Mus	ANCESTRAL SPECIES	7	ENSGT00940000155893.b #7	ENSGT00950000183039.B.b.a #8	ENSGT00730000111202 #9	ENSGT00940000155531.b #10	ENSGT00950000183039.B.a #11	ENSGT00940000156335 #12	ENSGT00390000013727.d #13	ENSGT01000000214413.b.a.a #14	ENSGT00940000156305 #15	ENSGT00390000002837 #16	ENSGT00390000009980 #17	ENSGT00940000157401 #18	ENSGT00940000155931 #19	ENSGT00390000013701 #20	ENSGT00390000015010 #21	ENSGT00950000183189.a.b.a #22	ENSGT00940000154384.h.b.f #23	ENSGT00940000160614 #24	ENSGT00940000156162.C.k #25	ENSGT00940000154552.b #26	ENSGT00940000156941 #27	ENSGT00940000153661.a.a #28	ENSGT00940000157312 #29	ENSGT00950000183169.C #30	ENSGT00940000155988 #32	ENSGT00860000136163 #33	ENSGT01010000222815	ENSGT00950000183130.A #34	ENSGT00940000155372 #35	ENSGT00390000012346 #36	ENSGT01060000248588.a.c.b #37
Mus_A	ANCESTRAL SPECIES	9	ENSGT00940000155893.b #7	ENSGT00950000183039.B.b.a #8	ENSGT00730000111202 #9	ENSGT00940000155531.b #10	ENSGT00950000183039.B.a #11	ENSGT00940000156335 #12	ENSGT00390000013727.d #13	ENSGT01000000214413.b.a.a #14	ENSGT00940000156305 #15	ENSGT00390000002837.y #16	ENSGT00390000009980 #17	ENSGT00940000157401 #18	ENSGT00940000155931 #19	ENSGT00390000013701 #20	ENSGT00390000015010 #21	ENSGT00950000183189.a.b.a #22	ENSGT00940000154384.h.b.f #23	ENSGT00940000160614 #24	ENSGT00940000156162.C.k #25	ENSGT00940000154552.b #26	ENSGT00940000156941 #27	ENSGT00940000153661.b.b ##28	ENSGT00940000153661.a.a #28	ENSGT00940000157312 #29	ENSGT00950000183169.C #30	ENSGT00940000155988 #32	ENSGT00860000136163 #33	ENSGT01010000222815	ENSGT00950000183130.A #34	ENSGT00940000155372 #35	ENSGT00390000012346 #36
Mus_B	ANCESTRAL SPECIES	8	ENSGT00940000155893.b #7	ENSGT00950000183039.B.b.a #8	ENSGT00730000111202 #9	ENSGT00940000155531.b #10	ENSGT00950000183039.B.a #11	ENSGT00940000156335 #12	ENSGT00390000013727.d #13	ENSGT01000000214413.b.a.a #14	ENSGT00940000156305 #15	ENSGT00390000002837.y #16	ENSGT00390000009980 #17	ENSGT00940000157401 #18	ENSGT00940000155931 #19	ENSGT00390000013701 #20	ENSGT00390000015010 #21	ENSGT00950000183189.a.b.a #22	ENSGT00940000154384.h.b.f #23	ENSGT00940000160614 #24	ENSGT00940000156162.C.k #25	ENSGT00940000154552.b #26	ENSGT00940000156941 #27	ENSGT00940000153661.a.a #28	ENSGT00940000157312 #29	ENSGT00950000183169.C #30	ENSGT00940000155988 #32	ENSGT00860000136163 #33	ENSGT01010000222815	ENSGT00950000183130.A #34	ENSGT00940000155372 #35	ENSGT00390000012346 #36	ENSGT01060000248588.a.c.b #37
