Euteleostomi	ANCESTRAL SPECIES	20	ENSGT01100000263502.A.a.a.a.a	ENSGT01070000253816.a.b	ENSGT00940000158723	ENSGT00940000165126	ENSGT00940000163390	ENSGT00940000162539	ENSGT00940000163347	ENSGT00940000160788	ENSGT00940000162313	ENSGT00940000159516	ENSGT00940000156974	ENSGT00940000158878	ENSGT00940000162359	ENSGT00940000160971	ENSGT00940000161248	ENSGT00950000183189.a.b.b #22	ENSGT00950000182974.a.a.a.a #23	ENSGT00940000156803 #24	ENSGT00940000163031.b.b #26	ENSGT00440000033329.b.a.b #27	ENSGT00390000013770 #28	ENSGT00440000033895 #29	ENSGT00940000160633	ENSGT01090000260076.b.a #12	ENSGT00950000183196.D.b #14	ENSGT00390000005094	ENSGT00940000158347	ENSGT00940000167197	ENSGT00940000159451	ENSGT01050000245018	ENSGT00940000164304
Actinopterygii	ANCESTRAL SPECIES	5												ENSGT00440000037505.b	ENSGT00940000159942.b #20	ENSGT00940000160971	ENSGT00940000161248	ENSGT00950000183189.a.b.b #22	ENSGT00950000182974.a.a.a.a #23	ENSGT00940000156803 #24	ENSGT00390000017614	ENSGT00940000163031.b.b #26	ENSGT00440000033329.b.a.b #27	ENSGT00390000013770 #28	ENSGT00440000033895 #29	ENSGT01090000260076.b.a #12	ENSGT00950000183196.D.b #14	ENSGT00390000005094.g	ENSGT00940000158347.y	ENSGT00940000167197	ENSGT00940000159451	ENSGT01050000245018	ENSGT00940000164304
Neopterygii	ANCESTRAL SPECIES	178												ENSGT00440000037505.b	ENSGT00940000159942.b #20	ENSGT00940000160971	ENSGT00940000161248	ENSGT00950000183189.a.b.b #22	ENSGT00950000182974.a.a.a.a #23	ENSGT00940000156803 #24	ENSGT00390000017614	ENSGT00940000163031.b.b #26	ENSGT00440000033329.b.a.b #27	ENSGT00390000013770 #28	ENSGT00440000033895 #29	ENSGT01090000260076.b.a #12	ENSGT00950000183196.D.b #14	ENSGT00390000005094.g	ENSGT00940000158347.y	ENSGT01050000245018	ENSGT00940000159451	ENSGT00940000164304	ENSGT00390000017980
Osteoglossocephalai	ANCESTRAL SPECIES	133								ENSGT00550000075136	ENSGT00940000155470.a	ENSGT00390000006788.a.a	ENSGT00390000011725.c	ENSGT00940000160863 #21	ENSGT00940000159942.b #20	ENSGT00940000160971	ENSGT00940000161248	ENSGT00950000183189.a.b.b #22	ENSGT00950000182974.a.a.a.a #23	ENSGT00940000156803 #24	ENSGT00390000017614	ENSGT00940000163031.b.b #26	ENSGT00440000033329.b.a.b #27	ENSGT00390000013770 #28	ENSGT00440000033895 #29	ENSGT01090000260076.b.a #12	ENSGT00950000183196.D.b #14	ENSGT00940000159795 #16	ENSGT00940000165542 #19	ENSGT00940000153441.b	ENSGT00940000160487 #17	ENSGT00940000160541	ENSGT00510000046732.B
Clupeocephala	ANCESTRAL SPECIES	28	ENSGT00940000162861	ENSGT00940000164256	ENSGT00940000153203.B	ENSGT00940000157061.a	ENSGT00940000159900	ENSGT00940000160999	ENSGT00740000115581.f	ENSGT00940000156736.c.a	ENSGT00390000010318	ENSGT00390000011725.c	ENSGT01000000220275	ENSGT00940000160863 #21	ENSGT00940000159942.b #20	ENSGT00940000160971	ENSGT00940000161248	ENSGT00950000183189.a.b.b #22	ENSGT00950000182974.a.a.a.a #23	ENSGT00940000156803 #24	ENSGT00390000017614.f	ENSGT00940000163031.b.b #26	ENSGT00440000033329.b.a.b #27	ENSGT00390000013770 #28	ENSGT00440000033895 #29	ENSGT00940000160633.b	ENSGT01090000260076.b.a #12	ENSGT00950000183196.D.b #14	ENSGT00940000159795 #16	ENSGT00940000165542 #19	ENSGT00940000160541	ENSGT00510000046732.B	ENSGT00920000149123.d
Acanthomorphata	ANCESTRAL SPECIES	90	ENSGT00940000153232.a.b.b	ENSGT00940000159063	ENSGT00950000182856.a.a.b #10	ENSGT00940000177201 #11	ENSGT01090000260076.b.a #12	ENSGT00940000163421.a.d.b #13	ENSGT00950000183196.D.b #14	ENSGT00940000159795 #16	ENSGT00940000165542 #19	ENSGT00940000154436.c	ENSGT00450000040404.b	ENSGT00940000155503.b	ENSGT00940000162571 #18	ENSGT00940000159942.b #20	ENSGT00940000160863 #21	ENSGT00950000183189.a.b.b #22	ENSGT00950000182974.a.a.a.a #23	ENSGT00940000156803 #24	ENSGT00390000003924 #25	ENSGT00940000163031.b.b #26	ENSGT00440000033329.b.a.b #27	ENSGT00390000013770 #28	ENSGT00440000033895 #29	ENSGT00390000000436 #30	ENSGT00950000183059.a #31	ENSGT00940000153986.b.b #32	ENSGT00940000157743 #33	ENSGT00940000155437 #34	ENSGT00940000167144 #35	ENSGT00940000159024 #37	ENSGT00940000157266.b
Euacanthomorphacea	ANCESTRAL SPECIES	67			ENSGT00950000182856.a.a.b #10	ENSGT00940000177201 #11	ENSGT01090000260076.b.a #12	ENSGT00940000163421.a.d.b #13	ENSGT00950000183196.D.b #14	ENSGT00940000159795 #16	ENSGT00940000165542 #19	ENSGT00940000154436.c	ENSGT00450000040404.b	ENSGT00940000155503.b	ENSGT00940000162571 #18	ENSGT00940000159942.b #20	ENSGT00940000160863 #21	ENSGT00950000183189.a.b.b #22	ENSGT00950000182974.a.a.a.a #23	ENSGT00940000156803 #24	ENSGT00390000003924 #25	ENSGT00940000163031.b.b #26	ENSGT00440000033329.b.a.b #27	ENSGT00390000013770 #28	ENSGT00440000033895 #29	ENSGT00390000000436 #30	ENSGT00950000183059.a #31	ENSGT00940000153986.b.b #32	ENSGT00940000157743 #33	ENSGT00940000155437 #34	ENSGT00940000167144 #35	ENSGT00940000159024 #37	ENSGT00940000157266.b
Percomorphaceae	ANCESTRAL SPECIES	11							ENSGT00950000182856.a.a.b #10	ENSGT00940000177201 #11	ENSGT01090000260076.b.a #12	ENSGT00940000163421.a.d.b #13	ENSGT00950000183196.D.b #14	ENSGT00940000159795 #16	ENSGT00940000165542 #19	ENSGT00940000159942.b #20	ENSGT00940000160863 #21	ENSGT00950000183189.a.b.b #22	ENSGT00950000182974.a.a.a.a #23	ENSGT00940000156803 #24	ENSGT00390000003924 #25	ENSGT00940000163031.b.b #26	ENSGT00440000033329.b.a.b #27	ENSGT00390000013770 #28	ENSGT00440000033895 #29	ENSGT00390000000436 #30	ENSGT00950000183059.a #31	ENSGT00940000153986.b.b #32	ENSGT00940000157743 #33	ENSGT00940000155437 #34	ENSGT00940000167144 #35	ENSGT00940000167349	ENSGT00940000159024 #37
Percomorphaceae_B	ANCESTRAL SPECIES	14	ENSGT00390000016876	ENSGT00950000183097.a.a.a.f.a.b #7	ENSGT00940000155374.g.b #8	ENSGT00940000164070.a	ENSGT00940000163551.i.a #9	ENSGT00950000182856.a.a.b #10	ENSGT00940000177201 #11	ENSGT00390000015084.c.b	ENSGT01090000260076.b.a #12	ENSGT00940000163421.a.d.b #13	ENSGT00950000183196.D.b #14	ENSGT00940000159795 #16	ENSGT00940000160487 #17	ENSGT00940000159942.b #20	ENSGT00940000160863 #21	ENSGT00950000183189.a.b.b #22	ENSGT00950000182974.a.a.a.a #23	ENSGT00940000156803 #24	ENSGT00390000003924 #25	ENSGT00940000163031.b.b #26	ENSGT00440000033329.b.a.b #27	ENSGT00390000013770 #28	ENSGT00440000033895 #29	ENSGT00390000000436 #30	ENSGT00950000183059.a #31	ENSGT00940000153986.b.b #32	ENSGT00940000157743 #33	ENSGT00940000155437 #34	ENSGT00940000167144 #35	ENSGT00940000153110.B.f #36	ENSGT00940000159024 #37
Ovalentaria	ANCESTRAL SPECIES	15	ENSGT00390000016876	ENSGT00950000183097.a.a.a.f.a.b #7	ENSGT00940000155374.g.b #8	ENSGT00940000163551.i.a #9	ENSGT00950000182856.a.a.b #10	ENSGT00940000177201 #11	ENSGT00390000015084.c.b	ENSGT01090000260076.b.a #12	ENSGT00940000163421.a.d.b #13	ENSGT00950000183196.D.b.s.b #14	ENSGT00950000183196.D.b.s.a #15	ENSGT00940000159795 #16	ENSGT00940000160487 #17	ENSGT00940000159942.b #20	ENSGT00940000160863 #21	ENSGT00950000183189.a.b.b #22	ENSGT00950000182974.a.a.a.a #23	ENSGT00940000156803 #24	ENSGT00390000003924 #25	ENSGT00940000163031.b.b #26	ENSGT00440000033329.b.a.b #27	ENSGT00390000013770 #28	ENSGT00440000033895 #29	ENSGT00390000000436 #30	ENSGT00950000183059.a #31	ENSGT00940000153986.b.b #32	ENSGT00940000157743 #33	ENSGT00940000155437 #34	ENSGT00940000167144 #35	ENSGT00940000153110.B.f #36	ENSGT00940000159024 #37
Atherinomorphae	ANCESTRAL SPECIES	9	ENSGT00940000155374.g.b #8	ENSGT00940000163551.i.a #9	ENSGT00950000182856.a.a.b #10	ENSGT00940000177201 #11	ENSGT00390000015084.c.b	ENSGT01090000260076.b.a #12	ENSGT00940000163421.a.d.b #13	ENSGT00950000183196.D.b.s.b #14	ENSGT00950000183196.D.b.s.a #15	ENSGT00940000159795 #16	ENSGT00940000160487 #17	ENSGT00940000162571 #18	ENSGT00940000165542.d #19	ENSGT00940000159942.b #20	ENSGT00940000160863 #21	ENSGT00950000183189.a.b.b #22	ENSGT00950000182974.a.a.a.a #23	ENSGT00940000156803 #24	ENSGT00390000003924 #25	ENSGT00940000163031.b.b #26	ENSGT00440000033329.b.a.b #27	ENSGT00390000013770 #28	ENSGT00440000033895 #29	ENSGT00390000000436 #30	ENSGT00950000183059.a #31	ENSGT00940000153986.b.b #32	ENSGT00940000157743 #33	ENSGT00940000155437 #34	ENSGT00940000167144 #35	ENSGT00940000153110.B.f #36	ENSGT00940000159024 #37
Cyprinodontiformes	ANCESTRAL SPECIES	8	ENSGT00950000183097.a.a.a.f.a.b #7	ENSGT00940000155374.g.b #8	ENSGT00940000163551.i.a #9	ENSGT00950000182856.a.a.b #10	ENSGT00940000177201 #11	ENSGT01090000260076.b.a #12	ENSGT00940000163421.a.d.b #13	ENSGT00950000183196.D.b.s.b #14	ENSGT00950000183196.D.b.s.a #15	ENSGT00940000159795 #16	ENSGT00940000160487 #17	ENSGT00940000162571 #18	ENSGT00940000165542.d #19	ENSGT00940000159942.b #20	ENSGT00940000160863 #21	ENSGT00950000183189.a.b.b #22	ENSGT00950000182974.a.a.a.a #23	ENSGT00940000156803 #24	ENSGT00390000003924 #25	ENSGT00940000163031.b.b #26	ENSGT00440000033329.b.a.b #27	ENSGT00390000013770 #28	ENSGT00440000033895 #29	ENSGT00390000000436 #30	ENSGT00950000183059.a #31	ENSGT00940000153986.b.b #32	ENSGT00940000157743 #33	ENSGT00940000155437 #34	ENSGT00940000167144 #35	ENSGT00940000153110.B.f #36	ENSGT00940000159024 #37
Cyprinodontoidei	ANCESTRAL SPECIES	19	ENSGT00950000183097.a.a.a.f.a.b #7	ENSGT00940000155374.g.b #8	ENSGT00940000163551.i.a #9	ENSGT00950000182856.a.a.b #10	ENSGT00940000177201 #11	ENSGT01090000260076.b.a #12	ENSGT00940000163421.a.d.b #13	ENSGT00950000183196.D.b.s.b #14	ENSGT00950000183196.D.b.s.a #15	ENSGT00940000159795 #16	ENSGT00940000160487 #17	ENSGT00940000162571 #18	ENSGT00940000165542.d #19	ENSGT00940000159942.b #20	ENSGT00940000160863 #21	ENSGT00950000183189.a.b.b #22	ENSGT00950000182974.a.a.a.a #23	ENSGT00940000156803 #24	ENSGT00390000003924 #25	ENSGT00940000163031.b.b #26	ENSGT00440000033329.b.a.b #27	ENSGT00390000013770 #28	ENSGT00440000033895 #29	ENSGT00390000000436 #30	ENSGT00950000183059.a #31	ENSGT00940000153986.b.b #32	ENSGT00940000157743 #33	ENSGT00940000155437 #34	ENSGT00940000167144 #35	ENSGT00940000153110.B.f #36	ENSGT00940000159024 #37
Poeciliinae	ANCESTRAL SPECIES	11	ENSGT00920000149138	ENSGT00390000016876	ENSGT00950000183097.a.a.a.f.a.b #7	ENSGT00940000155374.g.b #8	ENSGT00940000163551.i.a #9	ENSGT00950000182856.a.a.b #10	ENSGT00940000177201 #11	ENSGT01090000260076.b.a #12	ENSGT00940000163421.a.d.b #13	ENSGT00950000183196.D.b.s.b #14	ENSGT00950000183196.D.b.s.a #15	ENSGT00940000159795 #16	ENSGT00940000160487 #17	ENSGT00940000159942.b #20	ENSGT00940000160863 #21	ENSGT00950000183189.a.b.b #22	ENSGT00950000182974.a.a.a.a #23	ENSGT00940000156803 #24	ENSGT00390000003924 #25	ENSGT00940000163031.b.b #26	ENSGT00440000033329.b.a.b #27	ENSGT00390000013770 #28	ENSGT00440000033895 #29	ENSGT00390000000436 #30	ENSGT00950000183059.a #31	ENSGT00940000153986.b.b #32	ENSGT00940000157743 #33	ENSGT00940000155437 #34	ENSGT00940000167144 #35	ENSGT00940000153110.B.f #36	ENSGT00940000159024 #37
Platyfish	MODERN SPECIES	15	st3gal5 (ENSXMAG00000004033)	POLR1A (ENSXMAG00000004032)	ptcd3 (ENSXMAG00000004008)	ENSXMAG00000003965 #7	CNGA2 (ENSXMAG00000003954) #8	ENSXMAG00000003939 #9	snx25 (ENSXMAG00000003919) #10	ENSXMAG00000027917 #11	il1rapl2 (ENSXMAG00000003898) #12	ENSXMAG00000003895 #13	ENSXMAG00000003861 #15	ENSXMAG00000023822 #16	hdac3 (ENSXMAG00000000849) #19	ENSXMAG00000000847 #20	rab33a (ENSXMAG00000000843) #21	fmr1 (ENSXMAG00000000827) #22	ENSXMAG00000015826 #23	ENSXMAG00000015808 #24	dcps (ENSXMAG00000021614) #25	ENSXMAG00000015791 #26	LONRF3 (ENSXMAG00000015785) #27	commd5 (ENSXMAG00000015774) #28	fam199x (ENSXMAG00000015756) #29	smim19 (ENSXMAG00000025278) #30	ENSXMAG00000015740 #31	gpr137 (ENSXMAG00000016326) #32	syvn1 (ENSXMAG00000016296) #33	smad5 (ENSXMAG00000025215) #34	ap1ar (ENSXMAG00000016264) #35	cfap100 (ENSXMAG00000016247) #36	gabra4 (ENSXMAG00000004117) #37
Poecilia	ANCESTRAL SPECIES	21	ENSGT00920000149138	ENSGT00390000016876	ENSGT00950000183097.a.a.a.f.a.b #7	ENSGT00940000155374.g.b #8	ENSGT00940000163551.i.a #9	ENSGT00950000182856.a.a.b #10	ENSGT00940000177201 #11	ENSGT01090000260076.b.a #12	ENSGT00940000163421.a.d.b #13	ENSGT00950000183196.D.b.s.b.a #14	ENSGT00950000183196.D.b.s.a #15	ENSGT00940000159795 #16	ENSGT00940000160487 #17	ENSGT00940000159942.b #20	ENSGT00940000160863 #21	ENSGT00950000183189.a.b.b #22	ENSGT00950000182974.a.a.a.a #23	ENSGT00940000156803 #24	ENSGT00390000003924 #25	ENSGT00940000163031.b.b #26	ENSGT00440000033329.b.a.b #27	ENSGT00390000013770 #28	ENSGT00440000033895 #29	ENSGT00390000000436 #30	ENSGT00950000183059.a #31	ENSGT00940000153986.b.b #32	ENSGT00940000157743 #33	ENSGT00940000155437 #34	ENSGT00940000167144 #35	ENSGT00940000153110.B.f #36	ENSGT00940000159024 #37
NAME_6	ANCESTRAL SPECIES	238												ENSGT00940000159795 #16	ENSGT00940000160487 #17	ENSGT00940000159942.b #20	ENSGT00940000160863 #21	ENSGT00950000183189.a.b.b #22	ENSGT00950000182974.a.a.a.a #23	ENSGT00940000156803 #24	ENSGT00390000003924 #25	ENSGT00940000163031.b.b #26	ENSGT00440000033329.b.a.b #27	ENSGT00390000013770 #28	ENSGT00440000033895 #29	ENSGT00390000000436 #30	ENSGT00950000183059.a #31	ENSGT00940000153986.b.b #32	ENSGT00940000157743 #33	ENSGT00940000155437 #34	ENSGT00940000167144 #35	ENSGT00940000153110.B.f #36	ENSGT00940000159024 #37
Sailfin molly	MODERN SPECIES	940										ENSPLAG00000005325 #16	HDAC3 (ENSPLAG00000005319) #17	ENSPLAG00000005290	ENSPLAG00000005276 #20	ENSPLAG00000005249 #20	rab33a (ENSPLAG00000005189) #21	fmr1 (ENSPLAG00000005126) #22	ENSPLAG00000005118	ENSPLAG00000005101 #23	ids (ENSPLAG00000005003) #24	dcps (ENSPLAG00000004963) #25	ENSPLAG00000004948 #26	LONRF3 (ENSPLAG00000004931) #27	commd5 (ENSPLAG00000004918) #28	fam199x (ENSPLAG00000004902) #29	smim19 (ENSPLAG00000004880) #30	ENSPLAG00000004868 #31	gpr137 (ENSPLAG00000000729) #32	syvn1 (ENSPLAG00000004842) #33	smad5 (ENSPLAG00000004817) #34	ap1ar (ENSPLAG00000004796) #35	cfap100 (ENSPLAG00000004775) #36
Amazon molly	MODERN SPECIES	471	zgc:110843 (ENSPFOG00000002445)	ENSPFOG00000019888	ENSPFOG00000002448	PSD2 (ENSPFOG00000002467)	PURA (ENSPFOG00000019889)	nrg2b (ENSPFOG00000002747)	ENSPFOG00000019890	eif1ad (ENSPFOG00000002981)	ctsf (ENSPFOG00000003046)	aup1 (ENSPFOG00000003188)	fnta (ENSPFOG00000003352)	ENSPFOG00000003385 #16	HDAC3 (ENSPFOG00000003483) #17	ENSPFOG00000003861 #20	rab33a (ENSPFOG00000004037) #21	fmr1 (ENSPFOG00000004138) #22	ENSPFOG00000004499 #23	ENSPFOG00000004524 #23	ids (ENSPFOG00000004618) #24	ENSPFOG00000024267	dcps (ENSPFOG00000004892) #25	ENSPFOG00000004983 #26	LONRF3 (ENSPFOG00000005067) #27	commd5 (ENSPFOG00000005235) #28	fam199x (ENSPFOG00000005327) #29	ENSPFOG00000005393 #31	smim19 (ENSPFOG00000005570) #30	gpr137 (ENSPFOG00000005601) #32	syvn1 (ENSPFOG00000005606) #33	smad5 (ENSPFOG00000005752) #34	ap1ar (ENSPFOG00000005816) #35
Guppy	DUPLICATION
Guppy	MODERN SPECIES	440	POLR1A (ENSPREG00000002389)	ptcd3 (ENSPREG00000002536)	ENSPREG00000002649 #7	CNGA2 (ENSPREG00000002728) #8	ENSPREG00000002940 #9	snx25 (ENSPREG00000002955) #10	ENSPREG00000003010 #11	il1rapl2 (ENSPREG00000003053) #12	zgc:194679 (ENSPREG00000003078) #13	ENSPREG00000003086 #14	ENSPREG00000003093 #15	ENSPREG00000003122 #16	ENSPREG00000003155	ENSPREG00000003173 #20	rab33a (ENSPREG00000003221) #21	fmr1 (ENSPREG00000003249) #22	ENSPREG00000003285 #23	ids (ENSPREG00000003394) #24	dcps (ENSPREG00000003444) #25	ENSPREG00000003459	LONRF3 (ENSPREG00000003538) #27	commd5 (ENSPREG00000003562) #28	fam199x (ENSPREG00000003581) #29	smim19 (ENSPREG00000003602) #30	ENSPREG00000003613 #31	gpr137 (ENSPREG00000003634) #32	syvn1 (ENSPREG00000003641) #33	smad5 (ENSPREG00000003680) #34	ap1ar (ENSPREG00000003723) #35	cfap100 (ENSPREG00000003760) #36	gabra4 (ENSPREG00000003823) #37
Guppy	MODERN SPECIES	158																fmr1 (ENSPREG00000014149) #22
NAME_4	ANCESTRAL SPECIES	64								ENSGT01090000260076.b.a #12	ENSGT00940000163421.a.d.b #13	ENSGT00950000183196.D.b.s.a #15	ENSGT00940000159795 #16	ENSGT00940000160487 #17	ENSGT00940000162571 #18	ENSGT00940000159942.b #20	ENSGT00940000160863 #21	ENSGT00950000183189.a.b.b #22	ENSGT00950000182974.a.a.a.a #23	ENSGT00940000156803 #24	ENSGT00390000003924 #25	ENSGT00940000163031.b.b #26	ENSGT00440000033329.b.a.b #27	ENSGT00390000013770 #28	ENSGT00440000033895 #29	ENSGT00390000000436 #30	ENSGT00950000183059.a #31	ENSGT00940000153986.b.b #32	ENSGT00940000157743 #33	ENSGT00940000155437 #34	ENSGT00940000167144 #35	ENSGT00940000153110.B.f #36	ENSGT00940000159024 #37
Mummichog	MODERN SPECIES	280							il1rapl2 (ENSFHEG00000022369) #12	ENSFHEG00000022330 #13	ENSFHEG00000022316 #15	ENSFHEG00000022258 #16	HDAC3 (ENSFHEG00000022243) #17	ENSFHEG00000022185 #18	ENSFHEG00000022162 #20	ENSFHEG00000022148 #20	rab33a (ENSFHEG00000022141) #21	fmr1 (ENSFHEG00000000636) #22	ENSFHEG00000022097 #23	ids (ENSFHEG00000000663) #24	dcps (ENSFHEG00000021972) #25	ENSFHEG00000000874 #26
Sheepshead minnow	MODERN SPECIES	560									ENSCVAG00000011816 #14	ENSCVAG00000011795 #15	ENSCVAG00000011761 #16	HDAC3 (ENSCVAG00000011733) #17	ENSCVAG00000011695 #20	rab33a (ENSCVAG00000011665) #21	ENSCVAG00000011659	fmr1 (ENSCVAG00000011644) #22	AFF2 (ENSCVAG00000011467) #23	ids (ENSCVAG00000011418) #24	dcps (ENSCVAG00000011377) #25
Aplocheiloidei	ANCESTRAL SPECIES	69	ENSGT00940000157929	ENSGT00920000149138	ENSGT00390000016876	ENSGT00950000183097.a.a.a.f.a.b #7	ENSGT00940000155374.g.b #8	ENSGT00940000163551.i.a #9	ENSGT00950000182856.a.a.b #10	ENSGT00940000177201 #11	ENSGT01090000260076.b.a #12	ENSGT00940000163421.a.d.b #13	ENSGT00950000183196.D.b.s.a #15	ENSGT00940000159795 #16	ENSGT00940000160487 #17	ENSGT00940000159942.b #20	ENSGT00940000160863 #21	ENSGT00950000183189.a.b.b #22	ENSGT00950000182974.a.a.a.a #23	ENSGT00940000156803 #24	ENSGT00390000003924 #25	ENSGT00940000163031.b.b #26	ENSGT00440000033329.b.a.b #27	ENSGT00390000013770 #28	ENSGT00440000033895 #29
Mangrove rivulus	MODERN SPECIES	69	PLS3 (ENSKMAG00000007299) #7	CNGA2 (ENSKMAG00000007260) #8	ENSKMAG00000007240 #9	snx25 (ENSKMAG00000007155) #10	ENSKMAG00000007085	ENSKMAG00000007029	ENSKMAG00000007005	ENSKMAG00000006993 #11	il1rapl2 (ENSKMAG00000006907) #12	zgc:194679 (ENSKMAG00000006882) #13	ENSKMAG00000006808 #15	ENSKMAG00000006772 #16	HDAC3 (ENSKMAG00000006701) #17	ENSKMAG00000006631 #20	rab33a (ENSKMAG00000006593) #21	fmr1 (ENSKMAG00000006554) #22	ENSKMAG00000006510 #23	ids (ENSKMAG00000006454) #24	dcps (ENSKMAG00000006439) #25	ENSKMAG00000006338 #26	LONRF3 (ENSKMAG00000006285) #27	commd5 (ENSKMAG00000006250) #28
Oryzias	ANCESTRAL SPECIES	17	ENSGT00940000157929	ENSGT00920000149138	ENSGT00390000016876	ENSGT00950000183097.a.a.a.f.a.b #7	ENSGT00940000155374.g.b #8	ENSGT00940000164070.a	ENSGT00950000182856.a.a.b #10	ENSGT00940000177201 #11	ENSGT00390000015084.c.b	ENSGT01090000260076.b.a #12	ENSGT00950000183196.D.b.s.a #15	ENSGT00940000159795 #16	ENSGT00940000160487 #17	ENSGT00940000159942.b #20	ENSGT00940000160863 #21	ENSGT00950000183189.a.b.b #22	ENSGT00950000182974.a.a.a.a #23	ENSGT00940000156803 #24	ENSGT00390000003924 #25	ENSGT00940000163031.b.b #26	ENSGT00440000033329.b.a.b #27	ENSGT00390000013770 #28	ENSGT00440000033895 #29	ENSGT00390000000436 #30	ENSGT00950000183059.a #31	ENSGT00940000153986.b.b #32	ENSGT00940000157743 #33	ENSGT00940000155437 #34	ENSGT00940000167144 #35	ENSGT00940000153110.B.f #36	ENSGT00940000159024 #37
Oryzias_b	ANCESTRAL SPECIES	20														ENSGT00940000159942.b #20	ENSGT00940000160863 #21	ENSGT00950000183189.a.b.b #22	ENSGT00950000182974.a.a.a.a #23	ENSGT00940000156803 #24	ENSGT00390000003924 #25	ENSGT00940000163031.b.b #26	ENSGT00440000033329.b.a.b #27	ENSGT00390000013770 #28	ENSGT00440000033895 #29	ENSGT00390000000436 #30	ENSGT00950000183059.a #31	ENSGT00940000153986.b.b #32	ENSGT00940000157743 #33	ENSGT00940000155437 #34	ENSGT00940000167144 #35	ENSGT00940000153110.B.f #36	ENSGT00940000159024 #37
Indian medaka	MODERN SPECIES	16	slc37a4a (ENSOMEG00000017902)	cfap45 (ENSOMEG00000000445)	cltcb (ENSOMEG00000017800)	VASP (ENSOMEG00000017543)	ENSOMEG00000000439 ##19	hdac3 (ENSOMEG00000017507) #19	ENSOMEG00000000644	HDAC3 (ENSOMEG00000017479) #17	ENSOMEG00000017461	hdac3 (ENSOMEG00000017435) #19	ENSOMEG00000017410	ENSOMEG00000017399	ENSOMEG00000017378	ENSOMEG00000017338 #20	rab33a (ENSOMEG00000017306) #21	fmr1 (ENSOMEG00000017281) #22	ENSOMEG00000017218 #23	ids (ENSOMEG00000017167) #24	dcps (ENSOMEG00000017125) #25	ENSOMEG00000017101 #26	LONRF3 (ENSOMEG00000017011) #27	commd5 (ENSOMEG00000016978) #28	fam199x (ENSOMEG00000016943) #29	smim19 (ENSOMEG00000016889) #30	ENSOMEG00000016865 #31	gpr137 (ENSOMEG00000016838) #32	syvn1 (ENSOMEG00000016804) #33	smad5 (ENSOMEG00000016733) #34	ap1ar (ENSOMEG00000016705) #35	cfap100 (ENSOMEG00000016681) #36	gabra4 (ENSOMEG00000016611) #37
Javanese ricefish	MODERN SPECIES	1	st3gal5 (ENSOJAG00000010205)	acsl1b (ENSOJAG00000010550)	ENSOJAG00000014160	CASP3 (ENSOJAG00000014186)	irf2 (ENSOJAG00000014196)	ENSOJAG00000014203	SLITRK4 (ENSOJAG00000014208)	ENSOJAG00000014211	ENSOJAG00000014249	ENSOJAG00000014443	ENSOJAG00000014557	ENSOJAG00000014627	ENSOJAG00000014676	ENSOJAG00000014935 #20	rab33a (ENSOJAG00000015066) #21	fmr1 (ENSOJAG00000015156) #22	ENSOJAG00000016360 #23	ids (ENSOJAG00000016385) #24	dcps (ENSOJAG00000001563) #25	ENSOJAG00000001595 #26	LONRF3 (ENSOJAG00000001630) #27	commd5 (ENSOJAG00000001658) #28	fam199x (ENSOJAG00000001677) #29	smim19 (ENSOJAG00000001699) #30	ENSOJAG00000001722 #31	gpr137 (ENSOJAG00000001754) #32	syvn1 (ENSOJAG00000001772) #33	smad5 (ENSOJAG00000001800) #34	ap1ar (ENSOJAG00000001834) #35	cfap100 (ENSOJAG00000001845) #36	gabra4 (ENSOJAG00000001933) #37
Oryzias_a	ANCESTRAL SPECIES	47	ENSGT00940000157929	ENSGT00920000149138	ENSGT00390000016876	ENSGT00950000183097.a.a.a.f.a.b #7	ENSGT00940000155374.g.b #8	ENSGT00940000164070.a	ENSGT00950000182856.a.a.b #10	ENSGT00940000177201 #11	ENSGT00390000015084.c.b	ENSGT01090000260076.b.a #12	ENSGT00950000183196.D.b.s.a #15	ENSGT00940000159795 #16	ENSGT00940000160487 #17	ENSGT00940000159942.b #20	ENSGT00940000160863 #21	ENSGT00950000183189.a.b.b #22	ENSGT00950000182974.a.a.a.a #23	ENSGT00940000156803 #24	ENSGT00390000003924 #25	ENSGT00940000163031.b.b #26	ENSGT00440000033329.b.a.b #27	ENSGT00390000013770 #28	ENSGT00440000033895 #29	ENSGT00390000000436 #30	ENSGT00950000183059.a #31	ENSGT00940000153986.b.b #32	ENSGT00940000157743 #33	ENSGT00940000155437 #34	ENSGT00940000167144 #35	ENSGT00940000153110.B.f #36	ENSGT00940000159024 #37
Japanese Medaka HdrR	MODERN SPECIES	1	POLR1A (ENSORLG00000008753)	ptcd3 (ENSORLG00000008776)	ENSORLG00000008846 #7	ENSORLG00000008864 #8	ENSORLG00000008878	snx25 (ENSORLG00000008915) #10	ENSORLG00000027299 #11	ENSORLG00000028262	il1rapl2 (ENSORLG00000030351) #12	ENSORLG00000008968 #15	ENSORLG00000008975 #16	HDAC3 (ENSORLG00000009006) #17	ENSORLG00000022646	ENSORLG00000009026 #20	rab33a (ENSORLG00000030566) #21	fmr1 (ENSORLG00000009094) #22	ENSORLG00000009121 #23	ids (ENSORLG00000009159) #24	dcps (ENSORLG00000009177) #25	ENSORLG00000022533 #26	ENSORLG00000009245 #27	commd5 (ENSORLG00000009265) #28	fam199x (ENSORLG00000009294) #29	smim19 (ENSORLG00000009304) #30	ENSORLG00000009324 #31	gpr137 (ENSORLG00000009353) #32	syvn1 (ENSORLG00000009383) #33	smad5 (ENSORLG00000009395) #34	ap1ar (ENSORLG00000009413) #35	ENSORLG00000009420 #36	gabra4 (ENSORLG00000009442) #37
Chinese medaka	MODERN SPECIES	1058	st3gal5 (ENSOSIG00000013695)	POLR1A (ENSOSIG00000013709)	ENSOSIG00000013835 #7	CNGA2 (ENSOSIG00000013839) #8	ENSOSIG00000013843	snx25 (ENSOSIG00000013855) #10	ENSOSIG00000014211 #11	il1rapl2 (ENSOSIG00000014216) #12	ENSOSIG00000014798	ENSOSIG00000014801	ENSOSIG00000014803 #15	ENSOSIG00000014808 #16	HDAC3 (ENSOSIG00000014811) #17	ENSOSIG00000014820 #20	ENSOSIG00000014821	fmr1 (ENSOSIG00000014824) #22	ENSOSIG00000014826 #23	ids (ENSOSIG00000014832) #24	dcps (ENSOSIG00000014871) #25	ENSOSIG00000014875 #26	LONRF3 (ENSOSIG00000014885) #27	commd5 (ENSOSIG00000014891) #28	fam199x (ENSOSIG00000014897) #29	smim19 (ENSOSIG00000014901) #30	ENSOSIG00000014904 #31	gpr137 (ENSOSIG00000014907) #32	syvn1 (ENSOSIG00000014909) #33	smad5 (ENSOSIG00000014914) #34	ap1ar (ENSOSIG00000014949) #35	cfap100 (ENSOSIG00000014955) #36	gabra4 (ENSOSIG00000014964) #37
Ovalentaria_B	ANCESTRAL SPECIES	13	ENSGT00940000163551.i.a #9	ENSGT00950000182856.a.a.b #10	ENSGT00940000177201 #11	ENSGT01090000260076.b.a #12	ENSGT00940000163421.a.d.b #13	ENSGT00950000183196.D.b.t ##14	ENSGT00950000183196.D.b.s.b #14	ENSGT00950000183196.D.b.s.a #15	ENSGT00940000159795 #16	ENSGT00940000160487 #17	ENSGT00940000155503.b	ENSGT00940000162571 #18	ENSGT00940000165542.d #19	ENSGT00940000159942.b #20	ENSGT00940000160863 #21	ENSGT00950000183189.a.b.b #22	ENSGT00950000182974.a.a.a.a #23	ENSGT00940000156803 #24	ENSGT00390000003924 #25	ENSGT00940000163031.b.b #26	ENSGT00440000033329.b.a.b #27	ENSGT00390000013770 #28	ENSGT00440000033895 #29	ENSGT00390000000436 #30	ENSGT00950000183059.a #31	ENSGT00940000153986.b.b #32	ENSGT00940000157743 #33	ENSGT00940000155437 #34	ENSGT00940000167144 #35	ENSGT00940000153110.B.f #36	ENSGT00940000159024 #37
Pomacentridae	ANCESTRAL SPECIES	4	ENSGT00920000149138	ENSGT00390000016876	ENSGT00950000183097.a.a.a.f.a.b #7	ENSGT00940000155374.g.b #8	ENSGT00940000163551.i.a #9	ENSGT00950000182856.a.a.b #10	ENSGT00390000015084.c.b	ENSGT01090000260076.b.a #12	ENSGT00940000163421.a.d.b #13	ENSGT00950000183196.D.b.s.b #14	ENSGT00950000183196.D.b.s.a #15	ENSGT00940000159795 #16	ENSGT00940000160487 #17	ENSGT00940000159942.b #20	ENSGT00940000160863 #21	ENSGT00950000183189.a.b.b #22	ENSGT00950000182974.a.a.a.a #23	ENSGT00940000156803 #24	ENSGT00390000003924 #25	ENSGT00940000163031.b.b #26	ENSGT00440000033329.b.a.b #27	ENSGT00390000013770.i #28	ENSGT00440000033895 #29	ENSGT00390000000436 #30	ENSGT00950000183059.a #31	ENSGT00940000153986.b.b #32	ENSGT00940000157743 #33	ENSGT00940000155437 #34	ENSGT00940000167144 #35	ENSGT00940000153110.B.f #36	ENSGT00940000159024 #37
Pomacentridae_A	ANCESTRAL SPECIES	119	ENSGT00920000149138	ENSGT00390000016876	ENSGT00950000183097.a.a.a.f.a.b #7	ENSGT00940000155374.g.b #8	ENSGT00940000163551.i.a #9	ENSGT00950000182856.a.a.b #10	ENSGT00390000015084.c.b	ENSGT01090000260076.b.a #12	ENSGT00940000163421.a.d.b #13	ENSGT00950000183196.D.b.s.b #14	ENSGT00950000183196.D.b.s.a #15	ENSGT00940000159795 #16	ENSGT00940000160487 #17	ENSGT00940000159942.b #20	ENSGT00940000160863 #21	ENSGT00950000183189.a.b.b #22	ENSGT00950000182974.a.a.a.a #23	ENSGT00940000156803 #24	ENSGT00390000003924 #25	ENSGT00940000163031.b.b #26	ENSGT00440000033329.b.a.b #27	ENSGT00390000013770.i #28	ENSGT00440000033895 #29	ENSGT00390000000436 #30	ENSGT00950000183059.a #31	ENSGT00940000153986.b.b #32	ENSGT00940000157743 #33	ENSGT00940000167144 #35
Amphiprion	ANCESTRAL SPECIES	143	ENSGT00920000149138	ENSGT00390000016876	ENSGT00950000183097.a.a.a.f.a.b #7	ENSGT00940000155374.g.b #8	ENSGT00940000163551.i.a #9	ENSGT00950000182856.a.a.b #10	ENSGT00390000015084.c.b	ENSGT01090000260076.b.a #12	ENSGT00940000163421.a.d.b #13	ENSGT00950000183196.D.b.s.b #14	ENSGT00950000183196.D.b.s.a #15	ENSGT00940000159795 #16	ENSGT00940000160487 #17	ENSGT00940000159942.b #20	ENSGT00940000160863 #21	ENSGT00950000183189.a.b.b #22	ENSGT00950000182974.a.a.a.a #23	ENSGT00940000156803 #24	ENSGT00390000003924 #25	ENSGT00940000163031.b.b #26	ENSGT00440000033329.b.a.b #27	ENSGT00390000013770.i #28	ENSGT00440000033895 #29	ENSGT00390000000436 #30	ENSGT00950000183059.a #31	ENSGT00940000153986.b.b #32	ENSGT00940000157743 #33	ENSGT00940000155437 #34	ENSGT00940000167144 #35
Orange clownfish	MODERN SPECIES	4	PLS3 (ENSAPEG00000016033) #7	CNGA2 (ENSAPEG00000015986) #8	ENSAPEG00000015969 #9	snx25 (ENSAPEG00000015944) #10	ENSAPEG00000015913	il1rapl2 (ENSAPEG00000015812) #12	zgc:194679 (ENSAPEG00000015793) #13	ENSAPEG00000015758 #15	ENSAPEG00000015667 #16	ENSAPEG00000015628	HDAC3 (ENSAPEG00000015573) #17	ENSAPEG00000015563 #20	ENSAPEG00000015552 #20	ENSAPEG00000015462 #20	rab33a (ENSAPEG00000015376) #21	fmr1 (ENSAPEG00000015355) #22	ENSAPEG00000015300 #23	ids (ENSAPEG00000015244) #24	dcps (ENSAPEG00000015231) #25	ENSAPEG00000015206 #26	LONRF3 (ENSAPEG00000015187) #27	commd5 (ENSAPEG00000015168) #28	fam199x (ENSAPEG00000015137) #29	smim19 (ENSAPEG00000015122) #30	ENSAPEG00000015115 #31	gpr137 (ENSAPEG00000015083) #32	syvn1 (ENSAPEG00000015066) #33	smad5 (ENSAPEG00000015002) #34	ap1ar (ENSAPEG00000014952) #35	zgc:174917 (ENSAPEG00000014890)	ENSAPEG00000014880
