Gnathostomata	ANCESTRAL SPECIES																	ENSGT00940000154063.C.a.b #22
Euteleostomi	ANCESTRAL SPECIES																	ENSGT00940000154063.C.a.b #22
Sarcopterygii	ANCESTRAL SPECIES	812														ENSGT00940000160446 #21	ENSGT00940000165414	ENSGT00940000154063.C.a.b #22
Tetrapoda	ANCESTRAL SPECIES	376														ENSGT00940000160446 #21	ENSGT00940000165414	ENSGT00940000154063.C.a.b #22
Amniota	ANCESTRAL SPECIES	36	ENSGT00530000064035.b	ENSGT00510000049510	ENSGT00930000151050	ENSGT00730000114714	ENSGT00680000100126	ENSGT00960000191971	ENSGT00510000050587	ENSGT00940000163334	ENSGT00940000162163	ENSGT00940000161354 #17	ENSGT00940000159125 #18	ENSGT00940000154130.a.a.a #19	ENSGT00950000183047.c.a #20	ENSGT00940000160446 #21	ENSGT00940000165414	ENSGT00940000154063.C.a.b #22	ENSGT01060000248544.a.a.b.a.a #23	ENSGT00940000164486	ENSGT00940000154394.b.a.b	ENSGT00730000111343	ENSGT00940000154394.b.a.a.b.b	ENSGT00940000161573 #27	ENSGT00950000183101.a.b.a #28	ENSGT00940000159428 #29	ENSGT00940000156051 #30	ENSGT00940000163693	ENSGT00440000038032 #31	ENSGT00950000182993.B.b #32	ENSGT00390000014585 #33	ENSGT00390000005830 #34
Mammalia	ANCESTRAL SPECIES	64								ENSGT00940000163334	ENSGT00940000162163	ENSGT00940000161354 #17	ENSGT00940000159125 #18	ENSGT00940000154130.a.a.a #19	ENSGT00950000183047.c.a #20	ENSGT00940000160446 #21	ENSGT00940000165414	ENSGT00940000154063.C.a.b #22	ENSGT01060000248544.a.a.b.a.a #23	ENSGT00940000164486	ENSGT00940000154394.b.a.a.b.b	ENSGT00940000161573 #27	ENSGT00950000183101.a.b.a #28	ENSGT00940000159428 #29	ENSGT00940000156051 #30	ENSGT00940000163693	ENSGT00440000038032 #31	ENSGT00950000182993.B.b #32	ENSGT00390000014585 #33	ENSGT00390000005830 #34	ENSGT00530000063861.a	ENSGT00940000158914	ENSGT00940000159311.c
Theria	ANCESTRAL SPECIES	41								ENSGT00940000163334	ENSGT00940000162163	ENSGT00940000161354 #17	ENSGT00940000159125 #18	ENSGT00940000154130.a.a.a #19	ENSGT00950000183047.c.a #20	ENSGT00940000160446 #21	ENSGT00940000165414	ENSGT00940000154063.C.a.b #22	ENSGT01060000248544.a.a.b.a.a #23	ENSGT00390000006244 #25	ENSGT00940000164486	ENSGT00940000154394.b.a.a.b.b	ENSGT00940000161573 #27	ENSGT00950000183101.a.b.a #28	ENSGT00940000159428 #29	ENSGT00940000162419	ENSGT00940000156051 #30	ENSGT00940000163693	ENSGT00440000038032 #31	ENSGT00950000182993.B.b #32	ENSGT00390000014585 #33	ENSGT00390000005830 #34	ENSGT00730000110920.b.a.a #35
Eutheria	ANCESTRAL SPECIES	24	ENSGT00940000158035	ENSGT01030000234635.a.a.a.b	ENSGT00940000162852.a	ENSGT00940000162117	ENSGT00390000003207	ENSGT00940000159972	ENSGT00940000162084	ENSGT00950000183216	ENSGT00950000183069	ENSGT00940000162163	ENSGT00940000161354 #17	ENSGT00940000159125 #18	ENSGT00940000154130.a.a.a #19	ENSGT00950000183047.c.a #20	ENSGT00940000160446 #21	ENSGT00940000154063.C.a.b #22	ENSGT01060000248544.a.a.b.a.a #23	ENSGT00390000006744 #24	ENSGT00390000006244 #25	ENSGT00940000164486	ENSGT00940000161972 #26	ENSGT00940000161573 #27	ENSGT00950000183101.a.b.a #28	ENSGT00940000159428 #29	ENSGT00940000162419	ENSGT00940000156051 #30	ENSGT00940000163693	ENSGT00440000038032 #31	ENSGT00950000182993.B.b #32	ENSGT00390000014585 #33	ENSGT00390000005830 #34
Boreoeutheria	ANCESTRAL SPECIES	18	ENSGT00940000159130	ENSGT00950000183036.b	ENSGT00940000162948	ENSGT00390000014215	ENSGT00390000000427	ENSGT00940000157375	ENSGT00940000154146.b.b.b	ENSGT00940000155404 #15	ENSGT00950000183069.b	ENSGT00940000162163	ENSGT00940000161354 #17	ENSGT00940000159125 #18	ENSGT00940000154130.a.a.a #19	ENSGT00950000183047.c.a #20	ENSGT00940000160446 #21	ENSGT00940000154063.C.a.b #22	ENSGT01060000248544.a.a.b.a.a #23	ENSGT00390000006744 #24	ENSGT00390000006244 #25	ENSGT00940000164486	ENSGT00940000161972 #26	ENSGT00940000161573 #27	ENSGT00950000183101.a.b.a #28	ENSGT00940000159428 #29	ENSGT00940000162419	ENSGT00940000156051 #30	ENSGT00940000163693	ENSGT00440000038032 #31	ENSGT00950000182993.B.b #32	ENSGT00390000014585 #33	ENSGT00390000005830 #34
Euarchontoglires	ANCESTRAL SPECIES	18	ENSGT00950000183036.b	ENSGT00940000162948	ENSGT00390000014215	ENSGT00390000000427	ENSGT00940000157375	ENSGT00940000154146.b.b.b	ENSGT00940000155404 #15	ENSGT00940000160844.b	ENSGT00950000183005.b.c.b #16	ENSGT00940000162163	ENSGT00940000161354 #17	ENSGT00940000159125 #18	ENSGT00940000154130.a.a.a #19	ENSGT00950000183047.c.a #20	ENSGT00940000160446 #21	ENSGT00940000154063.C.a.b #22	ENSGT01060000248544.a.a.b.a.a #23	ENSGT00390000006744 #24	ENSGT00390000006244 #25	ENSGT00940000161972 #26	ENSGT00940000161573 #27	ENSGT00950000183101.a.b.a #28	ENSGT00940000159428 #29	ENSGT00940000162419	ENSGT00940000156051 #30	ENSGT00940000163693	ENSGT00440000038032 #31	ENSGT00950000182993.B.b #32	ENSGT00390000014585 #33	ENSGT00390000005830 #34	ENSGT00730000110920.b.a.a #35
Primates	ANCESTRAL SPECIES	18	ENSGT00950000183036.b	ENSGT00940000162948	ENSGT00390000014215	ENSGT00390000000427	ENSGT00940000157375	ENSGT00940000154146.b.b.b	ENSGT00940000155404 #15	ENSGT00940000160844.b	ENSGT00950000183005.b.c.b #16	ENSGT00940000162163	ENSGT00940000161354 #17	ENSGT00940000159125 #18	ENSGT00940000154130.a.a.a #19	ENSGT00950000183047.c.a #20	ENSGT00940000160446 #21	ENSGT00940000154063.C.a.b #22	ENSGT01060000248544.a.a.b.a.a #23	ENSGT00390000006744 #24	ENSGT00390000006244 #25	ENSGT00940000161972 #26	ENSGT00940000161573 #27	ENSGT00950000183101.a.b.a #28	ENSGT00940000159428 #29	ENSGT00940000162419	ENSGT00940000156051 #30	ENSGT00940000163693	ENSGT00440000038032 #31	ENSGT00950000182993.B.b #32	ENSGT00390000014585 #33	ENSGT00390000005830 #34	ENSGT00730000110920.b.a.a #35
Strepsirrhini	ANCESTRAL SPECIES	26								ENSGT00940000155404 #15	ENSGT00950000183005.b.c.b #16	ENSGT00940000162163	ENSGT00940000161354 #17	ENSGT00940000159125 #18	ENSGT00940000154130.a.a.a #19	ENSGT00950000183047.c.a #20	ENSGT00940000160446 #21	ENSGT00940000154063.C.a.b #22	ENSGT01060000248544.a.a.b.a.a #23	ENSGT00390000006744 #24	ENSGT00390000006244 #25	ENSGT00940000161972 #26	ENSGT00940000161573 #27	ENSGT00950000183101.a.b.a #28	ENSGT00940000159428 #29	ENSGT00940000162419	ENSGT00940000156051 #30	ENSGT00940000163693	ENSGT00440000038032 #31	ENSGT00950000182993.B.b #32	ENSGT00390000014585 #33	ENSGT00390000005830 #34	ENSGT00730000110920.b.a.a #35
Lemuriformes	ANCESTRAL SPECIES	22									ENSGT00940000155404 #15	ENSGT00950000183005.b.c.b #16	ENSGT00940000161354 #17	ENSGT00940000159125 #18	ENSGT00940000154130.a.a.a #19	ENSGT00950000183047.c.a #20	ENSGT00940000160446 #21	ENSGT00940000154063.C.a.b #22	ENSGT01060000248544.a.a.b.a.a #23	ENSGT00390000006744 #24	ENSGT00390000006244 #25	ENSGT00940000161972 #26	ENSGT00940000161573 #27	ENSGT00950000183101.a.b.a #28	ENSGT00940000159428 #29	ENSGT00940000162419	ENSGT00940000156051 #30	ENSGT00440000038032 #31	ENSGT00950000182993.B.b #32	ENSGT00390000014585 #33	ENSGT00390000005830 #34	ENSGT00730000110920.b.a.a #35	ENSGT00940000158800 #36
Mouse lemur	MODERN SPECIES	16									INSR (ENSMICG00000011978) #15	ENSMICG00000042948 #16	ADGRE1 (ENSMICG00000034364) #17	VAV1 (ENSMICG00000014001) #18	SH2D3A (ENSMICG00000000937) #19	TRIP10 (ENSMICG00000000935) #20	GPR108 (ENSMICG00000042263) #21	C3 (ENSMICG00000000921) #22	TNFSF14 (ENSMICG00000033223) #23	CD70 (ENSMICG00000042047) #24	TNFSF9 (ENSMICG00000046337) #25	TUBB4A (ENSMICG00000014890) #26	DENND1C (ENSMICG00000004586) #27	CRB3 (ENSMICG00000034140) #28	SLC25A23 (ENSMICG00000034151) #29	KHSRP (ENSMICG00000007863) #30	GTF2F1 (ENSMICG00000006292) #31	PSPN (ENSMICG00000044211) #32	ALKBH7 (ENSMICG00000006288) #33	ENSMICG00000006284 #34	ACER1 (ENSMICG00000006279) #35	MLLT1 (ENSMICG00000006273) #36	ACSBG2 (ENSMICG00000014476) #37
Lemuriformes_a	ANCESTRAL SPECIES	17			ENSGT00940000163044	ENSGT00940000154619	ENSGT00940000162532	ENSGT00940000162241	ENSGT00940000153686.s.b	ENSGT00940000153686.s.a.a	ENSGT00940000155404 #15	ENSGT00950000183005.b.c.b #16	ENSGT00940000161354 #17	ENSGT00940000159125 #18	ENSGT00940000154130.a.a.a #19	ENSGT00950000183047.c.a #20	ENSGT00940000160446 #21	ENSGT00940000154063.C.a.b #22	ENSGT01060000248544.a.a.b.a.a #23	ENSGT00390000006744 #24	ENSGT00390000006244 #25	ENSGT00940000161972 #26	ENSGT00940000161573 #27	ENSGT00950000183101.a.b.a.i #28	ENSGT00940000159428 #29	ENSGT00940000162419	ENSGT00940000156051 #30	ENSGT00440000038032 #31	ENSGT00950000182993.B.b #32	ENSGT00390000014585 #33	ENSGT00390000005830 #34	ENSGT00730000110920.b.a.a #35	ENSGT00940000158800 #36
Greater bamboo lemur	MODERN SPECIES	158											ADGRE1 (ENSPSMG00000009291) #17	VAV1 (ENSPSMG00000009646) #18	SH2D3A (ENSPSMG00000009873) #19	TRIP10 (ENSPSMG00000009927) #20	GPR108 (ENSPSMG00000009999) #21	C3 (ENSPSMG00000010055) #22	TNFSF14 (ENSPSMG00000010082) #23	CD70 (ENSPSMG00000010087) #24	TNFSF9 (ENSPSMG00000010091) #25	TUBB4A (ENSPSMG00000010210) #26	DENND1C (ENSPSMG00000010519) #27	ENSPSMG00000010533 #28	SLC25A23 (ENSPSMG00000010559) #29	SLC25A41 (ENSPSMG00000010572)	KHSRP (ENSPSMG00000010582) #30
Coquerels sifaka	MODERN SPECIES	348							ZNF317 (ENSPCOG00000017287)	ENSPCOG00000024249	ENSPCOG00000012646	INSR (ENSPCOG00000025098) #15	ADGRE1 (ENSPCOG00000005255) #17	VAV1 (ENSPCOG00000019002) #18	SH2D3A (ENSPCOG00000018681) #19	TRIP10 (ENSPCOG00000013866) #20	GPR108 (ENSPCOG00000007215) #21	C3 (ENSPCOG00000018007) #22	TNFSF14 (ENSPCOG00000018066) #23	CD70 (ENSPCOG00000015987) #24	TNFSF9 (ENSPCOG00000014608) #25	TUBB4A (ENSPCOG00000015978) #26	DENND1C (ENSPCOG00000004246) #27	CRB3 (ENSPCOG00000028855) #28	SLC25A23 (ENSPCOG00000001217) #29	SLC25A41 (ENSPCOG00000003363)	KHSRP (ENSPCOG00000027506) #30	GTF2F1 (ENSPCOG00000013474) #31	PSPN (ENSPCOG00000025496) #32	ALKBH7 (ENSPCOG00000028026) #33	CLPP (ENSPCOG00000027215) #34	ACER1 (ENSPCOG00000016715) #35	MLLT1 (ENSPCOG00000014345) #36
Bushbaby	MODERN SPECIES	242										ENSOGAG00000009354	ADGRE1 (ENSOGAG00000028445) #17	VAV1 (ENSOGAG00000002034) #18	ENSOGAG00000034187 #19	TRIP10 (ENSOGAG00000026236) #20	GPR108 (ENSOGAG00000026135) #21	C3 (ENSOGAG00000002028) #22	TNFSF14 (ENSOGAG00000000974) #23	CD70 (ENSOGAG00000001157) #24	TNFSF9 (ENSOGAG00000015299) #25	TUBB4A (ENSOGAG00000027332) #26	DENND1C (ENSOGAG00000034782) #27	CRB3 (ENSOGAG00000008078) #28	SLC25A23 (ENSOGAG00000008076) #29	SLC25A41 (ENSOGAG00000034049)	KHSRP (ENSOGAG00000008073) #30	ENSOGAG00000030767	ENSOGAG00000008070 #31	PSPN (ENSOGAG00000033652) #32	ALKBH7 (ENSOGAG00000030625) #33	CLPP (ENSOGAG00000028227) #34	ACER1 (ENSOGAG00000001804) #35
Haplorrhini	ANCESTRAL SPECIES	14	ENSGT00940000159130	ENSGT00950000183036.b	ENSGT00940000162948	ENSGT00390000014215	ENSGT00390000000427	ENSGT00940000157375	ENSGT00940000154146.b.b.b	ENSGT00940000155404 #15	ENSGT00940000160844.b	ENSGT00950000183005.b.c.b #16	ENSGT00940000161354 #17	ENSGT00940000159125 #18	ENSGT00940000154130.a.a.a #19	ENSGT00950000183047.c.a #20	ENSGT00940000160446 #21	ENSGT00940000154063.C.a.b #22	ENSGT01060000248544.a.a.b.a.a #23	ENSGT00390000006744 #24	ENSGT00390000006244 #25	ENSGT00940000161972 #26	ENSGT00940000161573 #27	ENSGT00950000183101.a.b.a #28	ENSGT00940000159428 #29	ENSGT00940000162419	ENSGT00940000156051 #30	ENSGT00440000038032 #31	ENSGT00950000182993.B.b #32	ENSGT00390000014585 #33	ENSGT00390000005830 #34	ENSGT00730000110920.b.a.a #35	ENSGT00940000158800 #36
Simiiformes	ANCESTRAL SPECIES	13	ENSGT00950000183036.b	ENSGT00940000162948	ENSGT00390000014215	ENSGT00390000000427	ENSGT00940000157375	ENSGT00940000154146.b.b.b	ENSGT00940000155404 #15	ENSGT00940000160844.b	ENSGT00950000183005.b.c.b #16	ENSGT00940000162163	ENSGT00940000161354 #17	ENSGT00940000159125 #18	ENSGT00940000154130.a.a.a #19	ENSGT00950000183047.c.a #20	ENSGT00940000160446 #21	ENSGT00940000154063.C.a.b #22	ENSGT01060000248544.a.a.b.a.a #23	ENSGT00390000006744 #24	ENSGT00390000006244 #25	ENSGT00940000161972 #26	ENSGT00940000161573 #27	ENSGT00950000183101.a.b.a #28	ENSGT00940000159428 #29	ENSGT00940000162419	ENSGT00940000156051 #30	ENSGT00440000038032 #31	ENSGT00950000182993.B.b #32	ENSGT00390000014585 #33	ENSGT00390000005830 #34	ENSGT00730000110920.b.a.a #35	ENSGT00940000158800 #36
Catarrhini	ANCESTRAL SPECIES		ENSGT00950000183036.b	ENSGT00940000162948	ENSGT00390000014215	ENSGT00390000000427	ENSGT00940000157375	ENSGT00940000154146.b.b.b	ENSGT00940000155404 #15	ENSGT00940000160844.b	ENSGT00950000183005.b.c.b #16	ENSGT00940000162163	ENSGT00940000161354 #17	ENSGT00940000159125 #18	ENSGT00940000154130.a.a.a #19	ENSGT00950000183047.c.a #20	ENSGT00940000160446 #21	ENSGT00940000154063.C.a.b #22	ENSGT01060000248544.a.a.b.a.a #23	ENSGT00390000006744 #24	ENSGT00390000006244 #25	ENSGT00940000161972.d.a #26	ENSGT00940000161573 #27	ENSGT00950000183101.a.b.a #28	ENSGT00940000159428 #29	ENSGT00940000162419	ENSGT00940000156051 #30	ENSGT00440000038032 #31	ENSGT00950000182993.B.b #32	ENSGT00390000014585 #33	ENSGT00390000005830 #34	ENSGT00730000110920.b.a.a #35	ENSGT00940000158800 #36
Hominoidea	ANCESTRAL SPECIES		ENSGT00940000162948	ENSGT00390000014215	ENSGT00390000000427	ENSGT00940000157375	ENSGT00940000154146.b.b.b	ENSGT00940000155404 #15	ENSGT00940000160844.b	ENSGT00950000183005.b.c.b #16	ENSGT00390000002019	ENSGT00940000162163	ENSGT00940000161354 #17	ENSGT00940000159125 #18	ENSGT00940000154130.a.a.a #19	ENSGT00950000183047.c.a #20	ENSGT00940000160446 #21	ENSGT00940000154063.C.a.b #22	ENSGT01060000248544.a.a.b.a.a #23	ENSGT00390000006744 #24	ENSGT00390000006244 #25	ENSGT00940000161972.d.a #26	ENSGT00940000161573 #27	ENSGT00950000183101.a.b.a #28	ENSGT00940000159428 #29	ENSGT00940000162419	ENSGT00940000156051 #30	ENSGT00440000038032 #31	ENSGT00950000182993.B.b #32	ENSGT00390000014585 #33	ENSGT00390000005830 #34	ENSGT00730000110920.b.a.a #35	ENSGT00940000158800 #36
Hominidae	ANCESTRAL SPECIES		ENSGT00940000162948	ENSGT00390000014215	ENSGT00390000000427	ENSGT00940000157375	ENSGT00940000154146.b.b.b	ENSGT00940000155404 #15	ENSGT00940000160844.b	ENSGT00950000183005.b.c.b #16	ENSGT00390000002019	ENSGT00940000162163	ENSGT00940000161354 #17	ENSGT00940000159125 #18	ENSGT00940000154130.a.a.a #19	ENSGT00950000183047.c.a #20	ENSGT00940000160446 #21	ENSGT00940000154063.C.a.b #22	ENSGT01060000248544.a.a.b.a.a #23	ENSGT00390000006744 #24	ENSGT00390000006244 #25	ENSGT00940000161972.d.a #26	ENSGT00940000161573 #27	ENSGT00950000183101.a.b.a #28	ENSGT00940000159428 #29	ENSGT00940000162419	ENSGT00940000156051 #30	ENSGT00440000038032 #31	ENSGT00950000182993.B.b #32	ENSGT00390000014585 #33	ENSGT00390000005830 #34	ENSGT00730000110920.b.a.a #35	ENSGT00940000158800 #36
Homo/Pan/Gorilla group	ANCESTRAL SPECIES		ENSGT00390000014215	ENSGT00390000000427	ENSGT00940000157375	ENSGT00940000154146.b.b.b	ENSGT00940000155404 #15	ENSGT00940000160844.b	ENSGT00950000183005.b.c.b.a #16	ENSGT00950000183005.b.c.b.b #16	ENSGT00390000002019	ENSGT00940000162163	ENSGT00940000161354 #17	ENSGT00940000159125 #18	ENSGT00940000154130.a.a.a #19	ENSGT00950000183047.c.a #20	ENSGT00940000160446 #21	ENSGT00940000154063.C.a.b #22	ENSGT01060000248544.a.a.b.a.a #23	ENSGT00390000006744 #24	ENSGT00390000006244 #25	ENSGT00940000161972.d.a #26	ENSGT00940000161573 #27	ENSGT00950000183101.a.b.a #28	ENSGT00940000159428 #29	ENSGT00940000162419	ENSGT00940000156051 #30	ENSGT00440000038032 #31	ENSGT00950000182993.B.b #32	ENSGT00390000014585 #33	ENSGT00390000005830 #34	ENSGT00730000110920.b.a.a #35	ENSGT00910000148057
Gorilla	MODERN SPECIES	10	TEX45 (ENSGGOG00000007773)	PEX11G (ENSGGOG00000004741)	ENSGGOG00000004730	ENSGGOG00000027635	INSR (ENSGGOG00000013703) #15	ZNF557 (ENSGGOG00000041869)	ENSGGOG00000024776 #16	ENSGGOG00000024592 #16	ENSGGOG00000038257	ENSGGOG00000044153	ADGRE1 (ENSGGOG00000007858) #17	VAV1 (ENSGGOG00000012257) #18	SH2D3A (ENSGGOG00000012243) #19	ENSGGOG00000012222 #20	GPR108 (ENSGGOG00000013176) #21	C3 (ENSGGOG00000013159) #22	TNFSF14 (ENSGGOG00000015906) #23	CD70 (ENSGGOG00000009206) #24	TNFSF9 (ENSGGOG00000023927) #25	TUBB4A (ENSGGOG00000027067) #26	DENND1C (ENSGGOG00000007075) #27	CRB3 (ENSGGOG00000007070) #28	SLC25A23 (ENSGGOG00000007058) #29	ENSGGOG00000007048	KHSRP (ENSGGOG00000007028) #30	GTF2F1 (ENSGGOG00000000318) #31	PSPN (ENSGGOG00000000316) #32	ALKBH7 (ENSGGOG00000027915) #33	ENSGGOG00000011638	ACER1 (ENSGGOG00000010886) #35	ENSGGOG00000040780
Homo/Pan group	ANCESTRAL SPECIES		ENSGT00940000159130	ENSGT00950000183036.b	ENSGT00940000162948	ENSGT00390000014215	ENSGT00390000000427	ENSGT00940000157375	ENSGT00940000154146.b.b.b	ENSGT00940000155404 #15	ENSGT00940000160844.b	ENSGT00950000183005.b.c.b.a #16	ENSGT00940000161354 #17	ENSGT00940000159125 #18	ENSGT00940000154130.a.a.a #19	ENSGT00950000183047.c.a #20	ENSGT00940000160446 #21	ENSGT00940000154063.C.a.b #22	ENSGT01060000248544.a.a.b.a.a #23	ENSGT00390000006744 #24	ENSGT00390000006244 #25	ENSGT00940000161972.d.a #26	ENSGT00940000161573 #27	ENSGT00950000183101.a.b.a #28	ENSGT00940000159428 #29	ENSGT00940000162419	ENSGT00940000156051 #30	ENSGT00440000038032 #31	ENSGT00950000182993.B.b #32	ENSGT00390000014585 #33	ENSGT00390000005830 #34	ENSGT00730000110920.b.a.a #35	ENSGT00910000148057
Human	MODERN SPECIES	10	TEX45 (ENSG00000198723)	PEX11G (ENSG00000104883)	ARHGEF18 (ENSG00000104880)	INSR (ENSG00000171105) #15	ZNF557 (ENSG00000130544)	MBD3L3 (ENSG00000182315) #16	MBD3L2 (ENSG00000230522) #16	MBD3L4 (ENSG00000205718) #16	MBD3L5 (ENSG00000237247) #16	MBD3L2B (ENSG00000196589) #16	ADGRE1 (ENSG00000174837) #17	VAV1 (ENSG00000141968) #18	SH2D3A (ENSG00000125731) #19	TRIP10 (ENSG00000125733) #20	GPR108 (ENSG00000125734) #21	C3 (ENSG00000125730) #22	TNFSF14 (ENSG00000125735) #23	CD70 (ENSG00000125726) #24	TNFSF9 (ENSG00000125657) #25	TUBB4A (ENSG00000104833) #26	DENND1C (ENSG00000205744) #27	CRB3 (ENSG00000130545) #28	SLC25A23 (ENSG00000125648) #29	SLC25A41 (ENSG00000181240)	KHSRP (ENSG00000088247) #30	GTF2F1 (ENSG00000125651) #31	PSPN (ENSG00000125650) #32	ALKBH7 (ENSG00000125652) #33	CLPP (ENSG00000125656) #34	ACER1 (ENSG00000167769) #35	MLLT1 (ENSG00000130382) #36
Pan	ANCESTRAL SPECIES	14	ENSGT00940000162948	ENSGT00390000014215	ENSGT00390000000427	ENSGT00940000157375	ENSGT00940000154146.b.b.b	ENSGT00940000155404 #15	ENSGT00940000160844.b	ENSGT00950000183005.b.c.b.b #16	ENSGT00390000002019	ENSGT00940000162163	ENSGT00940000161354 #17	ENSGT00940000159125 #18	ENSGT00940000154130.a.a.a #19	ENSGT00950000183047.c.a #20	ENSGT00940000160446 #21	ENSGT00940000154063.C.a.b #22	ENSGT01060000248544.a.a.b.a.a #23	ENSGT00390000006744 #24	ENSGT00390000006244 #25	ENSGT00940000161972.d.a #26	ENSGT00940000161573 #27	ENSGT00950000183101.a.b.a #28	ENSGT00940000159428 #29	ENSGT00940000162419	ENSGT00940000156051 #30	ENSGT00440000038032 #31	ENSGT00950000182993.B.b #32	ENSGT00390000014585 #33	ENSGT00390000005830 #34	ENSGT00730000110920.b.a.a #35	ENSGT00910000148057
Chimpanzee	MODERN SPECIES	10	ENSPTRG00000010387	ENSPTRG00000048270	INSR (ENSPTRG00000010386) #15	ZNF557 (ENSPTRG00000010385)	ENSPTRG00000029156 #16	ENSPTRG00000010384 #16	ENSPTRG00000045284 #16	ENSPTRG00000052340	ENSPTRG00000050085	ENSPTRG00000043646	ADGRE1 (ENSPTRG00000010379) #17	VAV1 (ENSPTRG00000010378) #18	SH2D3A (ENSPTRG00000010377) #19	TRIP10 (ENSPTRG00000010376) #20	GPR108 (ENSPTRG00000010375) #21	C3 (ENSPTRG00000010373) #22	TNFSF14 (ENSPTRG00000010372) #23	CD70 (ENSPTRG00000040770) #24	TNFSF9 (ENSPTRG00000043305) #25	TUBB4A (ENSPTRG00000010369) #26	DENND1C (ENSPTRG00000029159) #27	CRB3 (ENSPTRG00000010367) #28	SLC25A23 (ENSPTRG00000010366) #29	SLC25A41 (ENSPTRG00000010365)	KHSRP (ENSPTRG00000010364) #30	GTF2F1 (ENSPTRG00000010362) #31	PSPN (ENSPTRG00000045539) #32	ALKBH7 (ENSPTRG00000010360) #33	CLPP (ENSPTRG00000010359) #34	ACER1 (ENSPTRG00000010358) #35	ENSPTRG00000045179
Bonobo	MODERN SPECIES	10	ZNF358 (ENSPPAG00000013665)	ENSPPAG00000034081	PEX11G (ENSPPAG00000019932)	ENSPPAG00000040930	ENSPPAG00000031298	INSR (ENSPPAG00000028332) #15	ZNF557 (ENSPPAG00000030881)	ENSPPAG00000042336 #16	ENSPPAG00000012604	ENSPPAG00000031773	ADGRE1 (ENSPPAG00000033638) #17	VAV1 (ENSPPAG00000036601) #18	SH2D3A (ENSPPAG00000037810) #19	TRIP10 (ENSPPAG00000034017) #20	GPR108 (ENSPPAG00000029432) #21	C3 (ENSPPAG00000035996) #22	TNFSF14 (ENSPPAG00000037246) #23	CD70 (ENSPPAG00000029346) #24	TNFSF9 (ENSPPAG00000043434) #25	TUBB4A (ENSPPAG00000021486) #26	DENND1C (ENSPPAG00000037306) #27	CRB3 (ENSPPAG00000028757) #28	SLC25A23 (ENSPPAG00000040203) #29	SLC25A41 (ENSPPAG00000037155)	ENSPPAG00000036398 #30	GTF2F1 (ENSPPAG00000006377) #31	PSPN (ENSPPAG00000038423) #32	ALKBH7 (ENSPPAG00000028564) #33	CLPP (ENSPPAG00000041016) #34	ACER1 (ENSPPAG00000041682) #35	MLLT1 (ENSPPAG00000042286) #36
Orangutan	MODERN SPECIES	10	TEX45 (ENSPPYG00000009475)	PEX11G (ENSPPYG00000030478)	ENSPPYG00000009473	ENSPPYG00000009472	INSR (ENSPPYG00000009471) #15	ZNF557 (ENSPPYG00000009470)	ENSPPYG00000010518 #16	ENSPPYG00000038664 #16	ENSPPYG00000009469	ENSPPYG00000009467	ADGRE1 (ENSPPYG00000009466) #17	VAV1 (ENSPPYG00000009465) #18	SH2D3A (ENSPPYG00000009464) #19	TRIP10 (ENSPPYG00000009463) #20	GPR108 (ENSPPYG00000009462) #21	C3 (ENSPPYG00000009461) #22	TNFSF14 (ENSPPYG00000031179) #23	ENSPPYG00000009460 #24	TNFSF9 (ENSPPYG00000009459) #25	TUBB4A (ENSPPYG00000041695) #26	DENND1C (ENSPPYG00000009458) #27	ENSPPYG00000009457 #28	SLC25A23 (ENSPPYG00000009456) #29	SLC25A41 (ENSPPYG00000009455)	KHSRP (ENSPPYG00000009454) #30	PSPN (ENSPPYG00000009451) #32	ALKBH7 (ENSPPYG00000033281) #33	CLPP (ENSPPYG00000009449) #34	ACER1 (ENSPPYG00000009448) #35	MLLT1 (ENSPPYG00000009447) #36	ACSBG2 (ENSPPYG00000009446) #37
Gibbon	MODERN SPECIES		ENSNLEG00000000965	ENSNLEG00000000947	PNPLA6 (ENSNLEG00000000886)	MCOLN1 (ENSNLEG00000000839)	ENSNLEG00000000836	PEX11G (ENSNLEG00000000829)	ENSNLEG00000026714	ENSNLEG00000028702	INSR (ENSNLEG00000000403) #15	ENSNLEG00000000394	ADGRE1 (ENSNLEG00000000380) #17	ENSNLEG00000032882 #18	SH2D3A (ENSNLEG00000000371) #19	TRIP10 (ENSNLEG00000000351) #20	ENSNLEG00000000344 #21	C3 (ENSNLEG00000016006) #22	TNFSF14 (ENSNLEG00000016000) #23	CD70 (ENSNLEG00000015993) #24	TUBB4A (ENSNLEG00000032392) #26	DENND1C (ENSNLEG00000015941) #27	CRB3 (ENSNLEG00000030283) #28	ENSNLEG00000015935 #29	KHSRP (ENSNLEG00000015923) #30	GTF2F1 (ENSNLEG00000015909) #31	ENSNLEG00000029103	ACER1 (ENSNLEG00000015897) #35	ENSNLEG00000015892 #36	ACSBG2 (ENSNLEG00000015883) #37	RFX2 (ENSNLEG00000015842)	RANBP3 (ENSNLEG00000015710)	CAPS (ENSNLEG00000015702)
Cercopithecidae	ANCESTRAL SPECIES	17	ENSGT00950000183036.b	ENSGT00940000162948	ENSGT00390000014215	ENSGT00390000000427	ENSGT00940000157375	ENSGT00940000154146.b.b.b	ENSGT00940000155404 #15	ENSGT00940000160844.b	ENSGT00950000183005.b.c.b #16	ENSGT00940000162163	ENSGT00940000161354 #17	ENSGT00940000159125 #18	ENSGT00940000154130.a.a.a #19	ENSGT00950000183047.c.a #20	ENSGT00940000160446.c #21	ENSGT00940000154063.C.a.b #22	ENSGT01060000248544.a.a.b.a.a #23	ENSGT00390000006744 #24	ENSGT00390000006244 #25	ENSGT00940000161972.d.a #26	ENSGT00940000161573 #27	ENSGT00950000183101.a.b.a #28	ENSGT00940000159428 #29	ENSGT00940000162419	ENSGT00940000156051.mc.a #30	ENSGT00440000038032.q #31	ENSGT00950000182993.B.b #32	ENSGT00390000014585 #33	ENSGT00390000005830 #34	ENSGT00730000110920.b.a.a #35	ENSGT00940000158800 #36
Cercopithecinae	ANCESTRAL SPECIES	1	ENSGT00950000183036.b	ENSGT00940000162948	ENSGT00390000014215	ENSGT00390000000427	ENSGT00940000157375	ENSGT00940000154146.b.b.b	ENSGT00940000155404 #15	ENSGT00940000160844.b	ENSGT00950000183005.b.c.b #16	ENSGT00940000162163	ENSGT00940000161354 #17	ENSGT00940000159125 #18	ENSGT00940000154130.a.a.a #19	ENSGT00950000183047.c.a #20	ENSGT00940000160446.c #21	ENSGT00940000154063.C.a.b #22	ENSGT01060000248544.a.a.b.a.a #23	ENSGT00390000006744 #24	ENSGT00390000006244 #25	ENSGT00940000161972.d.a #26	ENSGT00940000161573 #27	ENSGT00950000183101.a.b.a #28	ENSGT00940000159428 #29	ENSGT00940000162419	ENSGT00940000156051.mc.a #30	ENSGT00440000038032.q #31	ENSGT00950000182993.B.b #32	ENSGT00390000014585 #33	ENSGT00390000005830 #34	ENSGT00730000110920.b.a.a #35	ENSGT00940000158800 #36
Cercopithecinae_a	ANCESTRAL SPECIES	3	ENSGT00950000183036.b	ENSGT00940000162948	ENSGT00390000014215	ENSGT00390000000427	ENSGT00940000157375	ENSGT00940000154146.b.b.b	ENSGT00940000155404 #15	ENSGT00940000160844.b	ENSGT00950000183005.b.c.b #16	ENSGT00940000162163	ENSGT00940000161354 #17	ENSGT00940000159125 #18	ENSGT00940000154130.a.a.a #19	ENSGT00950000183047.c.a #20	ENSGT00940000160446.c #21	ENSGT00940000154063.C.a.b #22	ENSGT01060000248544.a.a.b.a.a #23	ENSGT00390000006744 #24	ENSGT00390000006244 #25	ENSGT00940000161972.d.a #26	ENSGT00940000161573 #27	ENSGT00950000183101.a.b.a #28	ENSGT00940000159428 #29	ENSGT00940000162419	ENSGT00940000156051.mc.a #30	ENSGT00440000038032.q #31	ENSGT00950000182993.B.b #32	ENSGT00390000014585 #33	ENSGT00390000005830 #34	ENSGT00730000110920.b.a.a #35	ENSGT00940000158800 #36
Cercopithecinae_b	ANCESTRAL SPECIES	13	ENSGT00940000159130	ENSGT00950000183036.b	ENSGT00940000162948	ENSGT00390000014215	ENSGT00390000000427	ENSGT00940000157375	ENSGT00940000154146.b.b.b	ENSGT00940000155404 #15	ENSGT00940000160844.b	ENSGT00950000183005.b.c.b #16	ENSGT00940000161354 #17	ENSGT00940000159125 #18	ENSGT00940000154130.a.a.a #19	ENSGT00950000183047.c.a #20	ENSGT00940000160446.c #21	ENSGT00940000154063.C.a.b #22	ENSGT01060000248544.a.a.b.a.a #23	ENSGT00390000006744 #24	ENSGT00390000006244 #25	ENSGT00940000161972.d.a #26	ENSGT00940000161573 #27	ENSGT00950000183101.a.b.a #28	ENSGT00940000159428 #29	ENSGT00940000162419	ENSGT00940000156051.mc.a #30	ENSGT00440000038032.q #31	ENSGT00950000182993.B.b #32	ENSGT00390000014585 #33	ENSGT00390000005830 #34	ENSGT00730000110920.b.a.a #35	ENSGT00940000158800 #36
Cercopithecinae_d	ANCESTRAL SPECIES	22											ENSGT00940000161354 #17	ENSGT00940000159125 #18	ENSGT00940000154130.a.a.a #19	ENSGT00950000183047.c.a #20	ENSGT00940000160446.c #21	ENSGT00940000154063.C.a.b #22	ENSGT01060000248544.a.a.b.a.a #23	ENSGT00390000006744 #24	ENSGT00390000006244 #25	ENSGT00940000161972.d.a #26	ENSGT00940000161573 #27	ENSGT00950000183101.a.b.a #28	ENSGT00940000159428 #29	ENSGT00940000162419	ENSGT00940000156051.mc.a #30	ENSGT00440000038032.q #31	ENSGT00950000182993.B.b #32	ENSGT00390000014585 #33	ENSGT00390000005830 #34	ENSGT00730000110920.b.a.a #35	ENSGT00940000158800 #36
Sooty mangabey	MODERN SPECIES	177											ADGRE1 (ENSCATG00000024272) #17	VAV1 (ENSCATG00000033046) #18	SH2D3A (ENSCATG00000040346) #19	TRIP10 (ENSCATG00000039125) #20	ENSCATG00000040475 #21	C3 (ENSCATG00000021880) #22	TNFSF14 (ENSCATG00000034862) #23	CD70 (ENSCATG00000013090) #24	TNFSF9 (ENSCATG00000032350) #25	TUBB4A (ENSCATG00000032861) #26	DENND1C (ENSCATG00000016215) #27	CRB3 (ENSCATG00000036281) #28	SLC25A23 (ENSCATG00000033633) #29	SLC25A41 (ENSCATG00000035228)	KHSRP (ENSCATG00000036458) #30	ENSCATG00000034000 #31	PSPN (ENSCATG00000035142) #32	ALKBH7 (ENSCATG00000030199) #33	CLPP (ENSCATG00000032343) #34	ACER1 (ENSCATG00000026770) #35	MLLT1 (ENSCATG00000036992) #36
Drill	MODERN SPECIES	1534											ADGRE1 (ENSMLEG00000028603) #17	VAV1 (ENSMLEG00000029419) #18	SH2D3A (ENSMLEG00000043148) #19	TRIP10 (ENSMLEG00000037606) #20	ENSMLEG00000036455 #21	C3 (ENSMLEG00000030923) #22	TNFSF14 (ENSMLEG00000043307) #23	CD70 (ENSMLEG00000016471) #24	TUBB4A (ENSMLEG00000030013) #26	DENND1C (ENSMLEG00000039863) #27	CRB3 (ENSMLEG00000034520) #28	SLC25A23 (ENSMLEG00000040513) #29	SLC25A41 (ENSMLEG00000033366)	KHSRP (ENSMLEG00000030501) #30	GTF2F1 (ENSMLEG00000027908) #31	PSPN (ENSMLEG00000036794) #32	ALKBH7 (ENSMLEG00000039193) #33	CLPP (ENSMLEG00000022592) #34	ACER1 (ENSMLEG00000042127) #35	MLLT1 (ENSMLEG00000034524) #36	ACSBG2 (ENSMLEG00000021100) #37
Macaca	ANCESTRAL SPECIES	24	ENSGT00950000183036.b	ENSGT00940000162948	ENSGT00390000014215	ENSGT00390000000427	ENSGT00940000157375	ENSGT00940000154146.b.b.b	ENSGT00940000155404 #15	ENSGT00940000160844.b	ENSGT00950000183005.b.c.b #16	ENSGT00390000002019	ENSGT00940000161354 #17	ENSGT00940000159125 #18	ENSGT00940000154130.a.a.a #19	ENSGT00950000183047.c.a #20	ENSGT00940000160446.c #21	ENSGT00940000154063.C.a.b #22	ENSGT01060000248544.a.a.b.a.a #23	ENSGT00390000006744 #24	ENSGT00390000006244 #25	ENSGT00940000161972.d.a #26	ENSGT00940000161573 #27	ENSGT00950000183101.a.b.a #28	ENSGT00940000159428 #29	ENSGT00940000162419	ENSGT00940000156051.mc.a #30	ENSGT00440000038032.q #31	ENSGT00950000182993.B.b #32	ENSGT00390000014585 #33	ENSGT00390000005830 #34	ENSGT00730000110920.b.a.a #35	ENSGT00940000158800 #36
Pig-tailed macaque	MODERN SPECIES	76	ZNF358 (ENSMNEG00000037571)	TEX45 (ENSMNEG00000019465)	PEX11G (ENSMNEG00000038753)	ARHGEF18 (ENSMNEG00000007782)	ENSMNEG00000033125	INSR (ENSMNEG00000022660) #15	ZNF557 (ENSMNEG00000031152)	ENSMNEG00000029978 #16	ENSMNEG00000023531	ENSMNEG00000018748	ADGRE1 (ENSMNEG00000036876) #17	VAV1 (ENSMNEG00000033569) #18	SH2D3A (ENSMNEG00000043229) #19	TRIP10 (ENSMNEG00000032693) #20	ENSMNEG00000027173 #21	C3 (ENSMNEG00000039015) #22	TNFSF14 (ENSMNEG00000041885) #23	CD70 (ENSMNEG00000032223) #24	TNFSF9 (ENSMNEG00000032348) #25	TUBB4A (ENSMNEG00000038280) #26	DENND1C (ENSMNEG00000029798) #27	CRB3 (ENSMNEG00000040789) #28	SLC25A23 (ENSMNEG00000033667) #29	SLC25A41 (ENSMNEG00000031428)	KHSRP (ENSMNEG00000036982) #30	GTF2F1 (ENSMNEG00000038838) #31	PSPN (ENSMNEG00000039281) #32	ALKBH7 (ENSMNEG00000029223) #33	ENSMNEG00000041705	ACER1 (ENSMNEG00000029728) #35	MLLT1 (ENSMNEG00000031529) #36
Macaca_a	ANCESTRAL SPECIES	1	ENSGT00940000162948	ENSGT00390000014215	ENSGT00390000000427	ENSGT00940000157375	ENSGT00940000154146.b.b.b	ENSGT00940000155404 #15	ENSGT00940000160844.b	ENSGT00950000183005.b.c.b.g #16	ENSGT00950000183005.b.c.b.h #16	ENSGT00390000002019	ENSGT00940000161354 #17	ENSGT00940000159125 #18	ENSGT00940000154130.a.a.a #19	ENSGT00950000183047.c.a #20	ENSGT00940000160446.c #21	ENSGT00940000154063.C.a.b #22	ENSGT01060000248544.a.a.b.a.a #23	ENSGT00390000006744 #24	ENSGT00390000006244 #25	ENSGT00940000161972.d.a #26	ENSGT00940000161573 #27	ENSGT00950000183101.a.b.a #28	ENSGT00940000159428 #29	ENSGT00940000162419	ENSGT00940000156051.mc.a #30	ENSGT00440000038032.q #31	ENSGT00950000182993.B.b #32	ENSGT00390000014585 #33	ENSGT00390000005830 #34	ENSGT00730000110920.b.a.a #35	ENSGT01100000263508.A.d.e.a.b
Rhesus	MODERN SPECIES	10	ZNF358 (ENSMMUG00000060429)	TEX45 (ENSMMUG00000057890)	PEX11G (ENSMMUG00000055237)	ARHGEF18 (ENSMMUG00000028906)	INSR (ENSMMUG00000028907) #15	ENSMMUG00000057682	ZNF557 (ENSMMUG00000019966)	ENSMMUG00000028908 #16	ENSMMUG00000063988 #16	ENSMMUG00000005589	ADGRE1 (ENSMMUG00000001220) #17	VAV1 (ENSMMUG00000019314) #18	SH2D3A (ENSMMUG00000008699) #19	TRIP10 (ENSMMUG00000008697) #20	ENSMMUG00000008695 #21	C3 (ENSMMUG00000008693) #22	TNFSF14 (ENSMMUG00000051945) #23	CD70 (ENSMMUG00000011042) #24	TNFSF9 (ENSMMUG00000001985) #25	TUBB4A (ENSMMUG00000014216) #26	DENND1C (ENSMMUG00000005600) #27	CRB3 (ENSMMUG00000050193) #28	SLC25A23 (ENSMMUG00000005598) #29	SLC25A41 (ENSMMUG00000016526)	KHSRP (ENSMMUG00000005597) #30	PSPN (ENSMMUG00000053244) #32	ALKBH7 (ENSMMUG00000000054) #33	CLPP (ENSMMUG00000028914) #34	ACER1 (ENSMMUG00000005698) #35	ENSMMUG00000063389	MLLT1 (ENSMMUG00000005697) #36
Crab-eating macaque	MODERN SPECIES	10	ZNF358 (ENSMFAG00000048715)	TEX45 (ENSMFAG00000001714)	PEX11G (ENSMFAG00000032881)	ENSMFAG00000051122	ENSMFAG00000064817	ENSMFAG00000042620	INSR (ENSMFAG00000041609) #15	ZNF557 (ENSMFAG00000039721)	ENSMFAG00000036004 #16	ENSMFAG00000064065	ADGRE1 (ENSMFAG00000039564) #17	VAV1 (ENSMFAG00000039752) #18	SH2D3A (ENSMFAG00000002801) #19	TRIP10 (ENSMFAG00000039732) #20	GPR108 (ENSMFAG00000038700) #21	ENSMFAG00000044731 #22	TNFSF14 (ENSMFAG00000003750) #23	CD70 (ENSMFAG00000041094) #24	TUBB4A (ENSMFAG00000059050) #26	CRB3 (ENSMFAG00000040330) #28	DENND1C (ENSMFAG00000031978) #27	SLC25A23 (ENSMFAG00000039503) #29	ENSMFAG00000063742	KHSRP (ENSMFAG00000000292) #30	GTF2F1 (ENSMFAG00000003355) #31	ALKBH7 (ENSMFAG00000045978) #33	CLPP (ENSMFAG00000063171) #34	ACER1 (ENSMFAG00000043465) #35	ENSMFAG00000064713	MLLT1 (ENSMFAG00000039501) #36	ACSBG2 (ENSMFAG00000033353) #37
Vervet Monkey	MODERN SPECIES	25	PNPLA6 (ENSCSAG00000008640)	MCOLN1 (ENSCSAG00000008759)	ZNF358 (ENSCSAG00000018826)	TEX45 (ENSCSAG00000008787)	PEX11G (ENSCSAG00000008804)	ARHGEF18 (ENSCSAG00000008824)	INSR (ENSCSAG00000008965) #15	ZNF557 (ENSCSAG00000009087)	ENSCSAG00000009106 #16	ENSCSAG00000018825	ADGRE1 (ENSCSAG00000009172) #17	VAV1 (ENSCSAG00000009214) #18	SH2D3A (ENSCSAG00000009225) #19	TRIP10 (ENSCSAG00000009241) #20	GPR108 (ENSCSAG00000009304) #21	C3 (ENSCSAG00000009476) #22	TNFSF14 (ENSCSAG00000009528) #23	CD70 (ENSCSAG00000009543) #24	TNFSF9 (ENSCSAG00000009573) #25	TUBB4A (ENSCSAG00000009578) #26	DENND1C (ENSCSAG00000009587) #27	CRB3 (ENSCSAG00000009594) #28	SLC25A23 (ENSCSAG00000009602) #29	SLC25A41 (ENSCSAG00000009616)	KHSRP (ENSCSAG00000009626) #30	ENSCSAG00000009656	PSPN (ENSCSAG00000009668) #32	ALKBH7 (ENSCSAG00000009674) #33	CLPP (ENSCSAG00000009679) #34	ACER1 (ENSCSAG00000009688) #35	MLLT1 (ENSCSAG00000009698) #36
Rhinopithecus	ANCESTRAL SPECIES	5	ENSGT00940000159130	ENSGT00950000183036.b	ENSGT00940000162948	ENSGT00390000014215	ENSGT00390000000427	ENSGT00940000157375	ENSGT00940000154146.b.b.b	ENSGT00940000155404 #15	ENSGT00940000160844.b	ENSGT00950000183005.b.c.b #16	ENSGT00940000161354 #17	ENSGT00940000159125 #18	ENSGT00940000154130.a.a.a #19	ENSGT00950000183047.c.a #20	ENSGT00940000160446.c #21	ENSGT00940000154063.C.a.b #22	ENSGT01060000248544.a.a.b.a.a #23	ENSGT00390000006744 #24	ENSGT00440000033329.a.a.b.c.b	ENSGT00390000006244 #25	ENSGT00940000161972.d.a #26	ENSGT00940000161573 #27	ENSGT00950000183101.a.b.a #28	ENSGT00940000159428 #29	ENSGT00940000162419	ENSGT00940000156051.mc.a #30	ENSGT00440000038032.q #31	ENSGT00950000182993.B.b #32	ENSGT00390000014585 #33	ENSGT00390000005830 #34	ENSGT00940000167406
Golden snub-nosed monkey	MODERN SPECIES	1318												VAV1 (ENSRROG00000030844) #18	SH2D3A (ENSRROG00000040767) #19	TRIP10 (ENSRROG00000037565) #20	ENSRROG00000038025 #21	C3 (ENSRROG00000044340) #22	TNFSF14 (ENSRROG00000041901) #23	CD70 (ENSRROG00000040655) #24	ENSRROG00000007343	TNFSF9 (ENSRROG00000043525) #25	TUBB4A (ENSRROG00000010011) #26	DENND1C (ENSRROG00000036222) #27	CRB3 (ENSRROG00000035164) #28	SLC25A23 (ENSRROG00000009609) #29	SLC25A41 (ENSRROG00000044292)	KHSRP (ENSRROG00000031782) #30	ENSRROG00000020433 #31	ALKBH7 (ENSRROG00000043210) #33	CLPP (ENSRROG00000042048) #34	ACER1 (ENSRROG00000022472) #35	MLLT1 (ENSRROG00000042162) #36
Black snub-nosed monkey	MODERN SPECIES	631	ZNF358 (ENSRBIG00000037697)	TEX45 (ENSRBIG00000035566)	ENSRBIG00000019450	PEX11G (ENSRBIG00000000494)	ARHGEF18 (ENSRBIG00000040638)	ENSRBIG00000030984	INSR (ENSRBIG00000036045) #15	ZNF557 (ENSRBIG00000040024)	ENSRBIG00000041526	ADGRE1 (ENSRBIG00000031436) #17	ENSRBIG00000016719	VAV1 (ENSRBIG00000040884) #18	SH2D3A (ENSRBIG00000033277) #19	TRIP10 (ENSRBIG00000030391) #20	ENSRBIG00000044563 #21	C3 (ENSRBIG00000027932) #22	ENSRBIG00000036454 #23	CD70 (ENSRBIG00000042145) #24	ENSRBIG00000035725	TNFSF9 (ENSRBIG00000029859) #25	TUBB4A (ENSRBIG00000028889) #26	DENND1C (ENSRBIG00000036859) #27	CRB3 (ENSRBIG00000019680) #28	SLC25A23 (ENSRBIG00000031632) #29	KHSRP (ENSRBIG00000041605) #30
Platyrrhini	ANCESTRAL SPECIES	16	ENSGT00940000162948	ENSGT00390000014215	ENSGT00390000000427	ENSGT00940000157375	ENSGT00940000154146.b.b.b	ENSGT00940000155404 #15	ENSGT00940000160844.b	ENSGT00950000183005.b.c.b.m #16	ENSGT00950000183005.b.c.b.n #16	ENSGT00940000162163	ENSGT00940000161354 #17	ENSGT00940000159125 #18	ENSGT00940000154130.a.a.a #19	ENSGT00950000183047.c.a #20	ENSGT00940000160446 #21	ENSGT00940000154063.C.a.b #22	ENSGT01060000248544.a.a.b.a.a #23	ENSGT00390000006744 #24	ENSGT00390000006244 #25	ENSGT00940000161972 #26	ENSGT00940000161573 #27	ENSGT00950000183101.a.b.a #28	ENSGT00940000159428 #29	ENSGT00940000162419	ENSGT00940000156051 #30	ENSGT00440000038032.s #31	ENSGT00950000182993.B.b #32	ENSGT00390000014585.k #33	ENSGT00390000005830.v #34	ENSGT00730000110920.b.a.a #35	ENSGT00940000158800 #36
Cebidae	ANCESTRAL SPECIES	20	ENSGT00950000183036.b	ENSGT00940000162948	ENSGT00390000014215	ENSGT00390000000427	ENSGT00940000157375	ENSGT00940000154146.b.b.b	ENSGT00940000155404 #15	ENSGT00940000160844.b	ENSGT00950000183005.b.c.b.m #16	ENSGT00950000183005.b.c.b.n #16	ENSGT00940000161354 #17	ENSGT00940000159125 #18	ENSGT00940000154130.a.a.a #19	ENSGT00950000183047.c.a #20	ENSGT00940000160446 #21	ENSGT00940000154063.C.a.b #22	ENSGT01060000248544.a.a.b.a.a #23	ENSGT00390000006744 #24	ENSGT00390000006244 #25	ENSGT00940000161972 #26	ENSGT00940000161573 #27	ENSGT00950000183101.a.b.a #28	ENSGT00940000159428 #29	ENSGT00940000162419	ENSGT00940000156051 #30	ENSGT00440000038032.s #31	ENSGT00950000182993.B.b #32	ENSGT00390000014585.k #33	ENSGT00390000005830.v #34	ENSGT00730000110920.b.a.a #35	ENSGT00940000158800 #36
Cebidae_a	ANCESTRAL SPECIES	9	ENSGT00940000159130	ENSGT00950000183036.b	ENSGT00940000162948	ENSGT00390000014215	ENSGT00390000000427	ENSGT00940000157375	ENSGT00940000154146.b.b.b	ENSGT00940000155404 #15	ENSGT00940000160844.b	ENSGT00950000183005.b.c.b.m #16	ENSGT00940000161354 #17	ENSGT00940000159125 #18	ENSGT00940000154130.a.a.a #19	ENSGT00950000183047.c.a #20	ENSGT00940000160446 #21	ENSGT00940000154063.C.a.b #22	ENSGT01060000248544.a.a.b.a.a #23	ENSGT00390000006744 #24	ENSGT00390000006244 #25	ENSGT00940000161972 #26	ENSGT00940000161573 #27	ENSGT00950000183101.a.b.a #28	ENSGT00940000159428 #29	ENSGT00940000162419	ENSGT00940000156051 #30	ENSGT00440000038032.s #31	ENSGT00950000182993.B.b #32	ENSGT00390000014585.k #33	ENSGT00390000005830.v #34	ENSGT00730000110920.b.a.a #35	ENSGT00940000158800 #36
Capuchin	MODERN SPECIES	53	IL20RB (ENSCCAG00000025761)	NCK1 (ENSCCAG00000027762)	SLC35G2 (ENSCCAG00000017946)	STAG1 (ENSCCAG00000037750)	PCCB (ENSCCAG00000034624)	INSR (ENSCCAG00000023219) #15	ZNF557 (ENSCCAG00000035545)	ENSCCAG00000019848 #16	ENSCCAG00000023589 #16	ENSCCAG00000026975	ADGRE1 (ENSCCAG00000035307) #17	VAV1 (ENSCCAG00000033162) #18	SH2D3A (ENSCCAG00000024880) #19	TRIP10 (ENSCCAG00000026415) #20	GPR108 (ENSCCAG00000030348) #21	C3 (ENSCCAG00000029672) #22	TNFSF14 (ENSCCAG00000028792) #23	CD70 (ENSCCAG00000029093) #24	TNFSF9 (ENSCCAG00000029091) #25	TUBB4A (ENSCCAG00000013999) #26	DENND1C (ENSCCAG00000034905) #27	CRB3 (ENSCCAG00000023680) #28	SLC25A23 (ENSCCAG00000022370) #29	SLC25A41 (ENSCCAG00000026520)	KHSRP (ENSCCAG00000025297) #30	ENSCCAG00000037309 #31	PSPN (ENSCCAG00000025813) #32	ALKBH7 (ENSCCAG00000025999) #33	CLPP (ENSCCAG00000037133) #34	ENSCCAG00000030606	ACER1 (ENSCCAG00000030282) #35
