Gnathostomata	DUPLICATION
Gnathostomata	ANCESTRAL SPECIES	613														ENSGT00940000180153	ENSGT00390000015010 #20	ENSGT00950000183189.a.b.a #22	ENSGT00940000154384 #23	ENSGT00940000160614 #24	ENSGT00940000156941 #28
Euteleostomi	ANCESTRAL SPECIES	426														ENSGT00390000013701 #19	ENSGT00390000015010 #20	ENSGT00950000183189.a.b.a #22	ENSGT00940000154384 #23	ENSGT00940000160614 #24	ENSGT00940000156162.C #26	ENSGT00940000154552 #27	ENSGT00940000156941 #28	ENSGT00950000182899.C.a
Sarcopterygii	ANCESTRAL SPECIES	26	ENSGT01030000234598.a.b	ENSGT00940000153421.a.b	ENSGT00950000183039.B.b.a ##7	ENSGT00730000111202	ENSGT00940000155531.b	ENSGT00950000183039.B.a #7	ENSGT00390000013727.d #10	ENSGT01000000214413.b.a.a #11	ENSGT00940000156305 #12	ENSGT00390000002837 #13	ENSGT00390000009980 #14	ENSGT00940000157401 #15	ENSGT00940000155931 #17	ENSGT00390000013701 #19	ENSGT00390000015010 #20	ENSGT00950000183189.a.b.a #22	ENSGT00940000154384 #23	ENSGT00940000160614 #24	ENSGT00940000156162.C #26	ENSGT00940000154552 #27	ENSGT00940000156941 #28	ENSGT00950000182899.C.a	ENSGT00940000159676 #31	ENSGT00940000161734 #32	ENSGT00550000074917	ENSGT00940000153783.b.b.d	ENSGT00950000182930.B	ENSGT00950000182930.A.a	ENSGT00950000182930.A.b	ENSGT00950000182930.C	ENSGT00950000182930.D
Tetrapoda	ANCESTRAL SPECIES	12	ENSGT00940000153421.a.b	ENSGT00950000183039.B.b.a ##7	ENSGT00730000111202	ENSGT00940000155531.b	ENSGT00950000183039.B.a #7	ENSGT00940000156335 #9	ENSGT00390000013727.d #10	ENSGT01000000214413.b.a.a #11	ENSGT00940000156305 #12	ENSGT00390000002837 #13	ENSGT00390000009980 #14	ENSGT00940000157401 #15	ENSGT00940000155931 #17	ENSGT00390000013701 #19	ENSGT00390000015010 #20	ENSGT00950000183189.a.b.a #22	ENSGT00940000154384 #23	ENSGT00940000160614 #24	ENSGT00940000156162.C #26	ENSGT00940000154552 #27	ENSGT00940000156941 #28	ENSGT00950000182899.C.a	ENSGT00940000159676 #31	ENSGT00940000161734 #32	ENSGT00550000074917	ENSGT00940000153783.b.b.d	ENSGT00950000182930.B	ENSGT00950000182930.A.a	ENSGT00950000182930.A.b	ENSGT00950000182930.C	ENSGT00940000159865
Amniota	ANCESTRAL SPECIES	13	ENSGT00940000153421.a.b	ENSGT00950000183039.B.b.a ##7	ENSGT00730000111202	ENSGT00940000155531.b	ENSGT00950000183039.B.a #7	ENSGT00940000156335 #9	ENSGT00390000013727.d #10	ENSGT01000000214413.b.a.a #11	ENSGT00940000156305 #12	ENSGT00390000002837 #13	ENSGT00390000009980 #14	ENSGT00940000157401 #15	ENSGT00940000155931 #17	ENSGT00390000013701 #19	ENSGT00390000015010 #20	ENSGT00950000183189.a.b.a #22	ENSGT00940000154384 #23	ENSGT00940000160614 #24	ENSGT00940000156162.C #26	ENSGT00940000154552 #27	ENSGT00940000156941 #28	ENSGT00950000182899.C.a	ENSGT00940000161734 #32	ENSGT00940000159676 #31	ENSGT00550000074917	ENSGT00940000153783.b.b.d	ENSGT00950000182930.B	ENSGT00950000182930.A.a	ENSGT00950000182930.A.b	ENSGT00950000182930.C	ENSGT00940000159865
Mammalia	ANCESTRAL SPECIES	7	ENSGT00940000153421.a.b	ENSGT00950000183039.B.b.a ##7	ENSGT00730000111202	ENSGT00940000155531.b	ENSGT00950000183039.B.a #7	ENSGT00940000156335 #9	ENSGT00390000013727.d #10	ENSGT01000000214413.b.a.a #11	ENSGT00940000156305 #12	ENSGT00390000002837 #13	ENSGT00390000009980 #14	ENSGT00940000157401 #15	ENSGT00940000155931 #17	ENSGT00390000013701 #19	ENSGT00390000015010 #20	ENSGT00950000183189.a.b.a #22	ENSGT00940000154384 #23	ENSGT00940000160614 #24	ENSGT00940000156162.C.k #26	ENSGT00940000154552 #27	ENSGT00940000156941 #28	ENSGT00950000182899.C.a	ENSGT00940000161734 #32	ENSGT00940000159676 #31	ENSGT00550000074917	ENSGT00940000153783.b.b.d	ENSGT00950000182930.B	ENSGT00950000182930.A.a	ENSGT00950000182930.A.b	ENSGT00950000182930.C	ENSGT00940000159865
Theria	ANCESTRAL SPECIES	5	ENSGT00940000153421.a.b	ENSGT00950000183039.B.b.a ##7	ENSGT00730000111202	ENSGT00940000155531.b	ENSGT00950000183039.B.a #7	ENSGT00940000156335 #9	ENSGT00390000013727.d #10	ENSGT01000000214413.b.a.a #11	ENSGT00940000156305 #12	ENSGT00390000002837 #13	ENSGT00390000009980 #14	ENSGT00940000157401 #15	ENSGT00940000155931 #17	ENSGT00390000013701 #19	ENSGT00390000015010 #20	ENSGT00950000183189.a.b.a #22	ENSGT00940000154384.h.a ##23	ENSGT00940000160614 #24	ENSGT00940000156162.C.k #26	ENSGT00940000154552 #27	ENSGT00940000156941 #28	ENSGT00950000182899.C.a	ENSGT00940000161734 #32	ENSGT00940000159676 #31	ENSGT00550000074917	ENSGT00940000153783.b.b.c.a	ENSGT00950000182930.B	ENSGT00950000182930.A.a	ENSGT00950000182930.A.b	ENSGT00950000182930.C	ENSGT00940000159865
Eutheria	ANCESTRAL SPECIES	5	ENSGT00940000153421.a.b	ENSGT00950000183039.B.b.a ##7	ENSGT00730000111202	ENSGT00940000155531.b	ENSGT00950000183039.B.a #7	ENSGT00940000156335 #9	ENSGT00390000013727.d #10	ENSGT01000000214413.b.a.a #11	ENSGT00940000156305 #12	ENSGT00390000002837 #13	ENSGT00390000009980 #14	ENSGT00940000157401 #15	ENSGT00940000155931 #17	ENSGT00390000013701 #19	ENSGT00390000015010 #20	ENSGT00950000183189.a.b.a #22	ENSGT00940000154384.h.a ##23	ENSGT00940000160614 #24	ENSGT00940000156162.C.k #26	ENSGT00940000154552 #27	ENSGT00940000156941 #28	ENSGT00950000182899.C.a	ENSGT00940000161734 #32	ENSGT00940000159676 #31	ENSGT00990000203899	ENSGT00940000164826	ENSGT00940000154345.a #34	ENSGT00940000156789 #35	ENSGT00530000063947.B #36	ENSGT00390000013063 #37	ENSGT00940000155470.b
Boreoeutheria	ANCESTRAL SPECIES	2	ENSGT00950000183039.B.b.a ##7	ENSGT00730000111202	ENSGT00940000155531.b	ENSGT00950000183039.B.a #7	ENSGT00940000156335 #9	ENSGT00390000013727.d #10	ENSGT01000000214413.b.a.a #11	ENSGT00940000156305 #12	ENSGT00390000002837 #13	ENSGT00390000009980 #14	ENSGT00940000157401 #15	ENSGT00910000147128	ENSGT00940000155931 #17	ENSGT00390000013701 #19	ENSGT00390000015010 #20	ENSGT00950000183189.a.b.a #22	ENSGT00940000154384.h.a ##23	ENSGT00940000160614 #24	ENSGT00940000156162.C.k #26	ENSGT00940000154552 #27	ENSGT00940000156941 #28	ENSGT00950000182899.C.a	ENSGT00940000159676 #31	ENSGT00940000161734 #32	ENSGT00940000163715.a	ENSGT00990000203899	ENSGT00940000154345.b #33	ENSGT00940000154345.a #34	ENSGT00940000156789 #35	ENSGT00530000063947.B #36	ENSGT00390000013063 #37
Euarchontoglires	ANCESTRAL SPECIES	2	ENSGT00940000155531.b	ENSGT00910000147422	ENSGT00950000183039.B.a #7	ENSGT00940000156335 #9	ENSGT00390000013727.d #10	ENSGT01000000214413.b.a.a #11	ENSGT00940000156305 #12	ENSGT00390000002837 #13	ENSGT00960000190585	ENSGT00390000009980 #14	ENSGT00940000157401 #15	ENSGT00910000147128	ENSGT00940000155931 #17	ENSGT00390000013701 #19	ENSGT00390000015010 #20	ENSGT00950000183189.a.b.a #22	ENSGT00940000154384.h.a ##23	ENSGT00940000160614 #24	ENSGT00940000156162.C.k #26	ENSGT00940000154552.b #27	ENSGT00940000156941 #28	ENSGT00950000182899.C.a	ENSGT00940000161734 #32	ENSGT00940000159676 #31	ENSGT00990000203899	ENSGT00940000154345.b #33	ENSGT00940000154345.a #34	ENSGT00940000156789 #35	ENSGT00530000063947.B #36	ENSGT00390000013063 #37	ENSGT00940000163497
Euarchontoglires_A	ANCESTRAL SPECIES	2	ENSGT00940000155531.b	ENSGT00910000147422	ENSGT00950000183039.B.a #7	ENSGT00940000156335 #9	ENSGT00390000013727.d #10	ENSGT01000000214413.b.a.a #11	ENSGT00940000156305 #12	ENSGT00390000002837 #13	ENSGT00960000190585	ENSGT00390000009980 #14	ENSGT00940000157401 #15	ENSGT00910000147128	ENSGT00940000155931 #17	ENSGT00390000013701 #19	ENSGT00390000015010 #20	ENSGT00950000183189.a.b.a #22	ENSGT00940000154384.h.a ##23	ENSGT00940000154384.h.b.f ##23	ENSGT00940000160614 #24	ENSGT00940000156162.C.k #26	ENSGT00940000154552.b #27	ENSGT00940000156941 #28	ENSGT00950000182899.C.a	ENSGT00940000159676 #31	ENSGT00940000161734 #32	ENSGT00940000163715.a	ENSGT00990000203899	ENSGT00940000154345.b #33	ENSGT00940000154345.a #34	ENSGT00940000156789 #35	ENSGT00530000063947.B #36
Glires	ANCESTRAL SPECIES	2	ENSGT00940000155531.b	ENSGT00910000147422	ENSGT00950000183039.B.a #7	ENSGT00940000156335 #9	ENSGT00390000013727.d #10	ENSGT01000000214413.b.a.a #11	ENSGT00940000156305 #12	ENSGT00390000002837 #13	ENSGT00960000190585	ENSGT00390000009980 #14	ENSGT00940000157401 #15	ENSGT00910000147128	ENSGT00940000155931 #17	ENSGT00390000013701 #19	ENSGT00390000015010 #20	ENSGT00950000183189.a.b.a #22	ENSGT00940000154384.h.a ##23	ENSGT00940000154384.h.b.f ##23	ENSGT00940000160614 #24	ENSGT00940000156162.C.k #26	ENSGT00940000154552.b #27	ENSGT00940000156941 #28	ENSGT00950000182899.C.a	ENSGT00940000159676 #31	ENSGT00940000161734 #32	ENSGT00940000163715.a	ENSGT00990000203899	ENSGT00940000154345.b #33	ENSGT00940000154345.a #34	ENSGT00940000156789 #35	ENSGT00530000063947.B #36
Rodentia	ANCESTRAL SPECIES	2	ENSGT00730000111202	ENSGT00940000155531.b	ENSGT00910000147422	ENSGT00950000183039.B.a #7	ENSGT00940000156335 #9	ENSGT00390000013727.d #10	ENSGT01000000214413.b.a.a #11	ENSGT00940000156305 #12	ENSGT00390000002837 #13	ENSGT00960000190585	ENSGT00390000009980 #14	ENSGT00940000157401 #15	ENSGT00940000155931 #17	ENSGT00390000013701 #19	ENSGT00390000015010 #20	ENSGT00950000183189.a.b.a #22	ENSGT00940000154384.h.a ##23	ENSGT00940000154384.h.b.f ##23	ENSGT00940000160614 #24	ENSGT00940000156162.C.k #26	ENSGT00940000154552.b #27	ENSGT00940000156941 #28	ENSGT00950000182899.C.a	ENSGT00940000159676 #31	ENSGT00940000161734 #32	ENSGT00990000203899	ENSGT00940000154345.b #33	ENSGT00940000154345.a #34	ENSGT00940000156789 #35	ENSGT00530000063947.B #36	ENSGT00390000013063 #37
Rodentia_A	ANCESTRAL SPECIES	5	ENSGT00730000111202	ENSGT00940000155531.b	ENSGT00910000147422	ENSGT00950000183039.B.a #7	ENSGT00940000156335 #9	ENSGT00390000013727.d #10	ENSGT01000000214413.b.a.a #11	ENSGT00940000156305 #12	ENSGT00390000002837 #13	ENSGT00960000190585	ENSGT00390000009980 #14	ENSGT00940000157401 #15	ENSGT00940000155931 #17	ENSGT00390000013701 #19	ENSGT00390000015010 #20	ENSGT00950000183189.a.b.a #22	ENSGT00940000154384.h.b.f ##23	ENSGT00940000154384.h.a ##23	ENSGT00940000160614 #24	ENSGT00940000156162.C.k #26	ENSGT00940000154552.b #27	ENSGT00940000156941 #28	ENSGT00950000182899.C.a	ENSGT00940000161734 #32	ENSGT00940000159676 #31	ENSGT00990000203899	ENSGT00940000154345.b #33	ENSGT00940000154345.a #34	ENSGT00940000156789 #35	ENSGT00530000063947.B #36	ENSGT00390000013063 #37
Sciuridae	ANCESTRAL SPECIES	12	ENSGT00730000111202	ENSGT00940000155531.b	ENSGT00910000147422	ENSGT00950000183039.B.a #7	ENSGT00940000156335 #9	ENSGT00390000013727.d #10	ENSGT01000000214413.b.a.a #11	ENSGT00940000156305 #12	ENSGT00390000002837 #13	ENSGT00960000190585	ENSGT00390000009980.k #14	ENSGT00940000157401 #15	ENSGT00940000155931 #17	ENSGT00390000013701 #19	ENSGT00390000015010 #20	ENSGT00950000183189.a.b.a #22	ENSGT00940000154384.g ##23	ENSGT00940000154384.h.b.f ##23	ENSGT00940000160614 #24	ENSGT00940000156162.C.k #26	ENSGT00940000154552.b #27	ENSGT00940000156941 #28	ENSGT00950000182899.C.a	ENSGT00940000159676 #31	ENSGT00990000203899	ENSGT00940000161734 #32	ENSGT00940000154345.b #33	ENSGT00940000154345.a #34	ENSGT00940000156789 #35	ENSGT00530000063947.B #36	ENSGT00390000013063 #37
Eurasian red squirrel	MODERN SPECIES	1	KCNMB3 (ENSSVLG00005007870) #7	ENSSVLG00005007822 #8	ENSSVLG00005007788 #9	MFN1 (ENSSVLG00005007726) #10	GNB4 (ENSSVLG00005007689) #11	ENSSVLG00005007595 #12	MRPL47 (ENSSVLG00005007505) #13	ENSSVLG00005007458 #14	USP13 (ENSSVLG00005007303) #15	ENSSVLG00005007236 #16	PEX5L (ENSSVLG00005006552) #17	ENSSVLG00005006293 #18	TTC14 (ENSSVLG00005006262) #19	CCDC39 (ENSSVLG00005006018) #20	ENSSVLG00005005952 #21	FXR1 (ENSSVLG00005005627) #22	ENSSVLG00005005504 #23	SOX2 (ENSSVLG00005005486) #24	ENSSVLG00005005467 #25	ATP11B (ENSSVLG00005005419) #26	DCUN1D1 (ENSSVLG00005005371) #27	MCCC1 (ENSSVLG00005005194) #28	ENSSVLG00005005088 #29	ENSSVLG00005005061 #30	B3GNT5 (ENSSVLG00005005047) #31	MCF2L2 (ENSSVLG00005005015) #32	KLHL6 (ENSSVLG00005004948) #33	KLHL24 (ENSSVLG00005004913) #34	YEATS2 (ENSSVLG00005004883) #35	MAP6D1 (ENSSVLG00005004847) #36	PARL (ENSSVLG00005004781) #37
Marmotini	ANCESTRAL SPECIES	59	ENSGT00730000111202	ENSGT00940000155531.b	ENSGT00910000147422	ENSGT00950000183039.B.a #7	ENSGT00940000156335 #9	ENSGT00390000013727.d #10	ENSGT01000000214413.b.a.a #11	ENSGT00940000156305 #12	ENSGT00390000002837 #13	ENSGT00960000190585	ENSGT00390000009980.k #14	ENSGT00940000157401 #15	ENSGT00940000155931 #17	ENSGT00390000013701 #19	ENSGT00390000015010 #20	ENSGT00950000183189.a.b.a #22	ENSGT00940000154384.g ##23	ENSGT00940000154384.h.b.f ##23	ENSGT00940000160614 #24	ENSGT00940000156162.C.k #26	ENSGT00940000154552.b #27	ENSGT00940000156941 #28	ENSGT00950000182899.C.a	ENSGT00940000159676 #31	ENSGT00990000203899	ENSGT00940000161734 #32
Alpin marmot	MODERN SPECIES	37	KCNMB3 (ENSMMMG00000004362) #7	ENSMMMG00000004333 #9	MFN1 (ENSMMMG00000004267) #10	GNB4 (ENSMMMG00000004203) #11	ACTL6A (ENSMMMG00000004175) #12	MRPL47 (ENSMMMG00000004133) #13	ENSMMMG00000004120	NDUFB5 (ENSMMMG00000004098) #14	USP13 (ENSMMMG00000004025) #15	PEX5L (ENSMMMG00000003637) #17	ENSMMMG00000003599	ENSMMMG00000003524 #19	ENSMMMG00000003512 #19	CCDC39 (ENSMMMG00000003487) #20	ENSMMMG00000003471	FXR1 (ENSMMMG00000003158) #22	ENSMMMG00000003137 ##23	ENSMMMG00000003124	SOX2 (ENSMMMG00000003111) #24	ENSMMMG00000003075	ATP11B (ENSMMMG00000003020) #26	DCUN1D1 (ENSMMMG00000003003) #27	MCCC1 (ENSMMMG00000002969) #28	ENSMMMG00000002953	B3GNT5 (ENSMMMG00000002941) #31	MCF2L2 (ENSMMMG00000002829) #32	ENSMMMG00000002795	ENSMMMG00000002779
Marmotini_b	ANCESTRAL SPECIES	149	ENSGT00730000111202	ENSGT00940000155531.b	ENSGT00910000147422	ENSGT00950000183039.B.a #7	ENSGT00940000156335 #9	ENSGT00390000013727.d #10	ENSGT01000000214413.b.a.a #11	ENSGT00390000015224.c.b.b.a.a	ENSGT00940000156305 #12	ENSGT00390000002837 #13	ENSGT00390000009980.k #14	ENSGT00940000157401 #15	ENSGT00940000155931 #17	ENSGT00390000013701 #19	ENSGT00390000015010 #20	ENSGT00950000183189.a.b.a #22	ENSGT00940000154384.g ##23	ENSGT00940000154384.h.b.f ##23	ENSGT00940000160614 #24	ENSGT00940000156162.C.k #26	ENSGT00940000154552.b #27	ENSGT00940000156941 #28	ENSGT00950000182899.C.a	ENSGT00940000159676 #31	ENSGT00990000203899	ENSGT00940000161734 #32
Arctic ground squirrel	MODERN SPECIES	22	ENSUPAG00010022722	KCNMB3 (ENSUPAG00010022719) #7	ENSUPAG00010022718	ZNF639 (ENSUPAG00010022715) #9	MFN1 (ENSUPAG00010022711) #10	GNB4 (ENSUPAG00010022702) #11	ENSUPAG00010022699	ACTL6A (ENSUPAG00010022696) #12	MRPL47 (ENSUPAG00010022693) #13	NDUFB5 (ENSUPAG00010022690) #14	USP13 (ENSUPAG00010022684) #15	PEX5L (ENSUPAG00010022611) #17	TTC14 (ENSUPAG00010022594) #19	CCDC39 (ENSUPAG00010022590) #20	ENSUPAG00010022589	FXR1 (ENSUPAG00010022534) #22	ENSUPAG00010022530 ##23	ATP11B (ENSUPAG00010022507) #26	DCUN1D1 (ENSUPAG00010022504) #27	MCCC1 (ENSUPAG00010022499) #28	ENSUPAG00010022496	ENSUPAG00010022491	ENSUPAG00010022487	MCF2L2 (ENSUPAG00010022478) #32	ENSUPAG00010022475
Squirrel	MODERN SPECIES	166	ZMAT3 (ENSSTOG00000028436)	PIK3CA (ENSSTOG00000012906)	KCNMB3 (ENSSTOG00000013715) #7	ZNF639 (ENSSTOG00000001442) #9	MFN1 (ENSSTOG00000005167) #10	GNB4 (ENSSTOG00000005210) #11	ENSSTOG00000033903	ACTL6A (ENSSTOG00000010540) #12	MRPL47 (ENSSTOG00000032487) #13	NDUFB5 (ENSSTOG00000010557) #14	USP13 (ENSSTOG00000002367) #15	PEX5L (ENSSTOG00000002383) #17	TTC14 (ENSSTOG00000003827) #19	ENSSTOG00000003847 #20	ENSSTOG00000011392	FXR1 (ENSSTOG00000010612) #22	ENSSTOG00000011508 ##23	SOX2 (ENSSTOG00000011011) #24	ATP11B (ENSSTOG00000016462) #26	DCUN1D1 (ENSSTOG00000016465) #27	MCCC1 (ENSSTOG00000010361) #28	ENSSTOG00000010372	B3GNT5 (ENSSTOG00000010399) #31	ENSSTOG00000029916	MCF2L2 (ENSSTOG00000010382) #32
Hystricomorpha	ANCESTRAL SPECIES	6	ENSGT00940000153421.a.b	ENSGT00950000183039.B.b.a ##7	ENSGT00730000111202	ENSGT00940000155531.b	ENSGT00950000183039.B.a #7	ENSGT00940000156335 #9	ENSGT00390000013727.d #10	ENSGT01000000214413.b.a.a #11	ENSGT00940000156305 #12	ENSGT00390000002837 #13	ENSGT00390000009980 #14	ENSGT00940000157401 #15	ENSGT00940000155931 #17	ENSGT00390000013701 #19	ENSGT00390000015010 #20	ENSGT00950000183189.a.b.a #22	ENSGT00940000154384.h.a ##23	ENSGT00940000160614 #24	ENSGT00940000156162.C.k #26	ENSGT00940000154552.a.a.a ##27	ENSGT00940000156941 #28	ENSGT00390000008796	ENSGT00390000016972.b.j.a.a	ENSGT00730000111263	ENSGT00940000158330	ENSGT00390000012807	ENSGT00940000160658	ENSGT00730000111453	ENSGT00730000110943.C	ENSGT00940000160853	ENSGT01030000234598.a.a.a
Naked mole-rat female	MODERN SPECIES	27	ENSHGLG00000011894	KCNMB3 (ENSHGLG00000012132) #7	ZNF639 (ENSHGLG00000050776) #9	MFN1 (ENSHGLG00000012515) #10	ENSHGLG00000044219	GNB4 (ENSHGLG00000012880) #11	ACTL6A (ENSHGLG00000013350) #12	MRPL47 (ENSHGLG00000033799) #13	NDUFB5 (ENSHGLG00000014377) #14	USP13 (ENSHGLG00000014472) #15	PEX5L (ENSHGLG00000016946) #17	ENSHGLG00000016952	TTC14 (ENSHGLG00000016959) #19	CCDC39 (ENSHGLG00000016969) #20	ENSHGLG00000039606	FXR1 (ENSHGLG00000018814) #22	ENSHGLG00000014387 ##23	ENSHGLG00000050891	ENSHGLG00000032116	SOX2 (ENSHGLG00000046210) #24	ATP11B (ENSHGLG00000014553) #26	ENSHGLG00000014589 ##27	ENSHGLG00000041896	ENSHGLG00000014650 #28	ENSHGLG00000014676	RPL35A (ENSHGLG00000046416)	IQCG (ENSHGLG00000018834)	LRCH3 (ENSHGLG00000019171)	ENSHGLG00000035747	ENSHGLG00000019355	ENSHGLG00000017149
Hystricomorpha_a	ANCESTRAL SPECIES	4	ENSGT00940000153421.a.b	ENSGT00950000183039.B.b.a ##7	ENSGT00730000111202	ENSGT00940000155531.b	ENSGT00950000183039.B.a #7	ENSGT00940000156335 #9	ENSGT00390000013727.d #10	ENSGT01000000214413.b.a.a #11	ENSGT00940000156305 #12	ENSGT00390000002837 #13	ENSGT00390000009980 #14	ENSGT00940000157401 #15	ENSGT00940000155931 #17	ENSGT00390000013701 #19	ENSGT00390000015010 #20	ENSGT00950000183189.a.b.a #22	ENSGT00940000154384.h.b.f ##23	ENSGT00940000154384.h.a ##23	ENSGT00940000160614 #24	ENSGT00940000156162.C.k #26	ENSGT00940000154552.a.a.a ##27	ENSGT00940000156941 #28	ENSGT00390000008796	ENSGT00390000016972.b.j.a.a	ENSGT00730000111263	ENSGT00940000158330	ENSGT00390000012807	ENSGT00940000160658	ENSGT00940000160853	ENSGT01030000234598.a.a.a	ENSGT00940000161784
Guinea pig	MODERN SPECIES	47	TBL1XR1 (ENSCPOG00000005472)	KCNMB2 (ENSCPOG00000013955) ##7	ZMAT3 (ENSCPOG00000003865)	PIK3CA (ENSCPOG00000006574)	KCNMB3 (ENSCPOG00000025991) #7	ZNF639 (ENSCPOG00000039664) #9	MFN1 (ENSCPOG00000033188) #10	GNB4 (ENSCPOG00000034790) #11	ACTL6A (ENSCPOG00000025370) #12	ENSCPOG00000002312 #13	NDUFB5 (ENSCPOG00000036110) #14	USP13 (ENSCPOG00000002315) #15	PEX5L (ENSCPOG00000002319) #17	TTC14 (ENSCPOG00000015311) #19	CCDC39 (ENSCPOG00000015314) #20	FXR1 (ENSCPOG00000010418) #22	ENSCPOG00000021198 ##23	SPTLC1 (ENSCPOG00000015106)	ROR2 (ENSCPOG00000021707)	AUH (ENSCPOG00000001066)	SYK (ENSCPOG00000010410)
Hystricomorpha_b	ANCESTRAL SPECIES	9	ENSGT00940000153421.a.b	ENSGT00950000183039.B.b.a ##7	ENSGT00730000111202	ENSGT00940000155531.b	ENSGT00950000183039.B.a #7	ENSGT00940000156335 #9	ENSGT00390000013727.d #10	ENSGT01000000214413.b.a.a #11	ENSGT00940000156305 #12	ENSGT00390000002837 #13	ENSGT00390000009980 #14	ENSGT00940000157401 #15	ENSGT00940000155931 #17	ENSGT00390000013701 #19	ENSGT00390000015010 #20	ENSGT00950000183189.a.b.a #22	ENSGT00940000154384.h.a ##23	ENSGT00940000160614 #24	ENSGT00940000156162.C.k #26	ENSGT00940000170892	ENSGT00940000156941 #28	ENSGT00390000008796	ENSGT00390000016972.b.j.a.a	ENSGT00730000111263	ENSGT00940000158330	ENSGT00390000012807	ENSGT00940000160658	ENSGT00940000160853	ENSGT01030000234598.a.a.a	ENSGT00940000161784	ENSGT00940000160780
Long-tailed chinchilla	MODERN SPECIES	127	TBL1XR1 (ENSCLAG00000013893)	KCNMB2 (ENSCLAG00000014319) ##7	ZMAT3 (ENSCLAG00000013464)	PIK3CA (ENSCLAG00000015135)	KCNMB3 (ENSCLAG00000014741) #7	ZNF639 (ENSCLAG00000011168) #9	MFN1 (ENSCLAG00000015912) #10	GNB4 (ENSCLAG00000015522) #11	ACTL6A (ENSCLAG00000012251) #12	ENSCLAG00000015039 #13	ENSCLAG00000014903 #14	USP13 (ENSCLAG00000015308) #15	PEX5L (ENSCLAG00000014042) #17	TTC14 (ENSCLAG00000013302) #19	CCDC39 (ENSCLAG00000012683) #20	FXR1 (ENSCLAG00000014182) #22	DNAJC19 (ENSCLAG00000011246) ##23	SOX2 (ENSCLAG00000017978) #24	ATP11B (ENSCLAG00000012551) #26	ENSCLAG00000014207	MCCC1 (ENSCLAG00000014174) #28	LMLN (ENSCLAG00000011520)	ENSCLAG00000012348	IQCG (ENSCLAG00000013851)	LRCH3 (ENSCLAG00000015543)	ENSCLAG00000012210	RUBCN (ENSCLAG00000013495)	TNK2 (ENSCLAG00000012555)	TFRC (ENSCLAG00000014371)	ZDHHC19 (ENSCLAG00000010728)	SLC51A (ENSCLAG00000011171)
Degu	DUPLICATION
Degu	DUPLICATION
Degu	MODERN SPECIES	339				MFN1 (ENSODEG00000002887) #10	GNB4 (ENSODEG00000002845) #11	ENSODEG00000002804 #12	ENSODEG00000002762 #13	NDUFB5 (ENSODEG00000002740) #14	ENSODEG00000002050	ENSODEG00000018753	USP13 (ENSODEG00000001943) #15	PEX5L (ENSODEG00000001608) #17	ENSODEG00000001450 #19	CCDC39 (ENSODEG00000001427) #20	ENSODEG00000001368	ENSODEG00000001069 #22	ENSODEG00000000914 ##23
Degu	MODERN SPECIES	235						PCMTD2 (ENSODEG00000004359)	ENSODEG00000004395	MYT1 (ENSODEG00000004469)	OPRL1 (ENSODEG00000004636)	LKAAEAR1 (ENSODEG00000004644)	RGS19 (ENSODEG00000004661)	TCEA2 (ENSODEG00000004734)	SOX18 (ENSODEG00000004785)	C20orf204 (ENSODEG00000004800)	PRPF6 (ENSODEG00000004841)	ENSODEG00000006177 #22	SAMD10 (ENSODEG00000006200)	ZNF512B (ENSODEG00000006241)	UCKL1 (ENSODEG00000006332)	DNAJC5 (ENSODEG00000006383)	ENSODEG00000006430	ABHD16B (ENSODEG00000019323)	ZBTB46 (ENSODEG00000006493)	SLC2A4RG (ENSODEG00000006508)	LIME1 (ENSODEG00000006535)	ZGPAT (ENSODEG00000006562)	ENSODEG00000006608	ARFRP1 (ENSODEG00000006629)	RTEL1 (ENSODEG00000006769)	STMN3 (ENSODEG00000007140)	ENSODEG00000007154
Degu	MODERN SPECIES	200		ENSODEG00000001487	ENSODEG00000001474	ZDHHC13 (ENSODEG00000001434)	CSRP3 (ENSODEG00000001395)	E2F8 (ENSODEG00000001309)	ENSODEG00000001265	NAV2 (ENSODEG00000001086)	DBX1 (ENSODEG00000000930)	HTATIP2 (ENSODEG00000000910)	ENSODEG00000000894	PRMT3 (ENSODEG00000000824)	SLC6A5 (ENSODEG00000000719)	ENSODEG00000018648	NELL1 (ENSODEG00000000600)	ENSODEG00000000998 #22	ANO5 (ENSODEG00000000906)	SLC17A6 (ENSODEG00000000829)	FANCF (ENSODEG00000000786)	ENSODEG00000000779	ENSODEG00000000771	SVIP (ENSODEG00000000706)	CCDC179 (ENSODEG00000000686)	ENSODEG00000000674
Rodentia_B	ANCESTRAL SPECIES	2	ENSGT00940000153421.a.b	ENSGT00950000183039.B.b.a ##7	ENSGT00730000111202	ENSGT00940000155531.b	ENSGT00950000183039.B.a #7	ENSGT00940000156335 #9	ENSGT00390000013727.d #10	ENSGT01000000214413.b.a.a #11	ENSGT00940000156305 #12	ENSGT00390000002837 #13	ENSGT00390000009980 #14	ENSGT00940000157401 #15	ENSGT00940000155931 #17	ENSGT00390000013701 #19	ENSGT00390000015010 #20	ENSGT00950000183189.a.b.a #22	ENSGT00940000154384.h.a ##23	ENSGT00940000154384.h.b.f ##23	ENSGT00940000160614 #24	ENSGT00940000156162.C.k #26	ENSGT00940000154552.b #27	ENSGT00940000156941 #28	ENSGT00940000164015 #29	ENSGT00950000182899.C.a	ENSGT00940000159676 #31	ENSGT00990000203899	ENSGT00940000154345.b #33	ENSGT00940000154345.a #34	ENSGT00940000156789 #35	ENSGT00530000063947.B #36	ENSGT00390000013063 #37
Myomorpha	ANCESTRAL SPECIES	38	ENSGT00940000153421.a.b	ENSGT00950000183039.B.b.a ##7	ENSGT00730000111202	ENSGT00940000155531.b	ENSGT00950000183039.B.a #7	ENSGT00940000156335 #9	ENSGT00390000013727.d #10	ENSGT01000000214413.b.a.a #11	ENSGT00940000156305 #12	ENSGT00390000002837 #13	ENSGT00390000009980 #14	ENSGT00940000157401 #15	ENSGT00940000155931 #17	ENSGT00390000013701 #19	ENSGT00390000015010 #20	ENSGT00950000183189.a.b.a #22	ENSGT00940000154384.h.a ##23	ENSGT00940000154384.h.b.f ##23	ENSGT00940000160614 #24	ENSGT00940000156162.C.k #26	ENSGT00940000154552.b #27	ENSGT00940000156941 #28	ENSGT00940000153661.b.b
Muroidea	ANCESTRAL SPECIES	83		ENSGT00950000183039.B.b.a ##7	ENSGT00730000111202	ENSGT00940000155531.b	ENSGT00950000183039.B.a #7	ENSGT00940000156335 #9	ENSGT00390000013727.d #10	ENSGT01000000214413.b.a.a #11	ENSGT00940000156305 #12	ENSGT00390000002837 #13	ENSGT00390000009980 #14	ENSGT00940000157401 #15	ENSGT00940000155931 #17	ENSGT00390000013701 #19	ENSGT00390000015010 #20	ENSGT00950000183189.a.b.a #22	ENSGT00940000154384.h.b.f ##23	ENSGT00940000160614 #24	ENSGT00940000156162.C.k #26	ENSGT00940000154552.b #27	ENSGT00940000156941 #28	ENSGT00940000153661.b.b
Muroidea_A	ANCESTRAL SPECIES	5	ENSGT00940000164694	ENSGT00950000183039.B.b.a ##7	ENSGT00730000111202	ENSGT00940000155531.b	ENSGT00950000183039.B.a #7	ENSGT00940000156335 #9	ENSGT00390000013727.d #10	ENSGT01000000214413.b.a.a #11	ENSGT00940000156305 #12	ENSGT00390000002837 #13	ENSGT00390000009980 #14	ENSGT00940000157401 #15	ENSGT00940000155931 #17	ENSGT00390000013701 #19	ENSGT00390000015010 #20	ENSGT00950000183189.a.b.a #22	ENSGT00940000154384.h.b.f ##23	ENSGT00940000160614 #24	ENSGT00940000156162.C.k #26	ENSGT00940000154552.b #27	ENSGT00940000156941 #28	ENSGT00940000153661.b.b	ENSGT00940000153661.a.a	ENSGT00940000157312	ENSGT00950000183169.C	ENSGT00940000155988	ENSGT01010000222815	ENSGT00950000183130.A	ENSGT00940000155372	ENSGT00390000012346	ENSGT01060000248588.a.c.b
Murinae	ANCESTRAL SPECIES	5	ENSGT00940000164694	ENSGT00950000183039.B.b.a ##7	ENSGT00730000111202	ENSGT00940000155531.b	ENSGT00950000183039.B.a #7	ENSGT00940000156335 #9	ENSGT00390000013727.d #10	ENSGT01000000214413.b.a.a #11	ENSGT00940000156305 #12	ENSGT00390000002837 #13	ENSGT00390000009980 #14	ENSGT00940000157401 #15	ENSGT00940000155931 #17	ENSGT00390000013701 #19	ENSGT00390000015010 #20	ENSGT00950000183189.a.b.a #22	ENSGT00940000154384.h.b.f ##23	ENSGT00940000160614 #24	ENSGT00940000156162.C.k #26	ENSGT00940000154552.b #27	ENSGT00940000156941 #28	ENSGT00940000153661.a.a	ENSGT00940000157312	ENSGT00950000183169.C	ENSGT00940000155988	ENSGT01010000222815	ENSGT00950000183130.A	ENSGT00940000155372	ENSGT00390000012346	ENSGT01060000248588.a.c.b	ENSGT00640000091487
Mus	ANCESTRAL SPECIES	7	ENSGT00940000155893.b	ENSGT00950000183039.B.b.a ##7	ENSGT00730000111202	ENSGT00940000155531.b	ENSGT00950000183039.B.a #7	ENSGT00940000156335 #9	ENSGT00390000013727.d #10	ENSGT01000000214413.b.a.a #11	ENSGT00940000156305 #12	ENSGT00390000002837 #13	ENSGT00390000009980 #14	ENSGT00940000157401 #15	ENSGT00940000155931 #17	ENSGT00390000013701 #19	ENSGT00390000015010 #20	ENSGT00950000183189.a.b.a #22	ENSGT00940000154384.h.b.f ##23	ENSGT00940000160614 #24	ENSGT00940000156162.C.k #26	ENSGT00940000154552.b #27	ENSGT00940000156941 #28	ENSGT00940000153661.a.a	ENSGT00940000157312	ENSGT00950000183169.C	ENSGT00940000155988	ENSGT00860000136163	ENSGT01010000222815	ENSGT00950000183130.A	ENSGT00940000155372	ENSGT00390000012346	ENSGT01060000248588.a.c.b
Mus_A	ANCESTRAL SPECIES	9	ENSGT00940000155893.b	ENSGT00950000183039.B.b.a ##7	ENSGT00730000111202	ENSGT00940000155531.b	ENSGT00950000183039.B.a #7	ENSGT00940000156335 #9	ENSGT00390000013727.d #10	ENSGT01000000214413.b.a.a #11	ENSGT00940000156305 #12	ENSGT00390000002837.y #13	ENSGT00390000009980 #14	ENSGT00940000157401 #15	ENSGT00940000155931 #17	ENSGT00390000013701 #19	ENSGT00390000015010 #20	ENSGT00950000183189.a.b.a #22	ENSGT00940000154384.h.b.f ##23	ENSGT00940000160614 #24	ENSGT00940000156162.C.k #26	ENSGT00940000154552.b #27	ENSGT00940000156941 #28	ENSGT00940000153661.b.b	ENSGT00940000153661.a.a	ENSGT00940000157312	ENSGT00950000183169.C	ENSGT00940000155988	ENSGT00860000136163	ENSGT01010000222815	ENSGT00950000183130.A	ENSGT00940000155372	ENSGT00390000012346
Mus_B	ANCESTRAL SPECIES	8	ENSGT00940000155893.b	ENSGT00950000183039.B.b.a ##7	ENSGT00730000111202	ENSGT00940000155531.b	ENSGT00950000183039.B.a #7	ENSGT00940000156335 #9	ENSGT00390000013727.d #10	ENSGT01000000214413.b.a.a #11	ENSGT00940000156305 #12	ENSGT00390000002837.y #13	ENSGT00390000009980 #14	ENSGT00940000157401 #15	ENSGT00940000155931 #17	ENSGT00390000013701 #19	ENSGT00390000015010 #20	ENSGT00950000183189.a.b.a #22	ENSGT00940000154384.h.b.f ##23	ENSGT00940000160614 #24	ENSGT00940000156162.C.k #26	ENSGT00940000154552.b #27	ENSGT00940000156941 #28	ENSGT00940000153661.a.a	ENSGT00940000157312	ENSGT00950000183169.C	ENSGT00940000155988	ENSGT00860000136163	ENSGT01010000222815	ENSGT00950000183130.A	ENSGT00940000155372	ENSGT00390000012346	ENSGT01060000248588.a.c.b
Mus_C	ANCESTRAL SPECIES	6	ENSGT00940000155893.b	ENSGT00950000183039.B.b.a ##7	ENSGT00730000111202	ENSGT00940000155531.b	ENSGT00950000183039.B.a #7	ENSGT00940000156335 #9	ENSGT00390000013727.d #10	ENSGT01000000214413.b.a.a #11	ENSGT00940000156305 #12	ENSGT00390000002837.y #13	ENSGT00390000009980 #14	ENSGT00940000157401 #15	ENSGT00940000155931 #17	ENSGT00390000013701 #19	ENSGT00390000015010 #20	ENSGT00950000183189.a.b.a #22	ENSGT00940000154384.h.b.f ##23	ENSGT00940000160614 #24	ENSGT00940000156162.C.k #26	ENSGT00940000154552.b #27	ENSGT00940000156941 #28	ENSGT00940000153661.a.a	ENSGT00940000157312	ENSGT00950000183169.C	ENSGT00940000155988	ENSGT00860000136163	ENSGT01010000222815	ENSGT00950000183130.A	ENSGT00940000155372	ENSGT00390000012346	ENSGT01060000248588.a.c.b
Steppe mouse	MODERN SPECIES	3029														Ttc14 (ENSMSIG00000010721) #19	Ccdc39 (ENSMSIG00000011242) #20	Fxr1 (ENSMSIG00000011312) #22	Dnajc19 (ENSMSIG00000012005) ##23	ENSMSIG00000012275
spretus	MODERN SPECIES	12	Slc7a14 (MGP_SPRETEiJ_G0025846)	Kcnmb2 (MGP_SPRETEiJ_G0025847) ##7	Zmat3 (MGP_SPRETEiJ_G0025848)	Pik3ca (MGP_SPRETEiJ_G0025849)	Kcnmb3 (MGP_SPRETEiJ_G0025850) #7	Zfp639 (MGP_SPRETEiJ_G0025851) #9	Mfn1 (MGP_SPRETEiJ_G0025852) #10	Gnb4 (MGP_SPRETEiJ_G0025853) #11	Actl6a (MGP_SPRETEiJ_G0025854) #12	Mrpl47 (MGP_SPRETEiJ_G0025855) #13	Ndufb5 (MGP_SPRETEiJ_G0025856) #14	Usp13 (MGP_SPRETEiJ_G0025857) #15	Pex5l (MGP_SPRETEiJ_G0025858) #17	Ttc14 (MGP_SPRETEiJ_G0025859) #19	Ccdc39 (MGP_SPRETEiJ_G0025860) #20	Fxr1 (MGP_SPRETEiJ_G0025861) #22	Dnajc19 (MGP_SPRETEiJ_G0025862) ##23	Sox2 (MGP_SPRETEiJ_G0025863) #24	Atp11b (MGP_SPRETEiJ_G0025864) #26	MGP_SPRETEiJ_G0025865 #27	Mccc1 (MGP_SPRETEiJ_G0025866) #28	MGP_SPRETEiJ_G0025867	Acad9 (MGP_SPRETEiJ_G0025868)	Zfp267 (MGP_SPRETEiJ_G0025869)	Qrfpr (MGP_SPRETEiJ_G0025870)	Anxa5 (MGP_SPRETEiJ_G0025871)	MGP_SPRETEiJ_G0025872	Exosc9 (MGP_SPRETEiJ_G0025873)	Ccna2 (MGP_SPRETEiJ_G0025874)	Bbs7 (MGP_SPRETEiJ_G0025875)	Trpc3 (MGP_SPRETEiJ_G0025876)
Mouse	MODERN SPECIES	12	Slc7a14 (ENSMUSG00000069072)	Kcnmb2 (ENSMUSG00000037610) ##7	Zmat3 (ENSMUSG00000027663)	Pik3ca (ENSMUSG00000027665)	Kcnmb3 (ENSMUSG00000091091) #7	Zfp639 (ENSMUSG00000027667) #9	Mfn1 (ENSMUSG00000027668) #10	Gnb4 (ENSMUSG00000027669) #11	Actl6a (ENSMUSG00000027671) #12	Mrpl47 (ENSMUSG00000037531) #13	Ndufb5 (ENSMUSG00000027673) #14	Usp13 (ENSMUSG00000056900) #15	Pex5l (ENSMUSG00000027674) #17	Ttc14 (ENSMUSG00000027677) #19	Ccdc39 (ENSMUSG00000027676) #20	Fxr1 (ENSMUSG00000027680) #22	Dnajc19 (ENSMUSG00000027679) ##23	Sox2 (ENSMUSG00000074637) #24	Atp11b (ENSMUSG00000037400) #26	Dcun1d1 (ENSMUSG00000027708) #27	Mccc1 (ENSMUSG00000027709) #28	Ccdc144b (ENSMUSG00000047696)	Acad9 (ENSMUSG00000027710)	Zfp267 (ENSMUSG00000033883)	Qrfpr (ENSMUSG00000058400)	Anxa5 (ENSMUSG00000027712)	1810062G17Rik (ENSMUSG00000027713)	Smim43 (ENSMUSG00000085007)	Exosc9 (ENSMUSG00000027714)	Ccna2 (ENSMUSG00000027715)	Bbs7 (ENSMUSG00000037325)
Ryukyu mouse	MODERN SPECIES	12	Slc7a14 (MGP_CAROLIEiJ_G0024912)	Kcnmb2 (MGP_CAROLIEiJ_G0024913) ##7	Zmat3 (MGP_CAROLIEiJ_G0024914)	Pik3ca (MGP_CAROLIEiJ_G0024915)	Kcnmb3 (MGP_CAROLIEiJ_G0024916) #7	Zfp639 (MGP_CAROLIEiJ_G0024917) #9	MGP_CAROLIEiJ_G0024918 #10	Gnb4 (MGP_CAROLIEiJ_G0024919) #11	Actl6a (MGP_CAROLIEiJ_G0024920) #12	Mrpl47 (MGP_CAROLIEiJ_G0024921) #13	Ndufb5 (MGP_CAROLIEiJ_G0024922) #14	Usp13 (MGP_CAROLIEiJ_G0024923) #15	Pex5l (MGP_CAROLIEiJ_G0024924) #17	Ttc14 (MGP_CAROLIEiJ_G0024925) #19	Ccdc39 (MGP_CAROLIEiJ_G0024926) #20	Fxr1 (MGP_CAROLIEiJ_G0024927) #22	MGP_CAROLIEiJ_G0024928 ##23	Sox2 (MGP_CAROLIEiJ_G0024929) #24	Atp11b (MGP_CAROLIEiJ_G0024930) #26	MGP_CAROLIEiJ_G0024931 #27	Mccc1 (MGP_CAROLIEiJ_G0024932) #28	MGP_CAROLIEiJ_G0024933	MGP_CAROLIEiJ_G0024934	Zfp267 (MGP_CAROLIEiJ_G0024935)	Qrfpr (MGP_CAROLIEiJ_G0024936)	Anxa5 (MGP_CAROLIEiJ_G0024937)	MGP_CAROLIEiJ_G0024938	Exosc9 (MGP_CAROLIEiJ_G0024939)	Ccna2 (MGP_CAROLIEiJ_G0024940)	Bbs7 (MGP_CAROLIEiJ_G0024941)	Trpc3 (MGP_CAROLIEiJ_G0024942)
Shrew mouse	MODERN SPECIES	17	Cldn11 (MGP_PahariEiJ_G0026356)	Slc7a14 (MGP_PahariEiJ_G0026357)	Kcnmb2 (MGP_PahariEiJ_G0026358) ##7	Zmat3 (MGP_PahariEiJ_G0026359)	Pik3ca (MGP_PahariEiJ_G0026360)	Kcnmb3 (MGP_PahariEiJ_G0026361) #7	Zfp639 (MGP_PahariEiJ_G0026362) #9	Mfn1 (MGP_PahariEiJ_G0026363) #10	Gnb4 (MGP_PahariEiJ_G0026364) #11	Actl6a (MGP_PahariEiJ_G0026365) #12	Mrpl47 (MGP_PahariEiJ_G0026366) #13	Ndufb5 (MGP_PahariEiJ_G0026367) #14	Usp13 (MGP_PahariEiJ_G0026368) #15	Pex5l (MGP_PahariEiJ_G0026369) #17	MGP_PahariEiJ_G0026370 #19	Fxr1 (MGP_PahariEiJ_G0026371) #22	Dnajc19 (MGP_PahariEiJ_G0026372) ##23	Sox2 (MGP_PahariEiJ_G0026373) #24	MGP_PahariEiJ_G0026374 #27	Zfp267 (MGP_PahariEiJ_G0026375)	Qrfpr (MGP_PahariEiJ_G0026376)	Anxa5 (MGP_PahariEiJ_G0026377)	MGP_PahariEiJ_G0026378	Exosc9 (MGP_PahariEiJ_G0026379)	Ccna2 (MGP_PahariEiJ_G0026380)	Bbs7 (MGP_PahariEiJ_G0026381)	Trpc3 (MGP_PahariEiJ_G0026382)	Bltp1 (MGP_PahariEiJ_G0026383)	Adad1 (MGP_PahariEiJ_G0026384)	Il2 (MGP_PahariEiJ_G0026385)	Il21 (MGP_PahariEiJ_G0026386)
Rat	MODERN SPECIES	11	Egfem1 (ENSRNOG00000023908)	Kcnmb2 (ENSRNOG00000010094) ##7	Zmat3 (ENSRNOG00000063864)	Pik3ca (ENSRNOG00000056371)	Kcnmb3 (ENSRNOG00000027836) #7	Zfp639 (ENSRNOG00000043053) #9	Mfn1 (ENSRNOG00000011057) #10	Gnb4 (ENSRNOG00000011070) #11	Actl6a (ENSRNOG00000011553) #12	Mrpl47 (ENSRNOG00000011639) #13	Ndufb5 (ENSRNOG00000011949) #14	Usp13 (ENSRNOG00000030639) #15	Pex5l (ENSRNOG00000011211) #17	Ttc14 (ENSRNOG00000011261) #19	Ccdc39 (ENSRNOG00000011440) #20	Fxr1 (ENSRNOG00000051480) #22	Dnajc19 (ENSRNOG00000049819) ##23	Sox2 (ENSRNOG00000012199) #24	Atp11b (ENSRNOG00000052116) #26	Dcun1d1 (ENSRNOG00000012734) #27	Mccc1 (ENSRNOG00000013293) #28	Ccdc144b (ENSRNOG00000056177)	ENSRNOG00000065565	Acad9 (ENSRNOG00000014178)	Zfp267 (ENSRNOG00000042283)	ENSRNOG00000066024	Arsl (ENSRNOG00000028350)	Qrfpr (ENSRNOG00000014414)	Anxa5 (ENSRNOG00000014453)	Smim43 (ENSRNOG00000070831)	Exosc9 (ENSRNOG00000014674)
