00390000008828.fb.b #32	ENSGT00950000183201.b.a.b ##31	ENSGT00870000137155	ENSGT00950000183174.B.a.e #22	ENSGT00940000157090.h #25	ENSGT00940000154953.b #20	ENSGT00940000155249.g #19	ENSGT00940000167646	ENSGT00940000163186	ENSGT00940000157622.a.a	ENSGT01100000263556.a.a.q.d	ENSGT01020000230338.a.b.a	ENSGT00940000157622.a.b	ENSGT00940000156045.b	ENSGT00940000171111	ENSGT00390000003068	ENSGT00530000063359.B	ENSGT00940000165124.d	ENSGT00940000164963.c.b
Pinecone sodierfish	MODERN SPECIES		ENSMMDG00005006920	ENSMMDG00005006827	ENSMMDG00005006779	AXIN2 (ENSMMDG00005006763)	ENSMMDG00005006754	ENSMMDG00005006745	ENSMMDG00005006741	ENSMMDG00005006739	ENSMMDG00005006737	ENSMMDG00005006735	exosc9 (ENSMMDG00005006725)	clgn (ENSMMDG00005003291) #33	scoca (ENSMMDG00005003212) #32	ENSMMDG00005003208 ##31	ENSMMDG00005003205	naa15b (ENSMMDG00005001073) #22	RAB33B (ENSMMDG00005001047) #25	elf2b (ENSMMDG00005001044) #20	NOCT (ENSMMDG00005001038) #19	ENSMMDG00005001036	ENSMMDG00005001032	slc43a3a (ENSMMDG00005001031)	ENSMMDG00005001029	slc43a3a (ENSMMDG00005001026)	ENSMMDG00005001025	CTNND1 (ENSMMDG00005000863)	timm10 (ENSMMDG00005000851)	unc93b1 (ENSMMDG00005000840)	ENSMMDG00005000837	ENSMMDG00005000834	rtn4rl2a (ENSMMDG00005000832)
Percomorphaceae	ANCESTRAL SPECIES	20	ENSGT00940000160777	ENSGT00440000035688	ENSGT00390000000463.a	ENSGT00950000182933.B.b	ENSGT00940000157338.a	ENSGT00950000183035.b.f	ENSGT00940000163234.a.b.h.a.a.b	ENSGT00940000163234.a.b.h.a.b	ENSGT00940000163454.a.a.a.a	ENSGT00940000163454.a.a.b	ENSGT00950000183130.A	ENSGT00950000182915.a.a.b #33	ENSGT00390000008828.fb.b #32	ENSGT00950000183201.b.a.b ##31	ENSGT00870000137155	ENSGT00950000183174.B.a.e #22	ENSGT00940000157090.h #25	ENSGT00940000154953.b #20	ENSGT00940000155249.g #19	ENSGT00940000167646	ENSGT00940000163186	ENSGT00940000157622.a.a	ENSGT00940000157622.a.b	ENSGT00940000156045.b	ENSGT00940000171111	ENSGT00390000003068	ENSGT00530000063359.B	ENSGT00940000165124.d	ENSGT00940000164963.c.b	ENSGT00940000158505.n.b	ENSGT00950000182932.B.a
Tiger tail seahorse	MODERN SPECIES	382	AXIN2 (ENSHCOG00000013373)	ENSHCOG00000013357	ENSHCOG00000013341	TEX2 (ENSHCOG00000013335)	ENSHCOG00000013300	ENSHCOG00000013281	ENSHCOG00000013272	ENSHCOG00000013266	ENSHCOG00000013258	ENSHCOG00000013219	ENSHCOG00000013016	exosc9 (ENSHCOG00000013001)	clgn (ENSHCOG00000012943) #33	scoca (ENSHCOG00000012921) #32	ENSHCOG00000012903 ##31	naa15b (ENSHCOG00000012888) #22	RAB33B (ENSHCOG00000012834) #25	ENSHCOG00000012825	ENSHCOG00000012810
Percomorphaceae_B	ANCESTRAL SPECIES		ENSGT00440000035688	ENSGT00390000000463.a	ENSGT00950000182933.B.b	ENSGT00530000063725.o	ENSGT00940000157338.a	ENSGT00950000183035.b.f	ENSGT00940000163234.a.b.h.a.a.b	ENSGT00940000163234.a.b.h.a.b	ENSGT00940000163454.a.a.a.a	ENSGT00940000163454.a.a.b	ENSGT00950000183130.A	ENSGT00950000182915.a.a.b #33	ENSGT00390000008828.fb.b #32	ENSGT00950000183201.b.a.b ##31	ENSGT00870000137155	ENSGT00950000183174.B.a.e #22	ENSGT00940000157090.h #25	ENSGT00990000203987	ENSGT00940000154953.b #20	ENSGT00940000155249.g #19	ENSGT00940000167646	ENSGT00940000177894	ENSGT00940000163186	ENSGT00940000157622.a.a	ENSGT00940000157622.a.b	ENSGT00940000156045.b	ENSGT00940000171111	ENSGT00390000003068	ENSGT00530000063359.B	ENSGT00940000165124.d	ENSGT00940000164963.c.b
Ovalentaria	ANCESTRAL SPECIES		ENSGT00390000000463.a	ENSGT00950000182933.B.b	ENSGT00990000203866	ENSGT00530000063725.o	ENSGT00940000157338.a	ENSGT00950000183035.b.f	ENSGT00940000163234.a.b.h.a.a.b	ENSGT00940000163234.a.b.h.a.b	ENSGT00940000163454.a.a.a.a	ENSGT00940000163454.a.a.b	ENSGT00950000183130.A	ENSGT00950000182915.a.a.b #33	ENSGT00390000008828.fb.b #32	ENSGT00950000183201.b.a.b ##31	ENSGT00870000137155	ENSGT00950000183174.B.a.e #22	ENSGT00940000157090.h #25	ENSGT00990000203987	ENSGT00940000154953.b #20	ENSGT00940000155249.g #19	ENSGT00940000177894	ENSGT00940000163186	ENSGT00940000157622.a.a	ENSGT00940000156045.b	ENSGT00940000171111.e	ENSGT00390000003068	ENSGT00530000063359.B	ENSGT00940000165124.d	ENSGT00940000164963.c.b	ENSGT00940000158505.n.b	ENSGT00950000182932.B.a
Atherinomorphae	ANCESTRAL SPECIES	23	ENSGT00440000035688	ENSGT00390000000463.a	ENSGT00950000182933.B.b	ENSGT00530000063725.o	ENSGT00940000157338.a	ENSGT00950000183035.b.f	ENSGT00940000163234.a.b.h.a.a.b	ENSGT00940000163234.a.b.h.a.b	ENSGT00940000163454.a.a.a.a	ENSGT00940000163454.a.a.b	ENSGT00950000183130.A	ENSGT00950000182915.a.a.b #33	ENSGT00390000008828.fb.b #32	ENSGT00950000183201.b.a.b ##31	ENSGT00870000137155	ENSGT00950000183174.B.a.e #22	ENSGT00940000157090.h #25	ENSGT00940000154953.b #20	ENSGT00940000155249.g #19	ENSGT00940000177894	ENSGT00940000163186	ENSGT00940000157622.a.a	ENSGT00940000156045.b	ENSGT00940000171111.e	ENSGT00390000003068	ENSGT00530000063359.B	ENSGT00940000165124.d	ENSGT00940000164963.c.b	ENSGT00940000158505.n.b	ENSGT00950000182932.B.a	ENSGT01020000230338.a.a
Cyprinodontiformes	ANCESTRAL SPECIES	24	ENSGT00440000035688	ENSGT00390000000463.a	ENSGT00950000182933.B.b	ENSGT00530000063725.o	ENSGT00940000157338.a	ENSGT00950000183035.b.f	ENSGT00940000163234.a.b.h.a.a.b	ENSGT00940000163234.a.b.h.a.b	ENSGT00940000163454.a.a.a.a	ENSGT00940000163454.a.a.b	ENSGT00950000183130.A	ENSGT00950000182915.a.a.b #33	ENSGT00390000008828.fb.b #32	ENSGT00950000183201.b.a.b ##31	ENSGT00870000137155	ENSGT00950000183174.B.a.e #22	ENSGT00940000157090.h #25	ENSGT00940000154953.b #20	ENSGT00940000155249.g #19	ENSGT00940000177894	ENSGT00940000163186	ENSGT00940000157622.a.a	ENSGT00940000156045.b	ENSGT00940000171111.e	ENSGT00390000003068	ENSGT00530000063359.B	ENSGT00940000165124.d	ENSGT00940000164963.c.b	ENSGT00940000158505.n.b	ENSGT00950000182932.B.a	ENSGT01020000230338.a.a
Aplocheiloidei	ANCESTRAL SPECIES	31	ENSGT00940000160777	ENSGT00440000035688	ENSGT00390000000463.a	ENSGT00950000182933.B.b	ENSGT00530000063725.o	ENSGT00940000157338.a	ENSGT00950000183035.b.f	ENSGT00940000163234.a.b.h.a.b	ENSGT00940000163454.a.a.a.a	ENSGT00940000163454.a.a.b	ENSGT00950000183130.A	ENSGT00950000182915.a.a.b #33	ENSGT00390000008828.fb.b #32	ENSGT00950000183201.b.a.b ##31	ENSGT00870000137155	ENSGT00950000183174.B.a.e #22	ENSGT00940000157090.h #25	ENSGT00940000154953.b #20	ENSGT00940000155249.g #19	ENSGT00940000163186	ENSGT00940000157622.a.a	ENSGT00940000156045.b	ENSGT00390000003068	ENSGT00530000063359.B	ENSGT00940000165124.d	ENSGT00940000164963.c.b	ENSGT00940000158505.n.b	ENSGT01020000230338.a.a	ENSGT00940000164685.a	ENSGT00390000011517.a.a.c.b	ENSGT00940000162009.b
Mangrove rivulus	MODERN SPECIES	175	CBX4 (ENSKMAG00000020513)	CARD14 (ENSKMAG00000020488)	ccdc40 (ENSKMAG00000020460)	TEX2 (ENSKMAG00000020442)	ENSKMAG00000020424	ENSKMAG00000020399	AXIN2 (ENSKMAG00000020364)	ENSKMAG00000020334	slc47a2.1 (ENSKMAG00000020263)	ENSKMAG00000020222	ENSKMAG00000020201	exosc9 (ENSKMAG00000020177)	clgn (ENSKMAG00000020139) #33	scoca (ENSKMAG00000020126) #32	ENSKMAG00000020113 ##31	naa15b (ENSKMAG00000020058) #22	RAB33B (ENSKMAG00000020034) #25	ENSKMAG00000020025	elf2b (ENSKMAG00000020008) #20	NOCT (ENSKMAG00000019996) #19	ENSKMAG00000019980	slc43a3a (ENSKMAG00000019956)	CTNND1 (ENSKMAG00000019858)	timm10 (ENSKMAG00000019827)	unc93b1 (ENSKMAG00000019810)	ENSKMAG00000019796	rtn4rl2a (ENSKMAG00000019785)	ENSKMAG00000019770	cabp2a (ENSKMAG00000019743)
Turquoise killifish	MODERN SPECIES	1611	ENSNFUG00015007818	slc22a7b.1 (ENSNFUG00015007834)	ENSNFUG00015007847	DHX15 (ENSNFUG00015007905)	SOD3 (ENSNFUG00015008382)	HADH (ENSNFUG00015008386)	ENSNFUG00015008394	ENSNFUG00015008398	CCDC109B (ENSNFUG00015008408)	casp6a (ENSNFUG00015008416)	exosc9 (ENSNFUG00015008492)	CLGN (ENSNFUG00015008735) #33	SCOC (ENSNFUG00015009965) #32	ENSNFUG00015009983 ##31	ENSNFUG00015010006	naa15b (ENSNFUG00015010196) #22	RAB33B (ENSNFUG00015012863) #25	ENSNFUG00015012874	ENSNFUG00015012888	gprc5bb (ENSNFUG00015012899)	C1H16ORF88 (ENSNFUG00015012910)	exosc1 (ENSNFUG00015012920)	PGAM1A (ENSNFUG00015012935)	pi4k2a (ENSNFUG00015012951)	ENSNFUG00015012968	ENSNFUG00015012972	ENSNFUG00015012975	HIST1H2BD (ENSNFUG00015012978)	ENSNFUG00015012981	Nfu_g_1_000275 (ENSNFUG00015012986)	ENSNFUG00015012990
Cyprinodontoidei	ANCESTRAL SPECIES	15	ENSGT00390000000463.a	ENSGT00950000182933.B.b	ENSGT00990000203866	ENSGT00530000063725.o.r.b	ENSGT00940000157338.a	ENSGT00950000183035.b.f	ENSGT00940000163234.a.b.h.a.a.b	ENSGT00940000163234.a.b.h.a.b	ENSGT00940000163454.a.a.a.a	ENSGT00940000163454.a.a.b	ENSGT00950000183130.A	ENSGT00950000182915.a.a.b #33	ENSGT00390000008828.fb.b #32	ENSGT00950000183201.b.a.b ##31	ENSGT00870000137155	ENSGT00950000183174.B.a.e #22	ENSGT00940000157090.h #25	ENSGT00940000154953.b #20	ENSGT00940000155249.g #19	ENSGT00940000177894	ENSGT00940000163186	ENSGT00940000157622.a.a	ENSGT00940000156045.b	ENSGT00940000171111.e	ENSGT00390000003068	ENSGT00530000063359.B	ENSGT00940000165124.d	ENSGT00940000164963.c.b	ENSGT00940000158505.n.b	ENSGT00950000182932.B.a	ENSGT01020000230338.a.a
Poeciliinae	ANCESTRAL SPECIES	9	ENSGT00390000000463.a	ENSGT00950000182933.B.b	ENSGT00530000063725.o.r.a	ENSGT00530000063725.o.r.b	ENSGT00940000157338.a	ENSGT00950000183035.b.f	ENSGT00940000163234.a.b.h.a.a.b	ENSGT00940000163234.a.b.h.a.b	ENSGT00940000163454.a.a.a.a	ENSGT00940000163454.a.a.b	ENSGT00950000183130.A	ENSGT00950000182915.a.a.b #33	ENSGT00390000008828.fb.b #32	ENSGT00950000183201.b.a.b ##31	ENSGT00870000137155	ENSGT00950000183174.B.a.e #22	ENSGT00940000157090.h #25	ENSGT00940000154953.b #20	ENSGT00940000155249.g #19	ENSGT00940000177894	ENSGT00940000163186	ENSGT00940000157622.a.a	ENSGT00940000156045.b	ENSGT00940000171111.e	ENSGT00390000003068	ENSGT00530000063359.B	ENSGT00940000165124.d	ENSGT00940000164963.c.b	ENSGT00940000158505.n.b	ENSGT01020000230338.a.a	ENSGT00940000154390.G.b.d
Poecilia	ANCESTRAL SPECIES	6	ENSGT00390000000463.a	ENSGT00950000182933.B.b	ENSGT00530000063725.o.r.a	ENSGT00530000063725.o.r.b	ENSGT00940000157338.a	ENSGT00950000183035.b.f	ENSGT00940000163234.a.b.h.a.a.b	ENSGT00940000163234.a.b.h.a.b	ENSGT00940000163454.a.a.a.a	ENSGT00940000163454.a.a.b	ENSGT00950000183130.A	ENSGT00950000182915.a.a.b #33	ENSGT00390000008828.fb.b #32	ENSGT00950000183201.b.a.b ##31	ENSGT00870000137155	ENSGT00950000183174.B.a.e #22	ENSGT00940000157090.h #25	ENSGT00940000154953.b #20	ENSGT00940000155249.g #19	ENSGT00940000163186	ENSGT00940000157622.a.a	ENSGT00940000156045.b	ENSGT00940000171111.e	ENSGT00390000003068	ENSGT00530000063359.B	ENSGT00940000165124.d	ENSGT00940000164963.c.b	ENSGT00940000158505.n.b	ENSGT01020000230338.a.a	ENSGT00940000154390.G.b.d	ENSGT00940000164685.a
NAME_6	ANCESTRAL SPECIES	4	ENSGT00950000182933.B.b	ENSGT00530000063725.o.r.a.c	ENSGT00530000063725.o.r.a.d	ENSGT00530000063725.o.r.b	ENSGT00940000157338.a	ENSGT00950000183035.b.f	ENSGT00940000163234.a.b.h.a.a.b	ENSGT00940000163234.a.b.h.a.b	ENSGT00940000163454.a.a.a.a	ENSGT00940000163454.a.a.b	ENSGT00950000183130.A	ENSGT00950000182915.a.a.b #33	ENSGT00390000008828.fb.b #32	ENSGT00950000183201.b.a.b ##31	ENSGT00870000137155	ENSGT00950000183174.B.a.e #22	ENSGT00940000157090.h #25	ENSGT00940000154953.b #20	ENSGT00940000155249.g #19	ENSGT00940000163186	ENSGT00940000157622.a.a	ENSGT00940000156045.b	ENSGT00940000171111.e	ENSGT00390000003068	ENSGT00530000063359.B	ENSGT00940000165124.d	ENSGT00940000164963.c.b	ENSGT00940000158505.n.b	ENSGT01020000230338.a.a	ENSGT00940000154390.G.b.d	ENSGT00940000164685.a
Amazon molly	MODERN SPECIES	263	ENSPFOG00000020693	ENSPFOG00000016293	ENSPFOG00000022134	AXIN2 (ENSPFOG00000016245)	ENSPFOG00000016191	ENSPFOG00000016114	ENSPFOG00000024783	ENSPFOG00000016094	ENSPFOG00000016048	exosc9 (ENSPFOG00000016008)	clgn (ENSPFOG00000015933) #33	scoca (ENSPFOG00000015912) #32	ENSPFOG00000015909 ##31	ENSPFOG00000015878	ENSPFOG00000022787	naa15b (ENSPFOG00000015774) #22	RAB33B (ENSPFOG00000022360) #25	ENSPFOG00000022871	elf2b (ENSPFOG00000015734) #20	NOCT (ENSPFOG00000015717) #19	ENSPFOG00000022885	slc43a3a (ENSPFOG00000015668)	CTNND1 (ENSPFOG00000015520)	ENSPFOG00000015475	timm10 (ENSPFOG00000015473)	unc93b1 (ENSPFOG00000015365)	ENSPFOG00000015346	ENSPFOG00000015309	rtn4rl2a (ENSPFOG00000015294)	ENSPFOG00000015285	URGCP (ENSPFOG00000020692)
Sailfin molly	MODERN SPECIES	180						AXIN2 (ENSPLAG00000015754)	ENSPLAG00000015787	ENSPLAG00000015796	ENSPLAG00000015943	ENSPLAG00000015957	ENSPLAG00000016018	exosc9 (ENSPLAG00000016052)	clgn (ENSPLAG00000016104) #33	scoca (ENSPLAG00000016112) #32	ENSPLAG00000016114 ##31	naa15b (ENSPLAG00000016167) #22	RAB33B (ENSPLAG00000016172) #25	elf2b (ENSPLAG00000016212) #20	NOCT (ENSPLAG00000016228) #19	ENSPLAG00000016240	slc43a3a (ENSPLAG00000016322)	CTNND1 (ENSPLAG00000016356)	timm10 (ENSPLAG00000016377)	unc93b1 (ENSPLAG00000016394)	ENSPLAG00000016408	rtn4rl2a (ENSPLAG00000016419)	ENSPLAG00000016428	ENSPLAG00000016435	cabp2a (ENSPLAG00000016457)
Guppy	MODERN SPECIES	439	cbx8b (ENSPREG00000002636)	CBX4 (ENSPREG00000002620)	ENSPREG00000002457	TEX2 (ENSPREG00000002417)	ENSPREG00000002409	ENSPREG00000002391	AXIN2 (ENSPREG00000002332)	ENSPREG00000002305	ENSPREG00000002249	ENSPREG00000002220	ENSPREG00000002141	exosc9 (ENSPREG00000002069)	clgn (ENSPREG00000002049) #33	scoca (ENSPREG00000002027) #32	ENSPREG00000002013 ##31	naa15b (ENSPREG00000001936) #22	RAB33B (ENSPREG00000001864) #25	elf2b (ENSPREG00000001656) #20	NOCT (ENSPREG00000001623) #19	ENSPREG00000001604	slc43a3a (ENSPREG00000001585)	CTNND1 (ENSPREG00000001363)	ENSPREG00000001324	timm10 (ENSPREG00000001315)	unc93b1 (ENSPREG00000001297)	ENSPREG00000001270	rtn4rl2a (ENSPREG00000001243)	ENSPREG00000001230	ENSPREG00000001207	cabp2a (ENSPREG00000001198)	PTGDR2 (ENSPREG00000001193)
Platyfish	MODERN SPECIES	19	ENSXMAG00000017909	ccdc40 (ENSXMAG00000017901)	TEX2 (ENSXMAG00000017886)	ENSXMAG00000017884	ENSXMAG00000017882	ENSXMAG00000022160	AXIN2 (ENSXMAG00000017877)	ENSXMAG00000027929	ENSXMAG00000024366	ENSXMAG00000017850	ENSXMAG00000024968	exosc9 (ENSXMAG00000017823)	clgn (ENSXMAG00000017814) #33	scoca (ENSXMAG00000023569) #32	ENSXMAG00000024941 ##31	naa15b (ENSXMAG00000017774) #22	RAB33B (ENSXMAG00000023729) #25	elf2b (ENSXMAG00000017764) #20	NOCT (ENSXMAG00000017762) #19	ENSXMAG00000021130	ENSXMAG00000028290	slc43a3a (ENSXMAG00000017751)	CTNND1 (ENSXMAG00000017738)	ENSXMAG00000028702	timm10 (ENSXMAG00000017736)	unc93b1 (ENSXMAG00000017731)	ENSXMAG00000017728	ENSXMAG00000025847	rtn4rl2a (ENSXMAG00000017718)	ENSXMAG00000017717	cabp2a (ENSXMAG00000003851)
NAME_4	ANCESTRAL SPECIES	164						ENSGT00530000063725.o.r.b	ENSGT00940000157338.a	ENSGT00950000183035.b.f	ENSGT00940000163234.a.b.h.a.b	ENSGT00940000163454.a.a.a.a	ENSGT00940000163454.a.a.b	ENSGT00950000183130.A	ENSGT00950000182915.a.a.b #33	ENSGT00390000008828.fb.b #32	ENSGT00950000183201.b.a.b ##31	ENSGT00950000183174.B.a.e #22	ENSGT00940000157090.h #25	ENSGT00940000154953.b #20	ENSGT00940000155249.g #19	ENSGT00940000163186	ENSGT00940000157622.a.a	ENSGT00940000156045.b	ENSGT00940000171111.e	ENSGT00390000003068	ENSGT00530000063359.B	ENSGT00940000164963.c.b	ENSGT00940000158505.n.b	ENSGT00950000182932.B.a	ENSGT01020000230338.a.a	ENSGT00940000164685.a	ENSGT00940000178786
Mummichog	MODERN SPECIES	2273									ENSFHEG00000013303	ENSFHEG00000013317	ENSFHEG00000013345	clgn (ENSFHEG00000013409) #33	scoca (ENSFHEG00000013429) #32	ENSFHEG00000013435 ##31	ENSFHEG00000013443 ##31	naa15b (ENSFHEG00000013572) #22	ENSFHEG00000013592 #25	elf2b (ENSFHEG00000000596) #20	NOCT (ENSFHEG00000013623) #19	ENSFHEG00000013641	slc43a3a (ENSFHEG00000013685)	CTNND1 (ENSFHEG00000013724)	ENSFHEG00000013731	timm10 (ENSFHEG00000013744)	unc93b1 (ENSFHEG00000013810)	ENSFHEG00000013825	rtn4rl2a (ENSFHEG00000013848)	ENSFHEG00000013871	ENSFHEG00000013894	cabp2a (ENSFHEG00000013913)	ENSFHEG00000013919
Sheepshead minnow	MODERN SPECIES	527							AXIN2 (ENSCVAG00000001103)	ENSCVAG00000001102	slc47a2.1 (ENSCVAG00000001101)	ENSCVAG00000001100	ENSCVAG00000001099	exosc9 (ENSCVAG00000001098)	clgn (ENSCVAG00000001097) #33	scoca (ENSCVAG00000001096) #32	ENSCVAG00000001095 ##31	naa15b (ENSCVAG00000000043) #22	RAB33B (ENSCVAG00000000862) #25	elf2b (ENSCVAG00000001094) #20	NOCT (ENSCVAG00000001093) #19	ENSCVAG00000001092	slc43a3a (ENSCVAG00000001091)	CTNND1 (ENSCVAG00000001090)
Oryzias	ANCESTRAL SPECIES	15	ENSGT00390000006555	ENSGT00940000158476.a	ENSGT00940000160081.c.a	ENSGT00940000160777	ENSGT00440000035688	ENSGT00390000000463.a	ENSGT00950000182933.B.b	ENSGT00940000157338.a	ENSGT00950000183035.b.f	ENSGT00940000163234.a.b.h.a.b	ENSGT00950000183130.A	ENSGT00950000182915.a.a.b #33	ENSGT00390000008828.fb.b #32	ENSGT00950000183201.b.a.b ##31	ENSGT00870000137155	ENSGT00950000183174.B.a.e #22	ENSGT00940000157090.h #25	ENSGT00940000154953.b #20	ENSGT00940000155249.g #19	ENSGT00940000167646	ENSGT00940000177894	ENSGT00940000163186	ENSGT00940000157622.a.a	ENSGT00940000153676.a	ENSGT01030000234566.e.b.a.a.a.a	ENSGT00940000156167.b	ENSGT00390000004697	ENSGT00940000153322.B.c	ENSGT00940000165823.d	ENSGT01040000240400.c.a.b.a.b.a.b	ENSGT00940000157122.b.b
Oryzias_b	ANCESTRAL SPECIES	34	ENSGT00940000158604	ENSGT00390000006555	ENSGT00940000160081.c.a	ENSGT00940000160777	ENSGT00440000035688	ENSGT00390000000463.a	ENSGT00950000182933.B.b	ENSGT00940000157338.a	ENSGT00950000183035.b.f	ENSGT00940000163234.a.b.h.a.b	ENSGT00950000183130.A	ENSGT00950000182915.a.a.b #33	ENSGT00390000008828.fb.b #32	ENSGT00950000183201.b.a.b ##31	ENSGT00870000137155	ENSGT00950000183174.B.a.e #22	ENSGT00940000157090.h #25	ENSGT00940000154953.b #20	ENSGT00940000155249.g #19	ENSGT00940000167646	ENSGT00940000177894	ENSGT00940000163186	ENSGT00940000157622.a.a	ENSGT00940000153676.a	ENSGT01030000234566.e.b.a.a.a.a	ENSGT00940000156167.b	ENSGT00390000004697	ENSGT00940000168028	ENSGT00940000165823.d	ENSGT01040000240400.c.a.b.a.b.a.b	ENSGT00940000157122.b.b
Indian medaka	MODERN SPECIES	21	si:dkey-31g6.6 (ENSOMEG00000022307)	ENSOMEG00000022294	CBX4 (ENSOMEG00000022265)	CARD14 (ENSOMEG00000022234)	TEX2 (ENSOMEG00000022181)	ENSOMEG00000022165	AXIN2 (ENSOMEG00000022147)	ENSOMEG00000022104	ENSOMEG00000022070	slc47a2.1 (ENSOMEG00000022014)	exosc9 (ENSOMEG00000021965)	clgn (ENSOMEG00000021923) #33	scoca (ENSOMEG00000000577) #32	ENSOMEG00000021819 ##31	ENSOMEG00000021806	naa15b (ENSOMEG00000021786) #22	ENSOMEG00000021726 #25	elf2b (ENSOMEG00000021691) #20	NOCT (ENSOMEG00000021625) #19	ENSOMEG00000021602	ENSOMEG00000021588	slc43a3a (ENSOMEG00000021570)	dctd (ENSOMEG00000021534)	TENM3 (ENSOMEG00000021448)	ENSOMEG00000021371	vegfc (ENSOMEG00000021355)	ENSOMEG00000021322	ENSOMEG00000000562	ENSOMEG00000021246	ENSOMEG00000021220	ENSOMEG00000021212
Javanese ricefish	MODERN SPECIES		ENSOJAG00000006648	ENSOJAG00000006616	CARD14 (ENSOJAG00000006361)	ccdc40 (ENSOJAG00000006332)	TEX2 (ENSOJAG00000006273)	ENSOJAG00000006260	AXIN2 (ENSOJAG00000006253)	ENSOJAG00000006241	slc47a2.2 (ENSOJAG00000006223)	exosc9 (ENSOJAG00000006174)	clgn (ENSOJAG00000004056) #33	scoca (ENSOJAG00000003640) #32	ENSOJAG00000022145	ENSOJAG00000022141 ##31	ENSOJAG00000022138	naa15b (ENSOJAG00000022103) #22	RAB33B (ENSOJAG00000022099) #25	elf2b (ENSOJAG00000022092) #20	NOCT (ENSOJAG00000022083) #19	ENSOJAG00000022075	ENSOJAG00000022066	dctd (ENSOJAG00000022053)	atf1 (ENSOJAG00000022043)	TENM3 (ENSOJAG00000019297)	vegfc (ENSOJAG00000018818)	ENSOJAG00000018807	ENSOJAG00000018795	ENSOJAG00000018773	ENSOJAG00000018743	ENSOJAG00000018416	RPS6KB2 (ENSOJAG00000017187)
Oryzias_a	ANCESTRAL SPECIES	31	ENSGT00940000158604	ENSGT00390000006555	ENSGT00940000158476.a	ENSGT00940000160081.c.a	ENSGT00940000160777	ENSGT00440000035688	ENSGT00390000000463.a	ENSGT00940000157338.a	ENSGT00950000183035.b.f	ENSGT00940000163234.a.b.h.a.b	ENSGT00950000183130.A	ENSGT00950000182915.a.a.b #33	ENSGT00390000008828.fb.b #32	ENSGT00950000183201.b.a.b ##31	ENSGT00870000137155	ENSGT00950000183174.B.a.e #22	ENSGT00940000157090.h #25	ENSGT00940000154953.b #20	ENSGT00940000155249.g #19	ENSGT00940000163186	ENSGT00940000157622.a.a	ENSGT00940000153676.a	ENSGT01030000234566.e.b.a.a.a.a	ENSGT00940000156167.b	ENSGT00390000004697	ENSGT00940000153322.B.c	ENSGT00940000165823.d	ENSGT01040000240400.c.a.b.a.b.a.b	ENSGT00940000157122.b.b	ENSGT00940000155062.a	ENSGT00940000176858
Chinese medaka	MODERN SPECIES	218	SEC14L1 (ENSOSIG00000004040)	ENSOSIG00000004490	dgke (ENSOSIG00000004497)	ENSOSIG00000004500	ENSOSIG00000004503	ENSOSIG00000004508	ccdc40 (ENSOSIG00000004515)	TEX2 (ENSOSIG00000004530)	AXIN2 (ENSOSIG00000004598)	ENSOSIG00000004600	slc47a2.1 (ENSOSIG00000004605)	exosc9 (ENSOSIG00000004619)	ENSOSIG00000004632	scoca (ENSOSIG00000005334) #32	ENSOSIG00000005335	naa15b (ENSOSIG00000005351) #22	RAB33B (ENSOSIG00000007092) #25	elf2b (ENSOSIG00000007093) #20	NOCT (ENSOSIG00000007097) #19	ENSOSIG00000007098	slc43a3a (ENSOSIG00000007099)	dctd (ENSOSIG00000007102)	TENM3 (ENSOSIG00000007174)	ENSOSIG00000016828	vegfc (ENSOSIG00000016830)	ENSOSIG00000016832	ENSOSIG00000016837	ENSOSIG00000016840	ENSOSIG00000016841	ENSOSIG00000016843	RPS6KB2 (ENSOSIG00000016911)
Japanese Medaka HdrR	MODERN SPECIES		si:dkey-31g6.6 (ENSORLG00000001844)	cbx8b (ENSORLG00000028607)	CBX4 (ENSORLG00000027995)	ENSORLG00000022102	ENSORLG00000001884	ccdc40 (ENSORLG00000001899)	ENSORLG00000001916	AXIN2 (ENSORLG00000001945)	ENSORLG00000025638	slc47a2.2 (ENSORLG00000001967)	exosc9 (ENSORLG00000001989)	clgn (ENSORLG00000002011) #33	scoca (ENSORLG00000002015) #32	ENSORLG00000028392 ##31	ENSORLG00000025469	naa15b (ENSORLG00000002063) #22	ENSORLG00000002071 #25	elf2b (ENSORLG00000002091) #20	NOCT (ENSORLG00000002100) #19	ENSORLG00000023189	slc43a3a (ENSORLG00000002116)	dctd (ENSORLG00000002127)	ENSORLG00000002165	vegfc (ENSORLG00000002180)	ENSORLG00000029382	ENSORLG00000002191	ENSORLG00000022778	ENSORLG00000002209	ENSORLG00000028979	ENSORLG00000002249	ENSORLG00000023252
Ovalentaria_B	ANCESTRAL SPECIES	4	ENSGT00440000035688	ENSGT00390000000463.a	ENSGT00950000182933.B.b	ENSGT00990000203866	ENSGT00530000063725.o	ENSGT00940000157338.a	ENSGT00950000183035.b.f	ENSGT00940000163234.a.b.h.a.a.b	ENSGT00940000163234.a.b.h.a.b	ENSGT00940000163454.a.a.a.a	ENSGT00940000163454.a.a.b	ENSGT00950000183130.A	ENSGT00950000182915.a.a.b #33	ENSGT00390000008828.fb.b #32	ENSGT00950000183201.b.a.b ##31	ENSGT00950000183174.B.a.e #22	ENSGT00940000157090.h #25	ENSGT00990000203987	ENSGT00940000154953.b #20	ENSGT00940000155249.g #19	ENSGT00940000177894	ENSGT00940000156045.b	ENSGT00940000171111.e	ENSGT00390000003068	ENSGT00530000063359.B	ENSGT00940000165124.d	ENSGT00940000164963.c.b	ENSGT00940000158505.n.b	ENSGT00950000182932.B.a	ENSGT01020000230338.a.a	ENSGT00940000154390.G.b.d
Cichlidae	ANCESTRAL SPECIES	3	ENSGT00940000160777	ENSGT00440000035688	ENSGT00390000000463.a	ENSGT00950000182933.B.b	ENSGT00990000203866	ENSGT00530000063725.o	ENSGT00940000157338.a	ENSGT00950000183035.b.f	ENSGT00940000163234.a.b.h.a.a.b	ENSGT00940000163234.a.b.h.a.a.a	ENSGT00940000163454.a.a.b	ENSGT00950000183130.A	ENSGT00950000182915.a.a.b #33	ENSGT00390000008828.fb.b #32	ENSGT00950000183201.b.a.b ##31	ENSGT00950000183174.B.a.e #22	ENSGT00940000157090.h #25	ENSGT00990000203987	ENSGT00940000154953.b #20	ENSGT00940000155249.g #19	ENSGT00940000177894
Midas cichlid	MODERN SPECIES	605												exosc9 (ENSACIG00000013514)	clgn (ENSACIG00000013370) #33	scoca (ENSACIG00000013334) #32	ENSACIG00000013330 ##31	naa15b (ENSACIG00000013277) #22	ENSACIG00000013119 #25	elf2b (ENSACIG00000013086) #20	NOCT (ENSACIG00000013054) #19
Pseudocrenilabrinae	ANCESTRAL SPECIES	3	ENSGT00950000182933.B.b	ENSGT00990000203866	ENSGT00530000063725.o.t.b.a	ENSGT00530000063725.o.t.b.b	ENSGT00530000063725.o.t.a.a	ENSGT00530000063725.o.t.a.b	ENSGT00940000157338.a	ENSGT00950000183035.b.f	ENSGT00940000163234.a.b.h.a.a.b	ENSGT00940000163234.a.b.h.a.a.a	ENSGT00940000163454.a.a.b	ENSGT00950000183130.A	ENSGT00950000182915.a.a.b #33	ENSGT00390000008828.fb.b #32	ENSGT00950000183201.b.a.b ##31	ENSGT00950000183174.B.a.e #22	ENSGT00940000157090.h #25	ENSGT00990000203987	ENSGT00940000154953.b #20	ENSGT00940000155249.g #19	ENSGT00940000177894	ENSGT00940000160081.c.a	ENSGT00940000158476.a	ENSGT00390000006555	ENSGT00940000158604	ENSGT00940000164979.f.b	ENSGT00940000164979.f.a.j	ENSGT00940000164979.f.a.i	ENSGT00940000165433	ENSGT00940000155386.a	ENSGT00550000075186
Nile tilapia	MODERN SPECIES	18	TEX2 (ENSONIG00000003436)	ENSONIG00000020622	ENSONIG00000003433	ENSONIG00000003432	ENSONIG00000003431	ENSONIG00000003430	AXIN2 (ENSONIG00000003426)	ENSONIG00000041816	ENSONIG00000003419	ENSONIG00000003414	ENSONIG00000042236	ENSONIG00000003408	exosc9 (ENSONIG00000003399)	clgn (ENSONIG00000003397) #33	scoca (ENSONIG00000028385) #32	naa15b (ENSONIG00000003372) #22	ENSONIG00000003367 #25	elf2b (ENSONIG00000003360) #20	NOCT (ENSONIG00000038157) #19	ENSONIG00000036749	slc43a3a (ENSONIG00000003351)	ENSONIG00000036108	CBX4 (ENSONIG00000028804)	CBX8 (ENSONIG00000034178)	si:dkey-31g6.6 (ENSONIG00000003344)	dgke (ENSONIG00000042856)	ENSONIG00000042510	trim25 (ENSONIG00000003338)	trim25 (ENSONIG00000003334)	ENSONIG00000003333	SEC14L1 (ENSONIG00000003331)
Pseudocrenilabrinae_A	ANCESTRAL SPECIES	5	ENSGT00950000182933.B.b	ENSGT00990000203866	ENSGT00530000063725.o.t.b.a	ENSGT00530000063725.o.t.b.b	ENSGT00530000063725.o.t.a.a	ENSGT00530000063725.o.t.a.b	ENSGT00940000157338.a	ENSGT00950000183035.b.f	ENSGT00940000163234.a.b.h.a.a.b	ENSGT00940000163234.a.b.h.a.a.a	ENSGT00940000163454.a.a.b	ENSGT00950000183130.A	ENSGT00950000182915.a.a.b #33	ENSGT00390000008828.fb.b #32	ENSGT00950000183201.b.a.b ##31	ENSGT00950000183174.B.a.e #22	ENSGT00940000157090.h #25	ENSGT00990000203987	ENSGT00940000154953.b #20	ENSGT00940000155249.g #19	ENSGT00940000163186	ENSGT00940000157622.a.a	ENSGT00940000160081.c.a	ENSGT00940000158476.a	ENSGT00390000006555	ENSGT00940000158604	ENSGT00940000164979.f.b	ENSGT00940000164979.f.a.j	ENSGT00940000164979.f.a.i	ENSGT00940000165433	ENSGT00940000155386.a
Lyretail cichlid	MODERN SPECIES	355											ENSNBRG00000019279	exosc9 (ENSNBRG00000019108)	clgn (ENSNBRG00000019015) #33	scoca (ENSNBRG00000018991) #32	ENSNBRG00000018982 ##31	naa15b (ENSNBRG00000018238) #22	ENSNBRG00000017996 #25	elf2b (ENSNBRG00000017978) #20	NOCT (ENSNBRG00000017964) #19	ENSNBRG00000017952	slc43a3a (ENSNBRG00000017894)	ENSNBRG00000017865	ENSNBRG00000017840	si:dkey-31g6.6 (ENSNBRG00000017831)	dgke (ENSNBRG00000017802)	trim25 (ENSNBRG00000017765)	ENSNBRG00000017746	ENSNBRG00000017731	ENSNBRG00000017721	ENSNBRG00000017706	ENSNBRG00000017698
Haplochromini	ANCESTRAL SPECIES	3	ENSGT00390000000463.a	ENSGT00950000182933.B.b	ENSGT00530000063725.o.t.b.a.b.a.a	ENSGT00530000063725.o.t.a.a	ENSGT00530000063725.o.t.a.b	ENSGT00940000157338.a	ENSGT00950000183035.b.f	ENSGT00940000163234.a.b.h.a.a.b	ENSGT00940000163234.a.b.h.a.a.a.c	ENSGT00940000163234.a.b.h.a.a.a.d	ENSGT00940000163454.a.a.b	ENSGT00950000183130.A	ENSGT00950000182915.a.a.b #33	ENSGT00390000008828.fb.b #32	ENSGT00950000183201.b.a.b ##31	ENSGT00950000183174.B.a.e #22	ENSGT00940000157090.h #25	ENSGT00990000203987	ENSGT00940000154953.b #20	ENSGT00940000155249.g #19	ENSGT00940000163186	ENSGT00940000157622.a.a	ENSGT00940000160081.c.a	ENSGT00940000158476.a	ENSGT00390000006555	ENSGT00940000158604	ENSGT00940000164979.f.b.a.a	ENSGT00940000164979.f.a.j	ENSGT00940000164979.f.a.i	ENSGT00940000165433	ENSGT00940000155386.a
Burton s mouthbrooder	MODERN SPECIES	297											ENSHBUG00000001825	exosc9 (ENSHBUG00000001818)	clgn (ENSHBUG00000001792) #33	scoca (ENSHBUG00000001769) #32	ENSHBUG00000001759 ##31	naa15b (ENSHBUG00000001746) #22	ENSHBUG00000001714 #25	elf2b (ENSHBUG00000001702) #20	NOCT (ENSHBUG00000001687) #19	ENSHBUG00000001679	slc43a3a (ENSHBUG00000001670)	CBX4 (ENSHBUG00000001658)	cbx8b (ENSHBUG00000001652)	si:dkey-31g6.6 (ENSHBUG00000001646)	dgke (ENSHBUG00000001637)	ENSHBUG00000001629	trim25 (ENSHBUG00000000937)	trim25 (ENSHBUG00000001614)	ENSHBUG00000001603	SEC14L1 (ENSHBUG00000001582)	anapc11 (ENSHBUG00000001555)
Haplochromini_A	ANCESTRAL SPECIES	2	ENSGT00950000182933.B.b	ENSGT00530000063725.o.t.b.a.b.a.a	ENSGT00530000063725.o.t.a.a	ENSGT00530000063725.o.t.a.b	ENSGT00940000157338.a	ENSGT00950000184095	ENSGT00950000183035.b.f	ENSGT00940000163234.a.b.h.a.a.b	ENSGT00940000163234.a.b.h.a.a.a.c	ENSGT00940000163234.a.b.h.a.a.a.d	ENSGT00940000163454.a.a.b	ENSGT00950000183130.A	ENSGT00950000182915.a.a.b #33	ENSGT00390000008828.fb.b #32	ENSGT00950000183201.b.a.b ##31	ENSGT00950000183174.B.a.e #22	ENSGT00940000157090.h #25	ENSGT00990000203987	ENSGT00940000154953.b #20	ENSGT00940000155249.g #19	ENSGT00940000163186	ENSGT00940000157622.a.a	ENSGT00940000160081.c.a	ENSGT00940000158476.a	ENSGT00390000006555	ENSGT00940000158604	ENSGT00940000164979.f.b.a.a	ENSGT00940000164979.f.a.j	ENSGT00940000164979.f.a.i	ENSGT00940000165433	ENSGT00940000155386.a
Haplochromini_B	ANCESTRAL SPECIES	23	ENSGT00950000182933.B.b	ENSGT00530000063725.o.t.b.a.b.b	ENSGT00530000063725.o.t.a.a	ENSGT00530000063725.o.t.a.b	ENSGT00940000157338.a	ENSGT00950000184095	ENSGT00950000183035.b.f	ENSGT00940000163234.a.b.h.a.a.b	ENSGT00940000163234.a.b.h.a.a.a.c	ENSGT00940000163234.a.b.h.a.a.a.d	ENSGT00940000163454.a.a.b	ENSGT00950000183130.A	ENSGT00950000182915.a.a.b #33	ENSGT00390000008828.fb.b #32	ENSGT00950000183201.b.a.b ##31	ENSGT00950000183174.B.a.e #22	ENSGT00940000157090.h #25	ENSGT00940000154953.b #20	ENSGT00940000155249.g #19	ENSGT00940000163186	ENSGT00940000157622.a.a	ENSGT00940000160081.c.a	ENSGT00940000158476.a	ENSGT00390000006555	ENSGT00940000158604	ENSGT00940000164979.f.b.a.a	ENSGT00940000164979.f.a.j	ENSGT00940000164979.f.a.i	ENSGT00940000165433	ENSGT00940000155386.a	ENSGT00550000075186
Zebra mbuna	MODERN SPECIES	1109	ENSMZEG00005011273	PRF1 (ENSMZEG00005011276)	ENSMZEG00005011281	AXIN2 (ENSMZEG00005011288)	ENSMZEG00005011302	ENSMZEG00005011308	ENSMZEG00005011323	ENSMZEG00005011339	ENSMZEG00005011367	ENSMZEG00005011438	ENSMZEG00005011448	exosc9 (ENSMZEG00005011461)	clgn (ENSMZEG00005011482) #33	scoca (ENSMZEG00005011510) #32	ENSMZEG00005011533 ##31	naa15b (ENSMZEG00005011551) #22	ENSMZEG00005011586 #25	elf2b (ENSMZEG00005011602) #20	NOCT (ENSMZEG00005011616) #19	ENSMZEG00005011625	slc43a3a (ENSMZEG00005011638)	CBX4 (ENSMZEG00005011680)	cbx8b (ENSMZEG00005011686)	si:dkey-31g6.6 (ENSMZEG00005011695)	dgke (ENSMZEG00005011708)	ENSMZEG00005011721	trim25 (ENSMZEG00005011727)	trim25 (ENSMZEG00005011739)	ENSMZEG00005011764	SEC14L1 (ENSMZEG00005011816)	anapc11 (ENSMZEG00005011867)
Eastern happy	MODERN SPECIES	18	ENSACLG00000012258	PRF1 (ENSACLG00000012116)	ENSACLG00000012017	ENSACLG00000011985	AXIN2 (ENSACLG00000011830)	ENSACLG00000011809	ENSACLG00000011751	ENSACLG00000011732	ENSACLG00000011701	ENSACLG00000011497	ENSACLG00000011487	exosc9 (ENSACLG00000011471)	clgn (ENSACLG00000011446) #33	scoca (ENSACLG00000011441) #32	ENSACLG00000011431 ##31	naa15b (ENSACLG00000010983) #22	ENSACLG00000010965 #25	elf2b (ENSACLG00000010872) #20	NOCT (ENSACLG00000010843) #19	ENSACLG00000010825	slc43a3a (ENSACLG00000010757)	CBX4 (ENSACLG00000010604)	cbx8b (ENSACLG00000010589)	si:dkey-31g6.6 (ENSACLG00000010576)	dgke (ENSACLG00000010534)	ENSACLG00000010517	trim25 (ENSACLG00000010499)	trim25 (ENSACLG00000010425)	ENSACLG00000010381	SEC14L1 (ENSACLG00000010354)	anapc11 (ENSACLG00000010349)
P. nyererei	MODERN SPECIES	370	ENSPNYG00000004302	ENSPNYG00000004244	ENSPNYG00000004224	ENSPNYG00000004210	AXIN2 (ENSPNYG00000004181)	ENSPNYG00000004161	ENSPNYG00000004060	ENSPNYG00000003954	ENSPNYG00000003868	ENSPNYG00000003730	ENSPNYG00000003702	ENSPNYG00000003693	clgn (ENSPNYG00000003640) #33	scoca (ENSPNYG00000003623) #32	ENSPNYG00000003608 ##31	naa15b (ENSPNYG00000003539) #22	ENSPNYG00000003511 #25	ENSPNYG00000003499	elf2b (ENSPNYG00000003464) #20	NOCT (ENSPNYG00000003447) #19	ENSPNYG00000003434	slc43a3a (ENSPNYG00000003389)	ENSPNYG00000003370	CBX4 (ENSPNYG00000003363)	cbx8b (ENSPNYG00000003357)	si:dkey-31g6.6 (ENSPNYG00000003338)	dgke (ENSPNYG00000003302)	ENSPNYG00000003287	trim25 (ENSPNYG00000003275)	trim25 (ENSPNYG00000003210)	ENSPNYG00000003165
Pomacentridae	ANCESTRAL SPECIES	85																ENSGT00950000183174.B.a.e #22	ENSGT00550000075186	ENSGT00940000159603.b	ENSGT00940000157351	ENSGT01070000253837.c	ENSGT00640000091541	ENSGT01060000248591.a.a.b.a.b	ENSGT00390000011880.b	ENSGT00940000176115	ENSGT00940000168473	ENSGT00940000155386.a	ENSGT00940000165433	ENSGT00940000164979.f.a	ENSGT00940000164979.f.b	ENSGT00940000158604	ENSGT00390000018868.B.b
Bicolor damselfish	MODERN SPECIES	2351																naa15b (ENSSPAG00000014561) #22	anapc11 (ENSSPAG00000014624)
Pomacentridae_A	ANCESTRAL SPECIES	13	ENSGT00940000160777	ENSGT00440000035688	ENSGT00390000000463.a	ENSGT00950000182933.B.b	ENSGT00530000063725.o	ENSGT00940000157338.a	ENSGT00950000183035.b.f	ENSGT00940000163234.a.b.h.a.a.b	ENSGT00940000163234.a.b.h.a.b	ENSGT00940000163454.a.a.a.a	ENSGT00940000163454.a.a.b	ENSGT00950000183130.A	ENSGT00950000182915.a.a.b #33	ENSGT00390000008828.fb.b #32	ENSGT00950000183201.b.a.b ##31	ENSGT00950000183174.B.a.e #22	ENSGT00550000075186	ENSGT00940000159603.b	ENSGT00940000157351	ENSGT01070000253837.c	ENSGT00640000091541	ENSGT01060000248591.a.a.b.a.b	ENSGT00390000011880.b	ENSGT00940000176115	ENSGT00940000168473	ENSGT00940000155386.a	ENSGT00940000165433	ENSGT00940000164979.f.a.e	ENSGT00940000164979.f.b	ENSGT00940000164979.f.a.f	ENSGT00940000158604
Spiny chromis	MODERN SPECIES	368							ENSAPOG00000001187	ENSAPOG00000001188	ENSAPOG00000001192	ENSAPOG00000001194	ENSAPOG00000001198	exosc9 (ENSAPOG00000001202)	clgn (ENSAPOG00000001207) #33	scoca (ENSAPOG00000001211) #32	ENSAPOG00000001214 ##31	naa15b (ENSAPOG00000001222) #22	anapc11 (ENSAPOG00000001227)	ppp1r27b (ENSAPOG00000000006)	p4hb (ENSAPOG00000001235)
Amphiprion	ANCESTRAL SPECIES		ENSGT00940000160777	ENSGT00440000035688	ENSGT00390000000463.a	ENSGT00950000182933.B.b	ENSGT00530000063725.o	ENSGT00940000157338.a	ENSGT00950000183035.b.f	ENSGT00940000163234.a.b.h.a.a.b	ENSGT00940000163234.a.b.h.a.b	ENSGT00940000163454.a.a.a.a	ENSGT00940000163454.a.a.b.g	ENSGT00950000183130.A	ENSGT00950000182915.a.a.b #33	ENSGT00390000008828.fb.b #32	ENSGT00950000183201.b.a.b ##31	ENSGT00950000183174.B.a.e #22	ENSGT00550000075186	ENSGT00940000159603.b	ENSGT00940000157351	ENSGT01070000253837.c	ENSGT00640000091541	ENSGT01060000248591.a.a.b.a.b	ENSGT00390000011880.b	ENSGT00940000176115	ENSGT00940000168473	ENSGT00940000155386.a	ENSGT00940000165433	ENSGT00940000164979.f.a.e	ENSGT00940000164979.f.a.f	ENSGT00940000158604	ENSGT00390000018868.B.b
Orange clownfish	MODERN SPECIES	17	ENSAPEG00000015268	ccdc40 (ENSAPEG00000015226)	TEX2 (ENSAPEG00000015194)	ENSAPEG00000015181	prf1.2 (ENSAPEG00000015003)	AXIN2 (ENSAPEG00000014887)	ENSAPEG00000014812	ENSAPEG00000014650	ENSAPEG00000014483	ENSAPEG00000014464	ENSAPEG00000014452	exosc9 (ENSAPEG00000014416)	clgn (ENSAPEG00000014377) #33	scoca (ENSAPEG00000014359) #32	ENSAPEG00000014342 ##31	naa15b (ENSAPEG00000014226) #22	ENSAPEG00000014195	anapc11 (ENSAPEG00000014187)	ppp1r27b (ENSAPEG00000014175)	p4hb (ENSAPEG00000014138)	ENSAPEG00000014071	RPTOR (ENSAPEG00000013927)	NPTX1 (ENSAPEG00000013867)	ENSAPEG00000013817	ENSAPEG00000013796	SEC14L1 (ENSAPEG00000013704)	ENSAPEG00000013625	trim25 (ENSAPEG00000013603)	ENSAPEG00000013598	dgke (ENSAPEG00000013543)	ENSAPEG00000013527
Clown anemonefish	DUPLICATION
Clown anemonefish	MODERN SPECIES	2459															ENSAOCG00000001542 ##31	naa15b (ENSAOCG00000020980) #22
Clown anemonefish	MODERN SPECIES	1635	ENSAOCG00000023147	ccdc40 (ENSAOCG00000023211)	TEX2 (ENSAOCG00000023232)	ENSAOCG00000023237	prf1.2 (ENSAOCG00000023328)	AXIN2 (ENSAOCG00000023394)	ENSAOCG00000023430	ENSAOCG00000023506	ENSAOCG00000023532	ENSAOCG00000023550	ENSAOCG00000023575	exosc9 (ENSAOCG00000023602)	clgn (ENSAOCG00000023639) #33	scoca (ENSAOCG00000023654) #32	ENSAOCG00000023665 ##31	naa15b (ENSAOCG00000023893) #22	ENSAOCG00000023954
Percomorphaceae_C	ANCESTRAL SPECIES	3	ENSGT00940000158476.a	ENSGT00940000160081.c.a	ENSGT00940000160777	ENSGT00440000035688	ENSGT00390000000463.a	ENSGT00950000182933.B.b	ENSGT00940000157338.a	ENSGT00950000183035.b.f	ENSGT00940000163234.a.b.h.a.a.b	ENSGT00940000163454.a.a.a.a	ENSGT00940000163454.a.a.b	ENSGT00950000183130.A	ENSGT00950000182915.a.a.b #33	ENSGT00390000008828.fb.b #32	ENSGT00950000183201.b.a.b ##31	ENSGT00950000183174.B.a.e #22	ENSGT00940000157090.h #25	ENSGT00990000203987	ENSGT00940000154953.b #20	ENSGT00940000155249.g #19	ENSGT00940000167646	ENSGT00940000158431.a.a.a.a.a.a.d.b.a.b	ENSGT00940000157622.a.a	ENSGT01100000263556.a.a.q.d	ENSGT01020000230338.a.b.a.e	ENSGT00940000157622.a.b	ENSGT00940000156045.b	ENSGT00940000171111	ENSGT00390000003068	ENSGT00530000063359.B	ENSGT00940000165124.d
Percomorphaceae_D	ANCESTRAL SPECIES		ENSGT00940000160081.c.a	ENSGT00940000160777	ENSGT00440000035688	ENSGT00390000000463.a	ENSGT00950000182933.B.b	ENSGT00530000063725.o	ENSGT00940000157338.a	ENSGT00950000183035.b.f	ENSGT00940000163234.a.b.h.a.a.b	ENSGT00940000163454.a.a.a.a	ENSGT00940000163454.a.a.b	ENSGT00950000183130.A	ENSGT00950000182915.a.a.b #33	ENSGT00390000008828.fb.b #32	ENSGT00950000183201.b.a.b ##31	ENSGT00950000183174.B.a.e #22	ENSGT00940000157090.h #25	ENSGT00940000154953.b #20	ENSGT00940000155249.g #19	ENSGT00940000167646	ENSGT00940000158431.a.a.a.a.a.a.d.b.a.b	ENSGT00940000157622.a.a	ENSGT01100000263556.a.a.q.d	ENSGT01020000230338.a.b.a.e	ENSGT00940000157622.a.b	ENSGT00940000156045.b	ENSGT00940000171111	ENSGT00390000003068	ENSGT00530000063359.B	ENSGT00940000165124.d	ENSGT00940000164963.c.b
Anabantaria	ANCESTRAL SPECIES	1	ENSGT00940000158476.a	ENSGT00940000160081.c.a	ENSGT00940000160777	ENSGT00440000035688	ENSGT00390000000463.a	ENSGT00950000182933.B.b	ENSGT00530000063725.o	ENSGT00940000157338.a	ENSGT00950000183035.b.f	ENSGT00940000163234.a.b.h.a.a.b	ENSGT00940000163454.a.a.b	ENSGT00950000183130.A	ENSGT00950000182915.a.a.b #33	ENSGT00390000008828.fb.b #32	ENSGT00950000183201.b.a.b ##31	ENSGT00950000183174.B.a.e #22	ENSGT00940000157090.h #25	ENSGT00940000154953.b #20	ENSGT00940000155249.g #19	ENSGT00940000167646	ENSGT00940000158431.a.a.a.a.a.a.d.b.a.b	ENSGT00940000177894	ENSGT00940000163186	ENSGT00940000157622.a.a	ENSGT00940000157622.a.b	ENSGT00940000156045.b	ENSGT00390000003068	ENSGT00530000063359.B	ENSGT00940000165124.d	ENSGT00940000164963.c.b	ENSGT00940000158505.n.b
Zig-zag eel	MODERN SPECIES		ENSMAMG00000006067	ENSMAMG00000006075	ccdc40 (ENSMAMG00000006097)	ENSMAMG00000006113	ENSMAMG00000006162	ENSMAMG00000026407	ENSMAMG00000006170	ENSMAMG00000006234	ENSMAMG00000006274	ENSMAMG00000006369	ENSMAMG00000006444	ENSMAMG00000006465	clgn (ENSMAMG00000006473) #33	ENSMAMG00000026130 #32	ENSMAMG00000006510 ##31	ENSMAMG00000006525 #22	ENSMAMG00000027120 #25	ENSMAMG00000006660 #20	ENSMAMG00000006732 #19	ENSMAMG00000006755	ENSMAMG00000006770	slc43a3a (ENSMAMG00000006783)	ENSMAMG00000006799	timm10 (ENSMAMG00000006879)	unc93b1 (ENSMAMG00000006883)	ENSMAMG00000006889	rtn4rl2a (ENSMAMG00000026888)	ENSMAMG00000006942	ENSMAMG00000006955	ENSMAMG00000007011	ENSMAMG00000024949
Anabantoidei	ANCESTRAL SPECIES		ENSGT00940000158476.a	ENSGT00940000160081.c.a	ENSGT00940000160777	ENSGT00440000035688	ENSGT00390000000463.a	ENSGT00950000182933.B.b	ENSGT00530000063725.o	ENSGT00940000157338.a	ENSGT00950000183035.b.f	ENSGT00940000163234.a.b.h.a.a.b	ENSGT00940000163454.a.a.b	ENSGT00950000183130.A	ENSGT00950000182915.a.a.b #33	ENSGT00390000008828.fb.b #32	ENSGT00950000183201.b.a.b ##31	ENSGT00950000183174.B.a.e #22	ENSGT00940000157090.h #25	ENSGT00940000154953.b #20	ENSGT00940000155249.g #19	ENSGT00940000167646	ENSGT00940000158431.a.a.a.a.a.a.d.b.a.b	ENSGT00940000157622.a.a	ENSGT00940000157622.a.b	ENSGT00940000156045.b	ENSGT00390000003068	ENSGT00530000063359.B	ENSGT00940000165124.d	ENSGT00940000164963.c.b	ENSGT00940000158505.n.b	ENSGT01020000230338.a.a	ENSGT00940000154390.G.b.d
Climbing perch	MODERN SPECIES		ENSATEG00000023394	ENSATEG00000023385	ENSATEG00000025779	ENSATEG00000029006	ENSATEG00000023259	ENSATEG00000023341	ENSATEG00000023147	ENSATEG00000028282	ENSATEG00000023123	ENSATEG00000023081	ENSATEG00000023052	ENSATEG00000023032	clgn (ENSATEG00000023020) #33	ENSATEG00000023017 #32	ENSATEG00000023015 ##31	ENSATEG00000023002 #22	ENSATEG00000022993 #25	ENSATEG00000022983 #20	ENSATEG00000022975 #19	ENSATEG00000022977	ENSATEG00000022972	slc43a3a (ENSATEG00000022954)	slc43a3a (ENSATEG00000022938)	ENSATEG00000022886	timm10 (ENSATEG00000022871)	unc93b1 (ENSATEG00000022857)	ENSATEG00000022853	ENSATEG00000012075	rtn4rl2a (ENSATEG00000030005)	ENSATEG00000022793	ENSATEG00000027467
Siamese fighting fish	MODERN SPECIES		abca1a (ENSBSLG00000015778)	SGCZ (ENSBSLG00000015880)	tusc3 (ENSBSLG00000015889)	exosc9 (ENSBSLG00000015906)	ENSBSLG00000015919	tppp2 (ENSBSLG00000015921)	ENSBSLG00000015925	hand2 (ENSBSLG00000015931)	fbxo8 (ENSBSLG00000015936)	ENSBSLG00000015947	ENSBSLG00000015995	ENSBSLG00000016004	clgn (ENSBSLG00000016013) #33	scoca (ENSBSLG00000016277) #32	ENSBSLG00000016589 ##31	naa15b (ENSBSLG00000016893) #22	ENSBSLG00000018100 #25	elf2b (ENSBSLG00000018120) #20	NOCT (ENSBSLG00000018185) #19	slc43a3a (ENSBSLG00000018273)	slc43a3a (ENSBSLG00000018314)	CTNND1 (ENSBSLG00000018364)	timm10 (ENSBSLG00000018685)	unc93b1 (ENSBSLG00000018692)	ENSBSLG00000018873	ENSBSLG00000018890	rtn4rl2a (ENSBSLG00000018920)	ENSBSLG00000018938	cabp2a (ENSBSLG00000018954)	PTGDR2 (ENSBSLG00000018980)	ENSBSLG00000018990
Carangaria	ANCESTRAL SPECIES		ENSGT00940000160081.c.a	ENSGT00940000160777	ENSGT00440000035688	ENSGT00390000000463.a	ENSGT00950000182933.B.b	ENSGT00530000063725.o	ENSGT00940000157338.a	ENSGT00950000183035.b.f	ENSGT00940000163234.a.b.h.a.a.b	ENSGT00940000163454.a.a.a.a	ENSGT00940000163454.a.a.b	ENSGT00950000183130.A	ENSGT00950000182915.a.a.b #33	ENSGT00390000008828.fb.b #32	ENSGT00950000183201.b.a.b ##31	ENSGT00950000183174.B.a.e #22	ENSGT00940000157090.h #25	ENSGT00940000154953.b #20	ENSGT00940000155249.g #19	ENSGT00940000167646	ENSGT00940000157622.a.a	ENSGT00940000157622.a.b	ENSGT01100000263556.a.a.q.d	ENSGT01020000230338.a.b.a.e	ENSGT00940000156045.b	ENSGT00940000171111	ENSGT00390000003068	ENSGT00530000063359.B	ENSGT00940000165124.d	ENSGT00940000164963.c.b	ENSGT00940000158505.n.b
Pleuronectoidei	ANCESTRAL SPECIES	22	ENSGT00940000160081.c.a	ENSGT00940000160777	ENSGT00440000035688	ENSGT00390000000463.a	ENSGT00950000182933.B.b	ENSGT00940000157338.a	ENSGT00950000183035.b.f	ENSGT00940000163234.a.b.h.a.a.b	ENSGT00940000163234.a.b.h.a.b	ENSGT00940000163454.a.a.a.a	ENSGT00940000163454.a.a.b	ENSGT00950000183130.A	ENSGT00950000182915.a.a.b #33	ENSGT00390000008828.fb.b #32	ENSGT00950000183201.b.a.b ##31	ENSGT00950000183174.B.a.e #22	ENSGT00940000157090.h #25	ENSGT00940000154953.b #20	ENSGT00940000155249.g #19	ENSGT00940000167646	ENSGT00940000158431.a.a.a.a.a.a.d.b.a.b	ENSGT00940000156045.b	ENSGT00940000171111	ENSGT00390000003068	ENSGT00530000063359.B	ENSGT00940000164963.c.b	ENSGT00940000158505.n.b	ENSGT00950000182932.B.a	ENSGT01020000230338.a.a	ENSGT00940000164685.a	ENSGT00940000162009.b
Turbot	MODERN SPECIES	20	si:dkey-31g6.6 (ENSSMAG00000034251)	cbx8b (ENSSMAG00000011628)	ENSSMAG00000011638	ENSSMAG00000011645	ENSSMAG00000011741	ENSSMAG00000011757	ENSSMAG00000011766	ENSSMAG00000011817	ENSSMAG00000011864	ENSSMAG00000011996	ENSSMAG00000012019	clgn (ENSSMAG00000012101) #33	ENSSMAG00000012071	scoca (ENSSMAG00000025829) #32	ENSSMAG00000012133 ##31	ENSSMAG00000012140 #22	ENSSMAG00000037831 #25	ENSSMAG00000012181 #20	ENSSMAG00000012233 #19	ENSSMAG00000012252	ENSSMAG00000012277	ENSSMAG00000034788	ENSSMAG00000012484	ENSSMAG00000012492	wdr17 (ENSSMAG00000012503)	ENSSMAG00000034692	ENSSMAG00000012602	ENSSMAG00000032933	ENSSMAG00000012638	ENSSMAG00000037754	ENSSMAG00000012739
Tongue sole	MODERN SPECIES	19	CBX4 (ENSCSEG00000014919)	ENSCSEG00000014828	ccdc40 (ENSCSEG00000014792)	TEX2 (ENSCSEG00000014780)	ENSCSEG00000014774	AXIN2 (ENSCSEG00000014744)	ENSCSEG00000014713	ENSCSEG00000014708	ENSCSEG00000014681	ENSCSEG00000014669	ENSCSEG00000014657	scoca (ENSCSEG00000014649) #32	clgn (ENSCSEG00000014614) #33	exosc9 (ENSCSEG00000014567)	ENSCSEG00000014560 ##31	naa15b (ENSCSEG00000014510) #22	RAB33B (ENSCSEG00000014479) #25	elf2b (ENSCSEG00000014461) #20	NOCT (ENSCSEG00000014449) #19	ENSCSEG00000014445	TNS4 (ENSCSEG00000014434)	ccr7 (ENSCSEG00000014429)	SMARCE1 (ENSCSEG00000014417)	IGFBP4 (ENSCSEG00000014412)	ENSCSEG00000014400	ENSCSEG00000014374	nfil3-5 (ENSCSEG00000014363)	ENSCSEG00000014349	odad3 (ENSCSEG00000014343)	SLC44A2 (ENSCSEG00000014299)	gcdha (ENSCSEG00000014268)
Carangaria_A	ANCESTRAL SPECIES	24										ENSGT00940000163454.a.a.a.a	ENSGT00940000163454.a.a.b	ENSGT00950000183130.A	ENSGT00950000182915.a.a.b #33	ENSGT00390000008828.fb.b #32	ENSGT00950000183201.b.a.b ##31	ENSGT00950000183174.B.a.e #22	ENSGT00940000157090.h #25	ENSGT00940000154953.b #20	ENSGT00940000155249.g #19	ENSGT00940000157622.a.a	ENSGT01100000263556.a.a.q.d	ENSGT01020000230338.a.b.a.e	ENSGT00940000157622.a.b	ENSGT00940000156045.b	ENSGT00940000171111	ENSGT00390000003068	ENSGT00530000063359.B	ENSGT00940000165124.d	ENSGT00940000164963.c.b	ENSGT00940000158505.n.b	ENSGT00950000182932.B.a
Barramundi perch	MODERN SPECIES	355									ENSLCAG00010011057	ENSLCAG00010011072	ENSLCAG00010011073	exosc9 (ENSLCAG00010011076)	clgn (ENSLCAG00010011085) #33	scoca (ENSLCAG00010011097) #32	ENSLCAG00010011102 ##31	naa15b (ENSLCAG00010011132) #22	ENSLCAG00010011240 #25	elf2b (ENSLCAG00010011243) #20	NOCT (ENSLCAG00010011249) #19	ENSLCAG00010011251	slc43a3a (ENSLCAG00010011254)	ENSLCAG00010011259	CTNND1 (ENSLCAG00010011365)	ENSLCAG00010011883	timm10 (ENSLCAG00010011889)	unc93b1 (ENSLCAG00010011900)	ENSLCAG00010011926	ENSLCAG00010011931	rtn4rl2a (ENSLCAG00010011941)	ENSLCAG00010011946	ENSLCAG00010011948
Seriola	ANCESTRAL SPECIES	11	ENSGT00390000015863	ENSGT00940000160151	ENSGT00940000156865.a	ENSGT00390000006009.b	ENSGT00390000003817	ENSGT00940000161361	ENSGT00940000161195.a.b	ENSGT00940000154277.b.a	ENSGT00940000163234.a.b.h.a.a.b	ENSGT00940000163454.a.a.a.a	ENSGT00940000163454.a.a.b	ENSGT00950000183130.A	ENSGT00990000204378	ENSGT00390000008828.fb.b #32	ENSGT00950000183201.b.a.b ##31	ENSGT00950000183174.B.a.e #22	ENSGT00950000183035.b.f	ENSGT00940000157338.a	ENSGT00530000063725.o.x.a.b	ENSGT00530000063725.o.x.a.a	ENSGT00530000063725.o.x.b	ENSGT00950000182933.B.b	ENSGT00390000000463.a	ENSGT00440000035688	ENSGT00940000160777	ENSGT00940000160081.c.a	ENSGT00940000158476.a	ENSGT00390000006555	ENSGT00940000158604	ENSGT00940000164979.f.b	ENSGT00940000164979.f.a
Greater amberjack	MODERN SPECIES	20	ENSSDUG00000002042	TOM1 (ENSSDUG00000002052)	ENSSDUG00000002077	get3 (ENSSDUG00000002155)	BEST2 (ENSSDUG00000002175)	JUNB (ENSSDUG00000002207)	prdx2 (ENSSDUG00000002224)	ENSSDUG00000002244	ENSSDUG00000002258	ENSSDUG00000002277	ENSSDUG00000002289	exosc9 (ENSSDUG00000002313)	ENSSDUG00000002378	scoca (ENSSDUG00000002404) #32	ENSSDUG00000002425 ##31	naa15b (ENSSDUG00000002446) #22	ENSSDUG00000002520	AXIN2 (ENSSDUG00000002553)	ENSSDUG00000002640	ENSSDUG00000002802	ENSSDUG00000003053	ENSSDUG00000003077	TEX2 (ENSSDUG00000003089)	ccdc40 (ENSSDUG00000003129)	ENSSDUG00000003172	CBX4 (ENSSDUG00000003337)	cbx8b (ENSSDUG00000003344)	si:dkey-31g6.6 (ENSSDUG00000003351)	dgke (ENSSDUG00000003368)	ENSSDUG00000003413	trim25 (ENSSDUG00000003424)
Yellowtail amberjack	DUPLICATION
Yellowtail amberjack	MODERN SPECIES	2746																naa15b (ENSSLDG00000002726) #22	ENSSLDG00000002711	ENSSLDG00000002679	AXIN2 (ENSSLDG00000002615)	ENSSLDG00000002507	ENSSLDG00000002314	PRF1 (ENSSLDG00000002282)	ENSSLDG00000002275	TEX2 (ENSSLDG00000002225)	ccdc40 (ENSSLDG00000002199)	ENSSLDG00000002172	CBX4 (ENSSLDG00000002156)	cbx8b (ENSSLDG00000002148)	si:dkey-31g6.6 (ENSSLDG00000002136)	dgke (ENSSLDG00000002097)	ENSSLDG00000002079
Yellowtail amberjack	MODERN SPECIES	2529			ENSSLDG00000020966	get3 (ENSSLDG00000020950)	BEST2 (ENSSLDG00000020934)	JUNB (ENSSLDG00000020923)	prdx2 (ENSSLDG00000020901)	ENSSLDG00000020778	ENSSLDG00000020648	ENSSLDG00000020626	ENSSLDG00000020612	exosc9 (ENSSLDG00000020591)	ENSSLDG00000020527	scoca (ENSSLDG00000020501) #32	ENSSLDG00000020486 ##31	naa15b (ENSSLDG00000020447) #22
Eupercaria	ANCESTRAL SPECIES	2	ENSGT00390000006555	ENSGT00940000158476.a	ENSGT00940000160081.c.a	ENSGT00940000160777	ENSGT00440000035688	ENSGT00390000000463.a	ENSGT00940000157338.a	ENSGT00950000183035.b.f	ENSGT00940000163234.a.b.h.a.a.b	ENSGT00940000163454.a.a.a.a	ENSGT00940000163454.a.a.b	ENSGT00950000183130.A	ENSGT00950000182915.a.a.b #33	ENSGT00390000008828.fb.b #32	ENSGT00950000183201.b.a.b ##31	ENSGT00950000183174.B.a.e #22	ENSGT00940000157090.h #25	ENSGT00990000203987	ENSGT00940000154953.b #20	ENSGT00940000155249.g #19	ENSGT00940000167646	ENSGT00940000158431.a.a.a.a.a.a.d.b.a.b	ENSGT00940000157622.a.a	ENSGT00940000157622.a.b	ENSGT00940000156045.b	ENSGT00940000171111	ENSGT00390000003068	ENSGT00530000063359.B	ENSGT00940000165124.d	ENSGT00940000164963.c.b	ENSGT00940000158505.n.b
Eupecaria_A	ANCESTRAL SPECIES	3	ENSGT00390000006555	ENSGT00940000158476.a	ENSGT00940000160081.c.a	ENSGT00940000160777	ENSGT00440000035688	ENSGT00390000000463.a	ENSGT00940000157338.a	ENSGT00950000183035.b.f	ENSGT00940000163234.a.b.h.a.a.b	ENSGT00940000163454.a.a.a.a	ENSGT00940000163454.a.a.b	ENSGT00950000183130.A	ENSGT00950000182915.a.a.b #33	ENSGT00390000008828.fb.b #32	ENSGT00950000183201.b.a.b ##31	ENSGT00950000183174.B.a.e #22	ENSGT00940000157090.h #25	ENSGT00990000203987	ENSGT00940000154953.b #20	ENSGT00940000155249.g #19	ENSGT00940000167646	ENSGT00940000158431.a.a.a.a.a.a.d.b.a.b	ENSGT00940000157622.a.a	ENSGT00940000157622.a.b	ENSGT00940000156045.b	ENSGT00940000171111	ENSGT00390000003068	ENSGT00530000063359.B	ENSGT00940000165124.d	ENSGT00940000164963.c.b	ENSGT00940000158505.n.b
Ballan wrasse	MODERN SPECIES	509														scoca (ENSLBEG00000018233) #32	ENSLBEG00000018217 ##31	naa15b (ENSLBEG00000018110) #22	ENSLBEG00000018063 #25	ENSLBEG00000018047	elf2b (ENSLBEG00000018014) #20	NOCT (ENSLBEG00000017977) #19	ENSLBEG00000017954	ENSLBEG00000017907	slc43a3a (ENSLBEG00000017866)	ENSLBEG00000017847
Eupecaria_B	ANCESTRAL SPECIES	1	ENSGT00940000160081.c.a	ENSGT00940000160777	ENSGT00440000035688	ENSGT00390000000463.a	ENSGT00950000182933.B.b	ENSGT00530000063725.o	ENSGT00940000157338.a	ENSGT00950000183035.b.f	ENSGT00940000163234.a.b.h.a.a.b	ENSGT00940000163454.a.a.a.a	ENSGT00940000163454.a.a.b	ENSGT00950000183130.A	ENSGT00950000182915.a.a.b #33	ENSGT00390000008828.fb.b #32	ENSGT00950000183201.b.a.b ##31	ENSGT00950000183174.B.a.e #22	ENSGT00940000157090.h #25	ENSGT00940000154953.b #20	ENSGT00940000155249.g #19	ENSGT00940000167646	ENSGT00940000158431.a.a.a.a.a.a.d.b.a.b	ENSGT00940000157622.a.a	ENSGT00940000157622.a.b	ENSGT00940000156045.b	ENSGT00940000171111	ENSGT00390000003068	ENSGT00530000063359.B	ENSGT00940000165124.d	ENSGT00940000164963.c.b	ENSGT00940000158505.n.b	ENSGT00950000182932.B.a
Perciformes	ANCESTRAL SPECIES	2	ENSGT00940000160081.c.a	ENSGT00940000160777	ENSGT00440000035688	ENSGT00390000000463.a	ENSGT00950000182933.B.b	ENSGT00530000063725.o	ENSGT00940000157338.a	ENSGT00950000183035.b.f	ENSGT00940000163234.a.b.h.a.a.b	ENSGT00940000163454.a.a.a.a	ENSGT00940000163454.a.a.b	ENSGT00950000183130.A	ENSGT00950000182915.a.a.b #33	ENSGT00390000008828.fb.b #32	ENSGT00950000183201.b.a.b ##31	ENSGT00950000183174.B.a.e #22	ENSGT00940000157090.h #25	ENSGT00940000154953.b #20	ENSGT00940000155249.g #19	ENSGT00940000163186	ENSGT00940000157622.a.a	ENSGT00940000157622.a.b	ENSGT00940000156045.b	ENSGT00940000171111	ENSGT00390000003068	ENSGT00530000063359.B	ENSGT00940000165124.d	ENSGT00940000164963.c.b	ENSGT00940000158505.n.b	ENSGT00950000182932.B.a	ENSGT01020000230338.a.a
Cottioidei	ANCESTRAL SPECIES	3	ENSGT00940000160081.c.a	ENSGT00940000160777	ENSGT00440000035688	ENSGT00390000000463.a	ENSGT00950000182933.B.b	ENSGT00530000063725.o	ENSGT00940000157338.a	ENSGT00950000183035.b.f	ENSGT00940000163234.a.b.h.a.a.b	ENSGT00940000163454.a.a.a.a	ENSGT00940000163454.a.a.b	ENSGT00950000183130.A	ENSGT00950000182915.a.a.b #33	ENSGT00390000008828.fb.b #32	ENSGT00870000137155	ENSGT00950000183174.B.a.e #22	ENSGT00940000157090.h #25	ENSGT00940000154953.b #20	ENSGT00940000155249.g #19	ENSGT00940000177894	ENSGT00940000157622.a.a	ENSGT00940000156045.b	ENSGT00390000003068	ENSGT00530000063359.B	ENSGT00940000165124.d	ENSGT00940000164963.c.b	ENSGT00940000158505.n.b	ENSGT00950000182932.B.a	ENSGT01020000230338.a.a	ENSGT00940000164685.a	ENSGT00940000162009.b
Lumpfish	MODERN SPECIES		si:dkey-31g6.6 (ENSCLMG00005004075)	cbx8b (ENSCLMG00005004073)	ENSCLMG00005004072	ENSCLMG00005004071	TEX2 (ENSCLMG00005004062)	ENSCLMG00005004060	prf1.2 (ENSCLMG00005004033)	AXIN2 (ENSCLMG00005004031)	ENSCLMG00005004027	slc47a2.2 (ENSCLMG00005004023)	ENSCLMG00005004020	ENSCLMG00005004018	exosc9 (ENSCLMG00005004014)	ENSCLMG00005002767	scoca (ENSCLMG00005002766) #32	naa15b (ENSCLMG00005001117) #22	ENSCLMG00005001090 #25	elf2b (ENSCLMG00005001089) #20	NOCT (ENSCLMG00005001076) #19	ENSCLMG00005001074	ENSCLMG00005001073	ENSCLMG00005001072	ENSCLMG00005001071	CTNND1 (ENSCLMG00005000498)	timm10 (ENSCLMG00005000455)	unc93b1 (ENSCLMG00005000068)	ENSCLMG00005000045	ENSCLMG00005000040	rtn4rl2a (ENSCLMG00005000035)	ENSCLMG00005000032	ENSCLMG00005000029
Stickleback	MODERN SPECIES	4	APOH (ENSGACG00000018516)	nol11 (ENSGACG00000018513)	BPTF (ENSGACG00000018507)	ENSGACG00000018506	ENSGACG00000018504	ENSGACG00000018501	ENSGACG00000018500	AXIN2 (ENSGACG00000018497)	ENSGACG00000018494	ENSGACG00000018491	ENSGACG00000018488	exosc9 (ENSGACG00000018481)	clgn (ENSGACG00000018479) #33	scoca (ENSGACG00000018478) #32	ENSGACG00000018476	naa15b (ENSGACG00000018473) #22	ENSGACG00000018472	elf2b (ENSGACG00000018469) #20	NOCT (ENSGACG00000018465) #19	ENSGACG00000018463	slc43a3a (ENSGACG00000018459)	CTNND1 (ENSGACG00000018454)	timm10 (ENSGACG00000018452)	unc93b1 (ENSGACG00000018451)	ENSGACG00000018448	ENSGACG00000018436	rtn4rl2a (ENSGACG00000018434)	NAT8L (ENSGACG00000018431)	ENSGACG00000018430	ENSGACG00000018429	cabp2a (ENSGACG00000018426)
Perciformes_a	ANCESTRAL SPECIES		ENSGT00940000160081.c.a	ENSGT00940000160777	ENSGT00440000035688	ENSGT00390000000463.a	ENSGT00950000182933.B.b	ENSGT00530000063725.o	ENSGT00940000157338.a	ENSGT00950000183035.b.f	ENSGT00940000163234.a.b.h.a.a.b	ENSGT00940000163454.a.a.a.a	ENSGT00940000163454.a.a.b	ENSGT00950000183130.A	ENSGT00950000182915.a.a.b #33	ENSGT00390000008828.fb.b #32	ENSGT00950000183201.b.a.b ##31	ENSGT00950000183174.B.a.e #22	ENSGT00940000157090.h #25	ENSGT00940000154953.b #20	ENSGT00940000155249.g #19	ENSGT00940000163186	ENSGT00940000157622.a.a	ENSGT00940000157622.a.b	ENSGT00940000156045.b	ENSGT00940000171111	ENSGT00390000003068	ENSGT00530000063359.B	ENSGT00940000165124.d	ENSGT00940000164963.c.b	ENSGT00940000158505.n.b	ENSGT00950000182932.B.a	ENSGT01020000230338.a.a
Channel bull blenny	MODERN SPECIES		ENSCGOG00000005801	ENSCGOG00000005800	ENSCGOG00000005799	ENSCGOG00000005781	ENSCGOG00000005776	ENSCGOG00000005716	exosc9 (ENSCGOG00000005661)	clgn (ENSCGOG00000004825) #33	scoca (ENSCGOG00000004792) #32	ENSCGOG00000004790	ENSCGOG00000004770	ENSCGOG00000004763	ENSCGOG00000004760	ENSCGOG00000004757 ##31	ENSCGOG00000004756	naa15b (ENSCGOG00000003080) #22	ENSCGOG00000003003 #25	elf2b (ENSCGOG00000002994) #20	NOCT (ENSCGOG00000002987) #19	ENSCGOG00000002977	slc43a3a (ENSCGOG00000002972)	slc43a3a (ENSCGOG00000002967)	CTNND1 (ENSCGOG00000002909)	ENSCGOG00000002898	timm10 (ENSCGOG00000002894)	unc93b1 (ENSCGOG00000002646)	ENSCGOG00000019871	ENSCGOG00000019856	rtn4rl2a (ENSCGOG00000019853)	ENSCGOG00000019852	ENSCGOG00000019851
Pike perch	MODERN SPECIES	63	ENSSLUG00000012205	ENSSLUG00000012182	ENSSLUG00000012167	ENSSLUG00000012157	PRF1 (ENSSLUG00000012152)	PRF1 (ENSSLUG00000012142)	AXIN2 (ENSSLUG00000012115)	ENSSLUG00000012106	ENSSLUG00000011969	ENSSLUG00000011936	exosc9 (ENSSLUG00000011903)	clgn (ENSSLUG00000009990) #33	scoca (ENSSLUG00000009908) #32	ENSSLUG00000009906 ##31	ENSSLUG00000009904 ##31	naa15b (ENSSLUG00000010430) #22	ENSSLUG00000010299 #25	elf2b (ENSSLUG00000010293) #20	NOCT (ENSSLUG00000010282) #19	ENSSLUG00000010277	ENSSLUG00000010272	CTNND1 (ENSSLUG00000008688)	ENSSLUG00000008606	timm10 (ENSSLUG00000008601)	unc93b1 (ENSSLUG00000008292)	ENSSLUG00000008257	ENSSLUG00000008245	rtn4rl2a (ENSSLUG00000008240)	ENSSLUG00000008236	ENSSLUG00000008232	cabp2a (ENSSLUG00000008223)
Eupecaria_C	ANCESTRAL SPECIES	22	ENSGT00940000160081.c.a	ENSGT00940000160777	ENSGT00440000035688	ENSGT00390000000463.a	ENSGT00950000182933.B.b	ENSGT00530000063725.o	ENSGT00940000157338.a	ENSGT00950000183035.b.f	ENSGT00940000163234.a.b.h.a.a.b	ENSGT00940000163454.a.a.a.a	ENSGT00940000163454.a.a.b	ENSGT00950000183130.A	ENSGT00950000182915.a.a.b #33	ENSGT00390000008828.fb.b #32	ENSGT00950000183201.b.a.b ##31	ENSGT00950000183174.B.a.e #22	ENSGT00940000157090.h #25	ENSGT00940000154953.b #20	ENSGT00940000155249.g #19	ENSGT00940000167646	ENSGT00940000158431.a.a.a.a.a.a.d.b.a.b	ENSGT00940000157622.a.a	ENSGT00940000157622.a.b	ENSGT01020000230338.a.b.a.e	ENSGT00940000156045.b	ENSGT00940000171111	ENSGT00390000003068	ENSGT00530000063359.B	ENSGT00940000165124.d	ENSGT00940000164963.c.b	ENSGT00940000158505.n.b
Gilthead seabream	MODERN SPECIES		ccdc40 (ENSSAUG00010000297)	TEX2 (ENSSAUG00010000271)	ENSSAUG00010000260	ENSSAUG00010000252	ENSSAUG00010000241 #25	ENSSAUG00010000234	AXIN2 (ENSSAUG00010000226)	ENSSAUG00010000216	ENSSAUG00010000159	ENSSAUG00010000124	ENSSAUG00010026560	exosc9 (ENSSAUG00010026553)	clgn (ENSSAUG00010026519) #33	scoca (ENSSAUG00010026513) #32	ENSSAUG00010026512 ##31	naa15b (ENSSAUG00010026407) #22	elf2b (ENSSAUG00010026384) #20	NOCT (ENSSAUG00010026383) #19	ENSSAUG00010026381	ENSSAUG00010026380	slc43a3a (ENSSAUG00010026376)	slc43a3a (ENSSAUG00010026375)	ENSSAUG00010026372	CTNND1 (ENSSAUG00010026198)	ENSSAUG00010026189	Tim10 (ENSSAUG00010026188)	unc93b1 (ENSSAUG00010026187)	ENSSAUG00010026185	ENSSAUG00010026183	rtn4rl2a (ENSSAUG00010026182)	ENSSAUG00010026180
Eupercaria_incertae_sedis	ANCESTRAL SPECIES	21	ENSGT00940000158476.a	ENSGT00940000160081.c.a	ENSGT00940000160777	ENSGT00440000035688	ENSGT00390000000463.a	ENSGT00530000063725.o	ENSGT00940000157338.a	ENSGT00950000183035.b.f	ENSGT00940000163234.a.b.h.a.a.b	ENSGT00940000163454.a.a.a.a	ENSGT00940000163454.a.a.b	ENSGT00950000183130.A	ENSGT00950000182915.a.a.b #33	ENSGT00390000008828.fb.b #32	ENSGT00950000183201.b.a.b ##31	ENSGT00950000183174.B.a.e #22	ENSGT00940000157090.h #25	ENSGT00940000154953.b #20	ENSGT00940000155249.g #19	ENSGT00940000167646	ENSGT00940000158431.a.a.a.a.a.a.d.b.a.b	ENSGT00940000157622.a.a	ENSGT00940000157622.a.b	ENSGT01020000230338.a.b.a.e	ENSGT00940000156045.b	ENSGT00940000171111	ENSGT00390000003068	ENSGT00530000063359.B	ENSGT00940000165124.d	ENSGT00940000164963.c.b	ENSGT00940000158505.n.b
European seabass	MODERN SPECIES	20	ENSDLAG00005033704	ENSDLAG00005027725	ENSDLAG00005027931	ENSDLAG00005013486	ENSDLAG00005013479	ENSDLAG00005013503	ENSDLAG00005032789	ENSDLAG00005013522	ENSDLAG00005013535	ENSDLAG00005013772	ENSDLAG00005031205	ENSDLAG00005013822	clgn (ENSDLAG00005013929) #33	ENSDLAG00005033773 #32	ENSDLAG00005014938 ##31	ENSDLAG00005014969 #22	ENSDLAG00005034523 #25	ENSDLAG00005015909	ENSDLAG00005015912 #20	ENSDLAG00005015919 #19	ENSDLAG00005029906	ENSDLAG00005032969	slc43a3a (ENSDLAG00005015938)	slc43a3a (ENSDLAG00005015946)	ENSDLAG00005015963	ENSDLAG00005015997	ENSDLAG00005017082	unc93b1 (ENSDLAG00005017104)	ENSDLAG00005017347	ENSDLAG00005017356	rtn4rl2a (ENSDLAG00005017401)
Large yellow croaker	MODERN SPECIES	481	gstt1b (ENSLCRG00005002514)	patl1 (ENSLCRG00005002668)	ENSLCRG00005002803	ENSLCRG00005002807	ENSLCRG00005002812	ENSLCRG00005002816	ENSLCRG00005002819	ENSLCRG00005002826	ENSLCRG00005002847	ENSLCRG00005003449	ENSLCRG00005003451	exosc9 (ENSLCRG00005003459)	clgn (ENSLCRG00005003589) #33	scoca (ENSLCRG00005004103) #32	ENSLCRG00005004104 ##31	naa15b (ENSLCRG00005004120) #22	ENSLCRG00005006693 #25	ENSLCRG00005006695	elf2b (ENSLCRG00005006698) #20	NOCT (ENSLCRG00005006701) #19	ENSLCRG00005006707	ENSLCRG00005006708	slc43a3a (ENSLCRG00005006711)	slc43a3a (ENSLCRG00005006712)	ENSLCRG00005006713	ENSLCRG00005006714	ENSLCRG00005006717	CTNND1 (ENSLCRG00005006724)	ENSLCRG00005008692	timm10 (ENSLCRG00005008694)	unc93b1 (ENSLCRG00005008698)
Tetraodontidae	ANCESTRAL SPECIES	54	ENSGT00940000155386.a	ENSGT00940000165433	ENSGT00940000164979.e	ENSGT00940000158604	ENSGT00940000160081.c.a	ENSGT00940000160777	ENSGT00390000000463.a	ENSGT00530000063725.o	ENSGT00940000157338.a	ENSGT00950000183035.b.f	ENSGT00940000163234.a.b.h.a.b	ENSGT00950000183130.A	ENSGT00990000204378	ENSGT00390000008828.fb.b #32	ENSGT00950000183201.b.a.b ##31	ENSGT00950000183174.B.a.e #22	ENSGT00940000157090.h #25	ENSGT00940000154953.b #20	ENSGT00940000155249.g #19	ENSGT00940000156045.b	ENSGT00390000003068	ENSGT00530000063359.B	ENSGT00940000164963.c.b	ENSGT00940000158505.n.b	ENSGT01020000230338.a.a	ENSGT00940000164685.a	ENSGT00940000162009.b	ENSGT00390000011517.a.a.c.b	ENSGT00940000162287.E	ENSGT01100000263533.b.b.a.a.a.a.b.a.a
Fugu	MODERN SPECIES	8	ENSTRUG00000032147	CBX4 (ENSTRUG00000001874)	CARD14 (ENSTRUG00000003023)	TEX2 (ENSTRUG00000032313)	ENSTRUG00000004126	ENSTRUG00000031733	ENSTRUG00000028364	AXIN2 (ENSTRUG00000005813)	ENSTRUG00000032628	ENSTRUG00000004721	exosc9 (ENSTRUG00000004119)	ENSTRUG00000003449	scoca (ENSTRUG00000029569) #32	ENSTRUG00000003286 ##31	ENSTRUG00000021971 ##31	naa15b (ENSTRUG00000015036) #22	ENSTRUG00000027001 #25	ENSTRUG00000032488	elf2b (ENSTRUG00000014983) #20	NOCT (ENSTRUG00000014977) #19	ENSTRUG00000014916	CTNND1 (ENSTRUG00000014794)	ENSTRUG00000033313	ENSTRUG00000032085	timm10 (ENSTRUG00000014789)	unc93b1 (ENSTRUG00000014741)	ENSTRUG00000014719	rtn4rl2a (ENSTRUG00000030646)	ENSTRUG00000024277	cabp2a (ENSTRUG00000014658)	PTGDR2 (ENSTRUG00000014619)
Tetraodon	DUPLICATION
Tetraodon	MODERN SPECIES	26	ENSTNIG00000003286	ENSTNIG00000000482	dgke (ENSTNIG00000004610)	cbx8b (ENSTNIG00000004609)	CBX4 (ENSTNIG00000004608)	CARD14 (ENSTNIG00000004607)	TEX2 (ENSTNIG00000004606)	AXIN2 (ENSTNIG00000004605)	ENSTNIG00000004604	ENSTNIG00000004603	ENSTNIG00000004602	ENSTNIG00000000121	exosc9 (ENSTNIG00000004601)	clgn (ENSTNIG00000004600) #33	ENSTNIG00000003033 ##31	NAA15 (ENSTNIG00000012342) #22	ENSTNIG00000012343 #25	ENSTNIG00000012344	elf2b (ENSTNIG00000012345) #20	NOCT (ENSTNIG00000012346) #19	slc43a3a (ENSTNIG00000012347)	CTNND1 (ENSTNIG00000012348)	timm10 (ENSTNIG00000000553)	unc93b1 (ENSTNIG00000012349)	ENSTNIG00000012350	rtn4rl2a (ENSTNIG00000012351)	ENSTNIG00000012352	cabp2a (ENSTNIG00000012353)	PTGDR2 (ENSTNIG00000012354)	ENSTNIG00000012355	ENSTNIG00000012356
Tetraodon	MODERN SPECIES	12	STOX2 (ENSTNIG00000005837)	ENSTNIG00000005838	ENSTNIG00000000484	immt (ENSTNIG00000005831)	ids (ENSTNIG00000005832)	dcps (ENSTNIG00000005833)	magt1 (ENSTNIG00000005834)	FBXO38 (ENSTNIG00000005835)	csnk1a1 (ENSTNIG00000004445)	pcdh18b (ENSTNIG00000007176) #15	ENSTNIG00000002215	ENSTNIG00000019507	ENSTNIG00000003564	NOCT (ENSTNIG00000014249) #19	elf2a (ENSTNIG00000014248) #20	NAA15 (ENSTNIG00000003910) #22	mlsl (ENSTNIG00000003909)	ENSTNIG00000003908	hvcn1 (ENSTNIG00000003907)
Spotted gar	MODERN SPECIES	670	pgrmc2 (ENSLOCG00000010679) #7	asmt2 (ENSLOCG00000010666)	jade1 (ENSLOCG00000010648) #8	SCLT1 (ENSLOCG00000010642) #9	zgc:77739 (ENSLOCG00000010633) #10	ENSLOCG00000010626	pcdh10b (ENSLOCG00000010614) #11	ENSLOCG00000018040	ENSLOCG00000010606	pcdh18b (ENSLOCG00000010600) #15	ENSLOCG00000010595	NOCT (ENSLOCG00000010593) #19	elf2b (ENSLOCG00000010581) #20	mgarpa (ENSLOCG00000010572)	ENSLOCG00000010564	naa15b (ENSLOCG00000010549) #22	mlsl (ENSLOCG00000010540)	rab33ba (ENSLOCG00000010535) #25	zgc:113425 (ENSLOCG00000010524)	setd7 (ENSLOCG00000010519) #27	mgst2 (ENSLOCG00000010514) #30	ENSLOCG00000010506 ##31	scocb (ENSLOCG00000010495) #32	clgn (ENSLOCG00000010483) #33	zgc:154054 (ENSLOCG00000010472)	grk4 (ENSLOCG00000010446)	htt (ENSLOCG00000010421)	msantd1 (ENSLOCG00000010411)	rgs12b (ENSLOCG00000010388)	HGFAC (ENSLOCG00000010382)	DOK7 (ENSLOCG00000010376)
Reedfish	MODERN SPECIES	13	mfsd8 (ENSECRG00000021496)	abhd18 (ENSECRG00000021537)	LARP1B (ENSECRG00000021566)	ENSECRG00000021588	pgrmc2 (ENSECRG00000021598) #7	asmt2 (ENSECRG00000021614)	jade1 (ENSECRG00000021625) #8	SCLT1 (ENSECRG00000021642) #9	zgc:77739 (ENSECRG00000021665) #10	pcdh10b (ENSECRG00000021682) #11	pcdh18b (ENSECRG00000021692) #15	SLC7A11 (ENSECRG00000021710) #16	NOCT (ENSECRG00000021737) #19	elf2b (ENSECRG00000021755) #20	ENSECRG00000021782	naa15b (ENSECRG00000021817) #22	mlsl (ENSECRG00000000961)	rab33ba (ENSECRG00000001034) #25	zgc:113425 (ENSECRG00000001050)	setd7 (ENSECRG00000001130) #27	mgst2 (ENSECRG00000001245) #30	ENSECRG00000001262 ##31	scoca (ENSECRG00000001285) #32	clgn (ENSECRG00000001306) #33	ENSECRG00000001345	grk4 (ENSECRG00000001430)	htt (ENSECRG00000001584)	ENSECRG00000001714	msantd1 (ENSECRG00000001724)	RGS12 (ENSECRG00000001742)	HGFAC (ENSECRG00000001772)
Actinopterygii	ANCESTRAL SPECIES	20	ENSGT00940000166228	ENSGT00940000158247 #8	ENSGT00730000111168 #9	ENSGT00390000006284 #10	ENSGT01030000234904	ENSGT00940000158277 #11	ENSGT00940000156295 #15	ENSGT00940000160324 #16	ENSGT00940000155249 #19	ENSGT00940000154953.b #20	ENSGT00440000037338	ENSGT01030000235247	ENSGT00390000002565 #21	ENSGT00950000183174.B.a.e #22	ENSGT00940000154953.a #20	ENSGT00950000183174.B.a.f #22	ENSGT00390000002932	ENSGT00940000157090 #25	ENSGT00390000008183	ENSGT00390000004827 #27	ENSGT00940000160288 #30	ENSGT00950000183201.b.a.b ##31	ENSGT00390000008828 #32	ENSGT00950000182915.a.a.b #33	ENSGT00940000156526.b	ENSGT00940000160151	ENSGT00390000015863	ENSGT00390000002245	ENSGT00940000159741	ENSGT00940000159778.a	ENSGT00390000015386
Neopterygii	ANCESTRAL SPECIES	35	ENSGT00940000166228	ENSGT00940000158247 #8	ENSGT00730000111168 #9	ENSGT00390000006284 #10	ENSGT01030000234904	ENSGT00940000158277 #11	ENSGT00940000156295 #15	ENSGT00940000166427	ENSGT00940000155249 #19	ENSGT00940000154953.b #20	ENSGT00440000037338	ENSGT01030000235247	ENSGT00390000002565 #21	ENSGT00950000183174.B.a.e #22	ENSGT00940000154953.a #20	ENSGT00950000183174.B.a.f #22	ENSGT00390000002932	ENSGT00940000157090 #25	ENSGT00390000008183	ENSGT00390000004827 #27	ENSGT00940000160288 #30	ENSGT00950000183201.b.a.b ##31	ENSGT00390000008828 #32	ENSGT00950000182915.a.a.b #33	ENSGT00940000156526.b	ENSGT00940000160151	ENSGT00390000015863	ENSGT00390000002245	ENSGT00940000164407.a.a	ENSGT00940000159778.a	ENSGT00390000015386
Osteoglossocephalai	ANCESTRAL SPECIES	164	ENSGT01030000234904	ENSGT00940000158277.a #11	ENSGT00940000166390	ENSGT00940000158277.b #11	ENSGT00940000156295 #15	ENSGT00940000166427	ENSGT00940000155249 #19	ENSGT00940000154953.b #20	ENSGT00990000203987	ENSGT00390000002565 #21	ENSGT00950000183174.B.a.e #22	ENSGT00390000002932	ENSGT00940000157090.h #25	ENSGT00940000154953.a #20	ENSGT00440000037338	ENSGT00950000183174.B.a.f #22	ENSGT00940000157090.g #25	ENSGT00390000008183	ENSGT00390000004827 #27	ENSGT00940000160288 #30	ENSGT00950000183201.b.a.b ##31	ENSGT00390000008828 #32	ENSGT00940000156526.b
Clupeocephala	ANCESTRAL SPECIES	115	ENSGT00940000159636	ENSGT00940000154889	ENSGT00940000156228.p	ENSGT00940000158708.a	ENSGT00940000158062.f.a	ENSGT00940000156892.b	ENSGT00940000154617.A.a.a	ENSGT00730000111168 #9	ENSGT00390000006284 #10	ENSGT00940000158277.b #11	ENSGT00940000156295.h #15	ENSGT00940000166427	ENSGT00940000155249.h #19	ENSGT00940000154953.a #20	ENSGT00440000037338	ENSGT00950000183174.B.a.f #22	ENSGT00940000156295.g #15	ENSGT00940000155249.g #19	ENSGT00940000154953.b #20	ENSGT00940000157090.h #25	ENSGT00950000183174.B.a.e #22	ENSGT00870000137155	ENSGT00950000183201.b.a.b ##31	ENSGT00390000008828.fb.b #32	ENSGT00950000182915.a.a.b #33
Otomorpha	ANCESTRAL SPECIES	341				ENSGT00730000111168 #9	ENSGT00390000006284 #10	ENSGT00940000158277.b #11	ENSGT00940000156295.g #15	ENSGT00940000155249.g #19	ENSGT01030000234904	ENSGT00940000158277.a #11	ENSGT00940000156295.h #15	ENSGT00940000166427	ENSGT00940000155249.h #19	ENSGT00940000154953.a #20	ENSGT00440000037338	ENSGT00950000183174.B.a.f #22	ENSGT00940000154953.b #20	ENSGT00940000157090.h #25	ENSGT00950000183174.B.a.e #22	ENSGT00870000137155	ENSGT00950000183201.b.a.b ##31	ENSGT00390000008828.fb.b #32	ENSGT00950000182915.a.a.b #33
Otophysi	ANCESTRAL SPECIES	10			ENSGT00940000159595	ENSGT00940000154735.d.b	ENSGT00940000163328.c	ENSGT00940000165206.d	ENSGT00940000158334	ENSGT00940000156901.A.d	ENSGT00940000168499.c	ENSGT00390000002292.b	ENSGT00940000159591	ENSGT00940000155249.h #19	ENSGT00940000154953.a #20	ENSGT00440000037338	ENSGT00960000187553	ENSGT00950000183174.B.a.f #22	ENSGT00390000002932	ENSGT00940000157090.g #25	ENSGT00390000008183	ENSGT00390000004827 #27	ENSGT00940000160288 #30	ENSGT00390000008828.gb #32	ENSGT00940000156526.b	ENSGT00510000050125	ENSGT00940000159799	ENSGT00940000153451.a.a.b	ENSGT00940000158978.a.a	ENSGT00940000156647.a	ENSGT00940000158241	ENSGT00390000010773	ENSGT00940000154672
Characiphysae	ANCESTRAL SPECIES	21			ENSGT00940000159595	ENSGT00940000154735.d.b	ENSGT00940000163328.c	ENSGT00940000165206.d	ENSGT00940000158334	ENSGT00940000156901.A.d	ENSGT00940000168499.c	ENSGT00390000002292.b	ENSGT00940000159591	ENSGT00940000155249.h #19	ENSGT00940000154953.a #20	ENSGT00440000037338	ENSGT00960000187553	ENSGT00950000183174.B.a.f #22	ENSGT00390000002932	ENSGT00940000157090.g #25	ENSGT00390000008183	ENSGT00390000004827 #27	ENSGT00940000160288 #30	ENSGT00390000008828.gb #32	ENSGT00940000156526.b	ENSGT00510000050125	ENSGT00940000159799	ENSGT00940000153451.a.a.b	ENSGT00940000158978.a.a	ENSGT00940000156647.a	ENSGT00940000158241	ENSGT00390000010773	ENSGT00940000154672
Characiphysae_b	ANCESTRAL SPECIES	16	ENSGT00940000156892.a	ENSGT00940000158417.a	ENSGT00940000159595	ENSGT00940000154735.d.b	ENSGT00940000163328.c	ENSGT00940000165206.d	ENSGT00940000158334	ENSGT00940000156901.A.d	ENSGT00940000168499.c	ENSGT00390000002292.b	ENSGT00940000159591	ENSGT00940000155249.h #19	ENSGT00940000154953.a #20	ENSGT00440000037338	ENSGT00960000187553	ENSGT00950000183174.B.a.f #22	ENSGT00390000002932	ENSGT00940000157090.g #25	ENSGT00390000008183	ENSGT00390000004827 #27	ENSGT00940000160288 #30	ENSGT00390000008828.gb #32	ENSGT00940000156526.b	ENSGT00510000050125	ENSGT00940000159799	ENSGT00940000153451.a.a.b	ENSGT00940000158978.a.a	ENSGT00940000156647.a	ENSGT00940000158241	ENSGT00390000010773	ENSGT00940000154672
Characoidei	ANCESTRAL SPECIES	56	ENSGT00940000158417.a	ENSGT00940000159595	ENSGT00940000154735.d.b	ENSGT00940000163328.c	ENSGT00940000165206.d	ENSGT00940000158334	ENSGT00940000156901.A.d	ENSGT00940000168499.c	ENSGT00390000002292.b	ENSGT00940000159591	ENSGT00940000182486	ENSGT00940000155249.h #19	ENSGT00940000154953.a #20	ENSGT00440000037338	ENSGT00960000187553	ENSGT00950000183174.B.a.f #22	ENSGT00390000002932	ENSGT00940000157090.g #25	ENSGT00390000008183	ENSGT00390000004827 #27	ENSGT00940000160288 #30	ENSGT00390000008828.gb #32	ENSGT00940000156526.b	ENSGT00510000050125.c	ENSGT00940000159799	ENSGT00940000153451.a.a.b	ENSGT00940000158978.a.a	ENSGT00940000156647.a	ENSGT00940000158241	ENSGT00390000010773	ENSGT00940000154672
Red-bellied piranha	MODERN SPECIES	21	rack1 (ENSPNAG00000000469)	nme5 (ENSPNAG00000007792)	hnrnpaba (ENSPNAG00000000458)	eif4ebp3l (ENSPNAG00000007774)	hnrnph1 (ENSPNAG00000000439)	ENSPNAG00000007744	hbegfa (ENSPNAG00000007729)	ENSPNAG00000029577	slu7 (ENSPNAG00000006885)	C1QTNF2 (ENSPNAG00000029444)	ENSPNAG00000029437	NOCT (ENSPNAG00000029426) #19	elf2a (ENSPNAG00000029417) #20	ENSPNAG00000029410	ndufc1 (ENSPNAG00000004579)	naa15a (ENSPNAG00000006503) #22	mlsl (ENSPNAG00000029293)	rab33ba (ENSPNAG00000029115) #25	zgc:113425 (ENSPNAG00000029098)	setd7 (ENSPNAG00000006080) #27	mgst2 (ENSPNAG00000004498) #30	scocb (ENSPNAG00000029031) #32	zgc:154054 (ENSPNAG00000006795)	ENSPNAG00000028883	ENSPNAG00000028876	ENSPNAG00000004445	cnot6b (ENSPNAG00000028816)	ENSPNAG00000006026	rxfp1 (ENSPNAG00000005283)	etfdh (ENSPNAG00000028413)	ppid (ENSPNAG00000028361)
Mexicana tetra	MODERN SPECIES	16	ENSAMXG00000002754	ENSAMXG00000002614	rack1 (ENSAMXG00000002584)	nme5 (ENSAMXG00000029229)	eif4ebp3l (ENSAMXG00000042158)	hnrnpaba (ENSAMXG00000002560)	hnrnph1 (ENSAMXG00000002483)	ENSAMXG00000002449	hbegfa (ENSAMXG00000034387)	slu7 (ENSAMXG00000002404)	C1QTNF2 (ENSAMXG00000035234)	ENSAMXG00000036747	NOCT (ENSAMXG00000002383) #19	elf2a (ENSAMXG00000002354) #20	ndufc1 (ENSAMXG00000032959)	naa15a (ENSAMXG00000002242) #22	mlsl (ENSAMXG00000029978)	rab33ba (ENSAMXG00000040286) #25	zgc:113425 (ENSAMXG00000002168)	setd7 (ENSAMXG00000041773) #27	mgst2 (ENSAMXG00000039723) #30	scocb (ENSAMXG00000002131) #32	zgc:154054 (ENSAMXG00000002123)	ppid (ENSAMXG00000002090)	etfdh (ENSAMXG00000002059)	rxfp1 (ENSAMXG00000001943)	ENSAMXG00000033016	ENSAMXG00000043703	ENSAMXG00000038223	ENSAMXG00000030043	ENSAMXG00000041111
Electric eel	MODERN SPECIES	265	chrnb3b (ENSEEEG00000002314)	ENSEEEG00000002303	rack1 (ENSEEEG00000002290)	nme5 (ENSEEEG00000002250)	hnrnpaba (ENSEEEG00000002245)	eif4ebp3l (ENSEEEG00000002242)	hnrnph1 (ENSEEEG00000002239)	ENSEEEG00000002136	hbegfa (ENSEEEG00000002132)	slu7 (ENSEEEG00000002125)	C1QTNF2 (ENSEEEG00000002122)	NOCT (ENSEEEG00000002119) #19	elf2a (ENSEEEG00000002118) #20	ENSEEEG00000002116	ndufc1 (ENSEEEG00000002113)	naa15a (ENSEEEG00000000938) #22	mlsl (ENSEEEG00000000862)	rab33ba (ENSEEEG00000000860) #25	zgc:113425 (ENSEEEG00000000858)	setd7 (ENSEEEG00000000854) #27	scocb (ENSEEEG00000000841) #32	zgc:154054 (ENSEEEG00000000831)	ENSEEEG00000000825	ENSEEEG00000000822	cnot6b (ENSEEEG00000000768)	ENSEEEG00000000742	met (ENSEEEG00000000572)	ENSEEEG00000000517
Channel catfish	MODERN SPECIES	27	hnrnph1 (ENSIPUG00000018262)	eif4ebp3l (ENSIPUG00000018246)	HNRNPAB (ENSIPUG00000018218)	nme5 (ENSIPUG00000018174)	rack1 (ENSIPUG00000018129)	ENSIPUG00000018112	ENSIPUG00000018012	ENSIPUG00000018001	HBEGF (ENSIPUG00000017990)	slu7 (ENSIPUG00000017949)	c1qtnf2 (ENSIPUG00000017941)	Ccrn4l (ENSIPUG00000017932) #19	elf2 (ENSIPUG00000017922) #20	mgarpa (ENSIPUG00000017909)	ndufc1 (ENSIPUG00000017903)	naa15a (ENSIPUG00000017770) #22	ENSIPUG00000017762	mlsl (ENSIPUG00000017698)	rab33b (ENSIPUG00000017684) #25	zgc:113425 (ENSIPUG00000017674)	setd7 (ENSIPUG00000017667) #27	ENSIPUG00000017659	scocb (ENSIPUG00000017633) #32	mgat4d (ENSIPUG00000017556)	ENSIPUG00000017532	simc1 (ENSIPUG00000017519)	cnot6b (ENSIPUG00000017482)	ADAMTS2 (ENSIPUG00000017438)	rxfp1 (ENSIPUG00000017384)	etfdh (ENSIPUG00000017331)	PPID (ENSIPUG00000017290)
Cyprinoidei	ANCESTRAL SPECIES	31	ENSGT00940000159139.b.b	ENSGT00390000008374	ENSGT00940000162660.b.b.a.h	ENSGT00930000151054	ENSGT00940000159921.d	ENSGT00940000165784	ENSGT00940000159375.c.b	ENSGT00940000161450	ENSGT00390000013444.a.b.b.b	ENSGT00390000002292.b	ENSGT00940000159591	ENSGT00940000155249.h #19	ENSGT00940000154953.a #20	ENSGT00440000037338	ENSGT00960000187553	ENSGT00950000183174.B.a.f #22	ENSGT00390000002932	ENSGT00940000157090.g #25	ENSGT00390000008183	ENSGT00390000004827 #27	ENSGT00940000160288 #30	ENSGT00840000132118.a	ENSGT00940000164685.b	ENSGT00940000164963.c.a	ENSGT00940000165124.b	ENSGT00390000011368	ENSGT00940000155372	ENSGT00390000012346	ENSGT00940000155988.d	ENSGT00530000063586.b.c.b	ENSGT00390000010628.b
Cyprininae	DUPLICATION
Cyprininae	DUPLICATION
Cyprininae	ANCESTRAL SPECIES	39	ENSGT00940000159139.b.b.c	ENSGT00880000138031.bb.b	ENSGT00940000159921.d.b	ENSGT00940000165784.g	ENSGT00940000161450	ENSGT00940000159375.c.b.b	ENSGT00390000013444.a.b.b.b.b	ENSGT00390000002292.b.c	ENSGT00940000159591.c	ENSGT00940000155249.h.b #19	ENSGT00940000154953.a.b #20	ENSGT00440000037338	ENSGT00960000187553.b	ENSGT00950000183174.B.a.f.b #22	ENSGT00390000002932.b	ENSGT00950000183174.B.a.f.a.a #22	ENSGT00940000157090.g.b #25	ENSGT00390000008183.f	ENSGT00390000004827.d #27	ENSGT00940000160288.g #30	ENSGT00940000164685.b.a	ENSGT00940000164963.c.a.b	ENSGT00940000165124.b.b	ENSGT00390000011368.b.a	ENSGT00940000155372.q	ENSGT00390000012346	ENSGT00940000155988.d.d	ENSGT00940000155988.d.c	ENSGT00940000154372.a.b.b	ENSGT00940000154372.a.a.a.b	ENSGT00940000154372.a.a.a.a
Cyprininae_a	ANCESTRAL SPECIES	134	ENSGT00940000159139.b.b.c	ENSGT00390000008374.f	ENSGT00940000162660.b.b.a.h.a.a.a	ENSGT00880000138031.bb.b	ENSGT00940000159921.d.b	ENSGT00940000165784.g	ENSGT00940000161450.e	ENSGT00940000159375.c.b.b	ENSGT00390000013444.a.b.b.b.b	ENSGT00390000002292.b.c	ENSGT00940000159591.c	ENSGT00940000155249.h.b #19	ENSGT00940000154953.a.b #20	ENSGT00440000037338	ENSGT00960000187553.b	ENSGT00950000183174.B.a.f.a.a #22	ENSGT00390000002932.b	ENSGT00940000157090.g.b #25	ENSGT00390000008183.f	ENSGT00390000004827.d #27	ENSGT00940000160288.g #30	ENSGT00940000164685.b.a	ENSGT00940000164963.c.a.b	ENSGT00940000165124.b.b	ENSGT00390000011368.b.a	ENSGT00940000155372.q
Common carp reference	MODERN SPECIES	35	ENSCCRG00000009619	ENSCCRG00000049044	rarres3l (ENSCCRG00000078946)	rarres3l (ENSCCRG00000010025)	rom1b (ENSCCRG00000051241)	ccdc88b (ENSCCRG00000082185)	macrod1 (ENSCCRG00000055938)	ENSCCRG00000079536	fermt3b (ENSCCRG00000017116)	slu7 (ENSCCRG00000023503)	ENSCCRG00000049554	NOCT (ENSCCRG00000017089) #19	elf2a (ENSCCRG00000017087) #20	mgarpa (ENSCCRG00000054287)	ndufc1 (ENSCCRG00000055485)	naa15a (ENSCCRG00000009551) #22	mlsl (ENSCCRG00000053088)	rab33ba (ENSCCRG00000081810) #25	zgc:113425 (ENSCCRG00000061528)	setd7 (ENSCCRG00000078105) #27	mgst2 (ENSCCRG00000059793) #30	ENSCCRG00000080767	ENSCCRG00000061918	ENSCCRG00000054905	ENSCCRG00000023396	cryba1l1 (ENSCCRG00000023401)	tmem33 (ENSCCRG00000058313)	ccna2 (ENSCCRG00000023383)	bbs7 (ENSCCRG00000023413)	anxa5a (ENSCCRG00000009376)	ENSCCRG00000017064
Goldfish	MODERN SPECIES	5	INTS5 (ENSCARG00000024522)	rarres3l (ENSCARG00000024467)	rarres3l (ENSCARG00000024451)	ENSCARG00000022482	ENSCARG00000022413	rom1b (ENSCARG00000022399)	ccdc88b (ENSCARG00000022379)	FLRT1 (ENSCARG00000022362)	macrod1 (ENSCARG00000022340)	fermt3b (ENSCARG00000022108)	slu7 (ENSCARG00000022015)	C1QTNF2 (ENSCARG00000021996)	NOCT (ENSCARG00000021986) #19	elf2a (ENSCARG00000021979) #20	ndufc1 (ENSCARG00000021976)	naa15a (ENSCARG00000019692) #22	rab33ba (ENSCARG00000019573) #25	zgc:113425 (ENSCARG00000019560)	setd7 (ENSCARG00000019552) #27	mgst2 (ENSCARG00000019546) #30	ENSCARG00000019537	ENSCARG00000019533	ENSCARG00000019514	cryba1l1 (ENSCARG00000019505)	tmem33 (ENSCARG00000019492)	ccna2 (ENSCARG00000019477)	bbs7 (ENSCARG00000019424)	anxa5a (ENSCARG00000019158)	fgfbp2a (ENSCARG00000019130)	prom1a (ENSCARG00000018340)	TAPT1 (ENSCARG00000017467)