Mus_C	ANCESTRAL SPECIES	6	ENSGT00940000155893.b #7	ENSGT00950000183039.B.b.a #8	ENSGT00730000111202 #9	ENSGT00940000155531.b #10	ENSGT00950000183039.B.a #11	ENSGT00940000156335 #12	ENSGT00390000013727.d #13	ENSGT01000000214413.b.a.a #14	ENSGT00940000156305 #15	ENSGT00390000002837.y #16	ENSGT00390000009980 #17	ENSGT00940000157401 #18	ENSGT00940000155931 #19	ENSGT00390000013701 #20	ENSGT00390000015010 #21	ENSGT00950000183189.a.b.a #22	ENSGT00940000154384.h.b.f #23	ENSGT00940000160614 #24	ENSGT00940000156162.C.k #25	ENSGT00940000154552.b #26	ENSGT00940000156941 #27	ENSGT00940000153661.a.a #28	ENSGT00940000157312 #29	ENSGT00950000183169.C #30	ENSGT00940000155988 #32	ENSGT00860000136163 #33	ENSGT01010000222815	ENSGT00950000183130.A #34	ENSGT00940000155372 #35	ENSGT00390000012346 #36	ENSGT01060000248588.a.c.b #37
spretus	MODERN SPECIES	12	Slc7a14 (MGP_SPRETEiJ_G0025846) #7	Kcnmb2 (MGP_SPRETEiJ_G0025847) #8	Zmat3 (MGP_SPRETEiJ_G0025848) #9	Pik3ca (MGP_SPRETEiJ_G0025849) #10	Kcnmb3 (MGP_SPRETEiJ_G0025850) #11	Zfp639 (MGP_SPRETEiJ_G0025851) #12	Mfn1 (MGP_SPRETEiJ_G0025852) #13	Gnb4 (MGP_SPRETEiJ_G0025853) #14	Actl6a (MGP_SPRETEiJ_G0025854) #15	Mrpl47 (MGP_SPRETEiJ_G0025855) #16	Ndufb5 (MGP_SPRETEiJ_G0025856) #17	Usp13 (MGP_SPRETEiJ_G0025857) #18	Pex5l (MGP_SPRETEiJ_G0025858) #19	Ttc14 (MGP_SPRETEiJ_G0025859) #20	Ccdc39 (MGP_SPRETEiJ_G0025860) #21	Fxr1 (MGP_SPRETEiJ_G0025861) #22	Dnajc19 (MGP_SPRETEiJ_G0025862) #23	Sox2 (MGP_SPRETEiJ_G0025863) #24	Atp11b (MGP_SPRETEiJ_G0025864) #25	MGP_SPRETEiJ_G0025865 #26	Mccc1 (MGP_SPRETEiJ_G0025866) #27	MGP_SPRETEiJ_G0025867 #28	Acad9 (MGP_SPRETEiJ_G0025868) #29	Zfp267 (MGP_SPRETEiJ_G0025869) #30	Qrfpr (MGP_SPRETEiJ_G0025870) #31	Anxa5 (MGP_SPRETEiJ_G0025871) #32	MGP_SPRETEiJ_G0025872 #33	Exosc9 (MGP_SPRETEiJ_G0025873) #34	Ccna2 (MGP_SPRETEiJ_G0025874) #35	Bbs7 (MGP_SPRETEiJ_G0025875) #36	Trpc3 (MGP_SPRETEiJ_G0025876) #37
Steppe mouse	MODERN SPECIES	3029														Ttc14 (ENSMSIG00000010721) #20	Ccdc39 (ENSMSIG00000011242) #21	Fxr1 (ENSMSIG00000011312) #22	Dnajc19 (ENSMSIG00000012005) #23	ENSMSIG00000012275
Mouse	MODERN SPECIES	12	Slc7a14 (ENSMUSG00000069072) #7	Kcnmb2 (ENSMUSG00000037610) #8	Zmat3 (ENSMUSG00000027663) #9	Pik3ca (ENSMUSG00000027665) #10	Kcnmb3 (ENSMUSG00000091091) #11	Zfp639 (ENSMUSG00000027667) #12	Mfn1 (ENSMUSG00000027668) #13	Gnb4 (ENSMUSG00000027669) #14	Actl6a (ENSMUSG00000027671) #15	Mrpl47 (ENSMUSG00000037531) #16	Ndufb5 (ENSMUSG00000027673) #17	Usp13 (ENSMUSG00000056900) #18	Pex5l (ENSMUSG00000027674) #19	Ttc14 (ENSMUSG00000027677) #20	Ccdc39 (ENSMUSG00000027676) #21	Fxr1 (ENSMUSG00000027680) #22	Dnajc19 (ENSMUSG00000027679) #23	Sox2 (ENSMUSG00000074637) #24	Atp11b (ENSMUSG00000037400) #25	Dcun1d1 (ENSMUSG00000027708) #26	Mccc1 (ENSMUSG00000027709) #27	Ccdc144b (ENSMUSG00000047696) ##28	Acad9 (ENSMUSG00000027710) #29	Zfp267 (ENSMUSG00000033883) #30	Qrfpr (ENSMUSG00000058400) #31	Anxa5 (ENSMUSG00000027712) #32	1810062G17Rik (ENSMUSG00000027713) #33	Smim43 (ENSMUSG00000085007)	Exosc9 (ENSMUSG00000027714) #34	Ccna2 (ENSMUSG00000027715) #35	Bbs7 (ENSMUSG00000037325) #36
Ryukyu mouse	MODERN SPECIES	12	Slc7a14 (MGP_CAROLIEiJ_G0024912) #7	Kcnmb2 (MGP_CAROLIEiJ_G0024913) #8	Zmat3 (MGP_CAROLIEiJ_G0024914) #9	Pik3ca (MGP_CAROLIEiJ_G0024915) #10	Kcnmb3 (MGP_CAROLIEiJ_G0024916) #11	Zfp639 (MGP_CAROLIEiJ_G0024917) #12	MGP_CAROLIEiJ_G0024918 #13	Gnb4 (MGP_CAROLIEiJ_G0024919) #14	Actl6a (MGP_CAROLIEiJ_G0024920) #15	Mrpl47 (MGP_CAROLIEiJ_G0024921) #16	Ndufb5 (MGP_CAROLIEiJ_G0024922) #17	Usp13 (MGP_CAROLIEiJ_G0024923) #18	Pex5l (MGP_CAROLIEiJ_G0024924) #19	Ttc14 (MGP_CAROLIEiJ_G0024925) #20	Ccdc39 (MGP_CAROLIEiJ_G0024926) #21	Fxr1 (MGP_CAROLIEiJ_G0024927) #22	MGP_CAROLIEiJ_G0024928 #23	Sox2 (MGP_CAROLIEiJ_G0024929) #24	Atp11b (MGP_CAROLIEiJ_G0024930) #25	MGP_CAROLIEiJ_G0024931 #26	Mccc1 (MGP_CAROLIEiJ_G0024932) #27	MGP_CAROLIEiJ_G0024933 ##28	MGP_CAROLIEiJ_G0024934 #29	Zfp267 (MGP_CAROLIEiJ_G0024935) #30	Qrfpr (MGP_CAROLIEiJ_G0024936) #31	Anxa5 (MGP_CAROLIEiJ_G0024937) #32	MGP_CAROLIEiJ_G0024938 #33	Exosc9 (MGP_CAROLIEiJ_G0024939) #34	Ccna2 (MGP_CAROLIEiJ_G0024940) #35	Bbs7 (MGP_CAROLIEiJ_G0024941) #36	Trpc3 (MGP_CAROLIEiJ_G0024942) #37
Shrew mouse	MODERN SPECIES	17	Cldn11 (MGP_PahariEiJ_G0026356)	Slc7a14 (MGP_PahariEiJ_G0026357) #7	Kcnmb2 (MGP_PahariEiJ_G0026358) #8	Zmat3 (MGP_PahariEiJ_G0026359) #9	Pik3ca (MGP_PahariEiJ_G0026360) #10	Kcnmb3 (MGP_PahariEiJ_G0026361) #11	Zfp639 (MGP_PahariEiJ_G0026362) #12	Mfn1 (MGP_PahariEiJ_G0026363) #13	Gnb4 (MGP_PahariEiJ_G0026364) #14	Actl6a (MGP_PahariEiJ_G0026365) #15	Mrpl47 (MGP_PahariEiJ_G0026366) #16	Ndufb5 (MGP_PahariEiJ_G0026367) #17	Usp13 (MGP_PahariEiJ_G0026368) #18	Pex5l (MGP_PahariEiJ_G0026369) #19	MGP_PahariEiJ_G0026370 #20	Fxr1 (MGP_PahariEiJ_G0026371) #22	Dnajc19 (MGP_PahariEiJ_G0026372) #23	Sox2 (MGP_PahariEiJ_G0026373) #24	MGP_PahariEiJ_G0026374 #26	Zfp267 (MGP_PahariEiJ_G0026375) #30	Qrfpr (MGP_PahariEiJ_G0026376) #31	Anxa5 (MGP_PahariEiJ_G0026377) #32	MGP_PahariEiJ_G0026378 #33	Exosc9 (MGP_PahariEiJ_G0026379) #34	Ccna2 (MGP_PahariEiJ_G0026380) #35	Bbs7 (MGP_PahariEiJ_G0026381) #36	Trpc3 (MGP_PahariEiJ_G0026382) #37	Bltp1 (MGP_PahariEiJ_G0026383)	Adad1 (MGP_PahariEiJ_G0026384)	Il2 (MGP_PahariEiJ_G0026385)	Il21 (MGP_PahariEiJ_G0026386)