Cricetidae	ANCESTRAL SPECIES	6	ENSGT00950000183039.B.b.a ##7	ENSGT00730000111202	ENSGT00940000155531.b	ENSGT00950000183039.B.a #7	ENSGT00940000156335 #9	ENSGT00390000013727.d #10	ENSGT01000000214413.b.a.a #11	ENSGT00940000156305 #12	ENSGT00390000002837 #13	ENSGT00390000009980 #14	ENSGT00940000157401 #15	ENSGT00940000155931 #17	ENSGT00390000013701.g.a #19	ENSGT00390000013701.g.b #19	ENSGT00390000015010 #20	ENSGT00950000183189.a.b.a #22	ENSGT00940000154384.h.a ##23	ENSGT00940000160614 #24	ENSGT00940000156162.C.k #26	ENSGT00940000154552.b #27	ENSGT00940000156941 #28	ENSGT00940000153661.b.b	ENSGT00940000153661.a.a	ENSGT00940000157312	ENSGT00950000183169.C.d	ENSGT00940000155988	ENSGT00950000183130.A	ENSGT00940000155372	ENSGT00390000012346	ENSGT01060000248588.a.c.b	ENSGT00640000091487
Cricetidae_B	ANCESTRAL SPECIES	55	ENSGT00950000183039.B.b.a ##7	ENSGT00730000111202	ENSGT00940000155531.b	ENSGT00950000183039.B.a #7	ENSGT00940000156335 #9	ENSGT00390000013727.d #10	ENSGT01000000214413.b.a.a #11	ENSGT00940000156305 #12	ENSGT00390000002837 #13	ENSGT00390000009980 #14	ENSGT00940000157401 #15	ENSGT00940000155931 #17	ENSGT00390000013701.g.a #19	ENSGT00390000013701.g.b #19	ENSGT00390000015010 #20	ENSGT00950000183189.a.b.a #22	ENSGT00940000154384.h.a ##23	ENSGT00940000154384.g ##23	ENSGT00940000160614 #24	ENSGT00940000156162.C.k #26	ENSGT00940000154552.b #27	ENSGT00940000156941 #28	ENSGT00940000153661.b.b	ENSGT00940000157312	ENSGT00950000183169.C.d
Northern American deer mouse	MODERN SPECIES	19	Kcnmb2 (ENSPEMG00000000476) ##7	ENSPEMG00000026565	Zmat3 (ENSPEMG00000019154)	Pik3ca (ENSPEMG00000018399)	Kcnmb3 (ENSPEMG00000015081) #7	Zfp639 (ENSPEMG00000011611) #9	Mfn1 (ENSPEMG00000010348) #10	Gnb4 (ENSPEMG00000028778) #11	Actl6a (ENSPEMG00000015742) #12	Mrpl47 (ENSPEMG00000026294) #13	Ndufb5 (ENSPEMG00000018635) #14	Usp13 (ENSPEMG00000001021) #15	Pex5l (ENSPEMG00000006300) #17	Ttc14 (ENSPEMG00000013671) #19	Ccdc39 (ENSPEMG00000017829) #20	Fxr1 (ENSPEMG00000012962) #22	ENSPEMG00000006887 ##23	ENSPEMG00000026113	Sox2 (ENSPEMG00000013974) #24	ENSPEMG00000024881	Atp11b (ENSPEMG00000001656) #26	ENSPEMG00000018868 #27	Mccc1 (ENSPEMG00000014164) #28	ENSPEMG00000011597	Acad9 (ENSPEMG00000010549)	Zfp267 (ENSPEMG00000028230)	Qrfpr (ENSPEMG00000000133)	ENSPEMG00000001402	ENSPEMG00000026454	Anxa5 (ENSPEMG00000015439)	ENSPEMG00000025311
Prairie vole	MODERN SPECIES		Kcnmb2 (ENSMOCG00000017078) ##7	Zmat3 (ENSMOCG00000018844)	Pik3ca (ENSMOCG00000013980)	Kcnmb3 (ENSMOCG00000016804) #7	Zfp639 (ENSMOCG00000020301) #9	Mfn1 (ENSMOCG00000019248) #10	Gnb4 (ENSMOCG00000015281) #11	Actl6a (ENSMOCG00000014148) #12	ENSMOCG00000007933 #13	ENSMOCG00000019293 #14	Usp13 (ENSMOCG00000015377) #15	Pex5l (ENSMOCG00000014372) #17	ENSMOCG00000020574 #19	ENSMOCG00000012924 #19	Ccdc39 (ENSMOCG00000018440) #20	Fxr1 (ENSMOCG00000017707) #22	Dnajc19 (ENSMOCG00000004841) ##23	Sox2 (ENSMOCG00000008169) #24	ENSMOCG00000011558	Atp11b (ENSMOCG00000013153) #26	ENSMOCG00000005771 #27	Mccc1 (ENSMOCG00000003671) #28	ENSMOCG00000009970	Acad9 (ENSMOCG00000013263)	Zfp267 (ENSMOCG00000020503)	Scfd1 (ENSMOCG00000017239)	G2e3 (ENSMOCG00000012420)	Prkd1 (ENSMOCG00000021339)	Foxg1 (ENSMOCG00000008016)	ENSMOCG00000007728	Nova1 (ENSMOCG00000006277)
Cricetinae	ANCESTRAL SPECIES	13	ENSGT00950000183039.B.b.a ##7	ENSGT00730000111202	ENSGT00940000155531.b	ENSGT00950000183039.B.a #7	ENSGT00940000156335 #9	ENSGT00390000013727.d #10	ENSGT01000000214413.b.a.a #11	ENSGT00940000156305 #12	ENSGT00390000002837 #13	ENSGT00390000009980 #14	ENSGT00940000157401 #15	ENSGT00940000155931 #17	ENSGT00390000013701.g.a #19	ENSGT00390000013701.g.b #19	ENSGT00390000015010 #20	ENSGT00950000183189.a.b.a #22	ENSGT00940000154384.h.a ##23	ENSGT00940000160614 #24	ENSGT00940000156162.C.k #26	ENSGT00940000154552.b #27	ENSGT00940000156941 #28	ENSGT00940000153661.a.a	ENSGT00940000157312	ENSGT00950000183169.C.d	ENSGT01070000253744.a.b	ENSGT00940000155988	ENSGT00950000183130.A	ENSGT00940000155372	ENSGT00390000012346	ENSGT01060000248588.a.c.b	ENSGT00640000091487
Golden Hamster	MODERN SPECIES	636	Egfem1 (ENSMAUG00000012184)	Kcnmb2 (ENSMAUG00000006173) ##7	Zmat3 (ENSMAUG00000001986)	Pik3ca (ENSMAUG00000019874)	Kcnmb3 (ENSMAUG00000005213) #7	Mfn1 (ENSMAUG00000010778) #10	Gnb4 (ENSMAUG00000011589) #11	ENSMAUG00000018855 #12	Mrpl47 (ENSMAUG00000010772) #13	Ndufb5 (ENSMAUG00000017888) #14	Usp13 (ENSMAUG00000008996) #15	Pex5l (ENSMAUG00000011108) #17	ENSMAUG00000009258 #19	ENSMAUG00000000140 #19	Ccdc39 (ENSMAUG00000009369) #20	Fxr1 (ENSMAUG00000001188) #22	ENSMAUG00000011285 ##23	Sox2 (ENSMAUG00000017052) #24	Atp11b (ENSMAUG00000000325) #26	ENSMAUG00000018021 #27	ENSMAUG00000019275	Mccc1 (ENSMAUG00000018926) #28	ENSMAUG00000000987	ENSMAUG00000011985	Acad9 (ENSMAUG00000013695)	Zfp267 (ENSMAUG00000000240)	Qrfpr (ENSMAUG00000016873)	Anxa5 (ENSMAUG00000014445)	Exosc9 (ENSMAUG00000008629)	Ccna2 (ENSMAUG00000018247)	Bbs7 (ENSMAUG00000001973)
Chinese hamster chok1gshd	MODERN SPECIES	352	Egfem1 (ENSCGRG00001021334)	Kcnmb2 (ENSCGRG00001009106) ##7	Zmat3 (ENSCGRG00001012339)	Pik3ca (ENSCGRG00001019897)	Kcnmb3 (ENSCGRG00001008742) #7	ENSCGRG00001021748 #9	ENSCGRG00001022585 #10	Gnb4 (ENSCGRG00001021439) #11	Actl6a (ENSCGRG00001013395) #12	Mrpl47 (ENSCGRG00001015111) #13	Ndufb5 (ENSCGRG00001005505) #14	Usp13 (ENSCGRG00001017123) #15	Pex5l (ENSCGRG00001018482) #17	Ttc14 (ENSCGRG00001021605) #19	Ccdc39 (ENSCGRG00001018347) #20	Fxr1 (ENSCGRG00001024795) #22	ENSCGRG00001000090 ##23	Sox2 (ENSCGRG00001008732) #24	Atp11b (ENSCGRG00001021308) #26	ENSCGRG00001013592	ENSCGRG00001019778 #27	Mccc1 (ENSCGRG00001012469) #28	ENSCGRG00001017668	Acad9 (ENSCGRG00001017444)	Zfp267 (ENSCGRG00001019794)	Qrfpr (ENSCGRG00001015065)	Anxa5 (ENSCGRG00001011395)	Exosc9 (ENSCGRG00001023030)	Ccna2 (ENSCGRG00001021415)	Bbs7 (ENSCGRG00001022476)	Trpc3 (ENSCGRG00001021196)
Upper Galilee mountains blind mole rat	MODERN SPECIES	1036		Kcnmb2 (ENSNGAG00000023449) ##7	Zmat3 (ENSNGAG00000023602)	Pik3ca (ENSNGAG00000011770)	Kcnmb3 (ENSNGAG00000023104) #7	Zfp639 (ENSNGAG00000017433) #9	Mfn1 (ENSNGAG00000022452) #10	Gnb4 (ENSNGAG00000023855) #11	Actl6a (ENSNGAG00000023000) #12	Mrpl47 (ENSNGAG00000022354) #13	Ndufb5 (ENSNGAG00000019121) #14	Usp13 (ENSNGAG00000008457) #15	Pex5l (ENSNGAG00000021052) #17	Ttc14 (ENSNGAG00000019537) #19	Ccdc39 (ENSNGAG00000023870) #20	Fxr1 (ENSNGAG00000021726) #22	ENSNGAG00000012574 ##23
Lesser Egyptian jerboa	MODERN SPECIES	47	ENSJJAG00000012112	Kcnmb2 (ENSJJAG00000021914) ##7	Zmat3 (ENSJJAG00000004288)	Pik3ca (ENSJJAG00000021453)	Kcnmb3 (ENSJJAG00000023050) #7	ENSJJAG00000024013 #9	Mfn1 (ENSJJAG00000019731) #10	ENSJJAG00000023681 #11	Actl6a (ENSJJAG00000017810) #12	Mrpl47 (ENSJJAG00000020002) #13	Ndufb5 (ENSJJAG00000012502) #14	Usp13 (ENSJJAG00000018696) #15	Pex5l (ENSJJAG00000000620) #17	ENSJJAG00000023040 #19	Ccdc39 (ENSJJAG00000016989) #20	Fxr1 (ENSJJAG00000019175) #22	ENSJJAG00000015744 ##23	Sox2 (ENSJJAG00000002483) #24	Atp11b (ENSJJAG00000018460) #26	ENSJJAG00000019826 #27	Mccc1 (ENSJJAG00000003543) #28	ENSJJAG00000016856	Ptpdc1 (ENSJJAG00000015386)	Barx1 (ENSJJAG00000012954)	ENSJJAG00000016156	Phf2 (ENSJJAG00000019075)	Fam120a (ENSJJAG00000010692)	Wnk2 (ENSJJAG00000019510)	ENSJJAG00000015723	Card19 (ENSJJAG00000018218)	Susd3 (ENSJJAG00000023422)
Kangaroo rat	MODERN SPECIES	493					Zfp639 (ENSDORG00000004733) #9	Mfn1 (ENSDORG00000016388) #10	Gnb4 (ENSDORG00000015363) #11	Actl6a (ENSDORG00000007648) #12	Mrpl47 (ENSDORG00000007650) #13	Ndufb5 (ENSDORG00000007651) #14	ENSDORG00000001060	Usp13 (ENSDORG00000013004) #15	Pex5l (ENSDORG00000013007) #17	Ttc14 (ENSDORG00000002727) #19	Ccdc39 (ENSDORG00000002728) #20	Fxr1 (ENSDORG00000005853) #22	ENSDORG00000005862 ##23
Lagomorpha	ANCESTRAL SPECIES	6	ENSGT00940000153421.a.b	ENSGT00950000183039.B.b.a ##7	ENSGT00730000111202	ENSGT00940000155531.b	ENSGT00950000183039.B.a #7	ENSGT00390000013727.d #10	ENSGT01000000214413.b.a.a #11	ENSGT00940000156305 #12	ENSGT00390000002837 #13	ENSGT00390000009980 #14	ENSGT00940000157401 #15	ENSGT00910000147128	ENSGT00940000155931 #17	ENSGT00390000013701 #19	ENSGT00390000015010 #20	ENSGT00950000183189.a.b.a #22	ENSGT00940000154384.h.a ##23	ENSGT00940000156162.C.k #26	ENSGT00940000154552.b #27	ENSGT00940000156941 #28	ENSGT00950000182899.C.a	ENSGT00550000074917	ENSGT00940000153783.b.b.c.a.b	ENSGT00860000135739	ENSGT00950000182930.B	ENSGT00950000182930.A.a	ENSGT00950000182930.A.b	ENSGT00950000182930.C	ENSGT00940000155792	ENSGT00470000042284	ENSGT00940000160342
Rabbit	MODERN SPECIES	5	TBL1XR1 (ENSOCUG00000017078)	KCNMB2 (ENSOCUG00000005494) ##7	ZMAT3 (ENSOCUG00000004658)	PIK3CA (ENSOCUG00000010631)	KCNMB3 (ENSOCUG00000010643) #7	MFN1 (ENSOCUG00000000928) #10	GNB4 (ENSOCUG00000000931) #11	ACTL6A (ENSOCUG00000017883) #12	MRPL47 (ENSOCUG00000017886) #13	NDUFB5 (ENSOCUG00000017887) #14	USP13 (ENSOCUG00000006043) #15	ENSOCUG00000039309	PEX5L (ENSOCUG00000006053) #17	TTC14 (ENSOCUG00000000806) #19	CCDC39 (ENSOCUG00000000812) #20	FXR1 (ENSOCUG00000023518) #22	DNAJC19 (ENSOCUG00000014043) ##23	ENSOCUG00000035765	ENSOCUG00000031658	ENSOCUG00000028029	ATP11B (ENSOCUG00000012358) #26	DCUN1D1 (ENSOCUG00000012386) #27	MCCC1 (ENSOCUG00000012393) #28	ENSOCUG00000005563	RFC4 (ENSOCUG00000005014)	ENSOCUG00000005011	ENSOCUG00000031344	KNG1 (ENSOCUG00000005003)	HRG (ENSOCUG00000011687)	FETUB (ENSOCUG00000001032)	AHSG (ENSOCUG00000002057)
Pika	MODERN SPECIES	365																FXR1 (ENSOPRG00000009223) #22	DNAJC19 (ENSOPRG00000009256) ##23
Tree shrew	MODERN SPECIES	553																ENSTBEG00000007370 #22
Primates	ANCESTRAL SPECIES	1	ENSGT00940000155531.b	ENSGT00910000147422	ENSGT00950000183039.B.a #7	ENSGT00940000156335 #9	ENSGT00390000013727.d #10	ENSGT01000000214413.b.a.a #11	ENSGT00940000156305 #12	ENSGT00390000002837 #13	ENSGT00960000190585	ENSGT00390000009980 #14	ENSGT00940000157401 #15	ENSGT00910000147128	ENSGT00940000155931 #17	ENSGT00390000013701 #19	ENSGT00390000015010 #20	ENSGT00950000183189.a.b.a #22	ENSGT00940000154384.h.a ##23	ENSGT00940000160614 #24	ENSGT00910000146924	ENSGT00940000156162.C.k #26	ENSGT00940000154552.b #27	ENSGT00940000156941 #28	ENSGT00950000182899.C.a	ENSGT00940000164015 #29	ENSGT00940000159676 #31	ENSGT00940000161734 #32	ENSGT00940000154345.b #33	ENSGT00940000154345.a #34	ENSGT00940000156789 #35	ENSGT00530000063947.B #36	ENSGT00390000013063 #37
Strepsirrhini	ANCESTRAL SPECIES	1	ENSGT00730000111202	ENSGT00940000155531.b	ENSGT00950000183039.B.a #7	ENSGT00940000156335 #9	ENSGT00390000013727.d #10	ENSGT01000000214413.b.a.a #11	ENSGT00940000156305 #12	ENSGT00390000002837 #13	ENSGT00960000190585	ENSGT00390000009980.p #14	ENSGT00940000157401 #15	ENSGT00910000147128	ENSGT00940000155931 #17	ENSGT00390000013701 #19	ENSGT00390000015010 #20	ENSGT00950000183189.a.b.a #22	ENSGT00940000154384.h.a ##23	ENSGT00940000160614 #24	ENSGT00910000146924	ENSGT00940000156162.C.k #26	ENSGT00940000154552.b #27	ENSGT00940000156941 #28	ENSGT00950000182899.C.a	ENSGT00940000161734 #32	ENSGT00940000159676 #31	ENSGT00940000154345.b #33	ENSGT00940000154345.a #34	ENSGT00940000156789 #35	ENSGT00530000063947.B #36	ENSGT00390000013063 #37	ENSGT00940000163497
Lemuriformes	ANCESTRAL SPECIES	9	ENSGT00730000111202	ENSGT00940000155531.b	ENSGT00950000183039.B.a #7	ENSGT00940000156335 #9	ENSGT00390000013727.d #10	ENSGT01000000214413.b.a.a #11	ENSGT00940000156305 #12	ENSGT00390000002837 #13	ENSGT00960000190585	ENSGT00390000009980.p #14	ENSGT00940000157401 #15	ENSGT00910000147128	ENSGT00940000155931 #17	ENSGT00390000013701 #19	ENSGT00390000015010 #20	ENSGT00950000183189.a.b.a #22	ENSGT00940000154384.h.a.g.a ##23	ENSGT00940000160614 #24	ENSGT00910000146924	ENSGT00940000156162.C.k #26	ENSGT00940000154552.b #27	ENSGT00940000156941 #28	ENSGT00950000182899.C.a	ENSGT00940000159676 #31	ENSGT00940000161734 #32	ENSGT00940000164826	ENSGT00940000154345.b #33	ENSGT00940000154345.a #34	ENSGT00940000156789 #35	ENSGT00530000063947.B #36	ENSGT00390000013063 #37
Lemuriformes_a	ANCESTRAL SPECIES	9	ENSGT00730000111202	ENSGT00940000155531.b	ENSGT00950000183039.B.a #7	ENSGT00940000156335 #9	ENSGT00390000013727.d #10	ENSGT01000000214413.b.a.a #11	ENSGT00940000156305 #12	ENSGT00390000002837 #13	ENSGT00960000190585	ENSGT00390000009980.p #14	ENSGT00940000157401 #15	ENSGT00910000147128	ENSGT00940000155931 #17	ENSGT00390000013701 #19	ENSGT00390000015010 #20	ENSGT00950000183189.a.b.a #22	ENSGT00940000154384.h.a.g.a ##23	ENSGT00940000160614 #24	ENSGT00940000156162.C.k #26	ENSGT00940000154552.b #27	ENSGT00940000156941 #28	ENSGT00950000182899.C.a	ENSGT00940000161734 #32	ENSGT00940000164826	ENSGT00940000154345.b #33	ENSGT00940000154345.a #34	ENSGT00940000156789 #35	ENSGT00530000063947.B #36	ENSGT00390000013063 #37	ENSGT00940000163497	ENSGT00940000155470.b
Greater bamboo lemur	MODERN SPECIES	177												ENSPSMG00000011929 #20	ENSPSMG00000011919	ENSPSMG00000011908	ENSPSMG00000011886	FXR1 (ENSPSMG00000011829) #22	ENSPSMG00000011691 ##23	ENSPSMG00000011678	SOX2 (ENSPSMG00000011661) #24	ENSPSMG00000011653
Coquerels sifaka	MODERN SPECIES	162	ZNF639 (ENSPCOG00000025183) #9	MFN1 (ENSPCOG00000018204) #10	GNB4 (ENSPCOG00000023050) #11	ENSPCOG00000023805	ACTL6A (ENSPCOG00000027739) #12	MRPL47 (ENSPCOG00000019367) #13	ENSPCOG00000025389 #14	ENSPCOG00000023588 #14	USP13 (ENSPCOG00000000179) #15	ENSPCOG00000028880	PEX5L (ENSPCOG00000002922) #17	TTC14 (ENSPCOG00000027629) #19	CCDC39 (ENSPCOG00000018971) #20	ENSPCOG00000026996	ENSPCOG00000025037	FXR1 (ENSPCOG00000020057) #22	DNAJC19 (ENSPCOG00000022644) ##23
Mouse lemur	DUPLICATION
Mouse lemur	MODERN SPECIES		ZMAT3 (ENSMICG00000049501)	PIK3CA (ENSMICG00000049155)	KCNMB3 (ENSMICG00000048999) #7	ENSMICG00000048810 #9	MFN1 (ENSMICG00000049257) #10	GNB4 (ENSMICG00000049251) #11	ACTL6A (ENSMICG00000049032) #12	MRPL47 (ENSMICG00000049377) #13	ENSMICG00000049551 #14	USP13 (ENSMICG00000049124) #15	ENSMICG00000049219	PEX5L (ENSMICG00000048938) #17	TTC14 (ENSMICG00000049351) #19	CCDC39 (ENSMICG00000048849) #20	ENSMICG00000049410	ENSMICG00000048978 #22	ENSMICG00000049008 ##23	ENSMICG00000049314	ENSMICG00000049506	SOX2 (ENSMICG00000049239) #24	ENSMICG00000048904	ATP11B (ENSMICG00000049475) #26	ENSMICG00000049045 #27	MCCC1 (ENSMICG00000048884) #28	ENSMICG00000049005	MCF2L2 (ENSMICG00000049191) #32	B3GNT5 (ENSMICG00000049049) #31	ENSMICG00000049437	ENSMICG00000049467	KLHL24 (ENSMICG00000049481) #34	YEATS2 (ENSMICG00000049411) #35
Mouse lemur	MODERN SPECIES	28	ENSMICG00000003714	ENSMICG00000044751	ENSMICG00000031829	HLA-DOB (ENSMICG00000034483)	TAP2 (ENSMICG00000015245)	PSMB8 (ENSMICG00000015254)	TAP1 (ENSMICG00000015264)	PSMB9 (ENSMICG00000015307)	ENSMICG00000031166	ENSMICG00000035395	SFTA2 (ENSMICG00000030909)	SYNGAP1 (ENSMICG00000005678)	CUTA (ENSMICG00000005673)	PHF1 (ENSMICG00000005660)	KIFC1 (ENSMICG00000005648)	ENSMICG00000033163 #22	DAXX (ENSMICG00000000933)	TAPBP (ENSMICG00000042293)	RGL2 (ENSMICG00000000926)	PFDN6 (ENSMICG00000000922)	WDR46 (ENSMICG00000000916)	ENSMICG00000035485	VPS52 (ENSMICG00000027900)	RING1 (ENSMICG00000030050)	HSD17B8 (ENSMICG00000000908)	SLC39A7 (ENSMICG00000000905)	RXRB (ENSMICG00000000899)	COL11A2 (ENSMICG00000000879)	ENSMICG00000001373	HLA-DPB1 (ENSMICG00000030867)	HLA-DPA1 (ENSMICG00000003711)
Bushbaby	MODERN SPECIES	281																FXR1 (ENSOGAG00000008751) #22	ENSOGAG00000008754 ##23	SOX2 (ENSOGAG00000029165) #24	ATP11B (ENSOGAG00000005672) #26	DCUN1D1 (ENSOGAG00000000658) #27	MCCC1 (ENSOGAG00000000659) #28	ENSOGAG00000000661	MCF2L2 (ENSOGAG00000000662) #32	B3GNT5 (ENSOGAG00000027145) #31	KLHL6 (ENSOGAG00000000666) #33	KLHL24 (ENSOGAG00000033529) #34	YEATS2 (ENSOGAG00000013954) #35	MAP6D1 (ENSOGAG00000030318) #36	PARL (ENSOGAG00000006126) #37	VPS53 (ENSOGAG00000001350)	TLCD3A (ENSOGAG00000001351)
Haplorrhini	ANCESTRAL SPECIES	5	ENSGT00730000111202	ENSGT00940000155531.b	ENSGT00910000147422	ENSGT00950000183039.B.a #7	ENSGT00940000156335 #9	ENSGT00390000013727.d #10	ENSGT01000000214413.b.a.a #11	ENSGT00940000156305 #12	ENSGT00390000002837 #13	ENSGT00390000009980 #14	ENSGT00940000157401 #15	ENSGT00910000147128	ENSGT00940000155931 #17	ENSGT00390000013701 #19	ENSGT00390000015010 #20	ENSGT00950000183189.a.b.a #22	ENSGT00940000154384.h.a ##23	ENSGT00940000160614 #24	ENSGT00910000146924	ENSGT00940000156162.C.k #26	ENSGT00940000154552.b #27	ENSGT00940000156941 #28	ENSGT00950000182899.C.a	ENSGT00940000164015 #29	ENSGT00940000159676 #31	ENSGT00940000161734 #32	ENSGT00940000154345.b #33	ENSGT00940000154345.a #34	ENSGT00940000156789 #35	ENSGT00530000063947.B #36	ENSGT00390000013063 #37
Tarsier	MODERN SPECIES	6410																FXR1 (ENSTSYG00000001610) #22	DNAJC19 (ENSTSYG00000001611) ##23	MAF (ENSTSYG00000027792)
Simiiformes	ANCESTRAL SPECIES	1	ENSGT00730000111202	ENSGT00940000155531.b	ENSGT00910000147422	ENSGT00950000183039.B.a #7	ENSGT00940000156335 #9	ENSGT00390000013727.d #10	ENSGT01000000214413.b.a.a #11	ENSGT00940000156305 #12	ENSGT00390000002837 #13	ENSGT00390000009980 #14	ENSGT00940000157401 #15	ENSGT00910000147128	ENSGT00940000155931 #17	ENSGT00390000013701 #19	ENSGT00390000015010 #20	ENSGT00950000183189.a.b.a #22	ENSGT00940000154384.h.a ##23	ENSGT00940000160614 #24	ENSGT00910000146924	ENSGT00940000156162.C.k #26	ENSGT00940000154552.b #27	ENSGT00940000156941 #28	ENSGT00950000182899.C.a	ENSGT00940000164015 #29	ENSGT00940000159676 #31	ENSGT00940000161734 #32	ENSGT00940000154345.b #33	ENSGT00940000154345.a #34	ENSGT00940000156789 #35	ENSGT00530000063947.B #36	ENSGT00390000013063 #37
Platyrrhini	ANCESTRAL SPECIES	43	ENSGT00950000183039.B.b.a ##7	ENSGT00730000111202	ENSGT00940000155531.b	ENSGT00950000183039.B.a #7	ENSGT00940000156335 #9	ENSGT00390000013727.d #10	ENSGT01000000214413.b.a.a #11	ENSGT00940000156305 #12	ENSGT00390000002837.r #13	ENSGT00390000009980 #14	ENSGT00940000157401 #15	ENSGT00910000147128	ENSGT00940000155931 #17	ENSGT00390000013701 #19	ENSGT00390000015010 #20	ENSGT00950000183189.a.b.a #22	ENSGT00940000154384.h.a.c.b ##23	ENSGT00940000156162.C.k #26	ENSGT00940000154552.b.f #27	ENSGT00940000156941.j #28	ENSGT00950000182899.C.a	ENSGT00940000161734 #32	ENSGT00940000159676 #31	ENSGT00940000154345.b #33	ENSGT00940000154345.a #34	ENSGT00940000156789 #35	ENSGT00530000063947.B #36	ENSGT00390000013063.p #37	ENSGT00940000155470.b	ENSGT00940000156739.b.b.a	ENSGT00940000156739.b.a
Mas night monkey	MODERN SPECIES	793																FXR1 (ENSANAG00000026001) #22	DNAJC19 (ENSANAG00000023901) ##23	SOX2 (ENSANAG00000000047) #24	ENSANAG00000023464	ENSANAG00000018148	ATP11B (ENSANAG00000033054) #26	ENSANAG00000020880 #27	MCCC1 (ENSANAG00000028235) #28	LAMP3 (ENSANAG00000021411) #29	MCF2L2 (ENSANAG00000030096) #32	KLHL6 (ENSANAG00000034934) #33	KLHL24 (ENSANAG00000030957) #34	ENSANAG00000032967	YEATS2 (ENSANAG00000034729) #35	MAP6D1 (ENSANAG00000031904) #36	ENSANAG00000028369
Cebidae	ANCESTRAL SPECIES	14	ENSGT00950000183039.B.b.a ##7	ENSGT00730000111202	ENSGT00940000155531.b	ENSGT00950000183039.B.a #7	ENSGT00940000156335 #9	ENSGT00390000013727.d #10	ENSGT01000000214413.b.a.a #11	ENSGT00940000156305 #12	ENSGT00390000002837.r #13	ENSGT00390000002837.q #13	ENSGT00390000009980 #14	ENSGT00940000157401 #15	ENSGT00940000155931 #17	ENSGT00390000013701 #19	ENSGT00390000015010 #20	ENSGT00950000183189.a.b.a #22	ENSGT00940000154384.h.a.c.b.a ##23	ENSGT00940000160614 #24	ENSGT00940000156162.C.k #26	ENSGT00940000154552.b.f #27	ENSGT00940000156941.j #28	ENSGT00950000182899.C.a	ENSGT00940000161734 #32	ENSGT00940000159676 #31	ENSGT00940000154345.b #33	ENSGT00940000154345.a #34	ENSGT00940000156789 #35	ENSGT00530000063947.B #36	ENSGT00390000013063.p #37	ENSGT00940000155470.b	ENSGT00940000156739.b.b.a
Marmoset	MODERN SPECIES	6	PIK3CA (ENSCJAG00000013294)	GNB4 (ENSCJAG00000064977) #11	ENSCJAG00000069983 #7	ZNF639 (ENSCJAG00000013246) #9	MFN1 (ENSCJAG00000013155) #10	ACTL6A (ENSCJAG00000013036) #12	ENSCJAG00000013028 #13	NDUFB5 (ENSCJAG00000013015) #14	ENSCJAG00000039957	USP13 (ENSCJAG00000012999) #15	ENSCJAG00000077201	PEX5L (ENSCJAG00000012957) #17	ENSCJAG00000081830	TTC14 (ENSCJAG00000012923) #19	CCDC39 (ENSCJAG00000012901) #20	FXR1 (ENSCJAG00000012802) #22	ENSCJAG00000012795 ##23	ENSCJAG00000069793	ENSCJAG00000080211	SOX2 (ENSCJAG00000008401) #24	ENSCJAG00000070332	ENSCJAG00000076627	ENSCJAG00000072440	ENSCJAG00000076242	ATP11B (ENSCJAG00000005176) #26	DCUN1D1 (ENSCJAG00000005148) #27	MCCC1 (ENSCJAG00000005103) #28	ENSCJAG00000081113	MCF2L2 (ENSCJAG00000021205) #32	B3GNT5 (ENSCJAG00000059459) #31	KLHL6 (ENSCJAG00000021212) #33
Cebidae_a	ANCESTRAL SPECIES	14	ENSGT00950000183039.B.b.a ##7	ENSGT00730000111202	ENSGT00940000155531.b	ENSGT00950000183039.B.a #7	ENSGT00940000156335 #9	ENSGT00390000013727.d #10	ENSGT01000000214413.b.a.a #11	ENSGT00940000156305 #12	ENSGT00390000002837.r #13	ENSGT00390000014814.a.b.a.a.b	ENSGT00390000009980 #14	ENSGT00940000157401 #15	ENSGT00940000155931 #17	ENSGT00390000013701 #19	ENSGT00390000015010 #20	ENSGT00950000183189.a.b.a #22	ENSGT00940000154384.h.a.c.b.a.a ##23	ENSGT00940000160614 #24	ENSGT00940000156162.C.k #26	ENSGT00940000154552.b.f #27	ENSGT00940000156941.j #28	ENSGT00950000182899.C.a	ENSGT00940000161734 #32	ENSGT00940000154345.b #33	ENSGT00940000154345.a #34	ENSGT00940000156789 #35	ENSGT00530000063947.B #36	ENSGT00390000013063.p #37	ENSGT00940000155470.b	ENSGT00940000156739.b.b.a	ENSGT00940000156739.b.a
Bolivian squirrel monkey	MODERN SPECIES	62	KCNMB2 (ENSSBOG00000024312) ##7	ZMAT3 (ENSSBOG00000033332)	PIK3CA (ENSSBOG00000020045)	KCNMB3 (ENSSBOG00000022343) #7	ZNF639 (ENSSBOG00000025502) #9	MFN1 (ENSSBOG00000034184) #10	GNB4 (ENSSBOG00000029068) #11	ACTL6A (ENSSBOG00000027162) #12	MRPL47 (ENSSBOG00000018241) #13	ENSSBOG00000016971	ENSSBOG00000029840 #14	USP13 (ENSSBOG00000026837) #15	PEX5L (ENSSBOG00000027789) #17	TTC14 (ENSSBOG00000024686) #19	CCDC39 (ENSSBOG00000027250) #20	FXR1 (ENSSBOG00000033567) #22	ENSSBOG00000026921 ##23	ATP11B (ENSSBOG00000025969) #26	DCUN1D1 (ENSSBOG00000028062) #27	MCCC1 (ENSSBOG00000026219) #28	ENSSBOG00000021035	MCF2L2 (ENSSBOG00000029425) #32	KLHL6 (ENSSBOG00000020503) #33	KLHL24 (ENSSBOG00000034313) #34	YEATS2 (ENSSBOG00000024142) #35	ENSSBOG00000029528	ENSSBOG00000026916 #36	PARL (ENSSBOG00000023148) #37	ABCC5 (ENSSBOG00000021176)	ENSSBOG00000013776	HTR3C (ENSSBOG00000029560)
Capuchin	MODERN SPECIES	111	ENSCCAG00000033379	ETV5 (ENSCCAG00000020480)	DGKG (ENSCCAG00000029064)	CRYGS (ENSCCAG00000024626)	TBCCD1 (ENSCCAG00000034607)	DNAJB11 (ENSCCAG00000036818)	AHSG (ENSCCAG00000035436)	FETUB (ENSCCAG00000023367)	HRG (ENSCCAG00000018171)	KNG1 (ENSCCAG00000031351)	ENSCCAG00000026259	ENSCCAG00000021313	EIF4A2 (ENSCCAG00000036268)	RFC4 (ENSCCAG00000029943)	ADIPOQ (ENSCCAG00000031131)	FXR1 (ENSCCAG00000025006) #22	ENSCCAG00000031123 ##23	SOX2 (ENSCCAG00000020109) #24	TCF7L2 (ENSCCAG00000031432)	HABP2 (ENSCCAG00000031203)	NRAP (ENSCCAG00000022013)
Catarrhini	ANCESTRAL SPECIES	2	ENSGT00530000063564.b.e.b	ENSGT00940000156335 #9	ENSGT00390000013727.d #10	ENSGT01000000214413.b.a.a #11	ENSGT00940000154863.db.d	ENSGT00940000156305 #12	ENSGT00390000002837 #13	ENSGT00390000009980 #14	ENSGT00940000157401 #15	ENSGT00910000147128	ENSGT00940000155931 #17	ENSGT00940000154639.n.a	ENSGT00390000013701 #19	ENSGT00390000015010 #20	ENSGT00940000154942.h.q.b	ENSGT00950000183189.a.b.a #22	ENSGT00940000154384.h.a ##23	ENSGT00940000160614 #24	ENSGT00910000146924	ENSGT00940000156162.C.k #26	ENSGT00940000154552.b.g.a #27	ENSGT00940000156941 #28	ENSGT00940000164015 #29	ENSGT00940000159676 #31	ENSGT00940000161734 #32	ENSGT00940000154345.b #33	ENSGT00940000154345.a #34	ENSGT00940000156789 #35	ENSGT00910000147149	ENSGT00530000063947.B #36	ENSGT00390000013063 #37
Cercopithecidae	ANCESTRAL SPECIES	1	ENSGT00940000156335.o #9	ENSGT00390000013727.d #10	ENSGT00910000147799	ENSGT01000000214413.b.a.a #11	ENSGT00940000154863.db.d	ENSGT00940000156305 #12	ENSGT00390000002837 #13	ENSGT00390000009980 #14	ENSGT00940000157401 #15	ENSGT00910000147128	ENSGT00940000155931 #17	ENSGT00940000154639.n.a	ENSGT00390000013701 #19	ENSGT00390000015010 #20	ENSGT00940000154942.h.q.b	ENSGT00950000183189.a.b.a #22	ENSGT00940000154384.h.a ##23	ENSGT00940000160614 #24	ENSGT00910000146924	ENSGT00940000156162.C.k #26	ENSGT00940000154552.b.g.a #27	ENSGT00940000156941 #28	ENSGT00950000182899.C.a	ENSGT00940000159676 #31	ENSGT00940000161734 #32	ENSGT00940000154345.b #33	ENSGT00940000154345.a #34	ENSGT00940000156789 #35	ENSGT00910000147149	ENSGT00530000063947.B #36	ENSGT00390000013063 #37
Rhinopithecus	ANCESTRAL SPECIES	202	ENSGT00940000155531.b	ENSGT00950000183039.B.a #7	ENSGT00940000156335.o #9	ENSGT00390000013727.d #10	ENSGT00910000147799	ENSGT01000000214413.b.a.a #11	ENSGT00940000154863.db.d	ENSGT00940000156305 #12	ENSGT00390000002837 #13	ENSGT00390000009980.s #14	ENSGT00940000157401 #15	ENSGT00940000155931 #17	ENSGT00940000154639.n.a	ENSGT00390000013701 #19	ENSGT00390000015010 #20	ENSGT00950000183189.a.b.a #22	ENSGT00940000154384.h.a ##23	ENSGT00940000160614 #24	ENSGT00910000146924	ENSGT00940000154194	ENSGT00940000158205	ENSGT00940000155196.q.a	ENSGT00940000162645	ENSGT00910000146913	ENSGT00940000163645
Golden snub-nosed monkey	MODERN SPECIES	2754														TTC14 (ENSRROG00000045769) #19	CCDC39 (ENSRROG00000039226) #20	FXR1 (ENSRROG00000034524) #22	DNAJC19 (ENSRROG00000033780) ##23
Black snub-nosed monkey	MODERN SPECIES	74	PIK3CA (ENSRBIG00000032867)	KCNMB3 (ENSRBIG00000028540) #7	ENSRBIG00000041214 #9	MFN1 (ENSRBIG00000035520) #10	ENSRBIG00000029392	GNB4 (ENSRBIG00000026920) #11	ENSRBIG00000032218	ACTL6A (ENSRBIG00000036584) #12	MRPL47 (ENSRBIG00000030725) #13	ENSRBIG00000005151 #14	USP13 (ENSRBIG00000035081) #15	PEX5L (ENSRBIG00000020184) #17	ENSRBIG00000033160	TTC14 (ENSRBIG00000039635) #19	CCDC39 (ENSRBIG00000038461) #20	FXR1 (ENSRBIG00000036968) #22	DNAJC19 (ENSRBIG00000041203) ##23	ENSRBIG00000031071	ENSRBIG00000029493
Cercopithecinae	ANCESTRAL SPECIES	5	ENSGT00530000063564.b.e.b	ENSGT00940000156335.o #9	ENSGT00390000013727.d #10	ENSGT00910000147799	ENSGT01000000214413.b.a.a #11	ENSGT00940000154863.db.d	ENSGT00940000156305 #12	ENSGT00390000002837 #13	ENSGT00390000009980 #14	ENSGT00940000157401 #15	ENSGT00910000147128	ENSGT00940000155931 #17	ENSGT00390000013701 #19	ENSGT00390000015010 #20	ENSGT00940000154942.h.q.b	ENSGT00950000183189.a.b.a #22	ENSGT00940000154384.h.a ##23	ENSGT00940000160614 #24	ENSGT00910000146924	ENSGT00940000156162.C.k #26	ENSGT00940000154552.b.g.a #27	ENSGT00940000156941 #28	ENSGT00940000164015 #29	ENSGT00940000159676 #31	ENSGT00940000161734 #32	ENSGT00940000154345.b #33	ENSGT00940000154345.a #34	ENSGT00940000156789 #35	ENSGT00910000147149	ENSGT00530000063947.B #36	ENSGT00390000013063 #37
Cercopithecinae_a	ANCESTRAL SPECIES	5	ENSGT00940000156335.o #9	ENSGT00390000013727.d #10	ENSGT00910000147799	ENSGT01000000214413.b.a.a #11	ENSGT00940000154863.db.d	ENSGT00940000156305 #12	ENSGT00390000002837.m #13	ENSGT00390000009980 #14	ENSGT00940000157401 #15	ENSGT00910000147128	ENSGT00940000155931 #17	ENSGT00940000154639.n.a	ENSGT00390000013701 #19	ENSGT00390000015010 #20	ENSGT00940000154942.h.q.b	ENSGT00950000183189.a.b.a #22	ENSGT00940000154384.h.a ##23	ENSGT00940000160614 #24	ENSGT00910000147968	ENSGT00910000146924	ENSGT00940000156162.C.k #26	ENSGT00940000154552.b.g.a #27	ENSGT00940000156941 #28	ENSGT00940000164015 #29	ENSGT00940000159676 #31	ENSGT00940000161734 #32	ENSGT00940000154345.b #33	ENSGT00940000154345.a #34	ENSGT00940000156789 #35	ENSGT00910000147139	ENSGT00910000147149
Cercopithecinae_b	ANCESTRAL SPECIES		ENSGT00530000063564.b.e.b	ENSGT00940000156335.o #9	ENSGT00390000013727.d #10	ENSGT00910000147799	ENSGT01000000214413.b.a.a #11	ENSGT00940000154863.db.d	ENSGT00940000156305 #12	ENSGT00390000002837.m #13	ENSGT00390000009980 #14	ENSGT00940000157401 #15	ENSGT00910000147128	ENSGT00940000155931 #17	ENSGT00390000013701 #19	ENSGT00390000015010 #20	ENSGT00940000154942.h.q.b	ENSGT00950000183189.a.b.a #22	ENSGT00940000154384.h.a ##23	ENSGT00940000160614 #24	ENSGT00910000147968	ENSGT00910000146924	ENSGT00940000156162.C.k #26	ENSGT00940000154552.b.g.a #27	ENSGT00940000156941 #28	ENSGT00940000164015 #29	ENSGT00940000159676 #31	ENSGT00940000161734 #32	ENSGT00940000154345.b #33	ENSGT00940000154345.a #34	ENSGT00940000156789 #35	ENSGT00910000147139	ENSGT00910000147149
Cercopithecinae_d	ANCESTRAL SPECIES	52													ENSGT00390000013701 #19	ENSGT00390000015010 #20	ENSGT00940000154942.h.q.b	ENSGT00950000183189.a.b.a #22	ENSGT00940000154384.h.a ##23	ENSGT00940000160614 #24	ENSGT00910000147968	ENSGT00910000146924	ENSGT00940000156162.C.k #26	ENSGT00940000154552.b.g.a #27	ENSGT00940000156941 #28	ENSGT00940000164015 #29	ENSGT00940000159676 #31	ENSGT00940000161734 #32	ENSGT00940000154345.b #33	ENSGT00940000154345.a #34	ENSGT00940000156789 #35	ENSGT00910000147139	ENSGT00910000147149
Sooty mangabey	MODERN SPECIES	292													TTC14 (ENSCATG00000031048) #19	CCDC39 (ENSCATG00000039842) #20	ENSCATG00000032808	FXR1 (ENSCATG00000040925) #22	DNAJC19 (ENSCATG00000035477) ##23	SOX2 (ENSCATG00000016562) #24	ENSCATG00000016756	ENSCATG00000035017	ATP11B (ENSCATG00000038132) #26	DCUN1D1 (ENSCATG00000036712) #27	MCCC1 (ENSCATG00000037699) #28	LAMP3 (ENSCATG00000044257) #29	MCF2L2 (ENSCATG00000012769) #32	B3GNT5 (ENSCATG00000023620) #31
Drill	MODERN SPECIES	1598													TTC14 (ENSMLEG00000000458) #19	CCDC39 (ENSMLEG00000033624) #20	ENSMLEG00000040737	FXR1 (ENSMLEG00000041270) #22	DNAJC19 (ENSMLEG00000040727) ##23
Olive baboon	MODERN SPECIES	11	MFN1 (ENSPANG00000018156) #10	GNB4 (ENSPANG00000018882) #11	ENSPANG00000010712	ENSPANG00000048993	ACTL6A (ENSPANG00000024431) #12	ENSPANG00000008191 #13	NDUFB5 (ENSPANG00000008899) #14	USP13 (ENSPANG00000008384) #15	PEX5L (ENSPANG00000011898) #17	ENSPANG00000037628	TTC14 (ENSPANG00000011012) #19	CCDC39 (ENSPANG00000018158) #20	ENSPANG00000031815	ENSPANG00000042364	ENSPANG00000042486	FXR1 (ENSPANG00000011899) #22	DNAJC19 (ENSPANG00000034438) ##23	ENSPANG00000040162	ENSPANG00000044238	ENSPANG00000047546	ENSPANG00000051099	ENSPANG00000034153	ATP11B (ENSPANG00000015886) #26	DCUN1D1 (ENSPANG00000008386) #27	MCCC1 (ENSPANG00000006870) #28	LAMP3 (ENSPANG00000008975) #29	B3GNT5 (ENSPANG00000005729) #31	MCF2L2 (ENSPANG00000017801) #32	KLHL6 (ENSPANG00000010027) #33	KLHL24 (ENSPANG00000031538) #34	YEATS2 (ENSPANG00000025622) #35
Macaca	ANCESTRAL SPECIES	5	ENSGT00390000013727.d #10	ENSGT00910000147799	ENSGT01000000214413.b.a.a #11	ENSGT00940000154863.db.d	ENSGT00940000156000.o.b	ENSGT00940000156305 #12	ENSGT00390000002837.m #13	ENSGT00390000009980 #14	ENSGT00940000157401 #15	ENSGT00910000147128	ENSGT00940000155931 #17	ENSGT00940000154639.n.a	ENSGT00390000013701 #19	ENSGT00390000015010 #20	ENSGT00940000154942.h.q.b	ENSGT00950000183189.a.b.a #22	ENSGT00940000154384.h.a ##23	ENSGT00940000160614 #24	ENSGT00910000147968	ENSGT00910000146924	ENSGT00940000156162.C.k #26	ENSGT00940000154552.b.g.a #27	ENSGT00940000156941 #28	ENSGT00940000164015 #29	ENSGT00940000161734 #32	ENSGT00940000159676 #31	ENSGT00940000154345.b #33	ENSGT00940000154345.a #34	ENSGT00940000156789 #35	ENSGT00910000147139	ENSGT00910000147149
Pig-tailed macaque	MODERN SPECIES	563													TTC14 (ENSMNEG00000044800) #19	CCDC39 (ENSMNEG00000033311) #20	ENSMNEG00000041132	FXR1 (ENSMNEG00000031733) #22	DNAJC19 (ENSMNEG00000037111) ##23	SOX2 (ENSMNEG00000026232) #24	ENSMNEG00000023089	ENSMNEG00000031959	ENSMNEG00000041253	ATP11B (ENSMNEG00000044870) #26	DCUN1D1 (ENSMNEG00000034646) #27	MCCC1 (ENSMNEG00000017163) #28	LAMP3 (ENSMNEG00000039831) #29	ENSMNEG00000023945	MCF2L2 (ENSMNEG00000028315) #32	B3GNT5 (ENSMNEG00000027097) #31	KLHL6 (ENSMNEG00000022023) #33	KLHL24 (ENSMNEG00000039455) #34	YEATS2 (ENSMNEG00000042931) #35
Macaca_a	ANCESTRAL SPECIES	5	ENSGT00940000155531.b	ENSGT00950000183039.B.a #7	ENSGT00940000156335.o #9	ENSGT00390000013727.d #10	ENSGT01000000214413.b.a.a #11	ENSGT00940000156000.o.b	ENSGT00940000156305 #12	ENSGT00390000002837.m #13	ENSGT00390000009980 #14	ENSGT00940000157401 #15	ENSGT00940000155931 #17	ENSGT01100000263509.a.a.b.b.a.b.a.a.a.a	ENSGT00390000013701 #19	ENSGT00390000015010 #20	ENSGT00940000154942.h.q.b	ENSGT00950000183189.a.b.a #22	ENSGT00940000154384.h.a ##23	ENSGT00940000160614 #24	ENSGT00910000146924	ENSGT00940000156162.C.k #26	ENSGT00940000154552.b.g.a #27	ENSGT00940000156941 #28	ENSGT00940000164015 #29	ENSGT00940000161734 #32	ENSGT00940000159676 #31	ENSGT00940000154345.b #33	ENSGT00940000156789 #35	ENSGT00530000063947.B #36	ENSGT00390000013063 #37	ENSGT00940000155470.b	ENSGT00940000156739.b.b.a
Crab-eating macaque	MODERN SPECIES	11	ZNF639 (ENSMFAG00000002403) #9	MFN1 (ENSMFAG00000003857) #10	GNB4 (ENSMFAG00000041470) #11	ENSMFAG00000030517	ENSMFAG00000065242	ENSMFAG00000054257	ACTL6A (ENSMFAG00000030153) #12	ENSMFAG00000053669 #13	NDUFB5 (ENSMFAG00000042220) #14	USP13 (ENSMFAG00000042834) #15	ENSMFAG00000061892	PEX5L (ENSMFAG00000036976) #17	ENSMFAG00000053927	TTC14 (ENSMFAG00000046249) #19	CCDC39 (ENSMFAG00000002267) #20	FXR1 (ENSMFAG00000040264) #22	DNAJC19 (ENSMFAG00000034041) ##23	ENSMFAG00000058781	SOX2 (ENSMFAG00000027781) #24	ENSMFAG00000003633	ATP11B (ENSMFAG00000035388) #26	MCCC1 (ENSMFAG00000000043) #28	LAMP3 (ENSMFAG00000042658) #29	ENSMFAG00000050998	MCF2L2 (ENSMFAG00000036484) #32	B3GNT5 (ENSMFAG00000011168) #31	ENSMFAG00000035316	YEATS2 (ENSMFAG00000045323) #35	MAP6D1 (ENSMFAG00000064027) #36	PARL (ENSMFAG00000036652) #37	ABCC5 (ENSMFAG00000038091)
Rhesus	MODERN SPECIES	11	KCNMB3 (ENSMMUG00000005187) #7	ZNF639 (ENSMMUG00000023078) #9	MFN1 (ENSMMUG00000004079) #10	GNB4 (ENSMMUG00000004083) #11	ENSMMUG00000054028	ACTL6A (ENSMMUG00000009742) #12	MRPL47 (ENSMMUG00000009744) #13	NDUFB5 (ENSMMUG00000009746) #14	USP13 (ENSMMUG00000003594) #15	PEX5L (ENSMMUG00000003595) #17	ENSMMUG00000050512	ENSMMUG00000049713	TTC14 (ENSMMUG00000019656) #19	CCDC39 (ENSMMUG00000045200) #20	ENSMMUG00000013353	FXR1 (ENSMMUG00000012105) #22	DNAJC19 (ENSMMUG00000012104) ##23	ENSMMUG00000063235	ENSMMUG00000057005	ENSMMUG00000047232	ENSMMUG00000018530	ATP11B (ENSMMUG00000019323) #26	DCUN1D1 (ENSMMUG00000010552) #27	MCCC1 (ENSMMUG00000010553) #28	LAMP3 (ENSMMUG00000010555) #29	ENSMMUG00000053420	MCF2L2 (ENSMMUG00000001456) #32	B3GNT5 (ENSMMUG00000031605) #31	KLHL6 (ENSMMUG00000022115) #33	YEATS2 (ENSMMUG00000008070) #35	ENSMMUG00000064298