Cyprininae	ANCESTRAL SPECIES	252	ENSGT00940000165913.d	ENSGT00940000159139.b.b.d	ENSGT00390000008374	ENSGT00940000162660.b.b.a.h.a.a	ENSGT00930000151054	ENSGT00940000159921.d.a	ENSGT00940000165784.h	ENSGT00940000159375.c.b.a	ENSGT00390000013444.a.b.b.b.a	ENSGT00390000002292.b.d	ENSGT00940000159591.d	ENSGT00940000155249.h.a #19	ENSGT00940000154953.a.a #20	ENSGT00940000170279	ENSGT00960000187553.a	ENSGT00950000183174.B.a.f.a.b #22	ENSGT00390000002932.a	ENSGT00940000157090.g.a #25	ENSGT00390000008183.e	ENSGT00390000004827.c #27	ENSGT00940000160288.h #30	ENSGT00940000164685.b.b	ENSGT00940000164963.c.a.a	ENSGT00940000165124.b.a	ENSGT00390000011368.b.b	ENSGT00940000155372.r
Goldfish	MODERN SPECIES	1028	GANAB (ENSCARG00000038120)	rarres3l (ENSCARG00000041488)	rarres3l (ENSCARG00000041508)	ENSCARG00000041615	rom1b (ENSCARG00000041868)	ccdc88b (ENSCARG00000041900)	ENSCARG00000041970	FLRT1 (ENSCARG00000039444)	fermt3b (ENSCARG00000039468)	slu7 (ENSCARG00000039817)	C1QTNF2 (ENSCARG00000040054)	NOCT (ENSCARG00000040095) #19	elf2a (ENSCARG00000040104) #20	ENSCARG00000040122	ndufc1 (ENSCARG00000040140)	naa15a (ENSCARG00000040351) #22	mlsl (ENSCARG00000044370)	rab33ba (ENSCARG00000044459) #25	zgc:113425 (ENSCARG00000044474)	setd7 (ENSCARG00000044509) #27	mgst2 (ENSCARG00000044549) #30	ENSCARG00000044566	ENSCARG00000044584	cryba1l1 (ENSCARG00000044610)	tmem33 (ENSCARG00000044626)	ccna2 (ENSCARG00000044731)	anxa5a (ENSCARG00000045035)	ENSCARG00000045258	fgfbp2a (ENSCARG00000045276)	prom1a (ENSCARG00000045724)	TAPT1 (ENSCARG00000054478)
Cyprininae_a	ANCESTRAL SPECIES	204	ENSGT00390000008374.e	ENSGT00940000162660.b.b.a.h.a.a.b	ENSGT00930000151054	ENSGT00940000159921.d.a	ENSGT00940000165784.h	ENSGT00940000159375.c.b.a	ENSGT00940000161450.f	ENSGT00390000013444.a.b.b.b.a	ENSGT00390000002292.b.d	ENSGT00940000159591.d	ENSGT00940000155249.h.a #19	ENSGT00940000154953.a.a #20	ENSGT00940000170279	ENSGT00960000187553.a	ENSGT00950000183174.B.a.f.b #22	ENSGT00950000183174.B.a.f.a.b #22	ENSGT00390000002932.a	ENSGT00940000157090.g.a #25	ENSGT00390000008183.e	ENSGT00390000004827.c #27	ENSGT00940000160288.h #30	ENSGT00940000164685.b.b	ENSGT00940000165124.b.a	ENSGT00940000164963.c.a.a	ENSGT00390000011368.b.b	ENSGT00940000155372.r	ENSGT00390000012346	ENSGT00940000155988.d.d	ENSGT00940000154372.a.b.b.c	ENSGT00940000154372.a.a.a.a	ENSGT00530000063586.b.c.b.a
Common carp reference	MODERN SPECIES	20	ehd1a (ENSCCRG00000082553)	ubxn1 (ENSCCRG00000074137)	ENSCCRG00000029317	ENSCCRG00000010019	ENSCCRG00000029359	ENSCCRG00000010074	rom1b (ENSCCRG00000010177)	ENSCCRG00000067929	FLRT1 (ENSCCRG00000062874)	macrod1 (ENSCCRG00000010196)	fermt3b (ENSCCRG00000010233)	slu7 (ENSCCRG00000017099)	ENSCCRG00000055504 #19	elf2a (ENSCCRG00000023489) #20	ndufc1 (ENSCCRG00000074773)	naa15a (ENSCCRG00000039676) #22	mlsl (ENSCCRG00000013653)	rab33ba (ENSCCRG00000065484) #25	zgc:113425 (ENSCCRG00000009499)	setd7 (ENSCCRG00000009468) #27	mgst2 (ENSCCRG00000013646) #30	ENSCCRG00000023288	cryba1l1 (ENSCCRG00000053998)	ENSCCRG00000023344	tmem33 (ENSCCRG00000023351)	ccna2 (ENSCCRG00000039766)	bbs7 (ENSCCRG00000016670)	anxa5a (ENSCCRG00000016678)	ENSCCRG00000080551	fgfbp2a (ENSCCRG00000055611)	prom1a (ENSCCRG00000020040)
Cyprininae	ANCESTRAL SPECIES	39	ENSGT00940000156457.r	ENSGT00940000165913.c	ENSGT00940000159139.b.b.c	ENSGT00880000138031.bb.b	ENSGT00940000159921.d.b	ENSGT00940000165784.g	ENSGT00940000161450	ENSGT00940000159375.c.b.b	ENSGT00390000013444.a.b.b.b.b	ENSGT00390000002292.b.c	ENSGT00940000159591.c	ENSGT00940000155249.h.b #19	ENSGT00940000154953.a.b #20	ENSGT00440000037338	ENSGT00960000187553.b	ENSGT00950000183174.B.a.f.b #22	ENSGT00390000002932.b	ENSGT00950000183174.B.a.f.a.a #22	ENSGT00940000157090.g.b #25	ENSGT00390000008183.f	ENSGT00390000004827.d #27	ENSGT00940000160288.g #30	ENSGT00940000164685.b.a	ENSGT00940000164963.c.a.b	ENSGT00940000165124.b.b	ENSGT00390000011368.b.a	ENSGT00940000155372.q	ENSGT00390000012346	ENSGT00940000155988.d.d	ENSGT00940000155988.d.c	ENSGT00940000154372.a.b.b
Cyprininae_a	ANCESTRAL SPECIES	204	ENSGT00940000159139.b.b.d	ENSGT00390000008374.e	ENSGT00940000162660.b.b.a.h.a.a.b	ENSGT00930000151054	ENSGT00940000159921.d.a	ENSGT00940000165784.h	ENSGT00940000159375.c.b.a	ENSGT00940000161450.f	ENSGT00390000013444.a.b.b.b.a	ENSGT00390000002292.b.d	ENSGT00940000159591.d	ENSGT00940000155249.h.a #19	ENSGT00940000154953.a.a #20	ENSGT00940000170279	ENSGT00960000187553.a	ENSGT00950000183174.B.a.f.b #22	ENSGT00950000183174.B.a.f.a.b #22	ENSGT00390000002932.a	ENSGT00940000157090.g.a #25	ENSGT00390000008183.e	ENSGT00390000004827.c #27	ENSGT00940000160288.h #30	ENSGT00940000164685.b.b	ENSGT00940000165124.b.a	ENSGT00940000164963.c.a.a	ENSGT00390000011368.b.b	ENSGT00940000155372.r	ENSGT00390000012346	ENSGT00940000155988.d.d	ENSGT00940000154372.a.b.b.c	ENSGT00940000154372.a.a.a.a
Golden-line barbel	DUPLICATION
Golden-line barbel	MODERN SPECIES	408	ubxn1 (ENSSGRG00000055258)	ENSSGRG00000055257	GANAB (ENSSGRG00000055238)	INTS5 (ENSSGRG00000055237)	rarres3l (ENSSGRG00000055236)	SCYL1 (ENSSGRG00000055217)	ccdc88b (ENSSGRG00000055214)	ENSSGRG00000055212	macrod1 (ENSSGRG00000055211)	FLRT1 (ENSSGRG00000055210)	fermt3b (ENSSGRG00000055209)	C1QTNF2 (ENSSGRG00000055207)	NOCT (ENSSGRG00000055206) #19	elf2a (ENSSGRG00000055205) #20	ndufc1 (ENSSGRG00000055203)	naa15a (ENSSGRG00000055170) #22	mlsl (ENSSGRG00000055165)	rab33ba (ENSSGRG00000055164) #25	zgc:113425 (ENSSGRG00000055163)	setd7 (ENSSGRG00000055162) #27	mgst2 (ENSSGRG00000055161) #30	ENSSGRG00000055160	ENSSGRG00000055159	cryba1l1 (ENSSGRG00000055158)	ENSSGRG00000055157	ENSSGRG00000055156	ccna2 (ENSSGRG00000055155)	anxa5a (ENSSGRG00000055153)	ENSSGRG00000055152	fgfbp2a (ENSSGRG00000055151)	prom1a (ENSSGRG00000055135)
Golden-line barbel	MODERN SPECIES	305	rarres3l (ENSSGRG00000022662)	ENSSGRG00000022661	rarres3l (ENSSGRG00000022633)	ENSSGRG00000022372	rom1b (ENSSGRG00000022361)	ccdc88b (ENSSGRG00000022357)	FLRT1 (ENSSGRG00000022355)	macrod1 (ENSSGRG00000022318)	fermt3b (ENSSGRG00000022232)	slu7 (ENSSGRG00000022192)	C1QTNF2 (ENSSGRG00000022191)	NOCT (ENSSGRG00000022190) #19	elf2a (ENSSGRG00000022189) #20	ENSSGRG00000022188	ndufc1 (ENSSGRG00000022187)	naa15a (ENSSGRG00000020840) #22	mlsl (ENSSGRG00000020828)	rab33ba (ENSSGRG00000020826) #25	zgc:113425 (ENSSGRG00000020825)	ENSSGRG00000020823	ENSSGRG00000020821	tmem33 (ENSSGRG00000020816)	ccna2 (ENSSGRG00000020815)	bbs7 (ENSSGRG00000020636)	anxa5a (ENSSGRG00000020622)	prom1a (ENSSGRG00000019249)	TAPT1 (ENSSGRG00000019209)	ldb2a (ENSSGRG00000019207)	qdpra (ENSSGRG00000019159)	fstl5 (ENSSGRG00000019157)
Zebrafish	MODERN SPECIES	5	si:ch211-276i12.9 (ENSDARG00000079150)	ENSDARG00000105412	ENSDARG00000100956	rom1b (ENSDARG00000026926)	ENSDARG00000101564	ccdc88b (ENSDARG00000076189)	macrod1 (ENSDARG00000029609)	FLRT1 (ENSDARG00000075597)	fermt3b (ENSDARG00000030938)	slu7 (ENSDARG00000038870)	C1QTNF2 (ENSDARG00000059944)	NOCT (ENSDARG00000077726) #19	elf2a (ENSDARG00000019459) #20	mgarpa (ENSDARG00000071353)	ndufc1 (ENSDARG00000103101)	naa15a (ENSDARG00000003213) #22	mlsl (ENSDARG00000074684)	rab33ba (ENSDARG00000052290) #25	zgc:113425 (ENSDARG00000026616)	setd7 (ENSDARG00000038858) #27	mgst2 (ENSDARG00000071345) #30	ENSDARG00000105411	ENSDARG00000052277	ENSDARG00000105351	ENSDARG00000105494	ENSDARG00000007576	cryba1l1 (ENSDARG00000032929)	tmem33 (ENSDARG00000041332)	ccna2 (ENSDARG00000011094)	bbs7 (ENSDARG00000059911)	anxa5a (ENSDARG00000026406)
Clupeiformes	ANCESTRAL SPECIES	205	ENSGT00500000044831.a.a.b	ENSGT00940000158850	ENSGT00940000154444.B	ENSGT00940000165241	ENSGT00440000033329.a.a.a	ENSGT00940000154617.A.a.b	ENSGT00390000015138	ENSGT00390000000436	ENSGT01030000234904	ENSGT00940000158277.a #11	ENSGT00940000156295.h #15	ENSGT00940000166427	ENSGT00940000155249.h #19	ENSGT00940000154953.a #20	ENSGT01050000248134	ENSGT00950000183174.B.a.f #22	ENSGT00390000002932	ENSGT00940000157090.g #25	ENSGT00390000008183	ENSGT00390000004827 #27	ENSGT00390000008828.fb.a #32	ENSGT00940000156526.b	ENSGT00940000159799
Atlantic herring	MODERN SPECIES	12	ENSCHAG00000012700	ENSCHAG00000012706	sh3bgrl (ENSCHAG00000012887)	ENSCHAG00000013023	TENT5D (ENSCHAG00000013070)	ENSCHAG00000013094	TBX22 (ENSCHAG00000013451)	ITM2A (ENSCHAG00000013486)	ENSCHAG00000013492	p2ry10 (ENSCHAG00000013500)	LPAR4 (ENSCHAG00000013513)	cysltr1 (ENSCHAG00000013522)	NOCT (ENSCHAG00000013533) #19	elf2a (ENSCHAG00000013545) #20	ENSCHAG00000013571	naa15a (ENSCHAG00000013603) #22	mlsl (ENSCHAG00000014181)	rab33ba (ENSCHAG00000014462) #25	zgc:113425 (ENSCHAG00000014476)	setd7 (ENSCHAG00000014492) #27	ENSCHAG00000014536	SCOC (ENSCHAG00000014548) #32	zgc:154054 (ENSCHAG00000014586)	ENSCHAG00000014661	ITLN1 (ENSCHAG00000014783)	ENSCHAG00000014809	ENSCHAG00000014823	polr1d (ENSCHAG00000014826)	ENSCHAG00000014843	rraga (ENSCHAG00000014932)	cysltr1 (ENSCHAG00000015042)
Euteleosteomorpha	ANCESTRAL SPECIES	107	ENSGT00940000158417.a	ENSGT00940000158062.f.b	ENSGT00940000156892.a	ENSGT00940000154617.A.a.b	ENSGT00390000015138	ENSGT00390000000436	ENSGT00980000198976	ENSGT00940000158277.a #11	ENSGT00940000156295.h #15	ENSGT00940000166427	ENSGT00940000155249.h #19	ENSGT00940000154953.a #20	ENSGT00440000037338	ENSGT00390000002932	ENSGT00940000175899	ENSGT00950000183174.B.a.f #22	ENSGT00940000157090.g #25	ENSGT00390000008183	ENSGT00390000004827 #27	ENSGT00940000160288 #30	ENSGT00390000008828.fb.a #32	ENSGT00940000156526.b	ENSGT00510000050125.a	ENSGT00940000159799	ENSGT00390000005922.b	ENSGT00940000159225	ENSGT00940000165282.a
Acanthomorphata	ANCESTRAL SPECIES	153	ENSGT00510000046732.B	ENSGT00940000160541	ENSGT00390000006550	ENSGT00520000055589.d.b	ENSGT00520000055589.d.a.a	ENSGT00940000158457	ENSGT00940000158277.a #11	ENSGT01030000234904	ENSGT00980000198976	ENSGT00940000156295.h #15	ENSGT00940000166427	ENSGT00940000155249.h #19	ENSGT00940000154953.a #20	ENSGT00440000037338	ENSGT00940000175899	ENSGT00950000183174.B.a.f #22	ENSGT00390000002932	ENSGT00940000157090.g #25	ENSGT00390000008183	ENSGT00390000004827 #27	ENSGT00940000160288 #30	ENSGT00390000008828.fb.a #32	ENSGT00940000156526.b	ENSGT00940000159799	ENSGT00390000005922.b	ENSGT00940000159225	ENSGT00940000165282.a
Euacanthomorphacea	ANCESTRAL SPECIES	63	ENSGT00940000160541	ENSGT00390000006550	ENSGT00520000055589.d.b	ENSGT00520000055589.d.a.a	ENSGT00940000158457	ENSGT00940000158277.a #11	ENSGT01030000234904	ENSGT00980000198976	ENSGT00940000156295.h #15	ENSGT00940000166427	ENSGT00940000155249.h #19	ENSGT00940000154953.a #20	ENSGT00440000037338	ENSGT00940000170279	ENSGT00940000175899	ENSGT00950000183174.B.a.f #22	ENSGT00390000002932	ENSGT00940000157090.g #25	ENSGT00390000008183	ENSGT00390000004827 #27	ENSGT00940000160288 #30	ENSGT00390000008828.fb.a #32	ENSGT00940000156526.b
Percomorphaceae	ANCESTRAL SPECIES	110		ENSGT00390000008738	ENSGT00390000002313	ENSGT00940000158825.d	ENSGT00940000158277.a #11	ENSGT01030000234904	ENSGT00980000198976	ENSGT00940000156295.h #15	ENSGT00940000166427	ENSGT00940000155249.h #19	ENSGT00940000154953.a #20	ENSGT00440000037338	ENSGT00990000203833	ENSGT00940000170279	ENSGT00940000175899	ENSGT00950000183174.B.a.f #22	ENSGT00390000002932
Percomorphaceae_B	ANCESTRAL SPECIES	14	ENSGT00390000008738	ENSGT00390000002313	ENSGT00940000158825.d	ENSGT00940000158277.a #11	ENSGT01030000234904	ENSGT00980000198976	ENSGT00940000156295.h #15	ENSGT00940000166427	ENSGT00940000155249.h #19	ENSGT00940000154953.a #20	ENSGT00440000037338	ENSGT00940000177743	ENSGT00990000203833	ENSGT00940000170279	ENSGT00940000175899	ENSGT00950000183174.B.a.f #22	ENSGT00390000002932	ENSGT00390000005922.b	ENSGT00940000159225	ENSGT00940000165282.a	ENSGT00390000010980	ENSGT00940000159403	ENSGT00570000079101.a.b	ENSGT00940000162861	ENSGT00940000164256	ENSGT00940000153909.b	ENSGT00510000047951	ENSGT00390000006550	ENSGT00940000160541	ENSGT00510000046732.B	ENSGT00940000159799
Ovalentaria	ANCESTRAL SPECIES	15	ENSGT00390000009871	ENSGT00390000008738	ENSGT00390000002313	ENSGT00940000158825.d	ENSGT00980000198976	ENSGT00940000158277.a #11	ENSGT00940000156295.h #15	ENSGT00940000166427	ENSGT00940000155249.h #19	ENSGT00940000154953.a #20	ENSGT00440000037338	ENSGT00940000177743	ENSGT00990000203833	ENSGT00940000170279	ENSGT00940000175899	ENSGT00950000183174.B.a.f #22	ENSGT00390000002932	ENSGT00390000005922.b	ENSGT00940000159225	ENSGT00940000165282.a	ENSGT00390000010980	ENSGT00940000159403	ENSGT00570000079101.a.b	ENSGT00940000162861	ENSGT00940000164256	ENSGT00940000153909.b	ENSGT00510000047951	ENSGT00390000006550	ENSGT00940000175226	ENSGT00940000160541	ENSGT00510000046732.B
Atherinomorphae	ANCESTRAL SPECIES	9	ENSGT00390000002414	ENSGT00390000002313	ENSGT00390000008738	ENSGT00390000009871	ENSGT00980000198976	ENSGT00940000158277.a #11	ENSGT00940000156295.h #15	ENSGT00940000166427	ENSGT00940000155249.h #19	ENSGT00940000154953.a #20	ENSGT00440000037338	ENSGT00940000177743	ENSGT00990000203833	ENSGT00940000170279	ENSGT00940000175899	ENSGT00950000183174.B.a.f #22	ENSGT00390000002932	ENSGT00390000005922.b	ENSGT00940000159225	ENSGT00940000165282.a	ENSGT00390000010980	ENSGT00940000159403	ENSGT00570000079101.a.b	ENSGT00940000162861	ENSGT00940000164256	ENSGT00940000153909.b	ENSGT00510000047951	ENSGT00390000006550	ENSGT00940000175226	ENSGT00940000160541	ENSGT00510000046732.B
Cyprinodontiformes	ANCESTRAL SPECIES	8	ENSGT00970000197643	ENSGT00390000014635.f	ENSGT00390000009871	ENSGT00390000002313	ENSGT00390000008738	ENSGT00980000198976	ENSGT00940000158277.a #11	ENSGT00940000156295.h #15	ENSGT00940000166427	ENSGT00940000155249.h #19	ENSGT00940000154953.a #20	ENSGT00440000037338	ENSGT00990000203833	ENSGT00940000170279	ENSGT00940000175899	ENSGT00950000183174.B.a.f #22	ENSGT00390000002932	ENSGT00390000005922.b	ENSGT00940000159225	ENSGT00940000165282.a	ENSGT00390000010980	ENSGT00940000159403	ENSGT00570000079101.a.b	ENSGT00940000162861	ENSGT00940000164256	ENSGT00940000153909.b	ENSGT00510000047951	ENSGT00390000006550	ENSGT00940000160541	ENSGT00510000046732.B	ENSGT00940000159799
Cyprinodontoidei	ANCESTRAL SPECIES	19	ENSGT00390000014635.f	ENSGT00390000009871	ENSGT00390000002313	ENSGT00390000008738	ENSGT00980000198976	ENSGT00940000158277.a #11	ENSGT00940000156295.h #15	ENSGT00940000166427	ENSGT00940000155249.h #19	ENSGT00940000154953.a #20	ENSGT00440000037338	ENSGT00940000177743	ENSGT00990000203833	ENSGT00940000170279	ENSGT00940000175899	ENSGT00950000183174.B.a.f #22	ENSGT00390000002932	ENSGT00390000005922.b	ENSGT00940000159225	ENSGT00940000165282.a	ENSGT00390000010980	ENSGT00940000159403	ENSGT00570000079101.a.b	ENSGT00940000162861	ENSGT00940000164256	ENSGT00940000153909.b	ENSGT00510000047951	ENSGT00390000006550	ENSGT00940000160541	ENSGT00510000046732.B	ENSGT00940000159799
Poeciliinae	ANCESTRAL SPECIES	11	ENSGT00970000197643	ENSGT00390000014635.f	ENSGT00390000009871	ENSGT00390000002313	ENSGT00390000008738	ENSGT00980000198976	ENSGT00940000158277.a #11	ENSGT00940000156295.h #15	ENSGT00940000166427	ENSGT00940000155249.h #19	ENSGT00940000154953.a #20	ENSGT00440000037338	ENSGT00940000177743	ENSGT00990000203833	ENSGT00940000175899	ENSGT00950000183174.B.a.f #22	ENSGT00390000002932	ENSGT00390000005922.b	ENSGT00940000159225	ENSGT00940000165282.a	ENSGT00390000010980	ENSGT00940000159403	ENSGT00570000079101.a.b	ENSGT00940000162861	ENSGT00940000164256	ENSGT00940000153909.b	ENSGT00510000047951	ENSGT00390000006550	ENSGT00940000160541	ENSGT00510000046732.B	ENSGT00940000159799
Poecilia	ANCESTRAL SPECIES	113										ENSGT00940000155249.h #19	ENSGT00940000154953.a #20	ENSGT00440000037338	ENSGT00940000177743	ENSGT00990000203833	ENSGT00940000175899	ENSGT00950000183174.B.a.f #22	ENSGT00390000002932	ENSGT00390000005922.b	ENSGT00940000159225	ENSGT00940000165282.a
NAME_6	ANCESTRAL SPECIES	416												ENSGT00940000155249.h #19	ENSGT00940000154953.a #20	ENSGT00440000037338	ENSGT00940000175899	ENSGT00950000183174.B.a.f #22	ENSGT00390000002932	ENSGT00390000005922.b	ENSGT00940000159225
Sailfin molly	MODERN SPECIES	1474												NOCT (ENSPLAG00000004749) #19	elf2a (ENSPLAG00000004740) #20	ENSPLAG00000004714	ENSPLAG00000004704	naa15a (ENSPLAG00000004693) #22	mlsl (ENSPLAG00000004641)
Amazon molly	MODERN SPECIES	647													NOCT (ENSPFOG00000004800) #19	elf2a (ENSPFOG00000004830) #20	ENSPFOG00000024803	naa15a (ENSPFOG00000004910) #22	mlsl (ENSPFOG00000022483)	mlsl (ENSPFOG00000005213)	hars (ENSPFOG00000005415)	dnd1 (ENSPFOG00000005620)	ENSPFOG00000023359	ENSPFOG00000022288	ENSPFOG00000005652	ENSPFOG00000005668	ENSPFOG00000022824	gfra3 (ENSPFOG00000005683)
Guppy	MODERN SPECIES	440	ogt.2 (ENSPREG00000007076)	gcna (ENSPREG00000007051)	ENSPREG00000007030	nsdhl (ENSPREG00000007018)	fut11 (ENSPREG00000006989)	RAB9B (ENSPREG00000006970)	plp1a (ENSPREG00000006947)	pcdh20 (ENSPREG00000006932)	si:dkey-27i16.2 (ENSPREG00000006921)	nlgn3a (ENSPREG00000006911)	ENSPREG00000006891	NOCT (ENSPREG00000006876) #19	ENSPREG00000006863	ENSPREG00000006849	ENSPREG00000006839	naa15a (ENSPREG00000006781) #22	mlsl (ENSPREG00000006745)	hars (ENSPREG00000006703)	ENSPREG00000006548	gfra3 (ENSPREG00000006502)	ENSPREG00000006496	LRRTM2 (ENSPREG00000006483)	ctnna1 (ENSPREG00000006377)	ENSPREG00000006355	tspan17 (ENSPREG00000006323)	ENSPREG00000006301	dctn4 (ENSPREG00000006250)	ENSPREG00000006230	gpx3 (ENSPREG00000006217)	tnip1 (ENSPREG00000006127)	anxa6 (ENSPREG00000006058)
Platyfish	MODERN SPECIES	15	ENSXMAG00000027084	immt (ENSXMAG00000012834)	ENSXMAG00000001331	ENSXMAG00000024893	pcdh10b (ENSXMAG00000023159) #11	ENSXMAG00000021274	pcdh18b (ENSXMAG00000016798) #15	ENSXMAG00000010874	ENSXMAG00000028580	NOCT (ENSXMAG00000029143) #19	ENSXMAG00000029890	ENSXMAG00000024001	ENSXMAG00000010916	ENSXMAG00000028309	ENSXMAG00000024387	naa15a (ENSXMAG00000010918) #22	mlsl (ENSXMAG00000010936)	hars (ENSXMAG00000010938)	dnd1 (ENSXMAG00000017784)	gfra3 (ENSXMAG00000026622)	zgc:153146 (ENSXMAG00000010953)	hvcn1 (ENSXMAG00000010956)	ENSXMAG00000010962	nkx1.2lb (ENSXMAG00000017541)	uvssa (ENSXMAG00000010972)	ENSXMAG00000010975	spdl1 (ENSXMAG00000010982)	trappc11 (ENSXMAG00000010987)	ENSXMAG00000023092	ENSXMAG00000011012	ENSXMAG00000004692
NAME_4	ANCESTRAL SPECIES	347												ENSGT00940000155249.h #19	ENSGT00940000154953.a #20	ENSGT00940000170279	ENSGT00940000175899	ENSGT00950000183174.B.a.f #22	ENSGT00390000002932	ENSGT00390000005922.b	ENSGT00940000159225
Mummichog	MODERN SPECIES	736												NOCT (ENSFHEG00000005067) #19	elf2a (ENSFHEG00000005055) #20	ENSFHEG00000004977	ENSFHEG00000004954	naa15a (ENSFHEG00000004933) #22	mlsl (ENSFHEG00000004832)	hars (ENSFHEG00000004792)	ENSFHEG00000000128
Ovalentaria_B	ANCESTRAL SPECIES	41						ENSGT00980000198976	ENSGT00940000158277.a #11	ENSGT00940000156295.h #15	ENSGT00940000166427	ENSGT00940000155249.h #19	ENSGT00940000154953.a #20	ENSGT00440000037338	ENSGT00940000177743	ENSGT00990000203833	ENSGT00940000175899	ENSGT00950000183174.B.a.f #22	ENSGT00390000002932	ENSGT00390000005922.b	ENSGT00940000159225	ENSGT00940000165282.a	ENSGT00940000159403	ENSGT00570000079101.a.b	ENSGT00940000177596	ENSGT00940000162861	ENSGT00940000164256	ENSGT00940000153909.b	ENSGT00510000047951	ENSGT00390000006550	ENSGT00940000175226	ENSGT00940000160541	ENSGT00510000046732.B
Cichlidae	ANCESTRAL SPECIES	73													ENSGT00940000154953.a #20	ENSGT00990000203833	ENSGT00940000175899	ENSGT00950000183174.B.a.f #22	ENSGT00390000002932	ENSGT00990000205617	ENSGT00390000005922.b	ENSGT00940000159225	ENSGT00940000165282.a	ENSGT00940000161248	ENSGT00920000149123.d	ENSGT00940000157090.g #25	ENSGT00390000008183	ENSGT00390000004827 #27	ENSGT00940000160288 #30	ENSGT00390000008828.fb.a #32	ENSGT00940000156526.b	ENSGT00940000159799	ENSGT00510000046732.B
Pseudocrenilabrinae	ANCESTRAL SPECIES	41	ENSGT00390000013284	ENSGT00940000161151	ENSGT00390000014635	ENSGT00390000006413	ENSGT00390000012030.b.a	ENSGT00390000002414	ENSGT00390000013163	ENSGT00940000153700	ENSGT01030000234957	ENSGT00520000055589.d.a.a	ENSGT00940000158457	ENSGT00940000154953.a #20	ENSGT00940000177743	ENSGT00990000203833	ENSGT00940000175899	ENSGT00950000183174.B.a.f #22	ENSGT00390000002932	ENSGT00990000205617	ENSGT00390000005922.b	ENSGT00940000159225	ENSGT00940000179805	ENSGT00510000049866.g.a.a.a	ENSGT00940000157090.g #25	ENSGT00390000008183	ENSGT00390000004827 #27	ENSGT00940000160288 #30	ENSGT00390000008828.fb.a #32	ENSGT00940000156526.b	ENSGT00940000159799	ENSGT00510000046732.B	ENSGT00940000160541
Nile tilapia	MODERN SPECIES	11	ENSONIG00000042974	ENSONIG00000042178	abhd18 (ENSONIG00000017475)	rnf103 (ENSONIG00000017479)	magt1 (ENSONIG00000017482)	igbp1 (ENSONIG00000011522)	FBXO38 (ENSONIG00000011523)	csnk1a1 (ENSONIG00000011528)	ENSONIG00000029967	STOX2 (ENSONIG00000011533)	ENSONIG00000038886	enpp6 (ENSONIG00000011534)	ENSONIG00000029557 #20	ENSONIG00000032090	ENSONIG00000043068	naa15a (ENSONIG00000011538) #22	mlsl (ENSONIG00000011547)	ENSONIG00000037440	ENSONIG00000037021	ENSONIG00000035619	ENSONIG00000032092	pde6a (ENSONIG00000004214)	SLC26A2 (ENSONIG00000004222)	ENSONIG00000037809	ENSONIG00000039130	HTR4 (ENSONIG00000004225)	SLITRK2 (ENSONIG00000021252)	hspa9 (ENSONIG00000004081)	ENSONIG00000028405	hars (ENSONIG00000011548)	ENSONIG00000038275
Pseudocrenilabrinae_A	ANCESTRAL SPECIES	48	ENSGT00390000013284	ENSGT00940000161151	ENSGT00390000014635	ENSGT00390000006413	ENSGT00390000012030.b.a	ENSGT00390000002414	ENSGT00390000013163	ENSGT00940000153700	ENSGT01030000234957	ENSGT00520000055589.d.a.a	ENSGT00940000158457	ENSGT00940000154953.a #20	ENSGT00940000177743	ENSGT00990000203833	ENSGT00940000175899	ENSGT00950000183174.B.a.f #22	ENSGT00390000002932	ENSGT00990000205617	ENSGT00390000005922.b	ENSGT00940000159225	ENSGT00940000179805	ENSGT00510000049866.g.a.a.a	ENSGT00940000157090.g #25	ENSGT00390000008183	ENSGT00390000004827 #27	ENSGT00940000160288 #30	ENSGT00390000008828.fb.a #32	ENSGT00940000156526.b	ENSGT00940000159799	ENSGT00510000046732.B	ENSGT00940000160541
Haplochromini	ANCESTRAL SPECIES	25	ENSGT00390000013284	ENSGT00940000161151	ENSGT00390000014635	ENSGT00390000006413	ENSGT00390000012030.b.a	ENSGT00390000002414	ENSGT00390000013163	ENSGT00940000153700	ENSGT01030000234957	ENSGT00520000055589.d.a.a	ENSGT00940000158457	ENSGT00940000154953.a #20	ENSGT00940000177743	ENSGT00990000203833	ENSGT00940000175899	ENSGT00950000183174.B.a.f #22	ENSGT00390000002932	ENSGT00390000005922.b	ENSGT00940000159225	ENSGT00940000165282.a	ENSGT00510000049866.g.a.a.a	ENSGT00940000157090.g #25	ENSGT00390000008183	ENSGT00390000004827 #27	ENSGT00940000160288 #30	ENSGT00390000008828.fb.a #32	ENSGT00940000156526.b	ENSGT00940000159799	ENSGT00510000046732.B	ENSGT00940000160541	ENSGT00390000006550
Haplochromini_A	ANCESTRAL SPECIES	28	ENSGT00390000013284	ENSGT00940000161151	ENSGT00390000014635	ENSGT00390000006413	ENSGT00390000012030.b.a	ENSGT00390000002414	ENSGT00390000013163	ENSGT00940000153700	ENSGT01030000234957	ENSGT00520000055589.d.a.a	ENSGT00940000158457	ENSGT00940000154953.a #20	ENSGT00940000177743	ENSGT00990000203833	ENSGT00940000175899	ENSGT00950000183174.B.a.f #22	ENSGT00390000020792.F.e	ENSGT00390000002932	ENSGT00390000005922.b	ENSGT00940000159225	ENSGT00940000165282.a	ENSGT00510000049866.g.a.a.a	ENSGT00940000157090.g #25	ENSGT00390000008183	ENSGT00390000004827 #27	ENSGT00940000160288 #30	ENSGT00390000008828.fb.a #32	ENSGT00940000156526.b	ENSGT00940000159799	ENSGT00510000046732.B	ENSGT00940000160541
P. nyererei	MODERN SPECIES	624										STOX2 (ENSPNYG00000016979)	enpp6 (ENSPNYG00000017117)	ENSPNYG00000017252 #20	ENSPNYG00000017301	ENSPNYG00000017341	ENSPNYG00000017373	naa15a (ENSPNYG00000017440) #22	ENSPNYG00000017666	mlsl (ENSPNYG00000017738)	hars (ENSPNYG00000017946)	dnd1 (ENSPNYG00000018115)	gfra3 (ENSPNYG00000018241)
Haplochromini_B	ANCESTRAL SPECIES	68	ENSGT00390000008738	ENSGT00390000009871	ENSGT00390000013284.c	ENSGT00940000161151	ENSGT00390000014635	ENSGT00390000006413	ENSGT00390000012030.b.a	ENSGT00390000002414	ENSGT00390000013163	ENSGT00940000153700	ENSGT01030000234957	ENSGT00520000055589.d.a.a	ENSGT00940000158457	ENSGT00940000154953.a #20	ENSGT00940000175899	ENSGT00950000183174.B.a.f #22	ENSGT00390000020792.F.e	ENSGT00390000002932	ENSGT00390000005922.b	ENSGT00940000159225	ENSGT00940000165282.a	ENSGT01100000263636.c.a.a	ENSGT00510000049866.g.a.a.a	ENSGT00940000157090.g #25	ENSGT00390000008183	ENSGT00390000004827 #27	ENSGT00940000160288 #30	ENSGT00390000008828.fb.a #32	ENSGT00940000156526.b	ENSGT00940000159799	ENSGT00510000046732.B
Zebra mbuna	MODERN SPECIES	1102	ENSMZEG00005017261	ENSMZEG00005017266	tmem129 (ENSMZEG00005017272)	ENSMZEG00005017274	abhd18 (ENSMZEG00005017279)	rnf103 (ENSMZEG00005017289)	magt1 (ENSMZEG00005017296)	igbp1 (ENSMZEG00005017300)	FBXO38 (ENSMZEG00005017310)	csnk1a1 (ENSMZEG00005017333)	ENSMZEG00005017343	STOX2 (ENSMZEG00005017346)	enpp6 (ENSMZEG00005017351)	ENSMZEG00005017353 #20	ENSMZEG00005017360	naa15a (ENSMZEG00005017368) #22	ENSMZEG00005017388	mlsl (ENSMZEG00005017393)	hars (ENSMZEG00005017419)	ENSMZEG00005017434	dnd1 (ENSMZEG00005017442)	gfra3 (ENSMZEG00005017454)	ENSMZEG00005017462	pcdh18b (ENSMZEG00005017468) #15	ENSMZEG00005017476	ENSMZEG00005017482	ENSMZEG00005017486	ENSMZEG00005017495	ENSMZEG00005017524	ENSMZEG00005017557	ENSMZEG00005017562
Eastern happy	MODERN SPECIES	11	tmem129 (ENSACLG00000007010)	tmem129 (ENSACLG00000007001)	ENSACLG00000006995	abhd18 (ENSACLG00000006974)	rnf103 (ENSACLG00000006946)	magt1 (ENSACLG00000006930)	igbp1 (ENSACLG00000006914)	FBXO38 (ENSACLG00000006846)	csnk1a1 (ENSACLG00000006794)	ENSACLG00000006792	ENSACLG00000006783	STOX2 (ENSACLG00000006760)	enpp6 (ENSACLG00000006744)	ENSACLG00000006740 #20	ENSACLG00000006642	naa15a (ENSACLG00000006578) #22	mlsl (ENSACLG00000006518)	hars (ENSACLG00000006420)	ENSACLG00000006400	dnd1 (ENSACLG00000006388)	gfra3 (ENSACLG00000006382)	ENSACLG00000005747	ENSACLG00000005732	ENSACLG00000005729	ENSACLG00000005724	rab33ba (ENSACLG00000005720) #25	zgc:113425 (ENSACLG00000005704)	setd7 (ENSACLG00000005686) #27	mgst2 (ENSACLG00000005667) #30	zgc:154054 (ENSACLG00000005382)	ENSACLG00000004555
Burton s mouthbrooder	MODERN SPECIES	702	ENSHBUG00000003338	ENSHBUG00000003325	tmem129 (ENSHBUG00000003311)	ENSHBUG00000003281	abhd18 (ENSHBUG00000003275)	rnf103 (ENSHBUG00000003231)	magt1 (ENSHBUG00000003200)	FBXO38 (ENSHBUG00000003179)	csnk1a1 (ENSHBUG00000003142)	ENSHBUG00000003099	STOX2 (ENSHBUG00000003075)	enpp6 (ENSHBUG00000003067)	ENSHBUG00000003038	ENSHBUG00000003026	ENSHBUG00000003016	naa15a (ENSHBUG00000002981) #22	ENSHBUG00000002947	mlsl (ENSHBUG00000002911)	hars (ENSHBUG00000002787)
Lyretail cichlid	MODERN SPECIES	396	ENSNBRG00000005941	ENSNBRG00000006044	ENSNBRG00000006071	tmem129 (ENSNBRG00000006116)	ENSNBRG00000006151	abhd18 (ENSNBRG00000006156)	rnf103 (ENSNBRG00000006192)	magt1 (ENSNBRG00000006224)	igbp1 (ENSNBRG00000006269)	FBXO38 (ENSNBRG00000006321)	csnk1a1 (ENSNBRG00000006478)	STOX2 (ENSNBRG00000006526)	enpp6 (ENSNBRG00000006546)	ENSNBRG00000006572	ENSNBRG00000006598	NAA15 (ENSNBRG00000006656) #22	mlsl (ENSNBRG00000006967)	ENSNBRG00000007012	hars (ENSNBRG00000007020)	dnd1 (ENSNBRG00000007036)	ENSNBRG00000007058	rab33ba (ENSNBRG00000007077) #25	zgc:113425 (ENSNBRG00000007089)	ENSNBRG00000007106	setd7 (ENSNBRG00000007120) #27	mgst2 (ENSNBRG00000007130) #30	SCOC (ENSNBRG00000007136) #32	zgc:154054 (ENSNBRG00000007144)	ENSNBRG00000007200	ENSNBRG00000007382	ENSNBRG00000007409
Midas cichlid	MODERN SPECIES	471					ENSACIG00000015835	gas1a (ENSACIG00000015819)	tars1 (ENSACIG00000015719)	TMEM8B (ENSACIG00000015679)	mccc2 (ENSACIG00000015634)	ENSACIG00000015583	psat1 (ENSACIG00000015560)	elf2a (ENSACIG00000015521) #20	ENSACIG00000015511	mgarpa (ENSACIG00000015492)	ENSACIG00000015478	naa15a (ENSACIG00000015432) #22	mlsl (ENSACIG00000015399)	ENSACIG00000015388	hars (ENSACIG00000015362)
Pomacentridae	ANCESTRAL SPECIES	58								ENSGT00940000156295.h #15	ENSGT00940000166427	ENSGT00940000155249.h #19	ENSGT00940000154953.a #20	ENSGT00440000037338	ENSGT00990000203833	ENSGT00940000170279	ENSGT00940000175899	ENSGT00950000183174.B.a.f #22	ENSGT00390000002932	ENSGT00390000005922.b	ENSGT00940000159225	ENSGT00940000165282.a.f	ENSGT00940000165282.a.e	ENSGT00940000159403	ENSGT00570000079101.a.b.c	ENSGT00940000177596	ENSGT00570000079101.a.b.d	ENSGT00940000162861	ENSGT00940000164256	ENSGT00940000153909.b	ENSGT00940000160403	ENSGT00390000003288	ENSGT00510000048167.b.b
Pomacentridae_A	ANCESTRAL SPECIES	175								ENSGT00940000156295.h #15	ENSGT00940000166427	ENSGT00940000155249.h #19	ENSGT00940000154953.a #20	ENSGT00440000037338	ENSGT00990000203833	ENSGT00940000170279	ENSGT00940000175899	ENSGT00950000183174.B.a.f #22	ENSGT00940000159937	ENSGT00940000157174.d	ENSGT00940000154658.b.i.a	ENSGT00950000183018.b	ENSGT00390000001695	ENSGT00940000155341	ENSGT00940000155244.d	ENSGT00940000153596.A	ENSGT00940000164810	ENSGT00530000063860.a
Amphiprion	ANCESTRAL SPECIES	177									ENSGT00940000156295.h #15	ENSGT00940000166427	ENSGT00940000155249.h #19	ENSGT00940000154953.a #20	ENSGT00940000170279	ENSGT00440000037338	ENSGT00940000175899	ENSGT00950000183174.B.a.f #22	ENSGT00940000159937	ENSGT00940000157174.d	ENSGT00940000154658.b.i.a	ENSGT00950000183018.b	ENSGT00390000001695	ENSGT00940000155341	ENSGT00940000155244.d	ENSGT00940000153596.A	ENSGT00940000164810	ENSGT00530000063860.a	ENSGT00940000158869	ENSGT01050000244840.A.b.a	ENSGT00940000158554	ENSGT00950000182912.b.a.b.b	ENSGT00940000157465
Orange clownfish	MODERN SPECIES	4	immt (ENSAPEG00000017673)	ENSAPEG00000017702	rnf103 (ENSAPEG00000017726)	abhd18 (ENSAPEG00000017771)	ENSAPEG00000017821	pcdh10b (ENSAPEG00000017844) #11	ENSAPEG00000017898	ENSAPEG00000017913	pcdh18b (ENSAPEG00000017972) #15	ENSAPEG00000018026	NOCT (ENSAPEG00000018097) #19	ENSAPEG00000018103 #20	ENSAPEG00000018123	ENSAPEG00000018158	ENSAPEG00000018167	naa15a (ENSAPEG00000018184) #22	TBC1D2 (ENSAPEG00000018228)	SLC44A1 (ENSAPEG00000018244)	ENSAPEG00000018300	ABCA1 (ENSAPEG00000018330)	nipsnap3a (ENSAPEG00000018440)	noa1 (ENSAPEG00000018447)	rest (ENSAPEG00000018458)	b4galt1l (ENSAPEG00000018474)	exosc3 (ENSAPEG00000018485)	ENSAPEG00000018499	tgfbi (ENSAPEG00000018521)	ARAP3 (ENSAPEG00000018580)	F2RL3 (ENSAPEG00000018898)	TBC1D9B (ENSAPEG00000018920)	ENSAPEG00000019022
Clown anemonefish	MODERN SPECIES	1298								ENSAOCG00000014193	ENSAOCG00000014182	pcdh18b (ENSAOCG00000014155) #15	ENSAOCG00000000919	NOCT (ENSAOCG00000014089) #19	elf2a (ENSAOCG00000014079) #20	mgarpa (ENSAOCG00000000900)	ENSAOCG00000014037	naa15a (ENSAOCG00000014023) #22	ENSAOCG00000013941	ENSAOCG00000013928	ENSAOCG00000001860	SLC44A1 (ENSAOCG00000013900)
Spiny chromis	MODERN SPECIES	1637												NOCT (ENSAPOG00000016421) #19	ENSAPOG00000016417	ENSAPOG00000016404	ENSAPOG00000016391	naa15a (ENSAPOG00000016382) #22	TBC1D2 (ENSAPOG00000016280)
Bicolor damselfish	MODERN SPECIES	876											NOCT (ENSSPAG00000023537) #19	ENSSPAG00000023536	elf2a (ENSSPAG00000023531) #20	ENSSPAG00000023529	ENSSPAG00000023527	naa15a (ENSSPAG00000023526) #22	mlsl (ENSSPAG00000023524)	hars (ENSSPAG00000023522)	dnd1 (ENSSPAG00000023520)	gfra3 (ENSSPAG00000023518)
Percomorphaceae_C	ANCESTRAL SPECIES	16	ENSGT00940000153700	ENSGT01030000234957	ENSGT00520000055589.d.a.a	ENSGT00940000158457	ENSGT00940000158277.a #11	ENSGT00980000198976	ENSGT00940000156295.h #15	ENSGT00940000166427	ENSGT00940000155249.h #19	ENSGT00940000154953.a #20	ENSGT00440000037338	ENSGT00940000177743	ENSGT00990000203833	ENSGT00940000170279	ENSGT00940000175899	ENSGT00950000183174.B.a.f #22	ENSGT00390000002932	ENSGT00390000005922.b	ENSGT00940000159225	ENSGT00940000165282.a	ENSGT00390000010980	ENSGT00940000159403	ENSGT00570000079101.a.b	ENSGT00940000162861	ENSGT00940000164256	ENSGT00940000153909.b	ENSGT00940000178312	ENSGT00510000047951	ENSGT00390000006550	ENSGT00940000160541	ENSGT00510000046732.B
Percomorphaceae_D	ANCESTRAL SPECIES	25					ENSGT00940000158277.a #11	ENSGT00980000198976	ENSGT00940000156295.h #15	ENSGT00940000166427	ENSGT00940000155249.h #19	ENSGT00940000154953.a #20	ENSGT00440000037338	ENSGT00940000177743	ENSGT00990000203833	ENSGT00940000170279	ENSGT00940000175899	ENSGT00950000183174.B.a.f #22	ENSGT00390000002932	ENSGT00390000005922.b	ENSGT00940000159225	ENSGT00940000165282.a	ENSGT00390000010980	ENSGT00940000159403	ENSGT00570000079101.a.b	ENSGT00940000162861	ENSGT00940000164256	ENSGT00940000153909.b	ENSGT00940000178312	ENSGT00510000047951	ENSGT00390000006550	ENSGT00940000160541	ENSGT00510000046732.B
Carangaria	ANCESTRAL SPECIES	15	ENSGT00390000015511	ENSGT00940000153232.a.b.b	ENSGT00940000159063	ENSGT00940000160971	ENSGT00940000161248	ENSGT00920000149123.d	ENSGT00940000158277.a #11	ENSGT00980000198976	ENSGT00940000156295.h #15	ENSGT00940000166427	ENSGT00940000155249.h #19	ENSGT00940000154953.a #20	ENSGT00440000037338	ENSGT00940000170279	ENSGT00940000175899	ENSGT00950000183174.B.a.f #22	ENSGT00390000002932	ENSGT00390000005922.b	ENSGT00940000159225	ENSGT00940000165282.a	ENSGT00390000010980	ENSGT00940000159403	ENSGT00570000079101.a.b	ENSGT00940000162861	ENSGT00940000164256	ENSGT00940000153909.b	ENSGT00940000178312	ENSGT00510000047951	ENSGT00390000006550	ENSGT00940000160541	ENSGT00510000046732.B.f
Pleuronectoidei	ANCESTRAL SPECIES	68					ENSGT00920000149123.d	ENSGT00940000158277.a #11	ENSGT00980000198976	ENSGT00940000156295.h #15	ENSGT00940000166427	ENSGT00940000155249.h #19	ENSGT00940000154953.a #20	ENSGT00940000177743	ENSGT00990000203833	ENSGT00940000170279	ENSGT00940000175899	ENSGT00950000183174.B.a.f #22	ENSGT00390000002932	ENSGT00390000005922.b	ENSGT00940000159225	ENSGT00940000165282.a	ENSGT00390000010980	ENSGT00940000159403	ENSGT00570000079101.a.b	ENSGT00940000162861	ENSGT00940000164256	ENSGT00940000153909.b	ENSGT00510000047951	ENSGT00390000006550	ENSGT00940000160541	ENSGT00510000046732.B.e.a	ENSGT00940000156526.b
Turbot	MODERN SPECIES	4	ENSSMAG00000005483	ENSSMAG00000015366	pcdh10b (ENSSMAG00000015331) #11	ENSSMAG00000025573	ENSSMAG00000023668	PCDH18 (ENSSMAG00000015194) #15	ENSSMAG00000015148	ENSSMAG00000015121	NOCT (ENSSMAG00000026688) #19	ENSSMAG00000027231 #20	ENSSMAG00000015081	ENSSMAG00000015071	ENSSMAG00000015060	ENSSMAG00000015023	ENSSMAG00000015007	naa15a (ENSSMAG00000014932) #22	mlsl (ENSSMAG00000014877)	hars (ENSSMAG00000014813)	ENSSMAG00000014775	gfra3 (ENSSMAG00000014770)	ENSSMAG00000014735	ENSSMAG00000014711	ENSSMAG00000014691	ENSSMAG00000023525	ENSSMAG00000015468	ENSSMAG00000015496	ENSSMAG00000015566	SPDL1 (ENSSMAG00000015592)	ENSSMAG00000015712	ENSSMAG00000015843	ENSSMAG00000037545
Carangaria_A	ANCESTRAL SPECIES	22	ENSGT00390000015511	ENSGT00940000153232.a.b.b	ENSGT00940000159063	ENSGT00940000160971	ENSGT00940000161248	ENSGT00920000149123.d	ENSGT00980000198976	ENSGT00940000158277.a #11	ENSGT00940000156295.h #15	ENSGT00940000166427	ENSGT00940000155249.h #19	ENSGT00940000154953.a #20	ENSGT00440000037338	ENSGT00940000170279	ENSGT00940000175899	ENSGT00950000183174.B.a.f #22	ENSGT00390000002932	ENSGT00390000005922.b	ENSGT00940000159225	ENSGT00940000165282.a	ENSGT00390000010980	ENSGT00940000159403	ENSGT00570000079101.a.b	ENSGT00940000162861	ENSGT00940000164256	ENSGT00940000153909.b	ENSGT00940000178312	ENSGT00510000047951	ENSGT00390000006550	ENSGT00940000160541	ENSGT00510000046732.B.f
Seriola	ANCESTRAL SPECIES	101	ENSGT01030000234957	ENSGT00940000153700	ENSGT00390000013163	ENSGT00390000002414	ENSGT00390000012030.b.a	ENSGT00390000014635	ENSGT00390000006413	ENSGT00940000161151	ENSGT00390000013284	ENSGT00390000009871	ENSGT00390000008738	ENSGT00940000155249.h #19	ENSGT00940000154953.a #20	ENSGT00940000170279	ENSGT00940000175899	ENSGT00950000183174.B.a.f #22	ENSGT00390000002932	ENSGT00390000005922.b	ENSGT00940000159225	ENSGT00940000165282.a	ENSGT00390000010980	ENSGT00940000159403	ENSGT00570000079101.a.b	ENSGT00940000162861	ENSGT00940000164256	ENSGT00940000153909.b	ENSGT00940000178312	ENSGT00510000047951	ENSGT00390000006550	ENSGT00940000160541	ENSGT00510000046732.B.f
Greater amberjack	MODERN SPECIES	91	csnk1a1 (ENSSDUG00000000525)	FBXO38 (ENSSDUG00000000616)	igbp1 (ENSSDUG00000000628)	magt1 (ENSSDUG00000000634)	abhd18 (ENSSDUG00000000672)	rnf103 (ENSSDUG00000000751)	ENSSDUG00000000790	tmem129 (ENSSDUG00000000800)	ENSSDUG00000000841	ENSSDUG00000000855	ENSSDUG00000000858	NOCT (ENSSDUG00000000870) #19	elf2a (ENSSDUG00000000884) #20	ENSSDUG00000000900	ENSSDUG00000000916	naa15a (ENSSDUG00000000929) #22	mlsl (ENSSDUG00000001034)	hars (ENSSDUG00000001088)	dnd1 (ENSSDUG00000001174)	ENSSDUG00000001196	gfra3 (ENSSDUG00000001216)	zgc:153146 (ENSSDUG00000001249)	hvcn1 (ENSSDUG00000001325)	ENSSDUG00000001334	nkx1.2lb (ENSSDUG00000001348)	uvssa (ENSSDUG00000001375)	ENSSDUG00000001408	spdl1 (ENSSDUG00000001463)	trappc11 (ENSSDUG00000001508)	rell2 (ENSSDUG00000001628)	ENSSDUG00000001647
Yellowtail amberjack	MODERN SPECIES	2970	ENSSLDG00000007086	csnk1a1 (ENSSLDG00000007114)	FBXO38 (ENSSLDG00000007253)	igbp1 (ENSSLDG00000007301)	magt1 (ENSSLDG00000007327)	abhd18 (ENSSLDG00000007391)	rnf103 (ENSSLDG00000007423)	ENSSLDG00000007452	tmem129 (ENSSLDG00000007481)	ENSSLDG00000007530	ENSSLDG00000007554	NOCT (ENSSLDG00000007584) #19	elf2a (ENSSLDG00000007600) #20	ENSSLDG00000007624	ENSSLDG00000007649	naa15a (ENSSLDG00000007695) #22	mlsl (ENSSLDG00000007766)	hars (ENSSLDG00000007832)	dnd1 (ENSSLDG00000007909)	gfra3 (ENSSLDG00000008045)	zgc:153146 (ENSSLDG00000008079)	hvcn1 (ENSSLDG00000008191)	ENSSLDG00000008216	nkx1.2lb (ENSSLDG00000008242)	uvssa (ENSSLDG00000008254)	ENSSLDG00000008287	ENSSLDG00000008304	spdl1 (ENSSLDG00000008318)	trappc11 (ENSSLDG00000008343)	ENSSLDG00000008400	ENSSLDG00000008412
Barramundi perch	MODERN SPECIES	133								ENSLCAG00010013303	pcdh18b (ENSLCAG00010013309) #15	ENSLCAG00010013314	ENSLCAG00010013334	NOCT (ENSLCAG00010013381) #19	elf2a (ENSLCAG00010013385) #20	ENSLCAG00010013391	ENSLCAG00010013402	naa15a (ENSLCAG00010013694) #22	mlsl (ENSLCAG00010014561)	hars (ENSLCAG00010014666)	dnd1 (ENSLCAG00010015188)	ENSLCAG00010015189	gfra3 (ENSLCAG00010015191)	zgc:153146 (ENSLCAG00010015196)	ENSLCAG00010015199	hvcn1 (ENSLCAG00010015206)	nkx1.2lb (ENSLCAG00010015216)	uvssa (ENSLCAG00010015221)	ENSLCAG00010015229	spdl1 (ENSLCAG00010015230)	trappc11 (ENSLCAG00010015254)	ENSLCAG00010015296	SLITRK2 (ENSLCAG00010015300)
Anabantaria	ANCESTRAL SPECIES	37						ENSGT00520000055589.d.b	ENSGT00520000055589.d.a.a	ENSGT00940000158457	ENSGT00940000158277.a #11	ENSGT00940000156295.h #15	ENSGT00940000166427	ENSGT00940000155249.h #19	ENSGT00940000154953.a #20	ENSGT00990000203833	ENSGT00940000175899	ENSGT00950000183174.B.a.f #22	ENSGT00390000002932	ENSGT00390000005922.b	ENSGT00940000159225	ENSGT00940000165282.a	ENSGT00390000010980	ENSGT00940000159403	ENSGT00570000079101.a.b	ENSGT00940000162861	ENSGT00940000164256	ENSGT00940000153909.b	ENSGT00510000047951	ENSGT00390000006550	ENSGT00940000160541	ENSGT00510000046732.B	ENSGT00940000159799
Anabantoidei	ANCESTRAL SPECIES	11				ENSGT00940000158457	ENSGT00520000055589.d.a.a	ENSGT00940000153700	ENSGT00390000013163	ENSGT00390000012030.b.a	ENSGT00940000158277.a #11	ENSGT00940000156295.h #15	ENSGT00940000166427	ENSGT00940000155249.h #19	ENSGT00940000154953.a #20	ENSGT00990000203833	ENSGT00940000175899	ENSGT00950000183174.B.a.f #22	ENSGT00390000002932	ENSGT00390000005922.b	ENSGT00940000159225	ENSGT00940000165282.a	ENSGT00390000010980	ENSGT00940000159403	ENSGT00570000079101.a.b	ENSGT00940000162861	ENSGT00940000164256	ENSGT00940000153909.b	ENSGT00510000047951	ENSGT00390000006550	ENSGT00940000160541	ENSGT00510000046732.B	ENSGT00940000159799
Climbing perch	MODERN SPECIES	1	ENSATEG00000029654	ENSATEG00000000201	ENSATEG00000027132	ENSATEG00000000255	ENSATEG00000015424	ENSATEG00000000271 #11	ENSATEG00000015393	pcdh10b (ENSATEG00000015437) #11	PCDH18 (ENSATEG00000015463) #15	ENSATEG00000002739	ENSATEG00000015518	NOCT (ENSATEG00000015612) #19	ENSATEG00000025513	ENSATEG00000015617	ENSATEG00000030067	NAA15 (ENSATEG00000015667) #22	mlsl (ENSATEG00000015725)	hars (ENSATEG00000015770)	ENSATEG00000015824	gfra3 (ENSATEG00000015833)	ENSATEG00000015846	ENSATEG00000015867	ENSATEG00000015872	ENSATEG00000015901	ENSATEG00000015919	ENSATEG00000015954	ENSATEG00000015963	ENSATEG00000015983	ENSATEG00000016017	ENSATEG00000016099	ENSATEG00000016148
Siamese fighting fish	MODERN SPECIES	1	SLITRK2 (ENSBSLG00000008257)	ENSBSLG00000008263	enpp6 (ENSBSLG00000008280)	STOX2 (ENSBSLG00000008507)	csnk1a1 (ENSBSLG00000008533)	FBXO38 (ENSBSLG00000008997)	magt1 (ENSBSLG00000009165)	pcdh10b (ENSBSLG00000009310) #11	pcdh18b (ENSBSLG00000009333) #15	ENSBSLG00000009361	ENSBSLG00000009623	NOCT (ENSBSLG00000009644) #19	elf2a (ENSBSLG00000009649) #20	ENSBSLG00000009685	ENSBSLG00000009728	naa15a (ENSBSLG00000009789) #22	mlsl (ENSBSLG00000010002)	hars (ENSBSLG00000010095)	ENSBSLG00000010300	gfra3 (ENSBSLG00000010612)	ENSBSLG00000010680	ENSBSLG00000010699	ENSBSLG00000010714	il1rapl2 (ENSBSLG00000010846)	ENSBSLG00000011007	zgc:194679 (ENSBSLG00000011014)	ENSBSLG00000011034	ENSBSLG00000011166	hdac3 (ENSBSLG00000011189)	ENSBSLG00000011238	ENSBSLG00000011248
Zig-zag eel	MODERN SPECIES	1	ENSMAMG00000002847 #15	pcdh10b (ENSMAMG00000002725) #11	ENSMAMG00000002716	ENSMAMG00000025421	ENSMAMG00000027418	ENSMAMG00000028617	ENSMAMG00000002657	ENSMAMG00000002609	ENSMAMG00000002528	ENSMAMG00000002510	ENSMAMG00000002501 #19	elf2a (ENSMAMG00000002486) #20	ENSMAMG00000002474	ENSMAMG00000002448	ENSMAMG00000002435	naa15a (ENSMAMG00000002371) #22	mlsl (ENSMAMG00000002318)	hars (ENSMAMG00000002252)	ENSMAMG00000001857	gfra3 (ENSMAMG00000001806)	ENSMAMG00000001792	ENSMAMG00000026327	ENSMAMG00000001744	ENSMAMG00000001720	ENSMAMG00000001701	ENSMAMG00000001684	ENSMAMG00000026529	ENSMAMG00000001508	ENSMAMG00000001484	ENSMAMG00000001417	ENSMAMG00000001183
Eupercaria	ANCESTRAL SPECIES	12	ENSGT00940000158825.d	ENSGT00390000002313	ENSGT00390000008738	ENSGT00390000009871	ENSGT00980000198976	ENSGT00940000158277.a #11	ENSGT00940000156295.h #15	ENSGT00940000166427	ENSGT00940000155249.h #19	ENSGT00940000154953.a #20	ENSGT00440000037338	ENSGT00940000177743	ENSGT00990000203833	ENSGT00940000170279	ENSGT00940000175899	ENSGT00950000183174.B.a.f #22	ENSGT00390000002932	ENSGT00390000005922.b	ENSGT00940000159225	ENSGT00940000165282.a	ENSGT00390000010980	ENSGT00940000159403	ENSGT00570000079101.a.b	ENSGT00940000162861	ENSGT00940000164256	ENSGT00940000153909.b	ENSGT00510000047951	ENSGT00390000006550	ENSGT00940000160541	ENSGT00510000046732.B	ENSGT00940000159799
Tetraodontidae	ANCESTRAL SPECIES	151								ENSGT00940000158277.a #11	ENSGT00940000156295.h #15	ENSGT00940000166427	ENSGT00940000155249.h #19	ENSGT00940000177743	ENSGT00990000203833	ENSGT00440000037338	ENSGT00940000175899	ENSGT00950000183174.B.a.f #22	ENSGT00390000002932
Fugu	MODERN SPECIES	5	ids (ENSTRUG00000000459)	dcps (ENSTRUG00000024323)	magt1 (ENSTRUG00000024515)	FBXO38 (ENSTRUG00000000344)	csnk1a1 (ENSTRUG00000025499)	ENSTRUG00000024142	pcdh10b (ENSTRUG00000000287) #11	ENSTRUG00000028977	pcdh18b (ENSTRUG00000005635) #15	ENSTRUG00000005035	NOCT (ENSTRUG00000004981) #19	ENSTRUG00000027570	ENSTRUG00000032965	ENSTRUG00000022561	ENSTRUG00000022218	naa15a (ENSTRUG00000003946) #22	mlsl (ENSTRUG00000003359)	ENSTRUG00000003143	hvcn1 (ENSTRUG00000002961)	gfra3 (ENSTRUG00000002545)	spdl1 (ENSTRUG00000009720)	ENSTRUG00000009620	uvssa (ENSTRUG00000009400)	nkx1.2lb (ENSTRUG00000009389)	hars (ENSTRUG00000009144)	ENSTRUG00000009108	trappc11 (ENSTRUG00000008668)	setd7 (ENSTRUG00000008535) #27	ENSTRUG00000008281	ENSTRUG00000029520	ENSTRUG00000019580
Tetraodon	MODERN SPECIES	26	ENSTNIG00000004052	ENSTNIG00000004050	stxbp2 (ENSTNIG00000004049)	nelfb (ENSTNIG00000004048)	arrdc1a (ENSTNIG00000000760)	ENSTNIG00000004045	ENSTNIG00000002283	ENSTNIG00000004044	ENSTNIG00000004041	BRPF3 (ENSTNIG00000004040)	ENSTNIG00000004039	ENSTNIG00000004038	ENSTNIG00000004037	htr1ab (ENSTNIG00000004036)	ENSTNIG00000004035	ENSTNIG00000004034 #22	snx21 (ENSTNIG00000004031)	ENSTNIG00000000990	CCNJ (ENSTNIG00000004023)	BTAF1 (ENSTNIG00000004022)	ENSTNIG00000004021	ENSTNIG00000004020	ENSTNIG00000004019	exosc6 (ENSTNIG00000004018)	ENSTNIG00000004017	aars1 (ENSTNIG00000004016)	st3gal2 (ENSTNIG00000004015)	ENSTNIG00000004014	ENSTNIG00000004009	marchf5 (ENSTNIG00000004006)	lamtor2 (ENSTNIG00000004005)
Eupecaria_A	ANCESTRAL SPECIES	13	ENSGT00390000013284	ENSGT00940000158825.d	ENSGT00390000002313	ENSGT00390000008738	ENSGT00390000009871	ENSGT00980000198976	ENSGT00940000158277.a #11	ENSGT00940000156295.h #15	ENSGT00940000166427	ENSGT00940000155249.h #19	ENSGT00940000154953.a #20	ENSGT00440000037338	ENSGT00990000203833	ENSGT00940000170279	ENSGT00940000175899	ENSGT00950000183174.B.a.f #22	ENSGT00390000002932	ENSGT00390000005922.b	ENSGT00940000159225	ENSGT00940000165282.a	ENSGT00390000010980	ENSGT00940000159403	ENSGT00570000079101.a.b	ENSGT00940000162861	ENSGT00940000164256	ENSGT00940000153909.b	ENSGT00510000047951	ENSGT00390000006550	ENSGT00940000160541	ENSGT00510000046732.B	ENSGT00940000159799
Ballan wrasse	MODERN SPECIES	289									ENSLBEG00000024166	dnd1 (ENSLBEG00000024151)	hars (ENSLBEG00000024072)	NOCT (ENSLBEG00000024022) #19	ENSLBEG00000023973 #20	ENSLBEG00000023933	ENSLBEG00000023914	naa15a (ENSLBEG00000023847) #22	ENSLBEG00000023826	rnf103 (ENSLBEG00000023798)	abhd18 (ENSLBEG00000023739)	igbp1 (ENSLBEG00000023700)	mlsl (ENSLBEG00000023648)	magt1 (ENSLBEG00000023593)	FBXO38 (ENSLBEG00000023533)	csnk1a1 (ENSLBEG00000023431)	ENSLBEG00000023406	ENSLBEG00000023395	tmem129 (ENSLBEG00000023373)	ENSLBEG00000023350	ENSLBEG00000023306	ENSLBEG00000023270	ENSLBEG00000023237
Eupecaria_B	ANCESTRAL SPECIES	13	ENSGT00390000013284	ENSGT00940000158825.d	ENSGT00390000002313	ENSGT00390000008738	ENSGT00390000009871	ENSGT00980000198976	ENSGT00940000158277.a #11	ENSGT00940000156295.h #15	ENSGT00940000166427	ENSGT00940000155249.h #19	ENSGT00940000154953.a #20	ENSGT00990000203833	ENSGT00940000170279	ENSGT00440000037338	ENSGT00940000175899	ENSGT00950000183174.B.a.f #22	ENSGT00390000002932	ENSGT00390000005922.b	ENSGT00940000159225	ENSGT00940000165282.a	ENSGT00390000010980	ENSGT00940000159403	ENSGT00570000079101.a.b	ENSGT00940000162861	ENSGT00940000164256	ENSGT00940000153909.b	ENSGT00510000047951	ENSGT00390000006550	ENSGT00940000160541	ENSGT00510000046732.B	ENSGT00940000159799
Perciformes	ANCESTRAL SPECIES	50							ENSGT00980000198976	ENSGT00940000158277.a #11	ENSGT00940000156295.h #15	ENSGT00940000166427	ENSGT00940000155249.h #19	ENSGT00940000154953.a #20	ENSGT00440000037338	ENSGT00990000203833	ENSGT00940000175899	ENSGT00950000183174.B.a.f #22	ENSGT00390000002313	ENSGT00390000008738	ENSGT00390000009871	ENSGT00940000158457	ENSGT00520000055589.d.a.a	ENSGT01030000234957	ENSGT00940000153700	ENSGT00390000013163	ENSGT00390000012030.b.a	ENSGT00390000002414	ENSGT00390000014635	ENSGT00390000006413	ENSGT00940000161151	ENSGT00390000013284
Cottioidei	ANCESTRAL SPECIES	9	ENSGT00520000055589.d.a.a	ENSGT00940000158457	ENSGT00390000009871	ENSGT00390000008738	ENSGT00390000002313	ENSGT00390000005922.b	ENSGT00390000002932	ENSGT00940000158825.d	ENSGT00940000166427	ENSGT00940000156295.h #15	ENSGT00940000158277.a #11	ENSGT00980000198976	ENSGT00940000155249.h #19	ENSGT00940000154953.a #20	ENSGT00440000037338	ENSGT00950000183174.B.a.f #22	ENSGT00940000165282.a	ENSGT00940000159225	ENSGT00940000159795	ENSGT00950000183196.D.b	ENSGT00940000163421.a.d.b	ENSGT01090000260076.b.a	ENSGT00940000177201	ENSGT00950000182856.a.a.b	ENSGT00940000163551.i.a	ENSGT00940000155374.g.b	ENSGT00950000183097.a.a.a.f.a.b	ENSGT00390000016876	ENSGT00920000149138	ENSGT00940000157929	ENSGT00940000154508.a.a.s.b
Lumpfish	MODERN SPECIES	1	mlsl (ENSCLMG00005004864)	hars (ENSCLMG00005004880)	immt (ENSCLMG00005004903)	slbp (ENSCLMG00005004912)	ENSCLMG00005004917	ENSCLMG00005004918	ENSCLMG00005004929	pcdh18b (ENSCLMG00005006043) #15	ENSCLMG00005006088	pcdh10b (ENSCLMG00005006089) #11	ENSCLMG00005006091	NOCT (ENSCLMG00005006092) #19	ENSCLMG00005006093	ENSCLMG00005006094	ENSCLMG00005006095	NAA15 (ENSCLMG00005006096) #22	ENSCLMG00005006161	dnd1 (ENSCLMG00005006163)	ENSCLMG00005006407	ENSCLMG00005006409	ENSCLMG00005006410	ENSCLMG00005006411	ENSCLMG00005006412	il1rapl2 (ENSCLMG00005006417)	ENSCLMG00005006918	snx25 (ENSCLMG00005006943)	ENSCLMG00005008455	CNGA2 (ENSCLMG00005008456)	ENSCLMG00005008520	ptcd3 (ENSCLMG00005008965)	POLR1A (ENSCLMG00005008969)
Stickleback	MODERN SPECIES	3	hars (ENSGACG00000019602)	mlsl (ENSGACG00000019604)	FGF4 (ENSGACG00000019608)	ENSGACG00000019609	ENSGACG00000019610	pcdh18b (ENSGACG00000019611) #15	ENSGACG00000019612	ENSGACG00000019614	ENSGACG00000019615	pcdh10b (ENSGACG00000019617) #11	NOCT (ENSGACG00000019619) #19	elf2a (ENSGACG00000019621) #20	ENSGACG00000019622	mgarpa (ENSGACG00000019623)	ENSGACG00000019624	naa15a (ENSGACG00000019625) #22	dnd1 (ENSGACG00000019630)	ENSGACG00000019633	ENSGACG00000019640	zgc:194679 (ENSGACG00000019643)	il1rapl2 (ENSGACG00000019644)	ENSGACG00000019647	ENSGACG00000019648	snx25 (ENSGACG00000019651)	ENSGACG00000019652	ENSGACG00000019653	ENSGACG00000019654	ENSGACG00000019657	TMEM60 (ENSGACG00000019659)	PHTF2 (ENSGACG00000019660)	adipor2 (ENSGACG00000019662)
Perciformes_a	ANCESTRAL SPECIES	45	ENSGT00940000159403	ENSGT00390000010980	ENSGT00940000165282.a	ENSGT00940000159225	ENSGT00390000005922.b	ENSGT00390000002932	ENSGT00940000158825.d	ENSGT00980000198976	ENSGT00940000158277.a #11	ENSGT00940000156295.h #15	ENSGT00940000166427	ENSGT00940000155249.h #19	ENSGT00940000154953.a #20	ENSGT00990000203833	ENSGT00940000175899	ENSGT00950000183174.B.a.f #22	ENSGT00390000002313	ENSGT00390000008738	ENSGT00390000009871	ENSGT00940000158457	ENSGT00520000055589.d.a.a	ENSGT01030000234957	ENSGT00940000153700	ENSGT00390000013163	ENSGT00390000012030.b.a	ENSGT00390000002414	ENSGT00390000014635	ENSGT00390000006413	ENSGT00940000161151	ENSGT00390000013284
Channel bull blenny	MODERN SPECIES	1	hvcn1 (ENSCGOG00000008757)	zgc:153146 (ENSCGOG00000008753)	gfra3 (ENSCGOG00000008675)	dnd1 (ENSCGOG00000008667)	hars (ENSCGOG00000007011)	mlsl (ENSCGOG00000006968)	FGF4 (ENSCGOG00000006967)	ENSCGOG00000006965	pcdh10b (ENSCGOG00000006963) #11	pcdh18b (ENSCGOG00000006959) #15	ENSCGOG00000006361	NOCT (ENSCGOG00000006347) #19	ENSCGOG00000006346	ENSCGOG00000006345	ENSCGOG00000006340	naa15a (ENSCGOG00000004659) #22	immt (ENSCGOG00000004615)	slbp (ENSCGOG00000004588)	ENSCGOG00000004583	enpp6 (ENSCGOG00000004546)	ENSCGOG00000004540	STOX2 (ENSCGOG00000004537)	ENSCGOG00000004534	csnk1a1 (ENSCGOG00000003474)	FBXO38 (ENSCGOG00000003205)	magt1 (ENSCGOG00000002297)	igbp1 (ENSCGOG00000002286)	abhd18 (ENSCGOG00000002258)	rnf103 (ENSCGOG00000002250)	ENSCGOG00000002249	tmem129 (ENSCGOG00000002248)
Pike perch	MODERN SPECIES	77					ENSSLUG00000016165	ENSSLUG00000016159	ENSSLUG00000016156	zdhhc3a (ENSSLUG00000016150)	pcdh18b (ENSSLUG00000016141) #15	ENSSLUG00000015368	NOCT (ENSSLUG00000015295) #19	ENSSLUG00000015270 #20	ENSSLUG00000015263	ENSSLUG00000015253	ENSSLUG00000015247	naa15a (ENSSLUG00000013615) #22	immt (ENSSLUG00000013556)	ENSSLUG00000013545	ENSSLUG00000013519	GTPBP6 (ENSSLUG00000013491)	mibp (ENSSLUG00000013480)	ENSSLUG00000013464	enpp6 (ENSSLUG00000013421)	STOX2 (ENSSLUG00000013412)	ENSSLUG00000013408	csnk1a1 (ENSSLUG00000013372)	FBXO38 (ENSSLUG00000013315)	SLITRK2 (ENSSLUG00000013302)
Eupecaria_C	ANCESTRAL SPECIES	45	ENSGT00390000013284	ENSGT00940000158825.d	ENSGT00390000002313	ENSGT00390000008738	ENSGT00390000009871	ENSGT00940000158277.a #11	ENSGT00980000198976	ENSGT00940000156295.h #15	ENSGT00940000166427	ENSGT00940000155249.h #19	ENSGT00940000154953.a #20	ENSGT00940000177743	ENSGT00990000203833	ENSGT00440000037338	ENSGT00940000175899	ENSGT00950000183174.B.a.f #22	ENSGT00390000002932	ENSGT00390000005922.b	ENSGT00940000159225	ENSGT00940000165282.a	ENSGT00390000010980	ENSGT00940000159403	ENSGT00570000079101.a.b	ENSGT00940000162861	ENSGT00940000164256	ENSGT00940000153909.b	ENSGT00510000047951	ENSGT00390000006550	ENSGT00940000160541	ENSGT00510000046732.B	ENSGT00940000159799
Eupercaria_incertae_sedis	ANCESTRAL SPECIES	51	ENSGT00390000014635	ENSGT00390000006413	ENSGT00940000161151	ENSGT00390000013284	ENSGT00940000158825.d	ENSGT00390000002313	ENSGT00390000008738	ENSGT00390000009871	ENSGT00940000158277.a #11	ENSGT00940000156295.h #15	ENSGT00940000166427	ENSGT00940000155249.h #19	ENSGT00940000154953.a #20	ENSGT00440000037338	ENSGT00940000175899	ENSGT00950000183174.B.a.f #22	ENSGT00390000002932	ENSGT00390000005922.b	ENSGT00940000159225	ENSGT00940000165282.a	ENSGT00390000010980	ENSGT00940000159403	ENSGT00570000079101.a.b	ENSGT00940000162861	ENSGT00940000164256	ENSGT00940000153909.b	ENSGT00510000047951	ENSGT00390000006550	ENSGT00940000160541	ENSGT00510000046732.B	ENSGT00940000159799
European seabass	MODERN SPECIES	12	ENSDLAG00005005175	ENSDLAG00005029593	ENSDLAG00005005298	ENSDLAG00005033967	ENSDLAG00005028368	pcdh10b (ENSDLAG00005018962) #11	ENSDLAG00005007239	ENSDLAG00005007218	ENSDLAG00005032285	ENSDLAG00005007156	PCDH18 (ENSDLAG00005007051) #15	ENSDLAG00005006854	NOCT (ENSDLAG00005027566) #19	elf2a (ENSDLAG00005006823) #20	ENSDLAG00005034027	naa15a (ENSDLAG00005004697) #22	mlsl (ENSDLAG00005004603)	ENSDLAG00005004555	hars (ENSDLAG00005001950)	ENSDLAG00005034345	gfra3 (ENSDLAG00005001827)	ENSDLAG00005001812	ENSDLAG00005035145	ENSDLAG00005001798	ENSDLAG00005001784	ENSDLAG00005027187	ENSDLAG00005001779	ENSDLAG00005001751	ENSDLAG00005001381	ENSDLAG00005027944	ENSDLAG00005001308
Large yellow croaker	MODERN SPECIES	490	ENSLCRG00005004139	rftn2 (ENSLCRG00005004140)	PLCL1 (ENSLCRG00005004145)	satb2 (ENSLCRG00005004151)	dnajb11 (ENSLCRG00005004153)	tbccd1 (ENSLCRG00005004168)	crygs1 (ENSLCRG00005004171)	lcmt2 (ENSLCRG00005004178)	rab5b (ENSLCRG00005004186)	dbr1 (ENSLCRG00005004190)	armc8 (ENSLCRG00005004198)	ENSLCRG00005004736	idh1 (ENSLCRG00005004740)	ENSLCRG00005004835	ENSLCRG00005004840	naa15a (ENSLCRG00005004868) #22	mlsl (ENSLCRG00005005688)	hars (ENSLCRG00005005707)	ENSLCRG00005005761	ENSLCRG00005005762	gfra3 (ENSLCRG00005005763)	zgc:153146 (ENSLCRG00005005765)	hvcn1 (ENSLCRG00005005767)	ENSLCRG00005005769	ENSLCRG00005005774	nkx1.2lb (ENSLCRG00005005775)	uvssa (ENSLCRG00005005780)	lrrc40 (ENSLCRG00005005789)	ENSLCRG00005005795	ENSLCRG00005005796	ccdc80 (ENSLCRG00005005798)
Gilthead seabream	MODERN SPECIES	9	pcdh10b (ENSSAUG00010012165) #11	ENSSAUG00010012167	ENSSAUG00010012169	ENSSAUG00010012171	ENSSAUG00010012174	ENSSAUG00010012176	pcdh18b (ENSSAUG00010012177) #15	ENSSAUG00010012179	ENSSAUG00010012189	ENSSAUG00010012744	NOCT (ENSSAUG00010012749) #19	ENSSAUG00010012750	ENSSAUG00010012751	ENSSAUG00010012753	NDUFC1 (ENSSAUG00010012757)	naa15a (ENSSAUG00010008553) #22	mlsl (ENSSAUG00010010381)	hars (ENSSAUG00010010405)	ENSSAUG00010010435	gfra3 (ENSSAUG00010010568)	SLITRK2 (ENSSAUG00010010569)	ENSSAUG00010010571	gfra3 (ENSSAUG00010010574)	zgc:153146 (ENSSAUG00010010576)	ENSSAUG00010010577	ENSSAUG00010010578	ENSSAUG00010010580	mgst1.1 (ENSSAUG00010010581)	SLITRK2 (ENSSAUG00010010583)	ENSSAUG00010010584	ENSSAUG00010010587
Pinecone sodierfish	MODERN SPECIES	1	ENSMMDG00005001824	ENSMMDG00005001819	ENSMMDG00005001817	trappc11 (ENSMMDG00005001630)	ENSMMDG00005001552	STOX2 (ENSMMDG00005001543)	enpp6 (ENSMMDG00005001474)	pcdh10b (ENSMMDG00005001459) #11	ENSMMDG00005001449	pcdh18b (ENSMMDG00005001301) #15	ENSMMDG00005001142	NOCT (ENSMMDG00005001131) #19	elf2a (ENSMMDG00005001127) #20	ENSMMDG00005016362	ENSMMDG00005016359	naa15a (ENSMMDG00005015567) #22	mlsl (ENSMMDG00005015540)	rab33ba (ENSMMDG00005015538) #25	zgc:113425 (ENSMMDG00005015536)	setd7 (ENSMMDG00005015535) #27	mgst2 (ENSMMDG00005015511) #30	mgst2 (ENSMMDG00005015493) #30	mgst2 (ENSMMDG00005015490) #30	mgst2 (ENSMMDG00005015489) #30	mgst2 (ENSMMDG00005015476) #30	ENSMMDG00005015474	SCOC (ENSMMDG00005015469) #32	zgc:154054 (ENSMMDG00005015438)	hspa9 (ENSMMDG00005014634)	ENSMMDG00005014609	ENSMMDG00005014607
Cod	MODERN SPECIES	1	ENSGMOG00000023266	ENSGMOG00000029778	ENSGMOG00000014170	ENSGMOG00000024641	ENSGMOG00000034316	TRAPPC11 (ENSGMOG00000013293)	ENSGMOG00000030178	ENPP6 (ENSGMOG00000005656)	pcdh10b (ENSGMOG00000013076) #11	ENSGMOG00000030566	PCDH18 (ENSGMOG00000001212) #15	ENSGMOG00000001677	NOCT (ENSGMOG00000030553) #19	elf2a (ENSGMOG00000012271) #20	ENSGMOG00000031323	naa15a (ENSGMOG00000012278) #22	mlsl (ENSGMOG00000000690)	rab33ba (ENSGMOG00000000885) #25	ENSGMOG00000028531	ENSGMOG00000000732	ENSGMOG00000023219	ENSGMOG00000026328	ENSGMOG00000025405	hars (ENSGMOG00000016134)	ENSGMOG00000016112	gfra3 (ENSGMOG00000026310)	ENSGMOG00000033937	ENSGMOG00000019850	ENSGMOG00000008626	ENSGMOG00000008642	ENSGMOG00000008653
Protacanthopterygii	ANCESTRAL SPECIES	28	ENSGT00940000158062.f.b	ENSGT00940000156892.a	ENSGT00940000161629.b	ENSGT00940000154617.A.a.b	ENSGT00390000015138	ENSGT00390000000436	ENSGT00940000158277.a #11	ENSGT00980000198976	ENSGT00940000156295.h #15	ENSGT00940000166427	ENSGT00940000155249.h #19	ENSGT00940000154953.a #20	ENSGT00990000203833	ENSGT00390000002932	ENSGT00940000175899	ENSGT00950000183174.B.a.f #22	ENSGT00940000157090.g #25	ENSGT00390000008183	ENSGT00390000004827 #27	ENSGT00940000160288 #30	ENSGT00390000008828.fb.a #32	ENSGT00940000156526.b	ENSGT00510000050125.a.b	ENSGT00510000050125.a.a	ENSGT00940000159799	ENSGT00390000005922.b	ENSGT00940000159225	ENSGT00940000165282.a	ENSGT00940000157245	ENSGT00510000047493	ENSGT00510000049291
Northern pike	MODERN SPECIES	3	CHRNA6 (ENSELUG00000002417)	chrnb3b (ENSELUG00000002428)	KBTBD13 (ENSELUG00000002435)	ENSELUG00000002458	si:ch211-175m2.5 (ENSELUG00000002475)	smim19 (ENSELUG00000002483)	pcdh10b (ENSELUG00000002493) #11	pcdh18b (ENSELUG00000002504) #15	ENSELUG00000026827	ENSELUG00000032214	ENSELUG00000002527	NOCT (ENSELUG00000002538) #19	elf2a (ENSELUG00000002546) #20	ENSELUG00000002550	ENSELUG00000002562	naa15a (ENSELUG00000002566) #22	mlsl (ENSELUG00000000066)	rab33ba (ENSELUG00000002575) #25	zgc:113425 (ENSELUG00000002579)	setd7 (ENSELUG00000002585) #27	SCOC (ENSELUG00000029806) #32	ENSELUG00000033357	ENSELUG00000024858	hars (ENSELUG00000002631)	DND1 (ENSELUG00000002636)	gfra3 (ENSELUG00000002643)	rap2c (ENSELUG00000002651)	zgc:92907 (ENSELUG00000028728)	CXorf65 (ENSELUG00000002660)	ENSELUG00000002672	FOXO4 (ENSELUG00000002676)
Salmoninae	DUPLICATION
Salmoninae	DUPLICATION
Salmoninae	ANCESTRAL SPECIES	12												ENSGT00940000166427.g	ENSGT00940000155249.h.c #19	ENSGT00940000154953.a.c #20	ENSGT00990000203833	ENSGT00950000183174.B.a.f.c.a #22	ENSGT00940000157090.g.e #25	ENSGT00390000008183	ENSGT00390000004827 #27	ENSGT00940000160288 #30	ENSGT00390000008828.fb.a.c #32	ENSGT00940000156526.b.b	ENSGT00510000050125.a.a	ENSGT00940000159799.q	ENSGT00390000005922.b.k.a	ENSGT00940000159225	ENSGT00940000165282.a.d	ENSGT00940000157245.jb.a	ENSGT00510000047493.t	ENSGT00510000049291	ENSGT00950000183168.C.c
Salmoninae_a	ANCESTRAL SPECIES	18	ENSGT00940000174975	ENSGT00940000156228.o.b.a	ENSGT00940000158417.a.d	ENSGT00940000158062.f.b.a.a	ENSGT00940000156892.a.f	ENSGT00940000161629.b	ENSGT00940000154617.A.a.b.a	ENSGT00390000015138	ENSGT00390000000436.h	ENSGT00940000158277.a.h #11	ENSGT00940000156295.h.f #15	ENSGT00940000166427.g	ENSGT00940000155249.h.c #19	ENSGT00940000154953.a.c #20	ENSGT00990000203833	ENSGT00950000183174.B.a.f.c.a #22	ENSGT00940000157090.g.e #25	ENSGT00390000008183	ENSGT00390000004827 #27	ENSGT00940000160288 #30	ENSGT00390000008828.fb.a.c #32	ENSGT00940000156526.b.b	ENSGT00510000050125.a.a	ENSGT00940000159799.q	ENSGT00390000005922.b.k.a	ENSGT00940000159225	ENSGT00940000165282.a.d	ENSGT01100000263476.E.b.a.a.a.a.a.b.h.a.a.a.b	ENSGT00940000157245.jb.a	ENSGT00510000047493.t	ENSGT00510000049291
Oncorhynchus	ANCESTRAL SPECIES	4	ENSGT00940000174975	ENSGT00940000156228.o.b.a	ENSGT00940000158417.a.d	ENSGT00940000158062.f.b.a.a	ENSGT00940000156892.a.f	ENSGT00940000161629.b	ENSGT00940000154617.A.a.b.a	ENSGT00390000015138	ENSGT00390000000436.h	ENSGT00940000158277.a.h #11	ENSGT00940000156295.h.f #15	ENSGT00940000166427.g	ENSGT00940000155249.h.c #19	ENSGT00940000154953.a.c #20	ENSGT00990000203833	ENSGT00950000183174.B.a.f.c.a #22	ENSGT00940000157090.g.e #25	ENSGT00390000008183	ENSGT00390000004827 #27	ENSGT00940000160288 #30	ENSGT00390000008828.fb.a.c #32	ENSGT00940000156526.b.b	ENSGT00510000050125.a.a	ENSGT00940000159799.q	ENSGT00390000005922.b.k.a	ENSGT00940000159225	ENSGT00940000165282.a.d	ENSGT01100000263476.E.b.a.a.a.a.a.b.h.a.a.a.b	ENSGT00940000157245.jb.a	ENSGT00510000047493.t	ENSGT00510000049291
Oncorhynchus_a	ANCESTRAL SPECIES	2	ENSGT00940000156228.o.b.a	ENSGT00940000158062.f.b.b	ENSGT00940000158417.a.d	ENSGT00940000158062.f.b.a.a	ENSGT00940000156892.a.f	ENSGT00940000161629.b	ENSGT00940000154617.A.a.b.a	ENSGT00390000015138	ENSGT00390000000436.h	ENSGT00940000158277.a.h #11	ENSGT00940000156295.h.f #15	ENSGT00940000166427.g	ENSGT00940000155249.h.c #19	ENSGT00940000154953.a.c #20	ENSGT00990000203833	ENSGT00950000183174.B.a.f.c.a #22	ENSGT00940000157090.g.e #25	ENSGT00390000008183	ENSGT00390000004827 #27	ENSGT00940000160288 #30	ENSGT00390000008828.fb.a.c #32	ENSGT00940000156526.b.b	ENSGT00510000050125.a.a	ENSGT00940000159799.q	ENSGT00390000005922.b.k.a	ENSGT00940000159225	ENSGT00940000165282.a.d	ENSGT01100000263476.E.b.a.a.a.a.a.b.h.a.a.a.b	ENSGT00940000157245.jb.a	ENSGT00510000047493.t	ENSGT00510000049291
Coho salmon	MODERN SPECIES	10	CHRNA6 (ENSOKIG00005021848)	ENSOKIG00005021829	KBTBD13 (ENSOKIG00005021823)	ENSOKIG00005021762	si:ch211-175m2.5 (ENSOKIG00005021745)	smim19 (ENSOKIG00005021737)	ENSOKIG00005021732	ENSOKIG00005021730	pcdh10b (ENSOKIG00005021722) #11	pcdh18b (ENSOKIG00005021715) #15	ENSOKIG00005021471	NOCT (ENSOKIG00005021438) #19	ENSOKIG00005021434	elf2a (ENSOKIG00005021419) #20	ENSOKIG00005021410	naa15a (ENSOKIG00005019713) #22	rab33ba (ENSOKIG00005019645) #25	zgc:113425 (ENSOKIG00005019638)	setd7 (ENSOKIG00005019626) #27	mgst2 (ENSOKIG00005019615) #30	SCOC (ENSOKIG00005019542) #32	ENSOKIG00005019439	ENSOKIG00005019423	ENSOKIG00005019417	hars (ENSOKIG00005019358)	dnd1 (ENSOKIG00005019337)	gfra3 (ENSOKIG00005019310)	rap2c (ENSOKIG00005019286)	zgc:92907 (ENSOKIG00005019268)	CXorf65 (ENSOKIG00005019258)	ENSOKIG00005019244
Chinook salmon	MODERN SPECIES	13	ENSOTSG00005008886	ENSOTSG00005008882	ENSOTSG00005008881	CHRNA6 (ENSOTSG00005008880)	ENSOTSG00005008879	KBTBD13 (ENSOTSG00005008878)	ENSOTSG00005008874	si:ch211-175m2.5 (ENSOTSG00005008871)	smim19 (ENSOTSG00005008869)	pcdh10b (ENSOTSG00005008866) #11	pcdh18b (ENSOTSG00005008862) #15	ENSOTSG00005007943	NOCT (ENSOTSG00005007941) #19	elf2a (ENSOTSG00005007940) #20	ENSOTSG00005007939	naa15a (ENSOTSG00005007353) #22	rab33ba (ENSOTSG00005007345) #25	zgc:113425 (ENSOTSG00005007344)	setd7 (ENSOTSG00005007342) #27	mgst2 (ENSOTSG00005007341) #30	SCOC (ENSOTSG00005007328) #32	ENSOTSG00005007327	ENSOTSG00005007325	hars (ENSOTSG00005007095)	dnd1 (ENSOTSG00005007089)	ENSOTSG00005007087	ENSOTSG00005007085	gfra3 (ENSOTSG00005007083)	ENSOTSG00005007080	ENSOTSG00005007078	zgc:92907 (ENSOTSG00005007072)
Rainbow trout	MODERN SPECIES	5	ENSOMYG00000052109	ENSOMYG00000033327	ENSOMYG00000033300	ENSOMYG00000061129	ENSOMYG00000033270	ENSOMYG00000033261	ENSOMYG00000033252	ENSOMYG00000071355	pcdh10b (ENSOMYG00000033237) #11	PCDH18 (ENSOMYG00000033202) #15	ENSOMYG00000047463	ENSOMYG00000047875	NOCT (ENSOMYG00000062174) #19	elf2a (ENSOMYG00000032897) #20	ENSOMYG00000032888	naa15a (ENSOMYG00000032601) #22	rab33ba (ENSOMYG00000060707) #25	zgc:113425 (ENSOMYG00000032497)	setd7 (ENSOMYG00000032491) #27	ENSOMYG00000052455	mgst2 (ENSOMYG00000032488) #30	ENSOMYG00000058427 #32	ENSOMYG00000032447	ENSOMYG00000032436	ENSOMYG00000067646	hars (ENSOMYG00000032409)	dnd1 (ENSOMYG00000032397)	ENSOMYG00000074313	gfra3 (ENSOMYG00000032384)	ENSOMYG00000032362	ENSOMYG00000063319
Salmo	ANCESTRAL SPECIES	24	ENSGT00530000063841.a.b	ENSGT00940000174975	ENSGT00940000156228.o.b.a	ENSGT00940000158417.a.d	ENSGT00940000158062.f.b.a.a	ENSGT00940000156892.a.f	ENSGT00940000154617.A.a.b.a	ENSGT00940000161629.b	ENSGT00390000015138	ENSGT00390000000436.h	ENSGT00940000158277.a.h #11	ENSGT00940000156295.h.f #15	ENSGT00940000166427.g	ENSGT00940000155249.h.c #19	ENSGT00940000154953.a.c #20	ENSGT00950000183174.B.a.f.c.a #22	ENSGT00940000157090.g.e #25	ENSGT00390000008183	ENSGT00390000004827 #27	ENSGT00940000160288 #30	ENSGT00390000008828.fb.a.c #32	ENSGT00940000156526.b.b	ENSGT00510000050125.a.a	ENSGT00940000159799.q	ENSGT00390000005922.b.k.a	ENSGT00940000159225	ENSGT00940000165282.a.d	ENSGT01100000263476.E.b.a.a.a.a.a.b.h.a.a.a.b	ENSGT00940000157245.jb.a	ENSGT00510000047493.t	ENSGT00510000049291
River trout	MODERN SPECIES	22	ENSSTUG00000021980	ENSSTUG00000021990	ENSSTUG00000021998	ENSSTUG00000022035	CHRNA6 (ENSSTUG00000022055)	CHRNB3 (ENSSTUG00000022081)	ENSSTUG00000022153	KBTBD13 (ENSSTUG00000022280)	si:ch211-175m2.5 (ENSSTUG00000022285)	smim19 (ENSSTUG00000022287)	pcdh10b (ENSSTUG00000022302) #11	pcdh18b (ENSSTUG00000022322) #15	ENSSTUG00000022351	NOCT (ENSSTUG00000022536) #19	elf2a (ENSSTUG00000022539) #20	naa15a (ENSSTUG00000022684) #22	rab33ba (ENSSTUG00000026649) #25	zgc:113425 (ENSSTUG00000026654)	setd7 (ENSSTUG00000026665) #27	mgst2 (ENSSTUG00000026679) #30	SCOC (ENSSTUG00000026690) #32	ENSSTUG00000016338	ENSSTUG00000016349	ENSSTUG00000016363	hars (ENSSTUG00000016405)	dnd1 (ENSSTUG00000016450)	gfra3 (ENSSTUG00000016458)	ENSSTUG00000016469	ENSSTUG00000016480	rap2c (ENSSTUG00000016490)	zgc:92907 (ENSSTUG00000016504)
Atlantic salmon	MODERN SPECIES	24	ENSSSAG00000059037	tri65 (ENSSSAG00000059081)	ENSSSAG00000059119	ENSSSAG00000117172	ENSSSAG00000059711	ENSSSAG00000059759	ENSSSAG00000059808	ENSSSAG00000060032	ENSSSAG00000060103	ENSSSAG00000060137	pcdh10b (ENSSSAG00000076866) #11	PCDH18 (ENSSSAG00000003075) #15	ENSSSAG00000076901	NOCT (ENSSSAG00000064865) #19	elf2a (ENSSSAG00000064871) #20	naa15a (ENSSSAG00000064932) #22	rab33b (ENSSSAG00000065195) #25	setd7 (ENSSSAG00000037147) #27	mgst2 (ENSSSAG00000037693) #30	SCOC (ENSSSAG00000106232) #32	ENSSSAG00000104669	ENSSSAG00000039375	hars (ENSSSAG00000039435)	ENSSSAG00000040100	gfra3 (ENSSSAG00000040116)	ENSSSAG00000121147	ENSSSAG00000089058	rap2c (ENSSSAG00000105600)	zgc:92907 (ENSSSAG00000040260)	CXorf65 (ENSSSAG00000105934)	ENSSSAG00000077625
Huchen	MODERN SPECIES	69													ENSHHUG00000028459	NOCT (ENSHHUG00000028580) #19	ENSHHUG00000028583	naa15a (ENSHHUG00000028591) #22	ENSHHUG00000028979	rab33ba (ENSHHUG00000028982) #25	zgc:113425 (ENSHHUG00000028984)	setd7 (ENSHHUG00000028988) #27	mgst2 (ENSHHUG00000028998) #30	SCOC (ENSHHUG00000029007) #32	ENSHHUG00000029014	ENSHHUG00000029103	ENSHHUG00000029105	hars (ENSHHUG00000029119)	dnd1 (ENSHHUG00000029136)	ENSHHUG00000029145	gfra3 (ENSHHUG00000029148)	ENSHHUG00000029163	ENSHHUG00000029166
Salmoninae	ANCESTRAL SPECIES	40									ENSGT00980000198976	ENSGT00940000158277.a.g #11	ENSGT00940000156295.h.e #15	ENSGT00940000166427.h	ENSGT00940000155249.h.d #19	ENSGT00940000154953.a.d #20	ENSGT00940000175899	ENSGT00950000183174.B.a.f.c.b #22	ENSGT00390000002932	ENSGT00940000157090.g.f #25	ENSGT00390000008828.fb.a.d #32	ENSGT00940000156526.b.a	ENSGT00510000050125.a.b	ENSGT00940000159799.r	ENSGT00390000005922.b.k.b	ENSGT01030000238271	ENSGT00940000165282.a.c	ENSGT00940000157245.jb.b	ENSGT00510000047493.s	ENSGT00950000183168.C.d	ENSGT00940000159334.e	ENSGT00940000153609.a.q.b	ENSGT00940000154651.b.b
Salmoninae_a	ANCESTRAL SPECIES	40	ENSGT00530000063841.a.a	ENSGT00950000183041.B.h	ENSGT00940000156228.o.b.b	ENSGT00940000158417.a.c	ENSGT00940000158062.f.b.a.b	ENSGT00940000156892.a.e	ENSGT00940000154617.A.a.b.b	ENSGT00390000000436.g	ENSGT00940000158277.a.g #11	ENSGT00980000198976	ENSGT00940000156295.h.e #15	ENSGT00940000166427.h	ENSGT00940000155249.h.d #19	ENSGT00940000154953.a.d #20	ENSGT00940000175899	ENSGT00950000183174.B.a.f.c.b #22	ENSGT00390000002932	ENSGT00940000157090.g.f #25	ENSGT00390000008828.fb.a.d #32	ENSGT00940000156526.b.a	ENSGT00510000050125.a.b	ENSGT00940000159799.r	ENSGT00390000005922.b.k.b	ENSGT00940000165282.a.c	ENSGT00940000157245.jb.b	ENSGT00510000047493.s	ENSGT00950000183168.C.d	ENSGT00940000159334.e	ENSGT00940000153609.a.q.b	ENSGT00940000154651.b.b	ENSGT00390000004952.a.b.b
Salmo	ANCESTRAL SPECIES	43	ENSGT00530000063841.a.a	ENSGT00950000183041.B.h	ENSGT00940000156228.o.b.b	ENSGT00940000158417.a.c	ENSGT00940000158062.f.b.a.b	ENSGT00940000156892.a.e	ENSGT00940000154617.A.a.b.b	ENSGT00390000000436.g	ENSGT00940000158277.a.g #11	ENSGT00980000198976	ENSGT00940000156295.h.e #15	ENSGT00940000166427.h	ENSGT00940000155249.h.d #19	ENSGT00940000154953.a.d #20	ENSGT00940000175899	ENSGT00950000183174.B.a.f.c.b #22	ENSGT00390000002932	ENSGT00940000157090.g.f #25	ENSGT00390000008828.fb.a.d #32	ENSGT00940000156526.b.a	ENSGT00510000050125.a.b	ENSGT00940000159799.r	ENSGT00390000005922.b.k.b	ENSGT00940000165282.a.c	ENSGT00940000157245.jb.b	ENSGT00510000047493.s	ENSGT00950000183168.C.d	ENSGT00940000159334.e	ENSGT00940000153609.a.q.b	ENSGT00940000154651.b.b	ENSGT00390000004952.a.b.b
Atlantic salmon	MODERN SPECIES	28	ENSSSAG00000074502	ENSSSAG00000076739	ENSSSAG00000119326	ENSSSAG00000059314	ENSSSAG00000076763	ENSSSAG00000076778	ENSSSAG00000076800	ENSSSAG00000076849	pcdh10b (ENSSSAG00000060180) #11	ENSSSAG00000076856	ENSSSAG00000101533	ENSSSAG00000076876 #15	ENSSSAG00000113148	ENSSSAG00000060507	elf2a (ENSSSAG00000077439) #20	naa15a (ENSSSAG00000077455) #22	mlsl (ENSSSAG00000077509)	rab33ba (ENSSSAG00000092646) #25	ENSSSAG00000038213	ENSSSAG00000091338	ENSSSAG00000109541 #32	ENSSSAG00000073604	ENSSSAG00000077548	ENSSSAG00000077551	ENSSSAG00000077557	ENSSSAG00000108669	ENSSSAG00000098561	zgc:92907 (ENSSSAG00000077613)	ENSSSAG00000095000	ENSSSAG00000040362	FOXO4 (ENSSSAG00000088589)
River trout	MODERN SPECIES	4	ENSSTUG00000033124	ENSSTUG00000033158	ENSSTUG00000033176	ENSSTUG00000033200	chrnb3b (ENSSTUG00000033207)	ENSSTUG00000033263	smim19 (ENSSTUG00000033323)	ENSSTUG00000033332	pcdh10b (ENSSTUG00000033335) #11	ENSSTUG00000033351	pcdh18b (ENSSTUG00000033359) #15	ENSSTUG00000033371	NOCT (ENSSTUG00000033837) #19	elf2a (ENSSTUG00000033850) #20	ENSSTUG00000033899	naa15a (ENSSTUG00000033994) #22	mlsl (ENSSTUG00000036309)	rab33ba (ENSSTUG00000036352) #25	SCOC (ENSSTUG00000036376) #32	zgc:154054 (ENSSTUG00000036412)	ENSSTUG00000036444	ENSSTUG00000036449	hars (ENSSTUG00000036490)	gfra3 (ENSSTUG00000038418)	rap2c (ENSSTUG00000038429)	zgc:92907 (ENSSTUG00000038438)	ENSSTUG00000038456	FOXO4 (ENSSTUG00000038473)	SNX12 (ENSSTUG00000038483)	SLC7A3 (ENSSTUG00000038502)	ubl3b (ENSSTUG00000038516)
Oncorhynchus	ANCESTRAL SPECIES	39	ENSGT00530000063841.a.a	ENSGT00950000183041.B.h	ENSGT00940000156228.o.b.b	ENSGT00940000158417.a.c	ENSGT00940000158062.f.b.a.b	ENSGT00940000156892.a.e	ENSGT00940000154617.A.a.b.b	ENSGT00390000000436.g	ENSGT00980000198976	ENSGT00940000158277.a.g #11	ENSGT00940000156295.h.e #15	ENSGT00940000166427.h	ENSGT00940000155249.h.d #19	ENSGT00940000154953.a.d #20	ENSGT00940000175899	ENSGT00950000183174.B.a.f.c.b #22	ENSGT00390000002932	ENSGT00940000157090.g.f #25	ENSGT00390000008828.fb.a.d #32	ENSGT00940000156526.b.a	ENSGT00510000050125.a.b	ENSGT00940000159799.r	ENSGT00390000005922.b.k.b	ENSGT00940000165282.a.c	ENSGT00940000157245.jb.b	ENSGT00510000047493.s	ENSGT00950000183168.C.d	ENSGT00940000159334.e	ENSGT00940000153609.a.q.b	ENSGT00940000154651.b.b	ENSGT00390000004952.a.b.b
Rainbow trout	MODERN SPECIES	23	ENSOMYG00000074606	ENSOMYG00000076036	ENSOMYG00000020517	ENSOMYG00000020479	ENSOMYG00000047525	ENSOMYG00000047522	ENSOMYG00000075518	ENSOMYG00000047521	pcdh10b (ENSOMYG00000047517) #11	ENSOMYG00000070638	ENSOMYG00000076855	ENSOMYG00000047509 #15	ENSOMYG00000033017	elf2a (ENSOMYG00000047370) #20	ENSOMYG00000047363	ENSOMYG00000047142 #22	rab33ba (ENSOMYG00000047359) #25	ENSOMYG00000053590 #32	ENSOMYG00000047316	ENSOMYG00000047261	ENSOMYG00000047256	ENSOMYG00000070405	ENSOMYG00000047055	ENSOMYG00000067307	rap2c (ENSOMYG00000051416)	zgc:92907 (ENSOMYG00000047044)	ENSOMYG00000047036	FOXO4 (ENSOMYG00000047031)	ENSOMYG00000047027	SLC7A3 (ENSOMYG00000047021)	ubl3b (ENSOMYG00000057816)
Oncorhynchus_a	ANCESTRAL SPECIES	40	ENSGT00530000063841.a.a	ENSGT00950000183041.B.h	ENSGT00940000156228.o.b.b	ENSGT00940000158417.a.c	ENSGT00940000158062.f.b.a.b	ENSGT00940000156892.a.e	ENSGT00940000154617.A.a.b.b	ENSGT00390000000436.g	ENSGT00980000198976	ENSGT00940000158277.a.g #11	ENSGT00940000156295.h.e #15	ENSGT00940000166427.h	ENSGT00940000155249.h.d #19	ENSGT00940000154953.a.d #20	ENSGT00940000175899	ENSGT00950000183174.B.a.f.c.b #22	ENSGT00390000002932	ENSGT00940000157090.g.f #25	ENSGT00390000008828.fb.a.d #32	ENSGT00940000156526.b.a	ENSGT00510000050125.a.b	ENSGT00940000159799.r	ENSGT00390000005922.b.k.b	ENSGT00940000165282.a.c	ENSGT00940000157245.jb.b	ENSGT00510000047493.s	ENSGT00950000183168.C.d	ENSGT00940000159334.e	ENSGT00940000153609.a.q.b	ENSGT00940000154651.b.b	ENSGT00390000004952.a.b.b
Chinook salmon	MODERN SPECIES	32	ENSOTSG00005021515	ENSOTSG00005021514	chrnb3b (ENSOTSG00005021513)	ENSOTSG00005021512	smim19 (ENSOTSG00005021510)	ENSOTSG00005021509	pcdh10b (ENSOTSG00005021508) #11	ENSOTSG00005021507	pcdh18b (ENSOTSG00005021506) #15	ENSOTSG00005017637	ENSOTSG00005017623	ENSOTSG00005017621	NOCT (ENSOTSG00005017620) #19	elf2a (ENSOTSG00005017618) #20	ENSOTSG00005017615	naa15a (ENSOTSG00005017479) #22	mlsl (ENSOTSG00005017429)	rab33ba (ENSOTSG00005017424) #25	SCOC (ENSOTSG00005017423) #32	zgc:154054 (ENSOTSG00005017421)	ENSOTSG00005017420	ENSOTSG00005017419	hars (ENSOTSG00005017125)	gfra3 (ENSOTSG00005017124)	rap2c (ENSOTSG00005017123)	zgc:92907 (ENSOTSG00005017121)	ENSOTSG00005017119	FOXO4 (ENSOTSG00005017118)	SNX12 (ENSOTSG00005017108)	SLC7A3 (ENSOTSG00005017096)	ubl3b (ENSOTSG00005017092)
Coho salmon	MODERN SPECIES	6	ANKRD13D (ENSOKIG00005008925)	ENSOKIG00005008878	ENSOKIG00005008866	ENSOKIG00005008824	ENSOKIG00005008815	ENSOKIG00005008699	ENSOKIG00005008566	SMIM19 (ENSOKIG00005008515)	ENSOKIG00005008488	pcdh10b (ENSOKIG00005008468) #11	PCDH18 (ENSOKIG00005008458) #15	ENSOKIG00005007260	ENSOKIG00005007191	elf2a (ENSOKIG00005007122) #20	ENSOKIG00005007100	naa15a (ENSOKIG00005006903) #22	mlsl (ENSOKIG00005006723)	rab33ba (ENSOKIG00005006704) #25	SCOC (ENSOKIG00005006681) #32	ENSOKIG00005006676	ENSOKIG00005006664	ENSOKIG00005006651	ENSOKIG00005004593	ENSOKIG00005004289	rap2c (ENSOKIG00005004262)	zgc:92907 (ENSOKIG00005031117)	ENSOKIG00005031100	FOXO4 (ENSOKIG00005031081)	SNX12 (ENSOKIG00005031024)	SLC7A3 (ENSOKIG00005030938)	ubl3b (ENSOKIG00005030916)
Huchen	MODERN SPECIES	819														elf2a (ENSHHUG00000051111) #20	ENSHHUG00000051123	naa15a (ENSHHUG00000051128) #22	mlsl (ENSHHUG00000051344)	rab33ba (ENSHHUG00000051354) #25	ENSHHUG00000051358	SCOC (ENSHHUG00000051360) #32	zgc:154054 (ENSHHUG00000051362)	ENSHHUG00000051365	ENSHHUG00000030207	hars (ENSHHUG00000030212)	ENSHHUG00000030295	gfra3 (ENSHHUG00000030302)	rap2c (ENSHHUG00000030306)	zgc:92907 (ENSHHUG00000030323)	ENSHHUG00000030333	FOXO4 (ENSHHUG00000030342)	SNX12 (ENSHHUG00000030343)
Salmoninae	ANCESTRAL SPECIES	714									ENSGT00940000163454.a.a.a.a	ENSGT00940000163454.a.a.b	ENSGT01050000245024	ENSGT00950000183130.A	ENSGT00950000182915.a.a.b.c.a #33	ENSGT00390000008828.fb.b #32	ENSGT00870000137155	ENSGT00950000183174.B.a.f.d #22	ENSGT00940000157090.h #25	ENSGT00940000154953.b.d #20	ENSGT00940000155249.g #19
Salmoninae_a	ANCESTRAL SPECIES	171											ENSGT01050000245024	ENSGT00940000163454.a.a.b	ENSGT00940000163454.a.a.a.a	ENSGT00950000183130.A	ENSGT00950000182915.a.a.b.d #33	ENSGT00950000183174.B.a.f.d #22	ENSGT00940000157090.h #25	ENSGT00940000154953.b.c.b.a #20	ENSGT00950000182915.a.a.b.c.a #33	ENSGT00390000008828.fb.b #32	ENSGT00870000137155	ENSGT00900000143217	ENSGT00940000154953.b.d #20	ENSGT00940000155249.g #19
Salmo	ANCESTRAL SPECIES	242										ENSGT00950000182915.a.a.b.d #33	ENSGT00390000008828.fb.b.f #32	ENSGT00950000182915.a.a.b.c.a #33	ENSGT00950000183130.A	ENSGT00940000163454.a.a.a.a	ENSGT00940000163454.a.a.b	ENSGT00950000183174.B.a.f.d #22	ENSGT00940000157090.h #25	ENSGT00940000154953.b.c.b.a #20	ENSGT00940000155249.g #19
Atlantic salmon	DUPLICATION
Atlantic salmon	MODERN SPECIES	1096																ENSSSAG00000108127 #22	ENSSSAG00000093809 #25
Atlantic salmon	MODERN SPECIES	23						ENSSSAG00000091365 #15	ENSSSAG00000083887 #11	ENSSSAG00000097174	ENSSSAG00000111138	ENSSSAG00000002549	ENSSSAG00000085049	ENSSSAG00000112515 #33	ENSSSAG00000105865 #32	ENSSSAG00000092904	ENSSSAG00000084189	ENSSSAG00000093935 #22	ENSSSAG00000088158 #25	ENSSSAG00000090507	ENSSSAG00000057424	ENSSSAG00000121211	ENSSSAG00000010428 #20	ENSSSAG00000014849 #19	ENSSSAG00000089927	ENSSSAG00000082832	ENSSSAG00000098238	ENSSSAG00000105677	ENSSSAG00000109179	ENSSSAG00000104862	ENSSSAG00000003626	ENSSSAG00000015770	ENSSSAG00000083517
Elephant shark	MODERN SPECIES	1542	jade1 (ENSCMIG00000000525) #8	SCLT1 (ENSCMIG00000000439) #9	zgc:77739 (ENSCMIG00000000401) #10	ENSCMIG00000000394	ENSCMIG00000000385	ENSCMIG00000000377	ENSCMIG00000000368	ENSCMIG00000000343	ENSCMIG00000000339	pcdh18b (ENSCMIG00000000330) #15	SLC7A11 (ENSCMIG00000000285) #16	NOCT (ENSCMIG00000000263) #19	elf2b (ENSCMIG00000000255) #20	ENSCMIG00000000244	ENSCMIG00000000194	naa15b (ENSCMIG00000019736) #22	mlsl (ENSCMIG00000019728)	rab33ba (ENSCMIG00000019725) #25	ENSCMIG00000019724	zgc:113425 (ENSCMIG00000019723)	setd7 (ENSCMIG00000019722) #27	mgst2 (ENSCMIG00000019720) #30	ENSCMIG00000019719	ENSCMIG00000019717	ENSCMIG00000019716 ##31	SCOC (ENSCMIG00000019712) #32	clgn (ENSCMIG00000019687) #33	ENSCMIG00000019683	elmod2 (ENSCMIG00000019679) #35	ucp1 (ENSCMIG00000019678) #36	TBC1D9 (ENSCMIG00000019541) #37
Gnathostomata	ANCESTRAL SPECIES																	ENSGT00950000183174.B.b ##22
Euteleostomi	ANCESTRAL SPECIES	12	ENSGT01040000240375.D	ENSGT00940000155487	ENSGT00940000181563	ENSGT00940000157767	ENSGT00940000156894	ENSGT00900000143708	ENSGT00940000155454	ENSGT00940000155219	ENSGT00480000042679.b.b	ENSGT00390000013700	ENSGT00940000157039.b	ENSGT00390000013956	ENSGT00990000203769	ENSGT00940000164962	ENSGT00940000156877	ENSGT00950000183174.B.b ##22	ENSGT00940000166281	ENSGT00390000011709	ENSGT00390000006601	ENSGT00940000158106	ENSGT00940000153313.B	ENSGT01070000253816.a.a.b	ENSGT00390000013820	ENSGT00940000159907	ENSGT00390000006788.a.b	ENSGT00390000005130	ENSGT00390000000693	ENSGT00940000162467.b	ENSGT00940000163647	ENSGT00940000159144.B	ENSGT00390000003758