Clown anemonefish	MODERN SPECIES	1442												ENSAOCG00000007359 #16	HDAC3 (ENSAOCG00000007417) #17	ENSAOCG00000007438 #20	rab33a (ENSAOCG00000007448) #21	fmr1 (ENSAOCG00000008025) #22	PRMT8 (ENSAOCG00000008130)	CRACR2A (ENSAOCG00000008147)	TMTC2 (ENSAOCG00000008189)
Spiny chromis	MODERN SPECIES	801													ENSAPOG00000006487 #20	ENSAPOG00000006474 #20	rab33a (ENSAPOG00000000952) #21	fmr1 (ENSAPOG00000006422) #22
Bicolor damselfish	MODERN SPECIES	396	spata4 (ENSSPAG00000006193)	gpm6aa (ENSSPAG00000006157)	lrit3a (ENSSPAG00000006147)	egf (ENSSPAG00000006051)	elovl6 (ENSSPAG00000006016)	pitx2 (ENSSPAG00000006003)	zgc:77938 (ENSSPAG00000005986)	gar1 (ENSSPAG00000005974)	ENSSPAG00000005953	eif4ea (ENSSPAG00000005937)	ENSSPAG00000005922	ENSSPAG00000005892 #16	HDAC3 (ENSSPAG00000005839) #17	ENSSPAG00000005813 #20	rab33a (ENSSPAG00000005785) #21	fmr1 (ENSSPAG00000005758) #22
Cichlidae	ANCESTRAL SPECIES	8	ENSGT00940000155374.g.b #8	ENSGT00940000163551.i.a #9	ENSGT00950000182856.a.a.b #10	ENSGT00940000177201 #11	ENSGT01090000260076.b.a #12	ENSGT00940000163421.a.d.b #13	ENSGT00950000183196.D.b.s.a #15	ENSGT00940000159795 #16	ENSGT00940000160487 #17	ENSGT00940000159942.b.j.a #20	ENSGT00940000155503.b	ENSGT00940000162571 #18	ENSGT00940000165542.d #19	ENSGT00940000159942.b.j.b #20	ENSGT00940000160863 #21	ENSGT00950000183189.a.b.b #22	ENSGT00950000182974.a.a.a.a #23	ENSGT00940000156803 #24	ENSGT00390000003924 #25	ENSGT00940000163031.b.b #26	ENSGT00440000033329.b.a.b #27	ENSGT00390000013770 #28	ENSGT00440000033895 #29	ENSGT00390000000436 #30	ENSGT00950000183059.a #31	ENSGT00940000153986.b.b #32	ENSGT00940000157743 #33	ENSGT00940000155437 #34	ENSGT00940000167144 #35	ENSGT00940000153110.B.f #36	ENSGT00940000159024 #37
Pseudocrenilabrinae	ANCESTRAL SPECIES	17	ENSGT00390000016876	ENSGT00950000183097.a.a.a.f.a.b #7	ENSGT00940000155374.g.b #8	ENSGT00940000163551.i.a #9	ENSGT00950000182856.a.a.b #10	ENSGT00940000177201 #11	ENSGT01090000260076.b.a #12	ENSGT00940000163421.a.d.b #13	ENSGT00950000183196.D.b.s.a #15	ENSGT00940000159795 #16	ENSGT00940000160487 #17	ENSGT00940000162571 #18	ENSGT00940000165542.d #19	ENSGT00940000159942.b.j.b #20	ENSGT00940000160863 #21	ENSGT00950000183189.a.b.b #22	ENSGT00950000182974.a.a.a.a #23	ENSGT00940000156803 #24	ENSGT00390000003924 #25	ENSGT00940000163031.b.b #26	ENSGT00440000033329.b.a.b #27	ENSGT00390000013770 #28	ENSGT00440000033895 #29	ENSGT00390000000436 #30	ENSGT00950000183059.a #31	ENSGT00940000153986.b.b #32	ENSGT00940000157743 #33	ENSGT00940000155437 #34	ENSGT00940000167144 #35	ENSGT00940000153110.B.f #36	ENSGT00940000159024 #37
Pseudocrenilabrinae_A	ANCESTRAL SPECIES	20	ENSGT00920000149138	ENSGT00390000016876	ENSGT00950000183097.a.a.a.f.a.b #7	ENSGT00940000155374.g.b #8	ENSGT00940000163551.i.a #9	ENSGT00950000182856.a.a.b #10	ENSGT00940000177201 #11	ENSGT01090000260076.b.a #12	ENSGT00940000163421.a.d.b #13	ENSGT00950000183196.D.b.s.a #15	ENSGT00940000159795 #16	ENSGT00940000160487 #17	ENSGT00940000162571 #18	ENSGT00940000159942.b.j.b #20	ENSGT00940000160863 #21	ENSGT00950000183189.a.b.b #22	ENSGT00950000182974.a.a.a.a #23	ENSGT00940000156803 #24	ENSGT00390000003924 #25	ENSGT00940000163031.b.b #26	ENSGT00440000033329.b.a.b #27	ENSGT00390000013770 #28	ENSGT00440000033895 #29	ENSGT00390000000436 #30	ENSGT00950000183059.a #31	ENSGT00940000153986.b.b #32	ENSGT00940000157743 #33	ENSGT00940000155437 #34	ENSGT00940000167144 #35	ENSGT00940000153110.B.f #36	ENSGT00940000159024 #37
Haplochromini	ANCESTRAL SPECIES	14	ENSGT00940000157929	ENSGT00920000149138	ENSGT00390000016876	ENSGT00950000183097.a.a.a.f.a.b #7	ENSGT00940000155374.g.b #8	ENSGT00940000163551.i.a #9	ENSGT00950000182856.a.a.b #10	ENSGT00940000177201 #11	ENSGT01090000260076.b.a #12	ENSGT00940000163421.a.d.b #13	ENSGT00950000183196.D.b.s.a #15	ENSGT00940000159795 #16	ENSGT00940000160487 #17	ENSGT00940000159942.b.j.b #20	ENSGT00940000160863 #21	ENSGT00950000183189.a.b.b #22	ENSGT00950000182974.a.a.a.a #23	ENSGT00940000156803 #24	ENSGT00390000003924 #25	ENSGT00940000163031.b.b #26	ENSGT00440000033329.b.a.b #27	ENSGT00390000013770 #28	ENSGT00440000033895 #29	ENSGT00390000000436 #30	ENSGT00950000183059.a #31	ENSGT00940000153986.b.b #32	ENSGT00940000157743 #33	ENSGT00940000155437 #34	ENSGT00940000167144 #35	ENSGT00940000153110.B.f #36	ENSGT00940000159024 #37
Haplochromini_A	ANCESTRAL SPECIES	13	ENSGT00390000016876	ENSGT00950000183097.a.a.a.f.a.b #7	ENSGT00940000155374.g.b #8	ENSGT00940000163551.i.a #9	ENSGT00950000182856.a.a.b #10	ENSGT00390000015084.c.b	ENSGT00940000177201 #11	ENSGT01090000260076.b.a #12	ENSGT00940000163421.a.d.b #13	ENSGT00950000183196.D.b.s.a #15	ENSGT00940000159795 #16	ENSGT00940000160487 #17	ENSGT00940000167162	ENSGT00940000159942.b.j.b #20	ENSGT00940000160863 #21	ENSGT00950000183189.a.b.b #22	ENSGT00950000182974.a.a.a.a #23	ENSGT00940000156803 #24	ENSGT00390000003924 #25	ENSGT00940000163031.b.b #26	ENSGT00440000033329.b.a.b #27	ENSGT00390000013770 #28	ENSGT00440000033895 #29	ENSGT00390000000436 #30	ENSGT00950000183059.a #31	ENSGT00940000153986.b.b #32	ENSGT00940000157743 #33	ENSGT00940000155437 #34	ENSGT00940000167144 #35	ENSGT00940000153110.B.f #36	ENSGT00940000159024 #37
Eastern happy	MODERN SPECIES	11	ptcd3 (ENSACLG00000020653)	PLS3 (ENSACLG00000020687) #7	CNGA2 (ENSACLG00000020745) #8	ENSACLG00000020795 #9	snx25 (ENSACLG00000020812) #10	ENSACLG00000020979	ENSACLG00000021049	il1rapl2 (ENSACLG00000021101) #12	zgc:194679 (ENSACLG00000021224) #13	ENSACLG00000021259 #15	ENSACLG00000021405 #16	HDAC3 (ENSACLG00000021445) #17	ENSACLG00000021528	ENSACLG00000021535 #20	rab33a (ENSACLG00000021547) #21	fmr1 (ENSACLG00000021559) #22	ENSACLG00000021630 #23	ids (ENSACLG00000021652) #24	dcps (ENSACLG00000021703) #25	zgc:66433 (ENSACLG00000021734) #26	LONRF3 (ENSACLG00000021827) #27	commd5 (ENSACLG00000021853) #28	fam199x (ENSACLG00000021889) #29	smim19 (ENSACLG00000021938) #30	ENSACLG00000021955 #31	gpr137 (ENSACLG00000021974) #32	syvn1 (ENSACLG00000021994) #33	smad5 (ENSACLG00000022024) #34	ap1ar (ENSACLG00000022055) #35	cfap100 (ENSACLG00000022088) #36	gabra4 (ENSACLG00000022117) #37
P. nyererei	MODERN SPECIES	296	CNGA2 (ENSPNYG00000000030) #8	ENSPNYG00000000031 #9	snx25 (ENSPNYG00000000032) #10	ENSPNYG00000000033 #11	il1rapl2 (ENSPNYG00000000034) #12	zgc:194679 (ENSPNYG00000000035) #13	ENSPNYG00000000036 ##14	ENSPNYG00000000037 ##14	ENSPNYG00000000038 #16	HDAC3 (ENSPNYG00000000039) #17	ENSPNYG00000000040	ENSPNYG00000000041 #20	ENSPNYG00000000042 #20	ENSPNYG00000000043 #20	rab33a (ENSPNYG00000000044) #21	fmr1 (ENSPNYG00000000045) #22	ENSPNYG00000000046 #23	ids (ENSPNYG00000000047) #24	dcps (ENSPNYG00000000048) #25	zgc:66433 (ENSPNYG00000000049) #26	LONRF3 (ENSPNYG00000000050) #27	commd5 (ENSPNYG00000000051) #28	fam199x (ENSPNYG00000000052) #29	smim19 (ENSPNYG00000000053) #30	ENSPNYG00000000054 #31	gpr137 (ENSPNYG00000000055) #32	syvn1 (ENSPNYG00000000056) #33	smad5 (ENSPNYG00000000057) #34	ap1ar (ENSPNYG00000000058) #35	ENSPNYG00000000059	gabra4 (ENSPNYG00000000060) #37
Burton s mouthbrooder	MODERN SPECIES	423	nol4lb (ENSHBUG00000013109)	srms (ENSHBUG00000012974)	ptk6b (ENSHBUG00000012939)	ppdpfb (ENSHBUG00000012866)	tpd52l2b (ENSHBUG00000012850)	trim101 (ENSHBUG00000012836)	DNAJC5 (ENSHBUG00000012771)	adrm1 (ENSHBUG00000012755)	ENSHBUG00000012731	ENSHBUG00000012687	rps21 (ENSHBUG00000012656)	cry3a (ENSHBUG00000012636)	RAB29 (ENSHBUG00000012594)	ENSHBUG00000012567	rab33a (ENSHBUG00000012548) #21	fmr1 (ENSHBUG00000012534) #22	ENSHBUG00000012447 #23	ids (ENSHBUG00000012372) #24	dcps (ENSHBUG00000012352) #25	zgc:66433 (ENSHBUG00000012334) #26	LONRF3 (ENSHBUG00000012308) #27	commd5 (ENSHBUG00000012299) #28	fam199x (ENSHBUG00000012276) #29	smim19 (ENSHBUG00000012227) #30	ENSHBUG00000012235 #31	gpr137 (ENSHBUG00000012209) #32	syvn1 (ENSHBUG00000012201) #33	smad5 (ENSHBUG00000012099) #34	ap1ar (ENSHBUG00000012072) #35	cfap100 (ENSHBUG00000012050) #36	gabra4 (ENSHBUG00000012038) #37
Lyretail cichlid	MODERN SPECIES	292	ptcd3 (ENSNBRG00000000447)	PLS3 (ENSNBRG00000000385) #7	CNGA2 (ENSNBRG00000000349) #8	ENSNBRG00000000312	ENSNBRG00000000303 #11	snx25 (ENSNBRG00000000270) #10	il1rapl2 (ENSNBRG00000000241) #12	zgc:194679 (ENSNBRG00000000236) #13	ENSNBRG00000000226 ##14	ENSNBRG00000022407 ##14	ENSNBRG00000022387 #16	HDAC3 (ENSNBRG00000022356) #17	ENSNBRG00000022330 #18	ENSNBRG00000022270 #20	rab33a (ENSNBRG00000022235) #21	fmr1 (ENSNBRG00000022213) #22	ENSNBRG00000022193 #23	ids (ENSNBRG00000022099) #24	dcps (ENSNBRG00000022078) #25	zgc:66433 (ENSNBRG00000022057) #26	LONRF3 (ENSNBRG00000022042) #27	commd5 (ENSNBRG00000022018) #28	fam199x (ENSNBRG00000021989) #29	smim19 (ENSNBRG00000021970) #30	ENSNBRG00000021927 #31	gpr137 (ENSNBRG00000021895) #32	ap1ar (ENSNBRG00000021873) #35	ENSNBRG00000021845	gabra4 (ENSNBRG00000021817) #37	ENSNBRG00000021789	GUF1 (ENSNBRG00000021743)
Nile tilapia	MODERN SPECIES	11	PLS3 (ENSONIG00000015882) #7	CNGA2 (ENSONIG00000015875) #8	ENSONIG00000015872 #9	snx25 (ENSONIG00000015865) #10	ENSONIG00000037161 #11	ENSONIG00000038615	il1rapl2 (ENSONIG00000015862) #12	zgc:194679 (ENSONIG00000015860) #13	ENSONIG00000015844 #15	ENSONIG00000041935	ENSONIG00000015842 #16	hdac3 (ENSONIG00000015834) #19	ENSONIG00000027464 #20	ENSONIG00000039736 #20	rab33a (ENSONIG00000033599) #21	fmr1 (ENSONIG00000015823) #22	ENSONIG00000015816 #23	ids (ENSONIG00000015811) #24	dcps (ENSONIG00000015808) #25	ENSONIG00000042628	zgc:66433 (ENSONIG00000015804) #26	LONRF3 (ENSONIG00000015802) #27	commd5 (ENSONIG00000015801) #28	fam199x (ENSONIG00000040053) #29	smim19 (ENSONIG00000041392) #30	ENSONIG00000015797 #31	gpr137 (ENSONIG00000015794) #32	syvn1 (ENSONIG00000015793) #33	smad5 (ENSONIG00000015791) #34	ap1ar (ENSONIG00000015789) #35	cfap100 (ENSONIG00000015787) #36
Midas cichlid	MODERN SPECIES	920	ptcd3 (ENSACIG00000022263)	PLS3 (ENSACIG00000022285) #7	CNGA2 (ENSACIG00000022304) #8	ENSACIG00000022319 #9	snx25 (ENSACIG00000022335) #10	ENSACIG00000022358 #11	il1rapl2 (ENSACIG00000022368) #12	zgc:194679 (ENSACIG00000022391) #13	ENSACIG00000022397 ##14	ENSACIG00000022410 ##14	ENSACIG00000022421 #16	HDAC3 (ENSACIG00000022451) #17	ENSACIG00000022472 #20	ENSACIG00000022483 #20	rab33a (ENSACIG00000022520) #21	fmr1 (ENSACIG00000022552) #22	ENSACIG00000022732 #23	ids (ENSACIG00000022813) #24	dcps (ENSACIG00000022830) #25	ENSACIG00000022857
Percomorphaceae_C	ANCESTRAL SPECIES	16	ENSGT00390000016876	ENSGT00950000183097.a.a.a.f.a.b #7	ENSGT00940000155374.g.b #8	ENSGT00940000163551.i.a #9	ENSGT00950000182856.a.a.b #10	ENSGT00940000177201 #11	ENSGT00390000015084.c.b	ENSGT01090000260076.b.a #12	ENSGT00940000163421.a.d.b #13	ENSGT00950000183196.D.b #14	ENSGT00940000159795 #16	ENSGT00940000165542 #19	ENSGT00940000160487 #17	ENSGT00940000159942.b #20	ENSGT00940000160863 #21	ENSGT00950000183189.a.b.b #22	ENSGT00950000182974.a.a.a.a #23	ENSGT00940000156803 #24	ENSGT00390000003924 #25	ENSGT00940000163031.b.b #26	ENSGT00440000033329.b.a.b #27	ENSGT00390000013770 #28	ENSGT00440000033895 #29	ENSGT00390000000436 #30	ENSGT00950000183059.a #31	ENSGT00940000153986.b.b #32	ENSGT00940000157743 #33	ENSGT00940000155437 #34	ENSGT00940000167144 #35	ENSGT00940000153110.B.f #36	ENSGT00940000159024 #37
Eupercaria	ANCESTRAL SPECIES	12	ENSGT00390000016876	ENSGT00950000183097.a.a.a.f.a.b #7	ENSGT00940000155374.g.b #8	ENSGT00940000163551.i.a #9	ENSGT00950000182856.a.a.b #10	ENSGT00940000177201 #11	ENSGT00390000015084.c.b	ENSGT01090000260076.b.a #12	ENSGT00940000163421.a.d.b #13	ENSGT00950000183196.D.b #14	ENSGT00940000159795 #16	ENSGT00940000165542 #19	ENSGT00940000160487 #17	ENSGT00940000159942.b #20	ENSGT00940000160863 #21	ENSGT00950000183189.a.b.b #22	ENSGT00950000182974.a.a.a.a #23	ENSGT00940000156803 #24	ENSGT00390000003924 #25	ENSGT00940000163031.b.b #26	ENSGT00440000033329.b.a.b #27	ENSGT00390000013770 #28	ENSGT00440000033895 #29	ENSGT00390000000436 #30	ENSGT00950000183059.a #31	ENSGT00940000153986.b.b #32	ENSGT00940000157743 #33	ENSGT00940000155437 #34	ENSGT00940000167144 #35	ENSGT00940000153110.B.f #36	ENSGT00940000159024 #37
Tetraodontidae	ANCESTRAL SPECIES	317															ENSGT00940000160863 #21	ENSGT00950000183189.a.b.b #22
Tetraodon	DUPLICATION
Tetraodon	MODERN SPECIES	26	CLIP3 (ENSTNIG00000011174)	ENSTNIG00000000233	ENSTNIG00000011173	CAPNS1 (ENSTNIG00000011172)	zgc:101731 (ENSTNIG00000011171)	ENSTNIG00000011101	ENSTNIG00000011100	ENSTNIG00000010761	chd2 (ENSTNIG00000010760)	il1rapl2 (ENSTNIG00000010126) #12	rab33ba (ENSTNIG00000010125)	zgc:113425 (ENSTNIG00000000099)	ENSTNIG00000010124 #16	HDAC3 (ENSTNIG00000010123) #17	rab33a (ENSTNIG00000010122) #21	fmr1 (ENSTNIG00000010121) #22	FGF4 (ENSTNIG00000010120)	snx25 (ENSTNIG00000010119) #10	CNGA2 (ENSTNIG00000010118) #8	ptcd3 (ENSTNIG00000010117)	POLR1A (ENSTNIG00000010116)	st3gal5 (ENSTNIG00000001056)	ENSTNIG00000000345	acsl1b (ENSTNIG00000010115)	SLITRK4 (ENSTNIG00000010114)	ENSTNIG00000009812	fgfr1op2 (ENSTNIG00000009811)	tpbga (ENSTNIG00000009810)	TMEM222 (ENSTNIG00000009809)	ZDHHC18 (ENSTNIG00000009808)	rab42a (ENSTNIG00000009807)
Tetraodon	MODERN SPECIES	26	ssr1 (ENSTNIG00000002140)	ENSTNIG00000002141	pctp (ENSTNIG00000002142)	rtn4a (ENSTNIG00000002143)	ENSTNIG00000002144	ENSTNIG00000002145	ENSTNIG00000002146	ENSTNIG00000006222	ENSTNIG00000002147	ezh2 (ENSTNIG00000004203)	stk38a (ENSTNIG00000002148)	stk35 (ENSTNIG00000002149)	ENSTNIG00000002150	ENSTNIG00000002151	ENSTNIG00000000176	fmr1 (ENSTNIG00000002152) #22	ENSTNIG00000002153	dnajc25 (ENSTNIG00000002154)	HDAC6 (ENSTNIG00000002155)	ENSTNIG00000002156	ENSTNIG00000002157	ENSTNIG00000002159	ENSTNIG00000002161	ENSTNIG00000002162	ENSTNIG00000000571	ccdc106a (ENSTNIG00000002163)	ENSTNIG00000002164	ENSTNIG00000002165	ENSTNIG00000000063	ENSTNIG00000001583	hlfa (ENSTNIG00000002167)
Fugu	MODERN SPECIES	5	hars (ENSTRUG00000009144)	ENSTRUG00000009108	trappc11 (ENSTRUG00000008668)	setd7 (ENSTRUG00000008535)	ENSTRUG00000008281	ENSTRUG00000029520	ENSTRUG00000019580	hspa9 (ENSTRUG00000007906)	zgc:113425 (ENSTRUG00000031780)	il1rapl2 (ENSTRUG00000007177) #12	rab33ba (ENSTRUG00000007036)	zgc:113425 (ENSTRUG00000028514)	ENSTRUG00000006892 #16	HDAC3 (ENSTRUG00000032750) #17	rab33a (ENSTRUG00000020335) #21	fmr1 (ENSTRUG00000005362) #22	FGF4 (ENSTRUG00000005334)	snx25 (ENSTRUG00000005163) #10	CNGA2 (ENSTRUG00000004575) #8	ENSTRUG00000030595	ptcd3 (ENSTRUG00000003939)	POLR1A (ENSTRUG00000002210)	ENSTRUG00000032892	st3gal5 (ENSTRUG00000030641)	flr (ENSTRUG00000002112)	acsl1b (ENSTRUG00000002168)	ENSTRUG00000031067	ENSTRUG00000032220	ENSTRUG00000028561	ENSTRUG00000029457	ENSTRUG00000026218
Eupecaria_A	ANCESTRAL SPECIES	13	ENSGT00390000016876	ENSGT00950000183097.a.a.a.f.a.b #7	ENSGT00940000155374.g.b #8	ENSGT00940000163551.i.a #9	ENSGT00950000182856.a.a.b #10	ENSGT00940000177201 #11	ENSGT00390000015084.c.b	ENSGT01090000260076.b.a #12	ENSGT00940000163421.a.d.b #13	ENSGT00950000183196.D.b #14	ENSGT00940000159795 #16	ENSGT00940000165542 #19	ENSGT00940000160487 #17	ENSGT00940000159942.b #20	ENSGT00940000160863 #21	ENSGT00950000183189.a.b.b #22	ENSGT00950000182974.a.a.a.a #23	ENSGT00940000156803 #24	ENSGT00390000003924 #25	ENSGT00940000163031.b.b #26	ENSGT00440000033329.b.a.b #27	ENSGT00390000013770 #28	ENSGT00440000033895 #29	ENSGT00390000000436 #30	ENSGT00950000183059.a #31	ENSGT00940000153986.b.b #32	ENSGT00940000157743 #33	ENSGT00940000155437 #34	ENSGT00940000167144 #35	ENSGT00940000153110.B.f #36	ENSGT00940000159024 #37
Ballan wrasse	MODERN SPECIES	67	CNGA2 (ENSLBEG00000015182) #8	ENSLBEG00000015159	ENSLBEG00000015134	ENSLBEG00000015111 #9	snx25 (ENSLBEG00000014990) #10	ENSLBEG00000014894	il1rapl2 (ENSLBEG00000014751) #12	zgc:194679 (ENSLBEG00000014693) #13	ENSLBEG00000014637 #14	ENSLBEG00000014606 #16	ENSLBEG00000014591	HDAC3 (ENSLBEG00000014544) #17	ENSLBEG00000014488	ENSLBEG00000014463 #20	rab33a (ENSLBEG00000014427) #21	fmr1 (ENSLBEG00000014381) #22	ENSLBEG00000014344 #23	ids (ENSLBEG00000014277) #24	dcps (ENSLBEG00000014244) #25	ENSLBEG00000014153 #26	aup1 (ENSLBEG00000014035)	fnta (ENSLBEG00000013995)	PIGG (ENSLBEG00000013933)
Eupecaria_B	ANCESTRAL SPECIES	13	ENSGT00920000149138	ENSGT00390000016876	ENSGT00950000183097.a.a.a.f.a.b #7	ENSGT00940000155374.g.b #8	ENSGT00940000163551.i.a #9	ENSGT00950000182856.a.a.b #10	ENSGT00940000177201 #11	ENSGT00390000015084.c.b	ENSGT01090000260076.b.a #12	ENSGT00940000163421.a.d.b #13	ENSGT00950000183196.D.b #14	ENSGT00940000159795 #16	ENSGT00940000165542 #19	ENSGT00940000159942.b #20	ENSGT00940000160863 #21	ENSGT00950000183189.a.b.b #22	ENSGT00950000182974.a.a.a.a #23	ENSGT00940000156803 #24	ENSGT00390000003924 #25	ENSGT00940000163031.b.b #26	ENSGT00440000033329.b.a.b #27	ENSGT00390000013770 #28	ENSGT00440000033895 #29	ENSGT00390000000436 #30	ENSGT00950000183059.a #31	ENSGT00940000153986.b.b #32	ENSGT00940000157743 #33	ENSGT00940000155437 #34	ENSGT00940000167144 #35	ENSGT00940000153110.B.f #36	ENSGT00940000159024 #37
Eupecaria_C	ANCESTRAL SPECIES	12	ENSGT00390000016876	ENSGT00950000183097.a.a.a.f.a.b #7	ENSGT00940000155374.g.b #8	ENSGT00940000163551.i.a #9	ENSGT00950000182856.a.a.b #10	ENSGT00940000177201 #11	ENSGT00390000015084.c.b	ENSGT01090000260076.b.a #12	ENSGT00940000163421.a.d.b #13	ENSGT00950000183196.D.b #14	ENSGT00940000159795 #16	ENSGT00940000165542 #19	ENSGT00940000160487 #17	ENSGT00940000159942.b #20	ENSGT00940000160863 #21	ENSGT00950000183189.a.b.b #22	ENSGT00950000182974.a.a.a.a #23	ENSGT00940000156803 #24	ENSGT00390000003924 #25	ENSGT00940000163031.b.b #26	ENSGT00440000033329.b.a.b #27	ENSGT00390000013770 #28	ENSGT00440000033895 #29	ENSGT00390000000436 #30	ENSGT00950000183059.a #31	ENSGT00940000153986.b.b #32	ENSGT00940000157743 #33	ENSGT00940000155437 #34	ENSGT00940000167144 #35	ENSGT00940000153110.B.f #36	ENSGT00940000159024 #37
Gilthead seabream	MODERN SPECIES	9	ptcd3 (ENSSAUG00010016732)	ENSSAUG00010016939 #7	ENSSAUG00010017132	CNGA2 (ENSSAUG00010017135) #8	ENSSAUG00010017136 #9	snx25 (ENSSAUG00010017173) #10	ENSSAUG00010017982 #11	ENSSAUG00010017979	il1rapl2 (ENSSAUG00010017998) #12	zgc:194679 (ENSSAUG00010018050) #13	ENSSAUG00010018165 #14	ENSSAUG00010023126 #16	hdac3 (ENSSAUG00010023132) #19	ENSSAUG00010023161 #20	rab33a (ENSSAUG00010023163) #21	fmr1 (ENSSAUG00010023172) #22	ENSSAUG00010023611 #23	ids (ENSSAUG00010023617) #24	dcps (ENSSAUG00010023681) #25	ENSSAUG00010023688 #26	LONRF3 (ENSSAUG00010023699) #27	commd5 (ENSSAUG00010023711) #28	fam199x (ENSSAUG00010023714) #29	ENSSAUG00010023716	ENSSAUG00010023718	smim19 (ENSSAUG00010023721) #30	ENSSAUG00010023724 #31	gpr137 (ENSSAUG00010023742) #32	syvn1 (ENSSAUG00010023747) #33	smad5 (ENSSAUG00010023757) #34	ap1ar (ENSSAUG00010023785) #35
Eupercaria_incertae_sedis	ANCESTRAL SPECIES	14	ENSGT00920000149138	ENSGT00390000016876	ENSGT00950000183097.a.a.a.f.a.b #7	ENSGT00940000155374.g.b #8	ENSGT00940000163551.i.a #9	ENSGT00950000182856.a.a.b #10	ENSGT00390000015084.c.b	ENSGT01090000260076.b.a #12	ENSGT00940000163421.a.d.b #13	ENSGT00950000183196.D.b #14	ENSGT00940000159795 #16	ENSGT00940000165542 #19	ENSGT00940000160487 #17	ENSGT00940000159942.b #20	ENSGT00940000160863 #21	ENSGT00950000183189.a.b.b #22	ENSGT00950000182974.a.a.a.a #23	ENSGT00940000156803 #24	ENSGT00390000003924 #25	ENSGT00940000163031.b.b #26	ENSGT00440000033329.b.a.b #27	ENSGT00390000013770 #28	ENSGT00440000033895 #29	ENSGT00390000000436 #30	ENSGT00950000183059.a #31	ENSGT00940000153986.b.b #32	ENSGT00940000157743 #33	ENSGT00940000155437 #34	ENSGT00940000167144 #35	ENSGT00940000153110.B.f #36	ENSGT00940000159024 #37
European seabass	MODERN SPECIES	12	ENSDLAG00005027637	ACSL1 (ENSDLAG00005013960)	ST3GAL5 (ENSDLAG00005013896)	ENSDLAG00005011769	PTCD3 (ENSDLAG00005011664)	ENSDLAG00005010305 #7	ENSDLAG00005010149 #8	ENSDLAG00005010119 #9	ENSDLAG00005009414 #10	ENSDLAG00005008920 #12	ENSDLAG00005008898 #13	ENSDLAG00005008846 #14	ENSDLAG00005008808 #16	ENSDLAG00005013499 #17	ENSDLAG00005008778 #20	ENSDLAG00005008727 #22	ids (ENSDLAG00005008634) #24	ENSDLAG00005008622 #25	ENSDLAG00005008572 #26	ENSDLAG00005008440 #27	ENSDLAG00005008427 #28	ENSDLAG00005027786 #29	ENSDLAG00005008371	ENSDLAG00005008365 #30	ENSDLAG00005008273 #31	gpr137 (ENSDLAG00005008262) #32	syvn1 (ENSDLAG00005008199) #33	smad5 (ENSDLAG00005008085) #34	ap1ar (ENSDLAG00005008027) #35	ENSDLAG00005007998 #36	gabra4 (ENSDLAG00005034250) #37
Large yellow croaker	MODERN SPECIES		eif1ad (ENSLCRG00005006419)	ENSLCRG00005006418	ap1ar (ENSLCRG00005006417) #35	smad5 (ENSLCRG00005006357) #34	gabra4 (ENSLCRG00005006352) #37	ENSLCRG00005006078	ENSLCRG00005006076	GUF1 (ENSLCRG00005005229)	PIGG (ENSLCRG00005005216)	fnta (ENSLCRG00005005212)	aup1 (ENSLCRG00005005208)	ctsf (ENSLCRG00005005206)	ctsf (ENSLCRG00005005154)	ENSLCRG00005005152 #20	rab33a (ENSLCRG00005005151) #21	fmr1 (ENSLCRG00005005099) #22	ENSLCRG00005005093 #23	ids (ENSLCRG00005005084) #24	dcps (ENSLCRG00005005081) #25	ENSLCRG00005005079 #26	LONRF3 (ENSLCRG00005005070) #27	ENSLCRG00005005069 #28	ENSLCRG00005005068	fam199x (ENSLCRG00005005065) #29	ENSLCRG00005005064	smim19 (ENSLCRG00005005062) #30	ENSLCRG00005005024 #31	gpr137 (ENSLCRG00005005020) #32	syvn1 (ENSLCRG00005005008) #33	ENSLCRG00005005003 #36	hdac3 (ENSLCRG00005004244) #19
Perciformes	ANCESTRAL SPECIES	13	ENSGT00940000157929	ENSGT00920000149138	ENSGT00390000016876	ENSGT00950000183097.a.a.a.f.a.b #7	ENSGT00940000155374.g.b #8	ENSGT00940000163551.i.a #9	ENSGT00950000182856.a.a.b #10	ENSGT00940000177201 #11	ENSGT01090000260076.b.a #12	ENSGT00940000163421.a.d.b #13	ENSGT00950000183196.D.b #14	ENSGT00940000159795 #16	ENSGT00940000165542 #19	ENSGT00940000159942.b #20	ENSGT00940000160863 #21	ENSGT00950000183189.a.b.b #22	ENSGT00950000182974.a.a.a.a #23	ENSGT00940000156803 #24	ENSGT00390000003924 #25	ENSGT00940000163031.b.b #26	ENSGT00440000033329.b.a.b #27	ENSGT00390000013770 #28	ENSGT00440000033895 #29	ENSGT00390000000436 #30	ENSGT00950000183059.a #31	ENSGT00940000153986.b.b #32	ENSGT00940000157743 #33	ENSGT00940000155437 #34	ENSGT00940000167144 #35	ENSGT00940000153110.B.f #36	ENSGT00940000159024 #37
Cottioidei	ANCESTRAL SPECIES	9	ENSGT00940000177201 #11	ENSGT00950000182856.a.a.b #10	ENSGT00940000163551.i.a #9	ENSGT00940000155374.g.b #8	ENSGT00950000183097.a.a.a.f.a.b #7	ENSGT00390000016876	ENSGT00920000149138	ENSGT00940000157929	ENSGT00940000154508.a.a.s.b	ENSGT00390000015511	ENSGT00940000153232.a.b.b	ENSGT00940000159063	ENSGT00940000160971	ENSGT00940000159942.b #20	ENSGT00940000160863 #21	ENSGT00950000183189.a.b.b #22	ENSGT00950000182974.a.a.a.a #23	ENSGT00940000156803 #24	ENSGT00390000003924 #25	ENSGT00940000163031.b.b #26	ENSGT00440000033329.b.a.b #27	ENSGT00390000013770 #28	ENSGT00440000033895 #29	ENSGT00390000000436 #30	ENSGT00950000183059.a #31	ENSGT00940000153986.b.b #32	ENSGT00940000157743 #33	ENSGT00940000155437 #34	ENSGT00940000167144 #35	ENSGT00940000153110.B.f #36	ENSGT00940000159024 #37
Stickleback	MODERN SPECIES	3	POLR1A (ENSGACG00000018791)	st3gal5 (ENSGACG00000018789)	acsl1b (ENSGACG00000018774)	CASP3 (ENSGACG00000018770)	CASP3 (ENSGACG00000018769)	CASP3 (ENSGACG00000018765)	irf2 (ENSGACG00000018763)	ENSGACG00000018762	ENSGACG00000018760	SLITRK4 (ENSGACG00000018757)	ENSGACG00000018756	ssr1 (ENSGACG00000018755)	HDAC3 (ENSGACG00000018752) #17	ENSGACG00000018748 #20	rab33a (ENSGACG00000018745) #21	fmr1 (ENSGACG00000018742) #22	ENSGACG00000018740 #23	ids (ENSGACG00000018736) #24	dcps (ENSGACG00000018734) #25	ENSGACG00000018733 #26	LONRF3 (ENSGACG00000018731) #27	commd5 (ENSGACG00000018730) #28	fam199x (ENSGACG00000018729) #29	smim19 (ENSGACG00000018728) #30	ENSGACG00000018727 #31	ENSGACG00000018726	gpr137 (ENSGACG00000018724) #32	syvn1 (ENSGACG00000018723) #33	smad5 (ENSGACG00000018718) #34	ap1ar (ENSGACG00000018714) #35	cfap100 (ENSGACG00000018712) #36
Lumpfish	MODERN SPECIES	1	ENSCLMG00005008455 #9	CNGA2 (ENSCLMG00005008456) #8	ENSCLMG00005008520 #7	ptcd3 (ENSCLMG00005008965)	POLR1A (ENSCLMG00005008969)	st3gal5 (ENSCLMG00005008996)	acsl1b (ENSCLMG00005009025)	ENSCLMG00005015053	CASP3 (ENSCLMG00005015054)	irf2 (ENSCLMG00005015056)	ENSCLMG00005015057	SLITRK4 (ENSCLMG00005015058)	hdac3 (ENSCLMG00005015063) #19	ENSCLMG00005017625 #20	rab33a (ENSCLMG00005017629) #21	fmr1 (ENSCLMG00005017630) #22	ENSCLMG00005017637 #23	ids (ENSCLMG00005018339) #24	dcps (ENSCLMG00005018340) #25	ENSCLMG00005018342 #26	LONRF3 (ENSCLMG00005018346) #27	commd5 (ENSCLMG00005018349) #28	fam199x (ENSCLMG00005018351) #29	smim19 (ENSCLMG00005018355) #30	ENSCLMG00005018357 #31	gpr137 (ENSCLMG00005018358) #32	syvn1 (ENSCLMG00005018362) #33	smad5 (ENSCLMG00005018363) #34	ap1ar (ENSCLMG00005018371) #35	ENSCLMG00005018373	gabra4 (ENSCLMG00005018376) #37
Perciformes_a	ANCESTRAL SPECIES	11	ENSGT00390000016876	ENSGT00950000183097.a.a.a.f.a.b #7	ENSGT00940000155374.g.b #8	ENSGT00940000163551.i.a #9	ENSGT00950000182856.a.a.b #10	ENSGT00390000015084.c.b	ENSGT01090000260076.b.a #12	ENSGT00940000163421.a.d.b #13	ENSGT00950000183196.D.b #14	ENSGT00940000159795 #16	ENSGT00940000160487 #17	ENSGT00940000162571 #18	ENSGT00940000165542 #19	ENSGT00940000159942.b #20	ENSGT00940000160863 #21	ENSGT00950000183189.a.b.b #22	ENSGT00950000182974.a.a.a.a #23	ENSGT00940000156803 #24	ENSGT00390000003924 #25	ENSGT00940000163031.b.b #26	ENSGT00440000033329.b.a.b #27	ENSGT00390000013770 #28	ENSGT00440000033895 #29	ENSGT00390000000436 #30	ENSGT00950000183059.a #31	ENSGT00940000153986.b.b #32	ENSGT00940000157743 #33	ENSGT00940000155437 #34	ENSGT00940000167144 #35	ENSGT00940000153110.B.f #36	ENSGT00940000159024 #37
Channel bull blenny	MODERN SPECIES	1	ptcd3 (ENSCGOG00000021907)	ENSCGOG00000021787 #7	CNGA2 (ENSCGOG00000021759) #8	ENSCGOG00000021755 #9	snx25 (ENSCGOG00000021570) #10	ENSCGOG00000021556	ENSCGOG00000021554	il1rapl2 (ENSCGOG00000021505) #12	zgc:194679 (ENSCGOG00000021498) #13	ENSCGOG00000016922 #14	ENSCGOG00000016700 #16	hdac3 (ENSCGOG00000013662) #19	ENSCGOG00000013604 #20	ENSCGOG00000013597 #20	rab33a (ENSCGOG00000013593) #21	fmr1 (ENSCGOG00000012601) #22	AFF2 (ENSCGOG00000012588) #23	ids (ENSCGOG00000012580) #24	ENSCGOG00000011977	dcps (ENSCGOG00000011959) #25	ENSCGOG00000011955 #26	LONRF3 (ENSCGOG00000011929) #27	commd5 (ENSCGOG00000011920) #28	fam199x (ENSCGOG00000011908) #29	smim19 (ENSCGOG00000011905) #30	ENSCGOG00000011888 #31	gpr137 (ENSCGOG00000011885) #32	syvn1 (ENSCGOG00000011640) #33	smad5 (ENSCGOG00000011562) #34	ap1ar (ENSCGOG00000011558) #35	ENSCGOG00000011553 #36
Pike perch	MODERN SPECIES	52	ENSSLUG00000013215 #9	snx25 (ENSSLUG00000012013) #10	ENSSLUG00000011955 #11	ENSSLUG00000011953	ENSSLUG00000011951	ENSSLUG00000011948	ENSSLUG00000011939	il1rapl2 (ENSSLUG00000011929) #12	zgc:194679 (ENSSLUG00000011922) #13	ENSSLUG00000011886 #14	MYOT (ENSSLUG00000011869) #16	HDAC3 (ENSSLUG00000011799) #17	ENSSLUG00000011783 #18	ENSSLUG00000011760 #20	rab33a (ENSSLUG00000011749) #21	fmr1 (ENSSLUG00000011289) #22	AFF2 (ENSSLUG00000011246) #23	ENSSLUG00000011235	ids (ENSSLUG00000010729) #24	dcps (ENSSLUG00000010695) #25	ENSSLUG00000010682 #26	LONRF3 (ENSSLUG00000010651) #27	commd5 (ENSSLUG00000010644) #28	fam199x (ENSSLUG00000010600) #29	smim19 (ENSSLUG00000010590) #30	ENSSLUG00000010585 #31	gpr137 (ENSSLUG00000010580) #32	syvn1 (ENSSLUG00000010528) #33	smad5 (ENSSLUG00000010439) #34	ap1ar (ENSSLUG00000010421) #35	ENSSLUG00000010411 #36
Percomorphaceae_D	ANCESTRAL SPECIES	17	ENSGT00920000149138	ENSGT00390000016876	ENSGT00950000183097.a.a.a.f.a.b #7	ENSGT00940000155374.g.b #8	ENSGT00940000164070.a	ENSGT00950000182856.a.a.b #10	ENSGT00940000177201 #11	ENSGT01090000260076.b.a #12	ENSGT00940000163421.a.d.b #13	ENSGT00950000183196.D.b #14	ENSGT00940000159795 #16	ENSGT00940000165542 #19	ENSGT00940000160487 #17	ENSGT00940000159942.b #20	ENSGT00940000160863 #21	ENSGT00950000183189.a.b.b #22	ENSGT00950000182974.a.a.a.a #23	ENSGT00940000156803 #24	ENSGT00390000003924 #25	ENSGT00940000163031.b.b #26	ENSGT00440000033329.b.a.b #27	ENSGT00390000013770 #28	ENSGT00440000033895 #29	ENSGT00390000000436 #30	ENSGT00950000183059.a #31	ENSGT00940000153986.b.b #32	ENSGT00940000157743 #33	ENSGT00940000155437 #34	ENSGT00940000167144 #35	ENSGT00940000153110.B.f #36	ENSGT00940000159024 #37