Bolivian squirrel monkey	MODERN SPECIES	150	MCOLN1 (ENSSBOG00000010279)	ZNF358 (ENSSBOG00000011944)	TEX45 (ENSSBOG00000033663)	PEX11G (ENSSBOG00000022122)	ARHGEF18 (ENSSBOG00000033367)	ENSSBOG00000030740	INSR (ENSSBOG00000023439) #15	ENSSBOG00000019851 #16	ENSSBOG00000031783 #16	ADGRE1 (ENSSBOG00000035948) #17	ENSSBOG00000032976	VAV1 (ENSSBOG00000034405) #18	SH2D3A (ENSSBOG00000017503) #19	TRIP10 (ENSSBOG00000007356) #20	GPR108 (ENSSBOG00000034952) #21	C3 (ENSSBOG00000024226) #22	TNFSF14 (ENSSBOG00000023172) #23	CD70 (ENSSBOG00000032929) #24	TNFSF9 (ENSSBOG00000036008) #25	TUBB4A (ENSSBOG00000019437) #26	DENND1C (ENSSBOG00000030628) #27	CRB3 (ENSSBOG00000030526) #28	SLC25A23 (ENSSBOG00000033178) #29	SLC25A41 (ENSSBOG00000020009)	KHSRP (ENSSBOG00000034871) #30	GTF2F1 (ENSSBOG00000033946) #31	PSPN (ENSSBOG00000031809) #32	ALKBH7 (ENSSBOG00000024563) #33	CLPP (ENSSBOG00000036193) #34	ACER1 (ENSSBOG00000028157) #35	MLLT1 (ENSSBOG00000025950) #36
Marmoset	MODERN SPECIES	14	MCOLN1 (ENSCJAG00000008429)	ZNF358 (ENSCJAG00000045015)	TEX45 (ENSCJAG00000008413)	PEX11G (ENSCJAG00000067505)	ARHGEF18 (ENSCJAG00000008397)	ENSCJAG00000008391	INSR (ENSCJAG00000016091) #15	ENSCJAG00000085022	ENSCJAG00000016144 #16	ENSCJAG00000038679 #16	ADGRE1 (ENSCJAG00000016187) #17	VAV1 (ENSCJAG00000016236) #18	SH2D3A (ENSCJAG00000036290) #19	TRIP10 (ENSCJAG00000016334) #20	GPR108 (ENSCJAG00000016419) #21	C3 (ENSCJAG00000016466) #22	TNFSF14 (ENSCJAG00000085938) #23	CD70 (ENSCJAG00000081455) #24	TNFSF9 (ENSCJAG00000016530) #25	TUBB4A (ENSCJAG00000016534) #26	DENND1C (ENSCJAG00000016543) #27	CRB3 (ENSCJAG00000044939) #28	SLC25A23 (ENSCJAG00000016577) #29	KHSRP (ENSCJAG00000016627) #30	GTF2F1 (ENSCJAG00000016669) #31	PSPN (ENSCJAG00000016688) #32	ALKBH7 (ENSCJAG00000016691) #33	CLPP (ENSCJAG00000046904) #34	ACER1 (ENSCJAG00000016705) #35	MLLT1 (ENSCJAG00000044059) #36	ACSBG2 (ENSCJAG00000016734) #37
Mas night monkey	MODERN SPECIES	937	ZNF358 (ENSANAG00000025717)	TEX45 (ENSANAG00000027070)	PEX11G (ENSANAG00000026711)	ARHGEF18 (ENSANAG00000022067)	ENSANAG00000035526	INSR (ENSANAG00000021860) #15	ZNF557 (ENSANAG00000029396)	ENSANAG00000025999 #16	ENSANAG00000027989 #16	ENSANAG00000028071	ADGRE1 (ENSANAG00000034495) #17	VAV1 (ENSANAG00000020752) #18	SH2D3A (ENSANAG00000023272) #19	TRIP10 (ENSANAG00000025154) #20	GPR108 (ENSANAG00000028875) #21	C3 (ENSANAG00000029174) #22	TNFSF14 (ENSANAG00000020878) #23	CD70 (ENSANAG00000037767) #24	TNFSF9 (ENSANAG00000028047) #25	TUBB4A (ENSANAG00000035357) #26	DENND1C (ENSANAG00000026774) #27	SLC25A23 (ENSANAG00000037773) #29	SLC25A41 (ENSANAG00000021884)	KHSRP (ENSANAG00000027617) #30	ENSANAG00000035546 #31	PSPN (ENSANAG00000027968) #32	ALKBH7 (ENSANAG00000035316) #33	CLPP (ENSANAG00000025005) #34	ACER1 (ENSANAG00000037792) #35	MLLT1 (ENSANAG00000034543) #36	ACSBG2 (ENSANAG00000021889) #37
Tarsier	MODERN SPECIES	1206																C3 (ENSTSYG00000001086) #22	TNFSF14 (ENSTSYG00000036317) #23
Euarchontoglires_A	ANCESTRAL SPECIES	24												ENSGT00940000159125 #18	ENSGT00940000154130.a.a.a #19	ENSGT00950000183047.c.a #20	ENSGT00940000160446 #21	ENSGT00940000154063.C.a.b #22	ENSGT01060000248544.a.a.b.a.a #23	ENSGT00390000006744 #24	ENSGT00390000006244 #25	ENSGT00940000161972 #26	ENSGT00940000161573 #27	ENSGT00950000183101.a.b.a #28	ENSGT00940000159428 #29	ENSGT00940000162419	ENSGT00940000156051 #30	ENSGT00940000163693	ENSGT00440000038032 #31	ENSGT00950000182993.B.b #32	ENSGT00390000014585 #33	ENSGT00390000005830 #34	ENSGT00730000110920.b.a.a #35
Glires	ANCESTRAL SPECIES	25												ENSGT00940000159125 #18	ENSGT00940000154130.a.a.a #19	ENSGT00950000183047.c.a #20	ENSGT00940000160446 #21	ENSGT00940000154063.C.a.b #22	ENSGT01060000248544.a.a.b.a.a #23	ENSGT00390000006744 #24	ENSGT00390000006244 #25	ENSGT00940000161972 #26	ENSGT00940000161573 #27	ENSGT00950000183101.a.b.a #28	ENSGT00940000159428 #29	ENSGT00940000156051 #30	ENSGT00940000162419	ENSGT00940000163693	ENSGT00440000038032 #31	ENSGT00950000182993.B.b #32	ENSGT00390000014585 #33	ENSGT00390000005830 #34	ENSGT00730000110920.b.a.a #35
Rodentia	ANCESTRAL SPECIES	17	ENSGT00950000183036.b	ENSGT00940000162948	ENSGT00390000014215	ENSGT00390000000427	ENSGT00940000157375	ENSGT00940000154146.b.b.b	ENSGT00940000155404 #15	ENSGT00940000154431.f	ENSGT00950000183069.b.b.a.a	ENSGT00940000162163	ENSGT00940000161354 #17	ENSGT00940000159125 #18	ENSGT00940000154130.a.a.a #19	ENSGT00950000183047.c.a #20	ENSGT00940000160446 #21	ENSGT00940000154063.C.a.b #22	ENSGT01060000248544.a.a.b.a.a #23	ENSGT00390000006744 #24	ENSGT00390000006244 #25	ENSGT00940000161972 #26	ENSGT00940000161573 #27	ENSGT00950000183101.a.b.a #28	ENSGT00940000159428 #29	ENSGT00940000162419	ENSGT00940000156051 #30	ENSGT00940000163693	ENSGT00440000038032 #31	ENSGT00950000182993.B.b #32	ENSGT00390000014585 #33	ENSGT00390000005830 #34	ENSGT00730000110920.b.a.a #35
Rodentia_A	ANCESTRAL SPECIES	16	ENSGT00950000183036.b	ENSGT00940000162948	ENSGT00390000014215	ENSGT00390000000427	ENSGT00940000157375	ENSGT00940000154146.b.b.b	ENSGT00940000155404 #15	ENSGT00950000182788.a.b.b.b.e	ENSGT00950000183069.b.b.a.a	ENSGT00940000162163	ENSGT00940000161354 #17	ENSGT00940000159125 #18	ENSGT00940000154130.a.a.a #19	ENSGT00950000183047.c.a #20	ENSGT00940000160446 #21	ENSGT00940000154063.C.a.b #22	ENSGT01060000248544.a.a.b.a.a #23	ENSGT00390000006744 #24	ENSGT00390000006244 #25	ENSGT00940000161972 #26	ENSGT00940000161573 #27	ENSGT00950000183101.a.b.a #28	ENSGT00940000159428 #29	ENSGT00940000162419	ENSGT00940000156051 #30	ENSGT00940000163693	ENSGT00440000038032 #31	ENSGT00950000182993.B.b #32	ENSGT00390000014585 #33	ENSGT00390000005830 #34	ENSGT00730000110920.b.a.a #35
Hystricomorpha	ANCESTRAL SPECIES	19	ENSGT00940000161935	ENSGT00940000153116.C.b	ENSGT00510000047770.c.a	ENSGT00940000160389	ENSGT00940000160257	ENSGT00390000005147	ENSGT00940000159680	ENSGT00390000000053	ENSGT00390000016735	ENSGT00950000182755.b.a.a.a.a.a.a.b	ENSGT00940000162163	ENSGT00940000159125 #18	ENSGT00940000154130.a.a.a #19	ENSGT00950000183047.c.a #20	ENSGT00940000160446 #21	ENSGT00940000154063.C.a.b #22	ENSGT01060000248544.a.a.b.a.a #23	ENSGT00390000006744 #24	ENSGT00940000161972 #26	ENSGT00940000161573 #27	ENSGT00950000183101.a.b.a #28	ENSGT00940000159428 #29	ENSGT00940000162419	ENSGT00940000156051 #30	ENSGT00940000163693	ENSGT00440000038032 #31	ENSGT00950000182993.B.b #32	ENSGT00390000014585 #33	ENSGT00390000005830 #34	ENSGT00730000110920.b.a.a #35	ENSGT00940000158800.b #36
Hystricomorpha_a	ANCESTRAL SPECIES	15	ENSGT00940000161935	ENSGT00940000153116.C.b	ENSGT00510000047770.c.a	ENSGT00940000160389	ENSGT00940000160257	ENSGT00390000005147	ENSGT00940000159680	ENSGT00390000000053	ENSGT00390000016735	ENSGT00950000182755.b.a.a.a.a.a.a.b	ENSGT00940000162163	ENSGT00940000159125 #18	ENSGT00940000154130.a.a.a #19	ENSGT00950000183047.c.a #20	ENSGT00940000160446 #21	ENSGT00940000154063.C.a.b #22	ENSGT01060000248544.a.a.b.a.a #23	ENSGT00390000006744 #24	ENSGT00940000161972 #26	ENSGT00940000161573 #27	ENSGT00950000183101.a.b.a #28	ENSGT00940000159428 #29	ENSGT00940000162419	ENSGT00940000156051 #30	ENSGT00940000163693	ENSGT00440000038032 #31	ENSGT00950000182993.B.b #32	ENSGT00390000014585 #33	ENSGT00390000005830 #34	ENSGT00730000110920.b.a.a #35	ENSGT00940000158800.b #36
Hystricomorpha_b	ANCESTRAL SPECIES	17	ENSGT00940000161935	ENSGT00940000153116.C.b	ENSGT00510000047770.c.a	ENSGT00940000160389	ENSGT00940000160257	ENSGT00390000005147	ENSGT00940000159680	ENSGT00390000000053	ENSGT00390000016735	ENSGT00950000182755.b.a.a.a.a.a.a.b	ENSGT00940000162163	ENSGT00940000159125 #18	ENSGT00940000154130.a.a.a #19	ENSGT00950000183047.c.a #20	ENSGT00940000160446 #21	ENSGT00940000154063.C.a.b #22	ENSGT01060000248544.a.a.b.a.a #23	ENSGT00390000006744 #24	ENSGT00940000161972 #26	ENSGT00940000161573 #27	ENSGT00950000183101.a.b.a #28	ENSGT00940000159428 #29	ENSGT00940000162419	ENSGT00940000156051 #30	ENSGT00940000163693	ENSGT00440000038032 #31	ENSGT00950000182993.B.b #32	ENSGT00390000014585 #33	ENSGT00390000005830 #34	ENSGT00730000110920.b.a.a #35	ENSGT00940000158800.b #36
Long-tailed chinchilla	MODERN SPECIES	202	RGL3 (ENSCLAG00000008655)	ODAD3 (ENSCLAG00000008412)	PRKCSH (ENSCLAG00000011549)	ELAVL3 (ENSCLAG00000016404)	ZNF653 (ENSCLAG00000016100)	ECSIT (ENSCLAG00000013338)	CNN1 (ENSCLAG00000013547)	ELOF1 (ENSCLAG00000013181)	ACP5 (ENSCLAG00000013793)	ZNF709 (ENSCLAG00000014910)	ENSCLAG00000011723	VAV1 (ENSCLAG00000008423) #18	SH2D3A (ENSCLAG00000009886) #19	TRIP10 (ENSCLAG00000009696) #20	GPR108 (ENSCLAG00000012060) #21	C3 (ENSCLAG00000008464) #22	TNFSF14 (ENSCLAG00000008813) #23	ENSCLAG00000009197 #24	ENSCLAG00000009403 #24	TUBB4A (ENSCLAG00000008831) #26	DENND1C (ENSCLAG00000012303) #27	ENSCLAG00000014016 #28	SLC25A23 (ENSCLAG00000015826) #29	SLC25A41 (ENSCLAG00000006414)	KHSRP (ENSCLAG00000007309) #30	ENSCLAG00000007910	GTF2F1 (ENSCLAG00000008779) #31	PSPN (ENSCLAG00000016653) #32	ALKBH7 (ENSCLAG00000017244) #33	CLPP (ENSCLAG00000009974) #34	ACER1 (ENSCLAG00000011663) #35
Degu	MODERN SPECIES	91	RGL3 (ENSODEG00000015605)	ODAD3 (ENSODEG00000015468)	PRKCSH (ENSODEG00000015657)	ELAVL3 (ENSODEG00000015790)	ZNF653 (ENSODEG00000015477)	ECSIT (ENSODEG00000016279)	CNN1 (ENSODEG00000016009)	ENSODEG00000015688	ACP5 (ENSODEG00000015797)	ENSODEG00000020329	ENSODEG00000015977	ENSODEG00000020296	VAV1 (ENSODEG00000015478) #18	TRIP10 (ENSODEG00000015929) #20	GPR108 (ENSODEG00000016288) #21	C3 (ENSODEG00000015506) #22	TNFSF14 (ENSODEG00000015436) #23	ENSODEG00000020289	ENSODEG00000015175	TUBB4A (ENSODEG00000015772) #26	ENSODEG00000015746 #27	CRB3 (ENSODEG00000015295) #28	SLC25A23 (ENSODEG00000014916) #29	SLC25A41 (ENSODEG00000015990)	KHSRP (ENSODEG00000015021) #30	ENSODEG00000015969	GTF2F1 (ENSODEG00000014900) #31	PSPN (ENSODEG00000014761) #32	ALKBH7 (ENSODEG00000015141) #33	CLPP (ENSODEG00000015485) #34	ACER1 (ENSODEG00000015726) #35
Guinea pig	MODERN SPECIES	359																ENSCPOG00000004199 #22	TNFSF14 (ENSCPOG00000038693) #23
Sciuridae	ANCESTRAL SPECIES	23	ENSGT00940000162948	ENSGT00390000014215	ENSGT00390000000427	ENSGT00940000157375	ENSGT00940000154146.b.b.b	ENSGT00940000155404 #15	ENSGT00950000183069.b.b.a.a.a	ENSGT00950000183069.b.a.b	ENSGT00950000183069.b.b.a.a.b	ENSGT00940000162163	ENSGT00940000161354 #17	ENSGT00940000159125 #18	ENSGT00940000154130.a.a.a #19	ENSGT00950000183047.c.a #20	ENSGT00940000160446 #21	ENSGT00940000154063.C.a.b #22	ENSGT01060000248544.a.a.b.a.a #23	ENSGT00390000006744 #24	ENSGT00390000006244 #25	ENSGT00940000161972 #26	ENSGT00940000161573 #27	ENSGT00950000183101.a.b.a #28	ENSGT00940000159428 #29	ENSGT00940000162419	ENSGT00940000156051 #30	ENSGT00940000163693	ENSGT00440000038032 #31	ENSGT00950000182993.B.b #32	ENSGT00390000014585 #33	ENSGT00390000005830 #34	ENSGT00730000110920.b.a.a #35
Eurasian red squirrel	MODERN SPECIES	7	ENSSVLG00005025569	INSR (ENSSVLG00005025555) #15	ENSSVLG00005025544	ENSSVLG00005025504	ENSSVLG00005025471	ENSSVLG00005025459	ENSSVLG00005025293	ENSSVLG00005025148	ENSSVLG00005025094	ENSSVLG00005025028	ADGRE1 (ENSSVLG00005024961) #17	VAV1 (ENSSVLG00005024496) #18	SH2D3A (ENSSVLG00005024392) #19	TRIP10 (ENSSVLG00005024340) #20	GPR108 (ENSSVLG00005024305) #21	C3 (ENSSVLG00005023985) #22	TNFSF14 (ENSSVLG00005023899) #23	CD70 (ENSSVLG00005023872) #24	TNFSF9 (ENSSVLG00005023843) #25	TUBB4A (ENSSVLG00005023819) #26	DENND1C (ENSSVLG00005023643) #27	CRB3 (ENSSVLG00005023581) #28	SLC25A23 (ENSSVLG00005023541) #29	SLC25A41 (ENSSVLG00005023479)	KHSRP (ENSSVLG00005023444) #30	ENSSVLG00005023383	GTF2F1 (ENSSVLG00005023301) #31	PSPN (ENSSVLG00005023279) #32	ALKBH7 (ENSSVLG00005023240) #33	CLPP (ENSSVLG00005023216) #34	ACER1 (ENSSVLG00005023163) #35
Rodentia_B	ANCESTRAL SPECIES	28	ENSGT00940000158995	ENSGT00940000154595.n	ENSGT00530000063460.B	ENSGT00390000006876	ENSGT00940000158870	ENSGT00940000158404	ENSGT00940000164108.b	ENSGT00940000163012	ENSGT00950000183069.b.b.a.b	ENSGT00940000162163	ENSGT00940000161354 #17	ENSGT00940000159125 #18	ENSGT00940000154130.a.a.a #19	ENSGT00950000183047.c.a #20	ENSGT00940000160446 #21	ENSGT00940000154063.C.a.b #22	ENSGT01060000248544.a.a.b.a.a #23	ENSGT00390000006744 #24	ENSGT00390000006244 #25	ENSGT00940000161972 #26	ENSGT00940000161573 #27	ENSGT00950000183101.a.b.a #28	ENSGT00940000159428 #29	ENSGT00940000162419	ENSGT00940000156051 #30	ENSGT00940000163693	ENSGT00440000038032 #31	ENSGT00950000182993.B.b #32	ENSGT00390000014585 #33	ENSGT00390000005830 #34	ENSGT00730000110920.b.a.a #35
Myomorpha	ANCESTRAL SPECIES	27	ENSGT00940000158995	ENSGT00940000154595.n	ENSGT00530000063460.B	ENSGT00390000006876	ENSGT00940000158870	ENSGT00940000158404	ENSGT00940000164108.b	ENSGT00940000163012	ENSGT00950000183069.b.b.a.b.c.a.b.b	ENSGT00940000162163	ENSGT00940000161354 #17	ENSGT00940000159125 #18	ENSGT00940000154130.a.a.a #19	ENSGT00950000183047.c.a #20	ENSGT00940000160446 #21	ENSGT00940000154063.C.a.b #22	ENSGT01060000248544.a.a.b.a.a #23	ENSGT00390000006744 #24	ENSGT00390000006244 #25	ENSGT00940000161972 #26	ENSGT00940000161573 #27	ENSGT00950000183101.a.b.a #28	ENSGT00940000159428 #29	ENSGT00940000162419	ENSGT00940000156051 #30	ENSGT00940000163693	ENSGT00440000038032 #31	ENSGT00950000182993.B.b #32	ENSGT00390000014585 #33	ENSGT00390000005830 #34	ENSGT00730000110920.b.a.a #35
Muroidea	ANCESTRAL SPECIES	32	ENSGT00940000158995	ENSGT00940000154595.n	ENSGT00530000063460.B	ENSGT00390000006876	ENSGT00940000158870	ENSGT00940000158404	ENSGT00940000164108.b	ENSGT00940000163012.g	ENSGT00950000183069.b.b.a.b.c.a.b.b	ENSGT00940000162163	ENSGT00940000161354 #17	ENSGT00940000159125 #18	ENSGT00940000154130.a.a.a #19	ENSGT00950000183047.c.a #20	ENSGT00940000160446 #21	ENSGT00940000154063.C.a.b #22	ENSGT01060000248544.a.a.b.a.a #23	ENSGT00390000006744 #24	ENSGT00390000006244 #25	ENSGT00940000161972 #26	ENSGT00940000161573 #27	ENSGT00950000183101.a.b.a #28	ENSGT00940000159428 #29	ENSGT00940000162419	ENSGT00940000156051 #30	ENSGT00940000163693	ENSGT00440000038032 #31	ENSGT00950000182993.B.b #32	ENSGT00390000014585 #33	ENSGT00390000005830 #34	ENSGT00730000110920.b.a.a #35
Muroidea_A	ANCESTRAL SPECIES	25	ENSGT00940000154595.n	ENSGT00530000063460.B	ENSGT00390000006876	ENSGT00940000158870	ENSGT00940000158404	ENSGT00940000164108.b	ENSGT00940000163012.g	ENSGT00950000183069.b.b.a.b.c.a.b.b	ENSGT00390000018285.b	ENSGT00940000162163	ENSGT00940000161354 #17	ENSGT00940000159125 #18	ENSGT00940000154130.a.a.a #19	ENSGT00950000183047.c.a #20	ENSGT00940000160446 #21	ENSGT00940000154063.C.a.b #22	ENSGT01060000248544.a.a.b.a.a #23	ENSGT00390000006744 #24	ENSGT00390000006244 #25	ENSGT00940000161972 #26	ENSGT00940000161573 #27	ENSGT00950000183101.a.b.a #28	ENSGT00940000159428 #29	ENSGT00940000162419	ENSGT00940000156051 #30	ENSGT00940000163693	ENSGT00440000038032 #31	ENSGT00950000182993.B.b #32	ENSGT00390000014585 #33	ENSGT00390000005830 #34	ENSGT00730000110920.b.a.a #35
Cricetidae	ANCESTRAL SPECIES	25	ENSGT00940000158995	ENSGT00940000154595.n	ENSGT00530000063460.B	ENSGT00390000006876	ENSGT00940000158870	ENSGT00940000158404	ENSGT00940000163012.g	ENSGT00950000183069.b.b.a.b.c.a.b.b	ENSGT00390000018285.b	ENSGT00940000162163	ENSGT00940000161354 #17	ENSGT00940000159125 #18	ENSGT00940000154130.a.a.a #19	ENSGT00950000183047.c.a #20	ENSGT00940000160446 #21	ENSGT00940000154063.C.a.b #22	ENSGT01060000248544.a.a.b.a.a #23	ENSGT00390000006744 #24	ENSGT00390000006244 #25	ENSGT00940000161972 #26	ENSGT00940000161573 #27	ENSGT00950000183101.a.b.a #28	ENSGT00940000159428 #29	ENSGT00940000162419	ENSGT00940000156051 #30	ENSGT00940000163693	ENSGT00440000038032 #31	ENSGT00950000182993.B.b #32	ENSGT00390000014585 #33	ENSGT00390000005830 #34	ENSGT00730000110920.b.a.a #35
Cricetinae	ANCESTRAL SPECIES	4	ENSGT00940000161659	ENSGT00940000158995	ENSGT00940000154595.n	ENSGT00530000063460.B	ENSGT00390000006876	ENSGT00940000158870	ENSGT00940000158404	ENSGT00940000163012.g	ENSGT00950000183069.b.b.a.b.c.a.b.b	ENSGT00390000018285.b	ENSGT00940000162163	ENSGT00940000161354 #17	ENSGT00940000159125 #18	ENSGT00950000183047.c.a #20	ENSGT00940000160446 #21	ENSGT00940000154063.C.a.b #22	ENSGT01060000248544.a.a.b.a.a #23	ENSGT00390000006744 #24	ENSGT00390000006244 #25	ENSGT00940000161972 #26	ENSGT00940000161573 #27	ENSGT00950000183101.a.b.a #28	ENSGT00940000159428 #29	ENSGT00940000162419	ENSGT00940000156051 #30	ENSGT00940000163693	ENSGT00440000038032 #31	ENSGT00950000182993.B.b #32	ENSGT00390000014585 #33	ENSGT00390000005830 #34	ENSGT00730000110920.b.a.a #35
Chinese hamster chok1gshd	MODERN SPECIES	2	Rab11b (ENSCGRG00001013827)	Marchf2 (ENSCGRG00001014555)	ENSCGRG00001012021	Pram1 (ENSCGRG00001016954)	Zfp414 (ENSCGRG00001019364)	Myo1f (ENSCGRG00001014051)	Adamts10 (ENSCGRG00001018715)	Actl9 (ENSCGRG00001008637)	ENSCGRG00001015185	Pot1b (ENSCGRG00001024775)	Adgre4 (ENSCGRG00001002286)	Adgre1 (ENSCGRG00001013011) #17	Vav1 (ENSCGRG00001017169) #18	Trip10 (ENSCGRG00001018563) #20	Gpr108 (ENSCGRG00001020593) #21	C3 (ENSCGRG00001005133) #22	Tnfsf14 (ENSCGRG00001017618) #23	Cd70 (ENSCGRG00001022682) #24	ENSCGRG00001022936 #25	Tubb4a (ENSCGRG00001001011) #26	Dennd1c (ENSCGRG00001020022) #27	Crb3 (ENSCGRG00001021736) #28	Slc25a23 (ENSCGRG00001023449) #29	Slc25a41 (ENSCGRG00001000917)	Khsrp (ENSCGRG00001011031) #30	Gm17949 (ENSCGRG00001006952)	Gtf2f1 (ENSCGRG00001006209) #31	Pspn (ENSCGRG00001017826) #32	Alkbh7 (ENSCGRG00001019380) #33	Clpp (ENSCGRG00001019808) #34	Acer1 (ENSCGRG00001016857) #35
Golden Hamster	MODERN SPECIES	730	Pram1 (ENSMAUG00000013923)	Zfp414 (ENSMAUG00000015759)	Myo1f (ENSMAUG00000002414)	Adamts10 (ENSMAUG00000012826)	Actl9 (ENSMAUG00000004280)	ENSMAUG00000017033	ENSMAUG00000012218	ENSMAUG00000017172	Pot1b (ENSMAUG00000020767)	Adgre4 (ENSMAUG00000008688)	ENSMAUG00000007845	Adgre1 (ENSMAUG00000000651) #17	Vav1 (ENSMAUG00000021145) #18	Trip10 (ENSMAUG00000005828) #20	ENSMAUG00000020000 #21	C3 (ENSMAUG00000013599) #22	Tnfsf14 (ENSMAUG00000020967) #23	ENSMAUG00000015229	Cd70 (ENSMAUG00000019101) #24	ENSMAUG00000021205 #25	Tubb4a (ENSMAUG00000017901) #26	Dennd1c (ENSMAUG00000006409) #27	Crb3 (ENSMAUG00000019988) #28	ENSMAUG00000000871 #29	Slc25a41 (ENSMAUG00000014724)	Khsrp (ENSMAUG00000018966) #30	Gm17949 (ENSMAUG00000018260)	ENSMAUG00000015346 #31	Pspn (ENSMAUG00000019121) #32	Alkbh7 (ENSMAUG00000000800) #33	Clpp (ENSMAUG00000021469) #34
Cricetidae_B	ANCESTRAL SPECIES	27											ENSGT00940000161354 #17	ENSGT00940000159125 #18	ENSGT00940000154130.a.a.a #19	ENSGT00950000183047.c.a #20	ENSGT00940000160446 #21	ENSGT00940000154063.C.a.b #22	ENSGT01060000248544.a.a.b.a.a #23	ENSGT00390000006744 #24	ENSGT00390000006244 #25	ENSGT00940000161972 #26	ENSGT00940000161573 #27	ENSGT00950000183101.a.b.a #28	ENSGT00940000159428 #29	ENSGT00940000162419	ENSGT00940000156051 #30	ENSGT00940000163693	ENSGT00440000038032 #31	ENSGT00950000182993.B.b #32	ENSGT00390000014585 #33	ENSGT00390000005830 #34	ENSGT00730000110920.b.a.a #35
Northern American deer mouse	DUPLICATION
Northern American deer mouse	MODERN SPECIES	14	Ccdc105 (ENSPEMG00000008931)	ENSPEMG00000015450	ENSPEMG00000009495	Or7a36 (ENSPEMG00000011041)	ENSPEMG00000008828	ENSPEMG00000008518	2610008E11Rik (ENSPEMG00000029764)	ENSPEMG00000030002	ENSPEMG00000028855	ENSPEMG00000008525	Adgre1 (ENSPEMG00000013357) #17	Vav1 (ENSPEMG00000015943) #18	ENSPEMG00000031058 #19	Trip10 (ENSPEMG00000017394) #20	Gpr108 (ENSPEMG00000030315) #21	ENSPEMG00000001526 #22	Tnfsf14 (ENSPEMG00000000292) #23	ENSPEMG00000015087 #22	ENSPEMG00000011159	Cd70 (ENSPEMG00000015587) #24	Tnfsf9 (ENSPEMG00000020989) #25	Tubb4a (ENSPEMG00000028633) #26	Dennd1c (ENSPEMG00000023860) #27	Crb3 (ENSPEMG00000021919) #28	Slc25a23 (ENSPEMG00000021021) #29	Slc25a41 (ENSPEMG00000020675)	Khsrp (ENSPEMG00000022853) #30	Gm17949 (ENSPEMG00000026776)	Gtf2f1 (ENSPEMG00000011236) #31	Pspn (ENSPEMG00000008246) #32	Alkbh7 (ENSPEMG00000016536) #33
Northern American deer mouse	MODERN SPECIES	14	Acer1 (ENSPEMG00000021242) #35	Clpp (ENSPEMG00000009546) #34	Alkbh7 (ENSPEMG00000016536) #33	Pspn (ENSPEMG00000008246) #32	Gtf2f1 (ENSPEMG00000011236) #31	Gm17949 (ENSPEMG00000026776)	Khsrp (ENSPEMG00000022853) #30	Slc25a41 (ENSPEMG00000020675)	Slc25a23 (ENSPEMG00000021021) #29	Crb3 (ENSPEMG00000021919) #28	Dennd1c (ENSPEMG00000023860) #27	Tubb4a (ENSPEMG00000028633) #26	Tnfsf9 (ENSPEMG00000020989) #25	Cd70 (ENSPEMG00000015587) #24	ENSPEMG00000011159	ENSPEMG00000015087 #22	Tnfsf14 (ENSPEMG00000000292) #23	ENSPEMG00000001526 #22	Gpr108 (ENSPEMG00000030315) #21	Trip10 (ENSPEMG00000017394) #20	ENSPEMG00000031058 #19	Vav1 (ENSPEMG00000015943) #18	Adgre1 (ENSPEMG00000013357) #17	ENSPEMG00000008525	ENSPEMG00000028855	ENSPEMG00000030002	2610008E11Rik (ENSPEMG00000029764)	ENSPEMG00000008518	ENSPEMG00000008828	Or7a36 (ENSPEMG00000011041)	ENSPEMG00000009495
Prairie vole	MODERN SPECIES	181													Vav1 (ENSMOCG00000021139) #18	Trip10 (ENSMOCG00000013943) #20	ENSMOCG00000018962 #21	C3 (ENSMOCG00000008114) #22	Tnfsf14 (ENSMOCG00000016341) #23	Cd70 (ENSMOCG00000021343) #24	Tnfsf9 (ENSMOCG00000018705) #25	Tubb4a (ENSMOCG00000015551) #26	ENSMOCG00000001187 #27	Crb3 (ENSMOCG00000000421) #28	Slc25a23 (ENSMOCG00000014701) #29	Slc25a41 (ENSMOCG00000013299)	Khsrp (ENSMOCG00000018305) #30	Gm17949 (ENSMOCG00000016801)	Gtf2f1 (ENSMOCG00000000296) #31	Pspn (ENSMOCG00000014015) #32	Alkbh7 (ENSMOCG00000004923) #33	Clpp (ENSMOCG00000015784) #34	Acer1 (ENSMOCG00000002295) #35
Murinae	ANCESTRAL SPECIES	38												ENSGT00940000161354 #17	ENSGT00940000159125 #18	ENSGT00950000183047.c.a #20	ENSGT00940000160446 #21	ENSGT00940000154063.C.a.b #22	ENSGT01060000248544.a.a.b.a.a #23	ENSGT00390000006744 #24	ENSGT00390000006244 #25	ENSGT00940000161972 #26	ENSGT00940000161573 #27	ENSGT00950000183101.a.b.a #28	ENSGT00940000159428 #29	ENSGT00940000162419	ENSGT00940000156051 #30	ENSGT00940000163693	ENSGT00440000038032 #31	ENSGT00950000182993.B.b #32	ENSGT00390000014585 #33	ENSGT00390000005830 #34	ENSGT00730000110920.b.a.a #35
Mus	ANCESTRAL SPECIES	16	ENSGT00390000014003	ENSGT00860000135662	ENSGT01030000234638.b.b.c.b	ENSGT00940000154585.a	ENSGT00940000154997	ENSGT00860000136101	ENSGT00940000156973	ENSGT00940000157299	ENSGT00940000157592	ENSGT00530000064469	ENSGT00940000164023.c.a	ENSGT00940000161354 #17	ENSGT00940000159125 #18	ENSGT00950000183047.c.a #20	ENSGT00940000160446 #21	ENSGT00940000154063.C.a.b #22	ENSGT01060000248544.a.a.b.a.a #23	ENSGT00390000006744 #24	ENSGT00390000006244 #25	ENSGT01100000266942	ENSGT00940000161972 #26	ENSGT00940000161573 #27	ENSGT00950000183101.a.b.a #28	ENSGT00940000159428 #29	ENSGT00940000162419	ENSGT00940000156051 #30	ENSGT00940000163693	ENSGT00440000038032 #31	ENSGT00950000182993.B.b #32	ENSGT00390000014585 #33	ENSGT00390000005830 #34
Mus_A	ANCESTRAL SPECIES	10	ENSGT00860000135662	ENSGT01030000234638.b.b.c.b	ENSGT00940000154585.a	ENSGT00940000154997	ENSGT00860000136101	ENSGT00940000156973	ENSGT00940000157299	ENSGT00940000157592	ENSGT00530000064469	ENSGT00940000164023.c.a	ENSGT00960000186717.a.b	ENSGT00940000161354 #17	ENSGT00940000159125 #18	ENSGT00950000183047.c.a #20	ENSGT00940000160446 #21	ENSGT00940000154063.C.a.b #22	ENSGT01060000248544.a.a.b.a.a #23	ENSGT00390000006744 #24	ENSGT00390000006244 #25	ENSGT01100000266942	ENSGT00940000161972 #26	ENSGT00940000161573 #27	ENSGT00950000183101.a.b.a #28	ENSGT00940000159428 #29	ENSGT00940000162419	ENSGT00940000156051 #30	ENSGT00940000163693	ENSGT00440000038032 #31	ENSGT00950000182993.B.b #32	ENSGT00390000014585 #33	ENSGT00390000005830 #34
Mus_B	ANCESTRAL SPECIES	9	ENSGT00860000135662	ENSGT01030000234638.b.b.c.b	ENSGT00940000154585.a	ENSGT00940000154997	ENSGT00860000136101	ENSGT00940000156973	ENSGT00940000157299	ENSGT00940000157592	ENSGT00530000064469	ENSGT00940000164023.c.a	ENSGT00960000186717.a.b	ENSGT00940000161354 #17	ENSGT00940000159125 #18	ENSGT00950000183047.c.a #20	ENSGT00940000160446 #21	ENSGT00940000154063.C.a.b #22	ENSGT01060000248544.a.a.b.a.a #23	ENSGT00390000006744 #24	ENSGT00390000006244 #25	ENSGT01100000266942	ENSGT00940000161972 #26	ENSGT00940000161573 #27	ENSGT00950000183101.a.b.a #28	ENSGT00940000159428 #29	ENSGT00940000162419	ENSGT00940000156051 #30	ENSGT00940000163693	ENSGT00440000038032 #31	ENSGT00950000182993.B.b #32	ENSGT00390000014585 #33	ENSGT00390000005830 #34
Mouse	MODERN SPECIES	8	Tmem232 (ENSMUSG00000045036)	4930583I09Rik (ENSMUSG00000024088)	Man2a1 (ENSMUSG00000024085)	Pja2 (ENSMUSG00000024083)	Fer (ENSMUSG00000000127)	Fbxl17 (ENSMUSG00000023965)	Efna5 (ENSMUSG00000048915)	Nudt12 (ENSMUSG00000024228)	Pdzph1 (ENSMUSG00000024227)	Cntnap5c (ENSMUSG00000038048)	Vmn2r120 (ENSMUSG00000090655)	Adgre1 (ENSMUSG00000004730) #17	Vav1 (ENSMUSG00000034116) #18	Trip10 (ENSMUSG00000019487) #20	Gpr108 (ENSMUSG00000005823) #21	C3 (ENSMUSG00000024164) #22	Tnfsf14 (ENSMUSG00000005824) #23	Cd70 (ENSMUSG00000019489) #24	Tnfsf9 (ENSMUSG00000035678) #25	Tubb4a (ENSMUSG00000062591) #26	Dennd1c (ENSMUSG00000002668) #27	Crb3 (ENSMUSG00000044279) #28	Slc25a23 (ENSMUSG00000046329) #29	Slc25a41 (ENSMUSG00000011486)	Khsrp (ENSMUSG00000007670) #30	Gm17949 (ENSMUSG00000109739)	Gtf2f1 (ENSMUSG00000002658) #31	Pspn (ENSMUSG00000002664) #32	Alkbh7 (ENSMUSG00000002661) #33	Clpp (ENSMUSG00000002660) #34	Acer1 (ENSMUSG00000045019) #35
Mus_C	ANCESTRAL SPECIES	9	ENSGT00860000135662	ENSGT01030000234638.b.b.c.b	ENSGT00940000154585.a	ENSGT00940000154997	ENSGT00860000136101	ENSGT00940000156973	ENSGT00940000157299	ENSGT00940000157592	ENSGT00530000064469	ENSGT00940000164023.c.a	ENSGT00960000186717.a.b	ENSGT00940000161354 #17	ENSGT00940000159125 #18	ENSGT00950000183047.c.a #20	ENSGT00940000160446 #21	ENSGT00940000154063.C.a.b #22	ENSGT01060000248544.a.a.b.a.a #23	ENSGT00390000006744 #24	ENSGT00390000006244 #25	ENSGT01100000266942	ENSGT00940000161972 #26	ENSGT00940000161573 #27	ENSGT00950000183101.a.b.a #28	ENSGT00940000159428 #29	ENSGT00940000162419	ENSGT00940000156051 #30	ENSGT00940000163693	ENSGT00440000038032 #31	ENSGT00950000182993.B.b #32	ENSGT00390000014585 #33	ENSGT00390000005830 #34
Steppe mouse	MODERN SPECIES	2657													Vav1 (ENSMSIG00000021244) #18	Trip10 (ENSMSIG00000021462) #20	Gpr108 (ENSMSIG00000021547) #21	C3 (ENSMSIG00000021615) #22	Tnfsf14 (ENSMSIG00000021706) #23	Cd70 (ENSMSIG00000021712) #24	Tnfsf9 (ENSMSIG00000021718) #25	Tubb4a (ENSMSIG00000021731) #26	Dennd1c (ENSMSIG00000021743) #27	Crb3 (ENSMSIG00000021794) #28	Slc25a23 (ENSMSIG00000021822) #29	Slc25a41 (ENSMSIG00000021849)	Khsrp (ENSMSIG00000021874) #30	Gm17949 (ENSMSIG00000021931)	Gtf2f1 (ENSMSIG00000021940) #31	Pspn (ENSMSIG00000021975) #32	Alkbh7 (ENSMSIG00000021986) #33	Clpp (ENSMSIG00000022008) #34	Acer1 (ENSMSIG00000022023) #35
spretus	MODERN SPECIES	8	Man2a1 (MGP_SPRETEiJ_G0022736)	Pja2 (MGP_SPRETEiJ_G0022735)	MGP_SPRETEiJ_G0022734	MGP_SPRETEiJ_G0022733	Fbxl17 (MGP_SPRETEiJ_G0022732)	Efna5 (MGP_SPRETEiJ_G0022731)	Nudt12 (MGP_SPRETEiJ_G0022730)	Pdzph1 (MGP_SPRETEiJ_G0022729)	Cntnap5c (MGP_SPRETEiJ_G0022728)	MGP_SPRETEiJ_G0022727	MGP_SPRETEiJ_G0022726	Adgre1 (MGP_SPRETEiJ_G0022725) #17	Vav1 (MGP_SPRETEiJ_G0022724) #18	Trip10 (MGP_SPRETEiJ_G0022723) #20	Gpr108 (MGP_SPRETEiJ_G0022722) #21	C3 (MGP_SPRETEiJ_G0022721) #22	Tnfsf14 (MGP_SPRETEiJ_G0022720) #23	Cd70 (MGP_SPRETEiJ_G0022719) #24	Tnfsf9 (MGP_SPRETEiJ_G0022718) #25	MGP_SPRETEiJ_G0022717	Tubb4a (MGP_SPRETEiJ_G0022716) #26	MGP_SPRETEiJ_G0022715 #27	Crb3 (MGP_SPRETEiJ_G0022714) #28	Slc25a23 (MGP_SPRETEiJ_G0022713) #29	Slc25a41 (MGP_SPRETEiJ_G0022712)	Khsrp (MGP_SPRETEiJ_G0022711) #30	Gtf2f1 (MGP_SPRETEiJ_G0022710) #31	Pspn (MGP_SPRETEiJ_G0022709) #32	Alkbh7 (MGP_SPRETEiJ_G0022708) #33	Clpp (MGP_SPRETEiJ_G0022707) #34	Acer1 (MGP_SPRETEiJ_G0022706) #35
Ryukyu mouse	MODERN SPECIES	8	Man2a1 (MGP_CAROLIEiJ_G0021825)	Pja2 (MGP_CAROLIEiJ_G0021824)	MGP_CAROLIEiJ_G0021823	MGP_CAROLIEiJ_G0021822	Fbxl17 (MGP_CAROLIEiJ_G0021821)	Efna5 (MGP_CAROLIEiJ_G0021820)	Nudt12 (MGP_CAROLIEiJ_G0021819)	Pdzph1 (MGP_CAROLIEiJ_G0021818)	Cntnap5c (MGP_CAROLIEiJ_G0021817)	MGP_CAROLIEiJ_G0021816	MGP_CAROLIEiJ_G0021815	Adgre1 (MGP_CAROLIEiJ_G0021814) #17	Vav1 (MGP_CAROLIEiJ_G0021813) #18	Trip10 (MGP_CAROLIEiJ_G0021812) #20	Gpr108 (MGP_CAROLIEiJ_G0021811) #21	C3 (MGP_CAROLIEiJ_G0021810) #22	Tnfsf14 (MGP_CAROLIEiJ_G0021809) #23	Cd70 (MGP_CAROLIEiJ_G0021808) #24	Tnfsf9 (MGP_CAROLIEiJ_G0021807) #25	MGP_CAROLIEiJ_G0021806	Tubb4a (MGP_CAROLIEiJ_G0021805) #26	Dennd1c (MGP_CAROLIEiJ_G0021804) #27	Crb3 (MGP_CAROLIEiJ_G0021803) #28	Slc25a23 (MGP_CAROLIEiJ_G0021802) #29	Slc25a41 (MGP_CAROLIEiJ_G0021801)	Khsrp (MGP_CAROLIEiJ_G0021800) #30	Gtf2f1 (MGP_CAROLIEiJ_G0021799) #31	Pspn (MGP_CAROLIEiJ_G0021798) #32	Alkbh7 (MGP_CAROLIEiJ_G0021797) #33	Clpp (MGP_CAROLIEiJ_G0021796) #34	Acer1 (MGP_CAROLIEiJ_G0021795) #35
Shrew mouse	MODERN SPECIES	9	4930583I09Rik (MGP_PahariEiJ_G0020814)	MGP_PahariEiJ_G0020813	Pja2 (MGP_PahariEiJ_G0020812)	MGP_PahariEiJ_G0020811	MGP_PahariEiJ_G0020810	Fbxl17 (MGP_PahariEiJ_G0020809)	Efna5 (MGP_PahariEiJ_G0020808)	Nudt12 (MGP_PahariEiJ_G0020807)	MGP_PahariEiJ_G0020806	MGP_PahariEiJ_G0020805	MGP_PahariEiJ_G0020804	Adgre1 (MGP_PahariEiJ_G0020803) #17	Vav1 (MGP_PahariEiJ_G0020802) #18	Trip10 (MGP_PahariEiJ_G0020801) #20	Gpr108 (MGP_PahariEiJ_G0020800) #21	C3 (MGP_PahariEiJ_G0020799) #22	Tnfsf14 (MGP_PahariEiJ_G0020798) #23	Cd70 (MGP_PahariEiJ_G0020797) #24	Tnfsf9 (MGP_PahariEiJ_G0020796) #25	MGP_PahariEiJ_G0020795	Tubb4a (MGP_PahariEiJ_G0020794) #26	Dennd1c (MGP_PahariEiJ_G0020793) #27	Crb3 (MGP_PahariEiJ_G0020792) #28	Slc25a23 (MGP_PahariEiJ_G0020791) #29	Slc25a41 (MGP_PahariEiJ_G0020790)	Khsrp (MGP_PahariEiJ_G0020789) #30	Gtf2f1 (MGP_PahariEiJ_G0020788) #31	Pspn (MGP_PahariEiJ_G0020787) #32	Alkbh7 (MGP_PahariEiJ_G0020786) #33	Clpp (MGP_PahariEiJ_G0020785) #34	Acer1 (MGP_PahariEiJ_G0020784) #35
Rat	MODERN SPECIES	19	LOC100360856 (ENSRNOG00000047581)	LOC120094612 (ENSRNOG00000064783)	LOC120094606 (ENSRNOG00000067046)	ENSRNOG00000066561	ENSRNOG00000066502	LOC120094605 (ENSRNOG00000033341)	ENSRNOG00000070059	LOC120094607 (ENSRNOG00000064862)	ENSRNOG00000069918	LOC120094604 (ENSRNOG00000062772)	Vom2r79 (ENSRNOG00000047337)	Adgre1 (ENSRNOG00000046254) #17	Vav1 (ENSRNOG00000050430) #18	Trip10 (ENSRNOG00000055524) #20	Gpr108 (ENSRNOG00000046128) #21	C3 (ENSRNOG00000046834) #22	Tnfsf14 (ENSRNOG00000047730) #23	Cd70 (ENSRNOG00000051015) #24	Brcc3 (ENSRNOG00000048061)	Tnfsf9 (ENSRNOG00000045595) #25	Tubb4a (ENSRNOG00000047505) #26	Dennd1c (ENSRNOG00000046050) #27	Crb3 (ENSRNOG00000070099) #28	Slc25a23 (ENSRNOG00000047781) #29	Slc25a41 (ENSRNOG00000048853)	Khsrp (ENSRNOG00000047628) #30	Gm17949 (ENSRNOG00000064877)	Gtf2f1 (ENSRNOG00000047134) #31	Pspn (ENSRNOG00000071190) #32	Alkbh7 (ENSRNOG00000047089) #33	Clpp (ENSRNOG00000047052) #34
Upper Galilee mountains blind mole rat	MODERN SPECIES	975										ENSNGAG00000013551	Adgre4 (ENSNGAG00000011964)	Adgre1 (ENSNGAG00000023217) #17	Vav1 (ENSNGAG00000018348) #18	Trip10 (ENSNGAG00000014674) #20	Gpr108 (ENSNGAG00000016378) #21	C3 (ENSNGAG00000022830) #22	Tnfsf14 (ENSNGAG00000023106) #23	Cd70 (ENSNGAG00000013982) #24	Tubb4a (ENSNGAG00000019498) #26	Dennd1c (ENSNGAG00000015322) #27	Crb3 (ENSNGAG00000023048) #28	Slc25a23 (ENSNGAG00000023065) #29	Slc25a41 (ENSNGAG00000019185)	Khsrp (ENSNGAG00000023093) #30	Gm17949 (ENSNGAG00000023078)	Gtf2f1 (ENSNGAG00000023277) #31	Pspn (ENSNGAG00000022337) #32	Alkbh7 (ENSNGAG00000018037) #33	Clpp (ENSNGAG00000020943) #34	Acer1 (ENSNGAG00000021750) #35	Mllt1 (ENSNGAG00000015361) #36
Lesser Egyptian jerboa	MODERN SPECIES	55													Vav1 (ENSJJAG00000023634) #18	Trip10 (ENSJJAG00000011683) #20	Gpr108 (ENSJJAG00000023696) #21	C3 (ENSJJAG00000024349) #22	Tnfsf14 (ENSJJAG00000004377) #23	Cd70 (ENSJJAG00000019950) #24	Tubb4a (ENSJJAG00000001103) #26	ENSJJAG00000023239 #27	Crb3 (ENSJJAG00000017361) #28	Slc25a23 (ENSJJAG00000018390) #29	Slc25a41 (ENSJJAG00000009731)	Khsrp (ENSJJAG00000006370) #30	Gm17949 (ENSJJAG00000017204)	Gtf2f1 (ENSJJAG00000016614) #31	Pspn (ENSJJAG00000023140) #32	Alkbh7 (ENSJJAG00000023908) #33	ENSJJAG00000019233 #34	Acer1 (ENSJJAG00000018285) #35	Mllt1 (ENSJJAG00000017227) #36
Kangaroo rat	MODERN SPECIES	383	Bsg (ENSDORG00000011405)	Gzmm (ENSDORG00000013911)	ENSDORG00000027459	ENSDORG00000027937	Tpgs1 (ENSDORG00000002913)	Madcam1 (ENSDORG00000027477)	Odf3l2 (ENSDORG00000029131)	Shc2 (ENSDORG00000001524)	C2cd4c (ENSDORG00000012207)	ENSDORG00000028256	Mier2 (ENSDORG00000008994)	Plpp2 (ENSDORG00000028750)	Vav1 (ENSDORG00000014409) #18	Trip10 (ENSDORG00000009210) #20	Gpr108 (ENSDORG00000009208) #21	C3 (ENSDORG00000009909) #22	Tnfsf14 (ENSDORG00000028843) #23	Tubb4a (ENSDORG00000030020) #26	ENSDORG00000029765 #27	Crb3 (ENSDORG00000002452) #28	Slc25a41 (ENSDORG00000002448)	Khsrp (ENSDORG00000002447) #30	Gm17949 (ENSDORG00000002446)	Gtf2f1 (ENSDORG00000002445) #31	Pspn (ENSDORG00000002443) #32	Alkbh7 (ENSDORG00000002441) #33	Clpp (ENSDORG00000002435) #34	Acer1 (ENSDORG00000013614) #35	Mllt1 (ENSDORG00000006056) #36	Acsbg3 (ENSDORG00000026047)	Acsbg2 (ENSDORG00000024853) #37
Lagomorpha	ANCESTRAL SPECIES	291															ENSGT00940000160446 #21	ENSGT00940000154063.C.a.b #22	ENSGT01060000248544.a.a.b.a.a #23	ENSGT00390000006744 #24	ENSGT00940000161972 #26	ENSGT00940000161573 #27	ENSGT00950000183101.a.b.a #28	ENSGT00940000159428 #29
Rabbit	MODERN SPECIES	918																ENSOCUG00000031964 #22	TNFSF14 (ENSOCUG00000008338) #23	ENSOCUG00000038215	ENSOCUG00000003616 #24	TUBB4A (ENSOCUG00000024997) #26	DENND1C (ENSOCUG00000010627) #27
Pika	MODERN SPECIES	855															GPR108 (ENSOPRG00000019213) #21	C3 (ENSOPRG00000005319) #22
Laurasiatheria	ANCESTRAL SPECIES	15	ENSGT00950000183036.b	ENSGT00940000162948	ENSGT00390000014215	ENSGT00390000000427	ENSGT00940000157375	ENSGT00940000154146.b.b.b	ENSGT00940000155404 #15	ENSGT00940000154431.f	ENSGT00950000183069.b	ENSGT00940000162163	ENSGT00940000161354 #17	ENSGT00940000159125 #18	ENSGT00940000154130.a.a.a #19	ENSGT00950000183047.c.a #20	ENSGT00940000160446 #21	ENSGT00940000154063.C.a.b #22	ENSGT01060000248544.a.a.b.a.a #23	ENSGT00390000006744 #24	ENSGT00390000006244 #25	ENSGT00940000164486	ENSGT00940000161972 #26	ENSGT00940000161573 #27	ENSGT00950000183101.a.b.a #28	ENSGT00940000159428 #29	ENSGT00940000162419	ENSGT00940000156051 #30	ENSGT00940000163693	ENSGT00440000038032 #31	ENSGT00950000182993.B.b #32	ENSGT00390000014585 #33	ENSGT00390000005830 #34
Eulipotyphla	ANCESTRAL SPECIES																	ENSGT00940000154063.C.a.b #22
Hedgehog	MODERN SPECIES	2491																C3 (ENSEEUG00000003250) #22
Common shrew	MODERN SPECIES	1825																ENSSARG00000007395 #22
Laurasiatheria_a	ANCESTRAL SPECIES	19	ENSGT00390000006876	ENSGT00940000158870	ENSGT00940000158404	ENSGT00940000164108.b	ENSGT00940000163012	ENSGT01090000260018.B.a.b	ENSGT00940000160844	ENSGT00950000183005.b.c.a ##16	ENSGT00950000183005.b.c.b #16	ENSGT00940000162163	ENSGT00940000161354 #17	ENSGT00940000159125 #18	ENSGT00940000154130.a.a.a #19	ENSGT00950000183047.c.a #20	ENSGT00940000160446 #21	ENSGT00940000154063.C.a.b #22	ENSGT01060000248544.a.a.b.a.a #23	ENSGT00390000006744 #24	ENSGT00390000006244 #25	ENSGT00940000164486	ENSGT00940000161972 #26	ENSGT00940000161573 #27	ENSGT00950000183101.a.b.a #28	ENSGT00940000159428 #29	ENSGT00940000162419	ENSGT00940000156051 #30	ENSGT00940000163693	ENSGT00440000038032 #31	ENSGT00950000182993.B.b #32	ENSGT00390000014585 #33	ENSGT00390000005830 #34
Artiodactyla	ANCESTRAL SPECIES	23	ENSGT00940000154595	ENSGT00530000063460.B	ENSGT00390000006876	ENSGT00940000158870	ENSGT00940000158404	ENSGT00940000164108.b	ENSGT00940000163012	ENSGT01090000260018.B.a.b	ENSGT00950000183005.b.c.b #16	ENSGT00940000162163	ENSGT00940000161354 #17	ENSGT00940000159125 #18	ENSGT00940000154130.a.a.a #19	ENSGT00950000183047.c.a #20	ENSGT00940000160446 #21	ENSGT00940000154063.C.a.b #22	ENSGT01060000248544.a.a.b.a.a #23	ENSGT00390000006744 #24	ENSGT00390000006244 #25	ENSGT00940000164486	ENSGT00940000161972 #26	ENSGT00940000161573 #27	ENSGT00950000183101.a.b.a #28	ENSGT00940000159428 #29	ENSGT00940000162419	ENSGT00940000156051 #30	ENSGT00940000163693	ENSGT00440000038032 #31	ENSGT00950000182993.B.b #32	ENSGT00390000014585 #33	ENSGT00390000005830 #34
Suina	ANCESTRAL SPECIES	16	ENSGT00950000183036.b	ENSGT00940000162948	ENSGT00390000014215	ENSGT00390000000427	ENSGT00940000157375	ENSGT00940000154146.b.b.b	ENSGT00940000155404 #15	ENSGT00940000154431.f.e.b	ENSGT00950000183005.b.c.b #16	ENSGT00940000162163	ENSGT00940000161354 #17	ENSGT00940000159125 #18	ENSGT00940000154130.a.a.a #19	ENSGT00950000183047.c.a #20	ENSGT00940000160446 #21	ENSGT00940000154063.C.a.b #22	ENSGT01060000248544.a.a.b.a.a #23	ENSGT00390000006744 #24	ENSGT00390000006244 #25	ENSGT00940000161972 #26	ENSGT00940000161573 #27	ENSGT00950000183101.a.b.a #28	ENSGT00940000159428 #29	ENSGT00940000162419	ENSGT00940000156051 #30	ENSGT00440000038032 #31	ENSGT00950000182993.B.b #32	ENSGT00390000014585 #33	ENSGT00390000005830 #34	ENSGT00730000110920.b.a.a #35	ENSGT00940000158800 #36
Chacoan peccary	MODERN SPECIES	770	MCOLN1 (ENSCWAG00000012124)	ZNF358 (ENSCWAG00000012107)	TEX45 (ENSCWAG00000011996)	PEX11G (ENSCWAG00000011918)	ARHGEF18 (ENSCWAG00000011670)	ENSCWAG00000011535	INSR (ENSCWAG00000011448) #15	ENSCWAG00000011389	ENSCWAG00000011348 #16	ENSCWAG00000011207	ADGRE1 (ENSCWAG00000010899) #17	VAV1 (ENSCWAG00000009741) #18	SH2D3A (ENSCWAG00000009467) #19	TRIP10 (ENSCWAG00000009207) #20	GPR108 (ENSCWAG00000009134) #21	C3 (ENSCWAG00000008783) #22	TNFSF14 (ENSCWAG00000008731) #23	CD70 (ENSCWAG00000008679) #24	TNFSF9 (ENSCWAG00000008641) #25	TUBB4A (ENSCWAG00000008574) #26	DENND1C (ENSCWAG00000008209) #27	CRB3 (ENSCWAG00000008071) #28	SLC25A23 (ENSCWAG00000007971) #29	SLC25A41 (ENSCWAG00000007889)	KHSRP (ENSCWAG00000017455) #30	GTF2F1 (ENSCWAG00000017421) #31	PSPN (ENSCWAG00000017389) #32	ALKBH7 (ENSCWAG00000017346) #33	CLPP (ENSCWAG00000017303) #34	ACER1 (ENSCWAG00000017254) #35	MLLT1 (ENSCWAG00000017206) #36
Pig	MODERN SPECIES	10	ENSSSCG00000059639	ENSSSCG00000061581	ENSSSCG00000053848 #16	ENSSSCG00000059567	ENSSSCG00000055205	ENSSSCG00000055659 #16	ENSSSCG00000056479	ENSSSCG00000026402	ENSSSCG00000050577	ENSSSCG00000040016	ENSSSCG00000013556 #17	VAV1 (ENSSSCG00000013553) #18	SH2D3A (ENSSSCG00000022380) #19	TRIP10 (ENSSSCG00000013554) #20	GPR108 (ENSSSCG00000013552) #21	C3 (ENSSSCG00000013551) #22	TNFSF14 (ENSSSCG00000026695) #23	ENSSSCG00000024275	ENSSSCG00000060067	CD70 (ENSSSCG00000031115) #24	TNFSF9 (ENSSSCG00000022370) #25	TUBB4A (ENSSSCG00000013545) #26	DENND1C (ENSSSCG00000013546) #27	CRB3 (ENSSSCG00000051897) #28	SLC25A23 (ENSSSCG00000013550) #29	SLC25A41 (ENSSSCG00000032785)	KHSRP (ENSSSCG00000013538) #30	GTF2F1 (ENSSSCG00000013539) #31	ALKBH7 (ENSSSCG00000024254) #33	PSPN (ENSSSCG00000013540) #32	CLPP (ENSSSCG00000038079) #34