Vervet Monkey	MODERN SPECIES	6	KCNMB2 (ENSCSAG00000012931) ##7	ZMAT3 (ENSCSAG00000012935)	PIK3CA (ENSCSAG00000012948)	KCNMB3 (ENSCSAG00000012962) #7	ZNF639 (ENSCSAG00000012977) #9	MFN1 (ENSCSAG00000012988) #10	GNB4 (ENSCSAG00000012993) #11	ACTL6A (ENSCSAG00000013017) #12	ENSCSAG00000013046 #13	NDUFB5 (ENSCSAG00000013080) #14	USP13 (ENSCSAG00000013094) #15	PEX5L (ENSCSAG00000013101) #17	TTC14 (ENSCSAG00000013105) #19	CCDC39 (ENSCSAG00000013137) #20	ENSCSAG00000013166	FXR1 (ENSCSAG00000013179) #22	DNAJC19 (ENSCSAG00000013183) ##23	SOX2 (ENSCSAG00000018883) #24	ATP11B (ENSCSAG00000013201) #26	DCUN1D1 (ENSCSAG00000013212) #27	MCCC1 (ENSCSAG00000013226) #28	ENSCSAG00000013232	B3GNT5 (ENSCSAG00000018882) #31	MCF2L2 (ENSCSAG00000013245) #32	KLHL6 (ENSCSAG00000013258) #33	KLHL24 (ENSCSAG00000013266) #34	YEATS2 (ENSCSAG00000013383) #35	MAP6D1 (ENSCSAG00000013437) #36	PARL (ENSCSAG00000013473) #37	ABCC5 (ENSCSAG00000013503)	HTR3D (ENSCSAG00000013515)
Hominoidea	ANCESTRAL SPECIES	2	ENSGT00950000183039.B.a #7	ENSGT00530000063564.b.e.b	ENSGT00940000156335 #9	ENSGT00390000013727.d #10	ENSGT01000000214413.b.a.a #11	ENSGT00940000154863.db.d	ENSGT00940000156305 #12	ENSGT00390000002837 #13	ENSGT00390000009980 #14	ENSGT00940000157401 #15	ENSGT00940000155931 #17	ENSGT00940000154639.n.a	ENSGT00390000013701 #19	ENSGT00390000015010 #20	ENSGT00940000154942.h.q.b	ENSGT00950000183189.a.b.a #22	ENSGT00940000154384.h.a ##23	ENSGT00940000160614 #24	ENSGT00910000146924	ENSGT00940000156162.C.k #26	ENSGT00940000154552.b.g.a #27	ENSGT00940000156941 #28	ENSGT00940000164015 #29	ENSGT00940000159676 #31	ENSGT00940000161734 #32	ENSGT00940000154345.b #33	ENSGT00940000154345.a #34	ENSGT00940000156789 #35	ENSGT00910000147149	ENSGT00530000063947.B #36	ENSGT00390000013063 #37
Hominidae	ANCESTRAL SPECIES	2	ENSGT00910000147422	ENSGT00950000183039.B.a #7	ENSGT00530000063564.b.e.b	ENSGT00940000156335 #9	ENSGT00390000013727.d #10	ENSGT01000000214413.b.a.a #11	ENSGT00940000154863.db.d	ENSGT00940000156305 #12	ENSGT00390000002837 #13	ENSGT00390000009980 #14	ENSGT00940000157401 #15	ENSGT00940000155931 #17	ENSGT00940000154639.n.a	ENSGT00390000013701 #19	ENSGT00390000015010 #20	ENSGT00950000183189.a.b.a #22	ENSGT00940000154384.h.a ##23	ENSGT00940000160614 #24	ENSGT00910000146924	ENSGT00940000156162.C.k #26	ENSGT00940000154552.b.g.a #27	ENSGT00940000156941 #28	ENSGT00940000164015 #29	ENSGT00940000159676 #31	ENSGT00940000161734 #32	ENSGT00940000154345.b #33	ENSGT00940000154345.a #34	ENSGT00940000156789 #35	ENSGT00910000147149	ENSGT00530000063947.B #36	ENSGT00390000013063 #37
Homo/Pan/Gorilla group	ANCESTRAL SPECIES	2	ENSGT00530000063564.b.e.b	ENSGT00940000156335 #9	ENSGT00390000013727.d #10	ENSGT01000000214413.b.a.a #11	ENSGT00940000154863.db.d	ENSGT00940000156305 #12	ENSGT00390000002837 #13	ENSGT00390000009980 #14	ENSGT00940000157401 #15	ENSGT00940000155931 #17	ENSGT00940000154639.n.a	ENSGT00390000013701 #19	ENSGT00390000015010 #20	ENSGT00940000154942.h.q.b	ENSGT00940000158890.q	ENSGT00950000183189.a.b.a #22	ENSGT00940000154384.h.a ##23	ENSGT00940000160614 #24	ENSGT00940000156162.C.k #26	ENSGT00940000154552.b.g.a #27	ENSGT00940000156941 #28	ENSGT00940000164015 #29	ENSGT00940000159676 #31	ENSGT00940000161734 #32	ENSGT00940000154345.b #33	ENSGT00940000154345.a #34	ENSGT00940000156789 #35	ENSGT00910000147149	ENSGT00530000063947.B #36	ENSGT00390000013063 #37	ENSGT00940000163497
Homo/Pan group	ANCESTRAL SPECIES	3	ENSGT00530000063564.b.e.b	ENSGT00940000156335 #9	ENSGT00390000013727.d #10	ENSGT01000000214413.b.a.a #11	ENSGT00940000154863.db.d	ENSGT00940000156305 #12	ENSGT00390000002837 #13	ENSGT00390000009980 #14	ENSGT00940000157401 #15	ENSGT00940000155931 #17	ENSGT00940000154639.n.a	ENSGT00390000013701 #19	ENSGT00390000015010 #20	ENSGT00940000154942.h.q.b	ENSGT00940000158890.q	ENSGT00950000183189.a.b.a #22	ENSGT00940000154384.h.a ##23	ENSGT00940000160614 #24	ENSGT00940000156162.C.k #26	ENSGT00940000154552.b.g.a #27	ENSGT00940000156941 #28	ENSGT00940000164015 #29	ENSGT00940000159676 #31	ENSGT00940000161734 #32	ENSGT00940000154345.b #33	ENSGT00940000154345.a #34	ENSGT00940000156789 #35	ENSGT00530000063947.B #36	ENSGT00390000013063 #37	ENSGT00940000163497	ENSGT00940000155470.b
Pan	ANCESTRAL SPECIES	2	ENSGT00530000063564.b.e.b	ENSGT00940000156335 #9	ENSGT00390000013727.d #10	ENSGT01000000214413.b.a.a #11	ENSGT00940000154863.db.d	ENSGT00940000156305 #12	ENSGT00390000002837 #13	ENSGT00390000009980 #14	ENSGT00940000157401 #15	ENSGT00940000155931 #17	ENSGT00940000154639.n.a	ENSGT00390000013701 #19	ENSGT00390000015010 #20	ENSGT00940000154942.h.q.b	ENSGT00940000158890.q	ENSGT00950000183189.a.b.a #22	ENSGT00940000154384.h.a ##23	ENSGT00910000147572	ENSGT00940000160614 #24	ENSGT00910000146924	ENSGT00940000156162.C.k #26	ENSGT00940000154552.b.g.a #27	ENSGT00940000156941 #28	ENSGT00940000164015 #29	ENSGT00940000159676 #31	ENSGT00940000161734 #32	ENSGT00940000154345.b #33	ENSGT00940000154345.a #34	ENSGT00940000156789 #35	ENSGT00530000063947.B #36	ENSGT00390000013063 #37
Chimpanzee	MODERN SPECIES	16	ENSPTRG00000051036	ZNF639 (ENSPTRG00000015644) #9	MFN1 (ENSPTRG00000015645) #10	GNB4 (ENSPTRG00000015646) #11	ENSPTRG00000050962	ACTL6A (ENSPTRG00000023973) #12	MRPL47 (ENSPTRG00000015648) #13	NDUFB5 (ENSPTRG00000015649) #14	USP13 (ENSPTRG00000015650) #15	PEX5L (ENSPTRG00000015651) #17	ENSPTRG00000049028	TTC14 (ENSPTRG00000015652) #19	CCDC39 (ENSPTRG00000015653) #20	ENSPTRG00000052129	ENSPTRG00000045151	ENSPTRG00000015656 #22	DNAJC19 (ENSPTRG00000030046) ##23	ENSPTRG00000047311	SOX2 (ENSPTRG00000030045) #24	ENSPTRG00000050568	ENSPTRG00000047631	ATP11B (ENSPTRG00000015660) #26	DCUN1D1 (ENSPTRG00000015661) #27	MCCC1 (ENSPTRG00000015662) #28	LAMP3 (ENSPTRG00000015663) #29	MCF2L2 (ENSPTRG00000015665) #32	B3GNT5 (ENSPTRG00000015666) #31	KLHL6 (ENSPTRG00000015667) #33	KLHL24 (ENSPTRG00000015669) #34	YEATS2 (ENSPTRG00000015670) #35	MAP6D1 (ENSPTRG00000015672) #36
Bonobo	MODERN SPECIES	16	ENSPPAG00000040290	ZNF639 (ENSPPAG00000031214) #9	MFN1 (ENSPPAG00000043805) #10	GNB4 (ENSPPAG00000043825) #11	ENSPPAG00000031844	ACTL6A (ENSPPAG00000031814) #12	MRPL47 (ENSPPAG00000028033) #13	NDUFB5 (ENSPPAG00000032519) #14	USP13 (ENSPPAG00000001256) #15	PEX5L (ENSPPAG00000036179) #17	ENSPPAG00000001167	TTC14 (ENSPPAG00000040361) #19	CCDC39 (ENSPPAG00000027438) #20	ENSPPAG00000015512	ENSPPAG00000043783	ENSPPAG00000037630 #22	DNAJC19 (ENSPPAG00000019978) ##23	ENSPPAG00000027884	SOX2 (ENSPPAG00000041083) #24	ENSPPAG00000036037	ENSPPAG00000039113	ATP11B (ENSPPAG00000039428) #26	DCUN1D1 (ENSPPAG00000029981) #27	MCCC1 (ENSPPAG00000036167) #28	LAMP3 (ENSPPAG00000027592) #29	MCF2L2 (ENSPPAG00000032914) #32	B3GNT5 (ENSPPAG00000000714) #31	KLHL6 (ENSPPAG00000028141) #33	KLHL24 (ENSPPAG00000034331) #34	YEATS2 (ENSPPAG00000015640) #35	PARL (ENSPPAG00000037739) #37
Human	MODERN SPECIES	15	KCNMB2 (ENSG00000197584) ##7	ENSG00000275163	ZMAT3 (ENSG00000172667)	PIK3CA (ENSG00000121879)	KCNMB3 (ENSG00000171121) #7	ZNF639 (ENSG00000121864) #9	MFN1 (ENSG00000171109) #10	GNB4 (ENSG00000114450) #11	ACTL6A (ENSG00000136518) #12	MRPL47 (ENSG00000136522) #13	NDUFB5 (ENSG00000136521) #14	USP13 (ENSG00000058056) #15	PEX5L (ENSG00000114757) #17	TTC14 (ENSG00000163728) #19	CCDC39 (ENSG00000284862) #20	FXR1 (ENSG00000114416) #22	DNAJC19 (ENSG00000205981) ##23	SOX2 (ENSG00000181449) #24	ATP11B (ENSG00000058063) #26	DCUN1D1 (ENSG00000043093) #27	MCCC1 (ENSG00000078070) #28	LAMP3 (ENSG00000078081) #29	MCF2L2 (ENSG00000053524) #32	B3GNT5 (ENSG00000176597) #31	KLHL6 (ENSG00000172578) #33	KLHL24 (ENSG00000114796) #34	YEATS2 (ENSG00000163872) #35	ENSG00000283765	MAP6D1 (ENSG00000180834) #36	PARL (ENSG00000175193) #37	ABCC5 (ENSG00000114770)
Gorilla	MODERN SPECIES	16	ENSGGOG00000041059	ZNF639 (ENSGGOG00000025664) #9	MFN1 (ENSGGOG00000009357) #10	GNB4 (ENSGGOG00000026248) #11	ENSGGOG00000002247	ACTL6A (ENSGGOG00000015710) #12	MRPL47 (ENSGGOG00000027171) #13	NDUFB5 (ENSGGOG00000005222) #14	USP13 (ENSGGOG00000034809) #15	PEX5L (ENSGGOG00000003000) #17	ENSGGOG00000043452	TTC14 (ENSGGOG00000003335) #19	CCDC39 (ENSGGOG00000034953) #20	ENSGGOG00000041279	ENSGGOG00000025632	ENSGGOG00000009957 #22	DNAJC19 (ENSGGOG00000009120) ##23	ENSGGOG00000040038	ENSGGOG00000013813	ENSGGOG00000037039	ENSGGOG00000022832	ATP11B (ENSGGOG00000023125) #26	DCUN1D1 (ENSGGOG00000010767) #27	MCCC1 (ENSGGOG00000002784) #28	LAMP3 (ENSGGOG00000005729) #29	MCF2L2 (ENSGGOG00000005734) #32	B3GNT5 (ENSGGOG00000038086) #31	KLHL6 (ENSGGOG00000010394) #33	KLHL24 (ENSGGOG00000028174) #34	YEATS2 (ENSGGOG00000003713) #35	ENSGGOG00000044009
Orangutan	MODERN SPECIES	16	ENSPPYG00000014315	PIK3CA (ENSPPYG00000025901)	ENSPPYG00000034294	KCNMB3 (ENSPPYG00000014316) #7	ZNF639 (ENSPPYG00000031916) #9	MFN1 (ENSPPYG00000014318) #10	GNB4 (ENSPPYG00000040073) #11	ENSPPYG00000040586	ACTL6A (ENSPPYG00000014320) #12	MRPL47 (ENSPPYG00000014321) #13	NDUFB5 (ENSPPYG00000037815) #14	USP13 (ENSPPYG00000014322) #15	PEX5L (ENSPPYG00000014323) #17	ENSPPYG00000014324 #19	CCDC39 (ENSPPYG00000014325) #20	FXR1 (ENSPPYG00000014327) #22	DNAJC19 (ENSPPYG00000014328) ##23	SOX2 (ENSPPYG00000014330) #24	ENSPPYG00000031318	ATP11B (ENSPPYG00000029655) #26	ENSPPYG00000029837 #27	MCCC1 (ENSPPYG00000014331) #28	LAMP3 (ENSPPYG00000014332) #29	MCF2L2 (ENSPPYG00000014333) #32	B3GNT5 (ENSPPYG00000032259) #31	KLHL6 (ENSPPYG00000029418) #33	KLHL24 (ENSPPYG00000014335) #34	YEATS2 (ENSPPYG00000014336) #35	MAP6D1 (ENSPPYG00000035906) #36	PARL (ENSPPYG00000014338) #37	ABCC5 (ENSPPYG00000014339)
Gibbon	DUPLICATION
Gibbon	MODERN SPECIES	1	ENSNLEG00000005735 #7	ENSNLEG00000031548	ZNF639 (ENSNLEG00000005744) #9	MFN1 (ENSNLEG00000005745) #10	GNB4 (ENSNLEG00000005751) #11	ENSNLEG00000035220	ACTL6A (ENSNLEG00000035913) #12	MRPL47 (ENSNLEG00000005831) #13	NDUFB5 (ENSNLEG00000034646) #14	USP13 (ENSNLEG00000005851) #15	PEX5L (ENSNLEG00000005874) #17	ENSNLEG00000030368	TTC14 (ENSNLEG00000005900) #19	CCDC39 (ENSNLEG00000005916) #20	ENSNLEG00000033880	FXR1 (ENSNLEG00000005928) #22	DNAJC19 (ENSNLEG00000033702) ##23	SOX2 (ENSNLEG00000018940) #24	ENSNLEG00000032218	ENSNLEG00000030225	ENSNLEG00000032897	ATP11B (ENSNLEG00000005959) #26	DCUN1D1 (ENSNLEG00000005983) #27	MCCC1 (ENSNLEG00000005989) #28	LAMP3 (ENSNLEG00000006034) #29	MCF2L2 (ENSNLEG00000006037) #32	B3GNT5 (ENSNLEG00000018942) #31	ENSNLEG00000006063	KLHL24 (ENSNLEG00000006066) #34	YEATS2 (ENSNLEG00000006070) #35	ENSNLEG00000034670
Gibbon	MODERN SPECIES	1	SLC38A2 (ENSNLEG00000017915)	SLC38A1 (ENSNLEG00000029941)	SCAF11 (ENSNLEG00000017918)	ARID2 (ENSNLEG00000017919)	ANO6 (ENSNLEG00000017920)	DBX2 (ENSNLEG00000017924)	NELL2 (ENSNLEG00000017926)	ENSNLEG00000031581	TMEM117 (ENSNLEG00000017929)	TWF1 (ENSNLEG00000017931)	IRAK4 (ENSNLEG00000017933)	PUS7L (ENSNLEG00000017934)	ADAMTS20 (ENSNLEG00000017936)	ENSNLEG00000028656	PRICKLE1 (ENSNLEG00000017938)	ENSNLEG00000031391 #22	ZCRB1 (ENSNLEG00000017944)	ENSNLEG00000027269	ENSNLEG00000017941	YAF2 (ENSNLEG00000017946)	GXYLT1 (ENSNLEG00000028842)	PDZRN4 (ENSNLEG00000017948)	CNTN1 (ENSNLEG00000017950)	LRRK2 (ENSNLEG00000017957)	SLC2A13 (ENSNLEG00000017960)	C12orf40 (ENSNLEG00000017961)	ABCD2 (ENSNLEG00000017963)	KIF21A (ENSNLEG00000017964)	CPNE8 (ENSNLEG00000030228)	ENSNLEG00000032571	ENSNLEG00000033997
Laurasiatheria	ANCESTRAL SPECIES	2	ENSGT00950000183039.B.b.a ##7	ENSGT00730000111202	ENSGT00940000155531.b	ENSGT00950000183039.B.a #7	ENSGT00940000156335 #9	ENSGT00390000013727.d #10	ENSGT01000000214413.b.a.a #11	ENSGT00940000156305 #12	ENSGT00390000002837 #13	ENSGT00390000009980 #14	ENSGT00940000157401 #15	ENSGT00910000147128	ENSGT00940000155931 #17	ENSGT00390000013701 #19	ENSGT00390000015010 #20	ENSGT00950000183189.a.b.a #22	ENSGT00940000154384.h.a ##23	ENSGT00940000160614 #24	ENSGT00940000156162.C.k #26	ENSGT00940000154552 #27	ENSGT00940000156941 #28	ENSGT00950000182899.C.a	ENSGT00940000161734 #32	ENSGT00940000159676 #31	ENSGT00990000203899	ENSGT00940000154345.b #33	ENSGT00940000154345.a #34	ENSGT00940000156789 #35	ENSGT00530000063947.B #36	ENSGT00390000013063 #37	ENSGT00940000163497
Eulipotyphla	ANCESTRAL SPECIES	2101																ENSGT00950000183189.a.b.a #22	ENSGT00940000154384.h.a ##23
Common shrew	MODERN SPECIES	1104																FXR1 (ENSSARG00000011976) #22	ENSSARG00000011992 ##23
Hedgehog	MODERN SPECIES	1621																FXR1 (ENSEEUG00000006823) #22	DNAJC19 (ENSEEUG00000006955) ##23
Laurasiatheria_a	ANCESTRAL SPECIES	3	ENSGT00950000183039.B.b.a ##7	ENSGT00730000111202	ENSGT00940000155531.b	ENSGT00950000183039.B.a #7	ENSGT00940000156335 #9	ENSGT00390000013727.d #10	ENSGT01000000214413.b.a.a #11	ENSGT00940000156305 #12	ENSGT00390000002837 #13	ENSGT00390000009980 #14	ENSGT00940000157401 #15	ENSGT00910000147128	ENSGT00940000155931 #17	ENSGT00390000013701 #19	ENSGT00390000015010 #20	ENSGT00950000183189.a.b.a #22	ENSGT00940000154384.h.a ##23	ENSGT00940000160614 #24	ENSGT00940000156162.C.k #26	ENSGT00940000154552 #27	ENSGT00940000156941 #28	ENSGT00950000182899.C.a	ENSGT00940000161734 #32	ENSGT00940000159676 #31	ENSGT00990000203899	ENSGT00940000154345.b #33	ENSGT00940000154345.a #34	ENSGT00940000156789 #35	ENSGT00530000063947.B #36	ENSGT00390000013063 #37	ENSGT00940000163497
Laurasiatheria_b	ANCESTRAL SPECIES	2	ENSGT00950000183039.B.b.a ##7	ENSGT00730000111202	ENSGT00940000155531.b	ENSGT00950000183039.B.a #7	ENSGT00940000156335 #9	ENSGT00390000013727.d #10	ENSGT01000000214413.b.a.a #11	ENSGT00940000156305 #12	ENSGT00390000002837 #13	ENSGT00390000009980 #14	ENSGT00940000157401 #15	ENSGT00910000147128	ENSGT00940000155931 #17	ENSGT00390000013701 #19	ENSGT00390000015010 #20	ENSGT00950000183189.a.b.a #22	ENSGT00940000154384.h.a ##23	ENSGT00940000160614 #24	ENSGT00940000156162.C.k #26	ENSGT00940000154552 #27	ENSGT00940000156941 #28	ENSGT00950000182899.C.a	ENSGT00940000161734 #32	ENSGT00940000159676 #31	ENSGT00940000154345.b #33	ENSGT00940000154345.a #34	ENSGT00940000156789 #35	ENSGT00530000063947.B #36	ENSGT00390000013063 #37	ENSGT00940000155470.b	ENSGT00940000156739.b.b.a
Laurasiatheria_c	ANCESTRAL SPECIES	2	ENSGT00950000183039.B.b.a ##7	ENSGT00730000111202	ENSGT00940000155531.b	ENSGT00950000183039.B.a #7	ENSGT00940000156335 #9	ENSGT00390000013727.d #10	ENSGT01000000214413.b.a.a #11	ENSGT00940000156305 #12	ENSGT00390000002837 #13	ENSGT00390000009980 #14	ENSGT00940000157401 #15	ENSGT00910000147128	ENSGT00940000155931 #17	ENSGT00390000013701 #19	ENSGT00390000015010 #20	ENSGT00950000183189.a.b.a #22	ENSGT00940000154384.h.a ##23	ENSGT00940000160614 #24	ENSGT00940000156162.C.k #26	ENSGT00940000154552 #27	ENSGT00940000156941 #28	ENSGT00950000182899.C.a	ENSGT00940000161734 #32	ENSGT00940000159676 #31	ENSGT00940000154345.b #33	ENSGT00940000154345.a #34	ENSGT00940000156789 #35	ENSGT00530000063947.B #36	ENSGT00390000013063 #37	ENSGT00940000155470.b	ENSGT00940000156739.b.b.a
Chiroptera	ANCESTRAL SPECIES	13	ENSGT00950000183039.B.b.a ##7	ENSGT00730000111202	ENSGT00940000155531.b	ENSGT00950000183039.B.a #7	ENSGT00940000156335 #9	ENSGT00390000013727.d #10	ENSGT01000000214413.b.a.a #11	ENSGT00940000156305 #12	ENSGT00390000002837 #13	ENSGT00390000009980 #14	ENSGT00940000157401 #15	ENSGT00910000147128	ENSGT00940000155931 #17	ENSGT00390000013701 #19	ENSGT00390000015010 #20	ENSGT00950000183189.a.b.a #22	ENSGT00940000154384.h.a ##23	ENSGT00940000160614 #24	ENSGT00940000156162.C.k #26	ENSGT00940000154552 #27	ENSGT00940000156941.h #28	ENSGT00950000182899.C.a	ENSGT00940000159676 #31	ENSGT00940000161734 #32	ENSGT00940000154345.b #33	ENSGT00940000154345.a #34	ENSGT00940000156789 #35	ENSGT00530000063947.B #36	ENSGT00390000013063 #37	ENSGT00940000155470.b	ENSGT00940000156739.b.b.a
Microchiroptera	ANCESTRAL SPECIES	11	ENSGT00950000183039.B.b.a ##7	ENSGT00730000111202	ENSGT00940000155531.b	ENSGT00950000183039.B.a #7	ENSGT00940000156335 #9	ENSGT00390000013727.d #10	ENSGT01000000214413.b.a.a #11	ENSGT00940000156305 #12	ENSGT00390000002837 #13	ENSGT00390000009980 #14	ENSGT00940000157401 #15	ENSGT00910000147128	ENSGT00940000155931 #17	ENSGT00390000013701 #19	ENSGT00390000015010 #20	ENSGT00950000183189.a.b.a #22	ENSGT00940000154384.h.a ##23	ENSGT00940000160614 #24	ENSGT00940000156162.C.k #26	ENSGT00940000154552 #27	ENSGT00940000156941.h #28	ENSGT00950000182899.C.a	ENSGT00940000159676 #31	ENSGT00940000161734 #32	ENSGT00940000154345.b #33	ENSGT00940000154345.a #34	ENSGT00940000156789 #35	ENSGT00530000063947.B #36	ENSGT00390000013063 #37	ENSGT00940000155470.b	ENSGT00940000156739.b.b.a
Microbat	MODERN SPECIES	951	KCNMB2 (ENSMLUG00000006514) ##7	ZMAT3 (ENSMLUG00000013074)	PIK3CA (ENSMLUG00000009229)	KCNMB3 (ENSMLUG00000009263) #7	ZNF639 (ENSMLUG00000007597) #9	MFN1 (ENSMLUG00000007603) #10	GNB4 (ENSMLUG00000007640) #11	ACTL6A (ENSMLUG00000024899) #12	MRPL47 (ENSMLUG00000000996) #13	NDUFB5 (ENSMLUG00000000999) #14	USP13 (ENSMLUG00000013714) #15	PEX5L (ENSMLUG00000011630) #17	ENSMLUG00000028182	TTC14 (ENSMLUG00000010448) #19	CCDC39 (ENSMLUG00000010487) #20	FXR1 (ENSMLUG00000006840) #22	ENSMLUG00000006865 ##23	SOX2 (ENSMLUG00000013015) #24	ENSMLUG00000006369	ATP11B (ENSMLUG00000000492) #26	DCUN1D1 (ENSMLUG00000012251) #27	MCCC1 (ENSMLUG00000012257) #28	LAMP3 (ENSMLUG00000012272) #29	B3GNT5 (ENSMLUG00000017017) #31	MCF2L2 (ENSMLUG00000017007) #32	KLHL6 (ENSMLUG00000005156) #33	KLHL24 (ENSMLUG00000005165) #34	YEATS2 (ENSMLUG00000004493) #35	ENSMLUG00000027253 #36	PARL (ENSMLUG00000004507) #37	ABCC5 (ENSMLUG00000010786)
Greater horseshoe bat	MODERN SPECIES	11	ZMAT3 (ENSRFEG00010000131)	ENSRFEG00010000122	PIK3CA (ENSRFEG00010021761)	ENSRFEG00010021748 #7	ZNF639 (ENSRFEG00010021744) #9	MFN1 (ENSRFEG00010021730) #10	GNB4 (ENSRFEG00010021722) #11	ACTL6A (ENSRFEG00010021704) #12	MRPL47 (ENSRFEG00010021687) #13	ENSRFEG00010021670 #14	USP13 (ENSRFEG00010021639) #15	ENSRFEG00010021630	PEX5L (ENSRFEG00010021467) #17	TTC14 (ENSRFEG00010021404) #19	CCDC39 (ENSRFEG00010021385) #20	FXR1 (ENSRFEG00010021302) #22	DNAJC19 (ENSRFEG00010021277) ##23	ENSRFEG00010021268	ENSRFEG00010021250	ENSRFEG00010021233	ATP11B (ENSRFEG00010021177) #26	DCUN1D1 (ENSRFEG00010021156) #27	ENSRFEG00010021147	MCCC1 (ENSRFEG00010021096) #28	ENSRFEG00010021072	B3GNT5 (ENSRFEG00010021062) #31	MCF2L2 (ENSRFEG00010021002) #32	ENSRFEG00010020947	KLHL24 (ENSRFEG00010020928) #34	ENSRFEG00010020902	YEATS2 (ENSRFEG00010020847) #35
Megabat	MODERN SPECIES	20																FXR1 (ENSPVAG00000002823) #22	DNAJC19 (ENSPVAG00000002826) ##23
Equus	ANCESTRAL SPECIES	19	ENSGT00940000153421.a.b	ENSGT00950000183039.B.b.a ##7	ENSGT00730000111202	ENSGT00940000155531.b	ENSGT00950000183039.B.a #7	ENSGT00940000156335 #9	ENSGT00390000013727.d #10	ENSGT01000000214413.b.a.a #11	ENSGT00940000156305 #12	ENSGT00390000002837 #13	ENSGT00390000009980 #14	ENSGT00940000157401 #15	ENSGT00940000155931 #17	ENSGT00390000013701 #19	ENSGT00390000015010 #20	ENSGT00950000183189.a.b.a #22	ENSGT00940000154384.h.a ##23	ENSGT00940000160614 #24	ENSGT00940000156162.C.k #26	ENSGT00940000154552 #27	ENSGT00940000156941 #28	ENSGT00950000182899.C.a	ENSGT00940000161734 #32	ENSGT00940000159676 #31	ENSGT00940000163715.a	ENSGT00940000154345.a #34	ENSGT00940000156789 #35	ENSGT00530000063947.B #36	ENSGT00390000013063 #37	ENSGT00940000155470.b	ENSGT00940000156739.b.b.a
Horse	MODERN SPECIES	10	KCNMB2 (ENSECAG00000009088) ##7	ZMAT3 (ENSECAG00000012784)	PIK3CA (ENSECAG00000015019)	KCNMB3 (ENSECAG00000014580) #7	ZNF639 (ENSECAG00000015691) #9	MFN1 (ENSECAG00000018551) #10	GNB4 (ENSECAG00000008196) #11	ACTL6A (ENSECAG00000013622) #12	MRPL47 (ENSECAG00000018545) #13	NDUFB5 (ENSECAG00000000682) #14	USP13 (ENSECAG00000004152) #15	PEX5L (ENSECAG00000006506) #17	ENSECAG00000057496	TTC14 (ENSECAG00000014616) #19	CCDC39 (ENSECAG00000021390) #20	FXR1 (ENSECAG00000007560) #22	ENSECAG00000034995	DNAJC19 (ENSECAG00000009331) ##23	ENSECAG00000051089	SOX2 (ENSECAG00000010653) #24	ATP11B (ENSECAG00000016912) #26	ENSECAG00000045511	DCUN1D1 (ENSECAG00000021365) #27	MCCC1 (ENSECAG00000008214) #28	LAMP3 (ENSECAG00000008113)	MCF2L2 (ENSECAG00000008905) #32	B3GNT5 (ENSECAG00000001863) #31	ENSECAG00000049566	KLHL6 (ENSECAG00000016531)	KLHL24 (ENSECAG00000021066) #34	YEATS2 (ENSECAG00000008585) #35
Donkey	MODERN SPECIES	25	TBL1XR1 (ENSEASG00005016897)	KCNMB2 (ENSEASG00005016891) ##7	ZMAT3 (ENSEASG00005016887)	PIK3CA (ENSEASG00005016884)	ENSEASG00005016880 #7	ZNF639 (ENSEASG00005016879) #9	MFN1 (ENSEASG00005016871) #10	GNB4 (ENSEASG00005016867) #11	ACTL6A (ENSEASG00005016862) #12	MRPL47 (ENSEASG00005016858) #13	NDUFB5 (ENSEASG00005016854) #14	USP13 (ENSEASG00005016850) #15	PEX5L (ENSEASG00005016845) #17	TTC14 (ENSEASG00005016838) #19	CCDC39 (ENSEASG00005016830) #20	FXR1 (ENSEASG00005016818) #22	DNAJC19 (ENSEASG00005016812) ##23	SOX2 (ENSEASG00005038258) #24	ATP11B (ENSEASG00005016115) #26	DCUN1D1 (ENSEASG00005016038) #27	MCCC1 (ENSEASG00005015339) #28	ENSEASG00005015308	MCF2L2 (ENSEASG00005015300) #32	B3GNT5 (ENSEASG00005038666) #31	ENSEASG00005028355	ENSEASG00005015289	KLHL24 (ENSEASG00005015287) #34	YEATS2 (ENSEASG00005015265) #35	MAP6D1 (ENSEASG00005026951) #36	PARL (ENSEASG00005015210) #37	ABCC5 (ENSEASG00005014831)
Carnivora	ANCESTRAL SPECIES	10	ENSGT00950000183039.B.b.a ##7	ENSGT00730000111202	ENSGT00940000155531.b	ENSGT00950000183039.B.a #7	ENSGT00940000156335 #9	ENSGT00390000013727.d #10	ENSGT01000000214413.b.a.a #11	ENSGT00940000156305 #12	ENSGT00390000002837 #13	ENSGT00390000009980 #14	ENSGT00940000157401 #15	ENSGT00910000147128	ENSGT00940000155931 #17	ENSGT00390000013701 #19	ENSGT00390000015010 #20	ENSGT00950000183189.a.b.a #22	ENSGT00940000154384.h.a ##23	ENSGT00940000160614 #24	ENSGT00940000164959	ENSGT00940000156162.C.k #26	ENSGT00940000154552 #27	ENSGT00940000156941 #28	ENSGT00940000164015 #29	ENSGT00940000159676 #31	ENSGT00990000203899	ENSGT00950000182899.C.a	ENSGT00940000161734 #32	ENSGT00940000154345.b #33	ENSGT00940000154345.a #34	ENSGT00940000156789 #35	ENSGT00530000063947.B #36
Caniformia	ANCESTRAL SPECIES		ENSGT00950000183039.B.b.a ##7	ENSGT00730000111202	ENSGT00940000155531.b	ENSGT00950000183039.B.a #7	ENSGT00940000156335 #9	ENSGT00390000013727.d #10	ENSGT01000000214413.b.a.a #11	ENSGT00940000156305 #12	ENSGT00390000002837 #13	ENSGT00390000009980 #14	ENSGT00940000157401 #15	ENSGT00960000193213	ENSGT00940000155931 #17	ENSGT00390000013701 #19	ENSGT00390000015010 #20	ENSGT00950000183189.a.b.a #22	ENSGT00940000154384.h.a ##23	ENSGT00940000160614 #24	ENSGT00940000164959	ENSGT00940000156162.C.k #26	ENSGT00940000154552 #27	ENSGT00940000156941 #28	ENSGT00940000164015 #29	ENSGT00940000159676 #31	ENSGT00990000203899	ENSGT00950000182899.C.a	ENSGT00940000161734 #32	ENSGT00940000154345.b #33	ENSGT00390000006548.b.j.b	ENSGT00940000154345.a #34	ENSGT00940000156789 #35
Caniformia_b	ANCESTRAL SPECIES		ENSGT00950000183039.B.b.a ##7	ENSGT00730000111202	ENSGT00940000155531.b	ENSGT00950000183039.B.a #7	ENSGT00940000156335 #9	ENSGT00390000013727.d #10	ENSGT01000000214413.b.a.a #11	ENSGT00940000156305 #12	ENSGT00390000002837 #13	ENSGT00390000009980.z #14	ENSGT00940000157401 #15	ENSGT00960000193213	ENSGT00940000155931 #17	ENSGT00390000013701 #19	ENSGT00390000015010 #20	ENSGT00950000183189.a.b.a #22	ENSGT00940000154384.h.a ##23	ENSGT00940000160614 #24	ENSGT00940000164959	ENSGT00940000156162.C.k #26	ENSGT00940000154552 #27	ENSGT00940000156941 #28	ENSGT00940000164015 #29	ENSGT00940000159676 #31	ENSGT00990000203899	ENSGT00940000161734 #32	ENSGT00940000154345.b #33	ENSGT00390000006548.b.j.b	ENSGT00940000154345.a #34	ENSGT00940000156789 #35	ENSGT00530000063947.B #36
Ursidae	ANCESTRAL SPECIES	1	ENSGT00950000185097.a	ENSGT00950000183039.B.b.a ##7	ENSGT00730000111202	ENSGT00940000155531.b	ENSGT00950000183039.B.a #7	ENSGT00940000156335 #9	ENSGT00390000013727.d #10	ENSGT01000000214413.b.a.a #11	ENSGT00940000156305 #12	ENSGT00390000002837 #13	ENSGT00390000009980.z #14	ENSGT00940000157401 #15	ENSGT00940000155931 #17	ENSGT00390000013701 #19	ENSGT00390000015010 #20	ENSGT00950000183189.a.b.a #22	ENSGT00940000154384.h.a ##23	ENSGT00940000160614 #24	ENSGT00940000156162.C.k #26	ENSGT00940000154552 #27	ENSGT00940000156941 #28	ENSGT00940000164015 #29	ENSGT00940000159676 #31	ENSGT00990000203899	ENSGT00940000161734 #32	ENSGT00940000154345.b #33	ENSGT00940000154345.a #34	ENSGT00940000156789 #35	ENSGT00530000063947.B #36	ENSGT00390000013063 #37	ENSGT00940000155470.b.kb
Ursus	ANCESTRAL SPECIES	22	ENSGT00950000185097.a	ENSGT00950000183039.B.b.a ##7	ENSGT00730000111202	ENSGT00940000155531.b	ENSGT00950000183039.B.a #7	ENSGT00940000156335 #9	ENSGT00390000013727.d #10	ENSGT01000000214413.b.a.a #11	ENSGT00940000156305 #12	ENSGT00390000002837 #13	ENSGT00390000009980.z #14	ENSGT00940000157401 #15	ENSGT00940000155931 #17	ENSGT00390000013701 #19	ENSGT00390000015010 #20	ENSGT00950000183189.a.b.a #22	ENSGT00940000154384.h.a ##23	ENSGT00940000160614 #24	ENSGT00940000156162.C.k #26	ENSGT00940000154552 #27	ENSGT00940000156941 #28	ENSGT00940000164015 #29	ENSGT00940000159676 #31	ENSGT00990000203899	ENSGT00940000161734 #32	ENSGT00940000154345.b #33	ENSGT00940000154345.a #34	ENSGT00940000156789 #35	ENSGT00530000063947.B #36	ENSGT00390000013063 #37	ENSGT00940000155470.b.kb
Polar bear	MODERN SPECIES	270	KCNMB2 (ENSUMAG00000007875) ##7	ZMAT3 (ENSUMAG00000007847)	PIK3CA (ENSUMAG00000007616)	KCNMB3 (ENSUMAG00000007593) #7	ZNF639 (ENSUMAG00000007588) #9	MFN1 (ENSUMAG00000007570) #10	GNB4 (ENSUMAG00000007558) #11	ACTL6A (ENSUMAG00000007556) #12	MRPL47 (ENSUMAG00000007554) #13	NDUFB5 (ENSUMAG00000007550) #14	USP13 (ENSUMAG00000007534) #15	PEX5L (ENSUMAG00000007206) #17	ENSUMAG00000007106 #19	ENSUMAG00000007101 #19	CCDC39 (ENSUMAG00000007079) #20	FXR1 (ENSUMAG00000007061) #22	ENSUMAG00000007051 ##23	SOX2 (ENSUMAG00000007022) #24	ATP11B (ENSUMAG00000006982) #26	DCUN1D1 (ENSUMAG00000006934) #27	MCCC1 (ENSUMAG00000006927) #28	LAMP3 (ENSUMAG00000006918) #29	B3GNT5 (ENSUMAG00000006915) #31	ENSUMAG00000006910	MCF2L2 (ENSUMAG00000006845) #32	KLHL6 (ENSUMAG00000006797) #33	KLHL24 (ENSUMAG00000006792) #34	YEATS2 (ENSUMAG00000006587) #35	PARL (ENSUMAG00000006500) #37	ENSUMAG00000006485	ENSUMAG00000006482
American black bear	MODERN SPECIES	2951																FXR1 (ENSUAMG00000006833) #22	DNAJC19 (ENSUAMG00000006832) ##23
Giant Panda	MODERN SPECIES		ENSAMEG00000028254	KCNMB2 (ENSAMEG00000010737) ##7	ZMAT3 (ENSAMEG00000010742)	PIK3CA (ENSAMEG00000010753)	KCNMB3 (ENSAMEG00000010807) #7	ZNF639 (ENSAMEG00000010809) #9	MFN1 (ENSAMEG00000010816) #10	GNB4 (ENSAMEG00000010842) #11	ACTL6A (ENSAMEG00000010856) #12	MRPL47 (ENSAMEG00000010876) #13	NDUFB5 (ENSAMEG00000023963) #14	USP13 (ENSAMEG00000010896) #15	PEX5L (ENSAMEG00000010981) #17	TTC14 (ENSAMEG00000011013) #19	CCDC39 (ENSAMEG00000011032) #20	FXR1 (ENSAMEG00000012185) #22	ENSAMEG00000029101	Sox2 (ENSAMEG00000011029) #24	ATP11B (ENSAMEG00000015884) #26	DCUN1D1 (ENSAMEG00000015937) #27	MCCC1 (ENSAMEG00000015967) #28	LAMP3 (ENSAMEG00000015997) #29	B3GNT5 (ENSAMEG00000019887) #31	KLHL6 (ENSAMEG00000017427) #32	KLHL24 (ENSAMEG00000017409) #34	YEATS2 (ENSAMEG00000017390) #35	MAP6D1 (ENSAMEG00000017388) #36	PARL (ENSAMEG00000017375) #37	ABCC5 (ENSAMEG00000017331)	ENSAMEG00000017325	ENSAMEG00000028286
Mustelinae	ANCESTRAL SPECIES	20	ENSGT00950000183039.B.b.a ##7	ENSGT00730000111202	ENSGT00940000155531.b	ENSGT00950000183039.B.a #7	ENSGT00940000156335 #9	ENSGT00390000013727.d #10	ENSGT01000000214413.b.a.a #11	ENSGT00940000156305 #12	ENSGT00390000002837 #13	ENSGT00390000009980.z #14	ENSGT00940000157401 #15	ENSGT00960000193213	ENSGT00940000155931 #17	ENSGT00390000013701 #19	ENSGT00390000015010 #20	ENSGT00950000183189.a.b.a #22	ENSGT00940000154384.h.a ##23	ENSGT00940000154502.`b.b.b	ENSGT00940000160614 #24	ENSGT00940000164959	ENSGT00940000156162.C.k #26	ENSGT00940000154552 #27	ENSGT00940000156941 #28	ENSGT00940000164015 #29	ENSGT00940000161734 #32	ENSGT00940000159676 #31	ENSGT00940000154345.b #33	ENSGT00390000006548.b.j.b	ENSGT00940000154345.a #34	ENSGT00940000156789 #35	ENSGT00530000063947.B #36
Ferret	MODERN SPECIES	176														TTC14 (ENSMPUG00000002322) #19	CCDC39 (ENSMPUG00000002324) #20	FXR1 (ENSMPUG00000002333) #22	DNAJC19 (ENSMPUG00000002336) ##23	ENSMPUG00000002351	ATP11B (ENSMPUG00000002361) #26	DCUN1D1 (ENSMPUG00000002369) #27	MCCC1 (ENSMPUG00000002371) #28	LAMP3 (ENSMPUG00000002377) #29	MCF2L2 (ENSMPUG00000002378) #32	B3GNT5 (ENSMPUG00000019270) #31	KLHL6 (ENSMPUG00000002389) #33	KLHL24 (ENSMPUG00000002390) #34	ENSMPUG00000019273	YEATS2 (ENSMPUG00000002394) #35	MAP6D1 (ENSMPUG00000002396) #36	PARL (ENSMPUG00000002398) #37	ABCC5 (ENSMPUG00000002400)
American mink	MODERN SPECIES	118		ZMAT3 (ENSNVIG00000018146)	PIK3CA (ENSNVIG00000018130)	KCNMB3 (ENSNVIG00000018086) #7	ZNF639 (ENSNVIG00000018071) #9	MFN1 (ENSNVIG00000018002) #10	GNB4 (ENSNVIG00000017705) #11	ACTL6A (ENSNVIG00000017593) #12	MRPL47 (ENSNVIG00000017553) #13	NDUFB5 (ENSNVIG00000017522) #14	USP13 (ENSNVIG00000017445) #15	ENSNVIG00000017429	E9PH97 (ENSNVIG00000016959) #17	TTC14 (ENSNVIG00000016897) #19	CCDC39 (ENSNVIG00000016850) #20	FXR1 (ENSNVIG00000016628) #22	ENSNVIG00000016582 ##23	ENSNVIG00000016571	SOX2 (ENSNVIG00000016538) #24	ENSNVIG00000016527	ATP11B (ENSNVIG00000016435) #26	DCUN1D1 (ENSNVIG00000016385) #27	MCCA (ENSNVIG00000016260) #28	LAMP3 (ENSNVIG00000016242) #29	B3GNT5 (ENSNVIG00000016238) #31	ENSNVIG00000016235	MF2L2 (ENSNVIG00000016107) #32	KLHL6 (ENSNVIG00000016052) #33	ENSNVIG00000016043	KLH24 (ENSNVIG00000016026) #34	YEATS2 (ENSNVIG00000015940) #35
Canidae	ANCESTRAL SPECIES	43		ENSGT00730000111202	ENSGT00940000155531.b	ENSGT00950000183039.B.a #7	ENSGT00940000156335 #9	ENSGT00390000013727.d #10	ENSGT01000000214413.b.a.a #11	ENSGT00940000156305 #12	ENSGT00390000002837 #13	ENSGT00390000009980.w #14	ENSGT00940000157401 #15	ENSGT00960000193213	ENSGT00940000155931 #17	ENSGT00390000013701 #19	ENSGT00390000015010 #20	ENSGT00950000183189.a.b.a #22	ENSGT00940000154384.h.a ##23	ENSGT00940000160614 #24	ENSGT00940000164959	ENSGT00940000156162.C.k #26	ENSGT00940000154552 #27	ENSGT00940000156941 #28	ENSGT00950000182899.C.a	ENSGT00940000161734 #32	ENSGT00940000159676 #31	ENSGT00940000154345.b #33	ENSGT00390000006548.b.j.b	ENSGT00940000154345.a #34	ENSGT00940000156789 #35	ENSGT00530000063947.B #36	ENSGT00390000013063 #37
Canis_lupus	ANCESTRAL SPECIES	41		ENSGT00730000111202	ENSGT00940000155531.b	ENSGT00950000183039.B.a #7	ENSGT00940000156335 #9	ENSGT00390000013727.d #10	ENSGT01000000214413.b.a.a #11	ENSGT00940000156305 #12	ENSGT00390000002837 #13	ENSGT00390000009980.w #14	ENSGT00940000157401 #15	ENSGT00960000193213	ENSGT00940000155931 #17	ENSGT00390000013701 #19	ENSGT00390000015010 #20	ENSGT00950000183189.a.b.a #22	ENSGT00940000154384.h.a ##23	ENSGT00940000160614 #24	ENSGT00940000156162.C.k #26	ENSGT00940000154552 #27	ENSGT00940000156941 #28	ENSGT00950000182899.C.a	ENSGT00940000161734 #32	ENSGT00940000159676 #31	ENSGT00940000154345.b #33	ENSGT00390000006548.b.j.b	ENSGT00940000154345.a #34	ENSGT00940000156789 #35	ENSGT00530000063947.B #36	ENSGT00390000013063 #37	ENSGT00940000155470.b
Dog	MODERN SPECIES	27	ENSCAFG00845015451	ENSCAFG00845015500	ENSCAFG00845015527	PIK3CA (ENSCAFG00845015587)	KCNMB3 (ENSCAFG00845015706) #7	ZNF639 (ENSCAFG00845015781) #9	MFN1 (ENSCAFG00845015841) #10	GNB4 (ENSCAFG00845016005) #11	ACTL6A (ENSCAFG00845016262) #12	MRPL47 (ENSCAFG00845016380) #13	NDUFB5 (ENSCAFG00845016589) #14	USP13 (ENSCAFG00845016860) #15	PEX5L (ENSCAFG00845017545) #17	TTC14 (ENSCAFG00845018663) #19	CCDC39 (ENSCAFG00845018860) #20	FXR1 (ENSCAFG00845019374) #22	DNAJC19 (ENSCAFG00845020070) ##23	ATP11B (ENSCAFG00845020449) #26	DCUN1D1 (ENSCAFG00845021251) #27	MCCC1 (ENSCAFG00845021386) #28	ENSCAFG00845021628	MCF2L2 (ENSCAFG00845021833) #32	KLHL6 (ENSCAFG00845022563) #33	ENSCAFG00845022671	KLHL24 (ENSCAFG00845022711) #34	YEATS2 (ENSCAFG00845023023) #35	ENSCAFG00845023901	MAP6D1 (ENSCAFG00845023943) #36	PARL (ENSCAFG00845024017) #37	ABCC5 (ENSCAFG00845024339)	ENSCAFG00845025304
Dingo	MODERN SPECIES	159	PIK3CA (ENSCAFG00020023109)	KCNMB3 (ENSCAFG00020023112) #7	ZNF639 (ENSCAFG00020023113) #9	MFN1 (ENSCAFG00020023114) #10	GNB4 (ENSCAFG00020023115) #11	ACTL6A (ENSCAFG00020023126) #12	MRPL47 (ENSCAFG00020023127) #13	ENSCAFG00020023129 #14	ENSCAFG00020023130	ENSCAFG00020023131	USP13 (ENSCAFG00020023133) #15	ENSCAFG00020023137	PEX5L (ENSCAFG00020023148) #17	TTC14 (ENSCAFG00020023505) #19	CCDC39 (ENSCAFG00020023514) #20	FXR1 (ENSCAFG00020023527) #22	ENSCAFG00020023532 ##23	SOX2 (ENSCAFG00020023541) #24	ENSCAFG00020023545	ATP11B (ENSCAFG00020000213) #26	DCUN1D1 (ENSCAFG00020000986) #27	MCCC1 (ENSCAFG00020001000) #28	ENSCAFG00020001021	MCF2L2 (ENSCAFG00020001083) #32	B3GNT5 (ENSCAFG00020001231) #31	KLHL6 (ENSCAFG00020001252) #33	ENSCAFG00020001264	KLHL24 (ENSCAFG00020001271) #34	YEATS2 (ENSCAFG00020001349) #35	MAP6D1 (ENSCAFG00020002085) #36	PARL (ENSCAFG00020002113) #37
Red fox	MODERN SPECIES	63		ZMAT3 (ENSVVUG00000004729)	PIK3CA (ENSVVUG00000004738)	KCNMB3 (ENSVVUG00000004756) #7	ZNF639 (ENSVVUG00000004762) #9	MFN1 (ENSVVUG00000004780) #10	GNB4 (ENSVVUG00000004802) #11	ACTL6A (ENSVVUG00000004812) #12	MRPL47 (ENSVVUG00000004837) #13	NDUFB5 (ENSVVUG00000004849) #14	USP13 (ENSVVUG00000004881) #15	PEX5L (ENSVVUG00000004951) #17	TTC14 (ENSVVUG00000006305) #19	CCDC39 (ENSVVUG00000006637) #20	ENSVVUG00000006654	FXR1 (ENSVVUG00000006660) #22	DNAJC19 (ENSVVUG00000006684) ##23	ENSVVUG00000006699	ENSVVUG00000006706	SOX2 (ENSVVUG00000006730) #24	ENSVVUG00000006736	ATP11B (ENSVVUG00000006763) #26	DCUN1D1 (ENSVVUG00000006826) #27	MCCC1 (ENSVVUG00000006835) #28	ENSVVUG00000006851	MCF2L2 (ENSVVUG00000006872) #32	B3GNT5 (ENSVVUG00000006884) #31	KLHL6 (ENSVVUG00000006905) #33	ENSVVUG00000006913	KLHL24 (ENSVVUG00000006919) #34	YEATS2 (ENSVVUG00000006927) #35