Anabantaria	ANCESTRAL SPECIES	15	ENSGT00940000157929	ENSGT00920000149138	ENSGT00390000016876	ENSGT00950000183097.a.a.a.f.a.b #7	ENSGT00940000155374.g.b #8	ENSGT00940000164070.a	ENSGT00950000182856.a.a.b #10	ENSGT00390000015084.c.b	ENSGT01090000260076.b.a #12	ENSGT00940000163421.a.d.b #13	ENSGT00950000183196.D.b #14	ENSGT00940000159795 #16	ENSGT00940000165542 #19	ENSGT00940000159942.b #20	ENSGT00940000160863 #21	ENSGT00950000183189.a.b.b #22	ENSGT00950000182974.a.a.a.a #23	ENSGT00940000156803 #24	ENSGT00390000003924 #25	ENSGT00940000163031.b.b #26	ENSGT00440000033329.b.a.b #27	ENSGT00390000013770 #28	ENSGT00440000033895 #29	ENSGT00390000000436 #30	ENSGT00950000183059.a #31	ENSGT00940000153986.b.b #32	ENSGT00940000157743 #33	ENSGT00940000155437 #34	ENSGT00940000167144 #35	ENSGT00940000153110.B.f #36	ENSGT00940000159024 #37
Anabantoidei	ANCESTRAL SPECIES	11	ENSGT00920000149138	ENSGT00390000016876	ENSGT00950000183097.a.a.a.f.a.b #7	ENSGT00940000155374.g.b #8	ENSGT00940000164070.a	ENSGT00950000182856.a.a.b #10	ENSGT00940000177201 #11	ENSGT01090000260076.b.a #12	ENSGT00940000163421.a.d.b #13	ENSGT00950000183196.D.b #14	ENSGT00940000159795 #16	ENSGT00940000165542 #19	ENSGT00940000160487 #17	ENSGT00940000159942.b #20	ENSGT00940000160863 #21	ENSGT00950000183189.a.b.b #22	ENSGT00950000182974.a.a.a.a #23	ENSGT00940000156803 #24	ENSGT00390000003924 #25	ENSGT00940000163031.b.b #26	ENSGT00440000033329.b.a.b #27	ENSGT00390000013770 #28	ENSGT00440000033895 #29	ENSGT00390000000436 #30	ENSGT00950000183059.a #31	ENSGT00940000153986.b.b #32	ENSGT00940000157743 #33	ENSGT00940000155437 #34	ENSGT00940000167144 #35	ENSGT00940000153110.B.f #36	ENSGT00940000159024 #37
Climbing perch	MODERN SPECIES	1	PTCD3 (ENSATEG00000016950)	ENSATEG00000016988 #7	ENSATEG00000017043 #8	ENSATEG00000017091	ENSATEG00000017197 #10	ENSATEG00000028948 #11	ENSATEG00000017319	ENSATEG00000017333 #12	ENSATEG00000028361 #13	ENSATEG00000017390 #14	ENSATEG00000017460 #16	HDAC3 (ENSATEG00000025701) #17	ENSATEG00000030082 #20	ENSATEG00000027939 #20	ENSATEG00000017702 #21	fmr1 (ENSATEG00000017772) #22	ENSATEG00000017794 #23	ids (ENSATEG00000017826) #24	ENSATEG00000017854 #25	ENSATEG00000017886 #26	ENSATEG00000017941 #27	ENSATEG00000017951 #28	ENSATEG00000017964 #29	ENSATEG00000028229 #30	ENSATEG00000017987 #31	gpr137 (ENSATEG00000018018) #32	syvn1 (ENSATEG00000018027) #33	smad5 (ENSATEG00000018057) #34	ap1ar (ENSATEG00000018090) #35	ENSATEG00000030039 #36	gabra4 (ENSATEG00000026740) #37
Siamese fighting fish	MODERN SPECIES	1	hars (ENSBSLG00000010095)	ENSBSLG00000010300	gfra3 (ENSBSLG00000010612)	ENSBSLG00000010680 #9	ENSBSLG00000010699	ENSBSLG00000010714	il1rapl2 (ENSBSLG00000010846) #12	ENSBSLG00000011007	zgc:194679 (ENSBSLG00000011014) #13	ENSBSLG00000011034 #14	ENSBSLG00000011166 #16	hdac3 (ENSBSLG00000011189) #19	ENSBSLG00000011238 #20	ENSBSLG00000011248 #20	rab33a (ENSBSLG00000011275) #21	fmr1 (ENSBSLG00000011283) #22	ENSBSLG00000011329 #23	ids (ENSBSLG00000011348) #24	ENSBSLG00000011704	ENSBSLG00000011896	ENSBSLG00000011913	dcps (ENSBSLG00000011922) #25	ENSBSLG00000011942 #26	LONRF3 (ENSBSLG00000012064) #27	commd5 (ENSBSLG00000012118) #28	fam199x (ENSBSLG00000012139) #29	smim19 (ENSBSLG00000012206) #30	ENSBSLG00000012227 #31	gpr137 (ENSBSLG00000012247) #32	syvn1 (ENSBSLG00000012292) #33	smad5 (ENSBSLG00000012329) #34
Zig-zag eel	MODERN SPECIES	1	ENSMAMG00000001183	ENSMAMG00000001159	ENSMAMG00000001144	setd7 (ENSMAMG00000001118)	ENSMAMG00000001111	rab33ba (ENSMAMG00000001098)	ENSMAMG00000001081	ENSMAMG00000027954	ENSMAMG00000001046	ENSMAMG00000000970	ENSMAMG00000000926	ENSMAMG00000000912	ENSMAMG00000000893	ENSMAMG00000000865	ENSMAMG00000000825	fmr1 (ENSMAMG00000000787) #22	ENSMAMG00000000771	ENSMAMG00000000756 #23	ids (ENSMAMG00000000714) #24	ENSMAMG00000000698 #25	ENSMAMG00000000623 #26	ENSMAMG00000000589	ENSMAMG00000000565 #21	ENSMAMG00000000558 #20	ENSMAMG00000000517 #19	ENSMAMG00000000413 #16	ENSMAMG00000016851 #14	ENSMAMG00000016824 #12	ENSMAMG00000016804	ENSMAMG00000026276	ENSMAMG00000016798
Carangaria	ANCESTRAL SPECIES	15	ENSGT00920000149138	ENSGT00390000016876	ENSGT00950000183097.a.a.a.f.a.b #7	ENSGT00940000155374.g.b #8	ENSGT00940000164070.a	ENSGT00950000182856.a.a.b #10	ENSGT00940000177201 #11	ENSGT01090000260076.b.a #12	ENSGT00940000163421.a.d.b #13	ENSGT00950000183196.D.b #14	ENSGT00940000159795 #16	ENSGT00940000165542 #19	ENSGT00940000160487 #17	ENSGT00940000159942.b #20	ENSGT00940000160863 #21	ENSGT00950000183189.a.b.b #22	ENSGT00950000182974.a.a.a.a #23	ENSGT00940000156803 #24	ENSGT00390000003924 #25	ENSGT00940000163031.b.b #26	ENSGT00440000033329.b.a.b #27	ENSGT00390000013770 #28	ENSGT00440000033895 #29	ENSGT00390000000436 #30	ENSGT00950000183059.a #31	ENSGT00940000153986.b.b #32	ENSGT00940000157743 #33	ENSGT00940000155437 #34	ENSGT00940000167144 #35	ENSGT00940000153110.B.f #36	ENSGT00940000159024 #37
Carangaria_A	ANCESTRAL SPECIES	22	ENSGT00940000157929	ENSGT00920000149138	ENSGT00390000016876	ENSGT00950000183097.a.a.a.f.a.b #7	ENSGT00940000155374.g.b #8	ENSGT00940000164070.a	ENSGT00950000182856.a.a.b #10	ENSGT00940000177201 #11	ENSGT01090000260076.b.a #12	ENSGT00940000163421.a.d.b #13	ENSGT00950000183196.D.b #14	ENSGT00940000159795 #16	ENSGT00940000160487 #17	ENSGT00940000159942.b #20	ENSGT00940000160863 #21	ENSGT00950000183189.a.b.b #22	ENSGT00950000182974.a.a.a.a #23	ENSGT00940000156803 #24	ENSGT00390000003924 #25	ENSGT00940000163031.b.b #26	ENSGT00440000033329.b.a.b #27	ENSGT00390000013770 #28	ENSGT00440000033895 #29	ENSGT00390000000436 #30	ENSGT00950000183059.a #31	ENSGT00940000153986.b.b #32	ENSGT00940000157743 #33	ENSGT00940000155437 #34	ENSGT00940000167144 #35	ENSGT00940000153110.B.f #36	ENSGT00940000159024 #37
Seriola	ANCESTRAL SPECIES	22	ENSGT00940000157929	ENSGT00920000149138	ENSGT00390000016876	ENSGT00950000183097.a.a.a.f.a.b #7	ENSGT00940000155374.g.b #8	ENSGT00940000164070.a	ENSGT00950000182856.a.a.b #10	ENSGT00940000177201 #11	ENSGT01090000260076.b.a #12	ENSGT00940000163421.a.d.b #13	ENSGT00950000183196.D.b #14	ENSGT00940000159795 #16	ENSGT00940000160487 #17	ENSGT00940000159942.b #20	ENSGT00940000160863 #21	ENSGT00950000183189.a.b.b #22	ENSGT00950000182974.a.a.a.a #23	ENSGT00940000156803 #24	ENSGT00390000003924 #25	ENSGT00940000163031.b.b #26	ENSGT00440000033329.b.a.b #27	ENSGT00390000013770 #28	ENSGT00440000033895 #29	ENSGT00390000000436 #30	ENSGT00950000183059.a #31	ENSGT00940000153986.b.b #32	ENSGT00940000157743 #33	ENSGT00940000155437 #34	ENSGT00940000167144 #35	ENSGT00940000153110.B.f #36	ENSGT00940000159024 #37
Yellowtail amberjack	MODERN SPECIES	3258														ENSSLDG00000021978 #20	rab33a (ENSSLDG00000022004) #21	fmr1 (ENSSLDG00000022042) #22	ENSSLDG00000022289 #23	ENSSLDG00000022303 #23	ENSSLDG00000022327	ids (ENSSLDG00000022346) #24	dcps (ENSSLDG00000022373) #25	ENSSLDG00000022386 #26	ENSSLDG00000022437 #27	commd5 (ENSSLDG00000022461) #28	fam199x (ENSSLDG00000022488) #29	ENSSLDG00000022515 #31	smim19 (ENSSLDG00000022538) #30	gpr137 (ENSSLDG00000022550) #32	syvn1 (ENSSLDG00000022582) #33	smad5 (ENSSLDG00000022603) #34	ap1ar (ENSSLDG00000022626) #35
Greater amberjack	MODERN SPECIES	67	st3gal5 (ENSSDUG00000014689)	POLR1A (ENSSDUG00000014631)	ptcd3 (ENSSDUG00000014567)	ENSSDUG00000014516 #7	CNGA2 (ENSSDUG00000014491) #8	ENSSDUG00000014470	snx25 (ENSSDUG00000014434) #10	ENSSDUG00000014371	il1rapl2 (ENSSDUG00000014285) #12	zgc:194679 (ENSSDUG00000014233) #13	ENSSDUG00000014142 #14	ENSSDUG00000014068 #16	HDAC3 (ENSSDUG00000014029) #17	ENSSDUG00000013982 #20	rab33a (ENSSDUG00000013968) #21	fmr1 (ENSSDUG00000013947) #22	ENSSDUG00000013932 #23	ids (ENSSDUG00000013858) #24	dcps (ENSSDUG00000013850) #25	ENSSDUG00000013825 #26	ENSSDUG00000013804 #27	commd5 (ENSSDUG00000013777) #28	fam199x (ENSSDUG00000013754) #29	smim19 (ENSSDUG00000013741) #30	ENSSDUG00000013699 #31	gpr137 (ENSSDUG00000013666) #32	syvn1 (ENSSDUG00000013629) #33	smad5 (ENSSDUG00000013611) #34	ap1ar (ENSSDUG00000013561) #35	ENSSDUG00000013504 #36	gabra4 (ENSSDUG00000013478) #37
Barramundi perch	MODERN SPECIES	40		POLR1A (ENSLCAG00010026025)	ptcd3 (ENSLCAG00010026016)	PLS3 (ENSLCAG00010025924) #7	CNGA2 (ENSLCAG00010025753) #8	ENSLCAG00010025709	snx25 (ENSLCAG00010025674) #10	ENSLCAG00010025641 #11	il1rapl2 (ENSLCAG00010025622) #12	zgc:194679 (ENSLCAG00010025611) #13	ENSLCAG00010025567 #14	ENSLCAG00010025510 #16	hdac3 (ENSLCAG00010025496) #19	ENSLCAG00010025469 #20	rab33a (ENSLCAG00010025466) #21	fmr1 (ENSLCAG00010025462) #22	ENSLCAG00010025441 #23	ids (ENSLCAG00010025432) #24	dcps (ENSLCAG00010025425) #25	ENSLCAG00010025416 #26	LONRF3 (ENSLCAG00010025392) #27	commd5 (ENSLCAG00010025376) #28	fam199x (ENSLCAG00010025371) #29	smim19 (ENSLCAG00010025368) #30	ENSLCAG00010025334 #31	gpr137 (ENSLCAG00010025316) #32	syvn1 (ENSLCAG00010025294) #33	smad5 (ENSLCAG00010025270) #34	ap1ar (ENSLCAG00010025254) #35	ENSLCAG00010025244	gabra4 (ENSLCAG00010025236) #37
Pleuronectoidei	ANCESTRAL SPECIES	18	ENSGT00920000149138	ENSGT00390000016876	ENSGT00950000183097.a.a.a.f.a.b #7	ENSGT00940000155374.g.b #8	ENSGT00940000164070.a	ENSGT00950000182856.a.a.b #10	ENSGT00940000177201 #11	ENSGT01090000260076.b.a #12	ENSGT00940000163421.a.d.b #13	ENSGT00950000183196.D.b #14	ENSGT00940000159795 #16	ENSGT00940000165542 #19	ENSGT00940000160487 #17	ENSGT00940000159942.b #20	ENSGT00940000160863 #21	ENSGT00950000183189.a.b.b #22	ENSGT00950000182974.a.a.a.a #23	ENSGT00940000156803 #24	ENSGT00390000003924 #25	ENSGT00940000163031.b.b #26	ENSGT00440000033329.b.a.b #27	ENSGT00390000013770 #28	ENSGT00440000033895 #29	ENSGT00390000000436 #30	ENSGT00950000183059.a #31	ENSGT00940000153986.b.b #32	ENSGT00940000157743 #33	ENSGT00940000155437 #34	ENSGT00940000167144 #35	ENSGT00940000153110.B.f #36	ENSGT00940000159024 #37
Tongue sole	MODERN SPECIES	6	dctn4 (ENSCSEG00000016071)	ENSCSEG00000016132	ENSCSEG00000016140	tspan17 (ENSCSEG00000016149)	ctnna1 (ENSCSEG00000016166)	ENSCSEG00000016183	LRRTM2 (ENSCSEG00000016191)	sncb (ENSCSEG00000016200)	ENSCSEG00000016209	ENSCSEG00000016212	ENSCSEG00000016220	HDAC3 (ENSCSEG00000016239) #17	ENSCSEG00000016269 #20	ENSCSEG00000016279 #20	rab33a (ENSCSEG00000016284) #21	fmr1 (ENSCSEG00000016308) #22	ENSCSEG00000016434 #23	ids (ENSCSEG00000016791) #24	dcps (ENSCSEG00000016877) #25	dcps (ENSCSEG00000016894) #25	ENSCSEG00000016912 #26	fnta (ENSCSEG00000016931)	aup1 (ENSCSEG00000016943)	ctsf (ENSCSEG00000016954)	eif1ad (ENSCSEG00000016964)	ENSCSEG00000016970	ENSCSEG00000016971	nrg2b (ENSCSEG00000016983)	PURA (ENSCSEG00000017000)	PSD2 (ENSCSEG00000017007)	ENSCSEG00000017037
Turbot	MODERN SPECIES	4	ACSL1 (ENSSMAG00000014521)	ST3GAL5 (ENSSMAG00000014487)	ENSSMAG00000014342	PTCD3 (ENSSMAG00000014274)	ENSSMAG00000014188 #7	ENSSMAG00000014170 #8	ENSSMAG00000014164	ENSSMAG00000014099 #10	ENSSMAG00000013972 #12	ENSSMAG00000036602 #13	ENSSMAG00000013900 #14	ENSSMAG00000013862 #16	ENSSMAG00000013850 #19	ENSSMAG00000013738 #20	ENSSMAG00000021788 #21	fmr1 (ENSSMAG00000013698) #22	ENSSMAG00000013634 #23	ids (ENSSMAG00000013609) #24	ENSSMAG00000013606 #25	ENSSMAG00000013564 #26	ENSSMAG00000013535 #27	ENSSMAG00000013514 #28	ENSSMAG00000013495 #29	ENSSMAG00000013482 #30	ENSSMAG00000013306 #31	gpr137 (ENSSMAG00000013297) #32	syvn1 (ENSSMAG00000013258) #33	smad5 (ENSSMAG00000013242) #34	ap1ar (ENSSMAG00000034216) #35	ENSSMAG00000013203 #36	gabra4 (ENSSMAG00000013192) #37
Tiger tail seahorse	MODERN SPECIES	332	zgc:110843 (ENSHCOG00000004414)	ENSHCOG00000004422	zgc:92242 (ENSHCOG00000004430)	PSD2 (ENSHCOG00000004461)	PURA (ENSHCOG00000004472)	nrg2b (ENSHCOG00000004500)	il1rapl2 (ENSHCOG00000004538) #12	ENSHCOG00000004555 ##14	ENSHCOG00000004573 #14	ENSHCOG00000004585 #16	HDAC3 (ENSHCOG00000004619) #17	ENSHCOG00000004625	ENSHCOG00000004629 #20	ENSHCOG00000004665	rab33a (ENSHCOG00000004726) #21	fmr1 (ENSHCOG00000004757) #22	ENSHCOG00000004775	AFF2 (ENSHCOG00000004812) #23	dcps (ENSHCOG00000004819) #25	ids (ENSHCOG00000004861) #24	ENSHCOG00000004894 #26	apln (ENSHCOG00000004906)	xpnpep2 (ENSHCOG00000004944)	SASH3 (ENSHCOG00000004974)	zdhhc9 (ENSHCOG00000000130)	trmt12 (ENSHCOG00000005050)	sytl4 (ENSHCOG00000005074)	SRPX2 (ENSHCOG00000005080)	tspan7 (ENSHCOG00000005093)	ENSHCOG00000005140	cstf2 (ENSHCOG00000005157)
Pinecone sodierfish	MODERN SPECIES	1	ENSMMDG00005008909	CTNND1 (ENSMMDG00005008920)	ENSMMDG00005008998	SLC43A3 (ENSMMDG00005009002)	snx25 (ENSMMDG00005009059) #10	ENSMMDG00005010587 #11	il1rapl2 (ENSMMDG00005010594) #12	zgc:194679 (ENSMMDG00005010603) #13	ENSMMDG00005010606 #14	ENSMMDG00005010608 #14	ENSMMDG00005010611 #16	hdac3 (ENSMMDG00005010654) #19	ENSMMDG00005013824 #18	ENSMMDG00005013827 #20	rab33a (ENSMMDG00005013829) #21	fmr1 (ENSMMDG00005013835) #22	ENSMMDG00005014115 #23	ENSMMDG00005014122	ENSMMDG00005014123	ids (ENSMMDG00005014128) #24	dcps (ENSMMDG00005014137) #25	ENSMMDG00005014148 #26	LONRF3 (ENSMMDG00005014152) #27	commd5 (ENSMMDG00005014157) #28	fam199x (ENSMMDG00005014162) #29	smim19 (ENSMMDG00005014171) #30	ENSMMDG00005014172	ENSMMDG00005014174 #31	gpr137 (ENSMMDG00005014176) #32	syvn1 (ENSMMDG00005014181) #33	smad5 (ENSMMDG00005014191) #34
Cod	MODERN SPECIES	1	ENSGMOG00000033721	CASP3 (ENSGMOG00000016710)	CASP3 (ENSGMOG00000035959)	CASP3 (ENSGMOG00000033551)	irf2 (ENSGMOG00000016692)	snx25 (ENSGMOG00000005477) #10	ENSGMOG00000036878 #11	ENSGMOG00000002901 #12	ENSGMOG00000036718 #13	ENSGMOG00000001600 #14	ENSGMOG00000001585 #16	ENSGMOG00000001416 #19	ENSGMOG00000031581 #20	ENSGMOG00000006189 #20	ENSGMOG00000036873 #21	fmr1 (ENSGMOG00000006141) #22	ENSGMOG00000006067 #23	ids (ENSGMOG00000006046) #24	ENSGMOG00000006034 #25	ENSGMOG00000033793 #26	ENSGMOG00000028898 #27	ENSGMOG00000005916 #28	ENSGMOG00000005900 #29	ENSGMOG00000005892 #30	ENSGMOG00000005860 #31	gpr137 (ENSGMOG00000005840) #32	syvn1 (ENSGMOG00000005799) #33	smad5 (ENSGMOG00000005788) #34	ap1ar (ENSGMOG00000005772) #35	gabra4 (ENSGMOG00000005750) #37	ENSGMOG00000005730
Salmoninae	DUPLICATION
Salmoninae	ANCESTRAL SPECIES	51	ENSGT00940000164256	ENSGT00940000153203.B.j	ENSGT00940000157061.a.d	ENSGT00940000159900.c	ENSGT00740000115581.f	ENSGT00940000156736.c.a.a.b	ENSGT00390000010318.hc.b	ENSGT00940000157217.f	ENSGT00390000011725.c	ENSGT00940000160863.c.b #21	ENSGT01000000220275	ENSGT00940000160863.d #21	ENSGT00940000159942.b #20	ENSGT00940000160971.f	ENSGT00940000161248.i	ENSGT00950000183189.a.b.b.e #22	ENSGT00950000182974.a.a.a.a.y.b #23	ENSGT00940000156803.n #24	ENSGT00940000163031.b.b.d #26	ENSGT00440000033329.b.a.b.f #27	ENSGT00390000013770 #28	ENSGT00440000033895.a #29	ENSGT00940000160633.b	ENSGT01090000260076.b.a.j #12	ENSGT00950000183196.D.b.i #14	ENSGT00940000159795.f #16	ENSGT00940000165542.b #19	ENSGT00940000160487 #17	ENSGT00940000160541.f	ENSGT00510000046732.B	ENSGT00920000149123.d.h.a
Salmoninae_a	ANCESTRAL SPECIES	41	ENSGT00940000164256	ENSGT00940000153203.B.j	ENSGT00940000157061.a.d	ENSGT00940000159900.c	ENSGT00740000115581.f	ENSGT00940000156736.c.a.a.b	ENSGT00390000010318.hc.b	ENSGT00940000157217.f	ENSGT00390000011725.c	ENSGT00940000160863.c.b #21	ENSGT01000000220275	ENSGT00940000160863.d #21	ENSGT00940000159942.b #20	ENSGT00940000160971.f	ENSGT00940000161248.i	ENSGT00950000183189.a.b.b.e #22	ENSGT00950000182974.a.a.a.a.y.b #23	ENSGT00940000156803.n #24	ENSGT00940000163031.b.b.d #26	ENSGT00440000033329.b.a.b.f #27	ENSGT00390000013770 #28	ENSGT00440000033895.a #29	ENSGT00940000160633.b.b	ENSGT01090000260076.b.a.j #12	ENSGT00950000183196.D.b.i #14	ENSGT00940000159795.f #16	ENSGT00940000165542.b #19	ENSGT00940000160487 #17	ENSGT00940000160541.f	ENSGT00510000046732.B	ENSGT00920000149123.d.h.a
Atlantic salmon	MODERN SPECIES	28	MAEA (ENSSSAG00000063575)	ctbp1 (ENSSSAG00000061710)	spon2b (ENSSSAG00000061591)	ENSSSAG00000061545	rnf212 (ENSSSAG00000061518)	ENSSSAG00000108010	fgfrl1a (ENSSSAG00000107638)	RNF4 (ENSSSAG00000061334)	ENSSSAG00000061218	selenot2 (ENSSSAG00000061169)	rab33a (ENSSSAG00000088432) #21	ENSSSAG00000060952 #20	SLITRK4 (ENSSSAG00000119723)	ENSSSAG00000085205	SLITRK2 (ENSSSAG00000060866)	fmr1 (ENSSSAG00000057413) #22	AFF2 (ENSSSAG00000057351) #23	ids (ENSSSAG00000106445) #24	ENSSSAG00000084630	zgc:66433 (ENSSSAG00000057295) #26	ENSSSAG00000057147 #27	commd5 (ENSSSAG00000057116) #28	ENSSSAG00000057087	fam199x (ENSSSAG00000108796) #29	ENSSSAG00000104195	ENSSSAG00000057079 #12	ENSSSAG00000053042 #14	ENSSSAG00000054712 #16	hdac3 (ENSSSAG00000054212) #17	ENSSSAG00000111372	fchsd1 (ENSSSAG00000054146)
Oncorhynchus_a	ANCESTRAL SPECIES	34	ENSGT00940000157944.f	ENSGT00940000162861.q	ENSGT00940000164256	ENSGT00940000153203.B.j	ENSGT00940000157061.a.d	ENSGT00940000159900.c	ENSGT00740000115581.f	ENSGT00940000156736.c.a.a.b	ENSGT00390000010318.hc.b	ENSGT00940000157217.f	ENSGT00390000011725.c	ENSGT00940000160863.c.b #21	ENSGT00940000159942.b #20	ENSGT00940000160971.f	ENSGT00940000161248.i	ENSGT00950000183189.a.b.b.e #22	ENSGT00950000182974.a.a.a.a.y.b #23	ENSGT00940000156803.n #24	ENSGT00940000163031.b.b.d #26	ENSGT00440000033329.b.a.b.f #27	ENSGT00390000013770 #28	ENSGT00440000033895.a #29	ENSGT00940000160633.b.b	ENSGT01090000260076.b.a.j #12	ENSGT00950000183196.D.b.i #14	ENSGT00940000159795.f #16	ENSGT00940000165542.b #19	ENSGT00940000160541.f	ENSGT00510000046732.B	ENSGT00920000149123.d.h.a	ENSGT00940000156736.d.b.a.a
Chinook salmon	MODERN SPECIES	32	ALDH3A2 (ENSOTSG00005046535)	nkx1.2lb (ENSOTSG00005046538)	uvssa (ENSOTSG00005046539)	maea (ENSOTSG00005046540)	zgc:136929 (ENSOTSG00005046542)	spon2b (ENSOTSG00005046550)	ENSOTSG00005046552	fgfrl1a (ENSOTSG00005046554)	rnf4 (ENSOTSG00005046557)	ENSOTSG00005046558	selenot2 (ENSOTSG00005046561)	rab33a (ENSOTSG00005046562) #21	ENSOTSG00005046564 #20	SLITRK4 (ENSOTSG00005046571)	SLITRK2 (ENSOTSG00005046572)	fmr1 (ENSOTSG00005008784) #22	ENSOTSG00005008931 #23	AFF2 (ENSOTSG00005008933) #23	ids (ENSOTSG00005008935) #24	zgc:66433 (ENSOTSG00005008939) #26	ENSOTSG00005008942 #27	commd5 (ENSOTSG00005008944) #28	fam199x (ENSOTSG00005008951) #29	ENSOTSG00005008954	il1rapl2 (ENSOTSG00005008955) #12	ENSOTSG00005008960 #14	ENSOTSG00005008962 #16	hdac3 (ENSOTSG00005008964) #19	rell2 (ENSOTSG00005008980)	ENSOTSG00005008982	hspa9 (ENSOTSG00005008985)
Coho salmon	MODERN SPECIES	6	nkx1.2lb (ENSOKIG00005019786)	uvssa (ENSOKIG00005019793)	maea (ENSOKIG00005019815)	zgc:136929 (ENSOKIG00005019874)	spon2b (ENSOKIG00005020009)	ENSOKIG00005020022	fgfrl1a (ENSOKIG00005020056)	rnf4 (ENSOKIG00005020091)	ENSOKIG00005020165	selenot2 (ENSOKIG00005020218)	rab33a (ENSOKIG00005020233) #21	ENSOKIG00005020256 #20	SLITRK4 (ENSOKIG00005020401)	ENSOKIG00005020410	SLITRK2 (ENSOKIG00005020417)	fmr1 (ENSOKIG00005020470) #22	AFF2 (ENSOKIG00005020969) #23	ids (ENSOKIG00005021043) #24	zgc:66433 (ENSOKIG00005021098) #26	LONRF3 (ENSOKIG00005021136) #27	commd5 (ENSOKIG00005021144) #28	fam199x (ENSOKIG00005021158) #29	ENSOKIG00005021187	IL1RAPL2 (ENSOKIG00005021197) #12	ENSOKIG00005021208	ENSOKIG00005021235 #14	ENSOKIG00005021378 #16	hdac3 (ENSOKIG00005021415) #19	ENSOKIG00005021609	ENSOKIG00005021639	hspa9 (ENSOKIG00005021687)
Huchen	MODERN SPECIES	760																fmr1 (ENSHHUG00000014903) #22	ENSHHUG00000015971 #23	ENSHHUG00000015976 #23	ENSHHUG00000015980 ##23	ids (ENSHHUG00000015984) #24	zgc:66433 (ENSHHUG00000015998) #26	ENSHHUG00000016023 #27	ENSHHUG00000016029	commd5 (ENSHHUG00000016035) #28	fam199x (ENSHHUG00000016044) #29
Salmoninae	ANCESTRAL SPECIES	320													ENSGT00940000160863.c.a #21	ENSGT00940000160971.e	ENSGT00940000161248.j	ENSGT00950000183189.a.b.b.f #22	ENSGT00950000182974.a.a.a.a.y.a #23	ENSGT00940000156803.m #24	ENSGT00390000017614.f	ENSGT00940000163031.b.b.c #26	ENSGT00440000033329.b.a.b.e #27	ENSGT00440000033895.b #29	ENSGT01090000260076.b.a.i #12	ENSGT00950000183196.D.b.j #14	ENSGT00940000159795.e #16	ENSGT00940000165542.a #19	ENSGT00940000160541.e	ENSGT00920000149123.d.h.b	ENSGT00940000156736.d.a	ENSGT00390000013163.g	ENSGT00940000153700.e
Salmoninae_a	ANCESTRAL SPECIES	12	ENSGT00520000055589.d.a.a.d	ENSGT00940000163251.b	ENSGT00990000210158	ENSGT00940000161151.c	ENSGT00390000008738.b	ENSGT00940000162861.r	ENSGT00940000153203.B.i	ENSGT00940000157061.a.c	ENSGT00940000159900.d	ENSGT00940000160999	ENSGT00940000156736.c.a.a.a	ENSGT00390000010318.hc.a	ENSGT00940000160863.c.a #21	ENSGT00940000160971.e	ENSGT00940000161248.j	ENSGT00950000183189.a.b.b.f #22	ENSGT00950000182974.a.a.a.a.y.a #23	ENSGT00940000156803.m #24	ENSGT00390000017614.f	ENSGT00940000163031.b.b.c #26	ENSGT00440000033329.b.a.b.e #27	ENSGT00440000033895.b #29	ENSGT00940000160633.b.a	ENSGT01090000260076.b.a.i #12	ENSGT00950000183196.D.b.j #14	ENSGT00940000159795.e #16	ENSGT00940000165542.a #19	ENSGT00940000160541.e	ENSGT00920000149123.d.h.b	ENSGT00940000156736.d.a	ENSGT00390000013163.g
Salmo	ANCESTRAL SPECIES	1	ENSGT00940000157999.h	ENSGT00940000157999.g.b	ENSGT00520000055589.d.a.a.d	ENSGT00940000163251.b	ENSGT00990000210158	ENSGT00940000162861.r	ENSGT00940000153203.B.i	ENSGT00940000157061.a.c	ENSGT00940000159900.d	ENSGT00940000160999	ENSGT00940000156736.c.a.a.a	ENSGT00390000010318.hc.a	ENSGT00940000160863.c.a #21	ENSGT00940000160971.e	ENSGT00940000161248.j	ENSGT00950000183189.a.b.b.f #22	ENSGT00950000182974.a.a.a.a.y.a #23	ENSGT00940000156803.m #24	ENSGT00390000017614.f	ENSGT00940000163031.b.b.c #26	ENSGT00440000033329.b.a.b.e #27	ENSGT00440000033895.b #29	ENSGT01090000260076.b.a.i #12	ENSGT00950000183196.D.b.j #14	ENSGT00940000159795.e #16	ENSGT00940000165542.a #19	ENSGT00940000160541.e	ENSGT00920000149123.d.h.b	ENSGT00940000156736.d.a	ENSGT00390000013163.g	ENSGT00940000153700.e
Atlantic salmon	MODERN SPECIES	24	ENSSSAG00000060466	NKX1-1 (ENSSSAG00000107264)	ENSSSAG00000121521	MAEA (ENSSSAG00000060987)	CTBP1 (ENSSSAG00000104678)	spon2b (ENSSSAG00000060717)	ENSSSAG00000112004	ENSSSAG00000117344	fgfrl1a (ENSSSAG00000061433)	rnf4 (ENSSSAG00000053661)	rab33a (ENSSSAG00000110778) #21	ENSSSAG00000081652	ENSSSAG00000081901	SLITRK4 (ENSSSAG00000060876)	ENSSSAG00000082993	fmr1 (ENSSSAG00000053722) #22	AFF2 (ENSSSAG00000053621) #23	ids (ENSSSAG00000053581) #24	lygl2 (ENSSSAG00000053544)	zgc:66433 (ENSSSAG00000053506) #26	lonrf3 (ENSSSAG00000053472) #27	fam199x (ENSSSAG00000053452) #29	ENSSSAG00000053419 #12	ENSSSAG00000054771 #14	ENSSSAG00000052986 #16	ENSSSAG00000052932 #19	ENSSSAG00000052912	ENSSSAG00000047960	ENSSSAG00000047900	fbxo38 (ENSSSAG00000047516)	csnk1a1 (ENSSSAG00000047433)
River trout	MODERN SPECIES	22	SCMH1 (ENSSTUG00000045433)	STOX2 (ENSSTUG00000045419)	ENSSTUG00000045391	ENSSTUG00000045382	nkx1.2lb (ENSSTUG00000045379)	maea (ENSSTUG00000045345)	zgc:136929 (ENSSTUG00000045200)	ENSSTUG00000045075	fgfrl1a (ENSSTUG00000045030)	rnf4 (ENSSTUG00000045007)	rab33a (ENSSTUG00000044991) #21	ENSSTUG00000044981	SLITRK4 (ENSSTUG00000044976)	ENSSTUG00000044970	SLITRK2 (ENSSTUG00000044950)	fmr1 (ENSSTUG00000043467) #22	AFF2 (ENSSTUG00000043367) #23	zgc:162941 (ENSSTUG00000043310)	zgc:66433 (ENSSTUG00000043232) #26	LONRF3 (ENSSTUG00000043209) #27	ENSSTUG00000043207	fam199x (ENSSTUG00000043150) #29	il1rapl2 (ENSSTUG00000043062) #12	ENSSTUG00000043050	ENSSTUG00000042915 #14	ENSSTUG00000042842 #16	hdac3 (ENSSTUG00000042642) #19	ENSSTUG00000042612	hspa9 (ENSSTUG00000039509)	fgfrl1b (ENSSTUG00000039436)	FBXO38 (ENSSTUG00000039245)
Oncorhynchus	ANCESTRAL SPECIES	18	ENSGT00520000055589.d.a.a.d	ENSGT00940000163251.b	ENSGT00990000210158	ENSGT00940000161151.c	ENSGT00390000008738.b	ENSGT00940000162861.r	ENSGT00940000153203.B.i	ENSGT00940000157061.a.c	ENSGT00940000159900.d	ENSGT00940000160999	ENSGT00940000156736.c.a.a.a	ENSGT00390000010318.hc.a	ENSGT00940000160863.c.a #21	ENSGT00940000160971.e	ENSGT00940000161248.j	ENSGT00950000183189.a.b.b.f #22	ENSGT00950000182974.a.a.a.a.y.a #23	ENSGT00940000156803.m #24	ENSGT00390000017614.f	ENSGT00940000163031.b.b.c #26	ENSGT00440000033329.b.a.b.e #27	ENSGT00440000033895.b #29	ENSGT00940000160633.b.a	ENSGT01090000260076.b.a.i #12	ENSGT00950000183196.D.b.j #14	ENSGT00940000159795.e #16	ENSGT00940000165542.a #19	ENSGT00940000160541.e	ENSGT00920000149123.d.h.b	ENSGT00940000156736.d.a	ENSGT00390000013163.g
Chinook salmon	MODERN SPECIES	13	spdl1 (ENSOTSG00005040217)	STOX2 (ENSOTSG00005040216)	ENSOTSG00005040211	ENSOTSG00005040210	SLBP (ENSOTSG00005040205)	nkx1.2lb (ENSOTSG00005040201)	maea (ENSOTSG00005040200)	zgc:136929 (ENSOTSG00005038259)	spon2b (ENSOTSG00005038249)	ENSOTSG00005038247	fgfrl1a (ENSOTSG00005038243)	rnf4 (ENSOTSG00005038241)	rab33a (ENSOTSG00005038238) #21	SLITRK4 (ENSOTSG00005038237)	SLITRK2 (ENSOTSG00005038236)	fmr1 (ENSOTSG00005035496) #22	ENSOTSG00005035482 #23	ids (ENSOTSG00005035481) #24	lygl2 (ENSOTSG00005035480)	zgc:66433 (ENSOTSG00005035479) #26	LONRF3 (ENSOTSG00005035425) #27	fam199x (ENSOTSG00005035413) #29	ENSOTSG00005035405	il1rapl2 (ENSOTSG00005035398) #12	ENSOTSG00005035395 #14	ENSOTSG00005035393 #16	hdac3 (ENSOTSG00005034802) #19	rell2 (ENSOTSG00005034799)	hspa9 (ENSOTSG00005029601)	fgfrl1b (ENSOTSG00005029587)	FBXO38 (ENSOTSG00005029578)
Rainbow trout	MODERN SPECIES	5		ENSOMYG00000007736	ENSOMYG00000063557	ENSOMYG00000005054	SLBP (ENSOMYG00000004989)	NKX1-1 (ENSOMYG00000053085)	ENSOMYG00000055328	MAEA (ENSOMYG00000007812)	zgc:136929 (ENSOMYG00000016914)	ENSOMYG00000029569	fgfrl1a (ENSOMYG00000009537)	rnf4 (ENSOMYG00000009581)	rab33a (ENSOMYG00000045025) #21	SLITRK4 (ENSOMYG00000009631)	SLITRK2 (ENSOMYG00000009670)	fmr1 (ENSOMYG00000010284) #22	AFF2 (ENSOMYG00000012416) #23	ids (ENSOMYG00000012432) #24	ENSOMYG00000006880	lygl2 (ENSOMYG00000012460)	zgc:66433 (ENSOMYG00000012500) #26	ENSOMYG00000058948	ENSOMYG00000012538 #27	fam199x (ENSOMYG00000012581) #29	ENSOMYG00000056565	ENSOMYG00000012626 #12	ENSOMYG00000012713 #14	ENSOMYG00000051071	ENSOMYG00000012746 #16	ENSOMYG00000012808 #19	ENSOMYG00000013014
Huchen	MODERN SPECIES	372																fmr1 (ENSHHUG00000030736) #22	ENSHHUG00000031371 #23	ENSHHUG00000031385 #23	ENSHHUG00000031389 #24	ENSHHUG00000031400	lygl2 (ENSHHUG00000031408)	zgc:66433 (ENSHHUG00000031428) #26	LONRF3 (ENSHHUG00000031469) #27	fam199x (ENSHHUG00000031481) #29	ENSHHUG00000031494
Northern pike	MODERN SPECIES	3	maea (ENSELUG00000012979)	zgc:136929 (ENSELUG00000013004)	spon2b (ENSELUG00000013048)	ENSELUG00000013013	RNF212 (ENSELUG00000013082)	fgfrl1a (ENSELUG00000013111)	rnf4 (ENSELUG00000013137)	ENSELUG00000013200	selenot2 (ENSELUG00000013172)	ENSELUG00000033341	rab33a (ENSELUG00000013219) #21	ENSELUG00000013269 #20	SLITRK4 (ENSELUG00000000480)	ENSELUG00000029184	SLITRK2 (ENSELUG00000000481)	fmr1 (ENSELUG00000013325) #22	ENSELUG00000032255	AFF2 (ENSELUG00000013368) #23	ids (ENSELUG00000013417) #24	lyg2 (ENSELUG00000030629)	zgc:66433 (ENSELUG00000013531) #26	LONRF3 (ENSELUG00000013594) #27	commd5 (ENSELUG00000013602) #28	fam199x (ENSELUG00000013618) #29	il1rapl2 (ENSELUG00000013734) #12	ENSELUG00000013868 #14	ENSELUG00000013931 #16	hdac3 (ENSELUG00000013991) #19	ENSELUG00000014038	ENSELUG00000014087	hspa9 (ENSELUG00000014148)
Otomorpha	ANCESTRAL SPECIES	310	ENSGT00940000164256	ENSGT00940000153203.B	ENSGT00940000157061.a	ENSGT00940000159900	ENSGT00940000160999	ENSGT00740000115581.f	ENSGT00940000156736.c.a	ENSGT00390000010318	ENSGT00390000011725.c	ENSGT01000000220275	ENSGT00940000160863 #21	ENSGT00940000159942.b #20	ENSGT00940000162571.c.b #18	ENSGT00940000160971	ENSGT00940000161248	ENSGT00950000183189.a.b.b #22	ENSGT00950000182974.a.a.a.a #23	ENSGT00940000156803 #24	ENSGT00390000017614.f	ENSGT00940000163031.b.b #26
Otophysi	ANCESTRAL SPECIES	10	ENSGT00940000158505.n.a	ENSGT00940000153713.B.c	ENSGT00390000016928.d	ENSGT00940000159900	ENSGT00940000160999	ENSGT00740000115581.f	ENSGT00940000156736.c.a	ENSGT00390000010318	ENSGT00390000011725.c	ENSGT01000000220275	ENSGT00940000160863 #21	ENSGT00940000159942.b #20	ENSGT00940000162571.c.a #18	ENSGT00940000160971	ENSGT00940000161248	ENSGT00950000183189.a.b.b #22	ENSGT00950000182974.a.a.a.a #23	ENSGT00940000156803 #24	ENSGT00390000017614.f	ENSGT00940000163031.b.b #26	ENSGT00510000052596.a	ENSGT00390000002866.b	ENSGT00950000182987.c.b	ENSGT00390000001610.c.a	ENSGT00940000153203.B	ENSGT00940000157061.a	ENSGT00950000182864.a.b.b.a.b.a.a.a.b.f	ENSGT00390000015138	ENSGT00390000000436 #30	ENSGT00940000165075.a.b	ENSGT00940000160001