Artiodactyla_a	ANCESTRAL SPECIES	24	ENSGT00940000154595	ENSGT00530000063460.B	ENSGT00390000006876	ENSGT00940000158870	ENSGT00940000158404	ENSGT00940000164108.b	ENSGT00940000163012	ENSGT01090000260018.B.a.b	ENSGT00950000183005.b.c.b #16	ENSGT00940000162163	ENSGT00940000161354 #17	ENSGT00940000159125 #18	ENSGT00940000154130.a.a.a #19	ENSGT00950000183047.c.a #20	ENSGT00940000160446 #21	ENSGT00940000154063.C.a.b #22	ENSGT01060000248544.a.a.b.a.a #23	ENSGT00390000006744 #24	ENSGT00390000006244 #25	ENSGT00940000164486	ENSGT00940000161972 #26	ENSGT00940000161573 #27	ENSGT00950000183101.a.b.a #28	ENSGT00940000159428 #29	ENSGT00940000162419	ENSGT00940000156051 #30	ENSGT00940000163693	ENSGT00440000038032 #31	ENSGT00950000182993.B.b #32	ENSGT00390000014585 #33	ENSGT00390000005830 #34
Artiodactyla_b	ANCESTRAL SPECIES	25	ENSGT00530000063460.B	ENSGT00390000006876	ENSGT00940000158870	ENSGT00940000158404	ENSGT00940000164108.b	ENSGT00940000163012	ENSGT01090000260018.B.a.b	ENSGT00940000160844	ENSGT00950000183005.b.c.b #16	ENSGT00940000162163	ENSGT00940000161354 #17	ENSGT00940000159125 #18	ENSGT00940000154130.a.a.a #19	ENSGT00950000183047.c.a #20	ENSGT00940000160446 #21	ENSGT00940000154063.C.a.b #22	ENSGT01060000248544.a.a.b.a.a #23	ENSGT00390000006744 #24	ENSGT00390000006244 #25	ENSGT00940000164486	ENSGT00940000161972 #26	ENSGT00940000161573 #27	ENSGT00950000183101.a.b.a #28	ENSGT00940000159428 #29	ENSGT00940000162419	ENSGT00940000156051 #30	ENSGT00940000163693	ENSGT00440000038032 #31	ENSGT00950000182993.B.b #32	ENSGT00390000014585 #33	ENSGT00390000005830 #34
Cetacea	ANCESTRAL SPECIES	1	ENSGT00950000182975.a.b	ENSGT00940000159130	ENSGT00950000183036.b	ENSGT00940000162948	ENSGT00390000014215	ENSGT00390000000427	ENSGT00940000157375	ENSGT00940000155404 #15	ENSGT00940000160844.d	ENSGT00950000183005.b.c.b #16	ENSGT00940000161354 #17	ENSGT00940000159125 #18	ENSGT00940000154130.a.a.a #19	ENSGT00950000183047.c.a #20	ENSGT00940000160446 #21	ENSGT00940000154063.C.a.b #22	ENSGT01060000248544.a.a.b.a.a #23	ENSGT00390000006744 #24	ENSGT00390000006244 #25	ENSGT00940000161972 #26	ENSGT00940000161573 #27	ENSGT00950000183101.a.b.a #28	ENSGT00940000159428 #29	ENSGT00940000162419	ENSGT00940000156051 #30	ENSGT00940000163693	ENSGT00440000038032 #31	ENSGT00950000182993.B.b #32	ENSGT00390000014585 #33	ENSGT00390000005830 #34	ENSGT00730000110920.b.a.a #35
Odontoceti	ANCESTRAL SPECIES	1	ENSGT00950000182975.a.b	ENSGT00940000159130	ENSGT00950000183036.b	ENSGT00940000162948	ENSGT00390000014215	ENSGT00390000000427	ENSGT00940000157375	ENSGT00940000155404 #15	ENSGT00940000160844.d	ENSGT00950000183005.b.c.b #16	ENSGT00940000161354 #17	ENSGT00940000159125 #18	ENSGT00940000154130.a.a.a #19	ENSGT00950000183047.c.a #20	ENSGT00940000160446 #21	ENSGT00940000154063.C.a.b #22	ENSGT01060000248544.a.a.b.a.a #23	ENSGT00390000006744 #24	ENSGT00390000006244 #25	ENSGT00940000161972 #26	ENSGT00940000161573 #27	ENSGT00950000183101.a.b.a #28	ENSGT00940000159428 #29	ENSGT00940000156051 #30	ENSGT00940000163693	ENSGT00440000038032 #31	ENSGT00950000182993.B.b #32	ENSGT00390000014585 #33	ENSGT00390000005830 #34	ENSGT00730000110920.b.a.a #35	ENSGT00940000158800 #36
Odontoceti_a	ANCESTRAL SPECIES	1	ENSGT00950000182975.a.b	ENSGT00940000159130	ENSGT00950000183036.b	ENSGT00940000162948	ENSGT00390000014215	ENSGT00390000000427	ENSGT00940000157375	ENSGT00940000155404 #15	ENSGT00940000160844.d	ENSGT00950000183005.b.c.b #16	ENSGT00940000161354 #17	ENSGT00940000159125 #18	ENSGT00940000154130.a.a.a #19	ENSGT00950000183047.c.a #20	ENSGT00940000160446 #21	ENSGT00940000154063.C.a.b #22	ENSGT01060000248544.a.a.b.a.a #23	ENSGT00390000006744 #24	ENSGT00390000006244 #25	ENSGT00940000161972 #26	ENSGT00940000161573 #27	ENSGT00950000183101.a.b.a #28	ENSGT00940000159428 #29	ENSGT00940000156051 #30	ENSGT00940000163693	ENSGT00440000038032 #31	ENSGT00950000182993.B.b #32	ENSGT00390000014585 #33	ENSGT00390000005830 #34	ENSGT00730000110920.b.a.a #35	ENSGT00940000158800 #36
Odontoceti_b	ANCESTRAL SPECIES	1	ENSGT00950000182975.a.b	ENSGT00940000159130	ENSGT00950000183036.b	ENSGT00940000162948	ENSGT00390000014215	ENSGT00390000000427	ENSGT00940000157375	ENSGT00940000155404 #15	ENSGT00940000160844.d	ENSGT00950000183005.b.c.b #16	ENSGT00940000161354 #17	ENSGT00940000159125 #18	ENSGT00940000154130.a.a.a #19	ENSGT00950000183047.c.a #20	ENSGT00940000160446 #21	ENSGT00940000154063.C.a.b #22	ENSGT00940000157061.b	ENSGT01060000248544.a.a.b.a.a #23	ENSGT00390000006744 #24	ENSGT00390000006244 #25	ENSGT00940000161972 #26	ENSGT00940000161573 #27	ENSGT00950000183101.a.b.a #28	ENSGT00940000159428 #29	ENSGT00940000156051 #30	ENSGT00940000163693	ENSGT00440000038032 #31	ENSGT00950000182993.B.b #32	ENSGT00390000014585 #33	ENSGT00390000005830 #34	ENSGT00730000110920.b.a.a #35
Monodontidae	ANCESTRAL SPECIES	17	ENSGT00950000182975.a.b	ENSGT00940000159130	ENSGT00950000183036.b	ENSGT00940000162948	ENSGT00390000014215	ENSGT00390000000427	ENSGT00940000157375	ENSGT00940000155404 #15	ENSGT00940000160844.d	ENSGT00950000183005.b.c.b #16	ENSGT00940000161354 #17	ENSGT00940000159125 #18	ENSGT00940000154130.a.a.a #19	ENSGT00950000183047.c.a #20	ENSGT00940000160446 #21	ENSGT00940000154063.C.a.b #22	ENSGT00940000157061.b	ENSGT01060000248544.a.a.b.a.a #23	ENSGT00390000006744 #24	ENSGT00390000006244 #25	ENSGT00940000161972 #26	ENSGT00940000161573 #27	ENSGT00950000183101.a.b.a #28	ENSGT00940000159428 #29	ENSGT00940000156051 #30	ENSGT00940000163693	ENSGT00440000038032 #31	ENSGT00950000182993.B.b #32	ENSGT00390000014585 #33	ENSGT00390000005830 #34	ENSGT00730000110920.b.a.a #35
Narwhal	MODERN SPECIES	298	CAMSAP3 (ENSMMNG00015018439)	PNPLA6 (ENSMMNG00015018069)	MCOLN1 (ENSMMNG00015017901)	ZNF358 (ENSMMNG00015017875)	ENSMMNG00015017815	PEX11G (ENSMMNG00015017778)	ARHGEF18 (ENSMMNG00015017706)	INSR (ENSMMNG00015017616) #15	ENSMMNG00015017548	ENSMMNG00015017521 #16	ADGRE1 (ENSMMNG00015017131) #17	VAV1 (ENSMMNG00015016847) #18	SH2D3A (ENSMMNG00015016722) #19	TRIP10 (ENSMMNG00015016642) #20	GPR108 (ENSMMNG00015016574) #21	C3 (ENSMMNG00015016478) #22	ENSMMNG00015016434	TNFSF14 (ENSMMNG00015016417) #23	CD70 (ENSMMNG00015016394) #24	TNFSF9 (ENSMMNG00015016367) #25	TUBB4A (ENSMMNG00015016340) #26	DENND1C (ENSMMNG00015016214) #27	CRB3 (ENSMMNG00015016166) #28	SLC25A23 (ENSMMNG00015016105) #29	KHSRP (ENSMMNG00015015884) #30	ENSMMNG00015015791	GTF2F1 (ENSMMNG00015015754) #31	PSPN (ENSMMNG00015015733) #32	ALKBH7 (ENSMMNG00015015715) #33	CLPP (ENSMMNG00015015685) #34	ACER1 (ENSMMNG00015015665) #35
Beluga whale	MODERN SPECIES	62	PNPLA6 (ENSDLEG00000017320)	MCOLN1 (ENSDLEG00000017466)	ZNF358 (ENSDLEG00000017539)	ENSDLEG00000017554	PEX11G (ENSDLEG00000017598)	ARHGEF18 (ENSDLEG00000017620)	ENSDLEG00000017661	ENSDLEG00000017679 #15	ENSDLEG00000017691	ENSDLEG00000017698 #16	ADGRE1 (ENSDLEG00000017725) #17	ENSDLEG00000017772 #18	SH2D3A (ENSDLEG00000013440) #19	TRIP10 (ENSDLEG00000013465) #20	GPR108 (ENSDLEG00000013487) #21	C3 (ENSDLEG00000013524) #22	TNFSF14 (ENSDLEG00000013733) #23	CD70 (ENSDLEG00000013745) #24	ENSDLEG00000013797	ENSDLEG00000013807 #25	TUBB4A (ENSDLEG00000013810) #26	ENSDLEG00000013828 #27	ENSDLEG00000013892 #27	CRB3 (ENSDLEG00000013951) #28	SLC25A23 (ENSDLEG00000013960) #29	KHSRP (ENSDLEG00000013980) #30	ENSDLEG00000014038	GTF2F1 (ENSDLEG00000014057) #31	PSPN (ENSDLEG00000014081) #32	ALKBH7 (ENSDLEG00000014092) #33	CLPP (ENSDLEG00000014104) #34
Vaquita	MODERN SPECIES	14	CAMSAP3 (ENSPSNG00000009215)	PNPLA6 (ENSPSNG00000009051)	MCOLN1 (ENSPSNG00000008932)	ZNF358 (ENSPSNG00000008912)	ENSPSNG00000008826	PEX11G (ENSPSNG00000008789)	ARHGEF18 (ENSPSNG00000008281)	INSR (ENSPSNG00000007930) #15	ENSPSNG00000007855	ENSPSNG00000007810 #16	ADGRE1 (ENSPSNG00000007315) #17	VAV1 (ENSPSNG00000006761) #18	SH2D3A (ENSPSNG00000006525) #19	TRIP10 (ENSPSNG00000006457) #20	GPR108 (ENSPSNG00000006373) #21	C3 (ENSPSNG00000006189) #22	ENSPSNG00000006157	TNFSF14 (ENSPSNG00000006140) #23	ENSPSNG00000006109 #24	ENSPSNG00000006095 #25	TUBB4A (ENSPSNG00000005996) #26	DENND1C (ENSPSNG00000019480) #27	CRB3 (ENSPSNG00000019435) #28	SLC25A23 (ENSPSNG00000019375) #29	KHSRP (ENSPSNG00000019110) #30	ENSPSNG00000019013	GTF2F1 (ENSPSNG00000018932) #31	ALKBH7 (ENSPSNG00000018862) #33	CLPP (ENSPSNG00000018810) #34	ACER1 (ENSPSNG00000018752) #35	MLLT1 (ENSPSNG00000018623) #36
Dolphin	MODERN SPECIES	175											ADGRE1 (ENSTTRG00000005956) #17	VAV1 (ENSTTRG00000005949) #18	SH2D3A (ENSTTRG00000005945) #19	TRIP10 (ENSTTRG00000005943) #20	GPR108 (ENSTTRG00000005938) #21	C3 (ENSTTRG00000005904) #22	TNLG1D (ENSTTRG00000005891) #23
Sperm whale	MODERN SPECIES	11	CLEC4G (ENSPCTG00005009998)	CAMSAP3 (ENSPCTG00005010103)	ENSPCTG00005010540	XAB2 (ENSPCTG00005010585)	PET100 (ENSPCTG00005010637)	PCP2 (ENSPCTG00005010753)	STXBP2 (ENSPCTG00005010873)	ENSPCTG00005011009 #15	ENSPCTG00005011253	ENSPCTG00005011386 #16	ADGRE1 (ENSPCTG00005011511) #17	VAV1 (ENSPCTG00005012531) #18	SH2D3A (ENSPCTG00005013915) #19	TRIP10 (ENSPCTG00005014182) #20	GPR108 (ENSPCTG00005014379) #21	C3 (ENSPCTG00005014524) #22	TNFSF14 (ENSPCTG00005015045) #23	CD70 (ENSPCTG00005015119) #24	TNFSF9 (ENSPCTG00005015187) #25	KHSRP (ENSPCTG00005015259) #30	CLPP (ENSPCTG00005015762) #34	ACER1 (ENSPCTG00005015854) #35	MLLT1 (ENSPCTG00005015937) #36	ACSBG2 (ENSPCTG00005015989) #37	RFX2 (ENSPCTG00005016359)	ENSPCTG00005008489	ENSPCTG00005008584	ENSPCTG00005008881	LONP1 (ENSPCTG00005009046)	RPL36 (ENSPCTG00005009451)	HSD11B1L (ENSPCTG00005009491)
Blue whale	MODERN SPECIES	14	XAB2 (ENSBMSG00010000808)	CAMSAP3 (ENSBMSG00010000851)	PNPLA6 (ENSBMSG00010001000)	MCOLN1 (ENSBMSG00010001242)	ZNF358 (ENSBMSG00010001278)	ENSBMSG00010001293	PEX11G (ENSBMSG00010001311)	ARHGEF18 (ENSBMSG00010001356)	INSR (ENSBMSG00010001431) #15	ENSBMSG00010001459 #16	ADGRE1 (ENSBMSG00010001551) #17	VAV1 (ENSBMSG00010002016) #18	SH2D3A (ENSBMSG00010002526) #19	TRIP10 (ENSBMSG00010002548) #20	GPR108 (ENSBMSG00010002591) #21	C3 (ENSBMSG00010002651) #22	TNFSF14 (ENSBMSG00010002703) #23	CD70 (ENSBMSG00010002710) #24	TNFSF9 (ENSBMSG00010002721) #25	TUBB4A (ENSBMSG00010002735) #26	DENND1C (ENSBMSG00010002755) #27	CRB3 (ENSBMSG00010002780) #28	SLC25A23 (ENSBMSG00010002792) #29	SLC25A41 (ENSBMSG00010002804)	KHSRP (ENSBMSG00010002829) #30	ENSBMSG00010002906	GTF2F1 (ENSBMSG00010002943) #31	PSPN (ENSBMSG00010002965) #32	ALKBH7 (ENSBMSG00010002973) #33	CLPP (ENSBMSG00010002982) #34	ACER1 (ENSBMSG00010002999) #35
Pecora	ANCESTRAL SPECIES		ENSGT00390000006876	ENSGT00940000158870	ENSGT00940000158404	ENSGT00940000164108.b	ENSGT00940000163012	ENSGT01090000260018.B.a.b	ENSGT00940000154431.e.a.a.a.a	ENSGT00940000154431.e.a.a.a.b	ENSGT00950000183005.b.c.b.ab #16	ENSGT00940000162163	ENSGT00940000161354 #17	ENSGT00940000159125 #18	ENSGT00940000154130.a.a.a #19	ENSGT00950000183047.c.a #20	ENSGT00940000160446 #21	ENSGT00940000154063.C.a.b #22	ENSGT01060000248544.a.a.b.a.a #23	ENSGT00390000006744 #24	ENSGT00390000006244 #25	ENSGT00940000164486	ENSGT00940000161972 #26	ENSGT00940000161573 #27	ENSGT00950000183101.a.b.a #28	ENSGT00940000159428 #29	ENSGT00940000162419	ENSGT00940000156051 #30	ENSGT00440000038032 #31	ENSGT00950000182993.B.b #32	ENSGT00390000014585 #33	ENSGT00390000005830 #34	ENSGT00730000110920.b.a.a #35
Yarkand deer	MODERN SPECIES	32	ADAMTS10 (ENSCHYG00000012363)	NFILZ (ENSCHYG00000012650)	ACTL9 (ENSCHYG00000012673)	OR2Z1 (ENSCHYG00000012698)	ENSCHYG00000012730	ENSCHYG00000012744	ENSCHYG00000012759 #16	ENSCHYG00000012824	ENSCHYG00000013160	ENSCHYG00000013324	ADGRE1 (ENSCHYG00000013389) #17	VAV1 (ENSCHYG00000013476) #18	SH2D3A (ENSCHYG00000014306) #19	TRIP10 (ENSCHYG00000014436) #20	GPR108 (ENSCHYG00000014861) #21	C3 (ENSCHYG00000015491) #22	TNFSF14 (ENSCHYG00000016323) #23	CD70 (ENSCHYG00000016394) #24	ENSCHYG00000016453 #25	ENSCHYG00000016483	TUBB4A (ENSCHYG00000016548) #26	DENND1C (ENSCHYG00000016610) #27	CRB3 (ENSCHYG00000016801) #28	SLC25A23 (ENSCHYG00000016841) #29	KHSRP (ENSCHYG00000017189) #30	ENSCHYG00000019841 #31	PSPN (ENSCHYG00000019928) #32	ALKBH7 (ENSCHYG00000019961) #33	CLPP (ENSCHYG00000020020) #34	ACER1 (ENSCHYG00000020198) #35	MLLT1 (ENSCHYG00000020253) #36
Percora_a	ANCESTRAL SPECIES		ENSGT00390000006876	ENSGT00940000158870	ENSGT00940000158404	ENSGT00940000164108.b	ENSGT00940000163012	ENSGT01090000260018.B.a.b	ENSGT00940000154431.e.a.a.a.a	ENSGT00940000154431.e.a.a.a.b	ENSGT00950000183005.b.c.b.ab #16	ENSGT00940000162163	ENSGT00940000161354 #17	ENSGT00940000159125 #18	ENSGT00940000154130.a.a.a #19	ENSGT00950000183047.c.a #20	ENSGT00940000160446 #21	ENSGT00940000154063.C.a.b #22	ENSGT01060000248544.a.a.b.a.a #23	ENSGT00390000006744 #24	ENSGT00390000006244 #25	ENSGT00940000164486	ENSGT00940000161972 #26	ENSGT00940000161573 #27	ENSGT00950000183101.a.b.a #28	ENSGT00940000159428 #29	ENSGT00940000162419	ENSGT00940000156051 #30	ENSGT00440000038032 #31	ENSGT00950000182993.B.b #32	ENSGT00390000014585 #33	ENSGT00390000005830 #34	ENSGT00730000110920.b.a.a #35
Bovidae	ANCESTRAL SPECIES		ENSGT00390000006876	ENSGT00940000158870	ENSGT00940000158404	ENSGT00940000164108.b	ENSGT00940000163012	ENSGT01090000260018.B.a.b	ENSGT00940000154431.e.a.a.a.a	ENSGT00940000154431.e.a.a.a.b	ENSGT00950000183005.b.c.b.ab #16	ENSGT00940000162163	ENSGT00940000161354 #17	ENSGT00940000159125 #18	ENSGT00940000154130.a.a.a #19	ENSGT00950000183047.c.a #20	ENSGT00940000160446 #21	ENSGT00940000154063.C.a.b #22	ENSGT01060000248544.a.a.b.a.a #23	ENSGT00390000006744 #24	ENSGT00390000006244 #25	ENSGT00940000164486	ENSGT00940000161972 #26	ENSGT00940000161573 #27	ENSGT00950000183101.a.b.a #28	ENSGT00940000159428 #29	ENSGT00940000162419	ENSGT00940000156051 #30	ENSGT00440000038032 #31	ENSGT00950000182993.B.b #32	ENSGT00390000014585 #33	ENSGT00390000005830 #34	ENSGT00730000110920.b.a.a #35
Caprinae	ANCESTRAL SPECIES	3	ENSGT00940000154595	ENSGT00530000063460.B	ENSGT00390000006876	ENSGT00940000158870	ENSGT00940000158404	ENSGT00940000163012	ENSGT01090000260018.B.a.b	ENSGT00940000154431.e.a.a.a.a.a.b	ENSGT00940000154431.e.a.a.a.b	ENSGT00940000162163	ENSGT00940000161354 #17	ENSGT00940000159125 #18	ENSGT00940000154130.a.a.a #19	ENSGT00950000183047.c.a #20	ENSGT00940000160446 #21	ENSGT00940000154063.C.a.b #22	ENSGT01060000248544.a.a.b.a.a.d #23	ENSGT01060000248544.a.a.b.a.a.c #23	ENSGT00390000006744 #24	ENSGT00390000006244 #25	ENSGT00940000164486	ENSGT00940000161972 #26	ENSGT00940000161573 #27	ENSGT00950000183101.a.b.a #28	ENSGT00940000159428 #29	ENSGT00940000162419	ENSGT00940000156051 #30	ENSGT00440000038032 #31	ENSGT00950000182993.B.b #32	ENSGT00390000014585 #33	ENSGT00390000005830 #34
Rambouillet Sheep	MODERN SPECIES	21	MYO1F (ENSOARG00020013845)	ADAMTS10 (ENSOARG00020014322)	ACTL9 (ENSOARG00020014551)	OR2Z1 (ENSOARG00020014568)	ENSOARG00020014583	ENSOARG00020014632	ENSOARG00020014669	ENSOARG00020014729	ENSOARG00020014890	ENSOARG00020014938	ENSOARG00020015222	VAV1 (ENSOARG00020015323) #18	SH2D3A (ENSOARG00020016038) #19	TRIP10 (ENSOARG00020016180) #20	GPR108 (ENSOARG00020016672) #21	C3 (ENSOARG00020016763) #22	ENSOARG00020016803 #23	ENSOARG00020016859	ENSOARG00020017608 #17	ENSOARG00020018946 #23	CD70 (ENSOARG00020019022) #24	ENSOARG00020019063 #25	ENSOARG00020019106	TUBB4A (ENSOARG00020019161) #26	DENND1C (ENSOARG00020019197) #27	CRB3 (ENSOARG00020019269) #28	SLC25A23 (ENSOARG00020019333) #29	SLC25A41 (ENSOARG00020019425)	KHSRP (ENSOARG00020019494) #30	GTF2F1 (ENSOARG00020019647) #31	PSPN (ENSOARG00020019711) #32
Goat	MODERN SPECIES	26	PRAM1 (ENSCHIG00000006566)	ZNF414 (ENSCHIG00000003887)	MYO1F (ENSCHIG00000015009)	ADAMTS10 (ENSCHIG00000025021)	ACTL9 (ENSCHIG00000009183)	OR2Z1 (ENSCHIG00000009977)	ENSCHIG00000015823	ENSCHIG00000015838	ENSCHIG00000022235	ENSCHIG00000026329	ADGRE1 (ENSCHIG00000021647) #17	VAV1 (ENSCHIG00000011155) #18	SH2D3A (ENSCHIG00000025393) #19	TRIP10 (ENSCHIG00000022584) #20	GPR108 (ENSCHIG00000009700) #21	C3 (ENSCHIG00000008320) #22	TNFSF14 (ENSCHIG00000020880) #23	ENSCHIG00000026611 #24	ENSCHIG00000004302 #25	TUBB4A (ENSCHIG00000020195) #26	DENND1C (ENSCHIG00000017569) #27	CRB3 (ENSCHIG00000023021) #28	SLC25A23 (ENSCHIG00000008013) #29	SLC25A41 (ENSCHIG00000017363)	KHSRP (ENSCHIG00000027053) #30	ENSCHIG00000011986 #31	PSPN (ENSCHIG00000018638) #32	ALKBH7 (ENSCHIG00000024761) #33	CLPP (ENSCHIG00000023189) #34	ACER1 (ENSCHIG00000008361) #35	ENSCHIG00000016868
Bovinae	ANCESTRAL SPECIES	2	ENSGT00390000006876	ENSGT00940000158870	ENSGT00940000158404	ENSGT00940000164108.b	ENSGT00940000163012	ENSGT01090000260018.B.a.b	ENSGT00940000154431.e.a.a.a.a	ENSGT00940000154431.e.a.a.a.b	ENSGT00950000183005.b.c.b.ab #16	ENSGT00940000162163	ENSGT00940000161354 #17	ENSGT00940000159125 #18	ENSGT00940000154130.a.a.a #19	ENSGT00950000183047.c.a #20	ENSGT00940000160446 #21	ENSGT00940000154063.C.a.b #22	ENSGT01060000248544.a.a.b.a.a #23	ENSGT00390000006744 #24	ENSGT00390000006244 #25	ENSGT00940000164486	ENSGT00940000161972 #26	ENSGT01100000263474.a.b.b.e.a.a.a.a.u.b.b	ENSGT00940000161573 #27	ENSGT00950000183101.a.b.a #28	ENSGT00940000159428 #29	ENSGT00940000162419	ENSGT00940000156051 #30	ENSGT00440000038032 #31	ENSGT00950000182993.B.b #32	ENSGT00390000014585 #33	ENSGT00390000005830 #34
Bos	ANCESTRAL SPECIES	3	ENSGT00390000006876	ENSGT00940000158870	ENSGT00940000158404	ENSGT00940000164108.b	ENSGT00940000163012	ENSGT01090000260018.B.a.b	ENSGT00940000154431.e.a.a.a.a	ENSGT00940000154431.e.a.a.a.b	ENSGT00950000183005.b.c.b.ab #16	ENSGT00940000162163	ENSGT00940000161354 #17	ENSGT00940000159125 #18	ENSGT00940000154130.a.a.a #19	ENSGT00950000183047.c.a #20	ENSGT00940000160446 #21	ENSGT00940000154063.C.a.b #22	ENSGT01060000248544.a.a.b.a.a #23	ENSGT00390000006744 #24	ENSGT00390000006244 #25	ENSGT00940000164486	ENSGT00940000161972 #26	ENSGT01100000263474.a.b.b.e.a.a.a.a.u.b.b	ENSGT00940000161573 #27	ENSGT00950000183101.a.b.a #28	ENSGT00940000159428 #29	ENSGT00940000162419	ENSGT00940000156051 #30	ENSGT00440000038032 #31	ENSGT00950000182993.B.b #32	ENSGT00390000014585 #33	ENSGT00390000005830 #34
Bos_a	ANCESTRAL SPECIES	2	ENSGT00390000006876	ENSGT00940000158870	ENSGT00940000158404	ENSGT00940000164108.b	ENSGT00940000163012	ENSGT01090000260018.B.a.b	ENSGT00940000154431.e.a.a.a.a	ENSGT00940000154431.e.a.a.a.b	ENSGT00950000183005.b.c.b.ab #16	ENSGT00940000162163	ENSGT00940000161354 #17	ENSGT00940000159125 #18	ENSGT00940000154130.a.a.a #19	ENSGT00950000183047.c.a #20	ENSGT00940000160446 #21	ENSGT00940000154063.C.a.b #22	ENSGT01060000248544.a.a.b.a.a #23	ENSGT00390000006744 #24	ENSGT00390000006244 #25	ENSGT00940000164486	ENSGT00940000161972 #26	ENSGT01100000263474.a.b.b.e.a.a.a.a.u.b.b	ENSGT00940000161573 #27	ENSGT00950000183101.a.b.a #28	ENSGT00940000159428 #29	ENSGT00940000162419	ENSGT00940000156051 #30	ENSGT00440000038032 #31	ENSGT00950000182993.B.b #32	ENSGT00390000014585 #33	ENSGT00390000005830 #34
Wild yak	MODERN SPECIES	346	PRAM1 (ENSBMUG00000025757)	ZNF414 (ENSBMUG00000025755)	MYO1F (ENSBMUG00000025738)	ADAMTS10 (ENSBMUG00000025711)	ACTL9 (ENSBMUG00000025640)	OR2Z1 (ENSBMUG00000025633)	ENSBMUG00000025627	ENSBMUG00000025621 #16	ENSBMUG00000025618	ENSBMUG00000025598	ADGRE1 (ENSBMUG00000025559) #17	VAV1 (ENSBMUG00000025463) #18	SH2D3A (ENSBMUG00000025416) #19	TRIP10 (ENSBMUG00000025404) #20	GPR108 (ENSBMUG00000025394) #21	C3 (ENSBMUG00000025382) #22
Domestic yak	MODERN SPECIES	27	ZNF414 (ENSBGRG00000025292)	MYO1F (ENSBGRG00000025321)	ADAMTS10 (ENSBGRG00000025401)	ENSBGRG00000025413	ACTL9 (ENSBGRG00000025424)	OR2Z1 (ENSBGRG00000025427)	ENSBGRG00000025442	ENSBGRG00000025450 #16	ENSBGRG00000025464	ENSBGRG00000025483	ADGRE1 (ENSBGRG00000025588) #17	VAV1 (ENSBGRG00000025777) #18	SH2D3A (ENSBGRG00000025904) #19	TRIP10 (ENSBGRG00000025920) #20	GPR108 (ENSBGRG00000025958) #21	C3 (ENSBGRG00000025983) #22	TNFSF14 (ENSBGRG00000025997) #23	CD70 (ENSBGRG00000026005) #24	ENSBGRG00000026014 #25	ENSBGRG00000026022	TUBB4A (ENSBGRG00000026030) #26	ENSBGRG00000000364	DENND1C (ENSBGRG00000000393) #27	CRB3 (ENSBGRG00000000409) #28	SLC25A23 (ENSBGRG00000000430) #29	SLC25A41 (ENSBGRG00000000480)	KHSRP (ENSBGRG00000000517) #30	GTF2F1 (ENSBGRG00000000661) #31	PSPN (ENSBGRG00000000694) #32	ALKBH7 (ENSBGRG00000000719) #33	CLPP (ENSBGRG00000000753) #34
Bos_b	ANCESTRAL SPECIES	2	ENSGT00390000006876	ENSGT00940000158870	ENSGT00940000158404	ENSGT00940000164108.b	ENSGT00940000163012	ENSGT01090000260018.B.a.b	ENSGT00940000154431.e.a.a.a.a	ENSGT00940000154431.e.a.a.a.b	ENSGT00390000018316.b.b.h	ENSGT00940000162163	ENSGT00940000161354 #17	ENSGT00940000159125 #18	ENSGT00940000154130.a.a.a #19	ENSGT00950000183047.c.a #20	ENSGT00940000160446 #21	ENSGT00940000154063.C.a.b #22	ENSGT01060000248544.a.a.b.a.a #23	ENSGT00390000006744 #24	ENSGT00390000006244 #25	ENSGT00940000164486	ENSGT00940000161972 #26	ENSGT01100000263474.a.b.b.e.a.a.a.a.u.b.b	ENSGT00940000161573 #27	ENSGT00950000183101.a.b.a #28	ENSGT00940000159428 #29	ENSGT00940000162419	ENSGT00940000156051 #30	ENSGT00440000038032 #31	ENSGT00950000182993.B.b #32	ENSGT00390000014585 #33	ENSGT00390000005830 #34
Cow	MODERN SPECIES	26	ZNF414 (ENSBTAG00000007660)	MYO1F (ENSBTAG00000007661)	ADAMTS10 (ENSBTAG00000014207)	ACTL9 (ENSBTAG00000011255)	OR2Z1 (ENSBTAG00000051841)	ENSBTAG00000054873	ENSBTAG00000053612	ENSBTAG00000052571	ENSBTAG00000049797	ENSBTAG00000038981	ADGRE1 (ENSBTAG00000007901) #17	VAV1 (ENSBTAG00000039160) #18	SH2D3A (ENSBTAG00000013857) #19	TRIP10 (ENSBTAG00000047424) #20	GPR108 (ENSBTAG00000017291) #21	C3 (ENSBTAG00000017280) #22	TNFSF14 (ENSBTAG00000012223) #23	CD70 (ENSBTAG00000009752) #24	TNFSF9 (ENSBTAG00000046266) #25	ENSBTAG00000054505	TUBB4A (ENSBTAG00000021013) #26	ENSBTAG00000051810	DENND1C (ENSBTAG00000031809) #27	CRB3 (ENSBTAG00000051530) #28	SLC25A23 (ENSBTAG00000003491) #29	SLC25A41 (ENSBTAG00000020017)	KHSRP (ENSBTAG00000021018) #30	GTF2F1 (ENSBTAG00000021016) #31	PSPN (ENSBTAG00000031794) #32	ALKBH7 (ENSBTAG00000025540) #33	CLPP (ENSBTAG00000014712) #34
Hybrid Bos Indicus	MODERN SPECIES	26	HNRNPM (ENSBIXG00005010359)	PRAM1 (ENSBIXG00005010383)	ZNF414 (ENSBIXG00005010399)	MYO1F (ENSBIXG00005000747)	ADAMTS10 (ENSBIXG00005000887)	NFILZ (ENSBIXG00005010493)	ACTL9 (ENSBIXG00005010501)	OR2Z1 (ENSBIXG00005000894)	ENSBIXG00005010532	ENSBIXG00005000932	ENSBIXG00005010956 #17	VAV1 (ENSBIXG00005001021) #18	SH2D3A (ENSBIXG00005011216) #19	TRIP10 (ENSBIXG00005001055) #20	GPR108 (ENSBIXG00005011263) #21	C3 (ENSBIXG00005001069) #22	TNFSF14 (ENSBIXG00005011303) #23	CD70 (ENSBIXG00005011321) #24	TNFSF9 (ENSBIXG00005001080) #25	ENSBIXG00005001088	ENSBIXG00005011344	TUBB4A (ENSBIXG00005001091) #26	DENND1C (ENSBIXG00005011411) #27	CRB3 (ENSBIXG00005000466) #28	SLC25A23 (ENSBIXG00005011521) #29	SLC25A41 (ENSBIXG00005011565)	KHSRP (ENSBIXG00005011664) #30	GTF2F1 (ENSBIXG00005001151) #31	PSPN (ENSBIXG00005011696) #32	ALKBH7 (ENSBIXG00005011712) #33	CLPP (ENSBIXG00005011763) #34
American bison	MODERN SPECIES	3349	MYO1F (ENSBBBG00000005170)	ENSBBBG00000005155	ENSBBBG00000019753	ACTL9 (ENSBBBG00000019764)	OR2Z1 (ENSBBBG00000005355)	ENSBBBG00000019780	ENSBBBG00000005363	ENSBBBG00000019818 #16	ENSBBBG00000019840	ENSBBBG00000019855	ADGRE1 (ENSBBBG00000007466) #17	VAV1 (ENSBBBG00000020126) #18	SH2D3A (ENSBBBG00000020159) #19	TRIP10 (ENSBBBG00000005456) #20	ENSBBBG00000005466 #21	C3 (ENSBBBG00000008781) #22	TNFSF14 (ENSBBBG00000007961) #23	CD70 (ENSBBBG00000020534) #24	ENSBBBG00000007050	TUBB4A (ENSBBBG00000000506) #26	ENSBBBG00000020590	DENND1C (ENSBBBG00000007187) #27	CRB3 (ENSBBBG00000020657) #28	SLC25A23 (ENSBBBG00000020672) #29	SLC25A41 (ENSBBBG00000020681)	KHSRP (ENSBBBG00000008202) #30	GTF2F1 (ENSBBBG00000020826) #31	ALKBH7 (ENSBBBG00000020847) #33	ENSBBBG00000008371 #32	CLPP (ENSBBBG00000020882) #34	ENSBBBG00000005623 #35
Siberian musk deer	MODERN SPECIES	99	MYO1F (ENSMMSG00000003634)	ADAMTS10 (ENSMMSG00000003662)	ACTL9 (ENSMMSG00000003682)	OR2Z1 (ENSMMSG00000003688)	ENSMMSG00000003695	ENSMMSG00000003703	ENSMMSG00000003728 #16	ENSMMSG00000006263	ENSMMSG00000006306	ADGRE1 (ENSMMSG00000006398) #17	ENSMMSG00000006913	VAV1 (ENSMMSG00000006975) #18	SH2D3A (ENSMMSG00000007295) #19	TRIP10 (ENSMMSG00000007373) #20	GPR108 (ENSMMSG00000007474) #21	C3 (ENSMMSG00000007580) #22	TNFSF14 (ENSMMSG00000007629) #23	CD70 (ENSMMSG00000007672) #24	ENSMMSG00000007708	ENSMMSG00000007741	TNFSF9 (ENSMMSG00000007760) #25	ENSMMSG00000007773	TUBB4A (ENSMMSG00000007812) #26	DENND1C (ENSMMSG00000007861) #27	ENSMMSG00000008095 #28	SLC25A23 (ENSMMSG00000008146) #29	SLC25A41 (ENSMMSG00000008181)	KHSRP (ENSMMSG00000008232) #30	GTF2F1 (ENSMMSG00000008317) #31	PSPN (ENSMMSG00000008350) #32	ALKBH7 (ENSMMSG00000008382) #33
Camelidae	ANCESTRAL SPECIES	61	ENSGT00940000159130	ENSGT00950000183036.b	ENSGT00940000162948	ENSGT00390000014215	ENSGT00390000000427	ENSGT00940000157375	ENSGT00940000155404 #15	ENSGT00950000183005.b.c.b #16	ENSGT00940000154431.e.a.a.a	ENSGT00940000162163	ENSGT00940000161354 #17	ENSGT00940000159125 #18	ENSGT00940000154130.a.a.a #19	ENSGT00950000183047.c.a #20	ENSGT00940000160446 #21	ENSGT00940000154063.C.a.b #22	ENSGT01060000248544.a.a.b.a.a #23	ENSGT00390000006744 #24	ENSGT00940000161972 #26	ENSGT00940000161573 #27	ENSGT00950000183101.a.b.a #28	ENSGT00940000159428 #29
Arabian camel	MODERN SPECIES	14	MCOLN1 (ENSCDRG00005016454)	ZNF358 (ENSCDRG00005016504)	TEX45 (ENSCDRG00005016523)	PEX11G (ENSCDRG00005016590)	ARHGEF18 (ENSCDRG00005016630)	INSR (ENSCDRG00005016879) #15	ENSCDRG00005017114 #16	ENSCDRG00005017145	ENSCDRG00005017166	ENSCDRG00005017246	ADGRE1 (ENSCDRG00005017351) #17	VAV1 (ENSCDRG00005017664) #18	SH2D3A (ENSCDRG00005017906) #19	TRIP10 (ENSCDRG00005017930) #20	GPR108 (ENSCDRG00005017978) #21	C3 (ENSCDRG00005018821) #22	TNFSF14 (ENSCDRG00005021938) #23	CD70 (ENSCDRG00005021939) #24	TUBB4A (ENSCDRG00005021940) #26	DENND1C (ENSCDRG00005021941) #27	CRB3 (ENSCDRG00005021942) #28	SLC25A23 (ENSCDRG00005021943) #29	SLC25A41 (ENSCDRG00005021944)	KHSRP (ENSCDRG00005021945) #30	ENSCDRG00005021946	GTF2F1 (ENSCDRG00005021947) #31	PSPN (ENSCDRG00005021948) #32	ALKBH7 (ENSCDRG00005021949) #33	CLPP (ENSCDRG00005021950) #34	ACER1 (ENSCDRG00005021951) #35	MLLT1 (ENSCDRG00005021952) #36
Alpaca	MODERN SPECIES	227																ENSVPAG00000006826 #22
Laurasiatheria_b	ANCESTRAL SPECIES	18	ENSGT00940000154595	ENSGT00530000063460.B	ENSGT00390000006876	ENSGT00940000158870	ENSGT00940000158404	ENSGT00940000164108.b	ENSGT00940000163012	ENSGT01090000260018.B.a.b	ENSGT00950000183005.b.c.b #16	ENSGT00940000162163	ENSGT00940000161354 #17	ENSGT00940000159125 #18	ENSGT00940000154130.a.a.a #19	ENSGT00950000183047.c.a #20	ENSGT00940000160446 #21	ENSGT00940000154063.C.a.b #22	ENSGT01060000248544.a.a.b.a.a #23	ENSGT00390000006744 #24	ENSGT00390000006244 #25	ENSGT00940000161972 #26	ENSGT00940000161573 #27	ENSGT00950000183101.a.b.a #28	ENSGT00940000159428 #29	ENSGT00940000162419	ENSGT00940000156051 #30	ENSGT00940000163693	ENSGT00440000038032 #31	ENSGT00950000182993.B.b #32	ENSGT00390000014585 #33	ENSGT00390000005830 #34	ENSGT00730000110920.b.a.a #35
Laurasiatheria_c	ANCESTRAL SPECIES	16	ENSGT00950000183036.b	ENSGT00940000162948	ENSGT00940000163677.a.b.a.a.b	ENSGT00390000014215	ENSGT00390000000427	ENSGT00940000157375	ENSGT00940000154146.b.b.b	ENSGT00940000155404 #15	ENSGT00950000183069.b	ENSGT00940000162163	ENSGT00940000161354 #17	ENSGT00940000159125 #18	ENSGT00940000154130.a.a.a #19	ENSGT00950000183047.c.a #20	ENSGT00940000160446 #21	ENSGT00940000154063.C.a.b #22	ENSGT01060000248544.a.a.b.a.a #23	ENSGT00390000006744 #24	ENSGT00390000006244 #25	ENSGT00940000161972 #26	ENSGT00940000161573 #27	ENSGT00950000183101.a.b.a #28	ENSGT00940000159428 #29	ENSGT00940000162419	ENSGT00940000156051 #30	ENSGT00940000163693	ENSGT00440000038032 #31	ENSGT00950000182993.B.b #32	ENSGT00390000014585 #33	ENSGT00390000005830 #34	ENSGT00730000110920.b.a.a #35
Chiroptera	ANCESTRAL SPECIES	31	ENSGT00940000159478	ENSGT00940000161659	ENSGT00940000158995	ENSGT00940000154595	ENSGT00530000063460.B	ENSGT00390000006876	ENSGT00940000158870	ENSGT00940000158404	ENSGT00940000164108.b	ENSGT00940000162163	ENSGT00940000161354 #17	ENSGT00940000159125 #18	ENSGT00940000154130.a.a.a #19	ENSGT00950000183047.c.a #20	ENSGT00940000160446 #21	ENSGT00940000154063.C.a.b #22	ENSGT01060000248544.a.a.b.a.a #23	ENSGT00390000006744 #24	ENSGT00390000006244 #25	ENSGT00940000161972 #26	ENSGT00940000161573 #27	ENSGT00950000183101.a.b.a #28	ENSGT00940000159428 #29	ENSGT00940000162419	ENSGT00940000156051 #30	ENSGT00940000163693	ENSGT00440000038032 #31	ENSGT00950000182993.B.b #32	ENSGT00390000014585 #33	ENSGT00390000005830 #34	ENSGT00730000110920.b.a.a #35
Megabat	MODERN SPECIES	361											ENSPVAG00000017910 #17	VAV1 (ENSPVAG00000017909) #18	SH2D3A (ENSPVAG00000017908) #19	TRIP10 (ENSPVAG00000017907) #20	GPR108 (ENSPVAG00000017906) #21	C3 (ENSPVAG00000017905) #22
Microchiroptera	ANCESTRAL SPECIES	30	ENSGT00940000159478	ENSGT00940000161659	ENSGT00940000158995	ENSGT00940000154595	ENSGT00530000063460.B	ENSGT00390000006876	ENSGT00940000158870	ENSGT00940000158404	ENSGT00940000164108.b	ENSGT00940000162163	ENSGT00940000161354 #17	ENSGT00940000159125 #18	ENSGT00940000154130.a.a.a #19	ENSGT00950000183047.c.a #20	ENSGT00940000160446 #21	ENSGT00940000154063.C.a.b #22	ENSGT01060000248544.a.a.b.a.a #23	ENSGT00390000006744 #24	ENSGT00390000006244 #25	ENSGT00940000161972 #26	ENSGT00940000161573 #27	ENSGT00950000183101.a.b.a #28	ENSGT00940000159428 #29	ENSGT00940000156051 #30	ENSGT00940000163693	ENSGT00440000038032 #31	ENSGT00950000182993.B.b #32	ENSGT00390000014585 #33	ENSGT00390000005830 #34	ENSGT00730000110920.b.a.a #35	ENSGT00940000158800 #36
Greater horseshoe bat	MODERN SPECIES	9	ANGPTL4 (ENSRFEG00010012980)	RAB11B (ENSRFEG00010013186)	MARCHF2 (ENSRFEG00010013268)	ENSRFEG00010013395	PRAM1 (ENSRFEG00010013477)	ZNF414 (ENSRFEG00010013523)	MYO1F (ENSRFEG00010013682)	ADAMTS10 (ENSRFEG00010013786)	ENSRFEG00010013846	ENSRFEG00010010435	ADGRE1 (ENSRFEG00010011348) #17	VAV1 (ENSRFEG00010012766) #18	SH2D3A (ENSRFEG00010012944) #19	TRIP10 (ENSRFEG00010013094) #20	GPR108 (ENSRFEG00010013722) #21	C3 (ENSRFEG00010013799) #22	TNFSF14 (ENSRFEG00010014416) #23	CD70 (ENSRFEG00010014470) #24	TNFSF9 (ENSRFEG00010014511) #25	TUBB4A (ENSRFEG00010014530) #26	DENND1C (ENSRFEG00010014718) #27	CRB3 (ENSRFEG00010014851) #28	SLC25A23 (ENSRFEG00010014934) #29	KHSRP (ENSRFEG00010015266) #30	ENSRFEG00010015355	GTF2F1 (ENSRFEG00010015531) #31	PSPN (ENSRFEG00010015585) #32	ALKBH7 (ENSRFEG00010015638) #33	CLPP (ENSRFEG00010015771) #34	ACER1 (ENSRFEG00010015824) #35	MLLT1 (ENSRFEG00010015888) #36
Microbat	DUPLICATION
Microbat	DUPLICATION
Microbat	DUPLICATION
Microbat	DUPLICATION
Microbat	DUPLICATION
Microbat	MODERN SPECIES	1830															ENSMLUG00000028875 #22	ENSMLUG00000025532 #22
Microbat	MODERN SPECIES	1278														ENSMLUG00000007422	ENSMLUG00000025160 #22	ENSMLUG00000027221 #22	TNFSF14 (ENSMLUG00000003450) #23	CD70 (ENSMLUG00000007323) #24	ENSMLUG00000022835	TNFSF9 (ENSMLUG00000011161) #25	TUBB4A (ENSMLUG00000015607) #26	DENND1C (ENSMLUG00000015589) #27	CRB3 (ENSMLUG00000015582) #28	SLC25A41 (ENSMLUG00000015564)	SLC25A23 (ENSMLUG00000015572) #29	KHSRP (ENSMLUG00000015543) #30	GTF2F1 (ENSMLUG00000015530) #31	PSPN (ENSMLUG00000015527) #32	CLPP (ENSMLUG00000007981) #34	ENSMLUG00000014237 #35	MLLT1 (ENSMLUG00000014230) #36
Microbat	DUPLICATION
Microbat	MODERN SPECIES	1278															ENSMLUG00000007422	ENSMLUG00000025160 #22	ENSMLUG00000027221 #22	TNFSF14 (ENSMLUG00000003450) #23	CD70 (ENSMLUG00000007323) #24	ENSMLUG00000022835	TNFSF9 (ENSMLUG00000011161) #25	TUBB4A (ENSMLUG00000015607) #26	DENND1C (ENSMLUG00000015589) #27	CRB3 (ENSMLUG00000015582) #28	SLC25A41 (ENSMLUG00000015564)	SLC25A23 (ENSMLUG00000015572) #29	KHSRP (ENSMLUG00000015543) #30	GTF2F1 (ENSMLUG00000015530) #31	PSPN (ENSMLUG00000015527) #32	CLPP (ENSMLUG00000007981) #34	ENSMLUG00000014237 #35
Microbat	MODERN SPECIES	201																ENSMLUG00000028121 #22
Microbat	MODERN SPECIES	2266																ENSMLUG00000030607 #22
Microbat	MODERN SPECIES	1830																ENSMLUG00000028875 #22	ENSMLUG00000025532 #22
Microbat	DUPLICATION
Microbat	MODERN SPECIES	2189																ENSMLUG00000023050 #22
Microbat	MODERN SPECIES	1665												ENSMLUG00000012991 #17	VAV1 (ENSMLUG00000000153) #18	SH2D3A (ENSMLUG00000008955) #19	TRIP10 (ENSMLUG00000008934) #20	ENSMLUG00000011254 #22
Equus	DUPLICATION
Equus	ANCESTRAL SPECIES	34	ENSGT00950000183036.b	ENSGT00940000162948	ENSGT00940000163677.a.b.a.a.b	ENSGT00390000014215	ENSGT00390000000427	ENSGT00940000157375	ENSGT00940000154146.b.b.b	ENSGT00940000155404 #15	ENSGT00950000183069.b.h	ENSGT00940000162163	ENSGT00940000161354 #17	ENSGT00940000159125 #18	ENSGT00940000154130.a.a.a #19	ENSGT00950000183047.c.a #20	ENSGT00940000160446 #21	ENSGT00940000154063.C.a.b.`c #22	ENSGT01060000248544.a.a.b.a.a #23	ENSGT00390000006744 #24	ENSGT00390000006244 #25	ENSGT00940000161972 #26	ENSGT00940000161573 #27	ENSGT00950000183101.a.b.a #28	ENSGT00940000159428 #29	ENSGT00940000162419	ENSGT00940000163693	ENSGT00440000038032 #31	ENSGT00950000182993.B.b #32	ENSGT00390000014585 #33	ENSGT00390000005830 #34	ENSGT00730000110920.b.a.a #35	ENSGT00940000158800 #36
Donkey	MODERN SPECIES	12	MCOLN1 (ENSEASG00005013805)	ENSEASG00005036016	ZNF358 (ENSEASG00005013796)	TEX45 (ENSEASG00005013791)	PEX11G (ENSEASG00005025057)	ARHGEF18 (ENSEASG00005013760)	INSR (ENSEASG00005013740) #15	ENSEASG00005002163	ENSEASG00005013698	ADGRE1 (ENSEASG00005013682) #17	VAV1 (ENSEASG00005011821) #18	SH2D3A (ENSEASG00005011718) #19	TRIP10 (ENSEASG00005011533) #20	GPR108 (ENSEASG00005011473) #21	ENSEASG00005000728 #22	ENSEASG00005038643 #22	TNFSF14 (ENSEASG00005025378) #23	CD70 (ENSEASG00005000353) #24	TNFSF9 (ENSEASG00005028605) #25	TUBB4A (ENSEASG00005027092) #26	DENND1C (ENSEASG00005000214) #27	CRB3 (ENSEASG00005030191) #28	SLC25A23 (ENSEASG00005000075) #29	SLC25A41 (ENSEASG00005023116)	ENSEASG00005028550	GTF2F1 (ENSEASG00005023112) #31	PSPN (ENSEASG00005023110) #32	ALKBH7 (ENSEASG00005027385) #33	CLPP (ENSEASG00005023108) #34	ACER1 (ENSEASG00005023107) #35	MLLT1 (ENSEASG00005023105) #36
Horse	MODERN SPECIES	28	MCOLN1 (ENSECAG00000016645)	ENSECAG00000034713	ZNF358 (ENSECAG00000035156)	TEX45 (ENSECAG00000022297)	PEX11G (ENSECAG00000023310)	ARHGEF18 (ENSECAG00000039852)	ENSECAG00000059814	INSR (ENSECAG00000010127) #15	ENSECAG00000036129	ENSECAG00000015885	ADGRE1 (ENSECAG00000017237) #17	VAV1 (ENSECAG00000014896) #18	SH2D3A (ENSECAG00000012075) #19	TRIP10 (ENSECAG00000017817) #20	GPR108 (ENSECAG00000014466) #21	C3 (ENSECAG00000057145) #22	TNFSF14 (ENSECAG00000017522) #23	ENSECAG00000058070	TNFSF9 (ENSECAG00000022714) #25	TUBB4A (ENSECAG00000037214) #26	DENND1C (ENSECAG00000010964) #27	CRB3 (ENSECAG00000010143) #28	SLC25A23 (ENSECAG00000020970) #29	SLC25A41 (ENSECAG00000018003)	KHSRP (ENSECAG00000018305) #30	ENSECAG00000016799	GTF2F1 (ENSECAG00000000246) #31	PSPN (ENSECAG00000001763) #32	ALKBH7 (ENSECAG00000023627) #33	CLPP (ENSECAG00000023054) #34	ACER1 (ENSECAG00000022733) #35
Equus	ANCESTRAL SPECIES																	ENSGT00940000154063.C.a.b.ac #22
Donkey	MODERN SPECIES	12	PNPLA6 (ENSEASG00005013816)	MCOLN1 (ENSEASG00005013805)	ENSEASG00005036016	ZNF358 (ENSEASG00005013796)	TEX45 (ENSEASG00005013791)	PEX11G (ENSEASG00005025057)	ARHGEF18 (ENSEASG00005013760)	INSR (ENSEASG00005013740) #15	ENSEASG00005002163	ENSEASG00005013698	ADGRE1 (ENSEASG00005013682) #17	VAV1 (ENSEASG00005011821) #18	SH2D3A (ENSEASG00005011718) #19	TRIP10 (ENSEASG00005011533) #20	GPR108 (ENSEASG00005011473) #21	ENSEASG00005000728 #22	ENSEASG00005038643 #22	TNFSF14 (ENSEASG00005025378) #23	CD70 (ENSEASG00005000353) #24	TNFSF9 (ENSEASG00005028605) #25	TUBB4A (ENSEASG00005027092) #26	DENND1C (ENSEASG00005000214) #27	CRB3 (ENSEASG00005030191) #28	SLC25A23 (ENSEASG00005000075) #29	SLC25A41 (ENSEASG00005023116)	ENSEASG00005028550	GTF2F1 (ENSEASG00005023112) #31	PSPN (ENSEASG00005023110) #32	ALKBH7 (ENSEASG00005027385) #33	CLPP (ENSEASG00005023108) #34	ACER1 (ENSEASG00005023107) #35
Carnivora	ANCESTRAL SPECIES	6	ENSGT00940000154595	ENSGT00530000063460.B	ENSGT00390000006876	ENSGT00940000158870	ENSGT00940000158404	ENSGT00940000164108.b	ENSGT00940000163012	ENSGT01090000260018.B.a.b	ENSGT00950000183005.b.c.b #16	ENSGT00940000162163	ENSGT00940000161354 #17	ENSGT00940000159125 #18	ENSGT00940000154130.a.a.a #19	ENSGT00950000183047.c.a #20	ENSGT00940000160446 #21	ENSGT00940000154063.C.a.b #22	ENSGT01060000248544.a.a.b.a.a #23	ENSGT00390000006744 #24	ENSGT00390000006244 #25	ENSGT00940000161972 #26	ENSGT00940000161573 #27	ENSGT00950000183101.a.b.a #28	ENSGT00940000159428 #29	ENSGT00940000162419	ENSGT00940000156051 #30	ENSGT00940000163693	ENSGT00440000038032 #31	ENSGT00950000182993.B.b #32	ENSGT00390000014585 #33	ENSGT00390000005830 #34	ENSGT00730000110920.b.a.a #35
Felidae	DUPLICATION
Felidae	DUPLICATION
Felidae	ANCESTRAL SPECIES	21	ENSGT00530000063460.B	ENSGT00390000006876	ENSGT00940000158870	ENSGT00940000158404	ENSGT00940000164108.b	ENSGT00940000163012	ENSGT01090000260018.B.a.b	ENSGT00950000183005.b.c.b #16	ENSGT00940000162163	ENSGT00940000161354 #17	ENSGT00940000159125 #18	ENSGT00940000154130.a.a.a #19	ENSGT00950000183047.c.a #20	ENSGT00940000160446 #21	ENSGT00940000154063.C.a.b.cc #22	ENSGT00940000154063.C.a.b.bc.a #22	ENSGT00940000154063.C.a.b.bc.b #22	ENSGT01060000248544.a.a.b.a.a #23	ENSGT00390000006744 #24	ENSGT00390000006244 #25	ENSGT00940000161972 #26	ENSGT00940000161573 #27	ENSGT00950000183101.a.b.a.b #28	ENSGT00940000159428 #29	ENSGT00940000162419	ENSGT00940000156051 #30	ENSGT00440000038032 #31	ENSGT00950000182993.B.b #32	ENSGT00390000014585 #33	ENSGT00390000005830 #34	ENSGT00730000110920.b.a.a #35
Panthera	ANCESTRAL SPECIES	15	ENSGT00530000063460.B	ENSGT00390000006876	ENSGT00940000158870	ENSGT00940000158404	ENSGT00940000164108.b	ENSGT00940000163012	ENSGT01090000260018.B.a.b	ENSGT00950000183005.b.c.b #16	ENSGT00940000162163	ENSGT00940000161354 #17	ENSGT00940000159125 #18	ENSGT00940000154130.a.a.a #19	ENSGT00950000183047.c.a #20	ENSGT00940000160446 #21	ENSGT00940000154063.C.a.b.cc #22	ENSGT00940000154063.C.a.b.bc.a #22	ENSGT01060000248544.a.a.b.a.a #23	ENSGT00390000006744 #24	ENSGT00390000006244 #25	ENSGT00940000161972 #26	ENSGT00940000161573 #27	ENSGT00950000183101.a.b.a.b #28	ENSGT00940000159428 #29	ENSGT00940000162419	ENSGT00940000156051 #30	ENSGT00440000038032 #31	ENSGT00950000182993.B.b #32	ENSGT00390000014585 #33	ENSGT00390000005830 #34	ENSGT00730000110920.b.a.a #35	ENSGT00940000158800 #36