Actinopterygii	ANCESTRAL SPECIES	3	ENSGT01040000240375.D	ENSGT00940000155487	ENSGT00940000181563	ENSGT00940000157767	ENSGT00940000156894	ENSGT00900000143708	ENSGT00940000155454	ENSGT00940000155219	ENSGT00480000042679.b.b	ENSGT00390000013700	ENSGT00940000157039.b	ENSGT00390000013956	ENSGT00990000203769	ENSGT00940000164962	ENSGT00940000156877	ENSGT00950000183174.B.b ##22	ENSGT00940000166281	ENSGT00390000011709	ENSGT00390000006601	ENSGT00940000158106	ENSGT00940000153313.B	ENSGT01070000253816.a.a.b	ENSGT00390000013820	ENSGT00940000159907	ENSGT00390000006788.a.b	ENSGT00390000005130	ENSGT00390000000693	ENSGT00940000162467.b	ENSGT00940000163647	ENSGT00940000159144.B	ENSGT00390000003758
Neopterygii	ANCESTRAL SPECIES	13	ENSGT00940000158486	ENSGT00960000186835	ENSGT00390000018369	ENSGT00940000154925	ENSGT00950000183159.b.c.b	ENSGT00940000161074.a	ENSGT00390000015700.a	ENSGT00390000003706.a.b.b	ENSGT00390000010065	ENSGT00940000159395	ENSGT00940000155756	ENSGT00530000063872.B	ENSGT00390000017860.a.b	ENSGT00390000013956	ENSGT00940000156877	ENSGT00950000183174.B.b ##22	ENSGT00940000166281	ENSGT00390000011709	ENSGT00390000006601	ENSGT00940000158106	ENSGT00940000153313.B	ENSGT01070000253816.a.a.b	ENSGT00390000013820	ENSGT00940000159907	ENSGT00390000006788.a.b	ENSGT00390000005130	ENSGT00390000000693	ENSGT00940000162467.b	ENSGT00940000163647	ENSGT00940000159144.B	ENSGT00390000003758
Osteoglossocephalai	ANCESTRAL SPECIES	3	ENSGT00940000158486	ENSGT00960000186835	ENSGT00390000018369	ENSGT00940000154925	ENSGT00950000183159.b.c.b	ENSGT00940000161074.a	ENSGT00390000015700.a	ENSGT00390000003706.a.b.b	ENSGT00390000010065	ENSGT00940000159395	ENSGT00940000155756	ENSGT00530000063872.B	ENSGT00390000017860.a.b	ENSGT00990000203769	ENSGT00940000164962	ENSGT00950000183174.B.b ##22	ENSGT00390000011709	ENSGT00390000006601	ENSGT00940000158106	ENSGT00940000153313.B	ENSGT01070000253816.a.a.b	ENSGT00390000013820	ENSGT00940000159907	ENSGT00390000006788.a.b	ENSGT00390000000693	ENSGT00940000162467.b	ENSGT00940000159144.B	ENSGT00940000163647	ENSGT00940000166021	ENSGT00390000003758	ENSGT00390000012569.b
Osteoglossiformes	ANCESTRAL SPECIES	141	ENSGT00390000013790	ENSGT00390000015293	ENSGT00940000156711.m.b	ENSGT00940000158108.w	ENSGT00940000158486.e	ENSGT00390000018369	ENSGT00950000183159.b.c.a	ENSGT00940000161074.a.h	ENSGT00390000015700.a	ENSGT00390000003706.a.b.b	ENSGT00940000155756.k	ENSGT00530000063872.B	ENSGT00390000017860.a.b.h	ENSGT00990000203769	ENSGT00940000164962	ENSGT00950000183174.B.b ##22	ENSGT00390000011709	ENSGT00390000006601	ENSGT00940000158106	ENSGT00940000153313.B	ENSGT01070000253816.a.a.b	ENSGT00390000013820	ENSGT00940000159907	ENSGT00390000006788.a.b.b	ENSGT00390000000693	ENSGT00940000159552.j	ENSGT00390000016051	ENSGT00390000006051.s
P. kingsleyae	MODERN SPECIES		pibf1 (ENSPKIG00000005209)	KLF5 (ENSPKIG00000005265)	KLF12 (ENSPKIG00000005302)	TBC1D4 (ENSPKIG00000005397)	ENSPKIG00000005549	lmo7a (ENSPKIG00000005696)	kctd12.1 (ENSPKIG00000006101)	acod1 (ENSPKIG00000006117)	zgc:162944 (ENSPKIG00000006141)	fbxl3a (ENSPKIG00000006166)	mycbp2 (ENSPKIG00000006265)	ENSPKIG00000006445	SLAIN1 (ENSPKIG00000006586)	ENSPKIG00000006624	ENSPKIG00000006639	NAA16 (ENSPKIG00000006679) ##22	rgcc (ENSPKIG00000006755)	vwa8 (ENSPKIG00000006831)	DGKH (ENSPKIG00000007052)	AKAP11 (ENSPKIG00000007325)	ENSPKIG00000007351	ENOX1 (ENSPKIG00000007387)	serp2 (ENSPKIG00000007422)	ENSPKIG00000007431	ENSPKIG00000007449	NUFIP1 (ENSPKIG00000007471)	ENSPKIG00000007507	kctd4 (ENSPKIG00000007537)	tpt1 (ENSPKIG00000007549)	VGLL3 (ENSPKIG00000007578)	efnb2b (ENSPKIG00000007603)
Asian bonytongue	MODERN SPECIES	3	bora (ENSSFOG00015022248)	pibf1 (ENSSFOG00015022314)	KLF5 (ENSSFOG00015022337)	KLF12 (ENSSFOG00015022339)	TBC1D4 (ENSSFOG00015022376)	ENSSFOG00015022491	LMO7 (ENSSFOG00015022514)	kctd12.1 (ENSSFOG00015025307)	acod1 (ENSSFOG00015029873)	fbxl3a (ENSSFOG00015022569)	mycbp2 (ENSSFOG00015033251)	ENSSFOG00015022627	SLAIN1 (ENSSFOG00015022672)	ENSSFOG00015022680	ENSSFOG00015022682	NAA16 (ENSSFOG00015022700) ##22	rgcc (ENSSFOG00015031869)	vwa8 (ENSSFOG00015022770)	ENSSFOG00015022827	AKAP11 (ENSSFOG00015022855)	ENSSFOG00015031767	ENOX1 (ENSSFOG00015022895)	SERP2 (ENSSFOG00015027211)	ENSSFOG00015029038	ENSSFOG00015028478	ENSSFOG00015022927	gpalpp1 (ENSSFOG00015022945)	kctd4 (ENSSFOG00015031071)	tpt1 (ENSSFOG00015029673)	VGLL3 (ENSSFOG00015022971)	chmp2ba (ENSSFOG00015022979)
Spotted gar	MODERN SPECIES	655	gtf2e1 (ENSLOCG00000006285)	rabl3 (ENSLOCG00000006265)	gzm3.4 (ENSLOCG00000006230)	ercc1 (ENSLOCG00000006213)	kctd12.1 (ENSLOCG00000017786)	acod1 (ENSLOCG00000006179)	zgc:162944 (ENSLOCG00000006169)	CLN5 (ENSLOCG00000006151)	fbxl3a (ENSLOCG00000006132)	mycbp2 (ENSLOCG00000006053)	ENSLOCG00000006032	slain1a (ENSLOCG00000006004)	WBP4 (ENSLOCG00000005967)	ENSLOCG00000005953	MTRF1 (ENSLOCG00000005937)	NAA16 (ENSLOCG00000005914) ##22	zgc:101559 (ENSLOCG00000005904)	rgcc (ENSLOCG00000005886)	vwa8 (ENSLOCG00000005831)	DGKH (ENSLOCG00000005796)	AKAP11 (ENSLOCG00000005768)	ENSLOCG00000005745	EPSTI1 (ENSLOCG00000005706)	dnajc15 (ENSLOCG00000005690)	ENOX1 (ENSLOCG00000005664)	ENSLOCG00000005651	LACC1 (ENSLOCG00000005637)	serp2 (ENSLOCG00000005623)	tsc22d1 (ENSLOCG00000005602)	NUFIP1 (ENSLOCG00000005561)	gpalpp1 (ENSLOCG00000005528)
Reedfish	MODERN SPECIES	12	pcdh8 (ENSECRG00000019040)	OLFM4 (ENSECRG00000019057)	OLFM4 (ENSECRG00000019082)	OLFM4 (ENSECRG00000019120)	OLFM4 (ENSECRG00000019145)	OLFM4 (ENSECRG00000019188)	PCDH8 (ENSECRG00000019234)	CNMD (ENSECRG00000019260)	sugt1 (ENSECRG00000019304)	flr (ENSECRG00000019520)	ELF1 (ENSECRG00000019865)	WBP4 (ENSECRG00000019911)	ENSECRG00000019954	ENSECRG00000019989	MTRF1 (ENSECRG00000020293)	NAA16 (ENSECRG00000020321) ##22	rgcc (ENSECRG00000020346)	vwa8 (ENSECRG00000020374)	DGKH (ENSECRG00000020480)	AKAP11 (ENSECRG00000020561)	TNFSF11 (ENSECRG00000020576)	ENOX1 (ENSECRG00000005406)	ENSECRG00000005449	LACC1 (ENSECRG00000005470)	ENSECRG00000005484	ENSECRG00000005495	ENSECRG00000005504	NUFIP1 (ENSECRG00000005513)	gpalpp1 (ENSECRG00000005528)	gtf2f2b (ENSECRG00000005540)	kctd4 (ENSECRG00000005547)
Sarcopterygii	ANCESTRAL SPECIES	11	ENSGT00940000156743	ENSGT01040000240375.D	ENSGT00940000155487	ENSGT00940000181563	ENSGT00940000157767	ENSGT00940000156894	ENSGT00900000143708	ENSGT00940000155219	ENSGT00480000042679.b.b	ENSGT00390000013700	ENSGT00940000157039.b	ENSGT00390000013956	ENSGT00990000203769	ENSGT00940000164962	ENSGT00940000156877	ENSGT00950000183174.B.b ##22	ENSGT00940000166281	ENSGT00390000011709	ENSGT00390000006601	ENSGT00940000158106	ENSGT00940000153313.B	ENSGT01070000253816.a.a.b	ENSGT00390000013820	ENSGT00940000159907	ENSGT00390000006788.a.b	ENSGT00390000005130	ENSGT00390000000693	ENSGT00940000162467.b	ENSGT00940000163647	ENSGT00940000159144.B	ENSGT00390000003758
Tetrapoda	ANCESTRAL SPECIES		ENSGT00940000156743	ENSGT01040000240375.D	ENSGT00940000155487	ENSGT00940000181563	ENSGT00940000157767	ENSGT00900000143708	ENSGT00940000156894	ENSGT00940000155219	ENSGT00480000042679.b.b	ENSGT00390000013700	ENSGT00940000157039.b	ENSGT00390000013956	ENSGT00990000203769	ENSGT00940000164962	ENSGT00940000156877	ENSGT00950000183174.B.b ##22	ENSGT00390000011709	ENSGT00390000006601	ENSGT00940000158106	ENSGT00940000153313.B	ENSGT01070000253816.a.a.b	ENSGT00390000013820	ENSGT00940000159907	ENSGT00390000006788.a.b	ENSGT00390000005130	ENSGT00390000000693	ENSGT00940000162467.b	ENSGT00940000163647	ENSGT00940000159144.B	ENSGT00390000003758	ENSGT00390000012569.b
Amniota	ANCESTRAL SPECIES		ENSGT00940000156743	ENSGT00940000155487	ENSGT00940000181563	ENSGT00940000157767	ENSGT00940000156894	ENSGT00900000143708	ENSGT00940000155454	ENSGT00940000155219	ENSGT00480000042679.b.b	ENSGT00390000013700	ENSGT00940000157039.b	ENSGT00390000013956	ENSGT00990000203769	ENSGT00940000164962	ENSGT00940000156877	ENSGT00950000183174.B.b ##22	ENSGT00390000011709	ENSGT00390000006601	ENSGT00940000158106	ENSGT00940000153313.B	ENSGT01070000253816.a.a.b	ENSGT00940000154512	ENSGT00390000013820	ENSGT00940000159907	ENSGT00390000006788.a.b	ENSGT00390000005130	ENSGT00390000000693	ENSGT00940000162467.b	ENSGT00940000163647	ENSGT00940000159144.B	ENSGT00390000003758
Mammalia	ANCESTRAL SPECIES		ENSGT00940000156743	ENSGT00940000155487	ENSGT00940000181563	ENSGT00940000157767	ENSGT00940000156894	ENSGT00900000143708	ENSGT00940000155454	ENSGT00940000155219	ENSGT00480000042679.b.b	ENSGT00390000013700	ENSGT00940000157039.b	ENSGT00390000013956	ENSGT00990000203769	ENSGT00940000164962	ENSGT00940000156877	ENSGT00950000183174.B.b ##22	ENSGT00390000011709	ENSGT00390000006601	ENSGT00940000158106	ENSGT00940000153313.B	ENSGT01070000253816.a.a.b	ENSGT00940000154512	ENSGT00390000013820	ENSGT00940000159907	ENSGT00390000006788.a.b	ENSGT00390000005130	ENSGT00390000000693	ENSGT00940000162467.b	ENSGT00940000163647	ENSGT00940000159144.B	ENSGT00390000003758
Theria	ANCESTRAL SPECIES	1	ENSGT00940000156743	ENSGT00940000155487	ENSGT00940000181563	ENSGT00940000157767	ENSGT00940000156894	ENSGT00900000143708	ENSGT00940000155454	ENSGT00940000155219	ENSGT00480000042679.b.b	ENSGT00390000013700	ENSGT00940000157039.b	ENSGT00390000013956	ENSGT00990000203769	ENSGT00940000164962	ENSGT00940000156877	ENSGT00950000183174.B.b ##22	ENSGT00390000011709	ENSGT00390000006601	ENSGT00940000158106	ENSGT00940000153313.B	ENSGT01070000253816.a.a.b	ENSGT00940000154512.a	ENSGT00390000013820	ENSGT00940000159907	ENSGT00390000006788.a.b	ENSGT00390000005130	ENSGT00390000000693	ENSGT00940000162467.b	ENSGT00940000163647	ENSGT00940000159144.B	ENSGT00390000003758
Marsupialia	ANCESTRAL SPECIES	8	ENSGT00940000155487	ENSGT00940000181563	ENSGT00940000157767	ENSGT00940000157843	ENSGT00900000143582	ENSGT00940000156894	ENSGT00940000155454	ENSGT00940000155219	ENSGT00480000042679.b.b	ENSGT00390000013700	ENSGT00940000157039.b	ENSGT00390000013956	ENSGT00990000203769	ENSGT00940000164962	ENSGT00940000156877	ENSGT00950000183174.B.b ##22	ENSGT00390000011709	ENSGT00390000006601	ENSGT00940000158106	ENSGT00940000153313.B	ENSGT01070000253816.a.a.b	ENSGT00390000013820	ENSGT00940000159907	ENSGT00390000006788.a.b	ENSGT00390000005130	ENSGT00390000000693	ENSGT00940000162467.b	ENSGT00940000159144.B	ENSGT00390000003758	ENSGT00390000012569.b	ENSGT00940000159552
Marsupialia_b	ANCESTRAL SPECIES	7	ENSGT00940000181563	ENSGT00940000157767	ENSGT00940000157843	ENSGT00900000143582	ENSGT00940000156894	ENSGT00940000153700.jc.a.a.b	ENSGT00940000155454	ENSGT00940000155219	ENSGT00480000042679.b.b	ENSGT00390000013700	ENSGT00940000157039.b	ENSGT00390000013956	ENSGT00990000203769	ENSGT00940000164962.a	ENSGT00940000156877	ENSGT00950000183174.B.b ##22	ENSGT00390000011709	ENSGT00390000006601	ENSGT00940000158106	ENSGT00940000153313.B	ENSGT01070000253816.a.a.b	ENSGT00390000013820	ENSGT00940000159907	ENSGT00390000006788.a.b	ENSGT00390000005130	ENSGT00390000000693	ENSGT00940000162467.b	ENSGT00940000159144.B	ENSGT00390000003758	ENSGT00390000012569.b	ENSGT00940000159552
Diprotodontia	ANCESTRAL SPECIES	31							ENSGT00940000155454	ENSGT00940000155219	ENSGT00480000042679.b.b	ENSGT00390000013700	ENSGT00940000157039.b	ENSGT00390000013956	ENSGT00990000203769	ENSGT00940000164962.a	ENSGT00940000156877	ENSGT00950000183174.B.b ##22	ENSGT00390000011709	ENSGT00390000006601	ENSGT00940000158106	ENSGT00940000153313.B	ENSGT01070000253816.a.a.b	ENSGT00390000013820	ENSGT00940000159907	ENSGT00390000006788.a.b	ENSGT00390000005130	ENSGT00390000000693	ENSGT00940000162467.b	ENSGT00940000159144.B	ENSGT00390000003758	ENSGT00390000012569.b	ENSGT00940000159552
Diprotodontia_a	ANCESTRAL SPECIES	30							ENSGT00940000155454	ENSGT00940000155219	ENSGT00480000042679.b.b	ENSGT00390000013700	ENSGT00940000157039.b	ENSGT00390000013956.a	ENSGT00990000203769	ENSGT00940000164962.a	ENSGT00940000156877	ENSGT00950000183174.B.b ##22	ENSGT00390000011709	ENSGT00390000006601	ENSGT00940000158106	ENSGT00940000153313.B	ENSGT01070000253816.a.a.b	ENSGT00390000013820	ENSGT00940000159907	ENSGT00390000006788.a.b	ENSGT00390000005130	ENSGT00390000000693	ENSGT00940000162467.b	ENSGT00940000159144.B	ENSGT00390000003758	ENSGT00390000012569.b	ENSGT00940000159552
koala	DUPLICATION
koala	MODERN SPECIES	307					ENSPCIG00000018583	OLFM4 (ENSPCIG00000036054)	PCDH8 (ENSPCIG00000012919)	CNMD (ENSPCIG00000012920)	SUGT1 (ENSPCIG00000012922)	ELF1 (ENSPCIG00000012932)	ENSPCIG00000012936	ENSPCIG00000035197	ENSPCIG00000012938	MTRF1 (ENSPCIG00000012940)	ENSPCIG00000012948 ##22	ENSPCIG00000034063 ##22	RGCC (ENSPCIG00000012956)	VWA8 (ENSPCIG00000012960)	DGKH (ENSPCIG00000012983)	AKAP11 (ENSPCIG00000013002)	TNFSF11 (ENSPCIG00000018741)
koala	MODERN SPECIES	307						ENSPCIG00000018583	OLFM4 (ENSPCIG00000036054)	PCDH8 (ENSPCIG00000012919)	CNMD (ENSPCIG00000012920)	SUGT1 (ENSPCIG00000012922)	ELF1 (ENSPCIG00000012932)	ENSPCIG00000012936	ENSPCIG00000035197	ENSPCIG00000012938	MTRF1 (ENSPCIG00000012940)	ENSPCIG00000012948 ##22	ENSPCIG00000034063 ##22	RGCC (ENSPCIG00000012956)	VWA8 (ENSPCIG00000012960)	DGKH (ENSPCIG00000012983)	AKAP11 (ENSPCIG00000013002)	TNFSF11 (ENSPCIG00000018741)
Common wonbat	DUPLICATION
Common wonbat	MODERN SPECIES	1038			ENSVURG00010009695	ENSVURG00010009692	ENSVURG00010009690	ENSVURG00010009679	PCDH8 (ENSVURG00010009669)	CNMD (ENSVURG00010009659)	SUGT1 (ENSVURG00010009644)	ELF1 (ENSVURG00010009633)	ENSVURG00010009621	ENSVURG00010009611	MTRF1 (ENSVURG00010009603)	ENSVURG00010009596	ENSVURG00010009594 ##22	ENSVURG00010009585 ##22	RGCC (ENSVURG00010009578)	VWA8 (ENSVURG00010009546)	DGKH (ENSVURG00010009526)	AKAP11 (ENSVURG00010009504)	TNFSF11 (ENSVURG00010009490)	EPSTI1 (ENSVURG00010009463)	DNAJC15 (ENSVURG00010009445)	ENOX1 (ENSVURG00010009418)	CCDC122 (ENSVURG00010009366)	LACC1 (ENSVURG00010009356)	ENSVURG00010009327	ENSVURG00010009282	ENSVURG00010009277	KCTD4 (ENSVURG00010009263)	ENSVURG00010009253
Common wonbat	MODERN SPECIES	1038				ENSVURG00010009695	ENSVURG00010009692	ENSVURG00010009690	ENSVURG00010009679	PCDH8 (ENSVURG00010009669)	CNMD (ENSVURG00010009659)	SUGT1 (ENSVURG00010009644)	ELF1 (ENSVURG00010009633)	ENSVURG00010009621	ENSVURG00010009611	MTRF1 (ENSVURG00010009603)	ENSVURG00010009596	ENSVURG00010009594 ##22	ENSVURG00010009585 ##22	RGCC (ENSVURG00010009578)	VWA8 (ENSVURG00010009546)	DGKH (ENSVURG00010009526)	AKAP11 (ENSVURG00010009504)	TNFSF11 (ENSVURG00010009490)	EPSTI1 (ENSVURG00010009463)	DNAJC15 (ENSVURG00010009445)	ENOX1 (ENSVURG00010009418)	CCDC122 (ENSVURG00010009366)	LACC1 (ENSVURG00010009356)	ENSVURG00010009327	ENSVURG00010009282	ENSVURG00010009277	KCTD4 (ENSVURG00010009263)
Wallaby	MODERN SPECIES	8150																NAA16 (ENSMEUG00000002578) ##22
Tasmanian devil	MODERN SPECIES	2	ENSSHAG00000020824	ENSSHAG00000015066	ENSSHAG00000029234	PCDH17 (ENSSHAG00000030397)	ENSSHAG00000031334	ENSSHAG00000011884	ENSSHAG00000030587	OLFM4 (ENSSHAG00000017198)	PCDH8 (ENSSHAG00000024494)	ENSSHAG00000021232	ENSSHAG00000027194	ENSSHAG00000017887	WBP4 (ENSSHAG00000018027)	ENSSHAG00000023806	MTRF1 (ENSSHAG00000018109)	NAA16 (ENSSHAG00000018196) ##22	RGCC (ENSSHAG00000029520)	VWA8 (ENSSHAG00000027337)	ENSSHAG00000022714	DGKH (ENSSHAG00000001014)	AKAP11 (ENSSHAG00000022883)	TNFSF11 (ENSSHAG00000001297)	ENSSHAG00000010849	DNAJC15 (ENSSHAG00000011722)	ENOX1 (ENSSHAG00000012702)	CCDC122 (ENSSHAG00000022118)	ENSSHAG00000015643	ENSSHAG00000023950	ENSSHAG00000029832	ENSSHAG00000002127	ENSSHAG00000003663
Opossum	MODERN SPECIES	6	ENSMODG00000048827	ENSMODG00000028702	ENSMODG00000044832	ENSMODG00000046257	ENSMODG00000024964	ENSMODG00000014727	OLFM4 (ENSMODG00000047878)	PCDH8 (ENSMODG00000014739)	CNMD (ENSMODG00000014743)	SUGT1 (ENSMODG00000014748)	ELF1 (ENSMODG00000014756)	WBP4 (ENSMODG00000014761)	ENSMODG00000045233	ENSMODG00000050131	MTRF1 (ENSMODG00000014772)	NAA16 (ENSMODG00000014799) ##22	RGCC (ENSMODG00000014805)	VWA8 (ENSMODG00000014823)	ENSMODG00000046520	DGKH (ENSMODG00000014844)	AKAP11 (ENSMODG00000014848)	ENSMODG00000046331	ENSMODG00000051302	ENSMODG00000024949	TNFSF11 (ENSMODG00000014856)	ENSMODG00000042637	ENSMODG00000025483	DNAJC15 (ENSMODG00000014875)	ENOX1 (ENSMODG00000014885)	ENSMODG00000014889	LACC1 (ENSMODG00000014893)
Eutheria	ANCESTRAL SPECIES	17	ENSGT00940000155079.b	ENSGT00940000156743	ENSGT00940000155487	ENSGT00940000157767	ENSGT00940000156894	ENSGT00900000143708	ENSGT00940000155454	ENSGT00940000155219	ENSGT00480000042679.b.b	ENSGT00390000013700	ENSGT00940000157039.b	ENSGT00390000013956	ENSGT00940000155175.B	ENSGT00940000155175.C	ENSGT00940000156877	ENSGT00950000183174.B.b ##22	ENSGT00390000011709	ENSGT00390000006601	ENSGT00940000164406	ENSGT00940000158106	ENSGT00940000153313.B	ENSGT01070000253816.a.a.b	ENSGT00940000154512.a	ENSGT00390000013820	ENSGT00940000159907	ENSGT00390000006788.a.b	ENSGT00390000005130	ENSGT00390000000693	ENSGT00940000162467.b	ENSGT00940000163647	ENSGT00940000159144.B
Boreoeutheria	ANCESTRAL SPECIES	21	ENSGT00940000157767	ENSGT00950000185064	ENSGT00900000143582	ENSGT00940000156894	ENSGT00900000143708	ENSGT00940000155454	ENSGT00940000155219	ENSGT00480000042679.b.b	ENSGT00390000013700	ENSGT00950000186331	ENSGT00940000157039.b	ENSGT00390000013956	ENSGT00940000155175.B	ENSGT00940000155175.A	ENSGT00940000156877	ENSGT00950000183174.B.b ##22	ENSGT00550000076230	ENSGT00390000011709	ENSGT00390000006601	ENSGT00940000164406	ENSGT00940000158106	ENSGT00940000153313.B	ENSGT01070000253816.a.a.b	ENSGT00940000154512.a	ENSGT00390000013820	ENSGT00940000159907	ENSGT00390000006788.a.b	ENSGT00390000005130	ENSGT00390000000693	ENSGT00390000014262	ENSGT00940000162467.b
Laurasiatheria	ANCESTRAL SPECIES	20	ENSGT00940000157767	ENSGT00950000185064	ENSGT00900000143582	ENSGT00940000156894	ENSGT00900000143708	ENSGT00940000155454	ENSGT00940000155219	ENSGT00480000042679.b.b	ENSGT00390000013700	ENSGT00950000186331	ENSGT00940000157039.b	ENSGT00390000013956	ENSGT00940000155175.B	ENSGT00940000155175.A	ENSGT00940000156877	ENSGT00950000183174.B.b ##22	ENSGT00550000076230	ENSGT00390000011709	ENSGT00390000006601	ENSGT00940000164406	ENSGT00940000158106	ENSGT00940000153313.B	ENSGT01070000253816.a.a.b	ENSGT00940000154512.a	ENSGT00390000013820	ENSGT00940000159907	ENSGT00390000006788.a.b	ENSGT00390000005130	ENSGT00390000000693	ENSGT00390000014262	ENSGT00940000162467.b
Eulipotyphla	ANCESTRAL SPECIES	111													ENSGT00940000155175.B	ENSGT00940000155175.A	ENSGT00940000156877	ENSGT00950000183174.B.b ##22	ENSGT00390000011709	ENSGT00390000006601
Common shrew	MODERN SPECIES	4645													KBTBD6 (ENSSARG00000002263)	KBTBD7 (ENSSARG00000002271)	MTRF1 (ENSSARG00000002306)	NAA16 (ENSSARG00000002325) ##22	ENSSARG00000002397	VWA8 (ENSSARG00000002417)
Laurasiatheria_a	ANCESTRAL SPECIES	21	ENSGT00940000157767	ENSGT00950000185064	ENSGT00900000143582	ENSGT00940000156894	ENSGT00900000143708	ENSGT00940000155454	ENSGT00940000155219	ENSGT00480000042679.b.b	ENSGT00390000013700	ENSGT00950000186331	ENSGT00940000157039.b	ENSGT00390000013956	ENSGT00940000155175.B	ENSGT00940000155175.A	ENSGT00940000156877	ENSGT00950000183174.B.b ##22	ENSGT00550000076230	ENSGT00390000011709	ENSGT00390000006601	ENSGT00940000164406	ENSGT00940000158106	ENSGT00940000153313.B	ENSGT01070000253816.a.a.b	ENSGT00940000154512.a	ENSGT00390000013820	ENSGT00940000159907	ENSGT00390000006788.a.b	ENSGT00390000005130	ENSGT00390000000693	ENSGT00390000014262	ENSGT00940000162467.b
Laurasiatheria_b	ANCESTRAL SPECIES	21	ENSGT00940000155487	ENSGT00940000157767	ENSGT00900000143582	ENSGT00940000156894	ENSGT00900000143708	ENSGT00940000155454	ENSGT00940000155219	ENSGT00480000042679.b.b	ENSGT00390000013700	ENSGT00950000186331	ENSGT00940000157039.b	ENSGT00390000013956	ENSGT00940000155175.B	ENSGT00940000155175.A	ENSGT00940000156877	ENSGT00950000183174.B.b ##22	ENSGT00550000076230	ENSGT00390000011709	ENSGT00390000006601	ENSGT00940000158106	ENSGT00940000153313.B	ENSGT01070000253816.a.a.b	ENSGT00940000154512.a	ENSGT00390000013820	ENSGT00940000159907	ENSGT00390000006788.a.b	ENSGT00390000005130	ENSGT00390000000693	ENSGT00390000014262	ENSGT00940000162467.b	ENSGT00940000163647
Carnivora	ANCESTRAL SPECIES	23	ENSGT00940000157767	ENSGT00900000143582	ENSGT00940000156894	ENSGT00900000143708	ENSGT00900000143309	ENSGT00950000185146	ENSGT00940000155454	ENSGT00940000155219	ENSGT00480000042679.b.b	ENSGT00390000013700	ENSGT00940000157039.b	ENSGT00390000013956	ENSGT00940000155175.B	ENSGT00940000155175.A	ENSGT00940000156877	ENSGT00950000183174.B.b ##22	ENSGT00550000076230	ENSGT00390000011709	ENSGT00390000006601	ENSGT00940000158106	ENSGT00940000153313.B	ENSGT01070000253816.a.a.b	ENSGT00940000154512.a	ENSGT00390000013820	ENSGT00940000159907	ENSGT00390000006788.a.b	ENSGT00390000005130	ENSGT00390000000693	ENSGT00390000014262	ENSGT00940000162467.b	ENSGT00940000163647
Felidae	ANCESTRAL SPECIES	23	ENSGT00940000155079.b	ENSGT00940000156743	ENSGT00940000155487	ENSGT00940000157767	ENSGT00900000143582	ENSGT00940000156894	ENSGT00940000155454	ENSGT00940000155219	ENSGT00480000042679.b.b	ENSGT00390000013700	ENSGT00940000157039.b	ENSGT00390000013956	ENSGT00940000155175.B	ENSGT00940000155175.A	ENSGT00940000156877	ENSGT00950000183174.B.b ##22	ENSGT00550000076230	ENSGT00390000011709	ENSGT00390000006601	ENSGT00940000158106	ENSGT00940000153313.B	ENSGT01070000253816.a.a.b	ENSGT00940000154512.a	ENSGT00390000013820	ENSGT00940000159907	ENSGT00390000006788.a.b	ENSGT00390000005130	ENSGT00390000000693	ENSGT00940000162467.b	ENSGT00940000159144.B	ENSGT00390000016988.a.a.a.b.a.b.a.a
Panthera	ANCESTRAL SPECIES	21	ENSGT00940000156743	ENSGT00940000155487	ENSGT00940000157767	ENSGT00980000200292	ENSGT00900000143582	ENSGT00940000156894	ENSGT00940000155454	ENSGT00940000155219	ENSGT00480000042679.b.b	ENSGT00390000013700	ENSGT00940000157039.b	ENSGT00390000013956	ENSGT00940000155175.B	ENSGT00940000155175.A	ENSGT00940000156877	ENSGT00950000183174.B.b ##22	ENSGT00550000076230	ENSGT00390000011709	ENSGT00390000006601	ENSGT00940000158106	ENSGT00940000153313.B	ENSGT01070000253816.a.a.b	ENSGT00940000154512.a	ENSGT00390000013820	ENSGT00940000159907	ENSGT00390000006788.a.b	ENSGT00390000006696.db	ENSGT00390000005130	ENSGT00390000000693	ENSGT00940000162467.b	ENSGT00940000159144.B
Panthera_a	ANCESTRAL SPECIES	23	ENSGT00940000156743	ENSGT00940000155487	ENSGT00940000157767	ENSGT00980000200292	ENSGT00900000143582	ENSGT00940000156894	ENSGT00940000155454	ENSGT00940000155219	ENSGT00480000042679.b.b	ENSGT00390000013700	ENSGT00940000157039.b	ENSGT00390000013956	ENSGT00940000155175.B	ENSGT00940000155175.A	ENSGT00940000156877	ENSGT00950000183174.B.b ##22	ENSGT00550000076230	ENSGT00390000011709	ENSGT00390000006601	ENSGT00940000158106	ENSGT00940000153313.B	ENSGT01070000253816.a.a.b	ENSGT00940000154512.a	ENSGT00390000013820	ENSGT00940000159907	ENSGT00390000006788.a.b	ENSGT00390000006696.db	ENSGT00390000005130	ENSGT00390000000693	ENSGT00940000162467.b	ENSGT00940000159144.B
leopard	MODERN SPECIES	14					ENSPPRG00000013617	OLFM4 (ENSPPRG00000013541)	ENSPPRG00000013420	PCDH8 (ENSPPRG00000013087)	CNMD (ENSPPRG00000012553)	SUGT1 (ENSPPRG00000011927)	ELF1 (ENSPPRG00000010166)	WBP4 (ENSPPRG00000009978)	KBTBD6 (ENSPPRG00000009810)	KBTBD7 (ENSPPRG00000017314)	MTRF1 (ENSPPRG00000009511)	NAA16 (ENSPPRG00000008553) ##22	ENSPPRG00000017124	ENSPPRG00000017108	RGCC (ENSPPRG00000007126)	VWA8 (ENSPPRG00000006962)	DGKH (ENSPPRG00000003603)	AKAP11 (ENSPPRG00000000675)	TNFSF11 (ENSPPRG00000000387)	FAM216B (ENSPPRG00000022155)	EPSTI1 (ENSPPRG00000020685)	DNAJC15 (ENSPPRG00000017077)	ENOX1 (ENSPPRG00000016584)	ENSPPRG00000016466	CCDC122 (ENSPPRG00000014639)	LACC1 (ENSPPRG00000014453)	SERP2 (ENSPPRG00000013094)
lion	MODERN SPECIES	1	PCDH20 (ENSPLOG00000010988)	TDRD3 (ENSPLOG00000011058)	DIAPH3 (ENSPLOG00000011292)	ENSPLOG00000012042	ENSPLOG00000012058	PCDH17 (ENSPLOG00000012087)	OLFM4 (ENSPLOG00000012216)	PCDH8 (ENSPLOG00000012248)	CNMD (ENSPLOG00000012326)	SUGT1 (ENSPLOG00000012464)	ELF1 (ENSPLOG00000012608)	WBP4 (ENSPLOG00000012662)	KBTBD6 (ENSPLOG00000012750)	KBTBD7 (ENSPLOG00000012777)	MTRF1 (ENSPLOG00000012808)	NAA16 (ENSPLOG00000013005) ##22	RGCC (ENSPLOG00000013395)	VWA8 (ENSPLOG00000013476)	DGKH (ENSPLOG00000013638)	AKAP11 (ENSPLOG00000013869)	TNFSF11 (ENSPLOG00000013952)	FAM216B (ENSPLOG00000014067)	EPSTI1 (ENSPLOG00000014127)	DNAJC15 (ENSPLOG00000014175)	ENOX1 (ENSPLOG00000014204)	ENSPLOG00000014335	CCDC122 (ENSPLOG00000014352)	LACC1 (ENSPLOG00000014380)	SERP2 (ENSPLOG00000014453)	TSC22D1 (ENSPLOG00000014492)	ENSPLOG00000014565
Tiger	MODERN SPECIES	221						ENSPTIG00000005868	PCDH17 (ENSPTIG00000020639)	OLFM4 (ENSPTIG00000020774)	ENSPTIG00000021180	CNMD (ENSPTIG00000021297)	SUGT1 (ENSPTIG00000021452)	ELF1 (ENSPTIG00000021757)	WBP4 (ENSPTIG00000003187)	KBTBD7 (ENSPTIG00000005920)	MTRF1 (ENSPTIG00000006673)	NAA16 (ENSPTIG00000007921) ##22	ENSPTIG00000005941	VWA8 (ENSPTIG00000011005)	DGKH (ENSPTIG00000016136)	AKAP11 (ENSPTIG00000004721)	TNFSF11 (ENSPTIG00000007595)	FAM216B (ENSPTIG00000010708)	EPSTI1 (ENSPTIG00000011254)	DNAJC15 (ENSPTIG00000013715)	ENOX1 (ENSPTIG00000014489)	ENSPTIG00000006302	CCDC122 (ENSPTIG00000015450)	LACC1 (ENSPTIG00000016230)	SERP2 (ENSPTIG00000017877)	ENSPTIG00000018215	ENSPTIG00000019134
Cat	MODERN SPECIES		PCDH20 (ENSFCAG00000024165)	TDRD3 (ENSFCAG00000022126)	DIAPH3 (ENSFCAG00000027832)	ENSFCAG00000053374	PCDH17 (ENSFCAG00000024553)	ENSFCAG00000035797	OLFM4 (ENSFCAG00000031021)	PCDH8 (ENSFCAG00000010132)	CNMD (ENSFCAG00000010131)	SUGT1 (ENSFCAG00000005544)	ELF1 (ENSFCAG00000029010)	WBP4 (ENSFCAG00000035581)	KBTBD6 (ENSFCAG00000034478)	KBTBD7 (ENSFCAG00000006263)	MTRF1 (ENSFCAG00000031635)	NAA16 (ENSFCAG00000007219) ##22	RGCC (ENSFCAG00000038293)	VWA8 (ENSFCAG00000005291)	DGKH (ENSFCAG00000005292)	AKAP11 (ENSFCAG00000005913)	TNFSF11 (ENSFCAG00000005912)	FAM216B (ENSFCAG00000039318)	EPSTI1 (ENSFCAG00000030356)	DNAJC15 (ENSFCAG00000022632)	ENOX1 (ENSFCAG00000010984)	CCDC122 (ENSFCAG00000025660)	LACC1 (ENSFCAG00000043479)	SERP2 (ENSFCAG00000044942)	TSC22D1 (ENSFCAG00000025840)	ENSFCAG00000028134	NUFIP1 (ENSFCAG00000013715)
Caniformia	ANCESTRAL SPECIES	24	ENSGT00950000185064	ENSGT00900000143582	ENSGT00940000156894	ENSGT00900000143708	ENSGT00900000143309	ENSGT00950000185146.d	ENSGT00940000155454	ENSGT00940000155219	ENSGT00480000042679.b.b	ENSGT00390000013700	ENSGT00940000157039.b	ENSGT00390000013956	ENSGT00940000155175.B	ENSGT00940000155175.A	ENSGT00940000156877	ENSGT00950000183174.B.b ##22	ENSGT00550000076230	ENSGT00390000011709	ENSGT00390000006601	ENSGT00940000158106	ENSGT00940000153313.B	ENSGT01070000253816.a.a.b	ENSGT00940000154512.a	ENSGT00390000013820	ENSGT00940000159907	ENSGT00390000006788.a.b	ENSGT00390000005130	ENSGT00390000000693	ENSGT00390000014262	ENSGT00940000162467.b	ENSGT00940000159144.B.fb.b
Canidae	ANCESTRAL SPECIES	38	ENSGT00940000157767	ENSGT00900000143582	ENSGT00940000156894	ENSGT00900000143708	ENSGT00900000143309	ENSGT00950000185146.d	ENSGT00940000155454	ENSGT00940000155219	ENSGT00480000042679.b.b	ENSGT00390000013700	ENSGT00940000157039.b	ENSGT00390000013956	ENSGT00940000155175.B	ENSGT00940000155175.A	ENSGT00940000156877	ENSGT00950000183174.B.b ##22	ENSGT00390000011709	ENSGT00390000006601	ENSGT00940000158106	ENSGT00940000153313.B	ENSGT01070000253816.a.a.b	ENSGT00940000154512.a	ENSGT00390000013820	ENSGT00940000159907	ENSGT00390000006788.a.b	ENSGT00390000005130	ENSGT00390000000693	ENSGT00390000014262	ENSGT00940000162467.b	ENSGT00940000159144.B.fb.b	ENSGT00940000163647
Canis_lupus	ANCESTRAL SPECIES	35	ENSGT00940000155487	ENSGT00940000157767	ENSGT00950000185300.c	ENSGT00940000156894	ENSGT00900000143708	ENSGT00900000143309	ENSGT00940000155454	ENSGT00940000155219	ENSGT00480000042679.b.b	ENSGT00390000013700	ENSGT00940000157039.b	ENSGT00390000013956	ENSGT00940000155175.B	ENSGT00940000155175.A	ENSGT00940000156877	ENSGT00950000183174.B.b ##22	ENSGT00390000011709	ENSGT00390000006601	ENSGT00940000154205.h.wc.b	ENSGT00940000158106	ENSGT00940000153313.B	ENSGT01070000253816.a.a.b	ENSGT00940000154512.a	ENSGT00390000013820	ENSGT00940000159907	ENSGT00390000006788.a.b	ENSGT00390000005130	ENSGT00390000000693	ENSGT00390000014262	ENSGT00940000162467.b	ENSGT00940000159144.B.fb.b
Dingo	DUPLICATION
Dingo	MODERN SPECIES	7	ENSCAFG00020018107	PCDH17 (ENSCAFG00020018109)	ENSCAFG00020018112	ENSCAFG00020018121	OLFM4 (ENSCAFG00020018137)	PCDH8 (ENSCAFG00020018138)	CNMD (ENSCAFG00020018141)	SUGT1 (ENSCAFG00020018144)	ELF1 (ENSCAFG00020018152)	WBP4 (ENSCAFG00020018156)	KBTBD6 (ENSCAFG00020018170)	KBTBD7 (ENSCAFG00020018174)	ENSCAFG00020018176	MTRF1 (ENSCAFG00020018178)	ENSCAFG00020018183 ##22	ENSCAFG00020018184 ##22	RGCC (ENSCAFG00020018187)	VWA8 (ENSCAFG00020018227)	ENSCAFG00020018598	DGKH (ENSCAFG00020018605)	AKAP11 (ENSCAFG00020018682)	TNFSF11 (ENSCAFG00020018702)	FAM216B (ENSCAFG00020018715)	ENSCAFG00020018717	DNAJC15 (ENSCAFG00020018719)	ENOX1 (ENSCAFG00020018723)	CCDC122 (ENSCAFG00020018762)	LACC1 (ENSCAFG00020018765)	SERP2 (ENSCAFG00020018773)	ENSCAFG00020018774	TSC22D1 (ENSCAFG00020018776)
Dingo	MODERN SPECIES	7	ENSCAFG00020018106	ENSCAFG00020018107	PCDH17 (ENSCAFG00020018109)	ENSCAFG00020018112	ENSCAFG00020018121	OLFM4 (ENSCAFG00020018137)	PCDH8 (ENSCAFG00020018138)	CNMD (ENSCAFG00020018141)	SUGT1 (ENSCAFG00020018144)	ELF1 (ENSCAFG00020018152)	WBP4 (ENSCAFG00020018156)	KBTBD6 (ENSCAFG00020018170)	KBTBD7 (ENSCAFG00020018174)	ENSCAFG00020018176	MTRF1 (ENSCAFG00020018178)	ENSCAFG00020018183 ##22	ENSCAFG00020018184 ##22	RGCC (ENSCAFG00020018187)	VWA8 (ENSCAFG00020018227)	ENSCAFG00020018598	DGKH (ENSCAFG00020018605)	AKAP11 (ENSCAFG00020018682)	TNFSF11 (ENSCAFG00020018702)	FAM216B (ENSCAFG00020018715)	ENSCAFG00020018717	DNAJC15 (ENSCAFG00020018719)	ENOX1 (ENSCAFG00020018723)	CCDC122 (ENSCAFG00020018762)	LACC1 (ENSCAFG00020018765)	SERP2 (ENSCAFG00020018773)	ENSCAFG00020018774
Dog	MODERN SPECIES	14	ENSCAFG00845019341	ENSCAFG00845019184	PCDH17 (ENSCAFG00845019099)	ENSCAFG00845019030	ENSCAFG00845013231	ENSCAFG00845013167	OLFM4 (ENSCAFG00845013112)	ENSCAFG00845013086	ENSCAFG00845013032	ENSCAFG00845013012	ELF1 (ENSCAFG00845012922)	WBP4 (ENSCAFG00845012821)	KBTBD6 (ENSCAFG00845012777)	ENSCAFG00845012746	MTRF1 (ENSCAFG00845012616)	NAA16 (ENSCAFG00845012159) ##22	RGCC (ENSCAFG00845012012)	VWA8 (ENSCAFG00845011611)	ENSCAFG00845011514	DGKH (ENSCAFG00845010984)	AKAP11 (ENSCAFG00845010732)	TNFSF11 (ENSCAFG00845010618)	FAM216B (ENSCAFG00845010557)	ENSCAFG00845010306	DNAJC15 (ENSCAFG00845010203)	ENOX1 (ENSCAFG00845010105)	CCDC122 (ENSCAFG00845010070)	LACC1 (ENSCAFG00845010010)	SMIM2 (ENSCAFG00845009884)	SERP2 (ENSCAFG00845009825)	TSC22D1 (ENSCAFG00845009733)
Red fox	MODERN SPECIES	78	ENSVVUG00000028807	ENSVVUG00000028805	ENSVVUG00000028804	ENSVVUG00000028792	ENSVVUG00000028790	OLFM4 (ENSVVUG00000028777)	PCDH8 (ENSVVUG00000028776)	CNMD (ENSVVUG00000028772)	SUGT1 (ENSVVUG00000028767)	ELF1 (ENSVVUG00000028763)	WBP4 (ENSVVUG00000028761)	KBTBD6 (ENSVVUG00000028760)	ENSVVUG00000028758	ENSVVUG00000028757	MTRF1 (ENSVVUG00000028755)	NAA16 (ENSVVUG00000028743) ##22	ENSVVUG00000028742	VWA8 (ENSVVUG00000028708)	DGKH (ENSVVUG00000028597)	AKAP11 (ENSVVUG00000028556)	TNFSF11 (ENSVVUG00000028544)	FAM216B (ENSVVUG00000028542)	ENSVVUG00000028538	ENSVVUG00000028527	ENSVVUG00000028523	ENOX1 (ENSVVUG00000028503)
Caniformia_b	ANCESTRAL SPECIES	26	ENSGT00940000155079.b	ENSGT00940000156743	ENSGT00940000155487	ENSGT00940000157767	ENSGT00940000156894	ENSGT00950000185146.d	ENSGT00940000155454.j	ENSGT00940000155219	ENSGT00480000042679.b.b	ENSGT00390000013700	ENSGT00940000157039.b	ENSGT00390000013956	ENSGT00940000155175.B	ENSGT00940000155175.A	ENSGT00940000156877	ENSGT00950000183174.B.b ##22	ENSGT00550000076230	ENSGT00390000011709	ENSGT00390000006601	ENSGT00940000158106	ENSGT00940000153313.B	ENSGT01070000253816.a.a.b	ENSGT00940000154512.a	ENSGT00390000013820	ENSGT00940000159907	ENSGT00390000006788.a.b	ENSGT00390000005130	ENSGT00390000000693	ENSGT00940000162467.b	ENSGT00940000159144.B.fb.b	ENSGT00940000163647
Mustelinae	ANCESTRAL SPECIES	71	ENSGT00940000156743	ENSGT00940000155487	ENSGT00940000157767	ENSGT00900000143582	ENSGT00940000156894	ENSGT00950000185146.d	ENSGT00940000155454.j	ENSGT00940000155219	ENSGT00480000042679.b.b	ENSGT00390000013700	ENSGT00940000157039.b	ENSGT00390000013956	ENSGT00940000155175.B	ENSGT00940000155175.A	ENSGT00940000156877	ENSGT00950000183174.B.b ##22	ENSGT00550000076230	ENSGT00390000011709	ENSGT00390000006601	ENSGT00940000158106	ENSGT00940000153313.B	ENSGT01070000253816.a.a.b	ENSGT00940000154512.a	ENSGT00390000013820	ENSGT00940000159907	ENSGT00390000006788.a.b	ENSGT00390000005130	ENSGT00390000000693	ENSGT00940000162467.b	ENSGT00940000159144.B.fb.b	ENSGT00940000163647
American mink	MODERN SPECIES	193								CNMD (ENSNVIG00000001796)	SUGT1 (ENSNVIG00000001753)	ELF1 (ENSNVIG00000001703)	WBP4 (ENSNVIG00000001685)	KBTBD6 (ENSNVIG00000001665)	KBTBD7 (ENSNVIG00000001658)	RF1M (ENSNVIG00000001641)	ENSNVIG00000001628	NAA16 (ENSNVIG00000001540) ##22	RGCC (ENSNVIG00000001512)	VWA8 (ENSNVIG00000001438)	DGKH (ENSNVIG00000001217)	AKAP11 (ENSNVIG00000001185)	TNFSF11 (ENSNVIG00000001142)	FAM216B (ENSNVIG00000001108)	EPSTI1 (ENSNVIG00000001071)	DNAJC15 (ENSNVIG00000001037)	ENOX1 (ENSNVIG00000001013)	CCDC122 (ENSNVIG00000001005)	LACC1 (ENSNVIG00000000984)	SERP2 (ENSNVIG00000000979)	TSC22D1 (ENSNVIG00000000959)	NUFIP1 (ENSNVIG00000000949)	K1704 (ENSNVIG00000000905)
Ferret	MODERN SPECIES	232			ENSMPUG00000001921	ENSMPUG00000001911	OLFM4 (ENSMPUG00000001907)	ENSMPUG00000001900	ENSMPUG00000001897	PCDH8 (ENSMPUG00000001889)	CNMD (ENSMPUG00000001886)	SUGT1 (ENSMPUG00000001883)	ELF1 (ENSMPUG00000001881)	WBP4 (ENSMPUG00000001879)	KBTBD6 (ENSMPUG00000019416)	KBTBD7 (ENSMPUG00000001878)	MTRF1 (ENSMPUG00000001874)	NAA16 (ENSMPUG00000001871) ##22	RGCC (ENSMPUG00000001865)	VWA8 (ENSMPUG00000001847)	ENSMPUG00000001845	DGKH (ENSMPUG00000001760)	AKAP11 (ENSMPUG00000001756)	ENSMPUG00000001755	TNFSF11 (ENSMPUG00000001717)	FAM216B (ENSMPUG00000001713)	EPSTI1 (ENSMPUG00000001709)	DNAJC15 (ENSMPUG00000001704)	ENOX1 (ENSMPUG00000001695)	CCDC122 (ENSMPUG00000001686)	LACC1 (ENSMPUG00000001681)	SERP2 (ENSMPUG00000001672)	ENSMPUG00000001671
Ursidae	ANCESTRAL SPECIES	27	ENSGT00940000155079.b	ENSGT00940000156743	ENSGT00940000155487	ENSGT00940000157767	ENSGT00940000156894	ENSGT00950000185146.d	ENSGT00940000155454.j	ENSGT00940000155219	ENSGT00480000042679.b.b	ENSGT00390000013700	ENSGT00940000157039.b	ENSGT00390000013956	ENSGT00940000155175.B	ENSGT00940000155175.A	ENSGT00940000156877	ENSGT00950000183174.B.b ##22	ENSGT00390000011709	ENSGT00390000006601	ENSGT00940000158106	ENSGT00940000153313.B	ENSGT01070000253816.a.a.b	ENSGT00940000154512.a	ENSGT00390000013820	ENSGT00940000159907	ENSGT00390000006788.a.b	ENSGT00390000005130	ENSGT00390000000693	ENSGT00940000162467.b	ENSGT00940000159144.B.fb.b	ENSGT00940000163647	ENSGT00940000159144.B.gb
Giant Panda	MODERN SPECIES	17	PCDH20 (ENSAMEG00000000079)	ENSAMEG00000000080	TDRD3 (ENSAMEG00000000082)	DIAPH3 (ENSAMEG00000000086)	PCDH17 (ENSAMEG00000018131)	ENSAMEG00000025942	ENSAMEG00000008583	PCDH8 (ENSAMEG00000029609)	ENSAMEG00000008596	ENSAMEG00000008606	ENSAMEG00000008636	WBP4 (ENSAMEG00000008668)	KBTBD6 (ENSAMEG00000018925)	KBTBD7 (ENSAMEG00000018934)	MTRF1 (ENSAMEG00000008696)	NAA16 (ENSAMEG00000008721) ##22	RGCC (ENSAMEG00000023477)	VWA8 (ENSAMEG00000008732)	DGKH (ENSAMEG00000008800)	AKAP11 (ENSAMEG00000008857)	ENSAMEG00000023893	FAM216B (ENSAMEG00000024062)	EPSTI1 (ENSAMEG00000016302)	DNAJC15 (ENSAMEG00000027146)	ENOX1 (ENSAMEG00000017297)	CCDC122 (ENSAMEG00000012979)	LACC1 (ENSAMEG00000012983)	SERP2 (ENSAMEG00000026998)	TSC22D1 (ENSAMEG00000012987)	NUFIP1 (ENSAMEG00000012993)	ENSAMEG00000013001
Ursus	ANCESTRAL SPECIES	62		ENSGT00940000155079.b	ENSGT00940000156743	ENSGT00940000155487	ENSGT00940000157767	ENSGT00940000156894	ENSGT00940000155454.j	ENSGT00940000155219	ENSGT00480000042679.b.b	ENSGT00390000013700	ENSGT00940000157039.b	ENSGT00390000013956	ENSGT00940000155175.B	ENSGT00940000155175.A	ENSGT00940000156877	ENSGT00950000183174.B.b ##22	ENSGT00390000011709	ENSGT00390000006601	ENSGT00940000158106	ENSGT00940000153313.B	ENSGT01070000253816.a.a.b	ENSGT00940000154512.a	ENSGT00390000013820	ENSGT00940000159907	ENSGT00390000006788.a.b	ENSGT00390000005130	ENSGT00390000000693	ENSGT00940000163647	ENSGT00940000159144.B.gb	ENSGT00390000003758	ENSGT00390000012569.b
Polar bear	MODERN SPECIES	297	ENSUMAG00000014463	ENSUMAG00000014473	PCDH20 (ENSUMAG00000014497)	TDRD3 (ENSUMAG00000014526)	DIAPH3 (ENSUMAG00000014591)	PCDH17 (ENSUMAG00000014678)	OLFM4 (ENSUMAG00000014718)	ENSUMAG00000014724	CNMD (ENSUMAG00000014733)	SUGT1 (ENSUMAG00000014735)	ELF1 (ENSUMAG00000014744)	WBP4 (ENSUMAG00000014750)	KBTBD6 (ENSUMAG00000014753)	KBTBD7 (ENSUMAG00000014764)	MTRF1 (ENSUMAG00000014772)	NAA16 (ENSUMAG00000014778) ##22	ENSUMAG00000014782	VWA8 (ENSUMAG00000014915)	DGKH (ENSUMAG00000015512)	AKAP11 (ENSUMAG00000015963)	TNFSF11 (ENSUMAG00000015977)	FAM216B (ENSUMAG00000015984)	EPSTI1 (ENSUMAG00000016009)	ENSUMAG00000016020	DNAJC15 (ENSUMAG00000016026)	ENOX1 (ENSUMAG00000016041)	CCDC122 (ENSUMAG00000016081)	LACC1 (ENSUMAG00000016088)	ENSUMAG00000016116	TSC22D1 (ENSUMAG00000016120)	NUFIP1 (ENSUMAG00000016131)
American black bear	DUPLICATION
American black bear	MODERN SPECIES	1856															ENSUAMG00000023991	ENSUAMG00000023990 ##22
American black bear	MODERN SPECIES	1855																ENSUAMG00000023989 ##22	RGCC (ENSUAMG00000023988)
Laurasiatheria_c	ANCESTRAL SPECIES	22	ENSGT00940000156743	ENSGT00940000155487	ENSGT00940000157767	ENSGT00940000156894	ENSGT00900000143708	ENSGT00940000155454	ENSGT00940000155219	ENSGT00480000042679.b.b	ENSGT00390000013700	ENSGT00950000186331	ENSGT00940000157039.b	ENSGT00390000013956	ENSGT00940000155175.B	ENSGT00940000155175.A	ENSGT00940000156877	ENSGT00950000183174.B.b ##22	ENSGT00390000011709	ENSGT00390000006601	ENSGT00940000158106	ENSGT00940000153313.B	ENSGT01070000253816.a.a.b	ENSGT00940000154512.a	ENSGT00390000013820	ENSGT00940000159907	ENSGT00390000006788.a.b	ENSGT00390000005130	ENSGT00390000000693	ENSGT00390000014262	ENSGT00940000162467.b	ENSGT00940000163647	ENSGT00940000159144.B
Equus	ANCESTRAL SPECIES	26	ENSGT00940000156743	ENSGT00940000155487	ENSGT00940000157767	ENSGT00940000156894	ENSGT00900000143708	ENSGT00940000155454	ENSGT00940000155219	ENSGT00480000042679.b.b	ENSGT00390000013700	ENSGT00950000186331	ENSGT00940000157039.b	ENSGT00390000013956	ENSGT00940000155175.B	ENSGT00940000155175.A	ENSGT00940000156877	ENSGT00950000183174.B.b ##22	ENSGT00390000011709	ENSGT00390000006601	ENSGT00940000158106	ENSGT00940000153313.B	ENSGT01070000253816.a.a.b	ENSGT00940000154512.a	ENSGT00390000013820	ENSGT00940000159907	ENSGT00390000006788.a.b	ENSGT00390000005130	ENSGT00390000000693	ENSGT00390000014262	ENSGT00940000162467.b	ENSGT00940000163647	ENSGT00940000159144.B
Donkey	DUPLICATION
Donkey	MODERN SPECIES	2	PCDH20 (ENSEASG00005028627)	TDRD3 (ENSEASG00005015575)	DIAPH3 (ENSEASG00005015584)	PCDH17 (ENSEASG00005015677)	ENSEASG00005037270	OLFM4 (ENSEASG00005034164)	PCDH8 (ENSEASG00005015694)	CNMD (ENSEASG00005015700)	ENSEASG00005015702	ENSEASG00005015703	ENSEASG00005015706	KBTBD6 (ENSEASG00005036527)	KBTBD7 (ENSEASG00005015712)	MTRF1 (ENSEASG00005015715)	ENSEASG00005015756 ##22	ENSEASG00005035563 ##22	RGCC (ENSEASG00005035316)	VWA8 (ENSEASG00005016214)	DGKH (ENSEASG00005016872)	AKAP11 (ENSEASG00005016987)	TNFSF11 (ENSEASG00005025411)	FAM216B (ENSEASG00005016998)	EPSTI1 (ENSEASG00005017003)	ENSEASG00005033429	DNAJC15 (ENSEASG00005027017)	ENOX1 (ENSEASG00005017017)	ENSEASG00005017023	LACC1 (ENSEASG00005017025)	SMIM2 (ENSEASG00005030223)	SERP2 (ENSEASG00005017029)	ENSEASG00005031806
Donkey	MODERN SPECIES	2	ENSEASG00005015571	PCDH20 (ENSEASG00005028627)	TDRD3 (ENSEASG00005015575)	DIAPH3 (ENSEASG00005015584)	PCDH17 (ENSEASG00005015677)	ENSEASG00005037270	OLFM4 (ENSEASG00005034164)	PCDH8 (ENSEASG00005015694)	CNMD (ENSEASG00005015700)	ENSEASG00005015702	ENSEASG00005015703	ENSEASG00005015706	KBTBD6 (ENSEASG00005036527)	KBTBD7 (ENSEASG00005015712)	MTRF1 (ENSEASG00005015715)	ENSEASG00005015756 ##22	ENSEASG00005035563 ##22	RGCC (ENSEASG00005035316)	VWA8 (ENSEASG00005016214)	DGKH (ENSEASG00005016872)	AKAP11 (ENSEASG00005016987)	TNFSF11 (ENSEASG00005025411)	FAM216B (ENSEASG00005016998)	EPSTI1 (ENSEASG00005017003)	ENSEASG00005033429	DNAJC15 (ENSEASG00005027017)	ENOX1 (ENSEASG00005017017)	ENSEASG00005017023	LACC1 (ENSEASG00005017025)	SMIM2 (ENSEASG00005030223)	SERP2 (ENSEASG00005017029)
Horse	MODERN SPECIES	8	ENSECAG00000036793	ENSECAG00000053922	ENSECAG00000014035	ENSECAG00000028608	OLFM4 (ENSECAG00000010860)	PCDH8 (ENSECAG00000024090)	ENSECAG00000034043	SUGT1 (ENSECAG00000012999)	CNMD (ENSECAG00000019524)	ELF1 (ENSECAG00000024604)	WBP4 (ENSECAG00000021033)	KBTBD6 (ENSECAG00000001410)	ENSECAG00000045437	KBTBD7 (ENSECAG00000001308)	MTRF1 (ENSECAG00000014389)	NAA16 (ENSECAG00000015497) ##22	RGCC (ENSECAG00000013151)	ENSECAG00000050128	ENSECAG00000045148	VWA8 (ENSECAG00000006748)	DGKH (ENSECAG00000000237)	AKAP11 (ENSECAG00000021005)	TNFSF11 (ENSECAG00000016559)	FAM216B (ENSECAG00000015189)	ENSECAG00000050320	ENSECAG00000033495	EPSTI1 (ENSECAG00000009543)	DNAJC15 (ENSECAG00000007757)	ENOX1 (ENSECAG00000023538)	CCDC122 (ENSECAG00000020440)	LACC1 (ENSECAG00000018885)
Chiroptera	ANCESTRAL SPECIES	39	ENSGT00940000155079.b	ENSGT00940000156743	ENSGT00940000155487	ENSGT00940000157767	ENSGT00900000143708	ENSGT00940000156894	ENSGT00940000155454	ENSGT00940000155219	ENSGT00480000042679.b.b	ENSGT00390000013700	ENSGT00940000157039.b	ENSGT00390000013956	ENSGT00940000155175.B	ENSGT00940000155175.A	ENSGT00940000156877	ENSGT00950000183174.B.b ##22	ENSGT00390000011709	ENSGT00390000006601	ENSGT00940000158106	ENSGT00940000153313.B	ENSGT01070000253816.a.a.b	ENSGT00940000154512.a	ENSGT00390000013820	ENSGT00940000159907	ENSGT00390000006788.a.b	ENSGT00390000005130	ENSGT00390000000693	ENSGT00390000014262	ENSGT00940000162467.b	ENSGT00940000159144.B	ENSGT00390000003758
Microchiroptera	ANCESTRAL SPECIES	40	ENSGT00940000155079.b	ENSGT00940000156743	ENSGT00940000155487	ENSGT00940000157767	ENSGT00900000143708	ENSGT00940000156894	ENSGT00940000155454	ENSGT00940000155219	ENSGT00480000042679.b.b	ENSGT00390000013700	ENSGT00940000157039.b	ENSGT00390000013956	ENSGT00940000155175.B	ENSGT00940000155175.A	ENSGT00940000156877	ENSGT00950000183174.B.b ##22	ENSGT00390000011709	ENSGT00390000006601	ENSGT00940000158106	ENSGT00940000153313.B	ENSGT01070000253816.a.a.b	ENSGT00940000154512.a	ENSGT00390000013820	ENSGT00940000159907	ENSGT00390000006788.a.b	ENSGT00390000005130	ENSGT00390000000693	ENSGT00390000014262	ENSGT00940000162467.b	ENSGT00940000159144.B	ENSGT00390000003758
Greater horseshoe bat	MODERN SPECIES	22	TDRD3 (ENSRFEG00010001175)	DIAPH3 (ENSRFEG00010000605)	ENSRFEG00010000334	PCDH17 (ENSRFEG00010000323)	ENSRFEG00010000303	OLFM4 (ENSRFEG00010000281)	PCDH8 (ENSRFEG00010000264)	CNMD (ENSRFEG00010000232)	SUGT1 (ENSRFEG00010000205)	ELF1 (ENSRFEG00010000181)	WBP4 (ENSRFEG00010018932)	KBTBD6 (ENSRFEG00010018916)	ENSRFEG00010018883	KBTBD7 (ENSRFEG00010018870)	MTRF1 (ENSRFEG00010018838)	NAA16 (ENSRFEG00010018490) ##22	RGCC (ENSRFEG00010018401)	VWA8 (ENSRFEG00010017755)	DGKH (ENSRFEG00010016960)	AKAP11 (ENSRFEG00010016903)	TNFSF11 (ENSRFEG00010016778)	FAM216B (ENSRFEG00010016757)	EPSTI1 (ENSRFEG00010016685)	DNAJC15 (ENSRFEG00010016645)	ENOX1 (ENSRFEG00010016570)	CCDC122 (ENSRFEG00010016478)	LACC1 (ENSRFEG00010016430)	SMIM2 (ENSRFEG00010016302)	ENSRFEG00010016228	TSC22D1 (ENSRFEG00010016081)	ENSRFEG00010016066
Microbat	MODERN SPECIES	944							OLFM4 (ENSMLUG00000013957)	PCDH8 (ENSMLUG00000005370)	CNMD (ENSMLUG00000017234)	SUGT1 (ENSMLUG00000017229)	ELF1 (ENSMLUG00000001854)	WBP4 (ENSMLUG00000001855)	KBTBD6 (ENSMLUG00000017068)	KBTBD7 (ENSMLUG00000029916)	MTRF1 (ENSMLUG00000017237)	NAA16 (ENSMLUG00000004194) ##22	ENSMLUG00000009482	RGCC (ENSMLUG00000000695)	VWA8 (ENSMLUG00000015361)	DGKH (ENSMLUG00000016820)	AKAP11 (ENSMLUG00000026426)	TNFSF11 (ENSMLUG00000008819)	FAM216B (ENSMLUG00000012282)	ENSMLUG00000015553	DNAJC15 (ENSMLUG00000008684)	ENOX1 (ENSMLUG00000000802)	CCDC122 (ENSMLUG00000009121)	LACC1 (ENSMLUG00000003112)	ENSMLUG00000027027	ENSMLUG00000011786	ENSMLUG00000003971
Megabat	MODERN SPECIES	221															MTRF1 (ENSPVAG00000008573)	NAA16 (ENSPVAG00000008575) ##22
Artiodactyla	ANCESTRAL SPECIES	21	ENSGT00940000157767	ENSGT00900000143708	ENSGT00900000143582	ENSGT00940000156894	ENSGT00900000143309	ENSGT00940000155454	ENSGT00940000155219	ENSGT00480000042679.b.b	ENSGT00390000013700	ENSGT00950000186331	ENSGT00940000157039.b	ENSGT00390000013956	ENSGT00940000155175.B	ENSGT00940000155175.A	ENSGT00940000156877	ENSGT00950000183174.B.b ##22	ENSGT00550000076230	ENSGT00390000011709	ENSGT00390000006601	ENSGT00940000164406	ENSGT00940000158106	ENSGT00940000153313.B	ENSGT01070000253816.a.a.b	ENSGT00940000154512.a	ENSGT00390000013820	ENSGT00940000159907	ENSGT00390000006788.a.b	ENSGT00390000005130	ENSGT00390000000693	ENSGT00390000014262	ENSGT00940000162467.b
Artiodactyla_a	ANCESTRAL SPECIES	22	ENSGT00940000157767	ENSGT00900000143708	ENSGT00900000143582	ENSGT00940000156894	ENSGT00900000143309	ENSGT00940000155454	ENSGT00940000155219	ENSGT00480000042679.b.b	ENSGT00390000013700	ENSGT00950000186331	ENSGT00940000157039.b	ENSGT00390000013956	ENSGT00940000155175.B	ENSGT00940000155175.A	ENSGT00940000156877	ENSGT00950000183174.B.b ##22	ENSGT00550000076230	ENSGT00390000011709	ENSGT00390000006601	ENSGT00940000164406	ENSGT00940000158106	ENSGT00940000153313.B	ENSGT01070000253816.a.a.b	ENSGT00940000154512.a	ENSGT00390000013820	ENSGT00940000159907	ENSGT00390000006788.a.b	ENSGT00390000005130	ENSGT00390000000693	ENSGT00390000014262	ENSGT00940000162467.b
Camelidae	ANCESTRAL SPECIES	14	ENSGT00940000155487	ENSGT00940000157767	ENSGT00940000156894	ENSGT00900000143309	ENSGT00940000155454	ENSGT00940000155219	ENSGT00480000042679.b.b	ENSGT00390000013700	ENSGT00950000186331	ENSGT00940000166099	ENSGT00940000157039.b	ENSGT00390000013956	ENSGT00940000155175.B	ENSGT00940000155175.A	ENSGT00940000156877	ENSGT00950000183174.B.b ##22	ENSGT00390000011709	ENSGT00390000006601	ENSGT00940000158106	ENSGT00940000153313.B	ENSGT01070000253816.a.a.b	ENSGT00940000154512.a	ENSGT00390000013820	ENSGT00940000159907	ENSGT00390000006788.a.b	ENSGT00390000005130	ENSGT00390000000693	ENSGT00940000162467.b	ENSGT00940000159144.B	ENSGT00390000003758	ENSGT00390000012569.b
Arabian camel	MODERN SPECIES	5	TDRD3 (ENSCDRG00005017152)	DIAPH3 (ENSCDRG00005012389)	PCDH17 (ENSCDRG00005012113)	ENSCDRG00005012059	ENSCDRG00005012013	OLFM4 (ENSCDRG00005011913)	PCDH8 (ENSCDRG00005011868)	CNMD (ENSCDRG00005011783)	SUGT1 (ENSCDRG00005011660)	ENSCDRG00005011625	ELF1 (ENSCDRG00005011557)	WBP4 (ENSCDRG00005011462)	KBTBD6 (ENSCDRG00005011423)	KBTBD7 (ENSCDRG00005011400)	MTRF1 (ENSCDRG00005011325)	NAA16 (ENSCDRG00005010901) ##22	RGCC (ENSCDRG00005010786)	VWA8 (ENSCDRG00005010578)	DGKH (ENSCDRG00005009915)	AKAP11 (ENSCDRG00005009691)	TNFSF11 (ENSCDRG00005009599)	FAM216B (ENSCDRG00005009565)	EPSTI1 (ENSCDRG00005009378)	DNAJC15 (ENSCDRG00005009304)	ENOX1 (ENSCDRG00005009033)	CCDC122 (ENSCDRG00005008954)	LACC1 (ENSCDRG00005008895)	ENSCDRG00005008695	TSC22D1 (ENSCDRG00005008565)	NUFIP1 (ENSCDRG00005008479)	ENSCDRG00005008379
Alpaca	MODERN SPECIES	104														KBTBD7 (ENSVPAG00000002563)	MTRF1 (ENSVPAG00000002565)	NAA16 (ENSVPAG00000002566) ##22	RGCC (ENSVPAG00000002567)	VWA8 (ENSVPAG00000002568)
Artiodactyla_b	ANCESTRAL SPECIES	22	ENSGT00940000155487	ENSGT00940000157767	ENSGT00900000143708	ENSGT00900000143582	ENSGT00940000156894	ENSGT00940000155454	ENSGT00940000155219	ENSGT00480000042679.b.b	ENSGT00390000013700	ENSGT00950000186331	ENSGT00940000157039.b	ENSGT00390000013956	ENSGT00940000155175.B	ENSGT00940000155175.A	ENSGT00940000156877	ENSGT00950000183174.B.b ##22	ENSGT00550000076230	ENSGT00390000011709	ENSGT00390000006601	ENSGT00940000164406	ENSGT00940000158106	ENSGT00940000153313.B	ENSGT01070000253816.a.a.b	ENSGT00940000154512.a	ENSGT00390000013820	ENSGT00940000159907	ENSGT00390000006788.a.b	ENSGT00390000005130	ENSGT00390000000693	ENSGT00390000014262	ENSGT00940000162467.b
Cetacea	ANCESTRAL SPECIES	20	ENSGT01030000238532	ENSGT00940000155487	ENSGT00940000157767	ENSGT00900000143708	ENSGT00940000156894	ENSGT00940000155454	ENSGT00940000155219	ENSGT00480000042679.b.b	ENSGT00390000013700	ENSGT00950000186331	ENSGT00940000157039.b	ENSGT00390000013956	ENSGT00940000155175.B	ENSGT00940000155175.A	ENSGT00940000156877	ENSGT00950000183174.B.b ##22	ENSGT00390000011709	ENSGT00390000006601	ENSGT00940000158106	ENSGT00940000153313.B	ENSGT01070000253816.a.a.b	ENSGT00940000154512.a	ENSGT00390000013820	ENSGT00940000159907	ENSGT00390000006788.a.b	ENSGT00390000005130	ENSGT00390000000693	ENSGT00390000014262	ENSGT00940000162467.b	ENSGT00940000159144.B	ENSGT00390000003758
Odontoceti	ANCESTRAL SPECIES	21	ENSGT00940000157767	ENSGT00900000143708	ENSGT00390000001374.a	ENSGT00390000011725.d.d	ENSGT00940000156894	ENSGT00940000155454	ENSGT00940000155219	ENSGT00480000042679.b.b	ENSGT00390000013700	ENSGT00950000186331	ENSGT00940000157039.b	ENSGT00390000013956	ENSGT00940000155175.B	ENSGT00940000155175.A	ENSGT00940000156877	ENSGT00950000183174.B.b ##22	ENSGT00390000011709	ENSGT00390000006601	ENSGT00940000158106	ENSGT00940000153313.B	ENSGT01070000253816.a.a.b	ENSGT00940000154512.a	ENSGT00390000013820	ENSGT00940000159907	ENSGT00390000006788.a.b	ENSGT00390000005130	ENSGT00390000000693	ENSGT00940000162467.b	ENSGT00940000159144.B	ENSGT00390000003758	ENSGT00390000012569.b
Odontoceti_a	ANCESTRAL SPECIES	24	ENSGT00940000157767	ENSGT00390000001374.a	ENSGT00390000011725.d.d	ENSGT00900000143708	ENSGT00940000156894	ENSGT00940000155454	ENSGT00940000155219	ENSGT00480000042679.b.b	ENSGT00390000013700	ENSGT00950000186331	ENSGT00940000157039.b	ENSGT00390000013956	ENSGT00940000155175.B	ENSGT00940000155175.A	ENSGT00940000156877	ENSGT00950000183174.B.b ##22	ENSGT00390000011709	ENSGT00390000006601	ENSGT00940000158106	ENSGT00940000153313.B	ENSGT01070000253816.a.a.b	ENSGT00940000154512.a	ENSGT00390000013820	ENSGT00940000159907	ENSGT00390000006788.a.b	ENSGT00390000005130	ENSGT00390000000693	ENSGT00940000162467.b	ENSGT00940000159144.B	ENSGT00390000003758	ENSGT00390000012569.b
Odontoceti_b	ANCESTRAL SPECIES	21	ENSGT00940000157767	ENSGT00900000143708	ENSGT00390000001374.a	ENSGT00390000011725.d.d	ENSGT00940000156894	ENSGT00940000155454	ENSGT00940000155219	ENSGT00480000042679.b.b	ENSGT00390000013700	ENSGT00950000186331	ENSGT00940000157039.b	ENSGT00390000013956	ENSGT00940000155175.B	ENSGT00940000155175.A	ENSGT00940000156877	ENSGT00950000183174.B.b ##22	ENSGT00390000011709	ENSGT00390000006601	ENSGT00940000158106	ENSGT00940000153313.B	ENSGT01070000253816.a.a.b	ENSGT00940000154512.a	ENSGT00390000013820	ENSGT00940000159907	ENSGT00390000006788.a.b	ENSGT00390000005130	ENSGT00390000000693	ENSGT00940000162467.b	ENSGT00940000159144.B	ENSGT00940000154185.g.a	ENSGT00390000003758
Monodontidae	ANCESTRAL SPECIES	15	ENSGT00390000012818.o.a.a.a.a.d	ENSGT00940000155487	ENSGT00940000157767	ENSGT00900000143708	ENSGT00940000156894	ENSGT00940000155454	ENSGT00940000155219	ENSGT00480000042679.b.b	ENSGT00390000013700	ENSGT00950000186331	ENSGT00940000157039.b	ENSGT00390000013956	ENSGT00940000155175.B	ENSGT00940000155175.A	ENSGT00940000156877	ENSGT00950000183174.B.b ##22	ENSGT00390000011709	ENSGT00390000006601	ENSGT00940000158106	ENSGT00940000153313.B	ENSGT01070000253816.a.a.b	ENSGT00940000154512.a	ENSGT00390000013820	ENSGT00940000159907	ENSGT00390000000378.d.b.fb.b.b	ENSGT00390000006788.a.b	ENSGT00390000005130	ENSGT00390000000693	ENSGT00940000162467.b	ENSGT00940000159144.B	ENSGT00940000154185.g.a
Narwhal	MODERN SPECIES	315	DIAPH3 (ENSMMNG00015020329)	ENSMMNG00015020730	PCDH17 (ENSMMNG00015020740)	ENSMMNG00015020794	ENSMMNG00015020809	OLFM4 (ENSMMNG00015020840)	PCDH8 (ENSMMNG00015020876)	CNMD (ENSMMNG00015020893)	SUGT1 (ENSMMNG00015020917)	ENSMMNG00015020940	ELF1 (ENSMMNG00015020957)	WBP4 (ENSMMNG00015020981)	ENSMMNG00015021006	KBTBD7 (ENSMMNG00015021016)	MTRF1 (ENSMMNG00015021028)	NAA16 (ENSMMNG00015021061) ##22	RGCC (ENSMMNG00015021108)	VWA8 (ENSMMNG00015021128)	DGKH (ENSMMNG00015021180)	AKAP11 (ENSMMNG00015021253)	TNFSF11 (ENSMMNG00015014578)	FAM216B (ENSMMNG00015014608)	EPSTI1 (ENSMMNG00015014629)	ENSMMNG00015014636	ENSMMNG00015014643	ENOX1 (ENSMMNG00015014653)	CCDC122 (ENSMMNG00015014672)	LACC1 (ENSMMNG00015014682)	SERP2 (ENSMMNG00015014783)	TSC22D1 (ENSMMNG00015014797)	NUFIP1 (ENSMMNG00015014826)
Beluga whale	MODERN SPECIES	29	PCDH20 (ENSDLEG00000007543)	ENSDLEG00000007533	ENSDLEG00000007520	TDRD3 (ENSDLEG00000007511)	DIAPH3 (ENSDLEG00000007477)	ENSDLEG00000007455	PCDH17 (ENSDLEG00000007450)	OLFM4 (ENSDLEG00000007414)	PCDH8 (ENSDLEG00000007409)	CNMD (ENSDLEG00000007399)	SUGT1 (ENSDLEG00000007385)	ELF1 (ENSDLEG00000007377)	WBP4 (ENSDLEG00000007369)	KBTBD6 (ENSDLEG00000007365)	KBTBD7 (ENSDLEG00000007360)	NAA16 (ENSDLEG00000007348) ##22	RGCC (ENSDLEG00000007344)	VWA8 (ENSDLEG00000007291)	DGKH (ENSDLEG00000007260)	AKAP11 (ENSDLEG00000007242)	TNFSF11 (ENSDLEG00000007228)	FAM216B (ENSDLEG00000007217)	EPSTI1 (ENSDLEG00000007205)	DNAJC15 (ENSDLEG00000007194)	ENSDLEG00000007189	ENOX1 (ENSDLEG00000007152)	CCDC122 (ENSDLEG00000007128)	LACC1 (ENSDLEG00000007121)	ENSDLEG00000007116	TSC22D1 (ENSDLEG00000007106)	ENSDLEG00000007097
Vaquita	MODERN SPECIES	9	DIAPH3 (ENSPSNG00000018689)	ENSPSNG00000018611	ENSPSNG00000018599	PCDH17 (ENSPSNG00000018511)	ENSPSNG00000018462	ENSPSNG00000018416	OLFM4 (ENSPSNG00000018251)	PCDH8 (ENSPSNG00000018182)	CNMD (ENSPSNG00000018053)	SUGT1 (ENSPSNG00000018012)	ELF1 (ENSPSNG00000017963)	WBP4 (ENSPSNG00000017925)	KBTBD6 (ENSPSNG00000017912)	KBTBD7 (ENSPSNG00000017892)	MTRF1 (ENSPSNG00000017841)	NAA16 (ENSPSNG00000017764) ##22	RGCC (ENSPSNG00000017723)	VWA8 (ENSPSNG00000016031)	DGKH (ENSPSNG00000015456)	AKAP11 (ENSPSNG00000015306)	TNFSF11 (ENSPSNG00000015104)	FAM216B (ENSPSNG00000015047)	EPSTI1 (ENSPSNG00000014964)	DNAJC15 (ENSPSNG00000014922)	ENOX1 (ENSPSNG00000014858)	CCDC122 (ENSPSNG00000014762)	LACC1 (ENSPSNG00000014708)	SERP2 (ENSPSNG00000014487)	TSC22D1 (ENSPSNG00000014372)	ENSPSNG00000014291	NUFIP1 (ENSPSNG00000014196)
Dolphin	MODERN SPECIES	61													WBP4 (ENSTTRG00000010342)	KBTBD7 (ENSTTRG00000010353)	MTRF1 (ENSTTRG00000010370)	NAA16 (ENSTTRG00000010386) ##22
Sperm whale	MODERN SPECIES	4	ENSPCTG00005006098	PCDH17 (ENSPCTG00005006063)	ENSPCTG00005006037	ENSPCTG00005005982	ENSPCTG00005005971	OLFM4 (ENSPCTG00005005928)	PCDH8 (ENSPCTG00005005899)	CNMD (ENSPCTG00005005865)	SUGT1 (ENSPCTG00005005757)	ELF1 (ENSPCTG00005005674)	WBP4 (ENSPCTG00005005625)	KBTBD6 (ENSPCTG00005005604)	ENSPCTG00005005579	KBTBD7 (ENSPCTG00005005568)	MTRF1 (ENSPCTG00005005513)	NAA16 (ENSPCTG00005005364) ##22	RGCC (ENSPCTG00005005316)	VWA8 (ENSPCTG00005005091)	DGKH (ENSPCTG00005004470)	AKAP11 (ENSPCTG00005004282)	TNFSF11 (ENSPCTG00005004229)	ENSPCTG00005004218	FAM216B (ENSPCTG00005004201)	EPSTI1 (ENSPCTG00005004170)	DNAJC15 (ENSPCTG00005004158)	ENOX1 (ENSPCTG00005020727)	CCDC122 (ENSPCTG00005020708)	LACC1 (ENSPCTG00005020691)	SERP2 (ENSPCTG00005020663)	TSC22D1 (ENSPCTG00005020590)	ENSPCTG00005020454
Blue whale	MODERN SPECIES	9	ENSBMSG00010018224	ENSBMSG00010018211	PCDH17 (ENSBMSG00010018148)	ENSBMSG00010018097	ENSBMSG00010018076	OLFM4 (ENSBMSG00010018005)	PCDH8 (ENSBMSG00010017967)	CNMD (ENSBMSG00010017907)	SUGT1 (ENSBMSG00010017890)	ENSBMSG00010017864	ELF1 (ENSBMSG00010017832)	WBP4 (ENSBMSG00010017811)	KBTBD6 (ENSBMSG00010017797)	KBTBD7 (ENSBMSG00010017778)	MTRF1 (ENSBMSG00010017736)	NAA16 (ENSBMSG00010017707) ##22	RGCC (ENSBMSG00010017667)	VWA8 (ENSBMSG00010017626)	DGKH (ENSBMSG00010017429)	AKAP11 (ENSBMSG00010017386)	TNFSF11 (ENSBMSG00010017289)	FAM216B (ENSBMSG00010017267)	EPSTI1 (ENSBMSG00010017177)	ENSBMSG00010017150	ENSBMSG00010017116	ENSBMSG00010017093	ENOX1 (ENSBMSG00010017029)	ENSBMSG00010017009	LACC1 (ENSBMSG00010016991)	SMIM2 (ENSBMSG00010016954)	SERP2 (ENSBMSG00010016922)
Pecora	ANCESTRAL SPECIES	23	ENSGT00940000155487	ENSGT00940000157767	ENSGT00950000185064	ENSGT00900000143582	ENSGT00940000156894	ENSGT00900000143708	ENSGT00940000155454	ENSGT00940000155219	ENSGT00480000042679.b.b	ENSGT00390000013700	ENSGT00940000157039.b	ENSGT00390000013956	ENSGT00940000155175.B	ENSGT00940000155175.A	ENSGT00940000156877	ENSGT00950000183174.B.b ##22	ENSGT00550000076230	ENSGT00390000011709	ENSGT00390000006601	ENSGT00940000164406	ENSGT00940000158106	ENSGT00940000153313.B	ENSGT01070000253816.a.a.b	ENSGT00940000154512.a	ENSGT00390000013820	ENSGT00940000159907	ENSGT00390000006788.a.b	ENSGT00390000005130	ENSGT00390000000693	ENSGT00390000014262	ENSGT00940000162467.b
Yarkand deer	MODERN SPECIES	23	PCDH17 (ENSCHYG00000016204)	ENSCHYG00000016273	ENSCHYG00000016296	ENSCHYG00000016341	ENSCHYG00000016396	OLFM4 (ENSCHYG00000016456)	ENSCHYG00000016497	PCDH8 (ENSCHYG00000016544)	CNMD (ENSCHYG00000016613)	SUGT1 (ENSCHYG00000016730)	ELF1 (ENSCHYG00000016851)	ENSCHYG00000016947	KBTBD6 (ENSCHYG00000017049)	KBTBD7 (ENSCHYG00000017098)	MTRF1 (ENSCHYG00000017123)	NAA16 (ENSCHYG00000017247) ##22	ENSCHYG00000018532	ENSCHYG00000018580	ENSCHYG00000018641	VWA8 (ENSCHYG00000018691)	DGKH (ENSCHYG00000019526)	ENSCHYG00000020537	AKAP11 (ENSCHYG00000020568)	TNFSF11 (ENSCHYG00000020756)	FAM216B (ENSCHYG00000020887)	EPSTI1 (ENSCHYG00000020957)	DNAJC15 (ENSCHYG00000021166)	ENOX1 (ENSCHYG00000021225)	CCDC122 (ENSCHYG00000021466)	LACC1 (ENSCHYG00000021511)	SERP2 (ENSCHYG00000021664)
Percora_a	ANCESTRAL SPECIES	25	ENSGT00940000155487	ENSGT00940000157767	ENSGT00950000185064	ENSGT00900000143582	ENSGT00940000156894	ENSGT00900000143708	ENSGT00940000155454	ENSGT00940000155219	ENSGT00480000042679.b.b	ENSGT00390000013700	ENSGT00940000157039.b	ENSGT00390000013956	ENSGT00940000155175.B	ENSGT00940000155175.A	ENSGT00940000156877	ENSGT00950000183174.B.b ##22	ENSGT00550000076230	ENSGT00390000011709	ENSGT00390000006601	ENSGT00940000164406	ENSGT00940000158106	ENSGT00940000153313.B	ENSGT01070000253816.a.a.b	ENSGT00940000154512.a	ENSGT00390000013820	ENSGT00940000159907	ENSGT00390000006788.a.b	ENSGT00390000005130	ENSGT00390000000693	ENSGT00390000014262	ENSGT00940000162467.b
Siberian musk deer	DUPLICATION
Siberian musk deer	MODERN SPECIES	17		ENSMMSG00000019306	ENSMMSG00000019340	OLFM4 (ENSMMSG00000019358)	PCDH8 (ENSMMSG00000019403)	CNMD (ENSMMSG00000019460)	SUGT1 (ENSMMSG00000019517)	ELF1 (ENSMMSG00000019566)	ENSMMSG00000019595	ENSMMSG00000019606	ENSMMSG00000019629	ENSMMSG00000019685	KBTBD7 (ENSMMSG00000019725)	ENSMMSG00000019729	ENSMMSG00000019739 ##22	ENSMMSG00000019760 ##22	RGCC (ENSMMSG00000019778)	VWA8 (ENSMMSG00000019834)	DGKH (ENSMMSG00000020161)	ENSMMSG00000020326	AKAP11 (ENSMMSG00000020343)
Siberian musk deer	MODERN SPECIES	17			ENSMMSG00000019306	ENSMMSG00000019340	OLFM4 (ENSMMSG00000019358)	PCDH8 (ENSMMSG00000019403)	CNMD (ENSMMSG00000019460)	SUGT1 (ENSMMSG00000019517)	ELF1 (ENSMMSG00000019566)	ENSMMSG00000019595	ENSMMSG00000019606	ENSMMSG00000019629	ENSMMSG00000019685	KBTBD7 (ENSMMSG00000019725)	ENSMMSG00000019729	ENSMMSG00000019739 ##22	ENSMMSG00000019760 ##22	RGCC (ENSMMSG00000019778)	VWA8 (ENSMMSG00000019834)	DGKH (ENSMMSG00000020161)	ENSMMSG00000020326	AKAP11 (ENSMMSG00000020343)
Bovidae	ANCESTRAL SPECIES	25	ENSGT00950000185064	ENSGT00390000012420.f	ENSGT00900000143582	ENSGT00940000156894	ENSGT00900000143708	ENSGT00940000155454	ENSGT00940000155219	ENSGT00480000042679.b.b	ENSGT00390000013700	ENSGT00940000157039.b	ENSGT01030000240190	ENSGT00390000013956	ENSGT00940000155175.B	ENSGT00940000155175.A	ENSGT00940000156877	ENSGT00950000183174.B.b ##22	ENSGT00550000076230	ENSGT00390000011709	ENSGT00390000006601	ENSGT00940000164406	ENSGT00940000158106	ENSGT00940000153313.B	ENSGT01070000253816.a.a.b	ENSGT00940000154512.a	ENSGT00390000013820	ENSGT00940000159907	ENSGT00390000006788.a.b	ENSGT00390000005130	ENSGT00390000000693	ENSGT00390000014262	ENSGT00940000162467.b
Caprinae	ANCESTRAL SPECIES	37	ENSGT00940000157767	ENSGT00390000012420.f	ENSGT00900000143582	ENSGT00940000156894	ENSGT00900000143708	ENSGT00940000155454	ENSGT00940000155219	ENSGT00480000042679.b.b	ENSGT00390000013700	ENSGT00940000157039.b	ENSGT01030000240190	ENSGT00390000013956	ENSGT00940000155175.B	ENSGT00940000155175.A	ENSGT00940000156877	ENSGT00950000183174.B.b ##22	ENSGT00390000011709	ENSGT00390000006601	ENSGT00940000158106	ENSGT00940000153313.B	ENSGT01070000253816.a.a.b	ENSGT00940000154512.a	ENSGT00390000013820	ENSGT00940000159907	ENSGT00390000006788.a.b	ENSGT00390000005130	ENSGT00390000000693	ENSGT00940000162467.b	ENSGT00940000159144.B	ENSGT00390000003758	ENSGT00390000012569.b
Rambouillet Sheep	MODERN SPECIES	1	ENSOARG00020004852	ENSOARG00020004868	PCDH17 (ENSOARG00020004877)	VDAC1 (ENSOARG00020004891)	ENSOARG00020004908	OLFM4 (ENSOARG00020004943)	PCDH8 (ENSOARG00020004982)	CNMD (ENSOARG00020005002)	SUGT1 (ENSOARG00020005060)	ELF1 (ENSOARG00020005153)	ENSOARG00020005207	WBP4 (ENSOARG00020005228)	KBTBD6 (ENSOARG00020005273)	KBTBD7 (ENSOARG00020005282)	MTRF1 (ENSOARG00020005295)	NAA16 (ENSOARG00020005343) ##22	RGCC (ENSOARG00020005649)	VWA8 (ENSOARG00020005673)	DGKH (ENSOARG00020005790)	AKAP11 (ENSOARG00020006005)	TNFSF11 (ENSOARG00020006031)	FAM216B (ENSOARG00020006081)	EPSTI1 (ENSOARG00020006110)	ENSOARG00020006129	ENOX1 (ENSOARG00020006161)	ENSOARG00020006192	CCDC122 (ENSOARG00020006216)	LACC1 (ENSOARG00020006292)	SERP2 (ENSOARG00020006397)	NUFIP1 (ENSOARG00020006417)	ENSOARG00020006616
Goat	MODERN SPECIES	3	ENSCHIG00000018989	PCDH17 (ENSCHIG00000011906)	ENSCHIG00000007273	ENSCHIG00000020046	ENSCHIG00000017455	OLFM4 (ENSCHIG00000012620)	PCDH8 (ENSCHIG00000007364)	ENSCHIG00000018869	CNMD (ENSCHIG00000011842)	SUGT1 (ENSCHIG00000016538)	ELF1 (ENSCHIG00000022154)	WBP4 (ENSCHIG00000013146)	KBTBD6 (ENSCHIG00000008480)	KBTBD7 (ENSCHIG00000008970)	MTRF1 (ENSCHIG00000011810)	NAA16 (ENSCHIG00000020957) ##22	RGCC (ENSCHIG00000021125)	VWA8 (ENSCHIG00000014923)	DGKH (ENSCHIG00000006200)	AKAP11 (ENSCHIG00000013636)	TNFSF11 (ENSCHIG00000015014)	FAM216B (ENSCHIG00000024226)	EPSTI1 (ENSCHIG00000023487)	DNAJC15 (ENSCHIG00000024974)	ENSCHIG00000017754	ENOX1 (ENSCHIG00000021948)	CCDC122 (ENSCHIG00000005141)	LACC1 (ENSCHIG00000023585)	SERP2 (ENSCHIG00000017254)	TSC22D1 (ENSCHIG00000012362)	NUFIP1 (ENSCHIG00000006835)
Bovinae	ANCESTRAL SPECIES	20	ENSGT00950000185064	ENSGT00960000190184	ENSGT00390000012420.f	ENSGT00900000143582	ENSGT00940000156894	ENSGT00940000155454	ENSGT00940000155219	ENSGT00480000042679.b.b	ENSGT00390000013700	ENSGT00940000157039.b	ENSGT01030000240190	ENSGT00390000013956	ENSGT00940000155175.B	ENSGT00940000155175.A	ENSGT00940000156877	ENSGT00950000183174.B.b ##22	ENSGT00550000076230	ENSGT00390000011709	ENSGT00390000006601	ENSGT00940000164406	ENSGT00940000158106	ENSGT00940000153313.B	ENSGT01070000253816.a.a.b	ENSGT00940000154512.a	ENSGT00390000013820	ENSGT00940000159907	ENSGT00390000006788.a.b	ENSGT00390000005130	ENSGT00390000000693	ENSGT00390000014262	ENSGT00940000162467.b
Bos	ANCESTRAL SPECIES	22	ENSGT00940000157767	ENSGT00950000185064	ENSGT00960000190184	ENSGT00390000012420.f	ENSGT00900000143582	ENSGT00940000156894	ENSGT00940000155454	ENSGT00940000155219	ENSGT00480000042679.b.b	ENSGT00390000013700	ENSGT00940000157039.b	ENSGT00390000013956	ENSGT00940000155175.B	ENSGT00940000155175.A	ENSGT00940000156877	ENSGT00950000183174.B.b ##22	ENSGT00550000076230	ENSGT00390000011709	ENSGT00390000006601.i	ENSGT00940000164406	ENSGT00940000158106	ENSGT00940000153313.B	ENSGT01070000253816.a.a.b	ENSGT00940000154512.a	ENSGT00390000013820	ENSGT00940000159907	ENSGT00390000006788.a.b	ENSGT00390000005130	ENSGT00390000000693	ENSGT00390000014262	ENSGT00940000162467.b
Bos_a	ANCESTRAL SPECIES	55	ENSGT00940000155487	ENSGT00940000157767	ENSGT00950000185064	ENSGT00900000143582	ENSGT00940000156894	ENSGT00940000155454	ENSGT00940000155219	ENSGT00480000042679.b.b	ENSGT00390000013700	ENSGT00940000157039.b	ENSGT00390000013956	ENSGT00940000155175.B	ENSGT00940000155175.A	ENSGT00940000156877	ENSGT00550000076230	ENSGT00950000183174.B.b ##22	ENSGT00390000011709	ENSGT00390000006601.i	ENSGT00940000158106	ENSGT00940000153313.B	ENSGT01070000253816.a.a.b	ENSGT00940000154512.a	ENSGT00390000013820	ENSGT00940000159907	ENSGT00390000006788.a.b	ENSGT00390000005130	ENSGT00390000000693	ENSGT00390000014262	ENSGT00940000162467.b	ENSGT00940000159144.B	ENSGT00390000003758
Domestic yak	MODERN SPECIES	6	ENSBGRG00000006511	ENSBGRG00000006501	PCDH17 (ENSBGRG00000006468)	ENSBGRG00000006447	ENSBGRG00000006431	ENSBGRG00000006404	OLFM4 (ENSBGRG00000006393)	PCDH8 (ENSBGRG00000006338)	CNMD (ENSBGRG00000006282)	SUGT1 (ENSBGRG00000006244)	ELF1 (ENSBGRG00000006174)	WBP4 (ENSBGRG00000006089)	KBTBD6 (ENSBGRG00000006050)	KBTBD7 (ENSBGRG00000006036)	MTRF1 (ENSBGRG00000006009)	NAA16 (ENSBGRG00000005856) ##22	RGCC (ENSBGRG00000005828)	VWA8 (ENSBGRG00000005506)	ENSBGRG00000005473	DGKH (ENSBGRG00000005383)	AKAP11 (ENSBGRG00000005093)	TNFSF11 (ENSBGRG00000005035)	FAM216B (ENSBGRG00000004982)	EPSTI1 (ENSBGRG00000004611)	DNAJC15 (ENSBGRG00000004544)	ENSBGRG00000004533	ENOX1 (ENSBGRG00000004490)	CCDC122 (ENSBGRG00000004429)	LACC1 (ENSBGRG00000004396)	SMIM2 (ENSBGRG00000004347)	ENSBGRG00000004322
Wild yak	MODERN SPECIES	437										ENSBMUG00000005585	WBP4 (ENSBMUG00000005572)	KBTBD6 (ENSBMUG00000005564)	KBTBD7 (ENSBMUG00000005561)	MTRF1 (ENSBMUG00000005557)	ENSBMUG00000005549	NAA16 (ENSBMUG00000005517) ##22	ENSBMUG00000004932
Bos_b	ANCESTRAL SPECIES	4	ENSGT00940000157767	ENSGT00940000164795	ENSGT00390000012420.f	ENSGT00900000143582	ENSGT00940000156894	ENSGT00390000013931.a.a.b	ENSGT00940000155454	ENSGT00940000155219	ENSGT00480000042679.b.b	ENSGT00390000013700	ENSGT00940000157039.b	ENSGT00390000013956	ENSGT00940000155175.B	ENSGT00940000155175.A	ENSGT00940000156877	ENSGT00950000183174.B.b ##22	ENSGT00550000076230	ENSGT00390000011709	ENSGT00390000006601.i	ENSGT00940000164406	ENSGT00940000158106	ENSGT00940000153313.B	ENSGT01070000253816.a.a.b	ENSGT00940000154512.a	ENSGT00390000013820	ENSGT00940000159907	ENSGT00390000006788.a.b	ENSGT00390000005130	ENSGT00390000000693	ENSGT00940000162467.b	ENSGT00940000163647
Cow	MODERN SPECIES	3	ENSBTAG00000051623	ENSBTAG00000053708	ENSBTAG00000051281	PCDH17 (ENSBTAG00000010420)	ENSBTAG00000053445	ENSBTAG00000025953	OLFM4 (ENSBTAG00000022779)	PCDH8 (ENSBTAG00000018179)	CNMD (ENSBTAG00000025502)	SUGT1 (ENSBTAG00000002137)	ELF1 (ENSBTAG00000007356)	MTRF1 (ENSBTAG00000012260)	WBP4 (ENSBTAG00000016637)	KBTBD6 (ENSBTAG00000008656)	KBTBD7 (ENSBTAG00000039823)	NAA16 (ENSBTAG00000038251) ##22	ENSBTAG00000052870	RGCC (ENSBTAG00000034885)	VWA8 (ENSBTAG00000001133)	ENSBTAG00000053271	DGKH (ENSBTAG00000013879)	AKAP11 (ENSBTAG00000014752)	TNFSF11 (ENSBTAG00000008924)	FAM216B (ENSBTAG00000003595)	EPSTI1 (ENSBTAG00000019054)	DNAJC15 (ENSBTAG00000034785)	ENOX1 (ENSBTAG00000012434)	CCDC122 (ENSBTAG00000034753)	LACC1 (ENSBTAG00000016691)	SERP2 (ENSBTAG00000051524)	TSC22D1 (ENSBTAG00000047739)
Hybrid Bos Indicus	MODERN SPECIES	3	DIAPH3 (ENSBIXG00005024684)	ENSBIXG00005024539	PCDH17 (ENSBIXG00005024501)	ENSBIXG00005024454	ENSBIXG00005004173	ENSBIXG00005024414	OLFM4 (ENSBIXG00005024360)	PCDH8 (ENSBIXG00005024326)	CNMD (ENSBIXG00005024281)	SUGT1 (ENSBIXG00005007180)	ELF1 (ENSBIXG00005006286)	WBP4 (ENSBIXG00005006910)	KBTBD6 (ENSBIXG00005006842)	KBTBD7 (ENSBIXG00005024104)	MTRF1 (ENSBIXG00005024075)	NAA16 (ENSBIXG00005024029) ##22	ENSBIXG00005023942	ENSBIXG00005006058	VWA8 (ENSBIXG00005023867)	ENSBIXG00005006905	DGKH (ENSBIXG00005023801)	AKAP11 (ENSBIXG00005023417)	TNFSF11 (ENSBIXG00005004003)	FAM216B (ENSBIXG00005023313)	EPSTI1 (ENSBIXG00005003975)	DNAJC15 (ENSBIXG00005023206)	ENSBIXG00005023187	ENOX1 (ENSBIXG00005023147)	ENSBIXG00005023104	CCDC122 (ENSBIXG00005003936)	LACC1 (ENSBIXG00005023079)
American bison	MODERN SPECIES	3149					ENSBBBG00000015212	OLFM4 (ENSBBBG00000015204)	PCDH8 (ENSBBBG00000015190)	CNMD (ENSBBBG00000003528)	SUGT1 (ENSBBBG00000002778)	ELF1 (ENSBBBG00000015139)	ENSBBBG00000008913	WBP4 (ENSBBBG00000015111)	KBTBD6 (ENSBBBG00000002790)	KBTBD7 (ENSBBBG00000015058)	MTRF1 (ENSBBBG00000008587)	NAA16 (ENSBBBG00000000798) ##22	ENSBBBG00000003721
Suina	ANCESTRAL SPECIES	29	ENSGT00940000155079.b	ENSGT00940000156743	ENSGT00940000155487	ENSGT00940000157767.d	ENSGT00940000156894	ENSGT00940000155454	ENSGT00940000155219	ENSGT00480000042679.b.b	ENSGT00390000013700	ENSGT00950000186331	ENSGT00940000157039.b	ENSGT00390000013956	ENSGT00940000155175.B	ENSGT00940000155175.A	ENSGT00940000156877	ENSGT00950000183174.B.b ##22	ENSGT00390000011709	ENSGT00390000006601	ENSGT00940000158106	ENSGT00940000153313.B	ENSGT01070000253816.a.a.b	ENSGT00940000154512.a	ENSGT00390000013820	ENSGT00940000159907	ENSGT00390000006788.a.b	ENSGT00390000005130	ENSGT00390000000693	ENSGT00390000014262	ENSGT00940000162467.b	ENSGT00940000159144.B	ENSGT00390000003758
Chacoan peccary	MODERN SPECIES	216	ENSCWAG00000019419	PCDH17 (ENSCWAG00000019432)	ENSCWAG00000019461	ENSCWAG00000019477	ENSCWAG00000019495	OLFM4 (ENSCWAG00000019527)	ENSCWAG00000019571	PCDH8 (ENSCWAG00000000054)	CNMD (ENSCWAG00000000097)	SUGT1 (ENSCWAG00000000140)	ELF1 (ENSCWAG00000000184)	WBP4 (ENSCWAG00000000246)	KBTBD6 (ENSCWAG00000000273)	KBTBD7 (ENSCWAG00000000301)	MTRF1 (ENSCWAG00000000321)	NAA16 (ENSCWAG00000000371) ##22	RGCC (ENSCWAG00000000406)	VWA8 (ENSCWAG00000000455)	DGKH (ENSCWAG00000000630)	AKAP11 (ENSCWAG00000000801)	TNFSF11 (ENSCWAG00000000851)	FAM216B (ENSCWAG00000000885)	EPSTI1 (ENSCWAG00000000924)	DNAJC15 (ENSCWAG00000001051)	ENOX1 (ENSCWAG00000001073)	CCDC122 (ENSCWAG00000001124)	LACC1 (ENSCWAG00000001143)	ENSCWAG00000001170	SERP2 (ENSCWAG00000001186)	TSC22D1 (ENSCWAG00000001219)	NUFIP1 (ENSCWAG00000001267)
Pig	DUPLICATION
Pig	MODERN SPECIES	2	TDRD3 (ENSSSCG00000009449)	DIAPH3 (ENSSSCG00000009448)	PCDH17 (ENSSSCG00000009446)	ENSSSCG00000035135	OLFM4 (ENSSSCG00000009444)	PCDH8 (ENSSSCG00000009445)	CNMD (ENSSSCG00000009442)	SUGT1 (ENSSSCG00000039338)	ENSSSCG00000047512	ELF1 (ENSSSCG00000009440)	WBP4 (ENSSSCG00000031627)	KBTBD7 (ENSSSCG00000037413)	KBTBD6 (ENSSSCG00000031378)	MTRF1 (ENSSSCG00000009436)	ENSSSCG00000034029	ENSSSCG00000060529 ##22	ENSSSCG00000009435 ##22	RGCC (ENSSSCG00000009434)	ENSSSCG00000057192	VWA8 (ENSSSCG00000029837)	DGKH (ENSSSCG00000009431)	AKAP11 (ENSSSCG00000009430)	TNFSF11 (ENSSSCG00000052062)	FAM216B (ENSSSCG00000009428)	EPSTI1 (ENSSSCG00000037572)	DNAJC15 (ENSSSCG00000038251)	ENOX1 (ENSSSCG00000021818)	CCDC122 (ENSSSCG00000009426)	LACC1 (ENSSSCG00000009425)	SMIM2 (ENSSSCG00000033908)	SERP2 (ENSSSCG00000040405)
Pig	MODERN SPECIES	2	DIAPH3 (ENSSSCG00000009448)	PCDH17 (ENSSSCG00000009446)	ENSSSCG00000035135	OLFM4 (ENSSSCG00000009444)	PCDH8 (ENSSSCG00000009445)	CNMD (ENSSSCG00000009442)	SUGT1 (ENSSSCG00000039338)	ENSSSCG00000047512	ELF1 (ENSSSCG00000009440)	WBP4 (ENSSSCG00000031627)	KBTBD7 (ENSSSCG00000037413)	KBTBD6 (ENSSSCG00000031378)	MTRF1 (ENSSSCG00000009436)	ENSSSCG00000034029	ENSSSCG00000060529 ##22	ENSSSCG00000009435 ##22	RGCC (ENSSSCG00000009434)	ENSSSCG00000057192	VWA8 (ENSSSCG00000029837)	DGKH (ENSSSCG00000009431)	AKAP11 (ENSSSCG00000009430)	TNFSF11 (ENSSSCG00000052062)	FAM216B (ENSSSCG00000009428)	EPSTI1 (ENSSSCG00000037572)	DNAJC15 (ENSSSCG00000038251)	ENOX1 (ENSSSCG00000021818)	CCDC122 (ENSSSCG00000009426)	LACC1 (ENSSSCG00000009425)	SMIM2 (ENSSSCG00000033908)	SERP2 (ENSSSCG00000040405)	ENSSSCG00000009422
Euarchontoglires	ANCESTRAL SPECIES	21	ENSGT00940000155487	ENSGT00940000157767	ENSGT00900000143708	ENSGT00900000143582	ENSGT00940000156894	ENSGT00940000155454	ENSGT00940000155219	ENSGT00480000042679.b.b	ENSGT00390000013700	ENSGT00950000186331	ENSGT00940000157039.b	ENSGT00390000013956	ENSGT00940000155175.B	ENSGT00940000155175.A	ENSGT00940000156877	ENSGT00950000183174.B.b ##22	ENSGT00550000076230	ENSGT00390000011709	ENSGT00390000006601	ENSGT00940000158106	ENSGT00940000153313.B	ENSGT01070000253816.a.a.b	ENSGT00940000154512.a	ENSGT00390000013820	ENSGT00940000159907	ENSGT00390000006788.a.b	ENSGT00390000005130	ENSGT00390000000693	ENSGT00390000014262	ENSGT00940000162467.b	ENSGT00940000163647
Euarchontoglires_A	ANCESTRAL SPECIES	21	ENSGT00940000155487	ENSGT00940000157767	ENSGT00950000185064	ENSGT00900000143582	ENSGT00940000156894	ENSGT00940000155454	ENSGT00940000155219	ENSGT00480000042679.b.b	ENSGT00390000013700	ENSGT00950000186331	ENSGT00940000157039.b	ENSGT00390000013956	ENSGT00940000155175.B	ENSGT00940000155175.A	ENSGT00940000156877	ENSGT00950000183174.B.b ##22	ENSGT00390000011709	ENSGT00390000006601	ENSGT00940000158106	ENSGT00940000153313.B	ENSGT01070000253816.a.a.b	ENSGT00940000154512.a	ENSGT00390000013820	ENSGT00940000159907	ENSGT00390000006788.a.b	ENSGT00390000005130	ENSGT00390000000693	ENSGT00390000014262	ENSGT00940000162467.b	ENSGT00940000163647	ENSGT00940000159144.B
Tree shrew	MODERN SPECIES	893														KBTBD7 (ENSTBEG00000004375)	ENSTBEG00000004696	NAA16 (ENSTBEG00000004973) ##22	RGCC (ENSTBEG00000006686)	VWA8 (ENSTBEG00000007037)
Glires	ANCESTRAL SPECIES	22	ENSGT00940000155487	ENSGT00940000157767	ENSGT00950000185064	ENSGT00900000143582	ENSGT00940000156894	ENSGT00940000155454	ENSGT00940000155219	ENSGT00480000042679.b.b	ENSGT00390000013700	ENSGT00950000186331	ENSGT00940000157039.b	ENSGT00390000013956	ENSGT00940000155175.B	ENSGT00940000155175.A	ENSGT00940000156877	ENSGT00950000183174.B.b ##22	ENSGT00390000011709	ENSGT00390000006601	ENSGT00940000158106	ENSGT00940000153313.B	ENSGT01070000253816.a.a.b	ENSGT00940000154512.a	ENSGT00390000013820	ENSGT00940000159907	ENSGT00390000006788.a.b	ENSGT00390000005130	ENSGT00390000000693	ENSGT00390000014262	ENSGT00940000162467.b	ENSGT00940000163647	ENSGT00940000159144.B
Lagomorpha	ANCESTRAL SPECIES	56	ENSGT00390000001134.a.a	ENSGT00940000160425	ENSGT00940000155079.b	ENSGT00940000156743	ENSGT00940000155487	ENSGT00940000157767	ENSGT00940000156894	ENSGT00940000155454	ENSGT00940000155219	ENSGT00480000042679.b.b	ENSGT00390000013700	ENSGT00940000157039.b	ENSGT00390000013956	ENSGT00940000155175.A	ENSGT00940000156877	ENSGT00950000183174.B.b ##22	ENSGT00390000011709	ENSGT00390000006601	ENSGT00940000158106	ENSGT00940000153313.B	ENSGT00940000154512.a	ENSGT00390000013820	ENSGT00940000159907	ENSGT00390000006788.a.b	ENSGT00390000005130	ENSGT00390000000693	ENSGT00390000014262	ENSGT00940000162467.b	ENSGT00940000163647	ENSGT00390000003758	ENSGT00390000012569.b
Rabbit	MODERN SPECIES	19	DIAPH3 (ENSOCUG00000001719)	ENSOCUG00000037923	PCDH17 (ENSOCUG00000005237)	ENSOCUG00000024464	ENSOCUG00000023238	ENSOCUG00000026932	ENSOCUG00000006349 ##14	ENSOCUG00000034427	PCDH8 (ENSOCUG00000008197)	CNMD (ENSOCUG00000005852)	ENSOCUG00000036807	ELF1 (ENSOCUG00000010580)	WBP4 (ENSOCUG00000004256)	ENSOCUG00000014016	MTRF1 (ENSOCUG00000025207)	NAA16 (ENSOCUG00000013024) ##22	ENSOCUG00000032894	ENSOCUG00000021190	ENSOCUG00000014903	ENSOCUG00000039664	VWA8 (ENSOCUG00000014909)	DGKH (ENSOCUG00000015981)	AKAP11 (ENSOCUG00000016016)	ENSOCUG00000006608	TNFSF11 (ENSOCUG00000011051)	EPSTI1 (ENSOCUG00000000716)	DNAJC15 (ENSOCUG00000001696)	ENOX1 (ENSOCUG00000006639)	ENSOCUG00000034735	ENSOCUG00000031598	CCDC122 (ENSOCUG00000015938)
Pika	MODERN SPECIES	3459																NAA16 (ENSOPRG00000008517) ##22	RGCC (ENSOPRG00000008542)
Rodentia	ANCESTRAL SPECIES	22	ENSGT00940000155487	ENSGT00940000157767	ENSGT00950000185064	ENSGT00900000143582	ENSGT00940000156894	ENSGT00940000155454	ENSGT00940000155219	ENSGT00480000042679.b.b	ENSGT00390000013700	ENSGT00950000186331	ENSGT00940000157039.b	ENSGT00390000013956	ENSGT00940000155175.B	ENSGT00940000155175.A	ENSGT00940000156877	ENSGT00950000183174.B.b ##22	ENSGT00390000011709	ENSGT00390000006601	ENSGT00940000158106	ENSGT00940000153313.B	ENSGT01070000253816.a.a.b	ENSGT00940000154512.a	ENSGT00390000013820	ENSGT00940000159907	ENSGT00390000006788.a.b	ENSGT00390000005130	ENSGT00390000000693	ENSGT00940000162467.b	ENSGT00940000163647	ENSGT00940000159144.B	ENSGT00390000003758
Rodentia_B	ANCESTRAL SPECIES	25	ENSGT00940000155079.b	ENSGT00940000156743	ENSGT00940000155487	ENSGT00940000157767	ENSGT00940000156894	ENSGT00940000155454	ENSGT00940000155219	ENSGT00480000042679.b.b	ENSGT00390000013700	ENSGT00950000186331	ENSGT00940000157039.b	ENSGT00390000013956	ENSGT00940000155175.B	ENSGT00940000155175.A	ENSGT00940000156877	ENSGT00950000183174.B.b ##22	ENSGT00390000011709	ENSGT00390000006601	ENSGT00940000158106	ENSGT00940000153313.B	ENSGT01070000253816.a.a.b	ENSGT00940000154512.a	ENSGT00390000013820	ENSGT00940000159907	ENSGT00390000006788.a.b	ENSGT00390000005130	ENSGT00390000000693	ENSGT00940000162467.b	ENSGT00940000163647	ENSGT00940000159144.B	ENSGT00390000003758
Myomorpha	ANCESTRAL SPECIES	32	ENSGT00940000155079.b	ENSGT00940000156743	ENSGT00940000155487	ENSGT00940000157767	ENSGT00940000156894	ENSGT00940000155454	ENSGT00940000155219	ENSGT00480000042679.b.b	ENSGT00390000013700	ENSGT00950000186331	ENSGT00940000157039.b	ENSGT00390000013956	ENSGT00940000155175.B	ENSGT00940000155175.A	ENSGT00940000156877	ENSGT00950000183174.B.b ##22	ENSGT00390000011709	ENSGT00390000006601	ENSGT00940000158106	ENSGT00940000153313.B	ENSGT01070000253816.a.a.b	ENSGT00940000154512.a	ENSGT00390000013820	ENSGT00940000159907	ENSGT00390000006788.a.b	ENSGT00390000005130	ENSGT00390000000693	ENSGT00940000162467.b	ENSGT00940000163647	ENSGT00940000159144.B	ENSGT00390000003758
Muroidea	ANCESTRAL SPECIES	25	ENSGT00940000155079.b	ENSGT00940000156743	ENSGT00940000155487	ENSGT00940000157767	ENSGT00940000156894	ENSGT00940000155454	ENSGT00940000155219	ENSGT00480000042679.b.b	ENSGT00390000013700	ENSGT00950000186331	ENSGT00940000157039.b	ENSGT00390000013956	ENSGT00940000155175.B	ENSGT00940000155175.A	ENSGT00940000156877	ENSGT00950000183174.B.b ##22	ENSGT00390000011709	ENSGT00390000006601	ENSGT00940000158106	ENSGT00940000153313.B	ENSGT01070000253816.a.a.b	ENSGT00940000154512.a	ENSGT00390000013820	ENSGT00940000159907	ENSGT00390000006788.a.b	ENSGT00390000005130	ENSGT00390000000693	ENSGT00940000162467.b	ENSGT00940000163647	ENSGT00940000159144.B	ENSGT00390000003758