Felidae	ANCESTRAL SPECIES	9	ENSGT00730000111202	ENSGT00940000155531.b	ENSGT00950000183039.B.a #7	ENSGT00940000156335 #9	ENSGT00390000013727.d #10	ENSGT01000000214413.b.a.a #11	ENSGT00940000156305 #12	ENSGT00390000002837 #13	ENSGT00390000009980 #14	ENSGT00940000157401 #15	ENSGT00910000147128	ENSGT00940000155931 #17	ENSGT00390000013701 #19	ENSGT00390000015010 #20	ENSGT00940000172992	ENSGT00950000183189.a.b.a #22	ENSGT00940000154384.h.a ##23	ENSGT00940000160614 #24	ENSGT00940000164959	ENSGT00940000156162.C.k #26	ENSGT00940000154552 #27	ENSGT00940000156941 #28	ENSGT00940000164015 #29	ENSGT00940000159676 #31	ENSGT00940000161734 #32	ENSGT00940000154345.b #33	ENSGT00940000154345.a #34	ENSGT00940000156789 #35	ENSGT00530000063947.B #36	ENSGT00390000013063 #37	ENSGT00940000155470.b
Panthera	ANCESTRAL SPECIES	12	ENSGT00730000111202	ENSGT00940000155531.b	ENSGT00950000183039.B.a #7	ENSGT00940000156335 #9	ENSGT00390000013727.d #10	ENSGT01000000214413.b.a.a #11	ENSGT00940000156305 #12	ENSGT00390000002837 #13	ENSGT00390000009980 #14	ENSGT00940000157401 #15	ENSGT00910000147128	ENSGT00940000155931 #17	ENSGT00390000013701 #19	ENSGT00390000015010 #20	ENSGT00940000172992	ENSGT00950000183189.a.b.a #22	ENSGT00940000154384.h.a ##23	ENSGT00940000160614 #24	ENSGT00940000164959	ENSGT00940000156162.C.k #26	ENSGT00940000154552 #27	ENSGT00940000156941 #28	ENSGT00940000164015 #29	ENSGT00940000159676 #31	ENSGT00940000161734 #32	ENSGT00940000154345.b #33	ENSGT00940000154345.a #34	ENSGT00940000156789 #35	ENSGT00530000063947.B #36	ENSGT00390000013063 #37	ENSGT00940000155470.b
Tiger	MODERN SPECIES	474	ZMAT3 (ENSPTIG00000009929)	PIK3CA (ENSPTIG00000009726)	KCNMB3 (ENSPTIG00000009324) #7	ZNF639 (ENSPTIG00000009164) #9	MFN1 (ENSPTIG00000008839) #10	GNB4 (ENSPTIG00000008698) #11	ENSPTIG00000008626	ACTL6A (ENSPTIG00000008261) #12	MRPL47 (ENSPTIG00000007879) #13	NDUFB5 (ENSPTIG00000007631) #14	USP13 (ENSPTIG00000007161) #15	ENSPTIG00000009433	PEX5L (ENSPTIG00000004084) #17	TTC14 (ENSPTIG00000001841) #19	CCDC39 (ENSPTIG00000001676) #20	FXR1 (ENSPTIG00000019748) #22	DNAJC19 (ENSPTIG00000019574) ##23	ENSPTIG00000019532	ATP11B (ENSPTIG00000018956) #26	DCUN1D1 (ENSPTIG00000018800) #27	MCCC1 (ENSPTIG00000018514) #28	LAMP3 (ENSPTIG00000018429) #29	B3GNT5 (ENSPTIG00000009347) #31	MCF2L2 (ENSPTIG00000018188) #32	ENSPTIG00000018091
Panthera_a	ANCESTRAL SPECIES	17	ENSGT00940000155531.b	ENSGT00950000183039.B.a #7	ENSGT00940000156335 #9	ENSGT00390000013727.d #10	ENSGT01000000214413.b.a.a #11	ENSGT00940000156305 #12	ENSGT00390000002837 #13	ENSGT00950000182802.B.a.a.a.b.a.b	ENSGT00390000009980 #14	ENSGT00940000157401 #15	ENSGT00910000147128	ENSGT00940000155931 #17	ENSGT00390000013701 #19	ENSGT00390000015010 #20	ENSGT00940000172992	ENSGT00950000183189.a.b.a #22	ENSGT00940000154384.h.a ##23	ENSGT00940000160614 #24	ENSGT00940000164959	ENSGT00940000156162.C.k #26	ENSGT00940000154552 #27	ENSGT00940000156941 #28	ENSGT00940000164015 #29	ENSGT00940000161734 #32	ENSGT00940000159676 #31	ENSGT00940000153305.c.f.a
leopard	MODERN SPECIES	41	ZNF639 (ENSPPRG00000002569) #9	MFN1 (ENSPPRG00000001517) #10	GNB4 (ENSPPRG00000001295) #11	ENSPPRG00000022425	ACTL6A (ENSPPRG00000000310) #12	MRPL47 (ENSPPRG00000000050) #13	ENSPPRG00000022339	NDUFB5 (ENSPPRG00000023717) #14	USP13 (ENSPPRG00000023982) #15	ENSPPRG00000022239	PEX5L (ENSPPRG00000012577) #17	ENSPPRG00000006521	TTC14 (ENSPPRG00000006127) #19	CCDC39 (ENSPPRG00000005599) #20	ENSPPRG00000005376	FXR1 (ENSPPRG00000004943) #22	DNAJC19 (ENSPPRG00000002612) ##23	SOX2 (ENSPPRG00000021752) #24	ENSPPRG00000002170	ENSPPRG00000001643	ATP11B (ENSPPRG00000001539) #26	DCUN1D1 (ENSPPRG00000000834) #27	MCCC1 (ENSPPRG00000000127) #28	LAMP3 (ENSPPRG00000023853) #29	MCF2L2 (ENSPPRG00000024122) #32	B3GNT5 (ENSPPRG00000021466) #31	ENSPPRG00000013180	KLHL6 (ENSPPRG00000011045) #33	KLHL24 (ENSPPRG00000011024) #34	YEATS2 (ENSPPRG00000010510) #35	MAP6D1 (ENSPPRG00000010302) #36
lion	DUPLICATION
lion	MODERN SPECIES	9	KCNMB2 (ENSPLOG00000014199) ##7	ZMAT3 (ENSPLOG00000014350)	PIK3CA (ENSPLOG00000014416)	KCNMB3 (ENSPLOG00000014563) #7	ZNF639 (ENSPLOG00000014743) #9	MFN1 (ENSPLOG00000014785) #10	GNB4 (ENSPLOG00000014871) #11	ACTL6A (ENSPLOG00000014922) #12	MRPL47 (ENSPLOG00000015006) #13	ENSPLOG00000015221	NDUFB5 (ENSPLOG00000015246) #14	USP13 (ENSPLOG00000015359) #15	PEX5L (ENSPLOG00000015604) #17	TTC14 (ENSPLOG00000016608) #19	CCDC39 (ENSPLOG00000016889) #20	ENSPLOG00000017262 #22	DNAJC19 (ENSPLOG00000017942) ##23	SOX2 (ENSPLOG00000018057) #24	ENSPLOG00000018071	ATP11B (ENSPLOG00000018137) #26	DCUN1D1 (ENSPLOG00000018397) #27	MCCC1 (ENSPLOG00000018464) #28	LAMP3 (ENSPLOG00000018830) #29	MCF2L2 (ENSPLOG00000018925) #32	B3GNT5 (ENSPLOG00000019335) #31	ENSPLOG00000019346	MB21D2 (ENSPLOG00000019380)	FGF12 (ENSPLOG00000019425)	ENSPLOG00000019518	CCDC50 (ENSPLOG00000019549)	UTS2B (ENSPLOG00000019582)
lion	MODERN SPECIES	8	DLX1 (ENSPLOG00000022582)	DLX2 (ENSPLOG00000022579)	ITGA6 (ENSPLOG00000022569)	PDK1 (ENSPLOG00000022560)	RAPGEF4 (ENSPLOG00000022513)	ENSPLOG00000022477	CDCA7 (ENSPLOG00000022466)	SP3 (ENSPLOG00000022461)	ENSPLOG00000022450	SP9 (ENSPLOG00000022443)	ENSPLOG00000022440	CIR1 (ENSPLOG00000022436)	SCRN3 (ENSPLOG00000022426)	GPR155 (ENSPLOG00000022420)	ENSPLOG00000022404	ENSPLOG00000022399 #22	WIPF1 (ENSPLOG00000022385)	CHRNA1 (ENSPLOG00000022353)	CHN1 (ENSPLOG00000022311)	ATF2 (ENSPLOG00000022276)	ATP5MC3 (ENSPLOG00000022249)	LNPK (ENSPLOG00000022229)	EVX2 (ENSPLOG00000022219)	HOXD13 (ENSPLOG00000022213)	HOXD12 (ENSPLOG00000022207)	HOXD11 (ENSPLOG00000022202)	HOXD10 (ENSPLOG00000022198)	HOXD9 (ENSPLOG00000022195)	HOXD8 (ENSPLOG00000022192)	HOXD4 (ENSPLOG00000022180)	HOXD3 (ENSPLOG00000022176)
Cat	MODERN SPECIES	240	KCNMB2 (ENSFCAG00000006044) ##7	ZMAT3 (ENSFCAG00000014578)	PIK3CA (ENSFCAG00000018737)	KCNMB3 (ENSFCAG00000041547) #7	ZNF639 (ENSFCAG00000012004) #9	MFN1 (ENSFCAG00000028181) #10	GNB4 (ENSFCAG00000039564) #11	ACTL6A (ENSFCAG00000012364) #12	MRPL47 (ENSFCAG00000039093) #13	NDUFB5 (ENSFCAG00000012365) #14	USP13 (ENSFCAG00000025086) #15	PEX5L (ENSFCAG00000012367) #17	TTC14 (ENSFCAG00000027763) #19	CCDC39 (ENSFCAG00000029319) #20	ENSFCAG00000035458	FXR1 (ENSFCAG00000022259) #22	ENSFCAG00000010591 #23	ENSFCAG00000043744	ENSFCAG00000039424	ATP11B (ENSFCAG00000026272) #26	DCUN1D1 (ENSFCAG00000032259) #27	MCCC1 (ENSFCAG00000000940) #28	LAMP3 (ENSFCAG00000028212) #29	B3GNT5 (ENSFCAG00000022706) #31	ENSFCAG00000029159	MCF2L2 (ENSFCAG00000014298) #32	ENSFCAG00000025637	KLHL6 (ENSFCAG00000015088) #33	KLHL24 (ENSFCAG00000025721) #34	YEATS2 (ENSFCAG00000003117) #35	MAP6D1 (ENSFCAG00000044280) #36
Artiodactyla	ANCESTRAL SPECIES	2	ENSGT00950000183039.B.b.a ##7	ENSGT00730000111202	ENSGT00940000155531.b	ENSGT00950000183039.B.a #7	ENSGT00940000156335 #9	ENSGT00390000013727.d #10	ENSGT01000000214413.b.a.a #11	ENSGT00940000156305 #12	ENSGT00390000002837 #13	ENSGT00390000009980 #14	ENSGT00940000157401 #15	ENSGT00910000147128	ENSGT00940000155931 #17	ENSGT00390000013701 #19	ENSGT00390000015010 #20	ENSGT00950000183189.a.b.a #22	ENSGT00940000154384.g ##23	ENSGT00940000160614 #24	ENSGT00940000156162.C.k #26	ENSGT00940000154552 #27	ENSGT00940000156941 #28	ENSGT00950000182899.C.a	ENSGT00940000161734 #32	ENSGT00940000159676 #31	ENSGT00990000203899	ENSGT00940000154345.b #33	ENSGT00940000154345.a #34	ENSGT00940000156789 #35	ENSGT00530000063947.B #36	ENSGT00390000013063 #37	ENSGT00940000163497
Suina	ANCESTRAL SPECIES	1	ENSGT00950000183039.B.b.a ##7	ENSGT00730000111202	ENSGT00940000155531.b	ENSGT00950000183039.B.a #7	ENSGT00940000156335 #9	ENSGT00390000013727.d #10	ENSGT01000000214413.b.a.a #11	ENSGT00940000156305 #12	ENSGT00390000002837 #13	ENSGT00390000009980 #14	ENSGT00940000157401 #15	ENSGT00910000147128	ENSGT00940000155931 #17	ENSGT00390000013701 #19	ENSGT00390000015010 #20	ENSGT00950000183189.a.b.a #22	ENSGT00940000154384.h.a ##23	ENSGT00940000160614 #24	ENSGT00940000156162.C.k #26	ENSGT00940000154552 #27	ENSGT00940000156941 #28	ENSGT00940000164015 #29	ENSGT00940000161734 #32	ENSGT00940000159676 #31	ENSGT00990000203899	ENSGT00940000163715.a	ENSGT00940000154345.b #33	ENSGT00940000154345.a #34	ENSGT00940000156789 #35	ENSGT00530000063947.B #36	ENSGT00390000013063 #37
Chacoan peccary	MODERN SPECIES	944	ZMAT3 (ENSCWAG00000013667)	PIK3CA (ENSCWAG00000013715)	KCNMB3 (ENSCWAG00000013862) #7	ZNF639 (ENSCWAG00000014049) #9	MFN1 (ENSCWAG00000014074) #10	GNB4 (ENSCWAG00000014110) #11	ACTL6A (ENSCWAG00000014148) #12	MRPL47 (ENSCWAG00000014208) #13	ENSCWAG00000014342	ENSCWAG00000014364 #14	USP13 (ENSCWAG00000014441) #15	ENSCWAG00000014493	PEX5L (ENSCWAG00000014594) #17	TTC14 (ENSCWAG00000018170) #19	CCDC39 (ENSCWAG00000018221) #20	FXR1 (ENSCWAG00000010854) #22	DNAJC19 (ENSCWAG00000011201) ##23	SOX2 (ENSCWAG00000011284) #24	ENSCWAG00000011322	ATP11B (ENSCWAG00000011359) #26	DCUN1D1 (ENSCWAG00000011613) #27	MCCC1 (ENSCWAG00000011692) #28	LAMP3 (ENSCWAG00000011926) #29	MCF2L2 (ENSCWAG00000012097) #32	B3GNT5 (ENSCWAG00000012261) #31	KLHL6 (ENSCWAG00000012291) #33	KLHL24 (ENSCWAG00000012354) #34	ENSCWAG00000012399	YEATS2 (ENSCWAG00000012459) #35	MAP6D1 (ENSCWAG00000012551) #36	PARL (ENSCWAG00000012639) #37
Pig	MODERN SPECIES	4	KCNMB2 (ENSSSCG00000011761) ##7	ZMAT3 (ENSSSCG00000033860)	PIK3CA (ENSSSCG00000030413)	KCNMB3 (ENSSSCG00000029240) #7	ENSSSCG00000031922	ZNF639 (ENSSSCG00000038443) #9	MFN1 (ENSSSCG00000039285) #10	GNB4 (ENSSSCG00000037583) #11	ACTL6A (ENSSSCG00000011762) #12	MRPL47 (ENSSSCG00000011763) #13	NDUFB5 (ENSSSCG00000011764) #14	USP13 (ENSSSCG00000011765) #15	PEX5L (ENSSSCG00000011766) #17	TTC14 (ENSSSCG00000011767) #19	CCDC39 (ENSSSCG00000011768) #20	FXR1 (ENSSSCG00000011769) #22	DNAJC19 (ENSSSCG00000011770) ##23	ENSSSCG00000043321	ENSSSCG00000052379	SOX2 (ENSSSCG00000062993) #24	ENSSSCG00000062332 #8	ENSSSCG00000061239	ENSSSCG00000055503	ATP11B (ENSSSCG00000011772) #26	ENSSSCG00000036881	MCCC1 (ENSSSCG00000025942) #28	MCF2L2 (ENSSSCG00000021749) #32	B3GNT5 (ENSSSCG00000024393) #31	ENSSSCG00000034204	ENSSSCG00000031476	KLHL24 (ENSSSCG00000011775) #34
Artiodactyla_a	ANCESTRAL SPECIES	8	ENSGT00950000183039.B.b.a ##7	ENSGT00730000111202	ENSGT00940000155531.b	ENSGT00950000183039.B.a #7	ENSGT00940000156335 #9	ENSGT00390000013727.d #10	ENSGT01000000214413.b.a.a #11	ENSGT00940000156305 #12	ENSGT00390000002837 #13	ENSGT00390000009980 #14	ENSGT00940000157401 #15	ENSGT00910000147128	ENSGT00940000155931 #17	ENSGT00390000013701 #19	ENSGT00390000015010 #20	ENSGT00950000183189.a.b.a #22	ENSGT00940000154384.g ##23	ENSGT00940000160614 #24	ENSGT00940000156162.C.k #26	ENSGT00940000154552 #27	ENSGT00940000156941 #28	ENSGT00950000182899.C.a	ENSGT00940000161734 #32	ENSGT00940000159676 #31	ENSGT00990000203899	ENSGT00940000154345.b #33	ENSGT00940000154345.a #34	ENSGT00940000156789 #35	ENSGT00530000063947.B #36	ENSGT00390000013063 #37	ENSGT00940000163497
Artiodactyla_b	ANCESTRAL SPECIES	6	ENSGT00950000183039.B.b.a ##7	ENSGT00730000111202	ENSGT00940000155531.b	ENSGT00950000183039.B.a #7	ENSGT00940000156335 #9	ENSGT00390000013727.d #10	ENSGT01000000214413.b.a.a #11	ENSGT00940000156305 #12	ENSGT00390000002837 #13	ENSGT00390000009980 #14	ENSGT00940000157401 #15	ENSGT00910000147128	ENSGT00940000155931 #17	ENSGT00390000013701 #19	ENSGT00390000015010 #20	ENSGT00950000183189.a.b.a #22	ENSGT00940000154384.g ##23	ENSGT00940000160614 #24	ENSGT00940000156162.C.k #26	ENSGT00940000154552 #27	ENSGT00940000156941 #28	ENSGT00950000182899.C.a	ENSGT00940000164015 #29	ENSGT00940000161734 #32	ENSGT00940000159676 #31	ENSGT00990000203899	ENSGT00940000154345.b #33	ENSGT00940000154345.a #34	ENSGT00940000156789 #35	ENSGT00530000063947.B #36	ENSGT00390000013063 #37
Cetacea	ANCESTRAL SPECIES	10	ENSGT00950000183039.B.b.a ##7	ENSGT00730000111202	ENSGT00940000155531.b	ENSGT00950000183039.B.a #7	ENSGT00940000156335.a #9	ENSGT00390000013727.d #10	ENSGT01000000214413.b.a.a #11	ENSGT00940000156305 #12	ENSGT00390000002837 #13	ENSGT00390000009980 #14	ENSGT00940000157401 #15	ENSGT00910000147128	ENSGT00940000155931 #17	ENSGT00390000013701 #19	ENSGT00390000015010 #20	ENSGT00950000183189.a.b.a #22	ENSGT00940000154384.g ##23	ENSGT00940000160614 #24	ENSGT00940000156162.C.k #26	ENSGT00940000154552 #27	ENSGT00940000156941 #28	ENSGT00950000182899.C.a	ENSGT00940000159676 #31	ENSGT00940000161734 #32	ENSGT00940000163715.a	ENSGT00990000203899	ENSGT00940000154345.b #33	ENSGT00940000154345.a #34	ENSGT00940000156789 #35	ENSGT00530000063947.B #36	ENSGT00390000013063 #37
Odontoceti	ANCESTRAL SPECIES	9	ENSGT00950000183039.B.b.a ##7	ENSGT00960000192355	ENSGT00730000111202	ENSGT00940000155531.b	ENSGT00950000183039.B.a #7	ENSGT00940000156335.a #9	ENSGT00390000013727.d #10	ENSGT01000000214413.b.a.a #11	ENSGT00940000156305 #12	ENSGT00390000002837 #13	ENSGT00390000009980 #14	ENSGT00940000157401 #15	ENSGT00940000155931 #17	ENSGT00390000013701 #19	ENSGT00390000015010 #20	ENSGT00950000183189.a.b.a #22	ENSGT00940000154384.g ##23	ENSGT00940000160614 #24	ENSGT00940000156162.C.k #26	ENSGT00940000154552 #27	ENSGT00940000156941 #28	ENSGT00950000182899.C.a	ENSGT00940000159676 #31	ENSGT00940000161734 #32	ENSGT00940000163715.a	ENSGT00990000203899	ENSGT00940000154345.b #33	ENSGT00940000154345.a #34	ENSGT00940000156789 #35	ENSGT00530000063947.B #36	ENSGT00390000013063 #37
Odontoceti_a	ANCESTRAL SPECIES	8	ENSGT00960000192355	ENSGT00730000111202	ENSGT00940000155531.b	ENSGT00950000183039.B.a #7	ENSGT00500000045333.c.b.b	ENSGT00940000156335.a #9	ENSGT00390000013727.d #10	ENSGT01000000214413.b.a.a #11	ENSGT00940000156305 #12	ENSGT00390000002837 #13	ENSGT00390000009980 #14	ENSGT00940000157401 #15	ENSGT00940000155931 #17	ENSGT00390000013701 #19	ENSGT00390000015010 #20	ENSGT00950000183189.a.b.a #22	ENSGT00940000154384.g ##23	ENSGT00940000160614 #24	ENSGT00940000156162.C.k #26	ENSGT00940000154552 #27	ENSGT00940000156941 #28	ENSGT00950000182899.C.a	ENSGT00940000159676 #31	ENSGT00940000161734 #32	ENSGT00940000163715.a	ENSGT00990000203899	ENSGT00940000154345.b #33	ENSGT00940000154345.a #34	ENSGT00940000156789 #35	ENSGT00530000063947.B #36	ENSGT00390000013063 #37
Dolphin	MODERN SPECIES	1469														TTC14 (ENSTTRG00000014660) #19	CCDC39 (ENSTTRG00000014681) #20	FXR1 (ENSTTRG00000014698) #22	DNAJC19 (ENSTTRG00000014700) ##23
Odontoceti_b	ANCESTRAL SPECIES	9	ENSGT00960000192355	ENSGT00730000111202	ENSGT00940000155531.b	ENSGT00500000045333.c.b.b	ENSGT00940000156335.a #9	ENSGT00390000013727.d #10	ENSGT01000000214413.b.a.a #11	ENSGT00940000156305 #12	ENSGT00390000002837 #13	ENSGT00390000009980 #14	ENSGT00940000157401 #15	ENSGT00940000155931 #17	ENSGT00390000013701 #19	ENSGT00390000015010 #20	ENSGT00940000155453.k.b	ENSGT00950000183189.a.b.a #22	ENSGT00940000154384.g ##23	ENSGT00940000160614 #24	ENSGT00390000018829.g.b.c.a.a	ENSGT00940000156162.C.k #26	ENSGT00940000154552 #27	ENSGT00390000001413.d	ENSGT00990000211790	ENSGT00940000156941 #28	ENSGT00950000182899.C.a	ENSGT00940000159676 #31	ENSGT00940000161734 #32	ENSGT00990000203899	ENSGT00940000154345.b #33	ENSGT00940000154345.a #34	ENSGT00940000156789 #35
Monodontidae	ANCESTRAL SPECIES	23	ENSGT00730000111202	ENSGT00940000155531.b	ENSGT00500000045333.c.b.b	ENSGT00940000156335.a #9	ENSGT00390000013727.d #10	ENSGT01000000214413.b.a.a #11	ENSGT00510000046985.h.a.jd	ENSGT00940000156305 #12	ENSGT00390000002837 #13	ENSGT00390000009980 #14	ENSGT00940000157401 #15	ENSGT00940000155931 #17	ENSGT00390000013701 #19	ENSGT00390000015010 #20	ENSGT00940000155453.k.b	ENSGT00950000183189.a.b.a #22	ENSGT00940000154384.g ##23
Beluga whale	MODERN SPECIES	111	ZMAT3 (ENSDLEG00000014744)	PIK3CA (ENSDLEG00000014721)	ENSDLEG00000014709	ZNF639 (ENSDLEG00000014693) #9	MFN1 (ENSDLEG00000014635) #10	GNB4 (ENSDLEG00000014597) #11	ENSDLEG00000014581	ACTL6A (ENSDLEG00000014465) #12	MRPL47 (ENSDLEG00000014407) #13	ENSDLEG00000014388 #14	USP13 (ENSDLEG00000014351) #15	PEX5L (ENSDLEG00000012327) #17	TTC14 (ENSDLEG00000012062) #19	CCDC39 (ENSDLEG00000011994) #20	ENSDLEG00000011974	FXR1 (ENSDLEG00000011932) #22	ENSDLEG00000011911 ##23	ENSDLEG00000011882	SOX2 (ENSDLEG00000011877) #24	ENSDLEG00000011867	ATP11B (ENSDLEG00000011729) #26	ENSDLEG00000011713	DCUN1D1 (ENSDLEG00000011699) #27	ENSDLEG00000011686	ENSDLEG00000011678	MCCC1 (ENSDLEG00000011656) #28	B3GNT5 (ENSDLEG00000011651) #31	LAMP3 (ENSDLEG00000011466) #32	KLHL6 (ENSDLEG00000011412) #33	KLHL24 (ENSDLEG00000011392) #34	YEATS2 (ENSDLEG00000011294) #35
Narwhal	MODERN SPECIES	297	ENSMMNG00015002111	ZMAT3 (ENSMMNG00015002091)	PIK3CA (ENSMMNG00015002009)	ENSMMNG00015001952	ENSMMNG00015001936 #9	MFN1 (ENSMMNG00015001899) #10	GNB4 (ENSMMNG00015001871) #11	ENSMMNG00015001853	ACTL6A (ENSMMNG00015001826) #12	MRPL47 (ENSMMNG00015001795) #13	ENSMMNG00015001756 #14	USP13 (ENSMMNG00015001699) #15	PEX5L (ENSMMNG00015001374) #17	TTC14 (ENSMMNG00015001171) #19	CCDC39 (ENSMMNG00015001064) #20	FXR1 (ENSMMNG00015000882) #22	ENSMMNG00015000810 ##23	ENSMMNG00015000787	SOX2 (ENSMMNG00015000779) #24	ENSMMNG00015000768	ATP11B (ENSMMNG00015000694) #26	ENSMMNG00015000676	DCUN1D1 (ENSMMNG00015000639) #27	ENSMMNG00015000610	MCCC1 (ENSMMNG00015000549) #28	ENSMMNG00015000494	B3GNT5 (ENSMMNG00015000474) #31	MCF2L2 (ENSMMNG00015000373) #32	KLHL6 (ENSMMNG00015000283) #33	ENSMMNG00015000255 #34	YEATS2 (ENSMMNG00015000154) #35
Vaquita	MODERN SPECIES	15	PIK3CA (ENSPSNG00000000243)	ENSPSNG00000000310	ZNF639 (ENSPSNG00000000337) #9	MFN1 (ENSPSNG00000000400) #10	GNB4 (ENSPSNG00000000439) #11	ACTL6A (ENSPSNG00000000482) #12	ENSPSNG00000000504	MRPL47 (ENSPSNG00000000528) #13	NDUFB5 (ENSPSNG00000000597) #14	USP13 (ENSPSNG00000000641) #15	PEX5L (ENSPSNG00000000991) #17	ENSPSNG00000001427	TTC14 (ENSPSNG00000001461) #19	CCDC39 (ENSPSNG00000001552) #20	ENSPSNG00000001620	FXR1 (ENSPSNG00000001732) #22	ENSPSNG00000001824 ##23	SOX2 (ENSPSNG00000001850) #24	ENSPSNG00000001868	ENSPSNG00000001895	ENSPSNG00000001911 #26	ENSPSNG00000001934 #26	ENSPSNG00000001973 #26	DCUN1D1 (ENSPSNG00000001998) #27	ENSPSNG00000002009	ENSPSNG00000002025	MCCC1 (ENSPSNG00000002070) #28	LAMP3 (ENSPSNG00000002153) #29	MCF2L2 (ENSPSNG00000002227) #32	B3GNT5 (ENSPSNG00000002266) #31	ENSPSNG00000002280
Sperm whale	MODERN SPECIES		ENSPCTG00005002512	ZMAT3 (ENSPCTG00005002527)	PIK3CA (ENSPCTG00005002544)	ZNF639 (ENSPCTG00005002565) #9	MFN1 (ENSPCTG00005002577) #10	GNB4 (ENSPCTG00005002602) #11	ACTL6A (ENSPCTG00005002626) #12	MRPL47 (ENSPCTG00005002655) #13	NDUFB5 (ENSPCTG00005002691) #14	USP13 (ENSPCTG00005002736) #15	PEX5L (ENSPCTG00005002908) #17	ENSPCTG00005003697	ENSPCTG00005003702	TTC14 (ENSPCTG00005003714) #19	CCDC39 (ENSPCTG00005003737) #20	FXR1 (ENSPCTG00005003785) #22	ENSPCTG00005003919 ##23	SOX2 (ENSPCTG00005003937) #24	ENSPCTG00005003941	ENSPCTG00005003956	ATP11B (ENSPCTG00005004005) #26	ENSPCTG00005005564	DCUN1D1 (ENSPCTG00005005589) #27	ENSPCTG00005005649	MCCC1 (ENSPCTG00005005715) #28	LAMP3 (ENSPCTG00005005882) #29	MCF2L2 (ENSPCTG00005005943) #32	B3GNT5 (ENSPCTG00005005989) #31	KLHL6 (ENSPCTG00005006059) #33	YEATS2 (ENSPCTG00005006122) #35	MAP6D1 (ENSPCTG00005006390) #36
Blue whale	DUPLICATION
Blue whale	MODERN SPECIES	19	ALKBH3 (ENSBMSG00010013420)	HSD17B12 (ENSBMSG00010013402)	TTC17 (ENSBMSG00010013363)	API5 (ENSBMSG00010013262)	ENSBMSG00010013220	ENSBMSG00010013215	ENSBMSG00010013207	LRRC4C (ENSBMSG00010013196)	ENSBMSG00010013188	ENSBMSG00010013173	RAG2 (ENSBMSG00010013164)	RAG1 (ENSBMSG00010013155)	TRAF6 (ENSBMSG00010013148)	PRR5L (ENSBMSG00010013135)	COMMD9 (ENSBMSG00010013117)	ENSBMSG00010013107 #22	LDLRAD3 (ENSBMSG00010013096)	ENSBMSG00010013080	FJX1 (ENSBMSG00010013062)	PAMR1 (ENSBMSG00010013047)	SLC1A2 (ENSBMSG00010012885)	CD44 (ENSBMSG00010012733)	ENSBMSG00010012689	PDHX (ENSBMSG00010013305)	APIP (ENSBMSG00010013281)	EHF (ENSBMSG00010013242)	ELF5 (ENSBMSG00010013193)	CAT (ENSBMSG00010013166)	ABTB2 (ENSBMSG00010013147)	NAT10 (ENSBMSG00010013127)	CAPRIN1 (ENSBMSG00010013072)
Blue whale	MODERN SPECIES	15	ENSBMSG00010003697	CRYGB (ENSBMSG00010003704)	CRYGA (ENSBMSG00010003714)	ENSBMSG00010003722	ZNF639 (ENSBMSG00010003730) #9	MFN1 (ENSBMSG00010003738) #10	GNB4 (ENSBMSG00010003748) #11	ENSBMSG00010003758 #12	MRPL47 (ENSBMSG00010003775) #13	NDUFB5 (ENSBMSG00010003799) #14	USP13 (ENSBMSG00010003825) #15	ENSBMSG00010003863	PEX5L (ENSBMSG00010003978) #17	TTC14 (ENSBMSG00010004833) #19	CCDC39 (ENSBMSG00010004860) #20	ENSBMSG00010004914 #22	ENSBMSG00010004956 ##23	SOX2 (ENSBMSG00010004972) #24	ATP11B (ENSBMSG00010006023) #26	DCUN1D1 (ENSBMSG00010006245) #27	ENSBMSG00010006269	ENSBMSG00010006280	MCCC1 (ENSBMSG00010006304) #28	LAMP3 (ENSBMSG00010006362) #29	MCF2L2 (ENSBMSG00010006391) #32	B3GNT5 (ENSBMSG00010006443) #31	KLHL6 (ENSBMSG00010006477) #33	KLHL24 (ENSBMSG00010006493) #34	YEATS2 (ENSBMSG00010006529) #35	MAP6D1 (ENSBMSG00010006549) #36	ENSBMSG00010006580 #37
Pecora	ANCESTRAL SPECIES	8	ENSGT00950000183039.B.b.a ##7	ENSGT00730000111202	ENSGT00940000155531.b	ENSGT00950000183039.B.a #7	ENSGT00940000156335 #9	ENSGT00390000013727.d #10	ENSGT01000000214413.b.a.a #11	ENSGT00940000156305 #12	ENSGT00390000002837 #13	ENSGT00390000009980 #14	ENSGT00940000157401 #15	ENSGT00910000147128	ENSGT00940000155931 #17	ENSGT00390000013701 #19	ENSGT00390000015010 #20	ENSGT00950000183189.a.b.a #22	ENSGT00940000154384.g ##23	ENSGT00940000160614 #24	ENSGT00940000156162.C.k #26	ENSGT00940000154552 #27	ENSGT00940000156941 #28	ENSGT00950000182899.C.a	ENSGT00940000159676 #31	ENSGT00940000161734 #32	ENSGT00940000163715.a	ENSGT00940000154345.b #33	ENSGT00940000154345.a #34	ENSGT00940000156789 #35	ENSGT00530000063947.B #36	ENSGT00390000013063 #37	ENSGT00940000163497
Yarkand deer	MODERN SPECIES	10	KCNMB2 (ENSCHYG00000021244) ##7	ZMAT3 (ENSCHYG00000021162)	PIK3CA (ENSCHYG00000020926)	ENSCHYG00000020552 #7	ZNF639 (ENSCHYG00000020480) #9	MFN1 (ENSCHYG00000020157) #10	GNB4 (ENSCHYG00000020053) #11	ACTL6A (ENSCHYG00000019950) #12	MRPL47 (ENSCHYG00000019750) #13	NDUFB5 (ENSCHYG00000019479) #14	USP13 (ENSCHYG00000018967) #15	PEX5L (ENSCHYG00000017068) #17	ENSCHYG00000016977	TTC14 (ENSCHYG00000016786) #19	CCDC39 (ENSCHYG00000016666) #20	FXR1 (ENSCHYG00000015742) #22	DNAJC19 (ENSCHYG00000015489) ##23	ATP11B (ENSCHYG00000013977) #26	ENSCHYG00000013883	DCUN1D1 (ENSCHYG00000013798) #27	ENSCHYG00000013773	MCCC1 (ENSCHYG00000013336) #28	LAMP3 (ENSCHYG00000013102) #29	MCF2L2 (ENSCHYG00000013028) #32	ENSCHYG00000012973	ENSCHYG00000012825	KLHL24 (ENSCHYG00000012697) #34	ENSCHYG00000012636	YEATS2 (ENSCHYG00000011810) #35	PARL (ENSCHYG00000011557) #37	ABCC5 (ENSCHYG00000011061)
Percora_a	ANCESTRAL SPECIES	7	ENSGT00950000183039.B.b.a ##7	ENSGT00730000111202	ENSGT00940000155531.b	ENSGT00950000183039.B.a #7	ENSGT00940000156335 #9	ENSGT00390000013727.d #10	ENSGT01000000214413.b.a.a #11	ENSGT00940000156305 #12	ENSGT00390000002837 #13	ENSGT00390000009980 #14	ENSGT00940000157401 #15	ENSGT00910000147128	ENSGT00940000155931 #17	ENSGT00390000013701 #19	ENSGT00390000015010 #20	ENSGT00950000183189.a.b.a #22	ENSGT00940000154384.g ##23	ENSGT00940000160614 #24	ENSGT00940000156162.C.k #26	ENSGT00940000154552 #27	ENSGT00940000156941 #28	ENSGT00950000182899.C.a	ENSGT00940000159676 #31	ENSGT00940000161734 #32	ENSGT00940000163715.a	ENSGT00940000154345.b #33	ENSGT00940000154345.a #34	ENSGT00940000156789 #35	ENSGT00530000063947.B #36	ENSGT00390000013063 #37	ENSGT00940000163497
Bovidae	ANCESTRAL SPECIES	9	ENSGT00950000183039.B.b.a ##7	ENSGT00730000111202	ENSGT00940000155531.b	ENSGT00950000183039.B.a #7	ENSGT00940000156335 #9	ENSGT00390000013727.d #10	ENSGT01000000214413.b.a.a #11	ENSGT00940000156305 #12	ENSGT00390000002837 #13	ENSGT00390000009980 #14	ENSGT00940000157401 #15	ENSGT00910000147128	ENSGT00940000155931 #17	ENSGT00390000013701 #19	ENSGT00390000015010 #20	ENSGT00950000183189.a.b.a #22	ENSGT00940000154384.g ##23	ENSGT00940000160614 #24	ENSGT00940000156162.C.k #26	ENSGT00940000154552 #27	ENSGT00940000156941 #28	ENSGT00950000182899.C.a	ENSGT00940000159676 #31	ENSGT00940000161734 #32	ENSGT00940000163715.a	ENSGT00940000154345.b #33	ENSGT00940000154345.a #34	ENSGT00940000156789 #35	ENSGT00530000063947.B #36	ENSGT00390000013063 #37	ENSGT00940000163497
Caprinae	ANCESTRAL SPECIES	8	ENSGT00950000183039.B.b.a ##7	ENSGT00730000111202	ENSGT00940000155531.b	ENSGT00950000183039.B.a #7	ENSGT00940000156335 #9	ENSGT00390000013727.d #10	ENSGT01000000214413.b.a.a #11	ENSGT00940000156305 #12	ENSGT00390000002837 #13	ENSGT00390000009980 #14	ENSGT00940000157401 #15	ENSGT00910000147128	ENSGT00940000155931 #17	ENSGT00390000013701 #19	ENSGT00390000015010 #20	ENSGT00950000183189.a.b.a #22	ENSGT00940000154384.g ##23	ENSGT00940000160614 #24	ENSGT00940000173300	ENSGT00940000156162.C.k #26	ENSGT00940000154552 #27	ENSGT00940000156941 #28	ENSGT00950000182899.C.a	ENSGT00940000159676 #31	ENSGT00940000161734 #32	ENSGT00940000163715.a	ENSGT00940000154345.a #34	ENSGT00940000156789 #35	ENSGT00530000063947.B #36	ENSGT00390000013063 #37	ENSGT00940000155470.b
Goat	MODERN SPECIES		PIK3CA (ENSCHIG00000016154)	KCNMB3 (ENSCHIG00000021624) #7	ZNF639 (ENSCHIG00000025519) #9	MFN1 (ENSCHIG00000021326) #10	GNB4 (ENSCHIG00000011036) #11	ACTL6A (ENSCHIG00000017016) #12	MRPL47 (ENSCHIG00000013922) #13	NDUFB5 (ENSCHIG00000024994) #14	USP13 (ENSCHIG00000020163) #15	ENSCHIG00000017176	PEX5L (ENSCHIG00000021885) #17	TTC14 (ENSCHIG00000013993) #19	CCDC39 (ENSCHIG00000025334) #20	ENSCHIG00000002251	ENSCHIG00000025304	FXR1 (ENSCHIG00000017202) #22	ENSCHIG00000022989 ##23	SOX2 (ENSCHIG00000011126) #24	ENSCHIG00000018528	ENSCHIG00000026896	ATP11B (ENSCHIG00000006700) #26	DCUN1D1 (ENSCHIG00000012704) #27	MCCC1 (ENSCHIG00000025794) #28	ENSCHIG00000012113	B3GNT5 (ENSCHIG00000007874) #31	MCF2L2 (ENSCHIG00000012229) #32	ENSCHIG00000023082	KLHL24 (ENSCHIG00000021673) #34	ENSCHIG00000010607	MAP6D1 (ENSCHIG00000017564) #36	YEATS2 (ENSCHIG00000013530) #35
Rambouillet Sheep	MODERN SPECIES		ENSOARG00020000133	KCNMB2 (ENSOARG00020000078) ##7	ZMAT3 (ENSOARG00020000075)	PIK3CA (ENSOARG00020010030)	ENSOARG00020009952 #7	ZNF639 (ENSOARG00020009893) #9	MFN1 (ENSOARG00020009679) #10	GNB4 (ENSOARG00020009587) #11	ACTL6A (ENSOARG00020009394) #12	MRPL47 (ENSOARG00020009272) #13	NDUFB5 (ENSOARG00020009071) #14	USP13 (ENSOARG00020008860) #15	PEX5L (ENSOARG00020007531) #17	CCDC39 (ENSOARG00020006964) #20	TTC14 (ENSOARG00020006723) #19	FXR1 (ENSOARG00020005863) #22	DNAJC19 (ENSOARG00020005775) ##23	SOX2 (ENSOARG00020005758) #24	ENSOARG00020005742	ATP11B (ENSOARG00020005548) #26	DCUN1D1 (ENSOARG00020005500) #27	MCCC1 (ENSOARG00020005367) #28	ENSOARG00020005267	B3GNT5 (ENSOARG00020005246) #31	MCF2L2 (ENSOARG00020005175) #32	KLHL6 (ENSOARG00020005141)	KLHL24 (ENSOARG00020005097) #34	YEATS2 (ENSOARG00020004961) #35	MAP6D1 (ENSOARG00020004912) #36	PARL (ENSOARG00020004881) #37	ABCC5 (ENSOARG00020004748)
Bovinae	ANCESTRAL SPECIES	6	ENSGT00940000153421.a.b	ENSGT00950000183039.B.b.a ##7	ENSGT00730000111202	ENSGT00940000155531.b	ENSGT00950000183039.B.a #7	ENSGT00940000156335 #9	ENSGT00390000013727.d #10	ENSGT01000000214413.b.a.a #11	ENSGT00940000156305 #12	ENSGT00390000002837 #13	ENSGT00390000009980 #14	ENSGT00940000157401 #15	ENSGT00940000155931 #17	ENSGT00390000013701 #19	ENSGT00390000015010 #20	ENSGT00950000183189.a.b.a #22	ENSGT00940000154384.g ##23	ENSGT00940000160614 #24	ENSGT00940000156162.C.k #26	ENSGT00940000154552 #27	ENSGT00940000156941 #28	ENSGT00950000182899.C.a	ENSGT00940000159676 #31	ENSGT00940000153525.g.b.a.n	ENSGT00940000164015 #29	ENSGT00940000161734 #32	ENSGT00940000154345.b #33	ENSGT00940000154345.a #34	ENSGT00940000156789 #35	ENSGT00530000063947.B #36	ENSGT00390000013063 #37
Bos	ANCESTRAL SPECIES	7	ENSGT00940000153421.a.b	ENSGT00950000183039.B.b.a ##7	ENSGT00730000111202	ENSGT00940000155531.b	ENSGT00950000183039.B.a #7	ENSGT00940000156335 #9	ENSGT00390000013727.d #10	ENSGT01000000214413.b.a.a #11	ENSGT00940000156305 #12	ENSGT00390000002837 #13	ENSGT00390000009980 #14	ENSGT00940000157401 #15	ENSGT00940000155931.f #17	ENSGT00390000013701 #19	ENSGT00390000015010 #20	ENSGT00950000183189.a.b.a #22	ENSGT00940000154384.g ##23	ENSGT00940000156162.C.k #26	ENSGT00940000154552 #27	ENSGT00940000156941 #28	ENSGT00950000182899.C.a	ENSGT00940000159676 #31	ENSGT00940000153525.g.b.a.n	ENSGT00940000161734 #32	ENSGT00940000154345.b #33	ENSGT00940000154345.a #34	ENSGT00940000156789 #35	ENSGT00530000063947.B #36	ENSGT00390000013063 #37	ENSGT00390000017491.t.t.a.a	ENSGT00940000163497
Bos_a	ANCESTRAL SPECIES	5	ENSGT00940000153421.a.b	ENSGT00950000183039.B.b.a ##7	ENSGT00730000111202	ENSGT00940000155531.b	ENSGT00950000183039.B.a #7	ENSGT00940000156335 #9	ENSGT00390000013727.d #10	ENSGT01000000214413.b.a.a #11	ENSGT00940000156305 #12	ENSGT00390000002837 #13	ENSGT00390000009980 #14	ENSGT00940000157401 #15	ENSGT00940000155931.f #17	ENSGT00390000013701 #19	ENSGT00390000015010 #20	ENSGT00950000183189.a.b.a #22	ENSGT00940000154384.g ##23	ENSGT00940000156162.C.k #26	ENSGT00940000154552 #27	ENSGT00940000156941 #28	ENSGT00950000182899.C.a	ENSGT00940000159676 #31	ENSGT00940000153525.g.b.a.n	ENSGT00940000161734 #32	ENSGT00940000154345.b #33	ENSGT00940000154345.a #34	ENSGT00940000156789 #35	ENSGT00530000063947.B #36	ENSGT00390000013063 #37	ENSGT00390000017491.t.t.a.a	ENSGT00940000163497
Wild yak	MODERN SPECIES	495	KCNMB2 (ENSBMUG00000016601) ##7	ZMAT3 (ENSBMUG00000016617)	PIK3CA (ENSBMUG00000016649)	ENSBMUG00000016675 #7	ENSBMUG00000016679	ZNF639 (ENSBMUG00000016692) #9	MFN1 (ENSBMUG00000016720) #10	GNB4 (ENSBMUG00000016733) #11	ACTL6A (ENSBMUG00000016746) #12	MRPL47 (ENSBMUG00000016765) #13	NDUFB5 (ENSBMUG00000016813) #14	USP13 (ENSBMUG00000016857) #15	PEX5L (ENSBMUG00000017113) #17	TTC14 (ENSBMUG00000017289) #19	CCDC39 (ENSBMUG00000017317) #20	FXR1 (ENSBMUG00000017444) #22	ENSBMUG00000017548 ##23	ENSBMUG00000017572	ATP11B (ENSBMUG00000017711) #26	DCUN1D1 (ENSBMUG00000017739) #27	MCCC1 (ENSBMUG00000017803) #28	ENSBMUG00000017850	MCF2L2 (ENSBMUG00000017904) #32	ENSBMUG00000017918
Domestic yak	MODERN SPECIES		KCNMB2 (ENSBGRG00000003278) ##7	ZMAT3 (ENSBGRG00000003264)	PIK3CA (ENSBGRG00000003231)	ENSBGRG00000003201 #7	ENSBGRG00000003193	ENSBGRG00000003185	MFN1 (ENSBGRG00000003142) #10	GNB4 (ENSBGRG00000003113) #11	ACTL6A (ENSBGRG00000003086) #12	MRPL47 (ENSBGRG00000003051) #13	NDUFB5 (ENSBGRG00000003013) #14	USP13 (ENSBGRG00000002861) #15	ENSBGRG00000002451 #17	TTC14 (ENSBGRG00000002327) #19	CCDC39 (ENSBGRG00000002146) #20	FXR1 (ENSBGRG00000001900) #22	DNAJC19 (ENSBGRG00000001844) ##23	ATP11B (ENSBGRG00000001781) #26	DCUN1D1 (ENSBGRG00000001763) #27	MCCC1 (ENSBGRG00000001725) #28	ENSBGRG00000001692	B3GNT5 (ENSBGRG00000001683) #31	ENSBGRG00000001679	MCF2L2 (ENSBGRG00000001502) #32	KLHL6 (ENSBGRG00000001459) #33	KLHL24 (ENSBGRG00000001442) #34	ENSBGRG00000001430	YEATS2 (ENSBGRG00000001414) #35	MAP6D1 (ENSBGRG00000001403) #36	PARL (ENSBGRG00000001380) #37	ENSBGRG00000001362
Bos_b	ANCESTRAL SPECIES	5	ENSGT00940000153421.a.b	ENSGT00950000183039.B.b.a ##7	ENSGT00730000111202	ENSGT00940000155531.b	ENSGT00950000183039.B.a #7	ENSGT00940000156335 #9	ENSGT00390000013727.d #10	ENSGT01000000214413.b.a.a #11	ENSGT00940000156305 #12	ENSGT00390000002837 #13	ENSGT00390000009980 #14	ENSGT00940000157401 #15	ENSGT00940000155931.f #17	ENSGT00390000013701 #19	ENSGT00390000015010 #20	ENSGT00950000183189.a.b.a #22	ENSGT00940000154384.g ##23	ENSGT00940000156162.C.k #26	ENSGT00940000154552 #27	ENSGT00940000156941 #28	ENSGT00950000182899.C.a	ENSGT00940000159676 #31	ENSGT00940000153525.g.b.a.n	ENSGT00940000161734 #32	ENSGT00940000163715.a	ENSGT00940000154345.a #34	ENSGT00940000156789 #35	ENSGT00530000063947.B #36	ENSGT00390000013063 #37	ENSGT00390000017491.t.t.a.a	ENSGT00940000163497
Hybrid Bos Indicus	MODERN SPECIES		PIK3CA (ENSBIXG00005017279)	KCNMB3 (ENSBIXG00005002817) #7	ZNF639 (ENSBIXG00005017422) #9	ENSBIXG00005017430	MFN1 (ENSBIXG00005007801) #10	GNB4 (ENSBIXG00005017563) #11	ACTL6A (ENSBIXG00005017648) #12	MRPL47 (ENSBIXG00005017737) #13	NDUFB5 (ENSBIXG00005017808) #14	ENSBIXG00005017824	USP13 (ENSBIXG00005017875) #15	PEX5L (ENSBIXG00005018250) #17	TTC14 (ENSBIXG00005018361) #19	CCDC39 (ENSBIXG00005018434) #20	ENSBIXG00005018457	FXR1 (ENSBIXG00005000056) #22	ENSBIXG00005003104 ##23	ATP11B (ENSBIXG00005003151) #26	DCUN1D1 (ENSBIXG00005019545) #27	MCCC1 (ENSBIXG00005019762) #28	ENSBIXG00005019865	B3GNT5 (ENSBIXG00005019925) #31	ENSBIXG00005019943	MCF2L2 (ENSBIXG00005019985) #32	ENSBIXG00005020055	KLHL24 (ENSBIXG00005020085) #34	ENSBIXG00005020097	YEATS2 (ENSBIXG00005020144) #35	MAP6D1 (ENSBIXG00005003322) #36	PARL (ENSBIXG00005020209) #37	ENSBIXG00005003364
Cow	MODERN SPECIES		ZMAT3 (ENSBTAG00000012463)	ENSBTAG00000054655	PIK3CA (ENSBTAG00000009232)	KCNMB3 (ENSBTAG00000009235) #7	ZNF639 (ENSBTAG00000037393) #9	ENSBTAG00000050978	MFN1 (ENSBTAG00000010485) #10	GNB4 (ENSBTAG00000002767) #11	ACTL6A (ENSBTAG00000002460) #12	MRPL47 (ENSBTAG00000002462) #13	NDUFB5 (ENSBTAG00000002463) #14	USP13 (ENSBTAG00000005946) #15	PEX5L (ENSBTAG00000013219) #17	TTC14 (ENSBTAG00000001968) #19	CCDC39 (ENSBTAG00000001969) #20	FXR1 (ENSBTAG00000016457) #22	DNAJC19 (ENSBTAG00000023513) ##23	ATP11B (ENSBTAG00000000290) #26	DCUN1D1 (ENSBTAG00000012797) #27	MCCC1 (ENSBTAG00000006548) #28	LAMP3 (ENSBTAG00000006552)	B3GNT5 (ENSBTAG00000010397) #31	ENSBTAG00000032217	MCF2L2 (ENSBTAG00000010394) #32	KLHL6 (ENSBTAG00000037951)	KLHL24 (ENSBTAG00000017450) #34	ENSBTAG00000014449	YEATS2 (ENSBTAG00000014451) #35	MAP6D1 (ENSBTAG00000014459) #36	PARL (ENSBTAG00000014460) #37	ENSBTAG00000052825
American bison	MODERN SPECIES	3281		KCNMB2 (ENSBBBG00000016906) ##7	ZMAT3 (ENSBBBG00000016883)	PIK3CA (ENSBBBG00000016857)	KCNMB3 (ENSBBBG00000016801) #7	ZNF639 (ENSBBBG00000016766) #9	MFN1 (ENSBBBG00000016746) #10	GNB4 (ENSBBBG00000000725) #11	ACTL6A (ENSBBBG00000004132) #12	MRPL47 (ENSBBBG00000016656) #13	NDUFB5 (ENSBBBG00000016629) #14	USP13 (ENSBBBG00000016615) #15	PEX5L (ENSBBBG00000016549) #17	TTC14 (ENSBBBG00000016091) #19	CCDC39 (ENSBBBG00000016047) #20	FXR1 (ENSBBBG00000016010) #22	ENSBBBG00000015808 ##23	SOX2 (ENSBBBG00000015767) #24	ATP11B (ENSBBBG00000015744) #26	DCUN1D1 (ENSBBBG00000002643) #27	MCCC1 (ENSBBBG00000015686) #28	LAMP3 (ENSBBBG00000003901) #29	MCF2L2 (ENSBBBG00000003450) #32	B3GNT5 (ENSBBBG00000007365) #31	ENSBBBG00000007417	KLHL6 (ENSBBBG00000003863) #33	KLHL24 (ENSBBBG00000003862) #34	ENSBBBG00000015498	YEATS2 (ENSBBBG00000002697) #35	PARL (ENSBBBG00000003851) #37	ENSBBBG00000015445