Panthera_a	ANCESTRAL SPECIES		ENSGT00530000063460.B	ENSGT00390000006876	ENSGT00940000158870	ENSGT00940000158404	ENSGT00940000164108.b	ENSGT00940000163012	ENSGT01090000260018.B.a.b	ENSGT00950000183005.b.c.b #16	ENSGT00940000162163	ENSGT00940000161354 #17	ENSGT00940000159125 #18	ENSGT00940000154130.a.a.a #19	ENSGT00950000183047.c.a #20	ENSGT00940000160446 #21	ENSGT00940000154063.C.a.b.cc #22	ENSGT00940000154063.C.a.b.bc.a #22	ENSGT00940000154063.C.a.b.bc.b #22	ENSGT01060000248544.a.a.b.a.a #23	ENSGT00390000006744 #24	ENSGT00390000006244 #25	ENSGT00940000161972 #26	ENSGT00940000161573 #27	ENSGT00950000183101.a.b.a.b #28	ENSGT00940000159428 #29	ENSGT00940000162419	ENSGT00940000156051 #30	ENSGT00440000038032 #31	ENSGT00950000182993.B.b #32	ENSGT00390000014585 #33	ENSGT00390000005830 #34	ENSGT00730000110920.b.a.a #35
leopard	MODERN SPECIES	284											VAV1 (ENSPPRG00000001355) #18	SH2D3A (ENSPPRG00000001596) #19	TRIP10 (ENSPPRG00000001959) #20	GPR108 (ENSPPRG00000002611) #21	ENSPPRG00000002993 #22	ENSPPRG00000004960 #22	ENSPPRG00000005818 #22
Tiger	MODERN SPECIES	54											VAV1 (ENSPTIG00000019176) #18	SH2D3A (ENSPTIG00000007967) #19	TRIP10 (ENSPTIG00000009104) #20	GPR108 (ENSPTIG00000012912) #21	ENSPTIG00000015516 #22	ENSPTIG00000010121 #22	TNFSF14 (ENSPTIG00000013537) #23	ENSPTIG00000014863	DENND1C (ENSPTIG00000015765) #27	SLC25A23 (ENSPTIG00000020081) #29	SLC25A41 (ENSPTIG00000020410)	GTF2F1 (ENSPTIG00000004277) #31	ENSPTIG00000006413 #33	ENSPTIG00000007112	ACER1 (ENSPTIG00000007573) #35	MLLT1 (ENSPTIG00000008740) #36	ACSBG2 (ENSPTIG00000010163) #37	RFX2 (ENSPTIG00000013487)	RANBP3 (ENSPTIG00000016728)	CAPS (ENSPTIG00000021210)	ENSPTIG00000021327
Cat	MODERN SPECIES	1	ANGPTL4 (ENSFCAG00000015215)	RAB11B (ENSFCAG00000015216)	MARCHF2 (ENSFCAG00000015217)	HNRNPM (ENSFCAG00000015218)	ZNF414 (ENSFCAG00000015220)	MYO1F (ENSFCAG00000015221)	ADAMTS10 (ENSFCAG00000015222)	ENSFCAG00000048545	ACTL9 (ENSFCAG00000027714)	OR2Z1 (ENSFCAG00000052785)	ENSFCAG00000000243	ADGRE1 (ENSFCAG00000005054) #17	VAV1 (ENSFCAG00000005052) #18	SH2D3A (ENSFCAG00000026188) #19	TRIP10 (ENSFCAG00000005047) #20	ENSFCAG00000048073 #22	GPR108 (ENSFCAG00000018222) #21	ENSFCAG00000046278 #22	TNFSF14 (ENSFCAG00000005040) #23	CD70 (ENSFCAG00000028989) #24	TNFSF9 (ENSFCAG00000038600) #25	TUBB4A (ENSFCAG00000010269) #26	DENND1C (ENSFCAG00000012514) #27	CRB3 (ENSFCAG00000041058) #28	SLC25A41 (ENSFCAG00000025463)	KHSRP (ENSFCAG00000003731) #30	GTF2F1 (ENSFCAG00000012512) #31	PSPN (ENSFCAG00000043004) #32	ALKBH7 (ENSFCAG00000012510) #33	CLPP (ENSFCAG00000012509) #34	ACER1 (ENSFCAG00000040566) #35
Felidae	ANCESTRAL SPECIES	21	ENSGT00390000006876	ENSGT00940000158870	ENSGT00940000158404	ENSGT00940000164108.b	ENSGT00940000163012	ENSGT01090000260018.B.a.b	ENSGT00950000183005.b.c.b #16	ENSGT00940000162163	ENSGT00940000161354 #17	ENSGT00940000159125 #18	ENSGT00940000154130.a.a.a #19	ENSGT00950000183047.c.a #20	ENSGT00940000160446 #21	ENSGT00940000154063.C.a.b.cc #22	ENSGT00940000154063.C.a.b.bc.a #22	ENSGT00940000154063.C.a.b.bc.b #22	ENSGT01060000248544.a.a.b.a.a #23	ENSGT00390000006744 #24	ENSGT00390000006244 #25	ENSGT00940000161972 #26	ENSGT00940000161573 #27	ENSGT00950000183101.a.b.a.b #28	ENSGT00940000159428 #29	ENSGT00940000162419	ENSGT00940000156051 #30	ENSGT00440000038032 #31	ENSGT00950000182993.B.b #32	ENSGT00390000014585 #33	ENSGT00390000005830 #34	ENSGT00730000110920.b.a.a #35	ENSGT00940000158800 #36
Cat	MODERN SPECIES	1	MARCHF2 (ENSFCAG00000015217)	HNRNPM (ENSFCAG00000015218)	ZNF414 (ENSFCAG00000015220)	MYO1F (ENSFCAG00000015221)	ADAMTS10 (ENSFCAG00000015222)	ENSFCAG00000048545	ACTL9 (ENSFCAG00000027714)	OR2Z1 (ENSFCAG00000052785)	ENSFCAG00000000243	ADGRE1 (ENSFCAG00000005054) #17	VAV1 (ENSFCAG00000005052) #18	SH2D3A (ENSFCAG00000026188) #19	TRIP10 (ENSFCAG00000005047) #20	ENSFCAG00000048073 #22	GPR108 (ENSFCAG00000018222) #21	ENSFCAG00000046278 #22	TNFSF14 (ENSFCAG00000005040) #23	CD70 (ENSFCAG00000028989) #24	TNFSF9 (ENSFCAG00000038600) #25	TUBB4A (ENSFCAG00000010269) #26	DENND1C (ENSFCAG00000012514) #27	CRB3 (ENSFCAG00000041058) #28	SLC25A41 (ENSFCAG00000025463)	KHSRP (ENSFCAG00000003731) #30	GTF2F1 (ENSFCAG00000012512) #31	PSPN (ENSFCAG00000043004) #32	ALKBH7 (ENSFCAG00000012510) #33	CLPP (ENSFCAG00000012509) #34	ACER1 (ENSFCAG00000040566) #35	MLLT1 (ENSFCAG00000023537) #36	ENSFCAG00000027464
Panthera	ANCESTRAL SPECIES																	ENSGT00940000154063.C.a.b.bc.b #22
Panthera_a	ANCESTRAL SPECIES		ENSGT00390000006876	ENSGT00940000158870	ENSGT00940000158404	ENSGT00940000164108.b	ENSGT00940000163012	ENSGT01090000260018.B.a.b	ENSGT00950000183005.b.c.b #16	ENSGT00940000162163	ENSGT00940000161354 #17	ENSGT00940000159125 #18	ENSGT00940000154130.a.a.a #19	ENSGT00950000183047.c.a #20	ENSGT00940000160446 #21	ENSGT00940000154063.C.a.b.cc #22	ENSGT00940000154063.C.a.b.bc.a #22	ENSGT00940000154063.C.a.b.bc.b #22	ENSGT01060000248544.a.a.b.a.a #23	ENSGT00390000006744 #24	ENSGT00390000006244 #25	ENSGT00940000161972 #26	ENSGT00940000161573 #27	ENSGT00950000183101.a.b.a.b #28	ENSGT00940000159428 #29	ENSGT00940000162419	ENSGT00940000156051 #30	ENSGT00440000038032 #31	ENSGT00950000182993.B.b #32	ENSGT00390000014585 #33	ENSGT00390000005830 #34	ENSGT00730000110920.b.a.a #35	ENSGT00940000158800 #36
leopard	MODERN SPECIES	284										VAV1 (ENSPPRG00000001355) #18	SH2D3A (ENSPPRG00000001596) #19	TRIP10 (ENSPPRG00000001959) #20	GPR108 (ENSPPRG00000002611) #21	ENSPPRG00000002993 #22	ENSPPRG00000004960 #22	ENSPPRG00000005818 #22
Felidae	ANCESTRAL SPECIES	21	ENSGT00940000154595	ENSGT00530000063460.B	ENSGT00390000006876	ENSGT00940000158870	ENSGT00940000158404	ENSGT00940000164108.b	ENSGT00940000163012	ENSGT01090000260018.B.a.b	ENSGT00950000183005.b.c.b #16	ENSGT00940000162163	ENSGT00940000161354 #17	ENSGT00940000159125 #18	ENSGT00940000154130.a.a.a #19	ENSGT00950000183047.c.a #20	ENSGT00940000160446 #21	ENSGT00940000154063.C.a.b.cc #22	ENSGT00940000154063.C.a.b.bc.a #22	ENSGT00940000154063.C.a.b.bc.b #22	ENSGT01060000248544.a.a.b.a.a #23	ENSGT00390000006744 #24	ENSGT00390000006244 #25	ENSGT00940000161972 #26	ENSGT00940000161573 #27	ENSGT00950000183101.a.b.a.b #28	ENSGT00940000159428 #29	ENSGT00940000162419	ENSGT00940000156051 #30	ENSGT00440000038032 #31	ENSGT00950000182993.B.b #32	ENSGT00390000014585 #33	ENSGT00390000005830 #34
Panthera	ANCESTRAL SPECIES	15	ENSGT00940000154595	ENSGT00530000063460.B	ENSGT00390000006876	ENSGT00940000158870	ENSGT00940000158404	ENSGT00940000164108.b	ENSGT00940000163012	ENSGT01090000260018.B.a.b	ENSGT00950000183005.b.c.b #16	ENSGT00940000162163	ENSGT00940000161354 #17	ENSGT00940000159125 #18	ENSGT00940000154130.a.a.a #19	ENSGT00950000183047.c.a #20	ENSGT00940000160446 #21	ENSGT00940000154063.C.a.b.cc #22	ENSGT00940000154063.C.a.b.bc.a #22	ENSGT01060000248544.a.a.b.a.a #23	ENSGT00390000006744 #24	ENSGT00390000006244 #25	ENSGT00940000161972 #26	ENSGT00940000161573 #27	ENSGT00950000183101.a.b.a.b #28	ENSGT00940000159428 #29	ENSGT00940000162419	ENSGT00940000156051 #30	ENSGT00440000038032 #31	ENSGT00950000182993.B.b #32	ENSGT00390000014585 #33	ENSGT00390000005830 #34	ENSGT00730000110920.b.a.a #35
Panthera_a	ANCESTRAL SPECIES		ENSGT00940000154595	ENSGT00530000063460.B	ENSGT00390000006876	ENSGT00940000158870	ENSGT00940000158404	ENSGT00940000164108.b	ENSGT00940000163012	ENSGT01090000260018.B.a.b	ENSGT00950000183005.b.c.b #16	ENSGT00940000162163	ENSGT00940000161354 #17	ENSGT00940000159125 #18	ENSGT00940000154130.a.a.a #19	ENSGT00950000183047.c.a #20	ENSGT00940000160446 #21	ENSGT00940000154063.C.a.b.cc #22	ENSGT00940000154063.C.a.b.bc.a #22	ENSGT00940000154063.C.a.b.bc.b #22	ENSGT01060000248544.a.a.b.a.a #23	ENSGT00390000006744 #24	ENSGT00390000006244 #25	ENSGT00940000161972 #26	ENSGT00940000161573 #27	ENSGT00950000183101.a.b.a.b #28	ENSGT00940000159428 #29	ENSGT00940000162419	ENSGT00940000156051 #30	ENSGT00440000038032 #31	ENSGT00950000182993.B.b #32	ENSGT00390000014585 #33	ENSGT00390000005830 #34
leopard	MODERN SPECIES	284												VAV1 (ENSPPRG00000001355) #18	SH2D3A (ENSPPRG00000001596) #19	TRIP10 (ENSPPRG00000001959) #20	GPR108 (ENSPPRG00000002611) #21	ENSPPRG00000002993 #22	ENSPPRG00000004960 #22	ENSPPRG00000005818 #22
Tiger	MODERN SPECIES	54												VAV1 (ENSPTIG00000019176) #18	SH2D3A (ENSPTIG00000007967) #19	TRIP10 (ENSPTIG00000009104) #20	GPR108 (ENSPTIG00000012912) #21	ENSPTIG00000015516 #22	ENSPTIG00000010121 #22	TNFSF14 (ENSPTIG00000013537) #23	ENSPTIG00000014863	DENND1C (ENSPTIG00000015765) #27	SLC25A23 (ENSPTIG00000020081) #29	SLC25A41 (ENSPTIG00000020410)	GTF2F1 (ENSPTIG00000004277) #31	ENSPTIG00000006413 #33	ENSPTIG00000007112	ACER1 (ENSPTIG00000007573) #35	MLLT1 (ENSPTIG00000008740) #36	ACSBG2 (ENSPTIG00000010163) #37	RFX2 (ENSPTIG00000013487)	RANBP3 (ENSPTIG00000016728)	CAPS (ENSPTIG00000021210)
Caniformia	ANCESTRAL SPECIES	4	ENSGT00940000154595	ENSGT00530000063460.B	ENSGT00390000006876	ENSGT00940000158870	ENSGT00940000158404	ENSGT00940000164108.b	ENSGT00940000163012	ENSGT01090000260018.B.a.b	ENSGT00950000183005.b.c.b #16	ENSGT00940000162163	ENSGT00940000161354 #17	ENSGT00940000159125 #18	ENSGT00940000154130.a.a.a #19	ENSGT00950000183047.c.a #20	ENSGT00940000160446 #21	ENSGT00940000154063.C.a.b #22	ENSGT01060000248544.a.a.b.a.a #23	ENSGT00390000006744 #24	ENSGT00390000006244 #25	ENSGT00940000161972 #26	ENSGT00940000161573 #27	ENSGT00950000183101.a.b.a #28	ENSGT00940000159428 #29	ENSGT00940000162419	ENSGT00940000156051 #30	ENSGT00940000163693	ENSGT00440000038032 #31	ENSGT00950000182993.B.b #32	ENSGT00390000014585 #33	ENSGT00390000005830 #34	ENSGT00730000110920.b.a.a #35
Canidae	ANCESTRAL SPECIES		ENSGT00940000154595	ENSGT00530000063460.B	ENSGT00390000006876	ENSGT00940000158870	ENSGT00940000158404	ENSGT00940000164108.b	ENSGT00940000163012	ENSGT01090000260018.B.a.b	ENSGT00950000183005.b.c.b #16	ENSGT00940000162163	ENSGT00940000161354 #17	ENSGT00940000159125 #18	ENSGT00940000154130.a.a.a #19	ENSGT00950000183047.c.a #20	ENSGT00940000160446 #21	ENSGT00940000154063.C.a.b #22	ENSGT01060000248544.a.a.b.a.a #23	ENSGT00390000006744 #24	ENSGT00390000006244 #25	ENSGT00940000161972 #26	ENSGT00940000161573 #27	ENSGT00950000183101.a.b.a #28	ENSGT00940000159428 #29	ENSGT00940000162419	ENSGT00940000156051 #30	ENSGT00940000163693	ENSGT00440000038032 #31	ENSGT00950000182993.B.b #32	ENSGT00390000014585 #33	ENSGT00390000005830 #34	ENSGT00730000110920.b.a.a #35
Canis_lupus	ANCESTRAL SPECIES	1	ENSGT00940000154595	ENSGT00530000063460.B	ENSGT00390000006876	ENSGT00940000158870	ENSGT00940000158404	ENSGT00940000164108.b	ENSGT00940000163012	ENSGT01090000260018.B.a.b	ENSGT00950000183005.b.c.b #16	ENSGT00940000162163	ENSGT00940000161354 #17	ENSGT00940000159125 #18	ENSGT00940000154130.a.a.a #19	ENSGT00950000183047.c.a #20	ENSGT00940000160446 #21	ENSGT00940000154063.C.a.b #22	ENSGT01060000248544.a.a.b.a.a #23	ENSGT00390000006744 #24	ENSGT00390000006244 #25	ENSGT00940000161972 #26	ENSGT00940000161573 #27	ENSGT00950000183101.a.b.a #28	ENSGT00940000159428 #29	ENSGT00940000162419	ENSGT00940000156051 #30	ENSGT00940000163693	ENSGT00440000038032 #31	ENSGT00950000182993.B.b #32	ENSGT00390000014585 #33	ENSGT00390000005830 #34	ENSGT00730000110920.b.a.a #35
Dog	MODERN SPECIES	12	PRAM1 (ENSCAFG00845006650)	ZNF414 (ENSCAFG00845006747)	MYO1F (ENSCAFG00845006824)	ADAMTS10 (ENSCAFG00845006935)	NFILZ (ENSCAFG00845007057)	ACTL9 (ENSCAFG00845007084)	OR2Z1 (ENSCAFG00845007117)	ENSCAFG00845007164 #16	ENSCAFG00845007201	EMR4 (ENSCAFG00845007349)	ADGRE1 (ENSCAFG00845007962) #17	VAV1 (ENSCAFG00845008896) #18	SH2D3A (ENSCAFG00845009408) #19	TRIP10 (ENSCAFG00845009583) #20	GPR108 (ENSCAFG00845009759) #21	C3 (ENSCAFG00845010104) #22	TNFSF14 (ENSCAFG00845010429) #23	CD70 (ENSCAFG00845010526) #24	ENSCAFG00845010584 #25	TUBB4A (ENSCAFG00845010611) #26	DENND1C (ENSCAFG00845010702) #27	CRB3 (ENSCAFG00845010829) #28	SLC25A23 (ENSCAFG00845010879) #29	SLC25A41 (ENSCAFG00845010943)	KHSRP (ENSCAFG00845011000) #30	ENSCAFG00845011160	GTF2F1 (ENSCAFG00845011192) #31	PSPN (ENSCAFG00845011239) #32	ALKBH7 (ENSCAFG00845011262) #33	CLPP (ENSCAFG00845011300) #34	ACER1 (ENSCAFG00845011353) #35
Dingo	MODERN SPECIES	112	HNRNPM (ENSCAFG00020022128)	PRAM1 (ENSCAFG00020022122)	ZNF414 (ENSCAFG00020022119)	MYO1F (ENSCAFG00020021952)	ADAMTS10 (ENSCAFG00020021899)	ENSCAFG00020021888	ACTL9 (ENSCAFG00020021887)	OR2Z1 (ENSCAFG00020021885)	ENSCAFG00020021884 #16	ENSCAFG00020021878	ADGRE1 (ENSCAFG00020021872) #17	VAV1 (ENSCAFG00020021863) #18	SH2D3A (ENSCAFG00020021858) #19	TRIP10 (ENSCAFG00020021855) #20	GPR108 (ENSCAFG00020021851) #21	C3 (ENSCAFG00020019526) #22	TNFSF14 (ENSCAFG00020019380) #23	ENSCAFG00020019376	TNFSF9 (ENSCAFG00020019371) #25	TUBB4A (ENSCAFG00020019365) #26	DENND1C (ENSCAFG00020019317) #27	CRB3 (ENSCAFG00020019301) #28	SLC25A23 (ENSCAFG00020019295) #29	SLC25A41 (ENSCAFG00020019291)	KHSRP (ENSCAFG00020019133) #30	ENSCAFG00020019100	GTF2F1 (ENSCAFG00020019099) #31	PSPN (ENSCAFG00020019098) #32	ALKBH7 (ENSCAFG00020019096) #33	CLPP (ENSCAFG00020019094) #34	ACER1 (ENSCAFG00020019092) #35
Red fox	MODERN SPECIES	278											ADGRE1 (ENSVVUG00000015900) #17	VAV1 (ENSVVUG00000016047) #18	SH2D3A (ENSVVUG00000020490) #19	TRIP10 (ENSVVUG00000020538) #20	GPR108 (ENSVVUG00000022222) #21	C3 (ENSVVUG00000022719) #22	TNFSF14 (ENSVVUG00000026672) #23	CD70 (ENSVVUG00000026679) #24	ENSVVUG00000026681	ENSVVUG00000026683 #25	ENSVVUG00000026690 #26	DENND1C (ENSVVUG00000026697) #27	CRB3 (ENSVVUG00000026716) #28	SLC25A23 (ENSVVUG00000026718) #29	SLC25A41 (ENSVVUG00000026725)	KHSRP (ENSVVUG00000026737) #30	ENSVVUG00000026889	GTF2F1 (ENSVVUG00000026891) #31	PSPN (ENSVVUG00000026892) #32	ALKBH7 (ENSVVUG00000026894) #33	CLPP (ENSVVUG00000026895) #34
Caniformia_b	ANCESTRAL SPECIES	23	ENSGT00940000154595	ENSGT00530000063460.B	ENSGT00390000006876	ENSGT00940000158870	ENSGT00940000158404	ENSGT00940000164108.b	ENSGT00940000163012	ENSGT01090000260018.B.a.b	ENSGT00950000183005.b.c.b #16	ENSGT00940000162163	ENSGT00940000161354 #17	ENSGT00940000159125 #18	ENSGT00940000154130.a.a.a #19	ENSGT00950000183047.c.a #20	ENSGT00940000160446 #21	ENSGT00940000154063.C.a.b #22	ENSGT01060000248544.a.a.b.a.a #23	ENSGT00390000006744 #24	ENSGT00390000006244 #25	ENSGT00940000161972 #26	ENSGT00940000161573 #27	ENSGT00950000183101.a.b.a #28	ENSGT00940000159428 #29	ENSGT00940000162419	ENSGT00940000156051 #30	ENSGT00940000163693	ENSGT00440000038032 #31	ENSGT00950000182993.B.b #32	ENSGT00390000014585 #33	ENSGT00390000005830 #34	ENSGT00730000110920.b.a.a #35
Mustelinae	ANCESTRAL SPECIES	19	ENSGT00940000161659	ENSGT00940000158995	ENSGT00940000154595	ENSGT00390000006876	ENSGT00940000158870	ENSGT00940000158404	ENSGT00940000163012	ENSGT01090000260018.B.a.b	ENSGT00950000183005.b.c.b #16	ENSGT00940000162163	ENSGT00940000161354 #17	ENSGT00940000159125 #18	ENSGT00940000154130.a.a.a.d #19	ENSGT00950000183047.c.a #20	ENSGT00940000160446 #21	ENSGT00940000154063.C.a.b #22	ENSGT01060000248544.a.a.b.a.a #23	ENSGT00390000006744 #24	ENSGT00390000006244 #25	ENSGT00940000161972 #26	ENSGT00940000161573 #27	ENSGT00950000183101.a.b.a #28	ENSGT00940000159428 #29	ENSGT00940000162419	ENSGT00940000156051 #30	ENSGT00940000163693	ENSGT00440000038032 #31	ENSGT00950000182993.B.b #32	ENSGT00390000014585 #33	ENSGT00390000005830 #34	ENSGT00730000110920.b.a.a #35
Ferret	MODERN SPECIES	326	HNRNPM (ENSMPUG00000007241)	ZNF414 (ENSMPUG00000007231)	MYO1F (ENSMPUG00000007207)	ADAMTS10 (ENSMPUG00000007181)	ENSMPUG00000007174	ACTL9 (ENSMPUG00000007168)	OR2Z1 (ENSMPUG00000019707)	ENSMPUG00000007161 #16	ENSMPUG00000007102	ADGRE1 (ENSMPUG00000007088) #17	VAV1 (ENSMPUG00000007069) #18	SH2D3A (ENSMPUG00000007030) #19	GPR108 (ENSMPUG00000007018) #21	TRIP10 (ENSMPUG00000007008) #20	ENSMPUG00000019706	C3 (ENSMPUG00000006984) #22	TNFSF14 (ENSMPUG00000006977) #23	CD70 (ENSMPUG00000006973) #24	TNFSF9 (ENSMPUG00000006964) #25	TUBB4A (ENSMPUG00000006958) #26	DENND1C (ENSMPUG00000006946) #27	CRB3 (ENSMPUG00000006930) #28	SLC25A23 (ENSMPUG00000006918) #29	SLC25A41 (ENSMPUG00000006890)	KHSRP (ENSMPUG00000006615) #30	ENSMPUG00000006584	GTF2F1 (ENSMPUG00000006566) #31	CLPP (ENSMPUG00000006553) #34	ACER1 (ENSMPUG00000006546) #35	MLLT1 (ENSMPUG00000006527) #36	ENSMPUG00000006513
American mink	MODERN SPECIES	175	RAB11B (ENSNVIG00000017229)	MARH2 (ENSNVIG00000017185)	HNRNPM (ENSNVIG00000017104)	ZNF414 (ENSNVIG00000017053)	MYO1F (ENSNVIG00000016901)	ADAMTS10 (ENSNVIG00000016863)	ENSNVIG00000016819 #16	ENSNVIG00000016802	ENSNVIG00000016792	ENSNVIG00000016773	ADGRE1 (ENSNVIG00000016424) #17	VAV1 (ENSNVIG00000016115) #18	SH2D3A (ENSNVIG00000016062) #19	TRIP10 (ENSNVIG00000015973) #20	GPR108 (ENSNVIG00000015936) #21	C3 (ENSNVIG00000015877) #22	TNFSF14 (ENSNVIG00000015869) #23	CD70 (ENSNVIG00000015860) #24	TNFSF9 (ENSNVIG00000015851) #25	TUBB4A (ENSNVIG00000015845) #26	DENND1C (ENSNVIG00000015781) #27	CRB3 (ENSNVIG00000015751) #28	SLC25A23 (ENSNVIG00000015735) #29	SLC25A41 (ENSNVIG00000015722)	KHSRP (ENSNVIG00000015567) #30	ENSNVIG00000015514	GTF2F1 (ENSNVIG00000015498) #31	PSPN (ENSNVIG00000015490) #32	ENSNVIG00000015472 #34	ALKBH7 (ENSNVIG00000015449) #33	ENSNVIG00000015434 #34
Ursidae	ANCESTRAL SPECIES	20	ENSGT00940000154595	ENSGT00530000063460.B	ENSGT00390000006876	ENSGT00940000158870.n	ENSGT00940000158404	ENSGT00940000164108.b	ENSGT00940000163012	ENSGT01090000260018.B.a.b	ENSGT00950000183005.b.c.b #16	ENSGT00940000162163	ENSGT00940000161354 #17	ENSGT00940000159125 #18	ENSGT00940000154130.a.a.a #19	ENSGT00950000183047.c.a #20	ENSGT00940000160446 #21	ENSGT00940000154063.C.a.b #22	ENSGT01060000248544.a.a.b.a.a #23	ENSGT00390000006744 #24	ENSGT00390000006244 #25	ENSGT00940000161972 #26	ENSGT00940000161573 #27	ENSGT00950000183101.a.b.a #28	ENSGT00940000159428 #29	ENSGT00940000162419	ENSGT00940000156051 #30	ENSGT00940000163693	ENSGT00440000038032 #31	ENSGT00950000182993.B.b #32	ENSGT00390000014585 #33	ENSGT00390000005830 #34	ENSGT00730000110920.b.a.a #35
Ursus	ANCESTRAL SPECIES	16	ENSGT00940000158995	ENSGT00940000154595	ENSGT00530000063460.B	ENSGT00390000006876	ENSGT00940000158870.n	ENSGT00940000158404	ENSGT00940000163012	ENSGT01090000260018.B.a.b	ENSGT00950000183005.b.c.b #16	ENSGT00940000162163	ENSGT00940000161354 #17	ENSGT00940000159125 #18	ENSGT00940000154130.a.a.a #19	ENSGT00950000183047.c.a #20	ENSGT00940000160446 #21	ENSGT00940000154063.C.a.b #22	ENSGT01060000248544.a.a.b.a.a #23	ENSGT00390000006744 #24	ENSGT00390000006244 #25	ENSGT00940000161972 #26	ENSGT00940000161573 #27	ENSGT00950000183101.a.b.a #28	ENSGT00940000159428 #29	ENSGT00940000162419	ENSGT00940000156051 #30	ENSGT00940000163693	ENSGT00440000038032 #31	ENSGT00950000182993.B.b #32	ENSGT00390000014585 #33	ENSGT00390000005830 #34	ENSGT00730000110920.b.a.a #35
Polar bear	MODERN SPECIES	455	HNRNPM (ENSUMAG00000014575)	PRAM1 (ENSUMAG00000014561)	ZNF414 (ENSUMAG00000014560)	MYO1F (ENSUMAG00000013083)	ADAMTS10 (ENSUMAG00000012829)	ACTL9 (ENSUMAG00000012814)	OR2Z1 (ENSUMAG00000012810)	ENSUMAG00000012806 #16	ENSUMAG00000012794	ENSUMAG00000012778	ADGRE1 (ENSUMAG00000012737) #17	VAV1 (ENSUMAG00000012729) #18	SH2D3A (ENSUMAG00000012716) #19	TRIP10 (ENSUMAG00000012655) #20	GPR108 (ENSUMAG00000012627) #21	C3 (ENSUMAG00000011442) #22	TNFSF14 (ENSUMAG00000011256) #23	CD70 (ENSUMAG00000011245) #24	ENSUMAG00000011240 #25	TUBB4A (ENSUMAG00000011205) #26	DENND1C (ENSUMAG00000011179) #27	SLC25A23 (ENSUMAG00000011176) #29	SLC25A41 (ENSUMAG00000011173)	KHSRP (ENSUMAG00000011144) #30	ENSUMAG00000011130	ENSUMAG00000011125 #31	ALKBH7 (ENSUMAG00000011121) #33	CLPP (ENSUMAG00000011118) #34	ACER1 (ENSUMAG00000011114) #35	MLLT1 (ENSUMAG00000011106) #36	ENSUMAG00000011083
American black bear	MODERN SPECIES	1088											VAV1 (ENSUAMG00000024146) #18	ENSUAMG00000024136 #18	SH2D3A (ENSUAMG00000024134) #19	TRIP10 (ENSUAMG00000024128) #20	GPR108 (ENSUAMG00000024090) #21	C3 (ENSUAMG00000023143) #22	TNFSF14 (ENSUAMG00000023112) #23	CD70 (ENSUAMG00000023109) #24	TUBB4A (ENSUAMG00000023108) #26	ENSUAMG00000023107 #27	ENSUAMG00000023104 #27	CRB3 (ENSUAMG00000023103) #28	SLC25A23 (ENSUAMG00000023102) #29	SLC25A41 (ENSUAMG00000023101)	KHSRP (ENSUAMG00000023100) #30
Giant Panda	DUPLICATION
Giant Panda	MODERN SPECIES	2104																ENSAMEG00000028452 #22
Giant Panda	MODERN SPECIES	14	HNRNPM (ENSAMEG00000004979)	PRAM1 (ENSAMEG00000030135)	ZNF414 (ENSAMEG00000005011)	MYO1F (ENSAMEG00000005023)	ADAMTS10 (ENSAMEG00000005088)	NFILZ (ENSAMEG00000027176)	ACTL9 (ENSAMEG00000018946)	ENSAMEG00000018965	ENSAMEG00000018992 #16	ENSAMEG00000003987	ADGRE1 (ENSAMEG00000003896) #17	VAV1 (ENSAMEG00000007416) #18	SH2D3A (ENSAMEG00000007379) #19	TRIP10 (ENSAMEG00000007327) #20	GPR108 (ENSAMEG00000007302) #21	C3 (ENSAMEG00000007161) #22	TNFSF14 (ENSAMEG00000028779) #23	CD70 (ENSAMEG00000007138) #24	TNFSF9 (ENSAMEG00000024527) #25	TUBB4A (ENSAMEG00000029200) #26	DENND1C (ENSAMEG00000007101) #27	CRB3 (ENSAMEG00000007097) #28	SLC25A23 (ENSAMEG00000007035) #29	SLC25A41 (ENSAMEG00000007032)	KHSRP (ENSAMEG00000006978) #30	ENSAMEG00000006968	GTF2F1 (ENSAMEG00000006933) #31	PSPN (ENSAMEG00000006930) #32	ALKBH7 (ENSAMEG00000006925) #33	CLPP (ENSAMEG00000029863) #34	ACER1 (ENSAMEG00000023660) #35
Atlantogenata	ANCESTRAL SPECIES	124											ENSGT00940000161354 #17	ENSGT00940000159125 #18	ENSGT00940000154130.a.a.a #19	ENSGT00950000183047.c.a #20	ENSGT00940000160446 #21	ENSGT00940000154063.C.a.b #22	ENSGT01060000248544.a.a.b.a.a #23	ENSGT00390000006744 #24	ENSGT00390000006244 #25	ENSGT00940000161573 #27	ENSGT00950000183101.a.b.a #28	ENSGT00940000159428 #29	ENSGT00940000162419	ENSGT00940000156051 #30	ENSGT00940000163693	ENSGT00440000038032 #31	ENSGT00950000182993.B.b #32	ENSGT00390000014585 #33	ENSGT00390000005830 #34	ENSGT00730000110920.b.a.a #35	ENSGT00940000158800 #36
Xenarthra	ANCESTRAL SPECIES	608																ENSGT00940000154063.C.a.b #22	ENSGT01060000248544.a.a.b.a.a #23	ENSGT00390000006744 #24	ENSGT00940000160446 #21	ENSGT00950000183047.c.a #20	ENSGT00940000154130.a.a.a #19	ENSGT00940000159125 #18	ENSGT00940000161354 #17
Armadillo	DUPLICATION
Armadillo	MODERN SPECIES	399					ENSDNOG00000007330 #17	ENSDNOG00000041011	ENSDNOG00000037993	ENSDNOG00000035578 #17	ENSDNOG00000025283 #17	ENSDNOG00000040329	ENSDNOG00000040968 #17	VAV1 (ENSDNOG00000003134) #18	SH2D3A (ENSDNOG00000043221) #19	TRIP10 (ENSDNOG00000003123) #20	GPR108 (ENSDNOG00000049668) #21	ENSDNOG00000014562 #22	CD70 (ENSDNOG00000037063) #24	TNFSF14 (ENSDNOG00000012855) #23	ENSDNOG00000046168 #22
Armadillo	MODERN SPECIES	399																ENSDNOG00000046168 #22	TNFSF14 (ENSDNOG00000012855) #23	CD70 (ENSDNOG00000037063) #24	ENSDNOG00000014562 #22	GPR108 (ENSDNOG00000049668) #21	TRIP10 (ENSDNOG00000003123) #20	SH2D3A (ENSDNOG00000043221) #19	VAV1 (ENSDNOG00000003134) #18	ENSDNOG00000040968 #17	ENSDNOG00000040329	ENSDNOG00000025283 #17	ENSDNOG00000035578 #17	ENSDNOG00000037993	ENSDNOG00000041011	ENSDNOG00000007330 #17
Sloth	MODERN SPECIES	2154																ENSCHOG00000013257 #22
Afrotheria	ANCESTRAL SPECIES	96	ENSGT00940000159130	ENSGT00950000183036.b	ENSGT00940000162948	ENSGT00390000014215	ENSGT00390000000427	ENSGT00940000157375	ENSGT00940000154146.b.b.b	ENSGT00940000155404 #15	ENSGT00950000183069	ENSGT00940000162163	ENSGT00940000161354 #17	ENSGT00940000159125 #18	ENSGT00940000154130.a.a.a #19	ENSGT00950000183047.c.a #20	ENSGT00940000160446 #21	ENSGT00940000154063.C.a.b #22	ENSGT01060000248544.a.a.b.a.a #23
Afrotheria_a	ANCESTRAL SPECIES	98	ENSGT00940000159130	ENSGT00950000183036.b	ENSGT00940000162948	ENSGT00390000014215	ENSGT00390000000427	ENSGT00940000157375	ENSGT00940000154146.b.b.b	ENSGT00940000155404 #15	ENSGT00950000183069	ENSGT00940000162163	ENSGT00940000161354 #17	ENSGT00940000159125 #18	ENSGT00940000154130.a.a.a #19	ENSGT00950000183047.c.a #20	ENSGT00940000160446 #21	ENSGT00940000154063.C.a.b #22	ENSGT01060000248544.a.a.b.a.a #23
Elephant	MODERN SPECIES	46											ENSLAFG00000016979	ADGRE1 (ENSLAFG00000004801) #17	VAV1 (ENSLAFG00000018550) #18	SH2D3A (ENSLAFG00000010477) #19	TRIP10 (ENSLAFG00000010470) #20	C3 (ENSLAFG00000010462) #22	TNFSF14 (ENSLAFG00000021999) #23	ACSBG2 (ENSLAFG00000006705) #37	MLLT1 (ENSLAFG00000026589) #36	ACER1 (ENSLAFG00000012500) #35	CLPP (ENSLAFG00000027937) #34	ALKBH7 (ENSLAFG00000003852) #33	ENSLAFG00000003851 #32	ENSLAFG00000030192 #31	ENSLAFG00000020872	KHSRP (ENSLAFG00000002426) #30	SLC25A41 (ENSLAFG00000028633)	SLC25A23 (ENSLAFG00000013828) #29	CRB3 (ENSLAFG00000013740) #28	TNFSF9 (ENSLAFG00000028534) #25	CD70 (ENSLAFG00000008781) #24
Hyrax	MODERN SPECIES	1932																C3 (ENSPCAG00000014476) #22
Tenrec	MODERN SPECIES	2381																C3 (ENSETEG00000013268) #22
Marsupialia	ANCESTRAL SPECIES	1	ENSGT01030000234559.a.a.b.a	ENSGT00390000003420.a.a	ENSGT00940000160312	ENSGT00950000182886.a.a.b	ENSGT00390000018759	ENSGT00940000163153	ENSGT00940000163037	ENSGT00940000163334	ENSGT00940000162163	ENSGT00940000161354 #17	ENSGT00940000159125 #18	ENSGT00940000154130.a.a.a #19	ENSGT00950000183047.c.a #20	ENSGT00940000160446 #21	ENSGT00940000165414	ENSGT00940000154063.C.a.b #22	ENSGT01060000248544.a.a.b.a.a #23	ENSGT00390000006744 #24	ENSGT00390000006244 #25	ENSGT00940000164486	ENSGT00940000154394.b.a.a.b.b	ENSGT00940000161573 #27	ENSGT00950000183101.a.b.a #28	ENSGT00940000159428 #29	ENSGT00940000162419	ENSGT00940000156051 #30	ENSGT00440000038032 #31	ENSGT00950000182993.B.b #32	ENSGT00940000163693	ENSGT00390000014585 #33	ENSGT00390000005830 #34
Marsupialia_b	ANCESTRAL SPECIES	2	ENSGT01030000234559.a.a.b.a	ENSGT00390000003420.a.a	ENSGT00940000160312	ENSGT00950000182886.a.a.b	ENSGT00390000018759	ENSGT00940000163153	ENSGT00940000163037	ENSGT00940000163334	ENSGT00940000162163	ENSGT00940000161354 #17	ENSGT00940000159125 #18	ENSGT00940000154130.a.a.a #19	ENSGT00950000183047.c.a #20	ENSGT00940000160446 #21	ENSGT00940000165414	ENSGT00940000154063.C.a.b #22	ENSGT01060000248544.a.a.b.a.a #23	ENSGT00390000006744 #24	ENSGT00390000006244 #25	ENSGT00940000164486	ENSGT00940000154394.b.a.a.b.b	ENSGT00940000161573 #27	ENSGT00950000183101.a.b.a #28	ENSGT00940000159428 #29	ENSGT00940000162419	ENSGT00940000156051 #30	ENSGT00940000163693	ENSGT00440000038032 #31	ENSGT00950000182993.B.b #32	ENSGT00390000014585 #33	ENSGT00390000005830 #34
Diprotodontia	ANCESTRAL SPECIES	20	ENSGT00940000154990	ENSGT01030000234559.a.a.b.a	ENSGT00390000003420.a.a	ENSGT00940000160312	ENSGT00950000182886.a.a.b	ENSGT00390000018759	ENSGT00940000163153	ENSGT00940000163037	ENSGT00940000162163	ENSGT00940000161354 #17	ENSGT00940000159125 #18	ENSGT00940000154130.a.a.a #19	ENSGT00950000183047.c.a #20	ENSGT00940000160446 #21	ENSGT00940000165414	ENSGT00940000154063.C.a.b #22	ENSGT01060000248544.a.a.b.a.a #23	ENSGT00390000006744 #24	ENSGT00390000006244 #25	ENSGT00940000164486	ENSGT00940000154394.b.a.a.b.b	ENSGT00940000161573 #27	ENSGT00950000183101.a.b.a #28	ENSGT00940000159428 #29	ENSGT00940000162419	ENSGT00940000156051 #30	ENSGT00940000163693	ENSGT00440000038032 #31	ENSGT00950000182993.B.b #32	ENSGT00390000014585 #33	ENSGT00390000005830 #34
Diprotodontia_a	ANCESTRAL SPECIES	16	ENSGT00940000154990	ENSGT01030000234559.a.a.b.a	ENSGT00390000003420.a.a	ENSGT00940000160312	ENSGT00950000182886.a.a.b.q	ENSGT00390000018759	ENSGT00940000163153	ENSGT00940000163037	ENSGT00940000162163	ENSGT00940000161354 #17	ENSGT00940000159125 #18	ENSGT00940000154130.a.a.a #19	ENSGT00950000183047.c.a #20	ENSGT00940000160446 #21	ENSGT00940000165414	ENSGT00940000154063.C.a.b #22	ENSGT01060000248544.a.a.b.a.a #23	ENSGT00390000006744 #24	ENSGT00390000006244 #25	ENSGT00940000164486	ENSGT00940000154394.b.a.a.b.b	ENSGT00940000161573 #27	ENSGT00950000183101.a.b.a #28	ENSGT00940000159428 #29	ENSGT00940000162419	ENSGT00940000156051 #30	ENSGT00940000163693	ENSGT00440000038032.hb #31	ENSGT00950000182993.B.b #32	ENSGT00390000014585 #33	ENSGT00390000005830 #34
Common wonbat	MODERN SPECIES	580	DDX39A (ENSVURG00010024264)	PKN1 (ENSVURG00010024275)	PTGER1 (ENSVURG00010024284)	GIPC1 (ENSVURG00010024287)	DNAJB1 (ENSVURG00010024288)	ENSVURG00010024291	ENSVURG00010024295	ENSVURG00010024296	ENSVURG00010024299	ENSVURG00010024303 #17	VAV1 (ENSVURG00010024310) #18	SH2D3A (ENSVURG00010024329) #19	TRIP10 (ENSVURG00010024332) #20	GPR108 (ENSVURG00010024334) #21	ENSVURG00010024336	C3 (ENSVURG00010024341) #22	TNFSF14 (ENSVURG00010024348) #23	ENSVURG00010024351 #25	ENSVURG00010024356	ENSVURG00010024360	DENND1C (ENSVURG00010024363) #27	SLC25A23 (ENSVURG00010024368) #29	SLC25A41 (ENSVURG00010024376)	ENSVURG00010024380 #31	ENSVURG00010024383	ENSVURG00010024387 #31	ENSVURG00010024392 #32	ALKBH7 (ENSVURG00010024395) #33	CLPP (ENSVURG00010024400) #34	ACER1 (ENSVURG00010024402) #35	MLLT1 (ENSVURG00010024407) #36
koala	MODERN SPECIES	214										ADGRE1 (ENSPCIG00000028194) #17	VAV1 (ENSPCIG00000016668) #18	SH2D3A (ENSPCIG00000016660) #19	TRIP10 (ENSPCIG00000016659) #20	GPR108 (ENSPCIG00000016658) #21	ENSPCIG00000016656	C3 (ENSPCIG00000016648) #22	TNFSF14 (ENSPCIG00000016643) #23	ENSPCIG00000016641 #24	ENSPCIG00000016640 #25	ENSPCIG00000016632	CRB3 (ENSPCIG00000033282) #28	SLC25A23 (ENSPCIG00000016625) #29	SLC25A41 (ENSPCIG00000016624)	KHSRP (ENSPCIG00000025516) #30	ENSPCIG00000004565 #31	ENSPCIG00000003850	ENSPCIG00000034364 #31	ALKBH7 (ENSPCIG00000016623) #33	CLPP (ENSPCIG00000016621) #34	ACER1 (ENSPCIG00000016619) #35	MLLT1 (ENSPCIG00000032521) #36
Wallaby	MODERN SPECIES	3284																C3 (ENSMEUG00000006258) #22	TNFSF14 (ENSMEUG00000006247) #23
Tasmanian devil	MODERN SPECIES		DNAJB1 (ENSSHAG00000003951)	TECR (ENSSHAG00000001027)	NDUFB7 (ENSSHAG00000025469)	ENSSHAG00000021297	ENSSHAG00000001861	ENSSHAG00000003996	ENSSHAG00000005806	ENSSHAG00000023408	ENSSHAG00000006472	ENSSHAG00000006305 #17	VAV1 (ENSSHAG00000004661) #18	SH2D3A (ENSSHAG00000004505) #19	TRIP10 (ENSSHAG00000004338) #20	GPR108 (ENSSHAG00000003841) #21	ENSSHAG00000003735	C3 (ENSSHAG00000028091) #22	ENSSHAG00000024632 #24	ENSSHAG00000025838 #25	ENSSHAG00000020579	DENND1C (ENSSHAG00000011768) #27	ENSSHAG00000023441 #28	SLC25A23 (ENSSHAG00000011678) #29	SLC25A41 (ENSSHAG00000011643)	KHSRP (ENSSHAG00000011383) #30	ENSSHAG00000022420 #31	ENSSHAG00000030352	ENSSHAG00000010846 #31	ENSSHAG00000029162 #32	ALKBH7 (ENSSHAG00000026703) #33	CLPP (ENSSHAG00000010777) #34	MLLT1 (ENSSHAG00000009440) #36
Opossum	DUPLICATION
Opossum	MODERN SPECIES		ENSMODG00000050912	ENSMODG00000048531	ENSMODG00000051019	ENSMODG00000039280	ENSMODG00000044740	ENSMODG00000023047	ENSMODG00000010002	ENSMODG00000041163	ENSMODG00000040993	ENSMODG00000046168	ENSMODG00000023048	ENSMODG00000044482	ENSMODG00000047216	ENSMODG00000040098	ENSMODG00000038104	ENSMODG00000010731 #22	ENSMODG00000010788	ENSMODG00000039761	ENSMODG00000037575	ENSMODG00000048217	ENSMODG00000039028	ENSMODG00000041743	ENSMODG00000010793	ENSMODG00000011013	ENSMODG00000044461	ENSMODG00000050308	ENSMODG00000043147	ENSMODG00000013040	ENSMODG00000038319	ENSMODG00000037654	ENSMODG00000025774
Opossum	MODERN SPECIES	2	PKN1 (ENSMODG00000002524)	PTGER1 (ENSMODG00000002532)	GIPC1 (ENSMODG00000002551)	DNAJB1 (ENSMODG00000045899)	TECR (ENSMODG00000002590)	NDUFB7 (ENSMODG00000002596)	ENSMODG00000002652	ENSMODG00000025645	ENSMODG00000002364	ADGRE1 (ENSMODG00000002338) #17	VAV1 (ENSMODG00000002314) #18	SH2D3A (ENSMODG00000002291) #19	TRIP10 (ENSMODG00000002259) #20	ENSMODG00000002176 #21	ENSMODG00000002151	C3 (ENSMODG00000002143) #22	TNFSF14 (ENSMODG00000002091) #23	ENSMODG00000024010	ENSMODG00000001954 #24	ENSMODG00000002060 #25	ENSMODG00000002055	ENSMODG00000024011	DENND1C (ENSMODG00000002048) #27	ENSMODG00000002023 #29	SLC25A41 (ENSMODG00000001959)	KHSRP (ENSMODG00000001952) #30	ENSMODG00000051201 #31	ENSMODG00000001941	ENSMODG00000037547 #31	ACER1 (ENSMODG00000001913) #35	MLLT1 (ENSMODG00000001886) #36
Platypus	DUPLICATION
Platypus	MODERN SPECIES	84	ENSOANG00000045252	FEM1A (ENSOANG00000047437)	DPP9 (ENSOANG00000042103)	ENSOANG00000008999	ENSOANG00000013042	CC2D1A (ENSOANG00000041135)	PODNL1 (ENSOANG00000003748)	ENSOANG00000009307	ENSOANG00000030077	ENSOANG00000037657	ENSOANG00000011238 #17	VAV1 (ENSOANG00000014870) #18	GPR108 (ENSOANG00000045248) #21	ENSOANG00000006101	ENSOANG00000006102 #22	ENSOANG00000006107 #22	ENSOANG00000006581 #25	ENSOANG00000039080	ENSOANG00000051104	ENSOANG00000041505	ENSOANG00000044041	ENSOANG00000008407 #27	ENSOANG00000042448 #28	SLC25A23 (ENSOANG00000001661) #29	ENSOANG00000000261 #30	ENSOANG00000000264	ENSOANG00000044176	GTF2F1 (ENSOANG00000006110) #31	ENSOANG00000000620 #32	ALKBH7 (ENSOANG00000045418) #33	CLPP (ENSOANG00000012221) #34
Platypus	MODERN SPECIES	84	ALKBH7 (ENSOANG00000045418) #33	ENSOANG00000000620 #32	GTF2F1 (ENSOANG00000006110) #31	ENSOANG00000044176	ENSOANG00000000264	ENSOANG00000000261 #30	SLC25A23 (ENSOANG00000001661) #29	ENSOANG00000042448 #28	ENSOANG00000008407 #27	ENSOANG00000044041	ENSOANG00000041505	ENSOANG00000051104	ENSOANG00000039080	ENSOANG00000006581 #25	ENSOANG00000006107 #22	ENSOANG00000006102 #22	ENSOANG00000006101	GPR108 (ENSOANG00000045248) #21	VAV1 (ENSOANG00000014870) #18	ENSOANG00000011238 #17	ENSOANG00000037657	ENSOANG00000030077	ENSOANG00000009307	PODNL1 (ENSOANG00000003748)	CC2D1A (ENSOANG00000041135)	ENSOANG00000013042	ENSOANG00000008999	DPP9 (ENSOANG00000042103)	FEM1A (ENSOANG00000047437)	ENSOANG00000045252	PLIN3 (ENSOANG00000047773)
Sauria	ANCESTRAL SPECIES	83									ENSGT01030000234575.c.a.b	ENSGT00940000161354.a #17	ENSGT00940000159125 #18	ENSGT00940000154130.a.a.a #19	ENSGT00950000183047.c.a #20	ENSGT00940000160446 #21	ENSGT00940000165414	ENSGT00940000154063.C.a.b #22	ENSGT01060000248544.a.a.b.a.a #23	ENSGT00940000164486	ENSGT00940000154394.b.a.b	ENSGT00730000111343
Archelosauria	ANCESTRAL SPECIES	28									ENSGT01030000234575.c.a.b	ENSGT00940000161354.a #17	ENSGT00940000159125 #18	ENSGT00940000154130.a.a.a #19	ENSGT00950000183047.c.a #20	ENSGT00940000160446 #21	ENSGT00940000165414	ENSGT00940000154063.C.a.b #22	ENSGT01060000248544.a.a.b.a.a #23	ENSGT00940000164486	ENSGT00940000154394.b.a.b	ENSGT00730000111343	ENSGT00940000154842.a.a	ENSGT00960000189388	ENSGT00950000182888.b	ENSGT00390000016127	ENSGT00940000164889	ENSGT00530000064035.b	ENSGT00510000049510	ENSGT00930000151050	ENSGT00730000114714	ENSGT00680000100126	ENSGT00960000191971
Archosauria	ANCESTRAL SPECIES	176																ENSGT00940000154063.C.a.b #22	ENSGT01060000248544.a.a.b.a.a #23
Aves	ANCESTRAL SPECIES	34	ENSGT01050000244941.B.c	ENSGT00950000183110.a	ENSGT00940000161246	ENSGT00940000159323	ENSGT00550000075110	ENSGT00940000154149.b.b	ENSGT01030000234558.D.b	ENSGT00940000158914	ENSGT00940000153846.a.b	ENSGT01030000234575.c.a.b	ENSGT00940000164508	ENSGT00940000162906.d	ENSGT00940000163334	ENSGT00940000162163	ENSGT00940000159125 #18	ENSGT00940000154063.C.a.b #22	ENSGT01060000248544.a.a.b.a.a #23	ENSGT00940000158035	ENSGT01030000234635.a.a.a.b	ENSGT00940000159130	ENSGT00950000183036.b	ENSGT00940000158718	ENSGT00940000161423	ENSGT00940000159979	ENSGT00530000063777.a.a.a	ENSGT00530000063777.a.a.b	ENSGT00940000154549.b	ENSGT00550000075140	ENSGT00390000016884	ENSGT00940000162025	ENSGT00940000167422
Neognathae	ANCESTRAL SPECIES	34	ENSGT01050000244941.B.c	ENSGT00950000183110.a	ENSGT00940000161246	ENSGT00940000159323	ENSGT00550000075110	ENSGT00940000154149.b.b	ENSGT01030000234558.D.b	ENSGT00940000158914	ENSGT00940000153846.a.b	ENSGT01030000234575.c.a.b.c	ENSGT00940000164508	ENSGT00940000162906.d	ENSGT00940000163334	ENSGT00940000162163	ENSGT00940000159125 #18	ENSGT00940000154063.C.a.b #22	ENSGT01060000248544.a.a.b.a.a #23	ENSGT00940000158035	ENSGT01030000234635.a.a.a.b	ENSGT00940000159130	ENSGT00950000183036.b	ENSGT00940000155021	ENSGT00940000158718	ENSGT00940000161423	ENSGT00940000159979	ENSGT00530000063777.a.a.a	ENSGT00530000063777.a.a.b	ENSGT00940000154549.b	ENSGT00550000075140	ENSGT00390000016884	ENSGT00940000162025
Neognathae_b	ANCESTRAL SPECIES	10	ENSGT01050000244941.B.c	ENSGT00950000183110.a	ENSGT00940000161246	ENSGT00940000159323	ENSGT00550000075110	ENSGT00940000154149.b.b	ENSGT01030000234558.D.b	ENSGT00510000047770.c.a	ENSGT00940000158914	ENSGT00940000153846.a.b	ENSGT01030000234575.c.a.b.c	ENSGT00940000164508	ENSGT00940000162906.d	ENSGT00940000163334	ENSGT00940000159125 #18	ENSGT00940000154063.C.a.b #22	ENSGT01060000248544.a.a.b.a.a #23	ENSGT00940000158035	ENSGT01030000234635.a.a.a.b	ENSGT00940000159130	ENSGT00950000183036.b	ENSGT00940000155021	ENSGT00940000158718	ENSGT00940000161423	ENSGT00940000159979	ENSGT00530000063777.a.a.a	ENSGT00530000063777.a.a.b	ENSGT00940000154549.b	ENSGT00550000075140	ENSGT00390000016884	ENSGT00940000162025
Neognathae_c	ANCESTRAL SPECIES	44										ENSGT00940000158914	ENSGT00940000153846.a.b	ENSGT01030000234575.c.a.b.c	ENSGT00940000164508	ENSGT00940000163334	ENSGT00940000159125 #18	ENSGT00940000154063.C.a.b #22	ENSGT01060000248544.a.a.b.a.a #23	ENSGT00940000158035	ENSGT01030000234635.a.a.a.b	ENSGT00940000159130	ENSGT00950000183036.b	ENSGT00940000155021	ENSGT00940000158718	ENSGT00940000161423	ENSGT00940000159979	ENSGT00530000063777.a.a.a	ENSGT00530000063777.a.a.b	ENSGT00940000154549.b	ENSGT00940000167422	ENSGT00940000160312	ENSGT00390000003420.a.a
Golden eagle	MODERN SPECIES	2	DSN1 (ENSACCG00020005962)	PBX4 (ENSACCG00020005921)	LPAR2 (ENSACCG00020005908)	GMIP (ENSACCG00020005892)	NXNL1 (ENSACCG00020005843)	SLC27A1 (ENSACCG00020005825)	PGLS (ENSACCG00020005808)	NIBAN3 (ENSACCG00020005766)	COLGALT1 (ENSACCG00020005751)	MAP2K7 (ENSACCG00020005715)	EVI5L (ENSACCG00020005636)	ENSACCG00020005563	ENSACCG00020005507	ENSACCG00020005481	VAV1 (ENSACCG00020005288) #18	C3 (ENSACCG00020004493) #22	TNFSF14 (ENSACCG00020003613) #23	ILVBL (ENSACCG00020003587)	SYDE1 (ENSACCG00020003564)	ENSACCG00020003551	ENSACCG00020003543	MCOLN1 (ENSACCG00020003343)	PGLYRP2 (ENSACCG00020003313)	ENSACCG00020003295	WIZ (ENSACCG00020003274)	AKAP8L (ENSACCG00020003203)	AKAP8 (ENSACCG00020003131)	BRD4 (ENSACCG00020003099)	TECR (ENSACCG00020003055)	ENSACCG00020003044	DNAJB1 (ENSACCG00020003032)
Kakapo	MODERN SPECIES	26															ENSSHBG00005007177 #18	C3 (ENSSHBG00005007205) #22	ENSSHBG00005007253