Muroidea_A	ANCESTRAL SPECIES	10	ENSGT00940000155079.b	ENSGT00940000156743	ENSGT00940000155487	ENSGT00940000157767	ENSGT00940000156894	ENSGT00940000155454	ENSGT00940000155219	ENSGT00480000042679.b.b	ENSGT00390000013700	ENSGT00950000186331	ENSGT00940000157039.b	ENSGT00390000013956	ENSGT00940000155175.B	ENSGT00940000155175.A	ENSGT00940000156877	ENSGT00950000183174.B.b ##22	ENSGT00390000011709	ENSGT00390000006601	ENSGT00940000158106	ENSGT00940000153313.B	ENSGT01070000253816.a.a.b	ENSGT00940000154512.a	ENSGT00390000013820	ENSGT00940000159907	ENSGT00390000006788.a.b	ENSGT00390000005130	ENSGT00390000000693	ENSGT00940000162467.b	ENSGT00940000159144.B	ENSGT00390000003758	ENSGT00390000012569.b
Cricetidae	ANCESTRAL SPECIES	15	ENSGT00940000160425	ENSGT00940000155079.b	ENSGT00940000156743	ENSGT00940000155487	ENSGT00940000157767	ENSGT00940000156894	ENSGT00940000155454	ENSGT00940000155219	ENSGT00480000042679.b.b	ENSGT00390000013700	ENSGT00940000157039.b	ENSGT00390000013956	ENSGT00940000155175.B	ENSGT00940000155175.A	ENSGT00940000156877	ENSGT00950000183174.B.b ##22	ENSGT00390000011709	ENSGT00390000006601	ENSGT00940000158106	ENSGT00940000153313.B	ENSGT01070000253816.a.a.b	ENSGT00940000154512.a	ENSGT00390000013820	ENSGT00940000159907	ENSGT00390000006788.a.b	ENSGT00390000005130	ENSGT00390000000693	ENSGT00940000162467.b	ENSGT00940000159144.B	ENSGT00390000003758	ENSGT00390000012569.b.a
Cricetinae	ANCESTRAL SPECIES	18	ENSGT00940000160425	ENSGT00940000155079.b	ENSGT00940000156743	ENSGT00940000155487	ENSGT00940000157767	ENSGT00940000156894	ENSGT00940000155454	ENSGT00940000155219	ENSGT00480000042679.b.b	ENSGT00390000013700	ENSGT00940000157039.b	ENSGT00390000013956	ENSGT00940000155175.B	ENSGT00940000155175.A	ENSGT00940000156877	ENSGT00950000183174.B.b ##22	ENSGT00390000011709	ENSGT00390000006601	ENSGT00940000158106	ENSGT00940000153313.B	ENSGT01070000253816.a.a.b	ENSGT00940000154512.a	ENSGT00390000013820	ENSGT00940000159907	ENSGT00390000006788.a.b	ENSGT00390000005130	ENSGT00390000000693	ENSGT00940000162467.b	ENSGT00940000159144.B	ENSGT00390000003758	ENSGT00390000012569.b.a
Chinese hamster chok1gshd	MODERN SPECIES	3	Diaph3 (ENSCGRG00001019022)	Pcdh17 (ENSCGRG00001009409)	ENSCGRG00001017435	ENSCGRG00001014173	Olfm4 (ENSCGRG00001022304)	Pcdh8 (ENSCGRG00001015602)	Cnmd (ENSCGRG00001001658)	ENSCGRG00001022636	Elf1 (ENSCGRG00001016200)	Wbp4 (ENSCGRG00001002031)	ENSCGRG00001009361	ENSCGRG00001000650	Kbtbd7 (ENSCGRG00001022213)	Mtrf1 (ENSCGRG00001003065)	ENSCGRG00001008906	Naa16 (ENSCGRG00001023139) ##22	Rgcc (ENSCGRG00001010708)	ENSCGRG00001011992	ENSCGRG00001017855 #14	Vwa8 (ENSCGRG00001023461)	Dgkh (ENSCGRG00001012161)	Akap11 (ENSCGRG00001020906)	Tnfsf11 (ENSCGRG00001013327)	Fam216b (ENSCGRG00001000086)	Epsti1 (ENSCGRG00001009306)	Dnajc15 (ENSCGRG00001000292)	Enox1 (ENSCGRG00001014073)	Ccdc122 (ENSCGRG00001006861)	Lacc1 (ENSCGRG00001020034)	Serp2 (ENSCGRG00001003518)	Tsc22d1 (ENSCGRG00001001346)
Cricetidae_B	ANCESTRAL SPECIES	11	ENSGT00390000001134.a.a	ENSGT00940000160425	ENSGT00940000155079.b	ENSGT00940000156743	ENSGT00940000155487	ENSGT00940000157767	ENSGT00940000156894	ENSGT00940000155454	ENSGT00940000155219	ENSGT00480000042679.b.b	ENSGT00390000013700	ENSGT00940000157039.b	ENSGT00390000013956	ENSGT00940000155175.A	ENSGT00940000156877	ENSGT00950000183174.B.b ##22	ENSGT00390000011709	ENSGT00390000006601	ENSGT00940000158106	ENSGT00940000153313.B	ENSGT01070000253816.a.a.b	ENSGT00940000154512.a	ENSGT00390000013820	ENSGT00940000159907	ENSGT00390000006788.a.b	ENSGT00390000005130	ENSGT00390000000693	ENSGT00940000162467.b	ENSGT00940000163647	ENSGT00390000003758	ENSGT00390000012569.b.a
Prairie vole	MODERN SPECIES	89	Poln (ENSMOCG00000009309)	Pcdh20 (ENSMOCG00000008392)	Tdrd3 (ENSMOCG00000012962)	Diaph3 (ENSMOCG00000012431)	ENSMOCG00000011873	Pcdh17 (ENSMOCG00000004856)	ENSMOCG00000019804	Olfm4 (ENSMOCG00000016963)	Pcdh8 (ENSMOCG00000020531)	Cnmd (ENSMOCG00000001113)	Sugt1 (ENSMOCG00000002097)	Elf1 (ENSMOCG00000000165)	Wbp4 (ENSMOCG00000012721)	Kbtbd7 (ENSMOCG00000004494)	Mtrf1 (ENSMOCG00000011945)	Naa16 (ENSMOCG00000013086) ##22
Northern American deer mouse	MODERN SPECIES	22	Pcdh20 (ENSPEMG00000000491)	Tdrd3 (ENSPEMG00000004287)	Diaph3 (ENSPEMG00000013687)	ENSPEMG00000008782	ENSPEMG00000012614	Pcdh17 (ENSPEMG00000029088)	ENSPEMG00000008810	Olfm4 (ENSPEMG00000018107)	Pcdh8 (ENSPEMG00000002218)	Cnmd (ENSPEMG00000001366)	ENSPEMG00000001486	Elf1 (ENSPEMG00000021551)	Wbp4 (ENSPEMG00000021764)	Kbtbd7 (ENSPEMG00000015250)	Mtrf1 (ENSPEMG00000020982)	Naa16 (ENSPEMG00000021265) ##22	Rgcc (ENSPEMG00000013380)	Vwa8 (ENSPEMG00000016456)	Dgkh (ENSPEMG00000020442)	Akap11 (ENSPEMG00000017768)	Tnfsf11 (ENSPEMG00000026330)	Fam216b (ENSPEMG00000010168)	Epsti1 (ENSPEMG00000012785)	Dnajc15 (ENSPEMG00000017585)	Enox1 (ENSPEMG00000009188)	Ccdc122 (ENSPEMG00000013832)	Lacc1 (ENSPEMG00000011166)	ENSPEMG00000024909	Tsc22d1 (ENSPEMG00000022760)	ENSPEMG00000012421	Nufip1 (ENSPEMG00000023639)
Murinae	ANCESTRAL SPECIES	16	ENSGT00940000155079.b	ENSGT00940000156743	ENSGT00940000155487	ENSGT00940000157767	ENSGT00940000156894	ENSGT00940000155454	ENSGT00940000155219	ENSGT00480000042679.b.b	ENSGT00390000013700	ENSGT00950000186331	ENSGT00940000157039.b	ENSGT00390000013956	ENSGT00940000155175.B	ENSGT00940000155175.A	ENSGT00940000156877	ENSGT00950000183174.B.b ##22	ENSGT00390000011709	ENSGT00390000006601	ENSGT00940000158106	ENSGT00940000153313.B	ENSGT01070000253816.a.a.b	ENSGT00940000154512.a	ENSGT00390000013820	ENSGT00940000159907	ENSGT00390000006788.a.b	ENSGT00390000005130	ENSGT00390000000693	ENSGT00940000162467.b	ENSGT00940000159144.B	ENSGT00390000003758	ENSGT00390000012569.b
Mus	ANCESTRAL SPECIES	8	ENSGT00940000155079.b	ENSGT00940000156743	ENSGT00940000155487	ENSGT00940000157767	ENSGT00940000156894	ENSGT00940000155454	ENSGT00860000135986	ENSGT00940000155219	ENSGT00480000042679.b.b	ENSGT00390000013700	ENSGT00940000157039.b	ENSGT00390000013956	ENSGT00940000155175.B	ENSGT00940000155175.A	ENSGT00940000156877	ENSGT00950000183174.B.b ##22	ENSGT00390000011709	ENSGT00390000006601	ENSGT00940000158106	ENSGT00940000153313.B	ENSGT01070000253816.a.a.b	ENSGT00940000154512.a	ENSGT00390000013820	ENSGT00940000159907	ENSGT00860000135855	ENSGT00390000006788.a.b	ENSGT00390000005130	ENSGT00390000000693	ENSGT00940000162467.b	ENSGT00940000159144.B	ENSGT00390000003758
Mus_A	ANCESTRAL SPECIES	12	ENSGT00940000155079.b	ENSGT00940000156743	ENSGT00940000155487	ENSGT00940000157767	ENSGT00940000156894	ENSGT00940000155454	ENSGT00860000135986	ENSGT00940000155219	ENSGT00480000042679.b.b	ENSGT00390000013700	ENSGT00940000157039.b	ENSGT00390000013956	ENSGT00940000155175.B	ENSGT00940000155175.A	ENSGT00940000156877	ENSGT00950000183174.B.b ##22	ENSGT00390000011709	ENSGT00940000157896.f	ENSGT00390000006601	ENSGT00940000158106	ENSGT00940000153313.B	ENSGT01070000253816.a.a.b	ENSGT00940000154512.a	ENSGT00390000013820	ENSGT00940000159907	ENSGT00860000135855	ENSGT00390000006788.a.b	ENSGT00390000005130	ENSGT00390000000693	ENSGT00940000162467.b	ENSGT00940000159144.B
Mus_B	ANCESTRAL SPECIES	11	ENSGT00940000155079.b	ENSGT00940000156743	ENSGT00940000155487	ENSGT00940000157767	ENSGT00940000156894	ENSGT00940000155454	ENSGT00860000135986	ENSGT00940000155219	ENSGT00480000042679.b.b	ENSGT00390000013700	ENSGT00940000157039.b	ENSGT00390000013956	ENSGT00940000155175.B	ENSGT00940000155175.A	ENSGT00940000156877	ENSGT00950000183174.B.b ##22	ENSGT00390000011709	ENSGT00940000157896.f	ENSGT00390000006601	ENSGT00940000158106	ENSGT00940000153313.B	ENSGT01070000253816.a.a.b	ENSGT00940000154512.a	ENSGT00390000013820	ENSGT00940000159907	ENSGT00860000135855	ENSGT00390000006788.a.b	ENSGT00390000005130	ENSGT00390000000693	ENSGT00940000162467.b	ENSGT00940000159144.B
Mus_C	ANCESTRAL SPECIES	20	ENSGT00940000160425	ENSGT00940000155079.b	ENSGT00940000156743	ENSGT00940000155487	ENSGT00940000157767	ENSGT00940000155454	ENSGT00860000135986	ENSGT00940000155219	ENSGT00480000042679.b.b	ENSGT00390000013700	ENSGT00940000157039.b	ENSGT00390000013956	ENSGT00940000155175.B	ENSGT00940000155175.A	ENSGT00940000156877	ENSGT00950000183174.B.b ##22	ENSGT00390000011709	ENSGT00940000157896.f	ENSGT00390000006601	ENSGT00940000158106	ENSGT00940000153313.B	ENSGT01070000253816.a.a.b	ENSGT00940000154512.a	ENSGT00390000013820	ENSGT00940000159907	ENSGT00860000135855	ENSGT00390000006788.a.b	ENSGT00390000005130	ENSGT00390000000693	ENSGT00940000162467.b	ENSGT00940000159144.B
Steppe mouse	MODERN SPECIES	2976												Wbp4 (ENSMSIG00000004742)	Kbtbd6 (ENSMSIG00000004735)	Kbtbd7 (ENSMSIG00000004721)	Mtrf1 (ENSMSIG00000004689)	Naa16 (ENSMSIG00000004556) ##22	Rgcc (ENSMSIG00000004519)	ENSMSIG00000004513	Vwa8 (ENSMSIG00000004400)	Dgkh (ENSMSIG00000004016)	Akap11 (ENSMSIG00000003844)	Tnfsf11 (ENSMSIG00000003809)	Fam216b (ENSMSIG00000003781)	Epsti1 (ENSMSIG00000003651)
spretus	MODERN SPECIES	5	Pcdh20 (MGP_SPRETEiJ_G0020449)	Tdrd3 (MGP_SPRETEiJ_G0020448)	Diaph3 (MGP_SPRETEiJ_G0020447)	MGP_SPRETEiJ_G0020446	Pcdh17 (MGP_SPRETEiJ_G0020445)	MGP_SPRETEiJ_G0020444	Olfm4 (MGP_SPRETEiJ_G0020443)	MGP_SPRETEiJ_G0020442	Pcdh8 (MGP_SPRETEiJ_G0020441)	Cnmd (MGP_SPRETEiJ_G0020440)	Sugt1 (MGP_SPRETEiJ_G0020439)	Elf1 (MGP_SPRETEiJ_G0020438)	Wbp4 (MGP_SPRETEiJ_G0020437)	MGP_SPRETEiJ_G0020436	Mtrf1 (MGP_SPRETEiJ_G0020435)	Naa16 (MGP_SPRETEiJ_G0020434) ##22	Rgcc (MGP_SPRETEiJ_G0020433)	Zfp957 (MGP_SPRETEiJ_G0020432)	Vwa8 (MGP_SPRETEiJ_G0020431)	Dgkh (MGP_SPRETEiJ_G0020430)	Akap11 (MGP_SPRETEiJ_G0020429)	Tnfsf11 (MGP_SPRETEiJ_G0020428)	Fam216b (MGP_SPRETEiJ_G0020427)	Epsti1 (MGP_SPRETEiJ_G0020426)	Dnajc15 (MGP_SPRETEiJ_G0020425)	MGP_SPRETEiJ_G0020424	Enox1 (MGP_SPRETEiJ_G0020423)	Ccdc122 (MGP_SPRETEiJ_G0020422)	MGP_SPRETEiJ_G0020421	Serp2 (MGP_SPRETEiJ_G0020420)	Tsc22d1 (MGP_SPRETEiJ_G0020419)
Mouse	MODERN SPECIES	5	Spertl (ENSMUSG00000034689)	Pcdh9 (ENSMUSG00000055421)	Pcdh20 (ENSMUSG00000050505)	Tdrd3 (ENSMUSG00000022019)	Diaph3 (ENSMUSG00000022021)	Pcdh17 (ENSMUSG00000035566)	Olfm4 (ENSMUSG00000022026)	Pcdh8 (ENSMUSG00000036422)	Cnmd (ENSMUSG00000022025)	Sugt1 (ENSMUSG00000022024)	Elf1 (ENSMUSG00000036461)	Wbp4 (ENSMUSG00000022023)	Kbtbd6 (ENSMUSG00000075502)	Kbtbd7 (ENSMUSG00000043881)	Mtrf1 (ENSMUSG00000022022)	Naa16 (ENSMUSG00000022020) ##22	Rgcc (ENSMUSG00000022018)	Zfp957 (ENSMUSG00000071262)	Vwa8 (ENSMUSG00000058997)	Dgkh (ENSMUSG00000034731)	Akap11 (ENSMUSG00000022016)	Tnfsf11 (ENSMUSG00000022015)	Fam216b (ENSMUSG00000045655)	Epsti1 (ENSMUSG00000022014)	Dnajc15 (ENSMUSG00000022013)	Enox1 (ENSMUSG00000022012)	Ccdc122 (ENSMUSG00000034795)	Lacc1 (ENSMUSG00000044350)	Serp2 (ENSMUSG00000052584)	Tsc22d1 (ENSMUSG00000022010)	Nufip1 (ENSMUSG00000022009)
Ryukyu mouse	MODERN SPECIES	5	Pcdh9 (MGP_CAROLIEiJ_G0019554)	Pcdh20 (MGP_CAROLIEiJ_G0019553)	Tdrd3 (MGP_CAROLIEiJ_G0019551)	Diaph3 (MGP_CAROLIEiJ_G0019550)	Pcdh17 (MGP_CAROLIEiJ_G0019549)	Olfm4 (MGP_CAROLIEiJ_G0019548)	MGP_CAROLIEiJ_G0019547	Pcdh8 (MGP_CAROLIEiJ_G0019546)	Cnmd (MGP_CAROLIEiJ_G0019545)	Sugt1 (MGP_CAROLIEiJ_G0019544)	Elf1 (MGP_CAROLIEiJ_G0019543)	Wbp4 (MGP_CAROLIEiJ_G0019542)	MGP_CAROLIEiJ_G0019541	Kbtbd7 (MGP_CAROLIEiJ_G0019540)	Mtrf1 (MGP_CAROLIEiJ_G0019539)	Naa16 (MGP_CAROLIEiJ_G0019538) ##22	Rgcc (MGP_CAROLIEiJ_G0019537)	MGP_CAROLIEiJ_G0019536	Vwa8 (MGP_CAROLIEiJ_G0019535)	Dgkh (MGP_CAROLIEiJ_G0019534)	Akap11 (MGP_CAROLIEiJ_G0019533)	Tnfsf11 (MGP_CAROLIEiJ_G0019532)	Fam216b (MGP_CAROLIEiJ_G0019531)	Epsti1 (MGP_CAROLIEiJ_G0019530)	Dnajc15 (MGP_CAROLIEiJ_G0019529)	MGP_CAROLIEiJ_G0019528	Enox1 (MGP_CAROLIEiJ_G0019527)	Ccdc122 (MGP_CAROLIEiJ_G0019526)	MGP_CAROLIEiJ_G0019525	Serp2 (MGP_CAROLIEiJ_G0019524)	Tsc22d1 (MGP_CAROLIEiJ_G0019523)
Shrew mouse	MODERN SPECIES	21	Pcdh9 (MGP_PahariEiJ_G0030571)	Pcdh20 (MGP_PahariEiJ_G0030570)	Tdrd3 (MGP_PahariEiJ_G0030569)	Diaph3 (MGP_PahariEiJ_G0030568)	Pcdh17 (MGP_PahariEiJ_G0030567)	Olfm4 (MGP_PahariEiJ_G0030566)	MGP_PahariEiJ_G0030565	Pcdh8 (MGP_PahariEiJ_G0030564)	Cnmd (MGP_PahariEiJ_G0030563)	Sugt1 (MGP_PahariEiJ_G0030562)	Elf1 (MGP_PahariEiJ_G0030561)	MGP_PahariEiJ_G0030560	MGP_PahariEiJ_G0030559	Kbtbd7 (MGP_PahariEiJ_G0030558)	Mtrf1 (MGP_PahariEiJ_G0030557)	Naa16 (MGP_PahariEiJ_G0030556) ##22	Rgcc (MGP_PahariEiJ_G0030555)	Vwa8 (MGP_PahariEiJ_G0030553)	Dgkh (MGP_PahariEiJ_G0030552)	Akap11 (MGP_PahariEiJ_G0030551)	Tnfsf11 (MGP_PahariEiJ_G0030550)	Fam216b (MGP_PahariEiJ_G0030549)	Epsti1 (MGP_PahariEiJ_G0030548)	Dnajc15 (MGP_PahariEiJ_G0030547)	MGP_PahariEiJ_G0030546	Enox1 (MGP_PahariEiJ_G0030545)	Ccdc122 (MGP_PahariEiJ_G0030544)	Lacc1 (MGP_PahariEiJ_G0030543)	Serp2 (MGP_PahariEiJ_G0030542)	Tsc22d1 (MGP_PahariEiJ_G0030541)	Nufip1 (MGP_PahariEiJ_G0030540)
Rat	MODERN SPECIES	6	AABR07018627.1 (ENSRNOG00000038122)	Calm2 (ENSRNOG00000030871)	LOC100361180 (ENSRNOG00000048927)	LOC306079 (ENSRNOG00000031061)	Olfm4 (ENSRNOG00000013280)	Pcdh8 (ENSRNOG00000013101)	Cnmd (ENSRNOG00000012821)	AC123280.1 (ENSRNOG00000033141)	ENSRNOG00000029808	Sugt1 (ENSRNOG00000012594)	Elf1 (ENSRNOG00000011762)	Wbp4 (ENSRNOG00000011678)	Kbtbd6 (ENSRNOG00000011657)	Kbtbd7 (ENSRNOG00000064764)	Mtrf1 (ENSRNOG00000047106)	Naa16 (ENSRNOG00000045863) ##22	ENSRNOG00000067430	Rgcc (ENSRNOG00000042960)	ENSRNOG00000064147	Vwa8 (ENSRNOG00000053145)	Dgkh (ENSRNOG00000010065)	Akap11 (ENSRNOG00000009987)	Tnfsf11 (ENSRNOG00000071047)	Fam216b (ENSRNOG00000021943)	Epsti1 (ENSRNOG00000009471)	Dnajc15 (ENSRNOG00000009063)	Enox1 (ENSRNOG00000047817)	Ccdc122 (ENSRNOG00000042404)	Lacc1 (ENSRNOG00000022094)	Serp2 (ENSRNOG00000038228)	Tsc22d1 (ENSRNOG00000001030)
Upper Galilee mountains blind mole rat	MODERN SPECIES	1698				ENSNGAG00000023820	ENSNGAG00000022145	Olfm4 (ENSNGAG00000013517)	Pcdh8 (ENSNGAG00000000936)	ENSNGAG00000023431	Cnmd (ENSNGAG00000022665)	Sugt1 (ENSNGAG00000021964)	Elf1 (ENSNGAG00000023108)	Wbp4 (ENSNGAG00000024369)	Kbtbd6 (ENSNGAG00000012119)	Kbtbd7 (ENSNGAG00000011545)	Mtrf1 (ENSNGAG00000014460)	Naa16 (ENSNGAG00000004140) ##22	Rgcc (ENSNGAG00000022423)	Vwa8 (ENSNGAG00000010244)	Dgkh (ENSNGAG00000024075)	Akap11 (ENSNGAG00000010398)	Tnfsf11 (ENSNGAG00000023783)	ENSNGAG00000009242	Fam216b (ENSNGAG00000008030)	Epsti1 (ENSNGAG00000020070)	Dnajc15 (ENSNGAG00000012778)	Enox1 (ENSNGAG00000024175)	ENSNGAG00000010951	Ccdc122 (ENSNGAG00000022365)	Lacc1 (ENSNGAG00000023659)
Kangaroo rat	MODERN SPECIES	320	Pcdh9 (ENSDORG00000000735)	ENSDORG00000027613	ENSDORG00000001884	Tdrd3 (ENSDORG00000008714)	Diaph3 (ENSDORG00000000055)	Pcdh17 (ENSDORG00000025566)	ENSDORG00000013874	Olfm4 (ENSDORG00000012987)	Pcdh8 (ENSDORG00000009041)	Cnmd (ENSDORG00000013065)	Sugt1 (ENSDORG00000013064)	Elf1 (ENSDORG00000026436)	Wbp4 (ENSDORG00000007755)	Kbtbd7 (ENSDORG00000023750)	Mtrf1 (ENSDORG00000016429)	Naa16 (ENSDORG00000012584) ##22	Rgcc (ENSDORG00000015195)	Vwa8 (ENSDORG00000011298)	Dgkh (ENSDORG00000005024)	Tnfsf11 (ENSDORG00000026136)	Fam216b (ENSDORG00000007655)	Epsti1 (ENSDORG00000004992)	Dnajc15 (ENSDORG00000013550)	Enox1 (ENSDORG00000001328)	Ccdc122 (ENSDORG00000015236)	Lacc1 (ENSDORG00000015240)	Serp2 (ENSDORG00000028153)	ENSDORG00000025839	Nufip1 (ENSDORG00000003359)	Gpalpp1 (ENSDORG00000003360)	Gtf2f2 (ENSDORG00000002860)
Rodentia_A	ANCESTRAL SPECIES	22	ENSGT00940000155487	ENSGT00940000157767	ENSGT00950000185064	ENSGT00900000143582	ENSGT00940000156894	ENSGT00900000143708	ENSGT00940000155454	ENSGT00940000155219	ENSGT00480000042679.b.b	ENSGT00390000013700	ENSGT00950000186331	ENSGT00940000157039.b	ENSGT00390000013956	ENSGT00940000155175.A	ENSGT00940000156877	ENSGT00950000183174.B.b ##22	ENSGT00390000011709	ENSGT00390000006601	ENSGT00940000158106	ENSGT00940000153313.B	ENSGT01070000253816.a.a.b	ENSGT00940000154512.a	ENSGT00390000013820	ENSGT00940000159907	ENSGT00390000006788.a.b	ENSGT00390000005130	ENSGT00390000000693	ENSGT00940000162467.b	ENSGT00940000163647	ENSGT00940000166021	ENSGT01060000249039
Sciuridae	ANCESTRAL SPECIES	34	ENSGT00940000160425	ENSGT00940000155079.b	ENSGT00940000156743	ENSGT00940000157767	ENSGT00900000143582	ENSGT00940000156894	ENSGT00940000155454	ENSGT00940000155219	ENSGT00480000042679.b.b	ENSGT00390000013700	ENSGT00950000186331	ENSGT00940000157039.b	ENSGT00390000013956	ENSGT00940000155175.A	ENSGT00940000156877	ENSGT00950000183174.B.b ##22	ENSGT00390000011709	ENSGT00390000006601	ENSGT00940000158106	ENSGT00940000153313.B	ENSGT01070000253816.a.a.b	ENSGT00940000154415.`b.f	ENSGT00940000154512.a	ENSGT00390000013820	ENSGT00940000159907	ENSGT00390000006788.a.b	ENSGT00390000005130	ENSGT00390000000693	ENSGT00940000162467.b	ENSGT00940000159144.B	ENSGT00390000003758
Marmotini	ANCESTRAL SPECIES	29						ENSGT00940000155454	ENSGT00940000155219	ENSGT00480000042679.b.b	ENSGT00390000013700	ENSGT00950000186331	ENSGT00940000157039.b	ENSGT00940000155157.l	ENSGT00390000013956	ENSGT00940000155175.A	ENSGT00940000156877	ENSGT00950000183174.B.b ##22	ENSGT00390000011709	ENSGT00390000006601	ENSGT00940000158106	ENSGT00940000153313.B	ENSGT01070000253816.a.a.b	ENSGT00940000159907	ENSGT00390000006788.a.b	ENSGT00390000005130	ENSGT00390000000693	ENSGT00940000162467.b	ENSGT00940000163647	ENSGT00940000159144.B	ENSGT00390000003758	ENSGT00390000012569.b	ENSGT00940000159552
Marmotini_b	ANCESTRAL SPECIES	240							ENSGT00940000155454	ENSGT00940000155219	ENSGT00480000042679.b.b	ENSGT00390000013700	ENSGT00940000157039.b	ENSGT00940000155157.l	ENSGT00390000013956	ENSGT00940000155175.A	ENSGT00940000156877	ENSGT00950000183174.B.b ##22	ENSGT00390000011709
Arctic ground squirrel	MODERN SPECIES	216							OLFM4 (ENSUPAG00010022208)	PCDH8 (ENSUPAG00010022211)	CNMD (ENSUPAG00010022215)	SUGT1 (ENSUPAG00010022218)	ELF1 (ENSUPAG00010022223)	ENSUPAG00010022225	WBP4 (ENSUPAG00010022226)	KBTBD7 (ENSUPAG00010022229)	MTRF1 (ENSUPAG00010022231)	NAA16 (ENSUPAG00010022237) ##22	RGCC (ENSUPAG00010022251)
Squirrel	MODERN SPECIES	267							OLFM4 (ENSSTOG00000019753)	PCDH8 (ENSSTOG00000022966)	CNMD (ENSSTOG00000004192)	SUGT1 (ENSSTOG00000004159)	ELF1 (ENSSTOG00000007700)	ENSSTOG00000006234	WBP4 (ENSSTOG00000024976)	KBTBD7 (ENSSTOG00000029195)	MTRF1 (ENSSTOG00000021682)	NAA16 (ENSSTOG00000002798) ##22	RGCC (ENSSTOG00000025358)
Alpin marmot	MODERN SPECIES	13						OLFM4 (ENSMMMG00000000484)	PCDH8 (ENSMMMG00000000439)	CNMD (ENSMMMG00000000405)	SUGT1 (ENSMMMG00000000341)	ENSMMMG00000000315	ELF1 (ENSMMMG00000000224)	ENSMMMG00000000196	WBP4 (ENSMMMG00000000179)	KBTBD7 (ENSMMMG00000000126)	MTRF1 (ENSMMMG00000000091)	NAA16 (ENSMMMG00000000060) ##22	RGCC (ENSMMMG00000023619)	VWA8 (ENSMMMG00000023535)	DGKH (ENSMMMG00000023481)	AKAP11 (ENSMMMG00000023475)	TNFSF11 (ENSMMMG00000023474)	ENSMMMG00000023473	EPSTI1 (ENSMMMG00000023471)	ENOX1 (ENSMMMG00000023468)	ENSMMMG00000023467	CCDC122 (ENSMMMG00000023465)	LACC1 (ENSMMMG00000023463)	TSC22D1 (ENSMMMG00000023448)	NUFIP1 (ENSMMMG00000023439)	ENSMMMG00000023437	ENSMMMG00000023435
Eurasian red squirrel	MODERN SPECIES	13	DIAPH3 (ENSSVLG00005003826)	ENSSVLG00005004190	ENSSVLG00005004213	PCDH17 (ENSSVLG00005004228)	ENSSVLG00005004248	ENSSVLG00005004273	OLFM4 (ENSSVLG00005004306)	PCDH8 (ENSSVLG00005004344)	CNMD (ENSSVLG00005004380)	SUGT1 (ENSSVLG00005004421)	ENSSVLG00005004459	ELF1 (ENSSVLG00005004493)	WBP4 (ENSSVLG00005004520)	ENSSVLG00005004557	ENSSVLG00005004565	NAA16 (ENSSVLG00005004585) ##22	RGCC (ENSSVLG00005004637)	VWA8 (ENSSVLG00005004690)	DGKH (ENSSVLG00005000391)	AKAP11 (ENSSVLG00005000468)	TNFSF11 (ENSSVLG00005000540)	ENSSVLG00005000585	FAM216B (ENSSVLG00005000610)	EPSTI1 (ENSSVLG00005000671)	DNAJC15 (ENSSVLG00005000749)	ENOX1 (ENSSVLG00005000776)	CCDC122 (ENSSVLG00005000800)	LACC1 (ENSSVLG00005000824)	SERP2 (ENSSVLG00005000867)	TSC22D1 (ENSSVLG00005000900)	NUFIP1 (ENSSVLG00005000955)
Hystricomorpha	ANCESTRAL SPECIES	25	ENSGT00940000160425	ENSGT00940000155079.b	ENSGT00940000156743	ENSGT00940000155487	ENSGT00940000157767	ENSGT00940000156894	ENSGT00900000143708	ENSGT00940000155454	ENSGT00940000155219	ENSGT00480000042679.b.b	ENSGT00390000013700	ENSGT00940000157039.b	ENSGT00390000013956	ENSGT00940000155175.A	ENSGT00940000156877	ENSGT00950000183174.B.b ##22	ENSGT00390000011709	ENSGT00390000006601	ENSGT00940000158106	ENSGT00940000153313.B	ENSGT01070000253816.a.a.b	ENSGT00940000154512.a	ENSGT00390000013820	ENSGT00940000159907	ENSGT00390000006788.a.b	ENSGT00390000005130	ENSGT00390000000693	ENSGT00940000162467.b	ENSGT00940000163647	ENSGT00940000166021	ENSGT00390000003758
Naked mole-rat female	MODERN SPECIES	2	ENSHGLG00000042301	ENSHGLG00000047426	ENSHGLG00000036656	ENSHGLG00000003692	PCDH8 (ENSHGLG00000003306)	ENSHGLG00000034939	ENSHGLG00000008247	ENSHGLG00000005329	ENSHGLG00000045934	WBP4 (ENSHGLG00000004585)	KBTBD7 (ENSHGLG00000020078)	MTRF1 (ENSHGLG00000003210)	ENSHGLG00000003000	ENSHGLG00000040621	ENSHGLG00000039892	NAA16 (ENSHGLG00000008702) ##22	ENSHGLG00000035169	RGCC (ENSHGLG00000006185)	VWA8 (ENSHGLG00000007298)	DGKH (ENSHGLG00000018938)	ENSHGLG00000007054	ENSHGLG00000046376	ENSHGLG00000036055	ENSHGLG00000043143	FAM216B (ENSHGLG00000004363)	ENSHGLG00000034519	ENSHGLG00000007301	DNAJC15 (ENSHGLG00000005490)	ENSHGLG00000037702	ENOX1 (ENSHGLG00000013344)	CCDC122 (ENSHGLG00000016595)
Hystricomorpha_a	ANCESTRAL SPECIES	21	ENSGT00390000001134.a.a	ENSGT00940000160425	ENSGT00940000155079.b	ENSGT00940000156743	ENSGT00940000155487	ENSGT00940000157767	ENSGT00940000156894	ENSGT00940000155454	ENSGT00940000155219	ENSGT00480000042679.b.b	ENSGT00390000013700	ENSGT00940000157039.b	ENSGT00390000013956	ENSGT00940000155175.A	ENSGT00940000156877	ENSGT00950000183174.B.b ##22	ENSGT00390000011709	ENSGT00390000006601	ENSGT00940000158106	ENSGT00940000153313.B	ENSGT01070000253816.a.a.b	ENSGT00940000154512.a	ENSGT00390000013820	ENSGT00940000159907	ENSGT00390000006788.a.b	ENSGT00390000005130	ENSGT00390000000693	ENSGT01060000249039	ENSGT00940000159144.B	ENSGT00390000003758	ENSGT00390000012569.b
Hystricomorpha_b	ANCESTRAL SPECIES	44	ENSGT00390000001134.a.a	ENSGT00940000160425	ENSGT00940000155079.b	ENSGT00940000156743	ENSGT00940000155487	ENSGT00940000157767	ENSGT00940000156894	ENSGT00940000155454	ENSGT00940000155219	ENSGT00480000042679.b.b	ENSGT00390000013700	ENSGT00940000157039.b	ENSGT00390000013956	ENSGT00940000155175.A	ENSGT00940000156877	ENSGT00950000183174.B.b ##22	ENSGT00390000011709	ENSGT00390000006601	ENSGT00940000158106	ENSGT00940000153313.B	ENSGT00710000106860	ENSGT00950000183097.a.a.b	ENSGT00940000159160	ENSGT00730000111163	ENSGT00940000161772	ENSGT00940000153137.a.b.b.a	ENSGT00390000015682	ENSGT00940000158961	ENSGT00390000006051.b.f.a	ENSGT00390000016051	ENSGT00940000159552
Long-tailed chinchilla	MODERN SPECIES	225														KBTBD7 (ENSCLAG00000017423)	MTRF1 (ENSCLAG00000000582)	NAA16 (ENSCLAG00000000566) ##22	RGCC (ENSCLAG00000000799)	VWA8 (ENSCLAG00000001287)	DGKH (ENSCLAG00000000480)	AKAP11 (ENSCLAG00000000420)	LRRC63 (ENSCLAG00000000306)	LCP1 (ENSCLAG00000000191)	ENSCLAG00000000122	ENSCLAG00000000776	CPB2 (ENSCLAG00000000655)	ZC3H13 (ENSCLAG00000000610)	SIAH3 (ENSCLAG00000000493)	CBY2 (ENSCLAG00000000430)	COG3 (ENSCLAG00000000745)	SLC25A30 (ENSCLAG00000000339)	KCTD4 (ENSCLAG00000000309)
Primates	ANCESTRAL SPECIES	26	ENSGT00910000148597	ENSGT00940000155487	ENSGT00940000157767	ENSGT00900000143582	ENSGT00940000156894	ENSGT00900000143708	ENSGT00940000155454	ENSGT00940000155219	ENSGT00480000042679.b.b	ENSGT00390000013700	ENSGT00940000157039.b	ENSGT00390000013956	ENSGT00940000155175.B	ENSGT00940000155175.A	ENSGT00940000156877	ENSGT00950000183174.B.b ##22	ENSGT00550000076230	ENSGT00390000011709	ENSGT00390000006601	ENSGT00940000158106	ENSGT00940000153313.B	ENSGT01070000253816.a.a.b	ENSGT00940000154512.a	ENSGT00390000013820	ENSGT00940000159907	ENSGT00390000006788.a.b	ENSGT00390000005130	ENSGT00390000000693	ENSGT00390000014262	ENSGT00940000162467.b	ENSGT00940000163647
Strepsirrhini	ANCESTRAL SPECIES	27	ENSGT00940000156743	ENSGT00910000148597	ENSGT00940000155487	ENSGT00940000157767	ENSGT00900000143582	ENSGT00940000156894	ENSGT00940000155454	ENSGT00940000155219	ENSGT00480000042679.b.b	ENSGT00390000013700	ENSGT00940000157039.b	ENSGT00390000013956	ENSGT00940000155175.B	ENSGT00940000155175.A	ENSGT00940000156877	ENSGT00950000183174.B.b ##22	ENSGT00390000011709	ENSGT00390000006601	ENSGT00940000158106	ENSGT00940000153313.B	ENSGT01070000253816.a.a.b	ENSGT00940000154512.a	ENSGT00390000013820	ENSGT00940000159907	ENSGT00390000006788.a.b	ENSGT00390000005130	ENSGT00390000000693	ENSGT00940000162467.b	ENSGT00940000159144.B	ENSGT00390000003758	ENSGT00940000163575
Lemuriformes	ANCESTRAL SPECIES	18	ENSGT00940000156743	ENSGT00910000148597	ENSGT00940000155487	ENSGT00940000157767	ENSGT00900000143582	ENSGT00940000156894	ENSGT00940000155454	ENSGT00940000155219	ENSGT00480000042679.b.b	ENSGT00390000013700.i	ENSGT00940000157039.b	ENSGT00390000013956	ENSGT00940000155175.B	ENSGT00940000155175.A	ENSGT00940000156877	ENSGT00950000183174.B.b ##22	ENSGT00390000011709	ENSGT00390000006601	ENSGT00940000158106	ENSGT00940000153313.B	ENSGT01070000253816.a.a.b	ENSGT00940000154512.a	ENSGT00390000013820	ENSGT00940000159907	ENSGT00390000006788.a.b	ENSGT00390000005130	ENSGT00390000000693	ENSGT00940000162467.b	ENSGT00940000159144.B	ENSGT00390000003758	ENSGT00940000163575
Mouse lemur	MODERN SPECIES	4	PCDH20 (ENSMICG00000032560)	TDRD3 (ENSMICG00000009982)	ENSMICG00000043260	DIAPH3 (ENSMICG00000011388)	PCDH17 (ENSMICG00000008032)	ENSMICG00000028372	OLFM4 (ENSMICG00000001798)	ENSMICG00000036582	PCDH8 (ENSMICG00000014653)	CNMD (ENSMICG00000038059)	SUGT1 (ENSMICG00000014614)	ELF1 (ENSMICG00000035688)	WBP4 (ENSMICG00000047481)	KBTBD7 (ENSMICG00000014566)	MTRF1 (ENSMICG00000033131)	NAA16 (ENSMICG00000017489) ##22	RGCC (ENSMICG00000027653)	VWA8 (ENSMICG00000017491)	ENSMICG00000030374	ENSMICG00000043956	DGKH (ENSMICG00000017492)	AKAP11 (ENSMICG00000027504)	TNFSF11 (ENSMICG00000028647)	FAM216B (ENSMICG00000007430)	EPSTI1 (ENSMICG00000007681)	DNAJC15 (ENSMICG00000036429)	ENOX1 (ENSMICG00000007704)	ENSMICG00000030056	CCDC122 (ENSMICG00000028774)	LACC1 (ENSMICG00000030834)	ENSMICG00000030472
Lemuriformes_a	ANCESTRAL SPECIES	41							ENSGT00940000155454	ENSGT00940000155219	ENSGT00480000042679.b.b	ENSGT00390000013700.i	ENSGT00940000157039.b	ENSGT00390000013956	ENSGT00940000155175.B	ENSGT00940000155175.A	ENSGT00940000156877	ENSGT00950000183174.B.b ##22	ENSGT00390000011709	ENSGT00390000006601	ENSGT00940000158106	ENSGT00940000153313.B	ENSGT01070000253816.a.a.b	ENSGT00940000154512.a	ENSGT00390000013820	ENSGT00940000159907	ENSGT00390000006788.a.b	ENSGT00390000005130	ENSGT00390000000693	ENSGT00940000162467.b	ENSGT00940000159144.B	ENSGT00390000003758	ENSGT00390000012569.b
Coquerels sifaka	MODERN SPECIES	87							OLFM4 (ENSPCOG00000017430)	PCDH8 (ENSPCOG00000014333)	CNMD (ENSPCOG00000018163)	ENSPCOG00000019843	ELF1 (ENSPCOG00000027239)	ENSPCOG00000028102	KBTBD7 (ENSPCOG00000005378)	MTRF1 (ENSPCOG00000018133)	ENSPCOG00000015826	NAA16 (ENSPCOG00000015796) ##22	RGCC (ENSPCOG00000020015)	VWA8 (ENSPCOG00000014732)	DGKH (ENSPCOG00000026563)	AKAP11 (ENSPCOG00000024999)	TNFSF11 (ENSPCOG00000028435)	FAM216B (ENSPCOG00000014171)	EPSTI1 (ENSPCOG00000012615)	ENOX1 (ENSPCOG00000018853)	CCDC122 (ENSPCOG00000009651)	LACC1 (ENSPCOG00000006882)	SERP2 (ENSPCOG00000015434)	TSC22D1 (ENSPCOG00000015247)	NUFIP1 (ENSPCOG00000019764)	GPALPP1 (ENSPCOG00000019173)	KCTD4 (ENSPCOG00000012732)
Greater bamboo lemur	MODERN SPECIES	84																NAA16 (ENSPSMG00000003373) ##22	RGCC (ENSPSMG00000003337)	VWA8 (ENSPSMG00000003269)	ENSPSMG00000003197	DGKH (ENSPSMG00000003018)	AKAP11 (ENSPSMG00000002880)	TNFSF11 (ENSPSMG00000002827)	FAM216B (ENSPSMG00000002797)	EPSTI1 (ENSPSMG00000002788)	DNAJC15 (ENSPSMG00000002751)
Bushbaby	MODERN SPECIES	155	PCDH20 (ENSOGAG00000004914)	TDRD3 (ENSOGAG00000005898)	DIAPH3 (ENSOGAG00000001667)	ENSOGAG00000028793	PCDH17 (ENSOGAG00000034022)	ENSOGAG00000030682	OLFM4 (ENSOGAG00000010443)	PCDH8 (ENSOGAG00000000829)	CNMD (ENSOGAG00000015188)	ENSOGAG00000008220	ELF1 (ENSOGAG00000006754)	WBP4 (ENSOGAG00000015224)	ENSOGAG00000024163	KBTBD7 (ENSOGAG00000024425)	ENSOGAG00000009719	NAA16 (ENSOGAG00000007188) ##22	RGCC (ENSOGAG00000014070)	VWA8 (ENSOGAG00000014073)
Haplorrhini	ANCESTRAL SPECIES	28	ENSGT00940000156743	ENSGT00940000155487	ENSGT00940000157767	ENSGT00900000143582	ENSGT00940000156894	ENSGT00900000143708	ENSGT00940000155454	ENSGT00940000155219	ENSGT00480000042679.b.b	ENSGT00390000013700	ENSGT00940000157039.b	ENSGT00390000013956	ENSGT00940000155175.B	ENSGT00940000155175.A	ENSGT00940000156877	ENSGT00950000183174.B.b ##22	ENSGT00550000076230	ENSGT00390000011709	ENSGT00390000006601	ENSGT00940000158106	ENSGT00940000153313.B	ENSGT01070000253816.a.a.b	ENSGT00940000154512.a	ENSGT00390000013820	ENSGT00940000159907	ENSGT00390000006788.a.b	ENSGT00390000005130	ENSGT00390000000693	ENSGT00390000014262	ENSGT00940000162467.b	ENSGT00940000163647
Tarsier	MODERN SPECIES	3597																NAA16 (ENSTSYG00000007379) ##22
Simiiformes	ANCESTRAL SPECIES	22	ENSGT00940000155313	ENSGT01030000234614.B.a.a.b	ENSGT00730000111188	ENSGT00390000008657	ENSGT00990000203589.a.b.a.a	ENSGT00390000013518	ENSGT00490000043976	ENSGT00940000161558	ENSGT00390000010017	ENSGT00730000110966	ENSGT00940000157039.b	ENSGT00390000013956	ENSGT00940000155175.B	ENSGT00940000155175.A	ENSGT00940000156877	ENSGT00950000183174.B.b ##22	ENSGT00550000076230	ENSGT00390000011709	ENSGT00390000006601	ENSGT00940000158106	ENSGT00940000153313.B	ENSGT01070000253816.a.a.b	ENSGT00940000154512.a	ENSGT00390000013820	ENSGT00940000159907	ENSGT00390000006788.a.b	ENSGT00390000005130	ENSGT00390000000693	ENSGT00390000014262	ENSGT00940000162467.b	ENSGT00940000163647
Catarrhini	ANCESTRAL SPECIES	21	ENSGT01030000234614.B.a.a.b	ENSGT00730000111188	ENSGT00390000008657	ENSGT00990000203589.a.b.a.a	ENSGT00390000013518	ENSGT00490000043976	ENSGT00940000161558	ENSGT00390000010017	ENSGT00730000110966	ENSGT00940000157039.b	ENSGT00390000013956	ENSGT00940000155175.B	ENSGT00940000164310.e	ENSGT00940000155175.A	ENSGT00940000156877	ENSGT00950000183174.B.b ##22	ENSGT00550000076230	ENSGT00390000011709	ENSGT00390000006601	ENSGT00940000158106	ENSGT00940000153313.B	ENSGT01070000253816.a.a.b	ENSGT00940000154512.a	ENSGT00390000013820	ENSGT00940000159907	ENSGT00390000006788.a.b	ENSGT00390000005130	ENSGT00390000000693	ENSGT00390000014262	ENSGT00940000162467.b	ENSGT00940000163647
Hominoidea	ANCESTRAL SPECIES	21	ENSGT01030000234614.B.a.a.b	ENSGT00730000111188	ENSGT00390000008657	ENSGT00990000203589.a.b.a.a	ENSGT00390000013518	ENSGT00490000043976	ENSGT00940000161558	ENSGT00390000010017	ENSGT00730000110966	ENSGT00940000157039.b	ENSGT00390000013956	ENSGT00940000155175.B	ENSGT00940000164310.e	ENSGT00940000155175.A	ENSGT00940000156877	ENSGT00950000183174.B.b ##22	ENSGT00550000076230	ENSGT00390000011709	ENSGT00390000006601	ENSGT00940000154351.k.b.b	ENSGT00940000158106	ENSGT00940000153313.B	ENSGT01070000253816.a.a.b	ENSGT00940000154512.a	ENSGT00390000013820	ENSGT00940000159907	ENSGT00390000006788.a.b	ENSGT00390000005130	ENSGT00390000000693	ENSGT00390000014262	ENSGT00940000162467.b
Hominidae	ANCESTRAL SPECIES	23	ENSGT01030000234614.B.a.a.b	ENSGT00730000111188	ENSGT00390000008657	ENSGT00990000203589.a.b.a.a	ENSGT00390000013518	ENSGT00490000043976	ENSGT00940000161558	ENSGT00390000010017	ENSGT00730000110966	ENSGT00940000157039.b	ENSGT00390000013956	ENSGT00940000155175.B	ENSGT00940000164310.e	ENSGT00940000155175.A	ENSGT00940000156877	ENSGT00950000183174.B.b ##22	ENSGT00550000076230	ENSGT00390000011709	ENSGT00390000006601	ENSGT00940000154351.k.b.b	ENSGT00940000158106	ENSGT00940000153313.B	ENSGT01070000253816.a.a.b	ENSGT00940000154512.a	ENSGT00390000013820	ENSGT00940000159907	ENSGT00390000006788.a.b	ENSGT00390000005130	ENSGT00390000000693	ENSGT00390000014262	ENSGT00940000162467.b
Homo/Pan/Gorilla group	ANCESTRAL SPECIES	23	ENSGT01030000234614.B.a.a.b	ENSGT00730000111188	ENSGT00390000008657	ENSGT00990000203589.a.b.a.a	ENSGT00390000013518	ENSGT00490000043976	ENSGT00940000161558	ENSGT00390000010017	ENSGT00730000110966	ENSGT00940000157039.b	ENSGT00390000013956	ENSGT00940000155175.B	ENSGT00940000164310.e	ENSGT00940000155175.A	ENSGT00940000156877	ENSGT00950000183174.B.b ##22	ENSGT00550000076230	ENSGT00390000011709	ENSGT00390000006601	ENSGT00940000154351.k.b.b	ENSGT00940000158106	ENSGT00940000153313.B	ENSGT01070000253816.a.a.b	ENSGT00940000154512.a	ENSGT00390000013820	ENSGT00940000159907	ENSGT00390000006788.a.b	ENSGT00390000005130	ENSGT00390000000693	ENSGT00390000014262	ENSGT00940000162467.b
Homo/Pan group	ANCESTRAL SPECIES	22	ENSGT01030000234614.B.a.a.b	ENSGT00730000111188	ENSGT00390000008657	ENSGT00990000203589.a.b.a.a	ENSGT00390000013518	ENSGT00490000043976	ENSGT00940000161558	ENSGT00390000010017	ENSGT00730000110966	ENSGT00940000157039.b	ENSGT00390000013956	ENSGT00940000155175.B	ENSGT00940000164310.e	ENSGT00940000155175.A	ENSGT00940000156877	ENSGT00950000183174.B.b ##22	ENSGT00550000076230	ENSGT00390000011709	ENSGT00390000006601	ENSGT00940000154351.k.b.b	ENSGT00940000158106	ENSGT00940000153313.B	ENSGT01070000253816.a.a.b	ENSGT00940000154512.a	ENSGT00390000013820	ENSGT00940000159907	ENSGT00390000006788.a.b	ENSGT00390000005130	ENSGT00390000000693	ENSGT00390000014262	ENSGT00940000162467.b
Pan	ANCESTRAL SPECIES	22	ENSGT01030000234614.B.a.a.b	ENSGT00730000111188	ENSGT00390000008657	ENSGT00990000203589.a.b.a.a	ENSGT00390000013518	ENSGT00490000043976	ENSGT00940000161558	ENSGT00390000010017	ENSGT00730000110966	ENSGT00940000157039.b	ENSGT00390000013956	ENSGT00940000155175.B	ENSGT00940000164310.e	ENSGT00940000155175.A	ENSGT00940000156877	ENSGT00950000183174.B.b ##22	ENSGT00550000076230	ENSGT00390000011709	ENSGT00390000006601	ENSGT00940000154351.k.b.b	ENSGT00940000158106	ENSGT00940000153313.B	ENSGT01070000253816.a.a.b	ENSGT00940000154512.a	ENSGT00390000013820	ENSGT00940000159907	ENSGT00390000006788.a.b	ENSGT00390000005130	ENSGT00390000000693	ENSGT00390000014262	ENSGT00940000162467.b
Chimpanzee	MODERN SPECIES	4	PROSER1 (ENSPTRG00000005802)	NHLRC3 (ENSPTRG00000048931)	LHFPL6 (ENSPTRG00000005804)	COG6 (ENSPTRG00000005805)	ENSPTRG00000044132	FOXO1 (ENSPTRG00000005806)	ENSPTRG00000044978	MRPS31 (ENSPTRG00000005808)	SLC25A15 (ENSPTRG00000044827)	ELF1 (ENSPTRG00000005811)	WBP4 (ENSPTRG00000005812)	KBTBD6 (ENSPTRG00000044355)	ENSPTRG00000050292	KBTBD7 (ENSPTRG00000045760)	MTRF1 (ENSPTRG00000005815)	NAA16 (ENSPTRG00000005816) ##22	ENSPTRG00000048809	RGCC (ENSPTRG00000005819)	VWA8 (ENSPTRG00000005820)	DGKH (ENSPTRG00000005823)	ENSPTRG00000042691	AKAP11 (ENSPTRG00000005824)	ENSPTRG00000050423	TNFSF11 (ENSPTRG00000005827)	FAM216B (ENSPTRG00000050984)	EPSTI1 (ENSPTRG00000045006)	DNAJC15 (ENSPTRG00000047723)	ENOX1 (ENSPTRG00000005832)	CCDC122 (ENSPTRG00000005833)	LACC1 (ENSPTRG00000005834)	SMIM2 (ENSPTRG00000045031)
Bonobo	MODERN SPECIES	4	LHFPL6 (ENSPPAG00000037607)	ENSPPAG00000037842	COG6 (ENSPPAG00000038745)	ENSPPAG00000030477	ENSPPAG00000030762	ENSPPAG00000031131	MRPS31 (ENSPPAG00000031430)	SLC25A15 (ENSPPAG00000031947)	ENSPPAG00000032364	ELF1 (ENSPPAG00000032943)	WBP4 (ENSPPAG00000034971)	KBTBD6 (ENSPPAG00000005767)	ENSPPAG00000010953	KBTBD7 (ENSPPAG00000033088)	MTRF1 (ENSPPAG00000000050)	NAA16 (ENSPPAG00000027330) ##22	ENSPPAG00000019737	RGCC (ENSPPAG00000034498)	VWA8 (ENSPPAG00000004808)	ENSPPAG00000027262	ENSPPAG00000036752	LRCH1 (ENSPPAG00000041174)	ESD (ENSPPAG00000029798)	HTR2A (ENSPPAG00000000160)	ENSPPAG00000035492	ENSPPAG00000039901	SUCLA2 (ENSPPAG00000037438)	NUDT15 (ENSPPAG00000037539)	MED4 (ENSPPAG00000038697)	ENSPPAG00000040476	RB1 (ENSPPAG00000002165)
Human	MODERN SPECIES	4	UFM1 (ENSG00000120686)	FREM2 (ENSG00000150893)	STOML3 (ENSG00000133115)	PROSER1 (ENSG00000120685)	NHLRC3 (ENSG00000188811)	LHFPL6 (ENSG00000183722)	COG6 (ENSG00000133103)	FOXO1 (ENSG00000150907)	MRPS31 (ENSG00000102738)	SLC25A15 (ENSG00000102743)	ELF1 (ENSG00000120690)	WBP4 (ENSG00000120688)	KBTBD6 (ENSG00000165572)	KBTBD7 (ENSG00000120696)	MTRF1 (ENSG00000120662)	NAA16 (ENSG00000172766) ##22	RGCC (ENSG00000102760)	VWA8 (ENSG00000102763)	DGKH (ENSG00000102780)	AKAP11 (ENSG00000023516)	TNFSF11 (ENSG00000120659)	FAM216B (ENSG00000179813)	EPSTI1 (ENSG00000133106)	DNAJC15 (ENSG00000120675)	ENOX1 (ENSG00000120658)	CCDC122 (ENSG00000151773)	LACC1 (ENSG00000179630)	SMIM2 (ENSG00000139656)	SERP2 (ENSG00000151778)	TSC22D1 (ENSG00000102804)	NUFIP1 (ENSG00000083635)
Gorilla	DUPLICATION
Gorilla	MODERN SPECIES	4	ENSGGOG00000043703	ENSGGOG00000022722	LHFPL6 (ENSGGOG00000011641)	COG6 (ENSGGOG00000034837)	ENSGGOG00000040044	FOXO1 (ENSGGOG00000008104)	ENSGGOG00000037880	MRPS31 (ENSGGOG00000006468)	SLC25A15 (ENSGGOG00000025261)	ELF1 (ENSGGOG00000010760)	WBP4 (ENSGGOG00000026935)	KBTBD6 (ENSGGOG00000028568)	ENSGGOG00000044180	KBTBD7 (ENSGGOG00000008962)	MTRF1 (ENSGGOG00000002529)	ENSGGOG00000015823 ##22	ENSGGOG00000043860	ENSGGOG00000023196 ##22	ENSGGOG00000042092	RGCC (ENSGGOG00000002722)	VWA8 (ENSGGOG00000009902)	DGKH (ENSGGOG00000000410)	AKAP11 (ENSGGOG00000013285)	TNFSF11 (ENSGGOG00000011190)	FAM216B (ENSGGOG00000042846)	ENSGGOG00000000804	DNAJC15 (ENSGGOG00000016338)	ENOX1 (ENSGGOG00000006190)	CCDC122 (ENSGGOG00000026396)	LACC1 (ENSGGOG00000008935)	SMIM2 (ENSGGOG00000000280)
Gorilla	MODERN SPECIES	4	TSC22D1 (ENSGGOG00000012857)	SERP2 (ENSGGOG00000044163)	SMIM2 (ENSGGOG00000000280)	LACC1 (ENSGGOG00000008935)	CCDC122 (ENSGGOG00000026396)	ENOX1 (ENSGGOG00000006190)	DNAJC15 (ENSGGOG00000016338)	ENSGGOG00000000804	FAM216B (ENSGGOG00000042846)	TNFSF11 (ENSGGOG00000011190)	AKAP11 (ENSGGOG00000013285)	DGKH (ENSGGOG00000000410)	VWA8 (ENSGGOG00000009902)	RGCC (ENSGGOG00000002722)	ENSGGOG00000042092	ENSGGOG00000023196 ##22	ENSGGOG00000043860	ENSGGOG00000015823 ##22	MTRF1 (ENSGGOG00000002529)	KBTBD7 (ENSGGOG00000008962)	ENSGGOG00000044180	KBTBD6 (ENSGGOG00000028568)	WBP4 (ENSGGOG00000026935)	ELF1 (ENSGGOG00000010760)	SLC25A15 (ENSGGOG00000025261)	MRPS31 (ENSGGOG00000006468)	ENSGGOG00000037880	FOXO1 (ENSGGOG00000008104)	ENSGGOG00000040044	COG6 (ENSGGOG00000034837)	LHFPL6 (ENSGGOG00000011641)
Orangutan	MODERN SPECIES	4	FREM2 (ENSPPYG00000005296)	STOML3 (ENSPPYG00000005297)	PROSER1 (ENSPPYG00000005298)	NHLRC3 (ENSPPYG00000005299)	LHFPL6 (ENSPPYG00000005300)	COG6 (ENSPPYG00000005301)	ENSPPYG00000005302	FOXO1 (ENSPPYG00000005304)	MRPS31 (ENSPPYG00000005306)	SLC25A15 (ENSPPYG00000005307)	ELF1 (ENSPPYG00000005309)	WBP4 (ENSPPYG00000005310)	KBTBD6 (ENSPPYG00000037658)	KBTBD7 (ENSPPYG00000032922)	MTRF1 (ENSPPYG00000005313)	NAA16 (ENSPPYG00000005314) ##22	RGCC (ENSPPYG00000005316)	VWA8 (ENSPPYG00000005317)	DGKH (ENSPPYG00000005318)	AKAP11 (ENSPPYG00000005319)	ENSPPYG00000034024	TNFSF11 (ENSPPYG00000005320)	FAM216B (ENSPPYG00000005321)	ENSPPYG00000005322	DNAJC15 (ENSPPYG00000005323)	ENOX1 (ENSPPYG00000005324)	CCDC122 (ENSPPYG00000005326)	LACC1 (ENSPPYG00000005327)	SMIM2 (ENSPPYG00000005328)	SERP2 (ENSPPYG00000014205)	TSC22D1 (ENSPPYG00000005330)
Gibbon	MODERN SPECIES	20	ENSNLEG00000001229	ENSNLEG00000010547	ENSNLEG00000001175	ENSNLEG00000034558	COG6 (ENSNLEG00000001136)	ENSNLEG00000031647	FOXO1 (ENSNLEG00000001156)	MRPS31 (ENSNLEG00000001164)	SLC25A15 (ENSNLEG00000001185)	ELF1 (ENSNLEG00000001197)	WBP4 (ENSNLEG00000001220)	KBTBD6 (ENSNLEG00000030487)	ENSNLEG00000028817	KBTBD7 (ENSNLEG00000028454)	MTRF1 (ENSNLEG00000001236)	NAA16 (ENSNLEG00000001282) ##22	ENSNLEG00000018204	RGCC (ENSNLEG00000001295)	VWA8 (ENSNLEG00000001302)	DGKH (ENSNLEG00000001525)	ENSNLEG00000033442	AKAP11 (ENSNLEG00000001589)	TNFSF11 (ENSNLEG00000031302)	FAM216B (ENSNLEG00000033194)	ENSNLEG00000001705	ENSNLEG00000018241	ENSNLEG00000027236	DNAJC15 (ENSNLEG00000035144)	ENOX1 (ENSNLEG00000001817)	CCDC122 (ENSNLEG00000001927)	LACC1 (ENSNLEG00000001935)
Cercopithecidae	ANCESTRAL SPECIES	23	ENSGT01030000234614.B.a.a.b	ENSGT00730000111188	ENSGT00390000008657	ENSGT00990000203589.a.b.a.a	ENSGT00390000013518	ENSGT00490000043976	ENSGT00940000161558	ENSGT00390000010017	ENSGT00730000110966	ENSGT00940000157039.b	ENSGT00390000013956	ENSGT00940000155175.B	ENSGT00940000164310.e	ENSGT00940000155175.A	ENSGT00940000156877	ENSGT00950000183174.B.b ##22	ENSGT00550000076230	ENSGT00390000011709	ENSGT00390000006601	ENSGT00940000158106	ENSGT00940000153313.B	ENSGT01070000253816.a.a.b	ENSGT00940000154512.a	ENSGT00390000013820	ENSGT00940000159907	ENSGT00390000006788.a.b	ENSGT00390000005130	ENSGT00390000000693	ENSGT00390000014262	ENSGT00940000162467.b	ENSGT00940000163647
Rhinopithecus	ANCESTRAL SPECIES	315				ENSGT00490000043976	ENSGT00940000161558	ENSGT00390000010017	ENSGT00730000110966	ENSGT00940000157039.b	ENSGT00390000013956	ENSGT00940000155175.B	ENSGT00940000166676	ENSGT00940000155175.A	ENSGT00940000156877	ENSGT00940000153294.m.a.c.b.p.c.a	ENSGT00390000014818.g.b.b	ENSGT00950000183174.B.b ##22	ENSGT00390000011709	ENSGT00390000006601	ENSGT00940000158106	ENSGT00940000153313.B
Golden snub-nosed monkey	MODERN SPECIES	1793			ENSRROG00000032615	FOXO1 (ENSRROG00000041784)	MRPS31 (ENSRROG00000040313)	SLC25A15 (ENSRROG00000041123)	ENSRROG00000043031	ELF1 (ENSRROG00000037511)	WBP4 (ENSRROG00000044405)	KBTBD6 (ENSRROG00000026268)	ENSRROG00000037292	KBTBD7 (ENSRROG00000028641)	MTRF1 (ENSRROG00000035345)	ENSRROG00000015827	ENSRROG00000024797	NAA16 (ENSRROG00000031116) ##22	RGCC (ENSRROG00000029679)	VWA8 (ENSRROG00000043191)	DGKH (ENSRROG00000030004)	AKAP11 (ENSRROG00000030390)	ENSRROG00000025518	TNFSF11 (ENSRROG00000028662)	FAM216B (ENSRROG00000003798)	ENSRROG00000034426
Black snub-nosed monkey	MODERN SPECIES	1507			ENSRBIG00000000400	FOXO1 (ENSRBIG00000026765)	MRPS31 (ENSRBIG00000034673)	SLC25A15 (ENSRBIG00000037546)	ENSRBIG00000000771	ELF1 (ENSRBIG00000028865)	WBP4 (ENSRBIG00000041962)	KBTBD6 (ENSRBIG00000037297)	ENSRBIG00000035054	ENSRBIG00000030206	MTRF1 (ENSRBIG00000007069)	ENSRBIG00000043748	ENSRBIG00000026954	NAA16 (ENSRBIG00000037675) ##22	RGCC (ENSRBIG00000031991)	VWA8 (ENSRBIG00000034278)	DGKH (ENSRBIG00000030309)	AKAP11 (ENSRBIG00000036023)	ENSRBIG00000037894	TNFSF11 (ENSRBIG00000036386)	NDN (ENSRBIG00000009280)	MAGEL2 (ENSRBIG00000007801)	ENSRBIG00000028379
Cercopithecinae	ANCESTRAL SPECIES	20	ENSGT01030000234614.B.a.a.b	ENSGT00730000111188	ENSGT00390000008657	ENSGT00990000203589.a.b.a.a	ENSGT00390000013518	ENSGT00490000043976	ENSGT00940000161558	ENSGT00390000010017	ENSGT00730000110966	ENSGT00940000157039.b	ENSGT00390000013956	ENSGT00940000155175.B	ENSGT00940000164310.e	ENSGT00940000155175.A	ENSGT00940000156877	ENSGT00950000183174.B.b ##22	ENSGT00550000076230	ENSGT00390000011709	ENSGT00390000006601	ENSGT00940000158106	ENSGT00940000153313.B	ENSGT01070000253816.a.a.b	ENSGT00940000154512.a	ENSGT00390000013820	ENSGT00940000159907	ENSGT00390000006788.a.b	ENSGT00390000005130	ENSGT00390000000693	ENSGT00390000014262	ENSGT00940000162467.b	ENSGT00940000159144.B
Vervet Monkey	MODERN SPECIES	22	UFM1 (ENSCSAG00000017856)	FREM2 (ENSCSAG00000017855)	STOML3 (ENSCSAG00000017851)	PROSER1 (ENSCSAG00000017848)	NHLRC3 (ENSCSAG00000017845)	LHFPL6 (ENSCSAG00000018599)	COG6 (ENSCSAG00000017844)	FOXO1 (ENSCSAG00000017842)	MRPS31 (ENSCSAG00000017841)	SLC25A15 (ENSCSAG00000017838)	ELF1 (ENSCSAG00000017837)	WBP4 (ENSCSAG00000017836)	KBTBD6 (ENSCSAG00000018601)	KBTBD7 (ENSCSAG00000018604)	MTRF1 (ENSCSAG00000017835)	NAA16 (ENSCSAG00000017833) ##22	RGCC (ENSCSAG00000017831)	VWA8 (ENSCSAG00000017823)	DGKH (ENSCSAG00000017813)	AKAP11 (ENSCSAG00000017811)	TNFSF11 (ENSCSAG00000017803)	FAM216B (ENSCSAG00000017800)	EPSTI1 (ENSCSAG00000017797)	DNAJC15 (ENSCSAG00000017791)	ENOX1 (ENSCSAG00000017789)	CCDC122 (ENSCSAG00000017787)	LACC1 (ENSCSAG00000017785)	ENSCSAG00000017783	SERP2 (ENSCSAG00000017782)	TSC22D1 (ENSCSAG00000017781)	NUFIP1 (ENSCSAG00000017779)
Cercopithecinae_a	ANCESTRAL SPECIES	19	ENSGT00730000111188	ENSGT00390000008657	ENSGT00990000203589.a.b.a.a	ENSGT00390000013518	ENSGT00490000043976	ENSGT00940000161558	ENSGT00390000016119.q.b	ENSGT00390000010017	ENSGT00730000110966	ENSGT00940000157039.b	ENSGT00390000013956	ENSGT00940000155175.B	ENSGT00940000164310.e	ENSGT00940000155175.A	ENSGT00940000156877	ENSGT00950000183174.B.b ##22	ENSGT00550000076230	ENSGT00390000011709	ENSGT00390000006601	ENSGT00940000158106	ENSGT00940000153313.B	ENSGT01070000253816.a.a.b	ENSGT00940000154512.a	ENSGT00390000013820	ENSGT00940000159907	ENSGT00390000006788.a.b	ENSGT00390000005130	ENSGT00390000000693	ENSGT00390000014262	ENSGT00940000162467.b	ENSGT00940000159144.B
Macaca	ANCESTRAL SPECIES	19	ENSGT00940000155313	ENSGT01030000234614.B.a.a.b	ENSGT00730000111188	ENSGT00390000008657	ENSGT00990000203589.a.b.a.a	ENSGT00390000013518	ENSGT00940000161558	ENSGT00390000016119.q.b	ENSGT00390000010017	ENSGT00730000110966	ENSGT00940000157039.b	ENSGT00390000013956	ENSGT00940000155175.B	ENSGT00940000155175.A	ENSGT00940000156877	ENSGT00950000183174.B.b ##22	ENSGT00390000011709	ENSGT00390000006601	ENSGT00940000158106	ENSGT00940000153313.B	ENSGT01070000253816.a.a.b	ENSGT00940000154512.a	ENSGT00390000013820	ENSGT00940000159907	ENSGT00390000006788.a.b	ENSGT00390000005130	ENSGT00390000000693	ENSGT00390000014262	ENSGT00940000162467.b	ENSGT00940000159144.B	ENSGT00390000003758
Pig-tailed macaque	MODERN SPECIES	180	FREM2 (ENSMNEG00000030699)	STOML3 (ENSMNEG00000036735)	PROSER1 (ENSMNEG00000032422)	NHLRC3 (ENSMNEG00000040342)	LHFPL6 (ENSMNEG00000039244)	COG6 (ENSMNEG00000042440)	FOXO1 (ENSMNEG00000031472)	ENSMNEG00000030680	MRPS31 (ENSMNEG00000031161)	SLC25A15 (ENSMNEG00000042783)	ELF1 (ENSMNEG00000044466)	WBP4 (ENSMNEG00000039992)	KBTBD6 (ENSMNEG00000038336)	KBTBD7 (ENSMNEG00000018279)	MTRF1 (ENSMNEG00000035487)	NAA16 (ENSMNEG00000036159) ##22	RGCC (ENSMNEG00000036862)	VWA8 (ENSMNEG00000039926)	DGKH (ENSMNEG00000038131)	AKAP11 (ENSMNEG00000045160)	ENSMNEG00000036293	TNFSF11 (ENSMNEG00000031662)	FAM216B (ENSMNEG00000040597)	EPSTI1 (ENSMNEG00000027227)	DNAJC15 (ENSMNEG00000039087)	ENOX1 (ENSMNEG00000040967)	CCDC122 (ENSMNEG00000039888)	LACC1 (ENSMNEG00000045105)	SMIM2 (ENSMNEG00000042675)	SERP2 (ENSMNEG00000042638)	TSC22D1 (ENSMNEG00000000209)
Macaca_a	ANCESTRAL SPECIES	19	ENSGT00390000008657	ENSGT01100000263509.a.a.a.c.a.b	ENSGT00990000203589.a.b.a.a	ENSGT00390000013518	ENSGT01100000263493.a.b.a.b.a.b.a.b.a.a.b	ENSGT01100000263539.b.a.a.a.b.b.a.b.b.a.a.a.a.b.a	ENSGT00940000161558	ENSGT00390000016119.q.b	ENSGT00390000010017	ENSGT00730000110966	ENSGT00940000157039.b	ENSGT00390000013956	ENSGT00940000155175.B	ENSGT00940000155175.A	ENSGT00940000156877	ENSGT00950000183174.B.b ##22	ENSGT00390000011709	ENSGT00390000006601	ENSGT00940000158106	ENSGT00940000153313.B	ENSGT01070000253816.a.a.b	ENSGT00940000154512.a	ENSGT00390000013820	ENSGT00940000159907	ENSGT00390000006788.a.b	ENSGT00390000005130	ENSGT00390000000693	ENSGT00390000014262	ENSGT00940000162467.b	ENSGT00940000159144.B	ENSGT00390000003758
Crab-eating macaque	MODERN SPECIES	8	ENSMFAG00000055940	LHFPL6 (ENSMFAG00000039258)	COG6 (ENSMFAG00000030834)	ENSMFAG00000051233	ENSMFAG00000049371	ENSMFAG00000058598	FOXO1 (ENSMFAG00000044565)	ENSMFAG00000003025	MRPS31 (ENSMFAG00000003515)	SLC25A15 (ENSMFAG00000044042)	ELF1 (ENSMFAG00000040587)	WBP4 (ENSMFAG00000034268)	KBTBD6 (ENSMFAG00000056684)	KBTBD7 (ENSMFAG00000002271)	MTRF1 (ENSMFAG00000037972)	NAA16 (ENSMFAG00000043606) ##22	RGCC (ENSMFAG00000043030)	VWA8 (ENSMFAG00000036408)	DGKH (ENSMFAG00000038026)	AKAP11 (ENSMFAG00000003034)	ENSMFAG00000047641	TNFSF11 (ENSMFAG00000057769)	FAM216B (ENSMFAG00000045377)	EPSTI1 (ENSMFAG00000040540)	DNAJC15 (ENSMFAG00000011195)	ENOX1 (ENSMFAG00000025611)	CCDC122 (ENSMFAG00000032197)	LACC1 (ENSMFAG00000032425)	SMIM2 (ENSMFAG00000059404)	ENSMFAG00000032491	TSC22D1 (ENSMFAG00000003381)
Rhesus	MODERN SPECIES	8	PROSER1 (ENSMMUG00000002109)	ENSMMUG00000052735	LHFPL6 (ENSMMUG00000004485)	COG6 (ENSMMUG00000004486)	ENSMMUG00000055317	ENSMMUG00000052676	ENSMMUG00000050501	FOXO1 (ENSMMUG00000030780)	MRPS31 (ENSMMUG00000001899)	ENSMMUG00000045155	ENSMMUG00000063249	ELF1 (ENSMMUG00000007880)	WBP4 (ENSMMUG00000007881)	KBTBD7 (ENSMMUG00000004799)	MTRF1 (ENSMMUG00000017978)	NAA16 (ENSMMUG00000011590) ##22	RGCC (ENSMMUG00000011593)	VWA8 (ENSMMUG00000011594)	ENSMMUG00000055578	DGKH (ENSMMUG00000023076)	AKAP11 (ENSMMUG00000023083)	TNFSF11 (ENSMMUG00000017876)	FAM216B (ENSMMUG00000014925)	EPSTI1 (ENSMMUG00000014926)	ENSMMUG00000056651	DNAJC15 (ENSMMUG00000052269)	ENOX1 (ENSMMUG00000002330)	CCDC122 (ENSMMUG00000007070)	LACC1 (ENSMMUG00000011308)	SMIM2 (ENSMMUG00000062188)	SERP2 (ENSMMUG00000044916)
Cercopithecinae_b	ANCESTRAL SPECIES	28	ENSGT00730000111188	ENSGT00390000008657	ENSGT00990000203589.a.b.a.a	ENSGT00390000013518	ENSGT00490000043976	ENSGT00940000161558.h	ENSGT00390000016119.q.b	ENSGT00390000010017	ENSGT00730000110966	ENSGT00940000157039.b	ENSGT00390000013956	ENSGT00940000155175.B	ENSGT00940000164310.e	ENSGT00940000155175.A	ENSGT00940000156877	ENSGT00950000183174.B.b ##22	ENSGT00550000076230	ENSGT00390000011709	ENSGT00390000006601.k	ENSGT00940000158106	ENSGT00940000153313.B	ENSGT01070000253816.a.a.b	ENSGT00940000154512.a	ENSGT00390000013820	ENSGT00940000159907	ENSGT00390000006788.a.b	ENSGT00390000005130	ENSGT00390000000693	ENSGT00390000014262	ENSGT00940000162467.b	ENSGT00940000159144.B
Olive baboon	MODERN SPECIES	6	STOML3 (ENSPANG00000012476)	PROSER1 (ENSPANG00000000887)	ENSPANG00000007574	LHFPL6 (ENSPANG00000018802)	COG6 (ENSPANG00000021628)	ENSPANG00000050895	FOXO1 (ENSPANG00000016677)	ENSPANG00000033371	MRPS31 (ENSPANG00000012316)	SLC25A15 (ENSPANG00000002941)	ELF1 (ENSPANG00000005718)	WBP4 (ENSPANG00000016720)	KBTBD6 (ENSPANG00000016775)	KBTBD7 (ENSPANG00000023472)	MTRF1 (ENSPANG00000010809)	NAA16 (ENSPANG00000012072) ##22	ENSPANG00000050408	RGCC (ENSPANG00000007573)	VWA8 (ENSPANG00000024519)	DGKH (ENSPANG00000002940)	AKAP11 (ENSPANG00000012071)	TNFSF11 (ENSPANG00000032369)	FAM216B (ENSPANG00000016866)	EPSTI1 (ENSPANG00000012981)	ENSPANG00000047876	DNAJC15 (ENSPANG00000016508)	ENSPANG00000039549	ENSPANG00000041181	ENOX1 (ENSPANG00000017128)	ENSPANG00000050631	ENSPANG00000041630
Cercopithecinae_d	ANCESTRAL SPECIES	54	ENSGT01030000234614.B.a.a.b	ENSGT00730000111188	ENSGT00390000008657	ENSGT00990000203589.a.b.a.a	ENSGT00390000013518	ENSGT00490000043976	ENSGT00940000161558.h	ENSGT00390000010017	ENSGT00730000110966	ENSGT00940000157039.b	ENSGT00390000013956	ENSGT00940000155175.B	ENSGT00940000164310.e	ENSGT00940000155175.A	ENSGT00940000156877	ENSGT00950000183174.B.b ##22	ENSGT00390000011709	ENSGT00390000006601.k	ENSGT00940000158106	ENSGT00940000153313.B	ENSGT01070000253816.a.a.b	ENSGT00940000154512.a	ENSGT00390000013820	ENSGT00940000159907	ENSGT00390000006788.a.b	ENSGT00390000005130	ENSGT00390000000693	ENSGT00390000014262	ENSGT00940000162467.b	ENSGT00940000159144.B	ENSGT00390000003628.b.c.b.a.a.a
Drill	MODERN SPECIES	1037			LHFPL6 (ENSMLEG00000006146)	COG6 (ENSMLEG00000029962)	ENSMLEG00000012276	ENSMLEG00000031876	ENSMLEG00000030043	MRPS31 (ENSMLEG00000031037)	SLC25A15 (ENSMLEG00000028505)	ELF1 (ENSMLEG00000011515)	WBP4 (ENSMLEG00000036795)	KBTBD6 (ENSMLEG00000004429)	ENSMLEG00000039164	KBTBD7 (ENSMLEG00000021884)	MTRF1 (ENSMLEG00000033582)	NAA16 (ENSMLEG00000030571) ##22	RGCC (ENSMLEG00000037303)	ENSMLEG00000031528
Sooty mangabey	MODERN SPECIES	125	FREM2 (ENSCATG00000040998)	STOML3 (ENSCATG00000034392)	PROSER1 (ENSCATG00000033393)	NHLRC3 (ENSCATG00000041715)	LHFPL6 (ENSCATG00000040767)	COG6 (ENSCATG00000039958)	ENSCATG00000040158	FOXO1 (ENSCATG00000036830)	MRPS31 (ENSCATG00000030049)	SLC25A15 (ENSCATG00000045116)	ELF1 (ENSCATG00000034525)	WBP4 (ENSCATG00000035168)	KBTBD6 (ENSCATG00000011867)	KBTBD7 (ENSCATG00000011239)	MTRF1 (ENSCATG00000009909)	NAA16 (ENSCATG00000041542) ##22	RGCC (ENSCATG00000045340)	VWA8 (ENSCATG00000033144)	DGKH (ENSCATG00000033157)	AKAP11 (ENSCATG00000033496)	TNFSF11 (ENSCATG00000025191)	FAM216B (ENSCATG00000043583)	EPSTI1 (ENSCATG00000015725)	DNAJC15 (ENSCATG00000042886)	ENOX1 (ENSCATG00000023824)	CCDC122 (ENSCATG00000017564)	LACC1 (ENSCATG00000038160)	SMIM2 (ENSCATG00000018859)	SERP2 (ENSCATG00000045178)	TSC22D1 (ENSCATG00000015087)	NUFIP1 (ENSCATG00000002411)
Platyrrhini	ANCESTRAL SPECIES	23	ENSGT00940000155313	ENSGT01030000234614.B.a.a.b	ENSGT00730000111188	ENSGT00390000008657	ENSGT00990000203589.a.b.a.a	ENSGT00390000013518	ENSGT00940000161558	ENSGT00390000010017	ENSGT00730000110966	ENSGT00940000154335.a	ENSGT00940000157039.b	ENSGT00390000013956	ENSGT00940000155175.B	ENSGT00940000155175.A	ENSGT00940000156877.n	ENSGT00950000183174.B.b ##22	ENSGT00390000011709	ENSGT00390000006601	ENSGT00940000158106	ENSGT00940000153313.B	ENSGT01070000253816.a.a.b	ENSGT00940000154512.a	ENSGT00390000013820	ENSGT00940000159907	ENSGT00390000006788.a.b	ENSGT00390000005130	ENSGT00390000000693	ENSGT00390000014262	ENSGT00940000162467.b	ENSGT00940000159144.B	ENSGT00390000003758
Cebidae	ANCESTRAL SPECIES	26	ENSGT00940000155313	ENSGT01030000234614.B.a.a.b	ENSGT00730000111188	ENSGT00390000008657	ENSGT00990000203589.a.b.a.a	ENSGT00390000013518	ENSGT00940000161558	ENSGT00390000010017	ENSGT00730000110966	ENSGT00940000154335.a	ENSGT00940000157039.b	ENSGT00390000013956	ENSGT00940000155175.B	ENSGT00940000155175.A	ENSGT00940000156877.m	ENSGT00950000183174.B.b ##22	ENSGT00390000011709	ENSGT00390000006601	ENSGT00940000158106	ENSGT00940000153313.B	ENSGT01070000253816.a.a.b	ENSGT00940000154512.a	ENSGT00390000013820	ENSGT00940000159907	ENSGT00390000006788.a.b	ENSGT00390000005130	ENSGT00390000000693	ENSGT00390000014262	ENSGT00940000162467.b	ENSGT00940000159144.B	ENSGT00390000003758
Cebidae_a	ANCESTRAL SPECIES	28	ENSGT00940000155313	ENSGT01030000234614.B.a.a.b	ENSGT00730000111188	ENSGT00390000008657	ENSGT00990000203589.a.b.a.a	ENSGT00390000013518	ENSGT00940000161558	ENSGT00390000010017	ENSGT00730000110966	ENSGT00940000154335.a	ENSGT00940000157039.b	ENSGT00390000013956	ENSGT00940000155175.B	ENSGT00940000155175.A	ENSGT00940000156877.m	ENSGT00950000183174.B.b ##22	ENSGT00390000011709	ENSGT00950000183098.b.a.a.a.a	ENSGT00390000006601	ENSGT00940000158106	ENSGT00940000153313.B	ENSGT01070000253816.a.a.b	ENSGT00940000154512.a	ENSGT00390000013820	ENSGT00940000159907	ENSGT00390000006788.a.b	ENSGT00390000005130	ENSGT00390000000693	ENSGT00390000014262	ENSGT00940000162467.b	ENSGT00940000159144.B
Capuchin	MODERN SPECIES	314						ENSCCAG00000027012	SNX7 (ENSCCAG00000030230)	PLPPR5 (ENSCCAG00000037863)	PLPPR4 (ENSCCAG00000028873)	ENSCCAG00000018207	ELF1 (ENSCCAG00000036811)	WBP4 (ENSCCAG00000024682)	KBTBD6 (ENSCCAG00000023579)	ENSCCAG00000031713	MTRF1 (ENSCCAG00000035116)	NAA16 (ENSCCAG00000027828) ##22	RGCC (ENSCCAG00000032569)	ENSCCAG00000037264	VWA8 (ENSCCAG00000033369)
Bolivian squirrel monkey	MODERN SPECIES	106	PROSER1 (ENSSBOG00000004637)	NHLRC3 (ENSSBOG00000022898)	ENSSBOG00000020284	LHFPL6 (ENSSBOG00000032581)	COG6 (ENSSBOG00000028313)	ENSSBOG00000019220	MRPS31 (ENSSBOG00000034159)	SLC25A15 (ENSSBOG00000003370)	ENSSBOG00000024617	ELF1 (ENSSBOG00000024356)	WBP4 (ENSSBOG00000026978)	KBTBD6 (ENSSBOG00000008935)	KBTBD7 (ENSSBOG00000011075)	ENSSBOG00000025048	MTRF1 (ENSSBOG00000004572)	NAA16 (ENSSBOG00000030176) ##22	RGCC (ENSSBOG00000034616)	ENSSBOG00000016579	VWA8 (ENSSBOG00000031026)	DGKH (ENSSBOG00000019023)	AKAP11 (ENSSBOG00000013175)	ENSSBOG00000024102	ENSSBOG00000033805	TNFSF11 (ENSSBOG00000027654)	FAM216B (ENSSBOG00000028998)	ENSSBOG00000031675	EPSTI1 (ENSSBOG00000034834)	DNAJC15 (ENSSBOG00000033169)	ENOX1 (ENSSBOG00000035177)	CCDC122 (ENSSBOG00000024643)	LACC1 (ENSSBOG00000032664)
Marmoset	MODERN SPECIES	17	NHLRC3 (ENSCJAG00000017851)	ENSCJAG00000085988	LHFPL6 (ENSCJAG00000017847)	ENSCJAG00000079540	COG6 (ENSCJAG00000017833)	ENSCJAG00000076162	ENSCJAG00000084413	FOXO1 (ENSCJAG00000068966)	MRPS31 (ENSCJAG00000017805)	SLC25A15 (ENSCJAG00000069518)	ENSCJAG00000017791	ELF1 (ENSCJAG00000017782)	WBP4 (ENSCJAG00000017768)	KBTBD6 (ENSCJAG00000017764)	MTRF1 (ENSCJAG00000017739)	NAA16 (ENSCJAG00000017696) ##22	ENSCJAG00000017692	VWA8 (ENSCJAG00000017682)	ENSCJAG00000071641	DGKH (ENSCJAG00000017656)	AKAP11 (ENSCJAG00000017644)	ENSCJAG00000072205	TNFSF11 (ENSCJAG00000083138)	FAM216B (ENSCJAG00000079498)	EPSTI1 (ENSCJAG00000017594)	ENSCJAG00000071289	ENOX1 (ENSCJAG00000017557)	CCDC122 (ENSCJAG00000017551)	LACC1 (ENSCJAG00000017549)	SMIM2 (ENSCJAG00000017548)	SERP2 (ENSCJAG00000075831)
Mas night monkey	MODERN SPECIES	1365							ENSANAG00000028492	ELF1 (ENSANAG00000027987)	ENSANAG00000030196	ENSANAG00000028273	ENSANAG00000031445	WBP4 (ENSANAG00000028222)	KBTBD6 (ENSANAG00000009761)	KBTBD7 (ENSANAG00000019743)	ENSANAG00000023063	NAA16 (ENSANAG00000027984) ##22	RGCC (ENSANAG00000025873)	ENSANAG00000025939	VWA8 (ENSANAG00000026149)	DGKH (ENSANAG00000031866)	AKAP11 (ENSANAG00000029720)
Atlantogenata	ANCESTRAL SPECIES	27	ENSGT00940000155079.b	ENSGT01100000267130	ENSGT00940000156743	ENSGT00940000155487	ENSGT00940000157767	ENSGT00940000156894	ENSGT00940000155454	ENSGT00940000155219	ENSGT00480000042679.b.b	ENSGT00390000013700	ENSGT00940000157039.b	ENSGT00390000013956	ENSGT00940000155175.B	ENSGT00940000155175.C	ENSGT00940000156877	ENSGT00950000183174.B.b ##22	ENSGT00390000011709	ENSGT00390000006601	ENSGT00940000158106	ENSGT00940000153313.B	ENSGT01070000253816.a.a.b	ENSGT00940000154512.a	ENSGT00390000013820	ENSGT00940000159907	ENSGT00390000006788.a.b	ENSGT00390000005130	ENSGT00390000000693	ENSGT00940000162467.b	ENSGT00940000163647	ENSGT00940000159144.B	ENSGT00390000003758
Afrotheria	ANCESTRAL SPECIES	54		ENSGT00940000155079.b	ENSGT00940000156743	ENSGT00940000155487	ENSGT00940000157767	ENSGT00940000156894	ENSGT00940000155454	ENSGT00940000155219	ENSGT00480000042679.b.b	ENSGT00390000013700	ENSGT00940000157039.b	ENSGT00390000013956	ENSGT00940000155175.B	ENSGT00940000155175.C	ENSGT00940000156877	ENSGT00950000183174.B.b ##22	ENSGT00390000011709	ENSGT00390000006601	ENSGT00940000158106	ENSGT00940000153313.B	ENSGT01070000253816.a.a.b	ENSGT00940000154512.a	ENSGT00390000013820	ENSGT00940000159907	ENSGT00390000006788.a.b	ENSGT00390000005130	ENSGT00390000000693	ENSGT00940000162467.b	ENSGT00940000159144.B	ENSGT00390000003758	ENSGT00390000012569.b
Tenrec	MODERN SPECIES	599																NAA16 (ENSETEG00000019278) ##22	ENSETEG00000019282
Afrotheria_a	ANCESTRAL SPECIES	52		ENSGT00940000155079.b	ENSGT00940000156743	ENSGT00940000155487	ENSGT00940000157767	ENSGT00940000156894	ENSGT00940000155454	ENSGT00940000155219	ENSGT00480000042679.b.b	ENSGT00390000013700	ENSGT00940000157039.b	ENSGT00390000013956	ENSGT00940000155175.B	ENSGT00940000155175.C	ENSGT00940000156877	ENSGT00950000183174.B.b ##22	ENSGT00390000011709	ENSGT00390000006601	ENSGT00940000158106	ENSGT00940000153313.B	ENSGT01070000253816.a.a.b	ENSGT00940000154512.a	ENSGT00390000013820	ENSGT00940000159907	ENSGT00390000006788.a.b	ENSGT00390000005130	ENSGT00390000000693	ENSGT00940000162467.b	ENSGT00940000159144.B	ENSGT00390000003758	ENSGT00390000012569.b
Hyrax	MODERN SPECIES	5600																NAA16 (ENSPCAG00000000866) ##22
Elephant	MODERN SPECIES	239	ENSLAFG00000027466	PCDH20 (ENSLAFG00000031335)	TDRD3 (ENSLAFG00000002705)	DIAPH3 (ENSLAFG00000008135)	PCDH17 (ENSLAFG00000002377)	OLFM4 (ENSLAFG00000018242)	PCDH8 (ENSLAFG00000012913)	CNMD (ENSLAFG00000018396)	SUGT1 (ENSLAFG00000009157)	ELF1 (ENSLAFG00000032117)	WBP4 (ENSLAFG00000005901)	KBTBD6 (ENSLAFG00000009917)	ENSLAFG00000017831	ENSLAFG00000022177	ENSLAFG00000031338	NAA16 (ENSLAFG00000003231) ##22	RGCC (ENSLAFG00000003234)	VWA8 (ENSLAFG00000007982)	ENSLAFG00000025669	DGKH (ENSLAFG00000009623)	ENSLAFG00000005777	ENSLAFG00000029763	TNFSF11 (ENSLAFG00000011256)	FAM216B (ENSLAFG00000032301)	EPSTI1 (ENSLAFG00000016838)	DNAJC15 (ENSLAFG00000004343)	ENOX1 (ENSLAFG00000004348)	CCDC122 (ENSLAFG00000008407)	LACC1 (ENSLAFG00000016028)	SERP2 (ENSLAFG00000000162)	TSC22D1 (ENSLAFG00000014574)
Xenarthra	ANCESTRAL SPECIES	365					ENSGT00940000156743	ENSGT00940000155487	ENSGT00940000157767	ENSGT00940000156894	ENSGT00940000155454	ENSGT00940000155219	ENSGT00480000042679.b.b	ENSGT00390000013700	ENSGT00940000157039.b	ENSGT00940000155175.C	ENSGT00940000156877	ENSGT00950000183174.B.b ##22
Sloth	MODERN SPECIES	6041																NAA16 (ENSCHOG00000004216) ##22
Armadillo	MODERN SPECIES	1972	DIAPH3 (ENSDNOG00000015042)	PCDH17 (ENSDNOG00000031265)	ENSDNOG00000044136	ENSDNOG00000032912	ENSDNOG00000018891	PCDH8 (ENSDNOG00000049263)	CNMD (ENSDNOG00000002992)	SUGT1 (ENSDNOG00000002991)	ELF1 (ENSDNOG00000011236)	ENSDNOG00000030716	ENSDNOG00000038203	WBP4 (ENSDNOG00000046013)	ENSDNOG00000049006	ENSDNOG00000010598	MTRF1 (ENSDNOG00000034196)	NAA16 (ENSDNOG00000004473) ##22
Platypus	MODERN SPECIES	12	ATP11A (ENSOANG00000015641)	TUBGCP3 (ENSOANG00000015642)	ENSOANG00000015644	GAS6 (ENSOANG00000015645)	ENSOANG00000039015	RASA3 (ENSOANG00000039021)	ENSOANG00000022457	TXNDC9 (ENSOANG00000005821)	EIF5B (ENSOANG00000004621)	REV1 (ENSOANG00000004622)	AFF3 (ENSOANG00000004623)	ENSOANG00000030060	RPL31 (ENSOANG00000045643)	TBC1D8 (ENSOANG00000004625)	ENSOANG00000037479	NAA16 (ENSOANG00000004627) ##22	RGCC (ENSOANG00000004628)	VWA8 (ENSOANG00000004629)	DGKH (ENSOANG00000004633)	AKAP11 (ENSOANG00000039050)	TNFSF11 (ENSOANG00000004642)	ENSOANG00000031313	ENOX1 (ENSOANG00000004643)	CHST10 (ENSOANG00000021450)	PDCL3 (ENSOANG00000005794)	NPAS2 (ENSOANG00000002626)	CCDC122 (ENSOANG00000030301)	ARHGAP20 (ENSOANG00000006239)	ENSOANG00000044146	ENSOANG00000039432	RDX (ENSOANG00000006241)
Sauria	ANCESTRAL SPECIES	2	ENSGT01030000235363	ENSGT00940000155079.b	ENSGT00940000156743	ENSGT00940000155487	ENSGT00940000157767	ENSGT00940000156894	ENSGT00900000143708	ENSGT00940000155454	ENSGT00940000155219	ENSGT00480000042679.b.b	ENSGT00390000013700	ENSGT00940000157039.b	ENSGT00390000013956	ENSGT00990000203769	ENSGT00940000156877	ENSGT00950000183174.B.b ##22	ENSGT00390000011709	ENSGT00390000006601	ENSGT00940000158106	ENSGT00940000153313.B	ENSGT01070000253816.a.a.b	ENSGT00940000154512	ENSGT00390000013820	ENSGT00940000159907	ENSGT00390000006788.a.b	ENSGT00390000005130	ENSGT00390000000693	ENSGT00940000162467.b	ENSGT00940000163647	ENSGT00940000166021	ENSGT00390000003758
Archelosauria	ANCESTRAL SPECIES		ENSGT00940000155079.b	ENSGT00940000156743	ENSGT00940000155487	ENSGT00940000157767	ENSGT01030000235378	ENSGT00940000156894	ENSGT00900000143708	ENSGT00940000155454	ENSGT00940000155219	ENSGT00480000042679.b.b	ENSGT00390000013700	ENSGT00940000157039.b	ENSGT00390000013956	ENSGT00990000203769	ENSGT00940000156877	ENSGT00950000183174.B.b ##22	ENSGT00390000011709	ENSGT00390000006601	ENSGT00940000158106	ENSGT00940000153313.B	ENSGT01070000253816.a.a.b	ENSGT00940000154512	ENSGT00390000013820	ENSGT00940000159907	ENSGT00390000006788.a.b	ENSGT00390000005130	ENSGT00390000000693	ENSGT00940000162467.b	ENSGT00940000163647	ENSGT00940000166021	ENSGT00390000003758
Archosauria	ANCESTRAL SPECIES	2	ENSGT00390000001134.a.a	ENSGT00940000160425	ENSGT00940000155079.b	ENSGT00940000156743	ENSGT00940000155487	ENSGT00940000157767	ENSGT01030000235378	ENSGT00940000156894	ENSGT00940000155454	ENSGT00940000155219	ENSGT00480000042679.b.b	ENSGT00390000013700	ENSGT00940000157039.b	ENSGT00390000013956	ENSGT00940000156877	ENSGT00950000183174.B.b ##22	ENSGT00390000011709	ENSGT00390000006601	ENSGT00940000158106	ENSGT00940000153313.B	ENSGT01070000253816.a.a.b	ENSGT00390000013820	ENSGT00940000159907	ENSGT00390000006788.a.b	ENSGT00390000005130	ENSGT00390000000693	ENSGT00940000162467.b	ENSGT00940000163647	ENSGT00940000166021	ENSGT00390000003758	ENSGT00940000163575
Aves	ANCESTRAL SPECIES		ENSGT00940000160425	ENSGT00940000155079.b	ENSGT00940000156743	ENSGT00940000155487	ENSGT00940000157767	ENSGT01030000235378	ENSGT00940000156894	ENSGT00940000155454	ENSGT00940000155219	ENSGT00480000042679.b.b	ENSGT00390000013700	ENSGT01040000244746	ENSGT00940000157039.b	ENSGT00390000013956	ENSGT00940000156877	ENSGT00950000183174.B.b ##22	ENSGT00390000011709	ENSGT00390000006601	ENSGT00940000158106	ENSGT00940000153313.B	ENSGT01070000253816.a.a.b	ENSGT00390000013820	ENSGT00940000159907	ENSGT00390000006788.a.b	ENSGT00390000005130	ENSGT00390000000693	ENSGT00940000163647	ENSGT00940000166021	ENSGT00390000003758	ENSGT00940000163575	ENSGT00940000159552
Neognathae	ANCESTRAL SPECIES	1	ENSGT00940000160425	ENSGT00940000155079.b	ENSGT00940000156743	ENSGT00940000155487	ENSGT00940000157767	ENSGT01030000235378	ENSGT00940000156894	ENSGT00940000155454	ENSGT00940000155219	ENSGT00480000042679.b.b	ENSGT00390000013700	ENSGT01040000244746	ENSGT00940000157039.b	ENSGT00390000013956	ENSGT00940000156877	ENSGT00950000183174.B.b ##22	ENSGT00390000011709	ENSGT00390000006601	ENSGT00940000158106	ENSGT00940000153313.B	ENSGT01070000253816.a.a.b	ENSGT00390000013820	ENSGT00940000159907	ENSGT00390000006788.a.b	ENSGT00390000005130	ENSGT00390000000693	ENSGT00940000163647	ENSGT00940000166021	ENSGT00390000003758	ENSGT00940000163575	ENSGT00940000159552
Neognathae_b	ANCESTRAL SPECIES		ENSGT00940000160425	ENSGT00940000155079.b	ENSGT00940000156743	ENSGT00940000155487	ENSGT00940000157767	ENSGT01030000235378	ENSGT00940000156894	ENSGT00940000155454	ENSGT00940000155219	ENSGT00480000042679.b.b	ENSGT00390000013700	ENSGT01040000244746	ENSGT00940000157039.b	ENSGT00390000013956	ENSGT00940000156877	ENSGT00950000183174.B.b ##22	ENSGT00390000011709	ENSGT00390000006601	ENSGT00940000158106	ENSGT00940000153313.B	ENSGT01070000253816.a.a.b	ENSGT00390000013820	ENSGT00940000159907	ENSGT00390000006788.a.b	ENSGT00390000005130	ENSGT00390000000693	ENSGT00940000163647	ENSGT00940000166021	ENSGT00390000003758	ENSGT00940000163575	ENSGT00390000016051
Neognathae_c	ANCESTRAL SPECIES	11	ENSGT00390000001134.a.a	ENSGT00940000160425	ENSGT00940000155079.b	ENSGT00940000156743	ENSGT00940000155487	ENSGT00940000157767	ENSGT01030000235378	ENSGT00940000156894	ENSGT00940000155454	ENSGT00940000155219	ENSGT00480000042679.b.b	ENSGT00390000013700	ENSGT00940000157039.b	ENSGT00390000013956	ENSGT00940000156877	ENSGT00950000183174.B.b ##22	ENSGT00390000011709	ENSGT00390000006601	ENSGT00940000158106	ENSGT00940000153313.B	ENSGT01070000253816.a.a.b	ENSGT00390000013820	ENSGT00940000159907	ENSGT00390000006788.a.b	ENSGT00390000005130	ENSGT00390000000693	ENSGT00940000166021	ENSGT00390000003758	ENSGT00940000163575	ENSGT00390000016051	ENSGT00940000159552
Golden eagle	MODERN SPECIES	5	ENSACCG00020014977	ENSACCG00020014983	PCDH20 (ENSACCG00020014993)	TDRD3 (ENSACCG00020015002)	DIAPH3 (ENSACCG00020015052)	ENSACCG00020015112	PCDH17 (ENSACCG00020015125)	OLFM4 (ENSACCG00020015144)	PCDH8 (ENSACCG00020015161)	CNMD (ENSACCG00020015177)	SUGT1 (ENSACCG00020015201)	ELF1 (ENSACCG00020015224)	WBP4 (ENSACCG00020015243)	MTRF1 (ENSACCG00020015274)	ENSACCG00020015285	NAA16 (ENSACCG00020015320) ##22	RGCC (ENSACCG00020015343)	VWA8 (ENSACCG00020015386)	DGKH (ENSACCG00020015448)	AKAP11 (ENSACCG00020015487)	TNFSF11 (ENSACCG00020015505)	ENSACCG00020015518	DNAJC15 (ENSACCG00020015524)	ENOX1 (ENSACCG00020015543)	CCDC122 (ENSACCG00020015565)	LACC1 (ENSACCG00020015577)	ENSACCG00020015612	NUFIP1 (ENSACCG00020015631)	GPALPP1 (ENSACCG00020015644)	GTF2F2 (ENSACCG00020015664)	KCTD4 (ENSACCG00020015681)
Kakapo	MODERN SPECIES	11	ENSSHBG00005003843	ENSSHBG00005003849	PCDH20 (ENSSHBG00005003855)	TDRD3 (ENSSHBG00005003863)	DIAPH3 (ENSSHBG00005003891)	ENSSHBG00005003924	ENSSHBG00005003943	PCDH17 (ENSSHBG00005003958)	OLFM4 (ENSSHBG00005003996)	PCDH8 (ENSSHBG00005004003)	CNMD (ENSSHBG00005004010)	SUGT1 (ENSSHBG00005004023)	ELF1 (ENSSHBG00005004033)	WBP4 (ENSSHBG00005004096)	MTRF1 (ENSSHBG00005004118)	NAA16 (ENSSHBG00005004130) ##22	RGCC (ENSSHBG00005004142)	VWA8 (ENSSHBG00005004472)	DGKH (ENSSHBG00005007915)	AKAP11 (ENSSHBG00005007930)	TNFSF11 (ENSSHBG00005007943)	DNAJC15 (ENSSHBG00005007958)	ENOX1 (ENSSHBG00005007972)	CCDC122 (ENSSHBG00005007991)	LACC1 (ENSSHBG00005008008)	ENSSHBG00005008015	ENSSHBG00005008048	NUFIP1 (ENSSHBG00005008070)	GPALPP1 (ENSSHBG00005008087)	GTF2F2 (ENSSHBG00005008110)	TPT1 (ENSSHBG00005008145)
Passeriformes	ANCESTRAL SPECIES	1	ENSGT00940000155079.b	ENSGT00940000156743	ENSGT00940000155487	ENSGT00940000157767	ENSGT01030000235378	ENSGT00940000156894	ENSGT00940000155454	ENSGT00940000155219	ENSGT00480000042679.b.b	ENSGT00390000013700	ENSGT01040000244746	ENSGT00940000157039.b	ENSGT00390000013956	ENSGT00940000156877	ENSGT01030000237957	ENSGT00950000183174.B.b ##22	ENSGT00390000011709	ENSGT00390000006601	ENSGT00940000158106	ENSGT00940000153313.B	ENSGT01070000253816.a.a.b	ENSGT00390000013820	ENSGT00940000159907	ENSGT00390000006788.a.b	ENSGT00390000005130	ENSGT00390000000693	ENSGT00940000163647	ENSGT00940000166021	ENSGT00390000003758	ENSGT00940000163575	ENSGT00390000016051
Passeriformes_d	ANCESTRAL SPECIES	1	ENSGT00940000155079.b	ENSGT00940000156743	ENSGT00940000155487	ENSGT00940000157767	ENSGT01030000235378	ENSGT00940000156894	ENSGT00940000155454	ENSGT00940000155219	ENSGT00480000042679.b.b	ENSGT00390000013700	ENSGT01040000244746	ENSGT00940000157039.b	ENSGT00390000013956	ENSGT00940000156877	ENSGT01030000237957	ENSGT00950000183174.B.b ##22	ENSGT00390000011709	ENSGT00390000006601	ENSGT00940000158106	ENSGT00940000153313.B	ENSGT01070000253816.a.a.b	ENSGT00390000013820	ENSGT00940000159907.t	ENSGT00390000006788.a.b	ENSGT00390000005130	ENSGT00390000000693	ENSGT00940000163647	ENSGT00940000166021	ENSGT00390000003758	ENSGT00940000163575	ENSGT00390000016051
Flycatcher	MODERN SPECIES		PCDH20 (ENSFALG00000014411)	TDRD3 (ENSFALG00000007927)	DIAPH3 (ENSFALG00000007940)	ENSFALG00000025639	PCDH17 (ENSFALG00000007975)	ENSFALG00000028139	OLFM4 (ENSFALG00000007977)	PCDH8 (ENSFALG00000007982)	CNMD (ENSFALG00000025412)	SUGT1 (ENSFALG00000022997)	ENSFALG00000026658	ELF1 (ENSFALG00000008008)	WBP4 (ENSFALG00000008022)	MTRF1 (ENSFALG00000008036)	ENSFALG00000028279	NAA16 (ENSFALG00000008048) ##22	RGCC (ENSFALG00000027799)	ENSFALG00000024593	VWA8 (ENSFALG00000008073)	DGKH (ENSFALG00000008106)	AKAP11 (ENSFALG00000028283)	TNFSF11 (ENSFALG00000027225)	EPSTI1 (ENSFALG00000008123)	DNAJC15 (ENSFALG00000028222)	ENOX1 (ENSFALG00000008134)	CCDC122 (ENSFALG00000026793)	LACC1 (ENSFALG00000008143)	TSC22D1 (ENSFALG00000008145)	NUFIP1 (ENSFALG00000024457)	GPALPP1 (ENSFALG00000027021)	GTF2F2 (ENSFALG00000028328)
Passeriformes_g	ANCESTRAL SPECIES	2	ENSGT00940000160425	ENSGT00940000155079.b	ENSGT00940000156743	ENSGT00940000155487	ENSGT00940000157767	ENSGT01030000235378	ENSGT00940000156894	ENSGT00940000155454	ENSGT00940000155219	ENSGT00480000042679.b.b	ENSGT00390000013700	ENSGT00940000157039.b	ENSGT00390000013956	ENSGT00940000156877	ENSGT01030000237957	ENSGT00950000183174.B.b ##22	ENSGT00390000011709	ENSGT00390000006601	ENSGT00940000158106	ENSGT00940000153313.B	ENSGT01070000253816.a.a.b	ENSGT00390000013820	ENSGT00940000159907.t	ENSGT00390000006788.a.b	ENSGT00390000005130	ENSGT00390000000693	ENSGT00940000163647	ENSGT00940000166021	ENSGT00390000003758	ENSGT00940000163575	ENSGT00940000159552
Passeroidea	ANCESTRAL SPECIES	5	ENSGT00940000160425	ENSGT00940000155079.b	ENSGT00940000156743	ENSGT00940000155487	ENSGT00940000157767	ENSGT01030000235378	ENSGT00940000156894	ENSGT00940000155454	ENSGT00940000155219	ENSGT00480000042679.b.b	ENSGT00390000013700	ENSGT00940000157039.b	ENSGT00390000013956	ENSGT00940000156877	ENSGT01030000237957	ENSGT00950000183174.B.b ##22	ENSGT00390000011709	ENSGT00390000006601	ENSGT00940000158106	ENSGT00940000153313.B	ENSGT01070000253816.a.a.b	ENSGT00390000013820	ENSGT00940000159907.t	ENSGT00390000006788.a.b	ENSGT00390000005130	ENSGT00390000000693	ENSGT00940000163647	ENSGT00940000166021	ENSGT00390000003758	ENSGT00940000163575	ENSGT00390000016051
Common canary	MODERN SPECIES	4	ENSSCAG00000015072	ENSSCAG00000015057	ENSSCAG00000015047	PCDH20 (ENSSCAG00000015037)	TDRD3 (ENSSCAG00000015022)	DIAPH3 (ENSSCAG00000014569)	ENSSCAG00000014460	PCDH17 (ENSSCAG00000014457)	OLFM4 (ENSSCAG00000014453)	PCDH8 (ENSSCAG00000014451)	CNMD (ENSSCAG00000014448)	SUGT1 (ENSSCAG00000014446)	ELF1 (ENSSCAG00000014441)	WBP4 (ENSSCAG00000014439)	MTRF1 (ENSSCAG00000014435)	NAA16 (ENSSCAG00000014433) ##22	RGCC (ENSSCAG00000014431)	VWA8 (ENSSCAG00000014421)	DGKH (ENSSCAG00000013975)	AKAP11 (ENSSCAG00000013822)	TNFSF11 (ENSSCAG00000013817)	ENSSCAG00000013809	DNAJC15 (ENSSCAG00000013807)	ENOX1 (ENSSCAG00000013800)	CCDC122 (ENSSCAG00000013780)	LACC1 (ENSSCAG00000013774)	ENSSCAG00000013770	ENSSCAG00000013767	NUFIP1 (ENSSCAG00000013762)	GPALPP1 (ENSSCAG00000013759)	KCTD4 (ENSSCAG00000013749)
Zebra finch	MODERN SPECIES		PCDH9 (ENSTGUG00000012486)	PCDH20 (ENSTGUG00000012481)	TDRD3 (ENSTGUG00000012476)	DIAPH3 (ENSTGUG00000012460)	ENSTGUG00000026039	PCDH17 (ENSTGUG00000012457)	ENSTGUG00000028083	OLFM4 (ENSTGUG00000025069)	PCDH8 (ENSTGUG00000012453)	CNMD (ENSTGUG00000012448)	SUGT1 (ENSTGUG00000024443)	ELF1 (ENSTGUG00000012438)	WBP4 (ENSTGUG00000023820)	MTRF1 (ENSTGUG00000012422)	ENSTGUG00000023056	NAA16 (ENSTGUG00000012418) ##22	VWA8 (ENSTGUG00000012398)	DGKH (ENSTGUG00000012377)	AKAP11 (ENSTGUG00000018872)	TNFSF11 (ENSTGUG00000025888)	EPSTI1 (ENSTGUG00000012366)	ENSTGUG00000024533	ENOX1 (ENSTGUG00000012357)	CCDC122 (ENSTGUG00000022901)	LACC1 (ENSTGUG00000012353)	ENSTGUG00000028881	NUFIP1 (ENSTGUG00000012321)	GPALPP1 (ENSTGUG00000012338)	GTF2F2 (ENSTGUG00000012334)	KCTD4 (ENSTGUG00000022029)	TPT1 (ENSTGUG00000012322)
Medium ground finch	MODERN SPECIES	25								ENSGFOG00000011420	OLFM4 (ENSGFOG00000011424)	PCDH8 (ENSGFOG00000011427)	CNMD (ENSGFOG00000011432)	SUGT1 (ENSGFOG00000011441)	ELF1 (ENSGFOG00000011454)	WBP4 (ENSGFOG00000011468)	MTRF1 (ENSGFOG00000011488)	NAA16 (ENSGFOG00000011498) ##22	VWA8 (ENSGFOG00000011517)	DGKH (ENSGFOG00000011568)	AKAP11 (ENSGFOG00000011744)	TNFSF11 (ENSGFOG00000011755)	DNAJC15 (ENSGFOG00000011773)	ENOX1 (ENSGFOG00000011780)	CCDC122 (ENSGFOG00000011793)	LACC1 (ENSGFOG00000011807)	ENSGFOG00000011814	ENSGFOG00000011822	NUFIP1 (ENSGFOG00000011829)	GPALPP1 (ENSGFOG00000011840)	GTF2F2 (ENSGFOG00000011848)	KCTD4 (ENSGFOG00000011857)	TPT1 (ENSGFOG00000011861)
Great tit	MODERN SPECIES		ENSPMJG00000013786	ENSPMJG00000013806	PCDH20 (ENSPMJG00000013836)	TDRD3 (ENSPMJG00000013853)	DIAPH3 (ENSPMJG00000013874)	ENSPMJG00000014859	PCDH17 (ENSPMJG00000014860)	OLFM4 (ENSPMJG00000014868)	PCDH8 (ENSPMJG00000014869)	CNMD (ENSPMJG00000014870)	SUGT1 (ENSPMJG00000014871)	ELF1 (ENSPMJG00000014872)	WBP4 (ENSPMJG00000014873)	MTRF1 (ENSPMJG00000014874)	ENSPMJG00000014875	NAA16 (ENSPMJG00000014876) ##22	RGCC (ENSPMJG00000014877)	VWA8 (ENSPMJG00000014878)	DGKH (ENSPMJG00000014879)	AKAP11 (ENSPMJG00000014880)	TNFSF11 (ENSPMJG00000014883)	EPSTI1 (ENSPMJG00000014885)	DNAJC15 (ENSPMJG00000014886)	ENOX1 (ENSPMJG00000014887)	CCDC122 (ENSPMJG00000014888)	LACC1 (ENSPMJG00000014889)	ENSPMJG00000014893	ENSPMJG00000014894	ENSPMJG00000014897	GPALPP1 (ENSPMJG00000014898)	GTF2F2 (ENSPMJG00000014899)
Galloanserae	ANCESTRAL SPECIES	1	ENSGT00390000001134.a.a	ENSGT00940000160425	ENSGT00940000155079.b	ENSGT00940000156743	ENSGT00940000155487	ENSGT00940000157767	ENSGT01030000235378	ENSGT00940000156894	ENSGT00940000155454	ENSGT00940000155219	ENSGT00480000042679.b.b	ENSGT00390000013700	ENSGT00940000157039.b	ENSGT00390000013956	ENSGT00940000156877	ENSGT00950000183174.B.b ##22	ENSGT00390000011709	ENSGT00390000006601	ENSGT00940000158106	ENSGT00940000153313.B	ENSGT01070000253816.a.a.b	ENSGT01090000261481	ENSGT00390000013820	ENSGT00940000159907	ENSGT00390000006788.a.b	ENSGT00390000005130	ENSGT00390000000693	ENSGT00940000163647	ENSGT00940000166021	ENSGT00390000003758	ENSGT00940000163575
Anatidae	ANCESTRAL SPECIES	16			ENSGT00940000156743	ENSGT00940000155487	ENSGT00940000157767	ENSGT01030000235378	ENSGT00940000156894	ENSGT00900000143708	ENSGT00940000155454	ENSGT00940000155219	ENSGT00480000042679.b.b	ENSGT00390000013700	ENSGT00940000157039.b	ENSGT00390000013956	ENSGT00940000156877	ENSGT00950000183174.B.b ##22	ENSGT00390000011709	ENSGT00390000006601	ENSGT00940000158106	ENSGT00940000153313.B	ENSGT01070000253816.a.a.b	ENSGT01090000261481	ENSGT00390000013820	ENSGT00940000159907	ENSGT00390000006788.a.b	ENSGT00390000005130	ENSGT00390000000693	ENSGT00940000166021	ENSGT00390000003758	ENSGT00940000163575	ENSGT00940000159552
Pink-footed goose	MODERN SPECIES	86									OLFM4 (ENSABRG00000003627)	PCDH8 (ENSABRG00000003637)	CNMD (ENSABRG00000003647)	SUGT1 (ENSABRG00000003660)	ELF1 (ENSABRG00000003673)	WBP4 (ENSABRG00000003700)	MTRF1 (ENSABRG00000003716)	NAA16 (ENSABRG00000003737) ##22	RGCC (ENSABRG00000003765)	VWA8 (ENSABRG00000003780)	DGKH (ENSABRG00000003834)	AKAP11 (ENSABRG00000003947)	TNFSF11 (ENSABRG00000003983)	EPSTI1 (ENSABRG00000003988)	DNAJC15 (ENSABRG00000004012)	ENOX1 (ENSABRG00000004056)	LACC1 (ENSABRG00000004118)	CCDC122 (ENSABRG00000004125)	ENSABRG00000004172
Duck	MODERN SPECIES		ENSAPLG00000001157	ENSAPLG00000026299	ENSAPLG00000001142	ENSAPLG00000030357	PCDH20 (ENSAPLG00000001315)	TDRD3 (ENSAPLG00000014316)	DIAPH3 (ENSAPLG00000013619)	ENSAPLG00000024312	PCDH17 (ENSAPLG00000014071)	OLFM4 (ENSAPLG00000028342)	PCDH8 (ENSAPLG00000027530)	CNMD (ENSAPLG00000024638)	SUGT1 (ENSAPLG00000007765)	ELF1 (ENSAPLG00000008134)	WBP4 (ENSAPLG00000009035)	NAA16 (ENSAPLG00000009514) ##22	RGCC (ENSAPLG00000009930)	VWA8 (ENSAPLG00000010804)	DGKH (ENSAPLG00000011129)	AKAP11 (ENSAPLG00000016841)	TNFSF11 (ENSAPLG00000005413)	ENSAPLG00000005407	EPSTI1 (ENSAPLG00000005382)	ENSAPLG00000025751	ENOX1 (ENSAPLG00000005204)	KLHL1 (ENSAPLG00000002429)	DACH1 (ENSAPLG00000012935)	MZT1 (ENSAPLG00000021793)	BORA (ENSAPLG00000012807)	DIS3 (ENSAPLG00000012686)	PIBF1 (ENSAPLG00000004063)
Phasianidae	ANCESTRAL SPECIES		ENSGT00390000001134.a.a	ENSGT00940000160425	ENSGT00940000155079.b.yc.a	ENSGT00940000156743	ENSGT00940000155487	ENSGT00940000157767	ENSGT01030000235378	ENSGT00940000156894	ENSGT00940000155454	ENSGT00940000155219	ENSGT00480000042679.b.b	ENSGT00390000013700	ENSGT00940000157039.b	ENSGT00390000013956	ENSGT00940000156877	ENSGT00950000183174.B.b ##22	ENSGT00390000011709	ENSGT00390000006601	ENSGT00940000158106	ENSGT00940000153313.B	ENSGT01070000253816.a.a.b	ENSGT01090000261481	ENSGT00390000013820	ENSGT00940000159907	ENSGT00390000006788.a.b	ENSGT00390000005130	ENSGT00390000000693	ENSGT00940000163647	ENSGT00940000166021	ENSGT00390000003758	ENSGT00940000163575
Phasianidae_b	ANCESTRAL SPECIES		ENSGT00390000001134.a.a	ENSGT00940000160425	ENSGT00940000155079.b.yc.a	ENSGT00940000156743	ENSGT00940000155487	ENSGT00940000157767	ENSGT01030000235378	ENSGT00940000156894	ENSGT00940000155454	ENSGT00940000155219	ENSGT00480000042679.b.b	ENSGT00390000013700	ENSGT00940000157039.b	ENSGT00390000013956	ENSGT00940000156877	ENSGT00950000183174.B.b ##22	ENSGT00390000011709	ENSGT00390000006601	ENSGT00940000158106	ENSGT00940000153313.B	ENSGT01070000253816.a.a.b	ENSGT01090000261481	ENSGT00390000013820	ENSGT00940000159907	ENSGT00390000006788.a.b	ENSGT00390000005130	ENSGT00390000000693	ENSGT00940000163647	ENSGT00940000166021	ENSGT00390000003758	ENSGT00940000163575