Siberian musk deer	DUPLICATION
Siberian musk deer	MODERN SPECIES	139	KCNMB2 (ENSMMSG00000003557) ##7	ENSMMSG00000003544	ZMAT3 (ENSMMSG00000003531)	PIK3CA (ENSMMSG00000003505)	KCNMB3 (ENSMMSG00000003476) #7	ZNF639 (ENSMMSG00000003462) #9	MFN1 (ENSMMSG00000003440) #10	GNB4 (ENSMMSG00000003419) #11	ACTL6A (ENSMMSG00000003389) #12	MRPL47 (ENSMMSG00000003361) #13	NDUFB5 (ENSMMSG00000003341) #14	USP13 (ENSMMSG00000003298) #15	PEX5L (ENSMMSG00000001803) #17	TTC14 (ENSMMSG00000001675) #19	CCDC39 (ENSMMSG00000001595) #20	ENSMMSG00000001203 #22	ENSMMSG00000001124 ##23	ENSMMSG00000001107	SOX2 (ENSMMSG00000001102) #24	ATP11B (ENSMMSG00000000997) #26	DCUN1D1 (ENSMMSG00000000928) #27	MCCC1 (ENSMMSG00000000836) #28	ENSMMSG00000000791	B3GNT5 (ENSMMSG00000000777) #31	KLHL6 (ENSMMSG00000000728) #33	KLHL24 (ENSMMSG00000000711) #34	YEATS2 (ENSMMSG00000000661) #35	MAP6D1 (ENSMMSG00000000647) #36	PARL (ENSMMSG00000000606) #37	ABCC5 (ENSMMSG00000000523)	ENSMMSG00000000472
Siberian musk deer	MODERN SPECIES	1135	ENSMMSG00000015875	ENSMMSG00000015993	RAD51C (ENSMMSG00000016025)	PPM1E (ENSMMSG00000016076)	ENSMMSG00000016120	ENSMMSG00000016149	TRIM37 (ENSMMSG00000016226)	ENSMMSG00000016834	PRR11 (ENSMMSG00000016926)	SMG8 (ENSMMSG00000016941)	GDPD1 (ENSMMSG00000016972)	YPEL2 (ENSMMSG00000017002)	DHX40 (ENSMMSG00000017044)	CLTC (ENSMMSG00000017156)	ENSMMSG00000017333	ENSMMSG00000017353 #22	PTRH2 (ENSMMSG00000017362)	VMP1 (ENSMMSG00000017374)	TUBD1 (ENSMMSG00000017458)	RPS6KB1 (ENSMMSG00000017714)	RNFT1 (ENSMMSG00000017906)	ENSMMSG00000017945	ENSMMSG00000018037	MED13 (ENSMMSG00000018082)	INTS2 (ENSMMSG00000018213)	BRIP1 (ENSMMSG00000018426)	ENSMMSG00000018558	TBX4 (ENSMMSG00000018587)	TBX2 (ENSMMSG00000007917)	BCAS3 (ENSMMSG00000008066)	PPM1D (ENSMMSG00000008295)
Camelidae	ANCESTRAL SPECIES		ENSGT00950000183039.B.b.a ##7	ENSGT00730000111202	ENSGT00940000155531.b	ENSGT00950000183039.B.a #7	ENSGT00940000156335 #9	ENSGT00390000013727.d #10	ENSGT01000000214413.b.a.a #11	ENSGT00940000156305 #12	ENSGT00390000002837 #13	ENSGT00390000009980 #14	ENSGT00940000157401 #15	ENSGT00910000147128	ENSGT00940000155931 #17	ENSGT00390000013701 #19	ENSGT00390000015010 #20	ENSGT00950000183189.a.b.a #22	ENSGT00940000154384.g ##23	ENSGT00940000160614 #24	ENSGT00940000156162.C.k #26	ENSGT00940000154552 #27	ENSGT00940000156941 #28	ENSGT00950000182899.C.a	ENSGT00940000161734 #32	ENSGT00940000159676 #31	ENSGT00990000203899	ENSGT00940000154345.b #33	ENSGT00940000154345.a #34	ENSGT00940000156789 #35	ENSGT00530000063947.B #36	ENSGT00390000013063 #37	ENSGT00940000163497
Arabian camel	MODERN SPECIES		PIK3CA (ENSCDRG00005000192)	ENSCDRG00005000278	ENSCDRG00005000287 #7	ZNF639 (ENSCDRG00005000309) #9	MFN1 (ENSCDRG00005000323) #10	GNB4 (ENSCDRG00005000360) #11	ACTL6A (ENSCDRG00005000384) #12	ENSCDRG00005000409	MRPL47 (ENSCDRG00005000428) #13	NDUFB5 (ENSCDRG00005000451) #14	USP13 (ENSCDRG00005000482) #15	ENSCDRG00005000524	PEX5L (ENSCDRG00005000654) #17	TTC14 (ENSCDRG00005001332) #19	CCDC39 (ENSCDRG00005001364) #20	FXR1 (ENSCDRG00005001445) #22	DNAJC19 (ENSCDRG00005001633) ##23	ENSCDRG00005001671	ENSCDRG00005001685	ATP11B (ENSCDRG00005001739) #26	DCUN1D1 (ENSCDRG00005001947) #27	MCCC1 (ENSCDRG00005001977) #28	ENSCDRG00005002021	MCF2L2 (ENSCDRG00005002052) #32	B3GNT5 (ENSCDRG00005002144) #31	ENSCDRG00005002149	KLHL6 (ENSCDRG00005002158) #33	KLHL24 (ENSCDRG00005002173) #34	YEATS2 (ENSCDRG00005002196) #35	MAP6D1 (ENSCDRG00005002239) #36	PARL (ENSCDRG00005002270) #37
Alpaca	MODERN SPECIES	1542														TTC14 (ENSVPAG00000003378) #19	ENSVPAG00000003379 #20	FXR1 (ENSVPAG00000003384) #22	DNAJC19 (ENSVPAG00000003387) ##23
Atlantogenata	ANCESTRAL SPECIES	19	ENSGT00940000153421.a.b	ENSGT00950000183039.B.b.a ##7	ENSGT00730000111202	ENSGT00940000155531.b	ENSGT00950000183039.B.a #7	ENSGT00940000156335 #9	ENSGT00390000013727.d #10	ENSGT01000000214413.b.a.a #11	ENSGT00940000156305 #12	ENSGT00390000002837 #13	ENSGT00390000009980 #14	ENSGT00940000157401 #15	ENSGT00940000155931 #17	ENSGT00390000013701 #19	ENSGT00390000015010 #20	ENSGT00950000183189.a.b.a #22	ENSGT00940000154384.h.a ##23	ENSGT00940000154384.h.b #23	ENSGT00940000160614 #24	ENSGT00940000156162.C.k #26	ENSGT00940000154552 #27	ENSGT00940000156941 #28	ENSGT00950000182899.C.a	ENSGT00940000164015 #29	ENSGT00940000159676 #31	ENSGT00940000161734 #32	ENSGT00940000163715.a	ENSGT00940000154345.a #34	ENSGT00940000156789 #35	ENSGT00530000063947.B #36	ENSGT00390000013063 #37
Afrotheria	ANCESTRAL SPECIES	17									ENSGT00940000156305 #12	ENSGT00390000002837 #13	ENSGT00390000009980 #14	ENSGT00940000157401 #15	ENSGT00940000155931 #17	ENSGT00390000013701 #19	ENSGT00390000015010 #20	ENSGT00950000183189.a.b.a #22	ENSGT00940000154384.h.a ##23	ENSGT00940000154384.h.b #23	ENSGT00940000160614 #24	ENSGT00940000156162.C.k #26	ENSGT00940000154552 #27	ENSGT00940000156941 #28	ENSGT00950000182899.C.a	ENSGT00940000164015 #29	ENSGT00940000159676 #31	ENSGT00940000161734 #32	ENSGT00940000163715.a	ENSGT00940000154345.a #34	ENSGT00940000156789 #35	ENSGT00530000063947.B #36	ENSGT00390000013063 #37
Afrotheria_a	ANCESTRAL SPECIES	16									ENSGT00940000156305 #12	ENSGT00390000002837 #13	ENSGT00390000009980 #14	ENSGT00940000157401 #15	ENSGT00940000155931 #17	ENSGT00390000013701 #19	ENSGT00390000015010 #20	ENSGT00950000183189.a.b.a #22	ENSGT00940000154384.h.a ##23	ENSGT00940000154384.h.b #23	ENSGT00940000160614 #24	ENSGT00940000156162.C.k #26	ENSGT00940000154552 #27	ENSGT00940000156941 #28	ENSGT00950000182899.C.a	ENSGT00940000164015 #29	ENSGT00940000159676 #31	ENSGT00940000161734 #32	ENSGT00940000163715.a	ENSGT00940000154345.a #34	ENSGT00940000156789 #35	ENSGT00530000063947.B #36	ENSGT00390000013063 #37
Elephant	MODERN SPECIES	261								MFN1 (ENSLAFG00000008856) #10	ACTL6A (ENSLAFG00000013530) #12	MRPL47 (ENSLAFG00000018470) #13	NDUFB5 (ENSLAFG00000022619) #14	USP13 (ENSLAFG00000015504) #15	PEX5L (ENSLAFG00000015513) #17	TTC14 (ENSLAFG00000013418) #19	CCDC39 (ENSLAFG00000013426) #20	FXR1 (ENSLAFG00000001908) #22	ENSLAFG00000001910 #23	SOX2 (ENSLAFG00000006096) #24	ATP11B (ENSLAFG00000010151) #26	DCUN1D1 (ENSLAFG00000016514) #27	MCCC1 (ENSLAFG00000018018) #28	LAMP3 (ENSLAFG00000022746) #29	B3GNT5 (ENSLAFG00000000374) #31	ENSLAFG00000000369 #32	ENSLAFG00000008616	KLHL24 (ENSLAFG00000008621) #34	YEATS2 (ENSLAFG00000010347) #35	ENSLAFG00000031362 #36	PARL (ENSLAFG00000010360) #37	ABCC5 (ENSLAFG00000003077)	HTR3D (ENSLAFG00000003080)
Hyrax	MODERN SPECIES	1237																ENSPCAG00000014881 #22	DNAJC19 (ENSPCAG00000014950) ##23
Tenrec	MODERN SPECIES	1571																FXR1 (ENSETEG00000006891) #22	DNAJC19 (ENSETEG00000006897) ##23
Xenarthra	ANCESTRAL SPECIES	1374														ENSGT00390000013701 #19	ENSGT00390000015010 #20	ENSGT00950000183189.a.b.a #22
Armadillo	DUPLICATION
Armadillo	MODERN SPECIES	3678														TTC14 (ENSDNOG00000000730) #19	CCDC39 (ENSDNOG00000000732) #20	ENSDNOG00000019065 #22	ENSDNOG00000044604	SOX2 (ENSDNOG00000019903) #24	ENSDNOG00000049028	ENSDNOG00000048698	ENSDNOG00000038305	ATP11B (ENSDNOG00000013502) #26
Armadillo	MODERN SPECIES	2908										SMIM12 (ENSDNOG00000037316)	DLGAP3 (ENSDNOG00000019762)	TMEM35B (ENSDNOG00000033347)	ZMYM6 (ENSDNOG00000004515)	ZMYM1 (ENSDNOG00000036109)	SFPQ (ENSDNOG00000049454)	ENSDNOG00000032775 #22	ZMYM4 (ENSDNOG00000017647)	KIAA0319L (ENSDNOG00000017653)	NCDN (ENSDNOG00000017658)	TFAP2E (ENSDNOG00000036871)	PSMB2 (ENSDNOG00000017663)	C1orf216 (ENSDNOG00000017576)	CLSPN (ENSDNOG00000015628)	AGO4 (ENSDNOG00000015674)	AGO1 (ENSDNOG00000008077)	AGO3 (ENSDNOG00000008106)	TEKT2 (ENSDNOG00000040733)	ADPRS (ENSDNOG00000025495)	COL8A2 (ENSDNOG00000043920)	TRAPPC3 (ENSDNOG00000039424)	MAP7D1 (ENSDNOG00000005516)
Sloth	MODERN SPECIES	1359																FXR1 (ENSCHOG00000012877) #22
Marsupialia	ANCESTRAL SPECIES	8	ENSGT00940000153421.a.b	ENSGT00950000183039.B.b.a ##7	ENSGT00730000111202	ENSGT00940000155531.b	ENSGT00950000183039.B.a #7	ENSGT00940000156335 #9	ENSGT00390000013727.d #10	ENSGT01000000214413.b.a.a #11	ENSGT00940000156305 #12	ENSGT00390000002837 #13	ENSGT00390000009980 #14	ENSGT00940000157401 #15	ENSGT00940000155931 #17	ENSGT00390000013701 #19	ENSGT00390000015010 #20	ENSGT00950000183189.a.b.a #22	ENSGT00940000154384.h.b #23	ENSGT00940000160614 #24	ENSGT00940000156162.C.k #26	ENSGT00940000154552 #27	ENSGT00940000156941 #28	ENSGT00950000182899.C.a	ENSGT00940000161734 #32	ENSGT00940000159676 #31	ENSGT00550000074917	ENSGT00940000153783.b.b.d	ENSGT00940000161405.u	ENSGT00940000155975	ENSGT00940000158290	ENSGT01060000248592.E	ENSGT01060000248592.B
Opossum	MODERN SPECIES	6	KCNMB2 (ENSMODG00000021309) ##7	ZMAT3 (ENSMODG00000021308)	PIK3CA (ENSMODG00000021305)	KCNMB3 (ENSMODG00000021307) #7	ZNF639 (ENSMODG00000021306) #9	MFN1 (ENSMODG00000021304) #10	GNB4 (ENSMODG00000021303) #11	ACTL6A (ENSMODG00000021302) #12	ENSMODG00000041416 #13	NDUFB5 (ENSMODG00000021300) #14	USP13 (ENSMODG00000021299) #15	ENSMODG00000029313	PEX5L (ENSMODG00000021298) #17	TTC14 (ENSMODG00000021296) #19	CCDC39 (ENSMODG00000021295) #20	FXR1 (ENSMODG00000021294) #22	ENSMODG00000021293 #23	ENSMODG00000049678	ENSMODG00000028312	ENSMODG00000041249 #26	ENSMODG00000045209 #26	ENSMODG00000021291 #26	DCUN1D1 (ENSMODG00000039145) #27	MCCC1 (ENSMODG00000021288) #28	ENSMODG00000021287	MCF2L2 (ENSMODG00000021286) #32	B3GNT5 (ENSMODG00000024772) #31	RFC4 (ENSMODG00000021285)	EIF4A2 (ENSMODG00000021284)	ENSMODG00000045791	ENSMODG00000025492
Marsupialia_b	ANCESTRAL SPECIES	7	ENSGT00940000153421.a.b	ENSGT00950000183039.B.b.a ##7	ENSGT00730000111202	ENSGT00940000155531.b	ENSGT00950000183039.B.a #7	ENSGT00940000156335 #9	ENSGT00390000013727.d #10	ENSGT01000000214413.b.a.a #11	ENSGT00940000156305 #12	ENSGT00390000002837 #13	ENSGT00390000009980.j #14	ENSGT00940000157401 #15	ENSGT00940000155931 #17	ENSGT00390000013701 #19	ENSGT00390000015010 #20	ENSGT00950000183189.a.b.a #22	ENSGT00940000154384.h.b #23	ENSGT00940000160614 #24	ENSGT00940000156162.C.k #26	ENSGT00940000154552 #27	ENSGT00940000156941 #28	ENSGT00950000182899.C.a	ENSGT00940000161734 #32	ENSGT00940000159676 #31	ENSGT00550000074917	ENSGT00940000153783.b.b.d	ENSGT00940000161405.u	ENSGT00940000161405.v	ENSGT00940000158290	ENSGT01060000248592.E	ENSGT01060000248592.B
Diprotodontia	ANCESTRAL SPECIES	17	ENSGT00940000153421.a.b	ENSGT00950000183039.B.b.a ##7	ENSGT00730000111202	ENSGT00940000155531.b	ENSGT00950000183039.B.a #7	ENSGT00940000156335 #9	ENSGT00390000013727.d #10	ENSGT01000000214413.b.a.a #11	ENSGT00940000156305 #12	ENSGT00390000002837 #13	ENSGT00390000009980.j #14	ENSGT00940000157401 #15	ENSGT00940000155931 #17	ENSGT00390000013701 #19	ENSGT00390000015010 #20	ENSGT00950000183189.a.b.a #22	ENSGT00940000154384.h.b #23	ENSGT00940000160614 #24	ENSGT00940000161383.f	ENSGT00390000003897.s.b.d.a	ENSGT00530000063687.b.b.b.h	ENSGT00940000156162.C.k #26	ENSGT00940000154552 #27	ENSGT00940000156941 #28	ENSGT00940000164015 #29	ENSGT00940000161734 #32	ENSGT00940000159676 #31	ENSGT00550000074917	ENSGT00940000153783.b.b.d	ENSGT00940000161405.u	ENSGT00940000161405.v
Diprotodontia_a	ANCESTRAL SPECIES	19	ENSGT00940000153421.a.b	ENSGT00950000183039.B.b.a ##7	ENSGT00730000111202	ENSGT00940000155531.b	ENSGT00950000183039.B.a #7	ENSGT00940000156335 #9	ENSGT00390000013727.d #10	ENSGT01000000214413.b.a.a #11	ENSGT00940000156305 #12	ENSGT00390000002837 #13	ENSGT00390000009980.j #14	ENSGT00940000157401 #15	ENSGT00940000155931 #17	ENSGT00390000013701 #19	ENSGT00390000015010 #20	ENSGT00950000183189.a.b.a #22	ENSGT00940000154384.h.b #23	ENSGT00940000160614 #24	ENSGT00940000161383.f	ENSGT00390000003897.s.b.d.a	ENSGT00530000063687.b.b.b.h	ENSGT00940000156162.C.k #26	ENSGT00940000154552 #27	ENSGT00940000156941 #28	ENSGT00940000164015 #29	ENSGT00940000161734 #32	ENSGT00940000159676 #31	ENSGT00550000074917	ENSGT00940000153783.b.b.d	ENSGT00940000161405.u	ENSGT00940000161405.v
Common wonbat	MODERN SPECIES	1046	TBL1XR1 (ENSVURG00010012629)	KCNMB2 (ENSVURG00010012605) ##7	PIK3CA (ENSVURG00010012578)	KCNMB3 (ENSVURG00010012570) #7	ZNF639 (ENSVURG00010012565) #9	MFN1 (ENSVURG00010012549) #10	GNB4 (ENSVURG00010012529) #11	ACTL6A (ENSVURG00010012511) #12	MRPL47 (ENSVURG00010012499) #13	NDUFB5 (ENSVURG00010012488) #14	USP13 (ENSVURG00010012461) #15	PEX5L (ENSVURG00010012070) #17	ENSVURG00010012046 #19	ENSVURG00010012039 #19	CCDC39 (ENSVURG00010012026) #20	FXR1 (ENSVURG00010011990) #22	ENSVURG00010011974 #23	SOX2 (ENSVURG00010011967) #24	ENSVURG00010011959	ATP11B (ENSVURG00010011883) #26	DCUN1D1 (ENSVURG00010011851) #27	MCCC1 (ENSVURG00010011829) #28	ENSVURG00010011796 #29	B3GNT5 (ENSVURG00010011785) #31	ENSVURG00010011573 #32	RFC4 (ENSVURG00010011519)	EIF4A2 (ENSVURG00010011484)	ENSVURG00010011472	ENSVURG00010011466	IGSF10 (ENSVURG00010011446)	P2RY12 (ENSVURG00010011440)
koala	MODERN SPECIES	9	ZMAT3 (ENSPCIG00000034195)	ENSPCIG00000006763	PIK3CA (ENSPCIG00000006767)	KCNMB3 (ENSPCIG00000010392) #7	ZNF639 (ENSPCIG00000010395) #9	MFN1 (ENSPCIG00000006771) #10	GNB4 (ENSPCIG00000006774) #11	ACTL6A (ENSPCIG00000006777) #12	ENSPCIG00000006780 #13	ENSPCIG00000032372 #14	USP13 (ENSPCIG00000023996) #15	PEX5L (ENSPCIG00000024006) #17	TTC14 (ENSPCIG00000019438) #19	CCDC39 (ENSPCIG00000034234) #20	ENSPCIG00000019447	FXR1 (ENSPCIG00000026314) #22	ENSPCIG00000026316 #23	ATP11B (ENSPCIG00000013021) #26	DCUN1D1 (ENSPCIG00000013025) #27	MCCC1 (ENSPCIG00000013027) #28	ENSPCIG00000013028 #29	ENSPCIG00000013031 #32	B3GNT5 (ENSPCIG00000013050) #31	RFC4 (ENSPCIG00000013051)	EIF4A2 (ENSPCIG00000013057)	ENSPCIG00000013070	ENSPCIG00000013092	IGSF10 (ENSPCIG00000013094)	MED12L (ENSPCIG00000013099)	P2RY12 (ENSPCIG00000013161)	P2RY13 (ENSPCIG00000013162)
Wallaby	MODERN SPECIES	2330																FXR1 (ENSMEUG00000004706) #22
Tasmanian devil	MODERN SPECIES	2	TBL1XR1 (ENSSHAG00000005700)	KCNMB2 (ENSSHAG00000027317) ##7	ZMAT3 (ENSSHAG00000016154)	PIK3CA (ENSSHAG00000016406)	KCNMB3 (ENSSHAG00000016520) #7	ZNF639 (ENSSHAG00000016769) #9	MFN1 (ENSSHAG00000016834) #10	GNB4 (ENSSHAG00000016950) #11	ACTL6A (ENSSHAG00000017237) #12	MRPL47 (ENSSHAG00000017273) #13	NDUFB5 (ENSSHAG00000021190) #14	USP13 (ENSSHAG00000017431) #15	PEX5L (ENSSHAG00000017604) #17	TTC14 (ENSSHAG00000018408) #19	CCDC39 (ENSSHAG00000018433) #20	FXR1 (ENSSHAG00000018625) #22	ENSSHAG00000018671 #23	SOX2 (ENSSHAG00000020580) #24	ATP11B (ENSSHAG00000015543) #26	DCUN1D1 (ENSSHAG00000015925) #27	MCCC1 (ENSSHAG00000016104) #28	ENSSHAG00000016243	ENSSHAG00000016433 #32	ENSSHAG00000031434 #31	ENSSHAG00000017071	ENSSHAG00000017081	ENSSHAG00000023713	ENSSHAG00000017283	IGSF10 (ENSSHAG00000017493)	ENSSHAG00000017538	P2RY12 (ENSSHAG00000022919)
Platypus	MODERN SPECIES		ENSOANG00000001673	KCNMB2 (ENSOANG00000040015) ##7	ZMAT3 (ENSOANG00000009901)	PIK3CA (ENSOANG00000013922)	KCNMB3 (ENSOANG00000013923) #7	ZNF639 (ENSOANG00000012679) #9	MFN1 (ENSOANG00000004694) #10	GNB4 (ENSOANG00000004695) #11	ACTL6A (ENSOANG00000044256) #12	MRPL47 (ENSOANG00000002137) #13	ENSOANG00000021730 #14	USP13 (ENSOANG00000050467) #15	PEX5L (ENSOANG00000041655) #17	TTC14 (ENSOANG00000003676) #19	CCDC39 (ENSOANG00000020027) #20	FXR1 (ENSOANG00000011045) #22	DNAJC19 (ENSOANG00000011044) #23	ENSOANG00000011256 ##26	ENSOANG00000045472 ##26	DCUN1D1 (ENSOANG00000011254) #27	MCCC1 (ENSOANG00000011253) #28	ENSOANG00000011252	ENSOANG00000050093 #32	B3GNT5 (ENSOANG00000009184) #31	RFC4 (ENSOANG00000048018)	EIF4A2 (ENSOANG00000042142)	ENSOANG00000043705	ENSOANG00000042947	ENSOANG00000036092	AHSG (ENSOANG00000046335)	FARSB (ENSOANG00000015387)
Sauria	ANCESTRAL SPECIES	9	ENSGT00950000183039.B.b.a ##7	ENSGT00730000111202	ENSGT00940000155531.b	ENSGT01030000235369	ENSGT00940000156335 #9	ENSGT00390000013727.d #10	ENSGT01000000214413.b.a.a #11	ENSGT00940000156305 #12	ENSGT00390000002837 #13	ENSGT00390000009980 #14	ENSGT00940000157401 #15	ENSGT00940000155931 #17	ENSGT00390000013701 #19	ENSGT00960000190572	ENSGT00390000015010 #20	ENSGT00950000183189.a.b.a #22	ENSGT00940000154384 #23	ENSGT00940000160614 #24	ENSGT00940000156162.C #26	ENSGT00940000154552 #27	ENSGT00940000156941 #28	ENSGT00950000182899.C.a	ENSGT00940000161734 #32	ENSGT00940000159676 #31	ENSGT00550000074917	ENSGT00940000153783.b.b.d	ENSGT00950000182930.B	ENSGT00950000182930.A.a	ENSGT00950000182930.A.b	ENSGT00950000182930.C	ENSGT00940000159865
Lepidosauria	ANCESTRAL SPECIES	12	ENSGT00950000183039.B.b.a ##7	ENSGT00730000111202	ENSGT00940000155531.b	ENSGT01030000235369	ENSGT00940000156335 #9	ENSGT00390000013727.d #10	ENSGT01000000214413.b.a.a #11	ENSGT00940000156305 #12	ENSGT00390000002837 #13	ENSGT00390000009980 #14	ENSGT00940000157401 #15	ENSGT00940000155931 #17	ENSGT00390000013701 #19	ENSGT00960000190572	ENSGT00390000015010 #20	ENSGT00950000183189.a.b.a #22	ENSGT00940000154384 #23	ENSGT00940000160614 #24	ENSGT00940000156162.C #26	ENSGT00940000154552 #27	ENSGT00940000156941 #28	ENSGT00950000182899.C.a	ENSGT00940000164015 #29	ENSGT00940000159676 #31	ENSGT00940000161734 #32	ENSGT00550000074917	ENSGT00940000153783.b.b.d	ENSGT00950000182930.B	ENSGT00950000182930.A.a	ENSGT00950000182930.A.b	ENSGT00950000182930.C
Episquamata	ANCESTRAL SPECIES	2	ENSGT00730000111202	ENSGT00940000155531.b	ENSGT01030000235369	ENSGT00940000156335 #9	ENSGT00390000013727.d #10	ENSGT01000000214413.b.a.a #11	ENSGT00390000011515	ENSGT00940000156305 #12	ENSGT00390000002837 #13	ENSGT00390000009980 #14	ENSGT00940000157401 #15	ENSGT00940000155931 #17	ENSGT00390000013701 #19	ENSGT00960000190572	ENSGT00390000015010 #20	ENSGT00950000183189.a.b.a #22	ENSGT00940000154384 #23	ENSGT00940000160614 #24	ENSGT00940000156162.C #26	ENSGT00940000154552 #27	ENSGT00940000156941 #28	ENSGT00950000182899.C.a	ENSGT00940000164015 #29	ENSGT00940000159676 #31	ENSGT00940000161734 #32	ENSGT00550000074917	ENSGT00940000153783.b.b.d	ENSGT00950000182930.B	ENSGT00950000182930.A.a	ENSGT00950000182930.A.b	ENSGT00950000182930.C
Toxicofera	ANCESTRAL SPECIES	2	ENSGT00730000111202	ENSGT00940000155531.b	ENSGT01030000235369	ENSGT00940000156335 #9	ENSGT00390000013727.d #10	ENSGT01000000214413.b.a.a #11	ENSGT00390000011515	ENSGT00940000156305 #12	ENSGT00390000002837 #13	ENSGT00390000009980 #14	ENSGT00940000157401 #15	ENSGT00940000155931 #17	ENSGT00390000013701 #19	ENSGT00960000190572	ENSGT00390000015010 #20	ENSGT00950000183189.a.b.a #22	ENSGT00940000154384 #23	ENSGT00940000160614 #24	ENSGT00940000156162.C #26	ENSGT00940000154552 #27	ENSGT00940000156941 #28	ENSGT00950000182899.C.a	ENSGT00940000161734 #32	ENSGT00940000159676 #31	ENSGT01030000237363	ENSGT00550000074917	ENSGT00940000153783.b.b.d	ENSGT00950000182930.B.m	ENSGT00950000182930.A.a	ENSGT00950000182930.A.b	ENSGT00950000182930.C
Elapidae	ANCESTRAL SPECIES	4	ENSGT00730000111202	ENSGT00940000155531.b	ENSGT01030000235369	ENSGT00940000156335 #9	ENSGT00390000013727.d #10	ENSGT01000000214413.b.a.a #11	ENSGT00390000011515	ENSGT00940000156305 #12	ENSGT00390000002837 #13	ENSGT00390000009980 #14	ENSGT00940000157401 #15	ENSGT00940000155931 #17	ENSGT00390000013701 #19	ENSGT00960000190572	ENSGT00390000015010 #20	ENSGT00950000183189.a.b.a #22	ENSGT00940000154384 #23	ENSGT00940000160614 #24	ENSGT00940000156162.C #26	ENSGT00940000154552 #27	ENSGT00940000156941 #28	ENSGT00950000182899.C.a	ENSGT00940000159676 #31	ENSGT00940000161734 #32	ENSGT01030000237363	ENSGT00550000074917	ENSGT00940000153783.b.b.d	ENSGT00950000182930.B.m	ENSGT00950000182930.B.n	ENSGT00950000182930.A.b.i.a
Indian cobra	MODERN SPECIES	3	ENSNNAG00000007631	ZMAT3 (ENSNNAG00000007645)	PIK3CA (ENSNNAG00000007680)	ZNF639 (ENSNNAG00000007836) #9	MFN1 (ENSNNAG00000007861) #10	GNB4 (ENSNNAG00000007920) #11	NIFK (ENSNNAG00000007941)	ACTL6A (ENSNNAG00000007971) #12	MRPL47 (ENSNNAG00000008025) #13	NDUFB5 (ENSNNAG00000008239) #14	USP13 (ENSNNAG00000008293) #15	PEX5L (ENSNNAG00000008347) #17	TTC14 (ENSNNAG00000008565) #19	ENSNNAG00000008598	CCDC39 (ENSNNAG00000008649) #20	FXR1 (ENSNNAG00000008767) #22	DNAJC19 (ENSNNAG00000010510) #23	SOX2 (ENSNNAG00000010554) #24	ATP11B (ENSNNAG00000010604) #26	DCUN1D1 (ENSNNAG00000011093) #27	MCCC1 (ENSNNAG00000011141) #28	ENSNNAG00000011193	MCF2L2 (ENSNNAG00000011227) #32	B3GNT5 (ENSNNAG00000011392) #31	ENSNNAG00000011403	RFC4 (ENSNNAG00000011428)	EIF4A2 (ENSNNAG00000011460)	KNG1 (ENSNNAG00000011576)	ENSNNAG00000011641	ENSNNAG00000011657	ENSNNAG00000011677
Elapidae_a	ANCESTRAL SPECIES		ENSGT00730000111202	ENSGT00940000155531.b	ENSGT01030000235369	ENSGT00940000156335 #9	ENSGT00390000013727.d #10	ENSGT01000000214413.b.a.a #11	ENSGT00390000011515	ENSGT00940000156305 #12	ENSGT00390000002837 #13	ENSGT00390000009980 #14	ENSGT00940000157401 #15	ENSGT00940000155931 #17	ENSGT00390000013701 #19	ENSGT00960000190572	ENSGT00390000015010 #20	ENSGT00950000183189.a.b.a #22	ENSGT00940000154384 #23	ENSGT00940000160614 #24	ENSGT00940000156162.C #26	ENSGT00940000154552 #27	ENSGT00940000156941 #28	ENSGT00950000182899.C.a	ENSGT00940000164015 #29	ENSGT00940000159676 #31	ENSGT00940000161734 #32	ENSGT01030000237363	ENSGT00550000074917	ENSGT00940000153783.b.b.d	ENSGT00950000182930.B.m
Acanthophiinae	ANCESTRAL SPECIES	1	ENSGT00730000111202	ENSGT00940000155531.b	ENSGT01030000235369	ENSGT00940000156335 #9	ENSGT00390000013727.d #10	ENSGT01000000214413.b.a.a #11	ENSGT00390000011515	ENSGT00940000156305 #12	ENSGT00390000002837 #13	ENSGT00390000009980 #14	ENSGT00940000157401 #15	ENSGT00940000155931 #17	ENSGT00390000013701 #19	ENSGT00960000190572	ENSGT00390000015010 #20	ENSGT00950000183189.a.b.a #22	ENSGT00940000154384 #23	ENSGT00940000160614 #24	ENSGT00940000156162.C #26	ENSGT00940000154552 #27	ENSGT00940000156941 #28	ENSGT00950000182899.C.a	ENSGT00940000164015 #29	ENSGT00940000159676 #31	ENSGT00940000161734 #32	ENSGT01030000237363	ENSGT00550000074917	ENSGT00940000153783.b.b.d	ENSGT00950000182930.B.m
Eastern brown snake	MODERN SPECIES	29	KCNMB2 (ENSPTXG00000017809) ##7	ZMAT3 (ENSPTXG00000017808)	PIK3CA (ENSPTXG00000017806)	ZNF639 (ENSPTXG00000017805) #9	MFN1 (ENSPTXG00000017761) #10	GNB4 (ENSPTXG00000017756) #11	NIFK (ENSPTXG00000017754)	ACTL6A (ENSPTXG00000017752) #12	MRPL47 (ENSPTXG00000017751) #13	NDUFB5 (ENSPTXG00000017750) #14	USP13 (ENSPTXG00000017659) #15	PEX5L (ENSPTXG00000017655) #17	TTC14 (ENSPTXG00000017654) #19	ENSPTXG00000017653	ENSPTXG00000017651 #20	FXR1 (ENSPTXG00000017650) #22	DNAJC19 (ENSPTXG00000017649) #23	SOX2 (ENSPTXG00000017648) #24	ENSPTXG00000017647	ATP11B (ENSPTXG00000017645) #26	DCUN1D1 (ENSPTXG00000017644) #27	MCCC1 (ENSPTXG00000017643) #28	LAMP3 (ENSPTXG00000017642) #29	B3GNT5 (ENSPTXG00000017641) #31	MCF2L2 (ENSPTXG00000017640) #32	ENSPTXG00000017639 #32	ENSPTXG00000017637	RFC4 (ENSPTXG00000017636)	EIF4A2 (ENSPTXG00000017631)	ENSPTXG00000017630
Mainland tiger snake	MODERN SPECIES		ENSNSUG00000003919	ZMAT3 (ENSNSUG00000003923)	PIK3CA (ENSNSUG00000003932)	ENSNSUG00000004425	ZNF639 (ENSNSUG00000004427) #9	MFN1 (ENSNSUG00000004432) #10	GNB4 (ENSNSUG00000004440) #11	NIFK (ENSNSUG00000004538)	ACTL6A (ENSNSUG00000004551) #12	MRPL47 (ENSNSUG00000004553) #13	NDUFB5 (ENSNSUG00000004556) #14	USP13 (ENSNSUG00000004559) #15	PEX5L (ENSNSUG00000004565) #17	TTC14 (ENSNSUG00000004573) #19	CCDC39 (ENSNSUG00000004589) #20	FXR1 (ENSNSUG00000004596) #22	DNAJC19 (ENSNSUG00000004600) #23	SOX2 (ENSNSUG00000004653) #24
Blue-lipped sea krait	MODERN SPECIES	157																FXR1 (ENSLLTG00000004144) #22	DNAJC19 (ENSLLTG00000003835) #23
Lizard	MODERN SPECIES	2	PIK3CA (ENSACAG00000004872)	ZNF639 (ENSACAG00000044413) #9	MFN1 (ENSACAG00000004702) #10	GNB4 (ENSACAG00000004667) #11	ENSACAG00000004655	ENSACAG00000044517	ACTL6A (ENSACAG00000004548) #12	MRPL47 (ENSACAG00000043862) #13	NDUFB5 (ENSACAG00000004465) #14	USP13 (ENSACAG00000004318) #15	PEX5L (ENSACAG00000004210) #17	TTC14 (ENSACAG00000004108) #19	ENSACAG00000044880	ENSACAG00000040084	CCDC39 (ENSACAG00000004063) #20	FXR1 (ENSACAG00000003918) #22	DNAJC19 (ENSACAG00000003917) #23	ENSACAG00000042518	ENSACAG00000040070	ENSACAG00000038324	ATP11B (ENSACAG00000007250) #26	DCUN1D1 (ENSACAG00000007413) #27	MCCC1 (ENSACAG00000007450) #28	ENSACAG00000007500	ENSACAG00000029191	B3GNT5 (ENSACAG00000007633) #31	MCF2L2 (ENSACAG00000007515) #32
Laterata	ANCESTRAL SPECIES		ENSGT00730000111202	ENSGT00940000155531.b	ENSGT01030000235369	ENSGT00940000156335 #9	ENSGT00390000013727.d #10	ENSGT01000000214413.b.a.a #11	ENSGT00390000011515	ENSGT00940000156305 #12	ENSGT00390000002837 #13	ENSGT00390000009980 #14	ENSGT00940000157401 #15	ENSGT00940000155931 #17	ENSGT00390000013701 #19	ENSGT00960000190572	ENSGT00390000015010 #20	ENSGT00950000183189.a.b.a #22	ENSGT00940000154384 #23	ENSGT00940000156162.C #26	ENSGT00940000154552 #27	ENSGT00940000156941 #28	ENSGT00940000164015 #29	ENSGT00940000159676 #31	ENSGT00940000161734 #32	ENSGT00550000074917	ENSGT00940000153783.b.b.d	ENSGT00950000182930.B	ENSGT00950000182930.A.a	ENSGT00950000182930.A.b	ENSGT00950000182930.C	ENSGT00940000159865	ENSGT00940000158024.C
Common wall lizard	MODERN SPECIES	13	ENSPMRG00000003204	ZNF639 (ENSPMRG00000003214) #9	MFN1 (ENSPMRG00000003386) #10	GNB4 (ENSPMRG00000003918) #11	ENSPMRG00000003923	NIFK (ENSPMRG00000003928)	ACTL6A (ENSPMRG00000003934) #12	ENSPMRG00000003959 #13	ENSPMRG00000003984 #13	NDUFB5 (ENSPMRG00000003995) #14	ENSPMRG00000004003	USP13 (ENSPMRG00000004010) #15	PEX5L (ENSPMRG00000004041) #17	ENSPMRG00000004145	CCDC39 (ENSPMRG00000004156) #20	FXR1 (ENSPMRG00000004189) #22	ENSPMRG00000004207	DNAJC19 (ENSPMRG00000004217) #23	ENSPMRG00000004232	ENSPMRG00000004270 #26	ENSPMRG00000004385 #26	DCUN1D1 (ENSPMRG00000004392) #27	MCCC1 (ENSPMRG00000004403) #28	ENSPMRG00000004426	ENSPMRG00000004431	MCF2L2 (ENSPMRG00000004546) #32	B3GNT5 (ENSPMRG00000005015) #31	RFC4 (ENSPMRG00000005025)	EIF4A2 (ENSPMRG00000005043)	KNG1 (ENSPMRG00000005067)	ENSPMRG00000005082
Argentine black and white tegu	MODERN SPECIES	21	ENSSMRG00000023621	ZNF639 (ENSSMRG00000023620) #9	MFN1 (ENSSMRG00000023619) #10	ENSSMRG00000023618 ##11	ENSSMRG00000023617 #11	NIFK (ENSSMRG00000023616)	ACTL6A (ENSSMRG00000023614) #12	MRPL47 (ENSSMRG00000023613) #13	NDUFB5 (ENSSMRG00000023612) #14	USP13 (ENSSMRG00000023611) #15	PEX5L (ENSSMRG00000023610) #17	ENSSMRG00000023609	TTC14 (ENSSMRG00000023608) #19	ENSSMRG00000023607	CCDC39 (ENSSMRG00000023606) #20	FXR1 (ENSSMRG00000023605) #22	DNAJC19 (ENSSMRG00000023604) #23	ENSSMRG00000023601	ATP11B (ENSSMRG00000023598) #26	DCUN1D1 (ENSSMRG00000023597) #27	MCCC1 (ENSSMRG00000023596) #28	ENSSMRG00000023595 #29	B3GNT5 (ENSSMRG00000023593) #31	MCF2L2 (ENSSMRG00000023592) #32	RFC4 (ENSSMRG00000023591)	EIF4A2 (ENSSMRG00000023586)	KNG1 (ENSSMRG00000023585)	ENSSMRG00000023583	FETUB (ENSSMRG00000023582)	AHSG (ENSSMRG00000023581)	ENSSMRG00000023580
tuatara	MODERN SPECIES	1534	TBL1XR1 (ENSSPUG00000014823)	KCNMB2 (ENSSPUG00000014799) ##7	ZMAT3 (ENSSPUG00000014753)	PIK3CA (ENSSPUG00000014720)	ZNF639 (ENSSPUG00000014710) #9	MFN1 (ENSSPUG00000014691) #10	GNB4 (ENSSPUG00000014672) #11	ACTL6A (ENSSPUG00000014641) #12	MRPL47 (ENSSPUG00000014635) #13	NDUFB5 (ENSSPUG00000014622) #14	USP13 (ENSSPUG00000014601) #15	PEX5L (ENSSPUG00000014580) #17	ENSSPUG00000014567 #19	ENSSPUG00000014559 #19	CCDC39 (ENSSPUG00000014545) #20	FXR1 (ENSSPUG00000014501) #22	DNAJC19 (ENSSPUG00000014476) #23	ENSSPUG00000014466	SOX2 (ENSSPUG00000014432) #24	ENSSPUG00000014421 #26	ENSSPUG00000014405 #26	ENSSPUG00000014393 #26	DCUN1D1 (ENSSPUG00000014386) #27	MCCC1 (ENSSPUG00000014366) #28	ENSSPUG00000014354	MCF2L2 (ENSSPUG00000014254) #32	RFC4 (ENSSPUG00000014211)	EIF4A2 (ENSSPUG00000014154)	AHSG (ENSSPUG00000014094)	SENP5 (ENSSPUG00000014067)	EPHB3 (ENSSPUG00000014042)
Archelosauria	ANCESTRAL SPECIES	11	ENSGT00950000183039.B.b.a ##7	ENSGT00730000111202	ENSGT00940000155531.b	ENSGT01030000235369.a	ENSGT00940000156335 #9	ENSGT00390000013727.d #10	ENSGT01000000214413.b.a.a #11	ENSGT00940000156305 #12	ENSGT00390000002837 #13	ENSGT00390000009980 #14	ENSGT00940000157401 #15	ENSGT00940000155931 #17	ENSGT00390000013701 #19	ENSGT00960000190572	ENSGT00390000015010 #20	ENSGT00950000183189.a.b.a #22	ENSGT00940000154384 #23	ENSGT00940000160614 #24	ENSGT00940000156162.C #26	ENSGT00940000154552 #27	ENSGT00940000156941 #28	ENSGT00950000182899.C.a	ENSGT00940000161734 #32	ENSGT00940000159676 #31	ENSGT00990000203899	ENSGT00550000074917	ENSGT00940000153783.b.b.d	ENSGT00950000182930.B	ENSGT00950000182930.A.a	ENSGT00950000182930.A.b	ENSGT00950000182930.C
Archosauria	ANCESTRAL SPECIES	10	ENSGT00940000153421.a.b	ENSGT00950000183039.B.b.a ##7	ENSGT00730000111202	ENSGT00940000155531.b	ENSGT00940000156335 #9	ENSGT00390000013727.d #10	ENSGT01000000214413.b.a.a #11	ENSGT00940000156305 #12	ENSGT00390000002837 #13	ENSGT00390000009980 #14	ENSGT00940000157401 #15	ENSGT00940000155931 #17	ENSGT00390000013701 #19	ENSGT00960000190572	ENSGT00390000015010 #20	ENSGT00950000183189.a.b.a #22	ENSGT00940000154384 #23	ENSGT00940000160614 #24	ENSGT00940000156162.C #26	ENSGT00940000154552 #27	ENSGT00940000156941 #28	ENSGT00950000182899.C.a	ENSGT00940000161734 #32	ENSGT00940000159676 #31	ENSGT00990000203899	ENSGT00550000074917	ENSGT00940000153783.b.b.d	ENSGT00950000182930.B	ENSGT00950000182930.A.a	ENSGT00950000182930.A.b	ENSGT00950000182930.C
Aves	ANCESTRAL SPECIES	13	ENSGT01030000234598.a.b	ENSGT00940000153421.a.b	ENSGT00950000183039.B.b.a ##7	ENSGT00730000111202	ENSGT00940000155531.b	ENSGT00940000156335 #9	ENSGT00390000013727.d #10	ENSGT01000000214413.b.a.a #11	ENSGT00940000156305 #12	ENSGT00390000002837 #13	ENSGT00390000009980 #14	ENSGT00940000157401 #15	ENSGT00940000155931 #17	ENSGT00390000013701 #19	ENSGT00390000015010 #20	ENSGT00950000183189.a.b.a #22	ENSGT00940000154384 #23	ENSGT00940000160614 #24	ENSGT00940000156162.C #26	ENSGT00940000154552 #27	ENSGT00940000156941 #28	ENSGT00950000182899.C.a	ENSGT00940000161734 #32	ENSGT00940000159676 #31	ENSGT00990000203899	ENSGT00550000074917	ENSGT00940000153783.b.b.d	ENSGT00950000182930.B	ENSGT00950000182930.A.a	ENSGT00950000182930.A.b	ENSGT00950000182930.C
Neognathae	ANCESTRAL SPECIES	9	ENSGT01030000234598.a.b	ENSGT00940000153421.a.b	ENSGT00950000183039.B.b.a ##7	ENSGT00730000111202	ENSGT00940000155531.b	ENSGT00940000156335 #9	ENSGT00390000013727.d #10	ENSGT01000000214413.b.a.a #11	ENSGT00940000156305 #12	ENSGT00390000002837 #13	ENSGT00390000009980 #14	ENSGT00940000157401 #15	ENSGT00940000155931 #17	ENSGT00390000013701 #19	ENSGT00390000015010 #20	ENSGT00950000183189.a.b.a #22	ENSGT00940000154384 #23	ENSGT00940000160614 #24	ENSGT00940000156162.C #26	ENSGT00940000154552 #27	ENSGT00940000156941 #28	ENSGT00950000182899.C.a	ENSGT00940000161734 #32	ENSGT00940000159676 #31	ENSGT00990000203899	ENSGT00550000074917	ENSGT00940000153783.b.b.d	ENSGT00950000182930.B	ENSGT00950000182930.A.a	ENSGT00950000182930.A.b	ENSGT00950000182930.C
Galloanserae	ANCESTRAL SPECIES	16	ENSGT01030000234598.a.b	ENSGT00940000153421.a.b	ENSGT00950000183039.B.b.a ##7	ENSGT00730000111202	ENSGT00940000155531.b	ENSGT00940000156335 #9	ENSGT00390000013727.d #10	ENSGT01000000214413.b.a.a #11	ENSGT00940000156305 #12	ENSGT00390000002837 #13	ENSGT00390000009980 #14	ENSGT00940000157401 #15	ENSGT00940000155931 #17	ENSGT00390000013701 #19	ENSGT00390000015010 #20	ENSGT00950000183189.a.b.a #22	ENSGT00940000154384 #23	ENSGT00940000160614 #24	ENSGT00940000156162.C #26	ENSGT00940000154552 #27	ENSGT00940000156941 #28	ENSGT00950000182899.C.a	ENSGT00940000159676 #31	ENSGT00990000203899	ENSGT00940000161734 #32	ENSGT00550000074917	ENSGT00940000153783.b.b.d	ENSGT00950000182930.B	ENSGT00950000182930.A.a	ENSGT00950000182930.A.b	ENSGT00950000182930.C
Anatidae	ANCESTRAL SPECIES	31	ENSGT01030000234598.a.b	ENSGT00940000153421.a.b	ENSGT00950000183039.B.b.a ##7	ENSGT00730000111202	ENSGT00940000155531.b	ENSGT00940000156335 #9	ENSGT00390000013727.d #10	ENSGT01000000214413.b.a.a #11	ENSGT00940000156305 #12	ENSGT00390000002837 #13	ENSGT00390000009980 #14	ENSGT00940000157401 #15	ENSGT00940000155931 #17	ENSGT00390000013701 #19	ENSGT00390000015010 #20	ENSGT00950000183189.a.b.a #22	ENSGT00940000154384 #23	ENSGT00940000156162.C #26	ENSGT00940000154552 #27	ENSGT00940000156941 #28	ENSGT00950000182899.C.a	ENSGT00940000159676 #31	ENSGT00940000161734 #32	ENSGT00550000074917	ENSGT00940000153783.b.b.d	ENSGT00950000182930.B	ENSGT00950000182930.A.b	ENSGT00950000182930.C	ENSGT00940000159865	ENSGT00940000158024.C	ENSGT00390000018195
Pink-footed goose	MODERN SPECIES	191															ENSABRG00000004575 #20	FXR1 (ENSABRG00000004611) #22	DNAJC19 (ENSABRG00000004667) #23	ENSABRG00000004678	ATP11B (ENSABRG00000004951) #26	DCUN1D1 (ENSABRG00000008477) #27	MCCC1 (ENSABRG00000008569) #28	ENSABRG00000009263	MCF2L2 (ENSABRG00000009315) #32	B3GNT5 (ENSABRG00000009423) #31	ENSABRG00000009427	RFC4 (ENSABRG00000009440)	EIF4A2 (ENSABRG00000009508)	KNG1 (ENSABRG00000010063)	FETUB (ENSABRG00000010071)	AHSG (ENSABRG00000010086)	SENP5 (ENSABRG00000010116)
Duck	MODERN SPECIES	27	NLGN1 (ENSAPLG00000010082)	NAALADL2 (ENSAPLG00000010077)	TBL1XR1 (ENSAPLG00000013445)	KCNMB2 (ENSAPLG00000020595) ##7	ZMAT3 (ENSAPLG00000013292)	PIK3CA (ENSAPLG00000012924)	ZNF639 (ENSAPLG00000012914) #9	MFN1 (ENSAPLG00000012500) #10	GNB4 (ENSAPLG00000012235) #11	ACTL6A (ENSAPLG00000011809) #12	MRPL47 (ENSAPLG00000011793) #13	USP13 (ENSAPLG00000011239) #15	PEX5L (ENSAPLG00000011193) #17	TTC14 (ENSAPLG00000010921) #19	CCDC39 (ENSAPLG00000010760) #20	FXR1 (ENSAPLG00000010032) #22	DNAJC19 (ENSAPLG00000009956) #23	ATP11B (ENSAPLG00000009719) #26	DCUN1D1 (ENSAPLG00000009496) #27	MCCC1 (ENSAPLG00000008989) #28	ENSAPLG00000021030	B3GNT5 (ENSAPLG00000000814) #31	MCF2L2 (ENSAPLG00000007943) #32	RFC4 (ENSAPLG00000007380)	EIF4A2 (ENSAPLG00000006751)	KNG1 (ENSAPLG00000006515)	FETUB (ENSAPLG00000006369)	AHSG (ENSAPLG00000006249)	SENP5 (ENSAPLG00000005903)	EPHB3 (ENSAPLG00000009704)	ENSAPLG00000025180