Passeriformes	ANCESTRAL SPECIES	73															ENSGT00940000159125 #18	ENSGT00940000154063.C.a.b #22	ENSGT00940000158035	ENSGT00940000160312	ENSGT00950000182886.a.a.b	ENSGT00390000018759	ENSGT00390000000976	ENSGT00940000162025	ENSGT00390000016884	ENSGT00550000075140
Great tit	MODERN SPECIES	382																C3 (ENSPMJG00000002538) #22
Passeriformes_d	ANCESTRAL SPECIES	70															ENSGT00940000159125 #18	ENSGT00940000154063.C.a.b #22	ENSGT00940000158035	ENSGT00940000160312	ENSGT00950000182886.a.a.b	ENSGT00390000018759	ENSGT00390000000976	ENSGT00940000162025	ENSGT00390000016884	ENSGT00550000075140
Flycatcher	MODERN SPECIES	352																ENSFALG00000011153 #22	ENSFALG00000028252
Passeriformes_g	ANCESTRAL SPECIES	84															ENSGT00940000159125 #18	ENSGT00940000154063.C.a.b #22	ENSGT00940000158035	ENSGT00940000160312	ENSGT00950000182886.a.a.b	ENSGT00390000018759	ENSGT00390000000976	ENSGT00940000162025	ENSGT00390000016884	ENSGT00550000075140
Medium ground finch	MODERN SPECIES	510															ENSGFOG00000007829	C3 (ENSGFOG00000007898) #22
Passeroidea	ANCESTRAL SPECIES	87															ENSGT00940000159125 #18	ENSGT00940000154063.C.a.b #22	ENSGT00940000158035	ENSGT00940000160312	ENSGT00950000182886.a.a.b	ENSGT00390000018759	ENSGT00390000000976	ENSGT00940000162025	ENSGT00390000016884	ENSGT00550000075140
Zebra finch	MODERN SPECIES	24	ENSTGUG00000024486	ENSTGUG00000023743	ENSTGUG00000023198	ENSTGUG00000022220	S1PR2 (ENSTGUG00000019457)	ENSTGUG00000028832	ATP13A1 (ENSTGUG00000029426)	ENSTGUG00000020110	ENSTGUG00000026563	PIN1 (ENSTGUG00000028004)	OLFM2 (ENSTGUG00000020356)	WDR83OS (ENSTGUG00000027701)	WDR83 (ENSTGUG00000024056)	DHPS (ENSTGUG00000025561)	ENSTGUG00000028777 #18	C3 (ENSTGUG00000026277) #22	ENSTGUG00000026606	ENSTGUG00000026029	DNAJB1 (ENSTGUG00000028620)	TECR (ENSTGUG00000029298)	NDUFB7 (ENSTGUG00000019936)	TRAPPC5 (ENSTGUG00000023204)	PCP2 (ENSTGUG00000018878)	ENSTGUG00000020304	XAB2 (ENSTGUG00000029015)	ENSTGUG00000026107	ENSTGUG00000022595	ENSTGUG00000022079	ENSTGUG00000026867	ENSTGUG00000023637	ENSTGUG00000019157
Common canary	MODERN SPECIES	282																C3 (ENSSCAG00000007051) #22
Galloanserae	ANCESTRAL SPECIES	50												ENSGT00940000153846.a.b	ENSGT01030000234575.c.a.b.c	ENSGT00940000162163	ENSGT00940000159125 #18	ENSGT00940000154063.C.a.b #22	ENSGT00940000158035	ENSGT01030000234635.a.a.a.b	ENSGT00940000159130	ENSGT00950000183036.b	ENSGT00940000155021	ENSGT00940000158718	ENSGT00940000161423	ENSGT00940000159979	ENSGT00530000063777.a.a.a	ENSGT00530000063777.a.a.b	ENSGT00390000003420.a.a	ENSGT00940000160312	ENSGT00390000018759	ENSGT00950000183135.A.b	ENSGT00390000013732
Anatidae	ANCESTRAL SPECIES	98												ENSGT00940000153846.a.b	ENSGT01030000234575.c.a.b.c	ENSGT00940000162163	ENSGT00940000159125 #18	ENSGT00940000154063.C.a.b #22	ENSGT00940000158035	ENSGT01030000234635.a.a.a.b	ENSGT01030000234575.c.b	ENSGT01100000263552.g.b.b.b.c	ENSGT00940000159130	ENSGT00950000183036.b	ENSGT00940000155021	ENSGT00940000158718	ENSGT00940000161423	ENSGT00940000159979	ENSGT00530000063777.a.a.a
Duck	MODERN SPECIES	2127															ENSAPLG00000029214 #18	C3 (ENSAPLG00000015159) #22	ILVBL (ENSAPLG00000026632)	SYDE1 (ENSAPLG00000030638)
Pink-footed goose	MODERN SPECIES	436											EVI5L (ENSABRG00000017689)	ENSABRG00000017679	ENSABRG00000017676	ENSABRG00000017667	VAV1 (ENSABRG00000017285) #18	C3 (ENSABRG00000016580) #22	ILVBL (ENSABRG00000016466)	SYDE1 (ENSABRG00000016461)	ENSABRG00000016459	ENSABRG00000016456	PNPLA6 (ENSABRG00000016402)	MCOLN1 (ENSABRG00000016386)	CYP4F8 (ENSABRG00000016371)	PGLYRP2 (ENSABRG00000016369)	RASAL3 (ENSABRG00000016362)	WIZ (ENSABRG00000016351)	AKAP8L (ENSABRG00000016279)
Phasianidae	ANCESTRAL SPECIES	41													ENSGT00940000153846.a.b	ENSGT01030000234575.c.a.b.c	ENSGT00940000159125 #18	ENSGT00940000154063.C.a.b #22	ENSGT00940000158035	ENSGT01030000234635.a.a.a.b	ENSGT00940000159130	ENSGT00950000183036.b	ENSGT00940000155021	ENSGT00940000158718	ENSGT00940000161423	ENSGT00940000156787.v	ENSGT00530000063777.a.a.a	ENSGT00530000063777.a.a.b	ENSGT00390000003420.a.a	ENSGT00940000160312	ENSGT00390000018759	ENSGT00950000183135.A.b	ENSGT00390000013732
Phasianidae_b	ANCESTRAL SPECIES	46										ENSGT00940000161143	ENSGT00940000160550	ENSGT00940000159869	ENSGT00390000013443.c	ENSGT00940000153846.a.b	ENSGT00940000159125 #18	ENSGT00940000154063.C.a.b #22	ENSGT00940000158035	ENSGT01030000234635.a.a.a.b	ENSGT00940000159130	ENSGT00950000183036.b	ENSGT00940000155021	ENSGT00940000158718	ENSGT00940000161423	ENSGT00940000156787.v	ENSGT00530000063777.a.a.a	ENSGT00530000063777.a.a.b	ENSGT00390000003420.a.a	ENSGT00940000160312	ENSGT00390000018759	ENSGT00950000183135.A.b	ENSGT00390000013732
Chicken	MODERN SPECIES	23					FDX2 (ENSGALG00010002425)	RAVER1 (ENSGALG00010002432)	TYK2 (ENSGALG00010002443)	ENSGALG00010002450	CDC37 (ENSGALG00010002472)	TRAPPC5 (ENSGALG00010003680)	ENSGALG00010003724	EVI5L (ENSGALG00010003762)	ENSGALG00010003774	VAV1 (ENSGALG00010003064) #18	ENSGALG00010003158	C3 (ENSGALG00010003164) #22	ILVBL (ENSGALG00010003468)	ENSGALG00010003476	SYDE1 (ENSGALG00010003479)	PNPLA6 (ENSGALG00010003585)	MCOLN1 (ENSGALG00010003627)	CYP4F11 (ENSGALG00010003634)	PGLYRP2 (ENSGALG00010003811)	RASAL3 (ENSGALG00010003815)	RASAL3 (ENSGALG00010003842)	AKAP8L (ENSGALG00010003865)	AKAP8 (ENSGALG00010003875)	GIPC1 (ENSGALG00010003887)	DNAJB1 (ENSGALG00010003909)	TECR (ENSGALG00010003933)	DCAF15 (ENSGALG00010002857)
Turkey	MODERN SPECIES	1253															ENSMGAG00000019767 #18	ENSMGAG00000000634 #22	TRAPPC5 (ENSMGAG00000019844)	ENSMGAG00000022021	MCOLN1 (ENSMGAG00000013583)	CYP4F8 (ENSMGAG00000013567)	PGLYRP2 (ENSMGAG00000003825)	RASAL3 (ENSMGAG00000001875)
Japanese quail	MODERN SPECIES	52															TYMP (ENSCJPG00005002228)	ENSCJPG00005002231 #22
African ostrich	MODERN SPECIES	149											EVI5L (ENSSCUG00000002488)	ENSSCUG00000002501	ENSSCUG00000002503	ENSSCUG00000002504	VAV1 (ENSSCUG00000002522) #18	C3 (ENSSCUG00000002567) #22	MCOLN1 (ENSSCUG00000002606)	ENSSCUG00000002620
Cryptodira	DUPLICATION
Cryptodira	DUPLICATION
Cryptodira	ANCESTRAL SPECIES	39							ENSGT00940000162163.f	ENSGT00940000161354.a #17	ENSGT00940000159125 #18	ENSGT00940000154130.a.a.a.b #19	ENSGT00940000154130.a.a.a.a #19	ENSGT00950000183047.c.a #20	ENSGT00940000160446 #21	ENSGT00940000165414	ENSGT00940000154063.C.a.b.ib #22	ENSGT00940000154063.C.a.b.hb.a #22	ENSGT00940000154063.C.a.b.hb.b #22	ENSGT01060000248544.a.a.b.a.a #23	ENSGT00940000164486	ENSGT00940000154394.b.a.a.b.b	ENSGT00940000161573 #27	ENSGT00950000183101.a.b.a #28	ENSGT00940000159428 #29	ENSGT00940000157552	ENSGT00390000016298.a	ENSGT00390000008201	ENSGT00940000158145	ENSGT00390000007170	ENSGT00940000160315	ENSGT00940000161935	ENSGT00940000153116.C.b
Testudinoidea	ANCESTRAL SPECIES	36								ENSGT01030000234575.c.a.b.a.b	ENSGT00940000161354.a #17	ENSGT00940000159125 #18	ENSGT00940000154130.a.a.a.a #19	ENSGT00950000183047.c.a #20	ENSGT00940000160446 #21	ENSGT00940000165414	ENSGT00940000154063.C.a.b.ib #22	ENSGT00940000154063.C.a.b.hb.a #22	ENSGT00940000154063.C.a.b.hb.b.c #22	ENSGT01060000248544.a.a.b.a.a #23	ENSGT00950000183101.a.b.a #28	ENSGT00940000159428 #29	ENSGT00940000157552	ENSGT00390000016298.a	ENSGT00390000008201	ENSGT00940000158145	ENSGT00390000007170	ENSGT00940000160315	ENSGT00940000161935	ENSGT00940000153116.C.b	ENSGT00510000047770.c.a	ENSGT00940000160389	ENSGT00940000160257
Emydidae	DUPLICATION
Emydidae	DUPLICATION
Emydidae	ANCESTRAL SPECIES																	ENSGT00940000154063.C.a.b.hb.a.a.a #22
painted turtle	DUPLICATION
painted turtle	MODERN SPECIES	931														ENSCPBG00000015622	ENSCPBG00000015613 #22	ENSCPBG00000014190 #22	ENSCPBG00000014084 #22	ENSCPBG00000014003 #22	TNFSF14 (ENSCPBG00000013999) #23	ENSCPBG00000013998	ENSCPBG00000013997	ENSCPBG00000013995	ENSCPBG00000013993	ENSCPBG00000013991	ENSCPBG00000013989	CRB3 (ENSCPBG00000013987) #28	SLC25A23 (ENSCPBG00000013986) #29	ENSCPBG00000013985	TMEM205 (ENSCPBG00000013984)	ENSCPBG00000013980
painted turtle	MODERN SPECIES	931			ENSCPBG00000013980	TMEM205 (ENSCPBG00000013984)	ENSCPBG00000013985	SLC25A23 (ENSCPBG00000013986) #29	CRB3 (ENSCPBG00000013987) #28	ENSCPBG00000013989	ENSCPBG00000013991	ENSCPBG00000013993	ENSCPBG00000013995	ENSCPBG00000013997	ENSCPBG00000013998	TNFSF14 (ENSCPBG00000013999) #23	ENSCPBG00000014003 #22	ENSCPBG00000014084 #22	ENSCPBG00000014190 #22	ENSCPBG00000015613 #22	ENSCPBG00000015622
Emydidae	ANCESTRAL SPECIES																	ENSGT00940000154063.C.a.b.hb.a.a.b #22
painted turtle	MODERN SPECIES	931															ENSCPBG00000015622	ENSCPBG00000015613 #22	ENSCPBG00000014190 #22	ENSCPBG00000014084 #22	ENSCPBG00000014003 #22	TNFSF14 (ENSCPBG00000013999) #23	ENSCPBG00000013998	ENSCPBG00000013997	ENSCPBG00000013995	ENSCPBG00000013993	ENSCPBG00000013991	ENSCPBG00000013989	CRB3 (ENSCPBG00000013987) #28	SLC25A23 (ENSCPBG00000013986) #29	ENSCPBG00000013985	TMEM205 (ENSCPBG00000013984)	ENSCPBG00000013980
Three-toed box turtle	MODERN SPECIES	1666																ENSTMTG00000019817 #22
Emydidae	ANCESTRAL SPECIES	150									ENSGT00940000161354.a #17	ENSGT00940000159125 #18	ENSGT00940000154130.a.a.a.a #19	ENSGT00950000183047.c.a #20	ENSGT00940000160446 #21	ENSGT00940000165414	ENSGT00940000154063.C.a.b.ib #22	ENSGT00940000154063.C.a.b.hb.a.b #22
painted turtle	MODERN SPECIES	8										VAV1 (ENSCPBG00000021293) #18	SH2D3A (ENSCPBG00000021287) #19	TRIP10 (ENSCPBG00000019702) #20	GPR108 (ENSCPBG00000019622) #21	ENSCPBG00000019614	ENSCPBG00000019606 #22	ENSCPBG00000019494 #22
Testudinidae	DUPLICATION
Testudinidae	DUPLICATION
Testudinidae	ANCESTRAL SPECIES	54								ENSGT01030000234575.c.a.b.a.b	ENSGT00940000161354.a #17	ENSGT00940000159125 #18	ENSGT00940000154130.a.a.a.a #19	ENSGT00950000183047.c.a #20	ENSGT00940000160446 #21	ENSGT00940000165414	ENSGT00940000154063.C.a.b.ib #22	ENSGT00940000154063.C.a.b.hb.a.c.a #22	ENSGT00940000154063.C.a.b.hb.a.d #22	ENSGT00940000154063.C.a.b.hb.b.c #22	ENSGT01060000248544.a.a.b.a.a #23	ENSGT00390000016573.c.b	ENSGT00940000164486	ENSGT00940000154394.b.a.b	ENSGT00950000183101.a.b.a #28	ENSGT00940000159428 #29	ENSGT00940000157552	ENSGT00390000016298.a	ENSGT00390000008201	ENSGT00940000158145	ENSGT00390000007170	ENSGT00940000160315	ENSGT00940000161935
Goode s thornscrub tortoise	MODERN SPECIES	171			ENSGEVG00005021002	ENSGEVG00005021005	ENSGEVG00005021007	ADGRE1 (ENSGEVG00005021009) #17	ENSGEVG00005021010	ENSGEVG00005021019 #18	ENSGEVG00005021035 #19	ENSGEVG00005021038 #18	ENSGEVG00005021044 #19	TRIP10 (ENSGEVG00005014081) #20	GPR108 (ENSGEVG00005014480) #21	ENSGEVG00005014531	ENSGEVG00005014571 #22	ENSGEVG00005016105 #22	ENSGEVG00005020808 #22	ENSGEVG00005020875 #22	TNFSF14 (ENSGEVG00005020911) #23	ENSGEVG00005020918	ENSGEVG00005020923	ENSGEVG00005020939	ENSGEVG00005020942	ENSGEVG00005020947
Abingdon island giant tortoise	MODERN SPECIES	75						ENSCABG00000016866	ENSCABG00000016865	ADGRE1 (ENSCABG00000016861) #17	ENSCABG00000016857 #18	ENSCABG00000016856 #18	SH2D3A (ENSCABG00000016854) #19	TRIP10 (ENSCABG00000016785) #20	GPR108 (ENSCABG00000016782) #21	ENSCABG00000016781	ENSCABG00000016689 #22	ENSCABG00000016677 #22	ENSCABG00000016671 #22
Testudinidae	ANCESTRAL SPECIES																	ENSGT00940000154063.C.a.b.hb.a.c.b #22
Abingdon island giant tortoise	MODERN SPECIES	877																ENSCABG00000012249 #22
Testudinidae	ANCESTRAL SPECIES	54							ENSGT01030000234575.c.a.b.a.b	ENSGT00940000161354.a #17	ENSGT00940000159125 #18	ENSGT00940000154130.a.a.a.a #19	ENSGT00950000183047.c.a #20	ENSGT00940000160446 #21	ENSGT00940000165414	ENSGT00940000154063.C.a.b.ib #22	ENSGT00940000154063.C.a.b.hb.a.c.a #22	ENSGT00940000154063.C.a.b.hb.a.d #22	ENSGT00940000154063.C.a.b.hb.b.c #22	ENSGT01060000248544.a.a.b.a.a #23	ENSGT00390000016573.c.b	ENSGT00940000164486	ENSGT00940000154394.b.a.b	ENSGT00950000183101.a.b.a #28	ENSGT00940000159428 #29	ENSGT00940000157552	ENSGT00390000016298.a	ENSGT00390000008201	ENSGT00940000158145	ENSGT00390000007170	ENSGT00940000160315	ENSGT00940000161935	ENSGT00940000153116.C.b
Goode s thornscrub tortoise	MODERN SPECIES	171		ENSGEVG00005021002	ENSGEVG00005021005	ENSGEVG00005021007	ADGRE1 (ENSGEVG00005021009) #17	ENSGEVG00005021010	ENSGEVG00005021019 #18	ENSGEVG00005021035 #19	ENSGEVG00005021038 #18	ENSGEVG00005021044 #19	TRIP10 (ENSGEVG00005014081) #20	GPR108 (ENSGEVG00005014480) #21	ENSGEVG00005014531	ENSGEVG00005014571 #22	ENSGEVG00005016105 #22	ENSGEVG00005020808 #22	ENSGEVG00005020875 #22	TNFSF14 (ENSGEVG00005020911) #23	ENSGEVG00005020918	ENSGEVG00005020923	ENSGEVG00005020939	ENSGEVG00005020942	ENSGEVG00005020947
Abingdon island giant tortoise	MODERN SPECIES	75					ENSCABG00000016866	ENSCABG00000016865	ADGRE1 (ENSCABG00000016861) #17	ENSCABG00000016857 #18	ENSCABG00000016856 #18	SH2D3A (ENSCABG00000016854) #19	TRIP10 (ENSCABG00000016785) #20	GPR108 (ENSCABG00000016782) #21	ENSCABG00000016781	ENSCABG00000016689 #22	ENSCABG00000016677 #22	ENSCABG00000016671 #22
Chinese turtle	MODERN SPECIES	1195								ENSPSIG00000016648 #18	ENSPSIG00000016221 #17	ENSPSIG00000016171 #19	ENSPSIG00000015934 #19	TRIP10 (ENSPSIG00000015902) #20	GPR108 (ENSPSIG00000015300) #21	ENSPSIG00000015292	ENSPSIG00000010478 #22	ENSPSIG00000015357 #22	ENSPSIG00000014972 #22	ENSPSIG00000014645 #22	TNFSF14 (ENSPSIG00000014562) #23	ENSPSIG00000014553	DENND1C (ENSPSIG00000012540) #27	SLC25A23 (ENSPSIG00000011897) #29	RAB3D (ENSPSIG00000011469)	CCDC159 (ENSPSIG00000011232)	ENSPSIG00000010485	ODAD3 (ENSPSIG00000009032)	PRKCSH (ENSPSIG00000006639)	ENSPSIG00000006507	ECSIT (ENSPSIG00000006091)	CNN1 (ENSPSIG00000016089)	ACP5 (ENSPSIG00000015951)
Cryptodira	ANCESTRAL SPECIES	39						ENSGT00940000162163.f	ENSGT00940000161354.a #17	ENSGT00940000159125 #18	ENSGT00940000154130.a.a.a.b #19	ENSGT00940000154130.a.a.a.a #19	ENSGT00950000183047.c.a #20	ENSGT00940000160446 #21	ENSGT00940000165414	ENSGT00940000154063.C.a.b.ib #22	ENSGT00940000154063.C.a.b.hb.a #22	ENSGT00940000154063.C.a.b.hb.b #22	ENSGT01060000248544.a.a.b.a.a #23	ENSGT00940000164486	ENSGT00940000154394.b.a.a.b.b	ENSGT00940000161573 #27	ENSGT00950000183101.a.b.a #28	ENSGT00940000159428 #29	ENSGT00940000157552	ENSGT00390000016298.a	ENSGT00390000008201	ENSGT00940000158145	ENSGT00390000007170	ENSGT00940000160315	ENSGT00940000161935	ENSGT00940000153116.C.b	ENSGT00510000047770.c.a
Chinese turtle	DUPLICATION
Chinese turtle	MODERN SPECIES	1195						ENSPSIG00000016648 #18	ENSPSIG00000016221 #17	ENSPSIG00000016171 #19	ENSPSIG00000015934 #19	TRIP10 (ENSPSIG00000015902) #20	GPR108 (ENSPSIG00000015300) #21	ENSPSIG00000015292	ENSPSIG00000010478 #22	ENSPSIG00000015357 #22	ENSPSIG00000014972 #22	ENSPSIG00000014645 #22	TNFSF14 (ENSPSIG00000014562) #23	ENSPSIG00000014553	DENND1C (ENSPSIG00000012540) #27	SLC25A23 (ENSPSIG00000011897) #29	RAB3D (ENSPSIG00000011469)	CCDC159 (ENSPSIG00000011232)	ENSPSIG00000010485	ODAD3 (ENSPSIG00000009032)	PRKCSH (ENSPSIG00000006639)	ENSPSIG00000006507	ECSIT (ENSPSIG00000006091)	CNN1 (ENSPSIG00000016089)	ACP5 (ENSPSIG00000015951)
Chinese turtle	MODERN SPECIES	1195							ENSPSIG00000016648 #18	ENSPSIG00000016221 #17	ENSPSIG00000016171 #19	ENSPSIG00000015934 #19	TRIP10 (ENSPSIG00000015902) #20	GPR108 (ENSPSIG00000015300) #21	ENSPSIG00000015292	ENSPSIG00000010478 #22	ENSPSIG00000015357 #22	ENSPSIG00000014972 #22	ENSPSIG00000014645 #22	TNFSF14 (ENSPSIG00000014562) #23	ENSPSIG00000014553	DENND1C (ENSPSIG00000012540) #27	SLC25A23 (ENSPSIG00000011897) #29	RAB3D (ENSPSIG00000011469)	CCDC159 (ENSPSIG00000011232)	ENSPSIG00000010485	ODAD3 (ENSPSIG00000009032)	PRKCSH (ENSPSIG00000006639)	ENSPSIG00000006507	ECSIT (ENSPSIG00000006091)	CNN1 (ENSPSIG00000016089)	ACP5 (ENSPSIG00000015951)
Testudinoidea	DUPLICATION
Testudinoidea	ANCESTRAL SPECIES	36							ENSGT01030000234575.c.a.b.a.b	ENSGT00940000161354.a #17	ENSGT00940000159125 #18	ENSGT00940000154130.a.a.a.a #19	ENSGT00950000183047.c.a #20	ENSGT00940000160446 #21	ENSGT00940000165414	ENSGT00940000154063.C.a.b.ib #22	ENSGT00940000154063.C.a.b.hb.a #22	ENSGT00940000154063.C.a.b.hb.b.c #22	ENSGT01060000248544.a.a.b.a.a #23	ENSGT00950000183101.a.b.a #28	ENSGT00940000159428 #29	ENSGT00940000157552	ENSGT00390000016298.a	ENSGT00390000008201	ENSGT00940000158145	ENSGT00390000007170	ENSGT00940000160315	ENSGT00940000161935	ENSGT00940000153116.C.b	ENSGT00510000047770.c.a	ENSGT00940000160389	ENSGT00940000160257	ENSGT00390000005147
Emydidae	ANCESTRAL SPECIES	48																ENSGT00940000154063.C.a.b.hb.b.c #22	ENSGT01060000248544.a.a.b.a.a #23	ENSGT00940000164486	ENSGT00940000154394.a	ENSGT00950000183101.a.b.a #28	ENSGT00940000159428 #29	ENSGT00940000157552	ENSGT00390000016298.a	ENSGT00960000189790	ENSGT00940000153116.C.b	ENSGT00510000047770.c.a	ENSGT00940000160389	ENSGT00940000160257	ENSGT00390000005147	ENSGT01010000222313.A.b.a.c	ENSGT00940000159680
painted turtle	MODERN SPECIES	931												ENSCPBG00000015622	ENSCPBG00000015613 #22	ENSCPBG00000014190 #22	ENSCPBG00000014084 #22	ENSCPBG00000014003 #22	TNFSF14 (ENSCPBG00000013999) #23	ENSCPBG00000013998	ENSCPBG00000013997	ENSCPBG00000013995	ENSCPBG00000013993	ENSCPBG00000013991	ENSCPBG00000013989	CRB3 (ENSCPBG00000013987) #28	SLC25A23 (ENSCPBG00000013986) #29	ENSCPBG00000013985	TMEM205 (ENSCPBG00000013984)	ENSCPBG00000013980
Three-toed box turtle	MODERN SPECIES	382															ENSTMTG00000017487 #22	ENSTMTG00000017545 #22	TNFSF14 (ENSTMTG00000017581) #23	ENSTMTG00000017598	ENSTMTG00000017612	ENSTMTG00000017634	SLC25A23 (ENSTMTG00000017665) #29	RAB3D (ENSTMTG00000017796)	ENSTMTG00000017808	ODAD3 (ENSTMTG00000017813)	PRKCSH (ENSTMTG00000017840)	ELAVL3 (ENSTMTG00000017877)	ENSTMTG00000018051	CNN1 (ENSTMTG00000018057)	ELOF1 (ENSTMTG00000018068)	ACP5 (ENSTMTG00000018088)	NFIX (ENSTMTG00000018091)
Testudinidae	ANCESTRAL SPECIES	54						ENSGT01030000234575.c.a.b.a.b	ENSGT00940000161354.a #17	ENSGT00940000159125 #18	ENSGT00940000154130.a.a.a.a #19	ENSGT00950000183047.c.a #20	ENSGT00940000160446 #21	ENSGT00940000165414	ENSGT00940000154063.C.a.b.ib #22	ENSGT00940000154063.C.a.b.hb.a.c.a #22	ENSGT00940000154063.C.a.b.hb.a.d #22	ENSGT00940000154063.C.a.b.hb.b.c #22	ENSGT01060000248544.a.a.b.a.a #23	ENSGT00390000016573.c.b	ENSGT00940000164486	ENSGT00940000154394.b.a.b	ENSGT00950000183101.a.b.a #28	ENSGT00940000159428 #29	ENSGT00940000157552	ENSGT00390000016298.a	ENSGT00390000008201	ENSGT00940000158145	ENSGT00390000007170	ENSGT00940000160315	ENSGT00940000161935	ENSGT00940000153116.C.b	ENSGT00510000047770.c.a
Abingdon island giant tortoise	MODERN SPECIES	99																ENSCABG00000003937 #22	TNFSF14 (ENSCABG00000003918) #23	ENSCABG00000003912	ENSCABG00000003705	ENSCABG00000003246	ENSCABG00000003241	CRB3 (ENSCABG00000003238) #28	SLC25A23 (ENSCABG00000003235) #29	ENSCABG00000003233	TMEM205 (ENSCABG00000003230)	ENSCABG00000003225	ENSCABG00000003222	EPOR (ENSCABG00000003220)	ENSCABG00000003217	ENSCABG00000003213	PRKCSH (ENSCABG00000003210)
Goode s thornscrub tortoise	MODERN SPECIES	171	ENSGEVG00005021002	ENSGEVG00005021005	ENSGEVG00005021007	ADGRE1 (ENSGEVG00005021009) #17	ENSGEVG00005021010	ENSGEVG00005021019 #18	ENSGEVG00005021035 #19	ENSGEVG00005021038 #18	ENSGEVG00005021044 #19	TRIP10 (ENSGEVG00005014081) #20	GPR108 (ENSGEVG00005014480) #21	ENSGEVG00005014531	ENSGEVG00005014571 #22	ENSGEVG00005016105 #22	ENSGEVG00005020808 #22	ENSGEVG00005020875 #22	TNFSF14 (ENSGEVG00005020911) #23	ENSGEVG00005020918	ENSGEVG00005020923	ENSGEVG00005020939	ENSGEVG00005020942	ENSGEVG00005020947
Testudinoidea	ANCESTRAL SPECIES																	ENSGT00940000154063.C.a.b.hb.b.d #22
Emydidae	ANCESTRAL SPECIES																	ENSGT00940000154063.C.a.b.hb.b.d #22
Three-toed box turtle	MODERN SPECIES	382																ENSTMTG00000017487 #22	ENSTMTG00000017545 #22	TNFSF14 (ENSTMTG00000017581) #23	ENSTMTG00000017598	ENSTMTG00000017612	ENSTMTG00000017634	SLC25A23 (ENSTMTG00000017665) #29	RAB3D (ENSTMTG00000017796)	ENSTMTG00000017808	ODAD3 (ENSTMTG00000017813)	PRKCSH (ENSTMTG00000017840)	ELAVL3 (ENSTMTG00000017877)	ENSTMTG00000018051	CNN1 (ENSTMTG00000018057)	ELOF1 (ENSTMTG00000018068)	ACP5 (ENSTMTG00000018088)
Cryptodira	ANCESTRAL SPECIES	39	ENSGT00940000161935	ENSGT00940000160315	ENSGT00390000007170	ENSGT00940000158145	ENSGT00390000008201	ENSGT00390000016298.a	ENSGT00940000157552	ENSGT00940000159428 #29	ENSGT00950000183101.a.b.a #28	ENSGT00940000161573 #27	ENSGT00940000154394.b.a.a.b.b	ENSGT00940000164486	ENSGT01060000248544.a.a.b.a.a #23	ENSGT00940000154063.C.a.b.hb.b #22	ENSGT00940000154063.C.a.b.hb.a #22	ENSGT00940000154063.C.a.b.ib #22	ENSGT00940000165414	ENSGT00940000160446 #21	ENSGT00950000183047.c.a #20	ENSGT00940000154130.a.a.a.a #19	ENSGT00940000154130.a.a.a.b #19	ENSGT00940000159125 #18	ENSGT00940000161354.a #17	ENSGT00940000162163.f
Testudinoidea	ANCESTRAL SPECIES	36	ENSGT00940000160389	ENSGT00510000047770.c.a	ENSGT00940000153116.C.b	ENSGT00940000161935	ENSGT00940000160315	ENSGT00390000007170	ENSGT00940000158145	ENSGT00390000008201	ENSGT00390000016298.a	ENSGT00940000157552	ENSGT00940000159428 #29	ENSGT00950000183101.a.b.a #28	ENSGT01060000248544.a.a.b.a.a #23	ENSGT00940000154063.C.a.b.hb.b.c #22	ENSGT00940000154063.C.a.b.hb.a #22	ENSGT00940000154063.C.a.b.ib #22	ENSGT00940000165414	ENSGT00940000160446 #21	ENSGT00950000183047.c.a #20	ENSGT00940000154130.a.a.a.a #19	ENSGT00940000159125 #18	ENSGT00940000161354.a #17	ENSGT01030000234575.c.a.b.a.b
Emydidae	ANCESTRAL SPECIES	150															ENSGT00940000154063.C.a.b.hb.a.b #22	ENSGT00940000154063.C.a.b.ib #22	ENSGT00940000165414	ENSGT00940000160446 #21	ENSGT00950000183047.c.a #20	ENSGT00940000154130.a.a.a.a #19	ENSGT00940000159125 #18	ENSGT00940000161354.a #17
Three-toed box turtle	MODERN SPECIES	184																ENSTMTG00000020279 #22	ENSTMTG00000012101	GPR108 (ENSTMTG00000012112) #21	TRIP10 (ENSTMTG00000012155) #20	SH2D3A (ENSTMTG00000012569) #19	VAV1 (ENSTMTG00000013020) #18	ENSTMTG00000013811 #17	ENSTMTG00000013830	ENSTMTG00000013847	ENSTMTG00000013855	ENSTMTG00000013891
painted turtle	MODERN SPECIES	8															ENSCPBG00000019494 #22	ENSCPBG00000019606 #22	ENSCPBG00000019614	GPR108 (ENSCPBG00000019622) #21	TRIP10 (ENSCPBG00000019702) #20	SH2D3A (ENSCPBG00000021287) #19	VAV1 (ENSCPBG00000021293) #18
Testudinidae	ANCESTRAL SPECIES	54	ENSGT00940000160315	ENSGT00390000007170	ENSGT00940000158145	ENSGT00390000008201	ENSGT00390000016298.a	ENSGT00940000157552	ENSGT00940000159428 #29	ENSGT00950000183101.a.b.a #28	ENSGT00940000154394.b.a.b	ENSGT00940000164486	ENSGT00390000016573.c.b	ENSGT01060000248544.a.a.b.a.a #23	ENSGT00940000154063.C.a.b.hb.b.c #22	ENSGT00940000154063.C.a.b.hb.a.d #22	ENSGT00940000154063.C.a.b.hb.a.c.a #22	ENSGT00940000154063.C.a.b.ib #22	ENSGT00940000165414	ENSGT00940000160446 #21	ENSGT00950000183047.c.a #20	ENSGT00940000154130.a.a.a.a #19	ENSGT00940000159125 #18	ENSGT00940000161354.a #17	ENSGT01030000234575.c.a.b.a.b
Goode s thornscrub tortoise	MODERN SPECIES	171							ENSGEVG00005020947	ENSGEVG00005020942	ENSGEVG00005020939	ENSGEVG00005020923	ENSGEVG00005020918	TNFSF14 (ENSGEVG00005020911) #23	ENSGEVG00005020875 #22	ENSGEVG00005020808 #22	ENSGEVG00005016105 #22	ENSGEVG00005014571 #22	ENSGEVG00005014531	GPR108 (ENSGEVG00005014480) #21	TRIP10 (ENSGEVG00005014081) #20	ENSGEVG00005021044 #19	ENSGEVG00005021038 #18	ENSGEVG00005021035 #19	ENSGEVG00005021019 #18	ENSGEVG00005021010	ADGRE1 (ENSGEVG00005021009) #17	ENSGEVG00005021007	ENSGEVG00005021005	ENSGEVG00005021002
Abingdon island giant tortoise	MODERN SPECIES	75														ENSCABG00000016671 #22	ENSCABG00000016677 #22	ENSCABG00000016689 #22	ENSCABG00000016781	GPR108 (ENSCABG00000016782) #21	TRIP10 (ENSCABG00000016785) #20	SH2D3A (ENSCABG00000016854) #19	ENSCABG00000016856 #18	ENSCABG00000016857 #18	ADGRE1 (ENSCABG00000016861) #17	ENSCABG00000016865	ENSCABG00000016866
Chinese turtle	DUPLICATION
Chinese turtle	MODERN SPECIES	420															ENSPSIG00000005593 #17	ENSPSIG00000017290 #22
Chinese turtle	MODERN SPECIES	1195	CNN1 (ENSPSIG00000016089)	ECSIT (ENSPSIG00000006091)	ENSPSIG00000006507	PRKCSH (ENSPSIG00000006639)	ODAD3 (ENSPSIG00000009032)	ENSPSIG00000010485	CCDC159 (ENSPSIG00000011232)	RAB3D (ENSPSIG00000011469)	SLC25A23 (ENSPSIG00000011897) #29	DENND1C (ENSPSIG00000012540) #27	ENSPSIG00000014553	TNFSF14 (ENSPSIG00000014562) #23	ENSPSIG00000014645 #22	ENSPSIG00000014972 #22	ENSPSIG00000015357 #22	ENSPSIG00000010478 #22	ENSPSIG00000015292	GPR108 (ENSPSIG00000015300) #21	TRIP10 (ENSPSIG00000015902) #20	ENSPSIG00000015934 #19	ENSPSIG00000016171 #19	ENSPSIG00000016221 #17	ENSPSIG00000016648 #18
Lepidosauria	ANCESTRAL SPECIES	81										ENSGT01030000234575.c.a.b	ENSGT00940000161354.a #17	ENSGT00940000159125 #18	ENSGT00940000154130.a.a.a #19	ENSGT00950000183047.c.a #20	ENSGT00940000165414	ENSGT00940000154063.C.a.b #22	ENSGT01060000248544.a.a.b.a.a #23	ENSGT00940000164486	ENSGT00940000154394.b.a.a.a.b	ENSGT00950000183101.a.b.a #28	ENSGT00940000159428 #29	ENSGT00940000156051 #30	ENSGT00940000163693	ENSGT00440000038032 #31	ENSGT00950000182993.B.b #32	ENSGT00390000014585 #33	ENSGT00390000005830 #34	ENSGT00940000154739.A	ENSGT00940000154396.b.a	ENSGT01050000244879.a.b	ENSGT00390000011987
tuatara	DUPLICATION
tuatara	MODERN SPECIES	442								ENSSPUG00000008801	ENSSPUG00000008787	ADGRE1 (ENSSPUG00000008764) #17	VAV1 (ENSSPUG00000008504) #18	ENSSPUG00000008458 #20	ENSSPUG00000008453 #20	ENSSPUG00000008431	ENSSPUG00000007654 #22	ENSSPUG00000007462 #22	TNFSF14 (ENSSPUG00000007440) #23
tuatara	MODERN SPECIES	442														TNFSF14 (ENSSPUG00000007440) #23	ENSSPUG00000007462 #22	ENSSPUG00000007654 #22	ENSSPUG00000008431	ENSSPUG00000008453 #20	ENSSPUG00000008458 #20	VAV1 (ENSSPUG00000008504) #18	ADGRE1 (ENSSPUG00000008764) #17	ENSSPUG00000008787	ENSSPUG00000008801
Episquamata	ANCESTRAL SPECIES	6	ENSGT00860000135639	ENSGT00390000013719	ENSGT00950000182917.a.b.b	ENSGT00390000012078.a.b	ENSGT00950000182915.b.b.a.a	ENSGT00390000006387	ENSGT00390000004872	ENSGT00940000158116	ENSGT00940000161856	ENSGT00390000002634.a	ENSGT00940000156887	ENSGT00940000159125 #18	ENSGT00940000154130.a.a.a #19	ENSGT00950000183047.c.a #20	ENSGT00940000165414	ENSGT00940000154063.C.a.b #22	ENSGT01060000248544.a.a.b.a.a #23	ENSGT00940000164486	ENSGT00940000154394.b.a.a.a.a.b	ENSGT00950000183101.a.b.a #28	ENSGT00940000159428 #29	ENSGT00940000156051 #30	ENSGT00940000163693	ENSGT00440000038032 #31	ENSGT00950000182993.B.b #32	ENSGT00390000014585 #33	ENSGT00390000005830 #34	ENSGT00940000154739.A	ENSGT00940000154396.b.a	ENSGT01050000244879.a.b	ENSGT00390000011987
Laterata	ANCESTRAL SPECIES	7	ENSGT00860000135639	ENSGT00390000013719	ENSGT00950000182917.a.b.b	ENSGT00390000012078.a.b	ENSGT00950000182915.b.b.a.a	ENSGT00390000006387	ENSGT00390000004872	ENSGT00940000158116	ENSGT00940000161856	ENSGT00390000002634.a	ENSGT00940000156887	ENSGT00940000159125 #18	ENSGT00940000154130.a.a.a #19	ENSGT00950000183047.c.a #20	ENSGT00940000165414	ENSGT00940000154063.C.a.b #22	ENSGT01060000248544.a.a.b.a.a #23	ENSGT00940000164486	ENSGT00940000154394.b.a.a.a.a.b	ENSGT00950000183101.a.b.a #28	ENSGT00940000159428 #29	ENSGT00940000156051 #30	ENSGT00940000163693	ENSGT00440000038032 #31	ENSGT00950000182993.B.b #32	ENSGT00390000014585 #33	ENSGT00390000005830 #34	ENSGT00940000154739.A	ENSGT00940000154396.b.a	ENSGT01050000244879.a.b	ENSGT00390000011987
Common wall lizard	DUPLICATION
Common wall lizard	MODERN SPECIES	8	GADD45GIP1 (ENSPMRG00000023684)	ENSPMRG00000023687	RAD23A (ENSPMRG00000023693)	CALR (ENSPMRG00000023698)	FARSA (ENSPMRG00000023703)	SYCE2 (ENSPMRG00000023704)	GCDH (ENSPMRG00000023707)	KLF1 (ENSPMRG00000023711)	DNASE2 (ENSPMRG00000023712)	SMARCA4 (ENSPMRG00000023717)	VAV1 (ENSPMRG00000023724) #18	SH2D3A (ENSPMRG00000023731) #19	TRIP10 (ENSPMRG00000023734) #20	ENSPMRG00000023739	ENSPMRG00000023764 #22	ENSPMRG00000023800 #22	TNFSF14 (ENSPMRG00000023859) #23	ENSPMRG00000023860	ENSPMRG00000023861	ENSPMRG00000023863	ENSPMRG00000023864	ENSPMRG00000023865	ENSPMRG00000023866	SLC25A23 (ENSPMRG00000023867) #29	ENSPMRG00000023868	ENSPMRG00000023869 #30	ENSPMRG00000023870	ENSPMRG00000023871 #30	ENSPMRG00000023872	GTF2F1 (ENSPMRG00000023873) #31	PSPN (ENSPMRG00000023874) #32
Common wall lizard	MODERN SPECIES	8	ENSPMRG00000023682	GADD45GIP1 (ENSPMRG00000023684)	ENSPMRG00000023687	RAD23A (ENSPMRG00000023693)	CALR (ENSPMRG00000023698)	FARSA (ENSPMRG00000023703)	SYCE2 (ENSPMRG00000023704)	GCDH (ENSPMRG00000023707)	KLF1 (ENSPMRG00000023711)	DNASE2 (ENSPMRG00000023712)	SMARCA4 (ENSPMRG00000023717)	VAV1 (ENSPMRG00000023724) #18	SH2D3A (ENSPMRG00000023731) #19	TRIP10 (ENSPMRG00000023734) #20	ENSPMRG00000023739	ENSPMRG00000023764 #22	ENSPMRG00000023800 #22	TNFSF14 (ENSPMRG00000023859) #23	ENSPMRG00000023860	ENSPMRG00000023861	ENSPMRG00000023863	ENSPMRG00000023864	ENSPMRG00000023865	ENSPMRG00000023866	SLC25A23 (ENSPMRG00000023867) #29	ENSPMRG00000023868	ENSPMRG00000023869 #30	ENSPMRG00000023870	ENSPMRG00000023871 #30	ENSPMRG00000023872	GTF2F1 (ENSPMRG00000023873) #31
Argentine black and white tegu	MODERN SPECIES	270																ENSSMRG00000013776 #22
Toxicofera	ANCESTRAL SPECIES	6	ENSGT00950000182916.a.b.a.a.a.b.b	ENSGT00390000013719	ENSGT00950000182917.a.b.b	ENSGT00390000012078.a.b	ENSGT00950000182915.b.b.a.a	ENSGT00390000006387	ENSGT00390000004872	ENSGT00940000158116	ENSGT00940000161856	ENSGT00390000002634.a	ENSGT00940000156887	ENSGT00940000159125 #18	ENSGT00940000154130.a.a.a #19	ENSGT00950000183047.c.a #20	ENSGT00940000165414	ENSGT00940000154063.C.a.b #22	ENSGT01060000248544.a.a.b.a.a #23	ENSGT00940000164486	ENSGT00940000154394.b.a.a.a.a.b	ENSGT00940000173726	ENSGT00940000156051 #30	ENSGT00950000183101.a.b.a #28	ENSGT00940000159428 #29	ENSGT00940000163693	ENSGT00440000038032 #31	ENSGT00950000182993.B.b #32	ENSGT00390000014585 #33	ENSGT00390000005830 #34	ENSGT00940000154739.A	ENSGT00940000154396.b.a	ENSGT01050000244879.a.b
Lizard	DUPLICATION
Lizard	DUPLICATION
Lizard	DUPLICATION
Lizard	DUPLICATION
Lizard	DUPLICATION
Lizard	MODERN SPECIES	1	ENSACAG00000015627	ENSACAG00000035115	ENSACAG00000044213	ENSACAG00000043208	ENSACAG00000015657	RLN3 (ENSACAG00000034808)	RFX1 (ENSACAG00000015671)	DCAF15 (ENSACAG00000015723)	ENSACAG00000041903	PODNL1 (ENSACAG00000015752)	CC2D1A (ENSACAG00000015805)	ENSACAG00000038237	ENSACAG00000017334 #22	ENSACAG00000028697 #22	ENSACAG00000014786 #22	ENSACAG00000039335 #22	ENSACAG00000040519 #22	FARSA (ENSACAG00000017166)	ENSACAG00000017141	ENSACAG00000041002	ENSACAG00000017106	ENSACAG00000017092	GADD45GIP1 (ENSACAG00000017088)	ENSACAG00000041770	NFIX (ENSACAG00000017054)	ENSACAG00000044312	ACP5 (ENSACAG00000017040)	ELOF1 (ENSACAG00000036566)	CNN1 (ENSACAG00000017001)	ENSACAG00000035421	ECSIT (ENSACAG00000016981)
Lizard	MODERN SPECIES	1	CLPP (ENSACAG00000015591) #34	ENSACAG00000015627	ENSACAG00000035115	ENSACAG00000044213	ENSACAG00000043208	ENSACAG00000015657	RLN3 (ENSACAG00000034808)	RFX1 (ENSACAG00000015671)	DCAF15 (ENSACAG00000015723)	ENSACAG00000041903	PODNL1 (ENSACAG00000015752)	CC2D1A (ENSACAG00000015805)	ENSACAG00000038237	ENSACAG00000017334 #22	ENSACAG00000028697 #22	ENSACAG00000014786 #22	ENSACAG00000039335 #22	ENSACAG00000040519 #22	FARSA (ENSACAG00000017166)	ENSACAG00000017141	ENSACAG00000041002	ENSACAG00000017106	ENSACAG00000017092	GADD45GIP1 (ENSACAG00000017088)	ENSACAG00000041770	NFIX (ENSACAG00000017054)	ENSACAG00000044312	ACP5 (ENSACAG00000017040)	ELOF1 (ENSACAG00000036566)	CNN1 (ENSACAG00000017001)	ENSACAG00000035421
Lizard	MODERN SPECIES	1	ENSACAG00000015559	CLPP (ENSACAG00000015591) #34	ENSACAG00000015627	ENSACAG00000035115	ENSACAG00000044213	ENSACAG00000043208	ENSACAG00000015657	RLN3 (ENSACAG00000034808)	RFX1 (ENSACAG00000015671)	DCAF15 (ENSACAG00000015723)	ENSACAG00000041903	PODNL1 (ENSACAG00000015752)	CC2D1A (ENSACAG00000015805)	ENSACAG00000038237	ENSACAG00000017334 #22	ENSACAG00000028697 #22	ENSACAG00000014786 #22	ENSACAG00000039335 #22	ENSACAG00000040519 #22	FARSA (ENSACAG00000017166)	ENSACAG00000017141	ENSACAG00000041002	ENSACAG00000017106	ENSACAG00000017092	GADD45GIP1 (ENSACAG00000017088)	ENSACAG00000041770	NFIX (ENSACAG00000017054)	ENSACAG00000044312	ACP5 (ENSACAG00000017040)	ELOF1 (ENSACAG00000036566)	CNN1 (ENSACAG00000017001)
Lizard	MODERN SPECIES	1	ENSACAG00000039789	ENSACAG00000034938	ENSACAG00000036435	ENSACAG00000037540	enam (ENSACAG00000023309)	ambn (ENSACAG00000036385)	ENSACAG00000044724	amtn (ENSACAG00000030518)	fdc-sp (ENSACAG00000024676)	ENSACAG00000013870	ENSACAG00000014078	ENSACAG00000043403	ENSACAG00000028397	ENSACAG00000014253	ENSACAG00000014282	ENSACAG00000017192 #22	TNFSF14 (ENSACAG00000041289) #23	ENSACAG00000029566	ENSACAG00000036871	ENSACAG00000015247	SLC25A23 (ENSACAG00000015342) #29	KHSRP (ENSACAG00000015398) #30	ENSACAG00000015548 #33	GTF2F1 (ENSACAG00000015503) #31	ENSACAG00000040096	PSPN (ENSACAG00000015501) #32	ENSACAG00000015559	CLPP (ENSACAG00000015591) #34	ENSACAG00000015627	ENSACAG00000035115	ENSACAG00000044213
Lizard	MODERN SPECIES	1	PSPN (ENSACAG00000015501) #32	ENSACAG00000015559	CLPP (ENSACAG00000015591) #34	ENSACAG00000015627	ENSACAG00000035115	ENSACAG00000044213	ENSACAG00000043208	ENSACAG00000015657	RLN3 (ENSACAG00000034808)	RFX1 (ENSACAG00000015671)	DCAF15 (ENSACAG00000015723)	ENSACAG00000041903	PODNL1 (ENSACAG00000015752)	CC2D1A (ENSACAG00000015805)	ENSACAG00000038237	ENSACAG00000017334 #22	ENSACAG00000028697 #22	ENSACAG00000014786 #22	ENSACAG00000039335 #22	ENSACAG00000040519 #22	FARSA (ENSACAG00000017166)	ENSACAG00000017141	ENSACAG00000041002	ENSACAG00000017106	ENSACAG00000017092	GADD45GIP1 (ENSACAG00000017088)	ENSACAG00000041770	NFIX (ENSACAG00000017054)	ENSACAG00000044312	ACP5 (ENSACAG00000017040)	ELOF1 (ENSACAG00000036566)
Lizard	MODERN SPECIES	1	ENSACAG00000035115	ENSACAG00000044213	ENSACAG00000043208	ENSACAG00000015657	RLN3 (ENSACAG00000034808)	RFX1 (ENSACAG00000015671)	DCAF15 (ENSACAG00000015723)	ENSACAG00000041903	PODNL1 (ENSACAG00000015752)	CC2D1A (ENSACAG00000015805)	ENSACAG00000038237	ENSACAG00000017334 #22	ENSACAG00000028697 #22	ENSACAG00000014786 #22	ENSACAG00000039335 #22	ENSACAG00000040519 #22	FARSA (ENSACAG00000017166)	ENSACAG00000017141	ENSACAG00000041002	ENSACAG00000017106	ENSACAG00000017092	GADD45GIP1 (ENSACAG00000017088)	ENSACAG00000041770	NFIX (ENSACAG00000017054)	ENSACAG00000044312	ACP5 (ENSACAG00000017040)	ELOF1 (ENSACAG00000036566)	CNN1 (ENSACAG00000017001)	ENSACAG00000035421	ECSIT (ENSACAG00000016981)	ZNF653 (ENSACAG00000016965)
Elapidae	DUPLICATION
Elapidae	ANCESTRAL SPECIES	21	ENSGT00950000182916.a.b.a.a.a.b.b	ENSGT00390000013719	ENSGT00950000182917.a.b.b	ENSGT00390000012078.a.b	ENSGT00950000182915.b.b.a.a	ENSGT00390000006387	ENSGT00390000004872	ENSGT00940000158116	ENSGT00940000161856	ENSGT00390000002634.a	ENSGT00940000156887	ENSGT00940000159125.d #18	ENSGT00940000154130.a.a.a #19	ENSGT00950000183047.c.a #20	ENSGT00940000165414	ENSGT00940000154063.C.a.b.pb #22	ENSGT00940000154063.C.a.b.qb.a #22	ENSGT01060000248544.a.a.b.a.a #23	ENSGT00940000164486	ENSGT00940000154394.b.a.b	ENSGT00950000183101.a.b.a.k #28	ENSGT00940000159428 #29	ENSGT00940000156051 #30	ENSGT00940000163693	ENSGT00440000038032 #31	ENSGT00950000182993.B.b #32	ENSGT00390000014585 #33	ENSGT00390000005830 #34	ENSGT00940000154739.A	ENSGT00940000154396.b.a	ENSGT01050000244879.a.b
Elapidae_a	DUPLICATION
Elapidae_a	ANCESTRAL SPECIES																	ENSGT00940000154063.C.a.b.pb.a #22
Acanthophiinae	ANCESTRAL SPECIES																	ENSGT00940000154063.C.a.b.pb.a #22
Eastern brown snake	MODERN SPECIES	390																C3 (ENSPTXG00000016455) #22
Mainland tiger snake	MODERN SPECIES	1074																ENSNSUG00000005884 #22
Blue-lipped sea krait	MODERN SPECIES	10847																ENSLLTG00000012284 #22
Elapidae_a	ANCESTRAL SPECIES																	ENSGT00940000154063.C.a.b.pb.b #22
Blue-lipped sea krait	MODERN SPECIES	7229																ENSLLTG00000014262 #22
Indian cobra	MODERN SPECIES	1	NFIX (ENSNNAG00000012484)	GADD45GIP1 (ENSNNAG00000012462)	ENSNNAG00000012176	ENSNNAG00000012105	ENSNNAG00000012059	ENSNNAG00000012039	FARSA (ENSNNAG00000012012)	GCDH (ENSNNAG00000011936)	KLF1 (ENSNNAG00000011895)	DNASE2 (ENSNNAG00000011869)	SMARCA4 (ENSNNAG00000011180)	VAV1 (ENSNNAG00000009811) #18	SH2D3A (ENSNNAG00000009558) #19	TRIP10 (ENSNNAG00000009000) #20	ENSNNAG00000008895	ENSNNAG00000008828 #22	ENSNNAG00000008657 #22	ENSNNAG00000008178 #22	ENSNNAG00000008112 #23	ENSNNAG00000007830	ENSNNAG00000007760	ENSNNAG00000007666	CRB3 (ENSNNAG00000007632) #28	ENSNNAG00000007536	KHSRP (ENSNNAG00000007484) #30	ENSNNAG00000007441	GTF2F1 (ENSNNAG00000007411) #31	PSPN (ENSNNAG00000007400) #32	ALKBH7 (ENSNNAG00000007389) #33	CLPP (ENSNNAG00000007375) #34	ENSNNAG00000007120
Elapidae	DUPLICATION
Elapidae	ANCESTRAL SPECIES	21	ENSGT00390000013719	ENSGT00950000182917.a.b.b	ENSGT00390000012078.a.b	ENSGT00950000182915.b.b.a.a	ENSGT00390000006387	ENSGT00390000004872	ENSGT00940000158116	ENSGT00940000161856	ENSGT00390000002634.a	ENSGT00940000156887	ENSGT00940000159125.d #18	ENSGT00940000154130.a.a.a #19	ENSGT00950000183047.c.a #20	ENSGT00940000165414	ENSGT00940000154063.C.a.b.pb #22	ENSGT00940000154063.C.a.b.qb.a #22	ENSGT01060000248544.a.a.b.a.a #23	ENSGT00940000164486	ENSGT00940000154394.b.a.b	ENSGT00950000183101.a.b.a.k #28	ENSGT00940000159428 #29	ENSGT00940000156051 #30	ENSGT00940000163693	ENSGT00440000038032 #31	ENSGT00950000182993.B.b #32	ENSGT00390000014585 #33	ENSGT00390000005830 #34	ENSGT00940000154739.A	ENSGT00940000154396.b.a	ENSGT01050000244879.a.b	ENSGT00390000011987
Indian cobra	DUPLICATION
Indian cobra	MODERN SPECIES	269																ENSNNAG00000013375 #22
Indian cobra	MODERN SPECIES	1	ENSNNAG00000012176	ENSNNAG00000012105	ENSNNAG00000012059	ENSNNAG00000012039	FARSA (ENSNNAG00000012012)	GCDH (ENSNNAG00000011936)	KLF1 (ENSNNAG00000011895)	DNASE2 (ENSNNAG00000011869)	SMARCA4 (ENSNNAG00000011180)	VAV1 (ENSNNAG00000009811) #18	SH2D3A (ENSNNAG00000009558) #19	TRIP10 (ENSNNAG00000009000) #20	ENSNNAG00000008895	ENSNNAG00000008828 #22	ENSNNAG00000008657 #22	ENSNNAG00000008178 #22	ENSNNAG00000008112 #23	ENSNNAG00000007830	ENSNNAG00000007760	ENSNNAG00000007666	CRB3 (ENSNNAG00000007632) #28	ENSNNAG00000007536	KHSRP (ENSNNAG00000007484) #30	ENSNNAG00000007441	GTF2F1 (ENSNNAG00000007411) #31	PSPN (ENSNNAG00000007400) #32	ALKBH7 (ENSNNAG00000007389) #33	CLPP (ENSNNAG00000007375) #34	ENSNNAG00000007120	ENSNNAG00000019030	RLN3 (ENSNNAG00000019028)