Characiphysae_b	ANCESTRAL SPECIES	16	ENSGT00940000158505.n.a	ENSGT00940000153713.B.c	ENSGT00390000016928.d	ENSGT00940000159900	ENSGT00940000160999	ENSGT00740000115581.f	ENSGT00940000156736.c.a	ENSGT00390000010318	ENSGT00390000011725.c	ENSGT01000000220275	ENSGT00940000160863 #21	ENSGT00940000159942.b #20	ENSGT00940000162571.c.a #18	ENSGT00940000160971	ENSGT00940000161248	ENSGT00950000183189.a.b.b #22	ENSGT00950000182974.a.a.a.a #23	ENSGT00940000156803 #24	ENSGT00390000017614.f.d.b.b	ENSGT00390000017614.f.d.a	ENSGT00940000163031.b.b #26	ENSGT00510000052596.a	ENSGT00390000002866.b	ENSGT00950000182987.c.b	ENSGT00390000001610.c.a	ENSGT00940000153203.B	ENSGT00940000157061.a	ENSGT00950000182864.a.b.b.a.b.a.a.a.b.f	ENSGT00390000015138.g	ENSGT00390000000436 #30	ENSGT00940000165075.a.b
Characoidei	ANCESTRAL SPECIES	56														ENSGT00940000160971	ENSGT00940000161248	ENSGT00950000183189.a.b.b #22	ENSGT00950000182974.a.a.a.a #23	ENSGT00940000156803 #24	ENSGT00390000017614.f.d.b.a.a	ENSGT00390000017614.f.d.a	ENSGT00940000163031.b.b #26	ENSGT00510000052596.a	ENSGT00390000002866.b	ENSGT00950000182987.c.b	ENSGT00940000153203.B	ENSGT00940000157061.a	ENSGT00950000182864.a.b.b.a.b.a.a.a.b.f	ENSGT00390000015138.g	ENSGT00390000000436 #30	ENSGT00940000165075.a.b	ENSGT00940000160001
Channel catfish	MODERN SPECIES	27	ENSIPUG00000014107	ENSIPUG00000014121	uba2 (ENSIPUG00000014137)	Ca5b (ENSIPUG00000014223)	ENSIPUG00000014249	slc7a5 (ENSIPUG00000014258)	rab33a (ENSIPUG00000014269) #21	ENSIPUG00000014278 #20	ENSIPUG00000014301	ENSIPUG00000014324	slitrk4 (ENSIPUG00000014335)	ENSIPUG00000014356	ENSIPUG00000014360	SLITRK2 (ENSIPUG00000014371)	ENSIPUG00000014381	fmr1 (ENSIPUG00000014418) #22	aff2 (ENSIPUG00000014592) #23	ids (ENSIPUG00000014634) #24	zgc:162941 (ENSIPUG00000014678)	ENSIPUG00000014688	lyg (ENSIPUG00000014738)	ENSIPUG00000014786	zgc:66433 (ENSIPUG00000014794) #26	tmem109 (ENSIPUG00000014844)	rnf20 (ENSIPUG00000014855)	aldob (ENSIPUG00000014950)	maea (ENSIPUG00000014995)	zgc:136929 (ENSIPUG00000015060)	ENSIPUG00000015109	si:ch211-175m2.5 (ENSIPUG00000015136)	smim19 (ENSIPUG00000015149) #30
Cyprininae	ANCESTRAL SPECIES	558								ENSGT00940000157622.b	ENSGT00940000158505.n.a.e	ENSGT00940000153713.B.c.v	ENSGT00390000016928.d.e	ENSGT00940000159900.a	ENSGT00940000160971.d	ENSGT00940000161248.m	ENSGT00940000161248.n	ENSGT00950000183189.a.b.b.c #22	ENSGT00950000182974.a.a.a.a.r #23	ENSGT00940000156803.l #24	ENSGT00390000017614.f.b	ENSGT00390000017614.f.a.a.b.a	ENSGT00390000017614.f.a.b	ENSGT00390000017614.f.a.a.a.b	ENSGT00940000163031.b.b.b #26	ENSGT00940000158095.i	ENSGT00940000160001.c.b	ENSGT00940000165075.a.b.e
Cyprininae_a	ANCESTRAL SPECIES	536													ENSGT00940000160971.d	ENSGT00940000161248.m	ENSGT00940000161248.n	ENSGT00950000183189.a.b.b.c #22	ENSGT00950000182974.a.a.a.a.r #23	ENSGT00940000156803.l #24	ENSGT00390000017614.f.b	ENSGT00390000017614.f.a.a.b.a	ENSGT00390000017614.f.a.b	ENSGT00940000163031.b.b.b #26	ENSGT00940000158095.i	ENSGT00940000160001.c.b	ENSGT00940000165075.a.b.e
Golden-line barbel	MODERN SPECIES	101															SLITRK2 (ENSSGRG00000007432)	fmr1 (ENSSGRG00000004797) #22	ENSSGRG00000004687 #23	ids (ENSSGRG00000004656) #24	zgc:162941 (ENSSGRG00000004654)	lygl1 (ENSSGRG00000004651)	zgc:162941 (ENSSGRG00000004648)	zgc:66433 (ENSSGRG00000004643) #26	ENSSGRG00000002515	reep2 (ENSSGRG00000002442)	egr1 (ENSSGRG00000002441)	smim19 (ENSSGRG00000002439) #30	si:ch211-175m2.5 (ENSSGRG00000002432)	ENSSGRG00000001008	maea (ENSSGRG00000000963)	ENSSGRG00000000953	aldob (ENSSGRG00000000952)
Common carp reference	MODERN SPECIES	35	rtn4rl2b (ENSCCRG00000020977)	ENSCCRG00000081190	ENSCCRG00000008359	spon2b (ENSCCRG00000020179)	ENSCCRG00000020172	fgfrl1a (ENSCCRG00000077649)	rnf4 (ENSCCRG00000076111)	rab33a (ENSCCRG00000072645) #21	ENSCCRG00000079806 #20	ENSCCRG00000062378	SLITRK4 (ENSCCRG00000022737)	ENSCCRG00000058986	SLITRK2 (ENSCCRG00000051881)	ENSCCRG00000079067	ENSCCRG00000076548	fmr1 (ENSCCRG00000023048) #22	ENSCCRG00000057327	AFF2 (ENSCCRG00000079468) #23	ENSCCRG00000038125	ids (ENSCCRG00000062369) #24	lygl2 (ENSCCRG00000034559)	lygl2 (ENSCCRG00000034470)	ENSCCRG00000004168	zgc:162941 (ENSCCRG00000082912)	lygl2 (ENSCCRG00000022590)	zgc:66433 (ENSCCRG00000072558) #26	ENSCCRG00000058407	ENSCCRG00000016619	reep2 (ENSCCRG00000016567)	egr1 (ENSCCRG00000040299)	si:ch211-175m2.5 (ENSCCRG00000082692)
Goldfish	MODERN SPECIES	5	ENSCARG00000022178	fgfrl1a (ENSCARG00000022187)	rnf4 (ENSCARG00000022205)	selenot2 (ENSCARG00000022212)	rab33a (ENSCARG00000022217) #21	ENSCARG00000022223 #20	ENSCARG00000022230 #20	ENSCARG00000022262	ENSCARG00000022273	ENSCARG00000022279	ENSCARG00000022284	SLITRK4 (ENSCARG00000022287)	ENSCARG00000022293	SLITRK2 (ENSCARG00000022296)	ENSCARG00000022298	fmr1 (ENSCARG00000022335) #22	AFF2 (ENSCARG00000023943) #23	fndc5b (ENSCARG00000023975)	ldlrap1a (ENSCARG00000024042)	maco1a (ENSCARG00000024071)	srfbp1 (ENSCARG00000024117)	e2f3 (ENSCARG00000024121)	ENSCARG00000024139	SOX4 (ENSCARG00000024144)	ENSCARG00000001947	ENSCARG00000002010	sqstm1 (ENSCARG00000002079)	mgat4b (ENSCARG00000002195)	ENSCARG00000002322	canx (ENSCARG00000002333)	MAML1 (ENSCARG00000002416)
Cyprininae	ANCESTRAL SPECIES	385	ENSGT00940000159958.d.b	ENSGT00940000158505.n.a.f	ENSGT00940000153713.B.c.u	ENSGT00390000016928.d.f	ENSGT00940000159900.b	ENSGT00940000160999.c.b	ENSGT00940000160999.c.a.a.a	ENSGT00740000115581.f	ENSGT00940000156736.c.a.g.b	ENSGT00390000010318	ENSGT00390000011725.c.a	ENSGT00940000160863.b #21	ENSGT00940000159942.b.c #20	ENSGT00940000162571.c.a #18	ENSGT00940000160971.c	ENSGT00950000183189.a.b.b.d #22	ENSGT00950000182974.a.a.a.a.q.a #23	ENSGT00940000156803.k #24	ENSGT00390000017614.f.a.a.a.a	ENSGT00940000163031.b.b.a #26	ENSGT00510000052596.a.f	ENSGT00390000002866.b.m.a	ENSGT00950000182987.c.b.b	ENSGT00940000153203.B.g	ENSGT00940000157061.a.a.a	ENSGT00950000182864.a.b.b.a.b.a.a.a.b.f.a	ENSGT00390000015138.f
Cyprininae_a	ANCESTRAL SPECIES	570																ENSGT00950000183189.a.b.b.d #22	ENSGT00950000182974.a.a.a.a.q.a #23	ENSGT00940000156803.k #24	ENSGT00390000017614.f.a.a.a.a	ENSGT00940000163031.b.b.a #26	ENSGT00510000052596.a.f	ENSGT00390000002866.b.m.a	ENSGT00950000182987.c.b.b	ENSGT00940000153203.B.g	ENSGT00940000157061.a.a.a	ENSGT00950000182864.a.b.b.a.b.a.a.a.b.f.a
Golden-line barbel	MODERN SPECIES	613																fmr1 (ENSSGRG00000022156) #22	ENSSGRG00000022117 #23	ids (ENSSGRG00000022114) #24	ENSSGRG00000022113	zgc:162941 (ENSSGRG00000022111)	zgc:66433 (ENSSGRG00000022110) #26	ENSSGRG00000022109	rnf20 (ENSSGRG00000022092)	aldob (ENSSGRG00000021724)	maea (ENSSGRG00000021545)	zgc:136929 (ENSSGRG00000021537)	ENSSGRG00000020237	si:ch211-175m2.5 (ENSSGRG00000020211)	smim19 (ENSSGRG00000020210) #30	smim19 (ENSSGRG00000020208) #30	egr1 (ENSSGRG00000020206)
Common carp reference	MODERN SPECIES	20	ENSCCRG00000036277	ENSCCRG00000057291	spon2b (ENSCCRG00000080048)	ENSCCRG00000047182	fgfrl1a (ENSCCRG00000057893)	rnf4 (ENSCCRG00000010189)	selenot2 (ENSCCRG00000007073)	rab33a (ENSCCRG00000049260) #21	ENSCCRG00000007056 #20	ENSCCRG00000061421	ENSCCRG00000060022	SLITRK4 (ENSCCRG00000065823)	ENSCCRG00000071988	ENSCCRG00000057627	ENSCCRG00000004677	fmr1 (ENSCCRG00000049036) #22	AFF2 (ENSCCRG00000080866) #23	ids (ENSCCRG00000005510) #24	zgc:162941 (ENSCCRG00000005468)	zgc:66433 (ENSCCRG00000012333) #26	ENSCCRG00000062238	rnf20 (ENSCCRG00000012322)	aldob (ENSCCRG00000075499)	maea (ENSCCRG00000012162)	zgc:136929 (ENSCCRG00000055582)	ENSCCRG00000072538	si:ch211-175m2.5 (ENSCCRG00000054362)	smim19 (ENSCCRG00000060581) #30	egr1 (ENSCCRG00000075441)	ENSCCRG00000066370	reep2 (ENSCCRG00000077863)
Clupeiformes	ANCESTRAL SPECIES																	ENSGT00950000183189.a.b.b #22
Denticle herring	MODERN SPECIES	9	klhl4 (ENSDCDG00000028316)	eef1g (ENSDCDG00000028321)	polr2g (ENSDCDG00000028359)	ENSDCDG00000028366 #31	gpr137 (ENSDCDG00000028368) #32	ENSDCDG00000028372	neurog1 (ENSDCDG00000028374)	ARAP3 (ENSDCDG00000028406)	ENSDCDG00000029718	tgfbi (ENSDCDG00000029723)	smad5 (ENSDCDG00000029750) #34	syvn1 (ENSDCDG00000029766) #33	st3gal5 (ENSDCDG00000029772)	ENSDCDG00000029773	eif4ebp3l (ENSDCDG00000029774)	fmr1 (ENSDCDG00000029851) #22	rell2 (ENSDCDG00000032282)	hdac3 (ENSDCDG00000032286) #19	ENSDCDG00000032457 #16	ENSDCDG00000032488 #14	il1rapl2 (ENSDCDG00000032783) #12	fam199x (ENSDCDG00000032794) #29	asah1a (ENSDCDG00000032809)	med29 (ENSDCDG00000032822)	ENSDCDG00000032824	ENSDCDG00000032826	nkrf (ENSDCDG00000032829)	ENSDCDG00000032830	ube2a (ENSDCDG00000032831)	SLC25A5 (ENSDCDG00000032834)	slc25a43 (ENSDCDG00000032836)
Osteoglossiformes	ANCESTRAL SPECIES	150								ENSGT00550000075136	ENSGT00940000155470.a	ENSGT00390000006788.a.a	ENSGT00390000011725.c	ENSGT00940000160863 #21	ENSGT00940000159942.b #20	ENSGT00940000160971.g	ENSGT00940000161248.o	ENSGT00950000183189.a.b.b #22	ENSGT00950000182974.a.a.a.a #23	ENSGT00940000156803 #24	ENSGT00390000017614	ENSGT00940000163031.b.b #26	ENSGT00440000033329.b.a.b #27	ENSGT00390000013770 #28	ENSGT00940000160633.d	ENSGT01090000260076.b.a.w #12	ENSGT00950000183196.D.b #14	ENSGT00940000159795 #16	ENSGT00940000165542 #19	ENSGT00940000153441.b	ENSGT00940000160487 #17	ENSGT00940000160541	ENSGT00510000046732.B.i
P. kingsleyae	MODERN SPECIES	176										selenot2 (ENSPKIG00000001790)	rab33a (ENSPKIG00000001765) #21	ENSPKIG00000001719 #20	ENSPKIG00000001689	SLITRK4 (ENSPKIG00000001679)	SLITRK2 (ENSPKIG00000001667)	fmr1 (ENSPKIG00000001628) #22	ENSPKIG00000001601	AFF2 (ENSPKIG00000001556) #23	ids (ENSPKIG00000001494) #24	zgc:66433 (ENSPKIG00000001440) #26	LONRF3 (ENSPKIG00000001403) #27	commd5 (ENSPKIG00000001371) #28	ENSPKIG00000001344	ENSPKIG00000001320	ENSPKIG00000001294	taf7 (ENSPKIG00000001246)	ENSPKIG00000001206	drp2 (ENSPKIG00000001133)	ENSPKIG00000001098	CENPI (ENSPKIG00000001063)	tmem35 (ENSPKIG00000001049)
Asian bonytongue	MODERN SPECIES	4	RAB41 (ENSSFOG00015004941)	ARR3 (ENSSFOG00015004685)	inppl1b (ENSSFOG00015004558)	P2RY4 (ENSSFOG00015004543)	MARS2 (ENSSFOG00015004532)	ENSSFOG00015004448	ENOX2 (ENSSFOG00015004364)	ENSSFOG00015027378	ENOX2 (ENSSFOG00015025686)	selenot2 (ENSSFOG00015004290)	rab33a (ENSSFOG00015031821) #21	ENSSFOG00015004088 #20	SLITRK4 (ENSSFOG00015029884)	SLITRK4 (ENSSFOG00015004067)	SLITRK2 (ENSSFOG00015004061)	fmr1 (ENSSFOG00015004051) #22	AFF2 (ENSSFOG00015004020) #23	ids (ENSSFOG00015003962) #24	lygl2 (ENSSFOG00015003838)	zgc:66433 (ENSSFOG00015003809) #26	LONRF3 (ENSSFOG00015003783) #27	commd5 (ENSSFOG00015003765) #28	ENSSFOG00015003722	il1rapl2 (ENSSFOG00015003661) #12	ENSSFOG00015003576 #14	ENSSFOG00015003533 #16	hdac3 (ENSSFOG00015003477) #19	ENSSFOG00015003471	FCHSD1 (ENSSFOG00015003395)	emx3 (ENSSFOG00015003367)	b4galt7 (ENSSFOG00015003328)
Spotted gar	MODERN SPECIES	673	DIAPH2 (ENSLOCG00000015338)	pcdh19 (ENSLOCG00000015346)	tnmd (ENSLOCG00000015348)	elf1 (ENSLOCG00000015349)	aifm1 (ENSLOCG00000015353)	MARS2 (ENSLOCG00000015357)	rab33a (ENSLOCG00000015358) #21	selenot2 (ENSLOCG00000015360)	ENOX2 (ENSLOCG00000015363)	ENSLOCG00000015366	ENSLOCG00000015381	med12 (ENSLOCG00000015382)	ENSLOCG00000015394 #20	SLITRK4 (ENSLOCG00000017498)	SLITRK2 (ENSLOCG00000017499)	fmr1 (ENSLOCG00000015397) #22	AFF2 (ENSLOCG00000015403) #23	ids (ENSLOCG00000015405) #24	ENSLOCG00000017500	WDR44 (ENSLOCG00000015409)	klhl13 (ENSLOCG00000015414)
Reedfish	MODERN SPECIES	3	zgc:162171 (ENSECRG00000011941)	ENSECRG00000011930	ENSECRG00000011917	ENSECRG00000011898	med12 (ENSECRG00000011825)	ENSECRG00000011696 #20	ENSECRG00000011645	ENSECRG00000011635	SLITRK4 (ENSECRG00000011626)	ENSECRG00000011617	ENSECRG00000011605	ENSECRG00000011596	SLITRK2 (ENSECRG00000011585)	slc6a14 (ENSECRG00000011571)	ENSECRG00000011549	fmr1 (ENSECRG00000011516) #22	ENSECRG00000011497	AFF2 (ENSECRG00000011455) #23	ids (ENSECRG00000011409) #24	lygl2 (ENSECRG00000011386)	zgc:66433 (ENSECRG00000011338) #26	ENSECRG00000011023 #27	commd5 (ENSECRG00000011009) #28	fam199x (ENSECRG00000010996) #29	ENSECRG00000010985	il1rapl2 (ENSECRG00000010980) #12	IL1RAPL2 (ENSECRG00000010974) #12	ENSECRG00000010959 #14	ENSECRG00000010947 #14	ENSECRG00000010941	RADX (ENSECRG00000010930)
Sarcopterygii	ANCESTRAL SPECIES	4	ENSGT01100000263502.A.a.a.a.a	ENSGT01070000253816.a.b	ENSGT00940000158723	ENSGT00940000165126	ENSGT00940000163390	ENSGT00940000162539	ENSGT00940000163347	ENSGT00940000160788	ENSGT00940000162313	ENSGT00940000159516	ENSGT00940000156974	ENSGT00940000158878	ENSGT00940000162359	ENSGT00940000160971	ENSGT00940000161248	ENSGT00950000183189.a.b.b #22	ENSGT00950000182974.a.a.a.a #23	ENSGT00940000156803 #24	ENSGT00730000111366	ENSGT00940000157029	ENSGT00940000153669.b	ENSGT00940000154344.a	ENSGT00940000153299	ENSGT00940000160515	ENSGT00390000017980	ENSGT00940000164304	ENSGT01050000245018	ENSGT00940000159451	ENSGT00940000167197	ENSGT00940000158347	ENSGT00390000005094
Tetrapoda	ANCESTRAL SPECIES	20	ENSGT01100000263502.A.a.a.a.a	ENSGT01070000253816.a.b	ENSGT00940000158723	ENSGT00940000153425	ENSGT00940000163390	ENSGT00940000162539	ENSGT00940000160788	ENSGT00940000163347	ENSGT00940000162313	ENSGT00940000159516	ENSGT00940000156974	ENSGT00940000158878	ENSGT00940000162359	ENSGT00940000160971	ENSGT00940000161248	ENSGT00950000183189.a.b.b #22	ENSGT00950000182974.a.a.a.a #23	ENSGT00940000156803 #24	ENSGT00940000158388	ENSGT00940000157452	ENSGT00390000012182	ENSGT00730000111366	ENSGT00940000157029	ENSGT00940000153669.b	ENSGT00940000154344.a	ENSGT00940000153299	ENSGT00940000160515	ENSGT00390000017980	ENSGT00940000164304	ENSGT01050000245018	ENSGT00940000159451
Amniota	ANCESTRAL SPECIES	24	ENSGT01100000263502.A.a.a.a.a	ENSGT01070000253816.a.b	ENSGT00940000158723	ENSGT00940000153425	ENSGT00940000163390	ENSGT00940000162539	ENSGT00940000160788	ENSGT00940000163347	ENSGT00940000162313	ENSGT00940000159516	ENSGT00940000156974	ENSGT00940000158878	ENSGT00940000162359	ENSGT00940000160971	ENSGT00940000161248	ENSGT00950000183189.a.b.b #22	ENSGT00950000182974.a.a.a.a #23	ENSGT00940000156803 #24	ENSGT00940000158388	ENSGT00940000157452	ENSGT00390000012182	ENSGT00730000111366	ENSGT00940000157029	ENSGT00940000153669.b	ENSGT00940000154344.a	ENSGT00940000153299.d	ENSGT00940000160515	ENSGT00390000017980	ENSGT00940000164304	ENSGT01050000245018	ENSGT00940000159451
Sauria	ANCESTRAL SPECIES	21	ENSGT00390000009902	ENSGT00530000063353.b	ENSGT01100000263502.A.a.a.a.a	ENSGT01070000253816.a.b	ENSGT00940000158723	ENSGT00940000153425	ENSGT00940000163390	ENSGT00940000160788	ENSGT00940000162313	ENSGT00940000159516	ENSGT00940000156974	ENSGT00940000158878	ENSGT00940000162359	ENSGT00940000160971	ENSGT00940000161248	ENSGT00950000183189.a.b.b #22	ENSGT00950000182974.a.a.a.a #23	ENSGT00940000156803 #24	ENSGT00940000158388	ENSGT00940000157452	ENSGT00390000012182	ENSGT00730000111366	ENSGT00940000157029	ENSGT00940000153669.b	ENSGT00940000154344.a	ENSGT00940000153299.d	ENSGT00940000160515	ENSGT00390000017980	ENSGT00940000164304	ENSGT01050000245018	ENSGT00940000159451
Lepidosauria	ANCESTRAL SPECIES	30	ENSGT00390000009902	ENSGT00530000063353.b	ENSGT01100000263502.A.a.a.a.a	ENSGT01070000253816.a.b	ENSGT00940000158723	ENSGT00940000153425	ENSGT00940000163390	ENSGT00940000160788	ENSGT00940000162313	ENSGT00940000159516	ENSGT00940000156974	ENSGT00940000158878	ENSGT00940000162359	ENSGT00940000160971	ENSGT00940000161248	ENSGT00950000183189.a.b.b #22	ENSGT00950000182974.a.a.a.a #23	ENSGT00940000156803 #24	ENSGT00940000158388	ENSGT00940000157452	ENSGT00390000012182	ENSGT00730000111366	ENSGT00940000157029	ENSGT00940000153669.b	ENSGT00940000154344.a	ENSGT00940000153299.d	ENSGT00940000160515	ENSGT00390000017980	ENSGT00940000164304	ENSGT00940000159451	ENSGT01050000245018
Episquamata	ANCESTRAL SPECIES	14	ENSGT00530000063353.b	ENSGT01100000263502.A.a.a.a.a	ENSGT01070000253816.a.b	ENSGT00940000158723	ENSGT00940000153425	ENSGT00940000163390	ENSGT00940000160788	ENSGT00940000162313	ENSGT00940000159516.p	ENSGT00940000159516.o	ENSGT00940000156974	ENSGT00940000158878	ENSGT00940000162359	ENSGT00940000160971	ENSGT00940000161248	ENSGT00950000183189.a.b.b #22	ENSGT00950000182974.a.a.a.a #23	ENSGT00940000156803 #24	ENSGT00940000158388	ENSGT00940000157452	ENSGT00390000012182	ENSGT00730000111366	ENSGT00940000157029	ENSGT00940000153669.b	ENSGT00940000154344.a	ENSGT00940000153299.d	ENSGT00940000160515	ENSGT00390000017980	ENSGT00940000164304	ENSGT00940000159451	ENSGT01050000245018
Laterata	ANCESTRAL SPECIES	32	ENSGT00530000063353.b	ENSGT01100000263502.A.a.a.a.a	ENSGT01070000253816.a.b	ENSGT00940000158723	ENSGT00940000153425	ENSGT00940000163390	ENSGT00940000160788	ENSGT00940000163347	ENSGT00940000159516.p	ENSGT00940000159516.o	ENSGT00940000156974	ENSGT00940000158878	ENSGT00940000162359	ENSGT00940000160971	ENSGT00940000161248	ENSGT00950000183189.a.b.b #22	ENSGT00950000182974.a.a.a.a #23	ENSGT00940000156803 #24	ENSGT00940000158388	ENSGT00940000157452	ENSGT00390000012182	ENSGT00730000111366	ENSGT00940000157029	ENSGT00940000153669.b	ENSGT00940000154344.a	ENSGT00940000153299.d	ENSGT00940000160515	ENSGT00390000017980	ENSGT00940000164304	ENSGT00940000159451	ENSGT00940000158347
Common wall lizard	MODERN SPECIES	419	ENSPMRG00000022514	ENSPMRG00000022508	MCF2 (ENSPMRG00000022135)	ENSPMRG00000022025	ATP11C (ENSPMRG00000021983)	SOX3 (ENSPMRG00000021966)	ENSPMRG00000021950	ENSPMRG00000021939	ENSPMRG00000021929	SLITRK4 (ENSPMRG00000021922)	ENSPMRG00000021914	SLITRK2 (ENSPMRG00000021906)	ENSPMRG00000021894	ENSPMRG00000021889	ENSPMRG00000021884	FMR1 (ENSPMRG00000021869) #22	AFF2 (ENSPMRG00000021844) #23	IDS (ENSPMRG00000021834) #24	TMEM185A (ENSPMRG00000021825)	ENSPMRG00000021821	ENSPMRG00000021813	ENSPMRG00000021810	MAMLD1 (ENSPMRG00000021789)	MTM1 (ENSPMRG00000021760)	MTMR1 (ENSPMRG00000021744)	ENSPMRG00000021736	CD99L2 (ENSPMRG00000019965)	HMGB3 (ENSPMRG00000019958)	ENSPMRG00000019953	GPR50 (ENSPMRG00000019946)	ENSPMRG00000019932
Argentine black and white tegu	MODERN SPECIES	98				BRS3 (ENSSMRG00000017738)	PABIR2 (ENSSMRG00000017739)	HPRT1 (ENSSMRG00000017748)	PHF6 (ENSSMRG00000017750)	ENSSMRG00000017753	ENSSMRG00000017756	MCF2 (ENSSMRG00000017766)	ATP11C (ENSSMRG00000018169)	SLITRK4 (ENSSMRG00000018170)	SLITRK2 (ENSSMRG00000018175)	ENSSMRG00000018176	SEC22B (ENSSMRG00000018177)	FMR1 (ENSSMRG00000018178) #22	AFF2 (ENSSMRG00000018180) #23	IDS (ENSSMRG00000018182) #24	TMEM185A (ENSSMRG00000018183)	ENSSMRG00000018184	MAMLD1 (ENSSMRG00000018185)	MTM1 (ENSSMRG00000018186)	MTMR1 (ENSSMRG00000018187)	CD99L2 (ENSSMRG00000018662)	HMGB3 (ENSSMRG00000018665)	GPR50 (ENSSMRG00000018666)	VMA21 (ENSSMRG00000018667)
Toxicofera	ANCESTRAL SPECIES	17	ENSGT00530000063353.b	ENSGT01070000253816.a.b	ENSGT00940000158723	ENSGT00940000153425	ENSGT00940000163390	ENSGT00940000160788	ENSGT00940000162313.g	ENSGT00940000159516.p	ENSGT00960000187127.c	ENSGT00940000159516.o	ENSGT00940000156974	ENSGT00940000158878	ENSGT00940000162359	ENSGT00940000160971	ENSGT00940000161248	ENSGT00950000183189.a.b.b #22	ENSGT00950000182974.a.a.a.a #23	ENSGT00940000156803 #24	ENSGT00940000158388	ENSGT00940000157452	ENSGT00390000012182	ENSGT00730000111366	ENSGT00940000157029	ENSGT00940000153669.b	ENSGT00940000154344.a	ENSGT00940000153299.d	ENSGT00940000153299.c.a	ENSGT00940000160515	ENSGT00390000017980	ENSGT00940000164304	ENSGT00940000159451
Elapidae	ANCESTRAL SPECIES	14	ENSGT00390000009902	ENSGT00530000063353.b	ENSGT01070000253816.a.b	ENSGT00940000158723	ENSGT00940000153425	ENSGT00940000163390	ENSGT00940000160788	ENSGT00940000162313.g	ENSGT00940000159516.p.a	ENSGT00940000159516.o	ENSGT00940000156974	ENSGT00940000158878	ENSGT00940000162359	ENSGT00940000160971	ENSGT00940000161248	ENSGT00950000183189.a.b.b #22	ENSGT00950000182974.a.a.a.a.j #23	ENSGT00950000182974.a.a.a.a.i #23	ENSGT00940000156803 #24	ENSGT00940000158388	ENSGT00940000157452	ENSGT00390000012182	ENSGT00730000111366	ENSGT00940000157029	ENSGT00940000153669.b	ENSGT00940000154344.a	ENSGT00940000153299.d	ENSGT00390000017980	ENSGT00940000164304	ENSGT00940000159451	ENSGT01050000245018
Elapidae_a	ANCESTRAL SPECIES	46	ENSGT00390000009902	ENSGT00530000063353.b	ENSGT00990000212640	ENSGT00940000158723	ENSGT00940000153425	ENSGT00940000163390	ENSGT00940000160788	ENSGT00940000162313.g	ENSGT00940000159516.p.a	ENSGT00940000159516.o	ENSGT00940000156974	ENSGT00940000158878	ENSGT00940000162359	ENSGT00940000160971	ENSGT00940000161248	ENSGT00950000183189.a.b.b #22	ENSGT00950000182974.a.a.a.a.j #23	ENSGT00950000182974.a.a.a.a.i #23	ENSGT00940000156803 #24	ENSGT00940000158388	ENSGT00940000157452	ENSGT00390000012182
Acanthophiinae	ANCESTRAL SPECIES	45	ENSGT00390000009902	ENSGT00530000063353.b	ENSGT00990000212640	ENSGT00940000158723	ENSGT00940000153425	ENSGT00940000163390	ENSGT00940000160788	ENSGT00940000162313.g	ENSGT00940000159516.p.a	ENSGT00940000159516.o	ENSGT00940000156974	ENSGT00940000158878	ENSGT00940000162359	ENSGT00940000160971	ENSGT00940000161248	ENSGT00950000183189.a.b.b #22	ENSGT00950000182974.a.a.a.a.j #23	ENSGT00950000182974.a.a.a.a.i #23	ENSGT00940000156803 #24	ENSGT00940000158388	ENSGT00940000157452	ENSGT00390000012182
Mainland tiger snake	MODERN SPECIES	195															SLITRK4 (ENSNSUG00000006482)	FMR1 (ENSNSUG00000006500) #22	AFF2 (ENSNSUG00000010143) #23	IDS (ENSNSUG00000010146) #24	ENSNSUG00000010218	ENSNSUG00000010219	ENSNSUG00000010228
Eastern brown snake	MODERN SPECIES	86	HTATSF1 (ENSPTXG00000013410)	VGLL1 (ENSPTXG00000013411)	ENSPTXG00000013412	ARHGEF6 (ENSPTXG00000013413)	ENSPTXG00000013414	ENSPTXG00000013416	ZIC3 (ENSPTXG00000013418)	FGF13 (ENSPTXG00000013419)	ENSPTXG00000013420	ENSPTXG00000010995	MCF2 (ENSPTXG00000010997)	ATP11C (ENSPTXG00000011018)	SOX3 (ENSPTXG00000011083)	SLITRK4 (ENSPTXG00000011084)	SLITRK2 (ENSPTXG00000011085)	FMR1 (ENSPTXG00000011086) #22	ENSPTXG00000011087 #23	ENSPTXG00000011088 #23	IDS (ENSPTXG00000011089) #24	TMEM185A (ENSPTXG00000011136)	ENSPTXG00000011139	ENSPTXG00000011142
Blue-lipped sea krait	MODERN SPECIES	299																FMR1 (ENSLLTG00000004534) #22
Indian cobra	MODERN SPECIES	13	BRS3 (ENSNNAG00000018005)	HTATSF1 (ENSNNAG00000017993)	VGLL1 (ENSNNAG00000017986)	CD40LG (ENSNNAG00000017980)	ARHGEF6 (ENSNNAG00000017970)	ENSNNAG00000017958	ENSNNAG00000017951	ZIC3 (ENSNNAG00000017947)	FGF13 (ENSNNAG00000017944)	ENSNNAG00000017942	ENSNNAG00000017941	ENSNNAG00000017938	ENSNNAG00000017937	ATP11C (ENSNNAG00000017854)	SLITRK2 (ENSNNAG00000017823)	FMR1 (ENSNNAG00000017819) #22	ENSNNAG00000017813 #23	IDS (ENSNNAG00000017800) #24	TMEM185A (ENSNNAG00000017798)	ENSNNAG00000017778	ENSNNAG00000017773	MAMLD1 (ENSNNAG00000017769)	MTM1 (ENSNNAG00000017766)	MTMR1 (ENSNNAG00000017761)	CD99L2 (ENSNNAG00000017757)	HMGB3 (ENSNNAG00000017752)	VMA21 (ENSNNAG00000017750)	ENY2 (ENSNNAG00000017749)	ENSNNAG00000017746	TBC1D8B (ENSNNAG00000017704)	RNF128 (ENSNNAG00000017698)
Lizard	MODERN SPECIES	51																ENSACAG00000007899 #22
tuatara	MODERN SPECIES	1491	SLC9A6 (ENSSPUG00000014846)	FHL1 (ENSSPUG00000014828)	MAP7D3 (ENSSPUG00000014797)	BRS3 (ENSSPUG00000014779)	HTATSF1 (ENSSPUG00000014767)	CD40LG (ENSSPUG00000014758)	ARHGEF6 (ENSSPUG00000014711)	ENSSPUG00000014648	ENSSPUG00000014620	FGF13 (ENSSPUG00000014595)	F9 (ENSSPUG00000014572)	MCF2 (ENSSPUG00000014316)	ATP11C (ENSSPUG00000014232)	SOX3 (ENSSPUG00000014219)	ENSSPUG00000014199	FMR1 (ENSSPUG00000014177) #22	IDS (ENSSPUG00000014056) #24	ENSSPUG00000014048	ENSSPUG00000014041	ENSSPUG00000014033	ENSSPUG00000014026	MAMLD1 (ENSSPUG00000014011)	MTM1 (ENSSPUG00000013987)	MTMR1 (ENSSPUG00000013970)	CD99L2 (ENSSPUG00000013859)	HMGB3 (ENSSPUG00000013819)	GPR50 (ENSSPUG00000013815)	VMA21 (ENSSPUG00000013810)	TBC1D8B (ENSSPUG00000013784)	RNF128 (ENSSPUG00000013648)	RADX (ENSSPUG00000013433)
Archelosauria	ANCESTRAL SPECIES	24	ENSGT00390000009902	ENSGT00530000063353.b	ENSGT01100000263502.A.a.a.a.a	ENSGT01070000253816.a.b	ENSGT00940000158723	ENSGT00940000153425	ENSGT00940000163390	ENSGT00940000160788	ENSGT00940000162313	ENSGT00940000159516	ENSGT00940000156974	ENSGT00940000158878	ENSGT00940000162359	ENSGT00940000160971	ENSGT00940000161248	ENSGT00950000183189.a.b.b #22	ENSGT00950000182974.a.a.a.a #23	ENSGT00940000156803 #24	ENSGT00940000158388	ENSGT00940000157452	ENSGT00390000012182	ENSGT00730000111366	ENSGT00940000157029	ENSGT00940000153669.b	ENSGT00940000154344.a	ENSGT00940000153299.d	ENSGT00940000160515	ENSGT00390000017980	ENSGT00940000164304	ENSGT01050000245018	ENSGT00940000159451
Cryptodira	ANCESTRAL SPECIES	29	ENSGT00390000009902	ENSGT00530000063353.b	ENSGT01100000263502.A.a.a.a.a	ENSGT01070000253816.a.b	ENSGT00940000158723	ENSGT00940000153425	ENSGT00940000163390	ENSGT00940000160788	ENSGT00940000162313	ENSGT00940000159516	ENSGT00940000156974	ENSGT00940000158878	ENSGT00940000162359	ENSGT00940000160971	ENSGT00940000161248	ENSGT00950000183189.a.b.b #22	ENSGT00950000182974.a.a.a.a #23	ENSGT00940000156803 #24	ENSGT00940000158388	ENSGT00940000157452	ENSGT00390000012182	ENSGT00730000111366	ENSGT00940000157029	ENSGT00940000153669.b	ENSGT00940000154344.a	ENSGT00940000153299.d	ENSGT00940000160515	ENSGT00390000017980	ENSGT00940000164304	ENSGT01050000245018	ENSGT00940000159451
Testudinoidea	ANCESTRAL SPECIES	24	ENSGT00530000063353.b	ENSGT01100000263502.A.a.a.a.a	ENSGT01070000253816.a.b	ENSGT00940000158723	ENSGT00940000153425	ENSGT00940000163390.a	ENSGT00940000165216	ENSGT00940000160788	ENSGT00940000162313	ENSGT00940000159516	ENSGT00940000156974	ENSGT00940000158878	ENSGT00940000162359	ENSGT00940000160971	ENSGT00940000161248	ENSGT00950000183189.a.b.b #22	ENSGT00950000182974.a.a.a.a #23	ENSGT00940000156803 #24	ENSGT00940000158388	ENSGT00940000157452.r	ENSGT00940000157452.q	ENSGT00390000012182	ENSGT00730000111366	ENSGT00940000157029	ENSGT00940000153669.b	ENSGT00940000154344.a	ENSGT00940000153299.d	ENSGT00940000160515	ENSGT00390000017980	ENSGT00940000164304	ENSGT00940000159451
Emydidae	ANCESTRAL SPECIES	32	ENSGT01100000263502.A.a.a.a.a	ENSGT01070000253816.a.b	ENSGT00940000158723	ENSGT00940000153425	ENSGT00940000163390.a	ENSGT00940000165216	ENSGT00940000160788	ENSGT00940000163347	ENSGT00940000162313	ENSGT00940000159516.r	ENSGT00940000156974	ENSGT00940000158878	ENSGT00940000162359	ENSGT00940000160971	ENSGT00940000161248	ENSGT00950000183189.a.b.b #22	ENSGT00950000182974.a.a.a.a #23	ENSGT00940000156803 #24	ENSGT00940000158388	ENSGT00940000157452.r	ENSGT00940000157452.q	ENSGT00390000012182	ENSGT00730000111366	ENSGT00940000157029	ENSGT00940000153669.b	ENSGT00940000154344.a	ENSGT00940000153299.d	ENSGT00940000160515	ENSGT00390000017980	ENSGT00940000164304	ENSGT00940000159451
Three-toed box turtle	MODERN SPECIES	61	ENSTMTG00000023196	CD40LG (ENSTMTG00000023197)	ARHGEF6 (ENSTMTG00000023198)	ENSTMTG00000023199	ENSTMTG00000023201	ENSTMTG00000023202	ENSTMTG00000023203	ZIC3 (ENSTMTG00000023204)	FGF13 (ENSTMTG00000023205)	ENSTMTG00000023206	MCF2 (ENSTMTG00000023207)	ATP11C (ENSTMTG00000023208)	SOX3 (ENSTMTG00000023209)	SLITRK4 (ENSTMTG00000023210)	SLITRK2 (ENSTMTG00000023211)	FMR1 (ENSTMTG00000023213) #22	ENSTMTG00000023214 #23	ENSTMTG00000023215 #23	IDS (ENSTMTG00000023216) #24	TMEM185A (ENSTMTG00000023217)	ENSTMTG00000023218	ENSTMTG00000023219	MAMLD1 (ENSTMTG00000023220)	MTM1 (ENSTMTG00000023221)	MTMR1 (ENSTMTG00000023222)	CD99L2 (ENSTMTG00000023223)	HMGB3 (ENSTMTG00000023224)	GPR50 (ENSTMTG00000023225)	VMA21 (ENSTMTG00000023226)	TBC1D8B (ENSTMTG00000023227)	ENSTMTG00000023228
painted turtle	MODERN SPECIES	715	GPR161 (ENSCPBG00000020904)	ENSCPBG00000020902	CPOX (ENSCPBG00000020901)	ENSCPBG00000020900	CLHC1 (ENSCPBG00000020899)	ENSCPBG00000020897	MTIF2 (ENSCPBG00000020894)	ENSCPBG00000020887	ENSCPBG00000020884	CFAP36 (ENSCPBG00000020882)	ENSCPBG00000020875	PNPT1 (ENSCPBG00000020856)	SLITRK4 (ENSCPBG00000020851)	SLITRK2 (ENSCPBG00000020846)	ENSCPBG00000020842	FMR1 (ENSCPBG00000020840) #22	AFF2 (ENSCPBG00000020831) #23	IDS (ENSCPBG00000020828) #24	TMEM185A (ENSCPBG00000020826)	ENSCPBG00000020825	ENSCPBG00000020824	ENSCPBG00000020822	MAMLD1 (ENSCPBG00000020820)	MTM1 (ENSCPBG00000020815)	MTMR1 (ENSCPBG00000020808)	CD99L2 (ENSCPBG00000020801)	HMGB3 (ENSCPBG00000020797)	GPR50 (ENSCPBG00000020796)	VMA21 (ENSCPBG00000020793)	ENSCPBG00000020784	ENSCPBG00000020782