Phasianidae	ANCESTRAL SPECIES	9	ENSGT01030000234598.a.b	ENSGT00940000153421.a.b	ENSGT00950000183039.B.b.a ##7	ENSGT00730000111202	ENSGT00940000155531.b	ENSGT00940000156335 #9	ENSGT00390000013727.d #10	ENSGT01000000214413.b.a.a #11	ENSGT00940000156305 #12	ENSGT00390000002837 #13	ENSGT00390000009980 #14	ENSGT00940000157401 #15	ENSGT00940000155931 #17	ENSGT00390000013701 #19	ENSGT00390000015010 #20	ENSGT00950000183189.a.b.a #22	ENSGT00940000154384.e #23	ENSGT00940000160614 #24	ENSGT00940000156162.C #26	ENSGT00940000154552 #27	ENSGT00940000156941 #28	ENSGT00950000182899.C.a	ENSGT00940000159676 #31	ENSGT00990000203899	ENSGT00940000161734 #32	ENSGT00550000074917	ENSGT00940000153783.b.b.d	ENSGT00950000182930.B	ENSGT00950000182930.A.a	ENSGT00950000182930.A.b	ENSGT00950000182930.C
Japanese quail	MODERN SPECIES	27	NAALADL2 (ENSCJPG00005014265)	TBL1XR1 (ENSCJPG00005014262)	KCNMB2 (ENSCJPG00005014256) ##7	ZMAT3 (ENSCJPG00005014255)	PIK3CA (ENSCJPG00005014254)	ZNF639 (ENSCJPG00005014253) #9	MFN1 (ENSCJPG00005014252) #10	GNB4 (ENSCJPG00005014251) #11	ACTL6A (ENSCJPG00005014250) #12	MRPL47 (ENSCJPG00005014249) #13	NDUFB5 (ENSCJPG00005014248) #14	USP13 (ENSCJPG00005014247) #15	PEX5L (ENSCJPG00005014246) #17	TTC14 (ENSCJPG00005014245) #19	CCDC39 (ENSCJPG00005014244) #20	FXR1 (ENSCJPG00005014242) #22	DNAJC19 (ENSCJPG00005014236) #23	SOX2 (ENSCJPG00005014232) #24	ATP11B (ENSCJPG00005014227) #26	DCUN1D1 (ENSCJPG00005014226) #27	MCCC1 (ENSCJPG00005014225) #28	ENSCJPG00005014224	B3GNT5 (ENSCJPG00005014223) #31	MCF2L2 (ENSCJPG00005013794) #32	ENSCJPG00005013793	RFC4 (ENSCJPG00005013792)	EIF4A2 (ENSCJPG00005013788)	KNG1 (ENSCJPG00005013787)	ENSCJPG00005013786	FETUB (ENSCJPG00005013785)	AHSG (ENSCJPG00005013784)
Phasianidae_b	ANCESTRAL SPECIES	12	ENSGT01030000234598.a.b	ENSGT00940000153421.a.b	ENSGT00950000183039.B.b.a ##7	ENSGT00730000111202	ENSGT00940000155531.b	ENSGT00940000156335 #9	ENSGT00390000013727.d #10	ENSGT01000000214413.b.a.a #11	ENSGT00940000156305 #12	ENSGT00390000002837 #13	ENSGT00390000009980 #14	ENSGT00940000157401 #15	ENSGT00940000155931 #17	ENSGT00390000013701 #19	ENSGT00390000015010 #20	ENSGT00950000183189.a.b.a #22	ENSGT00940000154384.e #23	ENSGT00940000160614 #24	ENSGT00940000156162.C #26	ENSGT00940000154552 #27	ENSGT00940000156941 #28	ENSGT00950000182899.C.a	ENSGT00940000159676 #31	ENSGT00990000203899	ENSGT00940000161734 #32	ENSGT00550000074917	ENSGT00940000153783.b.b.d	ENSGT00950000182930.B	ENSGT00950000182930.A.a	ENSGT00950000182930.A.b	ENSGT00950000182930.C
Chicken	MODERN SPECIES	38	NAALADL2 (ENSGALG00010018465)	TBL1XR1 (ENSGALG00010018396)	KCNMB2 (ENSGALG00010018349) ##7	ZMAT3 (ENSGALG00010018317)	PIK3CA (ENSGALG00010018296)	ZNF639 (ENSGALG00010018275) #9	MFN1 (ENSGALG00010018255) #10	GNB4 (ENSGALG00010018185) #11	ACTL6A (ENSGALG00010018172) #12	MRPL47 (ENSGALG00010018143) #13	NDUFB5 (ENSGALG00010018137) #14	USP13 (ENSGALG00010018123) #15	PEX5L (ENSGALG00010018055) #17	TTC14 (ENSGALG00010018039) #19	CCDC39 (ENSGALG00010018026) #20	FXR1 (ENSGALG00010016652) #22	DNAJC19 (ENSGALG00010016614) #23	SOX2 (ENSGALG00010016609) #24	ATP11B (ENSGALG00010016588) #26	DCUN1D1 (ENSGALG00010016529) #27	MCCC1 (ENSGALG00010016475) #28	LAMP3 (ENSGALG00010016456)	B3GNT5 (ENSGALG00010016431) #31	MCF2L2 (ENSGALG00010016355) #32	RFC4 (ENSGALG00010016270)	EIF4A2 (ENSGALG00010016240)	KNG1 (ENSGALG00010016206)	ENSGALG00010016177	FETUB (ENSGALG00010016119)	AHSG (ENSGALG00010016067)	ENSGALG00010016041
Turkey	MODERN SPECIES	2	TBL1XR1 (ENSMGAG00000009892)	ENSMGAG00000021926	KCNMB2 (ENSMGAG00000009882) ##7	ZMAT3 (ENSMGAG00000009873)	PIK3CA (ENSMGAG00000009828)	ZNF639 (ENSMGAG00000009823) #9	MFN1 (ENSMGAG00000009801) #10	GNB4 (ENSMGAG00000002359) #11	ACTL6A (ENSMGAG00000009756) #12	NDUFB5 (ENSMGAG00000009730) #14	MRPL47 (ENSMGAG00000020958) #13	USP13 (ENSMGAG00000009725) #15	PEX5L (ENSMGAG00000009710) #17	TTC14 (ENSMGAG00000009680) #19	CCDC39 (ENSMGAG00000009659) #20	FXR1 (ENSMGAG00000009602) #22	ENSMGAG00000021069 #23	ATP11B (ENSMGAG00000009540) #26	DCUN1D1 (ENSMGAG00000009535) #27	MCCC1 (ENSMGAG00000009494) #28	ENSMGAG00000009487	B3GNT5 (ENSMGAG00000016047) #31	ENSMGAG00000020114	MCF2L2 (ENSMGAG00000009434) #32	RFC4 (ENSMGAG00000009412)	EIF4A2 (ENSMGAG00000009383)	ENSMGAG00000019935	ENSMGAG00000023000	FETUB (ENSMGAG00000009336)	AHSG (ENSMGAG00000009326)	ENSMGAG00000009313
Neognathae_b	ANCESTRAL SPECIES	11	ENSGT01030000234598.a.b	ENSGT00940000153421.a.b	ENSGT00950000183039.B.b.a ##7	ENSGT00730000111202	ENSGT00940000155531.b	ENSGT00940000156335 #9	ENSGT00390000013727.d #10	ENSGT01000000214413.b.a.a #11	ENSGT00940000156305 #12	ENSGT00390000002837 #13	ENSGT00390000009980 #14	ENSGT00940000157401 #15	ENSGT00940000155931 #17	ENSGT00390000013701 #19	ENSGT00390000015010 #20	ENSGT00950000183189.a.b.a #22	ENSGT00940000154384 #23	ENSGT00940000160614 #24	ENSGT00940000156162.C #26	ENSGT00940000154552 #27	ENSGT00940000156941 #28	ENSGT00950000182899.C.a	ENSGT00940000161734 #32	ENSGT00940000159676 #31	ENSGT00990000203899	ENSGT00550000074917	ENSGT00940000153783.b.b.d	ENSGT00950000182930.B	ENSGT00950000182930.A.a	ENSGT00950000182930.A.b	ENSGT00950000182930.C
Passeriformes	ANCESTRAL SPECIES	9	ENSGT01030000234598.a.b	ENSGT00940000153421.a.b	ENSGT00950000183039.B.b.a ##7	ENSGT00730000111202	ENSGT00940000155531.b	ENSGT00940000156335 #9	ENSGT00390000013727.d #10	ENSGT01000000214413.b.a.a #11	ENSGT00940000156305 #12	ENSGT00390000002837 #13	ENSGT00390000009980 #14	ENSGT00940000157401 #15	ENSGT00940000155931 #17	ENSGT00390000013701 #19	ENSGT00390000015010 #20	ENSGT00950000183189.a.b.a #22	ENSGT00940000154384 #23	ENSGT00940000160614 #24	ENSGT00940000156162.C #26	ENSGT00940000154552 #27	ENSGT00940000156941 #28	ENSGT00950000182899.C.a	ENSGT00940000159676 #31	ENSGT00940000161734 #32	ENSGT00990000203899	ENSGT00550000074917	ENSGT00940000153783.b.b.d	ENSGT00950000182930.B	ENSGT00950000182930.A.a	ENSGT00950000182930.A.b	ENSGT00950000182930.C
Great tit	MODERN SPECIES	29	NAALADL2 (ENSPMJG00000002940)	TBL1XR1 (ENSPMJG00000002841)	KCNMB2 (ENSPMJG00000002756) ##7	ZMAT3 (ENSPMJG00000002709)	PIK3CA (ENSPMJG00000002701)	ZNF639 (ENSPMJG00000002695) #9	MFN1 (ENSPMJG00000002684) #10	GNB4 (ENSPMJG00000002659) #11	ACTL6A (ENSPMJG00000002638) #12	MRPL47 (ENSPMJG00000002630) #13	NDUFB5 (ENSPMJG00000002618) #14	USP13 (ENSPMJG00000002592) #15	PEX5L (ENSPMJG00000002525) #17	TTC14 (ENSPMJG00000002481) #19	CCDC39 (ENSPMJG00000002417) #20	FXR1 (ENSPMJG00000002237) #22	DNAJC19 (ENSPMJG00000002207) #23	ATP11B (ENSPMJG00000001957) #26	DCUN1D1 (ENSPMJG00000001941) #27	MCCC1 (ENSPMJG00000001932) #28	ENSPMJG00000001928	B3GNT5 (ENSPMJG00000001924) #31	MCF2L2 (ENSPMJG00000001772) #32	RFC4 (ENSPMJG00000001751)	EIF4A2 (ENSPMJG00000001736)	ENSPMJG00000001721	FETUB (ENSPMJG00000001716)	AHSG (ENSPMJG00000001712)	SENP5 (ENSPMJG00000001704)	EPHB3 (ENSPMJG00000001682)	POLR2H (ENSPMJG00000001681)
Passeriformes_d	ANCESTRAL SPECIES	10	ENSGT01030000234598.a.b	ENSGT00940000153421.a.b	ENSGT00950000183039.B.b.a ##7	ENSGT00730000111202	ENSGT00940000155531.b	ENSGT00940000156335 #9	ENSGT00390000013727.d #10	ENSGT01000000214413.b.a.a #11	ENSGT00940000156305 #12	ENSGT00390000002837 #13	ENSGT00390000009980 #14	ENSGT00940000157401 #15	ENSGT00940000155931 #17	ENSGT00390000013701 #19	ENSGT00390000015010 #20	ENSGT00950000183189.a.b.a #22	ENSGT00940000154384 #23	ENSGT00940000160614 #24	ENSGT00940000156162.C #26	ENSGT00940000154552 #27	ENSGT00940000156941 #28	ENSGT00950000182899.C.a	ENSGT00940000159676 #31	ENSGT00940000161734 #32	ENSGT00990000203899	ENSGT00550000074917	ENSGT00940000153783.b.b.d	ENSGT00950000182930.B	ENSGT00950000182930.A.a	ENSGT00950000182930.A.b	ENSGT00950000182930.C
Passeriformes_g	ANCESTRAL SPECIES	11	ENSGT01030000234598.a.b	ENSGT00940000153421.a.b	ENSGT00950000183039.B.b.a ##7	ENSGT00730000111202	ENSGT00940000155531.b	ENSGT00940000156335 #9	ENSGT00390000013727.d #10	ENSGT01000000214413.b.a.a #11	ENSGT00940000156305 #12	ENSGT00390000002837 #13	ENSGT00390000009980 #14	ENSGT00940000157401 #15	ENSGT00940000155931 #17	ENSGT00390000013701 #19	ENSGT00390000015010 #20	ENSGT00950000183189.a.b.a #22	ENSGT00940000154384 #23	ENSGT00940000160614 #24	ENSGT00940000156162.C #26	ENSGT00940000154552 #27	ENSGT00940000156941 #28	ENSGT00950000182899.C.a	ENSGT00940000159676 #31	ENSGT00940000161734 #32	ENSGT00990000203899	ENSGT00550000074917	ENSGT00940000153783.b.b.d	ENSGT00950000182930.B	ENSGT00950000182930.A.a	ENSGT00950000182930.A.b	ENSGT00950000182930.C
Medium ground finch	MODERN SPECIES	12	NAALADL2 (ENSGFOG00000007762)	TBL1XR1 (ENSGFOG00000007746)	KCNMB2 (ENSGFOG00000007709) ##7	ZMAT3 (ENSGFOG00000007697)	PIK3CA (ENSGFOG00000007668)	ZNF639 (ENSGFOG00000007659) #9	MFN1 (ENSGFOG00000007632) #10	GNB4 (ENSGFOG00000007624) #11	ACTL6A (ENSGFOG00000007543) #12	MRPL47 (ENSGFOG00000007503) #13	NDUFB5 (ENSGFOG00000007487) #14	USP13 (ENSGFOG00000007465) #15	PEX5L (ENSGFOG00000007428) #17	ENSGFOG00000007366	CCDC39 (ENSGFOG00000007337) #20	FXR1 (ENSGFOG00000005246) #22	DNAJC19 (ENSGFOG00000005157) #23	SOX2 (ENSGFOG00000005149) #24	ENSGFOG00000005136	ATP11B (ENSGFOG00000005085) #26	DCUN1D1 (ENSGFOG00000005071) #27	MCCC1 (ENSGFOG00000005054) #28	ENSGFOG00000005046	B3GNT5 (ENSGFOG00000005034) #31	ENSGFOG00000005025	MCF2L2 (ENSGFOG00000003022) #32	RFC4 (ENSGFOG00000002865)	EIF4A2 (ENSGFOG00000002798)	ENSGFOG00000002611	ENSGFOG00000013773	AHSG (ENSGFOG00000013759)
Passeroidea	ANCESTRAL SPECIES	13	ENSGT01030000234598.a.b	ENSGT00940000153421.a.b	ENSGT00950000183039.B.b.a ##7	ENSGT00730000111202	ENSGT00940000155531.b	ENSGT00940000156335 #9	ENSGT00390000013727.d #10	ENSGT01000000214413.b.a.a #11	ENSGT00940000156305 #12	ENSGT00390000002837 #13	ENSGT00390000009980 #14	ENSGT00940000157401 #15	ENSGT00940000155931 #17	ENSGT00390000013701 #19	ENSGT00390000015010 #20	ENSGT00950000183189.a.b.a #22	ENSGT00940000154384 #23	ENSGT00940000156162.C #26	ENSGT00940000154552 #27	ENSGT00940000156941 #28	ENSGT00950000182899.C.a	ENSGT00940000159676 #31	ENSGT00940000161734 #32	ENSGT00550000074917	ENSGT00940000153783.b.b.d	ENSGT00950000182930.B	ENSGT00950000182930.A.a	ENSGT00950000182930.A.b	ENSGT00950000182930.C	ENSGT00940000159865	ENSGT00940000158024.C
Zebra finch	MODERN SPECIES	31	NAALADL2 (ENSTGUG00000010781)	TBL1XR1 (ENSTGUG00000010773)	KCNMB2 (ENSTGUG00000026184) ##7	ZMAT3 (ENSTGUG00000027964)	PIK3CA (ENSTGUG00000010736)	ZNF639 (ENSTGUG00000027191) #9	MFN1 (ENSTGUG00000010693) #10	GNB4 (ENSTGUG00000021021) #11	ACTL6A (ENSTGUG00000010657) #12	MRPL47 (ENSTGUG00000010649) #13	NDUFB5 (ENSTGUG00000010639) #14	USP13 (ENSTGUG00000010622) #15	PEX5L (ENSTGUG00000010602) #17	TTC14 (ENSTGUG00000010592) #19	CCDC39 (ENSTGUG00000010586) #20	FXR1 (ENSTGUG00000010560) #22	DNAJC19 (ENSTGUG00000010557) #23	ENSTGUG00000019041	ATP11B (ENSTGUG00000010523) #26	DCUN1D1 (ENSTGUG00000010517) #27	MCCC1 (ENSTGUG00000010506) #28	ENSTGUG00000024117	B3GNT5 (ENSTGUG00000021356) #31	MCF2L2 (ENSTGUG00000010484) #32	RFC4 (ENSTGUG00000010469)	EIF4A2 (ENSTGUG00000010452)	ENSTGUG00000010451	ENSTGUG00000010450	FETUB (ENSTGUG00000010441)	AHSG (ENSTGUG00000010437)	SENP5 (ENSTGUG00000010432)
Common canary	MODERN SPECIES	10	NAALADL2 (ENSSCAG00000012244)	TBL1XR1 (ENSSCAG00000012275)	KCNMB2 (ENSSCAG00000012297) ##7	ZMAT3 (ENSSCAG00000012302)	PIK3CA (ENSSCAG00000012311)	ZNF639 (ENSSCAG00000012318) #9	MFN1 (ENSSCAG00000012323) #10	GNB4 (ENSSCAG00000012330) #11	ACTL6A (ENSSCAG00000012338) #12	MRPL47 (ENSSCAG00000012343) #13	NDUFB5 (ENSSCAG00000012346) #14	USP13 (ENSSCAG00000012352) #15	PEX5L (ENSSCAG00000012363) #17	TTC14 (ENSSCAG00000012380) #19	CCDC39 (ENSSCAG00000012392) #20	FXR1 (ENSSCAG00000012440) #22	DNAJC19 (ENSSCAG00000012624) #23	ATP11B (ENSSCAG00000012637) #26	DCUN1D1 (ENSSCAG00000012652) #27	MCCC1 (ENSSCAG00000012658) #28	ENSSCAG00000012659	MCF2L2 (ENSSCAG00000012810) #32	B3GNT5 (ENSSCAG00000013681) #31	RFC4 (ENSSCAG00000013683)	EIF4A2 (ENSSCAG00000013691)	KNG1 (ENSSCAG00000013700)	HRG (ENSSCAG00000013707)	FETUB (ENSSCAG00000013711)	AHSG (ENSSCAG00000013717)	SENP5 (ENSSCAG00000013725)	EPHB3 (ENSSCAG00000013746)
Flycatcher	MODERN SPECIES	28	NAALADL2 (ENSFALG00000008425)	TBL1XR1 (ENSFALG00000008416)	KCNMB2 (ENSFALG00000008411) ##7	ZMAT3 (ENSFALG00000008403)	PIK3CA (ENSFALG00000008395)	ZNF639 (ENSFALG00000027836) #9	MFN1 (ENSFALG00000008386) #10	GNB4 (ENSFALG00000008376) #11	ACTL6A (ENSFALG00000008369) #12	MRPL47 (ENSFALG00000008365) #13	NDUFB5 (ENSFALG00000025849) #14	USP13 (ENSFALG00000008348) #15	PEX5L (ENSFALG00000008333) #17	TTC14 (ENSFALG00000008319) #19	CCDC39 (ENSFALG00000008311) #20	FXR1 (ENSFALG00000008301) #22	DNAJC19 (ENSFALG00000008296) #23	SOX2 (ENSFALG00000014383) #24	ATP11B (ENSFALG00000008284) #26	MCCC1 (ENSFALG00000008252) #28	ENSFALG00000027817	ENSFALG00000024579	B3GNT5 (ENSFALG00000015298) #31	ENSFALG00000023180	ENSFALG00000024403	ENSFALG00000023627	MCF2L2 (ENSFALG00000008239) #32	RFC4 (ENSFALG00000008236)	EIF4A2 (ENSFALG00000008230)	KNG1 (ENSFALG00000008226)	HRG (ENSFALG00000024279)
Neognathae_c	ANCESTRAL SPECIES	13	ENSGT01030000234598.a.b	ENSGT00940000153421.a.b	ENSGT00950000183039.B.b.a ##7	ENSGT00730000111202	ENSGT00940000155531.b	ENSGT00940000156335 #9	ENSGT00390000013727.d #10	ENSGT01000000214413.b.a.a #11	ENSGT00940000156305 #12	ENSGT00390000002837 #13	ENSGT00390000009980 #14	ENSGT00940000157401 #15	ENSGT00940000155931 #17	ENSGT00390000013701 #19	ENSGT00390000015010 #20	ENSGT00950000183189.a.b.a #22	ENSGT00940000154384 #23	ENSGT00940000156162.C #26	ENSGT00940000154552 #27	ENSGT00940000156941 #28	ENSGT00950000182899.C.a	ENSGT00940000161734 #32	ENSGT00940000159676 #31	ENSGT00990000203899	ENSGT00550000074917	ENSGT00940000153783.b.b.d	ENSGT00950000182930.B	ENSGT00950000182930.A.a	ENSGT00950000182930.A.b	ENSGT00950000182930.C	ENSGT00940000159865
Kakapo	MODERN SPECIES	25	NAALADL2 (ENSSHBG00005017848)	TBL1XR1 (ENSSHBG00005017856)	KCNMB2 (ENSSHBG00005017869) ##7	ZMAT3 (ENSSHBG00005017878)	PIK3CA (ENSSHBG00005000694)	ZNF639 (ENSSHBG00005000719) #9	MFN1 (ENSSHBG00005010431) #10	GNB4 (ENSSHBG00005010477) #11	ACTL6A (ENSSHBG00005010515) #12	MRPL47 (ENSSHBG00005010546) #13	NDUFB5 (ENSSHBG00005010573) #14	USP13 (ENSSHBG00005010631) #15	PEX5L (ENSSHBG00005010862) #17	TTC14 (ENSSHBG00005012064) #19	CCDC39 (ENSSHBG00005012103) #20	FXR1 (ENSSHBG00005012156) #22	DNAJC19 (ENSSHBG00005012189) #23	ATP11B (ENSSHBG00005012327) #26	DCUN1D1 (ENSSHBG00005012436) #27	MCCC1 (ENSSHBG00005012474) #28	ENSSHBG00005012503	MCF2L2 (ENSSHBG00005012853) #32	B3GNT5 (ENSSHBG00005015288) #31	ENSSHBG00005015293	RFC4 (ENSSHBG00005015302)	EIF4A2 (ENSSHBG00005015314)	SENP5 (ENSSHBG00005015354)	KNG1 (ENSSHBG00005015609)	ENSSHBG00005015640	ENSSHBG00005015648	AHSG (ENSSHBG00005015656)
Golden eagle	MODERN SPECIES	1	TBL1XR1 (ENSACCG00020004568)	KCNMB2 (ENSACCG00020004589) ##7	ENSACCG00020004603	ZMAT3 (ENSACCG00020004611)	PIK3CA (ENSACCG00020004627)	ZNF639 (ENSACCG00020004651) #9	MFN1 (ENSACCG00020004658) #10	GNB4 (ENSACCG00020004669) #11	ACTL6A (ENSACCG00020004677) #12	MRPL47 (ENSACCG00020004710) #13	NDUFB5 (ENSACCG00020000356) #14	USP13 (ENSACCG00020000413) #15	PEX5L (ENSACCG00020000831) #17	TTC14 (ENSACCG00020000953) #19	CCDC39 (ENSACCG00020000987) #20	FXR1 (ENSACCG00020001041) #22	DNAJC19 (ENSACCG00020001068) #23	ATP11B (ENSACCG00020001153) #26	DCUN1D1 (ENSACCG00020001287) #27	MCCC1 (ENSACCG00020001312) #28	ENSACCG00020001340	MCF2L2 (ENSACCG00020001422) #32	B3GNT5 (ENSACCG00020001574) #31	RFC4 (ENSACCG00020001586)	EIF4A2 (ENSACCG00020001610)	KNG1 (ENSACCG00020001659)	FETUB (ENSACCG00020001703)	AHSG (ENSACCG00020001717)	ENSACCG00020001753	EPHB3 (ENSACCG00020001771)	POLR2H (ENSACCG00020001778)
African ostrich	MODERN SPECIES	931				ZMAT3 (ENSSCUG00000017337)	PIK3CA (ENSSCUG00000017341)	MFN1 (ENSSCUG00000017346) #10	GNB4 (ENSSCUG00000017351) #11	ACTL6A (ENSSCUG00000017355) #12	MRPL47 (ENSSCUG00000017373) #13	NDUFB5 (ENSSCUG00000017374) #14	USP13 (ENSSCUG00000017376) #15	PEX5L (ENSSCUG00000017378) #17	TTC14 (ENSSCUG00000017384) #19	CCDC39 (ENSSCUG00000017389) #20	ENSSCUG00000017390	FXR1 (ENSSCUG00000017419) #22	ENSSCUG00000017441	DNAJC19 (ENSSCUG00000017443) #23	ATP11B (ENSSCUG00000017450) #26
Australian saltwater crocodile	MODERN SPECIES	30	KCNMB2 (ENSCPRG00005009647) ##7	ZMAT3 (ENSCPRG00005009651)	ENSCPRG00005009658	ZNF639 (ENSCPRG00005009780) #9	MFN1 (ENSCPRG00005009802) #10	GNB4 (ENSCPRG00005009816) #11	ACTL6A (ENSCPRG00005010054) #12	MRPL47 (ENSCPRG00005010062) #13	NDUFB5 (ENSCPRG00005010066) #14	USP13 (ENSCPRG00005010083) #15	PEX5L (ENSCPRG00005010104) #17	TTC14 (ENSCPRG00005010137) #19	ENSCPRG00005010293	CCDC39 (ENSCPRG00005010308) #20	DNAJC19 (ENSCPRG00005010343) #23	FXR1 (ENSCPRG00005010361) #22	SOX2 (ENSCPRG00005010584) #24	ENSCPRG00005010594	ATP11B (ENSCPRG00005010622) #26	DCUN1D1 (ENSCPRG00005010672) #27	MCCC1 (ENSCPRG00005010677) #28	LAMP3 (ENSCPRG00005010688) #29	MCF2L2 (ENSCPRG00005010698) #32	B3GNT5 (ENSCPRG00005010707) #31	ENSCPRG00005010709	RFC4 (ENSCPRG00005010711)	EIF4A2 (ENSCPRG00005010713)	KNG1 (ENSCPRG00005010726)	ENSCPRG00005010729	ENSCPRG00005010732	ENSCPRG00005010738
Cryptodira	ANCESTRAL SPECIES	16	ENSGT00940000153421.a.b	ENSGT00950000183039.B.b.a ##7	ENSGT00730000111202	ENSGT00940000155531.b	ENSGT01030000235369.a	ENSGT00940000156335 #9	ENSGT00390000013727.d #10	ENSGT01000000214413.b.a.a #11	ENSGT00940000156305 #12	ENSGT00390000002837 #13	ENSGT00390000009980 #14	ENSGT00940000157401 #15	ENSGT00940000155931 #17	ENSGT00390000013701 #19	ENSGT00390000015010 #20	ENSGT00950000183189.a.b.a #22	ENSGT00940000154384 #23	ENSGT00940000160614 #24	ENSGT00940000156162.C #26	ENSGT00940000154552 #27	ENSGT00940000156941 #28	ENSGT00950000182899.C.a	ENSGT00940000164015 #29	ENSGT00940000159676 #31	ENSGT00940000161734 #32	ENSGT00990000203899	ENSGT00550000074917	ENSGT00940000153783.b.b.d	ENSGT00950000182930.B	ENSGT00950000182930.A.a	ENSGT00950000182930.A.b
Testudinoidea	ANCESTRAL SPECIES	9	ENSGT00950000183039.B.b.a ##7	ENSGT00730000111202	ENSGT00940000155531.b	ENSGT01030000235369.a	ENSGT00940000156335 #9	ENSGT00390000013727.d #10	ENSGT01000000214413.b.a.a #11	ENSGT00940000156305 #12	ENSGT00390000002837 #13	ENSGT00390000009980 #14	ENSGT00940000157401 #15	ENSGT00940000155931 #17	ENSGT00390000013701.n #19	ENSGT00390000013701.m #19	ENSGT00390000015010 #20	ENSGT00950000183189.a.b.a #22	ENSGT00940000154384 #23	ENSGT00940000160614 #24	ENSGT00940000156162.C #26	ENSGT00940000154552 #27	ENSGT00940000156941 #28	ENSGT00950000182899.C.a	ENSGT00940000159676 #31	ENSGT00940000161734 #32	ENSGT00990000203899	ENSGT00550000074917	ENSGT00940000153783.b.b.d	ENSGT00950000182930.B	ENSGT00950000182930.A.a	ENSGT00950000182930.A.b	ENSGT00950000182930.C
Emydidae	ANCESTRAL SPECIES	3	ENSGT00950000183039.B.b.a ##7	ENSGT00730000111202	ENSGT00940000155531.b	ENSGT01030000235369.a	ENSGT00940000156335 #9	ENSGT00390000013727.d #10	ENSGT01000000214413.b.a.a #11	ENSGT00940000156305 #12	ENSGT00390000002837 #13	ENSGT00390000009980 #14	ENSGT00940000157401 #15	ENSGT00940000155931 #17	ENSGT00390000013701.n #19	ENSGT00390000013701.m #19	ENSGT00390000015010 #20	ENSGT00950000183189.a.b.a #22	ENSGT00940000154384 #23	ENSGT00940000160614 #24	ENSGT00940000156162.C #26	ENSGT00940000154552 #27	ENSGT00940000156941 #28	ENSGT00950000182899.C.a	ENSGT00940000161734 #32	ENSGT00940000159676 #31	ENSGT00550000074917	ENSGT00940000153783.b.b.d	ENSGT00950000182930.B	ENSGT00950000182930.A.a	ENSGT00950000182930.A.b	ENSGT00950000182930.C	ENSGT00940000159865
Three-toed box turtle	MODERN SPECIES	32	TBL1XR1 (ENSTMTG00000009406)	KCNMB2 (ENSTMTG00000009434) ##7	ZMAT3 (ENSTMTG00000009458)	PIK3CA (ENSTMTG00000009470)	ENSTMTG00000009517	ZNF639 (ENSTMTG00000009549) #9	MFN1 (ENSTMTG00000009563) #10	GNB4 (ENSTMTG00000009587) #11	ACTL6A (ENSTMTG00000009615) #12	MRPL47 (ENSTMTG00000009647) #13	NDUFB5 (ENSTMTG00000009666) #14	USP13 (ENSTMTG00000009685) #15	PEX5L (ENSTMTG00000009761) #17	TTC14 (ENSTMTG00000009812) #19	CCDC39 (ENSTMTG00000009881) #20	FXR1 (ENSTMTG00000010020) #22	DNAJC19 (ENSTMTG00000010071) #23	SOX2 (ENSTMTG00000010093) #24	ATP11B (ENSTMTG00000010113) #26	DCUN1D1 (ENSTMTG00000010264) #27	MCCC1 (ENSTMTG00000010280) #28	ENSTMTG00000010301	MCF2L2 (ENSTMTG00000010345) #32	B3GNT5 (ENSTMTG00000010481) #31	RFC4 (ENSTMTG00000010487)	EIF4A2 (ENSTMTG00000010512)	KNG1 (ENSTMTG00000010596)	ENSTMTG00000010628	ENSTMTG00000010651	AHSG (ENSTMTG00000010663)	SENP5 (ENSTMTG00000010689)
painted turtle	MODERN SPECIES	748	KCNMB2 (ENSCPBG00000026916) ##7	ZMAT3 (ENSCPBG00000026917)	PIK3CA (ENSCPBG00000026921)	ENSCPBG00000026924	ZNF639 (ENSCPBG00000026927) #9	MFN1 (ENSCPBG00000026929) #10	GNB4 (ENSCPBG00000026930) #11	ACTL6A (ENSCPBG00000026932) #12	MRPL47 (ENSCPBG00000026934) #13	NDUFB5 (ENSCPBG00000026935) #14	USP13 (ENSCPBG00000026936) #15	PEX5L (ENSCPBG00000026944) #17	ENSCPBG00000026954 #19	ENSCPBG00000026955 #19	CCDC39 (ENSCPBG00000000173) #20	FXR1 (ENSCPBG00000000223) #22	DNAJC19 (ENSCPBG00000000285) #23	ATP11B (ENSCPBG00000000373) #26	DCUN1D1 (ENSCPBG00000000501) #27	MCCC1 (ENSCPBG00000000534) #28	LAMP3 (ENSCPBG00000000571) #29	MCF2L2 (ENSCPBG00000000648) #32	B3GNT5 (ENSCPBG00000000887) #31	RFC4 (ENSCPBG00000000925)	EIF4A2 (ENSCPBG00000000975)	KNG1 (ENSCPBG00000001093)	ENSCPBG00000001270	ENSCPBG00000001293	AHSG (ENSCPBG00000001309)	SENP5 (ENSCPBG00000001347)	EPHB3 (ENSCPBG00000001395)
Testudinidae	ANCESTRAL SPECIES	7	ENSGT00950000183039.B.b.a ##7	ENSGT00730000111202	ENSGT00940000155531.b	ENSGT01030000235369.a	ENSGT00940000156335 #9	ENSGT00390000013727.d #10	ENSGT01000000214413.b.a.a #11	ENSGT00940000156305 #12	ENSGT00390000002837 #13	ENSGT00390000009980 #14	ENSGT00940000157401 #15	ENSGT00940000155931 #17	ENSGT00390000013701.n #19	ENSGT00390000013701.m #19	ENSGT00390000015010 #20	ENSGT00950000183189.a.b.a #22	ENSGT00940000154384 #23	ENSGT00940000160614 #24	ENSGT00940000156162.C #26	ENSGT00940000154552 #27	ENSGT00940000156941 #28	ENSGT00950000182899.C.a	ENSGT00940000159676 #31	ENSGT00940000161734 #32	ENSGT00990000203899	ENSGT00550000074917	ENSGT00940000153783.b.b.d	ENSGT00950000182930.B	ENSGT00950000182930.A.a	ENSGT00950000182930.A.b	ENSGT00950000182930.C
Goode s thornscrub tortoise	MODERN SPECIES	23	KCNMB2 (ENSGEVG00005008147) ##7	ZMAT3 (ENSGEVG00005008132)	PIK3CA (ENSGEVG00005008110)	ENSGEVG00005008073	ZNF639 (ENSGEVG00005008054) #9	MFN1 (ENSGEVG00005008013) #10	GNB4 (ENSGEVG00005007979) #11	ACTL6A (ENSGEVG00005007939) #12	MRPL47 (ENSGEVG00005007908) #13	NDUFB5 (ENSGEVG00005007886) #14	USP13 (ENSGEVG00005007750) #15	PEX5L (ENSGEVG00005007677) #17	ENSGEVG00005007645 #19	ENSGEVG00005007619 #19	CCDC39 (ENSGEVG00005007473) #20	FXR1 (ENSGEVG00005007363) #22	DNAJC19 (ENSGEVG00005007338) #23	SOX2 (ENSGEVG00005007325) #24	ATP11B (ENSGEVG00005007238) #26	DCUN1D1 (ENSGEVG00005007193) #27	MCCC1 (ENSGEVG00005007168) #28	ENSGEVG00005007146	B3GNT5 (ENSGEVG00005007129) #31	MCF2L2 (ENSGEVG00005005965) #32	ENSGEVG00005005567	RFC4 (ENSGEVG00005005545)	EIF4A2 (ENSGEVG00005005476)	ENSGEVG00005005440	ENSGEVG00005005418	ENSGEVG00005005406	ENSGEVG00005005386
Abingdon island giant tortoise	MODERN SPECIES	76	TBL1XR1 (ENSCABG00000016872)	KCNMB2 (ENSCABG00000016876) ##7	ZMAT3 (ENSCABG00000016877)	PIK3CA (ENSCABG00000016963)	ENSCABG00000017237	ZNF639 (ENSCABG00000017240) #9	MFN1 (ENSCABG00000017278) #10	GNB4 (ENSCABG00000019060) #11	ACTL6A (ENSCABG00000019237) #12	MRPL47 (ENSCABG00000019319) #13	NDUFB5 (ENSCABG00000019321) #14	USP13 (ENSCABG00000019324) #15	PEX5L (ENSCABG00000019326) #17	TTC14 (ENSCABG00000019328) #19	CCDC39 (ENSCABG00000019333) #20	FXR1 (ENSCABG00000019346) #22	DNAJC19 (ENSCABG00000019628) #23	SOX2 (ENSCABG00000019639) #24
Chinese turtle	MODERN SPECIES	2228	KCNMB2 (ENSPSIG00000015760) ##7	ZMAT3 (ENSPSIG00000014839)	PIK3CA (ENSPSIG00000014440)	ZNF639 (ENSPSIG00000014336) #9	ENSPSIG00000014320	MFN1 (ENSPSIG00000013354) #10	GNB4 (ENSPSIG00000013084) #11	ACTL6A (ENSPSIG00000011750) #12	MRPL47 (ENSPSIG00000011536) #13	NDUFB5 (ENSPSIG00000011327) #14	USP13 (ENSPSIG00000010053) #15	PEX5L (ENSPSIG00000009593) #17	TTC14 (ENSPSIG00000009489) #19	ENSPSIG00000000550	CCDC39 (ENSPSIG00000008365) #20	FXR1 (ENSPSIG00000007616) #22	DNAJC19 (ENSPSIG00000007461) #23	SOX2 (ENSPSIG00000000544) #24	ENSPSIG00000000536	ATP11B (ENSPSIG00000006570) #26	DCUN1D1 (ENSPSIG00000017853) #27	MCCC1 (ENSPSIG00000017510) #28	ENSPSIG00000017491 #29	ENSPSIG00000000526	B3GNT5 (ENSPSIG00000000516) #31	MCF2L2 (ENSPSIG00000017479) #32	RFC4 (ENSPSIG00000017443)	EIF4A2 (ENSPSIG00000017404)	KNG1 (ENSPSIG00000017354)	FETUB (ENSPSIG00000017318)	AHSG (ENSPSIG00000017251)
Anura	ANCESTRAL SPECIES	26	ENSGT00940000153421.a.b	ENSGT00950000183039.B.b.a ##7	ENSGT00730000111202	ENSGT00940000155531.b	ENSGT00950000183039.B.a #7	ENSGT00940000156335 #9	ENSGT00390000013727.d #10	ENSGT01000000214413.b.a.a #11	ENSGT00940000156305 #12	ENSGT00390000002837 #13	ENSGT00390000009980 #14	ENSGT00940000157401 #15	ENSGT00940000155931 #17	ENSGT00390000013701 #19	ENSGT00390000015010 #20	ENSGT00950000183189.a.b.a #22	ENSGT00940000160614 #24	ENSGT00940000156162.C #26	ENSGT00940000154552 #27	ENSGT00940000156941 #28	ENSGT00940000164015 #29	ENSGT00940000161734 #32	ENSGT00940000159676 #31	ENSGT00550000074917	ENSGT00940000153783.b.b.d	ENSGT00950000182930.B	ENSGT00950000182930.A.a	ENSGT00950000182930.C	ENSGT00940000159865	ENSGT00390000003197	ENSGT00390000001143
Leishan spiny toad	DUPLICATION
Leishan spiny toad	DUPLICATION
Leishan spiny toad	MODERN SPECIES	7	MFN1 (ENSLLEG00000027892) #10	GNB4 (ENSLLEG00000027982) #11	ENSLLEG00000028077	ENSLLEG00000028118 #12	ENSLLEG00000028299 #12	ENSLLEG00000028388 #13	NDUFB5 (ENSLLEG00000028412) #14	USP13 (ENSLLEG00000028479) #15	PEX5L (ENSLLEG00000028895) #17	ENSLLEG00000029002	ENSLLEG00000029013	ENSLLEG00000029020	TTC14 (ENSLLEG00000029050) #19	CCDC39 (ENSLLEG00000029259) #20	ENSLLEG00000029315	ENSLLEG00000029445 #22	ENSLLEG00000029888	ENSLLEG00000029895	ENSLLEG00000029902	ENSLLEG00000029908	ENSLLEG00000029915	ENSLLEG00000029924	SOX2 (ENSLLEG00000029927) #24	ENSLLEG00000029935	ENSLLEG00000029941	ENSLLEG00000004795	ATP11B (ENSLLEG00000004892) #26	ENSLLEG00000005167	DCUN1D1 (ENSLLEG00000005195) #27	MCCC1 (ENSLLEG00000005225) #28	LAMP3 (ENSLLEG00000005285) #29
Leishan spiny toad	MODERN SPECIES	10	RASD1 (ENSLLEG00000019375)	MED9 (ENSLLEG00000019431)	ENSLLEG00000019470	NT5M (ENSLLEG00000019503)	COPS3 (ENSLLEG00000019687)	FLCN (ENSLLEG00000021041)	ENSLLEG00000021182	PLD6 (ENSLLEG00000021204)	MPRIP (ENSLLEG00000021300)	ENSLLEG00000022618	AXIN1 (ENSLLEG00000023214)	ENSLLEG00000023438	RGS11 (ENSLLEG00000023987)	ENSLLEG00000024515	PGAP6 (ENSLLEG00000024562)	ENSLLEG00000024733 #22	PERCC1 (ENSLLEG00000024761)	CLCN7 (ENSLLEG00000024792)	PTX4 (ENSLLEG00000025074)	ENSLLEG00000025141	SEC14L5 (ENSLLEG00000025176)	ENSLLEG00000025305	ENSLLEG00000025460	PPL (ENSLLEG00000025498)	UBN1 (ENSLLEG00000025751)	GLYR1 (ENSLLEG00000026130)	ROGDI (ENSLLEG00000027076)	ENSLLEG00000027131	ENSLLEG00000027167	ENSLLEG00000027180	ENSLLEG00000027217
Leishan spiny toad	MODERN SPECIES		ENSLLEG00000003594	ENSLLEG00000003667	NOA1 (ENSLLEG00000003839)	ENSLLEG00000003862	ENSLLEG00000003871	ENSLLEG00000003879	ENSLLEG00000003910	ENSLLEG00000003974	ENSLLEG00000003980	ENSLLEG00000003988	ZBTB7A (ENSLLEG00000003998)	ENSLLEG00000004002	ENSLLEG00000004022	ENSLLEG00000004042	LSM4 (ENSLLEG00000004045)	ENSLLEG00000004051 #22	ENSLLEG00000004060	ENSLLEG00000004068	ENSLLEG00000004075	ENSLLEG00000004080	ENSLLEG00000004084	ENSLLEG00000004087	ATCAY (ENSLLEG00000004102)	ENSLLEG00000004129	ENSLLEG00000004130	MRPL54 (ENSLLEG00000004133)	ENSLLEG00000004137	APBA3 (ENSLLEG00000005030)	TJP3 (ENSLLEG00000005069)	PIP5K1C (ENSLLEG00000005163)	ENSLLEG00000005325
Frog	MODERN SPECIES	5	tbl1xr1 (ENSXETG00000001521)	kcnmb2 (ENSXETG00000037867) ##7	zmat3 (ENSXETG00000007251)	pik3ca (ENSXETG00000007252)	kcnmb3 (ENSXETG00000007254) #7	znf639 (ENSXETG00000007256) #9	mfn1 (ENSXETG00000007258) #10	gnb4 (ENSXETG00000007259) #11	actl6a (ENSXETG00000007260) #12	mrpl47 (ENSXETG00000029930) #13	ndufb5 (ENSXETG00000007264) #14	usp13 (ENSXETG00000007265) #15	pex5l (ENSXETG00000032445) #17	ttc14 (ENSXETG00000019435) #19	ccdc39 (ENSXETG00000019437) #20	fxr1 (ENSXETG00000019441) #22	sox2 (ENSXETG00000036807) #24	ENSXETG00000038267	atp11b (ENSXETG00000016814) #26	dcun1d1 (ENSXETG00000016813) #27	mccc1 (ENSXETG00000016826) #28	lamp3 (ENSXETG00000036063) #29	atp13a-like (ENSXETG00000016833)	plaat1 (ENSXETG00000032952)	atp13a4 (ENSXETG00000016836)	opa1 (ENSXETG00000016841)	hes1 (ENSXETG00000016852)	ENSXETG00000044142	cpn2.2 (ENSXETG00000030284)	lrrc15 (ENSXETG00000006623)	GP5 (ENSXETG00000003446)
Coelacanth	MODERN SPECIES	333		TBL1XR1 (ENSLACG00000016986)	KCNMB2 (ENSLACG00000015936) ##7	ZMAT3 (ENSLACG00000015780)	PIK3CA (ENSLACG00000015507)	KCNMB3 (ENSLACG00000015425) #7	MFN1 (ENSLACG00000015275) #10	GNB4 (ENSLACG00000014929) #11	ACTL6A (ENSLACG00000014797) #12	MRPL47 (ENSLACG00000014781) #13	NDUFB5 (ENSLACG00000014749) #14	USP13 (ENSLACG00000014314) #15	PEX5L (ENSLACG00000013935) #17	TTC14 (ENSLACG00000012412) #19	CCDC39 (ENSLACG00000012072) #20	FXR1 (ENSLACG00000011290) #22	DNAJC19 (ENSLACG00000011183) #23	SOX2 (ENSLACG00000006560) #24
Actinopterygii	ANCESTRAL SPECIES	10														ENSGT00390000013701 #19	ENSGT00390000015010 #20	ENSGT00950000183189.a.b.a #22	ENSGT00940000154384 #23	ENSGT00940000160614 #24	ENSGT00940000156162.C #26	ENSGT00940000154552 #27	ENSGT00940000156941 #28	ENSGT00950000182899.C.a	ENSGT00950000182930.B	ENSGT00940000153783.b.b.d	ENSGT00550000074917	ENSGT00940000161734 #32	ENSGT00940000159676 #31	ENSGT00940000156299	ENSGT00390000015332	ENSGT00940000155789	ENSGT01030000234598.a.b
Neopterygii	ANCESTRAL SPECIES	17														ENSGT00390000013701 #19	ENSGT00390000015010 #20	ENSGT00950000183189.a.b.a #22	ENSGT00940000154384 #23	ENSGT00940000160614 #24	ENSGT00940000156162.C #26	ENSGT00940000154552 #27	ENSGT00940000156941 #28	ENSGT00950000182899.C.a	ENSGT00950000182930.B	ENSGT00940000153783.b.b.d	ENSGT00550000074917	ENSGT00940000161734 #32	ENSGT00940000159676 #31	ENSGT00940000156299	ENSGT00390000015332	ENSGT00940000155789	ENSGT01030000234598.a.b
Osteoglossocephalai	ANCESTRAL SPECIES	234															ENSGT00390000015010 #20	ENSGT00950000183189.a.b.a #22	ENSGT00940000154384 #23	ENSGT00940000160614 #24	ENSGT00940000156162.C #26	ENSGT00940000154552 #27	ENSGT00940000156941 #28	ENSGT00950000182899.C.a	ENSGT00950000182930.B	ENSGT00940000153783.b.b.d	ENSGT00550000074917	ENSGT00940000161734 #32	ENSGT00940000159676.a #31	ENSGT00940000156299	ENSGT00390000015332	ENSGT00940000155789	ENSGT01030000234598.a.b
Clupeocephala	ANCESTRAL SPECIES	164	ENSGT00940000165367	ENSGT00390000018195	ENSGT00390000018026	ENSGT00940000157606	ENSGT00940000163473.i	ENSGT00390000015492.B	ENSGT00950000183063.c.b.b	ENSGT00950000183063.c.b.a	ENSGT00390000004757	ENSGT00940000156389.a	ENSGT01050000244937.a.b.b	ENSGT00940000153386.A	ENSGT00390000003006	ENSGT00940000174617	ENSGT00390000013701 #19	ENSGT00950000183189.a.b.a #22	ENSGT00940000154384 #23	ENSGT00940000160614 #24	ENSGT00940000156162.C #26	ENSGT00940000156941 #28	ENSGT00940000169190	ENSGT00940000153783.b.b.c.b	ENSGT00550000074917	ENSGT00940000161734 #32	ENSGT00940000159676.a #31	ENSGT00940000156299	ENSGT00390000015332	ENSGT00940000155789	ENSGT01030000234598.a.b	ENSGT00940000153421.a.a.b	ENSGT00950000183039.B.b.c ##7
Otomorpha	ANCESTRAL SPECIES	134	ENSGT00940000158024.C	ENSGT00940000165367	ENSGT00390000018195	ENSGT00390000018026	ENSGT00940000157606	ENSGT00940000163473.i	ENSGT00390000015492.B	ENSGT00950000183063.c.b.b	ENSGT00950000183063.c.b.a	ENSGT00390000004757	ENSGT00940000156389.a	ENSGT01050000244937.a.b.b	ENSGT00940000153386.A	ENSGT00940000174617	ENSGT00390000013701 #19	ENSGT00950000183189.a.b.a #22	ENSGT00940000154384 #23	ENSGT00940000160614 #24	ENSGT00940000156162.C #26	ENSGT00940000156941 #28	ENSGT00940000169190	ENSGT00940000153783.b.b.c.b	ENSGT00550000074917	ENSGT00950000182899.C.a	ENSGT00950000182930.B	ENSGT00940000159676.a #31	ENSGT00940000161734 #32	ENSGT00940000156299	ENSGT00390000015332	ENSGT00940000155789	ENSGT01030000234598.a.b
Clupeiformes	ANCESTRAL SPECIES	13	ENSGT00390000003015.c	ENSGT00940000166725	ENSGT00390000018195	ENSGT00390000018026	ENSGT00940000157606	ENSGT00940000163473.i	ENSGT00390000015492.B	ENSGT00950000183063.c.b.b	ENSGT00950000183063.c.b.a	ENSGT00390000004757	ENSGT00940000156389.a	ENSGT01050000244937.a.b.b	ENSGT00940000153386.A	ENSGT00940000174617	ENSGT00390000013701 #19	ENSGT00950000183189.a.b.a #22	ENSGT00940000154384 #23	ENSGT00940000156162.C #26	ENSGT00940000156941 #28	ENSGT00950000182899.C.a	ENSGT00950000182930.B	ENSGT00940000153783.b.b.d	ENSGT00550000074917	ENSGT00940000159676.a #31	ENSGT00940000161734 #32	ENSGT00940000156299	ENSGT00390000015332	ENSGT00940000155789	ENSGT01030000234598.a.b	ENSGT00940000153421.a.a.b	ENSGT00950000183039.B.b.c ##7
Atlantic herring	MODERN SPECIES	1	il12rb2 (ENSCHAG00000025366)	ENSCHAG00000025347	ATP13A3 (ENSCHAG00000024418)	tmem44 (ENSCHAG00000024350)	ENSCHAG00000024342	tie1 (ENSCHAG00000024160)	mpl (ENSCHAG00000024138)	ENSCHAG00000024135	orc1 (ENSCHAG00000024107)	prpf38a (ENSCHAG00000024091)	dda1 (ENSCHAG00000024078)	acap2b (ENSCHAG00000021837)	htr2b (ENSCHAG00000021757)	psmd1 (ENSCHAG00000020333)	ttc14 (ENSCHAG00000020170) #19	fxr1 (ENSCHAG00000019921) #22	dnajc19 (ENSCHAG00000019857) #23	ATP11B (ENSCHAG00000017464) #26	mccc1 (ENSCHAG00000014442) #28	ENSCHAG00000014326	ENSCHAG00000014316	eif4a2 (ENSCHAG00000013854)	rfc4 (ENSCHAG00000013734)	b3gnt5a (ENSCHAG00000013728) #31	MCF2L2 (ENSCHAG00000011010) #32	ect2 (ENSCHAG00000009113)	SPATA16 (ENSCHAG00000009031)	nlgn1 (ENSCHAG00000008823)	NAALADL2 (ENSCHAG00000008777)	tbl1xr1a (ENSCHAG00000008316)	ENSCHAG00000008270 ##7
Denticle herring	MODERN SPECIES	4	TMEM125 (ENSDCDG00000035885)	ap1m3 (ENSDCDG00000035884)	polr2h (ENSDCDG00000035883)	ARMC9 (ENSDCDG00000035882)	b3gnt7 (ENSDCDG00000035881)	ncl (ENSDCDG00000035876)	nppc (ENSDCDG00000035875)	alpi.1 (ENSDCDG00000035873)	alpi.2 (ENSDCDG00000035872)	ppp1r2 (ENSDCDG00000035871)	acap2b (ENSDCDG00000035836)	htr2b (ENSDCDG00000035822)	psmd1 (ENSDCDG00000035814)	ENSDCDG00000035811	ttc14 (ENSDCDG00000035805) #19	fxr1 (ENSDCDG00000035796) #22	dnajc19 (ENSDCDG00000035794) #23	ATP11B (ENSDCDG00000035773) #26	mccc1 (ENSDCDG00000035532) #28	ENSDCDG00000035446	ENSDCDG00000035443	eif4a2 (ENSDCDG00000035345)	rfc4 (ENSDCDG00000035307)	b3gnt5a (ENSDCDG00000035305) #31	ENSDCDG00000035290 #32	ect2 (ENSDCDG00000035162)	nlgn1 (ENSDCDG00000035089)	NAALADL2 (ENSDCDG00000035081)	tbl1xr1a (ENSDCDG00000035070)	ENSDCDG00000035062 ##7	ZMAT3 (ENSDCDG00000035057)