Elapidae_a	ANCESTRAL SPECIES	23																ENSGT00940000154063.C.a.b.qb.a #22	ENSGT01060000248544.a.a.b.a.a #23	ENSGT00940000164486	ENSGT00940000154394.b.a.a.a.b	ENSGT00950000183101.a.b.a.k #28	ENSGT00940000159428 #29	ENSGT00940000156051 #30	ENSGT00940000163693	ENSGT00440000038032 #31	ENSGT00950000182993.B.b #32	ENSGT00390000014585 #33	ENSGT00390000005830 #34	ENSGT00940000154739.A	ENSGT00940000154396.b.a	ENSGT01050000244879.a.b	ENSGT00390000011987
Acanthophiinae	ANCESTRAL SPECIES	23																ENSGT00940000154063.C.a.b.qb.a #22	ENSGT01060000248544.a.a.b.a.a #23	ENSGT00940000164486	ENSGT00940000154394.b.a.a.a.b	ENSGT00950000183101.a.b.a.k #28	ENSGT00940000159428 #29	ENSGT00940000156051 #30	ENSGT00940000163693	ENSGT00440000038032 #31	ENSGT00950000182993.B.b #32	ENSGT00390000014585 #33	ENSGT00390000005830 #34	ENSGT00940000154739.A	ENSGT00940000154396.b.a	ENSGT01050000244879.a.b	ENSGT00390000011987
Mainland tiger snake	MODERN SPECIES	167																ENSNSUG00000013339 #22	TNFSF14 (ENSNSUG00000013338) #23	ENSNSUG00000013337	ENSNSUG00000013335	ENSNSUG00000013334	CRB3 (ENSNSUG00000013333) #28	SLC25A23 (ENSNSUG00000013332) #29	KHSRP (ENSNSUG00000013328) #30	ENSNSUG00000013327	GTF2F1 (ENSNSUG00000013325) #31	PSPN (ENSNSUG00000013324) #32	ALKBH7 (ENSNSUG00000013323) #33	CLPP (ENSNSUG00000013322) #34	ENSNSUG00000013321	ENSNSUG00000013319	RLN3 (ENSNSUG00000013313)
Elapidae	ANCESTRAL SPECIES																	ENSGT00940000154063.C.a.b.qb.b #22
Indian cobra	MODERN SPECIES	1	GADD45GIP1 (ENSNNAG00000012462)	ENSNNAG00000012176	ENSNNAG00000012105	ENSNNAG00000012059	ENSNNAG00000012039	FARSA (ENSNNAG00000012012)	GCDH (ENSNNAG00000011936)	KLF1 (ENSNNAG00000011895)	DNASE2 (ENSNNAG00000011869)	SMARCA4 (ENSNNAG00000011180)	VAV1 (ENSNNAG00000009811) #18	SH2D3A (ENSNNAG00000009558) #19	TRIP10 (ENSNNAG00000009000) #20	ENSNNAG00000008895	ENSNNAG00000008828 #22	ENSNNAG00000008657 #22	ENSNNAG00000008178 #22	ENSNNAG00000008112 #23	ENSNNAG00000007830	ENSNNAG00000007760	ENSNNAG00000007666	CRB3 (ENSNNAG00000007632) #28	ENSNNAG00000007536	KHSRP (ENSNNAG00000007484) #30	ENSNNAG00000007441	GTF2F1 (ENSNNAG00000007411) #31	PSPN (ENSNNAG00000007400) #32	ALKBH7 (ENSNNAG00000007389) #33	CLPP (ENSNNAG00000007375) #34	ENSNNAG00000007120	ENSNNAG00000019030
Anura	DUPLICATION
Anura	ANCESTRAL SPECIES	690																ENSGT00940000154063.C.a.b.fb #22	ENSGT00940000164486
Leishan spiny toad	DUPLICATION
Leishan spiny toad	DUPLICATION
Leishan spiny toad	DUPLICATION
Leishan spiny toad	MODERN SPECIES	6	ENSLLEG00000014097	ENSLLEG00000013954 #34	ENSLLEG00000013870	ENSLLEG00000013842	NACC1 (ENSLLEG00000013805)	STX10 (ENSLLEG00000013744)	IER2 (ENSLLEG00000013715)	YJU2B (ENSLLEG00000013539)	ENSLLEG00000013312	ENSLLEG00000013269	CACNA1A (ENSLLEG00000013048)	ENSLLEG00000012941 #31	ENSLLEG00000012514 #22	ENSLLEG00000012469	ENSLLEG00000012200 #22	ENSLLEG00000011916 #22	SLC25A23 (ENSLLEG00000011578) #29	ENSLLEG00000011499	ENSLLEG00000011461 #28	DENND1C (ENSLLEG00000011348) #27	ENSLLEG00000011260	KHSRP (ENSLLEG00000011156) #30	MRI1 (ENSLLEG00000011067)	ENSLLEG00000011033	ENSLLEG00000010795	NANOS3 (ENSLLEG00000010759)	ENSLLEG00000010735	ENSLLEG00000010700	ACHE (ENSLLEG00000010628)	ENSLLEG00000010606	C17orf49 (ENSLLEG00000010539)
Leishan spiny toad	MODERN SPECIES	134															ENSLLEG00000025740	ENSLLEG00000025459 #22
Leishan spiny toad	MODERN SPECIES	6	ENSLLEG00000010606	ACHE (ENSLLEG00000010628)	ENSLLEG00000010700	ENSLLEG00000010735	NANOS3 (ENSLLEG00000010759)	ENSLLEG00000010795	ENSLLEG00000011033	MRI1 (ENSLLEG00000011067)	KHSRP (ENSLLEG00000011156) #30	ENSLLEG00000011260	DENND1C (ENSLLEG00000011348) #27	ENSLLEG00000011461 #28	ENSLLEG00000011499	SLC25A23 (ENSLLEG00000011578) #29	ENSLLEG00000011916 #22	ENSLLEG00000012200 #22	ENSLLEG00000012469	ENSLLEG00000012514 #22	ENSLLEG00000012941 #31	CACNA1A (ENSLLEG00000013048)	ENSLLEG00000013269	ENSLLEG00000013312	YJU2B (ENSLLEG00000013539)	IER2 (ENSLLEG00000013715)	STX10 (ENSLLEG00000013744)	NACC1 (ENSLLEG00000013805)	ENSLLEG00000013842	ENSLLEG00000013870	ENSLLEG00000013954 #34	ENSLLEG00000014097	ENSLLEG00000014216
Leishan spiny toad	MODERN SPECIES	6	ENSLLEG00000014549	ENSLLEG00000014272	ENSLLEG00000014216	ENSLLEG00000014097	ENSLLEG00000013954 #34	ENSLLEG00000013870	ENSLLEG00000013842	NACC1 (ENSLLEG00000013805)	STX10 (ENSLLEG00000013744)	IER2 (ENSLLEG00000013715)	YJU2B (ENSLLEG00000013539)	ENSLLEG00000013312	ENSLLEG00000013269	CACNA1A (ENSLLEG00000013048)	ENSLLEG00000012941 #31	ENSLLEG00000012514 #22	ENSLLEG00000012469	ENSLLEG00000012200 #22	ENSLLEG00000011916 #22	SLC25A23 (ENSLLEG00000011578) #29	ENSLLEG00000011499	ENSLLEG00000011461 #28	DENND1C (ENSLLEG00000011348) #27	ENSLLEG00000011260	KHSRP (ENSLLEG00000011156) #30	MRI1 (ENSLLEG00000011067)	ENSLLEG00000011033	ENSLLEG00000010795	NANOS3 (ENSLLEG00000010759)	ENSLLEG00000010735	ENSLLEG00000010700
Frog	DUPLICATION
Frog	DUPLICATION
Frog	DUPLICATION
Frog	MODERN SPECIES	3	mri1 (ENSXETG00000021867)	khsrp (ENSXETG00000021862) #30	slc25a23 (ENSXETG00000024509) #29	crb3 (ENSXETG00000024510) #28	dennd1c (ENSXETG00000024511) #27	tubb4a (ENSXETG00000021860)	ENSXETG00000042646 #22	c3p1 (ENSXETG00000048045) #22	ENSXETG00000045964	c3 (ENSXETG00000017270) #22	XB5961369 [provisional:plpp3] (ENSXETG00000017268)	ENSXETG00000034841	ENSXETG00000037171	ENSXETG00000032992 #22	TNFSF14 (ENSXETG00000047773) #23	ENSXETG00000031312 #22	ddx27 (ENSXETG00000017231)	arrb2 (ENSXETG00000044534)	pelp1 (ENSXETG00000017229)	rnasek (ENSXETG00000017228)	c17orf49 (ENSXETG00000017227)	ENSXETG00000025735	ache (ENSXETG00000017226)	ENSXETG00000046780	ENSXETG00000041616	ENSXETG00000049495	ENSXETG00000041873	ENSXETG00000047869	ENSXETG00000041628	ENSXETG00000048529	ENSXETG00000046002
Frog	MODERN SPECIES	3	ENSXETG00000025735	c17orf49 (ENSXETG00000017227)	rnasek (ENSXETG00000017228)	pelp1 (ENSXETG00000017229)	arrb2 (ENSXETG00000044534)	ddx27 (ENSXETG00000017231)	ENSXETG00000031312 #22	TNFSF14 (ENSXETG00000047773) #23	ENSXETG00000032992 #22	ENSXETG00000037171	ENSXETG00000034841	XB5961369 [provisional:plpp3] (ENSXETG00000017268)	c3 (ENSXETG00000017270) #22	ENSXETG00000045964	c3p1 (ENSXETG00000048045) #22	ENSXETG00000042646 #22	tubb4a (ENSXETG00000021860)	dennd1c (ENSXETG00000024511) #27	crb3 (ENSXETG00000024510) #28	slc25a23 (ENSXETG00000024509) #29	khsrp (ENSXETG00000021862) #30	mri1 (ENSXETG00000021867)	c19orf53 (ENSXETG00000038713)	zswim4 (ENSXETG00000021870)	NANOS3 (ENSXETG00000021874)	cc2d1a (ENSXETG00000005556)	ENSXETG00000037742	dcaf15 (ENSXETG00000005570)	rfx1 (ENSXETG00000005567)	rln3 (ENSXETG00000033085)	ENSXETG00000035478
Frog	MODERN SPECIES	3	dcaf15 (ENSXETG00000005570)	ENSXETG00000037742	cc2d1a (ENSXETG00000005556)	NANOS3 (ENSXETG00000021874)	zswim4 (ENSXETG00000021870)	c19orf53 (ENSXETG00000038713)	mri1 (ENSXETG00000021867)	khsrp (ENSXETG00000021862) #30	slc25a23 (ENSXETG00000024509) #29	crb3 (ENSXETG00000024510) #28	dennd1c (ENSXETG00000024511) #27	tubb4a (ENSXETG00000021860)	ENSXETG00000042646 #22	c3p1 (ENSXETG00000048045) #22	ENSXETG00000045964	c3 (ENSXETG00000017270) #22	XB5961369 [provisional:plpp3] (ENSXETG00000017268)	ENSXETG00000034841	ENSXETG00000037171	ENSXETG00000032992 #22	TNFSF14 (ENSXETG00000047773) #23	ENSXETG00000031312 #22	ddx27 (ENSXETG00000017231)	arrb2 (ENSXETG00000044534)	pelp1 (ENSXETG00000017229)	rnasek (ENSXETG00000017228)	c17orf49 (ENSXETG00000017227)	ENSXETG00000025735	ache (ENSXETG00000017226)	ENSXETG00000046780	ENSXETG00000041616
Frog	MODERN SPECIES	3	rln3 (ENSXETG00000033085)	rfx1 (ENSXETG00000005567)	dcaf15 (ENSXETG00000005570)	ENSXETG00000037742	cc2d1a (ENSXETG00000005556)	NANOS3 (ENSXETG00000021874)	zswim4 (ENSXETG00000021870)	c19orf53 (ENSXETG00000038713)	mri1 (ENSXETG00000021867)	khsrp (ENSXETG00000021862) #30	slc25a23 (ENSXETG00000024509) #29	crb3 (ENSXETG00000024510) #28	dennd1c (ENSXETG00000024511) #27	tubb4a (ENSXETG00000021860)	ENSXETG00000042646 #22	c3p1 (ENSXETG00000048045) #22	ENSXETG00000045964	c3 (ENSXETG00000017270) #22	XB5961369 [provisional:plpp3] (ENSXETG00000017268)	ENSXETG00000034841	ENSXETG00000037171	ENSXETG00000032992 #22	TNFSF14 (ENSXETG00000047773) #23	ENSXETG00000031312 #22	ddx27 (ENSXETG00000017231)	arrb2 (ENSXETG00000044534)	pelp1 (ENSXETG00000017229)	rnasek (ENSXETG00000017228)	c17orf49 (ENSXETG00000017227)	ENSXETG00000025735	ache (ENSXETG00000017226)
Anura	ANCESTRAL SPECIES	648																ENSGT00940000154063.C.a.b.gb #22	ENSGT01060000248544.a.a.b.a.a #23
Frog	MODERN SPECIES	3	zswim4 (ENSXETG00000021870)	c19orf53 (ENSXETG00000038713)	mri1 (ENSXETG00000021867)	khsrp (ENSXETG00000021862) #30	slc25a23 (ENSXETG00000024509) #29	crb3 (ENSXETG00000024510) #28	dennd1c (ENSXETG00000024511) #27	tubb4a (ENSXETG00000021860)	ENSXETG00000042646 #22	c3p1 (ENSXETG00000048045) #22	ENSXETG00000045964	c3 (ENSXETG00000017270) #22	XB5961369 [provisional:plpp3] (ENSXETG00000017268)	ENSXETG00000034841	ENSXETG00000037171	ENSXETG00000032992 #22	TNFSF14 (ENSXETG00000047773) #23	ENSXETG00000031312 #22	ddx27 (ENSXETG00000017231)	arrb2 (ENSXETG00000044534)	pelp1 (ENSXETG00000017229)	rnasek (ENSXETG00000017228)	c17orf49 (ENSXETG00000017227)	ENSXETG00000025735	ache (ENSXETG00000017226)	ENSXETG00000046780	ENSXETG00000041616	ENSXETG00000049495	ENSXETG00000041873	ENSXETG00000047869	ENSXETG00000041628
Leishan spiny toad	MODERN SPECIES	6	ENSLLEG00000012548	ENSLLEG00000012587	ENSLLEG00000012606	ENSLLEG00000012635	ENSLLEG00000012653	ENSLLEG00000012671	ENSLLEG00000012687	ENSLLEG00000012746	ENSLLEG00000012802	ENSLLEG00000012815	ENSLLEG00000012863	ENSLLEG00000012934	ENSLLEG00000012959	ENSLLEG00000008758	ENSLLEG00000008993 #23	ENSLLEG00000009084 #22	ARRB2 (ENSLLEG00000009872)	ENSLLEG00000010319	RNASEK (ENSLLEG00000010493)	C17orf49 (ENSLLEG00000010539)	ENSLLEG00000010606	ACHE (ENSLLEG00000010628)	ENSLLEG00000010700	ENSLLEG00000010735	NANOS3 (ENSLLEG00000010759)	ENSLLEG00000010795	ENSLLEG00000011033	MRI1 (ENSLLEG00000011067)	KHSRP (ENSLLEG00000011156) #30	ENSLLEG00000011260	DENND1C (ENSLLEG00000011348) #27
Coelacanth	DUPLICATION
Coelacanth	MODERN SPECIES	427	PSPN (ENSLACG00000008652) #32	GTF2F1 (ENSLACG00000009109) #31	YJU2B (ENSLACG00000009382)	WDR83OS (ENSLACG00000009606)	ENSLACG00000009734	CACNA1A (ENSLACG00000011353)	IER2 (ENSLACG00000014052)	STX10 (ENSLACG00000014101)	NACC1 (ENSLACG00000014358)	TRMT1 (ENSLACG00000014585)	MAN2B1 (ENSLACG00000014740)	SH2D3A (ENSLACG00000015130) #19	ENSLACG00000015863	GPR108 (ENSLACG00000015892) #21	ENSLACG00000016107	ENSLACG00000016227 #22	ENSLACG00000016476 #22	ENSLACG00000022202	TNFSF14 (ENSLACG00000016891) #23
Coelacanth	MODERN SPECIES	427														TNFSF14 (ENSLACG00000016891) #23	ENSLACG00000022202	ENSLACG00000016476 #22	ENSLACG00000016227 #22	ENSLACG00000016107	GPR108 (ENSLACG00000015892) #21	ENSLACG00000015863	SH2D3A (ENSLACG00000015130) #19	MAN2B1 (ENSLACG00000014740)	TRMT1 (ENSLACG00000014585)	NACC1 (ENSLACG00000014358)	STX10 (ENSLACG00000014101)	IER2 (ENSLACG00000014052)	CACNA1A (ENSLACG00000011353)	ENSLACG00000009734	WDR83OS (ENSLACG00000009606)	YJU2B (ENSLACG00000009382)	GTF2F1 (ENSLACG00000009109) #31
Actinopterygii	ANCESTRAL SPECIES																	ENSGT00940000154063.C.a.b #22
Reedfish	DUPLICATION
Reedfish	DUPLICATION
Reedfish	MODERN SPECIES	8	ppap2d (ENSECRG00000021072)	ENSECRG00000021066	ENSECRG00000021059	ENSECRG00000021051	ENSECRG00000021043	ADGRL1 (ENSECRG00000021027)	SYDE1 (ENSECRG00000020998)	CYP4F8 (ENSECRG00000020958)	PNPLA6 (ENSECRG00000020841)	ENSECRG00000019394	ENSECRG00000019219	ENSECRG00000019118	ENSECRG00000019077	ENSECRG00000019019	ENSECRG00000018535 #22	ENSECRG00000018274 #22	ENSECRG00000017655 #22	asf1ba (ENSECRG00000017423)	prkacaa (ENSECRG00000017270)	ENSECRG00000017191	zgc:136908 (ENSECRG00000015757)	ndufb7 (ENSECRG00000015512)	tecrb (ENSECRG00000015402)	dnajb1b (ENSECRG00000015321)	gipc1 (ENSECRG00000015291)	ENSECRG00000015260	ENSECRG00000015099	nxnl1 (ENSECRG00000015036)	colgalt1b (ENSECRG00000014991)	ENSECRG00000014967	pgls (ENSECRG00000014935)
Reedfish	MODERN SPECIES	8	ENSECRG00000021084 #23	ppap2d (ENSECRG00000021072)	ENSECRG00000021066	ENSECRG00000021059	ENSECRG00000021051	ENSECRG00000021043	ADGRL1 (ENSECRG00000021027)	SYDE1 (ENSECRG00000020998)	CYP4F8 (ENSECRG00000020958)	PNPLA6 (ENSECRG00000020841)	ENSECRG00000019394	ENSECRG00000019219	ENSECRG00000019118	ENSECRG00000019077	ENSECRG00000019019	ENSECRG00000018535 #22	ENSECRG00000018274 #22	ENSECRG00000017655 #22	asf1ba (ENSECRG00000017423)	prkacaa (ENSECRG00000017270)	ENSECRG00000017191	zgc:136908 (ENSECRG00000015757)	ndufb7 (ENSECRG00000015512)	tecrb (ENSECRG00000015402)	dnajb1b (ENSECRG00000015321)	gipc1 (ENSECRG00000015291)	ENSECRG00000015260	ENSECRG00000015099	nxnl1 (ENSECRG00000015036)	colgalt1b (ENSECRG00000014991)	ENSECRG00000014967
Reedfish	MODERN SPECIES	8	slc27a1a (ENSECRG00000014897)	pgls (ENSECRG00000014935)	ENSECRG00000014967	colgalt1b (ENSECRG00000014991)	nxnl1 (ENSECRG00000015036)	ENSECRG00000015099	ENSECRG00000015260	gipc1 (ENSECRG00000015291)	dnajb1b (ENSECRG00000015321)	tecrb (ENSECRG00000015402)	ndufb7 (ENSECRG00000015512)	zgc:136908 (ENSECRG00000015757)	ENSECRG00000017191	prkacaa (ENSECRG00000017270)	asf1ba (ENSECRG00000017423)	ENSECRG00000017655 #22	ENSECRG00000018274 #22	ENSECRG00000018535 #22	ENSECRG00000019019	ENSECRG00000019077	ENSECRG00000019118	ENSECRG00000019219	ENSECRG00000019394	PNPLA6 (ENSECRG00000020841)	CYP4F8 (ENSECRG00000020958)	SYDE1 (ENSECRG00000020998)	ADGRL1 (ENSECRG00000021027)	ENSECRG00000021043	ENSECRG00000021051	ENSECRG00000021059	ENSECRG00000021066
Neopterygii	ANCESTRAL SPECIES	860															ENSGT00940000166336	ENSGT00940000154063.C.a.b #22
Osteoglossocephalai	ANCESTRAL SPECIES	473															ENSGT00940000166336	ENSGT00940000154063.C.a.b #22	ENSGT00940000156907.p.b.a	ENSGT01030000234599.a.b.d.a.b.b	ENSGT01030000234599.a.b.d.b.a.a
Osteoglossiformes	DUPLICATION
Osteoglossiformes	DUPLICATION
Osteoglossiformes	ANCESTRAL SPECIES	408															ENSGT00940000166336	ENSGT00940000154063.C.a.b.e.a #22	ENSGT00980000199397	ENSGT00390000004692.d.a	ENSGT00940000166522	ENSGT00530000063936.a.a	ENSGT00940000166147	ENSGT00950000182886.a.a.b.s	ENSGT00940000164566.a	ENSGT00390000003420.a.a.b
Asian bonytongue	DUPLICATION
Asian bonytongue	DUPLICATION
Asian bonytongue	DUPLICATION
Asian bonytongue	MODERN SPECIES		EPN3 (ENSSFOG00015026511)	ENSSFOG00015022621	ENSSFOG00015032170	ENSSFOG00015022695	GBGT1 (ENSSFOG00015022970)	ENSSFOG00015023001	ENSSFOG00015027264	hgs (ENSSFOG00015023010)	zgc:103625 (ENSSFOG00015023041)	MRPL12 (ENSSFOG00015023051)	slc25a10b (ENSSFOG00015023070)	ENSSFOG00015023083	ENSSFOG00015029292	ENSSFOG00015029962	ENSSFOG00015023102	ENSSFOG00015024300 #22	ENSSFOG00015024438 #22	ENSSFOG00015033068 #22	ENSSFOG00015019080 #22	asf1ba (ENSSFOG00015019537)	prkacab (ENSSFOG00015019550)	ENSSFOG00015019580	zgc:136908 (ENSSFOG00015019592)	ndufb7 (ENSSFOG00015019628)	tecrb (ENSSFOG00015019648)	dnajb1b (ENSSFOG00015019689)	gipc1 (ENSSFOG00015019706)	ENSSFOG00015019770	ENSSFOG00015001232	ENSSFOG00015030028	ENSSFOG00015020062
Asian bonytongue	MODERN SPECIES		ENSSFOG00015022621	ENSSFOG00015032170	ENSSFOG00015022695	GBGT1 (ENSSFOG00015022970)	ENSSFOG00015023001	ENSSFOG00015027264	hgs (ENSSFOG00015023010)	zgc:103625 (ENSSFOG00015023041)	MRPL12 (ENSSFOG00015023051)	slc25a10b (ENSSFOG00015023070)	ENSSFOG00015023083	ENSSFOG00015029292	ENSSFOG00015029962	ENSSFOG00015023102	ENSSFOG00015024300 #22	ENSSFOG00015024438 #22	ENSSFOG00015033068 #22	ENSSFOG00015019080 #22	asf1ba (ENSSFOG00015019537)	prkacab (ENSSFOG00015019550)	ENSSFOG00015019580	zgc:136908 (ENSSFOG00015019592)	ndufb7 (ENSSFOG00015019628)	tecrb (ENSSFOG00015019648)	dnajb1b (ENSSFOG00015019689)	gipc1 (ENSSFOG00015019706)	ENSSFOG00015019770	ENSSFOG00015001232	ENSSFOG00015030028	ENSSFOG00015020062	ENSSFOG00015031868
Asian bonytongue	MODERN SPECIES		ENSSFOG00015022695	GBGT1 (ENSSFOG00015022970)	ENSSFOG00015023001	ENSSFOG00015027264	hgs (ENSSFOG00015023010)	zgc:103625 (ENSSFOG00015023041)	MRPL12 (ENSSFOG00015023051)	slc25a10b (ENSSFOG00015023070)	ENSSFOG00015023083	ENSSFOG00015029292	ENSSFOG00015029962	ENSSFOG00015023102	ENSSFOG00015024300 #22	ENSSFOG00015024438 #22	ENSSFOG00015033068 #22	ENSSFOG00015019080 #22	asf1ba (ENSSFOG00015019537)	prkacab (ENSSFOG00015019550)	ENSSFOG00015019580	zgc:136908 (ENSSFOG00015019592)	ndufb7 (ENSSFOG00015019628)	tecrb (ENSSFOG00015019648)	dnajb1b (ENSSFOG00015019689)	gipc1 (ENSSFOG00015019706)	ENSSFOG00015019770	ENSSFOG00015001232	ENSSFOG00015030028	ENSSFOG00015020062	ENSSFOG00015031868	ENSSFOG00015020092	ENSSFOG00015028196
Asian bonytongue	MODERN SPECIES		ENSSFOG00015032170	ENSSFOG00015022695	GBGT1 (ENSSFOG00015022970)	ENSSFOG00015023001	ENSSFOG00015027264	hgs (ENSSFOG00015023010)	zgc:103625 (ENSSFOG00015023041)	MRPL12 (ENSSFOG00015023051)	slc25a10b (ENSSFOG00015023070)	ENSSFOG00015023083	ENSSFOG00015029292	ENSSFOG00015029962	ENSSFOG00015023102	ENSSFOG00015024300 #22	ENSSFOG00015024438 #22	ENSSFOG00015033068 #22	ENSSFOG00015019080 #22	asf1ba (ENSSFOG00015019537)	prkacab (ENSSFOG00015019550)	ENSSFOG00015019580	zgc:136908 (ENSSFOG00015019592)	ndufb7 (ENSSFOG00015019628)	tecrb (ENSSFOG00015019648)	dnajb1b (ENSSFOG00015019689)	gipc1 (ENSSFOG00015019706)	ENSSFOG00015019770	ENSSFOG00015001232	ENSSFOG00015030028	ENSSFOG00015020062	ENSSFOG00015031868	ENSSFOG00015020092
P. kingsleyae	MODERN SPECIES	815															ENSPKIG00000008693	ENSPKIG00000007813 #22	ENSPKIG00000007355 #22	ENSPKIG00000007345
Osteoglossiformes	ANCESTRAL SPECIES																	ENSGT00940000154063.C.a.b.e.b #22
P. kingsleyae	MODERN SPECIES	815														ENSPKIG00000008693	ENSPKIG00000007813 #22	ENSPKIG00000007355 #22	ENSPKIG00000007345
Osteoglossiformes	ANCESTRAL SPECIES	112	ENSGT00710000106790.w.b	ENSGT00390000007438	ENSGT00940000155384.b.a	ENSGT00940000165001.a.b	ENSGT00940000164991.a.b	ENSGT00940000153649.B	ENSGT00940000154888.a	ENSGT00390000014495.n	ENSGT00940000174975.b	ENSGT01100000263533.b.b.b.a.b.a.a	ENSGT00390000019377.a.a.a	ENSGT00390000000230.j	ENSGT00390000014585 #33	ENSGT00950000182993.B.b #32	ENSGT00530000063615.b	ENSGT00940000154063.C.a.b.f #22	ENSGT00940000156907.p.b.a	ENSGT01030000234599.a.b.d.a.b.b	ENSGT01030000234599.a.b.d.b.a.a	ENSGT00940000169565	ENSGT00940000166346	ENSGT00390000000337	ENSGT00390000006103	ENSGT00940000158452	ENSGT01050000244890.a.a.b	ENSGT00950000182966.C.b.a	ENSGT00940000160923	ENSGT00950000182933.C.i	ENSGT00390000010993	ENSGT00940000155451	ENSGT00390000014633
P. kingsleyae	MODERN SPECIES	141	ELFN2 (ENSPKIG00000005489)	mfng (ENSPKIG00000005456)	sult3st4 (ENSPKIG00000005421)	man2b1 (ENSPKIG00000005364)	ENSPKIG00000005348	TRMT1 (ENSPKIG00000005309)	NACC1 (ENSPKIG00000005272)	stx10 (ENSPKIG00000005243)	ier2a (ENSPKIG00000005224)	cacna1ab (ENSPKIG00000005131)	wdr83os (ENSPKIG00000005091)	wdr83 (ENSPKIG00000005064)	alkbh7 (ENSPKIG00000005035) #33	PSPN (ENSPKIG00000005019) #32	yju2b (ENSPKIG00000004976)	c3b.2 (ENSPKIG00000004835) #22	MGAT3 (ENSPKIG00000004750)	ENSPKIG00000004722	ENSPKIG00000004711	ENSPKIG00000004687	TMPRSS6 (ENSPKIG00000004659)	ENSPKIG00000004637	ENSPKIG00000004623	ENSPKIG00000004609	ENSPKIG00000004576	atf4a (ENSPKIG00000004556)	ENSPKIG00000004545	ENSPKIG00000004471	ENSPKIG00000004421	ENSPKIG00000004396	ENSPKIG00000004365
Asian bonytongue	DUPLICATION
Asian bonytongue	MODERN SPECIES		mmp14b (ENSSFOG00015011416)	ENSSFOG00015025407	si:ch211-14a17.11 (ENSSFOG00015011510)	ENSSFOG00015025523	ENSSFOG00015022400	cbln12 (ENSSFOG00015011562)	chd8 (ENSSFOG00015011577)	ENSSFOG00015011696	supt16h (ENSSFOG00015011724)	ENSSFOG00015030234	ENSSFOG00015027938	casq1a (ENSSFOG00015011810)	PEA15 (ENSSFOG00015029835)	pcp4l1 (ENSSFOG00015011885)	ENSSFOG00015011910	ENSSFOG00015024525 #22	zgc:55733 (ENSSFOG00015012015)	ENSSFOG00015012106	apol1 (ENSSFOG00015029392)	ENSSFOG00015012174	ENSSFOG00015027509	zgc:66427 (ENSSFOG00015027016)	sdr39u1 (ENSSFOG00015012372)	ENSSFOG00015012393	parp2 (ENSSFOG00015012443)	ENSSFOG00015012481	ltb4r2b (ENSSFOG00015012493)	ENSSFOG00015012503	MYADM (ENSSFOG00015012530)	pex19 (ENSSFOG00015012542)	copa (ENSSFOG00015012569)
Asian bonytongue	MODERN SPECIES	12											wdr83os (ENSSFOG00015029520)	wdr83 (ENSSFOG00015003109)	PSPN (ENSSFOG00015003143) #32	alkbh7 (ENSSFOG00015003126) #33	yju2b (ENSSFOG00015028627)	c3b.2 (ENSSFOG00015003209) #22	ENSSFOG00015031716	ENSSFOG00015003403	ENSSFOG00015003804	cacna1ab (ENSSFOG00015003827)	ier2b (ENSSFOG00015004055)	stx10 (ENSSFOG00015004075)	NACC1 (ENSSFOG00015004099)	TRMT1 (ENSSFOG00015004139)	man2b1 (ENSSFOG00015004194)	ENSSFOG00015004321	ENSSFOG00015004331	ENSSFOG00015004369	ENSSFOG00015004595	ENSSFOG00015004629	mfng (ENSSFOG00015004666)
Clupeocephala	ANCESTRAL SPECIES	659															ENSGT00940000176087	ENSGT00940000154063.C.a.b #22	ENSGT00940000159039.b
Otomorpha	ANCESTRAL SPECIES	239													ENSGT00940000159016	ENSGT00950000182993.B.b #32	ENSGT00530000063615.b	ENSGT00940000154063.C.a.b #22	ENSGT00940000159039.b	ENSGT00940000155280.e	ENSGT00940000159318.n.b	ENSGT00940000163421.a.c	ENSGT00940000164876.b	ENSGT00940000158383.a	ENSGT00390000015189.e.b	ENSGT00940000157834.b	ENSGT00940000155577.g.a	ENSGT00940000155364.g.b	ENSGT00390000014091	ENSGT00940000160332.b	ENSGT00510000047820.k.b	ENSGT00390000000087	ENSGT00390000017673.a.a
Otophysi	ANCESTRAL SPECIES	71	ENSGT00390000009679	ENSGT00390000000549	ENSGT00390000001146	ENSGT00520000059926	ENSGT00940000158015.k.b	ENSGT00940000158246	ENSGT00940000154784.D.a.a.a	ENSGT00940000154784.D.b.c.a	ENSGT00940000154784.D.a.a.b.a.a	ENSGT00940000158672.d	ENSGT00390000001057	ENSGT00530000063402.b	ENSGT00940000159016	ENSGT00950000182993.B.b #32	ENSGT00530000063615.b.n	ENSGT00940000154063.C.a.b #22	ENSGT00940000159039.b	ENSGT00940000155280.e	ENSGT00940000159318.n.b	ENSGT00940000163421.a.c	ENSGT00940000164876.b	ENSGT00940000158383.a	ENSGT00940000157834.b	ENSGT00940000155577.g.a	ENSGT00940000155364.g.b	ENSGT00390000014091	ENSGT00940000160332.b	ENSGT00510000047820.k.b	ENSGT00390000000087	ENSGT00390000017673.a.a	ENSGT00390000014056.c.b
Characiphysae	ANCESTRAL SPECIES	78	ENSGT00390000009679	ENSGT00390000000549	ENSGT00390000001146	ENSGT00520000059926	ENSGT00940000158015.k.b	ENSGT00940000158246	ENSGT00940000154784.D.a.a.a	ENSGT00940000154784.D.b.c.a	ENSGT00940000154784.D.a.a.b.a.a	ENSGT00940000158672.d	ENSGT00390000001057	ENSGT00530000063402.b	ENSGT00940000159016	ENSGT00950000182993.B.b #32	ENSGT00530000063615.b.n	ENSGT00940000154063.C.a.b #22	ENSGT00940000159039.b	ENSGT00940000155280.e	ENSGT00940000159318.n.b	ENSGT00940000163421.a.c	ENSGT00940000164876.b	ENSGT00940000158383.a	ENSGT00940000157834.b	ENSGT00940000155577.g.a	ENSGT00940000155364.g.b	ENSGT00390000014091	ENSGT00940000160332.b	ENSGT00510000047820.k.b	ENSGT00390000000087	ENSGT00390000017673.a.a	ENSGT00390000014056.c.b
Characiphysae_b	ANCESTRAL SPECIES	178	ENSGT00390000009679	ENSGT00390000000549	ENSGT00390000001146	ENSGT00520000059926	ENSGT00940000158015.k.b	ENSGT00940000158246	ENSGT00940000154784.D.a.a.a	ENSGT00940000154784.D.b.c.a	ENSGT00940000154784.D.a.a.b.a.a	ENSGT00940000158672.d	ENSGT00390000001057	ENSGT00530000063402.b	ENSGT00940000159016	ENSGT00950000182993.B.b #32	ENSGT00530000063615.b.n	ENSGT00940000154063.C.a.b #22	ENSGT00940000159039.b	ENSGT00940000155280.e
Electric eel	DUPLICATION
Electric eel	MODERN SPECIES	264	DNAL4 (ENSEEEG00000024355)	nptxrb (ENSEEEG00000024356)	polr3f (ENSEEEG00000024357)	dzank1 (ENSEEEG00000024359)	kat14 (ENSEEEG00000024360)	rrbp1b (ENSEEEG00000024361)	AARS2 (ENSEEEG00000024362)	capn8 (ENSEEEG00000024378)	capn2b (ENSEEEG00000024416)	capn1b (ENSEEEG00000024427)	mrps28 (ENSEEEG00000024469)	sde2 (ENSEEEG00000024471)	wdr83 (ENSEEEG00000024472)	PSPN (ENSEEEG00000024473) #32	yju2b (ENSEEEG00000024475)	ENSEEEG00000024477 #22	ENSEEEG00000024478 #22	pdgfaa (ENSEEEG00000024479)	RS1 (ENSEEEG00000024483)	ppef1 (ENSEEEG00000024484)	ptpn4b (ENSEEEG00000024486)	MRAS (ENSEEEG00000024489)	ENSEEEG00000024490	PTH2R (ENSEEEG00000024491)	mgat5 (ENSEEEG00000024492)	TMEM163 (ENSEEEG00000024494)	ENSEEEG00000024496	ccnt2b (ENSEEEG00000024498)	ZRANB3 (ENSEEEG00000000150)	ENSEEEG00000000314	rnd3a (ENSEEEG00000000497)
Electric eel	MODERN SPECIES	264	nptxrb (ENSEEEG00000024356)	polr3f (ENSEEEG00000024357)	dzank1 (ENSEEEG00000024359)	kat14 (ENSEEEG00000024360)	rrbp1b (ENSEEEG00000024361)	AARS2 (ENSEEEG00000024362)	capn8 (ENSEEEG00000024378)	capn2b (ENSEEEG00000024416)	capn1b (ENSEEEG00000024427)	mrps28 (ENSEEEG00000024469)	sde2 (ENSEEEG00000024471)	wdr83 (ENSEEEG00000024472)	PSPN (ENSEEEG00000024473) #32	yju2b (ENSEEEG00000024475)	ENSEEEG00000024477 #22	ENSEEEG00000024478 #22	pdgfaa (ENSEEEG00000024479)	RS1 (ENSEEEG00000024483)	ppef1 (ENSEEEG00000024484)	ptpn4b (ENSEEEG00000024486)	MRAS (ENSEEEG00000024489)	ENSEEEG00000024490	PTH2R (ENSEEEG00000024491)	mgat5 (ENSEEEG00000024492)	TMEM163 (ENSEEEG00000024494)	ENSEEEG00000024496	ccnt2b (ENSEEEG00000024498)	ZRANB3 (ENSEEEG00000000150)	ENSEEEG00000000314	rnd3a (ENSEEEG00000000497)
Characoidei	ANCESTRAL SPECIES	213	ENSGT00390000000549	ENSGT00390000001146	ENSGT00520000059926	ENSGT00940000158015.k.b	ENSGT00940000158246	ENSGT00940000154784.D.a.a.a	ENSGT00940000154784.D.b.c.a	ENSGT00940000154784.D.b.d	ENSGT00940000154784.D.a.a.b.a.a	ENSGT00940000158672.d	ENSGT00390000001057	ENSGT00530000063402.b	ENSGT00940000159016	ENSGT00950000182993.B.b #32	ENSGT00530000063615.b.n	ENSGT00940000154063.C.a.b #22	ENSGT00940000159039.b	ENSGT00940000155280.e
Red-bellied piranha	MODERN SPECIES	559					ENSPNAG00000003358	ENSPNAG00000003362	capn2b (ENSPNAG00000017285)	capn2b (ENSPNAG00000017446)	capn1b (ENSPNAG00000006646)	ENSPNAG00000018596	mrps28 (ENSPNAG00000018621)	sde2 (ENSPNAG00000018632)	wdr83 (ENSPNAG00000018680)	ENSPNAG00000018694 #32	yju2b (ENSPNAG00000018736)	c3b.2 (ENSPNAG00000019243) #22	pdgfaa (ENSPNAG00000019293)	dnaja3b (ENSPNAG00000019335)
Mexicana tetra	MODERN SPECIES	50	gcga (ENSAMXG00000039471)	pcyt2 (ENSAMXG00000035632)	ENSAMXG00000031693	nptxrb (ENSAMXG00000029357)	ENSAMXG00000013873	ENSAMXG00000029688	capn8 (ENSAMXG00000013776)	ENSAMXG00000013724	capn2b (ENSAMXG00000013696)	capn1b (ENSAMXG00000013685)	mrps28 (ENSAMXG00000026324)	sde2 (ENSAMXG00000013678)	wdr83 (ENSAMXG00000013666)	PSPN (ENSAMXG00000026323) #32	yju2b (ENSAMXG00000043819)	c3b.2 (ENSAMXG00000013586) #22	ENSAMXG00000030648	pdgfaa (ENSAMXG00000013556)	add3a (ENSAMXG00000013538)	mxi1 (ENSAMXG00000043254)	dusp5 (ENSAMXG00000038296)	smc3 (ENSAMXG00000004461)	RBM20 (ENSAMXG00000004493)	pdcd4b (ENSAMXG00000004515)	bbip1 (ENSAMXG00000042694)	shoc2 (ENSAMXG00000004549)	adra2a (ENSAMXG00000025613)	ENSAMXG00000034690	ENSAMXG00000004573	ENSAMXG00000044000	ncf4 (ENSAMXG00000042800)
Channel catfish	DUPLICATION
Channel catfish	MODERN SPECIES	19	ENSIPUG00000013100	ENSIPUG00000013018	ENSIPUG00000012990	ENSIPUG00000012936	capn8 (ENSIPUG00000012755)	ENSIPUG00000012721	capn2b (ENSIPUG00000012590)	mrps28 (ENSIPUG00000012566)	capn1b (ENSIPUG00000012379)	sde2 (ENSIPUG00000012341)	PSPN (ENSIPUG00000012323) #32	wdr83 (ENSIPUG00000012214)	sde2 (ENSIPUG00000012173)	ccdc130 (ENSIPUG00000012085)	ENSIPUG00000011979 #22	ENSIPUG00000011888 #22	pdgfaa (ENSIPUG00000011860)	dnaja3b (ENSIPUG00000011776)	vasna (ENSIPUG00000011744)	ENSIPUG00000011734	ENSIPUG00000011701	b3galt10.2 (ENSIPUG00000011682)	glis2 (ENSIPUG00000011659)	SRL (ENSIPUG00000011609)	adcy9 (ENSIPUG00000011526)	CREBBP (ENSIPUG00000011433)	ENSIPUG00000011406	mcrip2 (ENSIPUG00000011354)	tmem186 (ENSIPUG00000011344)	gde1 (ENSIPUG00000011321)	cxcl12b (ENSIPUG00000011297)
Channel catfish	MODERN SPECIES	19	aars2 (ENSIPUG00000013115)	ENSIPUG00000013100	ENSIPUG00000013018	ENSIPUG00000012990	ENSIPUG00000012936	capn8 (ENSIPUG00000012755)	ENSIPUG00000012721	capn2b (ENSIPUG00000012590)	mrps28 (ENSIPUG00000012566)	capn1b (ENSIPUG00000012379)	sde2 (ENSIPUG00000012341)	PSPN (ENSIPUG00000012323) #32	wdr83 (ENSIPUG00000012214)	sde2 (ENSIPUG00000012173)	ccdc130 (ENSIPUG00000012085)	ENSIPUG00000011979 #22	ENSIPUG00000011888 #22	pdgfaa (ENSIPUG00000011860)	dnaja3b (ENSIPUG00000011776)	vasna (ENSIPUG00000011744)	ENSIPUG00000011734	ENSIPUG00000011701	b3galt10.2 (ENSIPUG00000011682)	glis2 (ENSIPUG00000011659)	SRL (ENSIPUG00000011609)	adcy9 (ENSIPUG00000011526)	CREBBP (ENSIPUG00000011433)	ENSIPUG00000011406	mcrip2 (ENSIPUG00000011354)	tmem186 (ENSIPUG00000011344)	gde1 (ENSIPUG00000011321)
Cyprinoidei	DUPLICATION
Cyprinoidei	ANCESTRAL SPECIES	17	ENSGT00940000157834.b	ENSGT00940000158383.a	ENSGT00940000164876.b	ENSGT00940000163421.a.c.b	ENSGT00940000163421.a.c.a	ENSGT00940000154784.D.a.a.a	ENSGT00940000154784.D.b.c.a	ENSGT00940000154784.D.a.a.b.a.a	ENSGT00940000158672.d	ENSGT00390000001057	ENSGT00530000063402.b	ENSGT00940000159016	ENSGT00950000182993.B.b #32	ENSGT00530000063615.b.n	ENSGT00530000063615.b.m	ENSGT00940000154063.C.a.b.k #22	ENSGT00940000176087	ENSGT00940000154063.C.a.b.l #22	ENSGT00940000159039.b	ENSGT00940000155280.e	ENSGT00940000159318.n.b	ENSGT00940000158246	ENSGT00940000158015.k.b	ENSGT00390000001146	ENSGT00390000000549	ENSGT00390000009679	ENSGT01060000248591.a.a.a.b.b	ENSGT00940000161265.e.a.b	ENSGT00950000182951.A.a.b.a	ENSGT00990000204053	ENSGT00530000064273.a.b.p
Cyprininae	DUPLICATION
Cyprininae	ANCESTRAL SPECIES	638									ENSGT00940000154784.D.a.a.b.a.a.l	ENSGT00940000158672.d.a	ENSGT00390000001057	ENSGT00530000063402.b.l	ENSGT00940000159016.k	ENSGT00950000182993.B.b.m #32	ENSGT00530000063615.b.n.a	ENSGT00940000154063.C.a.b.k.a #22	ENSGT00940000159039.b.d	ENSGT00940000155280.e.d	ENSGT00940000159318.n.b.a	ENSGT00940000164876.b.f.b.a	ENSGT00940000158246.c.b	ENSGT00940000158015.k.b.c	ENSGT00390000001146.a
Goldfish	MODERN SPECIES	41	ENSCARG00000037456	ENSCARG00000037446	RNF123 (ENSCARG00000037082)	ENSCARG00000036999	ENSCARG00000036993	ENSCARG00000036842	atpv0e2 (ENSCARG00000036787)	ENSCARG00000036781	capn2b (ENSCARG00000030450)	capn1b (ENSCARG00000029614)	mrps28 (ENSCARG00000029551)	sde2 (ENSCARG00000029526)	wdr83 (ENSCARG00000029502)	ENSCARG00000029496 #32	yju2b (ENSCARG00000029465)	ENSCARG00000029323 #22	PDGFA (ENSCARG00000029294)	ENSCARG00000029253	ENSCARG00000029241	vasna (ENSCARG00000029237)	ENSCARG00000029234	ENSCARG00000029224	rrbp1b (ENSCARG00000028692)	kat14 (ENSCARG00000028646)	polr3f (ENSCARG00000028635)	nptxrb (ENSCARG00000028622)	dnal4b (ENSCARG00000028612)	ENSCARG00000028606	ENSCARG00000028566	dag1 (ENSCARG00000028529)	pcbp4 (ENSCARG00000028522)
Cyprininae_a	ANCESTRAL SPECIES	40	ENSGT00940000157834.b.b	ENSGT00940000158383.a.d	ENSGT00940000164876.b.e.a.a.b	ENSGT00940000163421.a.c.b.a.b	ENSGT00940000163421.a.c.a.b	ENSGT00940000154784.D.a.a.a.d	ENSGT00940000154784.D.b.c.a.k.a.a	ENSGT00940000154784.D.b.c.a.k.a.b	ENSGT00940000154784.D.a.a.b.a.a.l	ENSGT00940000158672.d.a	ENSGT00390000001057.i	ENSGT00530000063402.b.l	ENSGT00940000159016.k	ENSGT00950000182993.B.b.m #32	ENSGT00530000063615.b.n.a	ENSGT00940000154063.C.a.b.k.a #22	ENSGT00940000159039.b.d	ENSGT00940000155280.e.d	ENSGT00940000159318.n.b.a	ENSGT00940000164876.b.f.b.a	ENSGT00940000164876.b.f.a.a	ENSGT00940000158246.c.b	ENSGT00940000158015.k.b.c	ENSGT00390000001146.a	ENSGT00390000000549	ENSGT00390000009679.s	ENSGT01060000248591.a.a.a.b.b.b	ENSGT00940000161265.e.a.b.a	ENSGT01010000222294.c.b.b.b.d.b.a.f	ENSGT00530000064273.a.b.p.a	ENSGT00530000064273.a.b.o.g.a
Common carp reference	MODERN SPECIES	43	ENSCCRG00000045531	SRL (ENSCCRG00000066713)	ENSCCRG00000058824	ENSCCRG00000010848	ENSCCRG00000010852	ENSCCRG00000030900	capn2l (ENSCCRG00000010895)	capn8 (ENSCCRG00000066004)	capn8 (ENSCCRG00000008174)	capn2b (ENSCCRG00000013561)	capn1b (ENSCCRG00000013959)	sde2 (ENSCCRG00000070333)	mrps28 (ENSCCRG00000034469)	ENSCCRG00000080947 #32	yju2b (ENSCCRG00000031711)	ENSCCRG00000034487 #22	ENSCCRG00000034508	ENSCCRG00000072353	vasna (ENSCCRG00000075566)	ENSCCRG00000038941	ENSCCRG00000009229	ENSCCRG00000077300	ENSCCRG00000009238	rrbp1b (ENSCCRG00000009312)	kat14 (ENSCCRG00000080002)	dzank1 (ENSCCRG00000009448)	polr3f (ENSCCRG00000009452)	nptxrb (ENSCCRG00000009461)	dnal4b (ENSCCRG00000067771)	ENSCCRG00000026817	ENSCCRG00000002880
Golden-line barbel	MODERN SPECIES	1311									capn2b (ENSSGRG00000014647)	capn1b (ENSSGRG00000014055)	mrps28 (ENSSGRG00000014051)	sde2 (ENSSGRG00000014050)	wdr83 (ENSSGRG00000014049)	PSPN (ENSSGRG00000014048) #32	yju2b (ENSSGRG00000013967)	ENSSGRG00000013961 #22	PDGFA (ENSSGRG00000013956)	dnaja3b (ENSSGRG00000013951)	vasna (ENSSGRG00000013950)	ENSSGRG00000013949
Cyprininae	ANCESTRAL SPECIES	289	ENSGT00940000155577.g.a.d	ENSGT00940000157834.b.a	ENSGT00940000158383.a.c	ENSGT00940000164876.b.e.a.b	ENSGT00940000163421.a.c.b.a.a	ENSGT00940000163421.a.c.a.a	ENSGT00940000154784.D.a.a.a.c	ENSGT00940000154784.D.b.c.a.l	ENSGT00940000154784.D.a.a.b.a.a.k	ENSGT00940000158672.d.b	ENSGT00530000063402.b.k	ENSGT00940000159016.l	ENSGT00530000063615.b.n.b	ENSGT00950000182993.B.b.n #32	ENSGT00530000063615.b.m	ENSGT00940000154063.C.a.b.k.b #22	ENSGT00940000159039.b.c.b	ENSGT00940000176087	ENSGT00940000154063.C.a.b.l #22	ENSGT00940000159039.b.c.a.b	ENSGT00940000155280.e.c	ENSGT00940000159318.n.b.b	ENSGT00940000164876.b.e.b	ENSGT00940000164876.b.f.b.b	ENSGT00940000158246.c.a	ENSGT00940000158015.k.b.d	ENSGT00390000001146.b	ENSGT00390000000549	ENSGT00390000009679	ENSGT01060000248591.a.a.a.b.b.b	ENSGT00940000161265.e.a.b.a
Goldfish	MODERN SPECIES	14	mcrip2 (ENSCARG00000023074)	ENSCARG00000023054	CREBBP (ENSCARG00000021030)	ADCY9 (ENSCARG00000020968)	SRL (ENSCARG00000020959)	GLIS2 (ENSCARG00000020950)	ENSCARG00000020944	ENSCARG00000020941	ENSCARG00000020930	ENSCARG00000020927	capn2l (ENSCARG00000020670)	capn2b (ENSCARG00000019958)	capn1b (ENSCARG00000015708)	sde2 (ENSCARG00000015627)	PSPN (ENSCARG00000015623) #32	ENSCARG00000015609 #22	ENSCARG00000015597 #22	PDGFA (ENSCARG00000015589)	dnaja3b (ENSCARG00000015037)	vasna (ENSCARG00000015016)	ENSCARG00000015005	ENSCARG00000015001	ENSCARG00000014996	AARS2 (ENSCARG00000014934)	rrbp1b (ENSCARG00000014805)	kat14 (ENSCARG00000014667)	dzank1 (ENSCARG00000014647)	nptxrb (ENSCARG00000014637)	dnal4b (ENSCARG00000014630)	ENSCARG00000014593	ENSCARG00000014590
Cyprininae_a	ANCESTRAL SPECIES	164	ENSGT00940000155577.g.a.d	ENSGT00940000157834.b.a	ENSGT00940000158383.a.c	ENSGT00940000163421.a.c.b.a.a	ENSGT00940000163421.a.c.a.a	ENSGT00940000154784.D.a.a.a.c	ENSGT00940000154784.D.b.c.a.l	ENSGT00940000154784.D.a.a.b.a.a.k	ENSGT00940000158672.d.b	ENSGT00390000001057.j	ENSGT00530000063402.b.k	ENSGT00940000159016.l	ENSGT00530000063615.b.n.b	ENSGT00950000182993.B.b.n #32	ENSGT00530000063615.b.m	ENSGT00940000154063.C.a.b.k.b #22	ENSGT00940000159039.b.c.b	ENSGT00940000176087	ENSGT00940000154063.C.a.b.l #22	ENSGT00940000159039.b.c.a.a	ENSGT00940000155280.e.c	ENSGT00940000159318.n.b.b	ENSGT00940000164876.b.e.a.a.a	ENSGT00940000164876.b.f.b.b	ENSGT00940000158246.c.a	ENSGT00940000158015.k.b.d	ENSGT00390000001146.b	ENSGT00390000009679.t	ENSGT01060000248591.a.a.a.b.b.a	ENSGT00940000161265.e.a.b.b	ENSGT00950000182951.A.a.b.a
Common carp reference	MODERN SPECIES	5	ADCY9 (ENSCCRG00000054306)	SRL (ENSCCRG00000071137)	GLIS2 (ENSCCRG00000080058)	ENSCCRG00000030961	ENSCCRG00000030897	ENSCCRG00000079659	capn8 (ENSCCRG00000004554)	capn8 (ENSCCRG00000075681)	capn2b (ENSCCRG00000036470)	capn1b (ENSCCRG00000031870)	mrps28 (ENSCCRG00000031741)	sde2 (ENSCCRG00000031727)	ENSCCRG00000069003	ENSCCRG00000034478 #32	ENSCCRG00000055304	ENSCCRG00000074802 #22	ENSCCRG00000053174	dnaja3b (ENSCCRG00000009119)	vasna (ENSCCRG00000038943)	ENSCCRG00000009218	ENSCCRG00000069754	ENSCCRG00000062596	rrbp1b (ENSCCRG00000030656)	kat14 (ENSCCRG00000009365)	polr3f (ENSCCRG00000009484)	nptxrb (ENSCCRG00000061315)	dnal4b (ENSCCRG00000078277)	ENSCCRG00000009489	ENSCCRG00000068246	ENSCCRG00000061688	ENSCCRG00000009933
Golden-line barbel	MODERN SPECIES	984					ENSSGRG00000006680	ENSSGRG00000006682	ENSSGRG00000006684	capn2l (ENSSGRG00000006890)	ENSSGRG00000014095	capn2b (ENSSGRG00000014109)	capn1b (ENSSGRG00000015389)	mrps28 (ENSSGRG00000020453)	sde2 (ENSSGRG00000020454)	wdr83 (ENSSGRG00000020457)	yju2b (ENSSGRG00000020468)	ENSSGRG00000020555 #22	ENSSGRG00000020557	ENSSGRG00000020558 #22	ENSSGRG00000020562	dnaja3b (ENSSGRG00000020564)	ENSSGRG00000020566	vasna (ENSSGRG00000020568)
Zebrafish	DUPLICATION
Zebrafish	MODERN SPECIES	14	ADCY9 (ENSDARG00000100869)	SRL (ENSDARG00000112959)	ENSDARG00000078388	b3galt10.1 (ENSDARG00000061432)	ENSDARG00000088591	ENSDARG00000114948	capn2l (ENSDARG00000034211)	capn8 (ENSDARG00000055715)	capn2b (ENSDARG00000055592)	capn1b (ENSDARG00000052748)	mrps28 (ENSDARG00000041538)	sde2 (ENSDARG00000024124)	wdr83 (ENSDARG00000041600)	ENSDARG00000111946 #32	yju2b (ENSDARG00000041533)	c3b.1 (ENSDARG00000093068) #22	c3b.2 (ENSDARG00000001818) #22	PDGFA (ENSDARG00000109371)	pdgfaa (ENSDARG00000110069)	dnaja3b (ENSDARG00000102295)	vasna (ENSDARG00000099266)	ENSDARG00000106684	si:ch211-250e5.16 (ENSDARG00000116290)	si:dkeyp-98a7.9 (ENSDARG00000087584)	si:dkeyp-98a7.8 (ENSDARG00000094674)	ENSDARG00000088895	si:dkeyp-98a7.4 (ENSDARG00000096097)	ENSDARG00000107226	si:dkeyp-98a7.5 (ENSDARG00000089525)	si:dkeyp-98a7.3 (ENSDARG00000090929)	b3galt10.2 (ENSDARG00000061496)
Zebrafish	MODERN SPECIES	14	SRL (ENSDARG00000112959)	ENSDARG00000078388	b3galt10.1 (ENSDARG00000061432)	ENSDARG00000088591	ENSDARG00000114948	capn2l (ENSDARG00000034211)	capn8 (ENSDARG00000055715)	capn2b (ENSDARG00000055592)	capn1b (ENSDARG00000052748)	mrps28 (ENSDARG00000041538)	sde2 (ENSDARG00000024124)	wdr83 (ENSDARG00000041600)	ENSDARG00000111946 #32	yju2b (ENSDARG00000041533)	c3b.1 (ENSDARG00000093068) #22	c3b.2 (ENSDARG00000001818) #22	PDGFA (ENSDARG00000109371)	pdgfaa (ENSDARG00000110069)	dnaja3b (ENSDARG00000102295)	vasna (ENSDARG00000099266)	ENSDARG00000106684	si:ch211-250e5.16 (ENSDARG00000116290)	si:dkeyp-98a7.9 (ENSDARG00000087584)	si:dkeyp-98a7.8 (ENSDARG00000094674)	ENSDARG00000088895	si:dkeyp-98a7.4 (ENSDARG00000096097)	ENSDARG00000107226	si:dkeyp-98a7.5 (ENSDARG00000089525)	si:dkeyp-98a7.3 (ENSDARG00000090929)	b3galt10.2 (ENSDARG00000061496)	ENSDARG00000109569
Cyprinoidei	ANCESTRAL SPECIES	17	ENSGT00940000164876.b	ENSGT00940000163421.a.c.b	ENSGT00940000163421.a.c.a	ENSGT00940000154784.D.a.a.a	ENSGT00940000154784.D.b.c.a	ENSGT00940000154784.D.a.a.b.a.a	ENSGT00940000158672.d	ENSGT00390000001057	ENSGT00530000063402.b	ENSGT00940000159016	ENSGT00950000182993.B.b #32	ENSGT00530000063615.b.n	ENSGT00530000063615.b.m	ENSGT00940000154063.C.a.b.k #22	ENSGT00940000176087	ENSGT00940000154063.C.a.b.l #22	ENSGT00940000159039.b	ENSGT00940000155280.e	ENSGT00940000159318.n.b	ENSGT00940000158246	ENSGT00940000158015.k.b	ENSGT00390000001146	ENSGT00390000000549	ENSGT00390000009679	ENSGT01060000248591.a.a.a.b.b	ENSGT00940000161265.e.a.b	ENSGT00950000182951.A.a.b.a	ENSGT00990000204053	ENSGT00530000064273.a.b.p	ENSGT00530000064273.a.b.o.g	ENSGT00390000007688.a.a