Testudinidae	ANCESTRAL SPECIES	21	ENSGT00390000009902	ENSGT00530000063353.b	ENSGT01070000253816.a.b	ENSGT00940000158723	ENSGT00940000153425	ENSGT00940000163390.a	ENSGT00940000165216	ENSGT00940000160788	ENSGT00940000162313	ENSGT00940000159516	ENSGT00940000156974	ENSGT00940000158878	ENSGT00940000162359	ENSGT00940000160971	ENSGT00940000161248	ENSGT00950000183189.a.b.b #22	ENSGT00950000182974.a.a.a.a #23	ENSGT00940000156803 #24	ENSGT00940000158388	ENSGT00940000157452.r	ENSGT00940000157452.q	ENSGT00390000012182	ENSGT00730000111366	ENSGT00940000157029	ENSGT00940000153669.b	ENSGT00940000154344.a	ENSGT00940000153299.d	ENSGT00940000160515	ENSGT00390000017980	ENSGT00940000159451	ENSGT01050000245018
Goode s thornscrub tortoise	MODERN SPECIES	23	VGLL1 (ENSGEVG00005017059)	CD40LG (ENSGEVG00005017037)	ARHGEF6 (ENSGEVG00005016956)	ENSGEVG00005016908	ENSGEVG00005016877	ENSGEVG00005016815	ENSGEVG00005016761	ZIC3 (ENSGEVG00005016724)	FGF13 (ENSGEVG00005016687)	F9 (ENSGEVG00005016537)	MCF2 (ENSGEVG00005016390)	ATP11C (ENSGEVG00005013525)	SOX3 (ENSGEVG00005012862)	SLITRK4 (ENSGEVG00005012843)	SLITRK2 (ENSGEVG00005012826)	FMR1 (ENSGEVG00005012753) #22	ENSGEVG00005012672 #23	ENSGEVG00005012369 #23	IDS (ENSGEVG00005012312) #24	ENSGEVG00005012285	TMEM185A (ENSGEVG00005012246)	ENSGEVG00005012198	ENSGEVG00005012176	MAMLD1 (ENSGEVG00005012154)	MTM1 (ENSGEVG00005012134)	MTMR1 (ENSGEVG00005012057)	CD99L2 (ENSGEVG00005011928)	HMGB3 (ENSGEVG00005011874)	GPR50 (ENSGEVG00005011833)	VMA21 (ENSGEVG00005011758)	ENSGEVG00005011736
Chinese turtle	MODERN SPECIES	2217															SLITRK2 (ENSPSIG00000000218)	FMR1 (ENSPSIG00000009079) #22	AFF2 (ENSPSIG00000010309) #23	IDS (ENSPSIG00000012376) #24	TMEM185A (ENSPSIG00000012413)	ENSPSIG00000013231	MAMLD1 (ENSPSIG00000013291)	MTM1 (ENSPSIG00000013301)	MTMR1 (ENSPSIG00000014492)	CD99L2 (ENSPSIG00000015880)	HMGB3 (ENSPSIG00000015958)	ENSPSIG00000000237	VMA21 (ENSPSIG00000016220)	ENSPSIG00000016231	TBC1D8B (ENSPSIG00000016956)
Archosauria	ANCESTRAL SPECIES	15	ENSGT00390000015219	ENSGT00940000161737	ENSGT00530000063786.b	ENSGT00940000161221	ENSGT00940000160785	ENSGT00940000161952	ENSGT00940000160946	ENSGT00730000112379	ENSGT00940000155374 #8	ENSGT00940000161201	ENSGT00940000159444	ENSGT00940000164188	ENSGT00940000162359	ENSGT00940000160971	ENSGT00940000161248	ENSGT00950000183189.a.b.b #22	ENSGT00950000182974.a.a.a.a #23	ENSGT00940000156803 #24	ENSGT00940000158388	ENSGT00940000157452	ENSGT00390000012182	ENSGT00730000111366	ENSGT00940000157029	ENSGT00940000153669.b	ENSGT00940000154344.a	ENSGT00940000153299.d	ENSGT00940000160515	ENSGT00390000017980	ENSGT00940000164304	ENSGT01050000245018	ENSGT00940000159451
Aves	ANCESTRAL SPECIES	23	ENSGT00390000015219	ENSGT00940000161737	ENSGT00530000063786.b	ENSGT00940000161221	ENSGT00940000160785	ENSGT00940000161952	ENSGT00940000160946	ENSGT00730000112379	ENSGT00940000155374 #8	ENSGT00940000161201	ENSGT00940000159444	ENSGT00940000164188	ENSGT00940000162359	ENSGT00940000160971	ENSGT00940000161248	ENSGT00950000183189.a.b.b #22	ENSGT00950000182974.a.a.a.a #23	ENSGT00940000156803 #24	ENSGT00940000158388	ENSGT00940000157452	ENSGT00390000012182	ENSGT00730000111366	ENSGT00940000157029	ENSGT00940000153669.b	ENSGT00940000154344.a	ENSGT00940000153299.d	ENSGT00940000160515	ENSGT00390000017980	ENSGT00940000164304	ENSGT01050000245018	ENSGT00940000159451
African ostrich	MODERN SPECIES	71																FMR1 (ENSSCUG00000000120) #22
Neognathae	ANCESTRAL SPECIES	22	ENSGT00390000015219	ENSGT00940000161737	ENSGT00530000063786.b	ENSGT00940000161221	ENSGT00940000160785	ENSGT00940000161952	ENSGT00940000160946	ENSGT00730000112379	ENSGT00940000155374 #8	ENSGT00940000161201	ENSGT00940000159444	ENSGT00940000164188	ENSGT00940000162359	ENSGT00940000160971	ENSGT00940000161248	ENSGT00950000183189.a.b.b #22	ENSGT00950000182974.a.a.a.a #23	ENSGT00940000156803 #24	ENSGT00940000158388	ENSGT00940000157452.s.b	ENSGT00390000012182	ENSGT00730000111366	ENSGT00940000157029	ENSGT00940000153669.b	ENSGT00940000154344.a	ENSGT00940000153299.d	ENSGT00940000160515	ENSGT00390000017980	ENSGT00940000164304	ENSGT01050000245018	ENSGT00940000159451
Neognathae_b	ANCESTRAL SPECIES		ENSGT00390000015219	ENSGT00940000161737	ENSGT00530000063786.b	ENSGT00940000161221	ENSGT00940000160785	ENSGT00940000161952	ENSGT00940000160946	ENSGT00730000112379	ENSGT00940000155374 #8	ENSGT00940000161201	ENSGT00940000159444	ENSGT00940000164188	ENSGT00940000162359	ENSGT00940000160971	ENSGT00940000161248	ENSGT00950000183189.a.b.b #22	ENSGT00950000182974.a.a.a.a #23	ENSGT00940000156803 #24	ENSGT00940000158388	ENSGT00940000157452.s.b.b	ENSGT00390000012182	ENSGT00730000111366	ENSGT00940000157029	ENSGT00940000153669.b	ENSGT00940000154344.a	ENSGT00940000153299.d	ENSGT00940000160515	ENSGT00390000017980	ENSGT00940000164304	ENSGT01050000245018	ENSGT00940000159451
Neognathae_c	ANCESTRAL SPECIES	29	ENSGT00950000183035.a.a	ENSGT00390000015219	ENSGT00940000161737	ENSGT00530000063786.b	ENSGT00940000161221	ENSGT00940000160785	ENSGT00940000160946	ENSGT00730000112379	ENSGT00940000155374 #8	ENSGT00940000161201	ENSGT00940000159444	ENSGT00940000164188	ENSGT00940000162359	ENSGT00940000160971	ENSGT00940000161248	ENSGT00950000183189.a.b.b #22	ENSGT00950000182974.a.a.a.a #23	ENSGT00940000156803 #24	ENSGT00940000158388	ENSGT00940000157452.s.b.b	ENSGT00390000012182	ENSGT00730000111366	ENSGT00940000157029	ENSGT00940000153669.b	ENSGT00940000154344.a	ENSGT00940000153299.d	ENSGT00940000160515	ENSGT00390000017980	ENSGT00940000164304	ENSGT01050000245018	ENSGT00940000159451
Golden eagle	MODERN SPECIES	13	DNAAF6 (ENSACCG00020015319)	NUP62 (ENSACCG00020015364)	RBM41 (ENSACCG00020015416)	ENSACCG00020015440	CLDN2 (ENSACCG00020015455)	PRRG3 (ENSACCG00020015464)	ENSACCG00020015477	ENSACCG00020015491	CNGA2 (ENSACCG00020015500) #8	GABRE (ENSACCG00020015516)	GABRA3 (ENSACCG00020015527)	ENSACCG00020015541	SLITRK4 (ENSACCG00020015580)	SLITRK2 (ENSACCG00020015588)	ENSACCG00020015596	FMR1 (ENSACCG00020015619) #22	AFF2 (ENSACCG00020015651) #23	IDS (ENSACCG00020015672) #24	TMEM185A (ENSACCG00020015687)	ENSACCG00020015697	ENSACCG00020015706	MAMLD1 (ENSACCG00020015719)	MTM1 (ENSACCG00020015727)	MTMR1 (ENSACCG00020015918)	CD99L2 (ENSACCG00020016061)	HMGB3 (ENSACCG00020016077)	GPR50 (ENSACCG00020016089)	VMA21 (ENSACCG00020016099)	ENSACCG00020009464	TBC1D8B (ENSACCG00020009498)	RNF128 (ENSACCG00020009523)
Kakapo	MODERN SPECIES	1	FRMPD3 (ENSSHBG00005000729)	DNAAF6 (ENSSHBG00005000773)	NUP62 (ENSSHBG00005005448)	RBM41 (ENSSHBG00005005512)	CLDN2 (ENSSHBG00005005532)	PRRG3 (ENSSHBG00005005555)	ENSSHBG00005005604	CNGA2 (ENSSHBG00005005650) #8	ENSSHBG00005005676	GABRE (ENSSHBG00005005710)	GABRA3 (ENSSHBG00005005735)	ENSSHBG00005005759	SOX3 (ENSSHBG00005005768)	SLITRK4 (ENSSHBG00005005808)	SLITRK2 (ENSSHBG00005005894)	FMR1 (ENSSHBG00005005901) #22	AFF2 (ENSSHBG00005005977) #23	IDS (ENSSHBG00005006058) #24	TMEM185A (ENSSHBG00005006079)	ENSSHBG00005006102	MAMLD1 (ENSSHBG00005006121)	MTM1 (ENSSHBG00005006150)	MTMR1 (ENSSHBG00005006535)	CD99L2 (ENSSHBG00005010859)	ENSSHBG00005010875	HMGB3 (ENSSHBG00005010908)	ENSSHBG00005010970	ENSSHBG00005011027	TBC1D8B (ENSSHBG00005011055)	RNF128 (ENSSHBG00005011195)	RADX (ENSSHBG00005011738)
Passeriformes	ANCESTRAL SPECIES	30	ENSGT00950000183168.C	ENSGT00940000159334	ENSGT00940000153609.a	ENSGT00940000154651	ENSGT00390000003197	ENSGT00390000006492	ENSGT00940000159565	ENSGT00960000188821	ENSGT00940000159625	ENSGT01050000244937.a.b.a	ENSGT00940000159971	ENSGT00940000160039	ENSGT00940000160971	ENSGT00940000161248	ENSGT00940000162226.e.a	ENSGT00950000183189.a.b.b #22	ENSGT00950000182974.a.a.a.a #23	ENSGT00940000156803 #24	ENSGT00940000158388	ENSGT00390000012182	ENSGT00730000111366	ENSGT00940000157029	ENSGT00940000153669.b	ENSGT00940000154344.a	ENSGT00940000153299.d	ENSGT00940000160515	ENSGT00390000017980	ENSGT00940000164304	ENSGT00940000159451	ENSGT00940000158347
Great tit	MODERN SPECIES	24	SNX12 (ENSPMJG00000011466)	SLC7A3 (ENSPMJG00000011465)	ENSPMJG00000011464	TEX11 (ENSPMJG00000011463)	DLG3 (ENSPMJG00000011462)	GDPD2 (ENSPMJG00000011461)	HTR2C (ENSPMJG00000011458)	ENSPMJG00000011457	LRCH2 (ENSPMJG00000011456)	ENSPMJG00000011455	SLITRK4 (ENSPMJG00000011447)	SLITRK2 (ENSPMJG00000011443)	TSSK2 (ENSPMJG00000011441)	ENSPMJG00000011440	ENSPMJG00000011439	FMR1 (ENSPMJG00000011437) #22	AFF2 (ENSPMJG00000011434) #23	IDS (ENSPMJG00000011432) #24	TMEM185A (ENSPMJG00000011431)	ENSPMJG00000011430	ENSPMJG00000011429	ENSPMJG00000011428	MAMLD1 (ENSPMJG00000011427)	MTM1 (ENSPMJG00000011426)	MTMR1 (ENSPMJG00000011425)	CD99L2 (ENSPMJG00000011424)	GPR50 (ENSPMJG00000011423)	HMGB3 (ENSPMJG00000011422)	VMA21 (ENSPMJG00000011421)	ENSPMJG00000011420	TBC1D8B (ENSPMJG00000011419)
Passeriformes_d	ANCESTRAL SPECIES	31	ENSGT00950000183168.C	ENSGT00940000159334	ENSGT00940000153609.a	ENSGT00940000154651	ENSGT00390000003197	ENSGT00390000006492	ENSGT00940000159565	ENSGT00960000188821	ENSGT00940000159625	ENSGT01050000244937.a.b.a	ENSGT00940000159971	ENSGT00940000160039	ENSGT00940000160971	ENSGT00940000161248	ENSGT00940000162226.e.a	ENSGT00950000183189.a.b.b #22	ENSGT00950000182974.a.a.a.a #23	ENSGT00940000156803 #24	ENSGT00940000158388	ENSGT00390000012182	ENSGT00730000111366	ENSGT00940000157029	ENSGT00940000153669.b	ENSGT00940000154344.a	ENSGT00940000153299.d	ENSGT00940000160515	ENSGT00390000017980	ENSGT00940000164304	ENSGT00940000159451	ENSGT00940000158347
Flycatcher	MODERN SPECIES	23	TEX11 (ENSFALG00000011937)	ENSFALG00000025845	ENSFALG00000025914	ENSFALG00000026974	DLG3 (ENSFALG00000011970)	GDPD2 (ENSFALG00000012033)	HTR2C (ENSFALG00000026997)	ENSFALG00000023739	LRCH2 (ENSFALG00000012073)	ENSFALG00000012078	ENSFALG00000028898	ENSFALG00000026370	ENSFALG00000015204	SLITRK2 (ENSFALG00000015217)	ENSFALG00000015228	FMR1 (ENSFALG00000012085) #22	AFF2 (ENSFALG00000012089) #23	IDS (ENSFALG00000012098) #24	ENSFALG00000012106	ENSFALG00000012109	MAMLD1 (ENSFALG00000012116)	MTM1 (ENSFALG00000012122)	ENSFALG00000012126	ENSFALG00000023114	CD99L2 (ENSFALG00000012132)	HMGB3 (ENSFALG00000024484)	ENSFALG00000012147	VMA21 (ENSFALG00000012151)	ENSFALG00000000157	AMMECR1 (ENSFALG00000026986)	TMEM164 (ENSFALG00000000168)
Passeriformes_g	ANCESTRAL SPECIES	23	ENSGT00950000183168.C	ENSGT00940000159334	ENSGT00940000153609.a	ENSGT00940000154651	ENSGT00390000003197	ENSGT00390000006492	ENSGT00940000159565	ENSGT00960000188821	ENSGT00940000159625	ENSGT01050000244937.a.b.a	ENSGT00940000159971	ENSGT00940000160039	ENSGT00940000160971	ENSGT00940000161248	ENSGT00940000162226.e.a	ENSGT00950000183189.a.b.b #22	ENSGT00950000182974.a.a.a.a #23	ENSGT00940000156803 #24	ENSGT00940000158388	ENSGT00390000012182	ENSGT00730000111366	ENSGT00940000157029	ENSGT00940000153669.b	ENSGT00940000154344.a	ENSGT00940000153299.d	ENSGT00940000160515	ENSGT00390000017980	ENSGT00940000164304	ENSGT00940000159451	ENSGT00940000158347	ENSGT00950000182988.a.b.b.b
Medium ground finch	MODERN SPECIES	17	ENSGFOG00000000638	ENSGFOG00000000633	FOXO4 (ENSGFOG00000000630)	SNX12 (ENSGFOG00000000626)	SLC7A3 (ENSGFOG00000000616)	ENSGFOG00000000613	ENSGFOG00000000608	DLG3 (ENSGFOG00000014673)	GDPD2 (ENSGFOG00000014668)	HTR2C (ENSGFOG00000014665)	ENSGFOG00000014656	LRCH2 (ENSGFOG00000014648)	SLITRK4 (ENSGFOG00000014645)	SLITRK2 (ENSGFOG00000014641)	TSSK1B (ENSGFOG00000014639)	FMR1 (ENSGFOG00000014634) #22	AFF2 (ENSGFOG00000014623) #23	IDS (ENSGFOG00000014621) #24	TMEM185A (ENSGFOG00000014619)	ENSGFOG00000014616	MAMLD1 (ENSGFOG00000014615)	MTM1 (ENSGFOG00000014612)	MTMR1 (ENSGFOG00000014608)	CD99L2 (ENSGFOG00000014604)	HMGB3 (ENSGFOG00000014601)	ENSGFOG00000014600	VMA21 (ENSGFOG00000014598)	TBC1D8B (ENSGFOG00000014590)	RNF128 (ENSGFOG00000014578)	PAK3 (ENSGFOG00000014570)	CHRDL1 (ENSGFOG00000014565)
Passeroidea	ANCESTRAL SPECIES	25	ENSGT00950000183168.C	ENSGT00940000159334	ENSGT00940000153609.a	ENSGT00940000154651	ENSGT00390000003197	ENSGT00390000006492	ENSGT00940000159565	ENSGT00960000188821	ENSGT00940000159625	ENSGT01050000244937.a.b.a	ENSGT00940000159971	ENSGT00940000160039	ENSGT00940000160971	ENSGT00940000161248	ENSGT00940000162226.e.a	ENSGT00950000183189.a.b.b #22	ENSGT00950000182974.a.a.a.a #23	ENSGT00940000156803 #24	ENSGT00940000158388	ENSGT00390000012182	ENSGT00730000111366	ENSGT00940000157029	ENSGT00940000153669.b	ENSGT00940000154344.a	ENSGT00940000153299.d	ENSGT00940000160515	ENSGT00390000017980	ENSGT00940000164304	ENSGT00940000159451	ENSGT00940000158347	ENSGT00950000182988.a.b.b.b
Zebra finch	MODERN SPECIES	26	CLIC2 (ENSTGUG00000004925)	ENSTGUG00000004918	ENSTGUG00000004916	ENSTGUG00000004878	SHROOM4 (ENSTGUG00000020543)	BMP15 (ENSTGUG00000004869)	PHKA1 (ENSTGUG00000004827)	HDAC8 (ENSTGUG00000004801)	RPS4X (ENSTGUG00000022503)	ENSTGUG00000019393	ENSTGUG00000022518	ENSTGUG00000004773	SLITRK4 (ENSTGUG00000004770)	SLITRK2 (ENSTGUG00000004763)	TSSK2 (ENSTGUG00000004761)	FMR1 (ENSTGUG00000004735) #22	AFF2 (ENSTGUG00000004690) #23	IDS (ENSTGUG00000004678) #24	ENSTGUG00000004664	TMEM185A (ENSTGUG00000004667)	MAMLD1 (ENSTGUG00000004663)	MTM1 (ENSTGUG00000004636)	MTMR1 (ENSTGUG00000004586)	CD99L2 (ENSTGUG00000019800)	HMGB3 (ENSTGUG00000022829)	GPR50 (ENSTGUG00000004565)	ENSTGUG00000004465	TBC1D8B (ENSTGUG00000004500)	RNF128 (ENSTGUG00000004446)	CHRDL1 (ENSTGUG00000004370)	ENSTGUG00000004384
Common canary	MODERN SPECIES	13	ENSSCAG00000016264	ATP7A (ENSSCAG00000016266)	ENSSCAG00000016273	AMOT (ENSSCAG00000016276)	TRPC5 (ENSSCAG00000016285)	ENSSCAG00000016290	DCX (ENSSCAG00000016293)	CAPN6 (ENSSCAG00000016299)	ENSSCAG00000016310	HTR2C (ENSSCAG00000016313)	ENSSCAG00000016317	LRCH2 (ENSSCAG00000016321)	SLITRK4 (ENSSCAG00000016328)	SLITRK2 (ENSSCAG00000016333)	TSSK2 (ENSSCAG00000016335)	FMR1 (ENSSCAG00000016447) #22	AFF2 (ENSSCAG00000016564) #23	IDS (ENSSCAG00000016567) #24	TMEM185A (ENSSCAG00000016568)	ENSSCAG00000016569	MAMLD1 (ENSSCAG00000016574)	MTM1 (ENSSCAG00000016583)	MTMR1 (ENSSCAG00000016596)	CD99L2 (ENSSCAG00000016606)	ENSSCAG00000016612	HMGB3 (ENSSCAG00000016615)	ENSSCAG00000016620	VMA21 (ENSSCAG00000016624)	ENSSCAG00000016626	TBC1D8B (ENSSCAG00000016629)	RNF128 (ENSSCAG00000016633)
Galloanserae	ANCESTRAL SPECIES	21	ENSGT00390000015219	ENSGT00940000161737	ENSGT00530000063786.b	ENSGT00940000161221	ENSGT00940000160785	ENSGT00940000161952	ENSGT00940000160946	ENSGT00730000112379	ENSGT00940000155374 #8	ENSGT00940000161201	ENSGT00940000159444	ENSGT00940000164188	ENSGT00940000162359	ENSGT00940000160971	ENSGT00940000161248	ENSGT00950000183189.a.b.b #22	ENSGT00950000182974.a.a.a.a #23	ENSGT00940000156803 #24	ENSGT00940000158388	ENSGT00390000012182	ENSGT00730000111366	ENSGT00940000157029	ENSGT00940000153669.b	ENSGT00940000154344.a	ENSGT00940000153299.d	ENSGT00940000160515	ENSGT00390000017980	ENSGT00940000164304	ENSGT00940000159451	ENSGT00940000158347	ENSGT00390000005094
Anatidae	ANCESTRAL SPECIES	24	ENSGT00940000161604	ENSGT00950000182803.B.d.a	ENSGT00950000183035.a.a	ENSGT00390000015219	ENSGT00940000161737	ENSGT00530000063786.b	ENSGT00940000161221	ENSGT00940000160785	ENSGT00940000160946	ENSGT00730000112379	ENSGT00940000155374 #8	ENSGT00940000161201	ENSGT00940000159444	ENSGT00940000164188	ENSGT00940000161248	ENSGT00950000183189.a.b.b #22	ENSGT00950000182974.a.a.a.a #23	ENSGT00940000156803 #24	ENSGT00940000158388	ENSGT00390000012182	ENSGT00730000111366	ENSGT00940000157029	ENSGT00940000153669.b	ENSGT00940000154344.a	ENSGT00940000153299.d	ENSGT00940000160515	ENSGT00390000017980	ENSGT00940000164304	ENSGT00940000159451	ENSGT00940000158347	ENSGT00390000005094
Pink-footed goose	MODERN SPECIES	4	ENSABRG00000001064	ENSABRG00000001084	ENSABRG00000001094	DNAAF6 (ENSABRG00000001127)	NUP62 (ENSABRG00000001150)	RBM41 (ENSABRG00000001193)	MORC4 (ENSABRG00000001210)	CLDN2 (ENSABRG00000001305)	PRRG3 (ENSABRG00000001318)	ENSABRG00000001334	CNGA2 (ENSABRG00000001350) #8	GABRE (ENSABRG00000001367)	GABRA3 (ENSABRG00000001398)	ENSABRG00000001446	SLITRK2 (ENSABRG00000001893)	FMR1 (ENSABRG00000001945) #22	AFF2 (ENSABRG00000002038) #23	IDS (ENSABRG00000002199) #24	TMEM185A (ENSABRG00000002271)	ENSABRG00000002293	MAMLD1 (ENSABRG00000002311)	MTM1 (ENSABRG00000002328)	ENSABRG00000002363	ENSABRG00000002407	CD99L2 (ENSABRG00000002432)	HMGB3 (ENSABRG00000002448)	GPR50 (ENSABRG00000002461)	VMA21 (ENSABRG00000002474)	ENSABRG00000002486	TBC1D8B (ENSABRG00000002519)	RNF128 (ENSABRG00000002583)
Duck	MODERN SPECIES	1	ENSAPLG00000013596	ENSAPLG00000013521	ENSAPLG00000013441	ENSAPLG00000023224	NSDHL (ENSAPLG00000013097)	ENSAPLG00000012906	ENSAPLG00000012884	VAMP7 (ENSAPLG00000012771)	POLR1D (ENSAPLG00000012757)	ENSAPLG00000012679	ENSAPLG00000020012	SPRY3 (ENSAPLG00000012493)	TMLHE (ENSAPLG00000012485)	ENSAPLG00000016900	SLITRK2 (ENSAPLG00000001736)	FMR1 (ENSAPLG00000003811) #22	AFF2 (ENSAPLG00000003660) #23	IDS (ENSAPLG00000003521) #24	TMEM185A (ENSAPLG00000003446)	ENSAPLG00000003441	MAMLD1 (ENSAPLG00000003254)	MTM1 (ENSAPLG00000002352)	ENSAPLG00000000577	ENSAPLG00000030024	CD99L2 (ENSAPLG00000027711)	HMGB3 (ENSAPLG00000015880)	ENSAPLG00000001166	VMA21 (ENSAPLG00000025322)	ENSAPLG00000014933	TBC1D8B (ENSAPLG00000014354)	RNF128 (ENSAPLG00000014254)
Phasianidae	ANCESTRAL SPECIES	2	ENSGT00510000047351.b	ENSGT00390000011679	ENSGT00940000158467	ENSGT00940000157467	ENSGT00940000158122.e	ENSGT00940000155316	ENSGT00940000164636	ENSGT00940000156432.a	ENSGT00390000013075.b	ENSGT00940000156323.o.a	ENSGT00940000156323.o.b	ENSGT00530000063614.a.b	ENSGT00490000043413	ENSGT00940000155905.a	ENSGT00940000161248	ENSGT00950000183189.a.b.b #22	ENSGT00950000182974.a.a.a.a #23	ENSGT00940000156803 #24	ENSGT00940000158388	ENSGT00390000012182	ENSGT00730000111366	ENSGT00940000157029	ENSGT00940000153669.b	ENSGT00940000154344.a	ENSGT00940000153299.d	ENSGT00940000160515	ENSGT00390000017980	ENSGT00940000164304	ENSGT00940000159451	ENSGT00940000158347	ENSGT00390000005094
Japanese quail	MODERN SPECIES	22	RBM46 (ENSCJPG00005000468)	LRAT (ENSCJPG00005000455)	ENSCJPG00005000441	FGG (ENSCJPG00005000435)	ENSCJPG00005000432	FGB (ENSCJPG00005000428)	PLRG1 (ENSCJPG00005000424)	SFRP2 (ENSCJPG00005000412)	ENSCJPG00005000409	ENSCJPG00005000408	ENSCJPG00005000406	TMEM131L (ENSCJPG00005000378)	MND1 (ENSCJPG00005000370)	TRIM2 (ENSCJPG00005000363)	SLITRK2 (ENSCJPG00005000358)	FMR1 (ENSCJPG00005000330) #22	AFF2 (ENSCJPG00005000286) #23	IDS (ENSCJPG00005000265) #24	TMEM185A (ENSCJPG00005000261)	ENSCJPG00005000258	MAMLD1 (ENSCJPG00005000249)	MTM1 (ENSCJPG00005000244)	MTMR1 (ENSCJPG00005000238)	CD99L2 (ENSCJPG00005000101)	HMGB3 (ENSCJPG00005000075)	GPR50 (ENSCJPG00005000069)	VMA21 (ENSCJPG00005000062)	ENSCJPG00005018843	TBC1D8B (ENSCJPG00005018842)	RNF128 (ENSCJPG00005018841)	ENSCJPG00005018840
Phasianidae_b	ANCESTRAL SPECIES	27	ENSGT00510000047351.b	ENSGT00390000011679	ENSGT00940000158467	ENSGT00940000157467	ENSGT00940000158122.e	ENSGT00940000155316	ENSGT00940000164636	ENSGT00940000156432.a	ENSGT00390000013075.b	ENSGT00940000156323.o.a	ENSGT00940000156323.o.b	ENSGT00530000063614.a.b	ENSGT00490000043413	ENSGT00940000155905.a	ENSGT00940000161248	ENSGT00950000183189.a.b.b #22	ENSGT00390000007953	ENSGT00950000182974.a.a.a.a #23	ENSGT00940000156803 #24	ENSGT00390000012182	ENSGT00940000158388	ENSGT00730000111366	ENSGT00940000157029	ENSGT00940000153669.b	ENSGT00940000154344.a	ENSGT00940000153299.d	ENSGT00940000160515	ENSGT00390000017980	ENSGT00940000164304	ENSGT00940000159451	ENSGT00940000158347
Chicken	MODERN SPECIES	33	FGG (ENSGALG00010014956)	FGA (ENSGALG00010014972)	FGB (ENSGALG00010014944)	PLRG1 (ENSGALG00010014918)	ENSGALG00010014890	SFRP2 (ENSGALG00010014880)	TLR2 (ENSGALG00010014865)	TLR2A (ENSGALG00010014793)	ENSGALG00010014753	TMEM131L (ENSGALG00010014284)	MND1 (ENSGALG00010014173)	TRIM2 (ENSGALG00010014102)	SLITRK2 (ENSGALG00010014077)	ENSGALG00010013973	ENSGALG00010013938	FMR1 (ENSGALG00010016449) #22	FMR1NB (ENSGALG00010013923)	ENSGALG00010015912	AFF2 (ENSGALG00010013206) #23	ENSGALG00010013115	IDS (ENSGALG00010013162) #24	TMEM185A (ENSGALG00010013139)	ENSGALG00010013062	MAMLD1 (ENSGALG00010011617)	MTM1 (ENSGALG00010011485)	MTMR1 (ENSGALG00010011466)	CD99L2 (ENSGALG00010011441)	HMGB3 (ENSGALG00010011420)	GPR50 (ENSGALG00010011388)	VMA21 (ENSGALG00010011372)	ENSGALG00010012725
Turkey	MODERN SPECIES	29	ENSMGAG00000008030	ENSMGAG00000007992	ENSMGAG00000008052	ENSMGAG00000008054	ENSMGAG00000008055	ENSMGAG00000008077	ENSMGAG00000008089	ENSMGAG00000021483	ENSMGAG00000008117	ENSMGAG00000022120	ENSMGAG00000019161	ENSMGAG00000008180	ENSMGAG00000008205 #24	ENSMGAG00000008246 #23	ENSMGAG00000022917	ENSMGAG00000008270 #22	ENSMGAG00000007851 #29	ENSMGAG00000007840 #28	ENSMGAG00000007712 ##26	PGRMC1 (ENSMGAG00000007828)	ENSMGAG00000018516	SLC25A43 (ENSMGAG00000018131)	SLC25A5 (ENSMGAG00000007809)	STEEP1 (ENSMGAG00000007793)	UBE2A (ENSMGAG00000017165)	NKRF (ENSMGAG00000007747)	RPL39 (ENSMGAG00000007745)	UPF3B (ENSMGAG00000007728)	ENSMGAG00000007722	AKAP14 (ENSMGAG00000007709)	NKAP (ENSMGAG00000007693)
Australian saltwater crocodile	MODERN SPECIES	43	NUP62 (ENSCPRG00005007086)	RBM41 (ENSCPRG00005007080)	ENSCPRG00005007078	CLDN2 (ENSCPRG00005007070)	MORC4 (ENSCPRG00005007034)	PRRG3 (ENSCPRG00005007028)	ENSCPRG00005007026	CNGA2 (ENSCPRG00005007016) #8	ENSCPRG00005007011	ENSCPRG00005006996	GABRA3 (ENSCPRG00005006988)	ENSCPRG00005006977	SOX3 (ENSCPRG00005006971)	SLITRK4 (ENSCPRG00005006954)	SLITRK2 (ENSCPRG00005006946)	FMR1 (ENSCPRG00005006929) #22	AFF2 (ENSCPRG00005006908) #23	IDS (ENSCPRG00005006885) #24	TMEM185A (ENSCPRG00005006880)	ENSCPRG00005006858	ENSCPRG00005006854	MAMLD1 (ENSCPRG00005006835)	MTM1 (ENSCPRG00005006818)	MTMR1 (ENSCPRG00005006298)	CD99L2 (ENSCPRG00005006210)	HMGB3 (ENSCPRG00005006203)	GPR50 (ENSCPRG00005006198)	VMA21 (ENSCPRG00005006195)	ENSCPRG00005006188	ENSCPRG00005006185	TBC1D8B (ENSCPRG00005006176)
Mammalia	ANCESTRAL SPECIES	44	ENSGT00530000063353.b	ENSGT01070000253816.a.b	ENSGT00940000158723	ENSGT00940000153425	ENSGT00940000163390	ENSGT00940000162539	ENSGT00940000160788	ENSGT00940000163347	ENSGT00940000162313	ENSGT00940000159516	ENSGT00940000156974	ENSGT00940000158878	ENSGT00940000162359	ENSGT00940000160971	ENSGT00940000161248	ENSGT00950000183189.a.b.b #22	ENSGT00390000007953	ENSGT00950000182974.a.a.a.a #23	ENSGT00940000156803 #24	ENSGT00940000158388	ENSGT00940000157452	ENSGT00390000012182	ENSGT00730000111366	ENSGT00940000157029	ENSGT00940000153669.b	ENSGT00940000154344.a	ENSGT00940000153299.d	ENSGT00940000160515	ENSGT00390000017980	ENSGT00940000164304
Theria	ANCESTRAL SPECIES	34	ENSGT00530000063353.b	ENSGT01070000253816.a.b	ENSGT00940000158723	ENSGT00940000153425.a.a	ENSGT00940000163390	ENSGT00940000162539	ENSGT00940000160788	ENSGT00940000163347	ENSGT00940000162313	ENSGT00940000159516	ENSGT00940000156974	ENSGT00940000158878	ENSGT00940000162359	ENSGT00940000160971	ENSGT00940000161248	ENSGT00950000183189.a.b.b #22	ENSGT00390000007953	ENSGT00950000182974.a.a.a.a #23	ENSGT00940000156803 #24	ENSGT00940000158388	ENSGT00940000157452	ENSGT00940000161825	ENSGT00390000012182	ENSGT00730000111366	ENSGT00940000157029	ENSGT00940000153669.b	ENSGT00940000154344.a	ENSGT00940000153299.d	ENSGT00940000160515	ENSGT00390000017980	ENSGT00940000164304
Marsupialia	ANCESTRAL SPECIES	47														ENSGT00940000170860	ENSGT00390000002869.mb.b	ENSGT00950000183189.a.b.b #22	ENSGT00950000182974.a.a.a.a #23	ENSGT00940000166119	ENSGT00940000156803 #24	ENSGT00940000158388	ENSGT00940000157452	ENSGT00940000161825	ENSGT00390000012182	ENSGT00730000111366	ENSGT00940000157029	ENSGT00940000153669.b	ENSGT00940000154344.a	ENSGT00940000153299.d	ENSGT00940000160515	ENSGT00390000017980.qb.a	ENSGT00940000155374 #8
Marsupialia_b	ANCESTRAL SPECIES	38														ENSGT00940000170860	ENSGT00390000002869.mb.b	ENSGT00950000183189.a.b.b #22	ENSGT00950000182974.a.a.a.a #23	ENSGT00940000166119	ENSGT00940000156803 #24	ENSGT00940000158388	ENSGT00940000157452	ENSGT00940000161825	ENSGT00390000012182	ENSGT00390000004757.f	ENSGT00730000111366	ENSGT00940000157029	ENSGT00940000153669.b	ENSGT00940000154344.a	ENSGT00940000153299.d	ENSGT00940000160515	ENSGT00390000017980.qb.b
Diprotodontia	ANCESTRAL SPECIES	82														ENSGT00940000170860	ENSGT00390000002869.mb.b	ENSGT00950000183189.a.b.b #22	ENSGT00950000182974.a.a.a.a #23	ENSGT00940000166119	ENSGT00940000156803 #24	ENSGT00940000158388	ENSGT00940000157452	ENSGT00390000012182	ENSGT00390000004757.f	ENSGT00730000111366	ENSGT00940000157029	ENSGT00940000153669.b	ENSGT00940000154344.a	ENSGT00940000153299.d	ENSGT00940000160515	ENSGT00390000017980.qb.b	ENSGT00940000164304
Diprotodontia_a	ANCESTRAL SPECIES	78												ENSGT00940000165129	ENSGT00390000002428.a.f	ENSGT00940000170860	ENSGT00390000002869.mb.b	ENSGT00950000183189.a.b.b #22	ENSGT00940000162325.A	ENSGT00950000182974.a.a.a.a #23	ENSGT00940000166119	ENSGT00940000156803 #24	ENSGT00940000158388	ENSGT00940000157452	ENSGT00390000012182	ENSGT00390000004757.f	ENSGT00730000111366	ENSGT00940000157029	ENSGT00940000153669.b	ENSGT00940000154344.a	ENSGT00940000153299.d	ENSGT00940000160515	ENSGT00390000017980.qb.b
koala	MODERN SPECIES	259									ENSPCIG00000032068	ENSPCIG00000035326	ENSPCIG00000018632	SLITRK2 (ENSPCIG00000017825)	PRKACG (ENSPCIG00000015374)	ENSPCIG00000015366	ENSPCIG00000022487	FMR1 (ENSPCIG00000022498) #22	ENSPCIG00000032920	AFF2 (ENSPCIG00000030054) #23	ENSPCIG00000022367	IDS (ENSPCIG00000022372) #24
Common wonbat	MODERN SPECIES	1210											PRKACG (ENSVURG00010018426)	ENSVURG00010018420	ENSVURG00010018410	ENSVURG00010018399	ENSVURG00010018385	FMR1 (ENSVURG00010018346) #22	ENSVURG00010018323	AFF2 (ENSVURG00010018279) #23	ENSVURG00010018259	ENSVURG00010018254	IDS (ENSVURG00010018244) #24	TMEM185A (ENSVURG00010018223)	ENSVURG00010018219	ENSVURG00010018208
Wallaby	MODERN SPECIES	1175																ENSMEUG00000014280 #22
Tasmanian devil	MODERN SPECIES	21	ENSSHAG00000031918	ENSSHAG00000023320	F9 (ENSSHAG00000008930)	MCF2 (ENSSHAG00000009413)	ATP11C (ENSSHAG00000010576)	SOX3 (ENSSHAG00000007719)	ENSSHAG00000011738	SLITRK4 (ENSSHAG00000028656)	ENSSHAG00000031568	ENSSHAG00000001348	SLITRK2 (ENSSHAG00000031278)	ENSSHAG00000028924	ENSSHAG00000020828	ENSSHAG00000031221	ENSSHAG00000010068	FMR1 (ENSSHAG00000012940) #22	ENSSHAG00000029814	AFF2 (ENSSHAG00000009556) #23	ENSSHAG00000024523	ENSSHAG00000013671 #24	ENSSHAG00000024398	ENSSHAG00000028992	ENSSHAG00000025667	ENSSHAG00000014983	ENSSHAG00000024003	ENSSHAG00000016582	MTMR1 (ENSSHAG00000000486)	ENSSHAG00000022923	ENSSHAG00000023945	HMGB3 (ENSSHAG00000020696)	ENSSHAG00000008896
Opossum	MODERN SPECIES	627	RAP2C (ENSMODG00000015308)	MBNL3 (ENSMODG00000015304)	ENSMODG00000015297	GPC4 (ENSMODG00000015295)	GPC3 (ENSMODG00000015268)	ENSMODG00000015264	PHF6 (ENSMODG00000015259)	ENSMODG00000015247	PABIR2 (ENSMODG00000015195)	ENSMODG00000015185	ENSMODG00000015178	ENSMODG00000015168	ENSMODG00000028019	ENSMODG00000049437	ENSMODG00000043108	FMR1 (ENSMODG00000005550) #22	ENSMODG00000047891	ENSMODG00000027457	ENSMODG00000005557	AFF2 (ENSMODG00000005570) #23	ENSMODG00000050478	IDS (ENSMODG00000005597) #24	TMEM185A (ENSMODG00000005605)	HSFX (ENSMODG00000048982)	ENSMODG00000028107	ENSMODG00000005620	ENSMODG00000050538	ENSMODG00000005627	MTM1 (ENSMODG00000005671)	MTMR1 (ENSMODG00000005714)	ENSMODG00000028278
Eutheria	ANCESTRAL SPECIES	16	ENSGT00940000153425.a.a.b.b	ENSGT00940000163390	ENSGT00940000162539	ENSGT00940000160788	ENSGT00940000163347	ENSGT00940000162864	ENSGT00940000162313	ENSGT00940000159516	ENSGT00940000156974	ENSGT00940000158878	ENSGT00390000004226	ENSGT00940000162359	ENSGT00940000160971	ENSGT00940000161248	ENSGT00940000165847	ENSGT00950000183189.a.b.b #22	ENSGT00390000007953	ENSGT00950000182974.a.a.a.a #23	ENSGT00940000156803 #24	ENSGT00940000158388	ENSGT00940000163633	ENSGT00940000161825	ENSGT00390000012182	ENSGT00730000111366	ENSGT00940000157029	ENSGT00940000153669.b	ENSGT00940000154344.a	ENSGT00940000153299.d	ENSGT00940000160515	ENSGT00390000017980	ENSGT00940000160946