Chicken	MODERN SPECIES		DACH1 (ENSGALG00010000870)	KLHL1 (ENSGALG00010000876)	PCDH9 (ENSGALG00010000901)	PCDH20 (ENSGALG00010000715)	TDRD3 (ENSGALG00010002381)	DIAPH3 (ENSGALG00010002406)	ENSGALG00010002412	PCDH17 (ENSGALG00010002415)	OLFM4 (ENSGALG00010002967)	PCDH8 (ENSGALG00010002987)	LECT1 (ENSGALG00010002998)	SUGT1 (ENSGALG00010003024)	ELF1 (ENSGALG00010003072)	WBP4 (ENSGALG00010003113)	MTRF1 (ENSGALG00010003169)	NAA16 (ENSGALG00010003183) ##22	RGCC (ENSGALG00010003192)	VWA8 (ENSGALG00010003246)	DGKH (ENSGALG00010003254)	AKAP11 (ENSGALG00010003271)	TNFSF11 (ENSGALG00010003276)	ENSGALG00010003283	ENSGALG00010003293	EPSTI1 (ENSGALG00010003331)	DNAJC15 (ENSGALG00010003358)	ENOX1 (ENSGALG00010003372)	LACC1 (ENSGALG00010003432)	CCDC122 (ENSGALG00010003461)	TSC22D1 (ENSGALG00010003466)	ENSGALG00010004728	ENSGALG00010003495
Turkey	MODERN SPECIES		ENSMGAG00000014987	ENSMGAG00000014986	ENSMGAG00000018208	ENSMGAG00000017353	ENSMGAG00000014982	ENSMGAG00000014981	ENSMGAG00000020535	ENSMGAG00000014980	ENSMGAG00000014978	ENSMGAG00000019324	ENSMGAG00000014976	ENSMGAG00000014975	ENSMGAG00000022612	ENSMGAG00000014974	ENSMGAG00000022914	ENSMGAG00000014972 ##22	ENSMGAG00000014971	ENSMGAG00000014970	ENSMGAG00000018775	ENSMGAG00000014969	SUGT1 (ENSMGAG00000014968)	ENSMGAG00000014967	ENSMGAG00000014966	ENSMGAG00000014965	RNF169 (ENSMGAG00000019895)	ENSMGAG00000015296	SPCS2 (ENSMGAG00000022693)	ENSMGAG00000014699	ENSMGAG00000015120	ENSMGAG00000015119	ENSMGAG00000020745
Japanese quail	MODERN SPECIES		ENSCJPG00005019605	ENSCJPG00005019607	PCDH20 (ENSCJPG00005019611)	TDRD3 (ENSCJPG00005019613)	DIAPH3 (ENSCJPG00005019618)	PCDH17 (ENSCJPG00005019664)	ENSCJPG00005019668	ENSCJPG00005019669	OLFM4 (ENSCJPG00005019679)	PCDH8 (ENSCJPG00005019680)	CNMD (ENSCJPG00005019681)	SUGT1 (ENSCJPG00005019682)	ELF1 (ENSCJPG00005019683)	WBP4 (ENSCJPG00005019684)	MTRF1 (ENSCJPG00005019685)	NAA16 (ENSCJPG00005019686) ##22	RGCC (ENSCJPG00005019688)	VWA8 (ENSCJPG00005019697)	DGKH (ENSCJPG00005019705)	AKAP11 (ENSCJPG00005019706)	TNFSF11 (ENSCJPG00005019710)	ENSCJPG00005019712	EPSTI1 (ENSCJPG00005019713)	DNAJC15 (ENSCJPG00005019714)	ENOX1 (ENSCJPG00005019716)	LACC1 (ENSCJPG00005019718)	CCDC122 (ENSCJPG00005019719)	ENSCJPG00005019723	ENSCJPG00005019724	NUFIP1 (ENSCJPG00005019727)	GPALPP1 (ENSCJPG00005019728)
African ostrich	MODERN SPECIES	525		PCDH20 (ENSSCUG00000003970)	TDRD3 (ENSSCUG00000003964)	ENSSCUG00000003961	DIAPH3 (ENSSCUG00000003937)	ENSSCUG00000003919	PCDH17 (ENSSCUG00000003918)	OLFM4 (ENSSCUG00000003907)	CNMD (ENSSCUG00000003896)	SUGT1 (ENSSCUG00000003883)	ENSSCUG00000003879	ELF1 (ENSSCUG00000003875)	WBP4 (ENSSCUG00000003872)	MTRF1 (ENSSCUG00000003869)	ENSSCUG00000003866	NAA16 (ENSSCUG00000003858) ##22	RGCC (ENSSCUG00000003829)	VWA8 (ENSSCUG00000003815)	DGKH (ENSSCUG00000003794)	AKAP11 (ENSSCUG00000003790)	TNFSF11 (ENSSCUG00000003789)	EPSTI1 (ENSSCUG00000003786)	DNAJC15 (ENSSCUG00000003785)	ENOX1 (ENSSCUG00000003783)
Australian saltwater crocodile	MODERN SPECIES	27	PCDH20 (ENSCPRG00005018735)	TDRD3 (ENSCPRG00005018753)	DIAPH3 (ENSCPRG00005018773)	PCDH17 (ENSCPRG00005018798)	ENSCPRG00005018800	ENSCPRG00005018803	ENSCPRG00005018806	ENSCPRG00005018810	OLFM4 (ENSCPRG00005018811)	PCDH8 (ENSCPRG00005018816)	CNMD (ENSCPRG00005018818)	SUGT1 (ENSCPRG00005018821)	ELF1 (ENSCPRG00005018823)	WBP4 (ENSCPRG00005018826)	MTRF1 (ENSCPRG00005018828)	NAA16 (ENSCPRG00005000330) ##22	RGCC (ENSCPRG00005000828)	VWA8 (ENSCPRG00005000978)	DGKH (ENSCPRG00005001063)	AKAP11 (ENSCPRG00005001078)	TNFSF11 (ENSCPRG00005001171)	EPSTI1 (ENSCPRG00005001259)	DNAJC15 (ENSCPRG00005001271)	ENOX1 (ENSCPRG00005001394)	CCDC122 (ENSCPRG00005001471)	LACC1 (ENSCPRG00005001487)	SERP2 (ENSCPRG00005001533)	ENSCPRG00005001536	ENSCPRG00005001575	NUFIP1 (ENSCPRG00005001604)	ENSCPRG00005001615
Cryptodira	ANCESTRAL SPECIES		ENSGT00660000095999	ENSGT00940000156743	ENSGT00940000155487	ENSGT00940000157767	ENSGT01030000235378	ENSGT00940000156894	ENSGT00900000143708	ENSGT00940000155454	ENSGT00940000155219	ENSGT00480000042679.b.b	ENSGT00390000013700	ENSGT00940000157039.b	ENSGT00390000013956	ENSGT00990000203769	ENSGT00940000156877	ENSGT00950000183174.B.b ##22	ENSGT00390000011709	ENSGT00390000006601	ENSGT00940000158106	ENSGT00940000153313.B	ENSGT01070000253816.a.a.b	ENSGT00940000154512	ENSGT00390000013820	ENSGT00940000159907	ENSGT00390000006788.a.b	ENSGT00390000005130	ENSGT00390000000693	ENSGT00940000162467.b	ENSGT00940000163647	ENSGT00940000166021	ENSGT00390000003758
Testudinoidea	ANCESTRAL SPECIES	1	ENSGT00940000155079.b	ENSGT00940000156743	ENSGT00940000155487	ENSGT00940000157767.h	ENSGT01030000235378	ENSGT00940000156894	ENSGT00900000143708	ENSGT00940000155454.s.a	ENSGT00940000155219	ENSGT00480000042679.b.b	ENSGT00390000013700	ENSGT00940000157039.b	ENSGT00390000013956	ENSGT00990000203769	ENSGT00940000156877	ENSGT00950000183174.B.b ##22	ENSGT00390000011709	ENSGT00390000006601	ENSGT00940000158106	ENSGT00940000153313.B	ENSGT01070000253816.a.a.b	ENSGT00940000154512	ENSGT00390000013820	ENSGT00940000159907	ENSGT00390000006788.a.b	ENSGT00390000005130	ENSGT00390000000693	ENSGT00940000162467.b	ENSGT00940000163647	ENSGT00940000166021	ENSGT00390000003758
Emydidae	ANCESTRAL SPECIES	63	ENSGT00940000155079.b	ENSGT00940000156743	ENSGT00940000155487	ENSGT00940000157767.h	ENSGT01030000235378	ENSGT00940000156894	ENSGT00900000143708	ENSGT00940000155454.s.a	ENSGT00940000155219	ENSGT00480000042679.b.b	ENSGT00390000013700	ENSGT00940000157039.b	ENSGT00390000013956	ENSGT00990000203769	ENSGT00940000156877	ENSGT00950000183174.B.b ##22	ENSGT00390000011709	ENSGT00390000006601	ENSGT00940000158106	ENSGT00940000153313.B	ENSGT01070000253816.a.a.b	ENSGT00940000154512	ENSGT00390000013820	ENSGT00940000159907	ENSGT00390000006788.a.b	ENSGT00390000000693	ENSGT00940000162467.b	ENSGT00940000163647	ENSGT00940000166021	ENSGT00390000003758	ENSGT00940000163575
Three-toed box turtle	DUPLICATION
Three-toed box turtle	MODERN SPECIES	2	ENSTMTG00000015365	ENSTMTG00000015341	ENSTMTG00000015130	ENSTMTG00000015099	ENSTMTG00000015093	ENSTMTG00000015080	ENSTMTG00000015074	ENSTMTG00000015049	ENSTMTG00000015042	ENSTMTG00000015019	ENSTMTG00000014966	ENSTMTG00000014918	ENSTMTG00000014905	ENSTMTG00000014897	ENSTMTG00000014883	ENSTMTG00000014849 ##22	ENSTMTG00000014836	ENSTMTG00000012069	ENSTMTG00000011679	ENSTMTG00000011355	ENSTMTG00000011311	ENSTMTG00000013365	ENSTMTG00000013347	ENSTMTG00000013337	ENSTMTG00000013330	ENSTMTG00000013296	ENSTMTG00000013271	ENSTMTG00000013255	ENSTMTG00000013242	ENSTMTG00000013229	ENSTMTG00000013191
Three-toed box turtle	MODERN SPECIES	1	ENSTMTG00000007556	ENSTMTG00000007537	ENSTMTG00000007512	ENSTMTG00000007033	ENSTMTG00000006982	ENSTMTG00000006955	ENSTMTG00000006944	ENSTMTG00000006902	ENSTMTG00000006840	ENSTMTG00000006789	ENSTMTG00000006734	ENSTMTG00000006712	ENSTMTG00000006691	ENSTMTG00000006679	ENSTMTG00000006660	ENSTMTG00000005913 ##22	ENSTMTG00000005824	ENSTMTG00000002353	ENSTMTG00000002046	ENSTMTG00000001710	ENSTMTG00000001612	ENSTMTG00000001603	ENSTMTG00000001591	ENSTMTG00000001585	ENSTMTG00000001580	ENSTMTG00000001563	ENSTMTG00000001552	ENSTMTG00000001537	ENSTMTG00000001527	ENSTMTG00000001520	ENSTMTG00000001513
painted turtle	MODERN SPECIES		TAB3 (ENSCPBG00000007424)	ENSCPBG00000007464	ENSCPBG00000007838	PLCL1 (ENSCPBG00000007848)	ENSCPBG00000007878	ENSCPBG00000007882	PCDH17 (ENSCPBG00000007892)	ENSCPBG00000007894	ENSCPBG00000007903	CNMD (ENSCPBG00000007913)	SUGT1 (ENSCPBG00000007923)	ELF1 (ENSCPBG00000007936)	WBP4 (ENSCPBG00000007957)	ENSCPBG00000007965	MTRF1 (ENSCPBG00000007969)	NAA16 (ENSCPBG00000007986) ##22	RGCC (ENSCPBG00000008004)	VWA8 (ENSCPBG00000008021)	LACC1 (ENSCPBG00000008044)	SERP2 (ENSCPBG00000008055)	ENSCPBG00000008064	NUFIP1 (ENSCPBG00000008069)	GPALPP1 (ENSCPBG00000008078)	GTF2F2 (ENSCPBG00000008086)	KCTD4 (ENSCPBG00000008094)	ENSCPBG00000008104	SLC25A30 (ENSCPBG00000008116)	COG3 (ENSCPBG00000008129)	ENSCPBG00000008168	ENSCPBG00000008175	SIAH3 (ENSCPBG00000008182)
Testudinidae	ANCESTRAL SPECIES		ENSGT00940000155079.b	ENSGT00940000156743	ENSGT00940000155487	ENSGT00940000157767.h	ENSGT00950000185064	ENSGT01030000235378	ENSGT00940000156894	ENSGT00900000143708	ENSGT00940000155454.s.a	ENSGT00940000155219	ENSGT00480000042679.b.b	ENSGT00390000013700	ENSGT00940000157039.b	ENSGT00390000013956	ENSGT00940000156877	ENSGT00950000183174.B.b ##22	ENSGT00390000011709	ENSGT00390000006601	ENSGT00940000158106	ENSGT00940000153313.B	ENSGT01070000253816.a.a.b	ENSGT00940000154512	ENSGT00390000013820	ENSGT00940000159907	ENSGT00390000006788.a.b	ENSGT00390000005130	ENSGT00390000000693	ENSGT00940000162467.b	ENSGT00940000163647	ENSGT00940000166021	ENSGT00390000003758
Goode s thornscrub tortoise	MODERN SPECIES		ENSGEVG00005008233	ENSGEVG00005008229	PCDH17 (ENSGEVG00005008197)	ENSGEVG00005008177	ENSGEVG00005008154	ENSGEVG00005008129	ENSGEVG00005008103	ENSGEVG00005008068	ENSGEVG00005008030	CNMD (ENSGEVG00005007940)	SUGT1 (ENSGEVG00005007891)	ELF1 (ENSGEVG00005007874)	ENSGEVG00005007850	WBP4 (ENSGEVG00005007828)	MTRF1 (ENSGEVG00005007806)	NAA16 (ENSGEVG00005007739) ##22	RGCC (ENSGEVG00005007709)	VWA8 (ENSGEVG00005007641)	DGKH (ENSGEVG00005007555)	AKAP11 (ENSGEVG00005007525)	TNFSF11 (ENSGEVG00005007495)	ENSGEVG00005007464	EPSTI1 (ENSGEVG00005007445)	DNAJC15 (ENSGEVG00005007427)	ENOX1 (ENSGEVG00005007371)	CCDC122 (ENSGEVG00005007344)	LACC1 (ENSGEVG00005007327)	SERP2 (ENSGEVG00005007300)	ENSGEVG00005007278	NUFIP1 (ENSGEVG00005007250)	ENSGEVG00005007226
Abingdon island giant tortoise	MODERN SPECIES	513													ELF1 (ENSCABG00000000775)	WBP4 (ENSCABG00000000778)	ENSCABG00000000783	NAA16 (ENSCABG00000000785) ##22	RGCC (ENSCABG00000000793)	ENSCABG00000000821
Chinese turtle	MODERN SPECIES	1169									OLFM4 (ENSPSIG00000005097)	PCDH8 (ENSPSIG00000005419)	CNMD (ENSPSIG00000005454)	SUGT1 (ENSPSIG00000005655)	ELF1 (ENSPSIG00000006204)	WBP4 (ENSPSIG00000006270)	MTRF1 (ENSPSIG00000004773)	NAA16 (ENSPSIG00000005139) ##22	VWA8 (ENSPSIG00000005988)	ENSPSIG00000006588	ENSPSIG00000006696	AKAP11 (ENSPSIG00000006777)	TNFSF11 (ENSPSIG00000007115)	ENSPSIG00000007124	ENSPSIG00000001077	DNAJC15 (ENSPSIG00000007131)	ENOX1 (ENSPSIG00000007152)	CCDC122 (ENSPSIG00000007381)	LACC1 (ENSPSIG00000007488)	ENSPSIG00000007493	ENSPSIG00000001094	NUFIP1 (ENSPSIG00000007498)	ENSPSIG00000007503
Lepidosauria	ANCESTRAL SPECIES	40	ENSGT01030000235363	ENSGT00940000155079.a.a	ENSGT00940000156743	ENSGT00940000155487	ENSGT00940000157767	ENSGT00940000156894	ENSGT00900000143708	ENSGT00940000155454	ENSGT00940000155219	ENSGT00480000042679.b.b	ENSGT00390000013700	ENSGT00940000157039.b	ENSGT00390000013956	ENSGT00990000203769	ENSGT00940000156877	ENSGT00950000183174.B.b ##22	ENSGT00390000011709	ENSGT00390000006601	ENSGT00940000158106	ENSGT00940000153313.B	ENSGT01070000253816.a.a.b	ENSGT00940000154512	ENSGT00390000013820	ENSGT00940000159907	ENSGT00390000006788.a.b	ENSGT00390000005130	ENSGT00390000000693	ENSGT00940000163647	ENSGT00940000166021	ENSGT00390000003758	ENSGT00940000163575
Episquamata	ANCESTRAL SPECIES	2	ENSGT01030000235363	ENSGT00940000155079.a.a	ENSGT00940000156743	ENSGT00940000155487	ENSGT00940000157767	ENSGT00940000156894	ENSGT00900000143708	ENSGT00940000155454.r	ENSGT00940000155219	ENSGT00480000042679.b.b	ENSGT00390000013700	ENSGT00940000157039.b	ENSGT00390000013956	ENSGT00990000203769	ENSGT00940000156877	ENSGT00950000183174.B.b ##22	ENSGT00390000011709	ENSGT00390000006601	ENSGT00940000158106	ENSGT00940000153313.B	ENSGT01070000253816.a.a.b	ENSGT00940000154512	ENSGT00390000013820	ENSGT00940000159907	ENSGT00390000006788.a.b	ENSGT00390000005130	ENSGT00390000000693	ENSGT00940000163647	ENSGT00940000166021	ENSGT00390000003758	ENSGT00940000163575
Laterata	ANCESTRAL SPECIES		ENSGT00940000160425	ENSGT01030000235363	ENSGT00940000155079.a.a.c	ENSGT00940000156743	ENSGT00940000155487	ENSGT00940000157767	ENSGT00900000143708	ENSGT00940000156894	ENSGT00940000155454.r.a	ENSGT00940000155219	ENSGT00480000042679.b.b	ENSGT00390000013700	ENSGT00940000157039.b	ENSGT00390000013956	ENSGT00940000156877	ENSGT00950000183174.B.b ##22	ENSGT00390000011709	ENSGT00390000006601	ENSGT00940000158106	ENSGT00940000153313.B	ENSGT01070000253816.a.a.b	ENSGT00960000192339	ENSGT00390000013820	ENSGT00940000159907	ENSGT00390000006788.a.b	ENSGT00390000005130	ENSGT00390000000693	ENSGT00940000166021	ENSGT00390000003758	ENSGT00940000163575	ENSGT00940000159552
Argentine black and white tegu	MODERN SPECIES	44	DIAPH3 (ENSSMRG00000000481)	ENSSMRG00000000462	ENSSMRG00000000450	ENSSMRG00000000424	ENSSMRG00000000417	PCDH17 (ENSSMRG00000000386)	ENSSMRG00000000303	ENSSMRG00000000205	OLFM4 (ENSSMRG00000000176)	ENSSMRG00000000030	CNMD (ENSSMRG00000022991)	SUGT1 (ENSSMRG00000022990)	ELF1 (ENSSMRG00000022989)	WBP4 (ENSSMRG00000022988)	MTRF1 (ENSSMRG00000022986)	NAA16 (ENSSMRG00000022985) ##22	RGCC (ENSSMRG00000022984)	VWA8 (ENSSMRG00000022816)	ENSSMRG00000022814	DGKH (ENSSMRG00000022813)	AKAP11 (ENSSMRG00000022812)	TNFSF11 (ENSSMRG00000022811)	ENSSMRG00000022810	EPSTI1 (ENSSMRG00000022808)	DNAJC15 (ENSSMRG00000022807)	ENSSMRG00000022806	ENOX1 (ENSSMRG00000022804)	CCDC122 (ENSSMRG00000022803)	LACC1 (ENSSMRG00000022802)	ENSSMRG00000022801	NUFIP1 (ENSSMRG00000022800)
Common wall lizard	MODERN SPECIES	15	ENSPMRG00000011792	NDUFS6 (ENSPMRG00000011794)	ENSPMRG00000011796	ENSPMRG00000011802	IRX2 (ENSPMRG00000011806)	ENSPMRG00000011810	IRX1 (ENSPMRG00000011814)	ADAMTS16 (ENSPMRG00000011831)	ENSPMRG00000011923	ENSPMRG00000011964	ENSPMRG00000011956	MED10 (ENSPMRG00000011969)	UBE2QL1 (ENSPMRG00000011973)	NSUN2 (ENSPMRG00000012047)	SRD5A1 (ENSPMRG00000012693)	NAA16 (ENSPMRG00000012722) ##22	ENSPMRG00000012863	RGCC (ENSPMRG00000012868)	VWA8 (ENSPMRG00000012925)	DGKH (ENSPMRG00000013494)	AKAP11 (ENSPMRG00000014100)	TNFSF11 (ENSPMRG00000014191)	ENSPMRG00000014214	DNAJC15 (ENSPMRG00000005799)	ENOX1 (ENSPMRG00000005813)	ENSPMRG00000005845	ENSPMRG00000006091	SEC22B (ENSPMRG00000006828)	ALOX5 (ENSPMRG00000006848)	MARCHF8 (ENSPMRG00000006944)	RRBP1 (ENSPMRG00000007008)
Toxicofera	ANCESTRAL SPECIES	2	ENSGT00940000160425	ENSGT00940000155079.a.a	ENSGT00940000156743	ENSGT00940000155487	ENSGT00940000157767	ENSGT00940000156894	ENSGT00900000143708	ENSGT00940000155219	ENSGT00940000155454.r	ENSGT00480000042679.b.b	ENSGT00390000013700	ENSGT00940000157039.b	ENSGT00390000013956	ENSGT00990000203769	ENSGT00940000156877	ENSGT00950000183174.B.b ##22	ENSGT00390000011709	ENSGT00390000006601	ENSGT00940000158106	ENSGT00940000153313.B	ENSGT01070000253816.a.a.b	ENSGT00940000154512	ENSGT00390000013820	ENSGT00940000159907	ENSGT00390000006788.a.b	ENSGT00390000005130	ENSGT00390000000693	ENSGT00940000163647	ENSGT00940000166021	ENSGT00390000003758	ENSGT00940000163575
Elapidae	ANCESTRAL SPECIES	13	ENSGT00940000155079.a.b	ENSGT00940000155079.a.a	ENSGT00940000156743	ENSGT00940000155487	ENSGT00940000157767.i.a	ENSGT00940000156894	ENSGT00900000143708	ENSGT00940000155454.r	ENSGT00940000155219	ENSGT00390000013700	ENSGT00940000157039.b	ENSGT00390000013956	ENSGT00550000075117	ENSGT00990000203769	ENSGT00940000156877	ENSGT00950000183174.B.b ##22	ENSGT00390000011709	ENSGT00390000006601	ENSGT00940000158106	ENSGT00940000153313.B	ENSGT01070000253816.a.a.b	ENSGT00940000159907	ENSGT00390000006788.a.b	ENSGT00390000005130	ENSGT00390000000693	ENSGT00940000163647	ENSGT00940000166021	ENSGT00390000003758	ENSGT00940000163575	ENSGT00390000016051	ENSGT00940000159552
Indian cobra	MODERN SPECIES	5	ENSNNAG00000015586	ENSNNAG00000015642	ENSNNAG00000015662	PCDH17 (ENSNNAG00000015671)	ENSNNAG00000015685	ENSNNAG00000015693	ENSNNAG00000015706	OLFM4 (ENSNNAG00000015722)	ENSNNAG00000015760	SUGT1 (ENSNNAG00000015788)	ELF1 (ENSNNAG00000015818)	WBP4 (ENSNNAG00000015833)	SLC25A38 (ENSNNAG00000015851)	ENSNNAG00000015862	MTRF1 (ENSNNAG00000015872)	NAA16 (ENSNNAG00000015941) ##22	RGCC (ENSNNAG00000016393)	DGKH (ENSNNAG00000016413)	ENSNNAG00000016639	DNAJC15 (ENSNNAG00000016663)	ENOX1 (ENSNNAG00000016671)	ENSNNAG00000016694	LACC1 (ENSNNAG00000016702)	ENSNNAG00000016709	GPALPP1 (ENSNNAG00000007615)	GTF2F2 (ENSNNAG00000007652)	KCTD4 (ENSNNAG00000007740)	TPT1 (ENSNNAG00000007771)	SLC25A30 (ENSNNAG00000007807)	ST3GAL5 (ENSNNAG00000007849)	ATOH8 (ENSNNAG00000007882)
Elapidae_a	ANCESTRAL SPECIES	70	ENSGT00940000160425	ENSGT00940000155079.a.b	ENSGT00940000155079.a.a	ENSGT00940000156743	ENSGT00940000155487	ENSGT00940000157767.i.a	ENSGT00940000156894	ENSGT00900000143708	ENSGT00940000155454.r	ENSGT00940000155219	ENSGT00390000013700	ENSGT00940000157039.b	ENSGT00390000013956	ENSGT00550000075117	ENSGT00940000156877	ENSGT00950000183174.B.b ##22	ENSGT00390000011709	ENSGT00390000006601	ENSGT00940000158106	ENSGT00940000153313.B	ENSGT01070000253816.a.a.b	ENSGT00940000159907	ENSGT00390000006788.a.b	ENSGT00390000005130	ENSGT00390000000693	ENSGT00940000163647	ENSGT00940000166021	ENSGT00390000003758	ENSGT00940000163575	ENSGT00390000016051	ENSGT00940000159552
Acanthophiinae	ANCESTRAL SPECIES	66	ENSGT00940000155079.a.b	ENSGT00940000154818.b.a	ENSGT00940000155079.a.a	ENSGT00940000156743	ENSGT00940000155487	ENSGT00940000157767.i.a	ENSGT00940000156894	ENSGT00900000143708	ENSGT00940000155454.r	ENSGT00940000155219	ENSGT00390000013700	ENSGT00940000157039.b	ENSGT00390000013956	ENSGT00550000075117	ENSGT00940000156877	ENSGT00950000183174.B.b ##22	ENSGT00390000011709	ENSGT00390000006601	ENSGT00940000158106	ENSGT00940000153313.B	ENSGT01070000253816.a.a.b	ENSGT00940000159907	ENSGT00390000006788.a.b	ENSGT00390000005130	ENSGT00390000000693	ENSGT00940000163647	ENSGT00940000166021	ENSGT00940000163575	ENSGT00390000016051	ENSGT00940000159552	ENSGT00390000006051
Mainland tiger snake	MODERN SPECIES	115						ENSNSUG00000008236	PCDH17 (ENSNSUG00000008237)	ENSNSUG00000008238	OLFM4 (ENSNSUG00000008239)	ENSNSUG00000008247	SUGT1 (ENSNSUG00000008248)	ELF1 (ENSNSUG00000008250)	WBP4 (ENSNSUG00000008251)	SLC25A38 (ENSNSUG00000008253)	MTRF1 (ENSNSUG00000008254)	NAA16 (ENSNSUG00000008255) ##22	RGCC (ENSNSUG00000009279)
Eastern brown snake	MODERN SPECIES	27	ENSPTXG00000004015	PCDH20 (ENSPTXG00000004017)	TDRD3 (ENSPTXG00000004018)	DIAPH3 (ENSPTXG00000004024)	PCDH17 (ENSPTXG00000005859)	ENSPTXG00000005860	ENSPTXG00000005862	OLFM4 (ENSPTXG00000005863)	ENSPTXG00000005864	ENSPTXG00000005865	SUGT1 (ENSPTXG00000005866)	ELF1 (ENSPTXG00000005867)	WBP4 (ENSPTXG00000005868)	SLC25A38 (ENSPTXG00000005869)	MTRF1 (ENSPTXG00000005870)	NAA16 (ENSPTXG00000005871) ##22	VWA8 (ENSPTXG00000005872)	DGKH (ENSPTXG00000005947)	AKAP11 (ENSPTXG00000005952)	TNFSF11 (ENSPTXG00000005954)	DNAJC15 (ENSPTXG00000005956)	ENOX1 (ENSPTXG00000005958)	CCDC122 (ENSPTXG00000005959)	LACC1 (ENSPTXG00000005964)	ENSPTXG00000003593	ENSPTXG00000003595	GPALPP1 (ENSPTXG00000003598)	GTF2F2 (ENSPTXG00000003602)	KCTD4 (ENSPTXG00000003604)	TPT1 (ENSPTXG00000003608)	ENSPTXG00000003612
Blue-lipped sea krait	MODERN SPECIES	7436															ENSLLTG00000017999	NAA16 (ENSLLTG00000017994) ##22
Lizard	MODERN SPECIES	2	ENSACAG00000036857	ENSACAG00000037367	ENSACAG00000043009	ENSACAG00000040354	ENSACAG00000044405	ENSACAG00000023618	OLFM4 (ENSACAG00000000380)	ENSACAG00000044102	ENSACAG00000041678	ENSACAG00000000442	SUGT1 (ENSACAG00000000605)	ELF1 (ENSACAG00000000719)	WBP4 (ENSACAG00000000798)	ENSACAG00000042946	MTRF1 (ENSACAG00000000897)	NAA16 (ENSACAG00000000984) ##22	RGCC (ENSACAG00000001170)	VWA8 (ENSACAG00000001188)	DGKH (ENSACAG00000001662)	AKAP11 (ENSACAG00000001911)	TNFSF11 (ENSACAG00000037842)	ENSACAG00000034864	EPSTI1 (ENSACAG00000001987)	DNAJC15 (ENSACAG00000043736)	ENOX1 (ENSACAG00000002030)	ENSACAG00000037987	RGS10 (ENSACAG00000034821)	TIAL1 (ENSACAG00000016986)	BAG3 (ENSACAG00000017032)	INPP5F (ENSACAG00000017047)	MCMBP (ENSACAG00000017098)
tuatara	MODERN SPECIES	1041							OLFM4 (ENSSPUG00000007230)	PCDH8 (ENSSPUG00000007247)	CNMD (ENSSPUG00000007258)	ENSSPUG00000007274	ENSSPUG00000007285	ELF1 (ENSSPUG00000007306)	WBP4 (ENSSPUG00000007329)	ENSSPUG00000007342	MTRF1 (ENSSPUG00000007354)	NAA16 (ENSSPUG00000007362) ##22	RGCC (ENSSPUG00000007376)	ENSSPUG00000007386	ENSSPUG00000007396	ENSSPUG00000007410	ENSSPUG00000007473	ENSSPUG00000007484	AKAP11 (ENSSPUG00000007562)	TNFSF11 (ENSSPUG00000007843)	EPSTI1 (ENSSPUG00000007856)	DNAJC15 (ENSSPUG00000007867)
Anura	ANCESTRAL SPECIES	3	ENSGT00390000001134.a.a	ENSGT00390000000464	ENSGT00940000156743	ENSGT01040000240375.D	ENSGT00940000155487	ENSGT00940000157767	ENSGT00940000156894	ENSGT00940000155219	ENSGT00480000042679.b.b	ENSGT00390000013700	ENSGT00940000157039.b	ENSGT00390000013956	ENSGT00990000203769	ENSGT00940000164962	ENSGT00940000156877	ENSGT00950000183174.B.b ##22	ENSGT00390000011709	ENSGT00390000006601	ENSGT00940000158106	ENSGT00940000153313.B	ENSGT01070000253816.a.a.b	ENSGT00390000013820	ENSGT00940000159907	ENSGT00390000006788.a.b	ENSGT00390000005130	ENSGT00390000000693	ENSGT00940000162467.b	ENSGT00940000166021	ENSGT00390000003758	ENSGT00940000163575	ENSGT00390000016051
Frog	MODERN SPECIES	2	ENSXETG00000042070	diaph3 (ENSXETG00000018144)	ENSXETG00000037497	pcdh17 (ENSXETG00000013565)	ENSXETG00000043598	ENSXETG00000041956	ENSXETG00000043369	ENSXETG00000008792	pcdh8 (ENSXETG00000018865)	cnmd (ENSXETG00000018878)	sugt1 (ENSXETG00000018887)	elf1 (ENSXETG00000018893)	wbp4 (ENSXETG00000018896)	ENSXETG00000040356	kbtbd7 (ENSXETG00000046134)	naa16 (ENSXETG00000018897) ##22	rgcc (ENSXETG00000018908)	vwa8 (ENSXETG00000018910)	dgkh (ENSXETG00000014560)	akap11 (ENSXETG00000014581)	ENSXETG00000042379	tnfsf11 (ENSXETG00000025365)	epsti1 (ENSXETG00000035529)	dnajc15 (ENSXETG00000014585)	enox1 (ENSXETG00000014586)	ENSXETG00000042617	nelfb (ENSXETG00000014774)	lacc1 (ENSXETG00000014775)	serp2 (ENSXETG00000038969)	tsc22d1 (ENSXETG00000033932)	nufip1 (ENSXETG00000014778)
Leishan spiny toad	MODERN SPECIES	5	ENSLLEG00000014301	OLFM4 (ENSLLEG00000014331)	ENSLLEG00000014467	ENSLLEG00000014493	PCDH8 (ENSLLEG00000014518)	ENSLLEG00000014562	CNMD (ENSLLEG00000014604)	SUGT1 (ENSLLEG00000014723)	ENSLLEG00000015055	ELF1 (ENSLLEG00000015090)	WBP4 (ENSLLEG00000015277)	ENSLLEG00000015378	ENSLLEG00000015391	ENSLLEG00000015419	MTRF1 (ENSLLEG00000015442)	NAA16 (ENSLLEG00000015535) ##22	RGCC (ENSLLEG00000015785)	VWA8 (ENSLLEG00000015910)	DGKH (ENSLLEG00000017489)	ENSLLEG00000018968	AKAP11 (ENSLLEG00000019042)	ENSLLEG00000019224	ENSLLEG00000019241	TNFSF11 (ENSLLEG00000019255)	EPSTI1 (ENSLLEG00000019302)	ENSLLEG00000019591	DNAJC15 (ENSLLEG00000019656)	ENSLLEG00000019872	ENSLLEG00000019905	ENOX1 (ENSLLEG00000019955)	ENSLLEG00000020672
Coelacanth	MODERN SPECIES	1146									PCDH8 (ENSLACG00000003656)	CNMD (ENSLACG00000004090)	SUGT1 (ENSLACG00000004667)	ELF1 (ENSLACG00000006056)	WBP4 (ENSLACG00000008754)	ENSLACG00000010399	MTRF1 (ENSLACG00000010582)	NAA16 (ENSLACG00000010903) ##22	zgc:101559 (ENSLACG00000011557)	RGCC (ENSLACG00000012043)
Cyclostomata	ANCESTRAL SPECIES																	ENSGT00950000183174.B #22
Hagfish	MODERN SPECIES	723															ENSEBUG00000016797	naa15b (ENSEBUG00000015049) #22
Lamprey	MODERN SPECIES	2182																naa15a (ENSPMAG00000005506) #22	ENSPMAG00000005442	ENSPMAG00000005432	GRK7 (ENSPMAG00000005416)	ENSPMAG00000005385	ENSPMAG00000010321	ENSPMAG00000010320	ENSPMAG00000010319	ENSPMAG00000005381	ENSPMAG00000005379
Ciona	ANCESTRAL SPECIES	110														ENSGT00940000173349	ENSGT00550000074930	ENSGT00950000183174.B #22	ENSGT00390000015355	ENSGT00940000168285	ENSGT01050000244968.a
Ciona savignyi	MODERN SPECIES	147					ENSCSAVG00000000780	ENSCSAVG00000000779	ENSCSAVG00000000778	ENSCSAVG00000000776	ENSCSAVG00000000774	ENSCSAVG00000000769	ENSCSAVG00000000767	ENSCSAVG00000000765	ENSCSAVG00000000764	ENSCSAVG00000000762	ENSCSAVG00000000743	ENSCSAVG00000000732 #22	ENSCSAVG00000000684	ENSCSAVG00000000683	ENSCSAVG00000000679	ENSCSAVG00000000676	ENSCSAVG00000000674
Ciona intestinalis	MODERN SPECIES	5	ENSCING00000018324	ENSCING00000002259	ENSCING00000002263	ENSCING00000002265	ENSCING00000015742	ENSCING00000022713	ENSCING00000015738	ENSCING00000018724	ENSCING00000005403	ENSCING00000005402	ENSCING00000014495	ENSCING00000021479	ENSCING00000014496	ENSCING00000005400	ENSCING00000005347	ENSCING00000005291 #22	ENSCING00000005877	ENSCING00000014508	ENSCING00000002440	ENSCING00000022974	ENSCING00000005868	ENSCING00000005865	tgfbr-ib (ENSCING00000005855)	ENSCING00000023504	ENSCING00000024082	zf(btb/c2h2) (ENSCING00000000529)	ENSCING00000000334	zf(c3h)-12 (ENSCING00000005843)	ENSCING00000017193	pias-like (ENSCING00000005821)	ENSCING00000014511
Ecdysozoa	ANCESTRAL SPECIES																	ENSGT00950000183174.B #22
Caenorhabditis elegans	MODERN SPECIES	2	F40G9.12 (WBGene00018247)	F40G9.19 (WBGene00189955)	clec-148 (WBGene00018246)	F40G9.14 (WBGene00018248)	F40G9.6 (WBGene00018242)	F40G9.5 (WBGene00018241)	F40G9.15 (WBGene00077531)	mxl-2 (WBGene00003510)	ubc-20 (WBGene00006715)	cox-17 (WBGene00018240)	sec-20 (WBGene00018239)	F40G9.17 (WBGene00185078)	W10C4.1 (WBGene00021124)	klp-20 (WBGene00002230)	hpo-38 (WBGene00021755)	hpo-29 (WBGene00021754) #22	Y50D7A.3 (WBGene00021753)	xpd-1 (WBGene00021752)	taco-1 (WBGene00021757)	Y50D7A.13 (WBGene00194737)	Y50D7A.1 (WBGene00021751)	ads-1 (WBGene00000081)	Y50D7A.10 (WBGene00021758)	Y50D7A.8 (WBGene00021756)	gei-4 (WBGene00001561)	pll-1 (WBGene00004045)	gsto-3 (WBGene00019636)	K10F12.7 (WBGene00019639)	Y55B1BL.1 (WBGene00021909)	Y55B1BL.2 (WBGene00303093)	stim-1 (WBGene00021910)
Fruitfly	MODERN SPECIES	26	Hs3st-B (FBgn0031005)	rictor (FBgn0031006)	Vav (FBgn0040068)	CG8010 (FBgn0031008)	CG32537 (FBgn0052537)	CG32536 (FBgn0052536)	CG8028 (FBgn0031010)	CG8034 (FBgn0031011)	CG8051 (FBgn0031012)	out (FBgn0259834)	nAChRalpha7 (FBgn0086778)	kek5 (FBgn0031016)	CG32533 (FBgn0052533)	narya (FBgn0031018)	mRpS14 (FBgn0044030)	Naa15-16 (FBgn0031020) #22	pcm (FBgn0020261)	ND-18 (FBgn0031021)	CG12204 (FBgn0031022)	ksh (FBgn0040890)	Pfrx (FBgn0027621)	CG14200 (FBgn0031023)	Idh3a (FBgn0027291)	CoRest (FBgn0261573)	CG12231 (FBgn0031026)	CG32532 (FBgn0052532)	Grip84 (FBgn0026430)	car (FBgn0000257)	Tao (FBgn0031030)	CG14218 (FBgn0031031)	CG14204 (FBgn0031032)
Yeast	MODERN SPECIES	3	YDL025W-A	RTK1 (YDL025C)	YDL026W	MRX9 (YDL027C)	MPS1 (YDL028C)	ARP2 (YDL029W)	PRP9 (YDL030W)	DBP10 (YDL031W)	YDL032W	SLM3 (YDL033C)	YDL034W	GPR1 (YDL035C)	PUS9 (YDL036C)	BSC1 (YDL037C)	PRM7 (YDL039C)	NAT1 (YDL040C) #22	YDL041W	SIR2 (YDL042C)	PRP11 (YDL043C)	MTF2 (YDL044C)	FAD1 (YDL045C)	MRP10 (YDL045W-A)	NPC2 (YDL046W)	SIT4 (YDL047W)	STP4 (YDL048C)	KNH1 (YDL049C)	YDL050C	LHP1 (YDL051W)	SLC1 (YDL052C)	PBP4 (YDL053C)	MCH1 (YDL054C)
Fungi/Metazoa group	ANCESTRAL SPECIES																	ENSGT00950000183174.A ##22
Bilateria	ANCESTRAL SPECIES																	ENSGT00950000183174.A ##22
Chordata	ANCESTRAL SPECIES																	ENSGT00950000183174.A ##22
Vertebrata	ANCESTRAL SPECIES																	ENSGT00950000183174.A ##22
Gnathostomata	ANCESTRAL SPECIES	333														ENSGT00910000144226	ENSGT00530000063869.B	ENSGT00950000183174.A ##22	ENSGT00390000018566	ENSGT00940000154089.b	ENSGT00940000156240	ENSGT01050000244888.b.b.a.b	ENSGT00940000154540.b	ENSGT00940000153998.b	ENSGT00940000153883.a
Elephant shark	MODERN SPECIES	1576	ENSCMIG00000016867	ENSCMIG00000016866	pxmp2 (ENSCMIG00000016865)	pole (ENSCMIG00000016766)	P2RX2 (ENSCMIG00000016723)	ENSCMIG00000016721	ENSCMIG00000016696	ENSCMIG00000016690	ENSCMIG00000016682	INPP5J (ENSCMIG00000016665)	selenom (ENSCMIG00000016656)	ENSCMIG00000016653	ENSCMIG00000016649	HECTD4 (ENSCMIG00000016625)	ENSCMIG00000016610	NAA25 (ENSCMIG00000016493) ##22	ERP29 (ENSCMIG00000016416)	mapkapk5 (ENSCMIG00000016329)	ALDH2 (ENSCMIG00000016302)	aplnra (ENSCMIG00000016300)	ENSCMIG00000016289	morc2 (ENSCMIG00000016278)	ENSCMIG00000016272	rpl6 (ENSCMIG00000016266)	ACAD10 (ENSCMIG00000016232)	si:ch211-225b11.1 (ENSCMIG00000016187)	ENSCMIG00000016168	RPH3A (ENSCMIG00000016165)	ptpn11a (ENSCMIG00000015984)	ENSCMIG00000015873	ENSCMIG00000015869
Euteleostomi	ANCESTRAL SPECIES	23											ENSGT00940000157468.a.b	ENSGT00940000153876.B	ENSGT00390000003682	ENSGT00910000144226	ENSGT00530000063869.B	ENSGT00950000183174.A ##22	ENSGT00390000018566	ENSGT00940000154089.b	ENSGT00940000156240	ENSGT00940000161620	ENSGT00500000044909	ENSGT00940000156812	ENSGT00950000183191.b	ENSGT00940000162791	ENSGT00940000166026	ENSGT00940000160241	ENSGT00940000155578	ENSGT00940000153116.B	ENSGT00950000183252	ENSGT00940000153472.a.a	ENSGT00940000159403
Actinopterygii	ANCESTRAL SPECIES	121	ENSGT01050000244888.b.b.a.b	ENSGT00940000154540.b	ENSGT00940000153998.b	ENSGT00940000153883.a	ENSGT00940000161655	ENSGT00940000154284.b	ENSGT00940000177369	ENSGT00940000156855	ENSGT00940000165179	ENSGT00940000157468.a.b	ENSGT00940000153876.B	ENSGT00940000177505	ENSGT00390000003682	ENSGT00910000144226	ENSGT00530000063869.B	ENSGT00950000183174.A ##22	ENSGT00940000154089.b	ENSGT00940000156240	ENSGT00940000161620	ENSGT00500000044909	ENSGT00940000156812	ENSGT00950000183191.b	ENSGT00940000166026
Neopterygii	ANCESTRAL SPECIES	344																ENSGT00950000183174.A ##22	ENSGT00390000003209	ENSGT00940000161620	ENSGT00940000156240	ENSGT00940000154089.b	ENSGT00500000044909	ENSGT00940000156812	ENSGT00950000183191.b	ENSGT00940000166026
Osteoglossocephalai	ANCESTRAL SPECIES	5	ENSGT00940000162236	ENSGT00390000008994	ENSGT00940000155165	ENSGT00940000158691	ENSGT00390000002172.B	ENSGT00390000013370	ENSGT00390000004147	ENSGT00940000154540.b	ENSGT00390000013143	ENSGT00960000189785	ENSGT00550000074853	ENSGT00550000074969	ENSGT00940000155143	ENSGT00940000153876.B	ENSGT00940000157468.a.a.b	ENSGT00950000183174.A ##22	ENSGT00500000044909	ENSGT00940000156812	ENSGT00950000183191.b	ENSGT00940000166026	ENSGT00940000154842.a.a	ENSGT00940000169174	ENSGT00950000182888.b	ENSGT00940000166999.A	ENSGT00910000144273	ENSGT00940000159527	ENSGT01030000234626.D	ENSGT00390000003682	ENSGT00940000173670	ENSGT00940000156918	ENSGT00940000153866.B
Clupeocephala	ANCESTRAL SPECIES	22	ENSGT00390000011475	ENSGT00940000155122.a	ENSGT00940000162236	ENSGT00390000008994	ENSGT00940000155165	ENSGT00940000158691	ENSGT00390000002172.B	ENSGT00390000013370	ENSGT00390000004147	ENSGT00940000154540.b	ENSGT00390000013143	ENSGT00960000189785	ENSGT00550000074853	ENSGT00550000074969	ENSGT00940000155101.e	ENSGT00950000183174.A ##22	ENSGT00500000044909
Otomorpha	ANCESTRAL SPECIES																	ENSGT00950000183174.A ##22
Otophysi	ANCESTRAL SPECIES	20	ENSGT00940000154486.b.a.a.b.e.a.a.b	ENSGT01050000244838.H.c.b	ENSGT00950000182976.b.b	ENSGT00940000155674.tc	ENSGT00940000157368.n	ENSGT00940000158739.d	ENSGT00390000001777	ENSGT00940000155101.e	ENSGT00940000156428	ENSGT00940000165179.a	ENSGT00940000157468.b	ENSGT00940000163301.c.a.a.b	ENSGT00940000153876.B	ENSGT00940000155143.b	ENSGT00550000074969	ENSGT00950000183174.A ##22	ENSGT00500000044909	ENSGT00950000182888.b	ENSGT00950000182869.e.b.g.b	ENSGT00550000074856.d	ENSGT01030000235069	ENSGT00550000074798.a.a	ENSGT00940000159978	ENSGT00940000153654.bf.a.b	ENSGT00950000182772.B.a.a	ENSGT00940000180245	ENSGT00940000155679.d	ENSGT00390000012355.A.a.a.b	ENSGT00940000154290.b	ENSGT00940000155771.c	ENSGT00730000110989.c.a
Characiphysae	ANCESTRAL SPECIES	36	ENSGT01050000244838.H.c.b	ENSGT00950000182976.b.b	ENSGT00940000155674.tc	ENSGT00940000157368.n	ENSGT00940000158739.d	ENSGT00390000001777	ENSGT00940000155101.d	ENSGT00940000155101.e	ENSGT00940000156428	ENSGT00940000165179.a	ENSGT00940000157468.b.t	ENSGT00940000163301.c.a.a.b	ENSGT00940000153876.B	ENSGT00940000155143.a.a	ENSGT00550000074969	ENSGT00950000183174.A ##22	ENSGT00500000044909	ENSGT00950000182888.b	ENSGT00950000182869.e.b.g.b	ENSGT00550000074856.d	ENSGT01030000235069	ENSGT00550000074798.a.a	ENSGT00940000159978	ENSGT00940000153654.cf	ENSGT00950000182772.B.a.a	ENSGT00940000155679.d	ENSGT00390000012355.A.a.a.b	ENSGT00940000154290.b	ENSGT00940000155771.c	ENSGT00730000110989.c.a	ENSGT00950000183162.a.b.i.a
Channel catfish	MODERN SPECIES	7	ELOVL7 (ENSIPUG00000015565)	DEPDC1B (ENSIPUG00000015531)	PDE4D (ENSIPUG00000015377)	RAB3C (ENSIPUG00000015331)	ENSIPUG00000015299	PLK2 (ENSIPUG00000015264)	MN1 (ENSIPUG00000015254)	pitpnb (ENSIPUG00000015202)	ttc28 (ENSIPUG00000014986)	pla2g3 (ENSIPUG00000014935)	ENSIPUG00000014920	ENSIPUG00000014910	PTPN11 (ENSIPUG00000014737)	tmed2 (ENSIPUG00000014652)	ddx55 (ENSIPUG00000014551)	naa25 (ENSIPUG00000014297) ##22	brap (ENSIPUG00000014262)	tor4a (ENSIPUG00000014256)	zgc:56235 (ENSIPUG00000014199)	ENSIPUG00000014186	slc25a1b (ENSIPUG00000014112)	pi4kaa (ENSIPUG00000013998)	hic2 (ENSIPUG00000013986)	ube2l3a (ENSIPUG00000013977)	RASGRF2 (ENSIPUG00000013925)	ENSIPUG00000013922	ENSIPUG00000013914	ANKRD34B (ENSIPUG00000013910)	ENSIPUG00000013894	ENSIPUG00000013860	oclna (ENSIPUG00000013830)
Characiphysae_b	ANCESTRAL SPECIES	9	ENSGT00940000155570.t	ENSGT00940000155496.b	ENSGT00940000154486.b.a.a.b.e.a.a.b	ENSGT01050000244838.H.c.b	ENSGT00950000182976.b.b	ENSGT00940000155674.tc	ENSGT00940000157368.n	ENSGT00940000158739.d	ENSGT00940000155101.e	ENSGT00940000165179.a	ENSGT00940000157468.b.t	ENSGT00940000163301.c.a.a.b	ENSGT00940000153876.B	ENSGT00940000155143.a.a	ENSGT00550000074969	ENSGT00950000183174.A ##22	ENSGT00500000044909	ENSGT00950000182888.b	ENSGT00950000182869.e.b.g.b	ENSGT00550000074856.d	ENSGT01030000235069	ENSGT00550000074798.a.a	ENSGT00940000159978	ENSGT00940000153654.cf	ENSGT00950000182772.B.a.a	ENSGT00940000155679.d	ENSGT00390000012355.A.a.a.b	ENSGT00940000154290.b	ENSGT00940000155771.c	ENSGT00730000110989.c.a	ENSGT00950000183162.a.b.i.a
Characoidei	ANCESTRAL SPECIES	35	ENSGT00940000154486.b.a.a.b.e.a.a.b	ENSGT01050000244838.H.c.b	ENSGT00950000182976.b.b	ENSGT00940000155674.tc	ENSGT00940000157368.n	ENSGT00940000158739.d	ENSGT00390000001777	ENSGT00940000155101.e	ENSGT00940000156428	ENSGT00940000165179.a	ENSGT00940000157468.b.t	ENSGT00940000163301.c.a.a.b	ENSGT00940000153876.B	ENSGT00940000155143.a.a	ENSGT00550000074969	ENSGT00950000183174.A ##22	ENSGT00500000044909	ENSGT00950000182888.b	ENSGT00950000182869.e.b.g.b	ENSGT00550000074856.d	ENSGT01030000235069	ENSGT00550000074798.a.a	ENSGT00940000159978	ENSGT00940000153654.cf	ENSGT00950000182772.B.a.a	ENSGT00940000155679.d	ENSGT00390000012355.A.a.a.b	ENSGT00940000154290.b	ENSGT00940000155771.c	ENSGT00730000110989.c.a	ENSGT00950000183162.a.b.i.a
Red-bellied piranha	MODERN SPECIES	29	DEPDC1B (ENSPNAG00000003199)	PDE4D (ENSPNAG00000014584)	RAB3C (ENSPNAG00000014471)	ENSPNAG00000014443	PLK2 (ENSPNAG00000014428)	MN1 (ENSPNAG00000014387)	pitpnb (ENSPNAG00000014374)	ENSPNAG00000003084	pla2g3 (ENSPNAG00000003066)	ENSPNAG00000014224	ENSPNAG00000014206	ENSPNAG00000014091	ptpn11a (ENSPNAG00000002463)	tmed2 (ENSPNAG00000007181)	ddx55 (ENSPNAG00000012855)	NAA25 (ENSPNAG00000012760) ##22	brap (ENSPNAG00000002344)	tor4aa (ENSPNAG00000012601)	zgc:56235 (ENSPNAG00000012589)	slc25a1b (ENSPNAG00000012559)	ENSPNAG00000012510	pi4kaa (ENSPNAG00000002268)	hic2 (ENSPNAG00000002230)	ube2l3a (ENSPNAG00000002222)	ckmt2a (ENSPNAG00000012346)	RASGRF2 (ENSPNAG00000002184)	ANKRD34B (ENSPNAG00000006897)	ENSPNAG00000002089	MARVELD2 (ENSPNAG00000002079)	oclna (ENSPNAG00000012014)	ERAP1 (ENSPNAG00000011991)
Mexicana tetra	MODERN SPECIES	12	RAB3C (ENSAMXG00000019726)	ENSAMXG00000033889	PLK2 (ENSAMXG00000034894)	MN1 (ENSAMXG00000019754)	pitpnb (ENSAMXG00000041418)	ENSAMXG00000043902	ENSAMXG00000019813	ENSAMXG00000024915	ENSAMXG00000036121	ENSAMXG00000019856	ENSAMXG00000032227	ENSAMXG00000034559	ptpn11a (ENSAMXG00000032054)	tmed2 (ENSAMXG00000031539)	ddx55 (ENSAMXG00000019947)	NAA25 (ENSAMXG00000019973) ##22	brap (ENSAMXG00000041761)	tor4aa (ENSAMXG00000024916)	zgc:56235 (ENSAMXG00000020061)	slc25a1b (ENSAMXG00000042164)	pi4kaa (ENSAMXG00000036754)	hic2 (ENSAMXG00000024918)	ube2l3a (ENSAMXG00000043475)	ckmt2a (ENSAMXG00000042032)	RASGRF2 (ENSAMXG00000020123)	ANKRD34B (ENSAMXG00000024920)	ENSAMXG00000035116	MARVELD2 (ENSAMXG00000020131)	oclna (ENSAMXG00000043628)	ERAP1 (ENSAMXG00000004920)	purbb (ENSAMXG00000020161)
Electric eel	MODERN SPECIES	1021											ENSEEEG00000010616	ENSEEEG00000010617	ptpn11a (ENSEEEG00000010619)	tmed2 (ENSEEEG00000010624)	ddx55 (ENSEEEG00000010631)	NAA25 (ENSEEEG00000010778) ##22	brap (ENSEEEG00000010807)	tor4aa (ENSEEEG00000010816)	zgc:56235 (ENSEEEG00000010823)	slc25a1b (ENSEEEG00000011010)	ENSEEEG00000011125	ENSEEEG00000011126
Cyprinoidei	ANCESTRAL SPECIES	85	ENSGT00940000155496.b	ENSGT00940000154486.b.a.a.b.e.a.a.b	ENSGT01050000244838.H.c.b	ENSGT00950000182976.b.b	ENSGT00940000155674.tc	ENSGT00940000157368.n	ENSGT00940000158739.d	ENSGT00390000001777	ENSGT00940000155101.e	ENSGT00940000156428	ENSGT00940000165179.a	ENSGT00940000157468.b	ENSGT00940000153876.B	ENSGT00940000155143.b	ENSGT00550000074969	ENSGT00950000183174.A ##22	ENSGT00500000044909	ENSGT00950000182888.b	ENSGT00950000182869.e.b.g.b	ENSGT00550000074856.d	ENSGT00550000074798.a.a	ENSGT00940000159978	ENSGT00940000153654.bf.a.b	ENSGT00950000182772.B.a.a	ENSGT00940000180245	ENSGT00940000155679.d	ENSGT00390000012355.A.a.a.b	ENSGT00940000154290.b	ENSGT00940000155771.c	ENSGT00730000110989.c.a	ENSGT00530000063672.b
Cyprininae	DUPLICATION
Cyprininae	ANCESTRAL SPECIES	174	ENSGT00940000157368.n.b	ENSGT00940000158739.d.b	ENSGT00390000001777.e.b	ENSGT00940000155101.e.c	ENSGT00940000156428.dd	ENSGT00940000165179.a.a	ENSGT00940000157468.b.q	ENSGT00940000153876.B.g	ENSGT00940000155143.b	ENSGT00550000074969.b	ENSGT00950000183174.A.b ##22	ENSGT00500000044909.b	ENSGT00950000182888.b.k.a	ENSGT00950000182869.e.b.g.b.e	ENSGT00550000074969.a	ENSGT00950000183174.A.a ##22	ENSGT00500000044909.a	ENSGT00950000182888.b.k.b	ENSGT00950000182869.e.b.g.b.f	ENSGT00550000074856.d	ENSGT00550000074798.a.a.e	ENSGT00940000159978.q.b	ENSGT00550000074798.a.a.f	ENSGT00940000159978.q.a	ENSGT00940000153654.bf.a.b	ENSGT00950000182772.B.a.a.u.b	ENSGT00940000155679.d.g	ENSGT00950000182772.B.a.a.u.a	ENSGT00940000180245	ENSGT00940000155679.d.h	ENSGT00390000012355.A.a.a.b
Goldfish	DUPLICATION
Goldfish	MODERN SPECIES	1	PITPNM2 (ENSCARG00000013726)	KIF2A (ENSCARG00000011321)	ZSWIM6 (ENSCARG00000010772)	ELOVL7 (ENSCARG00000010731)	DEPDC1B (ENSCARG00000010667)	ENSCARG00000010658	PDE4D (ENSCARG00000008572)	PLK2 (ENSCARG00000008256)	RAB3C (ENSCARG00000008204)	MN1 (ENSCARG00000008194)	pitpnb (ENSCARG00000008155)	TTC28 (ENSCARG00000008011)	ENSCARG00000007663	ptpn11a (ENSCARG00000007329)	tmed2 (ENSCARG00000007299)	NAA25 (ENSCARG00000007233) ##22	brap (ENSCARG00000006813)	tor4aa (ENSCARG00000006796)	zgc:56235 (ENSCARG00000006765)	slc25a1b (ENSCARG00000006735)	pi4kaa (ENSCARG00000006476)	hic2 (ENSCARG00000006455)	ENSCARG00000006430	ckmt2a (ENSCARG00000006398)	ENSCARG00000006393	ENSCARG00000005515	MARVELD2 (ENSCARG00000005470)	oclna (ENSCARG00000005457)	ERAP1 (ENSCARG00000003511)	ENSCARG00000003437	ENSCARG00000003429
Goldfish	MODERN SPECIES	396														ptpn11a (ENSCARG00000032640)	tmed2 (ENSCARG00000032585)	NAA25 (ENSCARG00000032217) ##22	brap (ENSCARG00000031018)	tor4aa (ENSCARG00000030958)	zgc:56235 (ENSCARG00000028301)	slc25a1b (ENSCARG00000028164)	pi4kaa (ENSCARG00000027801)
Cyprininae_a	ANCESTRAL SPECIES	61	ENSGT01050000244838.H.c.b.b	ENSGT00950000182976.b.b.a	ENSGT00990000209747	ENSGT00940000155674.tc.a	ENSGT00940000157368.n.b	ENSGT00390000014771.b.b.i.b	ENSGT00940000158739.d.b	ENSGT00390000001777.e.b	ENSGT00940000155101.e.c	ENSGT00940000156428.dd	ENSGT00940000165179.a.a	ENSGT00940000157468.b.q	ENSGT00940000153876.B.g	ENSGT00940000155143.b	ENSGT00550000074969.a	ENSGT00950000183174.A.a ##22	ENSGT00500000044909.a	ENSGT00950000182888.b.k.b	ENSGT00950000182869.e.b.g.b.f	ENSGT00550000074856.d	ENSGT00550000074798.a.a.e	ENSGT00940000159978.q.b	ENSGT00940000153654.bf.a.b	ENSGT00950000182772.B.a.a.u.b	ENSGT00940000155679.d.g	ENSGT00390000012355.A.a.a.b.b	ENSGT00940000154290.b.a	ENSGT00940000155771.c.a	ENSGT00730000110989.c.a.a	ENSGT00940000159086.p	ENSGT00530000063672.b.g
Common carp reference	MODERN SPECIES	24	ENSCCRG00000069464	ELOVL7 (ENSCCRG00000045518)	DEPDC1B (ENSCCRG00000045501)	PDE4D (ENSCCRG00000073113)	RAB3C (ENSCCRG00000077386)	ENSCCRG00000045987	PLK2 (ENSCCRG00000071967)	ENSCCRG00000077958	MN1 (ENSCCRG00000061033)	pitpnb (ENSCCRG00000077431)	TTC28 (ENSCCRG00000070663)	pla2g3 (ENSCCRG00000008621)	ENSCCRG00000059018	ptpn11a (ENSCCRG00000008592)	ddx55 (ENSCCRG00000041874)	ENSCCRG00000041649 ##22	brap (ENSCCRG00000079383)	tor4aa (ENSCCRG00000067562)	zgc:56235 (ENSCCRG00000015764)	slc25a1b (ENSCCRG00000052291)	pi4kaa (ENSCCRG00000068596)	hic2 (ENSCCRG00000064601)	ENSCCRG00000013141	ckmt2a (ENSCCRG00000013146)	ENSCCRG00000013155	ENSCCRG00000078808	ENSCCRG00000047314	ENSCCRG00000082673	oclna (ENSCCRG00000005581)	ENSCCRG00000040619	ENSCCRG00000010441
Golden-line barbel	MODERN SPECIES	321	ENSSGRG00000051465	DEPDC1B (ENSSGRG00000051464)	ENSSGRG00000051463	PDE4D (ENSSGRG00000051437)	RAB3C (ENSSGRG00000051435)	ENSSGRG00000051434	PLK2 (ENSSGRG00000051261)	MN1 (ENSSGRG00000051246)	pitpnb (ENSSGRG00000051225)	TTC28 (ENSSGRG00000051202)	pla2g3 (ENSSGRG00000051199)	ENSSGRG00000051182	ptpn11a (ENSSGRG00000051039)	tmed2 (ENSSGRG00000051019)	ddx55 (ENSSGRG00000051006)	NAA25 (ENSSGRG00000050553) ##22	brap (ENSSGRG00000050543)	zgc:56235 (ENSSGRG00000050531)	slc25a1b (ENSSGRG00000050530)	pi4kaa (ENSSGRG00000050249)	hic2 (ENSSGRG00000050237)	ube2l3a (ENSSGRG00000050233)	ckmt2a (ENSSGRG00000050176)	RASGRF2 (ENSSGRG00000050132)	ANKRD34B (ENSSGRG00000050121)	ENSSGRG00000050071	MARVELD2 (ENSSGRG00000050067)	oclna (ENSSGRG00000050060)	ERAP1 (ENSSGRG00000049796)	ENSSGRG00000049788	ykt6 (ENSSGRG00000049752)
Cyprininae	ANCESTRAL SPECIES	174	ENSGT00940000155570.t.b	ENSGT00940000155496.b.b	ENSGT01050000244838.H.c.b.b	ENSGT00950000182976.b.b.a	ENSGT00940000155674.tc.a	ENSGT00940000157368.n.b	ENSGT00940000158739.d.b	ENSGT00390000001777.e.b	ENSGT00940000155101.e.c	ENSGT00940000156428.dd	ENSGT00940000165179.a.a	ENSGT00940000157468.b.q	ENSGT00940000153876.B.g	ENSGT00940000155143.b	ENSGT00550000074969.b	ENSGT00950000183174.A.b ##22	ENSGT00500000044909.b	ENSGT00950000182888.b.k.a	ENSGT00950000182869.e.b.g.b.e	ENSGT00550000074969.a	ENSGT00950000183174.A.a ##22	ENSGT00500000044909.a	ENSGT00950000182888.b.k.b	ENSGT00950000182869.e.b.g.b.f	ENSGT00550000074856.d	ENSGT00550000074798.a.a.e	ENSGT00940000159978.q.b	ENSGT00550000074798.a.a.f	ENSGT00940000159978.q.a	ENSGT00940000153654.bf.a.b	ENSGT00950000182772.B.a.a.u.b
Goldfish	DUPLICATION
Goldfish	MODERN SPECIES	1044														tmed2 (ENSCARG00000067501)	ddx55 (ENSCARG00000067387)	NAA25 (ENSCARG00000067193) ##22	brap (ENSCARG00000066732)	tor4aa (ENSCARG00000066714)	zgc:56235 (ENSCARG00000066696)
Goldfish	MODERN SPECIES	324											pla2g3 (ENSCARG00000030532)	ENSCARG00000029727	ptpn11a (ENSCARG00000029111)	tmed2 (ENSCARG00000029074)	ddx55 (ENSCARG00000027896)	NAA25 (ENSCARG00000027710) ##22	brap (ENSCARG00000026853)	tor4aa (ENSCARG00000026815)
Cyprininae_a	ANCESTRAL SPECIES	294															ENSGT00550000074969.b	ENSGT00950000183174.A.b ##22	ENSGT00500000044909.b	ENSGT00950000182888.b.k.a	ENSGT00950000182869.e.b.g.b.e	ENSGT00550000074798.a.a.f	ENSGT00940000159978.q.a	ENSGT00950000182772.B.a.a.u.a	ENSGT00940000180245	ENSGT00940000155679.d.h	ENSGT00390000012355.A.a.a.b.a	ENSGT00940000154290.b.b	ENSGT00940000155771.c.b	ENSGT00730000110989.c.a.b	ENSGT00940000164699.a.a	ENSGT00530000063672.b.h	ENSGT00550000074946
Common carp reference	MODERN SPECIES	32	ELOVL7 (ENSCCRG00000061357)	DEPDC1B (ENSCCRG00000045569)	PDE4D (ENSCCRG00000046032)	RAB3C (ENSCCRG00000045994)	ENSCCRG00000026459	PLK2 (ENSCCRG00000037784)	MN1 (ENSCCRG00000009732)	pitpnb (ENSCCRG00000042165)	TTC28 (ENSCCRG00000070435)	pla2g3 (ENSCCRG00000058692)	ENSCCRG00000019721	ptpn11a (ENSCCRG00000019379)	tmed2 (ENSCCRG00000008628)	ENSCCRG00000059126	ddx55 (ENSCCRG00000019303)	ENSCCRG00000019201 ##22	brap (ENSCCRG00000018510)	tor4aa (ENSCCRG00000063616)	zgc:56235 (ENSCCRG00000080198)	pi4kaa (ENSCCRG00000079867)	hic2 (ENSCCRG00000055412)	ENSCCRG00000066521	ckmt2a (ENSCCRG00000016808)	ENSCCRG00000025388	ENSCCRG00000055270	ENSCCRG00000005711	ENSCCRG00000005595	oclna (ENSCCRG00000075127)	ENSCCRG00000031471	ENSCCRG00000040641	ENSCCRG00000010433
Golden-line barbel	MODERN SPECIES	1922															ddx55 (ENSSGRG00000007039)	NAA25 (ENSSGRG00000007042) ##22	brap (ENSSGRG00000007048)	tor4aa (ENSSGRG00000007179)	zgc:56235 (ENSSGRG00000007182)
Zebrafish	MODERN SPECIES	1	SLC46A2 (ENSDARG00000075229)	palm2akap2 (ENSDARG00000069608)	ENSDARG00000099005	PLK2 (ENSDARG00000090752)	ENSDARG00000010729	ENSDARG00000075802	PLPPR1 (ENSDARG00000100642)	MN1 (ENSDARG00000076529)	pitpnb (ENSDARG00000036005)	TTC28 (ENSDARG00000114920)	pla2g3 (ENSDARG00000008948)	ENSDARG00000063436	ptpn11a (ENSDARG00000020334)	tmed2 (ENSDARG00000026908)	ddx55 (ENSDARG00000009864)	NAA25 (ENSDARG00000075446) ##22	brap (ENSDARG00000008560)	tor4aa (ENSDARG00000010145)	zgc:56235 (ENSDARG00000116680)	slc25a1b (ENSDARG00000076381)	pi4kaa (ENSDARG00000076724)	hic2 (ENSDARG00000100497)	ube2l3a (ENSDARG00000112087)	ckmt2a (ENSDARG00000069615)	RASGRF2 (ENSDARG00000075054)	ANKRD34B (ENSDARG00000077086)	ENSDARG00000075747	MARVELD2 (ENSDARG00000025076)	oclna (ENSDARG00000005108)	ERAP1 (ENSDARG00000013024)	ENSDARG00000038302
Clupeiformes	ANCESTRAL SPECIES	513										ENSGT00940000157468.b	ENSGT00940000165179.a	ENSGT00940000156428	ENSGT00940000155101.e	ENSGT00940000155101.d	ENSGT00390000001777	ENSGT00950000183174.A ##22	ENSGT00420000029890
Denticle herring	MODERN SPECIES	13	sbno1 (ENSDCDG00000001375)	kmt5aa (ENSDCDG00000002110)	snrnp35 (ENSDCDG00000002117)	HIP1R (ENSDCDG00000002182)	ENSDCDG00000002389	denr (ENSDCDG00000002390)	ENSDCDG00000002393	ENSDCDG00000002397	ENSDCDG00000002399	ddx55 (ENSDCDG00000002419)	ptpn11a (ENSDCDG00000002696)	pla2g3 (ENSDCDG00000003288)	ENSDCDG00000003431	pitpnb (ENSDCDG00000003830)	ENSDCDG00000003871	NAA25 (ENSDCDG00000003874) ##22	m17 (ENSDCDG00000003885)	ENSDCDG00000003886	hk1 (ENSDCDG00000003903)	ARHGDIA (ENSDCDG00000004015)	QPRT (ENSDCDG00000004020)	ENSDCDG00000004031	PLA2G12B (ENSDCDG00000004183)	scrn2 (ENSDCDG00000004197)	sp6 (ENSDCDG00000004199)	cwc25 (ENSDCDG00000004203)	psmb3 (ENSDCDG00000004206)	PIP4K2B (ENSDCDG00000004217)	ENSDCDG00000004348	ENSDCDG00000004351	ENSDCDG00000004358
Atlantic herring	MODERN SPECIES	3	WHRN (ENSCHAG00000008457)	TSSK2 (ENSCHAG00000008417)	ENSCHAG00000008395	stxbp1a (ENSCHAG00000006686)	niban2a (ENSCHAG00000002697)	slc31a2 (ENSCHAG00000024745)	ENSCHAG00000024629	npdc1a (ENSCHAG00000024599)	pou5f3 (ENSCHAG00000024591)	fut7 (ENSCHAG00000024586)	fut7 (ENSCHAG00000024582)	ENSCHAG00000024567	ENSCHAG00000024560	ENSCHAG00000024537	pitpnb (ENSCHAG00000024528)	NAA25 (ENSCHAG00000024455) ##22	ENSCHAG00000024439	ENSCHAG00000024128	ENSCHAG00000024105	ENSCHAG00000024102	PLK2 (ENSCHAG00000024068)	fbp1b (ENSCHAG00000024056)	si:dkey-26g8.5 (ENSCHAG00000024012)	snx30 (ENSCHAG00000023944)	inip (ENSCHAG00000023941)	ENSCHAG00000023936	hsdl2 (ENSCHAG00000023904)	PTBP3 (ENSCHAG00000023592)	ugcg (ENSCHAG00000023552)	cdc37l1 (ENSCHAG00000023549)	ENSCHAG00000023541
Euteleosteomorpha	ANCESTRAL SPECIES	53	ENSGT00390000014349	ENSGT00990000203619.A.b.b.b.b.a.b	ENSGT00940000155122.b	ENSGT00940000178249	ENSGT00390000002172.B	ENSGT00550000074853	ENSGT00550000074969	ENSGT00940000155143	ENSGT00940000153876.B	ENSGT00940000157468.a.a.b	ENSGT00940000163301.c.a.a.b	ENSGT00940000157468.b	ENSGT00940000165179.a	ENSGT00970000197628	ENSGT00940000155101.e	ENSGT00950000183174.A ##22	ENSGT00500000044909	ENSGT00950000182888.b	ENSGT00950000182869.e.b.g.b	ENSGT00550000074856.c.a	ENSGT01030000235069	ENSGT00550000074798.a.a	ENSGT00390000001362.a	ENSGT00950000182772.B.a.a	ENSGT00940000180245	ENSGT00940000155679.d	ENSGT00390000012355.A.a.a.b
Protacanthopterygii	ANCESTRAL SPECIES	77	ENSGT00940000154115.d	ENSGT00950000182850.a.b.b.b.b	ENSGT00390000016333	ENSGT00940000153139.B.a	ENSGT00940000155679.d	ENSGT00950000182772.B.a.a	ENSGT00940000153654.`f.b	ENSGT00940000180245	ENSGT00940000153654.af	ENSGT00940000159978	ENSGT00550000074798.a.a	ENSGT00550000074856.c.a	ENSGT00950000182869.e.b.g.b	ENSGT00950000182888.b	ENSGT00500000044909	ENSGT00950000183174.A ##22	ENSGT00940000155101.e	ENSGT00940000165179.a	ENSGT00940000157468.b	ENSGT00940000163301.c.a.a.b	ENSGT00940000153876.B	ENSGT00940000155143	ENSGT00550000074969	ENSGT00550000074853.d	ENSGT00390000002172.B	ENSGT00940000155122.b	ENSGT00990000203619.A.b.b.b.b.a.b	ENSGT00390000014349	ENSGT00940000157897.a	ENSGT00940000157648
Salmoninae	DUPLICATION
Salmoninae	ANCESTRAL SPECIES	353	ENSGT00390000002216.c.b	ENSGT00400000024390.c	ENSGT00940000154115.d.d	ENSGT00950000182850.a.b.b.b.b.g	ENSGT00390000016333.i	ENSGT00940000153139.B.a.c	ENSGT00940000155679.d.e.a	ENSGT00950000182772.B.a.a.j.b	ENSGT00940000153654.`f.b	ENSGT00940000159978.s.a	ENSGT00550000074798.a.a.q.a	ENSGT00550000074856.c.a.c	ENSGT00950000182869.e.b.g.b.d	ENSGT00950000182888.b.e.a	ENSGT00500000044909.c	ENSGT00950000183174.A.c ##22	ENSGT00940000155101.e.j	ENSGT00940000156428.bd	ENSGT00940000157468.b.o	ENSGT00940000163301.c.a.a.b	ENSGT00940000153876.B.e	ENSGT00940000155143.l.a
Salmoninae_a	ANCESTRAL SPECIES	87	ENSGT00390000002216.c.b	ENSGT00400000024390.c	ENSGT00940000154115.d.d	ENSGT00950000182850.a.b.b.b.b.g	ENSGT00390000016333.i	ENSGT00940000153139.B.a.c	ENSGT00940000155679.d.e.a	ENSGT00950000182772.B.a.a.j.b	ENSGT00940000153654.`f.b	ENSGT00940000159978.s.a	ENSGT00550000074798.a.a.q.a	ENSGT00550000074856.c.a.c	ENSGT00950000182869.e.b.g.b.d	ENSGT00950000182888.b.e.a	ENSGT00500000044909.c	ENSGT00950000183174.A.c ##22	ENSGT00940000155101.e.j	ENSGT00940000157468.b.o	ENSGT00940000163301.c.a.a.b	ENSGT00940000153876.B.e	ENSGT00940000155143.l.a	ENSGT00390000002172.B.a.a	ENSGT00940000155122.b.bc.a	ENSGT00990000203619.A.b.b.b.b.a.b.i	ENSGT00390000014349.b.a	ENSGT00940000167301	ENSGT00940000153594.c.e.b	ENSGT00940000157897.a.g	ENSGT00940000163293.c.b.c	ENSGT00940000155449.u	ENSGT00940000155149.jc.a.a
Salmo	ANCESTRAL SPECIES	54	ENSGT00390000002216.c.b	ENSGT00400000024390.c	ENSGT00940000154115.d.d	ENSGT00950000182850.a.b.b.b.b.g	ENSGT00390000016333.i	ENSGT00940000153139.B.a.c	ENSGT00940000155679.d.e.a	ENSGT00950000182772.B.a.a.j.b	ENSGT00940000153654.`f.b	ENSGT00940000159978.s.a	ENSGT00550000074798.a.a.q.a	ENSGT00550000074856.c.a.c	ENSGT00950000182869.e.b.g.b.d	ENSGT00950000182888.b.e.a	ENSGT00500000044909.c	ENSGT00950000183174.A.c ##22	ENSGT00940000155101.e.j	ENSGT00940000157468.b.o	ENSGT00940000163301.c.a.a.b	ENSGT00940000153876.B.e	ENSGT00940000155143.l.a	ENSGT00390000002172.B.a.a.a	ENSGT00940000155122.b.bc.a	ENSGT00990000203619.A.b.b.b.b.a.b.i	ENSGT00390000014349.b.a	ENSGT00940000167301	ENSGT00940000153594.c.e.b	ENSGT00940000157897.a.g	ENSGT00940000163293.c.b.c	ENSGT00940000155449.u	ENSGT00940000155149.jc.a.a
Atlantic salmon	MODERN SPECIES		ENSSSAG00000003155	spp1 (ENSSSAG00000100947)	pp2bc (ENSSSAG00000001614)	dema (ENSSSAG00000001462)	ENSSSAG00000096570	xpo7 (ENSSSAG00000107149)	ENSSSAG00000000533	ckmt2 (ENSSSAG00000000174)	ENSSSAG00000110550	ENSSSAG00000080397	pi4kaa (ENSSSAG00000080982)	ENSSSAG00000100677	ENSSSAG00000080973	tor4aa (ENSSSAG00000099633)	brap (ENSSSAG00000080969)	ENSSSAG00000080800 ##22	ENSSSAG00000106460	ENSSSAG00000112958	ENSSSAG00000080542	tmed2 (ENSSSAG00000083448)	ptpn11a (ENSSSAG00000086516)	ENSSSAG00000119820	ENSSSAG00000110143	ENSSSAG00000119962	ENSSSAG00000080481	ENSSSAG00000080479	ENSSSAG00000080464	ENSSSAG00000080448	kmt5aa (ENSSSAG00000080440)	sbno1 (ENSSSAG00000079755)	CDK2AP1 (ENSSSAG00000079661)
River trout	MODERN SPECIES	15	ENSSTUG00000036946	spp1 (ENSSTUG00000036943)	ppp3ccb (ENSSTUG00000032896)	dmtn (ENSSTUG00000032765)	pbdc1 (ENSSTUG00000032741)	xpo7 (ENSSTUG00000031531)	RASGRF2 (ENSSTUG00000029003)	ckmt2a (ENSSTUG00000028892)	ENSSTUG00000028864	HIC2 (ENSSTUG00000028859)	pi4kaa (ENSSTUG00000027067)	SLC25A1 (ENSSTUG00000026875)	VDAC3 (ENSSTUG00000026859)	tor4aa (ENSSTUG00000026854)	brap (ENSSTUG00000025931)	NAA25 (ENSSTUG00000025671) ##22	ENSSTUG00000025629	ENSSTUG00000025269	ENSSTUG00000025253	ENSSTUG00000024432	ENSSTUG00000024380	ptpn11a (ENSSTUG00000024087)	tmed2 (ENSSTUG00000024036)	ENSSTUG00000024023	ENSSTUG00000024014	ENSSTUG00000024010	denr (ENSSTUG00000023820)	ENSSTUG00000023793	HIP1R (ENSSTUG00000023701)	RILPL1 (ENSSTUG00000023621)	rnf170 (ENSSTUG00000023612)
Oncorhynchus	ANCESTRAL SPECIES	67	ENSGT00390000002216.c.b	ENSGT00400000024390.c	ENSGT00940000154115.d.d	ENSGT00950000182850.a.b.b.b.b.g	ENSGT00390000016333.i	ENSGT00940000153139.B.a.c	ENSGT00940000155679.d.e.a	ENSGT00950000182772.B.a.a.j.b	ENSGT00940000153654.af	ENSGT00940000159978.s.a	ENSGT00550000074798.a.a.q.a	ENSGT00550000074856.c.a.c	ENSGT00950000182869.e.b.g.b.d	ENSGT00950000182888.b.e.a	ENSGT00500000044909.c	ENSGT00950000183174.A.c ##22	ENSGT00940000155101.e.j	ENSGT00940000156428.bd	ENSGT00940000157468.b.o	ENSGT00940000163301.c.a.a.b	ENSGT00940000153876.B.e	ENSGT00940000155143.l.a	ENSGT00390000002172.B.a.a	ENSGT00940000155122.b.bc.a	ENSGT00990000203619.A.b.b.b.b.a.b.i.a	ENSGT00390000014349.b.b	ENSGT00990000203619.A.b.b.b.b.a.b.i.b	ENSGT00390000014349.b.a	ENSGT00940000167301	ENSGT00940000153594.c.e.b	ENSGT00940000157897.a.g
Oncorhynchus_a	ANCESTRAL SPECIES	74	ENSGT00390000002216.c.b	ENSGT00400000024390.c	ENSGT00940000154115.d.d	ENSGT00950000182850.a.b.b.b.b.g	ENSGT00390000016333.i	ENSGT00940000153139.B.a.c	ENSGT00940000155679.d.e.a	ENSGT00950000182772.B.a.a.j.b	ENSGT00940000153654.af	ENSGT00940000159978.s.a	ENSGT00550000074798.a.a.q.a	ENSGT00550000074856.c.a.c	ENSGT00950000182869.e.b.g.b.d	ENSGT00950000182888.b.e.a	ENSGT00500000044909.c	ENSGT00950000183174.A.c ##22	ENSGT00940000155101.e.j	ENSGT00940000156428.bd	ENSGT00940000157468.b.o	ENSGT00940000163301.c.a.a.b	ENSGT00940000153876.B.e	ENSGT00940000155143.l.a	ENSGT00390000002172.B.a.a	ENSGT00940000155122.b.bc.a	ENSGT00990000203619.A.b.b.b.b.a.b.i.a	ENSGT00390000014349.b.b	ENSGT00990000203619.A.b.b.b.b.a.b.i.b	ENSGT00390000014349.b.a	ENSGT00940000167301	ENSGT00940000153594.c.e.b	ENSGT00940000157897.a.g
Coho salmon	MODERN SPECIES	15	spp1 (ENSOKIG00005014310)	ENSOKIG00005013086	dmtn (ENSOKIG00005013010)	PBDC1 (ENSOKIG00005012996)	xpo7 (ENSOKIG00005008326)	RASGRF2 (ENSOKIG00005007598)	ckmt2a (ENSOKIG00005007515)	UBE2L5 (ENSOKIG00005007504)	HIC2 (ENSOKIG00005007498)	pi4kaa (ENSOKIG00005006349)	SLC25A1 (ENSOKIG00005006155)	ENSOKIG00005006099	ENSOKIG00005022139	tor4aa (ENSOKIG00005022121)	brap (ENSOKIG00005021927)	NAA25 (ENSOKIG00005021702) ##22	ENSOKIG00005021621	ENSOKIG00005021330	ENSOKIG00005021257	ENSOKIG00005021216	PTPN11 (ENSOKIG00005020915)	ENSOKIG00005020828	BCL7A (ENSOKIG00005020816)	ENSOKIG00005020800	ENSOKIG00005020784	DENR (ENSOKIG00005020663)	ENSOKIG00005020652	denr (ENSOKIG00005020631)	ENSOKIG00005020614	HIP1R (ENSOKIG00005020305)	RILPL1 (ENSOKIG00005020204)
Chinook salmon	MODERN SPECIES	12	vldlr (ENSOTSG00005010375)	spp1 (ENSOTSG00005011947)	ppp3ccb (ENSOTSG00005011948)	dmtn (ENSOTSG00005012288)	pbdc1 (ENSOTSG00005012291)	xpo7 (ENSOTSG00005012328)	RASGRF2 (ENSOTSG00005016851)	ckmt2a (ENSOTSG00005021213)	UBE2L5 (ENSOTSG00005021263)	HIC2 (ENSOTSG00005021264)	PI4KA (ENSOTSG00005021281)	SLC25A1 (ENSOTSG00005022343)	ENSOTSG00005022384	tor4aa (ENSOTSG00005022385)	brap (ENSOTSG00005022387)	NAA25 (ENSOTSG00005022476) ##22	PITPNB (ENSOTSG00005022480)	ENSOTSG00005022492	ENSOTSG00005022571	ptpn11a (ENSOTSG00005022589)	tmed2 (ENSOTSG00005022698)	ERMP1 (ENSOTSG00005022706)	ENSOTSG00005022760	ENSOTSG00005022762	oaz1b (ENSOTSG00005022877)	PRAG1 (ENSOTSG00005022878)	TMEM38B (ENSOTSG00005022880)	ZNF462 (ENSOTSG00005022883)	rad23b (ENSOTSG00005022884)	klf4 (ENSOTSG00005022892)	ENSOTSG00005034666
Rainbow trout	MODERN SPECIES	26	spp1 (ENSOMYG00000046677)	ENSOMYG00000046720	dmtn (ENSOMYG00000021598)	ENSOMYG00000046802	xpo7 (ENSOMYG00000046957)	ENSOMYG00000047150	ENSOMYG00000047234	ENSOMYG00000048403	ENSOMYG00000047251	pi4kaa (ENSOMYG00000047266)	ENSOMYG00000047340	ENSOMYG00000071407	ENSOMYG00000047378	tor4aa (ENSOMYG00000047398)	ENSOMYG00000000080	ENSOMYG00000000664 ##22	ENSOMYG00000000862	ENSOMYG00000074688	ENSOMYG00000036015	ENSOMYG00000000987	ENSOMYG00000000995	ENSOMYG00000001106	tmed2 (ENSOMYG00000001181)	ENSOMYG00000001197	ENSOMYG00000001516	ENSOMYG00000001476	ENSOMYG00000001231	ENSOMYG00000058786	ENSOMYG00000001548	ENSOMYG00000002542	ENSOMYG00000003166
Huchen	MODERN SPECIES	1926															brap (ENSHHUG00000010320)	NAA25 (ENSHHUG00000010334) ##22	ENSHHUG00000010374	ENSHHUG00000010557	ENSHHUG00000010559	ptpn11a (ENSHHUG00000010582)	tmed2 (ENSHHUG00000010881)	ENSHHUG00000010964
Salmoninae	ANCESTRAL SPECIES	179					ENSGT00390000016333.j	ENSGT00940000153139.B.a.d	ENSGT00940000155679.d.e.b	ENSGT00950000182772.B.a.a.j.a	ENSGT00940000153654.`f.a.a	ENSGT00940000159978.s.b	ENSGT00550000074798.a.a.q.b	ENSGT00550000074856.c.a.d	ENSGT00950000182869.e.b.g.b.c	ENSGT00950000182888.b.e.b	ENSGT00500000044909.d	ENSGT00950000183174.A.d ##22	ENSGT00940000155101.e.i	ENSGT00970000197628	ENSGT00940000165179.a	ENSGT00940000157468.b.p	ENSGT00940000157468.a.a.b	ENSGT00940000153876.B.f	ENSGT00940000155143.l.b	ENSGT00550000074969	ENSGT00550000074853.d	ENSGT00390000002172.B.a.b	ENSGT00940000155122.b.bc.b	ENSGT00990000203619.A.b.b.b.b.a.b.j	ENSGT00390000014349.a	ENSGT00940000157897.a.h	ENSGT00940000157648
Huchen	MODERN SPECIES	1290					pbdc1 (ENSHHUG00000044068)	xpo7 (ENSHHUG00000043838)	RASGRF2 (ENSHHUG00000043798)	ckmt2a (ENSHHUG00000043788)	ube2l3a (ENSHHUG00000043765)	HIC2 (ENSHHUG00000043760)	PI4KA (ENSHHUG00000043721)	SLC25A1 (ENSHHUG00000043708)	zgc:56235 (ENSHHUG00000043639)	TOR4A (ENSHHUG00000043636)	brap (ENSHHUG00000043626)	NAA25 (ENSHHUG00000043621) ##22	PITPNB (ENSHHUG00000043586)
Salmoninae_a	ANCESTRAL SPECIES	24	ENSGT00390000002216.c.a	ENSGT00400000024390.d	ENSGT00940000154115.d.c	ENSGT00950000182850.a.b.b.b.b.h	ENSGT00390000016333.j	ENSGT00940000153139.B.a.d	ENSGT00940000155679.d.e.b	ENSGT00950000182772.B.a.a.j.a	ENSGT00940000153654.af	ENSGT00940000159978.s.b	ENSGT00550000074798.a.a.q.b	ENSGT00550000074856.c.a.d	ENSGT00950000182869.e.b.g.b.c	ENSGT00950000182888.b.e.b	ENSGT00500000044909.d	ENSGT00950000183174.A.d ##22	ENSGT00940000155101.e.i	ENSGT00940000156428.bd	ENSGT00940000165179.a	ENSGT00940000157468.b.p	ENSGT00940000153876.B.f	ENSGT00940000155143.l.b	ENSGT00550000074969	ENSGT00550000074853.d	ENSGT00390000002172.B.a.b	ENSGT00940000155122.b.bc.b	ENSGT00990000203619.A.b.b.b.b.a.b.j	ENSGT00390000014349.a	ENSGT00940000157897.a.h	ENSGT00940000157648	ENSGT00940000163293.c.b.d
Salmo	ANCESTRAL SPECIES	13	ENSGT00390000002216.c.a	ENSGT00400000024390.d	ENSGT00940000166302.d	ENSGT00950000182850.a.b.b.b.b.h	ENSGT00940000153139.B.a.d	ENSGT00390000016333.j	ENSGT00940000155679.d.e.b	ENSGT00950000182772.B.a.a.j.a	ENSGT00940000153654.af	ENSGT00940000159978.s.b	ENSGT00550000074798.a.a.q.b	ENSGT00550000074856.c.a.d	ENSGT00950000182869.e.b.g.b.c	ENSGT00950000182888.b.e.b	ENSGT00500000044909.d	ENSGT00950000183174.A.d ##22	ENSGT00940000155101.e.i	ENSGT00940000156428.bd	ENSGT00940000165179.a	ENSGT00940000157468.b.p	ENSGT00940000153876.B.f	ENSGT00940000155143.l.b	ENSGT00550000074969	ENSGT00550000074853.d	ENSGT00390000002172.B.a.b	ENSGT00940000155122.b.bc.b	ENSGT00990000203619.A.b.b.b.b.a.b.j	ENSGT00390000014349.a	ENSGT00940000157897.a.h	ENSGT00940000157648	ENSGT00940000163293.c.b.d
River trout	MODERN SPECIES	6	ENSSTUG00000011123	spp1 (ENSSTUG00000011173)	ENSSTUG00000011182	ENSSTUG00000011189	dmtn (ENSSTUG00000011230)	pbdc1 (ENSSTUG00000011252)	xpo7 (ENSSTUG00000011342)	RASGRF2 (ENSSTUG00000013940)	ckmt2a (ENSSTUG00000014287)	UBE2L5 (ENSSTUG00000014402)	HIC2 (ENSSTUG00000014445)	SLC25A1 (ENSSTUG00000014587)	ENSSTUG00000015037	TOR4A (ENSSTUG00000015099)	brap (ENSSTUG00000015117)	NAA25 (ENSSTUG00000015362) ##22	pitpnb (ENSSTUG00000015426)	ENSSTUG00000015458	ENSSTUG00000015480	ENSSTUG00000015699	ptpn11a (ENSSTUG00000015715)	tmed2 (ENSSTUG00000015968)	ddx55 (ENSSTUG00000015993)	EIF2B1 (ENSSTUG00000016163)	ENSSTUG00000016440	ENSSTUG00000016454	ENSSTUG00000016461	denr (ENSSTUG00000016464)	RILPL1 (ENSSTUG00000016483)	snrnp35 (ENSSTUG00000016535)	kmt5aa (ENSSTUG00000016545)
Atlantic salmon	MODERN SPECIES	4	ENSSSAG00000106802	ENSSSAG00000079106	dmtn (ENSSSAG00000094544)	ENSSSAG00000079534	xpo7 (ENSSSAG00000119701)	ENSSSAG00000099207	ENSSSAG00000080140	ENSSSAG00000080382	ub2l3 (ENSSSAG00000080389)	ENSSSAG00000103870	pi4kaa (ENSSSAG00000080418)	ENSSSAG00000119324	ENSSSAG00000080605	tor4aa (ENSSSAG00000080619)	ENSSSAG00000080521	ENSSSAG00000080629 ##22	pitpnb (ENSSSAG00000080688)	ENSSSAG00000080714	ENSSSAG00000109130	ENSSSAG00000080560	ptpn11a (ENSSSAG00000004427)	tmed2 (ENSSSAG00000108962)	ddx55 (ENSSSAG00000005403)	EIF2B1 (ENSSSAG00000005551)	ENSSSAG00000114897	ENSSSAG00000005975	denr (ENSSSAG00000005986)	rilpl1 (ENSSSAG00000041761)	snrnp35 (ENSSSAG00000006055)	kmt5aa (ENSSSAG00000006163)	sbno1 (ENSSSAG00000041895)
Oncorhynchus	ANCESTRAL SPECIES	21	ENSGT00390000002216.c.a	ENSGT00400000024390.d	ENSGT00940000154115.d.c	ENSGT00950000182850.a.b.b.b.b.h	ENSGT00390000016333.j	ENSGT00940000153139.B.a.d	ENSGT00940000155679.d.e.b	ENSGT00950000182772.B.a.a.j.a	ENSGT00940000153654.`f.a.a	ENSGT00940000159978.s.b	ENSGT00550000074798.a.a.q.b.b	ENSGT00550000074856.c.a.d	ENSGT00950000182869.e.b.g.b.c	ENSGT00950000182888.b.e.b	ENSGT00500000044909.d	ENSGT00950000183174.A.d ##22	ENSGT00940000155101.e.i	ENSGT00940000165179.a	ENSGT00940000157468.b.p	ENSGT00940000153876.B.f	ENSGT00940000155143.l.b	ENSGT00550000074969	ENSGT00550000074853.d	ENSGT00390000002172.B.a.b	ENSGT00940000155122.b.bc.b	ENSGT00990000203619.A.b.b.b.b.a.b.j	ENSGT00390000014349.a	ENSGT00940000157897.a.h	ENSGT00940000157648	ENSGT00940000163293.c.b.d	ENSGT00940000155449.v
Oncorhynchus_a	ANCESTRAL SPECIES	19	ENSGT00400000024390.d	ENSGT00940000154115.d.c	ENSGT00950000182850.a.b.b.b.b.h	ENSGT00390000016333.j	ENSGT00940000153139.B.a.d	ENSGT00940000155679.d.f	ENSGT00940000155679.d.e.b	ENSGT00950000182772.B.a.a.j.a	ENSGT00940000153654.`f.a.a	ENSGT00940000159978.s.b	ENSGT00550000074798.a.a.q.b.b	ENSGT00550000074856.c.a.d	ENSGT00950000182869.e.b.g.b.c	ENSGT00950000182888.b.e.b	ENSGT00500000044909.d	ENSGT00950000183174.A.d ##22	ENSGT00940000155101.e.i	ENSGT00940000165179.a	ENSGT00940000157468.b.p	ENSGT00940000153876.B.f	ENSGT00940000155143.l.b	ENSGT00550000074969	ENSGT00550000074853.d	ENSGT00390000002172.B.a.b	ENSGT00940000155122.b.bc.b	ENSGT00990000203619.A.b.b.b.b.a.b.j	ENSGT00390000014349.a	ENSGT00940000157897.a.h	ENSGT00940000157648	ENSGT00940000163293.c.b.d	ENSGT00940000155449.v
Chinook salmon	MODERN SPECIES	33	KCNV2 (ENSOTSG00005046704)	vldlr (ENSOTSG00005043824)	ENSOTSG00005043809	spp1 (ENSOTSG00005043807)	dmtn (ENSOTSG00005043806)	pbdc1 (ENSOTSG00005043805)	xpo7 (ENSOTSG00005042804)	ENSOTSG00005042798	cyhr1 (ENSOTSG00005042797)	ENSOTSG00005042795	PI4KA (ENSOTSG00005042790)	SLC25A1 (ENSOTSG00005042782)	ENSOTSG00005042781	TOR4A (ENSOTSG00005042780)	brap (ENSOTSG00005042778)	NAA25 (ENSOTSG00005042695) ##22	pitpnb (ENSOTSG00005042687)	pla2g3 (ENSOTSG00005042681)	ENSOTSG00005042679	ptpn11a (ENSOTSG00005042626)	tmed2 (ENSOTSG00005042620)	ddx55 (ENSOTSG00005042618)	EIF2B1 (ENSOTSG00005042607)	ENSOTSG00005042606	ENSOTSG00005042602	ENSOTSG00005042600	denr (ENSOTSG00005042597)	RILPL1 (ENSOTSG00005042596)	snrnp35 (ENSOTSG00005042593)	kmt5aa (ENSOTSG00005042592)	sbno1 (ENSOTSG00005036204)
Coho salmon	MODERN SPECIES	26	KCNV2 (ENSOKIG00005013491)	vldlr (ENSOKIG00005004075)	ENSOKIG00005003626	spp1 (ENSOKIG00005003610)	ppp3ccb (ENSOKIG00005003539)	ENSOKIG00005003498	pbdc1 (ENSOKIG00005003485)	RASGRF2 (ENSOKIG00005003338)	ckmt2a (ENSOKIG00005003317)	ube2l3a (ENSOKIG00005003307)	HIC2 (ENSOKIG00005003299)	pi4kaa (ENSOKIG00005002855)	SLC25A1 (ENSOKIG00005002637)	zgc:56235 (ENSOKIG00005002604)	tor4aa (ENSOKIG00005002592)	NAA25 (ENSOKIG00005002458) ##22	pitpnb (ENSOKIG00005002395)	ENSOKIG00005002378	pla2g3 (ENSOKIG00005002265)	ENSOKIG00005002245	ptpn11a (ENSOKIG00005002033)	tmed2 (ENSOKIG00005001942)	ddx55 (ENSOKIG00005001805)	EIF2B1 (ENSOKIG00005001705)	ENSOKIG00005001690	ELOVL5 (ENSOKIG00005001659)	ENSOKIG00005001630	ENSOKIG00005001628	denr (ENSOKIG00005001616)	RILPL1 (ENSOKIG00005001582)	snrnp35 (ENSOKIG00005001566)
Rainbow trout	MODERN SPECIES	3	dmtn (ENSOMYG00000069825)	ENSOMYG00000021586	xpo7 (ENSOMYG00000021515)	ENSOMYG00000019617	ENSOMYG00000019051	ENSOMYG00000019023	ENSOMYG00000019004	ENSOMYG00000054995	pi4kaa (ENSOMYG00000018843)	ENSOMYG00000042313	ENSOMYG00000018770	ENSOMYG00000070169	ENSOMYG00000018757	tor4aa (ENSOMYG00000018751)	ENSOMYG00000018738	ENSOMYG00000018459 ##22	pitpnb (ENSOMYG00000018388)	ENSOMYG00000035441	ENSOMYG00000018115	ENSOMYG00000076972	ENSOMYG00000018094	ENSOMYG00000018084	ENSOMYG00000077170	ptpn11a (ENSOMYG00000018059)	tmed2 (ENSOMYG00000018038)	ddx55 (ENSOMYG00000017955)	EIF2B1 (ENSOMYG00000017734)	ENSOMYG00000017701	ENSOMYG00000017684	ENSOMYG00000001221	ENSOMYG00000017681
Northern pike	MODERN SPECIES	13	ckmt2a (ENSELUG00000002389)	ENSELUG00000029352	UBE2L5 (ENSELUG00000002395)	ENSELUG00000002399	ENSELUG00000028537	ENSELUG00000002402	ENSELUG00000025888	ENSELUG00000030963	ENSELUG00000002405	HIC2 (ENSELUG00000002408)	pi4kaa (ENSELUG00000002430)	SLC25A1 (ENSELUG00000002451)	VDAC3 (ENSELUG00000002460)	tor4aa (ENSELUG00000002462)	brap (ENSELUG00000002478)	NAA25 (ENSELUG00000002508) ##22	pipnb (ENSELUG00000002530)	ENSELUG00000002573	ENSELUG00000002577	ptpn11a (ENSELUG00000002590)	tmed2 (ENSELUG00000000068)	ddx55 (ENSELUG00000002616)	EIF2B1 (ENSELUG00000002604)	ENSELUG00000034357	ENSELUG00000025715	BCL7A (ENSELUG00000002625)	ENSELUG00000002632	ENSELUG00000028935	denr (ENSELUG00000002656)	ENSELUG00000002709	HIP1R (ENSELUG00000002768)
Acanthomorphata	ANCESTRAL SPECIES	15	ENSGT00940000153594.c.e.b	ENSGT00940000167301	ENSGT00390000014349	ENSGT00990000203619.A.b.b.b.b.a.b	ENSGT00940000155122.b	ENSGT00940000178249	ENSGT00390000002172.B	ENSGT00550000074853	ENSGT00550000074969	ENSGT00940000155143	ENSGT00940000153876.B	ENSGT00940000163301.c.a.a.b	ENSGT00940000157468.b	ENSGT00940000165179.a	ENSGT00940000155101.e	ENSGT00950000183174.A ##22	ENSGT00500000044909	ENSGT00950000182888.b	ENSGT00950000182869.e.b.g.b	ENSGT00550000074856.c.a	ENSGT00550000074798.a.a	ENSGT00940000155771.c	ENSGT00730000110989.c.a	ENSGT00390000012355.A.a.a.b	ENSGT00940000155679.d	ENSGT00940000180245	ENSGT00950000182772.B.a.a.g	ENSGT00940000165322	ENSGT00940000154290.b	ENSGT00940000167011	ENSGT00940000156317.w.a
Cod	MODERN SPECIES	10	ENSGMOG00000018198	ENSGMOG00000017913	ENSGMOG00000030757	ENSGMOG00000017892	ENSGMOG00000019828	ENSGMOG00000027051	ENSGMOG00000017818	EIF2B1 (ENSGMOG00000017803)	ddx55 (ENSGMOG00000017762)	tmed2 (ENSGMOG00000022955)	ptpn11a (ENSGMOG00000017724)	ENSGMOG00000017516	ENSGMOG00000017499	pla2g3 (ENSGMOG00000035656)	pitpnb (ENSGMOG00000012346)	ENSGMOG00000012355 ##22	ENSGMOG00000012362	tor4aa (ENSGMOG00000012368)	ENSGMOG00000012370	ENSGMOG00000012373	pi4kaa (ENSGMOG00000012377)	ENSGMOG00000012388	ENSGMOG00000012394	ENSGMOG00000034734	ENSGMOG00000012397	ckmt2a (ENSGMOG00000012408)	ENSGMOG00000012410	ENSGMOG00000023477	ENSGMOG00000008760	ENSGMOG00000023171	ENSGMOG00000034777
Euacanthomorphacea	ANCESTRAL SPECIES	12	ENSGT00940000153594.c.e.b	ENSGT00940000167301	ENSGT00390000014349	ENSGT00990000203619.A.b.b.b.b.a.b	ENSGT00940000155122.b	ENSGT00940000178249	ENSGT00390000002172.B	ENSGT00550000074853	ENSGT00550000074969	ENSGT00940000155143	ENSGT00940000153876.B	ENSGT00940000163301.c.a.a.b	ENSGT00940000157468.b	ENSGT00940000165179.a	ENSGT00940000155101.e	ENSGT00950000183174.A ##22	ENSGT00500000044909	ENSGT00950000182888.b	ENSGT00950000182869.e.b.g.b	ENSGT00550000074856.c.a	ENSGT00550000074798.a.a	ENSGT00940000159978	ENSGT00390000009837	ENSGT00390000012630.B	ENSGT00940000155771.c	ENSGT00730000110989.c.a	ENSGT00390000012355.A.a.a.b	ENSGT00940000155679.d	ENSGT00940000180245	ENSGT00950000182772.B.a.a.g	ENSGT00940000165322
Pinecone sodierfish	MODERN SPECIES	3	denr (ENSMMDG00005010987)	ENSMMDG00005010988	ENSMMDG00005010989	ENSMMDG00005010992	bcl7a (ENSMMDG00005010994)	eif2b1 (ENSMMDG00005011003)	ddx55 (ENSMMDG00005011062)	tmed2 (ENSMMDG00005011071)	ptpn11a (ENSMMDG00005011122)	ENSMMDG00005012809	ENSMMDG00005013193	ENSMMDG00005013195	pla2g3 (ENSMMDG00005013199)	ENSMMDG00005013226	pitpnb (ENSMMDG00005013256)	NAA25 (ENSMMDG00005013264) ##22	brap (ENSMMDG00005013344)	tor4aa (ENSMMDG00005013432)	zgc:56235 (ENSMMDG00005013449)	SLC25A1 (ENSMMDG00005014532)	pi4kaa (ENSMMDG00005015498)	HIC2 (ENSMMDG00005015642)	MARVELD2 (ENSMMDG00005015647)	oclna (ENSMMDG00005015651)	ANKRD34B (ENSMMDG00005015655)	RASGRF2 (ENSMMDG00005015662)	ckmt2a (ENSMMDG00005015673)	ENSMMDG00005015682	ENSMMDG00005015722	ENSMMDG00005016574	CNNM4 (ENSMMDG00005016585)
Percomorphaceae	ANCESTRAL SPECIES	16	ENSGT00940000157897.a	ENSGT00940000153594.c.e.b	ENSGT00940000167301	ENSGT00390000014349	ENSGT00990000203619.A.b.b.b.b.a.b	ENSGT00940000155122.b	ENSGT00940000178249	ENSGT00390000002172.B	ENSGT00550000074853	ENSGT00550000074969	ENSGT00940000155143	ENSGT00940000153876.B	ENSGT00940000157468.b	ENSGT00940000165179.a	ENSGT00940000155101.e	ENSGT00950000183174.A ##22	ENSGT00500000044909	ENSGT00950000182888.b	ENSGT00950000182869.e.b.g.b	ENSGT00550000074856.c.a	ENSGT00550000074798.a.a	ENSGT00940000159978	ENSGT00390000009837	ENSGT00390000012630.B	ENSGT00940000155771.c	ENSGT00730000110989.c.a	ENSGT00390000012355.A.a.a.b	ENSGT00940000155679.d	ENSGT00950000182772.B.a.a.g	ENSGT00940000165322	ENSGT00940000180245
Tiger tail seahorse	MODERN SPECIES	485	tbca (ENSHCOG00000004612)	AP3B1 (ENSHCOG00000004632)	uqcr10 (ENSHCOG00000004645)	ENSHCOG00000004660	eif2b1 (ENSHCOG00000004679)	ddx55 (ENSHCOG00000004710)	ENSHCOG00000004716	tmed2 (ENSHCOG00000004728)	ptpn11a (ENSHCOG00000004751)	ENSHCOG00000004776	ENSHCOG00000004786	ENSHCOG00000004799	ENSHCOG00000004806	pitpnb (ENSHCOG00000004815)	pitpnb (ENSHCOG00000004846)	NAA25 (ENSHCOG00000000876) ##22	brap (ENSHCOG00000004954)	tor4aa (ENSHCOG00000004966)	zgc:56235 (ENSHCOG00000004980)	SLC25A1 (ENSHCOG00000005007)	ENSHCOG00000005017	pi4kaa (ENSHCOG00000005042)	MARVELD2 (ENSHCOG00000005055)	oclna (ENSHCOG00000005062)	ENSHCOG00000005085	ckmt2a (ENSHCOG00000005105)	ENSHCOG00000005125	ENSHCOG00000005134	ENSHCOG00000005141	CNNM4 (ENSHCOG00000005167)	CNNM3 (ENSHCOG00000005178)
Percomorphaceae_B	ANCESTRAL SPECIES	16	ENSGT00940000163293.c.b	ENSGT00940000157897.a	ENSGT00940000153594.c.e.b	ENSGT00940000167301	ENSGT00390000014349	ENSGT00990000203619.A.b.b.b.b.a.b	ENSGT00940000155122.b	ENSGT00390000002172.B	ENSGT00550000074853	ENSGT00550000074969	ENSGT00940000155143	ENSGT00940000153876.B	ENSGT00940000157468.b	ENSGT00940000165179.a	ENSGT00940000155101.e	ENSGT00950000183174.A ##22	ENSGT00500000044909	ENSGT00950000182888.b	ENSGT00950000182869.e.b.g.b	ENSGT00550000074856.c.a	ENSGT00550000074798.a.a	ENSGT00940000159978	ENSGT00390000009837	ENSGT00390000012630.B	ENSGT00940000155771.c	ENSGT00730000110989.c.a	ENSGT00390000012355.A.a.a.b	ENSGT00940000155679.d	ENSGT00950000182772.B.a.a.g	ENSGT00940000165322	ENSGT00940000180245
Ovalentaria	ANCESTRAL SPECIES	16	ENSGT00940000157897.a	ENSGT00940000153594.c.e.b	ENSGT00940000167301	ENSGT00390000014349	ENSGT00990000203619.A.b.b.b.b.a.b	ENSGT00940000155122.b	ENSGT00390000002172.B	ENSGT00550000074853	ENSGT00550000074969	ENSGT00940000155143	ENSGT00940000153876.B	ENSGT00940000157468.b	ENSGT00940000165179.a	ENSGT00580000081898.b	ENSGT00940000155101.e	ENSGT00950000183174.A ##22	ENSGT00500000044909	ENSGT00950000182888.b	ENSGT00950000182869.e.b.g.b	ENSGT00550000074856.c.a	ENSGT01030000235069	ENSGT00550000074798.a.a	ENSGT00940000155771.c	ENSGT00730000110989.c.a	ENSGT00390000012355.A.a.a.b	ENSGT00940000155679.d	ENSGT00950000182772.B.a.a.g	ENSGT00940000165322	ENSGT00940000180245	ENSGT00940000153654.ve.b	ENSGT00940000154290.b
Ovalentaria_B	ANCESTRAL SPECIES	14	ENSGT00940000157897.a	ENSGT00940000153594.c.e.b	ENSGT00940000167301	ENSGT00390000014349	ENSGT00990000203619.A.b.b.b.b.a.b	ENSGT00940000155122.b	ENSGT00390000002172.B	ENSGT00550000074853	ENSGT00550000074969	ENSGT00940000155143	ENSGT00940000153876.B	ENSGT00940000157468.b	ENSGT00940000165179.a	ENSGT00580000081898.b	ENSGT00940000155101.e	ENSGT00950000183174.A ##22	ENSGT00500000044909	ENSGT00950000182888.b	ENSGT00950000182869.e.b.g.b	ENSGT00550000074856.c.a	ENSGT01030000235069	ENSGT00550000074798.a.a	ENSGT00940000155771.c	ENSGT00730000110989.c.a	ENSGT00390000012355.A.a.a.b	ENSGT00940000155679.d	ENSGT00950000182772.B.a.a.g	ENSGT00940000153654.ve.b	ENSGT00940000154290.b	ENSGT00940000180156	ENSGT00940000167011
Pomacentridae	ANCESTRAL SPECIES	69	ENSGT00450000040324.b.n	ENSGT00390000016526	ENSGT00940000155373	ENSGT00940000164907.b.b	ENSGT00930000151044	ENSGT00940000155122.b	ENSGT00390000002172.B	ENSGT00550000074853	ENSGT00550000074969	ENSGT00940000155143	ENSGT00940000153876.B	ENSGT00940000157468.b	ENSGT00940000165179.a	ENSGT00940000156428	ENSGT00940000155101.e	ENSGT00950000183174.A ##22	ENSGT00500000044909	ENSGT00950000182888.b	ENSGT00950000182869.e.b.g.b	ENSGT00550000074856.c.a	ENSGT01030000235069	ENSGT00550000074798.a.a	ENSGT00940000155771.c	ENSGT00730000110989.c.a	ENSGT00390000012355.A.a.a.b	ENSGT00940000155679.d	ENSGT00950000182772.B.a.a.g	ENSGT00940000153654.ve.b	ENSGT00940000154290.b	ENSGT00940000180156	ENSGT00940000167011
Pomacentridae_A	ANCESTRAL SPECIES	46	ENSGT00450000040324.b.n	ENSGT00390000016526	ENSGT00940000155373	ENSGT00940000164907.b.b	ENSGT00930000151044	ENSGT00940000155122.b	ENSGT00390000002172.B	ENSGT00550000074853	ENSGT00550000074969	ENSGT00940000155143.g	ENSGT00940000153876.B	ENSGT00940000157468.b	ENSGT00940000165179.a	ENSGT00940000156428	ENSGT00940000155101.e	ENSGT00950000183174.A ##22	ENSGT00500000044909	ENSGT00950000182888.b	ENSGT00950000182869.e.b.g.b	ENSGT00550000074856.c.a	ENSGT01030000235069	ENSGT00550000074798.a.a	ENSGT00940000155771.c	ENSGT00730000110989.c.a	ENSGT00390000012355.A.a.a.b	ENSGT00940000155679.d	ENSGT00950000182772.B.a.a.g	ENSGT00940000153654.ve.b	ENSGT00940000154290.b	ENSGT00940000167011	ENSGT00940000156317.w.a
Amphiprion	ANCESTRAL SPECIES	41	ENSGT00450000040324.b.n	ENSGT00390000016526	ENSGT00940000155373	ENSGT00940000164907.b.b	ENSGT00930000151044	ENSGT00940000155122.b	ENSGT00390000002172.B	ENSGT00550000074853	ENSGT00550000074969	ENSGT00940000155143.g	ENSGT00940000153876.B	ENSGT00940000157468.b	ENSGT00940000165179.a	ENSGT00940000156428	ENSGT00940000155101.e	ENSGT00950000183174.A ##22	ENSGT00500000044909	ENSGT00950000182888.b	ENSGT00950000182869.e.b.g.b	ENSGT00550000074856.c.a	ENSGT01030000235069	ENSGT00550000074798.a.a	ENSGT00940000155771.c	ENSGT00730000110989.c.a	ENSGT00390000012355.A.a.a.b	ENSGT00940000155679.d	ENSGT00950000182772.B.a.a.g	ENSGT00940000153654.ve.b	ENSGT00940000154290.b	ENSGT00940000167011	ENSGT00940000156317.w.a
Clown anemonefish	MODERN SPECIES	1333	fpgs (ENSAOCG00000011676)	cdk9 (ENSAOCG00000011721)	lmo4a (ENSAOCG00000011737)	lrsam1 (ENSAOCG00000011866)	ENSAOCG00000011912	ENSAOCG00000011927	bcl7a (ENSAOCG00000011937)	eif2b1 (ENSAOCG00000011972)	ddx55 (ENSAOCG00000012037)	tmed2 (ENSAOCG00000002227)	ptpn11a (ENSAOCG00000012109)	ENSAOCG00000012135	ENSAOCG00000012158	ENSAOCG00000012246	pitpnb (ENSAOCG00000012296)	NAA25 (ENSAOCG00000012402) ##22
Orange clownfish	MODERN SPECIES	7	fpgs (ENSAPEG00000011339)	cdk9 (ENSAPEG00000011302)	lmo4a (ENSAPEG00000011277)	lrsam1 (ENSAPEG00000011190)	ENSAPEG00000011148	ENSAPEG00000011133	bcl7a (ENSAPEG00000011116)	eif2b1 (ENSAPEG00000011091)	ddx55 (ENSAPEG00000011003)	tmed2 (ENSAPEG00000010970)	ptpn11a (ENSAPEG00000010912)	ENSAPEG00000010874	ENSAPEG00000010853	ENSAPEG00000010598	pitpnb (ENSAPEG00000010536)	NAA25 (ENSAPEG00000010428) ##22	brap (ENSAPEG00000010372)	tor4aa (ENSAPEG00000010343)	VDAC3 (ENSAPEG00000009693)	SLC25A1 (ENSAPEG00000009612)	ENSAPEG00000009599	pi4kaa (ENSAPEG00000009510)	MARVELD2 (ENSAPEG00000009496)	oclna (ENSAPEG00000009469)	ANKRD34B (ENSAPEG00000009452)	RASGRF2 (ENSAPEG00000009334)	ckmt2a (ENSAPEG00000009280)	UBE2L5 (ENSAPEG00000009257)	ENSAPEG00000009238	ENSAPEG00000009021	CNNM4 (ENSAPEG00000008963)
Spiny chromis	MODERN SPECIES	627													ENSAPOG00000007644	ENSAPOG00000007616	pitpnb (ENSAPOG00000007506)	NAA25 (ENSAPOG00000007468) ##22	brap (ENSAPOG00000007378)	tor4aa (ENSAPOG00000007326)
Bicolor damselfish	MODERN SPECIES	1622														ENSSPAG00000015382	pitpnb (ENSSPAG00000015494)	NAA25 (ENSSPAG00000015520) ##22	brap (ENSSPAG00000015585)
Cichlidae	ANCESTRAL SPECIES	10	ENSGT00940000157897.a	ENSGT00940000153594.c.e.b	ENSGT00940000167301	ENSGT00390000014349	ENSGT00990000203619.A.b.b.b.b.a.b	ENSGT00940000155122.b	ENSGT00390000002172.B	ENSGT00550000074853	ENSGT00550000074969	ENSGT00940000155143	ENSGT00940000153876.B	ENSGT00940000157468.b	ENSGT00940000165179.a	ENSGT00580000081898.b	ENSGT00940000155101.e	ENSGT00950000183174.A ##22	ENSGT00940000179402	ENSGT00500000044909	ENSGT00950000182888.b	ENSGT00950000182869.e.b.g.b	ENSGT00550000074856.c.a	ENSGT01030000235069	ENSGT00550000074798.a.a	ENSGT00940000155771.c	ENSGT00730000110989.c.a	ENSGT00390000012355.A.a.a.b	ENSGT00940000155679.d	ENSGT00950000182772.B.a.a.g	ENSGT00940000153654.ve.b	ENSGT00940000154290.b	ENSGT00940000167011
Pseudocrenilabrinae	ANCESTRAL SPECIES		ENSGT00940000157897.a	ENSGT00940000153594.c.e.b	ENSGT00940000167301	ENSGT00390000014349	ENSGT00990000203619.A.b.b.b.b.a.b	ENSGT00940000155122.b	ENSGT00390000002172.B	ENSGT00550000074853	ENSGT00550000074969	ENSGT00940000155143	ENSGT00940000153876.B	ENSGT00940000157468.b	ENSGT00940000165179.a	ENSGT00580000081898.b	ENSGT00940000155101.e	ENSGT00950000183174.A ##22	ENSGT00940000179402	ENSGT00500000044909	ENSGT00950000182888.b	ENSGT00950000182869.e.b.g.b	ENSGT00550000074856.c.a	ENSGT01030000235069	ENSGT00550000074798.a.a	ENSGT00940000155771.c	ENSGT00730000110989.c.a	ENSGT00390000012355.A.a.a.b	ENSGT00940000155679.d	ENSGT00950000182772.B.a.a.g	ENSGT00940000153654.ve.b	ENSGT00940000154290.b	ENSGT00940000167011
Pseudocrenilabrinae_A	ANCESTRAL SPECIES		ENSGT00940000157897.a	ENSGT00940000153594.c.e.b	ENSGT00940000167301	ENSGT00390000014349	ENSGT00990000203619.A.b.b.b.b.a.b	ENSGT00940000155122.b	ENSGT00390000002172.B	ENSGT00550000074853	ENSGT00550000074969	ENSGT00940000155143	ENSGT00940000153876.B	ENSGT00940000157468.b	ENSGT00940000165179.a	ENSGT00580000081898.b	ENSGT00940000155101.e	ENSGT00950000183174.A ##22	ENSGT00940000179402	ENSGT00500000044909	ENSGT00950000182888.b	ENSGT00950000182869.e.b.g.b	ENSGT00550000074856.c.a	ENSGT01030000235069	ENSGT00550000074798.a.a	ENSGT00940000155771.c	ENSGT00730000110989.c.a	ENSGT00390000012355.A.a.a.b	ENSGT00940000155679.d	ENSGT00950000182772.B.a.a.g	ENSGT00940000153654.ve.b	ENSGT00940000154290.b	ENSGT00940000167011