Cyprininae	ANCESTRAL SPECIES	289	ENSGT00940000164876.b.e.a.b	ENSGT00940000163421.a.c.b.a.a	ENSGT00940000163421.a.c.a.a	ENSGT00940000154784.D.a.a.a.c	ENSGT00940000154784.D.b.c.a.l	ENSGT00940000154784.D.a.a.b.a.a.k	ENSGT00940000158672.d.b	ENSGT00530000063402.b.k	ENSGT00940000159016.l	ENSGT00530000063615.b.n.b	ENSGT00950000182993.B.b.n #32	ENSGT00530000063615.b.m	ENSGT00940000154063.C.a.b.k.b #22	ENSGT00940000159039.b.c.b	ENSGT00940000176087	ENSGT00940000154063.C.a.b.l #22	ENSGT00940000159039.b.c.a.b	ENSGT00940000155280.e.c	ENSGT00940000159318.n.b.b	ENSGT00940000164876.b.e.b	ENSGT00940000164876.b.f.b.b	ENSGT00940000158246.c.a	ENSGT00940000158015.k.b.d	ENSGT00390000001146.b	ENSGT00390000000549	ENSGT00390000009679	ENSGT01060000248591.a.a.a.b.b.b	ENSGT00940000161265.e.a.b.a
Cyprininae_a	ANCESTRAL SPECIES	164	ENSGT00940000163421.a.c.b.a.a	ENSGT00940000163421.a.c.a.a	ENSGT00940000154784.D.a.a.a.c	ENSGT00940000154784.D.b.c.a.l	ENSGT00940000154784.D.a.a.b.a.a.k	ENSGT00940000158672.d.b	ENSGT00390000001057.j	ENSGT00530000063402.b.k	ENSGT00940000159016.l	ENSGT00530000063615.b.n.b	ENSGT00950000182993.B.b.n #32	ENSGT00530000063615.b.m	ENSGT00940000154063.C.a.b.k.b #22	ENSGT00940000159039.b.c.b	ENSGT00940000176087	ENSGT00940000154063.C.a.b.l #22	ENSGT00940000159039.b.c.a.a	ENSGT00940000155280.e.c	ENSGT00940000159318.n.b.b	ENSGT00940000164876.b.e.a.a.a	ENSGT00940000164876.b.f.b.b	ENSGT00940000158246.c.a	ENSGT00940000158015.k.b.d	ENSGT00390000001146.b	ENSGT00390000009679.t	ENSGT01060000248591.a.a.a.b.b.a	ENSGT00940000161265.e.a.b.b	ENSGT00950000182951.A.a.b.a	ENSGT00990000204053
Golden-line barbel	MODERN SPECIES	984			ENSSGRG00000006680	ENSSGRG00000006682	ENSSGRG00000006684	capn2l (ENSSGRG00000006890)	ENSSGRG00000014095	capn2b (ENSSGRG00000014109)	capn1b (ENSSGRG00000015389)	mrps28 (ENSSGRG00000020453)	sde2 (ENSSGRG00000020454)	wdr83 (ENSSGRG00000020457)	yju2b (ENSSGRG00000020468)	ENSSGRG00000020555 #22	ENSSGRG00000020557	ENSSGRG00000020558 #22	ENSSGRG00000020562	dnaja3b (ENSSGRG00000020564)	ENSSGRG00000020566	vasna (ENSSGRG00000020568)
Goldfish	MODERN SPECIES	14	ENSCARG00000023054	CREBBP (ENSCARG00000021030)	ADCY9 (ENSCARG00000020968)	SRL (ENSCARG00000020959)	GLIS2 (ENSCARG00000020950)	ENSCARG00000020944	ENSCARG00000020941	ENSCARG00000020930	ENSCARG00000020927	capn2l (ENSCARG00000020670)	capn2b (ENSCARG00000019958)	capn1b (ENSCARG00000015708)	sde2 (ENSCARG00000015627)	PSPN (ENSCARG00000015623) #32	ENSCARG00000015609 #22	ENSCARG00000015597 #22	PDGFA (ENSCARG00000015589)	dnaja3b (ENSCARG00000015037)	vasna (ENSCARG00000015016)	ENSCARG00000015005	ENSCARG00000015001	ENSCARG00000014996	AARS2 (ENSCARG00000014934)	rrbp1b (ENSCARG00000014805)	kat14 (ENSCARG00000014667)	dzank1 (ENSCARG00000014647)	nptxrb (ENSCARG00000014637)	dnal4b (ENSCARG00000014630)	ENSCARG00000014593	ENSCARG00000014590	ENSCARG00000014567
Euteleosteomorpha	ANCESTRAL SPECIES	79	ENSGT00940000159737.c	ENSGT00940000159564	ENSGT00940000156772.b.c.a	ENSGT00940000162978.a.a.a	ENSGT01030000234638.b.a.a	ENSGT00530000063646.b	ENSGT00940000159327.u.b	ENSGT00940000166436	ENSGT00900000141021.b.b	ENSGT00940000156518.A	ENSGT00390000002121	ENSGT00940000159016	ENSGT00950000182993.B.b #32	ENSGT00530000063615.b	ENSGT00940000176087	ENSGT00940000154063.C.a.b #22	ENSGT00940000159039.b	ENSGT00940000155280.e	ENSGT00940000159318.n.b	ENSGT00940000163421.a.c	ENSGT00940000164876.b	ENSGT00940000158383.a	ENSGT00390000015189.e.b	ENSGT00940000157834.b	ENSGT00940000155577.g.a	ENSGT00940000155364.g.b	ENSGT00390000014091	ENSGT00940000160332.b	ENSGT00510000047820.k.b	ENSGT00390000000087	ENSGT00390000017673.a.a
Acanthomorphata	ANCESTRAL SPECIES	89	ENSGT00940000156054.c.b	ENSGT00940000159737.c	ENSGT00940000159564	ENSGT00940000162978.a.a.a	ENSGT01030000234638.b.a.a	ENSGT00530000063646.b	ENSGT00940000159327.u.b	ENSGT00940000166436	ENSGT00900000141021.b.b	ENSGT00940000156518.A	ENSGT00390000002121	ENSGT00940000159016	ENSGT00950000182993.B.b #32	ENSGT00940000155647.bb	ENSGT00530000063615.b	ENSGT00940000154063.C.a.b #22	ENSGT00940000176087
Cod	MODERN SPECIES	16	USP34 (ENSGMOG00000035113)	ENSGMOG00000026375	ENSGMOG00000019501	ENSGMOG00000019498	ENSGMOG00000019496	ier2b (ENSGMOG00000024743)	ENSGMOG00000028395	ENSGMOG00000031475	cacna1ab (ENSGMOG00000031994)	ENSGMOG00000036084	wdr83os (ENSGMOG00000016418)	wdr83 (ENSGMOG00000016428)	ENSGMOG00000025607 #32	ENSGMOG00000010259	yju2b (ENSGMOG00000010263)	c3b.2 (ENSGMOG00000010277) #22	ENSGMOG00000012450	helt (ENSGMOG00000012454)	ENSGMOG00000012457	cfap97 (ENSGMOG00000034004)	ufsp2 (ENSGMOG00000012462)	map9 (ENSGMOG00000024679)	gucy1a1 (ENSGMOG00000012469)	gucy1b1 (ENSGMOG00000012472)	fabp2 (ENSGMOG00000012474)	ENSGMOG00000030194	ENSGMOG00000012475	myoz2b (ENSGMOG00000028435)	ENSGMOG00000012480	ENSGMOG00000012478	DHX15 (ENSGMOG00000012481)
Euacanthomorphacea	ANCESTRAL SPECIES	47	ENSGT01000000214799.A.a	ENSGT00940000159737.c	ENSGT00940000159564	ENSGT00940000162978.a.a.a	ENSGT01030000234638.b.a.a	ENSGT00530000063646.b	ENSGT00940000159327.u.b	ENSGT00940000166436	ENSGT00900000141021.b.b	ENSGT00940000156518.A	ENSGT00390000002121	ENSGT00940000159016	ENSGT00950000182993.B.b #32	ENSGT00940000155647.bb	ENSGT00530000063615.b	ENSGT00940000154063.C.a.b #22	ENSGT00940000176087	ENSGT00940000161036.B.b	ENSGT00940000162476	ENSGT00390000007125.a	ENSGT01100000263540.B.c	ENSGT00940000157049.d	ENSGT00940000157556.a.a	ENSGT00950000183082.b.b.a.b	ENSGT00940000157525.a	ENSGT00530000063604.A	ENSGT00730000111173.h	ENSGT00940000162611.b	ENSGT00940000162611.a.a.a	ENSGT00940000157322.b.b	ENSGT00940000157331.b.a
Pinecone sodierfish	MODERN SPECIES		ELFN2 (ENSMMDG00005001422)	mfng (ENSMMDG00005001352)	ENSMMDG00005001330	man2b1 (ENSMMDG00005001007)	TRMT1 (ENSMMDG00005000728)	NACC1 (ENSMMDG00005000672)	stx10 (ENSMMDG00005000663)	ier2b (ENSMMDG00005000655)	ENSMMDG00005000653	cacna1ab (ENSMMDG00005000641)	wdr83os (ENSMMDG00005000630)	wdr83 (ENSMMDG00005000624)	PSPN (ENSMMDG00005000622) #32	gtf3aa (ENSMMDG00005000618)	yju2b (ENSMMDG00005000612)	c3b.2 (ENSMMDG00005000596) #22	ENSMMDG00005000586	ENSMMDG00005000584	ENSMMDG00005000581	ENSMMDG00005000578	ENSMMDG00005000571	ENSMMDG00005000566	atpv0e2 (ENSMMDG00005000559)	ENSMMDG00005000554	ENSMMDG00005000550	ENTPD7 (ENSMMDG00005000226)	slc25a28 (ENSMMDG00005000099)	ENSMMDG00005000092	GOT1 (ENSMMDG00005000079)	CNNM1 (ENSMMDG00005000075)	hoga1 (ENSMMDG00005000074)
Percomorphaceae	ANCESTRAL SPECIES	17	ENSGT01000000214799.A.a	ENSGT00940000159737.c	ENSGT00940000159564	ENSGT00940000162978.a.a.a	ENSGT01030000234638.b.a.a	ENSGT00530000063646.b	ENSGT00940000159327.u.b	ENSGT00940000166436	ENSGT00900000141021.b.b	ENSGT00940000156518.A	ENSGT00390000002121	ENSGT00940000159016	ENSGT00950000182993.B.b #32	ENSGT00940000155647.bb	ENSGT00530000063615.b	ENSGT00940000154063.C.a.b #22	ENSGT00940000176087	ENSGT00940000161036.B.b	ENSGT00940000162476	ENSGT00390000007125.a	ENSGT01100000263540.B.c	ENSGT00940000157049.d	ENSGT00940000157556.a.a	ENSGT00950000183082.b.b.a.b	ENSGT00940000157525.a	ENSGT00530000063604.A	ENSGT00730000111173.h	ENSGT00940000162611.b	ENSGT00940000162611.a.a.a	ENSGT00940000157322.b.b	ENSGT00940000157331.b.a
Tiger tail seahorse	MODERN SPECIES	518	ELFN2 (ENSHCOG00000009558)	mfng (ENSHCOG00000009535)	ENSHCOG00000009523	man2b1 (ENSHCOG00000009474)	TRMT1 (ENSHCOG00000009447)	NACC1 (ENSHCOG00000009409)	ENSHCOG00000009391	ENSHCOG00000009374	ENSHCOG00000009335	ier2b (ENSHCOG00000009318)	stx10 (ENSHCOG00000009302)	wdr83os (ENSHCOG00000009291)	wdr83 (ENSHCOG00000009279)	ENSHCOG00000009260	yju2b (ENSHCOG00000009176)	c3b.2 (ENSHCOG00000009152) #22	ENSHCOG00000009071	ARHGAP19 (ENSHCOG00000009054)	slit1b (ENSHCOG00000009025)	ENSHCOG00000008968	ENSHCOG00000008944	MORN4 (ENSHCOG00000008931)	hoga1 (ENSHCOG00000008912)	CNNM1 (ENSHCOG00000008889)	GOT1 (ENSHCOG00000008823)	NKX2-3 (ENSHCOG00000008804)	slc25a28 (ENSHCOG00000008780)	ENTPD7 (ENSHCOG00000008762)	ENSHCOG00000008711	atpv0e2 (ENSHCOG00000008699)	parn (ENSHCOG00000008683)
Percomorphaceae_B	ANCESTRAL SPECIES		ENSGT01000000214799.A.a	ENSGT00940000159737.c	ENSGT00940000159564	ENSGT00940000162978.a.a.a	ENSGT01030000234638.b.a.a	ENSGT00530000063646.b	ENSGT00940000159327.u.b	ENSGT00940000166436	ENSGT00900000141021.b.b.f	ENSGT00940000156518.A	ENSGT00390000002121	ENSGT00940000159016	ENSGT00950000182993.B.b #32	ENSGT00940000155647.bb	ENSGT00530000063615.b	ENSGT00940000154063.C.a.b #22	ENSGT01010000222294.c.b.b.a.a.a.a.a.b.b.b	ENSGT01010000222294.c.b.b.a.a.a.a.a.b.b.a.a.a.b	ENSGT00980000198884	ENSGT01010000222294.c.b.b.a.a.a.a.a.b.a	ENSGT01010000222294.c.b.b.a.a.a.a.a.a.a.a	ENSGT01010000222294.c.b.b.a.a.a.a.a.b.b.a.b.a.a	ENSGT01010000222294.c.b.b.a.a.a.a.a.b.b.a.b.a.b.b	ENSGT00990000203852	ENSGT00940000161036.B.b	ENSGT00940000162476	ENSGT00390000007125.a	ENSGT01100000263540.B.c	ENSGT00940000157049.d	ENSGT00940000157556.a.a	ENSGT00950000183082.b.b.a.b
Percomorphaceae_C	ANCESTRAL SPECIES	3	ENSGT01000000214799.A.a.a	ENSGT00940000159737.c	ENSGT00940000159564	ENSGT00940000162978.a.a.a	ENSGT01030000234638.b.a.a	ENSGT00530000063646.b	ENSGT00940000159327.u.b	ENSGT00940000166436	ENSGT00900000141021.b.b.f	ENSGT00940000156518.A	ENSGT00390000002121	ENSGT00940000159016	ENSGT00950000182993.B.b #32	ENSGT00940000155647.bb	ENSGT00530000063615.b	ENSGT00940000154063.C.a.b #22	ENSGT01010000222294.c.b.b.a.a.a.a.a.b.b.b	ENSGT01010000222294.c.b.b.a.a.a.a.a.b.b.a.a.a.b.l	ENSGT00980000198884	ENSGT01010000222294.c.b.b.a.a.a.a.a.b.a	ENSGT01010000222294.c.b.b.a.a.a.a.a.a.a.a	ENSGT01010000222294.c.b.b.a.a.a.a.a.b.b.a.b.a.a	ENSGT01010000222294.c.b.b.a.a.a.a.a.b.b.a.b.a.b.b	ENSGT01010000222294.c.b.b.a.a.a.a.a.b.b.a.a.a.a.a	ENSGT00990000203852	ENSGT01010000222294.c.b.b.a.a.a.a.a.a.a.b.b	ENSGT00940000161036.B.b	ENSGT00940000162476	ENSGT00390000007125.a	ENSGT01100000263540.B.c	ENSGT00940000157049.d
Eupercaria	ANCESTRAL SPECIES	2	ENSGT00940000156054.c.b	ENSGT00940000159737.c	ENSGT00940000159564	ENSGT00940000162978.a.a.a	ENSGT01030000234638.b.a.a	ENSGT00530000063646.b	ENSGT00940000159327.u.b	ENSGT00940000166436	ENSGT00900000141021.b.b.f	ENSGT00940000156518.A	ENSGT00390000002121	ENSGT00940000159016	ENSGT00950000182993.B.b #32	ENSGT00940000155647.bb	ENSGT00530000063615.b	ENSGT00940000154063.C.a.b #22	ENSGT00980000198884	ENSGT01010000222294.c.b.b.a.a.a.a.a.b.a	ENSGT01010000222294.c.b.b.a.a.a.a.a.a.a.a	ENSGT01010000222294.c.b.b.a.a.a.a.a.b.b.a.b.a.a	ENSGT01010000222294.c.b.b.a.a.a.a.a.b.b.a.b.a.b.b	ENSGT01010000222294.c.b.b.a.a.a.a.a.b.b.a.a.a.a.a	ENSGT00990000203852	ENSGT00940000161036.B.b	ENSGT00940000162476	ENSGT00390000007125.a	ENSGT01100000263540.B.c	ENSGT00940000157049.d	ENSGT00940000157556.a.a	ENSGT00950000183082.b.b.a.b	ENSGT00940000157525.a
Tetraodontidae	ANCESTRAL SPECIES	16	ENSGT00940000156054.c.b	ENSGT00940000159737.c	ENSGT00940000159564	ENSGT00940000162978.a.a.a	ENSGT01030000234638.b.a.a	ENSGT00530000063646.b	ENSGT00940000159327.u.b	ENSGT00940000166436	ENSGT00900000141021.b.b.f	ENSGT00940000156518.A.h	ENSGT00390000002121	ENSGT00940000159016	ENSGT00950000182993.B.b #32	ENSGT00940000155647.bb	ENSGT00530000063615.b	ENSGT00940000154063.C.a.b #22	ENSGT00530000067736	ENSGT00940000177040	ENSGT00390000002789	ENSGT00940000158966	ENSGT00940000153342.b	ENSGT00390000011529	ENSGT00940000156048.e.a.a.a.a	ENSGT00390000003512.r	ENSGT00530000063498.A	ENSGT00940000155557.jc.b	ENSGT00390000005535	ENSGT00390000018879	ENSGT00940000155246	ENSGT00390000012679	ENSGT00940000160776
Fugu	MODERN SPECIES	8	ENSTRUG00000019855	man2b1 (ENSTRUG00000010840)	TRMT1 (ENSTRUG00000010700)	nacc1 (ENSTRUG00000010562)	stx10 (ENSTRUG00000022498)	ier2b (ENSTRUG00000010441)	cacna1ab (ENSTRUG00000007330)	wdr83os (ENSTRUG00000031419)	wdr83 (ENSTRUG00000007148)	ENSTRUG00000007142 #32	gtf3aa (ENSTRUG00000007067)	yju2b (ENSTRUG00000027799)	ENSTRUG00000024796	ENSTRUG00000020941	ENSTRUG00000026918	c3b.2 (ENSTRUG00000003028) #22	ENSTRUG00000028278	ENSTRUG00000027656	ifngr1 (ENSTRUG00000027690)	ENSTRUG00000021637	ltv1 (ENSTRUG00000001989)	capn9 (ENSTRUG00000002630)	taf5l (ENSTRUG00000028964)	nup133 (ENSTRUG00000004787)	ENSTRUG00000030016	ENSTRUG00000029557	cdc6 (ENSTRUG00000030863)	WIPF2 (ENSTRUG00000006189)	ENSTRUG00000006299	zgc:77929 (ENSTRUG00000006304)	npepps (ENSTRUG00000006339)
Tetraodon	MODERN SPECIES	10	ENSTNIG00000018812	mfng (ENSTNIG00000018811)	ENSTNIG00000018810	man2b1 (ENSTNIG00000018809)	TRMT1 (ENSTNIG00000018808)	NACC1 (ENSTNIG00000018807)	ier2b (ENSTNIG00000011311)	cacna1ab (ENSTNIG00000011310)	wdr83os (ENSTNIG00000006311)	ENSTNIG00000000784	ENSTNIG00000006310	wdr83 (ENSTNIG00000006309)	PSPN (ENSTNIG00000000368) #32	ENSTNIG00000006308	yju2b (ENSTNIG00000006307)	c3b.2 (ENSTNIG00000006306) #22	ENSTNIG00000006305	ENSTNIG00000006304	ltv1 (ENSTNIG00000006303)	capn9 (ENSTNIG00000006302)	taf5l (ENSTNIG00000006301)	nup133 (ENSTNIG00000006300)	ACTA1 (ENSTNIG00000017237)	ENSTNIG00000006298	cdc6 (ENSTNIG00000006297)	WIPF2 (ENSTNIG00000006296)	ENSTNIG00000006295	npepps (ENSTNIG00000006294)	ENSTNIG00000000174	mrpl45 (ENSTNIG00000006293)	ENSTNIG00000006292
Eupecaria_A	ANCESTRAL SPECIES	3	ENSGT00940000156054.c.b	ENSGT00940000159737.c	ENSGT00940000159564	ENSGT00940000162978.a.a.a	ENSGT01030000234638.b.a.a	ENSGT00530000063646.b	ENSGT00940000159327.u.b	ENSGT00940000166436	ENSGT00900000141021.b.b.f	ENSGT00940000156518.A	ENSGT00390000002121	ENSGT00940000159016	ENSGT00950000182993.B.b #32	ENSGT00940000155647.bb	ENSGT00530000063615.b	ENSGT00940000154063.C.a.b #22	ENSGT00980000198884	ENSGT01010000222294.c.b.b.a.a.a.a.a.b.a	ENSGT01010000222294.c.b.b.a.a.a.a.a.a.a.a	ENSGT01010000222294.c.b.b.a.a.a.a.a.b.b.a.b.a.a	ENSGT01010000222294.c.b.b.a.a.a.a.a.b.b.a.b.a.b.b	ENSGT01010000222294.c.b.b.a.a.a.a.a.b.b.a.a.a.a.a	ENSGT00990000203852	ENSGT00940000161036.B.b	ENSGT00940000162476	ENSGT00390000007125.a	ENSGT01100000263540.B.c	ENSGT00940000157049.d	ENSGT00940000157556.a.a	ENSGT00950000183082.b.b.a.b	ENSGT00940000157525.a
Eupecaria_B	ANCESTRAL SPECIES	1	ENSGT00940000156054.c.b	ENSGT00940000159737.c	ENSGT00940000159564	ENSGT00940000162978.a.a.a	ENSGT01030000234638.b.a.a	ENSGT00530000063646.b	ENSGT00940000159327.u.b	ENSGT00940000166436	ENSGT00900000141021.b.b.f	ENSGT00940000156518.A	ENSGT00390000002121	ENSGT00940000159016	ENSGT00950000182993.B.b #32	ENSGT00940000155647.bb	ENSGT00530000063615.b	ENSGT00940000154063.C.a.b #22	ENSGT00980000198884	ENSGT01010000222294.c.b.b.a.a.a.a.a.b.a	ENSGT01010000222294.c.b.b.a.a.a.a.a.b.b.a.b.a.b.b.c.b	ENSGT01010000222294.c.b.b.a.a.a.a.a.b.b.a.a.a.a.a.f	ENSGT00990000203852	ENSGT00940000161036.B.b	ENSGT00940000162476	ENSGT00390000007125.a	ENSGT01100000263540.B.c	ENSGT00940000157049.d	ENSGT00940000157556.a.a	ENSGT00940000177979	ENSGT00950000183082.b.b.a.b	ENSGT00940000157525.a	ENSGT00530000063604.A
Eupecaria_C	ANCESTRAL SPECIES	14	ENSGT00940000156054.c.b	ENSGT00940000159737.c	ENSGT00940000159564	ENSGT00940000162978.a.a.a	ENSGT01030000234638.b.a.a	ENSGT00530000063646.b	ENSGT00940000159327.u.b	ENSGT00940000166436	ENSGT00900000141021.b.b.f	ENSGT00940000156518.A	ENSGT00390000002121	ENSGT00940000159016	ENSGT00950000182993.B.b #32	ENSGT00940000155647.bb	ENSGT00530000063615.b	ENSGT00940000154063.C.a.b #22	ENSGT01010000222294.c.b.b.a.a.a.a.a.b.b.a.b.b	ENSGT00990000203852	ENSGT00940000161036.B.b	ENSGT00940000162476	ENSGT00390000007125.a	ENSGT01100000263540.B.c	ENSGT00940000157049.d	ENSGT00940000157556.a.a	ENSGT00950000183082.b.b.a.b	ENSGT00940000157525.a	ENSGT00530000063604.A	ENSGT00730000111173.h	ENSGT00940000162611.a.a.a	ENSGT00940000157322.b.b	ENSGT00940000157331.b.a
Eupercaria_incertae_sedis	ANCESTRAL SPECIES	13	ENSGT00940000156054.c.b	ENSGT00940000159737.c	ENSGT00940000159564	ENSGT00940000162978.a.a.a	ENSGT01030000234638.b.a.a	ENSGT00530000063646.b	ENSGT00940000159327.u.b	ENSGT00940000166436	ENSGT00900000141021.b.b.f	ENSGT00940000156518.A	ENSGT00390000002121	ENSGT00940000159016	ENSGT00950000182993.B.b #32	ENSGT00940000155647.bb	ENSGT00530000063615.b	ENSGT00940000154063.C.a.b #22	ENSGT01010000222294.c.b.b.a.a.a.a.a.b.b.a.a.b.b	ENSGT01010000222294.c.b.b.a.a.a.a.a.b.b.a.a.b.a	ENSGT01010000222294.c.b.b.a.a.a.a.a.b.b.a.b.a.a	ENSGT00940000161036.B.b	ENSGT00940000162476	ENSGT00390000007125.a	ENSGT01100000263540.B.c	ENSGT00940000157049.d	ENSGT00940000157556.a.a	ENSGT00950000183082.b.b.a.b	ENSGT00940000157525.a	ENSGT00530000063604.A	ENSGT00730000111173.h	ENSGT00940000162611.a.a.a	ENSGT00940000157322.b.b
European seabass	MODERN SPECIES	20	ENSDLAG00005005355	ENSDLAG00005029573	ENSDLAG00005031499	ENSDLAG00005005408	man2b1 (ENSDLAG00005005466)	TRMT1 (ENSDLAG00005006821)	NACC1 (ENSDLAG00005031569)	stx10 (ENSDLAG00005007025)	ier2b (ENSDLAG00005027098)	cacna1ab (ENSDLAG00005007288)	wdr83os (ENSDLAG00005012960)	wdr83 (ENSDLAG00005012970)	ENSDLAG00005012988 #32	ENSDLAG00005012998	yju2b (ENSDLAG00005034427)	c3b.2 (ENSDLAG00005013047) #22	ENSDLAG00005033533	ENSDLAG00005018447	ENSDLAG00005003278	ENSDLAG00005013598	ENSDLAG00005015513	ENSDLAG00005002488	ARHGAP5 (ENSDLAG00005020630)	AKAP6 (ENSDLAG00005031789)	ENSDLAG00005027050	NPAS3 (ENSDLAG00005026335)	egln3 (ENSDLAG00005034789)	ENSDLAG00005029801	eapp (ENSDLAG00005029016)
Large yellow croaker	MODERN SPECIES	481	ELFN2 (ENSLCRG00005010214)	ENSLCRG00005010215	mfng (ENSLCRG00005010216)	ENSLCRG00005010217	man2b1 (ENSLCRG00005010237)	TRMT1 (ENSLCRG00005012609)	NACC1 (ENSLCRG00005012662)	stx10 (ENSLCRG00005012666)	ier2b (ENSLCRG00005012667)	cacna1ab (ENSLCRG00005012831)	wdr83os (ENSLCRG00005023104)	wdr83 (ENSLCRG00005023108)	PSPN (ENSLCRG00005023110) #32	ENSLCRG00005023111	yju2b (ENSLCRG00005023112)	c3b.2 (ENSLCRG00005023115) #22	ENSLCRG00005023117	ENSLCRG00005023121	ENSLCRG00005023123	ENSLCRG00005023127	ENSLCRG00005023129	ENSLCRG00005023133	ENSLCRG00005023134	ENSLCRG00005023137	atpv0e2 (ENSLCRG00005023138)	ENSLCRG00005023140	ENTPD7 (ENSLCRG00005023168)	slc25a28 (ENSLCRG00005023325)	ENSLCRG00005023326	GOT1 (ENSLCRG00005023329)	CNNM1 (ENSLCRG00005023342)
Gilthead seabream	MODERN SPECIES		ENSSAUG00010000072	ENSSAUG00010000073	ENSSAUG00010000075	ENSSAUG00010000078	ENSSAUG00010000079	ENSSAUG00010000080	ENSSAUG00010000081	ENSSAUG00010000082	ENSSAUG00010000083	ENSSAUG00010000084	ENSSAUG00010000085	wdr83os (ENSSAUG00010000086)	wdr83 (ENSSAUG00010000087)	gtf3aa (ENSSAUG00010000088)	yju2b (ENSSAUG00010000090)	c3b.2 (ENSSAUG00010000095) #22	cacna1ab (ENSSAUG00010000235)	ier2b (ENSSAUG00010000783)	stx10 (ENSSAUG00010000785)	NACC1 (ENSSAUG00010000787)	TRMT1 (ENSSAUG00010000818)	man2b1 (ENSSAUG00010001016)	ENSSAUG00010003258	mfng (ENSSAUG00010003263)	ELFN2 (ENSSAUG00010003268)	gtpbp1 (ENSSAUG00010003293)	lgals2b (ENSSAUG00010004737)	ENSSAUG00010004739	ADAP1 (ENSSAUG00010004751)	CACNA1I (ENSSAUG00010005213)	grap2b (ENSSAUG00010012798)
Perciformes	ANCESTRAL SPECIES	2	ENSGT00940000156054.c.b	ENSGT00940000159737.c	ENSGT00940000159564	ENSGT00940000162978.a.a.a	ENSGT01030000234638.b.a.a	ENSGT00530000063646.b	ENSGT00940000159327.u.b	ENSGT00940000166436	ENSGT00900000141021.b.b.f	ENSGT00940000156518.A	ENSGT00390000002121	ENSGT00940000159016	ENSGT00950000182993.B.b #32	ENSGT00940000155647.bb	ENSGT00530000063615.b	ENSGT00940000154063.C.a.b #22	ENSGT01010000222294.c.b.b.a.a.a.a.a.b.b.a.b.b	ENSGT01010000222294.c.b.b.a.a.a.a.a.a.a.a	ENSGT00940000161036.B.b	ENSGT00940000162476	ENSGT00390000007125.a	ENSGT01100000263540.B.c	ENSGT00940000157049.d	ENSGT00940000157556.a.a	ENSGT00940000177979	ENSGT00950000183082.b.b.a.b	ENSGT00940000157525.a	ENSGT00530000063604.A	ENSGT00940000168493	ENSGT00940000162611.b	ENSGT00940000162611.a.a.a
Cottioidei	ANCESTRAL SPECIES	115															ENSGT00940000176087	ENSGT00940000154063.C.a.b #22	ENSGT01010000222294.c.b.b.a.a.a.a.a.b.b.a.b.b	ENSGT01010000222294.c.b.b.a.a.a.a.a.a.a.a
Stickleback	DUPLICATION
Stickleback	DUPLICATION
Stickleback	DUPLICATION
Stickleback	MODERN SPECIES	4	hk1 (ENSGACG00000019782)	myom2a (ENSGACG00000019784)	lgsn (ENSGACG00000019786)	ptp4a1 (ENSGACG00000019788)	col9a1a (ENSGACG00000019798)	ENSGACG00000019807	mrpl4 (ENSGACG00000019808)	ENSGACG00000019809	ENSGACG00000019810	sp2 (ENSGACG00000019811)	ENSGACG00000019813	wdr83os (ENSGACG00000019815)	wdr83 (ENSGACG00000019818)	ENSGACG00000019821	yju2b (ENSGACG00000019822)	ENSGACG00000019826 #22	ENSGACG00000019841	atf4a (ENSGACG00000019842)	ENSGACG00000019846	baiap2l2b (ENSGACG00000019848)	ENSGACG00000019850	DNAL4 (ENSGACG00000019852)	cbx6a (ENSGACG00000019854)	pla2g6 (ENSGACG00000019856)	dnaja3b (ENSGACG00000019868)	vasna (ENSGACG00000019871)	ENSGACG00000019872	akap8l (ENSGACG00000019873)	LPAR2 (ENSGACG00000019874)	CAMSAP3 (ENSGACG00000019875)	ENSGACG00000019878
Stickleback	MODERN SPECIES	247																ENSGACG00000001736 #22	ENSGACG00000001742	ENSGACG00000001748 #22
Stickleback	MODERN SPECIES	264																ENSGACG00000000155 #22
Stickleback	MODERN SPECIES	247														ENSGACG00000001736 #22	ENSGACG00000001742	ENSGACG00000001748 #22
Lumpfish	MODERN SPECIES		ELFN2 (ENSCLMG00005010977)	ENSCLMG00005010975	ENSCLMG00005010974	man2b1 (ENSCLMG00005010422)	TRMT1 (ENSCLMG00005010396)	NACC1 (ENSCLMG00005010393)	stx10 (ENSCLMG00005010390)	ier2b (ENSCLMG00005010389)	cacna1ab (ENSCLMG00005010386)	wdr83os (ENSCLMG00005010384)	wdr83 (ENSCLMG00005010381)	PSPN (ENSCLMG00005010378) #32	gtf3aa (ENSCLMG00005010377)	yju2b (ENSCLMG00005010376)	ENSCLMG00005010375	c3b.2 (ENSCLMG00005010374) #22	ENSCLMG00005010373	ENSCLMG00005010372	ENSCLMG00005010371	ENSCLMG00005010370	ENSCLMG00005010367	ENSCLMG00005010363	ENSCLMG00005010360	atpv0e2 (ENSCLMG00005010358)	ENTPD7 (ENSCLMG00005009896)	SLC25A28 (ENSCLMG00005009893)	NKX2-3 (ENSCLMG00005009891)	ENSCLMG00005009890	GOT1 (ENSCLMG00005009878)	CNNM1 (ENSCLMG00005009877)	hoga1 (ENSCLMG00005009876)
Perciformes_a	ANCESTRAL SPECIES		ENSGT00940000156054.c.b	ENSGT00940000159737.c	ENSGT00940000159564	ENSGT00940000162978.a.a.a	ENSGT01030000234638.b.a.a	ENSGT00530000063646.b	ENSGT00940000159327.u.b	ENSGT00940000166436	ENSGT00900000141021.b.b.f	ENSGT00940000156518.A	ENSGT00390000002121	ENSGT00940000159016	ENSGT00950000182993.B.b #32	ENSGT00940000155647.bb	ENSGT00530000063615.b	ENSGT00940000154063.C.a.b #22	ENSGT00980000198884	ENSGT01010000222294.c.b.b.a.a.a.a.a.b.a	ENSGT01010000222294.c.b.b.a.a.a.a.a.b.b.a.b.a.b.b.d	ENSGT00940000161036.B.b	ENSGT00940000162476	ENSGT00390000007125.a	ENSGT01100000263540.B.c	ENSGT00940000157049.d	ENSGT00940000157556.a.a	ENSGT00950000183082.b.b.a.b	ENSGT00940000157525.a	ENSGT00530000063604.A	ENSGT00940000168493	ENSGT00940000162611.b	ENSGT00940000162611.a.a.a
Channel bull blenny	DUPLICATION
Channel bull blenny	MODERN SPECIES	275											MORN4 (ENSCGOG00000022305)	ENSCGOG00000022304	ENSCGOG00000022300	ARHGAP19 (ENSCGOG00000022294)	ENSCGOG00000022289	ENSCGOG00000022283 #22	ENSCGOG00000022281	ENSCGOG00000022280	ENSCGOG00000022278	ENSCGOG00000022276	ENSCGOG00000022272	dla (ENSCGOG00000022270)	ENSCGOG00000022267	hk1 (ENSCGOG00000018845)	myom2a (ENSCGOG00000018657)	ENSCGOG00000018644	lgsn (ENSCGOG00000018643)	ptp4a1 (ENSCGOG00000018609)	ENSCGOG00000018606	ENSCGOG00000018604	mrpl4 (ENSCGOG00000018602)
Channel bull blenny	MODERN SPECIES	149	ENSCGOG00000021204	man2b1 (ENSCGOG00000021207)	TRMT1 (ENSCGOG00000021263)	NACC1 (ENSCGOG00000021349)	stx10 (ENSCGOG00000021351)	ier2b (ENSCGOG00000021355)	cacna1ab (ENSCGOG00000021366)	wdr83os (ENSCGOG00000021418)	wdr83 (ENSCGOG00000021422)	PSPN (ENSCGOG00000021435) #32	ENSCGOG00000021436	yju2b (ENSCGOG00000021437)	PSPN (ENSCGOG00000021439) #32	gtf3aa (ENSCGOG00000021440)	yju2b (ENSCGOG00000021443)	ENSCGOG00000021446 #22	ENSCGOG00000021449	ENSCGOG00000021450	ENSCGOG00000021454	ENSCGOG00000021456	ENSCGOG00000021460	ENSCGOG00000021465	ENSCGOG00000021466	ENSCGOG00000021468	atpv0e2 (ENSCGOG00000021470)	ENSCGOG00000021472	ENTPD7 (ENSCGOG00000021480)	slc25a28 (ENSCGOG00000021645)	NKX2-3 (ENSCGOG00000021646)
Pike perch	MODERN SPECIES	387									ENSSLUG00000006376 #32	wdr83 (ENSSLUG00000006370)	wdr83os (ENSSLUG00000006352)	wdr83 (ENSSLUG00000006309)	PSPN (ENSSLUG00000006302) #32	gtf3aa (ENSSLUG00000006280)	yju2b (ENSSLUG00000006273)	c3b.2 (ENSSLUG00000006223) #22	ENSSLUG00000006215	ENSSLUG00000006207
Ballan wrasse	MODERN SPECIES	465													ENSLBEG00000013793	ENSLBEG00000013720	crb3b (ENSLBEG00000013699)	c3b.2 (ENSLBEG00000013581) #22	ENSLBEG00000013518	atpv0e2 (ENSLBEG00000013498)	ENSLBEG00000013442	ENTPD7 (ENSLBEG00000013358)	slc25a28 (ENSLBEG00000013312)	NKX2-3 (ENSLBEG00000013270)	GOT1 (ENSLBEG00000013202)	CNNM1 (ENSLBEG00000013164)	hoga1 (ENSLBEG00000013133)	MORN4 (ENSLBEG00000013102)
Percomorphaceae_D	ANCESTRAL SPECIES		ENSGT01000000214799.A.a.a	ENSGT00940000159737.c	ENSGT00940000159564	ENSGT00940000162978.a.a.a	ENSGT01030000234638.b.a.a	ENSGT00530000063646.b	ENSGT00940000159327.u.b	ENSGT00940000166436	ENSGT00900000141021.b.b.f	ENSGT00940000156518.A	ENSGT00390000002121	ENSGT00940000159016	ENSGT00950000182993.B.b #32	ENSGT00940000155647.bb	ENSGT00530000063615.b	ENSGT00940000154063.C.a.b #22	ENSGT01010000222294.c.b.b.a.a.a.a.a.b.b.b	ENSGT01010000222294.c.b.b.a.a.a.a.a.b.a	ENSGT01010000222294.c.b.b.a.a.a.a.a.a.a.a	ENSGT01010000222294.c.b.b.a.a.a.a.a.b.b.a.a.a.a.a	ENSGT00990000203852	ENSGT01010000222294.c.b.b.a.a.a.a.a.a.a.b.b	ENSGT00940000161036.B.b	ENSGT00940000162476	ENSGT00390000007125.a	ENSGT01100000263540.B.c	ENSGT00940000157049.d	ENSGT00940000157556.a.a	ENSGT00950000183082.b.b.a.b	ENSGT00940000157525.a	ENSGT00530000063604.A
Anabantaria	ANCESTRAL SPECIES	1	ENSGT00940000156054.c.b	ENSGT00940000159737.c	ENSGT00940000159564	ENSGT00940000162978.a.a.a	ENSGT01030000234638.b.a.a	ENSGT00530000063646.b	ENSGT00940000159327.u.b	ENSGT00940000166436	ENSGT00900000141021.b.b.f	ENSGT00940000156518.A	ENSGT00390000002121	ENSGT00940000159016	ENSGT00950000182993.B.b #32	ENSGT00940000155647.bb	ENSGT00530000063615.b	ENSGT00940000154063.C.a.b #22	ENSGT01010000222294.c.b.b.a.a.a.a.a.b.b.b	ENSGT01010000222294.c.b.b.a.a.a.a.a.a.a.a	ENSGT00940000162476	ENSGT00390000007125.a	ENSGT01100000263540.B.c	ENSGT00940000157049.d	ENSGT00940000157556.a.a	ENSGT00950000183082.b.b.a.b	ENSGT00940000157525.a	ENSGT00530000063604.A	ENSGT00730000111173.h	ENSGT00940000162611.b	ENSGT00940000162611.a.a.a	ENSGT00940000157322.b.b	ENSGT00940000157331.b.a
Anabantoidei	ANCESTRAL SPECIES		ENSGT00940000156054.c.b	ENSGT00940000159737.c	ENSGT00940000159564	ENSGT00940000162978.a.a.a	ENSGT01030000234638.b.a.a	ENSGT00530000063646.b	ENSGT00940000159327.u.b	ENSGT00940000166436	ENSGT00900000141021.b.b.f	ENSGT00940000156518.A	ENSGT00390000002121	ENSGT00940000159016	ENSGT00950000182993.B.b #32	ENSGT00940000155647.bb	ENSGT00530000063615.b	ENSGT00940000154063.C.a.b #22	ENSGT01010000222294.c.b.b.a.a.a.a.a.b.b.b	ENSGT00940000162476	ENSGT00390000007125.a	ENSGT01100000263540.B.c	ENSGT00940000157049.d	ENSGT00940000157556.a.a	ENSGT00950000183082.b.b.a.b	ENSGT00940000157525.a	ENSGT00530000063604.A	ENSGT00730000111173.h	ENSGT00940000162611.a.a.a	ENSGT00940000157322.b.b	ENSGT00940000157331.b.a	ENSGT00940000156644.e.a	ENSGT00940000159781.b
Climbing perch	MODERN SPECIES		ENSATEG00000002110	ENSATEG00000002079	ENSATEG00000002048	ENSATEG00000002042	man2b1 (ENSATEG00000001947)	TRMT1 (ENSATEG00000001872)	NACC1 (ENSATEG00000001835)	stx10 (ENSATEG00000027834)	ier2b (ENSATEG00000001746)	cacna1ab (ENSATEG00000001518)	wdr83os (ENSATEG00000001483)	wdr83 (ENSATEG00000001416)	ENSATEG00000001399 #32	ENSATEG00000028716	yju2b (ENSATEG00000001359)	c3b.2 (ENSATEG00000001192) #22	ENSATEG00000000373	ENSATEG00000000813	ENSATEG00000001149	ENSATEG00000000886	ENSATEG00000028517	ENSATEG00000028052	ENSATEG00000000864	ENSATEG00000000593	ENSATEG00000000712	ENSATEG00000026381	ENSATEG00000000562	ENSATEG00000026757	ENSATEG00000027337	ENSATEG00000000449	ENSATEG00000000393
Siamese fighting fish	MODERN SPECIES		lgalsla (ENSBSLG00000011193)	MAL (ENSBSLG00000011186)	pgap4 (ENSBSLG00000011183)	tpcn3 (ENSBSLG00000010506)	ENSBSLG00000010299	kcnh1b (ENSBSLG00000010163)	rcor3 (ENSBSLG00000009783)	ENSBSLG00000009736	ATL2 (ENSBSLG00000008275)	ENSBSLG00000008208	ENSBSLG00000008202	wdr83 (ENSBSLG00000008143)	ENSBSLG00000008135 #32	ENSBSLG00000008132	yju2b (ENSBSLG00000008118)	c3b.2 (ENSBSLG00000007904) #22	ENSBSLG00000007848	ENSBSLG00000007863	ENSBSLG00000007772	ENSBSLG00000007733	atpv0e2 (ENSBSLG00000007148)	ENSBSLG00000007135	ENTPD7 (ENSBSLG00000007064)	slc25a28 (ENSBSLG00000007054)	NKX2-3 (ENSBSLG00000007044)	GOT1 (ENSBSLG00000006808)	CNNM1 (ENSBSLG00000006707)	hoga1 (ENSBSLG00000006434)	MORN4 (ENSBSLG00000006339)	ENSBSLG00000006317	slit1b (ENSBSLG00000005052)
Zig-zag eel	MODERN SPECIES		ENSMAMG00000004504	ENSMAMG00000004472	ENSMAMG00000004458	ENSMAMG00000004451	man2b1 (ENSMAMG00000004409)	TRMT1 (ENSMAMG00000004357)	NACC1 (ENSMAMG00000004307)	stx10 (ENSMAMG00000004298)	ier2b (ENSMAMG00000004285)	cacna1ab (ENSMAMG00000003922)	wdr83os (ENSMAMG00000027784)	wdr83 (ENSMAMG00000003828)	ENSMAMG00000003813 #32	ENSMAMG00000003780	yju2b (ENSMAMG00000026679)	c3b.2 (ENSMAMG00000003627) #22	ENSMAMG00000002213	ENSMAMG00000003590	ENSMAMG00000024305	ENSMAMG00000027842	ENSMAMG00000003372	ENSMAMG00000003439	ENSMAMG00000025111	ENSMAMG00000003221	ENSMAMG00000003394	ENSMAMG00000003468	ENSMAMG00000026171	ENSMAMG00000003346	ENSMAMG00000026370	ENSMAMG00000003461	ENSMAMG00000003158
Carangaria	ANCESTRAL SPECIES		ENSGT01000000214799.A.a.a	ENSGT00940000159737.c	ENSGT00940000159564	ENSGT00940000162978.a.a.a	ENSGT01030000234638.b.a.a	ENSGT00530000063646.b	ENSGT00940000159327.u.b	ENSGT00940000166436	ENSGT00900000141021.b.b.f	ENSGT00940000156518.A	ENSGT00390000002121	ENSGT00940000159016	ENSGT00950000182993.B.b #32	ENSGT00940000155647.bb	ENSGT00530000063615.b	ENSGT00940000154063.C.a.b #22	ENSGT01010000222294.c.b.b.a.a.a.a.a.b.a	ENSGT01010000222294.c.b.b.a.a.a.a.a.a.a.a	ENSGT00990000203852	ENSGT00940000161036.B.b	ENSGT00940000162476	ENSGT00390000007125.a	ENSGT01100000263540.B.c	ENSGT00940000157049.d	ENSGT00940000157556.a.a	ENSGT00950000183082.b.b.a.b	ENSGT00940000157525.a	ENSGT00530000063604.A	ENSGT00730000111173.h	ENSGT00940000162611.b	ENSGT00940000162611.a.a.a
Carangaria_A	ANCESTRAL SPECIES	14	ENSGT00940000156054.c.b	ENSGT00940000159737.c	ENSGT00940000159564	ENSGT00940000162978.a.a.a	ENSGT01030000234638.b.a.a	ENSGT00530000063646.b	ENSGT00940000159327.u.b	ENSGT00940000166436	ENSGT00900000141021.b.b.f	ENSGT00940000156518.A	ENSGT00390000002121	ENSGT00940000159016	ENSGT00950000182993.B.b #32	ENSGT00940000155647.bb	ENSGT00530000063615.b	ENSGT00940000154063.C.a.b #22	ENSGT01010000222294.c.b.b.a.a.a.a.a.b.a	ENSGT01010000222294.c.b.b.a.a.a.a.a.a.a.a	ENSGT00990000203852	ENSGT00940000161036.B.b	ENSGT00940000162476	ENSGT00390000007125.a	ENSGT01100000263540.B.c	ENSGT00940000157049.d	ENSGT00940000157556.a.a	ENSGT00950000183082.b.b.a.b	ENSGT00940000157525.a	ENSGT00530000063604.A	ENSGT00730000111173.h	ENSGT00940000162611.b	ENSGT00940000162611.a.a.a
Seriola	ANCESTRAL SPECIES	18	ENSGT00940000156054.c.b	ENSGT00940000159737.c	ENSGT00940000159564	ENSGT00940000162978.a.a.a	ENSGT01030000234638.b.a.a	ENSGT00530000063646.b	ENSGT00940000159327.u.b	ENSGT00940000166436	ENSGT00900000141021.b.b.f	ENSGT00940000156518.A	ENSGT00390000002121	ENSGT00940000159016	ENSGT00950000182993.B.b #32	ENSGT00940000155647.bb	ENSGT00530000063615.b	ENSGT00940000154063.C.a.b #22	ENSGT00940000156644.e.a	ENSGT00940000159781.b	ENSGT00940000160859	ENSGT00950000182787.A.a	ENSGT00940000157057.e	ENSGT00940000157889.g.b	ENSGT00390000013639	ENSGT00940000154406	ENSGT00940000157935.a	ENSGT01010000222294.c.b.b.a.a.a.a.a.b.b.a.a.b.a	ENSGT01010000222294.c.b.b.a.a.a.a.a.b.b.a.a.b.b.c.a
Greater amberjack	MODERN SPECIES	156	mfng (ENSSDUG00000012632)	ENSSDUG00000012663	man2b1 (ENSSDUG00000012680)	TRMT1 (ENSSDUG00000012740)	NACC1 (ENSSDUG00000012772)	stx10 (ENSSDUG00000012816)	ier2b (ENSSDUG00000012837)	cacna1ab (ENSSDUG00000012867)	ENSSDUG00000013029	wdr83os (ENSSDUG00000013039)	wdr83 (ENSSDUG00000013063)	PSPN (ENSSDUG00000013102) #32	gtf3aa (ENSSDUG00000013111)	yju2b (ENSSDUG00000013120)	ENSSDUG00000013140	c3b.2 (ENSSDUG00000013225) #22	ENSSDUG00000013334	ENSSDUG00000013358	ENSSDUG00000013373	ENSSDUG00000013391	ENSSDUG00000013405	ENSSDUG00000013418	ENSSDUG00000013428	ENSSDUG00000013438	ENSSDUG00000013444	dla (ENSSDUG00000013455)	ENSSDUG00000013479	hk1 (ENSSDUG00000013507)	myom2a (ENSSDUG00000013571)	ENSSDUG00000013627	lgsn (ENSSDUG00000013633)
Yellowtail amberjack	MODERN SPECIES	3021		ENSSLDG00000018540	ENSSLDG00000018527	MORN4 (ENSSLDG00000018510)	hoga1 (ENSSLDG00000018500)	CNNM1 (ENSSLDG00000018489)	ENSSLDG00000018476	ENSSLDG00000018462	ENSSLDG00000018451	cacna1ab (ENSSLDG00000018378)	wdr83os (ENSSLDG00000018352)	wdr83 (ENSSLDG00000018324)	PSPN (ENSSLDG00000018308) #32	yju2b (ENSSLDG00000018279)	ENSSLDG00000018260	c3b.2 (ENSSLDG00000018187) #22	ENSSLDG00000018135	ENSSLDG00000018122	ENSSLDG00000018105	dla (ENSSLDG00000018075)	ENSSLDG00000018055	hk1 (ENSSLDG00000017985)	myom2a (ENSSLDG00000017896)	ENSSLDG00000017858	lgsn (ENSSLDG00000017831)	ptp4a1 (ENSSLDG00000017801)	col9a1a (ENSSLDG00000017752)	ENSSLDG00000017726	ENSSLDG00000017707	ENSSLDG00000017685	ENSSLDG00000017664
Barramundi perch	MODERN SPECIES	167		ELFN2 (ENSLCAG00010015763)	mfng (ENSLCAG00010015769)	ENSLCAG00010015779	man2b1 (ENSLCAG00010015815)	TRMT1 (ENSLCAG00010015913)	NACC1 (ENSLCAG00010015936)	stx10 (ENSLCAG00010015938)	ier2b (ENSLCAG00010015939)	cacna1ab (ENSLCAG00010016281)	wdr83os (ENSLCAG00010017354)	wdr83 (ENSLCAG00010017355)	PSPN (ENSLCAG00010017363) #32	gtf3aa (ENSLCAG00010017366)	yju2b (ENSLCAG00010017369)	c3b.2 (ENSLCAG00010017407) #22	ENSLCAG00010017505	ENSLCAG00010017524	ENSLCAG00010017537	ENSLCAG00010017543	ENSLCAG00010017553	ENSLCAG00010017571	ENSLCAG00010017594	atpv0e2 (ENSLCAG00010017603)	ENSLCAG00010017607	ENTPD7 (ENSLCAG00010017632)	slc25a28 (ENSLCAG00010017778)	NKX2-3 (ENSLCAG00010017780)	GOT1 (ENSLCAG00010017785)	CNNM1 (ENSLCAG00010017811)	hoga1 (ENSLCAG00010017823)
Pleuronectoidei	ANCESTRAL SPECIES	26	ENSGT01000000214799.A.a.a	ENSGT00940000159737.c	ENSGT00940000159564	ENSGT00940000162978.a.a.a	ENSGT01030000234638.b.a.a	ENSGT00530000063646.b	ENSGT00940000159327.u.b	ENSGT00940000166436	ENSGT00900000141021.b.b.f	ENSGT00940000156518.A	ENSGT00390000002121	ENSGT00940000159016	ENSGT00950000182993.B.b #32	ENSGT00940000155647.bb	ENSGT00530000063615.b	ENSGT00940000154063.C.a.b #22	ENSGT01010000222294.c.b.b.a.a.a.a.a.b.a	ENSGT00940000161036.B.b	ENSGT00940000162476	ENSGT00390000007125.a	ENSGT01100000263540.B.c	ENSGT00940000157049.d	ENSGT00940000157556.a.a	ENSGT00950000183082.b.b.a.b	ENSGT00940000157525.a	ENSGT00530000063604.A	ENSGT00730000111173.h	ENSGT00940000162611.b	ENSGT00940000162611.a.a.a	ENSGT00940000157322.b.b	ENSGT00940000157331.b.a
Turbot	MODERN SPECIES	20	ENSSMAG00000021141	ENSSMAG00000021139	ENSSMAG00000033428	ENSSMAG00000031851	man2b1 (ENSSMAG00000023618)	TRMT1 (ENSSMAG00000021136)	NACC1 (ENSSMAG00000021135)	stx10 (ENSSMAG00000021134)	ier2b (ENSSMAG00000021133)	cacna1ab (ENSSMAG00000021132)	wdr83os (ENSSMAG00000021131)	wdr83 (ENSSMAG00000021130)	ENSSMAG00000025695 #32	ENSSMAG00000021129	yju2b (ENSSMAG00000021128)	c3b.2 (ENSSMAG00000021126) #22	ENSSMAG00000035482	ENSSMAG00000033985	ENSSMAG00000021125	ENSSMAG00000021124	ENSSMAG00000021096	ENSSMAG00000037881	ENSSMAG00000021098	ENTPD7 (ENSSMAG00000021099)	SLC25A28 (ENSSMAG00000021100)	NKX2-3 (ENSSMAG00000021102)	GOT1 (ENSSMAG00000021101)	CNNM1 (ENSSMAG00000021103)	hoga1 (ENSSMAG00000035315)	ENSSMAG00000032297	ENSSMAG00000035022
Tongue sole	MODERN SPECIES	19	cct4 (ENSCSEG00000020729)	FAM161A (ENSCSEG00000020732)	USP34 (ENSCSEG00000020739)	lgalsla (ENSCSEG00000020747)	MAL (ENSCSEG00000020749)	pgap4 (ENSCSEG00000020753)	stx10 (ENSCSEG00000020756)	cyp2ad3 (ENSCSEG00000020762)	cyp2p7 (ENSCSEG00000020763)	ier2b (ENSCSEG00000020767)	cacna1ab (ENSCSEG00000020769)	wdr83os (ENSCSEG00000020788)	wdr83 (ENSCSEG00000020790)	ENSCSEG00000020795 #32	GTF3A (ENSCSEG00000020796)	c3b.2 (ENSCSEG00000020797) #22	ENSCSEG00000020803	ENSCSEG00000020807	atpv0e2 (ENSCSEG00000020814)	ENSCSEG00000020816	ENTPD7 (ENSCSEG00000020819)	slc25a28 (ENSCSEG00000020821)	NKX2-3 (ENSCSEG00000020822)	ENSCSEG00000020823	GOT1 (ENSCSEG00000020824)	ENSCSEG00000020826	CNNM1 (ENSCSEG00000020827)	hoga1 (ENSCSEG00000020828)	MORN4 (ENSCSEG00000020829)	ENSCSEG00000020830	ENSCSEG00000020831
Ovalentaria	ANCESTRAL SPECIES		ENSGT00940000156054.c.b	ENSGT00940000159737.c	ENSGT00940000159564	ENSGT00940000162978.a.a.a	ENSGT01030000234638.b.a.a	ENSGT00530000063646.b	ENSGT00940000159327.u.b	ENSGT00940000166436	ENSGT00900000141021.b.b.f	ENSGT00940000156518.A	ENSGT00390000002121	ENSGT00940000159016	ENSGT00950000182993.B.b #32	ENSGT00940000155647.bb	ENSGT00530000063615.b	ENSGT00940000154063.C.a.b #22	ENSGT01010000222294.c.b.b.a.a.a.a.a.b.b.b	ENSGT01010000222294.c.b.b.a.a.a.a.a.a.b	ENSGT01010000222294.c.b.b.a.a.a.a.a.a.a.b.b	ENSGT00940000161036.B.b	ENSGT00940000162476	ENSGT00390000007125.a	ENSGT01100000263540.B.c	ENSGT00940000157049.d	ENSGT00940000157556.a.a	ENSGT00950000183082.b.b.a.b	ENSGT00940000157525.a	ENSGT00530000063604.A	ENSGT00730000111173.h	ENSGT00940000162611.b	ENSGT00940000162611.a.a.a
Ovalentaria_B	ANCESTRAL SPECIES	4	ENSGT00940000156054.c.b	ENSGT00940000159737.c	ENSGT00940000159564	ENSGT00940000162978.a.a.a	ENSGT01030000234638.b.a.a	ENSGT00530000063646.b	ENSGT00940000159327.u.b	ENSGT00940000166436	ENSGT00900000141021.b.b.f	ENSGT00940000156518.A	ENSGT00390000002121	ENSGT00940000159016	ENSGT00950000182993.B.b #32	ENSGT00940000155647.bb	ENSGT00530000063615.b	ENSGT00940000154063.C.a.b #22	ENSGT01010000222294.c.b.b.a.a.a.a.a.b.b.b	ENSGT01010000222294.c.b.b.a.a.a.a.a.a.b	ENSGT01010000222294.c.b.b.a.a.a.a.a.a.a.b.b	ENSGT00940000161036.B.b	ENSGT00940000162476	ENSGT00390000007125.a	ENSGT01100000263540.B.c	ENSGT00940000157049.d	ENSGT00940000157556.a.a	ENSGT00950000183082.b.b.a.b	ENSGT00940000157525.a	ENSGT00530000063604.A	ENSGT00730000111173.h	ENSGT00940000162611.b	ENSGT00940000162611.a.a.a