Boreoeutheria	ANCESTRAL SPECIES	11	ENSGT00940000163347	ENSGT00940000162864	ENSGT00940000162313	ENSGT00940000159516	ENSGT00940000156974	ENSGT00940000158878	ENSGT00390000004226	ENSGT00390000002886.b.b	ENSGT00940000162359	ENSGT00940000164798	ENSGT00940000162721	ENSGT00940000160971	ENSGT00940000161248	ENSGT00940000165847	ENSGT00910000146020	ENSGT00950000183189.a.b.b #22	ENSGT00390000007953	ENSGT00950000182974.a.a.a.a #23	ENSGT00970000197053	ENSGT00940000156803 #24	ENSGT00390000012182	ENSGT00940000161825	ENSGT00940000163633	ENSGT00940000158388	ENSGT00730000111366	ENSGT00940000157029	ENSGT00940000153669.b	ENSGT00940000154344.a	ENSGT00940000153299.d	ENSGT00940000160515	ENSGT00390000017980
Euarchontoglires	ANCESTRAL SPECIES	11	ENSGT00940000162539	ENSGT00940000160788	ENSGT00940000163347	ENSGT00940000162864	ENSGT00940000162313	ENSGT00940000159516	ENSGT00940000156974	ENSGT00940000158878	ENSGT00390000004226	ENSGT00390000002886.b.b	ENSGT00940000162359	ENSGT00940000164798	ENSGT00940000162721	ENSGT00940000160971	ENSGT00940000161248	ENSGT00950000183189.a.b.b #22	ENSGT00390000007953	ENSGT00950000182974.a.a.a.a #23	ENSGT00970000197053	ENSGT00940000156803 #24	ENSGT00940000163633	ENSGT00940000158388	ENSGT00940000161825	ENSGT00390000012182	ENSGT00730000111366	ENSGT00940000157029	ENSGT00940000153669.b	ENSGT00940000154344.a	ENSGT00940000153299.c.a.b	ENSGT00940000153299.d	ENSGT00940000160515
Euarchontoglires_A	ANCESTRAL SPECIES	11	ENSGT00940000163390	ENSGT00940000162539	ENSGT00940000160788	ENSGT00940000162864	ENSGT00940000162313	ENSGT00940000159516	ENSGT00940000156974	ENSGT00940000158878	ENSGT00390000004226	ENSGT00390000002886.b.b	ENSGT00940000162359	ENSGT00940000164798	ENSGT00940000162721	ENSGT00940000160971	ENSGT00940000161248	ENSGT00950000183189.a.b.b #22	ENSGT00390000007953	ENSGT00950000182974.a.a.a.a #23	ENSGT00940000156803 #24	ENSGT00390000012182	ENSGT00940000161825	ENSGT00940000158388	ENSGT00730000111366	ENSGT00940000157029	ENSGT00940000153669.b	ENSGT00940000154344.a	ENSGT00940000153299.c.a.b	ENSGT00940000160515	ENSGT00390000017980	ENSGT00530000064765	ENSGT00940000160946
Tree shrew	MODERN SPECIES	6068																FMR1 (ENSTBEG00000003253) #22
Glires	ANCESTRAL SPECIES	10	ENSGT00940000163390	ENSGT00940000162539	ENSGT00940000160788	ENSGT00940000162864	ENSGT00940000162313	ENSGT00940000159516	ENSGT00940000156974	ENSGT00940000158878	ENSGT00390000004226	ENSGT00390000002886.b.b	ENSGT00940000162359	ENSGT00940000164798	ENSGT00940000162721	ENSGT00940000160971	ENSGT00940000161248	ENSGT00950000183189.a.b.b #22	ENSGT00390000007953	ENSGT00950000182974.a.a.a.a #23	ENSGT00940000156803 #24	ENSGT00390000012182	ENSGT00940000161825	ENSGT00940000165994	ENSGT00940000158388	ENSGT00730000111366	ENSGT00940000157029	ENSGT00940000153669.b	ENSGT00940000154344.a	ENSGT00940000153299.c.a.b	ENSGT00940000160515	ENSGT00390000017980	ENSGT00530000064765
Lagomorpha	ANCESTRAL SPECIES	302														ENSGT00940000161248	ENSGT00940000165847	ENSGT00950000183189.a.b.b #22	ENSGT00950000182974.a.a.a.a #23	ENSGT00940000156803 #24	ENSGT00390000012182	ENSGT00940000161825
Rabbit	MODERN SPECIES	433	ENSOCUG00000012140	ENSOCUG00000025136	SOX3 (ENSOCUG00000016779)	ENSOCUG00000025072	ENSOCUG00000036101	ENSOCUG00000024673	LDOC1 (ENSOCUG00000023824)	ENSOCUG00000023139	SLITRK4 (ENSOCUG00000009653)	ENSOCUG00000021561	ENSOCUG00000036604	SLITRK2 (ENSOCUG00000002285)	ENSOCUG00000024125	ENSOCUG00000039152	ENSOCUG00000038207	FMR1 (ENSOCUG00000014621) #22	ENSOCUG00000029389	AFF2 (ENSOCUG00000013873) #23	ENSOCUG00000029180	IDS (ENSOCUG00000012026) #24	ENSOCUG00000006623	ENSOCUG00000025707	ENSOCUG00000024590	ENSOCUG00000012113	ENSOCUG00000007734	ENSOCUG00000039591	ENSOCUG00000037714
Pika	MODERN SPECIES	5362																ENSOPRG00000012759 #22
Rodentia	ANCESTRAL SPECIES	10	ENSGT00940000163390	ENSGT00940000162539	ENSGT00940000160788	ENSGT00940000162864	ENSGT00940000162313	ENSGT00940000159516	ENSGT00940000156974	ENSGT00940000158878	ENSGT00390000004226	ENSGT00390000002886.b.b	ENSGT00940000162359	ENSGT00940000164798	ENSGT00940000162721	ENSGT00940000160971	ENSGT00940000161248	ENSGT00950000183189.a.b.b #22	ENSGT00390000007953	ENSGT00950000182974.a.a.a.a #23	ENSGT00940000156803 #24	ENSGT00390000012182	ENSGT00940000161825	ENSGT00940000158388	ENSGT00730000111366	ENSGT00940000157029	ENSGT00940000153669.b	ENSGT00940000154344.a	ENSGT00940000153299.c.a.b	ENSGT00940000160515	ENSGT00390000017980	ENSGT00530000064765	ENSGT00940000160946
Rodentia_A	ANCESTRAL SPECIES	9	ENSGT00940000153425.a.a.b.b	ENSGT00940000162539	ENSGT00940000160788	ENSGT00940000162864.c	ENSGT00940000162313	ENSGT00940000159516	ENSGT00940000156974	ENSGT00940000158878	ENSGT00390000004226	ENSGT00390000002886.b.b	ENSGT00940000162359	ENSGT00940000164798	ENSGT00940000162721	ENSGT00940000160971	ENSGT00940000161248	ENSGT00950000183189.a.b.b #22	ENSGT00390000007953	ENSGT00950000182974.a.a.a.a #23	ENSGT00940000156803 #24	ENSGT00390000012182	ENSGT00940000161825	ENSGT00940000154972	ENSGT00940000158388	ENSGT00730000111366	ENSGT00940000157029	ENSGT00940000153669.b	ENSGT00940000154344.a	ENSGT00940000153299.c.a.b	ENSGT00940000160515	ENSGT00390000017980	ENSGT00940000160946
Sciuridae	ANCESTRAL SPECIES	27	ENSGT00940000153425.a.a.b.b	ENSGT00940000162539	ENSGT00940000160788	ENSGT00940000162864.c	ENSGT00940000162313	ENSGT00940000159516	ENSGT00940000156974	ENSGT00940000158878	ENSGT00390000004226	ENSGT00390000002886.b.b	ENSGT00940000162359	ENSGT00940000164798	ENSGT00940000162721	ENSGT00940000160971	ENSGT00940000161248	ENSGT00950000183189.a.b.b #22	ENSGT00390000007953	ENSGT00950000182974.a.a.a.a #23	ENSGT00940000156803 #24	ENSGT00940000158388	ENSGT00940000154972.gb.a	ENSGT00730000111366	ENSGT00940000157029	ENSGT00940000153669.b	ENSGT00940000154344.a	ENSGT00940000153299.c.a.b	ENSGT00940000160515	ENSGT00390000017980	ENSGT00940000160946	ENSGT00390000006832	ENSGT00940000155374 #8
Marmotini	ANCESTRAL SPECIES	72	ENSGT01070000253816.a.b	ENSGT00940000158723	ENSGT00940000153425.a.a.b.b	ENSGT00940000162539	ENSGT00940000160788	ENSGT00940000162864.c	ENSGT00940000162313	ENSGT00940000159516	ENSGT00940000156974	ENSGT00940000158878	ENSGT00390000004226	ENSGT00700000106222	ENSGT00940000160971	ENSGT00960000192900	ENSGT00940000161248	ENSGT00950000183189.a.b.b #22	ENSGT00390000007953	ENSGT00950000182974.a.a.a.a #23	ENSGT00940000156803 #24	ENSGT00940000158388	ENSGT00940000154972.gb.a	ENSGT00940000154972.gb.b.a	ENSGT00940000161825	ENSGT00390000012182	ENSGT00730000111366	ENSGT00940000157029	ENSGT00940000153669.b	ENSGT00940000154344.a	ENSGT00940000153299.c.a.b	ENSGT00940000160515	ENSGT00390000017980
Marmotini_b	ANCESTRAL SPECIES	104	ENSGT00530000063353.b	ENSGT01070000253816.a.b	ENSGT00940000158723	ENSGT00940000153425.a.a.b.b	ENSGT00940000162539	ENSGT00940000160788	ENSGT00940000162864.c	ENSGT00940000162313	ENSGT00940000159516	ENSGT00940000156974	ENSGT00940000158878	ENSGT00700000106222	ENSGT00940000160971	ENSGT00960000192900	ENSGT00940000161248	ENSGT00950000183189.a.b.b #22	ENSGT00950000182974.a.a.a.a #23	ENSGT00940000156803 #24	ENSGT00390000012182	ENSGT00940000161825	ENSGT00940000154972.gb.b.a	ENSGT00940000158388	ENSGT00940000154972.gb.a
Arctic ground squirrel	MODERN SPECIES	708																FMR1 (ENSUPAG00010008414) #22
Squirrel	MODERN SPECIES	113	VGLL1 (ENSSTOG00000012521)	CD40LG (ENSSTOG00000006163)	ENSSTOG00000033794	ARHGEF6 (ENSSTOG00000006178)	RBMX (ENSSTOG00000006211)	GPR101 (ENSSTOG00000002026)	ZIC3 (ENSSTOG00000024153)	FGF13 (ENSSTOG00000013920)	F9 (ENSSTOG00000010803)	MCF2 (ENSSTOG00000029050)	ATP11C (ENSSTOG00000010827)	LDOC1 (ENSSTOG00000019751)	SLITRK4 (ENSSTOG00000027854)	ENSSTOG00000025269	SLITRK2 (ENSSTOG00000003070)	FMR1 (ENSSTOG00000003260) #22	AFF2 (ENSSTOG00000004799) #23	IDS (ENSSTOG00000011740) #24
Alpin marmot	MODERN SPECIES	50	GPR101 (ENSMMMG00000012861)	ZIC3 (ENSMMMG00000012845)	ENSMMMG00000012790	FGF13 (ENSMMMG00000012768)	F9 (ENSMMMG00000012745)	ENSMMMG00000012728	ATP11C (ENSMMMG00000012599)	ENSMMMG00000012587	LDOC1 (ENSMMMG00000012582)	SLITRK4 (ENSMMMG00000012562)	ENSMMMG00000012552	SLITRK2 (ENSMMMG00000012547)	ENSMMMG00000012541	ENSMMMG00000012535	ENSMMMG00000012529	FMR1 (ENSMMMG00000012509) #22	ENSMMMG00000012501	AFF2 (ENSMMMG00000012476) #23	IDS (ENSMMMG00000012466) #24	ENSMMMG00000012460	ENSMMMG00000012453	ENSMMMG00000012439	ENSMMMG00000012418	ENSMMMG00000012401	ENSMMMG00000012387	MAMLD1 (ENSMMMG00000012347)	MTM1 (ENSMMMG00000012065)	MTMR1 (ENSMMMG00000012049)	CD99L2 (ENSMMMG00000012040)	ENSMMMG00000011985	ENSMMMG00000011974
Eurasian red squirrel	MODERN SPECIES	156	LDOC1 (ENSSVLG00005024361)	ENSSVLG00005024344	ENSSVLG00005024337	ENSSVLG00005024311	ENSSVLG00005024281	ENSSVLG00005024259	SLITRK4 (ENSSVLG00005024239)	ENSSVLG00005024221	ENSSVLG00005024178	ENSSVLG00005024153	ENSSVLG00005024138	SLITRK2 (ENSSVLG00005024126)	ENSSVLG00005024095	ENSSVLG00005024085	ENSSVLG00005024061	FMR1 (ENSSVLG00005023968) #22	FMR1NB (ENSSVLG00005023923)	AFF2 (ENSSVLG00005023603) #23	IDS (ENSSVLG00005023489) #24	ENSSVLG00005023440	ENSSVLG00005023405	ENSSVLG00005023391	TMEM185A (ENSSVLG00005023306)	ENSSVLG00005023272	ENSSVLG00005023222	ENSSVLG00005023183	ENSSVLG00005023146	MTM1 (ENSSVLG00005023047)	MTMR1 (ENSSVLG00005022934)	CD99L2 (ENSSVLG00005022834)	ENSSVLG00005022779
Hystricomorpha	ANCESTRAL SPECIES	54														ENSGT00940000160971	ENSGT00940000161248	ENSGT00950000183189.a.b.b #22	ENSGT00950000182974.a.a.a.a #23	ENSGT00940000156803 #24	ENSGT00940000158388	ENSGT00940000161825	ENSGT00390000012182	ENSGT00730000111366	ENSGT00940000157029	ENSGT00940000153669.b	ENSGT00940000154344.a	ENSGT00940000153299.c.a.b.f	ENSGT00940000160515	ENSGT00390000017980	ENSGT00940000160946	ENSGT00390000006832	ENSGT00940000155374 #8
Hystricomorpha_a	ANCESTRAL SPECIES	61																ENSGT00950000183189.a.b.b #22	ENSGT00950000182974.a.a.a.a #23	ENSGT00940000156803 #24	ENSGT00940000158388	ENSGT00940000161825	ENSGT00390000012182	ENSGT00730000111366	ENSGT00940000157029	ENSGT00940000153669.b	ENSGT00940000154344.a	ENSGT00940000153299.c.a.b.f	ENSGT00940000160515	ENSGT00390000017980	ENSGT00940000160946	ENSGT00390000006832	ENSGT00940000155374 #8
Guinea pig	MODERN SPECIES	84														ENSCPOG00000020563	ENSCPOG00000012523	FMR1 (ENSCPOG00000003723) #22	AFF2 (ENSCPOG00000011626) #23	IDS (ENSCPOG00000039334) #24	ENSCPOG00000031168
Hystricomorpha_b	ANCESTRAL SPECIES	84																ENSGT00950000183189.a.b.b #22	ENSGT00950000182974.a.a.a.a #23	ENSGT00940000156803 #24	ENSGT00390000012182	ENSGT00940000158388	ENSGT00730000111366	ENSGT00940000157029	ENSGT00940000153669.b	ENSGT00940000154344.a	ENSGT00940000153299.c.a.b.f	ENSGT00940000160515	ENSGT00390000017980	ENSGT00940000160946	ENSGT00390000006832	ENSGT00940000155374 #8	ENSGT00940000161201
Long-tailed chinchilla	MODERN SPECIES	205																FMR1 (ENSCLAG00000001233) #22	AFF2 (ENSCLAG00000003972) #23	IDS (ENSCLAG00000001342) #24	ENSCLAG00000001484	ENSCLAG00000001638	ENSCLAG00000001820	TMEM185A (ENSCLAG00000002110)	MAMLD1 (ENSCLAG00000002359)	MTM1 (ENSCLAG00000000881)	MTMR1 (ENSCLAG00000000560)	CD99L2 (ENSCLAG00000000614)	ENSCLAG00000000887	GPR50 (ENSCLAG00000000929)	VMA21 (ENSCLAG00000001014)	PRRG3 (ENSCLAG00000000825)	ENSCLAG00000000927
Degu	MODERN SPECIES	222											ENSODEG00000009047	ENSODEG00000009329	ENSODEG00000010050	ENSODEG00000008514	ENSODEG00000008653	FMR1 (ENSODEG00000008377) #22	ENSODEG00000009513	AFF2 (ENSODEG00000009737) #23	IDS (ENSODEG00000008960) #24	ENSODEG00000019829
Naked mole-rat female	MODERN SPECIES	31	ENSHGLG00000009095	ATP11C (ENSHGLG00000007759)	ENSHGLG00000047068	SOX3 (ENSHGLG00000039208)	ENSHGLG00000039059	ENSHGLG00000004407	ENSHGLG00000037583	ENSHGLG00000036529	ENSHGLG00000049672	ENSHGLG00000038876	ENSHGLG00000032750	ENSHGLG00000035566	SLITRK2 (ENSHGLG00000007935)	ENSHGLG00000045634	ENSHGLG00000040472	FMR1 (ENSHGLG00000000576) #22	ENSHGLG00000019716	ENSHGLG00000028863	AFF2 (ENSHGLG00000000634) #23	IDS (ENSHGLG00000049970) #24	ENSHGLG00000043323 #24	ENSHGLG00000035389	ENSHGLG00000002010	ENSHGLG00000047737	ENSHGLG00000049566	ENSHGLG00000046464	ENSHGLG00000049532	ENSHGLG00000000701	DKC1 (ENSHGLG00000000649)	MPP1 (ENSHGLG00000000629)	ENSHGLG00000000581
Rodentia_B	ANCESTRAL SPECIES	16	ENSGT00940000163390	ENSGT00940000162539	ENSGT00940000160788	ENSGT00940000162864	ENSGT00940000162313	ENSGT00940000159516	ENSGT00940000156974	ENSGT00940000158878	ENSGT00390000004226	ENSGT00390000002886.b.b	ENSGT00940000162359	ENSGT00940000162721	ENSGT00700000106222	ENSGT00940000160971	ENSGT00940000161248	ENSGT00950000183189.a.b.b #22	ENSGT00390000007953	ENSGT00950000182974.a.a.a.a #23	ENSGT00940000156803 #24	ENSGT00390000012182	ENSGT00940000158388	ENSGT00730000111366	ENSGT00940000157029	ENSGT00940000153669.b	ENSGT00940000154344.a	ENSGT00940000153299.c.a.b	ENSGT00940000160515	ENSGT00390000017980	ENSGT00530000064765	ENSGT00940000160946	ENSGT00390000006832
Kangaroo rat	MODERN SPECIES	408	Gpr101 (ENSDORG00000011583)	Zic3 (ENSDORG00000025481)	Fgf13 (ENSDORG00000023968)	F9 (ENSDORG00000003933)	Mcf2 (ENSDORG00000006306)	Atp11c (ENSDORG00000003661)	ENSDORG00000026314	ENSDORG00000027206	ENSDORG00000027706	Sox3 (ENSDORG00000027035)	Ldoc1 (ENSDORG00000011028)	ENSDORG00000026987	Slitrk4 (ENSDORG00000001489)	ENSDORG00000005920	Slitrk2 (ENSDORG00000000545)	Fmr1 (ENSDORG00000012501) #22	Aff2 (ENSDORG00000015215) #23	Ids (ENSDORG00000026027) #24	Tmem185a (ENSDORG00000015027)	ENSDORG00000010633	Mamld1 (ENSDORG00000027915)	Mtm1 (ENSDORG00000010820)	Mtmr1 (ENSDORG00000010821)	Cd99l2 (ENSDORG00000010822)	Hmgb3 (ENSDORG00000010826)	Gpr50 (ENSDORG00000000063)	Vma21 (ENSDORG00000026433)	Prrg3 (ENSDORG00000002364)	Fate1 (ENSDORG00000002365)	Cnga2 (ENSDORG00000002366) #8	ENSDORG00000005056
Myomorpha	ANCESTRAL SPECIES	6	ENSGT00940000163390	ENSGT00940000162539	ENSGT00940000160788	ENSGT00940000162864	ENSGT00940000162313	ENSGT00940000159516	ENSGT00940000156974	ENSGT00940000158878	ENSGT00390000004226	ENSGT00390000002886.b.b	ENSGT00940000162359	ENSGT00940000164798	ENSGT00940000162721	ENSGT00940000160971	ENSGT00940000161248	ENSGT00950000183189.a.b.b #22	ENSGT00390000007953	ENSGT00950000182974.a.a.a.a #23	ENSGT00940000156803 #24	ENSGT00390000012182	ENSGT00940000158388	ENSGT00730000111366	ENSGT00940000157029	ENSGT00940000153669.b	ENSGT00940000154344.a	ENSGT00940000153299.c.a.b	ENSGT00940000160515	ENSGT00390000017980	ENSGT00530000064765	ENSGT00940000160946	ENSGT00390000006832
Lesser Egyptian jerboa	MODERN SPECIES	76	ENSJJAG00000013053	Tent5a (ENSJJAG00000023080)	Ibtk (ENSJJAG00000018128)	Tpbg (ENSJJAG00000008383)	Ube2cbp (ENSJJAG00000010180)	Dop1a (ENSJJAG00000014556)	Pgm3 (ENSJJAG00000014123)	Rwdd2a (ENSJJAG00000023192)	Me1 (ENSJJAG00000022670)	Snap91 (ENSJJAG00000020722)	Ripply2 (ENSJJAG00000019746)	Cyb5r4 (ENSJJAG00000010025)	Mrap2 (ENSJJAG00000014346)	Cep162 (ENSJJAG00000013634)	Tbx18 (ENSJJAG00000021701)	ENSJJAG00000008538 #22	Nt5e (ENSJJAG00000022214)	Snx14 (ENSJJAG00000010546) ##10	Syncrip (ENSJJAG00000014190)	Zfp949 (ENSJJAG00000011037)	ENSJJAG00000020312	ENSJJAG00000013247	Minar1 (ENSJJAG00000023967)	Tmed3 (ENSJJAG00000022070)	ENSJJAG00000004605	Rasgrf1 (ENSJJAG00000020927)	Ctsh (ENSJJAG00000009132)	ENSJJAG00000023946	Adamts7 (ENSJJAG00000009587)	ENSJJAG00000022301	Cib2 (ENSJJAG00000015817)
Muroidea	ANCESTRAL SPECIES	13	ENSGT00940000163390	ENSGT00940000162539	ENSGT00940000160788	ENSGT00940000162864	ENSGT00940000162313	ENSGT00940000159516	ENSGT00940000156974	ENSGT00940000158878	ENSGT00390000004226	ENSGT00390000002886.b.b	ENSGT00940000162359	ENSGT00940000162721	ENSGT00700000106222	ENSGT00940000160971	ENSGT00940000161248	ENSGT00950000183189.a.b.b #22	ENSGT00390000007953	ENSGT00950000182974.a.a.a.a #23	ENSGT00940000156803 #24	ENSGT00390000012182	ENSGT00940000158388	ENSGT00730000111366	ENSGT00940000157029	ENSGT00940000153669.b	ENSGT00940000154344.a	ENSGT00940000153299.c.a.b	ENSGT00940000160515	ENSGT00390000017980	ENSGT00530000064765	ENSGT00940000160946	ENSGT00390000006832
Upper Galilee mountains blind mole rat	MODERN SPECIES	981																Fmr1 (ENSNGAG00000020908) #22	Aff2 (ENSNGAG00000020660) #23	Ids (ENSNGAG00000001103) #24	Eola1 (ENSNGAG00000011115)
Muroidea_A	ANCESTRAL SPECIES	7	ENSGT00940000162313	ENSGT00940000159516	ENSGT00940000156974	ENSGT00940000158878	ENSGT00390000004226	ENSGT00390000002886.b.b	ENSGT00940000162359	ENSGT00940000162721	ENSGT00940000154972.fb	ENSGT00700000106222	ENSGT00940000154972.eb.b.a.a	ENSGT00940000160971	ENSGT00410000025802.g.b.q.b	ENSGT00860000136220	ENSGT00940000161248	ENSGT00950000183189.a.b.b #22	ENSGT00390000007953	ENSGT00950000182974.a.a.a.a #23	ENSGT00940000156803 #24	ENSGT00390000012182	ENSGT00940000158388	ENSGT00730000111366	ENSGT00940000157029	ENSGT00940000153669.b	ENSGT00940000154344.a	ENSGT00940000153299.c.a.b	ENSGT00940000160515	ENSGT00390000017980	ENSGT00530000064765	ENSGT00940000160946	ENSGT00390000006832
Murinae	ANCESTRAL SPECIES	14	ENSGT00940000158878	ENSGT00390000004226	ENSGT00390000002886.b.b	ENSGT00940000162359	ENSGT00940000162721	ENSGT00940000154972.fb	ENSGT00520000060073	ENSGT00700000106222	ENSGT00940000154972.eb.b.a.a	ENSGT00940000160971	ENSGT00410000025802.g.b.q.b	ENSGT00860000136220	ENSGT00940000161248	ENSGT00940000165847	ENSGT00800000125275	ENSGT00950000183189.a.b.b #22	ENSGT00390000007953	ENSGT00520000056437	ENSGT00950000182974.a.a.a.a #23	ENSGT00940000156803 #24	ENSGT00390000012182	ENSGT00940000158388	ENSGT00730000111366	ENSGT00940000157029	ENSGT00940000153669.b	ENSGT00940000154344.a	ENSGT00940000153299.c.a.b	ENSGT00940000160515	ENSGT00390000017980	ENSGT00530000064765	ENSGT00940000160946
Mus	ANCESTRAL SPECIES	9	ENSGT00940000158878	ENSGT00390000004226	ENSGT00390000002886.b.b	ENSGT00940000162359	ENSGT00940000162721	ENSGT00940000154972.fb	ENSGT00520000060073	ENSGT00700000106222	ENSGT00940000154972.eb.b.a.a	ENSGT00940000160971	ENSGT00410000025802.g.b.q.b	ENSGT00860000136220	ENSGT00940000161248	ENSGT00390000000062.x.b.l.a	ENSGT00800000125275	ENSGT00950000183189.a.b.b #22	ENSGT00390000007953	ENSGT00520000056437	ENSGT00950000182974.a.a.a.a #23	ENSGT00940000156803 #24	ENSGT00390000012182	ENSGT00940000158388	ENSGT00730000111366	ENSGT00940000157029	ENSGT00940000153669.b	ENSGT00940000154344.a	ENSGT00940000153299.c.a.b	ENSGT00940000160515	ENSGT00390000017980	ENSGT00530000064765	ENSGT00940000160946
Mus_A	ANCESTRAL SPECIES	15	ENSGT00940000158878	ENSGT00390000004226	ENSGT00390000002886.b.b	ENSGT00940000162359	ENSGT00940000162721	ENSGT00940000154972.fb	ENSGT00520000060073	ENSGT00700000106222	ENSGT00940000154972.eb.b.a.a	ENSGT00940000160971	ENSGT00410000025802.g.b.q.b	ENSGT00860000136220	ENSGT00940000161248	ENSGT00390000000062.x.b.l.a	ENSGT00800000125275	ENSGT00950000183189.a.b.b #22	ENSGT00390000007953	ENSGT00520000056437	ENSGT00950000182974.a.a.a.a #23	ENSGT00940000156803 #24	ENSGT00390000012182	ENSGT00940000158388	ENSGT00730000111366	ENSGT00940000157029	ENSGT00940000153669.b	ENSGT00940000154344.a	ENSGT00940000153299.c.a.b	ENSGT00940000160515	ENSGT00390000017980	ENSGT00530000064765	ENSGT00940000160946
Mus_B	ANCESTRAL SPECIES	14	ENSGT00940000158878	ENSGT00390000004226	ENSGT00390000002886.b.b	ENSGT00940000162359	ENSGT00940000162721	ENSGT00940000154972.fb	ENSGT00520000060073	ENSGT00700000106222	ENSGT00940000154972.eb.b.a.a	ENSGT00940000160971	ENSGT00410000025802.g.b.q.b	ENSGT00860000136220	ENSGT00940000161248	ENSGT00390000000062.x.b.l.a	ENSGT00800000125275	ENSGT00950000183189.a.b.b #22	ENSGT00390000007953	ENSGT00520000056437	ENSGT00950000182974.a.a.a.a #23	ENSGT00940000156803 #24	ENSGT00390000012182.lb	ENSGT00940000158388	ENSGT00730000111366	ENSGT00940000157029	ENSGT00940000153669.b	ENSGT00940000154344.a	ENSGT00940000153299.c.a.b	ENSGT00940000160515	ENSGT00390000017980	ENSGT00530000064765	ENSGT00940000160946
Mouse	MODERN SPECIES	37	Atp11c (ENSMUSG00000062949)	Gm7073 (ENSMUSG00000079583)	Gm715 (ENSMUSG00000082226)	Sox3 (ENSMUSG00000045179)	Ldoc1 (ENSMUSG00000057615)	Magec2 (ENSMUSG00000045330)	Gm6760 (ENSMUSG00000079579)	Magea9 (ENSMUSG00000031179)	Slitrk4 (ENSMUSG00000046699)	Ctag2 (ENSMUSG00000031181)	4930447F04Rik (ENSMUSG00000031182)	Slitrk2 (ENSMUSG00000036790)	Gm1140 (ENSMUSG00000079578)	Gm14692 (ENSMUSG00000079577)	4933436I01Rik (ENSMUSG00000025288)	Fmr1 (ENSMUSG00000000838) #22	Fmr1nb (ENSMUSG00000062170)	Styx-ps (ENSMUSG00000071748)	Aff2 (ENSMUSG00000031189) #23	1700020N15Rik (ENSMUSG00000059690)	Ids (ENSMUSG00000035847) #24	Eola1 (ENSMUSG00000045237)	Tmem185a (ENSMUSG00000073139)	Mamld1 (ENSMUSG00000059401)	Mtm1 (ENSMUSG00000031337)	Mtmr1 (ENSMUSG00000015214)	Cd99l2 (ENSMUSG00000035776)	Hmgb3 (ENSMUSG00000015217)	Gpr50 (ENSMUSG00000056380)	Vma21 (ENSMUSG00000073131)	Gm1141 (ENSMUSG00000073130)
Mus_C	ANCESTRAL SPECIES	27	ENSGT00940000156974	ENSGT00940000158878	ENSGT00390000004226	ENSGT00940000162359	ENSGT00940000162721	ENSGT00940000154972.fb	ENSGT00520000060073	ENSGT00700000106222	ENSGT00940000154972.eb.b.a.a	ENSGT00940000160971	ENSGT00410000025802.g.b.q.b	ENSGT00860000136220	ENSGT00940000161248	ENSGT00390000000062.x.b.l.a	ENSGT00800000125275	ENSGT00950000183189.a.b.b #22	ENSGT00390000007953	ENSGT00520000056437	ENSGT00950000182974.a.a.a.a #23	ENSGT00940000156803 #24	ENSGT00940000158388	ENSGT00730000111366	ENSGT00940000157029	ENSGT00940000153669.b	ENSGT00940000154344.a	ENSGT00940000153299.c.a.b	ENSGT00940000160515	ENSGT00390000017980	ENSGT00530000064765	ENSGT00940000160946	ENSGT00390000006832
spretus	MODERN SPECIES	19	Mcf2 (MGP_SPRETEiJ_G0034260)	Atp11c (MGP_SPRETEiJ_G0034261)	Gm7073 (MGP_SPRETEiJ_G0034262)	Sox3 (MGP_SPRETEiJ_G0034263)	Ldoc1 (MGP_SPRETEiJ_G0034264)	Magec2 (MGP_SPRETEiJ_G0034265)	MGP_SPRETEiJ_G0034266	Gm6760 (MGP_SPRETEiJ_G0034267)	Magea9 (MGP_SPRETEiJ_G0034268)	Slitrk4 (MGP_SPRETEiJ_G0034269)	Ctag2 (MGP_SPRETEiJ_G0034270)	4930447F04Rik (MGP_SPRETEiJ_G0034271)	Slitrk2 (MGP_SPRETEiJ_G0034272)	MGP_SPRETEiJ_G0034273	4933436I01Rik (MGP_SPRETEiJ_G0034274)	Fmr1 (MGP_SPRETEiJ_G0034275) #22	Fmr1nb (MGP_SPRETEiJ_G0034276)	1700020N15Rik (MGP_SPRETEiJ_G0034277)	Aff2 (MGP_SPRETEiJ_G0034278) #23	Ids (MGP_SPRETEiJ_G0034279) #24	Tmem185a (MGP_SPRETEiJ_G0034280)	Mamld1 (MGP_SPRETEiJ_G0034281)	Mtm1 (MGP_SPRETEiJ_G0034282)	Mtmr1 (MGP_SPRETEiJ_G0034283)	Cd99l2 (MGP_SPRETEiJ_G0034284)	Gpr50 (MGP_SPRETEiJ_G0034285)	MGP_SPRETEiJ_G0034286	MGP_SPRETEiJ_G0034287	Prrg3 (MGP_SPRETEiJ_G0034288)	Fate1 (MGP_SPRETEiJ_G0034289)	Cnga2 (MGP_SPRETEiJ_G0034290) #8
Steppe mouse	MODERN SPECIES	1752																Fmr1 (ENSMSIG00000025099) #22
Ryukyu mouse	MODERN SPECIES	19	Mcf2 (MGP_CAROLIEiJ_G0033106)	Atp11c (MGP_CAROLIEiJ_G0033107)	Gm7073 (MGP_CAROLIEiJ_G0033108)	Sox3 (MGP_CAROLIEiJ_G0033109)	MGP_CAROLIEiJ_G0033110	Ldoc1 (MGP_CAROLIEiJ_G0033111)	Magec2 (MGP_CAROLIEiJ_G0033112)	MGP_CAROLIEiJ_G0033113	Gm6760 (MGP_CAROLIEiJ_G0033114)	Magea9 (MGP_CAROLIEiJ_G0033115)	Slitrk4 (MGP_CAROLIEiJ_G0033116)	Ctag2 (MGP_CAROLIEiJ_G0033117)	4930447F04Rik (MGP_CAROLIEiJ_G0033118)	Slitrk2 (MGP_CAROLIEiJ_G0033119)	4933436I01Rik (MGP_CAROLIEiJ_G0033120)	Fmr1 (MGP_CAROLIEiJ_G0033121) #22	Fmr1nb (MGP_CAROLIEiJ_G0033122)	Aff2 (MGP_CAROLIEiJ_G0033123) #23	1700020N15Rik (MGP_CAROLIEiJ_G0033124)	Ids (MGP_CAROLIEiJ_G0033125) #24	Eola1 (MGP_CAROLIEiJ_G0033126)	Tmem185a (MGP_CAROLIEiJ_G0033127)	Mtm1 (MGP_CAROLIEiJ_G0033128)	Mamld1 (MGP_CAROLIEiJ_G0033129)	Mtmr1 (MGP_CAROLIEiJ_G0033130)	Cd99l2 (MGP_CAROLIEiJ_G0033131)	Gpr50 (MGP_CAROLIEiJ_G0033132)	Vma21 (MGP_CAROLIEiJ_G0033133)	MGP_CAROLIEiJ_G0033134	Prrg3 (MGP_CAROLIEiJ_G0033135)	MGP_CAROLIEiJ_G0033136
Shrew mouse	MODERN SPECIES	23	MGP_PahariEiJ_G0031648	Atp11c (MGP_PahariEiJ_G0031649)	Gm7073 (MGP_PahariEiJ_G0031650)	Sox3 (MGP_PahariEiJ_G0031651)	Ldoc1 (MGP_PahariEiJ_G0031652)	Magec2 (MGP_PahariEiJ_G0031653)	MGP_PahariEiJ_G0031654	Gm6760 (MGP_PahariEiJ_G0031655)	Magea9 (MGP_PahariEiJ_G0031656)	Slitrk4 (MGP_PahariEiJ_G0031657)	Ctag2 (MGP_PahariEiJ_G0031658)	4930447F04Rik (MGP_PahariEiJ_G0031659)	Slitrk2 (MGP_PahariEiJ_G0031660)	MGP_PahariEiJ_G0031661	MGP_PahariEiJ_G0031662	Fmr1 (MGP_PahariEiJ_G0031663) #22	MGP_PahariEiJ_G0031664	MGP_PahariEiJ_G0031665	Aff2 (MGP_PahariEiJ_G0031666) #23	Ids (MGP_PahariEiJ_G0031667) #24	Eola1 (MGP_PahariEiJ_G0031668)	Tmem185a (MGP_PahariEiJ_G0031669)	Mamld1 (MGP_PahariEiJ_G0031670)	Mtm1 (MGP_PahariEiJ_G0031671)	Mtmr1 (MGP_PahariEiJ_G0031672)	Cd99l2 (MGP_PahariEiJ_G0031673)	Gpr50 (MGP_PahariEiJ_G0031674)	MGP_PahariEiJ_G0031675	MGP_PahariEiJ_G0031676	Prrg3 (MGP_PahariEiJ_G0031677)	Fate1 (MGP_PahariEiJ_G0031678)
Rat	MODERN SPECIES	46	ENSRNOG00000067343	AABR07042071.1 (ENSRNOG00000046097)	Magea9 (ENSRNOG00000023016)	Slitrk4 (ENSRNOG00000062783)	Ctag2 (ENSRNOG00000012560)	AABR07042226.1 (ENSRNOG00000058521)	LOC120099343 (ENSRNOG00000066658)	Slitrk2 (ENSRNOG00000011562)	LOC689396 (ENSRNOG00000032418)	ENSRNOG00000067514	AABR07042293.1 (ENSRNOG00000037381)	LOC100912196 (ENSRNOG00000062315)	Fam9c (ENSRNOG00000069253)	ENSRNOG00000069396	AABR07042418.1 (ENSRNOG00000051726)	Fmr1 (ENSRNOG00000057464) #22	Fmr1nb (ENSRNOG00000053397)	LOC689600 (ENSRNOG00000067249)	Aff2 (ENSRNOG00000052572) #23	LOC100360413 (ENSRNOG00000051885)	LOC689600 (ENSRNOG00000064273)	Ids (ENSRNOG00000001465) #24	Eola2 (ENSRNOG00000063254)	LOC120099181 (ENSRNOG00000050915)	Tmem185a (ENSRNOG00000011047)	Hmgb3 (ENSRNOG00000011096)	Rpsa-ps4 (ENSRNOG00000022882)	Gpr50 (ENSRNOG00000011335)	Vma21 (ENSRNOG00000048606)	RGD1561481 (ENSRNOG00000064535)	RGD1308750 (ENSRNOG00000048356)
Cricetidae	ANCESTRAL SPECIES	8	ENSGT00940000159516	ENSGT00940000156974	ENSGT00940000158878	ENSGT00390000004226	ENSGT00390000002886.b.b	ENSGT00940000162359	ENSGT00940000162721	ENSGT00940000154972.fb	ENSGT00700000106222	ENSGT00940000154972.eb.b.a.a	ENSGT00940000160971	ENSGT00410000025802.g.b.q.b	ENSGT00860000136220	ENSGT00940000161248	ENSGT00390000000062.x.b.l.a	ENSGT00950000183189.a.b.b #22	ENSGT00950000182974.a.a.a.a #23	ENSGT00940000156803 #24	ENSGT00390000012182	ENSGT00940000158388	ENSGT00940000161825	ENSGT00730000111366	ENSGT00940000157029	ENSGT00940000153669.b	ENSGT00940000154344.a	ENSGT00940000153299.c.a.b	ENSGT00940000160515	ENSGT00390000017980	ENSGT00940000160946	ENSGT00390000006832	ENSGT00940000155374 #8
Cricetinae	ANCESTRAL SPECIES	29	ENSGT00940000162313	ENSGT00940000159516	ENSGT00940000156974	ENSGT00940000158878	ENSGT00390000004226	ENSGT00940000162359	ENSGT00940000162721	ENSGT00940000154972.fb	ENSGT00700000106222	ENSGT00940000154972.eb.b.a.a	ENSGT00940000160971	ENSGT00410000025802.g.b.q.b	ENSGT00860000136220	ENSGT00940000161248	ENSGT00390000000062.x.b.l.a	ENSGT00950000183189.a.b.b #22	ENSGT00950000182974.a.a.a.a #23	ENSGT00940000156803 #24	ENSGT00390000012182	ENSGT00940000158388	ENSGT00940000161825	ENSGT00730000111366	ENSGT00940000157029	ENSGT00940000153669.b	ENSGT00940000154344.a	ENSGT00940000153299.c.a.b	ENSGT00940000160515	ENSGT00390000017980	ENSGT00940000160946	ENSGT00390000006832	ENSGT00940000155374 #8
Chinese hamster chok1gshd	MODERN SPECIES	16	Mcf2 (ENSCGRG00001021302)	Atp11c (ENSCGRG00001020356)	Gm7073 (ENSCGRG00001022592)	Sox3 (ENSCGRG00001011737)	Ldoc1 (ENSCGRG00001009400)	Magec2 (ENSCGRG00001021825)	Gm6760 (ENSCGRG00001016891)	Magea9 (ENSCGRG00001005254)	Slitrk4 (ENSCGRG00001005530)	Ctag2 (ENSCGRG00001024950)	4930447F04Rik (ENSCGRG00001021811)	Slitrk2 (ENSCGRG00001010877)	ENSCGRG00001016997	ENSCGRG00001000104	ENSCGRG00001021550	Fmr1 (ENSCGRG00001012567) #22	Aff2 (ENSCGRG00001012965) #23	Ids (ENSCGRG00001002360) #24	Eola1 (ENSCGRG00001014157)	Tmem185a (ENSCGRG00001025064)	ENSCGRG00001018034	ENSCGRG00001013662	Mamld1 (ENSCGRG00001000251)	Mtm1 (ENSCGRG00001024851)	Mtmr1 (ENSCGRG00001000727)	Cd99l2 (ENSCGRG00001011321)	Hmgb3 (ENSCGRG00001015455)	Gpr50 (ENSCGRG00001014176)	VMA21 (ENSCGRG00001018865)	Fate1 (ENSCGRG00001018187)	Prrg3 (ENSCGRG00001015221)
Golden Hamster	DUPLICATION
Golden Hamster	MODERN SPECIES	260																ENSMAUG00000000336 #22
Golden Hamster	MODERN SPECIES	823														ENSMAUG00000009117	ENSMAUG00000008582	ENSMAUG00000005814 #22	ENSMAUG00000002322	ENSMAUG00000002038	Aff2 (ENSMAUG00000015604) #23	Ids (ENSMAUG00000013501) #24
Cricetidae_B	ANCESTRAL SPECIES	28	ENSGT00940000159516	ENSGT00940000156974	ENSGT00940000158878	ENSGT00390000002886.b.b	ENSGT00940000162359	ENSGT00940000164798	ENSGT00940000162721	ENSGT00700000106038.A	ENSGT00940000154972.fb	ENSGT00700000106222	ENSGT00940000154972.eb.b.a.a	ENSGT00940000160971	ENSGT00410000025802.g.b.q.b	ENSGT00860000136220	ENSGT00940000161248	ENSGT00950000183189.a.b.b #22	ENSGT00950000182974.a.a.a.a #23	ENSGT00940000156803 #24	ENSGT00390000012182	ENSGT00940000158388	ENSGT00730000111366	ENSGT00940000157029	ENSGT00940000153669.b	ENSGT00940000154344.a	ENSGT00940000153299.c.a.b	ENSGT00940000160515	ENSGT00390000017980	ENSGT01050000246733	ENSGT00940000160946	ENSGT00390000006832	ENSGT00940000155374 #8