Haplochromini	ANCESTRAL SPECIES		ENSGT00940000157897.a	ENSGT00940000153594.c.e.b	ENSGT00940000167301	ENSGT00390000014349	ENSGT00990000203619.A.b.b.b.b.a.b	ENSGT00940000155122.b	ENSGT00390000002172.B	ENSGT00550000074853	ENSGT00550000074969	ENSGT00940000155143	ENSGT00940000153876.B	ENSGT00940000157468.b	ENSGT00940000165179.a	ENSGT00580000081898.b	ENSGT00940000155101.e	ENSGT00950000183174.A ##22	ENSGT00500000044909	ENSGT00950000182888.b	ENSGT00950000182869.e.b.g.b	ENSGT00550000074856.c.a	ENSGT00550000074798.a.a	ENSGT00940000155771.c	ENSGT00730000110989.c.a	ENSGT00390000012355.A.a.a.b	ENSGT00940000155679.d	ENSGT00950000182772.B.a.a.g	ENSGT00940000153654.ve.b	ENSGT00940000154290.b	ENSGT00940000167011	ENSGT00940000156317.w.a	ENSGT00940000161102
Haplochromini_A	ANCESTRAL SPECIES	12	ENSGT00940000153594.c.e.b	ENSGT00940000167301	ENSGT00390000014349	ENSGT00990000203619.A.b.b.b.b.a.b	ENSGT00940000155122.b	ENSGT00390000002172.B	ENSGT00550000074853	ENSGT00550000074969	ENSGT00940000155143	ENSGT00940000153876.B	ENSGT00940000157468.a.a.b	ENSGT00940000157468.b	ENSGT00940000165179.a	ENSGT00580000081898.b	ENSGT00940000155101.e	ENSGT00950000183174.A ##22	ENSGT00500000044909	ENSGT00950000182888.b	ENSGT00950000182869.e.b.g.b	ENSGT00550000074856.c.a	ENSGT00550000074798.a.a	ENSGT00940000155771.c	ENSGT00730000110989.c.a	ENSGT00390000012355.A.a.a.b	ENSGT00940000155679.d	ENSGT00950000182772.B.a.a.g	ENSGT00940000153654.ve.b	ENSGT00940000154290.b	ENSGT00940000167011	ENSGT00940000156317.w.a	ENSGT00940000161102
P. nyererei	MODERN SPECIES	297	ENSPNYG00000003810	ENSPNYG00000003789	ENSPNYG00000003773	bcl7a (ENSPNYG00000003757)	eif2b1 (ENSPNYG00000003720)	ddx55 (ENSPNYG00000003669)	tmed2 (ENSPNYG00000003632)	ptpn11a (ENSPNYG00000003588)	ENSPNYG00000003570	ENSPNYG00000003550	pla2g3 (ENSPNYG00000003516)	ENSPNYG00000003494	ENSPNYG00000003479	ENSPNYG00000003431	pitpnb (ENSPNYG00000003388)	NAA25 (ENSPNYG00000003300) ##22	brap (ENSPNYG00000003247)	tor4aa (ENSPNYG00000003233)	VDAC3 (ENSPNYG00000003208)	SLC25A1 (ENSPNYG00000003185)	ENSPNYG00000003161	pi4kaa (ENSPNYG00000003009)	MARVELD2 (ENSPNYG00000002962)	oclna (ENSPNYG00000002933)	RASGRF2 (ENSPNYG00000002840)	ckmt2a (ENSPNYG00000002808)	UBE2L5 (ENSPNYG00000002781)	ENSPNYG00000002757	ENSPNYG00000002697	CNNM4 (ENSPNYG00000002649)	ENSPNYG00000002620
Haplochromini_B	ANCESTRAL SPECIES	4	ENSGT00940000157897.a	ENSGT00940000153594.c.e.b	ENSGT00940000167301	ENSGT00390000014349	ENSGT00990000203619.A.b.b.b.b.a.b	ENSGT00940000155122.b	ENSGT00390000002172.B	ENSGT00550000074853	ENSGT00550000074969	ENSGT00940000155143	ENSGT00940000153876.B	ENSGT00940000157468.a.a.b	ENSGT00940000157468.b	ENSGT00940000165179.a	ENSGT00940000155101.e	ENSGT00950000183174.A ##22	ENSGT00500000044909	ENSGT00950000182888.b	ENSGT00950000182869.e.b.g.b	ENSGT00550000074856.c.a	ENSGT00550000074798.a.a	ENSGT00940000155771.c	ENSGT00730000110989.c.a	ENSGT00390000012355.A.a.a.b	ENSGT00940000155679.d	ENSGT00950000182772.B.a.a.g	ENSGT00940000153654.ve.b	ENSGT00940000154290.b	ENSGT00940000167011	ENSGT00940000156317.w.a	ENSGT00940000161102
Zebra mbuna	MODERN SPECIES	1110	denr (ENSMZEG00005007982)	ENSMZEG00005007993	ENSMZEG00005008002	ENSMZEG00005008017	bcl7a (ENSMZEG00005008022)	eif2b1 (ENSMZEG00005008030)	ddx55 (ENSMZEG00005008047)	tmed2 (ENSMZEG00005008075)	ptpn11a (ENSMZEG00005008096)	ENSMZEG00005008125	ENSMZEG00005008135	pla2g3 (ENSMZEG00005008142)	ENSMZEG00005008178	ENSMZEG00005008330	pitpnb (ENSMZEG00005008349)	NAA25 (ENSMZEG00005008371) ##22	brap (ENSMZEG00005008433)	tor4aa (ENSMZEG00005008467)	VDAC3 (ENSMZEG00005008479)	SLC25A1 (ENSMZEG00005008502)	pi4kaa (ENSMZEG00005008533)	MARVELD2 (ENSMZEG00005008628)	oclna (ENSMZEG00005008660)	ENSMZEG00005008675	RASGRF2 (ENSMZEG00005008692)	ckmt2a (ENSMZEG00005008745)	UBE2L5 (ENSMZEG00005008762)	ENSMZEG00005008783	ENSMZEG00005008811	CNNM4 (ENSMZEG00005008845)	ENSMZEG00005008874
Eastern happy	MODERN SPECIES	19	denr (ENSACLG00000024786)	ENSACLG00000024783	ENSACLG00000024770	ENSACLG00000024762	bcl7a (ENSACLG00000024751)	eif2b1 (ENSACLG00000024725)	ddx55 (ENSACLG00000024691)	tmed2 (ENSACLG00000024683)	ptpn11a (ENSACLG00000024636)	ENSACLG00000024627	ENSACLG00000024613	ENSACLG00000024599	pla2g3 (ENSACLG00000024563)	ENSACLG00000024361	pitpnb (ENSACLG00000024152)	NAA25 (ENSACLG00000024116) ##22	brap (ENSACLG00000024094)	tor4aa (ENSACLG00000024087)	VDAC3 (ENSACLG00000024053)	SLC25A1 (ENSACLG00000024036)	pi4kaa (ENSACLG00000023874)	MARVELD2 (ENSACLG00000023839)	oclna (ENSACLG00000023765)	ANKRD34B (ENSACLG00000023749)	RASGRF2 (ENSACLG00000023710)	ckmt2a (ENSACLG00000023593)	UBE2L5 (ENSACLG00000023558)	ENSACLG00000023364	ENSACLG00000023341	CNNM4 (ENSACLG00000023318)	ENSACLG00000023280
Burton s mouthbrooder	MODERN SPECIES	690														ENSHBUG00000010211	pitpnb (ENSHBUG00000010250)	NAA25 (ENSHBUG00000010313) ##22	brap (ENSHBUG00000010347)	tor4aa (ENSHBUG00000010368)	VDAC3 (ENSHBUG00000010394)	SLC25A1 (ENSHBUG00000010406)	pi4kaa (ENSHBUG00000010555)	MARVELD2 (ENSHBUG00000010592)	oclna (ENSHBUG00000010691)	ANKRD34B (ENSHBUG00000010700)	RASGRF2 (ENSHBUG00000010788)	ckmt2a (ENSHBUG00000010799)	ENSHBUG00000010814	ENSHBUG00000010953	ENSHBUG00000010994	CNNM4 (ENSHBUG00000001069)
Lyretail cichlid	MODERN SPECIES	419	ccdc62 (ENSNBRG00000018935)	denr (ENSNBRG00000018898)	ENSNBRG00000018875	ENSNBRG00000018855	ENSNBRG00000018840	bcl7a (ENSNBRG00000018831)	eif2b1 (ENSNBRG00000018808)	ddx55 (ENSNBRG00000018748)	tmed2 (ENSNBRG00000018725)	ptpn11a (ENSNBRG00000018685)	ENSNBRG00000018672	ENSNBRG00000018659	pla2g3 (ENSNBRG00000018636)	ENSNBRG00000018514	pitpnb (ENSNBRG00000018496)	NAA25 (ENSNBRG00000018460) ##22	ENSNBRG00000018447	brap (ENSNBRG00000018425)	tor4aa (ENSNBRG00000018410)	zgc:56235 (ENSNBRG00000018386)	SLC25A1 (ENSNBRG00000018370)	ENSNBRG00000018352	pi4kaa (ENSNBRG00000018295)
Nile tilapia	MODERN SPECIES	19	ENSONIG00000015326	ccdc62 (ENSONIG00000015323)	denr (ENSONIG00000015319)	ENSONIG00000021001	ENSONIG00000031937	ENSONIG00000037058	bcl7a (ENSONIG00000015318)	eif2b1 (ENSONIG00000039964)	ddx55 (ENSONIG00000015311)	tmed2 (ENSONIG00000030307)	ptpn11a (ENSONIG00000015302)	ENSONIG00000015299	pla2g3 (ENSONIG00000015298)	ENSONIG00000011309	pitpnb (ENSONIG00000028149)	NAA25 (ENSONIG00000011296) ##22	brap (ENSONIG00000011292)	tor4aa (ENSONIG00000011290)	VDAC3 (ENSONIG00000031190)	ENSONIG00000031339	SLC25A1 (ENSONIG00000011285)	pi4kaa (ENSONIG00000011267)	MARVELD2 (ENSONIG00000011263)	oclna (ENSONIG00000011260)	ANKRD34B (ENSONIG00000041287)	RASGRF2 (ENSONIG00000011247)	ckmt2a (ENSONIG00000011242)	ENSONIG00000011239	ENSONIG00000011238	ENSONIG00000011236	CNNM4 (ENSONIG00000011234)
Midas cichlid	MODERN SPECIES	1117											ENSACIG00000018752	ENSACIG00000018737	ENSACIG00000018722	ENSACIG00000018685	pitpnb (ENSACIG00000018659)	NAA25 (ENSACIG00000018617) ##22	ENSACIG00000018612	brap (ENSACIG00000018590)	tor4aa (ENSACIG00000018583)	ENSACIG00000018568	SLC25A1 (ENSACIG00000018499)	pi4kaa (ENSACIG00000018411)	MARVELD2 (ENSACIG00000018392)	oclna (ENSACIG00000018374)	ENSACIG00000018361	RASGRF2 (ENSACIG00000018314)	ckmt2a (ENSACIG00000018290)	ENSACIG00000018213	ENSACIG00000018169	ENSACIG00000018012
Atherinomorphae	ANCESTRAL SPECIES	17	ENSGT00940000157897.a	ENSGT00940000153594.c.e.b	ENSGT00940000167301	ENSGT00390000014349	ENSGT00990000203619.A.b.b.b.b.a.b	ENSGT00940000155122.b	ENSGT00390000002172.B	ENSGT00550000074853	ENSGT00550000074969	ENSGT00940000155143	ENSGT00940000153876.B	ENSGT00940000157468.b	ENSGT00940000165179.a	ENSGT00580000081898.b	ENSGT00940000155101.e	ENSGT00950000183174.A ##22	ENSGT00500000044909	ENSGT00950000182888.b	ENSGT00950000182869.e.b.g.b	ENSGT00550000074856.c.a	ENSGT01030000235069	ENSGT00550000074798.a.a	ENSGT00940000155771.c	ENSGT00730000110989.c.a	ENSGT00390000012355.A.a.a.b	ENSGT00940000155679.d	ENSGT00950000182772.B.a.a.g	ENSGT00940000180245	ENSGT00940000153654.ve.b	ENSGT00940000154290.b	ENSGT00940000167011
Cyprinodontiformes	ANCESTRAL SPECIES	16	ENSGT00940000163293.c.b	ENSGT00940000157897.a	ENSGT00940000153594.c.e.b	ENSGT00940000167301	ENSGT00390000014349	ENSGT00990000203619.A.b.b.b.b.a.b	ENSGT00940000155122.b	ENSGT00390000002172.B	ENSGT00550000074853	ENSGT00550000074969	ENSGT00940000155143	ENSGT00940000153876.B	ENSGT00940000157468.b	ENSGT00940000165179.a	ENSGT00940000155101.e	ENSGT00950000183174.A ##22	ENSGT00500000044909	ENSGT00950000182888.b	ENSGT00950000182869.e.b.g.b	ENSGT00550000074856.c.a	ENSGT00550000074798.a.a	ENSGT00940000155771.c	ENSGT00730000110989.c.a	ENSGT00390000012355.A.a.a.b	ENSGT00940000155679.d	ENSGT00950000182772.B.a.a.g	ENSGT00940000153654.ve.b	ENSGT00940000154290.b	ENSGT00940000167011	ENSGT00940000156317.w.a	ENSGT00950000182944.A.b.c.e.a
Cyprinodontoidei	ANCESTRAL SPECIES	16	ENSGT00390000011669	ENSGT00940000153594.c.e.b	ENSGT00940000167301	ENSGT00390000014349	ENSGT00990000203619.A.b.b.b.b.a.b	ENSGT00940000155122.b	ENSGT00390000002172.B	ENSGT00550000074853	ENSGT00550000074969	ENSGT00940000155143	ENSGT00940000153876.B	ENSGT00940000157468.b.f	ENSGT00940000165179.a	ENSGT00580000081898.b	ENSGT00940000155101.e	ENSGT00950000183174.A ##22	ENSGT00500000044909	ENSGT00950000182888.b	ENSGT00950000182869.e.b.g.b	ENSGT00550000074856.c.a	ENSGT00550000074798.a.a	ENSGT00940000155771.c	ENSGT00730000110989.c.a	ENSGT00390000012355.A.a.a.b
NAME_4	ANCESTRAL SPECIES		ENSGT00390000011669	ENSGT00940000153594.c.e.b	ENSGT00940000167301	ENSGT00390000014349	ENSGT00990000203619.A.b.b.b.b.a.b	ENSGT00940000155122.b	ENSGT00390000002172.B	ENSGT00550000074853	ENSGT00550000074969	ENSGT00940000155143	ENSGT00940000153876.B	ENSGT00940000157468.b.f	ENSGT00940000165179.a	ENSGT00940000156428	ENSGT00940000155101.e	ENSGT00950000183174.A ##22	ENSGT00500000044909	ENSGT00950000182888.b	ENSGT00950000182869.e.b.g.b	ENSGT00550000074856.c.a	ENSGT00550000074798.a.a	ENSGT00940000155771.c	ENSGT00730000110989.c.a	ENSGT00390000012355.A.a.a.b
Mummichog	MODERN SPECIES	473														ENSFHEG00000020743	pitpnb (ENSFHEG00000020641)	NAA25 (ENSFHEG00000020589) ##22	ENSFHEG00000020453	brap (ENSFHEG00000020426)	tor4aa (ENSFHEG00000020344)	VDAC3 (ENSFHEG00000020335)	SLC25A1 (ENSFHEG00000020295)	pi4kaa (ENSFHEG00000020280)	ENSFHEG00000020090	oclna (ENSFHEG00000020029)	oclna (ENSFHEG00000000897)	ANKRD34B (ENSFHEG00000019985)	ENSFHEG00000019963
Sheepshead minnow	MODERN SPECIES	254	denr (ENSCVAG00000006732)	ENSCVAG00000006706	ENSCVAG00000006693	ENSCVAG00000006679	bcl7a (ENSCVAG00000006665)	eif2b1 (ENSCVAG00000006658)	ddx55 (ENSCVAG00000006635)	ENSCVAG00000006579	tmed2 (ENSCVAG00000006539)	ptpn11a (ENSCVAG00000006513)	ENSCVAG00000006505	pla2g3 (ENSCVAG00000006412)	ENSCVAG00000006399	ENSCVAG00000006373	pitpnb (ENSCVAG00000006356)	NAA25 (ENSCVAG00000006108) ##22	brap (ENSCVAG00000006044)	tor4aa (ENSCVAG00000006009)	zgc:56235 (ENSCVAG00000006002)	SLC25A1 (ENSCVAG00000005971)	ENSCVAG00000005950	pi4kaa (ENSCVAG00000005937)	MARVELD2 (ENSCVAG00000005815)
Poeciliinae	ANCESTRAL SPECIES	12	ENSGT00390000011669	ENSGT00940000153594.c.e.b	ENSGT00940000167301	ENSGT00940000155122.b	ENSGT00990000203619.A.b.b.b.b.a.b	ENSGT00390000014349	ENSGT00390000002172.B	ENSGT00550000074853	ENSGT00550000074969	ENSGT00940000155143	ENSGT00940000153876.B	ENSGT00940000157468.b.f	ENSGT00940000165179.a	ENSGT00580000081898.b	ENSGT00940000155101.e	ENSGT00950000183174.A ##22	ENSGT00500000044909	ENSGT00950000182888.b	ENSGT00950000182869.e.b.g.a.g	ENSGT00390000012355.A.a.a.b	ENSGT00730000110989.c.a	ENSGT00940000155771.c	ENSGT00550000074798.a.a	ENSGT01030000235069	ENSGT00550000074856.c.a	ENSGT00940000155679.d	ENSGT00950000182772.B.a.a.g	ENSGT00940000153654.ve.b	ENSGT00940000154290.b	ENSGT00940000167011	ENSGT00940000156317.w.a
Poecilia	ANCESTRAL SPECIES	12	ENSGT00390000011669	ENSGT00940000153594.c.e.b	ENSGT00940000167301	ENSGT00940000155122.b	ENSGT00990000203619.A.b.b.b.b.a.b	ENSGT00390000014349	ENSGT00390000002172.B	ENSGT00550000074853	ENSGT00550000074969	ENSGT00940000155143	ENSGT00940000153876.B	ENSGT00940000157468.b.f	ENSGT00940000165179.a	ENSGT00580000081898.b	ENSGT00940000155101.e	ENSGT00950000183174.A ##22	ENSGT00500000044909	ENSGT00950000182888.b	ENSGT00950000182869.e.b.g.a.g	ENSGT00390000012355.A.a.a.b	ENSGT00730000110989.c.a	ENSGT00940000155771.c	ENSGT00550000074798.a.a	ENSGT00550000074856.c.a	ENSGT00950000182944.A.b.c.f.a.c.a	ENSGT00950000182944.A.b.c.f.a.d	ENSGT00940000155679.d	ENSGT00950000182772.B.a.a.g	ENSGT00940000153654.ve.b	ENSGT00940000154290.b	ENSGT00940000167011
NAME_6	ANCESTRAL SPECIES	108										ENSGT00940000155143	ENSGT00940000153876.B	ENSGT00940000157468.b.f	ENSGT00940000165179.a	ENSGT00580000081898.b	ENSGT00940000155101.e	ENSGT00950000183174.A ##22	ENSGT00500000044909	ENSGT00950000182888.b	ENSGT00950000182869.e.b.g.a.g	ENSGT00390000012355.A.a.a.b	ENSGT00730000110989.c.a	ENSGT00940000155771.c	ENSGT00550000074798.a.a	ENSGT00550000074856.c.a	ENSGT00950000183116.b.a.a.b.a.b.n.a.a.b	ENSGT00950000182944.A.b.c.e.b	ENSGT00950000182944.A.b.c.f.a.c.a	ENSGT00950000182944.A.b.c.f.a.d	ENSGT00940000155679.d	ENSGT00950000182772.B.a.a.g	ENSGT00940000153654.ve.b
Sailfin molly	MODERN SPECIES	241										tmed2 (ENSPLAG00000021173)	ptpn11a (ENSPLAG00000021184)	ENSPLAG00000021204	pla2g3 (ENSPLAG00000021236)	ENSPLAG00000021251	pitpnb (ENSPLAG00000021281)	NAA25 (ENSPLAG00000021358) ##22	brap (ENSPLAG00000021393)	tor4aa (ENSPLAG00000021408)	ENSPLAG00000021433	ENSPLAG00000021443	oclna (ENSPLAG00000021455)	MARVELD2 (ENSPLAG00000021488)	pi4kaa (ENSPLAG00000021572)	SLC25A1 (ENSPLAG00000021594)	ENSPLAG00000021603	NEU3 (ENSPLAG00000021617)	NEU3 (ENSPLAG00000021631)	NEU3 (ENSPLAG00000021637)	ENSPLAG00000021644
Amazon molly	MODERN SPECIES	686									tmed2 (ENSPFOG00000010069)	ptpn11a (ENSPFOG00000009691)	ENSPFOG00000009351	pla2g3 (ENSPFOG00000009301)	ENSPFOG00000024572	ENSPFOG00000008906	pitpnb (ENSPFOG00000008804)	NAA25 (ENSPFOG00000008401) ##22	tor4aa (ENSPFOG00000008373)	ENSPFOG00000008256	ENSPFOG00000008246	oclna (ENSPFOG00000008118)	MARVELD2 (ENSPFOG00000024364)	pi4kaa (ENSPFOG00000007319)	SLC25A1 (ENSPFOG00000007275)	ENSPFOG00000007218	NEU3 (ENSPFOG00000007202)	ENSPFOG00000007196	RASGRF2 (ENSPFOG00000024630)
Guppy	MODERN SPECIES	442	HIP1R (ENSPREG00000017426)	ENSPREG00000017352	ccdc62 (ENSPREG00000017283)	ENSPREG00000017256	ENSPREG00000017237	denr (ENSPREG00000016795)	bcl7a (ENSPREG00000016721)	eif2b1 (ENSPREG00000016692)	ddx55 (ENSPREG00000016644)	tmed2 (ENSPREG00000016617)	ptpn11a (ENSPREG00000016594)	ENSPREG00000016571	pla2g3 (ENSPREG00000016556)	ENSPREG00000016532	pitpnb (ENSPREG00000016510)	NAA25 (ENSPREG00000016454) ##22	brap (ENSPREG00000016387)	tor4aa (ENSPREG00000016363)	ENSPREG00000016338	ENSPREG00000016333	oclna (ENSPREG00000016314)	MARVELD2 (ENSPREG00000016287)	pi4kaa (ENSPREG00000016173)	SLC25A1 (ENSPREG00000016126)	ENSPREG00000016047	ENSPREG00000016017	ENSPREG00000015971	RASGRF2 (ENSPREG00000015734)	ckmt2a (ENSPREG00000015649)	UBE2L5 (ENSPREG00000015634)	ENSPREG00000015611
Platyfish	MODERN SPECIES	22	ENSXMAG00000023484	ENSXMAG00000019423	denr (ENSXMAG00000019247)	bcl7a (ENSXMAG00000019251)	eif2b1 (ENSXMAG00000027972)	ddx55 (ENSXMAG00000011731)	ENSXMAG00000028412	tmed2 (ENSXMAG00000004445)	ptpn11a (ENSXMAG00000023365)	ENSXMAG00000021744	ENSXMAG00000025197	ENSXMAG00000029628	pla2g3 (ENSXMAG00000004476)	ENSXMAG00000004477	pitpnb (ENSXMAG00000030067)	NAA25 (ENSXMAG00000005930) ##22	brap (ENSXMAG00000005915)	tor4aa (ENSXMAG00000004491)	VDAC3 (ENSXMAG00000004494)	ANKRD34B (ENSXMAG00000019595)	oclna (ENSXMAG00000004510)	MARVELD2 (ENSXMAG00000004516)	pi4kaa (ENSXMAG00000004531)	ENSXMAG00000028527	SLC25A1 (ENSXMAG00000004598)	NEU3 (ENSXMAG00000024524)	ENSXMAG00000021503	ENSXMAG00000023874	ENSXMAG00000022816	ENSXMAG00000029262	ENSXMAG00000026627
Aplocheiloidei	ANCESTRAL SPECIES	183							ENSGT00940000178249	ENSGT00390000002172.B	ENSGT00550000074853	ENSGT00550000074969	ENSGT00940000155143	ENSGT00940000153876.B	ENSGT00940000157468.b	ENSGT00940000165179.a	ENSGT00940000155101.e	ENSGT00950000183174.A ##22	ENSGT00500000044909	ENSGT00950000182888.b	ENSGT00950000182869.e.b.g.b	ENSGT00550000074856.c.a
Mangrove rivulus	MODERN SPECIES	254														ENSKMAG00000015663	SLC25A1 (ENSKMAG00000015636)	NAA25 (ENSKMAG00000015517) ##22	brap (ENSKMAG00000015449)	tor4aa (ENSKMAG00000015436)	ENSKMAG00000015392	pitpnb (ENSKMAG00000015360)	pla2g3 (ENSKMAG00000015337)	ptpn11a (ENSKMAG00000015291)
Oryzias	ANCESTRAL SPECIES	9	ENSGT00940000155657	ENSGT00940000161915.b	ENSGT00940000154856.B.c	ENSGT00950000183041.C	ENSGT00940000166544.a	ENSGT00940000156102.r	ENSGT00390000002172.B	ENSGT00550000074853	ENSGT00550000074969	ENSGT00580000081898.b	ENSGT00940000165179.a	ENSGT00940000157468.b	ENSGT00940000153876.B	ENSGT00940000155143	ENSGT00940000155101.e	ENSGT00950000183174.A ##22	ENSGT00500000044909	ENSGT00950000182888.b	ENSGT00950000182869.e.b.g.b	ENSGT00550000074856.c.a	ENSGT01030000235069	ENSGT00550000074798.a.a	ENSGT00940000155771.c	ENSGT00730000110989.c.a	ENSGT00390000012355.A.a.a.b	ENSGT00940000155679.d	ENSGT00950000182772.B.a.a.g	ENSGT00940000180245	ENSGT00940000153654.ve.b	ENSGT00940000154290.b	ENSGT00940000167011
Oryzias_b	ANCESTRAL SPECIES	4	ENSGT00940000161915.b	ENSGT00940000154856.B.c	ENSGT00950000183041.C	ENSGT00940000166544.a	ENSGT00940000156102.r.g.b	ENSGT00940000156102.r.g.a	ENSGT00390000002172.B	ENSGT00550000074853	ENSGT00550000074969	ENSGT00580000081898.b	ENSGT00940000165179.a	ENSGT00940000157468.b	ENSGT00940000153876.B	ENSGT00940000155143	ENSGT00940000155101.e	ENSGT00950000183174.A ##22	ENSGT00500000044909	ENSGT00950000182888.b	ENSGT00950000182869.e.b.g.b	ENSGT00550000074856.c.a	ENSGT01030000235069	ENSGT00550000074798.a.a	ENSGT00940000155771.c	ENSGT00730000110989.c.a	ENSGT00390000012355.A.a.a.b	ENSGT00940000155679.d	ENSGT00950000182772.B.a.a.g	ENSGT00940000180245	ENSGT00940000153654.ve.b	ENSGT00940000154290.b	ENSGT00940000167011
Indian medaka	MODERN SPECIES	30	ENSOMEG00000004387	ENSOMEG00000004373	bcl7a (ENSOMEG00000004363)	eif2b1 (ENSOMEG00000004349)	ddx55 (ENSOMEG00000023619)	ENSOMEG00000023590	ENSOMEG00000023550	pla2g3 (ENSOMEG00000023535)	ENSOMEG00000023523	ENSOMEG00000023510	ENSOMEG00000023494	ENSOMEG00000023483	ptpn11a (ENSOMEG00000023451)	tmed2 (ENSOMEG00000023436)	ENSOMEG00000023421	NAA25 (ENSOMEG00000023413) ##22	brap (ENSOMEG00000023384)	ENSOMEG00000023373	tor4aa (ENSOMEG00000023366)	VDAC3 (ENSOMEG00000023354)	SLC25A1 (ENSOMEG00000023335)	ENSOMEG00000023317	ENSOMEG00000023313	ENSOMEG00000023307	MARVELD2 (ENSOMEG00000000815)	oclna (ENSOMEG00000023280)	ENSOMEG00000000814	RASGRF2 (ENSOMEG00000023256)	ckmt2a (ENSOMEG00000023240)	ENSOMEG00000023229	UBE2L5 (ENSOMEG00000023226)
Oryzias_a	ANCESTRAL SPECIES	12	ENSGT00410000025802	ENSGT00940000155657	ENSGT00940000161915.b	ENSGT00940000154856.B.c	ENSGT00950000183041.C	ENSGT00940000166544.a	ENSGT00940000156102.r	ENSGT00390000002172.B	ENSGT00550000074853	ENSGT00550000074969	ENSGT00940000165179.a	ENSGT00940000157468.b	ENSGT00940000153876.B	ENSGT00940000155143	ENSGT00940000155101.e	ENSGT00950000183174.A ##22	ENSGT00500000044909	ENSGT00950000182888.b	ENSGT00950000182869.e.b.g.b	ENSGT00550000074856.c.a	ENSGT01030000235069	ENSGT00550000074798.a.a	ENSGT00940000155771.c	ENSGT00730000110989.c.a	ENSGT00390000012355.A.a.a.b	ENSGT00940000155679.d	ENSGT00950000182772.B.a.a.g	ENSGT00940000180245	ENSGT00940000153654.ve.b	ENSGT00940000154290.b	ENSGT00940000167011
Chinese medaka	MODERN SPECIES	3268																ENSOSIG00000001650 ##22
Japanese Medaka HdrR	MODERN SPECIES	3	ENSORLG00000023258	ENSORLG00000024105	zcchc9 (ENSORLG00000020135)	xrcc4 (ENSORLG00000022728)	vcanb (ENSORLG00000027367)	bcl7a (ENSORLG00000000400)	eif2b1 (ENSORLG00000000423)	ddx55 (ENSORLG00000029482)	ENSORLG00000030205	pla2g3 (ENSORLG00000023342)	ENSORLG00000030597	ENSORLG00000000462	ptpn11a (ENSORLG00000000470)	tmed2 (ENSORLG00000025915)	PITPNB (ENSORLG00000000499)	NAA25 (ENSORLG00000024199) ##22	brap (ENSORLG00000000523)	tor4aa (ENSORLG00000000532)	ENSORLG00000000548	SLC25A1 (ENSORLG00000000564)	ENSORLG00000027140	ENSORLG00000025597	ENSORLG00000023950	ENSORLG00000000652	oclna (ENSORLG00000000668)	ENSORLG00000000675	ENSORLG00000000753	ckmt2a (ENSORLG00000000769)	ENSORLG00000026985	UBE2L5 (ENSORLG00000000771)	ENSORLG00000000778
Percomorphaceae_C	ANCESTRAL SPECIES	17	ENSGT00940000157897.a	ENSGT00940000153594.c.e.b	ENSGT00940000167301	ENSGT00390000014349	ENSGT00990000203619.A.b.b.b.b.a.b	ENSGT00940000155122.b	ENSGT00390000002172.B	ENSGT00550000074853	ENSGT00550000074969	ENSGT00940000155143	ENSGT00940000153876.B	ENSGT00940000157468.b	ENSGT00940000165179.a	ENSGT00580000081898.b	ENSGT00940000155101.e	ENSGT00950000183174.A ##22	ENSGT00500000044909	ENSGT00950000182888.b	ENSGT00950000182869.e.b.g.b	ENSGT00550000074856.c.a	ENSGT01030000235069	ENSGT00550000074798.a.a	ENSGT00940000155771.c	ENSGT00730000110989.c.a	ENSGT00390000012355.A.a.a.b	ENSGT00940000155679.d	ENSGT00950000182772.B.a.a.g	ENSGT00940000165322	ENSGT00940000180245	ENSGT00940000153654.ve.b	ENSGT00940000154290.b
Percomorphaceae_D	ANCESTRAL SPECIES	15	ENSGT00940000163293.c.b	ENSGT00940000157897.a	ENSGT00940000153594.c.e.b	ENSGT00940000167301	ENSGT00390000014349	ENSGT00990000203619.A.b.b.b.b.a.b	ENSGT00940000155122.b	ENSGT00390000002172.B	ENSGT00550000074853	ENSGT00550000074969	ENSGT00940000155143	ENSGT00940000153876.B	ENSGT00940000157468.b	ENSGT00940000165179.a	ENSGT00940000155101.e	ENSGT00950000183174.A ##22	ENSGT00500000044909	ENSGT00950000182888.b	ENSGT00950000182869.e.b.g.b	ENSGT00550000074856.c.a	ENSGT01030000235069	ENSGT00550000074798.a.a	ENSGT00940000155771.c	ENSGT00730000110989.c.a	ENSGT00390000012355.A.a.a.b	ENSGT00940000155679.d	ENSGT00950000182772.B.a.a.g	ENSGT00940000165322	ENSGT00940000180245	ENSGT00940000153654.ve.b	ENSGT00940000154290.b
Anabantaria	ANCESTRAL SPECIES	12	ENSGT00940000157897.a	ENSGT00940000153594.c.e.b	ENSGT00940000167301	ENSGT00390000014349	ENSGT00990000203619.A.b.b.b.b.a.b	ENSGT00940000155122.b	ENSGT00390000002172.B	ENSGT00550000074853	ENSGT00550000074969	ENSGT00940000155143	ENSGT00940000153876.B	ENSGT00940000157468.b	ENSGT00940000165179.a	ENSGT00580000081898.b	ENSGT00940000155101.e	ENSGT00950000183174.A ##22	ENSGT00500000044909	ENSGT00950000182888.b	ENSGT00950000182869.e.b.g.b	ENSGT00550000074856.c.a	ENSGT00550000074798.a.a	ENSGT00940000155771.c	ENSGT00730000110989.c.a	ENSGT00390000012355.A.a.a.b	ENSGT00940000155679.d	ENSGT00950000182772.B.a.a.g	ENSGT00940000180245	ENSGT00940000153654.ve.b	ENSGT00940000154290.b	ENSGT00940000167011	ENSGT00940000156317.w.a
Anabantoidei	ANCESTRAL SPECIES	16	ENSGT00940000157897.a	ENSGT00940000153594.c.e.b	ENSGT00940000167301	ENSGT00390000014349	ENSGT00990000203619.A.b.b.b.b.a.b	ENSGT00940000155122.b	ENSGT00390000002172.B	ENSGT00550000074853	ENSGT00550000074969	ENSGT00940000155143	ENSGT00940000153876.B	ENSGT00940000157468.b	ENSGT00940000165179.a	ENSGT00580000081898.b	ENSGT00940000155101.e	ENSGT00950000183174.A ##22	ENSGT00500000044909	ENSGT00950000182888.b	ENSGT00950000182869.e.b.g.b	ENSGT00550000074856.c.a	ENSGT00550000074798.a.a	ENSGT00940000155771.c	ENSGT00730000110989.c.a	ENSGT00390000012355.A.a.a.b	ENSGT00940000155679.d	ENSGT00950000182772.B.a.a.g	ENSGT00940000180245	ENSGT00940000153654.ve.b	ENSGT00940000154290.b	ENSGT00940000167011	ENSGT00940000156317.w.a
Climbing perch	MODERN SPECIES	3	ENSATEG00000004231	ENSATEG00000004198	ENSATEG00000004189	ENSATEG00000004167	ENSATEG00000004144	ENSATEG00000026352	EIF2B1 (ENSATEG00000004100)	ddx55 (ENSATEG00000004029)	tmed2 (ENSATEG00000004001)	ptpn11a (ENSATEG00000003929)	ENSATEG00000003895	pla2g3 (ENSATEG00000003868)	ENSATEG00000003804	ENSATEG00000003788	pitpnb (ENSATEG00000003751)	ENSATEG00000003633 ##22	ENSATEG00000003563	tor4aa (ENSATEG00000003557)	ENSATEG00000003509	ENSATEG00000026557	pi4kaa (ENSATEG00000003318)	ENSATEG00000026011	ENSATEG00000027747	ENSATEG00000002181	ENSATEG00000029355	ENSATEG00000002176	ENSATEG00000002142	ENSATEG00000002136	ENSATEG00000002019	ckmt2a (ENSATEG00000001981)	ENSATEG00000001946
Siamese fighting fish	MODERN SPECIES	3	RILPL1 (ENSBSLG00000012816)	HIP1R (ENSBSLG00000012702)	ccdc62 (ENSBSLG00000012688)	denr (ENSBSLG00000012674)	ENSBSLG00000012671	ENSBSLG00000012667	bcl7a (ENSBSLG00000012660)	eif2b1 (ENSBSLG00000012582)	ddx55 (ENSBSLG00000012490)	tmed2 (ENSBSLG00000012466)	ptpn11a (ENSBSLG00000012018)	ENSBSLG00000011918	pla2g3 (ENSBSLG00000011890)	ENSBSLG00000011457	pitpnb (ENSBSLG00000011385)	NAA25 (ENSBSLG00000010928) ##22	brap (ENSBSLG00000010462)	tor4aa (ENSBSLG00000010451)	zgc:56235 (ENSBSLG00000010344)	SLC25A1 (ENSBSLG00000010106)	MARVELD2 (ENSBSLG00000009559)	oclna (ENSBSLG00000009543)	ENSBSLG00000009539	RASGRF2 (ENSBSLG00000009270)	ckmt2a (ENSBSLG00000008866)	ENSBSLG00000008859	ENSBSLG00000008843	ENSBSLG00000007941	ENSBSLG00000007162	CNNM4 (ENSBSLG00000006739)	CNNM3 (ENSBSLG00000006460)
Zig-zag eel	MODERN SPECIES	3	ENSMAMG00000026904	ENSMAMG00000011413	ENSMAMG00000011400	ENSMAMG00000011386	ENSMAMG00000011374	ENSMAMG00000011343	ENSMAMG00000026605	EIF2B1 (ENSMAMG00000028421)	ddx55 (ENSMAMG00000011297)	tmed2 (ENSMAMG00000011268)	ptpn11a (ENSMAMG00000011232)	ENSMAMG00000027456	pla2g3 (ENSMAMG00000011177)	ENSMAMG00000011140	pitpnb (ENSMAMG00000011115)	ENSMAMG00000011028 ##22	ENSMAMG00000010992	tor4aa (ENSMAMG00000010979)	ENSMAMG00000010956	ENSMAMG00000010926	pi4kaa (ENSMAMG00000010823)	ENSMAMG00000010794	ENSMAMG00000010726	ENSMAMG00000010722	ENSMAMG00000010649	ckmt2a (ENSMAMG00000010633)	ENSMAMG00000010616	ENSMAMG00000010586	ENSMAMG00000010549	ENSMAMG00000010521	ENSMAMG00000010488
Carangaria	ANCESTRAL SPECIES	17	ENSGT00940000157897.a	ENSGT00940000153594.c.e.b	ENSGT00940000167301	ENSGT00390000014349	ENSGT00990000203619.A.b.b.b.b.a.b	ENSGT00940000155122.b	ENSGT00390000002172.B	ENSGT00550000074853	ENSGT00550000074969	ENSGT00940000155143	ENSGT00940000153876.B	ENSGT00940000157468.b	ENSGT00940000165179.a	ENSGT00580000081898.b	ENSGT00940000155101.e	ENSGT00950000183174.A ##22	ENSGT00500000044909	ENSGT00950000182888.b	ENSGT00950000182869.e.b.g.b	ENSGT00550000074856.c.a	ENSGT01030000235069	ENSGT00550000074798.a.a	ENSGT00940000155771.c	ENSGT00730000110989.c.a	ENSGT00390000012355.A.a.a.b	ENSGT00940000155679.d	ENSGT00950000182772.B.a.a.g	ENSGT00940000153654.ve.b	ENSGT00940000154290.b	ENSGT00940000180156	ENSGT00940000167011
Carangaria_A	ANCESTRAL SPECIES	18	ENSGT00940000157897.a	ENSGT00940000153594.c.e.b	ENSGT00940000167301	ENSGT00390000014349	ENSGT00990000203619.A.b.b.b.b.a.b	ENSGT00940000155122.b	ENSGT00390000002172.B	ENSGT00550000074853	ENSGT00550000074969	ENSGT00940000155143	ENSGT00940000153876.B	ENSGT00940000157468.b	ENSGT00940000165179.a	ENSGT00580000081898.b	ENSGT00940000155101.e	ENSGT00950000183174.A ##22	ENSGT00500000044909	ENSGT00950000182888.b	ENSGT00950000182869.e.b.g.b	ENSGT00550000074856.c.a	ENSGT01030000235069	ENSGT00550000074798.a.a	ENSGT00940000155771.c	ENSGT00730000110989.c.a	ENSGT00390000012355.A.a.a.b	ENSGT00940000155679.d	ENSGT00950000182772.B.a.a.g	ENSGT00940000153654.ve.b	ENSGT00940000154290.b	ENSGT00940000180156	ENSGT00940000167011
Seriola	ANCESTRAL SPECIES	53	ENSGT00390000011031	ENSGT00940000154962.A.a.b	ENSGT00390000014349	ENSGT00990000203619.A.b.b.b.b.a.b	ENSGT00940000155122.b	ENSGT00390000002172.B	ENSGT00550000074853	ENSGT00550000074969	ENSGT00940000155143	ENSGT00940000153876.B	ENSGT00940000157468.b	ENSGT00940000165179.a	ENSGT00580000081898.b	ENSGT00940000155101.e	ENSGT01060000248544.a.a.b.a.a.f.p	ENSGT00950000183174.A ##22	ENSGT00500000044909	ENSGT00950000182888.b	ENSGT00950000182869.e.b.g.b	ENSGT00550000074856.c.a	ENSGT01030000235069	ENSGT00550000074798.a.a	ENSGT00940000155771.c	ENSGT00730000110989.c.a	ENSGT00390000012355.A.a.a.b	ENSGT00940000155679.d	ENSGT00950000182772.B.a.a.g	ENSGT00940000153654.ve.b	ENSGT00940000154290.b	ENSGT00940000180156	ENSGT00940000167011
Greater amberjack	MODERN SPECIES	19	denr (ENSSDUG00000023551)	ENSSDUG00000023555	ENSSDUG00000023556	ENSSDUG00000023557	bcl7a (ENSSDUG00000023559)	eif2b1 (ENSSDUG00000023561)	ddx55 (ENSSDUG00000023568)	tmed2 (ENSSDUG00000023573)	ptpn11a (ENSSDUG00000023576)	ENSSDUG00000023578	ENSSDUG00000023579	pla2g3 (ENSSDUG00000023581)	ENSSDUG00000023583	pitpnb (ENSSDUG00000023586)	tnfsf14 (ENSSDUG00000023587)	NAA25 (ENSSDUG00000023588) ##22	brap (ENSSDUG00000023589)	tor4aa (ENSSDUG00000023590)	zgc:56235 (ENSSDUG00000000067)	SLC25A1 (ENSSDUG00000000166)	ENSSDUG00000000171	pi4kaa (ENSSDUG00000000214)	MARVELD2 (ENSSDUG00000000386)	oclna (ENSSDUG00000000419)	ANKRD34B (ENSSDUG00000000432)	RASGRF2 (ENSSDUG00000000440)	ckmt2a (ENSSDUG00000000484)	UBE2L5 (ENSSDUG00000000523)	ENSSDUG00000000554	ENSSDUG00000000663	ENSSDUG00000000691
Yellowtail amberjack	MODERN SPECIES	3031	ENSSLDG00000011411	ENSSLDG00000011399	ENSSLDG00000011382	bcl7a (ENSSLDG00000011370)	eif2b1 (ENSSLDG00000011336)	ddx55 (ENSSLDG00000011299)	tmed2 (ENSSLDG00000011264)	ptpn11a (ENSSLDG00000011212)	ENSSLDG00000011193	ENSSLDG00000011181	pla2g3 (ENSSLDG00000011163)	ENSSLDG00000011149	ENSSLDG00000011126	pitpnb (ENSSLDG00000011103)	tnfsf14 (ENSSLDG00000011090)	NAA25 (ENSSLDG00000010960) ##22	brap (ENSSLDG00000010908)	tor4aa (ENSSLDG00000010890)	ENSSLDG00000010871	SLC25A1 (ENSSLDG00000010848)	pi4kaa (ENSSLDG00000010707)	MARVELD2 (ENSSLDG00000010664)	oclna (ENSSLDG00000010640)	ANKRD34B (ENSSLDG00000010628)	RASGRF2 (ENSSLDG00000010563)	ckmt2a (ENSSLDG00000010522)	UBE2L5 (ENSSLDG00000010498)	ENSSLDG00000010400	ENSSLDG00000010231	CNNM4 (ENSSLDG00000010177)	ENSSLDG00000010126
Barramundi perch	MODERN SPECIES	23	HIP1R (ENSLCAG00010010266)	ccdc62 (ENSLCAG00010010621)	denr (ENSLCAG00010010626)	ENSLCAG00010010635	ENSLCAG00010010651	eif2b1 (ENSLCAG00010010681)	ENSLCAG00010010735	ddx55 (ENSLCAG00010010778)	tmed2 (ENSLCAG00010010947)	ptpn11a (ENSLCAG00010010974)	ENSLCAG00010011065	ENSLCAG00010011160	ENSLCAG00010011181	pitpnb (ENSLCAG00010011260)	tnfsf14 (ENSLCAG00010011277)	NAA25 (ENSLCAG00010011285) ##22	brap (ENSLCAG00010011309)	tor4aa (ENSLCAG00010011353)	zgc:56235 (ENSLCAG00010011357)	SLC25A1 (ENSLCAG00010011375)	pi4kaa (ENSLCAG00010011459)	MARVELD2 (ENSLCAG00010011570)	oclna (ENSLCAG00010011575)	ANKRD34B (ENSLCAG00010011581)	RASGRF2 (ENSLCAG00010011634)	ENSLCAG00010011750	ENSLCAG00010011780	ENSLCAG00010011842	CNNM4 (ENSLCAG00010011999)	ENSLCAG00010012029	ENSLCAG00010012032
Pleuronectoidei	ANCESTRAL SPECIES	7	ENSGT00940000163293.c.b	ENSGT00940000157897.a	ENSGT00940000153594.c.e.b	ENSGT00390000014349	ENSGT00990000203619.A.b.b.b.b.a.b	ENSGT00940000155122.b	ENSGT00390000002172.B	ENSGT00550000074853	ENSGT00550000074969	ENSGT00940000155143	ENSGT00940000153876.B	ENSGT00940000157468.b	ENSGT00940000165179.a	ENSGT00940000156428.m.b	ENSGT00940000155101.e	ENSGT00950000183174.A ##22	ENSGT00500000044909	ENSGT00950000182888.b	ENSGT00950000182869.e.b.g.b	ENSGT00550000074856.c.a	ENSGT00550000074798.a.a	ENSGT00940000155771.c	ENSGT00390000012355.A.a.a.b	ENSGT00730000110989.c.a	ENSGT00940000155679.d	ENSGT00950000182772.B.a.a.g	ENSGT00940000153654.ve.b	ENSGT00940000154290.b	ENSGT00940000167011	ENSGT00940000156317.w.a	ENSGT00940000161102
Tongue sole	MODERN SPECIES	5	RILPL1 (ENSCSEG00000012038)	HIP1R (ENSCSEG00000012059)	denr (ENSCSEG00000012090)	ENSCSEG00000012113	ENSCSEG00000012119	ENSCSEG00000012128	bcl7a (ENSCSEG00000012135)	eif2b1 (ENSCSEG00000012141)	ddx55 (ENSCSEG00000012161)	tmed2 (ENSCSEG00000012180)	ptpn11a (ENSCSEG00000012197)	ENSCSEG00000012216	pla2g3 (ENSCSEG00000012236)	ENSCSEG00000012260	pitpnb (ENSCSEG00000012330)	NAA25 (ENSCSEG00000012364) ##22	brap (ENSCSEG00000012400)	tor4aa (ENSCSEG00000012419)	zgc:56235 (ENSCSEG00000012424)	SLC25A1 (ENSCSEG00000012434)	pi4kaa (ENSCSEG00000012459)	gas1b (ENSCSEG00000012543)	fbp1b (ENSCSEG00000012550)	ENSCSEG00000012569	ENSCSEG00000012575	NPFFR2 (ENSCSEG00000012579)	SLC4A4 (ENSCSEG00000012599)	dck (ENSCSEG00000012658)	mob1bb (ENSCSEG00000012669)	TNPO1 (ENSCSEG00000012674)	fcho2 (ENSCSEG00000012754)
Turbot	MODERN SPECIES		ENSSMAG00000013756	ENSSMAG00000010609	ENSSMAG00000010587	ENSSMAG00000010563	ENSSMAG00000010551	ENSSMAG00000010534	ENSSMAG00000010511	EIF2B1 (ENSSMAG00000010476)	ddx55 (ENSSMAG00000010441)	tmed2 (ENSSMAG00000010428)	ptpn11a (ENSSMAG00000010396)	ENSSMAG00000010362	pla2g3 (ENSSMAG00000010333)	ENSSMAG00000015914	pitpnb (ENSSMAG00000015998)	ENSSMAG00000016014 ##22	ENSSMAG00000016058	tor4aa (ENSSMAG00000016098)	ENSSMAG00000016105	ENSSMAG00000027216	ENSSMAG00000016129	ubqln4 (ENSSMAG00000016169)	zgc:174938 (ENSSMAG00000016164)	lamtor2 (ENSSMAG00000016176)	rab25b (ENSSMAG00000016183)	rab11al (ENSSMAG00000016206)	ENSSMAG00000016216	LMNA (ENSSMAG00000016221)	ENSSMAG00000016239	ENSSMAG00000016329	ENSSMAG00000016340
Eupercaria	ANCESTRAL SPECIES	13	ENSGT00940000163293.c.b	ENSGT00940000157897.a	ENSGT00940000153594.c.e.b	ENSGT00940000167301	ENSGT00390000014349	ENSGT00990000203619.A.b.b.b.b.a.b	ENSGT00940000155122.b	ENSGT00390000002172.B	ENSGT00550000074853	ENSGT00550000074969	ENSGT00940000155143	ENSGT00940000153876.B	ENSGT00940000157468.b	ENSGT00940000165179.a	ENSGT00940000155101.e	ENSGT00950000183174.A ##22	ENSGT00500000044909	ENSGT00950000182888.b	ENSGT00950000182869.e.b.g.b	ENSGT00550000074856.c.a	ENSGT00550000074798.a.a	ENSGT00940000159978	ENSGT00390000009837	ENSGT00390000012630.B	ENSGT00940000155771.c	ENSGT00730000110989.c.a	ENSGT00390000012355.A.a.a.b	ENSGT00940000155679.d	ENSGT00940000180245	ENSGT00950000182772.B.a.a.g	ENSGT00940000153654.ve.b
Tetraodontidae	ANCESTRAL SPECIES	19	ENSGT00940000155449	ENSGT00940000163293.c.b	ENSGT00940000157897.a	ENSGT00940000153594.c.e.b	ENSGT00940000167301	ENSGT00390000014349	ENSGT00990000203619.A.b.b.b.b.a.b	ENSGT00940000155122.b	ENSGT00390000002172.B	ENSGT00550000074853	ENSGT00550000074969	ENSGT00940000157468.b	ENSGT00940000165179.a	ENSGT00940000156428	ENSGT00940000155101.e	ENSGT00950000183174.A ##22	ENSGT00500000044909	ENSGT00950000182888.b	ENSGT00950000182869.e.b.g.b	ENSGT00550000074856.c.a	ENSGT00550000074798.a.a	ENSGT00940000155771.c	ENSGT00730000110989.c.a	ENSGT00390000012355.A.a.a.b	ENSGT00940000155679.d	ENSGT00950000182772.B.a.a.g	ENSGT00940000165322	ENSGT00940000154290.b	ENSGT00940000167011	ENSGT00940000156317.w.a	ENSGT00940000161102
Fugu	MODERN SPECIES	18	MPHOSPH9 (ENSTRUG00000018487)	CDK2AP1 (ENSTRUG00000025872)	sbno1 (ENSTRUG00000018490)	kmt5aa (ENSTRUG00000018497)	RILPL1 (ENSTRUG00000018499)	ccdc62 (ENSTRUG00000022161)	denr (ENSTRUG00000020621)	ENSTRUG00000018511	ENSTRUG00000024096	eif2b1 (ENSTRUG00000018520)	ddx55 (ENSTRUG00000018525)	ENSTRUG00000018535	pla2g3 (ENSTRUG00000018542)	ENSTRUG00000026481	pitpnb (ENSTRUG00000018546)	ENSTRUG00000030820 ##22	brap (ENSTRUG00000018551)	tor4aa (ENSTRUG00000029108)	zgc:56235 (ENSTRUG00000018554)	SLC25A1 (ENSTRUG00000018555)	ENSTRUG00000024634	pi4kaa (ENSTRUG00000026573)	MARVELD2 (ENSTRUG00000018563)	oclna (ENSTRUG00000018564)	ANKRD34B (ENSTRUG00000022958)	RASGRF2 (ENSTRUG00000018567)	ckmt2a (ENSTRUG00000018572)	ENSTRUG00000020733	ENSTRUG00000020228	ENSTRUG00000018575	CNNM4 (ENSTRUG00000018576)
Tetraodon	MODERN SPECIES	19	ENSTNIG00000013511	ENSTNIG00000013512	bcl7a (ENSTNIG00000013513)	eif2b1 (ENSTNIG00000013514)	ddx55 (ENSTNIG00000013515)	dipk1c (ENSTNIG00000005803)	tubb6 (ENSTNIG00000013517)	zgc:162895 (ENSTNIG00000013518)	tmed2 (ENSTNIG00000013520)	lama1 (ENSTNIG00000013519)	ENSTNIG00000013521	ENSTNIG00000011225	ENSTNIG00000013522	ENSTNIG00000013523	pitpnb (ENSTNIG00000013524)	NAA25 (ENSTNIG00000013525) ##22	brap (ENSTNIG00000013526)	tor4aa (ENSTNIG00000013527)	zgc:56235 (ENSTNIG00000013528)	cluap1 (ENSTNIG00000013529)	SLC25A1 (ENSTNIG00000013530)	pi4kaa (ENSTNIG00000013531)	MARVELD2 (ENSTNIG00000013532)	oclna (ENSTNIG00000013533)	ENSTNIG00000013534	RASGRF2 (ENSTNIG00000013535)	ckmt2a (ENSTNIG00000013536)	ENSTNIG00000013538	ENSTNIG00000013539	ENSTNIG00000000143	galnt11 (ENSTNIG00000013540)
Eupecaria_A	ANCESTRAL SPECIES	14	ENSGT00940000163293.c.b	ENSGT00940000157897.a	ENSGT00940000153594.c.e.b	ENSGT00940000167301	ENSGT00390000014349	ENSGT00990000203619.A.b.b.b.b.a.b	ENSGT00940000155122.b	ENSGT00390000002172.B	ENSGT00550000074853	ENSGT00550000074969	ENSGT00940000155143	ENSGT00940000153876.B	ENSGT00940000157468.b	ENSGT00940000165179.a	ENSGT00940000155101.e	ENSGT00950000183174.A ##22	ENSGT00500000044909	ENSGT00950000182888.b	ENSGT00950000182869.e.b.g.b	ENSGT00550000074856.c.a	ENSGT00550000074798.a.a	ENSGT00940000155771.c	ENSGT00730000110989.c.a	ENSGT00390000012355.A.a.a.b	ENSGT00940000155679.d	ENSGT00940000180245	ENSGT00950000182772.B.a.a.g	ENSGT00940000153654.ve.b	ENSGT00940000154290.b	ENSGT00940000167011	ENSGT00940000156317.w.a
Ballan wrasse	MODERN SPECIES	466						ENSLBEG00000014678	ENSLBEG00000014660	ENSLBEG00000014640	tmed2 (ENSLBEG00000014610)	ptpn11a (ENSLBEG00000014581)	ENSLBEG00000014507	pla2g3 (ENSLBEG00000014467)	ENSLBEG00000014448	ENSLBEG00000014393	pitpnb (ENSLBEG00000014351)	NAA25 (ENSLBEG00000014259) ##22	brap (ENSLBEG00000014141)	tor4aa (ENSLBEG00000014125)	VDAC3 (ENSLBEG00000014092)	SLC25A1 (ENSLBEG00000014028)	pi4kaa (ENSLBEG00000013899)	HIC2 (ENSLBEG00000013821)
Eupecaria_B	ANCESTRAL SPECIES	14	ENSGT00940000163293.c.b	ENSGT00940000157897.a	ENSGT00940000153594.c.e.b	ENSGT00940000167301	ENSGT00390000014349	ENSGT00990000203619.A.b.b.b.b.a.b	ENSGT00940000155122.b	ENSGT00390000002172.B	ENSGT00550000074853	ENSGT00550000074969	ENSGT00940000155143	ENSGT00940000153876.B	ENSGT00940000157468.b	ENSGT00940000165179.a	ENSGT00940000155101.e	ENSGT00950000183174.A ##22	ENSGT00500000044909	ENSGT00950000182888.b	ENSGT00950000182869.e.b.g.b	ENSGT00550000074856.c.a	ENSGT00550000074798.a.a	ENSGT00940000159978	ENSGT00390000009837	ENSGT00940000155771.c	ENSGT00730000110989.c.a	ENSGT00390000012355.A.a.a.b	ENSGT00940000155679.d	ENSGT00940000180245	ENSGT00950000182772.B.a.a.g	ENSGT00940000153654.ve.b	ENSGT00940000154290.b
Perciformes	ANCESTRAL SPECIES	16	ENSGT00940000163293.c.b	ENSGT00940000157897.a	ENSGT00940000153594.c.e.b	ENSGT00940000167301	ENSGT00390000014349	ENSGT00990000203619.A.b.b.b.b.a.b	ENSGT00940000155122.b	ENSGT00390000002172.B	ENSGT00550000074853	ENSGT00550000074969	ENSGT00940000155143	ENSGT00940000153876.B	ENSGT00940000157468.b	ENSGT00940000165179.a	ENSGT00940000155101.e	ENSGT00950000183174.A ##22	ENSGT00500000044909	ENSGT00950000182888.b	ENSGT00950000182869.e.b.g.b	ENSGT00550000074856.c.a	ENSGT00550000074798.a.a	ENSGT00940000155771.c	ENSGT00730000110989.c.a	ENSGT00390000012355.A.a.a.b	ENSGT00940000155679.d	ENSGT00950000182772.B.a.a.g	ENSGT00940000153654.ve.b	ENSGT00940000154290.b	ENSGT00940000167011	ENSGT00940000156317.w.a	ENSGT00940000161102
Cottioidei	ANCESTRAL SPECIES	33	ENSGT00940000163293.c.b	ENSGT00940000157897.a	ENSGT00940000153594.c.e.b	ENSGT00940000167301	ENSGT00390000014349	ENSGT00990000203619.A.b.b.b.b.a.b	ENSGT00940000155122.b	ENSGT00390000002172.B	ENSGT00550000074853	ENSGT00550000074969	ENSGT00940000155143	ENSGT00940000153876.B	ENSGT00940000157468.b	ENSGT00940000165179.a	ENSGT00940000155101.e	ENSGT00950000183174.A ##22	ENSGT00500000044909	ENSGT00950000182888.b	ENSGT00950000182869.e.b.g.b	ENSGT00550000074856.c.a	ENSGT00550000074798.a.a	ENSGT00940000155771.c	ENSGT00730000110989.c.a	ENSGT00390000012355.A.a.a.b	ENSGT00940000155679.d	ENSGT00950000182772.B.a.a.g	ENSGT00940000153654.ve.b	ENSGT00940000154290.b	ENSGT00940000167011	ENSGT00940000156317.w.a	ENSGT00940000161102
Lumpfish	MODERN SPECIES	3	zgc:162472 (ENSCLMG00005015624)	HIP1R (ENSCLMG00005015629)	ENSCLMG00005015636	denr (ENSCLMG00005015637)	ENSCLMG00005015641	ENSCLMG00005015642	bcl7a (ENSCLMG00005015649)	eif2b1 (ENSCLMG00005015650)	ddx55 (ENSCLMG00005015676)	tmed2 (ENSCLMG00005015692)	ptpn11a (ENSCLMG00005015696)	ENSCLMG00005016284	ENSCLMG00005016286	pla2g3 (ENSCLMG00005016287)	pitpnb (ENSCLMG00005016293)	NAA25 (ENSCLMG00005016309) ##22	brap (ENSCLMG00005017555)	tor4aa (ENSCLMG00005017608)	zgc:56235 (ENSCLMG00005017610)	SLC25A1 (ENSCLMG00005017619)	ENSCLMG00005017620	pi4kaa (ENSCLMG00005017621)	MARVELD2 (ENSCLMG00005017856)	oclna (ENSCLMG00005017857)	ANKRD34B (ENSCLMG00005017858)	RASGRF2 (ENSCLMG00005017859)	ved (ENSCLMG00005017860)	PURB (ENSCLMG00005017861)	ENSCLMG00005017862	CNNM3 (ENSCLMG00005017863)	CNNM4 (ENSCLMG00005017964)
Stickleback	MODERN SPECIES	185															ENSGACG00000000321	NAA25 (ENSGACG00000000334) ##22	brap (ENSGACG00000000338)	tor4aa (ENSGACG00000000341)	zgc:56235 (ENSGACG00000000342)	SLC25A1 (ENSGACG00000000351)	pi4kaa (ENSGACG00000000354)	ENSGACG00000000361	oclna (ENSGACG00000000363)	ENSGACG00000000365	RASGRF2 (ENSGACG00000000366)	ckmt2a (ENSGACG00000000372)	ENSGACG00000000392	ENSGACG00000000407
Perciformes_a	ANCESTRAL SPECIES	12	ENSGT00940000157897.a	ENSGT00940000153594.c.e.b	ENSGT00940000167301	ENSGT00390000014349	ENSGT00990000203619.A.b.b.b.b.a.b	ENSGT00940000155122.b	ENSGT00390000002172.B	ENSGT00550000074853	ENSGT00550000074969	ENSGT00940000155143	ENSGT00940000153876.B	ENSGT00940000157468.b	ENSGT00940000165179.a	ENSGT00940000156428	ENSGT00940000155101.e	ENSGT00950000183174.A ##22	ENSGT00500000044909	ENSGT00950000182888.b	ENSGT00950000182869.e.b.g.b	ENSGT00550000074856.c.a	ENSGT00550000074798.a.a	ENSGT00940000155771.c	ENSGT00730000110989.c.a	ENSGT00390000012355.A.a.a.b	ENSGT00940000155679.d	ENSGT00950000182772.B.a.a.g	ENSGT00940000153654.ve.b	ENSGT00940000154290.b	ENSGT00940000167011	ENSGT00940000156317.w.a	ENSGT00940000161102
Pike perch	MODERN SPECIES	165	ENSSLUG00000018282	denr (ENSSLUG00000018274)	ENSSLUG00000018270	ENSSLUG00000018266	bcl7a (ENSSLUG00000018262)	eif2b1 (ENSSLUG00000018094)	ddx55 (ENSSLUG00000018047)	tmed2 (ENSSLUG00000018019)	ptpn11a (ENSSLUG00000016964)	ENSSLUG00000016905	ENSSLUG00000016898	ENSSLUG00000016891	pla2g3 (ENSSLUG00000016878)	ENSSLUG00000016625	pitpnb (ENSSLUG00000016411)	NAA25 (ENSSLUG00000016374) ##22	brap (ENSSLUG00000016051)	tor4aa (ENSSLUG00000016005)	ENSSLUG00000015894	SLC25A1 (ENSSLUG00000015243)	pi4kaa (ENSSLUG00000014652)	MARVELD2 (ENSSLUG00000014562)	oclna (ENSSLUG00000014548)	ANKRD34B (ENSSLUG00000014541)	ENSSLUG00000014535	RASGRF2 (ENSSLUG00000012688)	ckmt2a (ENSSLUG00000011377)	ENSSLUG00000011330	ENSSLUG00000011324	ENSSLUG00000011322	ENSSLUG00000011317
Channel bull blenny	MODERN SPECIES	3	RILPL1 (ENSCGOG00000005624)	HIP1R (ENSCGOG00000004261)	ccdc62 (ENSCGOG00000004191)	denr (ENSCGOG00000004119)	ENSCGOG00000004105	ENSCGOG00000004094	bcl7a (ENSCGOG00000004076)	eif2b1 (ENSCGOG00000024319)	ddx55 (ENSCGOG00000024302)	tmed2 (ENSCGOG00000024293)	ptpn11a (ENSCGOG00000024247)	ENSCGOG00000024217	pla2g3 (ENSCGOG00000024208)	ENSCGOG00000024198	pitpnb (ENSCGOG00000024192)	NAA25 (ENSCGOG00000024082) ##22	brap (ENSCGOG00000023993)	tor4aa (ENSCGOG00000023989)	zgc:56235 (ENSCGOG00000023914)	SLC25A1 (ENSCGOG00000023870)	pi4kaa (ENSCGOG00000023836)	MARVELD2 (ENSCGOG00000023830)	ANKRD34B (ENSCGOG00000023828)	oclna (ENSCGOG00000023826)	RASGRF2 (ENSCGOG00000023595)	ckmt2a (ENSCGOG00000023499)	ENSCGOG00000023484	ENSCGOG00000023404	ENSCGOG00000023379	CNNM4 (ENSCGOG00000023377)	purba (ENSCGOG00000023376)
Eupecaria_C	ANCESTRAL SPECIES	9	ENSGT00940000163293.c.b	ENSGT00940000157897.a	ENSGT00940000153594.c.e.b	ENSGT00940000167301	ENSGT00390000014349	ENSGT00990000203619.A.b.b.b.b.a.b	ENSGT00940000155122.b	ENSGT00390000002172.B	ENSGT00550000074853	ENSGT00550000074969	ENSGT00940000155143	ENSGT00940000153876.B	ENSGT00940000157468.b	ENSGT00940000165179.a	ENSGT00940000155101.e	ENSGT00950000183174.A ##22	ENSGT00500000044909	ENSGT00950000182888.b	ENSGT00950000182869.e.b.g.b	ENSGT00550000074856.c.a	ENSGT00550000074798.a.a	ENSGT00940000159978	ENSGT00390000009837	ENSGT00940000155771.c	ENSGT00730000110989.c.a	ENSGT00390000012355.A.a.a.b	ENSGT00940000155679.d	ENSGT00940000180245	ENSGT00950000182772.B.a.a.g	ENSGT00940000153654.ve.b	ENSGT00940000154290.b
Gilthead seabream	MODERN SPECIES	3	ENSSAUG00010007174	ENSSAUG00010007173	ENSSAUG00010007172	ENSSAUG00010007171	ENSSAUG00010007170	ENSSAUG00010007169	eif2b1 (ENSSAUG00010007162)	ddx55 (ENSSAUG00010007148)	tmed2 (ENSSAUG00010007143)	ptpn11a (ENSSAUG00010006644)	ENSSAUG00010006488	pla2g3 (ENSSAUG00010006480)	ENSSAUG00010006478	ENSSAUG00010006477	ENSSAUG00010006450	NAA25 (ENSSAUG00010003489) ##22	brap (ENSSAUG00010003407)	tor4aa (ENSSAUG00010003396)	zgc:56235 (ENSSAUG00010002564)	SLC25A1 (ENSSAUG00010002365)	pi4kaa (ENSSAUG00010002122)	MARVELD2 (ENSSAUG00010002078)	oclna (ENSSAUG00010002073)	ENSSAUG00010002071	RASGRF2 (ENSSAUG00010001968)	ckmt2a (ENSSAUG00010001906)	UBE2L5 (ENSSAUG00010001897)	ENSSAUG00010001761	ENSSAUG00010001716	CNNM4 (ENSSAUG00010001710)	CNNM3 (ENSSAUG00010001644)
Eupercaria_incertae_sedis	ANCESTRAL SPECIES	6	ENSGT00940000155449	ENSGT00940000163293.c.b	ENSGT00940000157897.a	ENSGT00940000153594.c.e.b	ENSGT00390000014349	ENSGT00990000203619.A.b.b.b.b.a.b	ENSGT00390000002172.B	ENSGT00550000074853	ENSGT00550000074969	ENSGT00940000155143	ENSGT00940000153876.B	ENSGT00940000157468.b	ENSGT00940000165179.a	ENSGT00940000156428	ENSGT00940000155101.e	ENSGT00950000183174.A ##22	ENSGT00500000044909	ENSGT00950000182888.b	ENSGT00950000182869.e.b.g.b	ENSGT00550000074856.c.a	ENSGT00550000074798.a.a	ENSGT00940000159978	ENSGT00390000009837	ENSGT00940000155771.c	ENSGT00730000110989.c.a	ENSGT00390000012355.A.a.a.b	ENSGT00940000155679.d	ENSGT00940000180245	ENSGT00950000182772.B.a.a.g	ENSGT00940000153654.ve.b	ENSGT00940000154290.b
Large yellow croaker	MODERN SPECIES	4		RILPL1 (ENSLCRG00005022451)	HIP1R (ENSLCRG00005022454)	denr (ENSLCRG00005022469)	ENSLCRG00005022471	ENSLCRG00005022474	bcl7a (ENSLCRG00005022475)	eif2b1 (ENSLCRG00005022477)	ddx55 (ENSLCRG00005022488)	tmed2 (ENSLCRG00005022495)	ptpn11a (ENSLCRG00005022497)	ENSLCRG00005022598	pla2g3 (ENSLCRG00005022602)	ENSLCRG00005022607	pitpnb (ENSLCRG00005022620)	NAA25 (ENSLCRG00005022647) ##22	brap (ENSLCRG00005022652)	tor4aa (ENSLCRG00005000164)	zgc:56235 (ENSLCRG00005000246)	HIC2 (ENSLCRG00005000462)	pi4kaa (ENSLCRG00005000472)	SLC25A1 (ENSLCRG00005001379)	MARVELD2 (ENSLCRG00005002094)	oclna (ENSLCRG00005002103)	ANKRD34B (ENSLCRG00005002108)	RASGRF2 (ENSLCRG00005002162)	ckmt2a (ENSLCRG00005006852)	ENSLCRG00005007068	ENSLCRG00005007072	ENSLCRG00005007382	CNNM4 (ENSLCRG00005007667)
European seabass	MODERN SPECIES	9	CDK2AP1 (ENSDLAG00005031361)	SBNO1 (ENSDLAG00005012458)	kmt5aa (ENSDLAG00005032838)	ENSDLAG00005030358	ENSDLAG00005012230	ENSDLAG00005012197	ENSDLAG00005012192	EIF2B1 (ENSDLAG00005011652)	ddx55 (ENSDLAG00005011433)	tmed2 (ENSDLAG00005026328)	ptpn11a (ENSDLAG00005010624)	ENSDLAG00005010369	pla2g3 (ENSDLAG00005010347)	ENSDLAG00005010195	pitpnb (ENSDLAG00005026952)	ENSDLAG00005010117 ##22	ENSDLAG00005009844	tor4aa (ENSDLAG00005031169)	ENSDLAG00005033209	ENSDLAG00005028190	pi4kaa (ENSDLAG00005009084)	ENSDLAG00005009060	ENSDLAG00005009032	ENSDLAG00005034049	ENSDLAG00005006442	ckmt2a (ENSDLAG00005006396)	ENSDLAG00005003567	ENSDLAG00005006537	ENSDLAG00005005477	ENSDLAG00005006044	ENSDLAG00005005330
Osteoglossiformes	ANCESTRAL SPECIES	53							ENSGT00940000156430.b	ENSGT00550000074969	ENSGT00940000155143	ENSGT00940000153876.B.a	ENSGT00940000157468.a.a.a.b	ENSGT00940000165179.a	ENSGT00940000156428.d	ENSGT00940000155101.e	ENSGT00390000001777	ENSGT00950000183174.A ##22	ENSGT00940000158875	ENSGT00940000158571	ENSGT00940000163892.C.a.b	ENSGT01050000244941.A	ENSGT00940000158226	ENSGT00940000159886	ENSGT00390000009872	ENSGT00390000003050.a	ENSGT00940000165521.a	ENSGT00940000158864	ENSGT00390000016188	ENSGT00390000012082	ENSGT00940000157302	ENSGT00940000155805	ENSGT00510000047648
P. kingsleyae	MODERN SPECIES	9					ENSPKIG00000023843	ENSPKIG00000023832	ENSPKIG00000023746	ddx55 (ENSPKIG00000023661)	TMED2 (ENSPKIG00000023639)	ptpn11a (ENSPKIG00000023620)	RPH3A (ENSPKIG00000023577)	pla2g3 (ENSPKIG00000023555)	TTC28 (ENSPKIG00000023480)	pitpnb (ENSPKIG00000023432)	MN1 (ENSPKIG00000023418)	NAA25 (ENSPKIG00000023372) ##22	PLPPR1 (ENSPKIG00000023329)	GRIN3A (ENSPKIG00000023292)	ENSPKIG00000023272	ENSPKIG00000023258	lpar1 (ENSPKIG00000023252)	MUSK (ENSPKIG00000023201)	rassf6 (ENSPKIG00000023173)	si:busm1-57f23.1 (ENSPKIG00000023163)	ENSPKIG00000023130	ENSPKIG00000023113	cntfr (ENSPKIG00000023063)	galt (ENSPKIG00000022988)	sigmar1 (ENSPKIG00000022940)	katnal2 (ENSPKIG00000022906)	hdhd2 (ENSPKIG00000022879)
Asian bonytongue	MODERN SPECIES	21	GAL3ST1 (ENSSFOG00015027770)	srsf9 (ENSSFOG00015017303)	triap1 (ENSSFOG00015026510)	ENSSFOG00015032195	FAM222A (ENSSFOG00015025412)	NXPE4 (ENSSFOG00015017365)	ENSSFOG00015017407	ddx55 (ENSSFOG00015017496)	tmed2 (ENSSFOG00015017552)	ptpn11a (ENSSFOG00015017592)	RPH3A (ENSSFOG00015017626)	pla2g3 (ENSSFOG00015017643)	TTC28 (ENSSFOG00015017661)	pitpnb (ENSSFOG00015017744)	MN1 (ENSSFOG00015017775)	NAA25 (ENSSFOG00015017785) ##22	PLPPR1 (ENSSFOG00015017856)	GRIN3A (ENSSFOG00015017869)	ENSSFOG00015017889	lpar1 (ENSSFOG00015017919)	MUSK (ENSSFOG00015017924)	rassf6 (ENSSFOG00015017954)	si:busm1-57f23.1 (ENSSFOG00015028130)	tmem267 (ENSSFOG00015017982)	ENSSFOG00015018015	cntfr (ENSSFOG00015018038)	galt (ENSSFOG00015018081)	sigmar1 (ENSSFOG00015018122)	katnal2 (ENSSFOG00015027723)	hdhd2 (ENSSFOG00015018148)	ier3ip1 (ENSSFOG00015018167)
Spotted gar	MODERN SPECIES	659	CCDC157 (ENSLOCG00000008237)	slc7a4 (ENSLOCG00000008226)	dgcr6 (ENSLOCG00000008215)	RASAL1 (ENSLOCG00000008183)	DTX1 (ENSLOCG00000008172)	ENSLOCG00000008161	ENSLOCG00000008145	ewsr1b (ENSLOCG00000008118)	ENSLOCG00000008106	ap1b1 (ENSLOCG00000008079)	osbp2b (ENSLOCG00000008057)	ENSLOCG00000008042	ENSLOCG00000008033	tcn2 (ENSLOCG00000008019)	slc35e4 (ENSLOCG00000008006)	NAA25 (ENSLOCG00000007981) ##22	tmem116 (ENSLOCG00000007971)	ACAD10 (ENSLOCG00000007955)	aldh2.2 (ENSLOCG00000007931)	brap (ENSLOCG00000007908)	atxn2 (ENSLOCG00000007880)	SH2B3 (ENSLOCG00000007870)	ENSLOCG00000018157	INPP5J (ENSLOCG00000007855)	zgc:153044 (ENSLOCG00000018156)	MN1 (ENSLOCG00000007833)	pitpnb (ENSLOCG00000007813)	TTC28 (ENSLOCG00000007797)	ENSLOCG00000007784	sdsl (ENSLOCG00000007758)	SDS (ENSLOCG00000007734)
Reedfish	MODERN SPECIES	9	ENSECRG00000020636	morc2 (ENSECRG00000020664)	ENSECRG00000020720	ENSECRG00000020737	ENSECRG00000020755	selenom (ENSECRG00000020766)	ENSECRG00000020781	INPP5J (ENSECRG00000020804)	ENSECRG00000020827	RPH3A (ENSECRG00000020847)	ptpn11a (ENSECRG00000020935)	ENSECRG00000020980	rpl6 (ENSECRG00000020989)	HECTD4 (ENSECRG00000021020)	TRAFD1 (ENSECRG00000021074)	NAA25 (ENSECRG00000021105) ##22	ERP29 (ENSECRG00000021140)	ENSECRG00000021190	ERP29 (ENSECRG00000021198)	TMEM116 (ENSECRG00000021213)	ENSECRG00000021245	aldh2.2 (ENSECRG00000021295)	ACAD10 (ENSECRG00000021321)	brap (ENSECRG00000021363)	atxn2 (ENSECRG00000021390)	SH2B3 (ENSECRG00000021430)	ENSECRG00000021440	ENSECRG00000021448	ENSECRG00000021465	myl2b (ENSECRG00000021483)	ENSECRG00000021510
Sarcopterygii	ANCESTRAL SPECIES	19											ENSGT00940000157468.a.b	ENSGT00940000153876.B	ENSGT00390000003682	ENSGT00910000144226	ENSGT00530000063869.B	ENSGT00950000183174.A ##22	ENSGT00390000018566	ENSGT00940000154089.b	ENSGT00940000156240	ENSGT00940000161620	ENSGT00500000044909	ENSGT00940000156812	ENSGT00950000183191.b	ENSGT00940000162791	ENSGT00940000166026	ENSGT00940000160241	ENSGT00940000155578	ENSGT00940000153116.B	ENSGT00950000183252	ENSGT00940000153472.a.a	ENSGT00940000159403
Coelacanth	MODERN SPECIES	534										RPH3A (ENSLACG00000000113)	PTPN11 (ENSLACG00000006352)	ENSLACG00000007120	ENSLACG00000007726	ENSLACG00000009455	TRAFD1 (ENSLACG00000009850)	NAA25 (ENSLACG00000010192) ##22	ERP29 (ENSLACG00000010686)	MAPKAPK5 (ENSLACG00000011061)	ALDH2 (ENSLACG00000011798)	ACAD10 (ENSLACG00000012029)	BRAP (ENSLACG00000012330)	ATXN2 (ENSLACG00000012531)	ENSLACG00000013144	SH2B3 (ENSLACG00000013202)	ENSLACG00000014343	CUX2 (ENSLACG00000014413)	MYL2 (ENSLACG00000015349)	ENSLACG00000015386	PPP1CC (ENSLACG00000015464)	TCTN1 (ENSLACG00000015624)	PPTC7 (ENSLACG00000015725)
Tetrapoda	ANCESTRAL SPECIES	10	ENSGT00940000155403.a	ENSGT00390000018635.d	ENSGT00940000156133	ENSGT00940000156488	ENSGT00390000017134	ENSGT00390000015813	ENSGT00900000141107	ENSGT00390000008873	ENSGT01020000230438.C	ENSGT00940000159434	ENSGT00940000157468.a.b	ENSGT00940000153876.B	ENSGT00390000003682	ENSGT00910000144226	ENSGT00530000063869.B	ENSGT00950000183174.A ##22	ENSGT00390000018566	ENSGT00390000003209	ENSGT00940000154089.b	ENSGT00940000156240	ENSGT00940000161620	ENSGT00500000044909	ENSGT00940000156812	ENSGT00950000183191.b	ENSGT00940000162791	ENSGT00940000160241	ENSGT00940000155578	ENSGT00940000153116.B	ENSGT00950000183252	ENSGT00940000153472.a.a	ENSGT00940000159403
Anura	ANCESTRAL SPECIES	4	ENSGT00940000158519	ENSGT00940000159357	ENSGT00390000005653	ENSGT00940000155845	ENSGT00390000017221	ENSGT01050000246614	ENSGT00940000158419	ENSGT00390000008031	ENSGT01020000230438.C	ENSGT00940000159434	ENSGT00940000157468.a.b	ENSGT00940000153876.B	ENSGT00390000003682	ENSGT00910000144226	ENSGT00530000063869.B	ENSGT00950000183174.A ##22	ENSGT00390000018566	ENSGT00390000003209	ENSGT00940000154089.b	ENSGT00940000155578	ENSGT00940000160241	ENSGT00940000162791	ENSGT00950000183191.b	ENSGT00940000156812	ENSGT00500000044909	ENSGT00940000161620	ENSGT00940000156240	ENSGT00940000153472.a.a	ENSGT00940000159403	ENSGT00570000079101.a.b	ENSGT00390000011937
Frog	MODERN SPECIES		fbxw8 (ENSXETG00000022351)	ENSXETG00000038273	rnft2 (ENSXETG00000011475)	spring1 (ENSXETG00000028044)	ENSXETG00000045867	cmklr1 (ENSXETG00000011474)	ENSXETG00000047657	wscd2 (ENSXETG00000011472)	rph3a (ENSXETG00000011467)	ptpn11 (ENSXETG00000004305)	rpl6 (ENSXETG00000004304)	hectd4 (ENSXETG00000004302)	ENSXETG00000045464	trafd1 (ENSXETG00000026235)	ENSXETG00000048276	naa25 (ENSXETG00000004301) ##22	erp29 (ENSXETG00000004300)	tmem116 (ENSXETG00000040164)	mapkapk5 (ENSXETG00000011682)	myl2 (ENSXETG00000011683)	cux2 (ENSXETG00000011684)	pheta1 (ENSXETG00000046364)	sh2b3 (ENSXETG00000040614)	atxn2 (ENSXETG00000020912)	brap (ENSXETG00000020916)	acad10 (ENSXETG00000020919)	aldh2 (ENSXETG00000020930)	ppp1cc (ENSXETG00000024480)	hvcn1 (ENSXETG00000020934)	tctn1 (ENSXETG00000024479)	pptc7 (ENSXETG00000020935)
Leishan spiny toad	MODERN SPECIES		PAM (ENSLLEG00000004959)	ENSLLEG00000005141	ENSLLEG00000005147	ENSLLEG00000005156	PPIP5K2 (ENSLLEG00000005281)	MACIR (ENSLLEG00000006555)	ENSLLEG00000006565	NUDT12 (ENSLLEG00000006591)	ENSLLEG00000006633	ENSLLEG00000006670	ENSLLEG00000006739	ENSLLEG00000006746	ENSLLEG00000006757	HECTD4 (ENSLLEG00000006862)	ENSLLEG00000008158	NAA25 (ENSLLEG00000009039) ##22	ENSLLEG00000009371	ENSLLEG00000009405	ERP29 (ENSLLEG00000009449)	ENSLLEG00000009544	ENSLLEG00000009567	TMEM116 (ENSLLEG00000009660)	ENSLLEG00000010130	MAPKAPK5 (ENSLLEG00000010162)	MYL2 (ENSLLEG00000010312)	CUX2 (ENSLLEG00000010397)	ENSLLEG00000010532	ENSLLEG00000010549	PHETA1 (ENSLLEG00000010563)	ENSLLEG00000010597	SH2B3 (ENSLLEG00000010623)
Amniota	ANCESTRAL SPECIES	16	ENSGT00940000155403.a	ENSGT00390000018635.d	ENSGT00940000156133	ENSGT00940000156488	ENSGT00390000017134	ENSGT00390000015813	ENSGT00900000141107	ENSGT00390000008873	ENSGT01020000230438.C	ENSGT00940000159434	ENSGT00940000157468.a.b	ENSGT00940000153876.B	ENSGT00390000003682	ENSGT00910000144226	ENSGT00530000063869.B	ENSGT00950000183174.A ##22	ENSGT00390000018566	ENSGT00390000003209	ENSGT00940000154089.b	ENSGT00940000156240	ENSGT00940000161620	ENSGT00500000044909	ENSGT00940000156812	ENSGT00950000183191.b	ENSGT00940000162791	ENSGT00940000160241	ENSGT00940000155578	ENSGT00940000153116.B	ENSGT00940000153472.a.a	ENSGT00940000159403	ENSGT00570000079101.a.b
Sauria	ANCESTRAL SPECIES	11	ENSGT00940000156133	ENSGT00940000156488	ENSGT01030000235326	ENSGT00390000017134	ENSGT00390000015813	ENSGT00900000141107	ENSGT00390000008873	ENSGT01020000230438.C	ENSGT00940000159434	ENSGT00940000157468.a.b	ENSGT00940000157468.a.a.b	ENSGT00940000153876.B	ENSGT00390000003682	ENSGT00910000144226	ENSGT00530000063869.B	ENSGT00950000183174.A ##22	ENSGT00390000018566	ENSGT00390000003209	ENSGT00940000161067.y.a	ENSGT00940000154089.b	ENSGT00940000156240	ENSGT00940000161620	ENSGT00500000044909	ENSGT00940000156812	ENSGT00950000183191.b	ENSGT00940000162791	ENSGT00940000160241	ENSGT00940000155578	ENSGT00940000153116.B	ENSGT00940000153472.a.a	ENSGT00940000159403
Archelosauria	ANCESTRAL SPECIES	14	ENSGT00940000156133	ENSGT00940000156488	ENSGT01030000235326	ENSGT00390000017134	ENSGT00390000015813	ENSGT00900000141107	ENSGT00390000008873	ENSGT01020000230438.C	ENSGT00940000159434	ENSGT00940000157468.a.b	ENSGT00940000157468.a.a.b	ENSGT00940000153876.B	ENSGT00390000003682	ENSGT00910000144226	ENSGT00530000063869.B	ENSGT00950000183174.A ##22	ENSGT00390000018566	ENSGT00390000003209	ENSGT00940000161067.y.a	ENSGT00940000154089.b	ENSGT00940000156240	ENSGT00940000161620	ENSGT00500000044909	ENSGT00940000156812	ENSGT00950000183191.b	ENSGT00940000162791	ENSGT00940000160241	ENSGT00940000155578	ENSGT00940000153116.B	ENSGT00940000153472.a.a	ENSGT00940000159403
Archosauria	ANCESTRAL SPECIES	19	ENSGT00390000018635.d	ENSGT00940000156133	ENSGT00940000156488	ENSGT01030000235326	ENSGT00390000017134	ENSGT00390000015813	ENSGT00900000141107	ENSGT00390000008873	ENSGT01020000230438.C	ENSGT00940000159434	ENSGT00940000157468.a.b	ENSGT00940000153876.B	ENSGT00390000003682	ENSGT00910000144226	ENSGT00530000063869.B	ENSGT00950000183174.A ##22	ENSGT00390000018566	ENSGT00390000003209	ENSGT00940000161067.y.a	ENSGT00940000154089.b	ENSGT00940000156240	ENSGT00940000164635	ENSGT00500000044909	ENSGT00940000156812	ENSGT00950000183191.b	ENSGT00940000162791	ENSGT00940000160241	ENSGT00940000155578	ENSGT00940000153116.B	ENSGT00940000153472.a.a	ENSGT00940000159403
Aves	ANCESTRAL SPECIES	19	ENSGT00390000018635.d	ENSGT00940000156133	ENSGT00940000156488	ENSGT01030000235326	ENSGT00390000017134	ENSGT00390000015813	ENSGT00900000141107	ENSGT00390000008873	ENSGT01020000230438.C	ENSGT00940000159434	ENSGT00940000157468.a.b	ENSGT00940000153876.B	ENSGT00390000003682	ENSGT00910000144226	ENSGT00530000063869.B	ENSGT00950000183174.A ##22	ENSGT00390000018566	ENSGT00390000003209	ENSGT00940000161067.y.a.b	ENSGT00940000154089.b	ENSGT00940000156240	ENSGT00940000164635	ENSGT00500000044909	ENSGT00940000156812	ENSGT00950000183191.b	ENSGT00940000162791	ENSGT00940000160241	ENSGT00940000155578	ENSGT00940000153116.B	ENSGT00940000153472.a.a	ENSGT00940000159403
Neognathae	ANCESTRAL SPECIES	15	ENSGT00390000018635.d	ENSGT00940000156133	ENSGT00940000156488	ENSGT01030000235326	ENSGT00390000017134	ENSGT00390000015813	ENSGT00900000141107	ENSGT00390000008873	ENSGT01020000230438.C	ENSGT00940000159434	ENSGT00940000157468.a.b	ENSGT00940000153876.B	ENSGT00390000003682	ENSGT00910000144226	ENSGT00530000063869.B	ENSGT00950000183174.A ##22	ENSGT00390000018566	ENSGT00390000003209	ENSGT00940000161067.y.a.b	ENSGT00940000161067.y.a.a	ENSGT00940000154089.b	ENSGT00940000156240	ENSGT00940000164635	ENSGT00500000044909	ENSGT00940000156812	ENSGT00950000183191.b	ENSGT00940000162791	ENSGT00940000160241	ENSGT00940000155578	ENSGT00940000153116.B	ENSGT00940000153472.a.a
Neognathae_b	ANCESTRAL SPECIES	27	ENSGT00390000018635.d	ENSGT00940000156133	ENSGT00940000156488	ENSGT01030000235326	ENSGT00390000017134	ENSGT00390000015813	ENSGT00900000141107	ENSGT00390000008873	ENSGT01020000230438.C	ENSGT00940000159434	ENSGT00940000157468.a.b	ENSGT00940000153876.B	ENSGT00390000003682	ENSGT00910000144226	ENSGT00530000063869.B	ENSGT00950000183174.A ##22	ENSGT00390000018566	ENSGT00390000003209	ENSGT00940000161067.y.a.b	ENSGT00940000161067.y.a.a	ENSGT00940000154089.b	ENSGT00940000156240	ENSGT00940000164635	ENSGT00500000044909	ENSGT00940000156812	ENSGT00950000183191.b	ENSGT00940000162791	ENSGT00940000160241	ENSGT00940000155578	ENSGT00950000183252	ENSGT00940000153472.a.a
Passeriformes	ANCESTRAL SPECIES	15	ENSGT00390000018635.d	ENSGT00940000156133	ENSGT00940000156488	ENSGT01030000235326	ENSGT00390000017134	ENSGT00390000015813	ENSGT00900000141107	ENSGT00390000008873	ENSGT01020000230438.C	ENSGT00940000159434	ENSGT00940000157468.a.b	ENSGT00940000153876.B	ENSGT00390000003682	ENSGT00910000144226	ENSGT00530000063869.B	ENSGT00950000183174.A ##22	ENSGT00390000018566	ENSGT00390000003209	ENSGT00940000154089.b	ENSGT00940000156240	ENSGT00940000164635	ENSGT00500000044909	ENSGT00940000156812	ENSGT00950000183191.b	ENSGT00940000162791	ENSGT00940000160241	ENSGT00940000155578	ENSGT00950000183252	ENSGT00940000153472.a.a	ENSGT00940000159403	ENSGT00570000079101.a.b
Great tit	MODERN SPECIES	6	DAO (ENSPMJG00000008241)	SSH1 (ENSPMJG00000008240)	CORO1C (ENSPMJG00000008238)	ENSPMJG00000008211	TMEM119 (ENSPMJG00000008209)	ISCU (ENSPMJG00000008208)	SART3 (ENSPMJG00000008207)	FICD (ENSPMJG00000008206)	CMKLR1 (ENSPMJG00000008205)	WSCD2 (ENSPMJG00000008201)	RPH3A (ENSPMJG00000007634)	PTPN11 (ENSPMJG00000007627)	RPL6 (ENSPMJG00000007621)	HECTD4 (ENSPMJG00000005963)	TRAFD1 (ENSPMJG00000005941)	NAA25 (ENSPMJG00000004730) ##22	ERP29 (ENSPMJG00000004716)	TMEM116 (ENSPMJG00000004709)	MAPKAPK5 (ENSPMJG00000004707)	ALDH2 (ENSPMJG00000004701)	ENSPMJG00000004700	ENSPMJG00000004643	BRAP (ENSPMJG00000004624)	ATXN2 (ENSPMJG00000004592)	SH2B3 (ENSPMJG00000004589)	PHETA1 (ENSPMJG00000004586)	CUX2 (ENSPMJG00000004543)	MYL2 (ENSPMJG00000004527)	ENSPMJG00000004508	PPP1CC (ENSPMJG00000004502)	HVCN1 (ENSPMJG00000004496)
Passeriformes_d	ANCESTRAL SPECIES	14	ENSGT00390000018635.d	ENSGT00940000156133	ENSGT00940000156488	ENSGT01030000235326	ENSGT00390000017134	ENSGT00390000015813	ENSGT00900000141107	ENSGT00390000008873	ENSGT01020000230438.C	ENSGT00940000159434	ENSGT00940000157468.a.b	ENSGT00940000153876.B	ENSGT00390000003682	ENSGT00910000144226	ENSGT00530000063869.B	ENSGT00950000183174.A ##22	ENSGT00390000018566	ENSGT00390000003209	ENSGT00940000154089.b	ENSGT00940000156240	ENSGT00940000164635	ENSGT00500000044909	ENSGT00940000156812	ENSGT00950000183191.b	ENSGT00940000162791	ENSGT00940000160241	ENSGT00940000155578	ENSGT00950000183252	ENSGT00940000153472.a.a	ENSGT00940000159403	ENSGT00570000079101.a.b
Flycatcher	MODERN SPECIES	6	USP30 (ENSFALG00000008848)	SVOP (ENSFALG00000008855)	DAO (ENSFALG00000008856)	SSH1 (ENSFALG00000008860)	CORO1C (ENSFALG00000008863)	TMEM119 (ENSFALG00000008871)	ISCU (ENSFALG00000024300)	ENSFALG00000008894	FICD (ENSFALG00000008911)	WSCD2 (ENSFALG00000008913)	RPH3A (ENSFALG00000008915)	PTPN11 (ENSFALG00000008936)	RPL6 (ENSFALG00000008951)	HECTD4 (ENSFALG00000008963)	ENSFALG00000025315	NAA25 (ENSFALG00000008983) ##22	ENSFALG00000008985	TMEM116 (ENSFALG00000008987)	MAPKAPK5 (ENSFALG00000008992)	ENSFALG00000008995	ALDH2 (ENSFALG00000008993)	BRAP (ENSFALG00000008997)	ATXN2 (ENSFALG00000009001)	SH2B3 (ENSFALG00000027683)	PHETA1 (ENSFALG00000009017)	CUX2 (ENSFALG00000009019)	MYL2 (ENSFALG00000025854)	ENSFALG00000009036	PPP1CC (ENSFALG00000012216)	HVCN1 (ENSFALG00000009047)	TCTN1 (ENSFALG00000009048)
Passeriformes_g	ANCESTRAL SPECIES	14	ENSGT00390000018635.d	ENSGT00940000156133	ENSGT00940000156488	ENSGT01030000235326	ENSGT00390000017134	ENSGT00390000015813	ENSGT00900000141107	ENSGT00390000008873	ENSGT01020000230438.C	ENSGT00940000159434	ENSGT00940000157468.a.b	ENSGT00940000153876.B	ENSGT00390000003682	ENSGT00910000144226	ENSGT00530000063869.B	ENSGT00950000183174.A ##22	ENSGT00390000018566	ENSGT00390000003209	ENSGT00940000154089.b	ENSGT00940000156240	ENSGT00940000164635	ENSGT00500000044909	ENSGT00940000156812	ENSGT00950000183191.b	ENSGT00940000162791	ENSGT00940000160241	ENSGT00940000155578	ENSGT00950000183252	ENSGT00940000153472.a.a	ENSGT00940000159403	ENSGT00570000079101.a.b
Passeroidea	ANCESTRAL SPECIES	14	ENSGT00390000018635.d	ENSGT00940000156133	ENSGT00940000156488	ENSGT01030000235326	ENSGT00390000017134	ENSGT00390000015813	ENSGT00900000141107	ENSGT00390000008873	ENSGT01020000230438.C	ENSGT00940000159434	ENSGT00940000157468.a.b	ENSGT00940000153876.B	ENSGT00390000003682	ENSGT00910000144226	ENSGT00530000063869.B	ENSGT00950000183174.A ##22	ENSGT00390000018566	ENSGT00390000003209	ENSGT00940000154089.b	ENSGT00940000156240	ENSGT00940000164635	ENSGT00500000044909	ENSGT00940000156812	ENSGT00950000183191.b	ENSGT00940000162791	ENSGT00940000160241	ENSGT00940000155578	ENSGT00950000183252	ENSGT00940000153472.a.a	ENSGT00940000159403	ENSGT00570000079101.a.b
Zebra finch	MODERN SPECIES	6	DAO (ENSTGUG00000007011)	SSH1 (ENSTGUG00000006998)	CORO1C (ENSTGUG00000006956)	ENSTGUG00000020580	TMEM119 (ENSTGUG00000006954)	ISCU (ENSTGUG00000006939)	SART3 (ENSTGUG00000006905)	FICD (ENSTGUG00000023805)	CMKLR1 (ENSTGUG00000023011)	WSCD2 (ENSTGUG00000020040)	RPH3A (ENSTGUG00000006837)	PTPN11 (ENSTGUG00000006795)	RPL6 (ENSTGUG00000020774)	HECTD4 (ENSTGUG00000006699)	ENSTGUG00000006695	NAA25 (ENSTGUG00000006656) ##22	ERP29 (ENSTGUG00000018809)	TMEM116 (ENSTGUG00000027811)	MAPKAPK5 (ENSTGUG00000006628)	ALDH2 (ENSTGUG00000006552)	ENSTGUG00000006542	BRAP (ENSTGUG00000006520)	ATXN2 (ENSTGUG00000006497)	SH2B3 (ENSTGUG00000006491)	PHETA1 (ENSTGUG00000006490)	CUX2 (ENSTGUG00000006470)	MYL2 (ENSTGUG00000006454)	ENSTGUG00000006449	PPP1CC (ENSTGUG00000006425)	HVCN1 (ENSTGUG00000006416)	TCTN1 (ENSTGUG00000006407)
Common canary	MODERN SPECIES	18	DAO (ENSSCAG00000007148)	SSH1 (ENSSCAG00000007153)	CORO1C (ENSSCAG00000007162)	TMEM119 (ENSSCAG00000007169)	ISCU (ENSSCAG00000007177)	ENSSCAG00000007187	FICD (ENSSCAG00000007193)	CMKLR1 (ENSSCAG00000007198)	WSCD2 (ENSSCAG00000007204)	RPH3A (ENSSCAG00000007239)	ENSSCAG00000007286	PTPN11 (ENSSCAG00000007313)	RPL6 (ENSSCAG00000007439)	HECTD4 (ENSSCAG00000007547)	ENSSCAG00000008169	NAA25 (ENSSCAG00000008176) ##22	ERP29 (ENSSCAG00000008191)	TMEM116 (ENSSCAG00000008195)	ENSSCAG00000008204	ALDH2 (ENSSCAG00000008272)	ENSSCAG00000008629	BRAP (ENSSCAG00000008732)	ATXN2 (ENSSCAG00000008742)	SH2B3 (ENSSCAG00000008751)	PHETA1 (ENSSCAG00000008753)	CUX2 (ENSSCAG00000008759)	MYL2 (ENSSCAG00000008790)	ENSSCAG00000008793	PPP1CC (ENSSCAG00000008812)	HVCN1 (ENSSCAG00000008817)	TCTN1 (ENSSCAG00000008818)
Medium ground finch	MODERN SPECIES	65	USP30 (ENSGFOG00000009621)	SVOP (ENSGFOG00000009602)	DAO (ENSGFOG00000009558)	SSH1 (ENSGFOG00000009536)	CORO1C (ENSGFOG00000009527)	TMEM119 (ENSGFOG00000009521)	SART3 (ENSGFOG00000009387)	FICD (ENSGFOG00000009356)	CMKLR1 (ENSGFOG00000009348)	WSCD2 (ENSGFOG00000009343)	RPH3A (ENSGFOG00000008786)	PTPN11 (ENSGFOG00000008746)	RPL6 (ENSGFOG00000008735)	HECTD4 (ENSGFOG00000008647)	TRAFD1 (ENSGFOG00000008623)	NAA25 (ENSGFOG00000008602) ##22	ERP29 (ENSGFOG00000008590)	TMEM116 (ENSGFOG00000008578)	MAPKAPK5 (ENSGFOG00000008566)	ALDH2 (ENSGFOG00000002271)	ENSGFOG00000001953	BRAP (ENSGFOG00000001939)	ATXN2 (ENSGFOG00000001904)	SH2B3 (ENSGFOG00000001891)	CUX2 (ENSGFOG00000001871)	MYL2 (ENSGFOG00000001862)	PPP1CC (ENSGFOG00000001854)	HVCN1 (ENSGFOG00000001847)	ENSGFOG00000001836	ENSGFOG00000001825	PPTC7 (ENSGFOG00000001821)
Neognathae_c	ANCESTRAL SPECIES	16	ENSGT00390000018635.d	ENSGT00940000156133	ENSGT00940000156488	ENSGT01030000235326	ENSGT00390000017134	ENSGT00390000015813	ENSGT00900000141107	ENSGT00390000008873	ENSGT01020000230438.C	ENSGT00940000159434	ENSGT00940000157468.a.b	ENSGT00940000153876.B	ENSGT00390000003682	ENSGT00910000144226	ENSGT00530000063869.B	ENSGT00950000183174.A ##22	ENSGT00390000018566	ENSGT00390000003209	ENSGT00940000161067.y.a.b	ENSGT00940000161067.y.a.a	ENSGT00940000154089.b	ENSGT00940000156240	ENSGT00940000164635	ENSGT00500000044909	ENSGT00940000156812	ENSGT00950000183191.b	ENSGT00940000162791	ENSGT00940000160241	ENSGT00940000155578	ENSGT00940000153116.B	ENSGT00940000153472.a.a
Kakapo	MODERN SPECIES	3	DAO (ENSSHBG00005006570)	SSH1 (ENSSHBG00005006682)	CORO1C (ENSSHBG00005007615)	ENSSHBG00005007629	TMEM119 (ENSSHBG00005007637)	ISCU (ENSSHBG00005007646)	SART3 (ENSSHBG00005007662)	FICD (ENSSHBG00005007694)	CMKLR1 (ENSSHBG00005007708)	WSCD2 (ENSSHBG00005007724)	RPH3A (ENSSHBG00005007800)	PTPN11 (ENSSHBG00005008193)	RPL6 (ENSSHBG00005008203)	HECTD4 (ENSSHBG00005008384)	ENSSHBG00005008737	NAA25 (ENSSHBG00005008761) ##22	ERP29 (ENSSHBG00005008781)	TMEM116 (ENSSHBG00005008796)	ENSSHBG00005008807	ENSSHBG00005008811	MAPKAPK5 (ENSSHBG00005008825)	ALDH2 (ENSSHBG00005008860)	ENSSHBG00005008882	BRAP (ENSSHBG00005008905)	ATXN2 (ENSSHBG00005009006)	SH2B3 (ENSSHBG00005009251)	PHETA1 (ENSSHBG00005009259)	CUX2 (ENSSHBG00005009289)	MYL2 (ENSSHBG00005009349)	CCDC63 (ENSSHBG00005009408)	PPP1CC (ENSSHBG00005009675)
Golden eagle	MODERN SPECIES	25	DAO (ENSACCG00020003460)	SSH1 (ENSACCG00020003483)	CORO1C (ENSACCG00020003525)	ENSACCG00020003559	TMEM119 (ENSACCG00020003575)	ISCU (ENSACCG00020003597)	SART3 (ENSACCG00020003624)	FICD (ENSACCG00020003661)	CMKLR1 (ENSACCG00020003685)	WSCD2 (ENSACCG00020003701)	RPH3A (ENSACCG00020003722)	PTPN11 (ENSACCG00020003755)	RPL6 (ENSACCG00020003779)	HECTD4 (ENSACCG00020003943)	TRAFD1 (ENSACCG00020004057)	NAA25 (ENSACCG00020004075) ##22	ERP29 (ENSACCG00020004089)	TMEM116 (ENSACCG00020004099)	ENSACCG00020004120	ENSACCG00020004151	MAPKAPK5 (ENSACCG00020004166)	ALDH2 (ENSACCG00020004181)	ENSACCG00020004206	BRAP (ENSACCG00020004230)	ATXN2 (ENSACCG00020004642)	SH2B3 (ENSACCG00020004819)	PHETA1 (ENSACCG00020004836)	CUX2 (ENSACCG00020004874)	MYL2 (ENSACCG00020004946)	ENSACCG00020004965	PPP1CC (ENSACCG00020005005)
Galloanserae	ANCESTRAL SPECIES	13	ENSGT00390000018635.d	ENSGT00940000156133	ENSGT00940000156488	ENSGT01030000235326	ENSGT00390000017134	ENSGT00390000015813	ENSGT00900000141107	ENSGT00390000008873	ENSGT01020000230438.C	ENSGT00940000159434	ENSGT00940000157468.a.b	ENSGT00940000153876.B	ENSGT00390000003682	ENSGT00910000144226	ENSGT00530000063869.B	ENSGT00950000183174.A ##22	ENSGT00390000018566	ENSGT00390000003209	ENSGT00940000161067.y.a.b	ENSGT00940000161067.y.a.a	ENSGT00940000154089.b	ENSGT00940000164542	ENSGT00940000156240	ENSGT00940000164635	ENSGT00500000044909	ENSGT00940000156812	ENSGT00950000183191.b	ENSGT00940000162791	ENSGT00940000160241	ENSGT00940000155578	ENSGT00940000153116.B
Anatidae	ANCESTRAL SPECIES	25	ENSGT00940000155403.a	ENSGT00390000018635.d	ENSGT00940000156133	ENSGT00940000156488	ENSGT00390000017134	ENSGT00390000015813	ENSGT00900000141107	ENSGT00390000008873	ENSGT01020000230438.C	ENSGT00940000159434	ENSGT00940000157468.a.b	ENSGT00940000153876.B	ENSGT00390000003682	ENSGT00910000144226	ENSGT00530000063869.B	ENSGT00950000183174.A ##22	ENSGT00390000018566	ENSGT00390000003209	ENSGT00940000161067.y.a.b	ENSGT00940000154089.b	ENSGT00940000161067.y.a.a	ENSGT00940000164542	ENSGT00940000156240	ENSGT00940000164635	ENSGT00500000044909	ENSGT00940000156812	ENSGT00950000183191.b.n	ENSGT00940000162791	ENSGT00940000160241	ENSGT00940000155578	ENSGT00950000183252
Pink-footed goose	MODERN SPECIES	68	SVOP (ENSABRG00000021623)	DAO (ENSABRG00000021595)	SSH1 (ENSABRG00000021411)	CORO1C (ENSABRG00000021367)	TMEM119 (ENSABRG00000021366)	ISCU (ENSABRG00000021364)	SART3 (ENSABRG00000021359)	FICD (ENSABRG00000021356)	CMKLR1 (ENSABRG00000021354)	WSCD2 (ENSABRG00000021350)	RPH3A (ENSABRG00000021204)	PTPN11 (ENSABRG00000021118)	RPL6 (ENSABRG00000021099)	HECTD4 (ENSABRG00000020161)	ENSABRG00000019985	NAA25 (ENSABRG00000019807) ##22	ENSABRG00000019794	TMEM116 (ENSABRG00000019792)	ENSABRG00000019788	MAPKAPK5 (ENSABRG00000019764)	ENSABRG00000018213	BRAP (ENSABRG00000018059)	ATXN2 (ENSABRG00000017643)	ENSABRG00000017584	SH2B3 (ENSABRG00000017581)	PHETA1 (ENSABRG00000017577)	CUX2 (ENSABRG00000017540)	MYL2 (ENSABRG00000017508)	ENSABRG00000017495	PPP1CC (ENSABRG00000017473)	HVCN1 (ENSABRG00000017471)
Duck	MODERN SPECIES	7	ALKBH2 (ENSAPLG00000015118)	USP30 (ENSAPLG00000015086)	SVOP (ENSAPLG00000004265)	DAO (ENSAPLG00000018816)	SSH1 (ENSAPLG00000005232)	TMEM119 (ENSAPLG00000022467)	ISCU (ENSAPLG00000006183)	SART3 (ENSAPLG00000006205)	FICD (ENSAPLG00000002137)	CMKLR1 (ENSAPLG00000002139)	ENSAPLG00000021891	PTPN11 (ENSAPLG00000015307)	RPL6 (ENSAPLG00000015787)	HECTD4 (ENSAPLG00000015991)	TRAFD1 (ENSAPLG00000008457)	NAA25 (ENSAPLG00000008475) ##22	ERP29 (ENSAPLG00000008539)	TMEM116 (ENSAPLG00000008542)	ENSAPLG00000001333	ENSAPLG00000029703	ENSAPLG00000008559	ALDH2 (ENSAPLG00000008579)	ENSAPLG00000008641	BRAP (ENSAPLG00000008647)	ATXN2 (ENSAPLG00000008724)	SH2B3 (ENSAPLG00000031069)	PHETA1 (ENSAPLG00000021182)	CUX2 (ENSAPLG00000004382)	MYL2 (ENSAPLG00000004324)	ENSAPLG00000004230	PPP1CC (ENSAPLG00000008831)
Phasianidae	ANCESTRAL SPECIES	13	ENSGT00390000018635.d	ENSGT00940000156133	ENSGT00940000156488	ENSGT01030000235326	ENSGT00390000017134	ENSGT00390000015813	ENSGT00900000141107	ENSGT00390000008873	ENSGT01020000230438.C	ENSGT00940000159434	ENSGT00940000157468.a.b	ENSGT00940000153876.B	ENSGT00390000003682	ENSGT00910000144226	ENSGT00530000063869.B	ENSGT00950000183174.A ##22	ENSGT00390000018566	ENSGT00390000003209	ENSGT00940000161067.y.a.b	ENSGT00940000161067.y.a.a	ENSGT00940000154089.b	ENSGT00940000156240	ENSGT00940000164635	ENSGT00500000044909	ENSGT00940000156812	ENSGT00950000183191.b	ENSGT00940000162791	ENSGT00940000160241	ENSGT00940000155578	ENSGT00940000153116.B	ENSGT00940000153472.a.a
Japanese quail	MODERN SPECIES	6	SVOP (ENSCJPG00005007365)	DAO (ENSCJPG00005007361)	SSH1 (ENSCJPG00005007358)	CORO1C (ENSCJPG00005007357)	ENSCJPG00005007356	ISCU (ENSCJPG00005007353)	SART3 (ENSCJPG00005007349)	FICD (ENSCJPG00005007348)	CMKLR1 (ENSCJPG00005007346)	WSCD2 (ENSCJPG00005007345)	RPH3A (ENSCJPG00005007344)	PTPN11 (ENSCJPG00005007342)	RPL6 (ENSCJPG00005007341)	HECTD4 (ENSCJPG00005007340)	ENSCJPG00005007337	NAA25 (ENSCJPG00005007035) ##22	ERP29 (ENSCJPG00005007033)	TMEM116 (ENSCJPG00005007032)	ENSCJPG00005007031	ENSCJPG00005007030	MAPKAPK5 (ENSCJPG00005007020)	ALDH2 (ENSCJPG00005000690)	ENSCJPG00005000235	BRAP (ENSCJPG00005000220)	ATXN2 (ENSCJPG00005000186)	SH2B3 (ENSCJPG00005000176)	PHETA1 (ENSCJPG00005000165)	CUX2 (ENSCJPG00005000129)	MYL2 (ENSCJPG00005000099)	CCDC63 (ENSCJPG00005000088)	PPP1CC (ENSCJPG00005000071)
Phasianidae_b	ANCESTRAL SPECIES	13	ENSGT00390000018635.d	ENSGT00940000156133	ENSGT00940000156488	ENSGT01030000235326	ENSGT00390000017134	ENSGT00390000015813	ENSGT00900000141107	ENSGT00390000008873	ENSGT01020000230438.C	ENSGT00940000159434	ENSGT00940000157468.a.b	ENSGT00940000153876.B	ENSGT00390000003682	ENSGT00910000144226	ENSGT00530000063869.B	ENSGT00950000183174.A ##22	ENSGT00390000018566	ENSGT00390000003209	ENSGT00940000161067.y.a.b	ENSGT00940000161067.y.a.a	ENSGT00940000154089.b	ENSGT00940000156240	ENSGT00940000164635	ENSGT00500000044909	ENSGT00940000156812	ENSGT00950000183191.b	ENSGT00940000162791	ENSGT00940000160241	ENSGT00940000155578	ENSGT00940000153116.B	ENSGT00940000153472.a.a
Chicken	MODERN SPECIES	6	USP30 (ENSGALG00010021458)	SVOP (ENSGALG00010022628)	DAO (ENSGALG00010022614)	SSH1 (ENSGALG00010022559)	TMEM119 (ENSGALG00010022533)	ISCU (ENSGALG00010022525)	CORO1C (ENSGALG00010022497)	SART3 (ENSGALG00010022467)	FICD (ENSGALG00010022441)	CMKLR1 (ENSGALG00010022421)	WSCD2 (ENSGALG00010022309)	RPH3A (ENSGALG00010020719)	PTPN11 (ENSGALG00010020701)	RPL6 (ENSGALG00010020685)	HECTD4 (ENSGALG00010025980)	NAA25 (ENSGALG00010025976) ##22	TRAFD1 (ENSGALG00010025971)	ERP29 (ENSGALG00010025938)	ADAM20L (ENSGALG00010026694)	TMEM116 (ENSGALG00010025924)	ENSGALG00010025903	MAPKAPK5 (ENSGALG00010025897)	ALDH2 (ENSGALG00010025886)	ENSGALG00010025837	BRAP (ENSGALG00010025831)	ATXN2 (ENSGALG00010025805)	SH2B3 (ENSGALG00010025743)	FAM109A (ENSGALG00010025720)	CUX2 (ENSGALG00010025666)	MYL2 (ENSGALG00010025639)	CCDC63 (ENSGALG00010025631)
Turkey	MODERN SPECIES	8	DAO (ENSMGAG00000005897)	SSH1 (ENSMGAG00000005877)	CORO1C (ENSMGAG00000005787)	ENSMGAG00000018442	TMEM119 (ENSMGAG00000005784)	ISCU (ENSMGAG00000018993)	SART3 (ENSMGAG00000005746)	FICD (ENSMGAG00000005737)	CMKLR1 (ENSMGAG00000015475)	WSCD2 (ENSMGAG00000016597)	RPH3A (ENSMGAG00000005615)	PTPN11 (ENSMGAG00000005721)	RPL6 (ENSMGAG00000005710)	HECTD4 (ENSMGAG00000005581)	TRAFD1 (ENSMGAG00000005539)	NAA25 (ENSMGAG00000005479) ##22	ENSMGAG00000020372	TMEM116 (ENSMGAG00000005436)	ENSMGAG00000015469	ENSMGAG00000015466	MAPKAPK5 (ENSMGAG00000005400)	ALDH2 (ENSMGAG00000005346)	ENSMGAG00000005343	BRAP (ENSMGAG00000005321)	ATXN2 (ENSMGAG00000005288)	SH2B3 (ENSMGAG00000005275)	PHETA1 (ENSMGAG00000020346)	CUX2 (ENSMGAG00000005225)	MYL2 (ENSMGAG00000005114)	CCDC63 (ENSMGAG00000005099)	PPP1CC (ENSMGAG00000005079)
African ostrich	MODERN SPECIES	176											ENSSCUG00000001537	PTPN11 (ENSSCUG00000001540)	RPL6 (ENSSCUG00000001542)	HECTD4 (ENSSCUG00000001617)	TRAFD1 (ENSSCUG00000001755)	NAA25 (ENSSCUG00000001758) ##22	ERP29 (ENSSCUG00000001762)	TMEM116 (ENSSCUG00000001763)	ENSSCUG00000001765	ENSSCUG00000001768	ALDH2 (ENSSCUG00000001773)	BRAP (ENSSCUG00000001781)	ATXN2 (ENSSCUG00000001793)	ENSSCUG00000001807
Australian saltwater crocodile	MODERN SPECIES	40	SVOP (ENSCPRG00005015613)	DAO (ENSCPRG00005015607)	SSH1 (ENSCPRG00005015592)	CORO1C (ENSCPRG00005015584)	TMEM119 (ENSCPRG00005015580)	ISCU (ENSCPRG00005015579)	SART3 (ENSCPRG00005015574)	FICD (ENSCPRG00005015570)	CMKLR1 (ENSCPRG00005015568)	WSCD2 (ENSCPRG00005015563)	RPH3A (ENSCPRG00005015558)	PTPN11 (ENSCPRG00005015550)	RPL6 (ENSCPRG00005015546)	HECTD4 (ENSCPRG00005014967)	ENSCPRG00005014814	NAA25 (ENSCPRG00005014635) ##22	ERP29 (ENSCPRG00005014604)	TMEM116 (ENSCPRG00005014602)	ENSCPRG00005014600	ENSCPRG00005014549	ALDH2 (ENSCPRG00005014194)	ACAD10 (ENSCPRG00005013582)	BRAP (ENSCPRG00005013446)	ATXN2 (ENSCPRG00005013260)	SH2B3 (ENSCPRG00005013204)	PHETA1 (ENSCPRG00005013202)	CUX2 (ENSCPRG00005013187)	ENSCPRG00005013171	CCDC63 (ENSCPRG00005013158)	PPP1CC (ENSCPRG00005013154)	HVCN1 (ENSCPRG00005013144)
Cryptodira	ANCESTRAL SPECIES	28	ENSGT00940000156133	ENSGT00940000156488	ENSGT01030000235326	ENSGT00390000017134	ENSGT00390000015813	ENSGT00900000141107	ENSGT00390000008873	ENSGT01020000230438.C	ENSGT00940000159434	ENSGT00940000157468.a.b	ENSGT00940000157468.a.a.b	ENSGT00940000153876.B	ENSGT00390000003682	ENSGT00910000144226	ENSGT00530000063869.B	ENSGT00950000183174.A ##22	ENSGT00390000018566	ENSGT00390000003209	ENSGT00940000161067.y.a.d	ENSGT00940000161067.y.a.c	ENSGT00940000154089.b	ENSGT00940000156240	ENSGT00940000161620	ENSGT00500000044909	ENSGT00940000156812	ENSGT00950000183191.b	ENSGT00940000162791	ENSGT00940000160241	ENSGT00940000155578	ENSGT00940000153116.B	ENSGT00940000153472.a.a