Otophysi	ANCESTRAL SPECIES	198	ENSGT00940000158024.C	ENSGT00940000165367	ENSGT00390000018195	ENSGT00390000018026	ENSGT00940000157606	ENSGT00940000163473.i	ENSGT00390000015492.B	ENSGT00950000183063.c.b.b	ENSGT00950000183063.c.b.a	ENSGT00390000004757	ENSGT00940000156389.a	ENSGT01050000244937.a.b.b	ENSGT00940000153386.A	ENSGT00940000174617	ENSGT00390000013701 #19	ENSGT00950000183189.a.b.a #22	ENSGT00940000154384 #23	ENSGT00940000160614 #24	ENSGT00940000156162.C #26	ENSGT00940000156941 #28	ENSGT00950000182899.C.a	ENSGT00950000182930.B	ENSGT00390000018319.a.b.b.b.b	ENSGT00940000160221.c	ENSGT00940000165866
Characiphysae	ANCESTRAL SPECIES	28	ENSGT00940000158024.C	ENSGT00940000165367	ENSGT00390000018195	ENSGT00390000018026	ENSGT00940000157606	ENSGT00940000163473.i	ENSGT00390000015492.B	ENSGT00950000183063.c.b.b	ENSGT00950000183063.c.b.a	ENSGT00390000004757	ENSGT00940000156389.a	ENSGT00940000153386.A	ENSGT01050000244937.a.b.b	ENSGT00940000174617	ENSGT00390000013701 #19	ENSGT00950000183189.a.b.a #22	ENSGT00940000154384 #23	ENSGT00940000160614 #24	ENSGT00940000156162.C #26	ENSGT00940000156941 #28	ENSGT00950000182899.C.a	ENSGT00950000182930.B	ENSGT00390000018319.a.b.b.b.b	ENSGT00940000160221.c	ENSGT00940000165866	ENSGT00940000157395	ENSGT00390000006932	ENSGT00510000047872	ENSGT00940000159993	ENSGT00390000014000	ENSGT00950000182983.B.a.a
Characiphysae_b	ANCESTRAL SPECIES	25	ENSGT00940000158024.C	ENSGT00940000165367	ENSGT00390000018195	ENSGT00390000018026	ENSGT00940000157606	ENSGT00940000163473.i	ENSGT00390000015492.B	ENSGT00950000183063.c.b.b	ENSGT00950000183063.c.b.a	ENSGT00390000004757	ENSGT00940000156389.a	ENSGT00940000153386.A	ENSGT01050000244937.a.b.b	ENSGT00940000174617	ENSGT00390000013701 #19	ENSGT00950000183189.a.b.a #22	ENSGT00940000154384 #23	ENSGT00940000160614 #24	ENSGT00940000156162.C #26	ENSGT00940000156941 #28	ENSGT00950000182899.C.a	ENSGT00950000182930.B	ENSGT00390000018319.a.b.b.b.b	ENSGT00940000160221.c	ENSGT00940000165866	ENSGT00940000157395	ENSGT00390000006932	ENSGT00510000047872	ENSGT00940000159993	ENSGT00390000014000	ENSGT00950000182983.B.a.a
Characoidei	ANCESTRAL SPECIES	26	ENSGT00940000155404.i.b	ENSGT00940000157375.c	ENSGT00950000182983.B.a.a	ENSGT00390000014000	ENSGT00940000159993	ENSGT00510000047872	ENSGT00390000006932	ENSGT00940000157395	ENSGT00940000165866	ENSGT00390000004757	ENSGT00940000156389.a	ENSGT01050000244937.a.b.b	ENSGT00940000153386.A	ENSGT00940000174617	ENSGT00390000013701 #19	ENSGT00950000183189.a.b.a #22	ENSGT00940000154384 #23	ENSGT00940000160614 #24	ENSGT00940000156162.C #26	ENSGT00940000156941 #28	ENSGT01000000216191	ENSGT00940000163473.i	ENSGT00390000015492.B	ENSGT00950000183063.c.b.b	ENSGT00950000183063.c.b.a	ENSGT00940000160221.c	ENSGT00940000157606	ENSGT00390000018026	ENSGT00390000018195	ENSGT00940000165367	ENSGT00940000158024.C
Red-bellied piranha	MODERN SPECIES	464															ttc14 (ENSPNAG00000021293) #19	fxr1 (ENSPNAG00000021229) #22	ENSPNAG00000021146	sox2 (ENSPNAG00000021116) #24
Mexicana tetra	MODERN SPECIES	20	ARHGEF18 (ENSAMXG00000015886)	enc3 (ENSAMXG00000024846)	rsph3 (ENSAMXG00000037608)	timm13 (ENSAMXG00000040577)	ENSAMXG00000015716	lsm7 (ENSAMXG00000037622)	sass6 (ENSAMXG00000015631)	mfsd14a1 (ENSAMXG00000015606)	ENSAMXG00000015560	ppp1r2 (ENSAMXG00000033495)	acap2b (ENSAMXG00000001330)	htr2b (ENSAMXG00000001352)	psmd1 (ENSAMXG00000001344)	ENSAMXG00000040290	ttc14 (ENSAMXG00000001353) #19	fxr1 (ENSAMXG00000001357) #22	dnajc19 (ENSAMXG00000001366) #23	sox2 (ENSAMXG00000026046) #24	ATP11B (ENSAMXG00000001413) #26	mccc1 (ENSAMXG00000001531) #28	ENSAMXG00000041597	ENSAMXG00000001614	ENSAMXG00000029044	ncl (ENSAMXG00000001647)	nppc (ENSAMXG00000038587)	alpi.1 (ENSAMXG00000001702)	alpi.2 (ENSAMXG00000042860)	ENSAMXG00000038103	b3gnt7 (ENSAMXG00000042723)	ARMC9 (ENSAMXG00000001779)	polr2h (ENSAMXG00000001800)
Electric eel	MODERN SPECIES	157															ttc14 (ENSEEEG00000017262) #19	fxr1 (ENSEEEG00000013987) #22	dnajc19 (ENSEEEG00000013910) #23	sox2 (ENSEEEG00000013908) #24	ENSEEEG00000013906	ATP11B (ENSEEEG00000012527) #26	mccc1 (ENSEEEG00000011984) #28	ENSEEEG00000011960	kng1 (ENSEEEG00000011957)	ENSEEEG00000011953	MAP1S (ENSEEEG00000011948)	ENSEEEG00000011946	mfsd14a1 (ENSEEEG00000011933)	sass6 (ENSEEEG00000011815)	lsm7 (ENSEEEG00000011778)	ENSEEEG00000011775	timm13 (ENSEEEG00000011773)
Channel catfish	MODERN SPECIES	1	lsm7 (ENSIPUG00000024724)	ENSIPUG00000024717	timm13 (ENSIPUG00000024713)	enc3 (ENSIPUG00000024711)	arhgef18 (ENSIPUG00000024688)	insrb (ENSIPUG00000024674)	use1 (ENSIPUG00000024672)	myo9b (ENSIPUG00000024658)	s1pr4 (ENSIPUG00000024637)	ncln (ENSIPUG00000024632)	cers1 (ENSIPUG00000024624)	ENSIPUG00000024621	lamp3 (ENSIPUG00000024619)	mccc1 (ENSIPUG00000024615) #28	ATP11B (ENSIPUG00000024606) #26	fxr1 (ENSIPUG00000024597) #22	dnajc19 (ENSIPUG00000024593) #23	sox2 (ENSIPUG00000024592) #24	ttc14 (ENSIPUG00000024586) #19	htr2b (ENSIPUG00000024583)	psmd1 (ENSIPUG00000024562)	ncl (ENSIPUG00000024556)	ppp1r2 (ENSIPUG00000024467)	alpi.2 (ENSIPUG00000024465)	alpi.1 (ENSIPUG00000024463)	ENSIPUG00000024461	nppc (ENSIPUG00000024460)	acap2 (ENSIPUG00000024458)	b3gnt7 (ENSIPUG00000024457)	armc9 (ENSIPUG00000024344)	polr2h (ENSIPUG00000024331)
Cyprinoidei	ANCESTRAL SPECIES	17	ENSGT00390000011314	ENSGT00940000158024.C.e	ENSGT00940000165367	ENSGT00390000018195	ENSGT00390000018026	ENSGT00940000157606	ENSGT00940000163473.i	ENSGT00390000015492.B	ENSGT00950000183063.c.b.b	ENSGT00950000183063.c.b.a	ENSGT00390000004757	ENSGT00940000156389.a	ENSGT01050000244937.a.b.b	ENSGT00940000153386.A	ENSGT00390000013701 #19	ENSGT00950000183189.a.b.a #22	ENSGT00940000154384 #23	ENSGT00940000160614 #24	ENSGT00940000156162.C #26	ENSGT00940000156941 #28	ENSGT00950000182899.C.a	ENSGT00950000182930.B	ENSGT00390000018319.a.b.b.b.b	ENSGT00940000160221.c	ENSGT00940000165866	ENSGT00940000155631
Cyprininae	DUPLICATION
Cyprininae	ANCESTRAL SPECIES	272	ENSGT00940000160019	ENSGT01100000263484.A.c.a.a.b.b	ENSGT00940000158024.C.e.b	ENSGT00390000018026.a	ENSGT00940000157606.m	ENSGT00940000163473.i.c	ENSGT00390000015492.B.e	ENSGT00950000183063.c.b.b.e	ENSGT00950000183063.c.b.a.y	ENSGT00390000004757.a.a	ENSGT00940000156389.a.q	ENSGT00940000153386.A.k	ENSGT01050000244937.a.b.b.k	ENSGT00390000013701.r #19	ENSGT00390000013701.q #19	ENSGT00950000183189.a.b.a.a #22	ENSGT00940000154384.a #23	ENSGT00940000156162.C.a #26	ENSGT00950000182899.C.a.a	ENSGT00950000182930.B.e	ENSGT00390000018319.a.b.b.b.b.a	ENSGT00940000160221.c.c	ENSGT00950000183209.b.a.a.h.b.b	ENSGT00940000164764.j.b.b	ENSGT00940000165109.a	ENSGT00940000157908.h.a	ENSGT00940000157560.d.a.h	ENSGT00940000163836.a.a	ENSGT00940000155654.gb
Cyprininae_a	ANCESTRAL SPECIES	143	ENSGT00940000160019.h	ENSGT01100000263484.A.c.a.a.b.b	ENSGT00940000158024.C.e.b	ENSGT00390000018026.a	ENSGT00940000157606.m	ENSGT00940000163473.i.c	ENSGT00390000015492.B.e	ENSGT00950000183063.c.b.b.e	ENSGT00950000183063.c.b.a.y	ENSGT00390000004757.a.a	ENSGT00940000156389.a.q	ENSGT00940000153386.A.k	ENSGT01050000244937.a.b.b.k	ENSGT00390000013701.r #19	ENSGT00390000013701.q #19	ENSGT00950000183189.a.b.a.a #22	ENSGT00940000154384.a #23	ENSGT00940000156162.C.a #26	ENSGT00950000182899.C.a.a	ENSGT00950000182930.B.e	ENSGT00390000018319.a.b.b.b.b.a	ENSGT00940000160221.c.c	ENSGT00940000165866.f	ENSGT00940000155631.i	ENSGT00950000183209.b.a.a.h.b.b	ENSGT00940000164764.j.b.a	ENSGT00940000165109.a	ENSGT00940000157908.h.a	ENSGT00940000157560.d.a.h	ENSGT00940000163836.a.a	ENSGT00940000154196.b.d
Common carp reference	MODERN SPECIES	43	ENSCCRG00000067306	ENSCCRG00000072314	ENSCCRG00000035534	ENSCCRG00000022726	b3gnt7 (ENSCCRG00000079309)	ncl (ENSCCRG00000078126)	nppc (ENSCCRG00000001661)	ENSCCRG00000035138	alpi.2 (ENSCCRG00000070873)	ppp1r2 (ENSCCRG00000079721)	acap2b (ENSCCRG00000077846)	psmd1 (ENSCCRG00000069068)	htr2b (ENSCCRG00000035197)	ENSCCRG00000082803	ttc14 (ENSCCRG00000038514) #19	fxr1 (ENSCCRG00000042409) #22	dnajc19 (ENSCCRG00000079027) #23	sox2 (ENSCCRG00000081265) #24	ATP11B (ENSCCRG00000035657) #26	ENSCCRG00000018351	ENSCCRG00000018348	ENSCCRG00000004905	ENSCCRG00000004912	ENSCCRG00000004924	ENSCCRG00000038655	ENSCCRG00000074091	ENSCCRG00000066861	ENSCCRG00000069473	ENSCCRG00000049772	ENSCCRG00000077903	ENSCCRG00000001443
Golden-line barbel	MODERN SPECIES	404							alpi.1 (ENSSGRG00000048028)	alpi.2 (ENSSGRG00000048036)	ENSSGRG00000048037	ppp1r2 (ENSSGRG00000048038)	acap2b (ENSSGRG00000048045)	psmd1 (ENSSGRG00000048361)	htr2b (ENSSGRG00000049083)	ENSSGRG00000049086 #19	ttc14 (ENSSGRG00000049087) #19	fxr1 (ENSSGRG00000049111) #22	ENSSGRG00000051585	ATP11B (ENSSGRG00000051611) #26	ENSSGRG00000051888	kng1 (ENSSGRG00000051890)	ENSSGRG00000051891	CARTPT (ENSSGRG00000051892)	ENSSGRG00000051894	ACY1 (ENSSGRG00000051899)	ENSSGRG00000051976	ENSSGRG00000051980	ENSSGRG00000052050	soul4 (ENSSGRG00000052145)	ptk7a (ENSSGRG00000052157)	ENSSGRG00000052325	ENSSGRG00000052688
Goldfish	MODERN SPECIES	41	ENSCARG00000040346	ENSCARG00000040762	ENSCARG00000040862	ENSCARG00000040980	ENSCARG00000041040	NMUR1 (ENSCARG00000041053)	alpi.1 (ENSCARG00000041115)	alpi.2 (ENSCARG00000041650)	ppp1r2 (ENSCARG00000041668)	acap2b (ENSCARG00000042167)	ENSCARG00000050547	psmd1 (ENSCARG00000050678)	htr2b (ENSCARG00000050868)	ENSCARG00000050887	ttc14 (ENSCARG00000050909) #19	fxr1 (ENSCARG00000051163) #22	dnajc19 (ENSCARG00000053405) #23	ENSCARG00000053504	ATP11B (ENSCARG00000053561) #26	ENSCARG00000054224	ENSCARG00000054235	CARTPT (ENSCARG00000054245)	ENSCARG00000054262	ENSCARG00000054295	ENSCARG00000054307	ENSCARG00000019371	ENSCARG00000019388	ENSCARG00000019494	klc4 (ENSCARG00000019516)	soul4 (ENSCARG00000019652)	ptk7a (ENSCARG00000019728)
Cyprininae	ANCESTRAL SPECIES	472														ENSGT01050000244937.a.b.b.l	ENSGT00940000153386.A.l	ENSGT00950000183189.a.b.a.b #22	ENSGT00940000154384.b #23	ENSGT00940000160614.r #24	ENSGT00940000156162.C.b #26	ENSGT00940000156941 #28	ENSGT00950000182899.C.a.b	ENSGT00950000182930.B.f	ENSGT00390000018319.a.b.b.b.b.b	ENSGT00940000160221.c.d	ENSGT00940000165866	ENSGT00940000155631.j	ENSGT00390000005351.p	ENSGT00940000155781.q.b	ENSGT00950000183146.b.b.b	ENSGT01030000234648.a.a.c.a.e	ENSGT00390000001505.e
Goldfish	MODERN SPECIES	14	NMUR1 (ENSCARG00000012560)	hykk.2 (ENSCARG00000012566)	ENSCARG00000012592	ENSCARG00000013306	polr2h (ENSCARG00000013316)	ARMC9 (ENSCARG00000013325)	b3gnt7 (ENSCARG00000013339)	ncl (ENSCARG00000013344)	nppc (ENSCARG00000013356)	alpi.1 (ENSCARG00000013358)	alpi.2 (ENSCARG00000013416)	ppp1r2 (ENSCARG00000013433)	acap2b (ENSCARG00000013487)	psmd1 (ENSCARG00000014038)	htr2b (ENSCARG00000014146)	fxr1 (ENSCARG00000014182) #22	dnajc19 (ENSCARG00000014749) #23	sox2 (ENSCARG00000014763) #24	ATP11B (ENSCARG00000014824) #26	mccc1 (ENSCARG00000016210) #28	ENSCARG00000016486	ENSCARG00000016496	CARTPT (ENSCARG00000016507)	MAP1S (ENSCARG00000016516)	ENSCARG00000016529	ACY1 (ENSCARG00000016559)	ENSCARG00000016718	ENSCARG00000016734	ENSCARG00000016749	ENSCARG00000016767	ENSCARG00000016774
Cyprininae_a	ANCESTRAL SPECIES	300	ENSGT01100000263484.A.c.a.a.b.a	ENSGT00390000011314	ENSGT00940000158024.C.e.a	ENSGT00940000165367	ENSGT00390000018195	ENSGT00390000018026.b	ENSGT00940000157606.n	ENSGT00940000163473.i.d	ENSGT00390000015492.B.f	ENSGT00950000183063.c.b.b.f	ENSGT00950000183063.c.b.a.z	ENSGT00390000004757.b	ENSGT00940000156389.a.r	ENSGT01050000244937.a.b.b.l	ENSGT00940000153386.A.l	ENSGT00950000183189.a.b.a.b #22	ENSGT00940000154384.b #23	ENSGT00940000160614.r #24	ENSGT00940000156162.C.b #26	ENSGT00940000156941 #28	ENSGT00950000182899.C.a.b	ENSGT00950000182930.B.f	ENSGT00390000018319.a.b.b.b.b.b	ENSGT00940000160221.c.d	ENSGT00940000165866.e	ENSGT00940000155631.j	ENSGT00390000005351.p.a	ENSGT00940000155781.q.b	ENSGT00950000183146.b.b.b	ENSGT01030000234648.a.a.c.a.e	ENSGT00390000001505.e
Common carp reference	MODERN SPECIES	5	ENSCCRG00000045664	hykk.2 (ENSCCRG00000045661)	ENSCCRG00000018560	ENSCCRG00000028751	ENSCCRG00000028719	b3gnt7 (ENSCCRG00000022708)	ncl (ENSCCRG00000077246)	nppc (ENSCCRG00000063613)	ENSCCRG00000044114	alpi.2 (ENSCCRG00000028702)	ENSCCRG00000024903	ENSCCRG00000019151	psmd1 (ENSCCRG00000035208)	htr2b (ENSCCRG00000057644)	ENSCCRG00000064879	fxr1 (ENSCCRG00000042904) #22	dnajc19 (ENSCCRG00000042262) #23	sox2 (ENSCCRG00000054914) #24	ATP11B (ENSCCRG00000040362) #26	mccc1 (ENSCCRG00000040127) #28	ENSCCRG00000040078	ENSCCRG00000055191	ENSCCRG00000076673	ENSCCRG00000070613	ENSCCRG00000057997	ENSCCRG00000052939	ENSCCRG00000072056	ENSCCRG00000066410	ENSCCRG00000078543	ENSCCRG00000054158	ENSCCRG00000065730
Golden-line barbel	MODERN SPECIES	1402															ttc14 (ENSSGRG00000009253) #19	fxr1 (ENSSGRG00000009343) #22	dnajc19 (ENSSGRG00000010381) #23	ENSSGRG00000010383	ENSSGRG00000010384
Zebrafish	MODERN SPECIES	14	hps3 (ENSDARG00000015749)	cp (ENSDARG00000010312)	tm4sf18 (ENSDARG00000060668)	tm4sf4 (ENSDARG00000040747)	wwtr1 (ENSDARG00000067719)	commd2 (ENSDARG00000003373)	ENSDARG00000070958	kcnh1b (ENSDARG00000023236)	ENSDARG00000053973	ahsg1 (ENSDARG00000026764)	ppp1r2 (ENSDARG00000054007)	acap2b (ENSDARG00000060783)	htr2b (ENSDARG00000115925)	psmd1 (ENSDARG00000003189)	ttc14 (ENSDARG00000013845) #19	fxr1 (ENSDARG00000022968) #22	dnajc19 (ENSDARG00000044420) #23	sox2 (ENSDARG00000070913) #24	ATP11B (ENSDARG00000101094) #26	ENSDARG00000096237	si:dkey-37m8.11 (ENSDARG00000040230)	ENSDARG00000096423	trim35-20 (ENSDARG00000070847)	mccc1 (ENSDARG00000102538) #28	kng1 (ENSDARG00000022372)	CARTPT (ENSDARG00000070930)	MAP1S (ENSDARG00000060805)	ENSDARG00000089661	acy1 (ENSDARG00000038475)	ACY1 (ENSDARG00000111129)	ENSDARG00000095913
Euteleosteomorpha	ANCESTRAL SPECIES	244														ENSGT00950000182865.b.a.b.b.a.a.a	ENSGT00390000013701 #19	ENSGT00950000183189.a.b.a #22	ENSGT00940000154384 #23	ENSGT00940000160614 #24	ENSGT00940000156162.C #26	ENSGT00940000156941 #28	ENSGT00950000182899.C.a	ENSGT00950000182930.B	ENSGT00940000155531.a.a	ENSGT00730000111202	ENSGT00950000183039.B.b.c ##7	ENSGT00940000153421.a.a.b	ENSGT01030000234598.a.b	ENSGT00940000155789	ENSGT00390000015332	ENSGT00940000156299	ENSGT00940000159676.a #31
Acanthomorphata	ANCESTRAL SPECIES	116														ENSGT00950000182865.b.a.b.b.a.a.a	ENSGT00390000013701 #19	ENSGT00950000183189.a.b.a #22	ENSGT00940000154384 #23	ENSGT00940000160614 #24	ENSGT00940000156162.C #26	ENSGT00940000156941 #28	ENSGT00950000182899.C.a	ENSGT00950000182930.B	ENSGT00940000155531.a.a	ENSGT00730000111202	ENSGT00940000154507.t	ENSGT00940000156262	ENSGT00940000164867.b	ENSGT00940000159265	ENSGT00390000001143	ENSGT00940000157074	ENSGT00390000003197
Cod	MODERN SPECIES	3	pdcb (ENSGMOG00000034832)	ptgs2b (ENSGMOG00000010880)	PLA2G4A (ENSGMOG00000010862)	arpc5b (ENSGMOG00000010856)	HMCN1 (ENSGMOG00000010733)	ivns1abpa (ENSGMOG00000004931)	ENSGMOG00000036754	TRMT1L (ENSGMOG00000009535)	niban1a (ENSGMOG00000009550)	kifap3a (ENSGMOG00000009568)	ntmt2 (ENSGMOG00000031238)	MAST2 (ENSGMOG00000015409)	PIK3R3 (ENSGMOG00000000803)	TSPAN1 (ENSGMOG00000003195)	pomgnt1 (ENSGMOG00000003207)	ENSGMOG00000000446 #22	dnajc19 (ENSGMOG00000000473) #23	ENSGMOG00000019777 #24	ATP11B (ENSGMOG00000008504) #26	ENSGMOG00000008521 #28	ENSGMOG00000032839	ENSGMOG00000008540	ENSGMOG00000008558	ENSGMOG00000014103	ENSGMOG00000030815	ENSGMOG00000003860	ENSGMOG00000028710	MELTF (ENSGMOG00000018637)	NCBP2AS2 (ENSGMOG00000030915)	ENSGMOG00000018655	NCBP2 (ENSGMOG00000018657)
Euacanthomorphacea	ANCESTRAL SPECIES	31	ENSGT00940000155195	ENSGT00940000164211	ENSGT00940000155117.f.a	ENSGT00940000154967.b.b.a	ENSGT00940000154967.b.b.b	ENSGT00940000174597	ENSGT00560000077332	ENSGT00950000182976.b.a	ENSGT00950000182913.B.f	ENSGT00940000164186.a	ENSGT00950000183047.c.b	ENSGT00940000154130.a.a.b	ENSGT00390000015458	ENSGT00950000182865.b.a.b.b.a.a.a	ENSGT00390000013701 #19	ENSGT00950000183189.a.b.a #22	ENSGT00940000154384 #23	ENSGT00940000160614 #24	ENSGT00940000156162.C #26	ENSGT00940000156941 #28	ENSGT00950000182899.C.a	ENSGT00950000182930.B	ENSGT00940000155531.a.a	ENSGT00730000111202	ENSGT00940000154507.t	ENSGT00460000041630	ENSGT00940000157607	ENSGT00390000004674.i.b	ENSGT00390000004674.j	ENSGT00940000169454	ENSGT00940000157064.a.b.a
Pinecone sodierfish	MODERN SPECIES	18	ENSMMDG00005019479	uchl5 (ENSMMDG00005019470)	glrx2 (ENSMMDG00005019466)	b3galt2 (ENSMMDG00005019465)	ENSMMDG00005019461	ENSMMDG00005019458	ENSMMDG00005019437	ENSMMDG00005019423	ENSMMDG00005019412	ENSMMDG00005019407	fnbp1l (ENSMMDG00005019352)	bcar3 (ENSMMDG00005019341)	ENSMMDG00005019337	ENSMMDG00005019335	ENSMMDG00005019330	fxr1 (ENSMMDG00005016938) #22	dnajc19 (ENSMMDG00005016880) #23	sox2 (ENSMMDG00005016876) #24	ATP11B (ENSMMDG00005011889) #26	mccc1 (ENSMMDG00005007241) #28	ENSMMDG00005007138	kng1 (ENSMMDG00005007133)	PIK3CA (ENSMMDG00005007127)	ENSMMDG00005007018	RNF14 (ENSMMDG00005007010)	ENSMMDG00005007006	stxbp3 (ENSMMDG00005006114)	FNDC7 (ENSMMDG00005006091)	ENSMMDG00005006089	ENSMMDG00005006086	ENSMMDG00005006084
Percomorphaceae	ANCESTRAL SPECIES	32	ENSGT00940000157937.b	ENSGT00940000155195	ENSGT00940000164211	ENSGT00940000155117.f.a	ENSGT00940000154967.b.b.a	ENSGT00940000154967.b.b.b	ENSGT00940000174597	ENSGT00560000077332	ENSGT00950000182976.b.a	ENSGT00950000182913.B.f	ENSGT00940000164186.a	ENSGT00950000183047.c.b	ENSGT00940000154130.a.a.b	ENSGT00390000015458	ENSGT00390000013701 #19	ENSGT00950000183189.a.b.a #22	ENSGT00940000154384 #23	ENSGT00940000160614 #24	ENSGT00940000156162.C #26	ENSGT00940000156941 #28	ENSGT00950000182899.C.a	ENSGT00950000182930.B	ENSGT00940000155531.a.a	ENSGT00730000111202	ENSGT00940000154507.t	ENSGT00460000041630	ENSGT00940000157607	ENSGT00390000004674.i.b	ENSGT00390000004674.j	ENSGT00940000169454	ENSGT00940000157064.a.b.a
Tiger tail seahorse	DUPLICATION
Tiger tail seahorse	DUPLICATION
Tiger tail seahorse	MODERN SPECIES	65	naprt (ENSHCOG00000009077)	ENSHCOG00000009087	ENSHCOG00000009206	ADCYAP1R1 (ENSHCOG00000009351)	ENSHCOG00000009385	aspm (ENSHCOG00000009448)	depdc1a (ENSHCOG00000009576)	rpe65b (ENSHCOG00000009617)	si:ch211-198n5.11 (ENSHCOG00000009855)	fnbp1l (ENSHCOG00000009923)	bcar3 (ENSHCOG00000009968)	hps3 (ENSHCOG00000010024)	ENSHCOG00000000316 #19	ttc14 (ENSHCOG00000010117) #19	ENSHCOG00000010144	FXR1 (ENSHCOG00000010198) #22	fxr1 (ENSHCOG00000010273) #22	ENSHCOG00000010298	fxr1 (ENSHCOG00000010337) #22	dnajc19 (ENSHCOG00000010350) #23	ENSHCOG00000010353	sox2 (ENSHCOG00000010386) #24	ENSHCOG00000010410 #26	ATP11B (ENSHCOG00000010454) #26	mccc1 (ENSHCOG00000010503) #28	ENSHCOG00000010517	ENSHCOG00000010526	PIK3CA (ENSHCOG00000010578)	ENSHCOG00000010592	PIK3CA (ENSHCOG00000010611)	ZMAT3 (ENSHCOG00000010624)
Tiger tail seahorse	MODERN SPECIES	65	ADCYAP1R1 (ENSHCOG00000009351)	ENSHCOG00000009385	aspm (ENSHCOG00000009448)	depdc1a (ENSHCOG00000009576)	rpe65b (ENSHCOG00000009617)	si:ch211-198n5.11 (ENSHCOG00000009855)	fnbp1l (ENSHCOG00000009923)	bcar3 (ENSHCOG00000009968)	hps3 (ENSHCOG00000010024)	ENSHCOG00000000316 #19	ttc14 (ENSHCOG00000010117) #19	ENSHCOG00000010144	FXR1 (ENSHCOG00000010198) #22	fxr1 (ENSHCOG00000010273) #22	ENSHCOG00000010298	fxr1 (ENSHCOG00000010337) #22	dnajc19 (ENSHCOG00000010350) #23	ENSHCOG00000010353	sox2 (ENSHCOG00000010386) #24	ENSHCOG00000010410 #26	ATP11B (ENSHCOG00000010454) #26	mccc1 (ENSHCOG00000010503) #28	ENSHCOG00000010517	ENSHCOG00000010526	PIK3CA (ENSHCOG00000010578)	ENSHCOG00000010592	PIK3CA (ENSHCOG00000010611)	ZMAT3 (ENSHCOG00000010624)	ENSHCOG00000010632	ENSHCOG00000010650	ENSHCOG00000010665
Tiger tail seahorse	MODERN SPECIES	65	ENSHCOG00000009087	ENSHCOG00000009206	ADCYAP1R1 (ENSHCOG00000009351)	ENSHCOG00000009385	aspm (ENSHCOG00000009448)	depdc1a (ENSHCOG00000009576)	rpe65b (ENSHCOG00000009617)	si:ch211-198n5.11 (ENSHCOG00000009855)	fnbp1l (ENSHCOG00000009923)	bcar3 (ENSHCOG00000009968)	hps3 (ENSHCOG00000010024)	ENSHCOG00000000316 #19	ttc14 (ENSHCOG00000010117) #19	ENSHCOG00000010144	FXR1 (ENSHCOG00000010198) #22	fxr1 (ENSHCOG00000010273) #22	ENSHCOG00000010298	fxr1 (ENSHCOG00000010337) #22	dnajc19 (ENSHCOG00000010350) #23	ENSHCOG00000010353	sox2 (ENSHCOG00000010386) #24	ENSHCOG00000010410 #26	ATP11B (ENSHCOG00000010454) #26	mccc1 (ENSHCOG00000010503) #28	ENSHCOG00000010517	ENSHCOG00000010526	PIK3CA (ENSHCOG00000010578)	ENSHCOG00000010592	PIK3CA (ENSHCOG00000010611)	ZMAT3 (ENSHCOG00000010624)	ENSHCOG00000010632
Percomorphaceae_B	ANCESTRAL SPECIES	9	ENSGT00940000155195	ENSGT00940000164211	ENSGT00940000155117.f.a	ENSGT00940000154967.b.b.a	ENSGT00940000154967.b.b.b	ENSGT00940000174597	ENSGT00560000077332	ENSGT00950000182976.b.a	ENSGT00950000182913.B.f	ENSGT00940000164186.a	ENSGT00950000183047.c.b	ENSGT00940000154130.a.a.b	ENSGT00390000015458	ENSGT00950000182865.b.a.b.b.a.a.a	ENSGT00390000013701 #19	ENSGT00950000183189.a.b.a #22	ENSGT00940000154384 #23	ENSGT00940000160614 #24	ENSGT00940000156162.C #26	ENSGT00940000156941 #28	ENSGT00950000182899.C.a	ENSGT00950000182930.B	ENSGT00940000155531.a.a	ENSGT00730000111202	ENSGT00940000154507.t	ENSGT00940000178727	ENSGT00460000041630	ENSGT00940000157607	ENSGT00390000004674.i.b	ENSGT00390000004674.j	ENSGT00940000157064.a.b.a
Percomorphaceae_C	ANCESTRAL SPECIES	8	ENSGT00940000154967.b.b.a	ENSGT00940000154386	ENSGT00940000154967.b.b.b	ENSGT00940000174597	ENSGT00560000077332	ENSGT00950000182976.b.a	ENSGT00950000182913.B.f	ENSGT00940000164186.a	ENSGT00950000183047.c.b	ENSGT00940000154130.a.a.b	ENSGT00390000015458	ENSGT00950000182865.b.a.b.b.a.a.a	ENSGT00390000013701 #19	ENSGT01060000252104	ENSGT00940000180153	ENSGT00950000183189.a.b.a #22	ENSGT00940000154384 #23	ENSGT00940000160614 #24	ENSGT00940000156162.C #26	ENSGT00940000156941 #28	ENSGT00950000182899.C.a	ENSGT00950000182930.B	ENSGT00940000155531.a.a	ENSGT00730000111202	ENSGT00940000154507.t	ENSGT00940000178727	ENSGT00460000041630	ENSGT00940000157607	ENSGT00390000004674.i.b	ENSGT00980000198596.B	ENSGT00940000157064.a.b.b.a.a
Eupercaria	ANCESTRAL SPECIES	8	ENSGT00940000154967.b.b.a	ENSGT00940000154967.b.a	ENSGT00940000154386	ENSGT00940000174597	ENSGT00940000154967.b.b.b	ENSGT00560000077332	ENSGT00950000182976.b.a	ENSGT00950000182913.B.f	ENSGT00940000164186.a	ENSGT00950000183047.c.b	ENSGT00940000154130.a.a.b	ENSGT00390000015458	ENSGT00950000182865.b.a.b.b.a.a.a	ENSGT00390000013701 #19	ENSGT01060000252104	ENSGT00950000183189.a.b.a #22	ENSGT00940000154384 #23	ENSGT00940000160614 #24	ENSGT00940000156162.C #26	ENSGT00940000156941 #28	ENSGT00950000182899.C.a	ENSGT00950000182930.B	ENSGT00940000155531.a.a	ENSGT00730000111202	ENSGT00940000154507.t	ENSGT00940000178727	ENSGT00460000041630	ENSGT00940000157607	ENSGT00390000004674.i.b	ENSGT00980000198596.B	ENSGT00940000157064.a.b.b.a.a
Eupecaria_A	ANCESTRAL SPECIES	11	ENSGT00940000164211	ENSGT00940000155117.f.a	ENSGT00940000154967.b.b.a	ENSGT00940000174597	ENSGT00940000154967.b.b.b	ENSGT00560000077332	ENSGT00950000182976.b.a	ENSGT00950000182913.B.f	ENSGT00940000164186.a	ENSGT00950000183047.c.b	ENSGT00940000154130.a.a.b	ENSGT00390000015458	ENSGT00950000182865.b.a.b.b.a.a.a	ENSGT00390000013701 #19	ENSGT01060000252104	ENSGT00950000183189.a.b.a #22	ENSGT00940000154384 #23	ENSGT00940000160614 #24	ENSGT00940000156162.C #26	ENSGT00940000156941 #28	ENSGT00950000182899.C.a	ENSGT00950000182930.B	ENSGT00940000155531.a.a	ENSGT00730000111202	ENSGT00940000154507.t	ENSGT00940000178727	ENSGT00460000041630	ENSGT00940000157607	ENSGT00390000004674.i.b	ENSGT00940000157064.a.b.b.a.a	ENSGT01050000244823.d.b.b.b
Ballan wrasse	DUPLICATION
Ballan wrasse	MODERN SPECIES	620															ttc14 (ENSLBEG00000015175) #19	fxr1 (ENSLBEG00000015038) #22	sox2 (ENSLBEG00000014895) #24
Ballan wrasse	MODERN SPECIES	2497																fxr1 (ENSLBEG00000011791) #22
Eupecaria_B	ANCESTRAL SPECIES	10	ENSGT00940000164211	ENSGT00940000155117.f.a	ENSGT00940000154967.b.b.a	ENSGT00940000174597	ENSGT00940000154386	ENSGT00560000077332	ENSGT00950000182976.b.a	ENSGT00950000182913.B.f	ENSGT00940000164186.a	ENSGT00950000183047.c.b	ENSGT00940000154130.a.a.b	ENSGT00390000015458	ENSGT00950000182865.b.a.b.b.a.a.a	ENSGT00390000013701 #19	ENSGT01060000252104	ENSGT00950000183189.a.b.a #22	ENSGT00940000154384 #23	ENSGT00940000160614 #24	ENSGT00940000156162.C #26	ENSGT00940000156941 #28	ENSGT00950000182899.C.a	ENSGT00950000182930.B	ENSGT00940000155531.a.a	ENSGT00730000111202	ENSGT00940000154507.t	ENSGT00460000041630	ENSGT00940000157607	ENSGT00390000004674.i.b	ENSGT00940000157064.a.b.b.a.a	ENSGT01050000244823.d.b.b.b	ENSGT00390000004798
Eupecaria_C	ANCESTRAL SPECIES	4	ENSGT00940000157937.b	ENSGT00940000155195	ENSGT00940000164211	ENSGT00940000155117.f.a	ENSGT00940000154386	ENSGT00940000174597	ENSGT00560000077332	ENSGT00950000182976.b.a	ENSGT00950000182913.B.f	ENSGT00940000164186.a	ENSGT00950000183047.c.b	ENSGT00940000154130.a.a.b	ENSGT00390000015458	ENSGT00950000182865.b.a.b.b.a.a.a	ENSGT00390000013701 #19	ENSGT00950000183189.a.b.a #22	ENSGT00940000154384 #23	ENSGT00940000160614 #24	ENSGT00940000156162.C #26	ENSGT00940000156941 #28	ENSGT00950000182899.C.a	ENSGT00950000182930.B	ENSGT00940000155531.a.a	ENSGT00730000111202	ENSGT00940000154507.t	ENSGT00460000041630	ENSGT00940000157607	ENSGT00390000004674.i.b	ENSGT00940000157064.a.b.b.a.a	ENSGT01050000244823.d.b.b.b	ENSGT00390000004798
Eupercaria_incertae_sedis	ANCESTRAL SPECIES	3	ENSGT00940000157937.b	ENSGT00940000155195	ENSGT00940000164211	ENSGT00940000155117.f.a	ENSGT00940000154386	ENSGT00940000174597	ENSGT00560000077332	ENSGT00950000182976.b.a	ENSGT00950000182913.B.f	ENSGT00940000164186.a	ENSGT00950000183047.c.b	ENSGT00940000154130.a.a.b	ENSGT00390000015458	ENSGT00950000182865.b.a.b.b.a.a.a	ENSGT00390000013701 #19	ENSGT00950000183189.a.b.a #22	ENSGT00940000154384 #23	ENSGT00940000160614 #24	ENSGT00940000156162.C #26	ENSGT00940000156941 #28	ENSGT00950000182899.C.a	ENSGT00950000182930.B	ENSGT00940000155531.a.a	ENSGT00730000111202	ENSGT00940000154507.t	ENSGT00460000041630	ENSGT00940000157607	ENSGT00390000004674.i.b	ENSGT00940000157064.a.b.b.a.a	ENSGT01050000244823.d.b.b.b	ENSGT00390000004798
European seabass	MODERN SPECIES	17	ENSDLAG00005015366	ENSDLAG00005007978	ENSDLAG00005007930	stxbp3 (ENSDLAG00005006702)	ENSDLAG00005006642	ENSDLAG00005006638	ENSDLAG00005029063	ENSDLAG00005006577	ENSDLAG00005006557	ENSDLAG00005006545	ENSDLAG00005034823	ENSDLAG00005006459	ENSDLAG00005021297	ENSDLAG00005027302	ttc14 (ENSDLAG00005021228) #19	fxr1 (ENSDLAG00005020320) #22	dnajc19 (ENSDLAG00005029415) #23	sox2 (ENSDLAG00005034867) #24	ATP11B (ENSDLAG00005017428) #26	mccc1 (ENSDLAG00005019674) #28	si:ch211-198n5.11 (ENSDLAG00005027011)	ENSDLAG00005016891	depdc1a (ENSDLAG00005016845)	aspm (ENSDLAG00005016604)	ENSDLAG00005028523	ENSDLAG00005030889	ENSDLAG00005016552	b3galt2 (ENSDLAG00005028575)	uchl5 (ENSDLAG00005016459)	ENSDLAG00005016445	RGS13 (ENSDLAG00005028322)
Large yellow croaker	MODERN SPECIES	489	lrp8 (ENSLCRG00005009173)	dmrt2b (ENSLCRG00005009628)	ENSLCRG00005009630	ebna1bp2 (ENSLCRG00005009633)	TMEM125 (ENSLCRG00005009641)	ap1m3 (ENSLCRG00005009670)	tie1 (ENSLCRG00005010424)	mpl (ENSLCRG00005011070)	DDAH1 (ENSLCRG00005011074)	ccn1 (ENSLCRG00005011076)	ZNHIT6 (ENSLCRG00005011077)	ENSLCRG00005011082	hps3 (ENSLCRG00005011090)	ENSLCRG00005011092	ttc14 (ENSLCRG00005011096) #19	fxr1 (ENSLCRG00005011130) #22	dnajc19 (ENSLCRG00005014678) #23	sox2 (ENSLCRG00005014679) #24	ATP11B (ENSLCRG00005014687) #26	mccc1 (ENSLCRG00005015122) #28	ENSLCRG00005017408	ENSLCRG00005017410	ENSLCRG00005017411	PIK3CA (ENSLCRG00005017419)	ENSLCRG00005017430	RNF14 (ENSLCRG00005017434)	ENSLCRG00005017436	stxbp3 (ENSLCRG00005017443)	ENSLCRG00005017550	ENSLCRG00005017551	eaf2 (ENSLCRG00005017553)
Gilthead seabream	MODERN SPECIES	2	uchl5 (ENSSAUG00010012408)	glrx2 (ENSSAUG00010012405)	b3galt2 (ENSSAUG00010012403)	ENSSAUG00010012400	ENSSAUG00010012399	ENSSAUG00010012390	ENSSAUG00010012381	aspm (ENSSAUG00010012325)	depdc1a (ENSSAUG00010012316)	si:ch211-198n5.11 (ENSSAUG00010012112)	rpe65b (ENSSAUG00010012087)	fnbp1l (ENSSAUG00010012084)	bcar3 (ENSSAUG00010011607)	hps3 (ENSSAUG00010011586)	ttc14 (ENSSAUG00010011576) #19	fxr1 (ENSSAUG00010007117) #22	Tim14 (ENSSAUG00010007093) #23	ENSSAUG00010007090	sox2 (ENSSAUG00010007089) #24	ATP11B (ENSSAUG00010006965) #26	mccc1 (ENSSAUG00010002097) #28	ENSSAUG00010001984	ENSSAUG00010001979	PIK3CA (ENSSAUG00010001967)	ENSSAUG00010001961	ENSSAUG00010001957	ENSSAUG00010001956	ENSSAUG00010001893	stxbp3 (ENSSAUG00010001436)	FNDC7 (ENSSAUG00010001386)	ENSSAUG00010001377
Perciformes	ANCESTRAL SPECIES	8	ENSGT00940000164211	ENSGT00940000155117.f.a	ENSGT00940000154967.b.b.a	ENSGT00940000174597	ENSGT00940000154386	ENSGT00560000077332	ENSGT00950000182976.b.a	ENSGT00950000182913.B.f	ENSGT00940000164186.a	ENSGT00950000183047.c.b	ENSGT00940000154130.a.a.b	ENSGT00390000015458	ENSGT00950000182865.b.a.b.b.a.a.a	ENSGT00390000013701 #19	ENSGT01060000252104	ENSGT00950000183189.a.b.a #22	ENSGT00940000154384 #23	ENSGT00940000160614 #24	ENSGT00940000156162.C #26	ENSGT00940000156941 #28	ENSGT00950000182899.C.a	ENSGT00950000182930.B	ENSGT00940000155531.a.a	ENSGT00730000111202	ENSGT00940000154507.t	ENSGT00460000041630	ENSGT00940000157607	ENSGT00390000004674.i.b	ENSGT00940000157064.a.b.b.a.a	ENSGT00390000004798	ENSGT00940000156132.h
Cottioidei	ANCESTRAL SPECIES	5	ENSGT00940000155195	ENSGT00940000164211	ENSGT00940000155117.f.a	ENSGT00940000154967.b.b.a	ENSGT00940000174597	ENSGT00940000154386	ENSGT00560000077332	ENSGT00950000182976.b.a	ENSGT00950000182913.B.f	ENSGT00940000164186.a	ENSGT00950000183047.c.b	ENSGT00940000154130.a.a.b	ENSGT00390000015458	ENSGT00950000182865.b.a.b.b.a.a.a	ENSGT00390000013701 #19	ENSGT00950000183189.a.b.a #22	ENSGT00940000154384 #23	ENSGT00940000160614 #24	ENSGT00940000156162.C #26	ENSGT00940000156941 #28	ENSGT01000000216191	ENSGT00950000182930.B	ENSGT00940000155531.a.a	ENSGT00730000111202	ENSGT00940000154507.t	ENSGT00460000041630	ENSGT00940000157607	ENSGT00390000004674.i.b	ENSGT00390000004798	ENSGT00940000156132.h	ENSGT00940000164927.a
Lumpfish	MODERN SPECIES	19	b3galt2 (ENSCLMG00005016734)	ENSCLMG00005016729	ENSCLMG00005016696	aspm (ENSCLMG00005016693)	depdc1a (ENSCLMG00005016687)	rpe65b (ENSCLMG00005016684)	si:ch211-198n5.11 (ENSCLMG00005016678)	fnbp1l (ENSCLMG00005016346)	bcar3 (ENSCLMG00005016124)	ENSCLMG00005016123	hps3 (ENSCLMG00005016121)	ENSCLMG00005016120	ENSCLMG00005016119	ttc14 (ENSCLMG00005016117) #19	ENSCLMG00005016115	fxr1 (ENSCLMG00005015995) #22	dnajc19 (ENSCLMG00005015992) #23	sox2 (ENSCLMG00005015991) #24	ENSCLMG00005015990	ATP11B (ENSCLMG00005014101) #26	mccc1 (ENSCLMG00005011992) #28	ENSCLMG00005011979	ENSCLMG00005011978	PIK3CA (ENSCLMG00005011927)	ZMAT3 (ENSCLMG00005011814)	ENSCLMG00005011810	ENSCLMG00005011809	ENSCLMG00005011807	lrrc40 (ENSCLMG00005011804)	ENSCLMG00005011803	ENSCLMG00005011801
Stickleback	MODERN SPECIES	8	b3galt2 (ENSGACG00000005881)	ENSGACG00000005883	ENSGACG00000005908	ENSGACG00000005911	ENSGACG00000005919	depdc1a (ENSGACG00000005920)	rpe65b (ENSGACG00000005930)	si:ch211-198n5.11 (ENSGACG00000005939)	fnbp1l (ENSGACG00000005948)	bcar3 (ENSGACG00000005999)	ENSGACG00000006012	hps3 (ENSGACG00000006016)	ttc14 (ENSGACG00000006030) #19	ENSGACG00000006044	ENSGACG00000006048	fxr1 (ENSGACG00000006052) #22	dnajc19 (ENSGACG00000006076) #23	ENSGACG00000006099	sox2 (ENSGACG00000006100) #24	ATP11B (ENSGACG00000006104) #26	mccc1 (ENSGACG00000006125) #28	ENSGACG00000006138	PIK3CA (ENSGACG00000006156)	ZMAT3 (ENSGACG00000006175)	ENSGACG00000006180	LRRC7 (ENSGACG00000006189)	ENSGACG00000006210	ENSGACG00000006216	MELTF (ENSGACG00000006222)	fkbp2 (ENSGACG00000006229)	NCBP2AS2 (ENSGACG00000006237)
Perciformes_a	ANCESTRAL SPECIES	6	ENSGT00940000164211	ENSGT00940000155117.f.a	ENSGT00940000154967.b.b.a	ENSGT00940000174597	ENSGT00940000154386	ENSGT00560000077332	ENSGT00950000182976.b.a	ENSGT00950000182913.B.f	ENSGT00940000164186.a	ENSGT00950000183047.c.b	ENSGT00940000154130.a.a.b	ENSGT00390000015458	ENSGT00950000182865.b.a.b.b.a.a.a	ENSGT00390000013701 #19	ENSGT01060000252104	ENSGT00950000183189.a.b.a #22	ENSGT00940000154384 #23	ENSGT00940000156162.C #26	ENSGT00940000156941 #28	ENSGT00950000182899.C.a	ENSGT00950000182930.B	ENSGT00940000155531.a.a	ENSGT00730000111202	ENSGT00940000154507.t	ENSGT00460000041630	ENSGT00940000157607	ENSGT00390000004674.i.b	ENSGT00940000157064.a.b.b.a.a	ENSGT00390000004798	ENSGT00940000156132.h	ENSGT00940000164927.a
Pike perch	MODERN SPECIES	59	ENSSLUG00000010772	aspm (ENSSLUG00000010814)	ENSSLUG00000011357	tm4sf4 (ENSSLUG00000011363)	ENSSLUG00000011367	depdc1a (ENSSLUG00000011374)	rpe65b (ENSSLUG00000011422)	si:ch211-198n5.11 (ENSSLUG00000012316)	fnbp1l (ENSSLUG00000012423)	ENSSLUG00000012471	bcar3 (ENSSLUG00000012491)	hps3 (ENSSLUG00000013002)	ENSSLUG00000013012	ttc14 (ENSSLUG00000009678) #19	ENSSLUG00000009681	fxr1 (ENSSLUG00000009708) #22	dnajc19 (ENSSLUG00000010014) #23	ATP11B (ENSSLUG00000010144) #26	mccc1 (ENSSLUG00000013622) #28	ENSSLUG00000014011	kng1 (ENSSLUG00000014020)	PIK3CA (ENSSLUG00000014031)	ZMAT3 (ENSSLUG00000014062)	ENSSLUG00000014164	ENSSLUG00000014175	stxbp3 (ENSSLUG00000014209)	ENSSLUG00000014440	ENSSLUG00000014445	henmt1 (ENSSLUG00000014450)	fam102bb (ENSSLUG00000014456)	slc25a24 (ENSSLUG00000014480)
Channel bull blenny	MODERN SPECIES	18	ENSCGOG00000000699	ENSCGOG00000000722	aspm (ENSCGOG00000000756)	ENSCGOG00000000909	rpe65c (ENSCGOG00000000924)	depdc1a (ENSCGOG00000001060)	si:ch211-198n5.11 (ENSCGOG00000001067)	fnbp1l (ENSCGOG00000001074)	bcar3 (ENSCGOG00000001164)	hps3 (ENSCGOG00000001187)	ENSCGOG00000001197	ENSCGOG00000001199	ENSCGOG00000001200	ENSCGOG00000001201	ttc14 (ENSCGOG00000001210) #19	fxr1 (ENSCGOG00000001380) #22	dnajc19 (ENSCGOG00000002325) #23	ENSCGOG00000002332	ENSCGOG00000002335	ATP11B (ENSCGOG00000002429) #26	mccc1 (ENSCGOG00000004793) #28	ENSCGOG00000006972	ENSCGOG00000006973	PIK3CA (ENSCGOG00000006989)	ZMAT3 (ENSCGOG00000007325)	ENSCGOG00000007392	ENSCGOG00000007396	ENSCGOG00000007397	stxbp3 (ENSCGOG00000007419)	ENSCGOG00000009200	FNDC7 (ENSCGOG00000009208)