Prairie vole	MODERN SPECIES	142													4930447F04Rik (ENSMOCG00000000394)	Slitrk2 (ENSMOCG00000002229)	ENSMOCG00000006594	Fmr1 (ENSMOCG00000005190) #22	ENSMOCG00000000123	ENSMOCG00000007736
Northern American deer mouse	MODERN SPECIES	94																Fmr1 (ENSPEMG00000017439) #22
Primates	ANCESTRAL SPECIES	23	ENSGT00940000153425.a.a.b.b	ENSGT00940000153425.b	ENSGT00940000163390	ENSGT00940000162539	ENSGT00940000160788	ENSGT00940000163347	ENSGT00940000159516	ENSGT00940000156974	ENSGT00940000158878	ENSGT00390000004226	ENSGT00390000002886.b.b	ENSGT00940000162359	ENSGT00940000162721	ENSGT00940000160971	ENSGT00940000161248	ENSGT00950000183189.a.b.b #22	ENSGT00390000007953	ENSGT00950000182974.a.a.a.a #23	ENSGT00970000197053	ENSGT00940000156803 #24	ENSGT00940000163633	ENSGT00940000158388	ENSGT00940000161825	ENSGT00390000012182	ENSGT00730000111366	ENSGT00940000157029	ENSGT00940000153669.b	ENSGT00940000154344.a	ENSGT00940000153299.c.b.b.b	ENSGT00940000153299.d.v.a	ENSGT00940000160515
Strepsirrhini	ANCESTRAL SPECIES	76															ENSGT00910000146020	ENSGT00950000183189.a.b.b #22	ENSGT00950000182974.a.a.a.a #23	ENSGT00940000156803 #24
Lemuriformes	ANCESTRAL SPECIES	53	ENSGT01100000263512.b.b.b	ENSGT00390000009902	ENSGT00530000063353.b	ENSGT01070000253816.a.b	ENSGT00940000158723	ENSGT00940000153425.a.b	ENSGT00940000160788	ENSGT00940000162864	ENSGT00940000163347	ENSGT00940000159516	ENSGT00940000156974	ENSGT00940000158878	ENSGT00390000004226	ENSGT00940000164798	ENSGT00940000162721	ENSGT00950000183189.a.b.b #22	ENSGT00910000146020	ENSGT00950000182974.a.a.a.a #23	ENSGT00940000156803 #24
Lemuriformes_a	ANCESTRAL SPECIES	321															ENSGT00910000146020	ENSGT00950000183189.a.b.b #22	ENSGT00390000007953
Coquerels sifaka	MODERN SPECIES	1048			ENSPCOG00000013349	F9 (ENSPCOG00000021350)	MCF2 (ENSPCOG00000017797)	ATP11C (ENSPCOG00000016658)	CXorf66 (ENSPCOG00000016018)	ENSPCOG00000021671	LDOC1 (ENSPCOG00000026405)	ENSPCOG00000025982	ENSPCOG00000010819	SLITRK4 (ENSPCOG00000001878)	ENSPCOG00000026333	ENSPCOG00000022948	ENSPCOG00000023359	FMR1 (ENSPCOG00000028651) #22	ENSPCOG00000028627	AFF2 (ENSPCOG00000013963) #23	ENSPCOG00000021033	ENSPCOG00000027307	IDS (ENSPCOG00000027114) #24
Greater bamboo lemur	MODERN SPECIES	727															ENSPSMG00000001251	FMR1 (ENSPSMG00000000944) #22	ENSPSMG00000000715
Mouse lemur	MODERN SPECIES	169	ENSMICG00000048125	ENSMICG00000034505	ZNF75D (ENSMICG00000005209)	ENSMICG00000031062	ENSMICG00000035619	CT55 (ENSMICG00000047795)	ZNF449 (ENSMICG00000003164)	ENSMICG00000043469	ENSMICG00000031214	INTS6L (ENSMICG00000014196)	ENSMICG00000047091	SLC9A6 (ENSMICG00000011746)	ENSMICG00000009342	MAP7D3 (ENSMICG00000037426)	ADGRG4 (ENSMICG00000035091)	FMR1 (ENSMICG00000000838) #22	ENSMICG00000045581	ENSMICG00000032523	ENSMICG00000004052	AFF2 (ENSMICG00000011580) #23	ENSMICG00000036932	ENSMICG00000030676	ENSMICG00000037019	IDS (ENSMICG00000002745) #24	ENSMICG00000045504	ENSMICG00000032768	ENSMICG00000047230	ENSMICG00000033654	ENSMICG00000045027	ENSMICG00000047372	ENSMICG00000029869
Bushbaby	MODERN SPECIES	346																FMR1 (ENSOGAG00000013061) #22	AFF2 (ENSOGAG00000016333) #23	IDS (ENSOGAG00000007604) #24	ENSOGAG00000024943 #24
Haplorrhini	ANCESTRAL SPECIES	33	ENSGT00940000153425.a.a.b.b	ENSGT00940000153425.b	ENSGT00940000163390	ENSGT00940000162539	ENSGT00940000160788	ENSGT00940000163347	ENSGT00940000159516	ENSGT00940000156974	ENSGT00940000158878	ENSGT00390000004226	ENSGT00390000002886.b.b	ENSGT00940000162359	ENSGT00940000162721	ENSGT00940000160971	ENSGT00940000161248	ENSGT00950000183189.a.b.b #22	ENSGT00390000007953	ENSGT00950000182974.a.a.a.a #23	ENSGT00970000197053	ENSGT00940000156803 #24	ENSGT00940000158388	ENSGT00940000163633	ENSGT00940000165994	ENSGT00940000161825	ENSGT00390000012182	ENSGT00730000111366	ENSGT00940000157029	ENSGT00940000153669.b	ENSGT00940000154344.a	ENSGT00940000153299.c.b.b.b	ENSGT00940000153299.d.v.a
Tarsier	MODERN SPECIES	2955																FMR1 (ENSTSYG00000014392) #22
Simiiformes	ANCESTRAL SPECIES	9	ENSGT00940000159516	ENSGT00940000156974	ENSGT00940000158878	ENSGT00390000004226	ENSGT00390000002886.b.b	ENSGT00940000162359	ENSGT00940000162721	ENSGT00910000146818	ENSGT00940000164981	ENSGT00940000164535	ENSGT00940000163956	ENSGT00940000160971	ENSGT00940000164738	ENSGT00940000161248	ENSGT00510000055407	ENSGT00950000183189.a.b.b #22	ENSGT00390000007953	ENSGT00950000182974.a.a.a.a #23	ENSGT00970000197053	ENSGT00940000156803 #24	ENSGT00940000158388	ENSGT00940000163633	ENSGT00940000165994	ENSGT00940000161825	ENSGT00390000012182	ENSGT00730000111366	ENSGT00940000157029	ENSGT00940000153669.b	ENSGT00940000154344.a	ENSGT00940000153299.c.b.b.b	ENSGT00940000153299.d.v.a
Platyrrhini	ANCESTRAL SPECIES	42	ENSGT00940000159516	ENSGT00940000156974	ENSGT00940000158878	ENSGT00390000004226	ENSGT00390000002886.b.b	ENSGT00940000162359	ENSGT00940000162721	ENSGT00940000164981	ENSGT00940000164535	ENSGT00940000163956.a.a	ENSGT00940000160971	ENSGT00940000163956.b	ENSGT00940000164738	ENSGT00940000161248	ENSGT00510000055407	ENSGT00950000183189.a.b.b #22	ENSGT00390000007953	ENSGT00950000182974.a.a.a.a #23	ENSGT00940000156803 #24	ENSGT00390000012182	ENSGT00940000161825	ENSGT00940000165994	ENSGT00940000163633	ENSGT00940000158388	ENSGT00940000164167	ENSGT00730000111366	ENSGT00940000157029	ENSGT00940000153669.b	ENSGT00940000154344.a	ENSGT00940000153299.d.v.a	ENSGT00940000160515
Mas night monkey	MODERN SPECIES	1229													SLITRK2 (ENSANAG00000018916)	ENSANAG00000024700	ENSANAG00000034827	FMR1 (ENSANAG00000026715) #22	FMR1NB (ENSANAG00000029333)	AFF2 (ENSANAG00000023509) #23	ENSANAG00000009320	IDS (ENSANAG00000029668) #24	ENSANAG00000022415	ENSANAG00000031481	TMEM185A (ENSANAG00000028488)	ENSANAG00000021783
Cebidae	ANCESTRAL SPECIES	27	ENSGT00940000158878	ENSGT00390000004226	ENSGT00390000002886.b.b	ENSGT00940000162359	ENSGT00940000162721	ENSGT00940000163956.a.a	ENSGT00940000164981	ENSGT00940000164535	ENSGT00940000163956.a.b	ENSGT00940000160971	ENSGT00940000164738.b	ENSGT00940000163956.b	ENSGT00940000164738.a	ENSGT00940000161248	ENSGT00510000055407	ENSGT00950000183189.a.b.b #22	ENSGT00390000007953	ENSGT00950000182974.a.a.a.a #23	ENSGT00940000156803 #24	ENSGT00390000012182	ENSGT00940000161825	ENSGT00940000165994	ENSGT00940000163633	ENSGT00940000158388	ENSGT00940000164167	ENSGT00730000111366	ENSGT00940000157029	ENSGT00940000153669.b	ENSGT00910000147788	ENSGT00940000154344.a	ENSGT00940000153299.d.v.a
Marmoset	MODERN SPECIES	78	ENSCJAG00000082101	ENSCJAG00000008338	ENSCJAG00000072609	ENSCJAG00000069732	ENSCJAG00000069623	ENSCJAG00000039147	ENSCJAG00000062154	ENSCJAG00000083411	ENSCJAG00000063948	ENSCJAG00000055806	ENSCJAG00000071453	SLITRK2 (ENSCJAG00000005992)	ENSCJAG00000084196	ENSCJAG00000064398	ENSCJAG00000086074	FMR1 (ENSCJAG00000003925) #22	ENSCJAG00000049119	AFF2 (ENSCJAG00000000061) #23	ENSCJAG00000084004	ENSCJAG00000079254	IDS (ENSCJAG00000000073) #24	ENSCJAG00000067463	ENSCJAG00000023322	ENSCJAG00000004097	ENSCJAG00000075434	ENSCJAG00000075916	ENSCJAG00000085048	ENSCJAG00000072760	ENSCJAG00000083945	MAMLD1 (ENSCJAG00000004077)	MTM1 (ENSCJAG00000004040)
Cebidae_a	ANCESTRAL SPECIES	137									ENSGT00940000164981	ENSGT00940000164535	ENSGT00940000163956.a.a	ENSGT00940000160971	ENSGT00940000164738.a	ENSGT00940000161248	ENSGT00510000055407	ENSGT00950000183189.a.b.b #22	ENSGT00390000007953	ENSGT00950000182974.a.a.a.a #23	ENSGT00940000156803 #24
Bolivian squirrel monkey	MODERN SPECIES	152						ENSSBOG00000034528	ENSSBOG00000028654	ENSSBOG00000032098	ENSSBOG00000023205	SLITRK4 (ENSSBOG00000011515)	ENSSBOG00000028384	ENSSBOG00000026820	ENSSBOG00000025014	SLITRK2 (ENSSBOG00000014161)	ENSSBOG00000006758	FMR1 (ENSSBOG00000026623) #22	ENSSBOG00000030685	ERRFI1 (ENSSBOG00000019344)	AFF2 (ENSSBOG00000020604) #23	ENSSBOG00000004475	IDS (ENSSBOG00000017176) #24
Capuchin	MODERN SPECIES	504																FMR1 (ENSCCAG00000021737) #22	FMR1NB (ENSCCAG00000020669)	AFF2 (ENSCCAG00000025994) #23
Catarrhini	ANCESTRAL SPECIES	12	ENSGT00390000004226	ENSGT00390000002886.b.b	ENSGT00940000162359	ENSGT00940000162721	ENSGT00940000164981	ENSGT00940000164535.b	ENSGT00940000164535.a	ENSGT00940000165112	ENSGT00940000163956.c	ENSGT00940000160971	ENSGT00940000163956.d	ENSGT00940000164738	ENSGT00940000161248	ENSGT00510000055407	ENSGT00850000133588	ENSGT00950000183189.a.b.b #22	ENSGT00390000007953	ENSGT00910000148734	ENSGT00950000182974.a.a.a.a #23	ENSGT00970000197053	ENSGT00940000156803 #24	ENSGT00940000158388	ENSGT00940000163633	ENSGT00940000165994	ENSGT00940000165348	ENSGT00940000161825.c	ENSGT00390000012182	ENSGT00730000111366	ENSGT00940000157029	ENSGT00940000153669.b	ENSGT00940000154344.a
Hominoidea	ANCESTRAL SPECIES	29	ENSGT00940000162359	ENSGT00390000013647	ENSGT01010000223978	ENSGT00940000162721	ENSGT00940000164981	ENSGT00940000164535.b	ENSGT00940000164535.a	ENSGT00940000165112	ENSGT00940000163956.c	ENSGT00940000160971	ENSGT00940000163956.d	ENSGT00940000164738	ENSGT00940000161248	ENSGT00510000055407	ENSGT00850000133588	ENSGT00950000183189.a.b.b #22	ENSGT00390000007953	ENSGT00910000148734	ENSGT00950000182974.a.a.a.a #23	ENSGT00970000197053	ENSGT00940000156803 #24	ENSGT00940000164167	ENSGT00940000158388	ENSGT00940000163633	ENSGT00940000165994	ENSGT00940000165348	ENSGT00940000161825.c	ENSGT00390000012182	ENSGT00540000073886	ENSGT00390000009760.d	ENSGT00940000153239.B.j.a
Hominidae	ANCESTRAL SPECIES	8	ENSGT00390000013647	ENSGT01010000223978	ENSGT00910000146818	ENSGT00940000164981	ENSGT00940000164535.b	ENSGT00940000164535.a	ENSGT00940000165112	ENSGT00940000163956.c	ENSGT00940000160971	ENSGT00940000163956.d	ENSGT00940000164738.e	ENSGT00940000161248	ENSGT00510000055407	ENSGT00850000133588	ENSGT00910000146770	ENSGT00950000183189.a.b.b #22	ENSGT00390000007953	ENSGT00910000148734	ENSGT00950000182974.a.a.a.a #23	ENSGT00970000197053	ENSGT00940000156803 #24	ENSGT00940000164167	ENSGT00940000158388	ENSGT00940000163633	ENSGT00940000165994	ENSGT00940000165348	ENSGT00940000161825.c	ENSGT00390000012182	ENSGT00540000073886	ENSGT00390000009760.d	ENSGT00940000153239.B.j.a
Homo/Pan/Gorilla group	ANCESTRAL SPECIES	9	ENSGT00390000002886.b.b	ENSGT00940000162359	ENSGT00390000013647	ENSGT01010000223978	ENSGT00910000146818	ENSGT00940000164981	ENSGT00940000164535.b	ENSGT00940000164535.a	ENSGT00940000165112	ENSGT00940000163956.c	ENSGT00940000160971	ENSGT00940000163956.d	ENSGT00940000164738.e	ENSGT00940000161248	ENSGT00510000055407	ENSGT00950000183189.a.b.b #22	ENSGT00390000007953	ENSGT00390000018324.f	ENSGT00950000182974.a.a.a.a #23	ENSGT00940000156803.g.b #24	ENSGT00970000197053	ENSGT00940000156803.g.a #24	ENSGT00390000012182	ENSGT00940000161825.c	ENSGT00940000165348	ENSGT00940000165994	ENSGT00940000163633	ENSGT00940000158388	ENSGT00940000164167	ENSGT00540000073886	ENSGT00390000009760.d
Gorilla	MODERN SPECIES	523	ENSGGOG00000037930	ENSGGOG00000013898	ENSGGOG00000041264	ENSGGOG00000042700	ENSGGOG00000026272	ENSGGOG00000002221	ENSGGOG00000008654	ENSGGOG00000037757	MAGEC3 (ENSGGOG00000024624)	ENSGGOG00000037743	MAGEC2 (ENSGGOG00000001664)	ENSGGOG00000024051	SPANXN3 (ENSGGOG00000008690)	SLITRK4 (ENSGGOG00000026538)	ENSGGOG00000040180	FMR1 (ENSGGOG00000010373) #22	FMR1NB (ENSGGOG00000011460)	ENSGGOG00000022472	AFF2 (ENSGGOG00000010543) #23	ENSGGOG00000006912 #24	ENSGGOG00000036241 #24	ENSGGOG00000040386	ENSGGOG00000022043	ENSGGOG00000022734	TMEM185A (ENSGGOG00000024268)	MAGEA11 (ENSGGOG00000027734)	ENSGGOG00000022770	ENSGGOG00000039658	ENSGGOG00000022151	ENSGGOG00000026303	ENSGGOG00000016675
Homo/Pan group	ANCESTRAL SPECIES	9	ENSGT00390000004226	ENSGT00390000002886.b.b	ENSGT00940000162359	ENSGT00730000111796	ENSGT00910000146818	ENSGT00940000164981	ENSGT00940000164535.b	ENSGT00940000164535.a	ENSGT00940000165112	ENSGT00940000163956.c	ENSGT00940000160971	ENSGT00940000163956.d	ENSGT00940000164738.e	ENSGT00940000161248	ENSGT00510000055407	ENSGT00950000183189.a.b.b #22	ENSGT00390000007953	ENSGT00390000018324.f	ENSGT00950000182974.a.a.a.a #23	ENSGT00970000197053	ENSGT00940000156803.g.a #24	ENSGT00390000012182	ENSGT00940000161825.c	ENSGT00940000165348	ENSGT00940000165994	ENSGT00940000163633	ENSGT00940000158388	ENSGT00940000164167	ENSGT00540000073886	ENSGT00390000009760.d	ENSGT00940000153239.B.j.a
Human	MODERN SPECIES	1827	SPANXA1 (ENSG00000198021)	SPANXA2 (ENSG00000203926)	SPANXD (ENSG00000196406)	MAGEC3 (ENSG00000165509)	MAGEC1 (ENSG00000155495)	MAGEC2 (ENSG00000046774)	SPANXN4 (ENSG00000189326)	SPANXN3 (ENSG00000189252)	SLITRK4 (ENSG00000179542)	SPANXN2 (ENSG00000268988)	UBE2NL (ENSG00000276380)	SPANXN1 (ENSG00000203923)	SLITRK2 (ENSG00000185985)	CXorf51B (ENSG00000235699)	CXorf51A (ENSG00000224440)	FMR1 (ENSG00000102081) #22	FMR1NB (ENSG00000176988)	AFF2 (ENSG00000155966) #23	ENSG00000287585	IDS (ENSG00000010404) #24	ENSG00000241489	EOLA1 (ENSG00000197620)	HSFX3 (ENSG00000283697)	MAGEA9B (ENSG00000267978)	HSFX2 (ENSG00000268738)	TMEM185A (ENSG00000269556)	MAGEA11 (ENSG00000185247)	HSFX1 (ENSG00000171116)	MAGEA9 (ENSG00000123584)	MAGEA8 (ENSG00000156009)	EOLA2 (ENSG00000197021)
Pan	ANCESTRAL SPECIES	6	ENSGT00940000153147.m.a.a.a.a.b.a.a.a	ENSGT00390000002886.b.b	ENSGT00940000162359	ENSGT00730000111796	ENSGT00910000146818	ENSGT00940000164981	ENSGT00940000164535.b	ENSGT00940000164535.a	ENSGT00940000165112	ENSGT00940000163956.c	ENSGT00940000160971	ENSGT00940000163956.d	ENSGT00530000063646.b.v.b	ENSGT00940000161248	ENSGT00510000055407	ENSGT00950000183189.a.b.b #22	ENSGT00390000007953	ENSGT00390000018324.f	ENSGT00950000182974.a.a.a.a #23	ENSGT00940000156803.g.a #24	ENSGT00940000165348	ENSGT00940000165994	ENSGT00940000163633	ENSGT00940000158388	ENSGT00940000164167	ENSGT00940000161825.c	ENSGT00390000012182	ENSGT00540000073886	ENSGT00390000009760.d	ENSGT00940000153239.B.j.a	ENSGT00730000111366
Chimpanzee	MODERN SPECIES	972	ENSPTRG00000022341	MAGEC2 (ENSPTRG00000028182)	ENSPTRG00000022342	SPANXN3 (ENSPTRG00000049779)	SLITRK4 (ENSPTRG00000028181)	ENSPTRG00000047088	SPANXN2 (ENSPTRG00000032493)	UBE2NL (ENSPTRG00000028180)	ENSPTRG00000043973	SPANXN1 (ENSPTRG00000052448)	ENSPTRG00000023037	ENSPTRG00000051875	ENSPTRG00000047380	ENSPTRG00000043109	ENSPTRG00000049129	FMR1 (ENSPTRG00000022349) #22	FMR1NB (ENSPTRG00000022350)	ENSPTRG00000042813	ENSPTRG00000044524	AFF2 (ENSPTRG00000022353) #23	IDS (ENSPTRG00000051038) #24	ENSPTRG00000050308 #24	MAGEA11 (ENSPTRG00000022358)	MAGEA9 (ENSPTRG00000044086)	TMEM185A (ENSPTRG00000046347)	ENSPTRG00000022359	ENSPTRG00000050162	MAGEA8 (ENSPTRG00000051529)	ENSPTRG00000042941	ENSPTRG00000049979	ENSPTRG00000022357
Bonobo	MODERN SPECIES	369	CXorf66 (ENSPPAG00000038036)	ENSPPAG00000037228	ENSPPAG00000023819	ENSPPAG00000025131	ENSPPAG00000026521	ENSPPAG00000030721	ENSPPAG00000026388	MAGEC2 (ENSPPAG00000026474)	ENSPPAG00000036672	SPANXN3 (ENSPPAG00000038428)	SLITRK4 (ENSPPAG00000013354)	ENSPPAG00000041875	ENSPPAG00000042792	SLITRK2 (ENSPPAG00000026296)	ENSPPAG00000024208	FMR1 (ENSPPAG00000041836) #22	FMR1NB (ENSPPAG00000032015)	ENSPPAG00000038877	ENSPPAG00000043764	AFF2 (ENSPPAG00000040251) #23	IDS (ENSPPAG00000039933) #24	ENSPPAG00000032708	TMEM185A (ENSPPAG00000041974)	MAGEA11 (ENSPPAG00000029720)	ENSPPAG00000025248	ENSPPAG00000033335	ENSPPAG00000040929	ENSPPAG00000043892	ENSPPAG00000043936	ENSPPAG00000044034	MTM1 (ENSPPAG00000036663)
Orangutan	MODERN SPECIES	242	ATP11C (ENSPPYG00000020781)	CXorf66 (ENSPPYG00000020782)	SOX3 (ENSPPYG00000020784)	ENSPPYG00000020786	ENSPPYG00000038810	ENSPPYG00000020788	ENSPPYG00000020923	MAGEC2 (ENSPPYG00000020790)	ENSPPYG00000020791	ENSPPYG00000031195	SLITRK4 (ENSPPYG00000020792)	UBE2NL (ENSPPYG00000020793)	SLITRK2 (ENSPPYG00000020795)	ENSPPYG00000037692	ENSPPYG00000033432	FMR1 (ENSPPYG00000020797) #22	FMR1NB (ENSPPYG00000020798)	ENSPPYG00000020799	AFF2 (ENSPPYG00000020800) #23	ENSPPYG00000040118	IDS (ENSPPYG00000020802) #24	ENSPPYG00000020803	ENSPPYG00000032611	ENSPPYG00000020804	ENSPPYG00000032567	ENSPPYG00000036522	ENSPPYG00000033696	ENSPPYG00000030759	ENSPPYG00000020908	MAGEA8 (ENSPPYG00000020811)	ENSPPYG00000030750
Cercopithecidae	ANCESTRAL SPECIES	19	ENSGT00390000004226	ENSGT00390000002886.b.b	ENSGT00940000162359	ENSGT00940000162721	ENSGT00940000164981	ENSGT00940000164535.b	ENSGT00940000164535.a	ENSGT00940000165112	ENSGT00940000163956.c.b	ENSGT00940000160971	ENSGT00940000163956.d	ENSGT00530000063646.b.v.b	ENSGT00940000161248	ENSGT00510000055407	ENSGT00850000133588	ENSGT00950000183189.a.b.b #22	ENSGT00390000007953	ENSGT00910000148734	ENSGT00950000182974.a.a.a.a #23	ENSGT00970000197053	ENSGT00940000156803 #24	ENSGT00940000158388	ENSGT00940000163633	ENSGT00940000165994	ENSGT00940000165348	ENSGT00940000161825.c	ENSGT00390000012182	ENSGT00540000073886	ENSGT00390000009760.d	ENSGT00730000111366	ENSGT00940000157029
Vervet Monkey	MODERN SPECIES	203	ENSCSAG00000000290	LDOC1 (ENSCSAG00000000289)	ENSCSAG00000007328	MAGEC1 (ENSCSAG00000007324)	ENSCSAG00000007320	MAGEC2 (ENSCSAG00000000288)	SPANXN4 (ENSCSAG00000007309)	ENSCSAG00000007303	SLITRK4 (ENSCSAG00000000287)	ENSCSAG00000007297	ENSCSAG00000000286	ENSCSAG00000000285	ENSCSAG00000007290	SLITRK2 (ENSCSAG00000000284)	ENSCSAG00000000283	FMR1 (ENSCSAG00000007281) #22	FMR1NB (ENSCSAG00000007271)	AFF2 (ENSCSAG00000007248) #23	IDS (ENSCSAG00000007199) #24	MAGEA11 (ENSCSAG00000007193)	TMEM185A (ENSCSAG00000007189)	ENSCSAG00000007182	ENSCSAG00000000282	MAGEA8 (ENSCSAG00000000530)	ENSCSAG00000007176	MAMLD1 (ENSCSAG00000007173)	MTM1 (ENSCSAG00000007161)	MTMR1 (ENSCSAG00000007129)	CD99L2 (ENSCSAG00000007121)	GPR50 (ENSCSAG00000007114)	ENSCSAG00000007104
Cercopithecinae_a	ANCESTRAL SPECIES	11	ENSGT00390000004226	ENSGT00390000002886.b.b	ENSGT00940000162359	ENSGT00390000013647	ENSGT01010000223978	ENSGT00940000164535.b.b	ENSGT00940000164535.a	ENSGT00940000165112	ENSGT00940000163956.c.b	ENSGT00940000160971	ENSGT00940000163956.d	ENSGT00530000063646.b.v.b	ENSGT00940000161248	ENSGT00950000182878.b.a.c.a.a.b.i.a	ENSGT00850000133588	ENSGT00950000183189.a.b.b #22	ENSGT00390000007953	ENSGT00910000148734	ENSGT00950000182974.a.a.a.a #23	ENSGT00970000197053	ENSGT00940000156803 #24	ENSGT00940000158388	ENSGT00940000163633	ENSGT00940000165994	ENSGT00940000165348	ENSGT00940000161825.c	ENSGT00390000012182.ab	ENSGT00540000073886	ENSGT00390000009760.d	ENSGT00940000161825.d	ENSGT00390000012182.`b
Macaca	ANCESTRAL SPECIES	13	ENSGT00890000139472.a.b	ENSGT00940000162721	ENSGT00940000164981	ENSGT00940000164535.b.a	ENSGT00940000164535.b.b	ENSGT00940000164535.a	ENSGT00940000165112	ENSGT00940000163956.c.b	ENSGT00940000160971	ENSGT00390000012976.c.b.b.b.a.a.a	ENSGT00940000163956.c.a	ENSGT00940000164738.d	ENSGT00940000161248	ENSGT00950000182878.b.a.c.a.a.b.i.a	ENSGT00850000133588	ENSGT00950000183189.a.b.b #22	ENSGT00390000007953	ENSGT00910000148734	ENSGT00950000182974.a.a.a.a #23	ENSGT00970000197053	ENSGT00940000156803 #24	ENSGT00390000012182.ab	ENSGT00940000161825.c	ENSGT00940000165348	ENSGT00940000165994	ENSGT00940000163633	ENSGT00940000158388	ENSGT00950000182841.b.a.a.b.a.a.a.b	ENSGT00940000161825.d	ENSGT00390000012182.`b	ENSGT00390000009760.d
Pig-tailed macaque	MODERN SPECIES	115								SPANXN4 (ENSMNEG00000028813)	SPANXN3 (ENSMNEG00000042901)	SLITRK4 (ENSMNEG00000025856)	ENSMNEG00000030111	ENSMNEG00000029139	SLITRK2 (ENSMNEG00000012473)	ENSMNEG00000017805	ENSMNEG00000035418	FMR1 (ENSMNEG00000024342) #22	FMR1NB (ENSMNEG00000036711)	ENSMNEG00000036630	AFF2 (ENSMNEG00000035909) #23	IDS (ENSMNEG00000030343) #24	ENSMNEG00000034749	ENSMNEG00000034300	ENSMNEG00000031361	TMEM185A (ENSMNEG00000040474)
Crab-eating macaque	MODERN SPECIES	175	ENSMFAG00000060567	ENSMFAG00000058294	SPANXN4 (ENSMFAG00000003443)	ENSMFAG00000058596	SPANXN3 (ENSMFAG00000035745)	SLITRK4 (ENSMFAG00000029666)	SPANXN2 (ENSMFAG00000043556)	ENSMFAG00000030134	ENSMFAG00000027138	ENSMFAG00000054570	ENSMFAG00000031635	ENSMFAG00000053441	ENSMFAG00000061545	SLITRK2 (ENSMFAG00000030304)	ENSMFAG00000032729	FMR1 (ENSMFAG00000000241) #22	FMR1NB (ENSMFAG00000036881)	ENSMFAG00000003429	AFF2 (ENSMFAG00000044807) #23	ENSMFAG00000053111	IDS (ENSMFAG00000037097) #24	ENSMFAG00000053185	ENSMFAG00000054856	ENSMFAG00000062619	ENSMFAG00000056673	TMEM185A (ENSMFAG00000040133)	ENSMFAG00000002138	MAGEA8 (ENSMFAG00000003115)	ENSMFAG00000001225	ENSMFAG00000047287	MAMLD1 (ENSMFAG00000000232)
Cercopithecinae_b	ANCESTRAL SPECIES	45	ENSGT00940000162359	ENSGT00390000013647	ENSGT00890000139472.a.b	ENSGT00940000162721	ENSGT00910000146818	ENSGT00940000164981	ENSGT00940000164535.a	ENSGT00940000165112	ENSGT00940000163956.c.b	ENSGT00940000160971	ENSGT00940000163956.d	ENSGT00940000164738.d	ENSGT00940000161248	ENSGT00950000182878.b.a.c.a.a.b.i.a	ENSGT00850000133588	ENSGT00950000183189.a.b.b #22	ENSGT00390000007953	ENSGT00910000148734	ENSGT00390000018324.f	ENSGT00950000182974.a.a.a.a #23	ENSGT00970000197053	ENSGT00940000156803 #24	ENSGT00940000158388	ENSGT00940000163633	ENSGT00940000165994	ENSGT00940000165348	ENSGT00940000161825.c	ENSGT00390000012182.ab	ENSGT00540000073886	ENSGT00390000009760.d	ENSGT00730000111366
Olive baboon	MODERN SPECIES	792	ENSPANG00000034008	ENSPANG00000040826	ENSPANG00000016851	ENSPANG00000017786	MAGEC2 (ENSPANG00000051336)	SPANXN4 (ENSPANG00000013571)	ENSPANG00000046479	SLITRK4 (ENSPANG00000005820)	SPANXN3 (ENSPANG00000000098)	ENSPANG00000051175	ENSPANG00000017877	ENSPANG00000029618	SLITRK2 (ENSPANG00000011464)	ENSPANG00000045404	ENSPANG00000048224	ENSPANG00000018447 #22	ENSPANG00000016635	ENSPANG00000032630	AFF2 (ENSPANG00000002926) #23	ENSPANG00000037367	ENSPANG00000042095 #24	TMEM185A (ENSPANG00000013627)	ENSPANG00000004032	ENSPANG00000049817	MAGEA8 (ENSPANG00000026481)	ENSPANG00000044008	ENSPANG00000041171	ENSPANG00000014395	ENSPANG00000032660	MAMLD1 (ENSPANG00000008461)	MTM1 (ENSPANG00000009162)
Cercopithecinae_d	ANCESTRAL SPECIES	177							ENSGT00940000165112	ENSGT00940000163956.c.b	ENSGT00940000160971	ENSGT00940000163956.d	ENSGT00940000164738.c	ENSGT00940000164738.d	ENSGT00940000161248	ENSGT00950000182878.b.a.c.a.a.b.i.a	ENSGT00850000133588	ENSGT00950000183189.a.b.b #22	ENSGT00390000007953	ENSGT00910000148734	ENSGT00390000018324.f	ENSGT00950000182974.a.a.a.a #23	ENSGT00940000156803 #24	ENSGT00390000009760.d	ENSGT00540000073886	ENSGT00390000012182.ab	ENSGT00940000161825.c	ENSGT00940000165348
Drill	MODERN SPECIES	1103											ENSMLEG00000039612	ENSMLEG00000032608	SLITRK2 (ENSMLEG00000004634)	ENSMLEG00000029792	ENSMLEG00000010101	FMR1 (ENSMLEG00000035664) #22	FMR1NB (ENSMLEG00000029212)	ENSMLEG00000004941
Rhinopithecus	ANCESTRAL SPECIES	932																ENSGT00950000183189.a.b.b #22	ENSGT00390000007953
Laurasiatheria	ANCESTRAL SPECIES	26	ENSGT00940000160788	ENSGT00940000162864	ENSGT00940000162313	ENSGT00940000159516	ENSGT00940000156974	ENSGT00940000158878	ENSGT00390000004226	ENSGT00390000002886.b.b	ENSGT00940000162359	ENSGT00940000164798	ENSGT00940000162721	ENSGT00940000160971	ENSGT00940000161248	ENSGT00940000165847	ENSGT00910000146020	ENSGT00950000183189.a.b.b #22	ENSGT00390000007953	ENSGT00950000182974.a.a.a.a #23	ENSGT00970000197053	ENSGT00940000156803 #24	ENSGT00940000158388	ENSGT00940000163633	ENSGT00940000161825	ENSGT00390000012182	ENSGT00730000111366	ENSGT00940000157029	ENSGT00940000153669.b	ENSGT00940000154344.a	ENSGT00940000153299.d	ENSGT00940000160515	ENSGT00390000017980
Laurasiatheria_c	ANCESTRAL SPECIES	10	ENSGT01070000253816.a.b	ENSGT00940000158723	ENSGT00940000153425.a.a.b.b	ENSGT00940000163390	ENSGT00940000162539	ENSGT00940000160788	ENSGT00940000162864.b	ENSGT00940000163347	ENSGT00940000159516	ENSGT00940000156974	ENSGT00940000158878	ENSGT00940000160971	ENSGT00940000162864.a	ENSGT00940000161248	ENSGT00940000165847	ENSGT00950000183189.a.b.b #22	ENSGT00390000007953	ENSGT00950000182974.a.a.a.a #23	ENSGT00970000197053	ENSGT00940000156803 #24	ENSGT00390000012182	ENSGT00940000161825	ENSGT00940000163823	ENSGT00940000163633	ENSGT00940000158388	ENSGT00730000111366	ENSGT00940000157029	ENSGT00940000153669.b	ENSGT00940000154344.a	ENSGT00940000153299.d	ENSGT00940000160515
Equus	ANCESTRAL SPECIES	39	ENSGT00940000156974	ENSGT00940000158878	ENSGT00390000004226	ENSGT00390000002886.b.b	ENSGT00940000162359	ENSGT01020000231229	ENSGT00940000164798	ENSGT00940000162721	ENSGT00910000146818	ENSGT00940000160971	ENSGT00940000162864.a	ENSGT00390000008294.e.a.b	ENSGT00940000161248	ENSGT00940000165847	ENSGT01090000261020.B	ENSGT00950000183189.a.b.b #22	ENSGT00390000007953	ENSGT00950000182974.a.a.a.a #23	ENSGT00970000197053	ENSGT00940000156803 #24
Donkey	MODERN SPECIES	36	ENSEASG00005031103	ENSEASG00005030704	ENSEASG00005016078	ENSEASG00005016076	GPR50 (ENSEASG00005016074)	HMGB3 (ENSEASG00005016072)	CD99L2 (ENSEASG00005016192)	ENSEASG00005031885	ENSEASG00005016190	MTM1 (ENSEASG00005016189)	ENSEASG00005037607	ENSEASG00005037549	ENSEASG00005026082	ENSEASG00005027415	ENSEASG00005018393	ENSEASG00005014017 #22	ENSEASG00005030672	ENSEASG00005036996	ENSEASG00005035623	ENSEASG00005031491	ENSEASG00005034087	ENSEASG00005032017	ENSEASG00005028959	ENSEASG00005030235	ENSEASG00005030711	ENSEASG00005030910	IDS (ENSEASG00005019569) #24	ENSEASG00005019572	ENSEASG00005034078	ENSEASG00005013954 #23	ENSEASG00005034581
Horse	MODERN SPECIES	480	MCF2 (ENSECAG00000007277)	ATP11C (ENSECAG00000005393)	ENSECAG00000034142	ENSECAG00000035913	ENSECAG00000057181	ENSECAG00000036414	LDOC1 (ENSECAG00000006527)	ENSECAG00000055823	SLITRK4 (ENSECAG00000006567)	ENSECAG00000006623	ENSECAG00000006641	SLITRK2 (ENSECAG00000020489)	ENSECAG00000034979	ENSECAG00000051078	ENSECAG00000045143	FMR1 (ENSECAG00000032767) #22	ENSECAG00000031632	AFF2 (ENSECAG00000021132) #23	ENSECAG00000035680	IDS (ENSECAG00000033355) #24	ENSECAG00000042341	ENSECAG00000031526	ENSECAG00000000873	ENSECAG00000037420	ENSECAG00000031123	ENSECAG00000050746	ENSECAG00000013903	TMEM185A (ENSECAG00000009399)	ENSECAG00000047614	ENSECAG00000028384	ENSECAG00000041692
Chiroptera	ANCESTRAL SPECIES	48											ENSGT00940000160971	ENSGT00940000162313	ENSGT00940000162864.b	ENSGT00940000161248	ENSGT00940000165847	ENSGT00950000183189.a.b.b #22	ENSGT00390000007953	ENSGT00950000182974.a.a.a.a #23	ENSGT00970000197053	ENSGT00940000156803 #24	ENSGT00390000012182	ENSGT00940000161825	ENSGT00940000158388	ENSGT00940000163633	ENSGT00730000111366	ENSGT00940000157029	ENSGT00940000153669.b	ENSGT00940000154344.a	ENSGT00940000153299.d	ENSGT00940000160515	ENSGT00390000017980
Microchiroptera	ANCESTRAL SPECIES	45											ENSGT00940000160971	ENSGT00940000162313	ENSGT00940000162864.b	ENSGT00940000161248	ENSGT00940000165847	ENSGT00950000183189.a.b.b #22	ENSGT00390000007953	ENSGT00950000182974.a.a.a.a #23	ENSGT00970000197053	ENSGT00940000156803 #24	ENSGT00390000012182	ENSGT00940000161825	ENSGT00940000158388	ENSGT00730000111366	ENSGT00940000157029	ENSGT00940000153669.b	ENSGT00940000154344.a	ENSGT00940000153299.d	ENSGT00940000160515	ENSGT00390000017980	ENSGT00940000160946
Microbat	MODERN SPECIES	977											SLITRK4 (ENSMLUG00000001049)	ENSMLUG00000029760	SLITRK2 (ENSMLUG00000015168)	ENSMLUG00000027619	ENSMLUG00000027197	FMR1 (ENSMLUG00000000587) #22	AFF2 (ENSMLUG00000010364) #23	ENSMLUG00000022730	IDS (ENSMLUG00000000061) #24	ENSMLUG00000003524	TMEM185A (ENSMLUG00000001319)	ENSMLUG00000026997	ENSMLUG00000016953	ENSMLUG00000026269	MAMLD1 (ENSMLUG00000005323)	ENSMLUG00000030480	MTM1 (ENSMLUG00000010836)	MTMR1 (ENSMLUG00000010872)	CD99L2 (ENSMLUG00000010903)	ENSMLUG00000010926	GPR50 (ENSMLUG00000012999)
Carnivora	ANCESTRAL SPECIES	11	ENSGT00940000163347	ENSGT00940000162313	ENSGT00940000159516	ENSGT00940000156974	ENSGT00940000158878	ENSGT00390000004226	ENSGT00390000002886.b.b	ENSGT00940000162359	ENSGT00940000164798	ENSGT00940000162721	ENSGT00940000160971	ENSGT00940000161248	ENSGT00940000165847	ENSGT01090000261020.B	ENSGT00910000146020	ENSGT00950000183189.a.b.b #22	ENSGT00390000007953	ENSGT00950000182974.a.a.a.a #23	ENSGT00970000197053	ENSGT00940000156803 #24	ENSGT00940000158388	ENSGT00940000163633	ENSGT00940000161825	ENSGT00390000012182	ENSGT00730000111366	ENSGT00940000157029	ENSGT00940000153669.b	ENSGT00940000154344.a	ENSGT00940000153299.d	ENSGT00940000160515	ENSGT00390000017980