Testudinoidea	ANCESTRAL SPECIES	26	ENSGT00940000156488	ENSGT00940000163343	ENSGT01030000235326	ENSGT00390000017134	ENSGT00390000015813	ENSGT00900000141107	ENSGT00390000008873	ENSGT01020000230438.C	ENSGT00940000159434	ENSGT00940000157468.a.b	ENSGT00940000157468.a.a.b	ENSGT00940000153876.B	ENSGT00390000003682	ENSGT00910000144226	ENSGT00530000063869.B	ENSGT00950000183174.A ##22	ENSGT00390000018566	ENSGT00390000003209	ENSGT00940000161067.y.a.d	ENSGT00940000161067.y.a.c	ENSGT00940000154089.b	ENSGT00940000156240	ENSGT00940000161620	ENSGT00500000044909	ENSGT00940000156812	ENSGT00950000183191.b	ENSGT00940000162791	ENSGT00940000160241	ENSGT00940000155578	ENSGT00940000153116.B	ENSGT00940000153472.a.a
Emydidae	ANCESTRAL SPECIES	37	ENSGT00940000156488	ENSGT00940000163343	ENSGT01030000235326	ENSGT00390000017134	ENSGT00390000015813	ENSGT00900000141107	ENSGT00390000008873	ENSGT01020000230438.C	ENSGT00940000159434	ENSGT00940000157468.a.b	ENSGT00940000157468.a.a.b	ENSGT00940000153876.B	ENSGT00390000003682	ENSGT00910000144226	ENSGT00530000063869.B	ENSGT00950000183174.A ##22	ENSGT00390000018566	ENSGT00390000003209	ENSGT00940000161067.y.a.d	ENSGT00940000161067.y.a.c	ENSGT00940000154089.b	ENSGT00940000156240	ENSGT00940000161620	ENSGT00500000044909	ENSGT00940000156812	ENSGT00950000183191.b	ENSGT00940000162791	ENSGT00940000160241	ENSGT00940000155578	ENSGT00940000153116.B	ENSGT00940000153472.a.a
Three-toed box turtle	MODERN SPECIES	109	CORO1C (ENSTMTG00000021966)	ZBED2 (ENSTMTG00000021973)	ENSTMTG00000021975	TMEM119 (ENSTMTG00000021979)	SART3 (ENSTMTG00000021985)	FICD (ENSTMTG00000022006)	CMKLR1 (ENSTMTG00000022008)	WSCD2 (ENSTMTG00000022013)	ENSTMTG00000022022	ENSTMTG00000022030	ENSTMTG00000022038	PTPN11 (ENSTMTG00000022044)	RPL6 (ENSTMTG00000022053)	HECTD4 (ENSTMTG00000022207)	TRAFD1 (ENSTMTG00000022525)	NAA25 (ENSTMTG00000022529) ##22	ERP29 (ENSTMTG00000022535)	TMEM116 (ENSTMTG00000014855)	ENSTMTG00000014862	MAPKAPK5 (ENSTMTG00000014889)	ALDH2 (ENSTMTG00000014909)	ACAD10 (ENSTMTG00000014934)	BRAP (ENSTMTG00000014971)	ATXN2 (ENSTMTG00000015048)	SH2B3 (ENSTMTG00000015594)	PHETA1 (ENSTMTG00000015609)	CUX2 (ENSTMTG00000015632)	MYL2 (ENSTMTG00000015724)	CCDC63 (ENSTMTG00000015765)	PPP1CC (ENSTMTG00000015794)	HVCN1 (ENSTMTG00000015804)
painted turtle	MODERN SPECIES	2406	DAO (ENSCPBG00000006802)	SSH1 (ENSCPBG00000006788)	ZBED2 (ENSCPBG00000006777)	CORO1C (ENSCPBG00000006748)	TMEM119 (ENSCPBG00000006725)	ISCU (ENSCPBG00000006718)	SART3 (ENSCPBG00000006699)	FICD (ENSCPBG00000006689)	CMKLR1 (ENSCPBG00000006683)	WSCD2 (ENSCPBG00000006668)	RPH3A (ENSCPBG00000006642)	PTPN11 (ENSCPBG00000006618)	RPL6 (ENSCPBG00000006608)	HECTD4 (ENSCPBG00000004292)	ENSCPBG00000003742	NAA25 (ENSCPBG00000003718) ##22	ERP29 (ENSCPBG00000003703)	TMEM116 (ENSCPBG00000003684)	ENSCPBG00000003663	ENSCPBG00000003639	MAPKAPK5 (ENSCPBG00000003614)	ALDH2 (ENSCPBG00000003596)	ACAD10 (ENSCPBG00000003529)	BRAP (ENSCPBG00000003491)	ATXN2 (ENSCPBG00000003465)	SH2B3 (ENSCPBG00000003455)	PHETA1 (ENSCPBG00000003447)	CUX2 (ENSCPBG00000003375)	MYL2 (ENSCPBG00000003337)	CCDC63 (ENSCPBG00000003326)	PPP1CC (ENSCPBG00000003304)
Testudinidae	ANCESTRAL SPECIES	32	ENSGT00940000156488	ENSGT00940000163343	ENSGT01030000235326	ENSGT00390000017134	ENSGT00390000015813	ENSGT00900000141107	ENSGT00390000008873	ENSGT01020000230438.C	ENSGT00940000159434	ENSGT00940000157468.a.b	ENSGT00940000157468.a.a.b	ENSGT00940000153876.B	ENSGT00390000003682	ENSGT00910000144226	ENSGT00530000063869.B	ENSGT00950000183174.A ##22	ENSGT00390000018566	ENSGT00390000003209	ENSGT00940000161067.y.a.d	ENSGT00940000161067.y.a.c	ENSGT00940000154089.b	ENSGT00940000156240	ENSGT00940000161620	ENSGT00500000044909	ENSGT00940000156812	ENSGT00950000183191.b	ENSGT00940000162791	ENSGT00940000160241	ENSGT00940000155578	ENSGT00940000153116.B	ENSGT00940000153472.a.a
Abingdon island giant tortoise	MODERN SPECIES	2151									WSCD2 (ENSCABG00000016690)	RPH3A (ENSCABG00000016688)	ENSCABG00000016687	PTPN11 (ENSCABG00000016686)	RPL6 (ENSCABG00000016685)	HECTD4 (ENSCABG00000016604)	TRAFD1 (ENSCABG00000016580)	NAA25 (ENSCABG00000016230) ##22	ERP29 (ENSCABG00000016217)	TMEM116 (ENSCABG00000016215)	ENSCABG00000016212	ENSCABG00000016210	MAPKAPK5 (ENSCABG00000016177)	ALDH2 (ENSCABG00000016174)	ACAD10 (ENSCABG00000015363)	BRAP (ENSCABG00000015311)	ATXN2 (ENSCABG00000013996)	SH2B3 (ENSCABG00000013959)	ENSCABG00000013957	CUX2 (ENSCABG00000013950)	MYL2 (ENSCABG00000013890)	CCDC63 (ENSCABG00000013887)	PPP1CC (ENSCABG00000013882)
Goode s thornscrub tortoise	MODERN SPECIES	4	CORO1C (ENSGEVG00005019908)	ZBED2 (ENSGEVG00005019912)	ENSGEVG00005019915	TMEM119 (ENSGEVG00005019918)	ISCU (ENSGEVG00005019926)	SART3 (ENSGEVG00005019931)	FICD (ENSGEVG00005019935)	CMKLR1 (ENSGEVG00005019937)	WSCD2 (ENSGEVG00005019941)	ENSGEVG00005019945	ENSGEVG00005019949	ENSGEVG00005019955	PTPN11 (ENSGEVG00005019962)	RPL6 (ENSGEVG00005019968)	TRAFD1 (ENSGEVG00005020023)	NAA25 (ENSGEVG00005020034) ##22	ERP29 (ENSGEVG00005020043)	TMEM116 (ENSGEVG00005020048)	ENSGEVG00005020058	MAPKAPK5 (ENSGEVG00005020066)	ALDH2 (ENSGEVG00005020074)	ACAD10 (ENSGEVG00005020079)	BRAP (ENSGEVG00005020085)	ATXN2 (ENSGEVG00005020244)	SH2B3 (ENSGEVG00005020519)	PHETA1 (ENSGEVG00005020525)	CUX2 (ENSGEVG00005020529)	MYL2 (ENSGEVG00005020537)	CCDC63 (ENSGEVG00005020540)	PPP1CC (ENSGEVG00005020543)	HVCN1 (ENSGEVG00005020548)
Chinese turtle	DUPLICATION
Chinese turtle	DUPLICATION
Chinese turtle	MODERN SPECIES	987									WSCD2 (ENSPSIG00000003605)	RPH3A (ENSPSIG00000003530)	ENSPSIG00000003520	RPL6 (ENSPSIG00000003500)	ENSPSIG00000001145	HECTD4 (ENSPSIG00000003486)	TRAFD1 (ENSPSIG00000003474)	ENSPSIG00000003470 ##22	ERP29 (ENSPSIG00000003464)	TMEM116 (ENSPSIG00000003458)
Chinese turtle	MODERN SPECIES	1859																ENSPSIG00000005836 ##22
Chinese turtle	MODERN SPECIES	925																ENSPSIG00000012632 ##22
Lepidosauria	ANCESTRAL SPECIES	13	ENSGT00940000156133	ENSGT00940000156488	ENSGT01030000235326	ENSGT00390000017134	ENSGT00390000015813	ENSGT00900000141107	ENSGT00390000008873	ENSGT01020000230438.C	ENSGT00940000159434	ENSGT00940000157468.a.b	ENSGT00940000157468.a.a.b	ENSGT00940000153876.B	ENSGT00390000003682	ENSGT00910000144226	ENSGT00530000063869.B	ENSGT00950000183174.A ##22	ENSGT00390000018566	ENSGT00390000003209	ENSGT00940000161067.y.b	ENSGT00940000154089.b	ENSGT00940000156240	ENSGT00940000161620	ENSGT00500000044909	ENSGT00940000156812	ENSGT00950000183191.b	ENSGT00940000162791	ENSGT00940000160241	ENSGT00940000155578	ENSGT00940000153116.B	ENSGT00940000153472.a.a	ENSGT00940000159403
Episquamata	ANCESTRAL SPECIES	10	ENSGT00940000156133	ENSGT00940000156488	ENSGT01030000235326	ENSGT00390000017134	ENSGT00390000015813	ENSGT00900000141107	ENSGT00390000008873	ENSGT01020000230438.C	ENSGT00940000159434	ENSGT00940000157468.a.b	ENSGT00940000157468.a.a.b	ENSGT00940000153876.B	ENSGT00390000003682	ENSGT00910000144226	ENSGT00530000063869.B	ENSGT00950000183174.A ##22	ENSGT00390000018566	ENSGT00390000003209	ENSGT00940000161067.y.b	ENSGT00940000154089.b	ENSGT00940000156240	ENSGT00940000161620	ENSGT00500000044909	ENSGT00940000156812	ENSGT00950000183191.b	ENSGT00940000162791	ENSGT00940000160241	ENSGT00940000155578	ENSGT00940000153116.B	ENSGT00940000153472.a.a	ENSGT00940000159403
Laterata	ANCESTRAL SPECIES	12	ENSGT00940000156133	ENSGT00940000156488	ENSGT01030000235326	ENSGT00390000017134	ENSGT00390000015813	ENSGT00900000141107	ENSGT00390000008873	ENSGT01020000230438.C	ENSGT00940000159434	ENSGT00940000157468.a.b	ENSGT00940000157468.a.a.b	ENSGT00940000153876.B	ENSGT00390000003682	ENSGT00910000144226	ENSGT00530000063869.B	ENSGT00950000183174.A ##22	ENSGT00390000018566	ENSGT00390000003209	ENSGT00940000161067.y.b	ENSGT00940000161067.y.a	ENSGT00940000154089.b	ENSGT00940000156240	ENSGT00940000161620	ENSGT00500000044909	ENSGT00940000156812	ENSGT00950000183191.b	ENSGT00940000162791	ENSGT00940000160241	ENSGT00940000155578	ENSGT00940000153116.B	ENSGT00940000153472.a.a
Common wall lizard	MODERN SPECIES	16	NECAP2 (ENSPMRG00000011748)	CROCC (ENSPMRG00000011437)	SDHB (ENSPMRG00000011352)	ATP13A2 (ENSPMRG00000011327)	FICD (ENSPMRG00000011309)	CMKLR1 (ENSPMRG00000011304)	ENSPMRG00000011297	ENSPMRG00000011287	RPH3A (ENSPMRG00000011239)	ENSPMRG00000011210	ENSPMRG00000011208	PTPN11 (ENSPMRG00000011190)	RPL6 (ENSPMRG00000011176)	HECTD4 (ENSPMRG00000010340)	TRAFD1 (ENSPMRG00000010130)	NAA25 (ENSPMRG00000010053) ##22	ERP29 (ENSPMRG00000010008)	ENSPMRG00000010002	TMEM116 (ENSPMRG00000009994)	ENSPMRG00000009981	ENSPMRG00000009980	ENSPMRG00000009974	MAPKAPK5 (ENSPMRG00000009962)	ALDH2 (ENSPMRG00000009948)	ENSPMRG00000009939	ENSPMRG00000008437	BRAP (ENSPMRG00000007966)	ATXN2 (ENSPMRG00000007951)	SH2B3 (ENSPMRG00000007942)	PHETA1 (ENSPMRG00000007937)	CUX2 (ENSPMRG00000007910)
Argentine black and white tegu	MODERN SPECIES	41	SSH1 (ENSSMRG00000009325)	CORO1C (ENSSMRG00000009321)	ENSSMRG00000009320	TMEM119 (ENSSMRG00000009319)	ISCU (ENSSMRG00000009318)	SART3 (ENSSMRG00000009317)	FICD (ENSSMRG00000009316)	CMKLR1 (ENSSMRG00000009304)	WSCD2 (ENSSMRG00000009300)	RPH3A (ENSSMRG00000009297)	ENSSMRG00000009296	PTPN11 (ENSSMRG00000009292)	RPL6 (ENSSMRG00000009291)	HECTD4 (ENSSMRG00000009290)	TRAFD1 (ENSSMRG00000009289)	NAA25 (ENSSMRG00000009287) ##22	ERP29 (ENSSMRG00000009286)	TMEM116 (ENSSMRG00000009285)	ENSSMRG00000009284	ENSSMRG00000009283	MAPKAPK5 (ENSSMRG00000009280)	ALDH2 (ENSSMRG00000009255)	ACAD10 (ENSSMRG00000009254)	BRAP (ENSSMRG00000009252)	ATXN2 (ENSSMRG00000009156)	SH2B3 (ENSSMRG00000009154)	PHETA1 (ENSSMRG00000009151)	CUX2 (ENSSMRG00000009148)	MYL2 (ENSSMRG00000009130)	CCDC63 (ENSSMRG00000009129)	PPP1CC (ENSSMRG00000009126)
Toxicofera	ANCESTRAL SPECIES	11	ENSGT00940000156133	ENSGT00940000156488	ENSGT01030000235326	ENSGT00390000017134	ENSGT00390000015813	ENSGT00900000141107	ENSGT00390000008873	ENSGT01020000230438.C	ENSGT00940000159434	ENSGT00940000157468.a.b	ENSGT00940000157468.a.a.b	ENSGT00940000153876.B	ENSGT00390000003682	ENSGT00910000144226	ENSGT00530000063869.B	ENSGT00950000183174.A ##22	ENSGT00390000018566	ENSGT00390000003209	ENSGT00940000161067.y.b	ENSGT00940000154089.b	ENSGT00940000156240	ENSGT00940000161620	ENSGT00500000044909	ENSGT00940000156812	ENSGT00950000183191.b	ENSGT00940000162791	ENSGT00940000160241	ENSGT00940000155578	ENSGT00940000153116.B	ENSGT00940000153472.a.a	ENSGT00940000159403
Elapidae	ANCESTRAL SPECIES	23	ENSGT00940000156133	ENSGT00940000156488	ENSGT01030000235326	ENSGT00390000017134	ENSGT00390000015813	ENSGT00900000141107	ENSGT00390000008873	ENSGT01020000230438.C	ENSGT00940000159434	ENSGT00940000157468.a.b	ENSGT00940000157468.a.a.b	ENSGT00940000153876.B	ENSGT00390000003682	ENSGT00910000144226	ENSGT00530000063869.B	ENSGT00950000183174.A ##22	ENSGT00390000018566	ENSGT00390000003209	ENSGT00940000161067.y.b	ENSGT00940000154089.b	ENSGT00940000156240	ENSGT00940000161620	ENSGT00500000044909	ENSGT00940000156812	ENSGT00950000183191.b	ENSGT00940000162791	ENSGT00940000160241	ENSGT00940000155578	ENSGT00940000153116.B	ENSGT00940000153472.a.a	ENSGT00940000159403
Elapidae_a	ANCESTRAL SPECIES	48	ENSGT00390000018635.d	ENSGT00940000156133	ENSGT00940000156488	ENSGT01030000235326	ENSGT00390000017134	ENSGT00390000015813	ENSGT00900000141107	ENSGT00390000008873	ENSGT01020000230438.C	ENSGT00940000159434	ENSGT00940000157468.a.b	ENSGT00940000153876.B	ENSGT00390000003682	ENSGT00910000144226	ENSGT00530000063869.B	ENSGT00950000183174.A ##22	ENSGT00390000018566	ENSGT00390000003209	ENSGT00940000161067.y.b	ENSGT00940000154089.b	ENSGT00940000156240	ENSGT00940000161620	ENSGT00500000044909	ENSGT00940000156812	ENSGT00950000183191.b	ENSGT00940000162791	ENSGT00940000160241	ENSGT00940000155578	ENSGT00940000153116.B	ENSGT00940000153472.a.a	ENSGT00940000159403
Acanthophiinae	ANCESTRAL SPECIES	46	ENSGT00390000018635.d	ENSGT00940000156133	ENSGT00940000156488	ENSGT01030000235326	ENSGT00390000017134	ENSGT00390000015813	ENSGT00900000141107	ENSGT00390000008873	ENSGT01020000230438.C	ENSGT00940000159434	ENSGT00940000157468.a.a.b	ENSGT00940000153876.B	ENSGT00390000003682	ENSGT00910000144226	ENSGT00530000063869.B	ENSGT00950000183174.A ##22	ENSGT00390000018566	ENSGT00390000003209	ENSGT00940000161067.y.b	ENSGT00940000154089.b	ENSGT00940000156240	ENSGT00940000161620	ENSGT00500000044909	ENSGT00940000156812	ENSGT00950000183191.b	ENSGT00940000162791	ENSGT00940000160241	ENSGT00940000155578	ENSGT00940000153116.B	ENSGT00940000153472.a.a	ENSGT00940000159403
Eastern brown snake	MODERN SPECIES	123	DAO (ENSPTXG00000017768)	SSH1 (ENSPTXG00000017767)	CORO1C (ENSPTXG00000017766)	ENSPTXG00000017765	TMEM119 (ENSPTXG00000017764)	ISCU (ENSPTXG00000017763)	SART3 (ENSPTXG00000017762)	FICD (ENSPTXG00000017760)	CMKLR1 (ENSPTXG00000017759)	WSCD2 (ENSPTXG00000017758)	ENSPTXG00000017757	PTPN11 (ENSPTXG00000017755)	RPL6 (ENSPTXG00000017753)	HECTD4 (ENSPTXG00000017746)	TRAFD1 (ENSPTXG00000017743)	NAA25 (ENSPTXG00000017735) ##22	ERP29 (ENSPTXG00000017732)	TMEM116 (ENSPTXG00000017730)	ENSPTXG00000017728	MAPKAPK5 (ENSPTXG00000017713)	ALDH2 (ENSPTXG00000017710)	ACAD10 (ENSPTXG00000016163)	BRAP (ENSPTXG00000016132)	ATXN2 (ENSPTXG00000015345)	SH2B3 (ENSPTXG00000015335)	PHETA1 (ENSPTXG00000015334)	CUX2 (ENSPTXG00000015329)	MYL2 (ENSPTXG00000015326)	ENSPTXG00000015322	PPP1CC (ENSPTXG00000015319)	HVCN1 (ENSPTXG00000015318)
Mainland tiger snake	MODERN SPECIES	515											PTPN11 (ENSNSUG00000011649)	RPL6 (ENSNSUG00000011650)	ENSNSUG00000011652	ENSNSUG00000011657	TRAFD1 (ENSNSUG00000011659)	NAA25 (ENSNSUG00000011660) ##22	ERP29 (ENSNSUG00000012114)	TMEM116 (ENSNSUG00000012115)	ENSNSUG00000012116	MAPKAPK5 (ENSNSUG00000012117)	ALDH2 (ENSNSUG00000012234)	ACAD10 (ENSNSUG00000012238)	BRAP (ENSNSUG00000012625)	ATXN2 (ENSNSUG00000012626)
Blue-lipped sea krait	MODERN SPECIES	199	DAO (ENSLLTG00000001037)	SSH1 (ENSLLTG00000000983)	CORO1C (ENSLLTG00000000957)	ENSLLTG00000000953	TMEM119 (ENSLLTG00000000945)	ISCU (ENSLLTG00000000938)	SART3 (ENSLLTG00000000908)	FICD (ENSLLTG00000000895)	CMKLR1 (ENSLLTG00000000888)	WSCD2 (ENSLLTG00000000872)	RPH3A (ENSLLTG00000000855)	PTPN11 (ENSLLTG00000000828)	RPL6 (ENSLLTG00000000809)	HECTD4 (ENSLLTG00000000746)	TRAFD1 (ENSLLTG00000000695)	NAA25 (ENSLLTG00000000641) ##22	ERP29 (ENSLLTG00000000633)	TMEM116 (ENSLLTG00000000609)	ENSLLTG00000000603	MAPKAPK5 (ENSLLTG00000000585)	ALDH2 (ENSLLTG00000000567)	ACAD10 (ENSLLTG00000000512)	BRAP (ENSLLTG00000000478)
Indian cobra	MODERN SPECIES	16	SSH1 (ENSNNAG00000017377)	CORO1C (ENSNNAG00000017394)	ENSNNAG00000017401	TMEM119 (ENSNNAG00000017405)	ISCU (ENSNNAG00000017410)	SART3 (ENSNNAG00000017417)	FICD (ENSNNAG00000017428)	CMKLR1 (ENSNNAG00000017435)	WSCD2 (ENSNNAG00000017440)	RPH3A (ENSNNAG00000017450)	ENSNNAG00000017463	PTPN11 (ENSNNAG00000017476)	RPL6 (ENSNNAG00000017498)	HECTD4 (ENSNNAG00000017528)	ENSNNAG00000017730	NAA25 (ENSNNAG00000017748) ##22	ERP29 (ENSNNAG00000017767)	TMEM116 (ENSNNAG00000017772)	MAPKAPK5 (ENSNNAG00000017788)	ENSNNAG00000017863	ALDH2 (ENSNNAG00000017895)	ACAD10 (ENSNNAG00000018235)	BRAP (ENSNNAG00000018341)	ENSNNAG00000018347	ATXN2 (ENSNNAG00000018355)	SH2B3 (ENSNNAG00000018359)	PHETA1 (ENSNNAG00000018368)	CUX2 (ENSNNAG00000018375)	MYL2 (ENSNNAG00000018381)	CCDC63 (ENSNNAG00000018382)	PPP1CC (ENSNNAG00000018386)
Lizard	MODERN SPECIES	896	ENSACAG00000028714	ENSACAG00000040415	ENSACAG00000045156	ENSACAG00000036770	ENSACAG00000026467	ENSACAG00000044591	ENSACAG00000036623	ENSACAG00000002803	ENSACAG00000002825	ENSACAG00000002830	RPH3A (ENSACAG00000002887)	PTPN11 (ENSACAG00000002944)	RPL6 (ENSACAG00000003060)	HECTD4 (ENSACAG00000009550)	TRAFD1 (ENSACAG00000009549)	NAA25 (ENSACAG00000009408) ##22	ENSACAG00000009392	TMEM116 (ENSACAG00000009378)	ENSACAG00000009370	MAPKAPK5 (ENSACAG00000009296)	ALDH2 (ENSACAG00000009091)	ACAD10 (ENSACAG00000008980)
tuatara	MODERN SPECIES	327	ENSSPUG00000009487	ENSSPUG00000009500	CORO1C (ENSSPUG00000009504)	ENSSPUG00000009516	ISCU (ENSSPUG00000009521)	SART3 (ENSSPUG00000009541)	FICD (ENSSPUG00000009566)	CMKLR1 (ENSSPUG00000009580)	WSCD2 (ENSSPUG00000009591)	ENSSPUG00000009613	ENSSPUG00000009624	PTPN11 (ENSSPUG00000009646)	RPL6 (ENSSPUG00000009672)	HECTD4 (ENSSPUG00000009722)	TRAFD1 (ENSSPUG00000010003)	NAA25 (ENSSPUG00000010075) ##22	ERP29 (ENSSPUG00000010133)	TMEM116 (ENSSPUG00000010156)	MAPKAPK5 (ENSSPUG00000010195)	ALDH2 (ENSSPUG00000010252)	ACAD10 (ENSSPUG00000010265)	BRAP (ENSSPUG00000010293)	ATXN2 (ENSSPUG00000010317)	SH2B3 (ENSSPUG00000010443)	PHETA1 (ENSSPUG00000010468)	CUX2 (ENSSPUG00000010497)	MYL2 (ENSSPUG00000010584)	CCDC63 (ENSSPUG00000010647)	PPP1CC (ENSSPUG00000010764)	HVCN1 (ENSSPUG00000010784)	ENSSPUG00000010825
Mammalia	ANCESTRAL SPECIES	35	ENSGT00730000111291	ENSGT00940000163638	ENSGT00390000011578	ENSGT00940000157987	ENSGT01050000244888.b.b.a.b	ENSGT00940000153998.b	ENSGT00940000161655	ENSGT00940000154284.b	ENSGT00940000156855	ENSGT00940000161662	ENSGT00940000157468.a.b	ENSGT00940000153876.B	ENSGT00390000003682	ENSGT00910000144226	ENSGT00530000063869.B	ENSGT00950000183174.A ##22	ENSGT00390000018566	ENSGT00390000003209	ENSGT00940000161891	ENSGT00940000154089.b	ENSGT00940000156240	ENSGT00940000161620	ENSGT00500000044909	ENSGT00940000156812	ENSGT00950000183191.b	ENSGT00940000162791	ENSGT00940000160241	ENSGT00940000155578	ENSGT00940000153116.B	ENSGT00940000153472.a.a	ENSGT00940000159403
Platypus	MODERN SPECIES	11	ENSOANG00000011553	SLC35E4 (ENSOANG00000045175)	ENSOANG00000040034	OSBP2 (ENSOANG00000012851)	ENSOANG00000045557	MORC2 (ENSOANG00000014250)	SMTN (ENSOANG00000031230)	SELENOM (ENSOANG00000000231)	INPP5J (ENSOANG00000000230)	ENSOANG00000000229	ENSOANG00000000228	PTPN11 (ENSOANG00000006031)	RPL6 (ENSOANG00000004808)	HECTD4 (ENSOANG00000004806)	ENSOANG00000004805	NAA25 (ENSOANG00000004803) ##22	ERP29 (ENSOANG00000004802)	ENSOANG00000043450	ENSOANG00000009507	MAPKAPK5 (ENSOANG00000009506)	ALDH2 (ENSOANG00000004801)	ENSOANG00000004798	BRAP (ENSOANG00000001982)	ATXN2 (ENSOANG00000004796)	SH2B3 (ENSOANG00000004795)	PHETA1 (ENSOANG00000015870)	CUX2 (ENSOANG00000004793)	MYL2 (ENSOANG00000004792)	CCDC63 (ENSOANG00000004791)	PPP1CC (ENSOANG00000004790)	HVCN1 (ENSOANG00000004789)
Theria	ANCESTRAL SPECIES	20	ENSGT00940000158958	ENSGT00730000111354	ENSGT00390000013005	ENSGT00550000075100	ENSGT00940000153110.D	ENSGT00940000158715	ENSGT00940000160943	ENSGT00510000046406.f.b.a.a.d	ENSGT00510000046406.f.b.a.a.c	ENSGT00510000046406.f.b.a.b	ENSGT00940000157468.a.b	ENSGT00940000153876.B	ENSGT00390000003682	ENSGT00910000144226	ENSGT00530000063869.B	ENSGT00950000183174.A ##22	ENSGT00390000018566	ENSGT00390000003209	ENSGT00940000161891	ENSGT00940000154089.b	ENSGT00940000156240	ENSGT00940000161620	ENSGT00500000044909	ENSGT00940000156812	ENSGT00950000183191.b	ENSGT00940000162791	ENSGT00940000160241	ENSGT00940000155578	ENSGT00940000153116.B	ENSGT00940000153472.a.a	ENSGT00940000159403
Marsupialia	ANCESTRAL SPECIES	16	ENSGT00940000158958	ENSGT00730000111354	ENSGT00390000013005	ENSGT00550000075100	ENSGT00940000153110.D	ENSGT00940000158715	ENSGT00940000160943	ENSGT00510000046406.f.b.a.a.d	ENSGT00510000046406.f.b.a.a.c	ENSGT00510000046406.f.b.a.b	ENSGT00940000157468.a.b	ENSGT00940000153876.B	ENSGT00390000003682	ENSGT00910000144226	ENSGT00530000063869.B	ENSGT00950000183174.A ##22	ENSGT00390000018566	ENSGT00390000003209	ENSGT00940000161891.ab	ENSGT00940000161891.`b.a	ENSGT00940000154089.b	ENSGT00940000156240	ENSGT00940000161620	ENSGT00500000044909.i	ENSGT00940000156812	ENSGT00950000183191.b	ENSGT00940000162791	ENSGT00940000160241	ENSGT00940000155578	ENSGT00940000153116.B	ENSGT00940000153472.a.a
Marsupialia_b	ANCESTRAL SPECIES	17	ENSGT00730000111354	ENSGT00390000013005	ENSGT00550000075100	ENSGT00940000153110.D	ENSGT00940000158715	ENSGT00940000160943	ENSGT00510000046406.f.b.a.a.d	ENSGT00510000046406.f.b.a.a.c.a	ENSGT00510000046406.f.b.a.b	ENSGT00940000157468.a.b	ENSGT00940000153876.B	ENSGT00390000003682	ENSGT00550000074846.f	ENSGT00910000144226	ENSGT00530000063869.B	ENSGT00950000183174.A ##22	ENSGT00390000018566	ENSGT00390000003209	ENSGT00940000161891.ab	ENSGT00940000161891.`b.b	ENSGT00940000161891.`b.a	ENSGT00940000154089.b	ENSGT00940000156240	ENSGT00940000161620	ENSGT00500000044909.i	ENSGT00940000156812	ENSGT00950000183191.b	ENSGT00940000162791	ENSGT00940000160241	ENSGT00940000155578	ENSGT00940000153116.B
Diprotodontia	ANCESTRAL SPECIES	22	ENSGT00730000111354	ENSGT00390000013005	ENSGT00550000075100	ENSGT00940000153110.D	ENSGT00940000158715	ENSGT00940000160943	ENSGT00510000046406.f.b.a.a.d	ENSGT00510000046406.f.b.a.a.c.a	ENSGT00510000046406.f.b.a.b	ENSGT00940000157468.a.b	ENSGT00940000153876.B	ENSGT00390000003682	ENSGT00550000074846.f	ENSGT00910000144226	ENSGT00530000063869.B	ENSGT00950000183174.A ##22	ENSGT00390000018566	ENSGT00390000003209	ENSGT00940000161891.ab
Diprotodontia_a	ANCESTRAL SPECIES	22	ENSGT00730000111354	ENSGT00390000013005	ENSGT00550000075100	ENSGT00940000153110.D	ENSGT00940000158715	ENSGT00940000160943	ENSGT00510000046406.f.b.a.a.d	ENSGT00510000046406.f.b.a.a.c.a	ENSGT00510000046406.f.b.a.b	ENSGT00940000157468.a.b	ENSGT00940000153876.B	ENSGT00390000003682	ENSGT00550000074846.f	ENSGT00910000144226	ENSGT00530000063869.B	ENSGT00950000183174.A ##22	ENSGT00390000018566	ENSGT00390000003209	ENSGT00940000161891.ab
koala	MODERN SPECIES	405											PTPN11 (ENSPCIG00000018866)	RPL6 (ENSPCIG00000018873)	ENSPCIG00000018225	HECTD4 (ENSPCIG00000018244)	ENSPCIG00000018654	NAA25 (ENSPCIG00000018078) ##22	ERP29 (ENSPCIG00000035014)
Common wonbat	MODERN SPECIES	52	RITA1 (ENSVURG00010004656)	DDX54 (ENSVURG00010004607)	ENSVURG00010004581	RASAL1 (ENSVURG00010004535)	DTX1 (ENSVURG00010004519)	OAS2 (ENSVURG00010004508)	ENSVURG00010003984	OAS1 (ENSVURG00010003933)	ENSVURG00010003923	RPH3A (ENSVURG00010003902)	PTPN11 (ENSVURG00010003855)	ENSVURG00010003826	ENSVURG00010003822	HECTD4 (ENSVURG00010003735)	TRAFD1 (ENSVURG00010003703)	NAA25 (ENSVURG00010003682) ##22	ERP29 (ENSVURG00010003673)	TMEM116 (ENSVURG00010003659)	ENSVURG00010003650
Wallaby	MODERN SPECIES	1999																NAA25 (ENSMEUG00000007155) ##22
Tasmanian devil	MODERN SPECIES		DDX54 (ENSSHAG00000015646)	ENSSHAG00000015698	RASAL1 (ENSSHAG00000015786)	DTX1 (ENSSHAG00000015903)	ENSSHAG00000016214	OAS3 (ENSSHAG00000016172)	ENSSHAG00000017661	ENSSHAG00000030945	ENSSHAG00000025571	RPH3A (ENSSHAG00000016431)	PTPN11 (ENSSHAG00000006173)	ENSSHAG00000025689	ENSSHAG00000008241	HECTD4 (ENSSHAG00000008265)	TRAFD1 (ENSSHAG00000009160)	NAA25 (ENSSHAG00000009351) ##22	ENSSHAG00000009695	ENSSHAG00000031143	TMEM116 (ENSSHAG00000009829)	ENSSHAG00000010243	ENSSHAG00000024708	ENSSHAG00000010294	MAPKAPK5 (ENSSHAG00000002584)	ALDH2 (ENSSHAG00000004540)	ACAD10 (ENSSHAG00000005556)	BRAP (ENSSHAG00000006155)	ENSSHAG00000008060	ATXN2 (ENSSHAG00000007304)	PHETA1 (ENSSHAG00000029102)	CUX2 (ENSSHAG00000009458)	MYL2 (ENSSHAG00000012618)
Opossum	MODERN SPECIES	2	DTX1 (ENSMODG00000003357)	ENSMODG00000023765	ENSMODG00000048975	OAS3 (ENSMODG00000003328)	ENSMODG00000042950	ENSMODG00000037008	ENSMODG00000039204	ENSMODG00000003289	ENSMODG00000003252	RPH3A (ENSMODG00000003188)	PTPN11 (ENSMODG00000003120)	ENSMODG00000028045	RPL6 (ENSMODG00000003096)	HECTD4 (ENSMODG00000003022)	TRAFD1 (ENSMODG00000002929)	NAA25 (ENSMODG00000002917) ##22	ERP29 (ENSMODG00000002868)	ENSMODG00000002849	ENSMODG00000010377	CRYBB3 (ENSMODG00000010388)	CRYBB2 (ENSMODG00000010462)	GRK3 (ENSMODG00000010516)	MYO18B (ENSMODG00000010527)	SEZ6L (ENSMODG00000010571)	ENSMODG00000040850	ASPHD2 (ENSMODG00000010662)	HPS4 (ENSMODG00000010688)	SRRD (ENSMODG00000043414)	TFIP11 (ENSMODG00000010710)	TPST2 (ENSMODG00000010716)	ENSMODG00000047443
Eutheria	ANCESTRAL SPECIES	18	ENSGT00940000158958	ENSGT00730000111354	ENSGT00390000013005	ENSGT00550000075100	ENSGT00940000153110.D	ENSGT00940000158715	ENSGT00940000160943	ENSGT00510000046406.f.b.a.a.d	ENSGT00510000046406.f.b.a.a.c	ENSGT00510000046406.f.b.a.b	ENSGT00940000157468.a.b	ENSGT00940000153876.B	ENSGT00390000003682	ENSGT00910000144226	ENSGT00530000063869.B	ENSGT00950000183174.A ##22	ENSGT00390000018566	ENSGT00390000003209	ENSGT00940000161891	ENSGT00940000154089.b	ENSGT00940000156240	ENSGT00940000161620	ENSGT00500000044909	ENSGT00940000156812	ENSGT00950000183191.b	ENSGT00940000162791	ENSGT00940000160241	ENSGT00940000155578	ENSGT00940000153116.B	ENSGT00940000153472.a.a	ENSGT00940000159403
Atlantogenata	ANCESTRAL SPECIES	28	ENSGT00940000158958	ENSGT00730000111354	ENSGT00390000013005	ENSGT00550000075100	ENSGT00940000153110.D	ENSGT00940000158715	ENSGT00940000160943	ENSGT00510000046406.f.b.a.a.d	ENSGT00510000046406.f.b.a.a.c	ENSGT00510000046406.f.b.a.b	ENSGT00940000157468.a.b	ENSGT00940000153876.B	ENSGT00390000003682	ENSGT00910000144226	ENSGT00530000063869.B	ENSGT00950000183174.A ##22	ENSGT00390000018566	ENSGT00390000003209	ENSGT00940000161891	ENSGT00940000154089.b	ENSGT00940000156240	ENSGT00940000161620	ENSGT00500000044909	ENSGT00940000156812	ENSGT00950000183191.b	ENSGT00940000162791	ENSGT00940000160241	ENSGT00940000155578	ENSGT00940000153116.B	ENSGT00940000153472.a.a	ENSGT00940000159403
Xenarthra	ANCESTRAL SPECIES	591										ENSGT00510000046406.f.b.a.b	ENSGT00940000157468.a.b	ENSGT00940000153876.B	ENSGT00390000003682	ENSGT00910000144226	ENSGT00530000063869.B	ENSGT00950000183174.A ##22	ENSGT00390000018566
Armadillo	MODERN SPECIES	484								ENSDNOG00000043027	OAS1 (ENSDNOG00000036996)	RPH3A (ENSDNOG00000000993)	PTPN11 (ENSDNOG00000036677)	ENSDNOG00000033451	HECTD4 (ENSDNOG00000006446)	ENSDNOG00000002265	ENSDNOG00000045371	NAA25 (ENSDNOG00000041993) ##22	ERP29 (ENSDNOG00000004963)	ENSDNOG00000038730
Sloth	MODERN SPECIES	1087																NAA25 (ENSCHOG00000006875) ##22
Afrotheria	ANCESTRAL SPECIES	62												ENSGT00940000153876.B	ENSGT00390000003682	ENSGT00910000144226	ENSGT00530000063869.B	ENSGT00950000183174.A ##22	ENSGT00390000018566	ENSGT00390000003209	ENSGT00940000161891	ENSGT00940000154089.b	ENSGT00940000156240	ENSGT00940000161620	ENSGT00500000044909	ENSGT00940000156812	ENSGT00950000183191.b	ENSGT00940000162791	ENSGT00940000160241	ENSGT00940000155578	ENSGT00940000153116.B	ENSGT00940000153472.a.a	ENSGT00940000159403
Afrotheria_a	ANCESTRAL SPECIES	59												ENSGT00940000153876.B	ENSGT00390000003682	ENSGT00910000144226	ENSGT00530000063869.B	ENSGT00950000183174.A ##22	ENSGT00390000018566	ENSGT00390000003209	ENSGT00940000161891	ENSGT00940000154089.b	ENSGT00940000156240	ENSGT00940000161620	ENSGT00500000044909	ENSGT00940000156812	ENSGT00950000183191.b	ENSGT00940000162791	ENSGT00940000160241	ENSGT00940000155578	ENSGT00940000153116.B	ENSGT00940000153472.a.a	ENSGT00940000159403
Elephant	MODERN SPECIES	580												PTPN11 (ENSLAFG00000002202)	RPL6 (ENSLAFG00000002201)	HECTD4 (ENSLAFG00000008109)	TRAFD1 (ENSLAFG00000013890)	NAA25 (ENSLAFG00000013882) ##22	ERP29 (ENSLAFG00000028569)	TMEM116 (ENSLAFG00000013877)	ENSLAFG00000026413	ENSLAFG00000028018	ENSLAFG00000030183	ENSLAFG00000028820	MAPKAPK5 (ENSLAFG00000017919)	ALDH2 (ENSLAFG00000013136)	ACAD10 (ENSLAFG00000014980)	BRAP (ENSLAFG00000006701)	ATXN2 (ENSLAFG00000007416)	SH2B3 (ENSLAFG00000007409)	PHETA1 (ENSLAFG00000028165)	CUX2 (ENSLAFG00000001145)	ENSLAFG00000031233
Hyrax	MODERN SPECIES	6950																NAA25 (ENSPCAG00000014428) ##22	ERP29 (ENSPCAG00000014392)	TMEM116 (ENSPCAG00000014330)
Tenrec	MODERN SPECIES	8972																NAA25 (ENSETEG00000015263) ##22	ERP29 (ENSETEG00000015261)	TMEM116 (ENSETEG00000015259)	MAPKAPK5 (ENSETEG00000015255)
Boreoeutheria	ANCESTRAL SPECIES	20	ENSGT00940000158958	ENSGT00730000111354	ENSGT00390000013005	ENSGT00550000075100	ENSGT00940000153110.D	ENSGT00940000158715	ENSGT00940000160943	ENSGT00510000046406.f.b.a.a.d	ENSGT00510000046406.f.b.a.a.c	ENSGT00510000046406.f.b.a.b	ENSGT00940000157468.a.b	ENSGT00940000153876.B	ENSGT00390000003682	ENSGT00910000144226	ENSGT00530000063869.B	ENSGT00950000183174.A ##22	ENSGT00390000018566	ENSGT00390000003209	ENSGT00940000161891	ENSGT00940000154089.b	ENSGT00940000156240	ENSGT00940000161620	ENSGT00940000164635	ENSGT00500000044909	ENSGT00940000156812	ENSGT00950000183191.b	ENSGT00940000162791	ENSGT00940000160241	ENSGT00940000155578	ENSGT00940000153116.B	ENSGT00940000153472.a.a
Euarchontoglires	ANCESTRAL SPECIES	20	ENSGT00940000158958	ENSGT00730000111354	ENSGT00390000013005	ENSGT00550000075100	ENSGT00940000153110.D	ENSGT00940000158715	ENSGT00940000160943	ENSGT00510000046406.f.b.a.a.d	ENSGT00510000046406.f.b.a.a.c	ENSGT00510000046406.f.b.a.b	ENSGT00940000157468.a.b	ENSGT00940000153876.B	ENSGT00390000003682	ENSGT00910000144226	ENSGT00530000063869.B	ENSGT00950000183174.A ##22	ENSGT00390000018566	ENSGT00390000003209	ENSGT00940000161891	ENSGT00940000154089.b	ENSGT00940000156240	ENSGT00940000161620	ENSGT00940000164635	ENSGT00500000044909	ENSGT00940000156812	ENSGT00950000183191.b	ENSGT00940000162791	ENSGT00940000160241	ENSGT00940000155578	ENSGT00940000153116.B	ENSGT00940000153472.a.a
Euarchontoglires_A	ANCESTRAL SPECIES	18	ENSGT00940000158958	ENSGT00730000111354	ENSGT00390000013005	ENSGT00550000075100	ENSGT00940000153110.D	ENSGT00940000158715	ENSGT00940000160943	ENSGT00510000046406.f.b.a.a.d	ENSGT00510000046406.f.b.a.a.c	ENSGT00510000046406.f.b.a.b	ENSGT00940000157468.a.b	ENSGT00940000153876.B	ENSGT00390000003682	ENSGT00910000144226	ENSGT00530000063869.B	ENSGT00950000183174.A ##22	ENSGT00390000018566	ENSGT00390000003209	ENSGT00940000161891	ENSGT00940000154089.b	ENSGT00940000156240	ENSGT00940000161620	ENSGT00500000044909	ENSGT00940000156812	ENSGT00950000183191.b	ENSGT00940000162791	ENSGT00940000160241	ENSGT00940000155578	ENSGT00940000153116.B	ENSGT00940000153472.a.a	ENSGT00940000159403
Tree shrew	MODERN SPECIES	5032											PTPN11 (ENSTBEG00000001420)	RPL6 (ENSTBEG00000008626)	ENSTBEG00000007808	ENSTBEG00000006148	ENSTBEG00000005703	NAA25 (ENSTBEG00000003826) ##22	TMEM116 (ENSTBEG00000003143)
Glires	ANCESTRAL SPECIES	19	ENSGT00940000158958	ENSGT00730000111354	ENSGT00390000013005	ENSGT00550000075100	ENSGT00940000153110.D	ENSGT00940000158715	ENSGT00940000160943	ENSGT00510000046406.f.b.a.a.d	ENSGT00510000046406.f.b.a.a.c	ENSGT00510000046406.f.b.a.b	ENSGT00940000157468.a.b	ENSGT00940000153876.B	ENSGT00390000003682	ENSGT00910000144226	ENSGT00530000063869.B	ENSGT00950000183174.A ##22	ENSGT00390000018566	ENSGT00390000003209	ENSGT00940000161891	ENSGT00940000154089.b	ENSGT00940000156240	ENSGT00940000161620	ENSGT00500000044909	ENSGT00940000156812	ENSGT00950000183191.b	ENSGT00940000162791	ENSGT00940000160241	ENSGT00940000155578	ENSGT00940000153116.B	ENSGT00940000153472.a.a	ENSGT00940000159403
Lagomorpha	ANCESTRAL SPECIES	65	ENSGT00940000158958	ENSGT00730000111354	ENSGT00390000013005	ENSGT00550000075100	ENSGT01040000240683	ENSGT00940000158715	ENSGT00940000160943	ENSGT00510000046406.f.b.a.a.d	ENSGT00510000046406.f.b.a.a.c	ENSGT00510000046406.f.b.a.b	ENSGT00940000157468.a.b	ENSGT00940000153876.B	ENSGT00390000003682	ENSGT00910000144226	ENSGT00530000063869.B	ENSGT00950000183174.A ##22	ENSGT00390000018566	ENSGT00390000003209	ENSGT00940000164542	ENSGT00940000161891	ENSGT00940000154089.b	ENSGT00940000156240	ENSGT00940000161620	ENSGT00500000044909	ENSGT00940000156812	ENSGT00950000183191.b	ENSGT00940000160241	ENSGT00940000155578	ENSGT00940000153116.B	ENSGT00940000153472.a.a	ENSGT00940000159403
Rabbit	MODERN SPECIES	13	PLBD2 (ENSOCUG00000007851)	SLC8B1 (ENSOCUG00000003827)	TPCN1 (ENSOCUG00000023629)	IQCD (ENSOCUG00000016029)	RITA1 (ENSOCUG00000022772)	RASAL1 (ENSOCUG00000016015)	OAS2 (ENSOCUG00000015823)	OAS3 (ENSOCUG00000027849)	OAS1 (ENSOCUG00000034782)	RPH3A (ENSOCUG00000020936)	ENSOCUG00000038629	PTPN11 (ENSOCUG00000004533)	ENSOCUG00000003802	HECTD4 (ENSOCUG00000021959)	TRAFD1 (ENSOCUG00000007589)	NAA25 (ENSOCUG00000007226) ##22	ERP29 (ENSOCUG00000007221)	TMEM116 (ENSOCUG00000007214)	ENSOCUG00000034076	ADAM1A (ENSOCUG00000020987)	MAPKAPK5 (ENSOCUG00000011427)	ALDH2 (ENSOCUG00000008325)	ACAD10 (ENSOCUG00000011359)	BRAP (ENSOCUG00000031536)	ATXN2 (ENSOCUG00000002855)	SH2B3 (ENSOCUG00000002851)	CUX2 (ENSOCUG00000021923)	MYL2 (ENSOCUG00000025586)	CCDC63 (ENSOCUG00000022705)	PPP1CC (ENSOCUG00000009275)	HVCN1 (ENSOCUG00000011941)
Pika	MODERN SPECIES	5101	TPCN1 (ENSOPRG00000012063)	ENSOPRG00000012057	DDX54 (ENSOPRG00000012000)	ENSOPRG00000011991	RASAL1 (ENSOPRG00000011948)	DTX1 (ENSOPRG00000011918)	OAS3 (ENSOPRG00000011885)	OAS1 (ENSOPRG00000011867)	RPH3A (ENSOPRG00000011845)	PTPN11 (ENSOPRG00000011811)	RPL6 (ENSOPRG00000011800)	ENSOPRG00000011774	ENSOPRG00000019178	ENSOPRG00000011751	TRAFD1 (ENSOPRG00000011730)	NAA25 (ENSOPRG00000011691) ##22	TMEM116 (ENSOPRG00000011672)	ENSOPRG00000011657
Rodentia	ANCESTRAL SPECIES	20	ENSGT00940000158958	ENSGT00730000111354	ENSGT00390000013005	ENSGT00550000075100	ENSGT00940000153110.D	ENSGT00940000158715	ENSGT00940000160943	ENSGT00510000046406.f.b.a.a.d	ENSGT00510000046406.f.b.a.a.c	ENSGT00510000046406.f.b.a.b	ENSGT00940000157468.a.b	ENSGT00940000153876.B	ENSGT00390000003682	ENSGT00910000144226	ENSGT00530000063869.B	ENSGT00950000183174.A ##22	ENSGT00390000018566	ENSGT00390000003209	ENSGT00940000161891	ENSGT00940000154089.b	ENSGT00940000156240	ENSGT00940000161620	ENSGT00500000044909	ENSGT00940000156812	ENSGT00950000183191.b	ENSGT00940000162791	ENSGT00940000160241	ENSGT00940000155578	ENSGT00940000153116.B	ENSGT00940000153472.a.a	ENSGT00940000159403
Rodentia_A	ANCESTRAL SPECIES	19	ENSGT00940000158958	ENSGT00730000111354	ENSGT00390000013005	ENSGT00550000075100	ENSGT00940000153110.D	ENSGT00940000158715	ENSGT00940000160943	ENSGT00510000046406.f.b.a.a.d	ENSGT00510000046406.f.b.a.a.c	ENSGT00510000046406.f.b.a.b	ENSGT00940000157468.a.b	ENSGT00940000153876.B	ENSGT00390000003682	ENSGT00910000144226	ENSGT00530000063869.B	ENSGT00950000183174.A ##22	ENSGT00390000018566	ENSGT00390000003209	ENSGT00940000161891	ENSGT00940000154089.b	ENSGT00940000156240	ENSGT00940000161620	ENSGT00500000044909	ENSGT00940000156812	ENSGT00950000183191.b	ENSGT00940000162791	ENSGT00940000160241	ENSGT00940000155578	ENSGT00940000153116.B	ENSGT00940000153472.a.a	ENSGT00940000159403
Sciuridae	ANCESTRAL SPECIES	24	ENSGT00940000158958	ENSGT00730000111354	ENSGT00390000013005	ENSGT00550000075100	ENSGT00940000153110.D	ENSGT00940000158715	ENSGT00940000160943	ENSGT00510000046406.f.b.a.a.d	ENSGT00510000046406.f.b.a.a.c	ENSGT00510000046406.f.b.a.b	ENSGT00940000157468.a.b	ENSGT00940000153876.B	ENSGT00390000003682	ENSGT00910000144226	ENSGT00530000063869.B	ENSGT00950000183174.A ##22	ENSGT00390000018566	ENSGT00390000003209	ENSGT00940000161891.j	ENSGT00940000161891.i	ENSGT00940000154089.b	ENSGT00940000156240	ENSGT00940000161620	ENSGT00500000044909	ENSGT00940000156812	ENSGT00950000183191.b	ENSGT00940000162791	ENSGT00940000160241	ENSGT00940000155578	ENSGT00940000153116.B	ENSGT00940000153472.a.a
Marmotini	ANCESTRAL SPECIES	52	ENSGT00940000156506.b	ENSGT00940000158066	ENSGT00390000013680.a	ENSGT01070000255591	ENSGT00390000008031	ENSGT00940000158419	ENSGT00390000007050	ENSGT00390000017221	ENSGT00940000155845	ENSGT00390000005653	ENSGT00940000159357	ENSGT00940000158519	ENSGT00550000075072.j	ENSGT00890000139406.b	ENSGT00940000159876	ENSGT00950000183174.A ##22	ENSGT00390000018566	ENSGT00390000003209	ENSGT00940000161891.j	ENSGT00940000161891.i	ENSGT00940000154089.b	ENSGT00940000156240	ENSGT00940000161620	ENSGT00500000044909	ENSGT00940000156812	ENSGT00950000183191.b	ENSGT00940000162791	ENSGT00940000160241	ENSGT00940000155578	ENSGT00950000183252	ENSGT00940000153472.a.a
Alpin marmot	MODERN SPECIES	82	TBX5 (ENSMMMG00000005919)	TBX3 (ENSMMMG00000005859)	ENSMMMG00000005843	ENSMMMG00000005833	ENSMMMG00000005819	RNFT2 (ENSMMMG00000005795)	ENSMMMG00000005782	FBXW8 (ENSMMMG00000005735)	TESC (ENSMMMG00000005721)	FBXO21 (ENSMMMG00000005698)	NOS1 (ENSMMMG00000005518)	KSR2 (ENSMMMG00000005476)	RFC5 (ENSMMMG00000005433)	WSB2 (ENSMMMG00000005407)	VSIG10 (ENSMMMG00000005386)	NAA25 (ENSMMMG00000005354) ##22	ERP29 (ENSMMMG00000005343)	TMEM116 (ENSMMMG00000005272)	ENSMMMG00000005260	MAPKAPK5 (ENSMMMG00000005186)	ALDH2 (ENSMMMG00000005174)	ACAD10 (ENSMMMG00000005112)	BRAP (ENSMMMG00000005073)	ATXN2 (ENSMMMG00000002839)	SH2B3 (ENSMMMG00000002739)	CUX2 (ENSMMMG00000002627)	MYL2 (ENSMMMG00000002606)	ENSMMMG00000002566	PPP1CC (ENSMMMG00000002547)	HVCN1 (ENSMMMG00000002518)	TCTN1 (ENSMMMG00000002486)
Marmotini_b	ANCESTRAL SPECIES	51	ENSGT00940000156506.b	ENSGT00940000158066	ENSGT00390000013680.a	ENSGT01070000255591	ENSGT00390000008031	ENSGT00940000158419	ENSGT00390000007050	ENSGT00390000017221	ENSGT00940000155845	ENSGT00390000005653	ENSGT00940000159357	ENSGT00940000158519	ENSGT00550000075072.j	ENSGT00890000139406.b	ENSGT00940000159876	ENSGT00950000183174.A ##22	ENSGT00390000018566	ENSGT00390000003209	ENSGT00940000161891.j	ENSGT00940000161891.i	ENSGT00940000154089.b	ENSGT00940000156240	ENSGT00940000161620	ENSGT00500000044909	ENSGT00940000156812	ENSGT00950000183191.b	ENSGT00940000162791	ENSGT00940000160241	ENSGT00940000155578	ENSGT00950000183252	ENSGT00940000153472.a.a
Squirrel	MODERN SPECIES	158			TBX5 (ENSSTOG00000003231)	TBX3 (ENSSTOG00000009817)	MED13L (ENSSTOG00000016086)	ENSSTOG00000032893	RNFT2 (ENSSTOG00000015366)	FBXW8 (ENSSTOG00000015018)	TESC (ENSSTOG00000010300)	FBXO21 (ENSSTOG00000008177)	NOS1 (ENSSTOG00000028824)	KSR2 (ENSSTOG00000022344)	RFC5 (ENSSTOG00000004654)	WSB2 (ENSSTOG00000004036)	VSIG10 (ENSSTOG00000025641)	NAA25 (ENSSTOG00000012699) ##22	ERP29 (ENSSTOG00000024615)	TMEM116 (ENSSTOG00000012686)	ENSSTOG00000025548	MAPKAPK5 (ENSSTOG00000026731)	ALDH2 (ENSSTOG00000015009)	ACAD10 (ENSSTOG00000009875)	BRAP (ENSSTOG00000009860)	ATXN2 (ENSSTOG00000000978)	SH2B3 (ENSSTOG00000000971)	ENSSTOG00000002242	MYL2 (ENSSTOG00000027174)	ENSSTOG00000002208	PPP1CC (ENSSTOG00000009437)	HVCN1 (ENSSTOG00000009429)	TCTN1 (ENSSTOG00000009423)
Arctic ground squirrel	MODERN SPECIES	42	TBX5 (ENSUPAG00010010782)	TBX3 (ENSUPAG00010010726)	ENSUPAG00010010720	MED13L (ENSUPAG00010007504)	SPRING1 (ENSUPAG00010007486)	RNFT2 (ENSUPAG00010007473)	HRK (ENSUPAG00010007471)	FBXW8 (ENSUPAG00010007448)	TESC (ENSUPAG00010007437)	FBXO21 (ENSUPAG00010007402)	NOS1 (ENSUPAG00010007188)	KSR2 (ENSUPAG00010007146)	RFC5 (ENSUPAG00010007126)	ENSUPAG00010007120	VSIG10 (ENSUPAG00010007113)	NAA25 (ENSUPAG00010007071) ##22	ERP29 (ENSUPAG00010007062)	TMEM116 (ENSUPAG00010006998)	ENSUPAG00010006989	ENSUPAG00010006980	MAPKAPK5 (ENSUPAG00010006888)	ALDH2 (ENSUPAG00010006806)	ACAD10 (ENSUPAG00010006718)	BRAP (ENSUPAG00010006696)	ATXN2 (ENSUPAG00010006577)	SH2B3 (ENSUPAG00010006562)	PHETA1 (ENSUPAG00010006559)	CUX2 (ENSUPAG00010006513)	MYL2 (ENSUPAG00010006495)	ENSUPAG00010006480	ENSUPAG00010006470
Eurasian red squirrel	MODERN SPECIES	17	ENSSVLG00005013847	RITA1 (ENSSVLG00005013896)	DDX54 (ENSSVLG00005013954)	CFAP73 (ENSSVLG00005014031)	RASAL1 (ENSSVLG00005014197)	DTX1 (ENSSVLG00005014966)	OAS2 (ENSSVLG00005015095)	OAS3 (ENSSVLG00005015222)	OAS1 (ENSSVLG00005004696)	RPH3A (ENSSVLG00005005004)	ENSSVLG00005005276	ENSSVLG00005005449	HECTD4 (ENSSVLG00005005543)	TRAFD1 (ENSSVLG00005005633)	ENSSVLG00005005674	NAA25 (ENSSVLG00005005724) ##22	ERP29 (ENSSVLG00005005849)	TMEM116 (ENSSVLG00005005893)	ENSSVLG00005006082	ENSSVLG00005006128	MAPKAPK5 (ENSSVLG00005006168)	ENSSVLG00005006234	ACAD10 (ENSSVLG00005006390)	BRAP (ENSSVLG00005006432)	ATXN2 (ENSSVLG00005006613)	SH2B3 (ENSSVLG00005007027)	CUX2 (ENSSVLG00005007105)	MYL2 (ENSSVLG00005007282)	CCDC63 (ENSSVLG00005007390)	ENSSVLG00005007483	ENSSVLG00005007501
Hystricomorpha	ANCESTRAL SPECIES		ENSGT00940000158958	ENSGT00730000111354	ENSGT00390000013005	ENSGT00550000075100	ENSGT00940000153110.D	ENSGT00940000158715	ENSGT00940000160943	ENSGT00510000046406.f.b.a.a.d	ENSGT00510000046406.f.b.a.a.c	ENSGT00510000046406.f.b.a.b	ENSGT00940000157468.a.b	ENSGT00940000153876.B	ENSGT00390000003682	ENSGT00910000144226	ENSGT00530000063869.B	ENSGT00950000183174.A ##22	ENSGT00390000018566	ENSGT00390000003209	ENSGT00940000161891	ENSGT00940000154089.b	ENSGT00940000156240	ENSGT00940000161620	ENSGT00500000044909	ENSGT00940000156812	ENSGT00950000183191.b	ENSGT00940000162791	ENSGT00940000160241	ENSGT00940000155578	ENSGT00940000153116.B	ENSGT00940000153472.a.a	ENSGT00940000159403
Hystricomorpha_a	ANCESTRAL SPECIES	49	ENSGT00940000158958	ENSGT00730000111354	ENSGT00390000013005	ENSGT00550000075100	ENSGT00940000153110.D	ENSGT00940000158715	ENSGT00940000160943	ENSGT00510000046406.f.b.a.a.d	ENSGT00510000046406.f.b.a.a.c	ENSGT00510000046406.f.b.a.b	ENSGT00940000157468.a.b	ENSGT00940000153876.B	ENSGT00390000003682	ENSGT00910000144226	ENSGT00530000063869.B	ENSGT00950000183174.A ##22	ENSGT00390000018566	ENSGT00390000003209	ENSGT00940000161891	ENSGT00940000154089.b	ENSGT00940000156240	ENSGT00940000161620	ENSGT00500000044909	ENSGT00940000156812	ENSGT00950000183191.b	ENSGT00940000162791	ENSGT00940000160241	ENSGT00940000155578	ENSGT00940000153116.B	ENSGT00940000153472.a.a	ENSGT00940000159403
Hystricomorpha_b	ANCESTRAL SPECIES	51	ENSGT00530000063509.B	ENSGT00940000157433	ENSGT00940000158958	ENSGT00730000111354	ENSGT00390000013005	ENSGT00550000075100	ENSGT00940000153110.D	ENSGT00940000158715	ENSGT00940000160943	ENSGT00510000046406.f.b.a.a.d	ENSGT00510000046406.f.b.a.a.c	ENSGT00510000046406.f.b.a.b	ENSGT00940000157468.a.b	ENSGT00940000153876.B	ENSGT00910000144226	ENSGT00950000183174.A ##22	ENSGT00390000018566	ENSGT00390000003209	ENSGT00940000164542	ENSGT00940000156240	ENSGT00940000161620	ENSGT00500000044909	ENSGT00940000156812	ENSGT00950000183191.b	ENSGT00940000160241	ENSGT00940000155578	ENSGT00940000153116.B	ENSGT00940000153472.a.a	ENSGT00940000159403	ENSGT00570000079101.a.b	ENSGT00390000011937
Long-tailed chinchilla	MODERN SPECIES	189	TPCN1 (ENSCLAG00000010946)	IQCD (ENSCLAG00000013697)	RITA1 (ENSCLAG00000016321)	DDX54 (ENSCLAG00000010748)	CFAP73 (ENSCLAG00000011324)	RASAL1 (ENSCLAG00000011709)	DTX1 (ENSCLAG00000010608)	OAS2 (ENSCLAG00000013028)	ENSCLAG00000015572	ENSCLAG00000011485	RPH3A (ENSCLAG00000009863)	ENSCLAG00000016972	PTPN11 (ENSCLAG00000014414)	HECTD4 (ENSCLAG00000014425)	ENSCLAG00000009321	NAA25 (ENSCLAG00000013686) ##22	ERP29 (ENSCLAG00000013597)	TMEM116 (ENSCLAG00000009652)	ENSCLAG00000013728	ALDH2 (ENSCLAG00000010958)	ACAD10 (ENSCLAG00000012691)	BRAP (ENSCLAG00000011813)	ATXN2 (ENSCLAG00000009324)	SH2B3 (ENSCLAG00000010678)	CUX2 (ENSCLAG00000011089)	MYL2 (ENSCLAG00000015095)	CCDC63 (ENSCLAG00000013750)	PPP1CC (ENSCLAG00000016336)	HVCN1 (ENSCLAG00000013055)	TCTN1 (ENSCLAG00000012287)	PPTC7 (ENSCLAG00000010971)
Degu	MODERN SPECIES	117	IQCD (ENSODEG00000014045)	RITA1 (ENSODEG00000012280)	DDX54 (ENSODEG00000014863)	CFAP73 (ENSODEG00000012352)	RASAL1 (ENSODEG00000012525)	DTX1 (ENSODEG00000013450)	OAS2 (ENSODEG00000013276)	OAS3 (ENSODEG00000013221)	OAS1 (ENSODEG00000011899)	RPH3A (ENSODEG00000012496)	ENSODEG00000019909	ENSODEG00000011453	PTPN11 (ENSODEG00000012557)	ENSODEG00000011835	HECTD4 (ENSODEG00000012009)	NAA25 (ENSODEG00000010753) ##22	MAPKAPK5 (ENSODEG00000011587)	ENSODEG00000019875	ALDH2 (ENSODEG00000010888)	ENSODEG00000012368	ENSODEG00000012065	BRAP (ENSODEG00000011525)	ATXN2 (ENSODEG00000010798)	SH2B3 (ENSODEG00000012542)	CUX2 (ENSODEG00000013686)	ENSODEG00000010703	MYL2 (ENSODEG00000012393)	ENSODEG00000010371	HVCN1 (ENSODEG00000010422)	PPTC7 (ENSODEG00000010585)	ENSODEG00000010285
Guinea pig	MODERN SPECIES	115							OAS2 (ENSCPOG00000034890)	OAS3 (ENSCPOG00000004153)	OAS1 (ENSCPOG00000037062)	RPH3A (ENSCPOG00000021317)	PTPN11 (ENSCPOG00000013527)	RPL6 (ENSCPOG00000013526)	ENSCPOG00000010251	ENSCPOG00000024908	TRAFD1 (ENSCPOG00000010871)	NAA25 (ENSCPOG00000013361) ##22	ERP29 (ENSCPOG00000010525)	TMEM116 (ENSCPOG00000030900)	ENSCPOG00000022040	MAPKAPK5 (ENSCPOG00000009418)	ALDH2 (ENSCPOG00000013363)	ACAD10 (ENSCPOG00000001399)	BRAP (ENSCPOG00000040148)	ATXN2 (ENSCPOG00000001390)	SH2B3 (ENSCPOG00000001388)	PHETA1 (ENSCPOG00000012505)	CUX2 (ENSCPOG00000020483)	ENSCPOG00000023112	MYL2 (ENSCPOG00000010717)	CCDC63 (ENSCPOG00000010709)	PPP1CC (ENSCPOG00000005698)
Naked mole-rat female	MODERN SPECIES	15	TPCN1 (ENSHGLG00000012159)	IQCD (ENSHGLG00000015686)	RITA1 (ENSHGLG00000011650)	DDX54 (ENSHGLG00000014411)	CFAP73 (ENSHGLG00000010195)	RASAL1 (ENSHGLG00000013250)	DTX1 (ENSHGLG00000035722)	OAS2 (ENSHGLG00000016098)	OAS1 (ENSHGLG00000016286)	RPH3A (ENSHGLG00000015781)	PTPN11 (ENSHGLG00000015906)	ENSHGLG00000006501	HECTD4 (ENSHGLG00000010436)	TRAFD1 (ENSHGLG00000016262)	ENSHGLG00000016323	NAA25 (ENSHGLG00000017392) ##22	ERP29 (ENSHGLG00000014371)	ENSHGLG00000048719	TMEM116 (ENSHGLG00000049039)	MAPKAPK5 (ENSHGLG00000010883)	ENSHGLG00000038988	ALDH2 (ENSHGLG00000010830)	ACAD10 (ENSHGLG00000012632)	BRAP (ENSHGLG00000011992)	ATXN2 (ENSHGLG00000009812)	SH2B3 (ENSHGLG00000036930)	ENSHGLG00000035967	CUX2 (ENSHGLG00000010529)	MYL2 (ENSHGLG00000033685)	CCDC63 (ENSHGLG00000007761)	ENSHGLG00000009104
Rodentia_B	ANCESTRAL SPECIES	22	ENSGT00940000158958	ENSGT00730000111354	ENSGT00390000013005	ENSGT00550000075100	ENSGT00940000153110.D	ENSGT00940000158715	ENSGT00940000160943	ENSGT00510000046406.f.b.a.a.d	ENSGT00510000046406.f.b.a.a.c	ENSGT00510000046406.f.b.a.b	ENSGT00940000157468.a.b	ENSGT00940000153876.B	ENSGT00390000003682	ENSGT00910000144226	ENSGT00530000063869.B	ENSGT00950000183174.A ##22	ENSGT00390000018566	ENSGT00390000003209	ENSGT00940000164542	ENSGT00940000161891	ENSGT00940000154089.b	ENSGT00940000156240	ENSGT00940000161620	ENSGT00500000044909	ENSGT00940000156812	ENSGT00950000183191.b	ENSGT00940000162791	ENSGT00940000160241	ENSGT00940000155578	ENSGT00940000153116.B	ENSGT00940000153472.a.a
Kangaroo rat	MODERN SPECIES	385											Rph3a (ENSDORG00000003533)	Ptpn11 (ENSDORG00000008271)	Rpl6 (ENSDORG00000005793)	Hectd4 (ENSDORG00000006575)	ENSDORG00000029104	ENSDORG00000026744 ##22	ENSDORG00000006696	Mapkapk5 (ENSDORG00000010773)	Aldh2 (ENSDORG00000012759)	Brap (ENSDORG00000003952)	Atxn2 (ENSDORG00000000808)	Myl2 (ENSDORG00000027838)	Ppp1cc (ENSDORG00000010484)	Pptc7 (ENSDORG00000010344)	ENSDORG00000002754	ENSDORG00000008212	Anapc7 (ENSDORG00000000502)	Atp2a2 (ENSDORG00000000500)	Ift81 (ENSDORG00000009586)	Camkk2 (ENSDORG00000003462)	ENSDORG00000027136
Myomorpha	ANCESTRAL SPECIES	30	ENSGT00940000158958	ENSGT00730000111354	ENSGT00390000013005	ENSGT00550000075100	ENSGT00940000153110.D	ENSGT00940000158715	ENSGT00940000160943	ENSGT00510000046406.f.b.a.a.d	ENSGT00510000046406.f.b.a.a.c	ENSGT00510000046406.f.b.a.b	ENSGT00940000157468.a.b	ENSGT00940000153876.B	ENSGT00390000003682	ENSGT00910000144226	ENSGT00530000063869.B	ENSGT00950000183174.A ##22	ENSGT00390000018566	ENSGT00390000003209	ENSGT00940000161891	ENSGT00940000154089.b	ENSGT00940000156240	ENSGT00940000161620	ENSGT00500000044909	ENSGT00940000156812	ENSGT00950000183191.b	ENSGT00940000162791	ENSGT00940000160241	ENSGT00940000155578	ENSGT00940000153116.B	ENSGT00940000153472.a.a	ENSGT00940000159403
Lesser Egyptian jerboa	MODERN SPECIES	196	Arpc3 (ENSJJAG00000015664)	P2rx4 (ENSJJAG00000009713)	Camkk2 (ENSJJAG00000023134)	Anapc5 (ENSJJAG00000015335)	Rnf34 (ENSJJAG00000013367)	ENSJJAG00000010200	Orai1 (ENSJJAG00000003880)	Morn3 (ENSJJAG00000006067)	ENSJJAG00000005317	Rph3a (ENSJJAG00000022547)	ENSJJAG00000017647	ENSJJAG00000016775	ENSJJAG00000016688	Hectd4 (ENSJJAG00000014580)	ENSJJAG00000013034	ENSJJAG00000012893 ##22	Erp29 (ENSJJAG00000012814)	ENSJJAG00000012636	Tmem116 (ENSJJAG00000001140)	ENSJJAG00000000141	Aldh2 (ENSJJAG00000024048)	ENSJJAG00000023508	Brap (ENSJJAG00000023208)	ENSJJAG00000022969	ENSJJAG00000022812	Sh2b3 (ENSJJAG00000022530)	ENSJJAG00000022371	Pheta1 (ENSJJAG00000022209)	Cux2 (ENSJJAG00000021345)	Myl2 (ENSJJAG00000019617)	ENSJJAG00000019211
Muroidea	ANCESTRAL SPECIES	28	ENSGT00940000158958	ENSGT00730000111354	ENSGT00390000013005	ENSGT00550000075100	ENSGT00940000153110.D	ENSGT00940000158715	ENSGT00940000160943	ENSGT00510000046406.f.b.a.a.d	ENSGT00510000046406.f.b.a.a.c	ENSGT00510000046406.f.b.a.b	ENSGT00940000157468.a.b	ENSGT00940000153876.B	ENSGT00390000003682	ENSGT00910000144226	ENSGT00530000063869.B	ENSGT00950000183174.A ##22	ENSGT00390000018566	ENSGT00390000003209	ENSGT00940000161891	ENSGT00940000154089.b	ENSGT00940000156240	ENSGT00940000161620	ENSGT00500000044909	ENSGT00940000156812	ENSGT00950000183191.b	ENSGT00940000162791	ENSGT00940000160241	ENSGT00940000155578	ENSGT00940000153116.B	ENSGT00940000153472.a.a	ENSGT00940000159403
Upper Galilee mountains blind mole rat	MODERN SPECIES	1386	Iqcd (ENSNGAG00000016178)	Rita1 (ENSNGAG00000019490)	Ddx54 (ENSNGAG00000021313)	Cfap73 (ENSNGAG00000021091)	Rasal1 (ENSNGAG00000021435)	Dtx1 (ENSNGAG00000015637)	Oas2 (ENSNGAG00000000513)	Oas3 (ENSNGAG00000005163)	ENSNGAG00000011017	ENSNGAG00000012028	Rph3a (ENSNGAG00000017989)	Ptpn11 (ENSNGAG00000008180)	ENSNGAG00000018268	Hectd4 (ENSNGAG00000000703)	Trafd1 (ENSNGAG00000013405)	ENSNGAG00000017782 ##22	Erp29 (ENSNGAG00000019192)	ENSNGAG00000019879	Mapkapk5 (ENSNGAG00000019670)	Aldh2 (ENSNGAG00000012418)	ENSNGAG00000017577	Brap (ENSNGAG00000018065)	ENSNGAG00000018744	Sh2b3 (ENSNGAG00000020046)	Pheta1 (ENSNGAG00000013725)	ENSNGAG00000014227	ENSNGAG00000015635	Myl2 (ENSNGAG00000000246)	ENSNGAG00000011339	ENSNGAG00000019545	ENSNGAG00000019967
Muroidea_A	ANCESTRAL SPECIES	21	ENSGT00940000158958	ENSGT00730000111354	ENSGT00390000013005	ENSGT00550000075100	ENSGT00940000153110.D	ENSGT00940000158715	ENSGT00940000160943	ENSGT00510000046406.f.b.a.a.d	ENSGT00510000046406.f.b.a.a.c	ENSGT00510000046406.f.b.a.b	ENSGT00940000157468.a.b	ENSGT00940000153876.B	ENSGT00390000003682	ENSGT00910000144226	ENSGT00530000063869.B	ENSGT00950000183174.A ##22	ENSGT00390000018566	ENSGT00390000003209	ENSGT00940000161891.h	ENSGT00940000161891.g	ENSGT00940000154089.b	ENSGT00940000156240	ENSGT00940000161620	ENSGT00500000044909	ENSGT00940000156812	ENSGT00950000183191.b	ENSGT00940000162791	ENSGT00940000160241	ENSGT00940000155578	ENSGT00950000183252	ENSGT00940000153116.B
Murinae	ANCESTRAL SPECIES	20	ENSGT00390000013005	ENSGT00550000075100	ENSGT00940000153110.D	ENSGT00940000158715	ENSGT00940000160943	ENSGT00510000046406.f.b.a.a.d	ENSGT00510000046406.f.b.a.a.c	ENSGT00510000046406.f.b.a.b.q.a.b	ENSGT00510000046406.f.b.a.b.q.b	ENSGT00510000046406.f.b.a.b.r.a.a.a	ENSGT00940000157468.a.b	ENSGT00940000153876.B	ENSGT00390000003682	ENSGT00910000144226	ENSGT00530000063869.B	ENSGT00950000183174.A ##22	ENSGT00390000018566	ENSGT00390000003209	ENSGT00940000161891.h	ENSGT00940000161891.g	ENSGT00940000154089.b	ENSGT00940000156240	ENSGT00940000161620	ENSGT00500000044909	ENSGT00940000156812	ENSGT00950000183191.b	ENSGT00940000162791	ENSGT00940000160241	ENSGT00940000155578	ENSGT00950000183252	ENSGT00940000153116.B
Mus	ANCESTRAL SPECIES	17	ENSGT00390000013005	ENSGT00550000075100	ENSGT00940000153110.D	ENSGT00940000158715	ENSGT00940000160943	ENSGT00510000046406.f.b.a.a.d	ENSGT00510000046406.f.b.a.a.c	ENSGT00510000046406.f.b.a.b.r.a.a.a	ENSGT00510000046406.f.b.a.b.r.a.b	ENSGT00510000046406.f.b.a.b.r.a.a.b	ENSGT00940000157468.a.b	ENSGT00940000153876.B	ENSGT00390000003682	ENSGT00910000144226	ENSGT00530000063869.B	ENSGT00950000183174.A ##22	ENSGT00390000018566	ENSGT00390000003209	ENSGT00940000161891.h	ENSGT00940000161891.g	ENSGT00940000154089.b	ENSGT00940000156240	ENSGT00940000161620.c.b	ENSGT00500000044909	ENSGT00940000156812	ENSGT00950000183191.b	ENSGT00940000162791	ENSGT00940000160241	ENSGT00940000155578	ENSGT00950000183252	ENSGT00940000153472.a.a
Mus_A	ANCESTRAL SPECIES	6	ENSGT00940000153110.D	ENSGT00940000158715	ENSGT00940000160943	ENSGT00510000046406.f.b.a.a.d	ENSGT00510000046406.f.b.a.a.c	ENSGT00510000046406.f.b.a.b.r.a.a.a.c	ENSGT00510000046406.f.b.a.b.r.a.b	ENSGT00510000046406.f.b.a.b.r.a.a.b	ENSGT00510000046406.f.b.a.b.q.a.a	ENSGT00510000046406.f.b.a.b.r.a.a.a.d	ENSGT00940000157468.a.b	ENSGT00940000153876.B	ENSGT00390000003682	ENSGT00910000144226	ENSGT00530000063869.B	ENSGT00950000183174.A ##22	ENSGT00390000018566	ENSGT00390000003209	ENSGT00940000161891.h	ENSGT00940000161891.g	ENSGT00940000154089.b	ENSGT00940000156240	ENSGT00940000161620.c.b	ENSGT00500000044909	ENSGT00940000156812	ENSGT00950000183191.b	ENSGT00940000162791	ENSGT00940000160241	ENSGT00940000155578	ENSGT00950000183252	ENSGT00940000153472.a.a
Mus_B	ANCESTRAL SPECIES	4	ENSGT00550000075100	ENSGT00940000153110.D	ENSGT00940000158715	ENSGT00940000160943	ENSGT00510000046406.f.b.a.a.d	ENSGT00510000046406.f.b.a.a.c	ENSGT00510000046406.f.b.a.b.r.a.a.a.d	ENSGT00510000046406.f.b.a.b.r.a.a.a.c	ENSGT00510000046406.f.b.a.b.r.a.b	ENSGT00510000046406.f.b.a.b.r.a.a.b	ENSGT00940000157468.a.b	ENSGT00940000153876.B	ENSGT00390000003682	ENSGT00910000144226	ENSGT00530000063869.B	ENSGT00950000183174.A ##22	ENSGT00390000018566	ENSGT00390000003209	ENSGT00940000161891.h	ENSGT00940000161891.g	ENSGT00940000154089.b	ENSGT00940000156240	ENSGT00940000161620.c.b	ENSGT00940000161620.c.a	ENSGT00500000044909	ENSGT00940000156812	ENSGT00950000183191.b	ENSGT00940000162791	ENSGT00940000160241	ENSGT00940000155578	ENSGT00950000183252
Mus_C	ANCESTRAL SPECIES	4	ENSGT00550000075100	ENSGT00940000153110.D	ENSGT00940000158715	ENSGT00940000160943	ENSGT00510000046406.f.b.a.a.d	ENSGT00510000046406.f.b.a.a.c	ENSGT00510000046406.f.b.a.b.r.a.a.a.d	ENSGT00510000046406.f.b.a.b.r.a.a.a.c	ENSGT00510000046406.f.b.a.b.q.b	ENSGT00510000046406.f.b.a.b.r.a.a.b	ENSGT00940000157468.a.b	ENSGT00940000153876.B	ENSGT00390000003682.`c	ENSGT00910000144226	ENSGT00530000063869.B	ENSGT00950000183174.A ##22	ENSGT00390000018566	ENSGT00390000003209	ENSGT00940000161891.h	ENSGT00940000161891.g	ENSGT00940000154089.b	ENSGT00940000156240	ENSGT00940000161620.c.b	ENSGT00940000161620.c.a	ENSGT00500000044909	ENSGT00940000156812	ENSGT00950000183191.b	ENSGT00940000162791	ENSGT00940000160241	ENSGT00940000155578	ENSGT00950000183252
Steppe mouse	MODERN SPECIES	3231										Rph3a (ENSMSIG00000010299)	ENSMSIG00000010419	Ptpn11 (ENSMSIG00000010427)	ENSMSIG00000010477	Hectd4 (ENSMSIG00000010503)	ENSMSIG00000010719	Naa25 (ENSMSIG00000010778) ##22	Erp29 (ENSMSIG00000010851)	ENSMSIG00000010870	Adam1b (ENSMSIG00000011075)	Adam1a (ENSMSIG00000011100)	ENSMSIG00000011115	Aldh2 (ENSMSIG00000011278)	ENSMSIG00000011373	Acad10 (ENSMSIG00000011377)	Brap (ENSMSIG00000011400)	Atxn2 (ENSMSIG00000011449)	Sh2b3 (ENSMSIG00000012545)	Pheta1 (ENSMSIG00000012584)	ENSMSIG00000012599	Cux2 (ENSMSIG00000012613)	ENSMSIG00000012743
spretus	MODERN SPECIES	14	Rita1 (MGP_SPRETEiJ_G0028664)	Ddx54 (MGP_SPRETEiJ_G0028665)	Cfap73 (MGP_SPRETEiJ_G0028666)	Rasal1 (MGP_SPRETEiJ_G0028667)	Dtx1 (MGP_SPRETEiJ_G0028668)	Oas2 (MGP_SPRETEiJ_G0028669)	Oas3 (MGP_SPRETEiJ_G0028670)	MGP_SPRETEiJ_G0028671	MGP_SPRETEiJ_G0028672	MGP_SPRETEiJ_G0028673	Rph3a (MGP_SPRETEiJ_G0028674)	Ptpn11 (MGP_SPRETEiJ_G0028675)	MGP_SPRETEiJ_G0028676	Hectd4 (MGP_SPRETEiJ_G0028677)	MGP_SPRETEiJ_G0028678	Naa25 (MGP_SPRETEiJ_G0028679) ##22	Erp29 (MGP_SPRETEiJ_G0028680)	Tmem116 (MGP_SPRETEiJ_G0028681)	Adam1b (MGP_SPRETEiJ_G0028682)	Adam1a (MGP_SPRETEiJ_G0028683)	MGP_SPRETEiJ_G0028684	MGP_SPRETEiJ_G0028685	Aldh2 (MGP_SPRETEiJ_G0028686)	Acad12 (MGP_SPRETEiJ_G0028687)	Brap (MGP_SPRETEiJ_G0028689)	Atxn2 (MGP_SPRETEiJ_G0028690)	Sh2b3 (MGP_SPRETEiJ_G0028691)	Pheta1 (MGP_SPRETEiJ_G0028692)	Cux2 (MGP_SPRETEiJ_G0028693)	Myl2 (MGP_SPRETEiJ_G0028694)	Ccdc63 (MGP_SPRETEiJ_G0028695)
Mouse	MODERN SPECIES	14	Oas2 (ENSMUSG00000032690)	Oas3 (ENSMUSG00000032661)	Oas1e (ENSMUSG00000066867)	Oas1c (ENSMUSG00000001166)	Oas1b (ENSMUSG00000029605)	Oas1f (ENSMUSG00000053765)	Oas1h (ENSMUSG00000001168)	Oas1g (ENSMUSG00000066861)	Oas1a (ENSMUSG00000052776)	Oas1d (ENSMUSG00000032623)	Rph3a (ENSMUSG00000029608)	Ptpn11 (ENSMUSG00000043733)	Rpl6 (ENSMUSG00000029614)	Hectd4 (ENSMUSG00000042744)	Trafd1 (ENSMUSG00000042726)	Naa25 (ENSMUSG00000042719) ##22	Erp29 (ENSMUSG00000029616)	Tmem116 (ENSMUSG00000029452)	Adam1b (ENSMUSG00000062438)	Adam1a (ENSMUSG00000072647)	Mapkapk5 (ENSMUSG00000029454)	ENSMUSG00000121598	Aldh2 (ENSMUSG00000029455)	Acad12 (ENSMUSG00000042647)	Acad10 (ENSMUSG00000029456)	Brap (ENSMUSG00000029458)	Atxn2 (ENSMUSG00000042605)	Sh2b3 (ENSMUSG00000042594)	Pheta1 (ENSMUSG00000044134)	Cux2 (ENSMUSG00000042589)	Myl2 (ENSMUSG00000013936)
Ryukyu mouse	MODERN SPECIES	14	Cfap73 (MGP_CAROLIEiJ_G0027666)	Rasal1 (MGP_CAROLIEiJ_G0027667)	Dtx1 (MGP_CAROLIEiJ_G0027668)	Oas2 (MGP_CAROLIEiJ_G0027669)	Oas3 (MGP_CAROLIEiJ_G0027670)	MGP_CAROLIEiJ_G0027671	MGP_CAROLIEiJ_G0027672	MGP_CAROLIEiJ_G0027673	MGP_CAROLIEiJ_G0027674	MGP_CAROLIEiJ_G0027675	Rph3a (MGP_CAROLIEiJ_G0027676)	Ptpn11 (MGP_CAROLIEiJ_G0027677)	Rpl6 (MGP_CAROLIEiJ_G0027678)	Hectd4 (MGP_CAROLIEiJ_G0027679)	Trafd1 (MGP_CAROLIEiJ_G0027680)	Naa25 (MGP_CAROLIEiJ_G0027681) ##22	Erp29 (MGP_CAROLIEiJ_G0027682)	Tmem116 (MGP_CAROLIEiJ_G0027683)	Adam1b (MGP_CAROLIEiJ_G0027684)	Adam1a (MGP_CAROLIEiJ_G0027685)	MGP_CAROLIEiJ_G0027686	MGP_CAROLIEiJ_G0027687	MGP_CAROLIEiJ_G0027688	MGP_CAROLIEiJ_G0027689	Acad10 (MGP_CAROLIEiJ_G0027690)	Brap (MGP_CAROLIEiJ_G0027691)	Atxn2 (MGP_CAROLIEiJ_G0027692)	Sh2b3 (MGP_CAROLIEiJ_G0027693)	Pheta1 (MGP_CAROLIEiJ_G0027694)	Cux2 (MGP_CAROLIEiJ_G0027695)	MGP_CAROLIEiJ_G0027696
Shrew mouse	MODERN SPECIES	15	Ddx54 (MGP_PahariEiJ_G0024247)	Cfap73 (MGP_PahariEiJ_G0024248)	Rasal1 (MGP_PahariEiJ_G0024249)	Dtx1 (MGP_PahariEiJ_G0024250)	MGP_PahariEiJ_G0024251	Oas3 (MGP_PahariEiJ_G0024252)	MGP_PahariEiJ_G0024253	MGP_PahariEiJ_G0008426	MGP_PahariEiJ_G0024254	Oas1h (MGP_PahariEiJ_G0024255)	Rph3a (MGP_PahariEiJ_G0024256)	Ptpn11 (MGP_PahariEiJ_G0024257)	MGP_PahariEiJ_G0024258	Hectd4 (MGP_PahariEiJ_G0024259)	Trafd1 (MGP_PahariEiJ_G0024260)	Naa25 (MGP_PahariEiJ_G0024261) ##22	Erp29 (MGP_PahariEiJ_G0024262)	MGP_PahariEiJ_G0024263	Adam1b (MGP_PahariEiJ_G0024264)	Adam1a (MGP_PahariEiJ_G0024265)	MGP_PahariEiJ_G0024266	MGP_PahariEiJ_G0024267	Aldh2 (MGP_PahariEiJ_G0024268)	Acad12 (MGP_PahariEiJ_G0024269)	MGP_PahariEiJ_G0024270	Brap (MGP_PahariEiJ_G0024271)	Atxn2 (MGP_PahariEiJ_G0024272)	Sh2b3 (MGP_PahariEiJ_G0024273)	MGP_PahariEiJ_G0024274	Cux2 (MGP_PahariEiJ_G0024275)	MGP_PahariEiJ_G0024276
Rat	MODERN SPECIES	3	Oas3 (ENSRNOG00000059207)	Oas1k (ENSRNOG00000062846)	Oas1e (ENSRNOG00000031726)	Oas1f (ENSRNOG00000033220)	Oas1f (ENSRNOG00000068922)	Oas1h (ENSRNOG00000057769)	Oas1a (ENSRNOG00000001369)	Oas1d (ENSRNOG00000024462)	Oas1i (ENSRNOG00000069835)	Rph3a (ENSRNOG00000001368)	Ptpn11 (ENSRNOG00000030124)	Rpl6 (ENSRNOG00000025936)	Hectd4 (ENSRNOG00000001352)	Trafd1 (ENSRNOG00000001351)	LOC100909911 (ENSRNOG00000029341)	Naa25 (ENSRNOG00000001350) ##22	Erp29 (ENSRNOG00000001348)	Tmem116 (ENSRNOG00000027480)	Adam1b (ENSRNOG00000037801)	Adam1a (ENSRNOG00000001347)	Mapkapk5 (ENSRNOG00000001345)	ENSRNOG00000070432	Aldh2 (ENSRNOG00000037815)	Brap (ENSRNOG00000046497)	Atxn2 (ENSRNOG00000001256)	Sh2b3 (ENSRNOG00000028198)	Pheta1 (ENSRNOG00000028206)	Cux2 (ENSRNOG00000001259)	Myl2 (ENSRNOG00000030848)	Ccdc63 (ENSRNOG00000034266)	Ppp1cc (ENSRNOG00000001269)
Cricetidae	ANCESTRAL SPECIES	20	ENSGT00730000111354	ENSGT00390000013005	ENSGT00550000075100	ENSGT00940000153110.D	ENSGT00940000158715	ENSGT00940000160943	ENSGT00510000046406.f.b.a.a.d	ENSGT00510000046406.f.b.a.a.c	ENSGT00510000046406.f.b.a.b.o.b	ENSGT00510000046406.f.b.a.b.p.b	ENSGT00940000157468.a.b	ENSGT00940000153876.B	ENSGT00390000003682	ENSGT00910000144226	ENSGT00530000063869.B	ENSGT00950000183174.A ##22	ENSGT00390000018566	ENSGT00390000003209	ENSGT00940000161891.h	ENSGT00940000161891.g	ENSGT00940000154089.b	ENSGT00940000156240	ENSGT00940000161620	ENSGT00500000044909	ENSGT00940000156812	ENSGT00950000183191.b	ENSGT00940000162791	ENSGT00940000160241	ENSGT00940000155578	ENSGT00940000153116.B	ENSGT00940000153472.a.a
Cricetinae	ANCESTRAL SPECIES	27									ENSGT00510000046406.f.b.a.b.p.a.a.a	ENSGT00510000046406.f.b.a.b.o.b	ENSGT00940000157468.a.b	ENSGT00940000153876.B	ENSGT00390000003682	ENSGT00910000144226	ENSGT00530000063869.B	ENSGT00950000183174.A ##22	ENSGT00390000018566	ENSGT00390000003209	ENSGT00940000161891.g	ENSGT00940000154089.b	ENSGT00940000156240	ENSGT00940000161620	ENSGT00500000044909	ENSGT00940000156812	ENSGT00950000183191.b	ENSGT00940000162791	ENSGT00940000160241	ENSGT00940000155578	ENSGT00950000183252	ENSGT00940000153472.a.a	ENSGT00940000159403
Golden Hamster	MODERN SPECIES	718									ENSMAUG00000002119	ENSMAUG00000007782	ENSMAUG00000021711	Rph3a (ENSMAUG00000012738)	Ptpn11 (ENSMAUG00000013671)	Hectd4 (ENSMAUG00000013278)	ENSMAUG00000018005	ENSMAUG00000010129 ##22	Erp29 (ENSMAUG00000016320)	Tmem116 (ENSMAUG00000010553)	ENSMAUG00000014502	Aldh2 (ENSMAUG00000009022)	ENSMAUG00000005316	Brap (ENSMAUG00000011069)	ENSMAUG00000008223	Sh2b3 (ENSMAUG00000022193)	Pheta1 (ENSMAUG00000020624)	Cux2 (ENSMAUG00000021970)	Myl2 (ENSMAUG00000021087)	Ccdc63 (ENSMAUG00000014003)	ENSMAUG00000000963	Tctn1 (ENSMAUG00000014982)	Pptc7 (ENSMAUG00000011888)
Chinese hamster chok1gshd	MODERN SPECIES	130	Oas2 (ENSCGRG00001022495)	Oas3 (ENSCGRG00001015857)	ENSCGRG00001012014	ENSCGRG00001000233	ENSCGRG00001008178	ENSCGRG00001001797	ENSCGRG00001014499	ENSCGRG00001012905	ENSCGRG00001017712	ENSCGRG00001016802	Rph3a (ENSCGRG00001015889)	Ptpn11 (ENSCGRG00001017344)	ENSCGRG00001017511	Hectd4 (ENSCGRG00001008267)	Trafd1 (ENSCGRG00001023357)	Naa25 (ENSCGRG00001014602) ##22	Erp29 (ENSCGRG00001003193)	Tmem116 (ENSCGRG00001023364)	Adam1a (ENSCGRG00001014138)	Mapkapk5 (ENSCGRG00001006098)	Aldh2 (ENSCGRG00001011135)	ENSCGRG00001019367	Brap (ENSCGRG00001023987)	Atxn2 (ENSCGRG00001022603)	Sh2b3 (ENSCGRG00001024395)	Pheta1 (ENSCGRG00001023667)	Cux2 (ENSCGRG00001015108)	Myl2 (ENSCGRG00001001094)	Ccdc63 (ENSCGRG00001020405)	Ppp1cc (ENSCGRG00001015081)	Hvcn1 (ENSCGRG00001006607)
Cricetidae_B	ANCESTRAL SPECIES	19	ENSGT00730000111354	ENSGT00390000013005	ENSGT00550000075100	ENSGT00940000153110.D	ENSGT00940000158715	ENSGT00940000160943	ENSGT00510000046406.f.b.a.a.d	ENSGT00510000046406.f.b.a.a.c	ENSGT00510000046406.f.b.a.b.o.b	ENSGT00510000046406.f.b.a.b.p.b	ENSGT00940000157468.a.b	ENSGT00940000153876.B	ENSGT00390000003682	ENSGT00910000144226	ENSGT00530000063869.B	ENSGT00950000183174.A ##22	ENSGT00390000018566	ENSGT00390000003209	ENSGT00940000161891.h	ENSGT00940000161891.g	ENSGT00940000154089.b	ENSGT00940000156240	ENSGT00940000161620	ENSGT00500000044909	ENSGT00940000156812	ENSGT00950000183191.b	ENSGT00940000162791	ENSGT00940000160241	ENSGT00940000155578	ENSGT00940000153116.B	ENSGT00940000153472.a.a
Prairie vole	MODERN SPECIES	7	ENSMOCG00000006544	Ankle2 (ENSMOCG00000016542)	Pgam5 (ENSMOCG00000018637)	Pxmp2 (ENSMOCG00000014970)	Pole (ENSMOCG00000021483)	P2rx2 (ENSMOCG00000013202)	Lrcol1 (ENSMOCG00000007334)	Fbrsl1 (ENSMOCG00000020234)	Galnt9 (ENSMOCG00000011083)	ENSMOCG00000014860	Rph3a (ENSMOCG00000019903)	Ptpn11 (ENSMOCG00000017604)	ENSMOCG00000015858	Hectd4 (ENSMOCG00000000572)	ENSMOCG00000013800	Naa25 (ENSMOCG00000017243) ##22	Erp29 (ENSMOCG00000013561)	ENSMOCG00000007822	Tmem116 (ENSMOCG00000002712)	Mapkapk5 (ENSMOCG00000020026)	Aldh2 (ENSMOCG00000019600)	ENSMOCG00000020267	Brap (ENSMOCG00000013461)	Atxn2 (ENSMOCG00000005219)	Sh2b3 (ENSMOCG00000013499)	Pheta1 (ENSMOCG00000004810)	Cux2 (ENSMOCG00000021745)	Myl2 (ENSMOCG00000010135)	Ccdc63 (ENSMOCG00000001073)	Ppp1cc (ENSMOCG00000009688)	Hvcn1 (ENSMOCG00000010612)
Northern American deer mouse	MODERN SPECIES	15	Cfap73 (ENSPEMG00000018586)	Rasal1 (ENSPEMG00000007719)	Dtx1 (ENSPEMG00000016244)	Oas2 (ENSPEMG00000031163)	Oas3 (ENSPEMG00000016340)	ENSPEMG00000029186	ENSPEMG00000024385	ENSPEMG00000030465	ENSPEMG00000026756	ENSPEMG00000025877	Rph3a (ENSPEMG00000016378)	Ptpn11 (ENSPEMG00000007621)	ENSPEMG00000018540	Hectd4 (ENSPEMG00000018793)	Trafd1 (ENSPEMG00000016056)	Naa25 (ENSPEMG00000015654) ##22	Erp29 (ENSPEMG00000015877)	Tmem116 (ENSPEMG00000017289)	Adam1b (ENSPEMG00000014661)	Adam1a (ENSPEMG00000029614)	Mapkapk5 (ENSPEMG00000018267)	Aldh2 (ENSPEMG00000018983)	ENSPEMG00000007543	Brap (ENSPEMG00000016068)	ENSPEMG00000006648	Atxn2 (ENSPEMG00000015340)	Sh2b3 (ENSPEMG00000014329)	Pheta1 (ENSPEMG00000017553)	Myl2 (ENSPEMG00000011364)	ENSPEMG00000011584	Ppp1cc (ENSPEMG00000000840)
Primates	ANCESTRAL SPECIES	22	ENSGT00940000158958	ENSGT00730000111354	ENSGT00390000013005	ENSGT00550000075100	ENSGT00940000153110.D	ENSGT00940000158715	ENSGT00940000160943	ENSGT00510000046406.f.b.a.a.d	ENSGT00510000046406.f.b.a.a.c	ENSGT00510000046406.f.b.a.b	ENSGT00940000157468.a.b	ENSGT00940000153876.B	ENSGT00390000003682.jb	ENSGT00910000144226	ENSGT00530000063869.B	ENSGT00950000183174.A ##22	ENSGT00390000018566	ENSGT00390000003209	ENSGT00940000161891	ENSGT00940000154089.b	ENSGT00940000156240	ENSGT00940000161620	ENSGT00500000044909	ENSGT00940000156812	ENSGT00950000183191.b	ENSGT00940000162791	ENSGT00940000160241	ENSGT00910000147330	ENSGT00940000155578	ENSGT00940000153116.B	ENSGT00940000153472.a.a
Haplorrhini	ANCESTRAL SPECIES	38	ENSGT00940000158958	ENSGT00730000111354	ENSGT00390000013005	ENSGT00550000075100	ENSGT00940000153110.D	ENSGT00940000158715	ENSGT00940000160943	ENSGT00510000046406.f.b.a.a.d	ENSGT00510000046406.f.b.a.a.c	ENSGT00510000046406.f.b.a.b	ENSGT00940000157468.a.b	ENSGT00940000153876.B	ENSGT00390000003682.ib.a	ENSGT00910000144226	ENSGT00530000063869.B	ENSGT00950000183174.A ##22	ENSGT00390000018566	ENSGT00390000003209	ENSGT00940000161891	ENSGT00940000154089.b	ENSGT00940000156240	ENSGT00940000161620	ENSGT00500000044909	ENSGT00940000156812	ENSGT00950000183191.b	ENSGT00940000162791	ENSGT00940000160241	ENSGT00910000147330	ENSGT00940000155578	ENSGT00940000153116.B	ENSGT00940000153472.a.a
Tarsier	MODERN SPECIES	4691														HECTD4 (ENSTSYG00000000061)	TRAFD1 (ENSTSYG00000002352)	NAA25 (ENSTSYG00000014449) ##22	ERP29 (ENSTSYG00000031095)	ENSTSYG00000034962	ENSTSYG00000012587	TMEM116 (ENSTSYG00000012705)	MAPKAPK5 (ENSTSYG00000011587)
Simiiformes	ANCESTRAL SPECIES	4	ENSGT00940000158958	ENSGT00730000111354	ENSGT00390000013005	ENSGT00550000075100	ENSGT00940000153110.D	ENSGT00940000158715	ENSGT00940000160943	ENSGT00510000046406.f.b.a.a.d	ENSGT00510000046406.f.b.a.a.c	ENSGT00510000046406.f.b.a.b	ENSGT00940000157468.a.b	ENSGT00940000153876.B.j.a.a.a	ENSGT00390000003682.ib.a.b	ENSGT00910000144226	ENSGT00530000063869.B	ENSGT00950000183174.A ##22	ENSGT00390000018566	ENSGT00390000003209	ENSGT00940000161891	ENSGT00940000154089.b	ENSGT00940000156240	ENSGT00940000161620	ENSGT00500000044909	ENSGT00940000156812	ENSGT00950000183191.b	ENSGT00940000162791	ENSGT00940000160241	ENSGT00910000147330	ENSGT00940000155578	ENSGT00940000153116.B	ENSGT00940000153472.a.a
Catarrhini	ANCESTRAL SPECIES	4	ENSGT00730000111354	ENSGT00390000013005	ENSGT00550000075100	ENSGT00940000153110.D	ENSGT00940000158715	ENSGT00940000160943	ENSGT00550000075025.`b.b.a	ENSGT00510000046406.f.b.a.a.d	ENSGT00510000046406.f.b.a.a.c	ENSGT00510000046406.f.b.a.b	ENSGT00940000157468.a.b	ENSGT00940000153876.B.j.a.a.a	ENSGT00390000003682.ib.a.b	ENSGT00910000144226	ENSGT00530000063869.B	ENSGT00950000183174.A ##22	ENSGT00390000018566.i	ENSGT00390000003209	ENSGT00940000161891	ENSGT00940000154089.b	ENSGT00940000156240	ENSGT00940000161620	ENSGT00500000044909	ENSGT00940000156812	ENSGT00950000183191.b	ENSGT00940000162791	ENSGT00940000160241	ENSGT00910000147330	ENSGT00940000155578	ENSGT00940000153116.B	ENSGT00940000153472.a.a
Hominoidea	ANCESTRAL SPECIES	5	ENSGT00730000111354	ENSGT00390000013005	ENSGT00550000075100	ENSGT00940000153110.D	ENSGT00940000158715	ENSGT00940000160943	ENSGT00550000075025.`b.b.a	ENSGT00510000046406.f.b.a.a.d	ENSGT00510000046406.f.b.a.a.c	ENSGT00510000046406.f.b.a.b	ENSGT00940000157468.a.b	ENSGT00940000153876.B.j.a.a.a	ENSGT00390000003682.jb	ENSGT00910000144226	ENSGT00530000063869.B	ENSGT00950000183174.A ##22	ENSGT00390000018566.i	ENSGT00390000003209	ENSGT00940000161891	ENSGT00940000154089.b	ENSGT00940000156240	ENSGT00940000161620	ENSGT00500000044909	ENSGT00940000156812	ENSGT00950000183191.b	ENSGT00940000162791	ENSGT00940000160241	ENSGT00910000147330	ENSGT00940000155578	ENSGT00940000153116.B	ENSGT00940000153472.a.a
Hominidae	ANCESTRAL SPECIES	4	ENSGT00730000111354	ENSGT00390000013005	ENSGT00550000075100	ENSGT00940000153110.D	ENSGT00940000158715	ENSGT00940000160943	ENSGT00550000075025.`b.b.a	ENSGT00510000046406.f.b.a.a.d	ENSGT00510000046406.f.b.a.a.c	ENSGT00510000046406.f.b.a.b	ENSGT00940000157468.a.b	ENSGT00940000153876.B.j.a.a.a	ENSGT00390000003682.jb	ENSGT00910000144226	ENSGT00530000063869.B	ENSGT00950000183174.A ##22	ENSGT00390000018566.i	ENSGT00390000003209	ENSGT00940000161891	ENSGT00940000154089.b	ENSGT00940000156240	ENSGT00940000161620	ENSGT00500000044909	ENSGT00940000156812	ENSGT00950000183191.b	ENSGT00940000162791	ENSGT00940000160241	ENSGT00940000155578	ENSGT00940000153116.B	ENSGT00940000153472.a.a	ENSGT00940000159403
Homo/Pan/Gorilla group	ANCESTRAL SPECIES	5	ENSGT00730000111354	ENSGT00390000013005	ENSGT00550000075100	ENSGT00940000153110.D	ENSGT00940000158715	ENSGT00940000160943	ENSGT00550000075025.`b.b.a	ENSGT00510000046406.f.b.a.a.d	ENSGT00510000046406.f.b.a.a.c	ENSGT00510000046406.f.b.a.b	ENSGT00940000157468.a.b	ENSGT00940000153876.B.j.a.a.a	ENSGT00390000003682.jb	ENSGT00910000144226	ENSGT00530000063869.B	ENSGT00950000183174.A ##22	ENSGT00390000018566.i	ENSGT00390000003209	ENSGT00940000161891	ENSGT00940000154089.b	ENSGT00940000156240	ENSGT00940000161620	ENSGT00500000044909	ENSGT00940000156812	ENSGT00950000183191.b	ENSGT00940000162791	ENSGT00940000160241	ENSGT00940000155578	ENSGT00940000153116.B	ENSGT00940000153472.a.a	ENSGT00940000159403
Homo/Pan group	ANCESTRAL SPECIES	6	ENSGT00730000111354	ENSGT00390000013005	ENSGT00550000075100	ENSGT00940000153110.D	ENSGT00940000158715	ENSGT00940000160943	ENSGT00550000075025.`b.b.a	ENSGT00510000046406.f.b.a.a.d	ENSGT00510000046406.f.b.a.a.c	ENSGT00510000046406.f.b.a.b	ENSGT00940000157468.a.b	ENSGT00940000153876.B.j.a.a.a	ENSGT00390000003682.jb	ENSGT00910000144226	ENSGT00530000063869.B	ENSGT00950000183174.A ##22	ENSGT00390000018566.i	ENSGT00390000003209	ENSGT00940000161891	ENSGT00940000154089.b	ENSGT00940000156240	ENSGT00940000161620	ENSGT00500000044909	ENSGT00940000156812	ENSGT00950000183191.b	ENSGT00940000162791	ENSGT00940000160241	ENSGT00940000155578	ENSGT00940000153116.B	ENSGT00940000153472.a.a	ENSGT00940000159403
Pan	ANCESTRAL SPECIES	4	ENSGT00730000111354	ENSGT00390000013005	ENSGT00550000075100	ENSGT00940000153110.D	ENSGT00940000158715	ENSGT00940000160943	ENSGT00550000075025.`b.b.a	ENSGT00510000046406.f.b.a.a.d	ENSGT00510000046406.f.b.a.a.c	ENSGT00510000046406.f.b.a.b	ENSGT00940000157468.a.b	ENSGT00940000153876.B.j.a.a.a.a	ENSGT00390000003682.jb.e	ENSGT00910000144226	ENSGT00530000063869.B	ENSGT00950000183174.A ##22	ENSGT00390000018566.i	ENSGT00390000003209	ENSGT00940000161891	ENSGT00940000154089.b	ENSGT00940000156240	ENSGT00940000161620	ENSGT00390000010218.f.a.b.b	ENSGT00500000044909	ENSGT00940000156812	ENSGT00950000183191.b	ENSGT00940000162791	ENSGT00940000160241	ENSGT00940000155578	ENSGT00940000153116.B	ENSGT00940000153472.a.a.ib
Bonobo	MODERN SPECIES	3	IQCD (ENSPPAG00000028542)	RITA1 (ENSPPAG00000028844)	DDX54 (ENSPPAG00000042178)	CFAP73 (ENSPPAG00000030507)	RASAL1 (ENSPPAG00000034459)	DTX1 (ENSPPAG00000032215)	ENSPPAG00000039057	OAS2 (ENSPPAG00000034636)	OAS3 (ENSPPAG00000042797)	OAS1 (ENSPPAG00000029859)	RPH3A (ENSPPAG00000036171)	PTPN11 (ENSPPAG00000035662)	ENSPPAG00000009520	HECTD4 (ENSPPAG00000034212)	TRAFD1 (ENSPPAG00000027426)	NAA25 (ENSPPAG00000040769) ##22	ERP29 (ENSPPAG00000041826)	TMEM116 (ENSPPAG00000034779)	ENSPPAG00000029052	MAPKAPK5 (ENSPPAG00000027516)	ALDH2 (ENSPPAG00000011365)	ACAD10 (ENSPPAG00000029940)	ENSPPAG00000032429	BRAP (ENSPPAG00000042331)	ENSPPAG00000032896	ATXN2 (ENSPPAG00000028043)	ENSPPAG00000040842	PHETA1 (ENSPPAG00000034625)	CUX2 (ENSPPAG00000033142)	MYL2 (ENSPPAG00000027917)	CCDC63 (ENSPPAG00000041537)
Chimpanzee	MODERN SPECIES	3	RITA1 (ENSPTRG00000005484)	DDX54 (ENSPTRG00000005483)	CFAP73 (ENSPTRG00000005482)	RASAL1 (ENSPTRG00000005481)	DTX1 (ENSPTRG00000005480)	ENSPTRG00000046865	OAS2 (ENSPTRG00000005479)	OAS3 (ENSPTRG00000005478)	OAS1 (ENSPTRG00000005477)	RPH3A (ENSPTRG00000005476)	ENSPTRG00000048264	RPL6 (ENSPTRG00000052060)	ENSPTRG00000049514	HECTD4 (ENSPTRG00000029538)	TRAFD1 (ENSPTRG00000005470)	NAA25 (ENSPTRG00000005469) ##22	ERP29 (ENSPTRG00000005468)	TMEM116 (ENSPTRG00000005467)	ENSPTRG00000043002	MAPKAPK5 (ENSPTRG00000005465)	ALDH2 (ENSPTRG00000005463)	ACAD10 (ENSPTRG00000005462)	ENSPTRG00000050147	BRAP (ENSPTRG00000005461)	ATXN2 (ENSPTRG00000029540)	SH2B3 (ENSPTRG00000005459)	PHETA1 (ENSPTRG00000050600)	CUX2 (ENSPTRG00000005455)	MYL2 (ENSPTRG00000052804)	CCDC63 (ENSPTRG00000005451)	PPP1CC (ENSPTRG00000005448)
Human	MODERN SPECIES	3	TPCN1 (ENSG00000186815)	IQCD (ENSG00000166578)	RITA1 (ENSG00000139405)	DDX54 (ENSG00000123064)	CFAP73 (ENSG00000186710)	RASAL1 (ENSG00000111344)	DTX1 (ENSG00000135144)	OAS2 (ENSG00000111335)	OAS3 (ENSG00000111331)	OAS1 (ENSG00000089127)	RPH3A (ENSG00000089169)	PTPN11 (ENSG00000179295)	RPL6 (ENSG00000089009)	HECTD4 (ENSG00000173064)	TRAFD1 (ENSG00000135148)	NAA25 (ENSG00000111300) ##22	ERP29 (ENSG00000089248)	TMEM116 (ENSG00000198270)	ENSG00000292259	MAPKAPK5 (ENSG00000089022)	ALDH2 (ENSG00000111275)	ENSG00000257767	ACAD10 (ENSG00000111271)	BRAP (ENSG00000089234)	ATXN2 (ENSG00000204842)	SH2B3 (ENSG00000111252)	PHETA1 (ENSG00000198324)	CUX2 (ENSG00000111249)	MYL2 (ENSG00000111245)	CCDC63 (ENSG00000173093)	PPP1CC (ENSG00000186298)
Gorilla	MODERN SPECIES	3	IQCD (ENSGGOG00000010439)	RITA1 (ENSGGOG00000010436)	DDX54 (ENSGGOG00000010414)	CFAP73 (ENSGGOG00000010405)	RASAL1 (ENSGGOG00000010388)	DTX1 (ENSGGOG00000010380)	ENSGGOG00000040498	OAS2 (ENSGGOG00000008149)	OAS3 (ENSGGOG00000008139)	OAS1 (ENSGGOG00000008132)	RPH3A (ENSGGOG00000008120)	PTPN11 (ENSGGOG00000010689)	RPL6 (ENSGGOG00000003372)	HECTD4 (ENSGGOG00000001169)	TRAFD1 (ENSGGOG00000001166)	NAA25 (ENSGGOG00000007161) ##22	ERP29 (ENSGGOG00000003799)	TMEM116 (ENSGGOG00000003794)	MAPKAPK5 (ENSGGOG00000005717)	ALDH2 (ENSGGOG00000007108)	ACAD10 (ENSGGOG00000007098)	ENSGGOG00000006488	ENSGGOG00000007087	ENSGGOG00000038431	ATXN2 (ENSGGOG00000002137)	SH2B3 (ENSGGOG00000003254)	PHETA1 (ENSGGOG00000009277)	CUX2 (ENSGGOG00000012173)	MYL2 (ENSGGOG00000004869)	CCDC63 (ENSGGOG00000004863)	PPP1CC (ENSGGOG00000011663)
Orangutan	MODERN SPECIES	3	IQCD (ENSPPYG00000004986)	RITA1 (ENSPPYG00000004985)	DDX54 (ENSPPYG00000004984)	CFAP73 (ENSPPYG00000004982)	RASAL1 (ENSPPYG00000004981)	DTX1 (ENSPPYG00000004980)	OAS2 (ENSPPYG00000004979)	OAS3 (ENSPPYG00000004978)	OAS1 (ENSPPYG00000004977)	RPH3A (ENSPPYG00000038966)	PTPN11 (ENSPPYG00000004976)	ENSPPYG00000025855	ENSPPYG00000032243	HECTD4 (ENSPPYG00000004974)	TRAFD1 (ENSPPYG00000004973)	NAA25 (ENSPPYG00000004972) ##22	ERP29 (ENSPPYG00000034288)	TMEM116 (ENSPPYG00000004970)	ENSPPYG00000004969	MAPKAPK5 (ENSPPYG00000004968)	ALDH2 (ENSPPYG00000004966)	ACAD10 (ENSPPYG00000004965)	BRAP (ENSPPYG00000004964)	ATXN2 (ENSPPYG00000004963)	SH2B3 (ENSPPYG00000004962)	CUX2 (ENSPPYG00000004959)	ENSPPYG00000004957	CCDC63 (ENSPPYG00000004956)	PPP1CC (ENSPPYG00000004955)	HVCN1 (ENSPPYG00000004954)	TCTN1 (ENSPPYG00000004953)
Gibbon	MODERN SPECIES		IQCD (ENSNLEG00000000171)	ENSNLEG00000000169	DDX54 (ENSNLEG00000000162)	ENSNLEG00000000161	RASAL1 (ENSNLEG00000000147)	DTX1 (ENSNLEG00000000143)	OAS2 (ENSNLEG00000000137)	OAS3 (ENSNLEG00000000121)	OAS1 (ENSNLEG00000000109)	RPH3A (ENSNLEG00000000092)	ENSNLEG00000035145	PTPN11 (ENSNLEG00000000078)	ENSNLEG00000028372	HECTD4 (ENSNLEG00000000049)	TRAFD1 (ENSNLEG00000000041)	NAA25 (ENSNLEG00000000033) ##22	ERP29 (ENSNLEG00000000031)	ENSNLEG00000028101	TMEM116 (ENSNLEG00000000027)	MAPKAPK5 (ENSNLEG00000000024)	ALDH2 (ENSNLEG00000000016)	ENSNLEG00000029619	ENSNLEG00000000554	ENSNLEG00000028653	BRAP (ENSNLEG00000000543)	ATXN2 (ENSNLEG00000000484)	SH2B3 (ENSNLEG00000000480)	CUX2 (ENSNLEG00000000470)	ENSNLEG00000000469	MYL2 (ENSNLEG00000000446)	CCDC63 (ENSNLEG00000000444)
Cercopithecidae	ANCESTRAL SPECIES	3	ENSGT00390000013005	ENSGT00550000075100	ENSGT00940000153110.D	ENSGT00940000158715	ENSGT00940000160943	ENSGT00550000075025.`b.b.a	ENSGT00510000046406.f.b.a.a.d	ENSGT00510000046406.f.b.a.a.c	ENSGT00510000046406.f.b.a.b	ENSGT00940000157468.a.b	ENSGT00940000153876.B.j.a.a.a	ENSGT00390000003682.ib.a.b.e	ENSGT00390000003682.jb	ENSGT00910000144226	ENSGT00530000063869.B	ENSGT00950000183174.A ##22	ENSGT00390000018566.i	ENSGT00390000003209	ENSGT00940000161891	ENSGT00940000154089.b	ENSGT00940000156240	ENSGT00940000161620	ENSGT00500000044909	ENSGT00940000156812	ENSGT00950000183191.b	ENSGT00940000162791	ENSGT00940000160241	ENSGT00910000147330	ENSGT00940000155578	ENSGT00940000153116.B	ENSGT00940000153472.a.a
Rhinopithecus	ANCESTRAL SPECIES	139											ENSGT00940000153876.B.j.a.a.a	ENSGT00390000003682.ib.a.b.f.b.a.b	ENSGT00390000003682.ib.a.b.f.b.a.a.a	ENSGT00910000144226	ENSGT00530000063869.B	ENSGT00950000183174.A ##22	ENSGT00390000018566.i	ENSGT00390000003209	ENSGT00940000161891	ENSGT00940000161067	ENSGT00940000154089.b	ENSGT00940000156240	ENSGT00940000161620	ENSGT00500000044909	ENSGT00940000156812	ENSGT00950000183191.b	ENSGT00940000162791	ENSGT00940000160241	ENSGT00910000147330	ENSGT00940000155578	ENSGT00940000153116.B
Golden snub-nosed monkey	MODERN SPECIES	697												PTPN11 (ENSRROG00000031729)	ENSRROG00000035199	HECTD4 (ENSRROG00000035781)	TRAFD1 (ENSRROG00000040486)	NAA25 (ENSRROG00000033923) ##22	ERP29 (ENSRROG00000043263)	TMEM116 (ENSRROG00000039153)	ENSRROG00000039791	ENSRROG00000024090	MAPKAPK5 (ENSRROG00000030174)	ALDH2 (ENSRROG00000026411)	ACAD10 (ENSRROG00000041635)	BRAP (ENSRROG00000043712)	ATXN2 (ENSRROG00000031170)	SH2B3 (ENSRROG00000029482)	PHETA1 (ENSRROG00000033911)	CUX2 (ENSRROG00000012252)	ENSRROG00000045224	MYL2 (ENSRROG00000032540)	CCDC63 (ENSRROG00000035844)
Black snub-nosed monkey	MODERN SPECIES	128	MINDY2 (ENSRBIG00000041728)	ADAM10 (ENSRBIG00000029485)	LIPC (ENSRBIG00000044876)	ALDH1A2 (ENSRBIG00000032417)	AQP9 (ENSRBIG00000044874)	MYZAP (ENSRBIG00000039531)	CGNL1 (ENSRBIG00000037972)	TCF12 (ENSRBIG00000028241)	ZNF280D (ENSRBIG00000044744)	MNS1 (ENSRBIG00000040030)	TEX9 (ENSRBIG00000029670)	ENSRBIG00000033708	ENSRBIG00000034756	HECTD4 (ENSRBIG00000034348)	TRAFD1 (ENSRBIG00000038587)	NAA25 (ENSRBIG00000041396) ##22	ERP29 (ENSRBIG00000034678)	TMEM116 (ENSRBIG00000032327)	ENSRBIG00000043828	MAPKAPK5 (ENSRBIG00000040771)	ALDH2 (ENSRBIG00000029956)	ACAD10 (ENSRBIG00000017864)	BRAP (ENSRBIG00000043626)	ATXN2 (ENSRBIG00000039212)	SH2B3 (ENSRBIG00000039617)	PHETA1 (ENSRBIG00000042583)	CUX2 (ENSRBIG00000037165)	MYL2 (ENSRBIG00000033329)	CCDC63 (ENSRBIG00000015288)	PPP1CC (ENSRBIG00000030893)	HVCN1 (ENSRBIG00000031708)