Cichlidae	ANCESTRAL SPECIES	3	ENSGT00940000156054.c.b	ENSGT00940000159737.c	ENSGT00940000159564	ENSGT00940000162978.a.a.a	ENSGT01030000234638.b.a.a	ENSGT00530000063646.b	ENSGT00940000159327.u.b	ENSGT00940000166436	ENSGT00900000141021.b.b.f	ENSGT00940000156518.A	ENSGT00390000002121	ENSGT00940000159016	ENSGT00950000182993.B.b #32	ENSGT00940000155647.bb	ENSGT00530000063615.b	ENSGT00940000154063.C.a.b #22	ENSGT01010000222294.c.b.b.a.a.a.a.a.b.b.b	ENSGT01010000222294.c.b.b.a.a.a.a.a.a.b	ENSGT01010000222294.c.b.b.a.a.a.a.a.b.b.a.a.a.b	ENSGT01010000222294.c.b.b.a.a.a.a.a.b.a.a.a.a.b	ENSGT00980000198884	ENSGT01010000222294.c.b.b.a.a.a.a.a.b.a.a.a.a.a	ENSGT01010000222294.c.b.b.a.a.a.a.a.a.a.b.b	ENSGT00940000161036.B.b	ENSGT00940000162476	ENSGT00390000007125.a	ENSGT01100000263540.B.c	ENSGT00940000157049.d	ENSGT00940000157556.a.a	ENSGT00950000183082.b.b.a.b	ENSGT00940000157525.a
Pseudocrenilabrinae	ANCESTRAL SPECIES	3	ENSGT00940000156054.c.b	ENSGT00940000159737.c	ENSGT00940000159564	ENSGT00940000162978.a.a.a	ENSGT01030000234638.b.a.a	ENSGT00530000063646.b	ENSGT00940000159327.u.b	ENSGT00940000166436	ENSGT00900000141021.b.b.f	ENSGT00940000156518.A	ENSGT00390000002121	ENSGT00940000159016	ENSGT00950000182993.B.b #32	ENSGT00940000155647.bb	ENSGT00530000063615.b	ENSGT00940000154063.C.a.b #22	ENSGT01010000222294.c.b.b.a.a.a.a.a.b.b.b	ENSGT01010000222294.c.b.b.a.a.a.a.a.a.b.c	ENSGT01010000222294.c.b.b.a.a.a.a.a.b.b.a.a.a.b	ENSGT01010000222294.c.b.b.a.a.a.a.a.b.a.a.a.a.b	ENSGT00980000198884	ENSGT01010000222294.c.b.b.a.a.a.a.a.b.a.a.a.a.a.a	ENSGT00990000203852.a.a.b	ENSGT00990000203852.a.a.a	ENSGT01010000222294.c.b.b.a.a.a.a.a.a.a.b.b	ENSGT00940000161036.B.b	ENSGT00940000162476	ENSGT00390000007125.a	ENSGT01100000263540.B.c	ENSGT00940000157049.d	ENSGT00940000157556.a.a
Pseudocrenilabrinae_A	ANCESTRAL SPECIES	33	ENSGT00940000156054.c.b	ENSGT00940000159737.c	ENSGT00940000159564	ENSGT00940000162978.a.a.a	ENSGT01030000234638.b.a.a	ENSGT00530000063646.b	ENSGT00940000159327.u.b	ENSGT00940000166436	ENSGT00900000141021.b.b.f	ENSGT00940000156518.A	ENSGT00390000002121	ENSGT00940000159016	ENSGT00950000182993.B.b #32	ENSGT00940000155647.bb	ENSGT00530000063615.b	ENSGT00940000154063.C.a.b #22	ENSGT01010000222294.c.b.b.a.a.a.a.a.b.b.b	ENSGT01010000222294.c.b.b.a.a.a.a.a.a.b.c	ENSGT01010000222294.c.b.b.a.a.a.a.a.a.a.b.b	ENSGT00940000161036.B.b	ENSGT00940000162476	ENSGT00390000007125.a	ENSGT01100000263540.B.c	ENSGT00940000157049.d	ENSGT00940000157556.a.a	ENSGT00950000183082.b.b.a.b	ENSGT00940000157525.a	ENSGT00530000063604.A	ENSGT00730000111173.h	ENSGT00940000162611.b	ENSGT00940000162611.a.a.a
Haplochromini	ANCESTRAL SPECIES	45	ENSGT00940000156054.c.b	ENSGT00940000159737.c	ENSGT00940000159564	ENSGT00940000162978.a.a.a	ENSGT01030000234638.b.a.a	ENSGT00530000063646.b	ENSGT00940000159327.u.b	ENSGT00940000166436	ENSGT00900000141021.b.b.f	ENSGT00940000156518.A	ENSGT00390000002121	ENSGT00940000159016	ENSGT00950000182993.B.b #32	ENSGT00940000155647.bb	ENSGT00530000063615.b	ENSGT00940000154063.C.a.b #22	ENSGT01010000222294.c.b.b.a.a.a.a.a.b.b.b	ENSGT01010000222294.c.b.b.a.a.a.a.a.a.b.c	ENSGT01010000222294.c.b.b.a.a.a.a.a.a.a.b.b	ENSGT00940000161036.B.b	ENSGT00940000162476	ENSGT00390000007125.a	ENSGT01100000263540.B.c	ENSGT00940000157049.d	ENSGT00940000157556.a.a	ENSGT00950000183082.b.b.a.b	ENSGT00940000157525.a	ENSGT00530000063604.A	ENSGT00730000111173.h	ENSGT00940000162611.b	ENSGT00940000162611.a.a.a
Burton s mouthbrooder	MODERN SPECIES	763						TRMT1 (ENSHBUG00000008821)	NACC1 (ENSHBUG00000008896)	stx10 (ENSHBUG00000008907)	ier2b (ENSHBUG00000008930)	cacna1ab (ENSHBUG00000009065)	wdr83os (ENSHBUG00000009108)	wdr83 (ENSHBUG00000009141)	PSPN (ENSHBUG00000009161) #32	gtf3aa (ENSHBUG00000009181)	yju2b (ENSHBUG00000009192)	c3b.2 (ENSHBUG00000009316) #22
Haplochromini_A	ANCESTRAL SPECIES	50	ENSGT00940000156054.c.b	ENSGT00940000159737.c	ENSGT00940000159564	ENSGT00940000162978.a.a.a	ENSGT01030000234638.b.a.a	ENSGT00530000063646.b	ENSGT00940000159327.u.b	ENSGT00940000166436	ENSGT00900000141021.b.b.f	ENSGT00940000156518.A	ENSGT00390000002121	ENSGT00940000159016	ENSGT00950000182993.B.b #32	ENSGT00940000155647.bb	ENSGT00530000063615.b	ENSGT00940000154063.C.a.b #22	ENSGT01010000222294.c.b.b.a.a.a.a.a.b.b.b	ENSGT01010000222294.c.b.b.a.a.a.a.a.a.b.c	ENSGT01010000222294.c.b.b.a.a.a.a.a.a.a.b.b	ENSGT00940000161036.B.b	ENSGT00940000162476	ENSGT00390000007125.a	ENSGT01100000263540.B.c	ENSGT00940000157049.d	ENSGT00940000157556.a.a	ENSGT00950000183082.b.b.a.b	ENSGT00940000157525.a	ENSGT00530000063604.A	ENSGT00730000111173.h	ENSGT00940000162611.b	ENSGT00940000162611.a.a.a
Haplochromini_B	ANCESTRAL SPECIES	73	ENSGT00940000156054.c.b	ENSGT00940000159737.c	ENSGT00940000159564	ENSGT00940000162978.a.a.a	ENSGT01030000234638.b.a.a	ENSGT00530000063646.b	ENSGT00940000159327.u.b	ENSGT00940000166436	ENSGT00900000141021.b.b.f	ENSGT00940000156518.A	ENSGT00390000002121	ENSGT00940000159016	ENSGT00950000182993.B.b #32	ENSGT00940000155647.bb	ENSGT00530000063615.b	ENSGT00940000154063.C.a.b #22	ENSGT01010000222294.c.b.b.a.a.a.a.a.a.b.d.a
Eastern happy	MODERN SPECIES	18	ELFN2 (ENSACLG00000009621)	mfng (ENSACLG00000010000)	ENSACLG00000010013	ENSACLG00000010053	man2b1 (ENSACLG00000010057)	TRMT1 (ENSACLG00000010073)	NACC1 (ENSACLG00000010144)	stx10 (ENSACLG00000010440)	ier2b (ENSACLG00000010465)	cacna1ab (ENSACLG00000010494)	wdr83os (ENSACLG00000010662)	wdr83 (ENSACLG00000010671)	PSPN (ENSACLG00000010694) #32	gtf3aa (ENSACLG00000010768)	yju2b (ENSACLG00000010787)	c3b.2 (ENSACLG00000010814) #22	ENSACLG00000010942	ENSACLG00000010964	ENSACLG00000011058	mrpl4 (ENSACLG00000011069)	ENSACLG00000011090	ENSACLG00000011158	ptp4a1 (ENSACLG00000011171)	lgsn (ENSACLG00000011199)	ENSACLG00000011207	myom2a (ENSACLG00000011219)	hk1 (ENSACLG00000011311)	ENSACLG00000011491	dla (ENSACLG00000011496)	ENSACLG00000011506	ARHGAP19 (ENSACLG00000011516)
Zebra mbuna	MODERN SPECIES	1109	MORN4 (ENSMZEG00005014565)	ENSMZEG00005014560	slit1b (ENSMZEG00005014549)	ENSMZEG00005014534	man2b1 (ENSMZEG00005014523)	TRMT1 (ENSMZEG00005014510)	NACC1 (ENSMZEG00005014477)	stx10 (ENSMZEG00005014469)	ier2b (ENSMZEG00005014461)	cacna1ab (ENSMZEG00005014424)	wdr83os (ENSMZEG00005014409)	wdr83 (ENSMZEG00005014388)	PSPN (ENSMZEG00005014380) #32	gtf3aa (ENSMZEG00005014376)	yju2b (ENSMZEG00005014369)	c3b.2 (ENSMZEG00005014333) #22	ENSMZEG00005014308	ENSMZEG00005014291	ENSMZEG00005014278	mfng (ENSMZEG00005014259)	ELFN2 (ENSMZEG00005014247)	GTPBP1 (ENSMZEG00005014218)	lgals2b (ENSMZEG00005014206)	ENSMZEG00005014196	ADAP1 (ENSMZEG00005014184)	ENSMZEG00005014178	CACNA1I (ENSMZEG00005014133)	PDGFA (ENSMZEG00005014099)	dnaja3b (ENSMZEG00005014087)	vasna (ENSMZEG00005014080)	ENSMZEG00005014073
P. nyererei	MODERN SPECIES	622						TRMT1 (ENSPNYG00000013960)	NACC1 (ENSPNYG00000014183)	stx10 (ENSPNYG00000014325)	ier2b (ENSPNYG00000014506)	cacna1ab (ENSPNYG00000014713)	wdr83os (ENSPNYG00000015300)	wdr83 (ENSPNYG00000015358)	PSPN (ENSPNYG00000015462) #32	gtf3aa (ENSPNYG00000015512)	yju2b (ENSPNYG00000015576)	c3b.2 (ENSPNYG00000015706) #22	ENSPNYG00000016026
Lyretail cichlid	MODERN SPECIES	546					man2b1 (ENSNBRG00000024377)	TRMT1 (ENSNBRG00000024376)	NACC1 (ENSNBRG00000024375)	stx10 (ENSNBRG00000024374)	ier2b (ENSNBRG00000024373)	cacna1ab (ENSNBRG00000024372)	wdr83os (ENSNBRG00000024371)	wdr83 (ENSNBRG00000024370)	PSPN (ENSNBRG00000024369) #32	gtf3aa (ENSNBRG00000024368)	yju2b (ENSNBRG00000024367)	c3b.2 (ENSNBRG00000024366) #22
Nile tilapia	MODERN SPECIES	18	mfng (ENSONIG00000016908)	ENSONIG00000016903	ENSONIG00000041888	man2b1 (ENSONIG00000000405)	TRMT1 (ENSONIG00000000400)	ENSONIG00000042963	NACC1 (ENSONIG00000000399)	stx10 (ENSONIG00000033586)	ier2b (ENSONIG00000020702)	cacna1ab (ENSONIG00000000351)	wdr83os (ENSONIG00000029566)	wdr83 (ENSONIG00000000349)	PSPN (ENSONIG00000042618) #32	ENSONIG00000020701	ccdc130 (ENSONIG00000000344)	c3b.2 (ENSONIG00000000306) #22	ENSONIG00000030130	ENSONIG00000037685	ENSONIG00000031372	ENSONIG00000029502	ENSONIG00000028634	ENSONIG00000039371	ENSONIG00000035054	ENSONIG00000030986	ENSONIG00000037630	ENSONIG00000000302	ENSONIG00000000303	ENSONIG00000033317	ENSONIG00000000235	ENSONIG00000031038	ENSONIG00000027611
Pomacentridae	ANCESTRAL SPECIES	54	ENSGT00940000156054.c.b	ENSGT00940000159737.c	ENSGT00940000159564	ENSGT00940000162978.a.a.a	ENSGT01030000234638.b.a.a	ENSGT00530000063646.b	ENSGT00940000159327.u.b	ENSGT00940000166436	ENSGT00900000141021.b.b.f	ENSGT00940000156518.A	ENSGT00390000002121	ENSGT00940000159016	ENSGT00950000182993.B.b #32	ENSGT00940000155647.bb	ENSGT00530000063615.b	ENSGT00940000154063.C.a.b #22	ENSGT01010000222294.c.b.b.a.a.a.a.a.b.b.a.a.a.b
Pomacentridae_A	ANCESTRAL SPECIES	49	ENSGT00940000159737.c	ENSGT00960000187848	ENSGT00940000159564	ENSGT00940000162978.a.a.a	ENSGT01030000234638.b.a.a	ENSGT00530000063646.b	ENSGT00940000159327.u.b	ENSGT00940000166436	ENSGT00900000141021.b.b.f	ENSGT00940000156518.A	ENSGT00390000002121	ENSGT00940000159016	ENSGT00950000182993.B.b #32	ENSGT00940000155647.bb	ENSGT00530000063615.b	ENSGT00940000154063.C.a.b #22	ENSGT01010000222294.c.b.b.a.a.a.a.a.b.b.a.a.a.b
Amphiprion	ANCESTRAL SPECIES	241		ENSGT00960000187848	ENSGT00940000159564	ENSGT00940000162978.a.a.a	ENSGT01030000234638.b.a.a	ENSGT00530000063646.b	ENSGT00940000159327.u.b	ENSGT00940000166436	ENSGT00900000141021.b.b.f	ENSGT00940000156518.A	ENSGT00390000002121	ENSGT00940000159016	ENSGT00950000182993.B.b #32	ENSGT00940000155647.bb	ENSGT00530000063615.b	ENSGT00940000154063.C.a.b #22
Orange clownfish	MODERN SPECIES	17	ENSAPEG00000007887	mfng (ENSAPEG00000007849)	ENSAPEG00000007842	man2b1 (ENSAPEG00000007766)	TRMT1 (ENSAPEG00000007712)	NACC1 (ENSAPEG00000007665)	stx10 (ENSAPEG00000007626)	ier2b (ENSAPEG00000007610)	cacna1ab (ENSAPEG00000007445)	wdr83os (ENSAPEG00000007404)	wdr83 (ENSAPEG00000007363)	PSPN (ENSAPEG00000007353) #32	ENSAPEG00000007343	ENSAPEG00000007319	yju2b (ENSAPEG00000007303)	c3b.2 (ENSAPEG00000007130) #22
Clown anemonefish	MODERN SPECIES	827												wdr83os (ENSAOCG00000007941)	wdr83 (ENSAOCG00000007913)	PSPN (ENSAOCG00000007885) #32	yju2b (ENSAOCG00000007856)	c3b.2 (ENSAOCG00000000442) #22
Spiny chromis	MODERN SPECIES	2722																c3b.2 (ENSAPOG00000017066) #22	ENSAPOG00000016894
Bicolor damselfish	MODERN SPECIES	1670											wdr83os (ENSSPAG00000007193)	wdr83 (ENSSPAG00000007149)	PSPN (ENSSPAG00000007136) #32	gtf3aa (ENSSPAG00000007127)	yju2b (ENSSPAG00000007108)	c3b.2 (ENSSPAG00000007031) #22
Atherinomorphae	ANCESTRAL SPECIES	20	ENSGT00940000156054.c.b	ENSGT00940000159737.c	ENSGT00940000159564	ENSGT00940000162978.a.a.a	ENSGT01030000234638.b.a.a	ENSGT00530000063646.b	ENSGT00940000159327.u.b	ENSGT00940000166436	ENSGT00900000141021.b.b.f	ENSGT00940000156518.A	ENSGT00390000002121	ENSGT00940000159016	ENSGT00950000182993.B.b #32	ENSGT00940000155647.bb	ENSGT00530000063615.b	ENSGT00940000154063.C.a.b #22	ENSGT01010000222294.c.b.b.a.a.a.a.a.b.b.b	ENSGT01010000222294.c.b.b.a.a.a.a.a.a.b
Cyprinodontiformes	ANCESTRAL SPECIES	18	ENSGT00530000063410.a.q.b	ENSGT00940000167432	ENSGT01100000263601	ENSGT00940000155345.r	ENSGT00390000012029	ENSGT00940000163878	ENSGT00940000158659	ENSGT00940000153408.B.s.b	ENSGT00940000157824.i.a	ENSGT00550000074956	ENSGT00390000007529	ENSGT00940000166495	ENSGT00530000067736	ENSGT00940000177040	ENSGT00390000002789	ENSGT00940000154063.C.a.b #22	ENSGT01010000222294.c.b.b.a.a.a.a.a.b.b.b.d	ENSGT00940000162476	ENSGT00390000007125.a	ENSGT01100000263540.B.c	ENSGT00940000157049.d	ENSGT00940000157556.a.a	ENSGT00950000183082.b.b.a.b	ENSGT00940000157525.a	ENSGT00530000063604.A	ENSGT00730000111173.h	ENSGT00940000162611.b	ENSGT00940000162611.a.a.a	ENSGT00940000157322.b.b	ENSGT00940000157331.b.a	ENSGT00940000156644.e.a
Aplocheiloidei	ANCESTRAL SPECIES	17	ENSGT00940000156054.c.b	ENSGT00940000159737.c	ENSGT00940000159564	ENSGT00940000162978.a.a.a	ENSGT01030000234638.b.a.a	ENSGT00530000063646.b	ENSGT00940000159327.u.b	ENSGT00940000166436	ENSGT00900000141021.b.b.f	ENSGT00940000156518.A	ENSGT00390000002121	ENSGT00940000159016	ENSGT00950000182993.B.b #32	ENSGT00940000155647.bb	ENSGT00530000063615.b	ENSGT00940000154063.C.a.b #22	ENSGT01010000222294.c.b.b.a.a.a.a.a.b.b.a.b.b
Mangrove rivulus	MODERN SPECIES		ELFN2 (ENSKMAG00000011708)	mfng (ENSKMAG00000011740)	ENSKMAG00000011756	ENSKMAG00000011766	man2b1 (ENSKMAG00000011778)	TRMT1 (ENSKMAG00000011809)	NACC1 (ENSKMAG00000011852)	stx10 (ENSKMAG00000011870)	ier2b (ENSKMAG00000011906)	cacna1ab (ENSKMAG00000011960)	wdr83os (ENSKMAG00000012242)	wdr83 (ENSKMAG00000012255)	PSPN (ENSKMAG00000012294) #32	gtf3aa (ENSKMAG00000012317)	yju2b (ENSKMAG00000012338)	c3b.2 (ENSKMAG00000012405) #22	ENSKMAG00000012573
Turquoise killifish	MODERN SPECIES	1611	ENSNFUG00015001785	MFNG (ENSNFUG00015001801)	man2b1 (ENSNFUG00015001977)	TRMT1 (ENSNFUG00015002260)	NACC1 (ENSNFUG00015002320)	stx10 (ENSNFUG00015002325)	ier2b (ENSNFUG00015002333)	cacna1ab (ENSNFUG00015002454)	ENSNFUG00015002994	WDR83OS (ENSNFUG00015003001)	wdr83 (ENSNFUG00015003023)	PSPN (ENSNFUG00015003047) #32	GTF3AA (ENSNFUG00015003053)	CCDC130 (ENSNFUG00015003057)	ENSNFUG00015003060	c3b.2 (ENSNFUG00015003066) #22	ENSNFUG00015003089	SI (ENSNFUG00015003106)	ENSNFUG00015003108	ENSNFUG00015003111	ENSNFUG00015003114	ENSNFUG00015003115	ENSNFUG00015003118	ENSNFUG00015003123	ENSNFUG00015003127	ENSNFUG00015003136	ENSNFUG00015003141	ENSNFUG00015003146	ENSNFUG00015003153	ENSNFUG00015003155	ENSNFUG00015003167
Cyprinodontoidei	ANCESTRAL SPECIES	41	ENSGT00530000063410.a.q.b	ENSGT00940000167432	ENSGT01100000263601	ENSGT00940000155345.r	ENSGT00390000012029	ENSGT00940000163878	ENSGT00940000158659	ENSGT00940000153408.B.s.b	ENSGT00940000157824.i.a	ENSGT00550000074956	ENSGT00390000007529	ENSGT00940000166495	ENSGT00530000067736	ENSGT00940000177040	ENSGT00390000002789	ENSGT00940000154063.C.a.b #22	ENSGT01010000222294.c.b.b.a.a.a.a.a.b.b.b.d	ENSGT00940000162476	ENSGT00390000007125.a	ENSGT01100000263540.B.c	ENSGT00940000157049.d	ENSGT00940000157556.a.a	ENSGT00950000183082.b.b.a.b	ENSGT00940000157525.a	ENSGT00530000063604.A	ENSGT00730000111173.h	ENSGT00940000162611.b	ENSGT00940000162611.a.a.a	ENSGT00940000157322.b.b	ENSGT00940000157331.b.a	ENSGT00940000156644.e.a
Poeciliinae	ANCESTRAL SPECIES	27	ENSGT00940000162790.a.u.a	ENSGT00940000177865	ENSGT01050000244941.B.c.b.a	ENSGT00950000182975.a.b.a.b	ENSGT00940000163377.a.b.a	ENSGT00530000063646.b	ENSGT00940000159327.u.b	ENSGT00940000166436	ENSGT00900000141021.b.b.f	ENSGT00940000156518.A.k	ENSGT00390000002121	ENSGT00940000159016	ENSGT00950000182993.B.b #32	ENSGT00940000155647.bb	ENSGT00530000063615.b	ENSGT00940000154063.C.a.b #22	ENSGT01010000222294.c.b.b.a.a.a.a.a.b.b.b.d.a
Poecilia	ANCESTRAL SPECIES	31	ENSGT00940000162790.a.u.a	ENSGT00940000177865	ENSGT01050000244941.B.c.b.a	ENSGT00950000182975.a.b.a.b	ENSGT00940000163377.a.b.a	ENSGT00530000063646.b	ENSGT00940000159327.u.b	ENSGT00940000166436	ENSGT00900000141021.b.b.f	ENSGT00940000156518.A.k	ENSGT00390000002121	ENSGT00940000159016	ENSGT00950000182993.B.b #32	ENSGT00940000155647.bb	ENSGT00530000063615.b	ENSGT00940000154063.C.a.b #22	ENSGT01010000222294.c.b.b.a.a.a.a.a.b.b.b.d.a
NAME_6	ANCESTRAL SPECIES	223	ENSGT00940000162790.a.u.a	ENSGT00940000177865	ENSGT01050000244941.B.c.b.a	ENSGT00950000182975.a.b.a.b	ENSGT00940000163377.a.b.a	ENSGT00530000063646.b	ENSGT00940000159327.u.b	ENSGT00940000166436	ENSGT00900000141021.b.b.f	ENSGT00940000156518.A.k	ENSGT00390000002121	ENSGT00940000159016	ENSGT00950000182993.B.b #32	ENSGT00940000155647.bb	ENSGT00530000063615.b	ENSGT00940000154063.C.a.b #22	ENSGT01010000222294.c.b.b.a.a.a.a.a.b.b.b.d.a
Amazon molly	MODERN SPECIES	594	ENSPFOG00000008999	ENSPFOG00000023072	ENSPFOG00000008943	CAMSAP3 (ENSPFOG00000008785)	ENSPFOG00000008714	TRMT1 (ENSPFOG00000008527)	NACC1 (ENSPFOG00000008424)	stx10 (ENSPFOG00000008364)	ier2b (ENSPFOG00000020754)	cacna1ab (ENSPFOG00000006772)	wdr83os (ENSPFOG00000006478)	wdr83 (ENSPFOG00000006365)	PSPN (ENSPFOG00000024121) #32	gtf3aa (ENSPFOG00000020753)	yju2b (ENSPFOG00000006258)	c3b.2 (ENSPFOG00000005878) #22	ENSPFOG00000023902	ENSPFOG00000005801	ENSPFOG00000024321
Sailfin molly	MODERN SPECIES	1814											wdr83os (ENSPLAG00000014614)	wdr83 (ENSPLAG00000014647)	PSPN (ENSPLAG00000014658) #32	gtf3aa (ENSPLAG00000014681)	yju2b (ENSPLAG00000014689)	c3b.2 (ENSPLAG00000014776) #22	ENSPLAG00000014797
Guppy	MODERN SPECIES	439	akap8l (ENSPREG00000000206)	ENSPREG00000000207	ENSPREG00000000208	CAMSAP3 (ENSPREG00000000209)	ENSPREG00000000210	TRMT1 (ENSPREG00000000211)	NACC1 (ENSPREG00000000212)	stx10 (ENSPREG00000000213)	ier2b (ENSPREG00000000214)	ENSPREG00000000215	ENSPREG00000000216	wdr83 (ENSPREG00000000217)	wdr83os (ENSPREG00000000218)	PSPN (ENSPREG00000000219) #32	gtf3aa (ENSPREG00000000220)	c3b.2 (ENSPREG00000000221) #22	ENSPREG00000000222	ENSPREG00000000223	ENSPREG00000000224	ENSPREG00000000225	ENSPREG00000000226	ENSPREG00000000227	ENSPREG00000000228	ENSPREG00000000229	ENSPREG00000000230	ENSPREG00000000231	ENSPREG00000000232	ENSPREG00000000233	SMURF2 (ENSPREG00000000234)	ENSPREG00000000235	C17orf58 (ENSPREG00000000236)
Platyfish	MODERN SPECIES	19	ENSXMAG00000013838	ENSXMAG00000025096	ENSXMAG00000027351	CAMSAP3 (ENSXMAG00000013831)	ENSXMAG00000013830	TRMT1 (ENSXMAG00000013823)	NACC1 (ENSXMAG00000013817)	stx10 (ENSXMAG00000013808)	ier2b (ENSXMAG00000019747)	cacna1ab (ENSXMAG00000013771)	wdr83os (ENSXMAG00000013770)	wdr83 (ENSXMAG00000013765)	PSPN (ENSXMAG00000027335) #32	gtf3aa (ENSXMAG00000013763)	yju2b (ENSXMAG00000024353)	c3b.2 (ENSXMAG00000013660) #22	ENSXMAG00000025206	ENSXMAG00000029058	ENSXMAG00000011109	ENSXMAG00000025247	ENSXMAG00000021285	ENSXMAG00000021666	ENSXMAG00000019649	ENSXMAG00000025377	ENSXMAG00000021179	ENSXMAG00000021492	ENSXMAG00000011104	ENSXMAG00000019640	ENSXMAG00000022126	ENSXMAG00000025784	ENSXMAG00000025646
NAME_4	ANCESTRAL SPECIES	69	ENSGT00940000156054.c.b	ENSGT00940000159737.c	ENSGT00940000159564	ENSGT00940000162978.a.a.a	ENSGT01030000234638.b.a.a	ENSGT00530000063646.b	ENSGT00940000159327.u.b	ENSGT00940000166436	ENSGT00900000141021.b.b.f	ENSGT00940000156518.A	ENSGT00390000002121	ENSGT00940000159016	ENSGT00950000182993.B.b #32	ENSGT00940000155647.bb	ENSGT00530000063615.b	ENSGT00940000154063.C.a.b #22
Sheepshead minnow	MODERN SPECIES	1258										ENSCVAG00000012360	wdr83os (ENSCVAG00000012348)	wdr83 (ENSCVAG00000012328)	PSPN (ENSCVAG00000012297) #32	ENSCVAG00000000320	yju2b (ENSCVAG00000012262)	c3b.2 (ENSCVAG00000012256) #22
Oryzias	ANCESTRAL SPECIES	15	ENSGT00940000156054.c.b	ENSGT00940000159737.c	ENSGT00940000159564	ENSGT00940000162978.a.a.a	ENSGT01030000234638.b.a.a	ENSGT00530000063646.b	ENSGT00940000159327.u.b	ENSGT00940000166436	ENSGT00900000141021.b.b.f	ENSGT00940000156518.A	ENSGT00390000002121	ENSGT00940000159016	ENSGT00950000182993.B.b #32	ENSGT00940000155647.bb	ENSGT00530000063615.b	ENSGT00940000154063.C.a.b #22	ENSGT01020000230338.a.b.b.a.a.b.a.b.b.a.d
Oryzias_b	ANCESTRAL SPECIES	21	ENSGT00940000156054.c.b	ENSGT00940000159737.c	ENSGT00940000159564	ENSGT00940000162978.a.a.a	ENSGT01030000234638.b.a.a	ENSGT00530000063646.b	ENSGT00940000159327.u.b	ENSGT00940000166436	ENSGT00900000141021.b.b.f	ENSGT00940000156518.A	ENSGT00390000002121	ENSGT00940000159016	ENSGT00950000182993.B.b #32	ENSGT00940000155647.bb	ENSGT00530000063615.b	ENSGT00940000154063.C.a.b #22	ENSGT01020000230338.a.b.b.a.a.b.a.b.b.a.d
Indian medaka	MODERN SPECIES	681			mfng (ENSOMEG00000019203)	ENSOMEG00000019228	man2b1 (ENSOMEG00000019291)	TRMT1 (ENSOMEG00000019343)	NACC1 (ENSOMEG00000019378)	ENSOMEG00000019392	ier2b (ENSOMEG00000019405)	cacna1ab (ENSOMEG00000019550)	wdr83os (ENSOMEG00000019621)	wdr83 (ENSOMEG00000019647)	ENSOMEG00000019657 #32	ENSOMEG00000019677	yju2b (ENSOMEG00000019703)	c3b.2 (ENSOMEG00000019768) #22	ENSOMEG00000019790
Javanese ricefish	MODERN SPECIES		GTPBP1 (ENSOJAG00000002815)	ELFN2 (ENSOJAG00000002920)	mfng (ENSOJAG00000002926)	ENSOJAG00000002942	man2b1 (ENSOJAG00000002972)	TRMT1 (ENSOJAG00000003400)	NACC1 (ENSOJAG00000003472)	stx10 (ENSOJAG00000003490)	ier2b (ENSOJAG00000003501)	cacna1ab (ENSOJAG00000004472)	wdr83os (ENSOJAG00000011082)	wdr83 (ENSOJAG00000011130)	PSPN (ENSOJAG00000011184) #32	ENSOJAG00000011206	yju2b (ENSOJAG00000011228)	c3b.2 (ENSOJAG00000011284) #22	ENSOJAG00000011472	ENSOJAG00000011496	ttyh3b (ENSOJAG00000011786)	ENSOJAG00000011852	ENSOJAG00000011861	PLK1 (ENSOJAG00000011874)	rdh8b (ENSOJAG00000011956)	OLFM2 (ENSOJAG00000014220)	MFAP4 (ENSOJAG00000014225)	TRIP10 (ENSOJAG00000014238) #20	ENSOJAG00000014365 #19	VAV1 (ENSOJAG00000014407) #18	UBL5 (ENSOJAG00000014456)	pin1 (ENSOJAG00000014472)	ENSOJAG00000014496
Oryzias_a	ANCESTRAL SPECIES	26	ENSGT00940000155025.B.i	ENSGT00940000159737.c	ENSGT00940000159564	ENSGT00940000162978.a.a.a	ENSGT01030000234638.b.a.a	ENSGT00530000063646.b	ENSGT00940000159327.u.b	ENSGT00940000166436	ENSGT00900000141021.b.b.f	ENSGT00940000156518.A	ENSGT00390000002121	ENSGT00940000159016	ENSGT00950000182993.B.b #32	ENSGT00940000155647.bb	ENSGT00530000063615.b	ENSGT00940000154063.C.a.b #22	ENSGT01020000230338.a.b.b.a.a.b.a.b.b.a.d
Japanese Medaka HdrR	MODERN SPECIES		ENSORLG00000018919	mfng (ENSORLG00000030261)	ENSORLG00000027537	man2b1 (ENSORLG00000027580)	TRMT1 (ENSORLG00000020074)	ENSORLG00000023193	NACC1 (ENSORLG00000022177)	stx10 (ENSORLG00000020078)	ier2b (ENSORLG00000020082)	cacna1ab (ENSORLG00000025805)	wdr83os (ENSORLG00000024207)	wdr83 (ENSORLG00000020088)	PSPN (ENSORLG00000020090) #32	gtf3aa (ENSORLG00000022686)	yju2b (ENSORLG00000020092)	c3b.2 (ENSORLG00000020102) #22	ENSORLG00000029164	ENSORLG00000026295	rtn4rl2a (ENSORLG00000024828)	ENSORLG00000010889	unc93b1 (ENSORLG00000010912)	timm10 (ENSORLG00000024774)	ENSORLG00000010944	ENSORLG00000010947	fbxo8 (ENSORLG00000010964)	hand2 (ENSORLG00000026925)	ddt (ENSORLG00000010973)	galnt7 (ENSORLG00000011016)	spcs3 (ENSORLG00000011044)	ENSORLG00000011028	kdm2aa (ENSORLG00000011075)
Chinese medaka	DUPLICATION
Chinese medaka	MODERN SPECIES	413															ENSOSIG00000000176	ENSOSIG00000000186 #22	ENSOSIG00000000193
Chinese medaka	MODERN SPECIES	987							stx10 (ENSOSIG00000020702)	ier2b (ENSOSIG00000020698)	cacna1ab (ENSOSIG00000011669)	ENSOSIG00000011557	wdr83os (ENSOSIG00000011554)	wdr83 (ENSOSIG00000011549)	PSPN (ENSOSIG00000011546) #32	gtf3aa (ENSOSIG00000011544)	yju2b (ENSOSIG00000011539)	c3b.2 (ENSOSIG00000011529) #22	ENSOSIG00000011526
Protacanthopterygii	ANCESTRAL SPECIES	59	ENSGT00940000156054.c.a.b	ENSGT00940000159737.c	ENSGT00940000159564	ENSGT00940000156772.b.c.a	ENSGT00940000162978.a.a.a	ENSGT01030000234638.b.a.a	ENSGT00530000063646.b	ENSGT00940000159327.u.b	ENSGT00940000166436	ENSGT00900000141021.b.b	ENSGT00940000156518.A	ENSGT00390000002121	ENSGT00940000159016	ENSGT00950000182993.B.b #32	ENSGT00530000063615.b	ENSGT00940000154063.C.a.b #22	ENSGT00940000159039.b	ENSGT00940000155280.e	ENSGT00940000159318.n.b	ENSGT00940000163421.a.c.o	ENSGT00940000164876.b	ENSGT00940000158383.a	ENSGT00390000015189.e.b	ENSGT00940000157834.b	ENSGT00940000155577.g.a	ENSGT00940000155364.g.b	ENSGT00390000014091	ENSGT00940000160332.b	ENSGT00510000047820.k.b	ENSGT00390000000087	ENSGT00550000074885.l
Northern pike	MODERN SPECIES	8	atpv0e2 (ENSELUG00000021480)	ENSELUG00000000939	ENTPD7 (ENSELUG00000021567)	slc25a28 (ENSELUG00000021605)	NKX2-3 (ENSELUG00000021612)	man2b1 (ENSELUG00000021635)	TRMT1 (ENSELUG00000021659)	NACC1 (ENSELUG00000021684)	stx10 (ENSELUG00000021732)	ier2b (ENSELUG00000021759)	cacna1ab (ENSELUG00000021861)	wdr83os (ENSELUG00000021892)	wdr83 (ENSELUG00000021938)	ENSELUG00000021948 #32	yju2b (ENSELUG00000021972)	c3b.2 (ENSELUG00000022085) #22	pdgfaa (ENSELUG00000022158)	dnaja3b (ENSELUG00000022179)	vasna (ENSELUG00000022191)	ENSELUG00000001555	b3galt10.2 (ENSELUG00000022208)	GLIS2 (ENSELUG00000024872)	TFAP4 (ENSELUG00000001625)	SRL (ENSELUG00000022266)	ADCY9 (ENSELUG00000022280)	CREBBP (ENSELUG00000022478)	ENSELUG00000022524	mcrip2 (ENSELUG00000022545)	gde1 (ENSELUG00000022553)	tmem186 (ENSELUG00000022564)	cxcl12b (ENSELUG00000022602)
Salmoninae	ANCESTRAL SPECIES	14	ENSGT00940000159564	ENSGT00940000156772.b.c.a	ENSGT00940000162978.a.a.a	ENSGT01030000234638.b.a.a	ENSGT00530000063646.b	ENSGT00940000159327.u.b	ENSGT00940000166436.g	ENSGT00900000141021.b.b	ENSGT00940000156518.A.n	ENSGT00390000002121.d.a	ENSGT00940000156518.A.m.a	ENSGT00390000002121.d.b	ENSGT00940000159016	ENSGT00950000182993.B.b #32	ENSGT00530000063615.b	ENSGT00940000154063.C.a.b #22	ENSGT00940000159039.b.g.b	ENSGT00940000180264	ENSGT00940000159039.b.h	ENSGT00940000155280.e	ENSGT00940000159318.n.b	ENSGT00940000163421.a.c.o	ENSGT00940000164876.b	ENSGT00940000158383.a.a	ENSGT00390000015189.e.b.c	ENSGT00940000157834.b	ENSGT00940000155577.g.a.g.a	ENSGT00940000155364.g.b	ENSGT00390000014091.m.a	ENSGT00940000160332.b.e	ENSGT00510000047820.k.b
Huchen	DUPLICATION
Huchen	MODERN SPECIES	404					ENSHHUG00000006140	ENSHHUG00000006126	ENSHHUG00000006098	cbln12 (ENSHHUG00000006062)	ENSHHUG00000006057	chd8 (ENSHHUG00000005721)	ENSHHUG00000005710	ENSHHUG00000005703	casq1a (ENSHHUG00000005588)	ENSHHUG00000005497	ENSHHUG00000005489	ENSHHUG00000005480 #22	zgc:55733 (ENSHHUG00000005447)	apol1 (ENSHHUG00000005431)	zgc:66427 (ENSHHUG00000005420)	ENSHHUG00000005399	parp2 (ENSHHUG00000005383)	ENSHHUG00000005340	sdr39u1 (ENSHHUG00000005318)	ltb4r2b (ENSHHUG00000005305)	NFATC4 (ENSHHUG00000005300)	ENSHHUG00000005294	MYADM (ENSHHUG00000005289)	pex19 (ENSHHUG00000005283)	copa (ENSHHUG00000005207)	NCSTN (ENSHHUG00000005128)	VANGL2 (ENSHHUG00000005091)
Huchen	DUPLICATION
Huchen	DUPLICATION
Huchen	MODERN SPECIES	2221											wdr83os (ENSHHUG00000035612)	wdr83 (ENSHHUG00000035621)	PSPN (ENSHHUG00000035658) #32	yju2b (ENSHHUG00000035663)	ENSHHUG00000035682 #22	ENSHHUG00000035689 #22	PDGFA (ENSHHUG00000035706)	ENSHHUG00000035715	dnaja3b (ENSHHUG00000035717)
Huchen	MODERN SPECIES	2221												wdr83os (ENSHHUG00000035612)	wdr83 (ENSHHUG00000035621)	PSPN (ENSHHUG00000035658) #32	yju2b (ENSHHUG00000035663)	ENSHHUG00000035682 #22	ENSHHUG00000035689 #22	PDGFA (ENSHHUG00000035706)	ENSHHUG00000035715	dnaja3b (ENSHHUG00000035717)
Huchen	DUPLICATION
Huchen	MODERN SPECIES	740											wdr83os (ENSHHUG00000023460)	wdr83 (ENSHHUG00000023469)	ENSHHUG00000023499 #32	yju2b (ENSHHUG00000023502)	ENSHHUG00000023519 #22	ENSHHUG00000023526 #22	PDGFA (ENSHHUG00000023542)	ENSHHUG00000023559	dhx38 (ENSHHUG00000023601)	cyb5b (ENSHHUG00000023790)	zgc:162592 (ENSHHUG00000023809)	CPNE7 (ENSHHUG00000023813)	rpl13 (ENSHHUG00000023898)	gcshb (ENSHHUG00000023921)	kars1 (ENSHHUG00000023926)	ENSHHUG00000023976	ENSHHUG00000024003	psmd7 (ENSHHUG00000024006)	ENSHHUG00000024036	ENSHHUG00000024038	ENSHHUG00000024039
Huchen	MODERN SPECIES	740												wdr83os (ENSHHUG00000023460)	wdr83 (ENSHHUG00000023469)	ENSHHUG00000023499 #32	yju2b (ENSHHUG00000023502)	ENSHHUG00000023519 #22	ENSHHUG00000023526 #22	PDGFA (ENSHHUG00000023542)	ENSHHUG00000023559	dhx38 (ENSHHUG00000023601)	cyb5b (ENSHHUG00000023790)	zgc:162592 (ENSHHUG00000023809)	CPNE7 (ENSHHUG00000023813)	rpl13 (ENSHHUG00000023898)	gcshb (ENSHHUG00000023921)	kars1 (ENSHHUG00000023926)	ENSHHUG00000023976	ENSHHUG00000024003	psmd7 (ENSHHUG00000024006)	ENSHHUG00000024036	ENSHHUG00000024038
Salmoninae_a	ANCESTRAL SPECIES	33	ENSGT00940000159564.g.b	ENSGT00940000156772.b.c.a	ENSGT00940000159737.c.f	ENSGT00940000159564.h	ENSGT00940000162978.a.a.a	ENSGT01030000234638.b.a.a	ENSGT00530000063646.b	ENSGT00940000159327.u.b	ENSGT00940000166436.g	ENSGT00900000141021.b.b	ENSGT00940000156518.A.m.a	ENSGT00390000002121.d.b.b	ENSGT00940000159016	ENSGT00950000182993.B.b #32	ENSGT00530000063615.b	ENSGT00940000154063.C.a.b #22	ENSGT00940000159039.b.g.b	ENSGT00940000180264	ENSGT00940000159039.b.h	ENSGT00940000155280.e	ENSGT00940000159318.n.b	ENSGT00940000163421.a.c.o	ENSGT00940000164876.b	ENSGT00940000158383.a.a	ENSGT00390000015189.e.b.d	ENSGT00940000157834.b	ENSGT00940000155577.g.a.h	ENSGT00940000155364.g.b.e	ENSGT00390000014091.m.a	ENSGT00940000160332.b.e	ENSGT00510000047820.k.b
Salmo	ANCESTRAL SPECIES	126							ENSGT00940000166436.g	ENSGT00900000141021.b.b	ENSGT00940000156518.A.m.a	ENSGT00390000002121.d.b.a	ENSGT00940000159016.e	ENSGT00390000002121.d.b.b	ENSGT00940000159016.f	ENSGT00950000182993.B.b.h #32	ENSGT00530000063615.b	ENSGT00940000154063.C.a.b #22	ENSGT00940000159039.b.g.b	ENSGT00940000159039.b.g.a	ENSGT00940000155280.e.k	ENSGT00940000159318.n.b.h	ENSGT00940000163421.a.c.o.d	ENSGT00940000164876.b.bb	ENSGT00940000158383.a.b	ENSGT00390000015189.e.b.c.a	ENSGT00390000015189.e.b.d	ENSGT00940000157834.b.f	ENSGT00940000155577.g.a.g.a	ENSGT00940000155364.g.b.e	ENSGT00390000014091.m.a	ENSGT00940000160332.b.e	ENSGT00510000047820.k.b.e
River trout	DUPLICATION
River trout	MODERN SPECIES	13	ENSSTUG00000008466	si:ch211-14a17.11 (ENSSTUG00000008426)	ENSSTUG00000008404	mmp14b (ENSSTUG00000008337)	ENSSTUG00000008328	ENSSTUG00000008323	ENSSTUG00000008315	cbln12 (ENSSTUG00000008305)	ENSSTUG00000008302	ENSSTUG00000007848	ENSSTUG00000007785	ENSSTUG00000007776	casq1a (ENSSTUG00000007681)	ENSSTUG00000007657	ENSSTUG00000007615	ENSSTUG00000007599 #22	zgc:55733 (ENSSTUG00000007571)	apol1 (ENSSTUG00000007540)	zgc:66427 (ENSSTUG00000007531)	ENSSTUG00000007511	parp2 (ENSSTUG00000007279)	ENSSTUG00000007237	sdr39u1 (ENSSTUG00000007223)	ltb4r2b (ENSSTUG00000007218)	NFATC4 (ENSSTUG00000007215)	ENSSTUG00000007207	MYADM (ENSSTUG00000007200)	pex19 (ENSSTUG00000007190)	copa (ENSSTUG00000006982)	NCSTN (ENSSTUG00000003311)	VANGL2 (ENSSTUG00000003179)
River trout	MODERN SPECIES	5	grap2b (ENSSTUG00000035722)	CACNA1I (ENSSTUG00000034546)	ADAP1 (ENSSTUG00000034452)	ENSSTUG00000034446	lgals2b (ENSSTUG00000034409)	GTPBP1 (ENSSTUG00000034214)	TRMT1 (ENSSTUG00000033954)	NACC1 (ENSSTUG00000033929)	ENSSTUG00000033908	ier2b (ENSSTUG00000033902)	cacna1ab (ENSSTUG00000031045)	wdr83os (ENSSTUG00000031003)	wdr83 (ENSSTUG00000030958)	PSPN (ENSSTUG00000030949) #32	yju2b (ENSSTUG00000048558)	ENSSTUG00000048542 #22	PDGFA (ENSSTUG00000048535)	ENSSTUG00000048532	dnaja3b (ENSSTUG00000048397)	ENSSTUG00000048387	vasna (ENSSTUG00000048361)	ENSSTUG00000048342	GLIS2 (ENSSTUG00000048326)	TFAP4 (ENSSTUG00000048323)	SRL (ENSSTUG00000048315)	ADCY9 (ENSSTUG00000048312)	CREBBP (ENSSTUG00000047346)	ENSSTUG00000047300	mcrip2 (ENSSTUG00000047296)	gde1 (ENSSTUG00000047287)	tmem186 (ENSSTUG00000047285)
Atlantic salmon	DUPLICATION
Atlantic salmon	MODERN SPECIES	5	si:ch211-14a17.11 (ENSSSAG00000024251)	ENSSSAG00000023545	mmp14b (ENSSSAG00000017327)	ENSSSAG00000105855	ENSSSAG00000090707	ENSSSAG00000016848	chd8 (ENSSSAG00000007043)	ENSSSAG00000006918	ENSSSAG00000090059	ENSSSAG00000082573	casq1a (ENSSSAG00000006477)	ENSSSAG00000006254	ENSSSAG00000114979	ENSSSAG00000006210	ENSSSAG00000105696	ENSSSAG00000006118 #22	ENSSSAG00000006048	ENSSSAG00000083545	zgc:66427 (ENSSSAG00000005958)	parp2 (ENSSSAG00000005831)	ENSSSAG00000102885	sdr39u1 (ENSSSAG00000005762)	ltb4r2b (ENSSSAG00000005752)	nfatc4 (ENSSSAG00000005743)	ENSSSAG00000095210	ENSSSAG00000005739	ENSSSAG00000005719	copa (ENSSSAG00000005526)	ENSSSAG00000004931	ENSSSAG00000004816	ENSSSAG00000092386
Atlantic salmon	MODERN SPECIES	11	ENSSSAG00000117388	ENSSSAG00000004241	lgals2b (ENSSSAG00000004257)	ENSSSAG00000001282	ENSSSAG00000001344	ENSSSAG00000001086	ENSSSAG00000101681	man2b1 (ENSSSAG00000001115)	TRMT1 (ENSSSAG00000001098)	ENSSSAG00000001228	ENSSSAG00000001079	CACNA1A (ENSSSAG00000082025)	cs056 (ENSSSAG00000000272)	wdr83 (ENSSSAG00000000249)	ENSSSAG00000100480 #32	c3b.2 (ENSSSAG00000010020) #22	ENSSSAG00000119021	ENSSSAG00000004360	ENSSSAG00000088016	vasna (ENSSSAG00000109010)	ENSSSAG00000040510	ENSSSAG00000040500	GLIS2 (ENSSSAG00000105653)	TFAP4 (ENSSSAG00000040482)	SRL (ENSSSAG00000038939)	ADCY9 (ENSSSAG00000040521)	CREBBP (ENSSSAG00000040665)	ENSSSAG00000000493	mcrip2 (ENSSSAG00000000485)	tmem186 (ENSSSAG00000000193)	ENSSSAG00000047317
Oncorhynchus	ANCESTRAL SPECIES	1												ENSGT00390000002121.d.b.a	ENSGT00940000159016.g.b	ENSGT00950000182993.B.b #32	ENSGT00530000063615.b.i.a	ENSGT00940000154063.C.a.b #22	ENSGT00940000159039.b.g.b	ENSGT00940000180264	ENSGT00940000155280.e	ENSGT00940000159318.n.b	ENSGT00940000163421.a.c.o	ENSGT00940000158383.a.b	ENSGT00940000158383.a.a	ENSGT00390000015189.e.b.d	ENSGT00940000157834.b	ENSGT00940000155577.g.a.h	ENSGT00940000155364.g.b.e	ENSGT00390000014091.m.a	ENSGT00940000160332.b.e	ENSGT00510000047820.k.b	ENSGT00390000000087
Oncorhynchus_a	ANCESTRAL SPECIES	152												ENSGT00390000002121.d.b.a	ENSGT00940000159016.g.b	ENSGT00950000182993.B.b #32	ENSGT00530000063615.b.i.a	ENSGT00940000154063.C.a.b #22	ENSGT00940000159039.b.g.b	ENSGT00940000180264	ENSGT00940000155280.e	ENSGT00940000159318.n.b	ENSGT00940000164876.b	ENSGT00940000158383.a.a	ENSGT00390000015189.e.b.c.b	ENSGT00940000157834.b	ENSGT00940000155577.g.a.h	ENSGT00940000155364.g.b.e	ENSGT00390000014091.n	ENSGT00390000014091.m.b	ENSGT00940000160332.b.e	ENSGT00510000047820.k.b	ENSGT00390000000087.e
Coho salmon	DUPLICATION
Coho salmon	MODERN SPECIES	12	SOX10 (ENSOKIG00005018131)	si:dkey-43k4.3 (ENSOKIG00005018146)	ENSOKIG00005018158	ENSOKIG00005018180	JUNB (ENSOKIG00005018202)	BEST2 (ENSOKIG00005018213)	GET3 (ENSOKIG00005018253)	ENSOKIG00005018272	DDX17 (ENSOKIG00005018358)	GGA1 (ENSOKIG00005020336)	wdr83os (ENSOKIG00005020745)	wdr83 (ENSOKIG00005020770)	PSPN (ENSOKIG00005020798) #32	ENSOKIG00005020804	yju2b (ENSOKIG00005020810)	ENSOKIG00005020826 #22	PDGFA (ENSOKIG00005020981)	fdx2 (ENSOKIG00005021008)	ENSOKIG00005021022	fdx2 (ENSOKIG00005021030)	ENSOKIG00005021040	ENSOKIG00005021054	ENSOKIG00005021063	ENSOKIG00005021082	ENSOKIG00005021118	ENSOKIG00005021132	ENSOKIG00005021147	ENSOKIG00005021195	ENSOKIG00005021207	pdcd4b (ENSOKIG00005021221)	ENSOKIG00005021229
Coho salmon	MODERN SPECIES		ENSOKIG00005036056	ENSOKIG00005036049	TST (ENSOKIG00005036043)	ENSOKIG00005036015	ENSOKIG00005035973	ENSOKIG00005035954	ENSOKIG00005035945	MGAT3 (ENSOKIG00005035932)	TAB1 (ENSOKIG00005035831)	ENSOKIG00005035811	ENSOKIG00005034469	WDR83OS (ENSOKIG00005034447)	wdr83 (ENSOKIG00005034357)	PSPN (ENSOKIG00005034343) #32	yju2b (ENSOKIG00005034330)	ENSOKIG00005034151 #22	PDGFA (ENSOKIG00005034130)	ENSOKIG00005034122	DNAJA3 (ENSOKIG00005033661)	vasna (ENSOKIG00005033616)	b3galt10.2 (ENSOKIG00005033582)	ENSOKIG00005033572	GLIS2 (ENSOKIG00005033562)	TFAP4 (ENSOKIG00005033544)	SRL (ENSOKIG00005033526)	ADCY9 (ENSOKIG00005033511)	CREBBP (ENSOKIG00005030267)	ENSOKIG00005030024	mcrip2 (ENSOKIG00005029984)	gde1 (ENSOKIG00005029934)	tmem186 (ENSOKIG00005029924)
Rainbow trout	DUPLICATION
Rainbow trout	MODERN SPECIES	29	ENSOMYG00000024202	mmp14b (ENSOMYG00000024040)	ENSOMYG00000002633	ENSOMYG00000023981	ENSOMYG00000023970	ENSOMYG00000023951	cbln12 (ENSOMYG00000023923)	ENSOMYG00000023913	chd8 (ENSOMYG00000023744)	ENSOMYG00000023644	ENSOMYG00000072667	casq1a (ENSOMYG00000023546)	ENSOMYG00000064010	ENSOMYG00000023480	ENSOMYG00000023447	ENSOMYG00000023399 #22	ENSOMYG00000043200	ENSOMYG00000023320	ENSOMYG00000023228	zgc:66427 (ENSOMYG00000023178)	ENSOMYG00000023169	parp2 (ENSOMYG00000022893)	ENSOMYG00000022706	sdr39u1 (ENSOMYG00000022691)	ltb4r2b (ENSOMYG00000022683)	ENSOMYG00000022677	ENSOMYG00000068232	ENSOMYG00000022651	ENSOMYG00000020741	ENSOMYG00000020164	ENSOMYG00000020087
Rainbow trout	DUPLICATION
Rainbow trout	MODERN SPECIES	8	ENSOMYG00000067001	ENSOMYG00000062229	ENSOMYG00000053057	ENSOMYG00000054770	ENSOMYG00000006105	ENSOMYG00000056920	man2b1 (ENSOMYG00000056311)	TRMT1 (ENSOMYG00000063332)	NACC1 (ENSOMYG00000061189)	ENSOMYG00000074539	IER2 (ENSOMYG00000058956)	cacna1ab (ENSOMYG00000056222)	wdr83 (ENSOMYG00000004331)	ENSOMYG00000004162 #32	yju2b (ENSOMYG00000057999)	ENSOMYG00000063763 #22	ENSOMYG00000063735	ENSOMYG00000065392	ENSOMYG00000003699	ENSOMYG00000052681	ENSOMYG00000051880	ENSOMYG00000076443	ENSOMYG00000003445	GLIS2 (ENSOMYG00000049927)	TFAP4 (ENSOMYG00000057839)	SRL (ENSOMYG00000071798)	ENSOMYG00000058526	ADCY9 (ENSOMYG00000040356)	CREBBP (ENSOMYG00000074666)	ENSOMYG00000068721	mcrip2 (ENSOMYG00000057651)
Rainbow trout	MODERN SPECIES	4	ENSOMYG00000058623	ENSOMYG00000052135	ENSOMYG00000006301	ENSOMYG00000006049	ENSOMYG00000006157	ENSOMYG00000067231	man2b1 (ENSOMYG00000015439)	TRMT1 (ENSOMYG00000015449)	ENSOMYG00000066348	ENSOMYG00000015462	CACNA1A (ENSOMYG00000057759)	wdr83os (ENSOMYG00000004291)	wdr83 (ENSOMYG00000004256)	ENSOMYG00000062018 #32	yju2b (ENSOMYG00000004035)	ENSOMYG00000064493 #22	pdgfaa (ENSOMYG00000059052)	ENSOMYG00000003773	ENSOMYG00000003732	ENSOMYG00000003604	ENSOMYG00000066216	ENSOMYG00000003527	GLIS2 (ENSOMYG00000003483)	ENSOMYG00000066534	TFAP4 (ENSOMYG00000003310)	SRL (ENSOMYG00000040393)	ADCY9 (ENSOMYG00000040366)	CREBBP (ENSOMYG00000036833)	ENSOMYG00000052802	mcrip2 (ENSOMYG00000040344)	gde1 (ENSOMYG00000036364)
Spotted gar	DUPLICATION
Spotted gar	MODERN SPECIES	298									ENSLOCG00000000239	ENSLOCG00000000223	ENSLOCG00000017657	ENSLOCG00000000200	ENSLOCG00000017656	ENSLOCG00000000188	ENSLOCG00000017655	ENSLOCG00000000125 #22
Spotted gar	DUPLICATION
Spotted gar	MODERN SPECIES	672	tnfsf14 (ENSLOCG00000008873) #23	ENSLOCG00000008892 #23	tmed1a (ENSLOCG00000008903)	ENSLOCG00000008913 #23	dnm2a (ENSLOCG00000008920)	qtrt1 (ENSLOCG00000008949)	ENSLOCG00000008961	zgc:194679 (ENSLOCG00000018301)	ENSLOCG00000008978	ENSLOCG00000008984	ENSLOCG00000009010	ENSLOCG00000009017	ENSLOCG00000009036	ENSLOCG00000009044	ENSLOCG00000009060 #22	ENSLOCG00000009084 #22	ENSLOCG00000009113	ENSLOCG00000009124	CPEB4 (ENSLOCG00000009131)	bod1 (ENSLOCG00000009148)	stc2a (ENSLOCG00000009157)	nkx2.5 (ENSLOCG00000009163)	BNIP1 (ENSLOCG00000009167)	CREBRF (ENSLOCG00000009174)	atp6v0e1 (ENSLOCG00000009182)	rpl26 (ENSLOCG00000009189)	IL17B (ENSLOCG00000009196)	PCYOX1L (ENSLOCG00000009203)	ppp2r2bb (ENSLOCG00000009212)	GPR151 (ENSLOCG00000018302)	ENSLOCG00000009227
Spotted gar	MODERN SPECIES	672	ENSLOCG00000008867	tnfsf14 (ENSLOCG00000008873) #23	ENSLOCG00000008892 #23	tmed1a (ENSLOCG00000008903)	ENSLOCG00000008913 #23	dnm2a (ENSLOCG00000008920)	qtrt1 (ENSLOCG00000008949)	ENSLOCG00000008961	zgc:194679 (ENSLOCG00000018301)	ENSLOCG00000008978	ENSLOCG00000008984	ENSLOCG00000009010	ENSLOCG00000009017	ENSLOCG00000009036	ENSLOCG00000009044	ENSLOCG00000009060 #22	ENSLOCG00000009084 #22	ENSLOCG00000009113	ENSLOCG00000009124	CPEB4 (ENSLOCG00000009131)	bod1 (ENSLOCG00000009148)	stc2a (ENSLOCG00000009157)	nkx2.5 (ENSLOCG00000009163)	BNIP1 (ENSLOCG00000009167)	CREBRF (ENSLOCG00000009174)	atp6v0e1 (ENSLOCG00000009182)	rpl26 (ENSLOCG00000009189)	IL17B (ENSLOCG00000009196)	PCYOX1L (ENSLOCG00000009203)	ppp2r2bb (ENSLOCG00000009212)	GPR151 (ENSLOCG00000018302)
Elephant shark	DUPLICATION
Elephant shark	MODERN SPECIES	1303																ENSCMIG00000001860 #22
Elephant shark	MODERN SPECIES	2174															RDH8 (ENSCMIG00000014424)	ENSCMIG00000014448 #22