Felidae	ANCESTRAL SPECIES	12	ENSGT00940000159516	ENSGT00940000156974	ENSGT00390000002517.a.b.b.d	ENSGT00940000158878	ENSGT00390000004226	ENSGT00390000002886.b.b	ENSGT00940000162359	ENSGT00730000111080.b.i.a	ENSGT00940000164798	ENSGT00940000162721	ENSGT00940000160971	ENSGT00940000165902.a.a	ENSGT00940000161248	ENSGT00940000165847	ENSGT00910000146020	ENSGT00950000183189.a.b.b #22	ENSGT00950000182974.a.a.a.a #23	ENSGT00970000197053	ENSGT00940000156803 #24	ENSGT00940000158388	ENSGT00940000161825	ENSGT00390000012182	ENSGT00730000111366	ENSGT00940000157029	ENSGT00940000153669.b	ENSGT00940000154344.a	ENSGT00940000153299.d	ENSGT00940000160515	ENSGT00390000017980	ENSGT00530000064765	ENSGT00940000160946
leopard	MODERN SPECIES	180															ENSPPRG00000018746	FMR1 (ENSPPRG00000018962) #22	AFF2 (ENSPPRG00000019488) #23	IDS (ENSPPRG00000019646) #24	ENSPPRG00000019770
Cat	MODERN SPECIES	252	ATP11C (ENSFCAG00000012377)	ENSFCAG00000047263	ENSFCAG00000028841	ENSFCAG00000053714	ENSFCAG00000052174	ENSFCAG00000044640	ENSFCAG00000046108	ENSFCAG00000023837	LDOC1 (ENSFCAG00000024705)	SLITRK4 (ENSFCAG00000040385)	ENSFCAG00000051885	ENSFCAG00000031974	ENSFCAG00000052728	ENSFCAG00000024773	ENSFCAG00000049061	FMR1 (ENSFCAG00000007228) #22	ENSFCAG00000038940	ENSFCAG00000051077	ENSFCAG00000037477	AFF2 (ENSFCAG00000004117) #23	ENSFCAG00000049417	IDS (ENSFCAG00000023644) #24	ENSFCAG00000051761	TMEM185A (ENSFCAG00000024483)	ENSFCAG00000041336	ENSFCAG00000005477	ENSFCAG00000004331	MTM1 (ENSFCAG00000004332)	MTMR1 (ENSFCAG00000031053)	CD99L2 (ENSFCAG00000012721)	ENSFCAG00000039909
Caniformia	ANCESTRAL SPECIES	22	ENSGT00940000162864.b	ENSGT00940000162313	ENSGT00940000159516	ENSGT00940000156974	ENSGT00940000158878	ENSGT00390000004226	ENSGT00390000002886.b.b	ENSGT00940000162359	ENSGT00940000164798	ENSGT00940000162721	ENSGT00940000160971	ENSGT00940000161248	ENSGT00940000165847	ENSGT01090000261020.B	ENSGT00910000146020	ENSGT00950000183189.a.b.b #22	ENSGT00390000007953	ENSGT00950000182974.a.a.a.a #23	ENSGT00970000197053	ENSGT00940000156803 #24	ENSGT00940000158388	ENSGT00940000163633	ENSGT00940000163823.f	ENSGT00940000161825	ENSGT00390000012182	ENSGT00730000111366	ENSGT00940000157029	ENSGT00940000153669.b	ENSGT00940000154344.a	ENSGT00940000153299.d	ENSGT00940000160515
Caniformia_b	ANCESTRAL SPECIES	27	ENSGT00940000162864.b	ENSGT00940000163347	ENSGT00940000162313	ENSGT00940000159516	ENSGT00940000156974	ENSGT00940000158878	ENSGT00390000004226	ENSGT00390000002886.b.b	ENSGT00940000162359	ENSGT00940000164798	ENSGT00940000162721	ENSGT00940000160971	ENSGT00940000161248	ENSGT00940000165847	ENSGT01090000261020.B	ENSGT00950000183189.a.b.b #22	ENSGT00390000007953	ENSGT00950000182974.a.a.a.a #23	ENSGT00970000197053	ENSGT00940000156803 #24	ENSGT00940000158388	ENSGT00940000163633	ENSGT00940000163823.f	ENSGT00940000161825	ENSGT00390000012182	ENSGT00730000111366	ENSGT00940000157029	ENSGT00940000153669.b	ENSGT00940000154344.a	ENSGT00940000153299.d	ENSGT00940000160515
Ursus	ANCESTRAL SPECIES	337															ENSGT00940000161248	ENSGT00950000183189.a.b.b #22	ENSGT00390000007953
Giant Panda	MODERN SPECIES	2288	ENSAMEG00000019776	ENSAMEG00000029471	ENSAMEG00000016189	ENSAMEG00000016219	ATP11C (ENSAMEG00000016285)	ENSAMEG00000016314	ENSAMEG00000019782	SOX3 (ENSAMEG00000026516)	ENSAMEG00000026901	ENSAMEG00000020003	ENSAMEG00000019515	SLITRK2 (ENSAMEG00000019302)	ENSAMEG00000026817	ENSAMEG00000019220	ENSAMEG00000024160	FMR1 (ENSAMEG00000014996) #22	ENSAMEG00000026576	AFF2 (ENSAMEG00000014934) #23	ENSAMEG00000030462	ENSAMEG00000014912 #24	ENSAMEG00000009351	ENSAMEG00000024519	ENSAMEG00000018292	MTM1 (ENSAMEG00000017035)	MTMR1 (ENSAMEG00000017003)	CD99L2 (ENSAMEG00000016998)	HMGB3 (ENSAMEG00000016990)	GPR50 (ENSAMEG00000016987)	ENSAMEG00000028231	PRRG3 (ENSAMEG00000024898)	FATE1 (ENSAMEG00000016977)
Ferret	MODERN SPECIES	425															ENSMPUG00000011495	FMR1 (ENSMPUG00000011485) #22	ENSMPUG00000011480	AFF2 (ENSMPUG00000011473) #23	IDS (ENSMPUG00000011467) #24	ENSMPUG00000019307	ENSMPUG00000011462
Canidae	ANCESTRAL SPECIES	50	ENSGT00940000156974	ENSGT00940000158878	ENSGT00390000004226	ENSGT00390000002886.b.b	ENSGT00940000162359	ENSGT00940000164798.d	ENSGT00940000162721	ENSGT00940000164798.c	ENSGT00940000160971	ENSGT00390000004380.e.a	ENSGT00940000165902	ENSGT00940000161248	ENSGT00940000165847	ENSGT01090000261020.B	ENSGT00910000146020	ENSGT00950000183189.a.b.b #22	ENSGT00390000007953	ENSGT00950000182974.a.a.a.a #23	ENSGT00970000197053	ENSGT00940000156803 #24	ENSGT00390000012182	ENSGT00940000161825	ENSGT00940000163823.e.b.a.a.b.a.b.a	ENSGT00940000158388	ENSGT00730000111366	ENSGT00940000157029	ENSGT00940000153669.b	ENSGT00940000154344.a	ENSGT00940000153299.d	ENSGT00940000160515	ENSGT00390000017980
Red fox	MODERN SPECIES	75	CUNHXorf66 (ENSVVUG00000021515)	ENSVVUG00000000104	LDOC1 (ENSVVUG00000000153)	ENSVVUG00000000181	ENSVVUG00000000288	SLITRK4 (ENSVVUG00000000328)	ENSVVUG00000000346	ENSVVUG00000000396	ENSVVUG00000000415	ENSVVUG00000000464	SLITRK2 (ENSVVUG00000000503)	ENSVVUG00000000672	ENSVVUG00000000690	ENSVVUG00000000712	ENSVVUG00000000716	FMR1 (ENSVVUG00000000753) #22	ENSVVUG00000000782	AFF2 (ENSVVUG00000000805) #23	IDS (ENSVVUG00000000855) #24
Canis_lupus	ANCESTRAL SPECIES	22	ENSGT00940000156974	ENSGT00940000158878	ENSGT00390000004226	ENSGT00390000002886.b.b	ENSGT00940000162359	ENSGT00940000164798.d	ENSGT00940000162721	ENSGT00940000164798.c	ENSGT00940000160971	ENSGT00390000004380.e.a.b	ENSGT00940000161248	ENSGT00940000165847	ENSGT01090000261020.B	ENSGT00890000139436.A.b.d	ENSGT00910000146020	ENSGT00950000183189.a.b.b #22	ENSGT00390000007953	ENSGT00950000182974.a.a.a.a #23	ENSGT00970000197053	ENSGT00940000156803 #24	ENSGT00390000012182	ENSGT00940000161825	ENSGT00940000163823.e.b.a.a.b.a.b.a	ENSGT00940000158388	ENSGT00730000111366	ENSGT00940000157029	ENSGT00940000153669.b	ENSGT00940000154344.a	ENSGT00940000153299.d	ENSGT00940000160515	ENSGT00390000017980
Dog	MODERN SPECIES	144	ATP11C (ENSCAFG00845030103)	ENSCAFG00845030392	SOX3 (ENSCAFG00845030422)	ENSCAFG00845030462	ENSCAFG00845019387	SLITRK4 (ENSCAFG00845019492)	ENSCAFG00845019585	ENSCAFG00845019607	ENSCAFG00845019668	SLITRK2 (ENSCAFG00845019739)	ENSCAFG00845020221	ENSCAFG00845020271	ENSCAFG00845020302	ENSCAFG00845020521	ENSCAFG00845020570	FMR1 (ENSCAFG00845020694) #22	ENSCAFG00845021006	AFF2 (ENSCAFG00845021181) #23	ENSCAFG00845021679	IDS (ENSCAFG00845021782) #24	CXHXorf40B (ENSCAFG00845022002)	ENSCAFG00845022075	ENSCAFG00845022106	ENSCAFG00845022166	ENSCAFG00845022257	ENSCAFG00845022285	ENSCAFG00845022298	ENSCAFG00845022345	ENSCAFG00845022395	ENSCAFG00845022615	ENSCAFG00845022636
Artiodactyla	ANCESTRAL SPECIES	9	ENSGT00940000159516	ENSGT00940000156974	ENSGT00940000158878	ENSGT00390000004226	ENSGT00390000002886.b.b	ENSGT00940000162359	ENSGT01020000231229	ENSGT00940000164798	ENSGT00940000162721	ENSGT00940000160971	ENSGT00940000162864.a	ENSGT00940000161248	ENSGT00940000165847	ENSGT01090000261020.B	ENSGT00910000146020	ENSGT00950000183189.a.b.b #22	ENSGT00390000007953	ENSGT00950000182974.a.a.a.a #23	ENSGT00940000156803 #24	ENSGT00940000163633	ENSGT00940000158388	ENSGT00910000144363	ENSGT00940000161825	ENSGT00390000012182	ENSGT00730000111366	ENSGT00940000157029	ENSGT00940000153669.b	ENSGT00940000154344.a	ENSGT00940000153299.d	ENSGT00940000160515	ENSGT00390000017980
Chacoan peccary	MODERN SPECIES	854														ENSCWAG00000012208	ENSCWAG00000012159	FMR1 (ENSCWAG00000011848) #22	AFF2 (ENSCWAG00000010778) #23	IDS (ENSCWAG00000010685) #24
Pig	MODERN SPECIES	300	SOX3 (ENSSSCG00000022501)	ENSSSCG00000061577	ENSSSCG00000047266	ENSSSCG00000054933	LDOC1 (ENSSSCG00000060354)	ENSSSCG00000047642	ENSSSCG00000012720	SLITRK4 (ENSSSCG00000022091)	ENSSSCG00000042052	ENSSSCG00000057502	ENSSSCG00000032608	SLITRK2 (ENSSSCG00000012724)	ENSSSCG00000051076	ENSSSCG00000057764	ENSSSCG00000035587	FMR1 (ENSSSCG00000012727) #22	AFF2 (ENSSSCG00000012730) #23	IDS (ENSSSCG00000012731) #24	ENSSSCG00000040446	ENSSSCG00000032730	ENSSSCG00000040153	TMEM185A (ENSSSCG00000012739)	ENSSSCG00000012740	ENSSSCG00000036958	ENSSSCG00000041318	ENSSSCG00000012733	ENSSSCG00000012732	ENSSSCG00000037995	MAMLD1 (ENSSSCG00000012741)	MTM1 (ENSSSCG00000012742)	MTMR1 (ENSSSCG00000012743)
Artiodactyla_a	ANCESTRAL SPECIES	9	ENSGT00940000159516	ENSGT00940000156974	ENSGT00940000158878	ENSGT00390000004226	ENSGT00390000002886.b.b	ENSGT00940000162359	ENSGT01020000231229	ENSGT00940000164798	ENSGT00940000162721	ENSGT00940000160971	ENSGT00940000162864.a	ENSGT00940000161248	ENSGT00940000165847	ENSGT01090000261020.B	ENSGT00910000146020	ENSGT00950000183189.a.b.b #22	ENSGT00390000007953	ENSGT00950000182974.a.a.a.a #23	ENSGT00940000156803 #24	ENSGT00940000163633	ENSGT00940000158388	ENSGT00910000144363	ENSGT00940000161825	ENSGT00390000012182	ENSGT00730000111366	ENSGT00940000157029	ENSGT00940000153669.b	ENSGT00940000154344.a	ENSGT00940000153299.d	ENSGT00940000160515	ENSGT00390000017980
Camelidae	ANCESTRAL SPECIES	51	ENSGT01070000253816.a.b	ENSGT00940000158723	ENSGT00940000153425.a.a.b.b	ENSGT00940000163390	ENSGT00940000162539	ENSGT00940000160788	ENSGT00940000163347	ENSGT00940000162313	ENSGT00940000159516	ENSGT00940000156974	ENSGT00940000158878	ENSGT00390000004226	ENSGT00940000160971	ENSGT00940000161248	ENSGT00940000165847	ENSGT00950000183189.a.b.b #22	ENSGT00950000182974.a.a.a.a #23	ENSGT00940000156803 #24
Arabian camel	MODERN SPECIES	204	RBMX (ENSCDRG00005011282)	ENSCDRG00005011435	GPR101 (ENSCDRG00005011581)	ZIC3 (ENSCDRG00005011602)	ENSCDRG00005011767	F9 (ENSCDRG00005012097)	MCF2 (ENSCDRG00005012278)	ATP11C (ENSCDRG00005013683)	ENSCDRG00005014959	ENSCDRG00005015221	LDOC1 (ENSCDRG00005015290)	ENSCDRG00005015300	SLITRK4 (ENSCDRG00005015308)	SLITRK2 (ENSCDRG00005015316)	ENSCDRG00005015357	FMR1 (ENSCDRG00005015464) #22	AFF2 (ENSCDRG00005015694) #23	IDS (ENSCDRG00005016081) #24	ENSCDRG00005016321	TMEM185A (ENSCDRG00005016368)	ENSCDRG00005016609	ENSCDRG00005016635	ENSCDRG00005016673	MTM1 (ENSCDRG00005016791)	MTMR1 (ENSCDRG00005016901)	CD99L2 (ENSCDRG00005017098)	HMGB3 (ENSCDRG00005017221)	GPR50 (ENSCDRG00005017269)	ENSCDRG00005017295	PRRG3 (ENSCDRG00005017332)	FATE1 (ENSCDRG00005017356)
Artiodactyla_b	ANCESTRAL SPECIES	19	ENSGT00940000156974	ENSGT00940000158878	ENSGT00390000004226	ENSGT00390000002886.b.b	ENSGT00940000162359	ENSGT01020000231229	ENSGT00940000164798	ENSGT00940000162721	ENSGT00940000160971	ENSGT00950000183087.A.b.a	ENSGT00940000162864.a	ENSGT00940000161248	ENSGT00940000165847	ENSGT01090000261020.B	ENSGT00910000146020	ENSGT00950000183189.a.b.b #22	ENSGT00390000007953	ENSGT00950000182974.a.a.a.a #23	ENSGT00940000156803 #24	ENSGT00940000163633	ENSGT00940000158388	ENSGT00910000144363	ENSGT00940000161825	ENSGT00390000012182	ENSGT00730000111366	ENSGT00940000157029	ENSGT00940000153669.b	ENSGT00940000154344.a	ENSGT00940000153299.d	ENSGT00940000160515	ENSGT00390000017980
Cetacea	ANCESTRAL SPECIES	19	ENSGT00940000158878	ENSGT00530000064050.j	ENSGT00390000004226	ENSGT00390000002886.b.b	ENSGT00940000162359	ENSGT01020000231229	ENSGT00940000164798	ENSGT00550000074618.a.b.`b	ENSGT00560000078638	ENSGT00940000162721	ENSGT00940000160971	ENSGT00950000183087.A.b.a	ENSGT00940000162864.a	ENSGT00940000161248	ENSGT00940000165847	ENSGT00950000183189.a.b.b #22	ENSGT00390000007953	ENSGT00950000182974.a.a.a.a #23	ENSGT00940000156803 #24	ENSGT00940000163633	ENSGT00940000158388	ENSGT00910000144363	ENSGT01030000234522.C.b.e.a.a.a.a.a.b	ENSGT00940000153582.b.a.a.b	ENSGT00940000161825	ENSGT00390000012182	ENSGT00730000111366	ENSGT00940000157029	ENSGT00940000153669.b	ENSGT00940000154344.a	ENSGT00940000153299.d.q.a
Odontoceti	ANCESTRAL SPECIES	19	ENSGT00940000162864.b	ENSGT00940000163347	ENSGT00940000159516	ENSGT00940000156974	ENSGT00940000158878	ENSGT00530000064050.j	ENSGT00390000004226	ENSGT00390000002886.b.b	ENSGT00940000162359	ENSGT01010000223978	ENSGT00940000160971	ENSGT00950000183087.A.b.a.e	ENSGT00940000162864.a	ENSGT00940000161248	ENSGT00940000165847	ENSGT00950000183189.a.b.b #22	ENSGT00390000007953	ENSGT00950000182974.a.a.a.a #23	ENSGT00940000156803 #24	ENSGT00940000163633	ENSGT00940000158388	ENSGT00940000153582.b.a.a.b	ENSGT01030000234522.C.b.e.a.a.a.a.a.b	ENSGT00910000144363	ENSGT00940000161825	ENSGT00390000012182	ENSGT00730000111366	ENSGT00940000157029	ENSGT00940000153669.b	ENSGT00940000154344.a	ENSGT00940000153299.d.q.a
Odontoceti_a	ANCESTRAL SPECIES	21	ENSGT00940000162539	ENSGT00940000160788	ENSGT00940000162864.b	ENSGT00940000163347	ENSGT00940000159516	ENSGT00940000156974	ENSGT00940000158878	ENSGT00530000064050.j	ENSGT00390000004226	ENSGT00390000002886.b.b	ENSGT00940000162359	ENSGT01010000223978	ENSGT00940000160971	ENSGT00950000183087.A.b.a.e	ENSGT00940000161248	ENSGT00950000183189.a.b.b #22	ENSGT00390000007953	ENSGT00950000182974.a.a.a.a #23	ENSGT00940000156803 #24	ENSGT00390000012182	ENSGT00910000144363	ENSGT01030000234522.C.b.e.a.a.a.a.a.b	ENSGT00940000153582.b.a.a.b	ENSGT00940000163633	ENSGT00940000158388	ENSGT00730000111366	ENSGT00940000157029	ENSGT00940000153669.b.i	ENSGT00940000154344.a	ENSGT00940000153299.d.q.a	ENSGT00940000160515
Dolphin	MODERN SPECIES	4276																FMR1 (ENSTTRG00000000613) #22	ENSTTRG00000000614
Odontoceti_b	ANCESTRAL SPECIES	17	ENSGT00940000160788	ENSGT00940000163347	ENSGT00940000159516	ENSGT00940000156974	ENSGT00940000158878	ENSGT00530000064050.j	ENSGT00390000004226	ENSGT00390000002886.b.b	ENSGT00940000162359	ENSGT01020000231229	ENSGT00940000164798	ENSGT00950000183375	ENSGT00940000160971	ENSGT00950000183087.A.b.a.e	ENSGT00940000161248	ENSGT00950000183189.a.b.b #22	ENSGT00390000007953	ENSGT00950000182974.a.a.a.a #23	ENSGT00940000156803 #24	ENSGT00390000012182	ENSGT00910000144363	ENSGT01030000234522.C.b.e.a.a.a.a.a.b	ENSGT00940000153582.b.a.a.b	ENSGT00940000163633	ENSGT00940000158388	ENSGT00730000111366	ENSGT00940000157029	ENSGT00940000153669.b.i	ENSGT00940000154344.a	ENSGT00940000153299.d.q.a	ENSGT00940000160515
Monodontidae	ANCESTRAL SPECIES	19	ENSGT00940000162864.b	ENSGT00940000162313	ENSGT00940000159516	ENSGT00940000156974	ENSGT00940000158878	ENSGT00530000064050.j	ENSGT00390000004226	ENSGT00390000002886.b.b	ENSGT00940000162359	ENSGT01020000231229	ENSGT00940000164798	ENSGT00950000183375	ENSGT00940000160971	ENSGT00950000183087.A.b.a.e	ENSGT00940000161248	ENSGT00950000183189.a.b.b #22	ENSGT00390000007953	ENSGT00950000182974.a.a.a.a #23	ENSGT00940000156803 #24	ENSGT00940000163633	ENSGT00940000158388	ENSGT00390000012182	ENSGT00730000111366	ENSGT00940000157029	ENSGT00940000153669.b.i	ENSGT00940000154344.a	ENSGT00390000006051.a.a.a.b.a.a.a	ENSGT00940000164950	ENSGT00940000153299.d.q.a	ENSGT00940000160515	ENSGT00390000017980.ob
Beluga whale	MODERN SPECIES		FGF13 (ENSDLEG00000001212)	ENSDLEG00000001192	F9 (ENSDLEG00000001177)	MCF2 (ENSDLEG00000001070)	ENSDLEG00000001046	ATP11C (ENSDLEG00000000892)	ENSDLEG00000000855	SOX3 (ENSDLEG00000000843)	ENSDLEG00000000822	ENSDLEG00000000818	ENSDLEG00000000805	LDOC1 (ENSDLEG00000000802)	SLITRK4 (ENSDLEG00000000783)	ENSDLEG00000000774	SLITRK2 (ENSDLEG00000000769)	FMR1 (ENSDLEG00000000712) #22	ENSDLEG00000000683	AFF2 (ENSDLEG00000000636) #23	IDS (ENSDLEG00000000599) #24	CUNHXorf40A (ENSDLEG00000000594)	TMEM185A (ENSDLEG00000000557)	MAMLD1 (ENSDLEG00000000500)	MTM1 (ENSDLEG00000000445)	MTMR1 (ENSDLEG00000000418)	CD99L2 (ENSDLEG00000000368)	ENSDLEG00000000355	ENSDLEG00000000344	ENSDLEG00000000317	GPR50 (ENSDLEG00000000267)	VMA21 (ENSDLEG00000000251)	PRRG3 (ENSDLEG00000000233)
Narwhal	MODERN SPECIES	309	ENSMMNG00015016406	F9 (ENSMMNG00015016457)	MCF2 (ENSMMNG00015016750)	ATP11C (ENSMMNG00015018100)	ENSMMNG00015018741	ENSMMNG00015018772	ENSMMNG00015018792	SOX3 (ENSMMNG00015018809)	ENSMMNG00015018831	ENSMMNG00015018855	LDOC1 (ENSMMNG00015018872)	ENSMMNG00015018884	SLITRK4 (ENSMMNG00015018897)	ENSMMNG00015018909	SLITRK2 (ENSMMNG00015018926)	FMR1 (ENSMMNG00015019001) #22	ENSMMNG00015019165	ENSMMNG00015019193	AFF2 (ENSMMNG00015019223) #23	IDS (ENSMMNG00015019300) #24	ENSMMNG00015019386	TMEM185A (ENSMMNG00015019419)	ENSMMNG00015019479	MAMLD1 (ENSMMNG00015019528)	MTM1 (ENSMMNG00015019552)	ENSMMNG00015019626	ENSMMNG00015019648	CD99L2 (ENSMMNG00015019669)	ENSMMNG00015019721	ENSMMNG00015019734	ENSMMNG00015019743
Vaquita	MODERN SPECIES	34	MCF2 (ENSPSNG00000013789)	ATP11C (ENSPSNG00000016149)	ENSPSNG00000016284	ENSPSNG00000016459	SOX3 (ENSPSNG00000016488)	ENSPSNG00000016506	ENSPSNG00000016567	ENSPSNG00000016628	ENSPSNG00000016676	LDOC1 (ENSPSNG00000016732)	SLITRK4 (ENSPSNG00000016771)	ENSPSNG00000016788	ENSPSNG00000016802	ENSPSNG00000016809	SLITRK2 (ENSPSNG00000016832)	FMR1 (ENSPSNG00000016888) #22	ENSPSNG00000017140	AFF2 (ENSPSNG00000017260) #23	IDS (ENSPSNG00000017979) #24	ENSPSNG00000018067	ENSPSNG00000018172	ENSPSNG00000018220	ENSPSNG00000018257	ENSPSNG00000018315	ENSPSNG00000018346	ENSPSNG00000018397	ENSPSNG00000018426	ENSPSNG00000018487	ENSPSNG00000018540	ENSPSNG00000018595	ENSPSNG00000018638
Sperm whale	MODERN SPECIES	13	ATP11C (ENSPCTG00005015323)	ENSPCTG00005015600	ENSPCTG00005015642	ENSPCTG00005015719	SOX3 (ENSPCTG00005015742)	ENSPCTG00005015765	ENSPCTG00005015851	ENSPCTG00005015868	ENSPCTG00005015949	LDOC1 (ENSPCTG00005016029)	SLITRK4 (ENSPCTG00005016051)	ENSPCTG00005016060	ENSPCTG00005016093	SLITRK2 (ENSPCTG00005016146)	ENSPCTG00005016250	FMR1 (ENSPCTG00005016358) #22	ENSPCTG00005016784	AFF2 (ENSPCTG00005016855) #23	ENSPCTG00005017037	TMEM185A (ENSPCTG00005017095)	ENSPCTG00005017259	ENSPCTG00005017287 #24	MAMLD1 (ENSPCTG00005017336)	MTM1 (ENSPCTG00005017453)	MTMR1 (ENSPCTG00005017567)	CD99L2 (ENSPCTG00005017740)	ENSPCTG00005018302	ENSPCTG00005018331	HMGB3 (ENSPCTG00005018370)	ENSPCTG00005018393	GPR50 (ENSPCTG00005018437)
Blue whale	MODERN SPECIES	40	SLITRK4 (ENSBMSG00010020675)	ENSBMSG00010020683	ENSBMSG00010020693	ENSBMSG00010020705	ENSBMSG00010020713	ENSBMSG00010020716	TCEAL1 (ENSBMSG00010020720)	ENSBMSG00010020726	MORF4L2 (ENSBMSG00010020731)	ENSBMSG00010020745	TMEM31 (ENSBMSG00010020764)	PLP1 (ENSBMSG00010020777)	RAB9B (ENSBMSG00010020794)	ENSBMSG00010020811	SLITRK2 (ENSBMSG00010020817)	FMR1 (ENSBMSG00010020867) #22	ENSBMSG00010020927	AFF2 (ENSBMSG00010020952) #23	ENSBMSG00010021002	ENSBMSG00010021009	IDS (ENSBMSG00010021024) #24	ENSBMSG00010021038	ENSBMSG00010021048	ENSBMSG00010021070	ENSBMSG00010021076	ENSBMSG00010021082	ENSBMSG00010021087	ENSBMSG00010021092	ENSBMSG00010021094	MAMLD1 (ENSBMSG00010021125)	MTM1 (ENSBMSG00010021136)
Pecora	ANCESTRAL SPECIES	28	ENSGT00940000159516	ENSGT00940000156974	ENSGT00940000158878	ENSGT00390000004226.b.b	ENSGT00390000004226.a	ENSGT00390000002886.b.b	ENSGT00940000162359	ENSGT00940000162721	ENSGT00390000004226.b.a	ENSGT00940000160971	ENSGT00940000162864.a.d.a	ENSGT00940000161248	ENSGT00940000165847	ENSGT01090000261020.B	ENSGT00910000146020	ENSGT00950000183189.a.b.b #22	ENSGT00390000007953	ENSGT00950000182974.a.a.a.a #23	ENSGT00390000012692.j	ENSGT00940000156803 #24	ENSGT00390000012182.j	ENSGT00940000161825.u	ENSGT00910000144363.g.a.a.a	ENSGT00940000161825.v.a.b	ENSGT00390000012182.i.a	ENSGT00940000161825.v.a.a.b	ENSGT00940000161825.v.a.a.a	ENSGT00910000144363.g.b	ENSGT00940000158388	ENSGT00910000144363.g.a.a.b.b	ENSGT00730000111366
Yarkand deer	MODERN SPECIES	1323	ENSCHYG00000018821	ENSCHYG00000018883	ENSCHYG00000018908	ENSCHYG00000019035	ENSCHYG00000019073	LDOC1 (ENSCHYG00000019098)	ENSCHYG00000019149	SLITRK4 (ENSCHYG00000019227)	ENSCHYG00000019271	ENSCHYG00000019320	ENSCHYG00000019396	ENSCHYG00000019441	ENSCHYG00000019503	SLITRK2 (ENSCHYG00000019590)	ENSCHYG00000019612	FMR1 (ENSCHYG00000019695) #22	ENSCHYG00000020265	AFF2 (ENSCHYG00000020328) #23	ENSCHYG00000020683	IDS (ENSCHYG00000020778) #24	TMEM185A (ENSCHYG00000020977)	ENSCHYG00000021261	ENSCHYG00000021203	ENSCHYG00000021281	ENSCHYG00000021295	ENSCHYG00000021323	ENSCHYG00000021343	ENSCHYG00000021386	ENSCHYG00000021415	ENSCHYG00000021498	MTM1 (ENSCHYG00000021727)
Percora_a	ANCESTRAL SPECIES	30	ENSGT00940000159516	ENSGT00940000156974	ENSGT00940000158878	ENSGT00390000004226.b.b	ENSGT00390000004226.a	ENSGT00390000002886.b.b	ENSGT00940000162359	ENSGT00940000162721	ENSGT00390000004226.b.a	ENSGT00940000160971	ENSGT00940000162864.a.d.a	ENSGT00940000161248	ENSGT00940000165847	ENSGT01090000261020.B	ENSGT00910000146020	ENSGT00950000183189.a.b.b #22	ENSGT00390000007953	ENSGT00950000182974.a.a.a.a #23	ENSGT00390000012692.j	ENSGT00940000156803 #24	ENSGT00390000012182.j	ENSGT00940000161825.u	ENSGT00910000144363.g.a.b.a	ENSGT00940000158388	ENSGT00910000144363.g.a.a.b.b	ENSGT00910000144363.g.b	ENSGT00910000144363.g.a.a.b.a	ENSGT00730000111366	ENSGT00940000157029	ENSGT00940000153669.b	ENSGT00940000154344.a
Siberian musk deer	MODERN SPECIES	275														ENSMMSG00000011694	ENSMMSG00000011717	FMR1 (ENSMMSG00000011770) #22
Goat	MODERN SPECIES	45															ENSCHIG00000000442	FMR1 (ENSCHIG00000000198) #22	ENSCHIG00000000156	ENSCHIG00000000125
American bison	MODERN SPECIES	1830																ENSBBBG00000020950 #22
Bos	ANCESTRAL SPECIES	36	ENSGT00940000162864.b	ENSGT00940000162313	ENSGT00390000010165.i.b.a.b	ENSGT00940000159516	ENSGT00940000156974	ENSGT00940000158878	ENSGT00940000160971	ENSGT00950000183087.A.b.a	ENSGT00940000162864.a.c	ENSGT01030000234964.A.a.a.d	ENSGT01030000234964.A.a.b	ENSGT00940000161248	ENSGT00940000165847	ENSGT01090000261020.B	ENSGT00910000146020	ENSGT00950000183189.a.b.b #22	ENSGT00390000007953	ENSGT00950000182974.a.a.a.a #23	ENSGT00390000012692.j	ENSGT00940000156803 #24	ENSGT00390000012182.j	ENSGT00940000161825.u.a	ENSGT00910000144363.g.b.b.a.a	ENSGT00940000158388	ENSGT00910000144363.g.a.a.b.a.a	ENSGT00910000144363.g.a.a.b.a.b	ENSGT00730000111366	ENSGT00940000157029	ENSGT00940000153669.b	ENSGT00940000154344.a	ENSGT00940000153299.d
Bos_b	ANCESTRAL SPECIES	31	ENSGT00940000160625.k.b	ENSGT00390000004226.a.b.a	ENSGT00390000004226.a.a.a.a	ENSGT00390000004226.a.a.b	ENSGT00390000002886.b.b	ENSGT00940000162359	ENSGT00940000162721	ENSGT00910000144363.g.b.a.a.a	ENSGT00940000160971	ENSGT00950000183087.A.b.a	ENSGT00940000162864.a.c	ENSGT01030000234964.A.a.a.d.b	ENSGT00940000161248	ENSGT00940000165847	ENSGT01090000261020.B	ENSGT00950000183189.a.b.b #22	ENSGT00390000007953	ENSGT00950000182974.a.a.a.a #23	ENSGT00390000012692.j	ENSGT00940000156803 #24	ENSGT00390000012182.j	ENSGT00910000144363.g.b.b.a.a	ENSGT00940000158388	ENSGT00910000144363.g.a.a.b.a.a	ENSGT00910000144363.g.a.a.b.a.b	ENSGT00730000111366	ENSGT00940000157029	ENSGT00940000153669.b	ENSGT00940000154344.a	ENSGT00940000153299.d	ENSGT00940000160515
Hybrid Bos Indicus	MODERN SPECIES	315	SLITRK4 (ENSBIXG00005004638)	ENSBIXG00005027055	ENSBIXG00005005606	ENSBIXG00005027125	ENSBIXG00005027138	ENSBIXG00005027152	ENSBIXG00005027165	ENSBIXG00005027181	ENSBIXG00005027191	ENSBIXG00005004675	ENSBIXG00005004684	ENSBIXG00005027216	ENSBIXG00005027241	ENSBIXG00005027274	ENSBIXG00005027294	FMR1 (ENSBIXG00005027682) #22	ENSBIXG00005027751	AFF2 (ENSBIXG00005027876) #23	ENSBIXG00005007783	IDS (ENSBIXG00005006628) #24	ENSBIXG00005028078	ENSBIXG00005028088	TMEM185A (ENSBIXG00005028166)	ENSBIXG00005028191	ENSBIXG00005028277	ENSBIXG00005028286	ENSBIXG00005028346	ENSBIXG00005028391	MTM1 (ENSBIXG00005028453)	MTMR1 (ENSBIXG00005028830)	CD99L2 (ENSBIXG00005002259)
Wild yak	MODERN SPECIES	1843															ENSBMUG00000019691	FMR1 (ENSBMUG00000019543) #22	ENSBMUG00000019396	ENSBMUG00000019382	AFF2 (ENSBMUG00000019315) #23	ENSBMUG00000019209	IDS (ENSBMUG00000019195) #24	ENSBMUG00000019109	ENSBMUG00000019085
Hedgehog	MODERN SPECIES	603																FMR1 (ENSEEUG00000015366) #22
Atlantogenata	ANCESTRAL SPECIES	194															ENSGT00940000165847	ENSGT00950000183189.a.b.b #22	ENSGT00390000007953	ENSGT00950000182974.a.a.a.a #23	ENSGT00940000156803 #24
Afrotheria_a	ANCESTRAL SPECIES	226												ENSGT00940000160971	ENSGT00940000162864.e	ENSGT00940000161248	ENSGT00940000165847	ENSGT00950000183189.a.b.b #22	ENSGT00390000007953	ENSGT00950000182974.a.a.a.a #23	ENSGT00940000156803 #24
Elephant	MODERN SPECIES	569								ENSLAFG00000015302	ENSLAFG00000002746	ENSLAFG00000032374	ENSLAFG00000028965	SLITRK4 (ENSLAFG00000031256)	ENSLAFG00000014412	SLITRK2 (ENSLAFG00000028207)	ENSLAFG00000031155	FMR1 (ENSLAFG00000013592) #22	ENSLAFG00000011672	AFF2 (ENSLAFG00000018691) #23	IDS (ENSLAFG00000010240) #24
Hyrax	MODERN SPECIES	400																FMR1 (ENSPCAG00000011936) #22
Xenarthra	ANCESTRAL SPECIES																	ENSGT00950000183189.a.b.b #22
Sloth	MODERN SPECIES	443																ENSCHOG00000006340 #22
Armadillo	MODERN SPECIES	3862																FMR1 (ENSDNOG00000019486) #22
Platypus	MODERN SPECIES	17	ENSOANG00000029775	NDUFA1 (ENSOANG00000002591)	ENSOANG00000002592	UPF3B (ENSOANG00000002594)	RPL39 (ENSOANG00000046605)	SEPTIN6 (ENSOANG00000002596)	NKRF (ENSOANG00000002598)	ATP11C (ENSOANG00000002599)	SLC25A43 (ENSOANG00000012900)	SLC25A5 (ENSOANG00000012943)	STEEP1 (ENSOANG00000001808)	ENSOANG00000044627	UBE2A (ENSOANG00000039379)	SLITRK4 (ENSOANG00000001080)	SLITRK2 (ENSOANG00000003708)	FMR1 (ENSOANG00000001097) #22	ENSOANG00000030698	ENSOANG00000001095 #23	IDS (ENSOANG00000001093) #24	TMEM185A (ENSOANG00000001092)	ENSOANG00000001091	ENSOANG00000001090	ENSOANG00000011632	MTM1 (ENSOANG00000011634)	MTMR1 (ENSOANG00000011635)	CD99L2 (ENSOANG00000011636)	HMGB3 (ENSOANG00000000353)	ENSOANG00000011638	VMA21 (ENSOANG00000043077)	ENSOANG00000011640	RNF128 (ENSOANG00000011641)
Anura	ANCESTRAL SPECIES	19	ENSGT01100000263502.A.a.a.a.a	ENSGT01070000253816.a.b	ENSGT00940000158723	ENSGT00940000153425	ENSGT00940000165126	ENSGT00940000163390	ENSGT00940000162539	ENSGT00940000160788	ENSGT00940000163347	ENSGT00940000159516	ENSGT00940000156974	ENSGT00940000158878	ENSGT00940000162359	ENSGT00940000160971	ENSGT00940000161248	ENSGT00950000183189.a.b.b #22	ENSGT00950000182974.a.a.a.a #23	ENSGT00940000156803 #24	ENSGT00940000158388	ENSGT00390000012182	ENSGT00730000111366	ENSGT00940000157029	ENSGT00940000153669.b	ENSGT00940000154344.a	ENSGT00940000153299	ENSGT00940000160515	ENSGT00390000017980	ENSGT00940000164304	ENSGT00940000159451	ENSGT00940000158347	ENSGT00390000005094
Leishan spiny toad	MODERN SPECIES	12	ENSLLEG00000015040	ENSLLEG00000015021	ENSLLEG00000014734	F9 (ENSLLEG00000013091)	MCF2 (ENSLLEG00000012727)	ATP11C (ENSLLEG00000021660)	SOX3 (ENSLLEG00000021575)	ENSLLEG00000021547	ENSLLEG00000021529	SLITRK4 (ENSLLEG00000021481)	ENSLLEG00000021443	SLITRK2 (ENSLLEG00000021429)	ENSLLEG00000021402	ENSLLEG00000021375	ENSLLEG00000021356	FMR1 (ENSLLEG00000020763) #22	ENSLLEG00000020726	AFF2 (ENSLLEG00000020486) #23	ENSLLEG00000020458	IDS (ENSLLEG00000020174) #24	ENSLLEG00000020131	TMEM185A (ENSLLEG00000019944)	ENSLLEG00000019901	ENSLLEG00000019874	MAMLD1 (ENSLLEG00000019775)	MTM1 (ENSLLEG00000019183)	MTMR1 (ENSLLEG00000018118)	CD99L2 (ENSLLEG00000017773)	HMGB3 (ENSLLEG00000017633)	GPR50 (ENSLLEG00000017599)	ENSLLEG00000017575
Frog	MODERN SPECIES	8	ENSXETG00000049167	ENSXETG00000042401	pcdh19 (ENSXETG00000031488)	ENSXETG00000038100	ENSXETG00000043428	diaph2 (ENSXETG00000018132)	ENSXETG00000049227	bcorl1 (ENSXETG00000007610)	thrsp (ENSXETG00000044715)	tspan6 (ENSXETG00000007608)	sox3 (ENSXETG00000046055)	ENSXETG00000048839	slitrk4 (ENSXETG00000012352)	mynn (ENSXETG00000004288)	ENSXETG00000042834	soho1 (ENSXETG00000019647) #22	aff2 (ENSXETG00000019630) #23	ids (ENSXETG00000007745) #24	tmem185a (ENSXETG00000007744)	mamld1 (ENSXETG00000007743)	mtm1 (ENSXETG00000017786)	cd99l2 (ENSXETG00000011390)	mtmr1 (ENSXETG00000007741)	hmgb3 (ENSXETG00000007740)	mtnr1c (ENSXETG00000005878)	vma21 (ENSXETG00000025460)	pasd1 (ENSXETG00000043557)	tbc1d8b (ENSXETG00000002382)	rnf128 (ENSXETG00000037534)	radx (ENSXETG00000002379)	nrk (ENSXETG00000004324) #14
Coelacanth	MODERN SPECIES	331																FMR1 (ENSLACG00000005358) #22	ENSLACG00000008183 #23	ENSLACG00000010860 #23	IDS (ENSLACG00000011933) #24	ANKRD46 (ENSLACG00000012116)	TMEM185A (ENSLACG00000012191)	ENSLACG00000012431	ENSLACG00000012506	ENSLACG00000013569	MTM1 (ENSLACG00000014251)	MTMR1 (ENSLACG00000014535)	CD99L2 (ENSLACG00000014774)	HMGB3 (ENSLACG00000015121)	ENSLACG00000015614	ENSLACG00000016260	TBC1D8B (ENSLACG00000016469)