Cercopithecinae	ANCESTRAL SPECIES	7	ENSGT00730000111354	ENSGT00390000013005	ENSGT00550000075100	ENSGT00940000153110.D	ENSGT00940000158715	ENSGT00940000160943	ENSGT00510000046406.f.b.a.a.d	ENSGT00510000046406.f.b.a.a.c	ENSGT00510000046406.f.b.a.b	ENSGT00940000157468.a.b	ENSGT00940000153876.B.j.a.a.a	ENSGT00390000003682.ib.a.b.e	ENSGT00390000003682.jb	ENSGT00910000144226	ENSGT00530000063869.B	ENSGT00950000183174.A ##22	ENSGT00390000018566.i	ENSGT00390000003209	ENSGT00940000161891	ENSGT00940000154089.b	ENSGT00940000156240	ENSGT00940000161620	ENSGT00500000044909	ENSGT00940000156812	ENSGT00950000183191.b	ENSGT00940000162791	ENSGT00940000160241	ENSGT00940000155578	ENSGT00940000153116.B	ENSGT00940000153472.a.a	ENSGT00940000159403
Vervet Monkey	MODERN SPECIES	2	TPCN1 (ENSCSAG00000002421)	IQCD (ENSCSAG00000002424)	RITA1 (ENSCSAG00000002426)	DDX54 (ENSCSAG00000002432)	CFAP73 (ENSCSAG00000002435)	RASAL1 (ENSCSAG00000002444)	DTX1 (ENSCSAG00000002451)	OAS2 (ENSCSAG00000002459)	OAS3 (ENSCSAG00000002467)	OAS1 (ENSCSAG00000002468)	RPH3A (ENSCSAG00000002471)	PTPN11 (ENSCSAG00000002484)	ENSCSAG00000002492	HECTD4 (ENSCSAG00000002504)	TRAFD1 (ENSCSAG00000002509)	NAA25 (ENSCSAG00000002516) ##22	ERP29 (ENSCSAG00000002520)	TMEM116 (ENSCSAG00000002525)	MAPKAPK5 (ENSCSAG00000002532)	ALDH2 (ENSCSAG00000002555)	ACAD10 (ENSCSAG00000002573)	BRAP (ENSCSAG00000002581)	ATXN2 (ENSCSAG00000002590)	SH2B3 (ENSCSAG00000002595)	PHETA1 (ENSCSAG00000018944)	CUX2 (ENSCSAG00000002603)	MYL2 (ENSCSAG00000002612)	CCDC63 (ENSCSAG00000002619)	PPP1CC (ENSCSAG00000002624)	HVCN1 (ENSCSAG00000002625)	ENSCSAG00000002626
Cercopithecinae_a	ANCESTRAL SPECIES	7	ENSGT00940000158958	ENSGT00730000111354	ENSGT00390000013005	ENSGT00550000075100	ENSGT00940000153110.D	ENSGT00940000158715	ENSGT00940000160943	ENSGT00510000046406.f.b.a.a.d	ENSGT00510000046406.f.b.a.a.c	ENSGT00510000046406.f.b.a.b	ENSGT00940000157468.a.b	ENSGT00940000153876.B.j.a.a.a	ENSGT00390000003682.ib.a.b.e	ENSGT00910000144226	ENSGT00530000063869.B	ENSGT00950000183174.A ##22	ENSGT00940000158351.h.b	ENSGT00390000018566.i	ENSGT00390000003209	ENSGT00940000161891	ENSGT00940000154089.b	ENSGT00940000156240	ENSGT00940000161620	ENSGT00500000044909	ENSGT00940000156812	ENSGT00950000183191.b	ENSGT00940000162791	ENSGT00940000160241	ENSGT00940000163842.a.a.b	ENSGT00910000147330	ENSGT00940000155578
Macaca	ANCESTRAL SPECIES	6	ENSGT00940000158958	ENSGT00730000111354	ENSGT00390000013005	ENSGT00550000075100	ENSGT00940000153110.D	ENSGT00940000158715	ENSGT00940000160943	ENSGT00510000046406.f.b.a.a.d	ENSGT00510000046406.f.b.a.a.c	ENSGT00510000046406.f.b.a.b	ENSGT00940000157468.a.b	ENSGT00940000153876.B.j.a.a.a	ENSGT00390000003682.ib.a.b.e	ENSGT00910000144226	ENSGT00530000063869.B	ENSGT00950000183174.A ##22	ENSGT00940000158351.h.b	ENSGT00390000018566.i	ENSGT00390000003209	ENSGT00940000161891	ENSGT00940000161933.`b.b	ENSGT00940000161067	ENSGT00940000154089.b	ENSGT00940000156240	ENSGT00940000161620	ENSGT00500000044909	ENSGT00940000156812	ENSGT00950000183191.b	ENSGT00940000162791	ENSGT00940000160241	ENSGT00940000163842.a.a.b
Macaca_a	ANCESTRAL SPECIES	6	ENSGT00940000158958	ENSGT00730000111354	ENSGT00390000013005	ENSGT00550000075100	ENSGT00940000153110.D	ENSGT00940000158715	ENSGT00940000160943	ENSGT00510000046406.f.b.a.a.d	ENSGT00510000046406.f.b.a.a.c	ENSGT00510000046406.f.b.a.b	ENSGT00940000157468.a.b	ENSGT00940000153876.B.j.a.a.a	ENSGT00390000003682.ib.a.b.e	ENSGT00910000144226	ENSGT00530000063869.B	ENSGT00950000183174.A ##22	ENSGT00390000018566.i.c	ENSGT00390000003209	ENSGT00940000161891	ENSGT00940000154089.b	ENSGT00940000161620	ENSGT00500000044909	ENSGT00940000156812	ENSGT00950000183191.b	ENSGT00500000045640	ENSGT00940000160241	ENSGT00940000155578	ENSGT00940000153116.B	ENSGT00940000153472.a.a.fb.a	ENSGT00940000159403	ENSGT00570000079101.a.b
Rhesus	MODERN SPECIES	2	TPCN1 (ENSMMUG00000004435)	IQCD (ENSMMUG00000001128)	RITA1 (ENSMMUG00000056457)	DDX54 (ENSMMUG00000021795)	CFAP73 (ENSMMUG00000021794)	RASAL1 (ENSMMUG00000021793)	DTX1 (ENSMMUG00000054690)	OAS2 (ENSMMUG00000008505)	OAS3 (ENSMMUG00000046639)	OAS1 (ENSMMUG00000012782)	RPH3A (ENSMMUG00000012778)	PTPN11 (ENSMMUG00000013253)	RPL6 (ENSMMUG00000007433)	HECTD4 (ENSMMUG00000007126)	TRAFD1 (ENSMMUG00000005255)	NAA25 (ENSMMUG00000013917) ##22	ENSMMUG00000043793	ERP29 (ENSMMUG00000054840)	ENSMMUG00000063332	TMEM116 (ENSMMUG00000043209)	ENSMMUG00000042632	ENSMMUG00000057575	ADAM1 (ENSMMUG00000059838)	MAPKAPK5 (ENSMMUG00000022353)	ENSMMUG00000058561	ENSMMUG00000060917	ENSMMUG00000063628	ENSMMUG00000053496	ACAD10 (ENSMMUG00000008336)	BRAP (ENSMMUG00000017107)	ATXN2 (ENSMMUG00000002226)
Crab-eating macaque	MODERN SPECIES	2	CFAP73 (ENSMFAG00000032424)	RASAL1 (ENSMFAG00000016595)	DTX1 (ENSMFAG00000003369)	ENSMFAG00000063090	OAS2 (ENSMFAG00000000924)	OAS3 (ENSMFAG00000039534)	OAS1 (ENSMFAG00000015570)	RPH3A (ENSMFAG00000042100)	PTPN11 (ENSMFAG00000046302)	ENSMFAG00000002566	ENSMFAG00000065492	HECTD4 (ENSMFAG00000002306)	TRAFD1 (ENSMFAG00000001263)	ENSMFAG00000050896	ENSMFAG00000030760	NAA25 (ENSMFAG00000039818) ##22	ENSMFAG00000051506	ENSMFAG00000052177	TMEM116 (ENSMFAG00000043255)	ENSMFAG00000034085	ENSMFAG00000059217	MAPKAPK5 (ENSMFAG00000037746)	ENSMFAG00000052443	ENSMFAG00000065063	ACAD10 (ENSMFAG00000022844)	BRAP (ENSMFAG00000036173)	ATXN2 (ENSMFAG00000000374)	SH2B3 (ENSMFAG00000052483)	CUX2 (ENSMFAG00000045750)	MYL2 (ENSMFAG00000036782)	CCDC63 (ENSMFAG00000014379)
Pig-tailed macaque	MODERN SPECIES	204	TPCN1 (ENSMNEG00000036832)	IQCD (ENSMNEG00000039472)	RITA1 (ENSMNEG00000035751)	DDX54 (ENSMNEG00000043605)	CFAP73 (ENSMNEG00000043850)	RASAL1 (ENSMNEG00000028142)	DTX1 (ENSMNEG00000017014)	OAS2 (ENSMNEG00000030874)	OAS3 (ENSMNEG00000044713)	OAS1 (ENSMNEG00000044618)	RPH3A (ENSMNEG00000035684)	PTPN11 (ENSMNEG00000020423)	ENSMNEG00000028089	HECTD4 (ENSMNEG00000040048)	TRAFD1 (ENSMNEG00000041030)	NAA25 (ENSMNEG00000014428) ##22	ENSMNEG00000034535	ERP29 (ENSMNEG00000017565)	TMEM116 (ENSMNEG00000035790)	ENSMNEG00000002999	ENSMNEG00000031646	MAPKAPK5 (ENSMNEG00000031044)	ALDH2 (ENSMNEG00000037647)	ACAD10 (ENSMNEG00000012113)	BRAP (ENSMNEG00000039413)	ATXN2 (ENSMNEG00000035588)	SH2B3 (ENSMNEG00000031813)	PHETA1 (ENSMNEG00000032747)	CUX2 (ENSMNEG00000039638)	ENSMNEG00000041486	ENSMNEG00000029788
Cercopithecinae_b	ANCESTRAL SPECIES	2	ENSGT00940000158958	ENSGT00730000111354	ENSGT00390000013005	ENSGT00550000075100	ENSGT00940000153110.D	ENSGT00940000158715	ENSGT00940000160943	ENSGT00510000046406.f.b.a.a.d	ENSGT00510000046406.f.b.a.a.c	ENSGT00510000046406.f.b.a.b	ENSGT00940000157468.a.b	ENSGT00940000153876.B.j.a.a.a	ENSGT00390000003682.jb	ENSGT00910000144226	ENSGT00530000063869.B	ENSGT00950000183174.A ##22	ENSGT00940000158351.h.b	ENSGT00390000018566.i	ENSGT00390000003209	ENSGT00940000161891	ENSGT00940000161067	ENSGT00940000154089.b	ENSGT00940000156240	ENSGT00940000161620	ENSGT00500000044909	ENSGT00940000156812	ENSGT00950000183191.b	ENSGT00940000162791	ENSGT00940000160241	ENSGT00940000163842.a.a.b	ENSGT00910000147330
Olive baboon	MODERN SPECIES	19	IQCD (ENSPANG00000017166)	RITA1 (ENSPANG00000005344)	DDX54 (ENSPANG00000008883)	CFAP73 (ENSPANG00000023466)	RASAL1 (ENSPANG00000007320)	DTX1 (ENSPANG00000009637)	OAS2 (ENSPANG00000008227)	OAS3 (ENSPANG00000017167)	OAS1 (ENSPANG00000007338)	RPH3A (ENSPANG00000005557)	PTPN11 (ENSPANG00000017824)	ENSPANG00000022545	HECTD4 (ENSPANG00000005124)	TRAFD1 (ENSPANG00000011476)	ENSPANG00000031197	NAA25 (ENSPANG00000010015) ##22	ERP29 (ENSPANG00000003387)	TMEM116 (ENSPANG00000019667)	MAPKAPK5 (ENSPANG00000018415)	ALDH2 (ENSPANG00000003697)	ACAD10 (ENSPANG00000022857)	BRAP (ENSPANG00000010016)	ATXN2 (ENSPANG00000017168)	SH2B3 (ENSPANG00000009638)	PHETA1 (ENSPANG00000008709)	ENSPANG00000011547	CUX2 (ENSPANG00000011477)	MYL2 (ENSPANG00000022959)	CCDC63 (ENSPANG00000024913)	ENSPANG00000016506	ENSPANG00000048681
Cercopithecinae_d	ANCESTRAL SPECIES	5	ENSGT00940000158958	ENSGT00730000111354	ENSGT00390000013005	ENSGT00550000075100	ENSGT00940000153110.D	ENSGT00940000158715	ENSGT00940000160943	ENSGT00510000046406.f.b.a.a.d	ENSGT00510000046406.f.b.a.a.c	ENSGT00510000046406.f.b.a.b	ENSGT00940000157468.a.b	ENSGT00940000153876.B.j.a.a.a	ENSGT00390000003682.jb	ENSGT00910000144226	ENSGT00530000063869.B	ENSGT00950000183174.A ##22	ENSGT00940000158351.h.b	ENSGT00390000018566.i	ENSGT00390000003209	ENSGT00940000161891	ENSGT00940000161067	ENSGT00940000154089.b	ENSGT00940000156240	ENSGT00940000161620	ENSGT00500000044909	ENSGT00940000156812	ENSGT00950000183191.b	ENSGT00940000162791	ENSGT00940000160241	ENSGT00940000163842.a.a.b	ENSGT00910000147330
Drill	MODERN SPECIES	1248	IQCD (ENSMLEG00000013908)	RITA1 (ENSMLEG00000037998)	DDX54 (ENSMLEG00000038981)	CFAP73 (ENSMLEG00000041850)	RASAL1 (ENSMLEG00000039131)	DTX1 (ENSMLEG00000043212)	OAS2 (ENSMLEG00000007181)	OAS3 (ENSMLEG00000040673)	OAS1 (ENSMLEG00000005932)	RPH3A (ENSMLEG00000037778)	PTPN11 (ENSMLEG00000026873)	ENSMLEG00000041058	HECTD4 (ENSMLEG00000037331)	TRAFD1 (ENSMLEG00000042284)	ENSMLEG00000029490	NAA25 (ENSMLEG00000041295) ##22	ENSMLEG00000019944	ENSMLEG00000043704	TMEM116 (ENSMLEG00000038603)	ENSMLEG00000027750	ENSMLEG00000036612	MAPKAPK5 (ENSMLEG00000038888)	ALDH2 (ENSMLEG00000034294)	ACAD10 (ENSMLEG00000028229)	BRAP (ENSMLEG00000036096)	ATXN2 (ENSMLEG00000024324)	SH2B3 (ENSMLEG00000034486)	PHETA1 (ENSMLEG00000043565)	CUX2 (ENSMLEG00000040689)	MYL2 (ENSMLEG00000031628)	CCDC63 (ENSMLEG00000005549)
Sooty mangabey	MODERN SPECIES	406	TPCN1 (ENSCATG00000021215)	IQCD (ENSCATG00000033276)	RITA1 (ENSCATG00000022022)	DDX54 (ENSCATG00000041943)	CFAP73 (ENSCATG00000033911)	RASAL1 (ENSCATG00000036078)	DTX1 (ENSCATG00000045075)	OAS2 (ENSCATG00000041022)	OAS3 (ENSCATG00000034991)	OAS1 (ENSCATG00000038529)	RPH3A (ENSCATG00000034043)	PTPN11 (ENSCATG00000033636)	ENSCATG00000034834	HECTD4 (ENSCATG00000044703)	TRAFD1 (ENSCATG00000015673)	NAA25 (ENSCATG00000036764) ##22	ENSCATG00000032369	ERP29 (ENSCATG00000032270)	TMEM116 (ENSCATG00000038762)	ENSCATG00000042021	ENSCATG00000042074	MAPKAPK5 (ENSCATG00000040227)	ALDH2 (ENSCATG00000039223)	ACAD10 (ENSCATG00000009539)	BRAP (ENSCATG00000036613)	ENSCATG00000041812	ENSCATG00000037140	ATXN2 (ENSCATG00000017877)	ENSCATG00000044362	SH2B3 (ENSCATG00000042007)	PHETA1 (ENSCATG00000030652)
Platyrrhini	ANCESTRAL SPECIES	6	ENSGT00940000158958	ENSGT00730000111354	ENSGT00390000013005	ENSGT00550000075100	ENSGT00940000153110.D	ENSGT00940000158715	ENSGT00940000160943	ENSGT00510000046406.f.b.a.a.d	ENSGT00510000046406.f.b.a.a.c	ENSGT00510000046406.f.b.a.b	ENSGT00940000157468.a.b	ENSGT00940000153876.B.i	ENSGT00390000003682.ib.b.d	ENSGT00910000144226	ENSGT00530000063869.B	ENSGT00950000183174.A ##22	ENSGT00390000018566	ENSGT00940000156605.c.b	ENSGT00390000003209	ENSGT00940000161891	ENSGT00940000154089.b	ENSGT00940000156240	ENSGT00940000161620	ENSGT00500000044909	ENSGT00940000156812	ENSGT00950000183191.b	ENSGT00940000162791	ENSGT00940000160241	ENSGT00940000155578	ENSGT00940000153116.B	ENSGT00940000153472.a.a.db.a.a
Mas night monkey	MODERN SPECIES	844	RITA1 (ENSANAG00000020137)	ENSANAG00000032761	CFAP73 (ENSANAG00000036527)	RASAL1 (ENSANAG00000037236)	DTX1 (ENSANAG00000020051)	OAS2 (ENSANAG00000029234)	OAS3 (ENSANAG00000013699)	OAS1 (ENSANAG00000028558)	RPH3A (ENSANAG00000031686)	ENSANAG00000027910	ENSANAG00000029781	HECTD4 (ENSANAG00000021500)	ENSANAG00000035893	ENSANAG00000024389	TRAFD1 (ENSANAG00000028186)	NAA25 (ENSANAG00000021267) ##22	ERP29 (ENSANAG00000033954)	TMEM116 (ENSANAG00000023293)	ENSANAG00000023212	ENSANAG00000034720	MAPKAPK5 (ENSANAG00000023298)	ALDH2 (ENSANAG00000026834)	ACAD10 (ENSANAG00000029583)	BRAP (ENSANAG00000036798)	ENSANAG00000032777	ATXN2 (ENSANAG00000022522)	ENSANAG00000009423 #14	SH2B3 (ENSANAG00000024383)	CUX2 (ENSANAG00000031856)	CCDC63 (ENSANAG00000030031)	ENSANAG00000036948
Cebidae	ANCESTRAL SPECIES	2	ENSGT00390000013005	ENSGT00550000075100	ENSGT00940000153110.D	ENSGT00940000158715	ENSGT00940000160943	ENSGT00510000046406.f.b.a.a.d	ENSGT00510000046406.f.b.a.a.c	ENSGT00510000046406.f.b.a.b	ENSGT00940000157468.a.b	ENSGT00940000153876.B.i	ENSGT00390000003682.ib.b.d	ENSGT00940000153876.B.j.a.a.b	ENSGT00390000003682.jb	ENSGT00910000144226	ENSGT00530000063869.B	ENSGT00950000183174.A ##22	ENSGT00390000018566	ENSGT00940000156605.c.b	ENSGT00390000003209	ENSGT00940000161891	ENSGT00940000154089.b	ENSGT00940000156240	ENSGT00940000161620	ENSGT00500000044909	ENSGT00940000156812	ENSGT00950000183191.b	ENSGT00940000162791	ENSGT00940000160241	ENSGT00940000155578	ENSGT00940000153116.B	ENSGT00940000153472.a.a.db.a.a.b
Marmoset	MODERN SPECIES	21	TPCN1 (ENSCJAG00000009898)	IQCD (ENSCJAG00000009998)	RITA1 (ENSCJAG00000043916)	DDX54 (ENSCJAG00000010039)	CFAP73 (ENSCJAG00000012751)	RASAL1 (ENSCJAG00000012690)	DTX1 (ENSCJAG00000037126)	OAS2 (ENSCJAG00000012666)	OAS3 (ENSCJAG00000012642)	OAS1 (ENSCJAG00000012624)	RPH3A (ENSCJAG00000012544)	ENSCJAG00000012464	ENSCJAG00000084186	HECTD4 (ENSCJAG00000012317)	TRAFD1 (ENSCJAG00000012271)	NAA25 (ENSCJAG00000012131) ##22	ERP29 (ENSCJAG00000048643)	TMEM116 (ENSCJAG00000012100)	MAPKAPK5 (ENSCJAG00000012029)	ALDH2 (ENSCJAG00000011989)	ACAD10 (ENSCJAG00000011944)	BRAP (ENSCJAG00000047673)	ATXN2 (ENSCJAG00000011756)	SH2B3 (ENSCJAG00000011750)	ENSCJAG00000054505	PHETA1 (ENSCJAG00000039342)	CUX2 (ENSCJAG00000011694)	MYL2 (ENSCJAG00000041889)	CCDC63 (ENSCJAG00000011660)	ENSCJAG00000071858	ENSCJAG00000081299
Cebidae_a	ANCESTRAL SPECIES	8	ENSGT00730000111354	ENSGT00390000013005	ENSGT00550000075100	ENSGT00940000153110.D	ENSGT00940000158715	ENSGT00940000160943	ENSGT00510000046406.f.b.a.a.d	ENSGT00510000046406.f.b.a.a.c	ENSGT00510000046406.f.b.a.b	ENSGT00940000157468.a.b	ENSGT00940000153876.B.i	ENSGT00940000153876.B.j.a.a.b	ENSGT00390000003682.jb	ENSGT00910000144226	ENSGT00530000063869.B	ENSGT00950000183174.A ##22	ENSGT00390000018566	ENSGT00940000156605.c.b	ENSGT00390000003209	ENSGT00940000161891	ENSGT00940000154089.b	ENSGT00940000156240	ENSGT00940000161620	ENSGT00500000044909	ENSGT00940000156812	ENSGT00950000183191.b	ENSGT00940000162791	ENSGT00940000160241	ENSGT00940000155578	ENSGT00940000153116.B	ENSGT00940000153472.a.a.db.a.a.b
Capuchin	MODERN SPECIES	8	TPCN1 (ENSCCAG00000018033)	IQCD (ENSCCAG00000031044)	RITA1 (ENSCCAG00000035806)	DDX54 (ENSCCAG00000022625)	CFAP73 (ENSCCAG00000012732)	RASAL1 (ENSCCAG00000037050)	DTX1 (ENSCCAG00000018591)	OAS2 (ENSCCAG00000023534)	ENSCCAG00000018803	OAS1 (ENSCCAG00000018223)	RPH3A (ENSCCAG00000033364)	ENSCCAG00000034238	ENSCCAG00000024005	HECTD4 (ENSCCAG00000025804)	TRAFD1 (ENSCCAG00000036224)	NAA25 (ENSCCAG00000034272) ##22	ERP29 (ENSCCAG00000032895)	ENSCCAG00000030084	ENSCCAG00000020604	TMEM116 (ENSCCAG00000030427)	ENSCCAG00000025363	MAPKAPK5 (ENSCCAG00000024998)	ENSCCAG00000019331	ALDH2 (ENSCCAG00000033005)	ACAD10 (ENSCCAG00000027525)	BRAP (ENSCCAG00000035296)	ATXN2 (ENSCCAG00000026267)	SH2B3 (ENSCCAG00000028333)	PHETA1 (ENSCCAG00000024913)	CUX2 (ENSCCAG00000020003)	MYL2 (ENSCCAG00000022041)
Bolivian squirrel monkey	MODERN SPECIES	90	TPCN1 (ENSSBOG00000002434)	IQCD (ENSSBOG00000030489)	RITA1 (ENSSBOG00000029773)	DDX54 (ENSSBOG00000028194)	CFAP73 (ENSSBOG00000026833)	RASAL1 (ENSSBOG00000031546)	DTX1 (ENSSBOG00000030409)	OAS2 (ENSSBOG00000031252)	OAS3 (ENSSBOG00000025552)	OAS1 (ENSSBOG00000035808)	RPH3A (ENSSBOG00000031419)	ENSSBOG00000032884	ENSSBOG00000036238	HECTD4 (ENSSBOG00000025803)	TRAFD1 (ENSSBOG00000025297)	NAA25 (ENSSBOG00000029596) ##22	ERP29 (ENSSBOG00000001451)	TMEM116 (ENSSBOG00000031740)	ENSSBOG00000017337	ENSSBOG00000017933	MAPKAPK5 (ENSSBOG00000017255)	ALDH2 (ENSSBOG00000020811)	ACAD10 (ENSSBOG00000019040)	BRAP (ENSSBOG00000035284)	ATXN2 (ENSSBOG00000031563)	ENSSBOG00000027997	SH2B3 (ENSSBOG00000023579)	PHETA1 (ENSSBOG00000027929)	CUX2 (ENSSBOG00000025164)	MYL2 (ENSSBOG00000026936)	CCDC63 (ENSSBOG00000003972)
Strepsirrhini	ANCESTRAL SPECIES	19	ENSGT00940000158958	ENSGT00730000111354	ENSGT00390000013005	ENSGT00550000075100	ENSGT00940000153110.D	ENSGT00940000158715	ENSGT00940000160943	ENSGT00510000046406.f.b.a.a.d	ENSGT00510000046406.f.b.a.a.c	ENSGT00510000046406.f.b.a.b	ENSGT00940000157468.a.b	ENSGT00940000153876.B	ENSGT00390000003682.jb	ENSGT00910000144226	ENSGT00530000063869.B	ENSGT00950000183174.A ##22	ENSGT00390000018566	ENSGT00940000161891.c	ENSGT00940000161891.d	ENSGT00940000154089.b	ENSGT00940000156240	ENSGT00940000161620	ENSGT00500000044909	ENSGT00940000156812	ENSGT00950000183191.b	ENSGT00940000162791	ENSGT00940000160241	ENSGT00910000147330	ENSGT00940000155578	ENSGT00940000153116.B	ENSGT00940000153472.a.a
Bushbaby	MODERN SPECIES	153	ENSOGAG00000033479	IQCD (ENSOGAG00000032287)	RITA1 (ENSOGAG00000004214)	DDX54 (ENSOGAG00000004210)	CFAP73 (ENSOGAG00000033970)	RASAL1 (ENSOGAG00000004208)	DTX1 (ENSOGAG00000030292)	OAS2 (ENSOGAG00000004204)	OAS3 (ENSOGAG00000004202)	OAS1 (ENSOGAG00000014935)	RPH3A (ENSOGAG00000004199)	PTPN11 (ENSOGAG00000000348)	ENSOGAG00000000347	HECTD4 (ENSOGAG00000026797)	TRAFD1 (ENSOGAG00000001150)	NAA25 (ENSOGAG00000012003) ##22	ENSOGAG00000028192	ENSOGAG00000031782
Lemuriformes	ANCESTRAL SPECIES	20	ENSGT00530000063509.B	ENSGT00940000157433	ENSGT00940000158958	ENSGT00730000111354	ENSGT00390000013005	ENSGT00550000075100	ENSGT00940000153110.D	ENSGT00940000158715	ENSGT00940000160943	ENSGT00510000046406.f.b.a.a.d	ENSGT00940000157468.a.b	ENSGT00940000153876.B	ENSGT00390000003682.jb.d	ENSGT00910000144226	ENSGT00530000063869.B	ENSGT00950000183174.A ##22	ENSGT00390000018566.g	ENSGT00940000161891.c	ENSGT00940000161891.d	ENSGT00940000154089.b	ENSGT00940000156240	ENSGT00940000161620	ENSGT00500000044909	ENSGT00940000156812	ENSGT00950000183191.b	ENSGT00940000162791	ENSGT00940000160241	ENSGT00910000147330	ENSGT00940000155578	ENSGT00940000153116.B	ENSGT00940000153472.a.a
Lemuriformes_a	ANCESTRAL SPECIES	44	ENSGT00530000063509.B	ENSGT00940000157433	ENSGT00940000158958	ENSGT00730000111354	ENSGT00390000013005	ENSGT00550000075100	ENSGT00940000153110.D	ENSGT00940000158715	ENSGT00940000160943	ENSGT00510000046406.f.b.a.a.d	ENSGT00940000157468.a.b	ENSGT00940000153876.B	ENSGT00390000003682.jb.d	ENSGT00910000144226	ENSGT00530000063869.B	ENSGT00950000183174.A ##22	ENSGT00390000018566.g	ENSGT00940000161891.c	ENSGT00940000161891.d	ENSGT00940000154089.b	ENSGT00940000156240	ENSGT00940000161620	ENSGT00500000044909	ENSGT00940000156812	ENSGT00950000183191.b	ENSGT00940000162791	ENSGT00940000160241	ENSGT00910000147330	ENSGT00940000155578	ENSGT00940000153116.B	ENSGT00940000153472.a.a
Greater bamboo lemur	MODERN SPECIES	81	TPCN1 (ENSPSMG00000001677)	IQCD (ENSPSMG00000001610)	RITA1 (ENSPSMG00000001600)	DDX54 (ENSPSMG00000001555)	CFAP73 (ENSPSMG00000001474)	RASAL1 (ENSPSMG00000001457)	DTX1 (ENSPSMG00000001408)	OAS2 (ENSPSMG00000001389)	OAS3 (ENSPSMG00000001358)	OAS1 (ENSPSMG00000001238)	RPH3A (ENSPSMG00000000713)	PTPN11 (ENSPSMG00000000388)	ENSPSMG00000000313	HECTD4 (ENSPSMG00000000274)	TRAFD1 (ENSPSMG00000000040)	NAA25 (ENSPSMG00000025783) ##22	ERP29 (ENSPSMG00000025781)	ENSPSMG00000025778	ENSPSMG00000025777	MAPKAPK5 (ENSPSMG00000025772)	ALDH2 (ENSPSMG00000025767)	ACAD10 (ENSPSMG00000025762)	BRAP (ENSPSMG00000025757)	ATXN2 (ENSPSMG00000025748)	SH2B3 (ENSPSMG00000025734)	ENSPSMG00000025732	CUX2 (ENSPSMG00000025731)	ENSPSMG00000025727	ENSPSMG00000025726	MYL2 (ENSPSMG00000025724)	CCDC63 (ENSPSMG00000025718)
Coquerels sifaka	MODERN SPECIES	933	PLBD2 (ENSPCOG00000015183)	SLC8B1 (ENSPCOG00000012983)	TPCN1 (ENSPCOG00000025194)	IQCD (ENSPCOG00000025788)	RITA1 (ENSPCOG00000013158)	DDX54 (ENSPCOG00000006050)	CFAP73 (ENSPCOG00000020698)	RASAL1 (ENSPCOG00000020870)	DTX1 (ENSPCOG00000013719)	OAS2 (ENSPCOG00000023904)	RPH3A (ENSPCOG00000028297)	PTPN11 (ENSPCOG00000027416)	RPL6 (ENSPCOG00000024994)	HECTD4 (ENSPCOG00000021345)	TRAFD1 (ENSPCOG00000019489)	NAA25 (ENSPCOG00000022768) ##22	ENSPCOG00000027820	ENSPCOG00000015548	MAPKAPK5 (ENSPCOG00000023918)	ENSPCOG00000027918	ACAD10 (ENSPCOG00000018025)	BRAP (ENSPCOG00000018207)	ATXN2 (ENSPCOG00000022031)	SH2B3 (ENSPCOG00000027311)	PHETA1 (ENSPCOG00000017564)	CUX2 (ENSPCOG00000017186)	MYL2 (ENSPCOG00000021080)	CCDC63 (ENSPCOG00000025253)	PPP1CC (ENSPCOG00000022950)	HVCN1 (ENSPCOG00000025996)	TCTN1 (ENSPCOG00000017305)
Mouse lemur	DUPLICATION
Mouse lemur	MODERN SPECIES	13	PGAM5 (ENSMICG00000003984)	ANKLE2 (ENSMICG00000003987)	GOLGA3 (ENSMICG00000003997)	CHFR (ENSMICG00000004011)	ZNF605 (ENSMICG00000027486)	ZNF26 (ENSMICG00000043825)	ZNF84 (ENSMICG00000031977)	ZNF140 (ENSMICG00000029979)	ZNF10 (ENSMICG00000015899)	ZNF268 (ENSMICG00000034406)	ANHX (ENSMICG00000034864)	ENSMICG00000011410	ENSMICG00000002961	HECTD4 (ENSMICG00000031645)	TRAFD1 (ENSMICG00000039369)	ENSMICG00000031690 ##22	NAA25 (ENSMICG00000013873) ##22	ENSMICG00000038501	ENSMICG00000002072	ENSMICG00000029924	MAPKAPK5 (ENSMICG00000010509)	ALDH2 (ENSMICG00000003487)	ENSMICG00000029763	ACAD10 (ENSMICG00000003477)	BRAP (ENSMICG00000003473)	ATXN2 (ENSMICG00000013541)	SH2B3 (ENSMICG00000013525)	CUX2 (ENSMICG00000012274)	MYL2 (ENSMICG00000004969)	CCDC63 (ENSMICG00000004966)	ENSMICG00000004963
Mouse lemur	MODERN SPECIES	13	ANKLE2 (ENSMICG00000003987)	GOLGA3 (ENSMICG00000003997)	CHFR (ENSMICG00000004011)	ZNF605 (ENSMICG00000027486)	ZNF26 (ENSMICG00000043825)	ZNF84 (ENSMICG00000031977)	ZNF140 (ENSMICG00000029979)	ZNF10 (ENSMICG00000015899)	ZNF268 (ENSMICG00000034406)	ANHX (ENSMICG00000034864)	ENSMICG00000011410	ENSMICG00000002961	HECTD4 (ENSMICG00000031645)	TRAFD1 (ENSMICG00000039369)	ENSMICG00000031690 ##22	NAA25 (ENSMICG00000013873) ##22	ENSMICG00000038501	ENSMICG00000002072	ENSMICG00000029924	MAPKAPK5 (ENSMICG00000010509)	ALDH2 (ENSMICG00000003487)	ENSMICG00000029763	ACAD10 (ENSMICG00000003477)	BRAP (ENSMICG00000003473)	ATXN2 (ENSMICG00000013541)	SH2B3 (ENSMICG00000013525)	CUX2 (ENSMICG00000012274)	MYL2 (ENSMICG00000004969)	CCDC63 (ENSMICG00000004966)	ENSMICG00000004963	HVCN1 (ENSMICG00000004957)
Laurasiatheria	ANCESTRAL SPECIES	19	ENSGT00530000063509.B	ENSGT00940000157433	ENSGT00940000158958	ENSGT00730000111354	ENSGT00390000013005	ENSGT00550000075100	ENSGT00940000153110.D	ENSGT00940000158715	ENSGT00940000160943	ENSGT00510000046406.f.b.a.a.d	ENSGT00510000046406.f.b.a.a.c	ENSGT00510000046406.f.b.a.b	ENSGT00940000157468.a.b	ENSGT00910000144226	ENSGT00530000063869.B	ENSGT00950000183174.A ##22	ENSGT00390000018566	ENSGT00390000003209	ENSGT00940000161891	ENSGT00940000154089.b	ENSGT00940000156240	ENSGT00940000161620	ENSGT00940000164635	ENSGT00500000044909	ENSGT00940000156812	ENSGT00950000183191.b	ENSGT00940000162791	ENSGT00940000160241	ENSGT00940000155578	ENSGT00940000153116.B	ENSGT00940000153472.a.a
Eulipotyphla	ANCESTRAL SPECIES	763																ENSGT00950000183174.A ##22	ENSGT00390000018566	ENSGT00390000003209
Common shrew	MODERN SPECIES	6549																NAA25 (ENSSARG00000011429) ##22	ERP29 (ENSSARG00000011409)	TMEM116 (ENSSARG00000011401)
Hedgehog	MODERN SPECIES	1343																ENSEEUG00000005347 ##22
Laurasiatheria_a	ANCESTRAL SPECIES	13	ENSGT00940000158958	ENSGT00730000111354	ENSGT00390000013005	ENSGT00550000075100	ENSGT00940000153110.D	ENSGT00940000158715	ENSGT00940000160943	ENSGT00510000046406.f.b.a.a.d	ENSGT00510000046406.f.b.a.a.c	ENSGT00510000046406.f.b.a.b	ENSGT00940000157468.a.b	ENSGT00940000153876.B	ENSGT00390000003682	ENSGT00910000144226	ENSGT00530000063869.B	ENSGT00950000183174.A ##22	ENSGT00390000018566	ENSGT00390000003209	ENSGT00940000161891	ENSGT00940000154089.b	ENSGT00940000164542	ENSGT00940000156240	ENSGT00940000161620	ENSGT00940000164635	ENSGT00500000044909	ENSGT00940000156812	ENSGT00950000183191.b	ENSGT00940000162791	ENSGT00940000160241	ENSGT00940000155578	ENSGT00940000153116.B
Laurasiatheria_b	ANCESTRAL SPECIES	13	ENSGT00730000111354	ENSGT00390000013005	ENSGT00550000075100	ENSGT00940000153110.D	ENSGT00940000158715	ENSGT00940000160943	ENSGT00510000046406.f.b.a.a.d	ENSGT00510000046406.f.b.a.a.c	ENSGT00510000046406.f.b.a.b	ENSGT00940000157468.a.b	ENSGT01100000265499	ENSGT00940000153876.B	ENSGT00390000003682	ENSGT00910000144226	ENSGT00530000063869.B	ENSGT00950000183174.A ##22	ENSGT00390000018566	ENSGT00390000003209	ENSGT00940000161891	ENSGT00940000154089.b	ENSGT00940000156240	ENSGT00940000161620	ENSGT00500000044909	ENSGT00940000156812	ENSGT00950000183191.b	ENSGT00940000162791	ENSGT00940000160241	ENSGT00940000155578	ENSGT00940000153116.B	ENSGT00940000153472.a.a	ENSGT00940000159403
Laurasiatheria_c	ANCESTRAL SPECIES	21	ENSGT00730000111354	ENSGT00390000013005	ENSGT00550000075100	ENSGT00940000153110.D	ENSGT00940000158715	ENSGT00940000160943	ENSGT00510000046406.f.b.a.a.d	ENSGT00510000046406.f.b.a.a.c	ENSGT00510000046406.f.b.a.b	ENSGT00940000157468.a.b	ENSGT01100000265499	ENSGT00940000153876.B	ENSGT00390000003682	ENSGT00910000144226	ENSGT00530000063869.B	ENSGT00950000183174.A ##22	ENSGT00390000018566	ENSGT00390000003209	ENSGT00940000161891	ENSGT00940000154089.b	ENSGT00940000156240	ENSGT00940000161620	ENSGT00500000044909	ENSGT00940000156812	ENSGT00950000183191.b	ENSGT00940000162791	ENSGT00940000160241	ENSGT00940000155578	ENSGT00940000153116.B	ENSGT00940000153472.a.a	ENSGT00940000159403
Chiroptera	ANCESTRAL SPECIES	18	ENSGT00940000158958	ENSGT00730000111354	ENSGT00390000013005	ENSGT00550000075100	ENSGT00940000153110.D	ENSGT00940000158715	ENSGT00940000160943	ENSGT00510000046406.f.b.a.a.d	ENSGT00510000046406.f.b.a.a.c	ENSGT00510000046406.f.b.a.b	ENSGT00940000157468.a.b	ENSGT00940000153876.B	ENSGT00390000003682	ENSGT00910000144226	ENSGT00530000063869.B	ENSGT00950000183174.A ##22	ENSGT00390000018566	ENSGT00390000003209	ENSGT00940000161891	ENSGT00940000154089.b	ENSGT00940000156240	ENSGT00940000164635	ENSGT00940000161620	ENSGT00500000044909	ENSGT00940000156812	ENSGT00950000183191.b	ENSGT00940000162791	ENSGT00940000160241	ENSGT00940000155578	ENSGT00940000153116.B	ENSGT00940000153472.a.a
Microchiroptera	ANCESTRAL SPECIES	9	ENSGT00940000157433	ENSGT00940000158958	ENSGT00730000111354	ENSGT00390000013005	ENSGT00550000075100	ENSGT00940000153110.D	ENSGT00940000158715	ENSGT00940000160943	ENSGT00510000046406.f.b.a.a.d	ENSGT00510000046406.f.b.a.a.c	ENSGT00510000046406.f.b.a.b	ENSGT00940000157468.a.b	ENSGT00940000153876.B	ENSGT00910000144226	ENSGT00530000063869.B	ENSGT00950000183174.A ##22	ENSGT00390000018566	ENSGT00390000003209	ENSGT00940000161891	ENSGT00940000154089.b	ENSGT00940000156240	ENSGT00940000161620	ENSGT00500000044909	ENSGT00940000156812	ENSGT00950000183191.b	ENSGT00940000162791	ENSGT00940000160241	ENSGT00940000155578	ENSGT00940000153116.B	ENSGT00940000153472.a.a	ENSGT00940000159403
Greater horseshoe bat	MODERN SPECIES	17	IQCD (ENSRFEG00010011054)	RITA1 (ENSRFEG00010010954)	DDX54 (ENSRFEG00010010884)	CFAP73 (ENSRFEG00010010780)	RASAL1 (ENSRFEG00010010720)	DTX1 (ENSRFEG00010010649)	OAS2 (ENSRFEG00010010584)	OAS3 (ENSRFEG00010010474)	OAS1 (ENSRFEG00010010375)	RPH3A (ENSRFEG00010010235)	PTPN11 (ENSRFEG00010010117)	ENSRFEG00010010084	ENSRFEG00010010065	HECTD4 (ENSRFEG00010009907)	TRAFD1 (ENSRFEG00010009818)	NAA25 (ENSRFEG00010009728) ##22	ERP29 (ENSRFEG00010009682)	TMEM116 (ENSRFEG00010009529)	ENSRFEG00010009493	ENSRFEG00010009474	ENSRFEG00010009455	MAPKAPK5 (ENSRFEG00010009387)	ALDH2 (ENSRFEG00010009325)	ACAD10 (ENSRFEG00010009273)	BRAP (ENSRFEG00010009159)	ATXN2 (ENSRFEG00010008747)	SH2B3 (ENSRFEG00010008679)	CUX2 (ENSRFEG00010008569)	MYL2 (ENSRFEG00010008439)	CCDC63 (ENSRFEG00010008300)	PPP1CC (ENSRFEG00010008221)
Microbat	MODERN SPECIES	1193									ENSMLUG00000015795	OAS3 (ENSMLUG00000015773)	ENSMLUG00000015764	RPH3A (ENSMLUG00000015750)	PTPN11 (ENSMLUG00000006826)	HECTD4 (ENSMLUG00000008345)	TRAFD1 (ENSMLUG00000008314)	NAA25 (ENSMLUG00000008262) ##22	ERP29 (ENSMLUG00000028411)	TMEM116 (ENSMLUG00000008234)	ENSMLUG00000026610	ENSMLUG00000022577	ENSMLUG00000023542	ENSMLUG00000015814	ALDH2 (ENSMLUG00000017084)	ACAD10 (ENSMLUG00000017078)	BRAP (ENSMLUG00000017071)	ATXN2 (ENSMLUG00000015559)	SH2B3 (ENSMLUG00000015551)	PHETA1 (ENSMLUG00000003375)	CUX2 (ENSMLUG00000003239)	MYL2 (ENSMLUG00000010687)	CCDC63 (ENSMLUG00000010675)
Megabat	MODERN SPECIES	3136												PTPN11 (ENSPVAG00000012410)	RPL6 (ENSPVAG00000012409)	HECTD4 (ENSPVAG00000012407)	TRAFD1 (ENSPVAG00000012404)	NAA25 (ENSPVAG00000012402) ##22	ERP29 (ENSPVAG00000012400)	TMEM116 (ENSPVAG00000012397)
Equus	ANCESTRAL SPECIES	38	ENSGT00730000111354	ENSGT00390000013005	ENSGT00550000075100	ENSGT00940000153110.D	ENSGT00940000158715	ENSGT00940000160943	ENSGT00510000046406.f.b.a.a.d	ENSGT00510000046406.f.b.a.a.c	ENSGT00510000046406.f.b.a.b	ENSGT00940000157468.a.b	ENSGT01100000265499	ENSGT00940000153876.B	ENSGT00390000003682	ENSGT00910000144226	ENSGT00530000063869.B	ENSGT00950000183174.A ##22	ENSGT00390000018566	ENSGT00390000003209	ENSGT00940000161891.u	ENSGT00940000161891.v	ENSGT00940000164542	ENSGT00940000154089.b	ENSGT00940000156240	ENSGT00940000161620	ENSGT00500000044909	ENSGT00940000156812	ENSGT00950000183191.b	ENSGT00940000162791	ENSGT00940000160241	ENSGT00940000155578	ENSGT00940000153116.B
Horse	MODERN SPECIES	29	RITA1 (ENSECAG00000011558)	DDX54 (ENSECAG00000012890)	CFAP73 (ENSECAG00000009526)	RASAL1 (ENSECAG00000009544)	DTX1 (ENSECAG00000028399)	OAS2 (ENSECAG00000014422)	OAS3 (ENSECAG00000008809)	OAS1 (ENSECAG00000013435)	ENSECAG00000032475	RPH3A (ENSECAG00000013526)	PTPN11 (ENSECAG00000024560)	ENSECAG00000017514	HECTD4 (ENSECAG00000023602)	ENSECAG00000046144	TRAFD1 (ENSECAG00000021107)	NAA25 (ENSECAG00000008754) ##22	ERP29 (ENSECAG00000000384)	TMEM116 (ENSECAG00000008110)	ENSECAG00000057765	ENSECAG00000035064	ENSECAG00000001300	MAPKAPK5 (ENSECAG00000010001)	ALDH2 (ENSECAG00000017673)	ACAD10 (ENSECAG00000013793)	BRAP (ENSECAG00000007549)	ATXN2 (ENSECAG00000014347)	SH2B3 (ENSECAG00000007021)	PHETA1 (ENSECAG00000030416)	CUX2 (ENSECAG00000007841)	MYL2 (ENSECAG00000007867)	CCDC63 (ENSECAG00000016878)
Donkey	MODERN SPECIES	28	RITA1 (ENSEASG00005034493)	DDX54 (ENSEASG00005009501)	CFAP73 (ENSEASG00005009509)	RASAL1 (ENSEASG00005009510)	DTX1 (ENSEASG00005009513)	OAS2 (ENSEASG00005009515)	OAS3 (ENSEASG00005009518)	ENSEASG00005025232	ENSEASG00005009520	RPH3A (ENSEASG00005009544)	ENSEASG00005009608	PTPN11 (ENSEASG00005009609)	RPL6 (ENSEASG00005009610)	HECTD4 (ENSEASG00005009689)	TRAFD1 (ENSEASG00005009914)	NAA25 (ENSEASG00005009947) ##22	ERP29 (ENSEASG00005035690)	TMEM116 (ENSEASG00005010566)	ENSEASG00005024548	ENSEASG00005030305	MAPKAPK5 (ENSEASG00005010580)	ALDH2 (ENSEASG00005010671)	ACAD10 (ENSEASG00005011198)	BRAP (ENSEASG00005011898)	ATXN2 (ENSEASG00005012077)	SH2B3 (ENSEASG00005030334)	PHETA1 (ENSEASG00005038245)	CUX2 (ENSEASG00005012173)	ENSEASG00005012185	CCDC63 (ENSEASG00005012196)	PPP1CC (ENSEASG00005012198)
Carnivora	ANCESTRAL SPECIES	13	ENSGT00730000111354	ENSGT00390000013005	ENSGT00550000075100	ENSGT00940000153110.D	ENSGT00940000158715	ENSGT00940000160943	ENSGT00510000046406.f.b.a.a.d	ENSGT00510000046406.f.b.a.a.c	ENSGT00510000046406.f.b.a.b	ENSGT00940000157468.a.b	ENSGT01100000265499	ENSGT00940000153876.B	ENSGT00390000003682	ENSGT00910000144226	ENSGT00530000063869.B	ENSGT00950000183174.A ##22	ENSGT00390000018566	ENSGT00390000003209	ENSGT00940000161891	ENSGT00940000154089.b	ENSGT00940000156240	ENSGT00940000164635	ENSGT00500000044909	ENSGT00940000156812	ENSGT00950000183191.b	ENSGT00940000162791	ENSGT00940000160241	ENSGT00940000155578	ENSGT00940000153116.B	ENSGT00940000153472.a.a	ENSGT00940000159403
Felidae	ANCESTRAL SPECIES	20	ENSGT00940000158958	ENSGT00730000111354	ENSGT00390000013005	ENSGT00550000075100	ENSGT00940000153110.D	ENSGT00940000158715	ENSGT00940000160943	ENSGT00510000046406.f.b.a.a.d	ENSGT00510000046406.f.b.a.a.c	ENSGT00510000046406.f.b.a.b	ENSGT00940000157468.a.b	ENSGT00940000153876.B	ENSGT00390000003682	ENSGT00910000144226	ENSGT00530000063869.B	ENSGT00950000183174.A ##22	ENSGT00390000018566	ENSGT00390000003209	ENSGT00940000161891.p	ENSGT00940000161891.o	ENSGT00940000154089.b	ENSGT00940000156240	ENSGT00940000164635	ENSGT00500000044909	ENSGT00940000156812	ENSGT00950000183191.b	ENSGT00940000162791	ENSGT00940000160241	ENSGT00940000155578	ENSGT00940000153116.B	ENSGT00940000153472.a.a
Panthera	ANCESTRAL SPECIES	28	ENSGT00940000158958	ENSGT00730000111354	ENSGT00390000013005	ENSGT00550000075100	ENSGT00940000153110.D	ENSGT00940000158715	ENSGT00940000160943	ENSGT00510000046406.f.b.a.a.d	ENSGT00510000046406.f.b.a.a.c	ENSGT00510000046406.f.b.a.b	ENSGT00940000157468.a.b	ENSGT00940000153876.B	ENSGT00390000003682.s.b	ENSGT00910000144226	ENSGT00530000063869.B	ENSGT00950000183174.A ##22	ENSGT00390000018566	ENSGT00390000003209	ENSGT00940000161891.p	ENSGT00940000161891.o	ENSGT00940000154089.b	ENSGT00940000156240	ENSGT00940000164635	ENSGT00500000044909	ENSGT00940000156812	ENSGT00950000183191.b	ENSGT00940000162791	ENSGT00940000160241	ENSGT00940000155578	ENSGT00940000153116.B	ENSGT00940000153472.a.a
Tiger	MODERN SPECIES	131	TPCN1 (ENSPTIG00000021734)	IQCD (ENSPTIG00000021550)	RITA1 (ENSPTIG00000021419)	DDX54 (ENSPTIG00000019728)	RASAL1 (ENSPTIG00000016271)	DTX1 (ENSPTIG00000015944)	OAS2 (ENSPTIG00000013464)	OAS3 (ENSPTIG00000011938)	ENSPTIG00000011439	ENSPTIG00000010762	PTPN11 (ENSPTIG00000009120)	ENSPTIG00000007602	ENSPTIG00000005457	HECTD4 (ENSPTIG00000021435)	TRAFD1 (ENSPTIG00000021302)	NAA25 (ENSPTIG00000020640) ##22	ERP29 (ENSPTIG00000020381)	TMEM116 (ENSPTIG00000017940)	ENSPTIG00000017204	MAPKAPK5 (ENSPTIG00000015622)	ALDH2 (ENSPTIG00000013936)	ENSPTIG00000011755	BRAP (ENSPTIG00000010040)	ENSPTIG00000005212	ATXN2 (ENSPTIG00000021122)	SH2B3 (ENSPTIG00000020682)	CUX2 (ENSPTIG00000019695)	MYL2 (ENSPTIG00000018744)	CCDC63 (ENSPTIG00000016858)	PPP1CC (ENSPTIG00000014727)	HVCN1 (ENSPTIG00000013901)
Panthera_a	ANCESTRAL SPECIES	30	ENSGT00940000158958	ENSGT00730000111354	ENSGT00390000013005	ENSGT00550000075100	ENSGT00940000153110.D	ENSGT00940000158715	ENSGT00940000160943	ENSGT00510000046406.f.b.a.a.d	ENSGT00510000046406.f.b.a.a.c	ENSGT00510000046406.f.b.a.b	ENSGT00940000157468.a.b	ENSGT00940000153876.B	ENSGT00390000003682.s.b.b	ENSGT00910000144226	ENSGT00530000063869.B	ENSGT00950000183174.A ##22	ENSGT00390000018566	ENSGT00390000003209	ENSGT00940000161891.p	ENSGT00940000161891.o	ENSGT00940000154089.b	ENSGT00940000156240	ENSGT00940000164635	ENSGT00500000044909	ENSGT00390000003682.s.b.a	ENSGT00940000156812	ENSGT00950000183191.b	ENSGT00940000162791	ENSGT00940000160241	ENSGT00940000155578	ENSGT00940000153116.B
lion	MODERN SPECIES	12	TPCN1 (ENSPLOG00000014719)	IQCD (ENSPLOG00000014801)	RITA1 (ENSPLOG00000014880)	DDX54 (ENSPLOG00000014959)	CFAP73 (ENSPLOG00000015047)	RASAL1 (ENSPLOG00000015153)	DTX1 (ENSPLOG00000015380)	OAS2 (ENSPLOG00000015485)	OAS3 (ENSPLOG00000015625)	OAS1 (ENSPLOG00000016022)	RPH3A (ENSPLOG00000017363)	PTPN11 (ENSPLOG00000005361)	ENSPLOG00000005428	HECTD4 (ENSPLOG00000005587)	TRAFD1 (ENSPLOG00000005880)	NAA25 (ENSPLOG00000005947) ##22	ERP29 (ENSPLOG00000006050)	TMEM116 (ENSPLOG00000006128)	ENSPLOG00000006250	MAPKAPK5 (ENSPLOG00000006274)	ALDH2 (ENSPLOG00000006361)	ENSPLOG00000006424	BRAP (ENSPLOG00000006473)	ATXN2 (ENSPLOG00000006686)	ENSPLOG00000007041	SH2B3 (ENSPLOG00000007058)	PHETA1 (ENSPLOG00000007087)	CUX2 (ENSPLOG00000007157)	MYL2 (ENSPLOG00000007332)	CCDC63 (ENSPLOG00000007400)	PPP1CC (ENSPLOG00000007499)
leopard	MODERN SPECIES	50	TPCN1 (ENSPPRG00000012227)	IQCD (ENSPPRG00000006777)	RITA1 (ENSPPRG00000006056)	DDX54 (ENSPPRG00000005223)	CFAP73 (ENSPPRG00000000949)	RASAL1 (ENSPPRG00000022770)	DTX1 (ENSPPRG00000013704)	OAS2 (ENSPPRG00000012740)	OAS3 (ENSPPRG00000011430)	OAS1 (ENSPPRG00000009508)	RPH3A (ENSPPRG00000008089)	PTPN11 (ENSPPRG00000003977)	ENSPPRG00000002958	HECTD4 (ENSPPRG00000002101)	TRAFD1 (ENSPPRG00000012649)	NAA25 (ENSPPRG00000011674) ##22	ENSPPRG00000011125	TMEM116 (ENSPPRG00000010447)	ENSPPRG00000009326	ENSPPRG00000008372	MAPKAPK5 (ENSPPRG00000007692)	ALDH2 (ENSPPRG00000006814)	ENSPPRG00000005272	BRAP (ENSPPRG00000004084)	ATXN2 (ENSPPRG00000003573)	ENSPPRG00000013754	SH2B3 (ENSPPRG00000012909)	PHETA1 (ENSPPRG00000017948)	CUX2 (ENSPPRG00000011831)	MYL2 (ENSPPRG00000009106)	CCDC63 (ENSPPRG00000008588)
Cat	MODERN SPECIES	243	SLC8B1 (ENSFCAG00000000333)	IQCD (ENSFCAG00000000330)	TPCN1 (ENSFCAG00000032345)	DDX54 (ENSFCAG00000027806)	CFAP73 (ENSFCAG00000023634)	RASAL1 (ENSFCAG00000000323)	DTX1 (ENSFCAG00000022073)	OAS2 (ENSFCAG00000000322)	OAS3 (ENSFCAG00000000320)	OAS1 (ENSFCAG00000000318)	RPH3A (ENSFCAG00000015426)	PTPN11 (ENSFCAG00000009695)	RPL6 (ENSFCAG00000006858)	HECTD4 (ENSFCAG00000023528)	TRAFD1 (ENSFCAG00000002998)	NAA25 (ENSFCAG00000003884) ##22	ERP29 (ENSFCAG00000031239)	ENSFCAG00000043552	ENSFCAG00000046914	TMEM116 (ENSFCAG00000030742)	MAPKAPK5 (ENSFCAG00000025333)	ALDH2 (ENSFCAG00000022000)	ENSFCAG00000035528	BRAP (ENSFCAG00000000621)	ATXN2 (ENSFCAG00000003178)	SH2B3 (ENSFCAG00000003177)	PHETA1 (ENSFCAG00000041440)	CUX2 (ENSFCAG00000003176)	MYL2 (ENSFCAG00000011170)	CCDC63 (ENSFCAG00000011169)	PPP1CC (ENSFCAG00000011168)
Caniformia	ANCESTRAL SPECIES	9	ENSGT00730000111354	ENSGT00390000013005	ENSGT00550000075100	ENSGT00940000153110.D	ENSGT00940000158715	ENSGT00940000160943	ENSGT00510000046406.f.b.a.a.d	ENSGT00510000046406.f.b.a.a.c	ENSGT00510000046406.f.b.a.b	ENSGT00940000157468.a.b	ENSGT01100000265499	ENSGT00940000153876.B	ENSGT00390000003682	ENSGT00910000144226	ENSGT00530000063869.B	ENSGT00950000183174.A ##22	ENSGT00390000018566	ENSGT00390000003209	ENSGT00940000161891.n	ENSGT00940000161891.m	ENSGT00940000154089.b	ENSGT00940000156240	ENSGT00940000164635	ENSGT00500000044909	ENSGT00940000156812	ENSGT00950000183191.b	ENSGT00940000162791	ENSGT00940000160241	ENSGT00940000155578	ENSGT00940000153116.B	ENSGT00940000153472.a.a
Canidae	ANCESTRAL SPECIES	23	ENSGT00940000158958	ENSGT00730000111354	ENSGT00390000013005	ENSGT00550000075100	ENSGT00940000153110.D	ENSGT00940000158715	ENSGT00940000160943	ENSGT00510000046406.f.b.a.a.d	ENSGT00510000046406.f.b.a.a.c	ENSGT00510000046406.f.b.a.b	ENSGT00940000157468.a.b	ENSGT00940000153876.B	ENSGT00390000003682	ENSGT00910000144226	ENSGT00530000063869.B	ENSGT00950000183174.A ##22	ENSGT00390000018566	ENSGT00390000003209	ENSGT00940000161891.n	ENSGT00940000161891.m	ENSGT00940000154089.b	ENSGT00940000156240	ENSGT00940000164635	ENSGT00500000044909	ENSGT00940000156812	ENSGT00950000183191.b	ENSGT00940000162791	ENSGT00940000160241	ENSGT00940000155578	ENSGT00940000153116.B	ENSGT00940000153472.a.a
Canis_lupus	ANCESTRAL SPECIES	25	ENSGT00940000158958	ENSGT00730000111354	ENSGT00390000013005	ENSGT00550000075100	ENSGT00940000153110.D	ENSGT00940000158715	ENSGT00940000160943	ENSGT00510000046406.f.b.a.a.d	ENSGT00510000046406.f.b.a.a.c	ENSGT00510000046406.f.b.a.b	ENSGT00940000157468.a.b	ENSGT00940000153876.B	ENSGT00390000003682.u.a	ENSGT00910000144226	ENSGT00530000063869.B	ENSGT00950000183174.A ##22	ENSGT00390000018566	ENSGT00390000003209	ENSGT00940000161891.n	ENSGT00940000161891.m	ENSGT00940000154089.b	ENSGT00940000156240.e	ENSGT00940000164635	ENSGT00500000044909	ENSGT00940000156812	ENSGT00950000183191.b	ENSGT00940000162791	ENSGT00940000160241	ENSGT00940000155578	ENSGT00940000159403	ENSGT00570000079101.a.b
Dingo	MODERN SPECIES	108	RITA1 (ENSCAFG00020017645)	DDX54 (ENSCAFG00020017643)	CFAP73 (ENSCAFG00020017641)	RASAL1 (ENSCAFG00020017636)	DTX1 (ENSCAFG00020017631)	OAS2 (ENSCAFG00020017625)	OAS3 (ENSCAFG00020017605)	OAS1 (ENSCAFG00020017601)	RPH3A (ENSCAFG00020017582)	ENSCAFG00020017577	PTPN11 (ENSCAFG00020017568)	ENSCAFG00020017565	ENSCAFG00020017564	HECTD4 (ENSCAFG00020017494)	TRAFD1 (ENSCAFG00020017483)	NAA25 (ENSCAFG00020017088) ##22	ERP29 (ENSCAFG00020017075)	TMEM116 (ENSCAFG00020017063)	ENSCAFG00020017060	ENSCAFG00020017059	ENSCAFG00020017057	MAPKAPK5 (ENSCAFG00020017054)	ENSCAFG00020017050	ENSCAFG00020017044	BRAP (ENSCAFG00020017043)	ATXN2 (ENSCAFG00020017041)	SH2B3 (ENSCAFG00020017039)	PHETA1 (ENSCAFG00020017036)	CUX2 (ENSCAFG00020017026)	MYL2 (ENSCAFG00020017003)	CCDC63 (ENSCAFG00020016994)
Dog	MODERN SPECIES	18	IQCD (ENSCAFG00845023086)	RITA1 (ENSCAFG00845023030)	DDX54 (ENSCAFG00845022665)	CFAP73 (ENSCAFG00845022575)	RASAL1 (ENSCAFG00845022464)	DTX1 (ENSCAFG00845022372)	OAS2 (ENSCAFG00845022313)	OAS3 (ENSCAFG00845022113)	OAS1 (ENSCAFG00845021979)	RPH3A (ENSCAFG00845021672)	PTPN11 (ENSCAFG00845021271)	RPL6 (ENSCAFG00845021097)	ENSCAFG00845021065	HECTD4 (ENSCAFG00845020525)	TRAFD1 (ENSCAFG00845020346)	NAA25 (ENSCAFG00845020064) ##22	ERP29 (ENSCAFG00845019920)	ENSCAFG00845019889	ENSCAFG00845019874	TMEM116 (ENSCAFG00845019763)	MAPKAPK5 (ENSCAFG00845019639)	ENSCAFG00845019268	ENSCAFG00845018991	BRAP (ENSCAFG00845030089)	ATXN2 (ENSCAFG00845029435)	SH2B3 (ENSCAFG00845029052)	PHETA1 (ENSCAFG00845029033)	CUX2 (ENSCAFG00845028974)	CCDC63 (ENSCAFG00845028915)	PPP1CC (ENSCAFG00845028748)	MYL2 (ENSCAFG00845028634)
Red fox	MODERN SPECIES	158	IQCD (ENSVVUG00000010207)	RITA1 (ENSVVUG00000010210)	DDX54 (ENSVVUG00000010212)	CFAP73 (ENSVVUG00000010231)	RASAL1 (ENSVVUG00000010257)	DTX1 (ENSVVUG00000010313)	OAS2 (ENSVVUG00000010321)	OAS3 (ENSVVUG00000010348)	OAS1 (ENSVVUG00000010357)	RPH3A (ENSVVUG00000010363)	ENSVVUG00000010391	ENSVVUG00000010399	HECTD4 (ENSVVUG00000010459)	ENSVVUG00000012458	TRAFD1 (ENSVVUG00000012462)	NAA25 (ENSVVUG00000012553) ##22	ERP29 (ENSVVUG00000013075)	TMEM116 (ENSVVUG00000013081)	ENSVVUG00000013109	ENSVVUG00000013120	MAPKAPK5 (ENSVVUG00000013166)	ALDH2 (ENSVVUG00000014130)	ACAD10 (ENSVVUG00000015271)	BRAP (ENSVVUG00000015293)	ATXN2 (ENSVVUG00000016107)	SH2B3 (ENSVVUG00000016126)	PHETA1 (ENSVVUG00000016133)	CUX2 (ENSVVUG00000016142)	ENSVVUG00000016178	CCDC63 (ENSVVUG00000016229)	PPP1CC (ENSVVUG00000016232)
Caniformia_b	ANCESTRAL SPECIES	29	ENSGT00730000111354	ENSGT00390000013005	ENSGT00550000075100	ENSGT00940000153110.D	ENSGT00940000158715	ENSGT00940000160943	ENSGT00510000046406.f.b.a.a.d	ENSGT00510000046406.f.b.a.a.c	ENSGT00510000046406.f.b.a.b	ENSGT00940000157468.a.b	ENSGT01100000265499	ENSGT00940000153876.B	ENSGT00390000003682	ENSGT00910000144226	ENSGT00530000063869.B	ENSGT00950000183174.A ##22	ENSGT00390000018566	ENSGT00390000003209	ENSGT00940000161891.n	ENSGT00940000161891.m	ENSGT00940000154089.b	ENSGT00940000156240	ENSGT00940000164635	ENSGT00500000044909	ENSGT00940000156812	ENSGT00950000183191.b	ENSGT00940000162791	ENSGT00940000160241	ENSGT00940000155578	ENSGT00940000153116.B	ENSGT00940000153472.a.a
Mustelinae	ANCESTRAL SPECIES	34	ENSGT00940000158958	ENSGT00730000111354	ENSGT00390000013005	ENSGT00550000075100	ENSGT00940000153110.D	ENSGT00940000158715	ENSGT00940000160943	ENSGT00510000046406.f.b.a.a.d	ENSGT00510000046406.f.b.a.a.c	ENSGT00510000046406.f.b.a.b	ENSGT00940000157468.a.b	ENSGT00940000153876.B	ENSGT00390000003682.z.a	ENSGT00910000144226	ENSGT00530000063869.B	ENSGT00950000183174.A ##22	ENSGT00390000018566	ENSGT00390000003209	ENSGT00940000161891.n	ENSGT00940000161891.m	ENSGT00940000154089.b	ENSGT00940000156240	ENSGT00940000164635	ENSGT00500000044909	ENSGT00940000156812	ENSGT00950000183191.b	ENSGT00940000160241	ENSGT00940000155578	ENSGT00940000153116.B	ENSGT00940000153472.a.a	ENSGT00940000159403
American mink	MODERN SPECIES	69	TPCN1 (ENSNVIG00000015004)	IQCD (ENSNVIG00000015182)	RITA1 (ENSNVIG00000015210)	DDX54 (ENSNVIG00000015225)	CFAP73 (ENSNVIG00000015300)	RASAL1 (ENSNVIG00000015317)	DTX1 (ENSNVIG00000015371)	OAS2 (ENSNVIG00000015389)	OAS3 (ENSNVIG00000015413)	OAS1 (ENSNVIG00000015462)	RPH3A (ENSNVIG00000015504)	PTPN11 (ENSNVIG00000015711)	ENSNVIG00000015915	HECTD4 (ENSNVIG00000015948)	ENSNVIG00000016171	NAA25 (ENSNVIG00000016183) ##22	ERP29 (ENSNVIG00000016226)	TMEM116 (ENSNVIG00000016245)	ENSNVIG00000016400	MAPKAPK5 (ENSNVIG00000016419)	ALDH2 (ENSNVIG00000016470)	ENSNVIG00000016486	BRAP (ENSNVIG00000016528)	ATXN2 (ENSNVIG00000016551)	SH2B3 (ENSNVIG00000016721)	CUX2 (ENSNVIG00000016757)	MYL2 (ENSNVIG00000016845)	CCDC63 (ENSNVIG00000016889)	PPP1CC (ENSNVIG00000016945)	HVCN1 (ENSNVIG00000016979)	ENSNVIG00000017018
Ferret	MODERN SPECIES	200	IQCD (ENSMPUG00000002587)	RITA1 (ENSMPUG00000002581)	DDX54 (ENSMPUG00000002574)	ENSMPUG00000002569	RASAL1 (ENSMPUG00000002562)	DTX1 (ENSMPUG00000002559)	ENSMPUG00000002558	OAS2 (ENSMPUG00000002550)	OAS3 (ENSMPUG00000002547)	OAS1 (ENSMPUG00000002543)	RPH3A (ENSMPUG00000002537)	PTPN11 (ENSMPUG00000002533)	ENSMPUG00000002526	HECTD4 (ENSMPUG00000002406)	TRAFD1 (ENSMPUG00000002402)	NAA25 (ENSMPUG00000002328) ##22	ERP29 (ENSMPUG00000002326)	TMEM116 (ENSMPUG00000002316)	ENSMPUG00000019402	ENSMPUG00000019400	ENSMPUG00000019399	MAPKAPK5 (ENSMPUG00000002284)	ALDH2 (ENSMPUG00000002282)	ENSMPUG00000002277	BRAP (ENSMPUG00000002274)	ATXN2 (ENSMPUG00000002212)	ENSMPUG00000002210	ENSMPUG00000002209	CUX2 (ENSMPUG00000002207)	MYL2 (ENSMPUG00000002205)	CCDC63 (ENSMPUG00000002190)
Ursidae	ANCESTRAL SPECIES	34	ENSGT00730000111354	ENSGT00390000013005	ENSGT00550000075100	ENSGT00940000153110.D	ENSGT00940000158715	ENSGT00940000160943	ENSGT00510000046406.f.b.a.a.d	ENSGT00510000046406.f.b.a.a.c	ENSGT00510000046406.f.b.a.b	ENSGT00940000157468.a.b	ENSGT01100000265499	ENSGT00940000153876.B	ENSGT00390000003682	ENSGT00910000144226	ENSGT00530000063869.B	ENSGT00950000183174.A ##22	ENSGT00390000018566	ENSGT00940000154268.e.a.jb.a	ENSGT00390000003209	ENSGT00940000161891.n	ENSGT00940000161891.m	ENSGT00940000154089.b	ENSGT00940000156240	ENSGT00940000164635	ENSGT00500000044909	ENSGT00940000156812	ENSGT00950000183191.b	ENSGT00940000162791	ENSGT00940000160241	ENSGT00940000155578	ENSGT00940000153116.B
Giant Panda	MODERN SPECIES	3	IQCD (ENSAMEG00000008760)	RITA1 (ENSAMEG00000008770)	DDX54 (ENSAMEG00000008775)	CFAP73 (ENSAMEG00000008813)	RASAL1 (ENSAMEG00000008818)	DTX1 (ENSAMEG00000008870)	OAS2 (ENSAMEG00000008674)	ENSAMEG00000024758	ENSAMEG00000026721	OAS1 (ENSAMEG00000008654)	RPH3A (ENSAMEG00000008603)	PTPN11 (ENSAMEG00000008525)	RPL6 (ENSAMEG00000008510)	HECTD4 (ENSAMEG00000008442)	TRAFD1 (ENSAMEG00000008421)	NAA25 (ENSAMEG00000008360) ##22	ERP29 (ENSAMEG00000008356)	ENSAMEG00000028635	TMEM116 (ENSAMEG00000004674)	ENSAMEG00000019590	MAPKAPK5 (ENSAMEG00000013638)	ALDH2 (ENSAMEG00000013664)	BRAP (ENSAMEG00000013719)	ENSAMEG00000013696	ATXN2 (ENSAMEG00000013747)	SH2B3 (ENSAMEG00000013785)	PHETA1 (ENSAMEG00000028369)	CUX2 (ENSAMEG00000013799)	MYL2 (ENSAMEG00000013825)	CCDC63 (ENSAMEG00000013845)	PPP1CC (ENSAMEG00000013861)
Ursus	ANCESTRAL SPECIES	38	ENSGT00730000111354	ENSGT00390000013005	ENSGT00550000075100	ENSGT00940000153110.D	ENSGT00940000158715	ENSGT00940000160943	ENSGT00510000046406.f.b.a.a.d	ENSGT00510000046406.f.b.a.a.c	ENSGT00510000046406.f.b.a.b	ENSGT00940000157468.a.b	ENSGT01100000265499	ENSGT00940000153876.B	ENSGT00390000003682	ENSGT00910000144226	ENSGT00530000063869.B	ENSGT00950000183174.A ##22	ENSGT00390000018566	ENSGT00940000154268.e.a.jb.a	ENSGT00390000003209	ENSGT00940000161891.n	ENSGT00940000161891.m	ENSGT00940000154089.b	ENSGT00940000156240	ENSGT00940000164635	ENSGT00500000044909.g	ENSGT00940000156812	ENSGT00950000183191.b	ENSGT00940000162791	ENSGT00940000160241	ENSGT00940000155578	ENSGT00940000153116.B
Polar bear	MODERN SPECIES	153	IQCD (ENSUMAG00000010651)	RITA1 (ENSUMAG00000010648)	DDX54 (ENSUMAG00000010245)	CFAP73 (ENSUMAG00000010182)	RASAL1 (ENSUMAG00000010173)	ENSUMAG00000010156	OAS2 (ENSUMAG00000010148)	OAS3 (ENSUMAG00000009998)	OAS1 (ENSUMAG00000009975)	RPH3A (ENSUMAG00000009947)	ENSUMAG00000009936	PTPN11 (ENSUMAG00000009833)	RPL6 (ENSUMAG00000009812)	HECTD4 (ENSUMAG00000009100)	TRAFD1 (ENSUMAG00000009035)	NAA25 (ENSUMAG00000008494) ##22	ERP29 (ENSUMAG00000008426)	ENSUMAG00000008425	ENSUMAG00000008418	TMEM116 (ENSUMAG00000008407)	ENSUMAG00000008399	ENSUMAG00000008395	MAPKAPK5 (ENSUMAG00000008383)	ALDH2 (ENSUMAG00000007438)	ENSUMAG00000007336	BRAP (ENSUMAG00000007332)	ATXN2 (ENSUMAG00000007315)	SH2B3 (ENSUMAG00000007306)	CUX2 (ENSUMAG00000007274)	MYL2 (ENSUMAG00000007233)	CCDC63 (ENSUMAG00000007214)
American black bear	DUPLICATION
American black bear	MODERN SPECIES	258											ENSUAMG00000008480	PTPN11 (ENSUAMG00000008479)	RPL6 (ENSUAMG00000008477)	HECTD4 (ENSUAMG00000008470)	TRAFD1 (ENSUAMG00000008464)	ENSUAMG00000008462 ##22
American black bear	MODERN SPECIES	259																NAA25 (ENSUAMG00000008491) ##22	ERP29 (ENSUAMG00000009296)
Artiodactyla	ANCESTRAL SPECIES	26									ENSGT00510000046406.f.b.a.a.d	ENSGT00510000046406.f.b.a.b	ENSGT00940000157468.a.b	ENSGT00940000153876.B	ENSGT00390000003682	ENSGT00910000144226	ENSGT00530000063869.B	ENSGT00950000183174.A ##22	ENSGT00390000018566	ENSGT00390000003209	ENSGT00940000161891.k	ENSGT00940000161891.l	ENSGT00940000154089.b	ENSGT00940000156240	ENSGT00940000161620	ENSGT00940000164635	ENSGT00500000044909	ENSGT00940000156812	ENSGT00950000183191.b	ENSGT00940000162791	ENSGT00940000160241	ENSGT00940000155578	ENSGT00940000153116.B
Suina	ANCESTRAL SPECIES	20	ENSGT00940000160943	ENSGT00940000158715	ENSGT00940000153110.D	ENSGT00550000075100	ENSGT00390000013005	ENSGT00730000111354	ENSGT00940000158958	ENSGT00940000157433	ENSGT00510000046406.f.b.a.a.d	ENSGT00510000046406.f.b.a.b	ENSGT00940000157468.a.b	ENSGT00940000153876.B	ENSGT00390000003682	ENSGT00910000144226	ENSGT00530000063869.B	ENSGT00950000183174.A ##22	ENSGT00390000018566	ENSGT00390000003209	ENSGT00940000161891.k	ENSGT00940000154089.b	ENSGT00940000156240	ENSGT00940000157442	ENSGT00940000158557	ENSGT00940000153612.B	ENSGT00390000017839.o.b.a.b	ENSGT00940000158897	ENSGT00940000158891	ENSGT00940000154885.A	ENSGT00940000156515	ENSGT00940000154612.m.a	ENSGT00940000163530
Chacoan peccary	MODERN SPECIES	812	RASAL1 (ENSCWAG00000018387)	CFAP73 (ENSCWAG00000018332)	DDX54 (ENSCWAG00000018290)	RITA1 (ENSCWAG00000018231)	IQCD (ENSCWAG00000018165)	TPCN1 (ENSCWAG00000017970)	SLC8B1 (ENSCWAG00000017762)	OAS2 (ENSCWAG00000017604)	OAS1 (ENSCWAG00000017564)	RPH3A (ENSCWAG00000017096)	ENSCWAG00000017013	PTPN11 (ENSCWAG00000016969)	ENSCWAG00000016942	HECTD4 (ENSCWAG00000016429)	TRAFD1 (ENSCWAG00000016318)	NAA25 (ENSCWAG00000016168) ##22	ERP29 (ENSCWAG00000016131)	TMEM116 (ENSCWAG00000015816)	MAPKAPK5 (ENSCWAG00000015704)	ALDH2 (ENSCWAG00000015605)	BICDL1 (ENSCWAG00000015495)	RAB35 (ENSCWAG00000015436)	GCN1 (ENSCWAG00000014778)	ENSCWAG00000014622	ENSCWAG00000014442	SIRT4 (ENSCWAG00000014375)	PLA2G1B (ENSCWAG00000014263)	MSI1 (ENSCWAG00000014121)	ENSCWAG00000014090	COX6A1 (ENSCWAG00000014059)	ENSCWAG00000014027
Pig	MODERN SPECIES	5	DTX1 (ENSSSCG00000009873)	RASAL1 (ENSSSCG00000009874)	CFAP73 (ENSSSCG00000009875)	DDX54 (ENSSSCG00000009876)	RITA1 (ENSSSCG00000034479)	IQCD (ENSSSCG00000009877)	TPCN1 (ENSSSCG00000009879)	SLC8B1 (ENSSSCG00000009880)	OAS2 (ENSSSCG00000009881)	OAS1 (ENSSSCG00000046640)	RPH3A (ENSSSCG00000009883)	PTPN11 (ENSSSCG00000030289)	RPL6 (ENSSSCG00000039130)	HECTD4 (ENSSSCG00000009885)	TRAFD1 (ENSSSCG00000009886)	NAA25 (ENSSSCG00000009887) ##22	ERP29 (ENSSSCG00000009888)	TMEM116 (ENSSSCG00000009893)	ENSSSCG00000009892	ENSSSCG00000009895	ENSSSCG00000038099	MAPKAPK5 (ENSSSCG00000009890)	ALDH2 (ENSSSCG00000009889)	BICDL1 (ENSSSCG00000009896)	RAB35 (ENSSSCG00000033876)	GCN1 (ENSSSCG00000009898)	RPLP0 (ENSSSCG00000036014)	PXN (ENSSSCG00000040546)	SIRT4 (ENSSSCG00000009901)	PLA2G1B (ENSSSCG00000029501)	MSI1 (ENSSSCG00000029365)
Artiodactyla_a	ANCESTRAL SPECIES	28									ENSGT00510000046406.f.b.a.a.d	ENSGT00510000046406.f.b.a.b	ENSGT00940000157468.a.b	ENSGT00940000153876.B	ENSGT00390000003682	ENSGT00910000144226	ENSGT00530000063869.B	ENSGT00950000183174.A ##22	ENSGT00390000018566	ENSGT00390000003209	ENSGT00940000161891.k	ENSGT00940000161891.l	ENSGT00940000154089.b	ENSGT00940000156240	ENSGT00940000161620	ENSGT00940000164635	ENSGT00500000044909	ENSGT00940000156812	ENSGT00950000183191.b	ENSGT00940000162791	ENSGT00940000160241	ENSGT00940000155578	ENSGT00940000153116.B
Camelidae	ANCESTRAL SPECIES	50										ENSGT00510000046406.f.b.a.b	ENSGT00940000157468.a.b	ENSGT00940000153876.B	ENSGT00390000003682	ENSGT00910000144226	ENSGT00530000063869.B	ENSGT00950000183174.A ##22	ENSGT00390000018566	ENSGT00390000003209	ENSGT00940000161891.k	ENSGT00940000154089.b	ENSGT00940000156240	ENSGT00940000161620	ENSGT00500000044909	ENSGT00940000156812	ENSGT00950000183191.b	ENSGT00940000160241	ENSGT00940000155578	ENSGT00940000153116.B	ENSGT00940000153472.a.a	ENSGT00940000159403	ENSGT00570000079101.a.b
Arabian camel	MODERN SPECIES	25	POP5 (ENSCDRG00005018863)	ENSCDRG00005018935	UNC119B (ENSCDRG00005019110)	ACADS (ENSCDRG00005019139)	SPPL3 (ENSCDRG00005019194)	HNF1A (ENSCDRG00005019223)	C12orf43 (ENSCDRG00005019275)	OASL (ENSCDRG00005019293)	OAS1 (ENSCDRG00005019323)	RPH3A (ENSCDRG00005019408)	ENSCDRG00005019652	PTPN11 (ENSCDRG00005019660)	RPL6 (ENSCDRG00005019676)	HECTD4 (ENSCDRG00005019716)	TRAFD1 (ENSCDRG00005019904)	NAA25 (ENSCDRG00005019937) ##22	ERP29 (ENSCDRG00005020068)	TMEM116 (ENSCDRG00005020084)	ENSCDRG00005020143	MAPKAPK5 (ENSCDRG00005005413)	ALDH2 (ENSCDRG00005005643)	ACAD10 (ENSCDRG00005006054)	ATXN2 (ENSCDRG00005007085)	SH2B3 (ENSCDRG00005009137)	CUX2 (ENSCDRG00005009444)	MYL2 (ENSCDRG00005010209)	CCDC63 (ENSCDRG00005010543)	PPP1CC (ENSCDRG00005010943)	HVCN1 (ENSCDRG00005011411)	TCTN1 (ENSCDRG00005011920)	PPTC7 (ENSCDRG00005012513)
Alpaca	MODERN SPECIES	3087													RPL6 (ENSVPAG00000007000)	HECTD4 (ENSVPAG00000006999)	TRAFD1 (ENSVPAG00000006998)	NAA25 (ENSVPAG00000006997) ##22	ERP29 (ENSVPAG00000006996)	TMEM116 (ENSVPAG00000006995)	MAPKAPK5 (ENSVPAG00000006994)
Artiodactyla_b	ANCESTRAL SPECIES	10	ENSGT00940000160943	ENSGT00940000158715	ENSGT00940000153110.D	ENSGT00550000075100	ENSGT00390000013005	ENSGT00730000111354	ENSGT00940000158958	ENSGT00940000157433	ENSGT00510000046406.f.b.a.a.d	ENSGT00510000046406.f.b.a.b	ENSGT00940000157468.a.b	ENSGT00940000153876.B	ENSGT00390000003682.gb.a	ENSGT00910000144226	ENSGT00530000063869.B	ENSGT00950000183174.A ##22	ENSGT00390000018566	ENSGT00390000003209	ENSGT00940000161891.k	ENSGT00940000161891.l	ENSGT00940000154089.b	ENSGT00940000156240	ENSGT00940000157442	ENSGT00940000158557	ENSGT00940000153612.B	ENSGT00390000017839.o.a	ENSGT00940000158897	ENSGT00940000170510	ENSGT00940000166687	ENSGT00940000158891	ENSGT00940000154885.A
Pecora	ANCESTRAL SPECIES	14	ENSGT00940000160943	ENSGT00940000158715	ENSGT00940000153110.D	ENSGT00550000075100	ENSGT00390000013005	ENSGT00730000111354	ENSGT00940000158958	ENSGT00940000157433	ENSGT00510000046406.f.b.a.a.d	ENSGT00510000046406.f.b.a.b.e	ENSGT00940000157468.a.b	ENSGT00940000153876.B	ENSGT00390000003682.gb.a.d	ENSGT00910000144226	ENSGT00530000063869.B	ENSGT00950000183174.A ##22	ENSGT00390000018566	ENSGT00390000003209	ENSGT00940000161891.k	ENSGT00940000161891.l	ENSGT00940000154089.b	ENSGT00940000156240	ENSGT00940000157442	ENSGT00940000158557	ENSGT00940000153612.B	ENSGT00390000017839.o.a	ENSGT00940000158897	ENSGT00940000170510	ENSGT00940000158891	ENSGT00940000154885.A	ENSGT00940000156515
Yarkand deer	MODERN SPECIES	28	RASAL1 (ENSCHYG00000000531)	CFAP73 (ENSCHYG00000000491)	DDX54 (ENSCHYG00000000366)	RITA1 (ENSCHYG00000000330)	ENSCHYG00000000317	TPCN1 (ENSCHYG00000000285)	SLC8B1 (ENSCHYG00000000213)	OAS2 (ENSCHYG00000000179)	OAS1 (ENSCHYG00000000152)	RPH3A (ENSCHYG00000000100)	PTPN11 (ENSCHYG00000004010)	ENSCHYG00000003988	ENSCHYG00000003976	HECTD4 (ENSCHYG00000003932)	TRAFD1 (ENSCHYG00000003861)	NAA25 (ENSCHYG00000003793) ##22	ERP29 (ENSCHYG00000003761)	TMEM116 (ENSCHYG00000003710)	ENSCHYG00000003680	MAPKAPK5 (ENSCHYG00000003619)	ALDH2 (ENSCHYG00000003523)	BICDL1 (ENSCHYG00000003470)	RAB35 (ENSCHYG00000003441)	GCN1 (ENSCHYG00000003222)	ENSCHYG00000003150	PXN (ENSCHYG00000003049)	SIRT4 (ENSCHYG00000003002)	PLA2G1B (ENSCHYG00000002985)	MSI1 (ENSCHYG00000002954)	ENSCHYG00000002940	ENSCHYG00000002908
Percora_a	ANCESTRAL SPECIES	17	ENSGT00940000158715	ENSGT00940000153110.D	ENSGT00550000075100	ENSGT00390000013005	ENSGT00730000111354	ENSGT00940000158958	ENSGT00940000157433	ENSGT00510000046406.f.b.a.a.d	ENSGT00510000046406.f.b.a.b.e	ENSGT00510000046406.f.b.a.b.f.b	ENSGT00940000157468.a.b	ENSGT00940000153876.B	ENSGT00390000003682.gb.a.d.a	ENSGT00910000144226	ENSGT00530000063869.B	ENSGT00950000183174.A ##22	ENSGT00390000018566	ENSGT00390000003209	ENSGT00940000161891.k	ENSGT00940000161891.l	ENSGT00940000154089.b	ENSGT00940000156240	ENSGT00940000157442	ENSGT00940000158557	ENSGT00940000153612.B	ENSGT00390000017839.o.a	ENSGT00940000158897	ENSGT00940000170510	ENSGT00940000158891	ENSGT00940000154885.A	ENSGT00940000156515
Bovidae	ANCESTRAL SPECIES	17	ENSGT00940000158715	ENSGT00940000153110.D	ENSGT00550000075100	ENSGT00390000013005	ENSGT00730000111354	ENSGT00940000158958	ENSGT00940000157433	ENSGT00510000046406.f.b.a.a.d	ENSGT00510000046406.f.b.a.b.e	ENSGT00510000046406.f.b.a.b.f.b	ENSGT00940000157468.a.b	ENSGT00940000153876.B	ENSGT00390000003682.gb.a.d.a	ENSGT00910000144226	ENSGT00530000063869.B	ENSGT00950000183174.A ##22	ENSGT00390000018566	ENSGT00390000003209	ENSGT00940000161891.k	ENSGT00940000161891.l	ENSGT00940000161067	ENSGT00940000154089.b	ENSGT00940000156240	ENSGT00940000157442	ENSGT00940000158557	ENSGT00940000153612.B	ENSGT00390000017839.o.a	ENSGT00940000158897	ENSGT00940000170510	ENSGT00940000158891	ENSGT00940000154885.A
Caprinae	ANCESTRAL SPECIES	17	ENSGT00940000153110.D	ENSGT00550000075100	ENSGT00390000013005	ENSGT00730000111354	ENSGT00940000158958	ENSGT00940000157433	ENSGT00510000046406.f.b.a.a.d	ENSGT00510000046406.f.b.a.b.e	ENSGT00510000046406.f.b.a.b.f.a	ENSGT00510000046406.f.b.a.b.f.b	ENSGT00940000157468.a.b	ENSGT00940000153876.B	ENSGT00390000003682.gb.a.d.a.d	ENSGT00910000144226	ENSGT00530000063869.B	ENSGT00950000183174.A ##22	ENSGT00390000018566	ENSGT00390000003209	ENSGT00940000161891.k	ENSGT00940000164542	ENSGT00940000154089.b	ENSGT00940000156240	ENSGT00940000157442	ENSGT00940000158557	ENSGT00940000153612.B	ENSGT00390000017839.o.a	ENSGT00940000158897	ENSGT00940000170510	ENSGT00940000158891	ENSGT00940000154885.A	ENSGT00940000156515
Goat	MODERN SPECIES	8	CFAP73 (ENSCHIG00000013401)	DDX54 (ENSCHIG00000026798)	RITA1 (ENSCHIG00000010968)	IQCD (ENSCHIG00000017847)	TPCN1 (ENSCHIG00000027241)	SLC8B1 (ENSCHIG00000025545)	ENSCHIG00000023778	ENSCHIG00000017038	OAS1 (ENSCHIG00000019892)	RPH3A (ENSCHIG00000022127)	PTPN11 (ENSCHIG00000019333)	ENSCHIG00000015166	ENSCHIG00000020808	ENSCHIG00000018375	TRAFD1 (ENSCHIG00000017565)	NAA25 (ENSCHIG00000010664) ##22	ERP29 (ENSCHIG00000012465)	TMEM116 (ENSCHIG00000021727)	ENSCHIG00000021746	ENSCHIG00000014031	ALDH2 (ENSCHIG00000023248)	BICDL1 (ENSCHIG00000014548)	RAB35 (ENSCHIG00000026986)	GCN1 (ENSCHIG00000024349)	RPLP0 (ENSCHIG00000015368)	PXN (ENSCHIG00000010749)	SIRT4 (ENSCHIG00000000860)	PLA2G1B (ENSCHIG00000010501)	MSI1 (ENSCHIG00000024304)	ENSCHIG00000026106	ENSCHIG00000010983
Rambouillet Sheep	MODERN SPECIES	8	RITA1 (ENSOARG00020016329)	IQCD (ENSOARG00020016405)	TPCN1 (ENSOARG00020016480)	SLC8B1 (ENSOARG00020017327)	OAS2 (ENSOARG00020017574)	ENSOARG00020017761	ENSOARG00020017928	ENSOARG00020018043	ENSOARG00020018096	RPH3A (ENSOARG00020018314)	ENSOARG00020019240	PTPN11 (ENSOARG00020019275)	ENSOARG00020019356	HECTD4 (ENSOARG00020019407)	TRAFD1 (ENSOARG00020019810)	NAA25 (ENSOARG00020019863) ##22	ERP29 (ENSOARG00020020022)	TMEM116 (ENSOARG00020020104)	ENSOARG00020020304	ENSOARG00020020353	MAPKAPK5 (ENSOARG00020020384)	ALDH2 (ENSOARG00020020566)	BICDL1 (ENSOARG00020020670)	RAB35 (ENSOARG00020020773)	GCN1 (ENSOARG00020020866)	RPLP0 (ENSOARG00020021193)	PXN (ENSOARG00020021342)	ENSOARG00020021816	SIRT4 (ENSOARG00020021864)	PLA2G1B (ENSOARG00020021905)	MSI1 (ENSOARG00020021980)
Bovinae	ANCESTRAL SPECIES	13	ENSGT00940000158715	ENSGT00940000153110.D	ENSGT00550000075100	ENSGT00390000013005	ENSGT00730000111354	ENSGT00940000158958	ENSGT00940000157433	ENSGT00510000046406.f.b.a.a.d	ENSGT00510000046406.f.b.a.b.e	ENSGT00510000046406.f.b.a.b.f.b	ENSGT00940000157468.a.b	ENSGT00940000153876.B	ENSGT00390000003682.gb.a.d.a.a	ENSGT00910000144226	ENSGT00530000063869.B	ENSGT00950000183174.A ##22	ENSGT00390000018566	ENSGT00390000003209	ENSGT00950000183010.a.b.a.a.a.a.b	ENSGT00940000161891.k	ENSGT00940000161891.l	ENSGT00940000154089.b	ENSGT00940000156240	ENSGT00940000157442	ENSGT00940000158557	ENSGT00940000153612.B	ENSGT00390000017839.o.a	ENSGT00940000158897	ENSGT00940000158891	ENSGT00940000154885.A	ENSGT00940000156515
Bos	ANCESTRAL SPECIES	14	ENSGT00940000160943	ENSGT00940000158715	ENSGT00940000153110.D	ENSGT00550000075100	ENSGT00390000013005	ENSGT00730000111354	ENSGT00940000158958	ENSGT00940000157433	ENSGT00510000046406.f.b.a.a.d	ENSGT00510000046406.f.b.a.b.e	ENSGT00940000157468.a.b	ENSGT00940000153876.B	ENSGT00390000003682.gb.a.d.a.a	ENSGT00910000144226	ENSGT00530000063869.B	ENSGT00950000183174.A ##22	ENSGT01100000263480.a.a.a.a.b.b.b.b	ENSGT00390000018566.n	ENSGT00390000003209	ENSGT00940000161891.l.c.a.a	ENSGT00950000183010.a.b.a.a.a.a.b	ENSGT00940000161891.k	ENSGT00940000161891.l.d	ENSGT00940000154089.b	ENSGT00940000156240	ENSGT00940000157442	ENSGT00940000158557	ENSGT00940000153612.B	ENSGT00390000017839.o.a	ENSGT00940000158897	ENSGT00940000158891
Bos_b	ANCESTRAL SPECIES	13	ENSGT00940000160943	ENSGT00940000158715	ENSGT00940000153110.D	ENSGT00550000075100	ENSGT00390000013005	ENSGT00730000111354	ENSGT00940000158958	ENSGT00940000157433	ENSGT00510000046406.f.b.a.a.d	ENSGT00510000046406.f.b.a.b.e	ENSGT00940000157468.a.b	ENSGT00940000153876.B	ENSGT00390000003682.gb.a.d.a.a	ENSGT00910000144226	ENSGT00530000063869.B	ENSGT00950000183174.A ##22	ENSGT01100000263480.a.a.a.a.b.b.b.b	ENSGT00390000018566.n	ENSGT00390000003209	ENSGT00940000161891.k	ENSGT00940000161891.l.c.a.b.a.a	ENSGT00940000161891.l.c.a.a	ENSGT00940000154089.b	ENSGT00940000156240	ENSGT00940000157442	ENSGT00940000158557	ENSGT00940000153612.B	ENSGT00390000017839.o.a	ENSGT00940000158897	ENSGT00940000158891	ENSGT00940000154885.A
Hybrid Bos Indicus	MODERN SPECIES	8	CFAP73 (ENSBIXG00005025597)	DDX54 (ENSBIXG00005025638)	RITA1 (ENSBIXG00005025655)	IQCD (ENSBIXG00005004376)	TPCN1 (ENSBIXG00005025891)	SLC8B1 (ENSBIXG00005026028)	OAS2 (ENSBIXG00005026117)	OAS1 (ENSBIXG00005026169)	RPH3A (ENSBIXG00005026780)	PTPN11 (ENSBIXG00005026987)	ENSBIXG00005007769	ENSBIXG00005027110	HECTD4 (ENSBIXG00005027288)	TRAFD1 (ENSBIXG00005027354)	ENSBIXG00005027372	NAA25 (ENSBIXG00005027395) ##22	ERP29 (ENSBIXG00005027415)	TMEM116 (ENSBIXG00005027493)	ENSBIXG00005027508	ENSBIXG00005006622	ENSBIXG00005027575	ENSBIXG00005027585	ENSBIXG00005027590	MAPKAPK5 (ENSBIXG00005027614)	ALDH2 (ENSBIXG00005027675)	BICDL1 (ENSBIXG00005027728)	RAB35 (ENSBIXG00005027772)	GCN1 (ENSBIXG00005027905)	RPLP0 (ENSBIXG00005028020)	PXN (ENSBIXG00005007786)	SIRT4 (ENSBIXG00005028207)
Cow	MODERN SPECIES	8	CFAP73 (ENSBTAG00000011924)	DDX54 (ENSBTAG00000011930)	RITA1 (ENSBTAG00000011937)	IQCD (ENSBTAG00000001806)	TPCN1 (ENSBTAG00000011102)	SLC8B1 (ENSBTAG00000011103)	OAS2 (ENSBTAG00000014628)	OAS1Y (ENSBTAG00000039861)	OAS1X (ENSBTAG00000053807)	OAS1Z (ENSBTAG00000037527)	RPH3A (ENSBTAG00000004247)	PTPN11 (ENSBTAG00000002048)	RPL6 (ENSBTAG00000031723)	HECTD4 (ENSBTAG00000008762)	TRAFD1 (ENSBTAG00000008761)	NAA25 (ENSBTAG00000006666) ##22	ENSBTAG00000054534	ERP29 (ENSBTAG00000006665)	TMEM116 (ENSBTAG00000006659)	ENSBTAG00000054901	ENSBTAG00000031693	MAPKAPK5 (ENSBTAG00000009346)	ALDH2 (ENSBTAG00000008743)	BICDL1 (ENSBTAG00000003696)	RAB35 (ENSBTAG00000022044)	GCN1 (ENSBTAG00000017379)	RPLP0 (ENSBTAG00000017389)	PXN (ENSBTAG00000018108)	SIRT4 (ENSBTAG00000021168)	PLA2G1B (ENSBTAG00000026732)	MSI1 (ENSBTAG00000009800)
Bos_a	ANCESTRAL SPECIES	14	ENSGT00940000160943	ENSGT00940000158715	ENSGT00940000153110.D	ENSGT00550000075100	ENSGT00390000013005	ENSGT00730000111354	ENSGT00940000158958	ENSGT00940000157433	ENSGT00510000046406.f.b.a.a.d	ENSGT00510000046406.f.b.a.b.e	ENSGT00940000157468.a.b	ENSGT00940000153876.B	ENSGT00390000003682.gb.a.d.a.a	ENSGT00910000144226	ENSGT00530000063869.B	ENSGT00950000183174.A ##22	ENSGT01100000263480.a.a.a.a.b.b.b.b	ENSGT00390000018566.n	ENSGT00390000003209	ENSGT00950000183010.a.b.a.a.a.a.b	ENSGT00940000161891.k	ENSGT00940000161891.l.d	ENSGT00940000154089.b	ENSGT00940000156240	ENSGT00940000157442	ENSGT00940000158557	ENSGT00940000153612.B	ENSGT00390000017839.o.a	ENSGT00940000158897	ENSGT00940000158891	ENSGT00940000154885.A
Domestic yak	MODERN SPECIES	7	DTX1 (ENSBGRG00000016518)	RASAL1 (ENSBGRG00000016591)	CFAP73 (ENSBGRG00000016833)	DDX54 (ENSBGRG00000016939)	RITA1 (ENSBGRG00000017024)	IQCD (ENSBGRG00000017100)	TPCN1 (ENSBGRG00000017228)	SLC8B1 (ENSBGRG00000018280)	OAS2 (ENSBGRG00000018710)	OAS1 (ENSBGRG00000018939)	RPH3A (ENSBGRG00000019161)	PTPN11 (ENSBGRG00000019798)	ENSBGRG00000020003	HECTD4 (ENSBGRG00000020611)	TRAFD1 (ENSBGRG00000026052)	NAA25 (ENSBGRG00000026066) ##22	ENSBGRG00000026083	ERP29 (ENSBGRG00000026087)	TMEM116 (ENSBGRG00000026093)	ENSBGRG00000026110	ENSBGRG00000026113	ENSBGRG00000026118	MAPKAPK5 (ENSBGRG00000026124)	ALDH2 (ENSBGRG00000026145)	BICDL1 (ENSBGRG00000026169)	RAB35 (ENSBGRG00000026176)	GCN1 (ENSBGRG00000026191)	RPLP0 (ENSBGRG00000026224)	PXN (ENSBGRG00000026252)	SIRT4 (ENSBGRG00000026294)	ENSBGRG00000026299
Wild yak	MODERN SPECIES	2327													ENSBMUG00000007384	HECTD4 (ENSBMUG00000007418)	TRAFD1 (ENSBMUG00000007445)	NAA25 (ENSBMUG00000007463) ##22	ERP29 (ENSBMUG00000007476)	TMEM116 (ENSBMUG00000007520)	ENSBMUG00000007571
American bison	MODERN SPECIES	3351	CFAP73 (ENSBBBG00000013966)	DDX54 (ENSBBBG00000003054)	RITA1 (ENSBBBG00000003034)	IQCD (ENSBBBG00000007073)	TPCN1 (ENSBBBG00000013906)	SLC8B1 (ENSBBBG00000002979)	OAS2 (ENSBBBG00000002953)	ENSBBBG00000013769	ENSBBBG00000013754	RPH3A (ENSBBBG00000013732)	ENSBBBG00000007453	PTPN11 (ENSBBBG00000002820)	ENSBBBG00000013558	HECTD4 (ENSBBBG00000013529)	TRAFD1 (ENSBBBG00000002711)	NAA25 (ENSBBBG00000013295) ##22	ERP29 (ENSBBBG00000002691)	ENSBBBG00000013278	TMEM116 (ENSBBBG00000008113)	ENSBBBG00000013230	ENSBBBG00000013224	MAPKAPK5 (ENSBBBG00000013207)	ALDH2 (ENSBBBG00000013184)	BICDL1 (ENSBBBG00000013161)	ENSBBBG00000002647	GCN1 (ENSBBBG00000009091)	RPLP0 (ENSBBBG00000002518)	PXN (ENSBBBG00000002491)	SIRT4 (ENSBBBG00000012800)	PLA2G1B (ENSBBBG00000007649)	MSI1 (ENSBBBG00000002472)
Siberian musk deer	MODERN SPECIES	1175	DDX54 (ENSMMSG00000018478)	RITA1 (ENSMMSG00000018441)	IQCD (ENSMMSG00000018420)	TPCN1 (ENSMMSG00000018292)	SLC8B1 (ENSMMSG00000018182)	OAS2 (ENSMMSG00000017990)	ENSMMSG00000017956	ENSMMSG00000017865	RPH3A (ENSMMSG00000017347)	ENSMMSG00000017310	PTPN11 (ENSMMSG00000017282)	ENSMMSG00000017244	ENSMMSG00000017203	HECTD4 (ENSMMSG00000016999)	ENSMMSG00000016937	NAA25 (ENSMMSG00000016887) ##22	ERP29 (ENSMMSG00000016858)	TMEM116 (ENSMMSG00000016723)	ENSMMSG00000016693	MAPKAPK5 (ENSMMSG00000016553)	ALDH2 (ENSMMSG00000014802)	BICDL1 (ENSMMSG00000014745)	RAB35 (ENSMMSG00000014719)	GCN1 (ENSMMSG00000014575)	ENSMMSG00000014387	PXN (ENSMMSG00000014224)	SIRT4 (ENSMMSG00000014183)	PLA2G1B (ENSMMSG00000014109)	MSI1 (ENSMMSG00000014066)	COX6A1 (ENSMMSG00000014048)	TRIAP1 (ENSMMSG00000014035)
Cetacea	ANCESTRAL SPECIES	11	ENSGT00940000160943	ENSGT00940000158715	ENSGT00940000153110.D	ENSGT00550000075100	ENSGT00390000013005	ENSGT00730000111354	ENSGT00940000158958	ENSGT00940000157433	ENSGT00510000046406.f.b.a.a.d	ENSGT00510000046406.f.b.a.b.h	ENSGT00940000157468.a.b	ENSGT00940000153876.B	ENSGT00390000003682.gb.a.a	ENSGT00910000144226	ENSGT00530000063869.B	ENSGT00950000183174.A ##22	ENSGT00390000018566	ENSGT00390000003209	ENSGT00940000161891.k	ENSGT00940000161891.l	ENSGT00940000154089.b	ENSGT00940000156240	ENSGT00940000157442	ENSGT00940000158557	ENSGT00940000153612.B	ENSGT00390000017839.o.a	ENSGT00940000158897	ENSGT00940000158891	ENSGT00940000154885.A	ENSGT00940000156515	ENSGT00940000154612.m.a.a
Blue whale	MODERN SPECIES	5	DDX54 (ENSBMSG00010017844)	RITA1 (ENSBMSG00010017883)	IQCD (ENSBMSG00010017912)	TPCN1 (ENSBMSG00010017969)	SLC8B1 (ENSBMSG00010018183)	ENSBMSG00010018254	OAS2 (ENSBMSG00010018262)	ENSBMSG00010018354	ENSBMSG00010018433	ENSBMSG00010018636	RPH3A (ENSBMSG00010018700)	PTPN11 (ENSBMSG00010019008)	ENSBMSG00010019058	HECTD4 (ENSBMSG00010008670)	TRAFD1 (ENSBMSG00010008710)	NAA25 (ENSBMSG00010008727) ##22	ERP29 (ENSBMSG00010008749)	TMEM116 (ENSBMSG00010008775)	ENSBMSG00010008860	ENSBMSG00010008872	ENSBMSG00010008881	MAPKAPK5 (ENSBMSG00010008906)	ALDH2 (ENSBMSG00010008956)	BICDL1 (ENSBMSG00010008994)	RAB35 (ENSBMSG00010009059)	GCN1 (ENSBMSG00010009106)	ENSBMSG00010009142	PXN (ENSBMSG00010009195)	SIRT4 (ENSBMSG00010009262)	PLA2G1B (ENSBMSG00010009278)	MSI1 (ENSBMSG00010009297)
Odontoceti	ANCESTRAL SPECIES	10	ENSGT00940000158715	ENSGT00940000153110.D	ENSGT00550000075100	ENSGT00390000013005	ENSGT00730000111354	ENSGT00940000158958	ENSGT00940000157433	ENSGT00510000046406.f.b.a.a.d	ENSGT00510000046406.f.b.a.b.h	ENSGT00940000157468.a.b	ENSGT00940000153876.B	ENSGT00390000003682.gb.a.a.a	ENSGT00910000144226	ENSGT00530000063869.B	ENSGT00940000153314.a.b.a.a.a	ENSGT00950000183174.A ##22	ENSGT00390000018566	ENSGT00390000003209	ENSGT00940000161891.k	ENSGT00940000161891.l	ENSGT00940000154089.b	ENSGT00940000156240	ENSGT00940000157442	ENSGT00940000158557	ENSGT00940000153612.B	ENSGT00390000017839.o.a	ENSGT00940000158897	ENSGT00940000158891	ENSGT00940000154885.A	ENSGT00940000156515	ENSGT00940000154612.m.a.a
Sperm whale	MODERN SPECIES	10	LHX5 (ENSPCTG00005015110)	SDSL (ENSPCTG00005014914)	SDS (ENSPCTG00005014792)	PLBD2 (ENSPCTG00005014206)	DDX54 (ENSPCTG00005014018)	ENSPCTG00005013862	ENSPCTG00005013793	OAS2 (ENSPCTG00005013711)	OAS1 (ENSPCTG00005013310)	RPH3A (ENSPCTG00005012552)	PTPN11 (ENSPCTG00005012444)	ENSPCTG00005012366	HECTD4 (ENSPCTG00005010900)	TRAFD1 (ENSPCTG00005010690)	ENSPCTG00005010650	NAA25 (ENSPCTG00005010518) ##22	ERP29 (ENSPCTG00005010443)	ENSPCTG00005010388	TMEM116 (ENSPCTG00005010200)	ENSPCTG00005010144	ENSPCTG00005010129	MAPKAPK5 (ENSPCTG00005010051)	ALDH2 (ENSPCTG00005009980)	ACADS (ENSPCTG00005009864)	SPPL3 (ENSPCTG00005009797)	ENSPCTG00005009771	POP5 (ENSPCTG00005009700)	RNF10 (ENSPCTG00005009638)	COQ5 (ENSPCTG00005009576)	ENSPCTG00005009524	SRSF9 (ENSPCTG00005009486)
Odontoceti_a	ANCESTRAL SPECIES	9	ENSGT00940000158715	ENSGT00940000153110.D	ENSGT00550000075100	ENSGT00390000013005	ENSGT00730000111354	ENSGT00940000158958	ENSGT00940000157433	ENSGT00510000046406.f.b.a.a.d	ENSGT00510000046406.f.b.a.b.h	ENSGT00940000157468.a.b	ENSGT00940000153876.B	ENSGT00390000003682.gb.a.a.a	ENSGT00910000144226	ENSGT00530000063869.B	ENSGT00940000153314.a.b.a.a.a	ENSGT00950000183174.A ##22	ENSGT00390000018566	ENSGT00390000003209	ENSGT00940000161891.l	ENSGT00940000154089.b	ENSGT00940000156240	ENSGT00940000157442	ENSGT00940000158557	ENSGT00940000153612.B	ENSGT00390000017839.o.a	ENSGT00940000158897	ENSGT00940000158891	ENSGT00940000154885.A	ENSGT00940000156515	ENSGT00940000154612.m.a.a	ENSGT00940000163530
Dolphin	MODERN SPECIES	2998														HECTD4 (ENSTTRG00000010806)	TRAFD1 (ENSTTRG00000010802)	NAA25 (ENSTTRG00000010797) ##22	ERP29 (ENSTTRG00000010793)	TMEM116 (ENSTTRG00000010783)	MAPKAPK5 (ENSTTRG00000010760)
Odontoceti_b	ANCESTRAL SPECIES	10	ENSGT00940000158715	ENSGT00940000153110.D	ENSGT00550000075100	ENSGT00390000013005	ENSGT00730000111354	ENSGT00940000158958	ENSGT00940000157433	ENSGT00510000046406.f.b.a.a.d	ENSGT00510000046406.f.b.a.b.h	ENSGT00940000157468.a.b	ENSGT00940000153876.B	ENSGT00390000003682.gb.a.a.a	ENSGT00910000144226	ENSGT00530000063869.B	ENSGT00940000153314.a.b.a.a.a	ENSGT00950000183174.A ##22	ENSGT00390000018566	ENSGT00390000003209	ENSGT00940000161891.l	ENSGT00940000154089.b	ENSGT00940000156240	ENSGT00940000157442	ENSGT00940000158557	ENSGT00940000153612.B	ENSGT00390000017839.o.a	ENSGT00940000158897	ENSGT00940000158891	ENSGT00940000154885.A	ENSGT00940000156515	ENSGT00940000154612.m.a.a	ENSGT00940000162087
Vaquita	MODERN SPECIES	5	ENSPSNG00000009137	DDX54 (ENSPSNG00000009086)	RITA1 (ENSPSNG00000009034)	IQCD (ENSPSNG00000009007)	TPCN1 (ENSPSNG00000008966)	SLC8B1 (ENSPSNG00000008811)	ENSPSNG00000008727	ENSPSNG00000008699	ENSPSNG00000008657	RPH3A (ENSPSNG00000008410)	PTPN11 (ENSPSNG00000008302)	ENSPSNG00000008240	HECTD4 (ENSPSNG00000008134)	TRAFD1 (ENSPSNG00000008046)	ENSPSNG00000007998	NAA25 (ENSPSNG00000007979) ##22	ERP29 (ENSPSNG00000007936)	TMEM116 (ENSPSNG00000007732)	ENSPSNG00000007680	MAPKAPK5 (ENSPSNG00000007634)	ALDH2 (ENSPSNG00000007565)	ENSPSNG00000007525	BICDL1 (ENSPSNG00000007451)	RAB35 (ENSPSNG00000007407)	GCN1 (ENSPSNG00000007351)	RPLP0 (ENSPSNG00000007243)	PXN (ENSPSNG00000007071)	SIRT4 (ENSPSNG00000006915)	PLA2G1B (ENSPSNG00000006864)	MSI1 (ENSPSNG00000006799)	ENSPSNG00000006774
Monodontidae	ANCESTRAL SPECIES	8	ENSGT00940000160943	ENSGT00940000158715	ENSGT00940000153110.D	ENSGT00550000075100	ENSGT00390000013005	ENSGT00730000111354	ENSGT00940000158958	ENSGT00940000157433	ENSGT00510000046406.f.b.a.a.d	ENSGT00510000046406.f.b.a.b.h	ENSGT00940000157468.a.b	ENSGT00940000153876.B	ENSGT00390000003682.gb.a.a.a	ENSGT00910000144226	ENSGT00530000063869.B	ENSGT00950000183174.A ##22	ENSGT00390000018566	ENSGT00390000003209	ENSGT00940000161891.l	ENSGT00940000154089.b	ENSGT00940000156240	ENSGT00940000157442	ENSGT00940000158557	ENSGT00940000153612.B	ENSGT00390000017839.o.a	ENSGT00940000158897	ENSGT00940000158891	ENSGT00940000154885.A	ENSGT00940000156515	ENSGT00940000154612.m.a.a	ENSGT00940000162087
Beluga whale	MODERN SPECIES	60	RASAL1 (ENSDLEG00000020505)	CFAP73 (ENSDLEG00000020500)	DDX54 (ENSDLEG00000020490)	RITA1 (ENSDLEG00000020482)	IQCD (ENSDLEG00000020479)	ENSDLEG00000020477	TPCN1 (ENSDLEG00000020463)	ENSDLEG00000020455	OAS2 (ENSDLEG00000020328)	OAS1 (ENSDLEG00000020314)	RPH3A (ENSDLEG00000019955)	PTPN11 (ENSDLEG00000019931)	ENSDLEG00000019926	HECTD4 (ENSDLEG00000019702)	TRAFD1 (ENSDLEG00000019660)	ENSDLEG00000019657 ##22	ENSDLEG00000019650	ERP29 (ENSDLEG00000019646)	FAM200B (ENSDLEG00000019635)	TMEM116 (ENSDLEG00000019629)	ENSDLEG00000019626	MAPKAPK5 (ENSDLEG00000019612)	ENSDLEG00000019591	ENSDLEG00000018829	BICDL1 (ENSDLEG00000018772)	RAB35 (ENSDLEG00000018756)	GCN1 (ENSDLEG00000018026)	RPLP0 (ENSDLEG00000017943)	PXN (ENSDLEG00000017888)	SIRT4 (ENSDLEG00000017858)	PLA2G1B (ENSDLEG00000017837)
Narwhal	MODERN SPECIES	295	DTX1 (ENSMMNG00015001175)	RASAL1 (ENSMMNG00015001118)	CFAP73 (ENSMMNG00015001081)	DDX54 (ENSMMNG00015001030)	RITA1 (ENSMMNG00015000996)	IQCD (ENSMMNG00015000965)	TPCN1 (ENSMMNG00015000924)	SLC8B1 (ENSMMNG00015000851)	OAS2 (ENSMMNG00015000524)	ENSMMNG00015000349	RPH3A (ENSMMNG00015000181)	PTPN11 (ENSMMNG00015012248)	ENSMMNG00015012222	HECTD4 (ENSMMNG00015011971)	TRAFD1 (ENSMMNG00015011840)	NAA25 (ENSMMNG00015011808) ##22	ERP29 (ENSMMNG00015011792)	TMEM116 (ENSMMNG00015011750)	ENSMMNG00015011733	MAPKAPK5 (ENSMMNG00015011720)	ALDH2 (ENSMMNG00015011653)	ENSMMNG00015011617	BICDL1 (ENSMMNG00015011592)	RAB35 (ENSMMNG00015011558)	GCN1 (ENSMMNG00015011468)	RPLP0 (ENSMMNG00015011415)	PXN (ENSMMNG00015011350)	SIRT4 (ENSMMNG00015011309)	PLA2G1B (ENSMMNG00015011284)	MSI1 (ENSMMNG00015011256)	ENSMMNG00015011243
Cyclostomata	ANCESTRAL SPECIES																	ENSGT00950000183174.A ##22
Hagfish	MODERN SPECIES	1340								slc25a16 (ENSEBUG00000014139)	ENSEBUG00000009078	ENSEBUG00000013228	ENSEBUG00000000813	paqr3a (ENSEBUG00000016892)	ENSEBUG00000015795	ENSEBUG00000012772	ENSEBUG00000005659	ENSEBUG00000000342 ##22	ENSEBUG00000016369	unc119.1 (ENSEBUG00000016761)	drg1 (ENSEBUG00000008333)	ENSEBUG00000012499	ENSEBUG00000008836	ENSEBUG00000013537	VARS1 (ENSEBUG00000004637)	ENSEBUG00000010912	ENSEBUG00000010513	ENSEBUG00000015852
Ciona	ANCESTRAL SPECIES	57													ENSGT00530000067779	ENSGT00940000169426	ENSGT00940000170976	ENSGT00950000183174.A ##22	ENSGT00660000097440	ENSGT00940000166538.b.b	ENSGT00940000155098
Ciona savignyi	MODERN SPECIES	297	ENSCSAVG00000004834	ENSCSAVG00000004828	ENSCSAVG00000004487	ENSCSAVG00000004474	ENSCSAVG00000004471	ENSCSAVG00000004470	ENSCSAVG00000004466	ENSCSAVG00000004462	ENSCSAVG00000004460	ENSCSAVG00000004458	ENSCSAVG00000004454	ENSCSAVG00000004450	ENSCSAVG00000004444	ENSCSAVG00000004433	ENSCSAVG00000003999	ENSCSAVG00000003988 ##22	ENSCSAVG00000003972	ENSCSAVG00000003934	ENSCSAVG00000003688	ENSCSAVG00000003537	ENSCSAVG00000003251
Ciona intestinalis	MODERN SPECIES	8	ENSCING00000017235	ENSCING00000013489	ENSCING00000018979	ENSCING00000008875	ENSCING00000024213	ENSCING00000012014	ENSCING00000008874	ENSCING00000008873	ENSCING00000008872	ENSCING00000024893	ENSCING00000019840	ENSCING00000020141	ENSCING00000018876	ENSCING00000008870	ENSCING00000008868	ENSCING00000013487 ##22	ENSCING00000022515	ENSCING00000020889	ENSCING00000008867	ENSCING00000008866	ENSCING00000008865	ENSCING00000013486	ENSCING00000008864	ENSCING00000023807	ENSCING00000025029	ENSCING00000019902	ENSCING00000024225	ENSCING00000009831	ENSCING00000008861	ENSCING00000008860	otx2 (ENSCING00000019349)
Ecdysozoa	ANCESTRAL SPECIES																	ENSGT00950000183174.A ##22
Fruitfly	MODERN SPECIES	19	Xport-B (FBgn0260234)	Xport-A (FBgn0038749)	CG4465 (FBgn0038750)	CG4770 (FBgn0038751)	CG4462 (FBgn0038752)	CG4459 (FBgn0038753)	Hs6st (FBgn0038755)	mira (FBgn0021776)	CG46042 (FBgn0267709)	CG4783 (FBgn0038756)	CG31213 (FBgn0051213)	MED25 (FBgn0038760)	CG17190 (FBgn0038761)	CG4836 (FBgn0270925)	PIG-L (FBgn0038763)	psidin (FBgn0243511) ##22	CG4424 (FBgn0038765)	CG4854 (FBgn0038766)	trem (FBgn0038767)	CG4936 (FBgn0038768)	Regnase-1 (FBgn0038769)	CG17193 (FBgn0040571)	CG33934 (FBgn0064119)	Indy-2 (FBgn0260466)	CG4390 (FBgn0038771)	mdlc (FBgn0038772)	Rh3 (FBgn0003249)	CG31206 (FBgn0051206)	CG10887 (FBgn0038773)	Gr92a (FBgn0045471)	CG5023 (FBgn0038774)
Caenorhabditis elegans	MODERN SPECIES	2	inf-1 (WBGene00002083)	flap-1 (WBGene00018998)	pdf-1 (WBGene00020317)	T07E3.2 (WBGene00020313)	T07E3.3 (WBGene00020314)	brc-2 (WBGene00020316)	T07E3.4 (WBGene00020315)	K04C2.5 (WBGene00019382)	K04C2.2 (WBGene00019380)	brd-1 (WBGene00000265)	med-2 (WBGene00003181)	K04C2.7 (WBGene00044311)	K04C2.3 (WBGene00019381)	K04C2.8 (WBGene00044312)	kbp-1 (WBGene00020064)	cra-1 (WBGene00020068) ##22	sma-3 (WBGene00004857)	clec-158 (WBGene00020067)	zak-1 (WBGene00006971)	srv-1 (WBGene00005712)	dhhc-5 (WBGene00020066)	ten-1 (WBGene00006498)	F28F5.6 (WBGene00017905)	F28F5.4 (WBGene00043297)	lim-8 (WBGene00017904)	R05H11.2 (WBGene00019908)	R05H11.1 (WBGene00019907)	dig-1 (WBGene00000998)	K07E12.2 (WBGene00019501)	Y102E9.6 (WBGene00044453)	Y102E9.3 (WBGene00022421)
Yeast	MODERN SPECIES	15	DUF1 (YOL087C)	MHF1 (YOL086W-A)	ADH1 (YOL086C)	YOL085W-A	YOL085C	PHM7 (YOL084W)	ATG34 (YOL083W)	YOL083C-A	ATG19 (YOL082W)	IRA2 (YOL081W)	REX4 (YOL080C)	YOL079W	AVO1 (YOL078W)	ATP19 (YOL077W-A)	BRX1 (YOL077C)	MDM20 (YOL076W) ##22	YOL075C	DSC2 (YOL073C)	THP1 (YOL072W)	YOL071W	NBA1 (YOL070C)	NUF2 (YOL069W)	HST1 (YOL068C)	RTG1 (YOL067C)	RIB2 (YOL066C)	INP54 (YOL065C)	MET22 (YOL064C)	CRT10 (YOL063C)	APM4 (YOL062C)	PRS5 (YOL061W)	MAM3 (YOL060C)