Tetraodontidae	DUPLICATION
Tetraodontidae	ANCESTRAL SPECIES																	ENSGT00950000183189.a.b.a.g #22
Tetraodon	MODERN SPECIES	4	ENSTNIG00000008797	atp6v1e1a (ENSTNIG00000008796)	bcl2l13 (ENSTNIG00000008795)	wee2 (ENSTNIG00000008794)	dennd11 (ENSTNIG00000008793)	agk (ENSTNIG00000008792)	nup205 (ENSTNIG00000008791)	fgd4a (ENSTNIG00000008790)	BICD1 (ENSTNIG00000008789)	slc23a4 (ENSTNIG00000008788)	ENSTNIG00000008787	TMTC2 (ENSTNIG00000008786)	CRACR2A (ENSTNIG00000008785)	ENSTNIG00000008784	ENSTNIG00000008783	ENSTNIG00000006816 #22	TSPAN9 (ENSTNIG00000019258)	tspan33b (ENSTNIG00000019257)	ttc38 (ENSTNIG00000019256)	ENSTNIG00000000532	mical3a (ENSTNIG00000000566)	ENSTNIG00000019255	hipk2 (ENSTNIG00000019254)	si:dkey-24l11.2 (ENSTNIG00000019253)	kti12 (ENSTNIG00000019252)	znf592 (ENSTNIG00000019251)	slc28a1 (ENSTNIG00000019250)	ENSTNIG00000019249	ENSTNIG00000019248	FRMD5 (ENSTNIG00000019247)	BLM (ENSTNIG00000019246)
Tetraodontidae	ANCESTRAL SPECIES	5	ENSGT00510000046975.b	ENSGT00950000183014.f.b.b.a.a	ENSGT00950000183044.a.b	ENSGT00390000004681.a.a	ENSGT00940000154573	ENSGT00740000115898	ENSGT00940000156211.a.a	ENSGT00440000033640.h.b	ENSGT00940000162303.a.a	ENSGT00940000163866.a.b	ENSGT00940000162937.a.a	ENSGT00390000010872	ENSGT00940000166222	ENSGT00940000157153.x	ENSGT00390000013701 #19	ENSGT00950000183189.a.b.a.h #22	ENSGT00940000154384 #23	ENSGT00940000160614 #24	ENSGT00940000156162.C.f #26	ENSGT00940000156941 #28	ENSGT00950000182899.C.a	ENSGT00950000182930.B	ENSGT00940000155531.a.a	ENSGT00730000111202	ENSGT00940000154507.t	ENSGT00460000041630	ENSGT00940000157607	ENSGT00390000004674.i.b	ENSGT00980000198596.B	ENSGT00940000157064.a.b.b.a.a	ENSGT01050000244823.d.b.b.b
Fugu	MODERN SPECIES	12	pycr3 (ENSTRUG00000006233)	bmb (ENSTRUG00000022483)	GFUS (ENSTRUG00000006484)	serpinb1 (ENSTRUG00000006831)	MYLK4 (ENSTRUG00000007027)	gmds (ENSTRUG00000023830)	foxc1b (ENSTRUG00000007340)	ENSTRUG00000007367	foxq1b (ENSTRUG00000001789)	exoc2 (ENSTRUG00000001810)	ENSTRUG00000021519	ENSTRUG00000002946	ENSTRUG00000003462	ENSTRUG00000026690	ttc14 (ENSTRUG00000001224) #19	fxr1 (ENSTRUG00000003486) #22	dnajc19 (ENSTRUG00000004352) #23	sox2 (ENSTRUG00000004861) #24	ENSTRUG00000031205 #26	ATP11B (ENSTRUG00000002878) #26	ENSTRUG00000033406 #26	mccc1 (ENSTRUG00000003436) #28	ENSTRUG00000024510	ENSTRUG00000003951	PIK3CA (ENSTRUG00000004021)	ENSTRUG00000031285	ENSTRUG00000020845	ENSTRUG00000005137	stxbp3 (ENSTRUG00000005412)	FNDC7 (ENSTRUG00000006252)	ENSTRUG00000029469
Tetraodon	MODERN SPECIES		NOS1AP (ENSTNIG00000008233)	ENSTNIG00000008232	pycr3 (ENSTNIG00000008231)	GFUS (ENSTNIG00000008228)	ENSTNIG00000008227	GFUS (ENSTNIG00000008230)	SERPINB1 (ENSTNIG00000008229)	MYLK4 (ENSTNIG00000008226)	gmds (ENSTNIG00000008225)	foxc1b (ENSTNIG00000001080)	ENSTNIG00000008224	exoc2 (ENSTNIG00000008223)	ENSTNIG00000008222	ENSTNIG00000004324	ttc14 (ENSTNIG00000003789) #19	fxr1 (ENSTNIG00000003790) #22	dnajc19 (ENSTNIG00000003791) #23	sox2 (ENSTNIG00000003970) #24	ATP11B (ENSTNIG00000006777) #26	mccc1 (ENSTNIG00000006778) #28	ENSTNIG00000006779	PIK3CA (ENSTNIG00000006780)	ZMAT3 (ENSTNIG00000006781)	ENSTNIG00000006782	ENSTNIG00000006783	stxbp3 (ENSTNIG00000006784)	ENSTNIG00000006785	ENSTNIG00000006982	ENSTNIG00000006786	ENSTNIG00000005506	henmt1 (ENSTNIG00000003313)
Percomorphaceae_D	ANCESTRAL SPECIES	8	ENSGT00940000154967.b.b.a	ENSGT00940000154386	ENSGT00940000154967.b.b.b	ENSGT00940000174597	ENSGT00560000077332	ENSGT00950000182976.b.a	ENSGT00950000182913.B.f	ENSGT00940000164186.a	ENSGT00950000183047.c.b	ENSGT00940000154130.a.a.b	ENSGT00390000015458	ENSGT00950000182865.b.a.b.b.a.a.a	ENSGT00390000013701 #19	ENSGT01060000252104	ENSGT00940000180153	ENSGT00950000183189.a.b.a #22	ENSGT00940000154384 #23	ENSGT00940000160614 #24	ENSGT00940000156162.C #26	ENSGT00940000156941 #28	ENSGT00950000182899.C.a	ENSGT00950000182930.B	ENSGT00940000155531.a.a	ENSGT00730000111202	ENSGT00940000154507.t	ENSGT00460000041630	ENSGT00940000157607	ENSGT00390000004674.i.b	ENSGT00980000198596.B	ENSGT00390000004674.j	ENSGT00940000157064.a.b.b.a.a
Anabantaria	ANCESTRAL SPECIES	7	ENSGT00940000164211	ENSGT00940000155117.f.a	ENSGT00940000154967.b.b.a	ENSGT00940000154386	ENSGT00940000154967.b.b.b	ENSGT00940000174597	ENSGT00560000077332	ENSGT00950000182976.b.a	ENSGT00950000182913.B.f	ENSGT00940000164186.a	ENSGT00950000183047.c.b	ENSGT00940000154130.a.a.b	ENSGT00390000015458	ENSGT00980000203290	ENSGT00390000013701 #19	ENSGT00950000183189.a.b.a #22	ENSGT00940000154384 #23	ENSGT00940000160614 #24	ENSGT00940000156162.C #26	ENSGT00940000156941 #28	ENSGT00950000182899.C.a	ENSGT00950000182930.B	ENSGT00940000155531.a.a	ENSGT00730000111202	ENSGT00940000154507.t	ENSGT00460000041630	ENSGT00940000157607	ENSGT00390000004674.i.b	ENSGT00940000157064.a.b.b.a.a	ENSGT00390000004798	ENSGT00940000156132.h
Anabantoidei	ANCESTRAL SPECIES	6	ENSGT00940000155195	ENSGT00940000164211	ENSGT00940000155117.f.a	ENSGT00940000154386	ENSGT00940000154967.b.b.b	ENSGT00940000174597	ENSGT00560000077332	ENSGT00950000182976.b.a	ENSGT00950000182913.B.f	ENSGT00940000164186.a	ENSGT00950000183047.c.b	ENSGT00940000154130.a.a.b	ENSGT00390000015458	ENSGT00980000203290	ENSGT00390000013701 #19	ENSGT00950000183189.a.b.a #22	ENSGT00940000154384 #23	ENSGT00940000160614 #24	ENSGT00940000156162.C #26	ENSGT00940000156941 #28	ENSGT00950000182899.C.a	ENSGT00950000182930.B	ENSGT00940000155531.a.a	ENSGT00730000111202	ENSGT00940000154507.t	ENSGT00460000041630	ENSGT00940000157607	ENSGT00390000004674.i.b	ENSGT00940000157064.a.b.b.a.a	ENSGT00390000004798	ENSGT00940000156132.h
Climbing perch	MODERN SPECIES	17	b3galt2 (ENSATEG00000001043)	ENSATEG00000027725	ENSATEG00000000392	ENSATEG00000000713	ENSATEG00000026162	ENSATEG00000028555	ENSATEG00000026295	aspm (ENSATEG00000000379)	depdc1a (ENSATEG00000000365)	ENSATEG00000000298	si:ch211-198n5.11 (ENSATEG00000000222)	ENSATEG00000000143	ENSATEG00000000123	ENSATEG00000000110	ttc14 (ENSATEG00000000101) #19	fxr1 (ENSATEG00000022488) #22	dnajc19 (ENSATEG00000000021) #23	ATP11B (ENSATEG00000022414) #26	mccc1 (ENSATEG00000022375) #28	ENSATEG00000022365	ENSATEG00000022305	ENSATEG00000022254	ENSATEG00000022244	ENSATEG00000022229	ENSATEG00000022213	stxbp3 (ENSATEG00000022183)	ENSATEG00000022164	ENSATEG00000030134	ENSATEG00000022128	ENSATEG00000022099	ENSATEG00000022075
Siamese fighting fish	MODERN SPECIES	15	uchl5 (ENSBSLG00000009763)	glrx2 (ENSBSLG00000009688)	b3galt2 (ENSBSLG00000009583)	ENSBSLG00000009576	ENSBSLG00000009540	ENSBSLG00000009533	aspm (ENSBSLG00000009159)	depdc1a (ENSBSLG00000009033)	RPE65 (ENSBSLG00000008855)	si:ch211-198n5.11 (ENSBSLG00000008830)	fnbp1l (ENSBSLG00000008642)	bcar3 (ENSBSLG00000008468)	ENSBSLG00000008414	hps3 (ENSBSLG00000008206)	ttc14 (ENSBSLG00000008115) #19	fxr1 (ENSBSLG00000005633) #22	dnajc19 (ENSBSLG00000004844) #23	sox2 (ENSBSLG00000004745) #24	sox2 (ENSBSLG00000004255) #24	ATP11B (ENSBSLG00000003903) #26	mccc1 (ENSBSLG00000002699) #28	ENSBSLG00000002494	ENSBSLG00000002480	PIK3CA (ENSBSLG00000002314)	ENSBSLG00000002185	ENSBSLG00000001857	ENSBSLG00000001848	ZMAT3 (ENSBSLG00000001831)	ENSBSLG00000001819	ENSBSLG00000001806	stxbp3 (ENSBSLG00000001607)
Zig-zag eel	MODERN SPECIES	18	RGS13 (ENSMAMG00000025084)	ENSMAMG00000013165	uchl5 (ENSMAMG00000013126)	glrx2 (ENSMAMG00000013113)	b3galt2 (ENSMAMG00000013098)	cfh (ENSMAMG00000012979)	ENSMAMG00000028004	aspm (ENSMAMG00000012926)	depdc1a (ENSMAMG00000012900)	ENSMAMG00000012864	si:ch211-198n5.11 (ENSMAMG00000012852)	ENSMAMG00000012800	ENSMAMG00000012752	ENSMAMG00000012718	ttc14 (ENSMAMG00000012687) #19	fxr1 (ENSMAMG00000012607) #22	dnajc19 (ENSMAMG00000012673) #23	sox2 (ENSMAMG00000012589) #24	ATP11B (ENSMAMG00000012551) #26	mccc1 (ENSMAMG00000012532) #28	ENSMAMG00000012509	ENSMAMG00000012500	ENSMAMG00000012399	ENSMAMG00000012349	ENSMAMG00000012343	ENSMAMG00000012326	stxbp3 (ENSMAMG00000012303)	ENSMAMG00000012225	ENSMAMG00000012208	HENMT1 (ENSMAMG00000012144)	ENSMAMG00000012116
Carangaria	ANCESTRAL SPECIES	7	ENSGT00940000154967.b.b.a	ENSGT00940000154967.b.b.b	ENSGT00940000154386	ENSGT00940000174597	ENSGT00560000077332	ENSGT00950000182976.b.a	ENSGT00950000182913.B.f	ENSGT00940000164186.a	ENSGT00950000183047.c.b	ENSGT00940000154130.a.a.b	ENSGT00390000015458	ENSGT00950000182865.b.a.b.b.a.a.a	ENSGT00390000013701 #19	ENSGT01060000252104	ENSGT00940000180153	ENSGT00950000183189.a.b.a #22	ENSGT00940000154384 #23	ENSGT00940000160614 #24	ENSGT00940000156162.C #26	ENSGT00940000156941 #28	ENSGT00950000182899.C.a	ENSGT00950000182930.B	ENSGT00940000155531.a.a	ENSGT00730000111202	ENSGT00940000154507.t	ENSGT00460000041630	ENSGT00940000157607	ENSGT00390000004674.i.b	ENSGT00980000198596.B	ENSGT00940000157064.a.b.b.a.a	ENSGT01050000244823.d.b.b.b
Carangaria_A	ANCESTRAL SPECIES	3	ENSGT00940000154967.b.b.a	ENSGT00940000154967.b.b.b	ENSGT00980000199212	ENSGT00940000154386	ENSGT00560000077332	ENSGT00950000182976.b.a	ENSGT00950000182913.B.f	ENSGT00940000164186.a	ENSGT00950000183047.c.b	ENSGT00940000154130.a.a.b	ENSGT00390000015458	ENSGT00950000182865.b.a.b.b.a.a.a	ENSGT00390000013701 #19	ENSGT01060000252104	ENSGT00940000180153	ENSGT00950000183189.a.b.a #22	ENSGT00940000154384 #23	ENSGT00940000160614 #24	ENSGT00940000156162.C #26	ENSGT00940000156941 #28	ENSGT00950000182899.C.a	ENSGT00950000182930.B	ENSGT00940000155531.a.a	ENSGT00730000111202	ENSGT00940000154507.t	ENSGT00460000041630	ENSGT00940000157607	ENSGT00390000004674.i.b	ENSGT00940000157064.a.b.b.a.a	ENSGT01050000244823.d.b.b.b	ENSGT00390000004798
Seriola	ANCESTRAL SPECIES		ENSGT00940000155117.f.a	ENSGT00940000154967.b.b.a	ENSGT00940000154967.b.b.b	ENSGT00980000199212	ENSGT00560000077332	ENSGT00950000182976.b.a	ENSGT00950000182913.B.f	ENSGT00940000164186.a	ENSGT00950000183047.c.b	ENSGT00940000154130.a.a.b	ENSGT00390000015458	ENSGT00950000182865.b.a.b.b.a.a.a	ENSGT00390000013701 #19	ENSGT01060000252104	ENSGT00940000180153	ENSGT00950000183189.a.b.a #22	ENSGT00940000154384 #23	ENSGT00940000160614 #24	ENSGT00940000156162.C #26	ENSGT00940000156941 #28	ENSGT00950000182899.C.a	ENSGT00950000182930.B	ENSGT00940000155531.a.a	ENSGT00730000111202	ENSGT00940000154507.t	ENSGT00460000041630	ENSGT00940000157607	ENSGT00390000004674.i.b	ENSGT00940000157064.a.b.b.a.a	ENSGT01050000244823.d.b.b.b	ENSGT00390000004798
Greater amberjack	MODERN SPECIES						aspm (ENSSDUG00000017053)	depdc1a (ENSSDUG00000017031)	rpe65b (ENSSDUG00000016938)	si:ch211-198n5.11 (ENSSDUG00000016890)	fnbp1l (ENSSDUG00000016812)	ENSSDUG00000016801	bcar3 (ENSSDUG00000016748)	hps3 (ENSSDUG00000016706)	ENSSDUG00000016687	ttc14 (ENSSDUG00000016642) #19	ENSSDUG00000016630	fxr1 (ENSSDUG00000016557) #22	dnajc19 (ENSSDUG00000016541) #23	sox2 (ENSSDUG00000016532) #24	ATP11B (ENSSDUG00000016508) #26	mccc1 (ENSSDUG00000016424) #28	ENSSDUG00000016401	ENSSDUG00000016284	PIK3CA (ENSSDUG00000016208)	ZMAT3 (ENSSDUG00000016188)	ENSSDUG00000016156	ENSSDUG00000016127	stxbp3 (ENSSDUG00000016067)	ENSSDUG00000016050	ENSSDUG00000015941	henmt1 (ENSSDUG00000015914)	fam102bb (ENSSDUG00000015867)
Yellowtail amberjack	MODERN SPECIES	3176	uchl5 (ENSSLDG00000017814)	glrx2 (ENSSLDG00000017890)	b3galt2 (ENSSLDG00000017900)	cfhl1 (ENSSLDG00000017908)	ENSSLDG00000017934	ENSSLDG00000017953	aspm (ENSSLDG00000017974)	depdc1a (ENSSLDG00000018016)	rpe65b (ENSSLDG00000018072)	si:ch211-198n5.11 (ENSSLDG00000018130)	fnbp1l (ENSSLDG00000018163)	bcar3 (ENSSLDG00000018222)	hps3 (ENSSLDG00000018261)	ENSSLDG00000018350	ENSSLDG00000018364	fxr1 (ENSSLDG00000018386) #22	dnajc19 (ENSSLDG00000018409) #23	sox2 (ENSSLDG00000018420) #24	ATP11B (ENSSLDG00000018445) #26	mccc1 (ENSSLDG00000018498) #28	ENSSLDG00000018523	ENSSLDG00000018538	PIK3CA (ENSSLDG00000018558)	ENSSLDG00000018593	ENSSLDG00000018611	ENSSLDG00000018641	ENSSLDG00000018661	stxbp3 (ENSSLDG00000018702)	FNDC7 (ENSSLDG00000018747)	ENSSLDG00000018774	ENSSLDG00000018793
Barramundi perch	MODERN SPECIES	388															ENSLCAG00010002617 #19	fxr1 (ENSLCAG00010002622) #22	dnajc19 (ENSLCAG00010002626) #23	sox2 (ENSLCAG00010002633) #24	ATP11B (ENSLCAG00010002723) #26
Pleuronectoidei	ANCESTRAL SPECIES	20	ENSGT00940000155195	ENSGT00940000164211	ENSGT00940000155117.f.a	ENSGT00940000154967.b.b.a	ENSGT00940000154386	ENSGT00940000174597	ENSGT00560000077332	ENSGT00950000182976.b.a	ENSGT00950000182913.B.f	ENSGT00940000164186.a	ENSGT00950000183047.c.b	ENSGT00940000154130.a.a.b	ENSGT00390000015458	ENSGT00950000182865.b.a.b.b.a.a.a	ENSGT00390000013701 #19	ENSGT00950000183189.a.b.a #22	ENSGT00940000154384 #23	ENSGT00940000160614 #24	ENSGT00940000156162.C #26	ENSGT00940000156941 #28	ENSGT01000000216191	ENSGT00940000169190	ENSGT00950000182930.B	ENSGT00940000155531.a.a	ENSGT00730000111202	ENSGT00940000154507.t	ENSGT00460000041630	ENSGT00940000157607	ENSGT00390000004674.i.b	ENSGT00980000198596.B	ENSGT00940000157064.a.b.b.a.a
Tongue sole	MODERN SPECIES	11	glrx2 (ENSCSEG00000001831)	b3galt2 (ENSCSEG00000001829)	cfh (ENSCSEG00000001810)	ENSCSEG00000001805	aspm (ENSCSEG00000001749)	ENSCSEG00000001739	depdc1a (ENSCSEG00000001736)	rpe65b (ENSCSEG00000001723)	si:ch211-198n5.11 (ENSCSEG00000001712)	fnbp1l (ENSCSEG00000001689)	bcar3 (ENSCSEG00000001676)	hps3 (ENSCSEG00000001648)	ttc14 (ENSCSEG00000001645) #19	ENSCSEG00000001642	dnajc19 (ENSCSEG00000001630) #23	fxr1 (ENSCSEG00000001597) #22	sox2 (ENSCSEG00000001590) #24	ATP11B (ENSCSEG00000001572) #26	ENSCSEG00000001563	ENSCSEG00000001559	PATJ (ENSCSEG00000001551)	tm2d1 (ENSCSEG00000001546)	nfia (ENSCSEG00000001541)	frem1b (ENSCSEG00000001512)	SAMD9 (ENSCSEG00000001506)	ttll9 (ENSCSEG00000001500)	nrd1b (ENSCSEG00000001310)	RAB3B (ENSCSEG00000001290)	ENSCSEG00000001287	ENSCSEG00000001281	orc1 (ENSCSEG00000001275)
Turbot	MODERN SPECIES	3	b3galt2 (ENSSMAG00000018609)	ENSSMAG00000034768	ENSSMAG00000018628	ENSSMAG00000026125	aspm (ENSSMAG00000018889)	depdc1a (ENSSMAG00000019006)	ENSSMAG00000019019	ENSSMAG00000022429	si:ch211-198n5.11 (ENSSMAG00000019050)	ENSSMAG00000019085	ENSSMAG00000019102	ENSSMAG00000019148	ENSSMAG00000019215	ENSSMAG00000023012	ttc14 (ENSSMAG00000019224) #19	fxr1 (ENSSMAG00000019240) #22	dnajc19 (ENSSMAG00000019301) #23	sox2 (ENSSMAG00000019309) #24	ENSSMAG00000019337	ENSSMAG00000027499	ENSSMAG00000035807	ENSSMAG00000019363	ENSSMAG00000019381	stxbp3 (ENSSMAG00000019435)	ENSSMAG00000019460	ENSSMAG00000023351	ENSSMAG00000037924	ENSSMAG00000019534	ENSSMAG00000019540	ENSSMAG00000019551	kng1 (ENSSMAG00000019641)
Ovalentaria	ANCESTRAL SPECIES	9	ENSGT00940000164211	ENSGT00940000155117.f.a	ENSGT00940000154386	ENSGT00940000154967.b.b.b	ENSGT00940000154967.b.b.a	ENSGT00940000174597	ENSGT00560000077332	ENSGT00950000182976.b.a	ENSGT00950000182913.B.f	ENSGT00940000164186.a	ENSGT00950000183047.c.b	ENSGT00940000154130.a.a.b	ENSGT00390000015458	ENSGT00950000182865.b.a.b.b.a.a.a	ENSGT00390000013701 #19	ENSGT00950000183189.a.b.a #22	ENSGT00940000154384 #23	ENSGT00940000160614 #24	ENSGT00940000156162.C #26	ENSGT00940000156941 #28	ENSGT00950000182899.C.a	ENSGT00950000182930.B	ENSGT00940000155531.a.a	ENSGT00730000111202	ENSGT00940000154507.t	ENSGT00940000178727	ENSGT00460000041630	ENSGT00940000157607	ENSGT00390000004674.i.b	ENSGT00390000004674.j	ENSGT00940000157064.a.b.a
Atherinomorphae	ANCESTRAL SPECIES	7	ENSGT00940000155195	ENSGT00940000164211	ENSGT00940000155117.f.a	ENSGT00940000154967.b.b.a	ENSGT00940000154967.b.b.b	ENSGT00940000174597	ENSGT00560000077332	ENSGT00950000182976.b.a	ENSGT00950000182913.B.f	ENSGT00940000164186.a	ENSGT00950000183047.c.b	ENSGT00940000154130.a.a.b	ENSGT00390000015458	ENSGT00950000182865.b.a.b.b.a.a.a	ENSGT00390000013701 #19	ENSGT00950000183189.a.b.a #22	ENSGT00940000154384 #23	ENSGT00940000160614 #24	ENSGT00940000156162.C #26	ENSGT00940000156941 #28	ENSGT00950000182899.C.a	ENSGT00950000182930.B	ENSGT00940000155531.a.a	ENSGT00730000111202	ENSGT00940000154507.t	ENSGT00940000178727	ENSGT00460000041630	ENSGT00940000157607	ENSGT00390000004674.i.b	ENSGT00940000157064.a.b.a	ENSGT00940000157064.a.b.b.a.a
Cyprinodontiformes	ANCESTRAL SPECIES	7	ENSGT00940000157937.b.d	ENSGT00940000155195	ENSGT00940000164211	ENSGT00940000155117.f.a	ENSGT00940000154967.b.b.a	ENSGT00940000174597	ENSGT00560000077332	ENSGT00950000182976.b.a	ENSGT00950000182913.B.f	ENSGT00940000164186.a	ENSGT00950000183047.c.b	ENSGT00940000154130.a.a.b	ENSGT00390000015458	ENSGT00950000182865.b.a.b.b.a.a.a	ENSGT00390000013701 #19	ENSGT00950000183189.a.b.a #22	ENSGT00940000154384 #23	ENSGT00940000160614 #24	ENSGT00940000156162.C #26	ENSGT00940000156941 #28	ENSGT00950000182899.C.a	ENSGT00950000182930.B	ENSGT00940000155531.a.a	ENSGT00730000111202	ENSGT00940000154507.t	ENSGT00940000178727	ENSGT00460000041630	ENSGT00940000157607	ENSGT00390000004674.i.b	ENSGT00940000157064.a.b.a	ENSGT00940000157064.a.b.b.a.a
Aplocheiloidei	ANCESTRAL SPECIES	3	ENSGT00940000157937.b.d	ENSGT00940000155195	ENSGT00940000164211	ENSGT00940000155117.f.a	ENSGT00940000154967.b.b.a	ENSGT00940000174597	ENSGT00560000077332	ENSGT00950000182976.b.a	ENSGT00950000182913.B.f	ENSGT00940000164186.a	ENSGT00950000183047.c.b	ENSGT00940000154130.a.a.b	ENSGT00390000015458	ENSGT00950000182865.b.a.b.b.a.a.a	ENSGT00390000013701 #19	ENSGT00950000183189.a.b.a #22	ENSGT00940000154384 #23	ENSGT00940000160614 #24	ENSGT00940000156162.C #26	ENSGT00940000156941 #28	ENSGT00950000182899.C.a	ENSGT00950000182930.B	ENSGT00940000155531.a.a	ENSGT00730000111202	ENSGT00940000154507.t	ENSGT00940000178727	ENSGT00460000041630	ENSGT00940000157607	ENSGT00390000004674.i.b	ENSGT00940000157064.a.b.a	ENSGT00940000157064.a.b.b.a.a
Mangrove rivulus	MODERN SPECIES	356															ttc14 (ENSKMAG00000004657) #19	fxr1 (ENSKMAG00000004687) #22	dnajc19 (ENSKMAG00000004753) #23	ENSKMAG00000004775	sox2 (ENSKMAG00000004796) #24	ATP11B (ENSKMAG00000004892) #26
Turquoise killifish	MODERN SPECIES	1626	UCHL5 (ENSNFUG00015009918)	GLRX2 (ENSNFUG00015009999)	B3GALT2 (ENSNFUG00015010014)	ENSNFUG00015010019	ENSNFUG00015014048	aspm (ENSNFUG00015014069)	ENSNFUG00015014218	ENSNFUG00015014225	ENSNFUG00015014233	depdc1a (ENSNFUG00015014246)	rpe65b (ENSNFUG00015014334)	Nfu_g_1_002367 (ENSNFUG00015014722)	fnbp1l (ENSNFUG00015014883)	BCAR3 (ENSNFUG00015015037)	hps3 (ENSNFUG00015015133)	fxr1 (ENSNFUG00015015365) #22	DNAJC19 (ENSNFUG00015017077) #23	ENSNFUG00015017098	ENSNFUG00015017106	ATP11B (ENSNFUG00015017152) #26	MCCC1 (ENSNFUG00015017726) #28	ENSNFUG00015019482	ENSNFUG00015019487	KNG1 (ENSNFUG00015019491)	PIK3CA (ENSNFUG00015019503)	BX548160.2 (ENSNFUG00015019542)	ENSNFUG00015019547	ENSNFUG00015019556	ENSNFUG00015019560	ENSNFUG00015019565	STXBP3 (ENSNFUG00015019624)
Cyprinodontoidei	ANCESTRAL SPECIES	29		ENSGT00940000166148	ENSGT00390000018845.f	ENSGT00390000014626	ENSGT00940000173859	ENSGT01050000244902.a.a.a.b	ENSGT00560000077332	ENSGT00950000182976.b.a	ENSGT00950000182913.B.f	ENSGT00940000164186.a	ENSGT00950000183047.c.b	ENSGT00940000154130.a.a.b	ENSGT00390000015458	ENSGT00950000182865.b.a.b.b.a.a.a	ENSGT00390000013701 #19	ENSGT00950000183189.a.b.a #22	ENSGT00940000154384 #23	ENSGT00940000160614 #24	ENSGT00940000156162.C #26	ENSGT00940000156941 #28	ENSGT00950000182899.C.a	ENSGT00950000182930.B	ENSGT00940000155531.a.a	ENSGT00730000111202	ENSGT00940000154507.t	ENSGT00460000041630	ENSGT00940000157607	ENSGT00390000004674.i.b	ENSGT00940000157064.a.b.b.a.a	ENSGT00390000004798	ENSGT00940000156132.h
Poeciliinae	ANCESTRAL SPECIES	7	ENSGT00940000156988	ENSGT00940000166148	ENSGT00390000018845.f	ENSGT00390000014626	ENSGT00940000173859	ENSGT01050000244902.a.a.a.b	ENSGT00560000077332	ENSGT00950000182976.b.a	ENSGT00950000182913.B.f	ENSGT00940000164186.a	ENSGT00950000183047.c.b	ENSGT00940000154130.a.a.b	ENSGT00390000015458	ENSGT00950000182865.b.a.b.b.a.a.a	ENSGT00390000013701 #19	ENSGT00950000183189.a.b.a #22	ENSGT00940000154384 #23	ENSGT00940000160614 #24	ENSGT00940000156162.C #26	ENSGT00940000156941 #28	ENSGT00950000182899.C.a	ENSGT00950000182930.B	ENSGT00940000155531.a.a	ENSGT00730000111202	ENSGT00940000154507.t	ENSGT00460000041630	ENSGT00940000157607	ENSGT00390000004674.i.b	ENSGT00940000157064.a.b.b.a.a	ENSGT00390000004798	ENSGT00940000156132.h
Poecilia	ANCESTRAL SPECIES	1	ENSGT00940000156988	ENSGT00940000166148	ENSGT00390000018845.f	ENSGT00390000014626	ENSGT00940000173859	ENSGT01050000244902.a.a.a.b	ENSGT00560000077332	ENSGT00950000182976.b.a	ENSGT00950000182913.B.f	ENSGT00940000164186.a	ENSGT00950000183047.c.b	ENSGT00940000154130.a.a.b	ENSGT00390000015458	ENSGT00950000182865.b.a.b.b.a.a.a	ENSGT00390000013701 #19	ENSGT00950000183189.a.b.a #22	ENSGT00940000154384 #23	ENSGT00940000160614 #24	ENSGT00940000156162.C #26	ENSGT00940000156941 #28	ENSGT00950000182899.C.a	ENSGT00950000182930.B	ENSGT00940000155531.a.a	ENSGT00730000111202	ENSGT00940000154507.t	ENSGT00460000041630	ENSGT00940000157607	ENSGT00390000004674.i.b	ENSGT00940000157064.a.b.b.a.a.e	ENSGT00390000004798	ENSGT00940000156132.h
NAME_6	ANCESTRAL SPECIES	387									ENSGT00950000182913.B.f	ENSGT00940000164186.a	ENSGT00950000183047.c.b	ENSGT00940000154130.a.a.b	ENSGT00390000015458	ENSGT00950000182865.b.a.b.b.a.a.a	ENSGT00390000013701 #19	ENSGT00950000183189.a.b.a #22	ENSGT00940000154384 #23
Amazon molly	MODERN SPECIES	903															ttc14 (ENSPFOG00000014621) #19	fxr1 (ENSPFOG00000014691) #22	dnajc19 (ENSPFOG00000014794) #23
Sailfin molly	MODERN SPECIES	828												bcar3 (ENSPLAG00000000491)	hps3 (ENSPLAG00000023295)	ENSPLAG00000023278	ttc14 (ENSPLAG00000023263) #19	fxr1 (ENSPLAG00000023193) #22	dnajc19 (ENSPLAG00000023178) #23
Guppy	MODERN SPECIES	456	ENSPREG00000000633	ENSPREG00000000596	comp (ENSPREG00000000551)	tmem38a (ENSPREG00000000545)	smim7 (ENSPREG00000000542)	ENSPREG00000022870	ENSPREG00000022865	aspm (ENSPREG00000022836)	depdc1a (ENSPREG00000022815)	rpe65b (ENSPREG00000022806)	si:ch211-198n5.11 (ENSPREG00000022798)	fnbp1l (ENSPREG00000022786)	bcar3 (ENSPREG00000022769)	hps3 (ENSPREG00000022756)	ttc14 (ENSPREG00000022747) #19	fxr1 (ENSPREG00000022738) #22	dnajc19 (ENSPREG00000022727) #23	sox2 (ENSPREG00000022723) #24	ATP11B (ENSPREG00000022699) #26	mccc1 (ENSPREG00000022680) #28	ENSPREG00000022675	ENSPREG00000022657	ENSPREG00000022643	ENSPREG00000022632	ENSPREG00000022616	stxbp3 (ENSPREG00000022601)	ENSPREG00000022590	ENSPREG00000022583	ENSPREG00000022577	ENSPREG00000022570	henmt1 (ENSPREG00000022562)
Platyfish	MODERN SPECIES	23	EPS15L1 (ENSXMAG00000021226)	DDX10 (ENSXMAG00000016515)	ENSXMAG00000012631	SZT2 (ENSXMAG00000028752)	ENSXMAG00000029261	ENSXMAG00000026966	aspm (ENSXMAG00000000723)	depdc1a (ENSXMAG00000000720)	rpe65b (ENSXMAG00000000719)	si:ch211-198n5.11 (ENSXMAG00000000716)	fnbp1l (ENSXMAG00000000711)	bcar3 (ENSXMAG00000000707)	hps3 (ENSXMAG00000000688)	ENSXMAG00000025704	ttc14 (ENSXMAG00000016060) #19	fxr1 (ENSXMAG00000000666) #22	dnajc19 (ENSXMAG00000000660) #23	sox2 (ENSXMAG00000020128) #24	ATP11B (ENSXMAG00000000614) #26	mccc1 (ENSXMAG00000000611) #28	ENSXMAG00000000609	PIK3CA (ENSXMAG00000000586)	ENSXMAG00000015188	ENSXMAG00000002519	ENSXMAG00000000582	stxbp3 (ENSXMAG00000000568)	ENSXMAG00000000562	ENSXMAG00000000559	henmt1 (ENSXMAG00000000555)	fam102bb (ENSXMAG00000000553)	slc25a24 (ENSXMAG00000000548)
NAME_4	ANCESTRAL SPECIES	62		ENSGT00940000166148	ENSGT00390000018845.f	ENSGT00390000014626	ENSGT00530000063460.B	ENSGT01050000244902.a.a.a.b	ENSGT00560000077332	ENSGT00950000182976.b.a	ENSGT00950000182913.B.f	ENSGT00940000164186.a	ENSGT00950000183047.c.b	ENSGT00940000154130.a.a.b	ENSGT00390000015458	ENSGT00950000182865.b.a.b.b.a.a.a	ENSGT00390000013701 #19	ENSGT00950000183189.a.b.a #22	ENSGT00940000154384 #23	ENSGT00940000160614 #24	ENSGT00940000156162.C #26	ENSGT00940000156941 #28	ENSGT00950000182899.C.a	ENSGT00950000182930.B	ENSGT00940000155531.a.a	ENSGT00730000111202	ENSGT00940000154507.t	ENSGT00460000041630	ENSGT00940000157607	ENSGT00390000004674.i.b	ENSGT00390000004674.j	ENSGT00940000157064.a.b.a	ENSGT00940000157064.a.b.b.a.a
Mummichog	DUPLICATION
Mummichog	MODERN SPECIES	2395														ttc14 (ENSFHEG00000003862) #19	ENSFHEG00000003734 #22	fxr1 (ENSFHEG00000003714) #22	dnajc19 (ENSFHEG00000003702) #23	sox2 (ENSFHEG00000003675) #24	ATP11B (ENSFHEG00000003653) #26	mccc1 (ENSFHEG00000003581) #28	ENSFHEG00000003270	ENSFHEG00000003260	PIK3CA (ENSFHEG00000003251)	ZMAT3 (ENSFHEG00000003221)	ENSFHEG00000003207	ENSFHEG00000003197	stxbp3 (ENSFHEG00000003185)	ENSFHEG00000003177	ENSFHEG00000003168	ENSFHEG00000003159	ENSFHEG00000003137
Mummichog	MODERN SPECIES	2395															ttc14 (ENSFHEG00000003862) #19	ENSFHEG00000003734 #22	fxr1 (ENSFHEG00000003714) #22	dnajc19 (ENSFHEG00000003702) #23	sox2 (ENSFHEG00000003675) #24	ATP11B (ENSFHEG00000003653) #26	mccc1 (ENSFHEG00000003581) #28	ENSFHEG00000003270	ENSFHEG00000003260	PIK3CA (ENSFHEG00000003251)	ZMAT3 (ENSFHEG00000003221)	ENSFHEG00000003207	ENSFHEG00000003197	stxbp3 (ENSFHEG00000003185)	ENSFHEG00000003177	ENSFHEG00000003168	ENSFHEG00000003159
Sheepshead minnow	MODERN SPECIES	681														hps3 (ENSCVAG00000002673)	ttc14 (ENSCVAG00000002680) #19	fxr1 (ENSCVAG00000000711) #22	dnajc19 (ENSCVAG00000002724) #23	sox2 (ENSCVAG00000002728) #24
Oryzias	ANCESTRAL SPECIES	5	ENSGT00940000157937.b.d	ENSGT00940000155195	ENSGT00940000164211	ENSGT00940000155117.f.a	ENSGT00940000154386	ENSGT00940000154967.b.b.b	ENSGT00560000077332	ENSGT00950000182976.b.a	ENSGT00950000182913.B.f	ENSGT00940000164186.a	ENSGT00950000183047.c.b	ENSGT00940000154130.a.a.b	ENSGT00390000015458	ENSGT00950000182865.b.a.b.b.a.a.a	ENSGT00390000013701 #19	ENSGT00950000183189.a.b.a #22	ENSGT00940000154384 #23	ENSGT00940000160614 #24	ENSGT00940000156162.C #26	ENSGT00940000156941 #28	ENSGT01000000216191	ENSGT00940000169190	ENSGT00940000155531.a.a	ENSGT00730000111202	ENSGT00940000154507.t	ENSGT00460000041630	ENSGT00940000157607	ENSGT00390000004674.i.b	ENSGT00390000004674.j	ENSGT00940000157064.a.b.b.a.a	ENSGT00390000004798
Oryzias_b	ANCESTRAL SPECIES	15	ENSGT00940000155117.f.a	ENSGT00940000154967.b.b.a	ENSGT00940000174597	ENSGT00940000154386	ENSGT00940000154967.b.b.b	ENSGT01050000245029.a	ENSGT00560000077332	ENSGT00950000182976.b.a	ENSGT00950000182913.B.f	ENSGT00940000164186.a	ENSGT00950000183047.c.b	ENSGT00940000154130.a.a.b	ENSGT00390000015458	ENSGT00950000182865.b.a.b.b.a.a.a	ENSGT00390000013701 #19	ENSGT00950000183189.a.b.a #22	ENSGT00940000154384 #23	ENSGT00940000160614 #24	ENSGT00940000156162.C #26	ENSGT00940000156941 #28	ENSGT01000000216191	ENSGT00940000169190	ENSGT00940000155531.a.a	ENSGT00730000111202	ENSGT00940000154507.t	ENSGT00460000041630	ENSGT00940000157607	ENSGT00390000004674.i.b	ENSGT00390000004674.j	ENSGT00940000157064.a.b.b.a.a	ENSGT00390000004798
Javanese ricefish	MODERN SPECIES	18	ENSOJAG00000006195	ENSOJAG00000006135	ENSOJAG00000006126	ENSOJAG00000006115	ENSOJAG00000006049	ENSOJAG00000006019	aspm (ENSOJAG00000005674)	depdc1a (ENSOJAG00000005643)	rpe65b (ENSOJAG00000004462)	si:ch211-198n5.11 (ENSOJAG00000004102)	fnbp1l (ENSOJAG00000003974)	bcar3 (ENSOJAG00000003879)	hps3 (ENSOJAG00000003815)	ENSOJAG00000003787	ttc14 (ENSOJAG00000022381) #19	fxr1 (ENSOJAG00000022030) #22	dnajc19 (ENSOJAG00000021937) #23	ENSOJAG00000021914	ATP11B (ENSOJAG00000021737) #26	mccc1 (ENSOJAG00000021188) #28	ENSOJAG00000021150	kng1 (ENSOJAG00000021146)	PIK3CA (ENSOJAG00000021116)	ENSOJAG00000021109	ENSOJAG00000021105	ENSOJAG00000021089	stxbp3 (ENSOJAG00000020548)	FNDC7 (ENSOJAG00000020494)	ENSOJAG00000020464	ENSOJAG00000020449	henmt1 (ENSOJAG00000020437)
Indian medaka	MODERN SPECIES	13	ENSOMEG00000012759	ENSOMEG00000012738	ENSOMEG00000012689	ENSOMEG00000012650	ENSOMEG00000012637	aspm (ENSOMEG00000012594)	depdc1a (ENSOMEG00000012533)	rpe65b (ENSOMEG00000012468)	si:ch211-198n5.11 (ENSOMEG00000012358)	fnbp1l (ENSOMEG00000012284)	bcar3 (ENSOMEG00000012147)	gnb5a (ENSOMEG00000011983) ##11	hps3 (ENSOMEG00000011957)	ENSOMEG00000011872	ttc14 (ENSOMEG00000011795) #19	fxr1 (ENSOMEG00000011753) #22	dnajc19 (ENSOMEG00000011655) #23	sox2 (ENSOMEG00000011636) #24	ATP11B (ENSOMEG00000011605) #26	mccc1 (ENSOMEG00000011470) #28	ENSOMEG00000011439	kng1 (ENSOMEG00000011412)	PIK3CA (ENSOMEG00000011383)	ENSOMEG00000011303	ENSOMEG00000011259	ENSOMEG00000011225	ENSOMEG00000011198	stxbp3 (ENSOMEG00000011180)	FNDC7 (ENSOMEG00000011142)	ENSOMEG00000011097	ENSOMEG00000011070
Oryzias_a	ANCESTRAL SPECIES	14	ENSGT00940000158520.e.b	ENSGT00940000157937.b.d	ENSGT00940000155195	ENSGT00940000164211	ENSGT00940000155117.f.a	ENSGT00560000077332	ENSGT00950000182976.b.a	ENSGT00950000182913.B.f	ENSGT00940000164186.a	ENSGT00950000183047.c.b	ENSGT00940000154130.a.a.b	ENSGT00390000015458	ENSGT00950000182865.b.a.b.b.a.a.a	ENSGT01100000264681	ENSGT00390000013701.w #19	ENSGT00950000183189.a.b.a #22	ENSGT00940000154384 #23	ENSGT00940000160614 #24	ENSGT00940000156162.C #26	ENSGT00940000156941 #28	ENSGT01000000216191	ENSGT00940000169190	ENSGT00940000155531.a.a	ENSGT00730000111202	ENSGT00940000154507.t	ENSGT00460000041630	ENSGT00940000157607	ENSGT00390000004674.i.b	ENSGT00940000157064.a.b.b.a.a	ENSGT00390000004798	ENSGT00940000156132.h
Japanese Medaka HdrR	MODERN SPECIES	18	uchl5 (ENSORLG00000012257)	glrx2 (ENSORLG00000012223)	ENSORLG00000025926	b3galt2 (ENSORLG00000025428)	ENSORLG00000027370	aspm (ENSORLG00000012201)	depdc1a (ENSORLG00000012180)	rpe65b (ENSORLG00000012125)	si:ch211-198n5.11 (ENSORLG00000012062)	fnbp1l (ENSORLG00000012037)	bcar3 (ENSORLG00000011935)	hps3 (ENSORLG00000011881)	ENSORLG00000011842	ENSORLG00000029868	ttc14 (ENSORLG00000011825) #19	fxr1 (ENSORLG00000011787) #22	dnajc19 (ENSORLG00000026035) #23	ENSORLG00000023151	sox2 (ENSORLG00000011685) #24	ATP11B (ENSORLG00000025942) #26	mccc1 (ENSORLG00000011678) #28	ENSORLG00000025358	kng1 (ENSORLG00000011656)	PIK3CA (ENSORLG00000011644)	ENSORLG00000011575	ENSORLG00000011566	ENSORLG00000011540	stxbp3 (ENSORLG00000011502)	ENSORLG00000011405	ENSORLG00000029557	ENSORLG00000028575
Chinese medaka	MODERN SPECIES	971									depdc1a (ENSOSIG00000012743)	rpe65c (ENSOSIG00000012754)	fnbp1l (ENSOSIG00000012760)	bcar3 (ENSOSIG00000012792)	hps3 (ENSOSIG00000012897)	ENSOSIG00000013092	ENSOSIG00000013093	fxr1 (ENSOSIG00000013100) #22	dnajc19 (ENSOSIG00000015190) #23	ENSOSIG00000015197	ATP11B (ENSOSIG00000015204) #26
Ovalentaria_B	ANCESTRAL SPECIES	8	ENSGT00940000164211	ENSGT00940000155117.f.a	ENSGT00940000154386	ENSGT00940000154967.b.b.b	ENSGT00940000154967.b.b.a	ENSGT00940000174597	ENSGT00560000077332	ENSGT00950000182976.b.a	ENSGT00950000182913.B.f	ENSGT00940000164186.a	ENSGT00950000183047.c.b	ENSGT00940000154130.a.a.b	ENSGT00390000015458	ENSGT00950000182865.b.a.b.b.a.a.a	ENSGT00390000013701 #19	ENSGT00950000183189.a.b.a #22	ENSGT00940000154384 #23	ENSGT00940000160614 #24	ENSGT00940000156162.C #26	ENSGT00940000156941 #28	ENSGT00950000182899.C.a	ENSGT00950000182930.B	ENSGT00940000155531.a.a	ENSGT00730000111202	ENSGT00940000154507.t	ENSGT00460000041630	ENSGT00940000157607	ENSGT00390000004674.i.b	ENSGT00980000198596.B	ENSGT00940000157064.a.b.b.a.a	ENSGT01050000244823.d.b.b.b
Pomacentridae	ANCESTRAL SPECIES	16	ENSGT00940000157316.f	ENSGT00940000158520.e.b	ENSGT00940000157937.b.d	ENSGT00940000155195	ENSGT00940000164211	ENSGT00940000155117.f.a	ENSGT00560000077332	ENSGT00950000182976.b.a	ENSGT00950000182913.B.f	ENSGT00940000164186.a	ENSGT00950000183047.c.b	ENSGT00940000154130.a.a.b	ENSGT00390000015458	ENSGT00950000182865.b.a.b.b.a.a.a	ENSGT00390000013701 #19	ENSGT00950000183189.a.b.a #22	ENSGT00940000154384 #23	ENSGT00940000160614 #24	ENSGT00940000156162.C #26	ENSGT00940000156941 #28	ENSGT00950000182899.C.a	ENSGT00950000182930.B	ENSGT00940000155531.a.a	ENSGT00730000111202	ENSGT00940000154507.t	ENSGT00460000041630	ENSGT00940000157607	ENSGT00390000004674.i.b	ENSGT00980000198596.B	ENSGT00940000157064.a.b.b.a.a	ENSGT01050000244823.d.b.b.b
Pomacentridae_A	ANCESTRAL SPECIES		ENSGT00940000157316.f	ENSGT00940000158520.e.b	ENSGT00940000157937.b.d	ENSGT00940000155195	ENSGT00940000164211	ENSGT00940000155117.f.a	ENSGT00560000077332	ENSGT00950000182976.b.a	ENSGT00950000182913.B.f	ENSGT00940000164186.a	ENSGT00950000183047.c.b	ENSGT00940000154130.a.a.b	ENSGT00390000015458	ENSGT00950000182865.b.a.b.b.a.a.a	ENSGT00390000013701 #19	ENSGT00950000183189.a.b.a #22	ENSGT00940000154384 #23	ENSGT00940000160614 #24	ENSGT00940000156162.C #26	ENSGT00940000156941 #28	ENSGT00950000182899.C.a	ENSGT00950000182930.B	ENSGT00940000155531.a.a	ENSGT00730000111202	ENSGT00940000154507.t	ENSGT00460000041630	ENSGT00940000157607	ENSGT00390000004674.i.b	ENSGT00940000179565	ENSGT00980000198596.B	ENSGT00940000157064.a.b.b.a.a
Amphiprion	ANCESTRAL SPECIES	2										ENSGT00940000164186.a	ENSGT00950000183047.c.b	ENSGT00940000154130.a.a.b	ENSGT00390000015458	ENSGT00950000182865.b.a.b.b.a.a.a	ENSGT00390000013701 #19	ENSGT00950000183189.a.b.a #22	ENSGT00940000154384 #23	ENSGT00940000160614 #24	ENSGT00940000156162.C #26	ENSGT00940000156941 #28	ENSGT00950000182899.C.a	ENSGT00940000169190	ENSGT00940000155531.a.a	ENSGT00730000111202	ENSGT00940000154507.t	ENSGT00460000041630	ENSGT00940000157607	ENSGT00390000004674.i.b	ENSGT00940000179565	ENSGT00980000198596.B	ENSGT00940000157064.a.b.b.a.a
Orange clownfish	MODERN SPECIES	11	ENSAPEG00000016090	depdc1a (ENSAPEG00000015954)	rpe65c (ENSAPEG00000015903)	ENSAPEG00000015890	ENSAPEG00000015867	ENSAPEG00000015825	ENSAPEG00000015712	ENSAPEG00000015659	ENSAPEG00000015646	si:ch211-198n5.11 (ENSAPEG00000015606)	fnbp1l (ENSAPEG00000015551)	bcar3 (ENSAPEG00000015457)	ENSAPEG00000015442	hps3 (ENSAPEG00000015313)	ttc14 (ENSAPEG00000015072) #19	fxr1 (ENSAPEG00000014981) #22	dnajc19 (ENSAPEG00000014945) #23	sox2 (ENSAPEG00000014838) #24	ATP11B (ENSAPEG00000014737) #26	mccc1 (ENSAPEG00000014712) #28	ENSAPEG00000014683	kng1 (ENSAPEG00000014666)	PIK3CA (ENSAPEG00000014601)	ENSAPEG00000014580	ZMAT3 (ENSAPEG00000014553)	ENSAPEG00000014504	ENSAPEG00000014456	stxbp3 (ENSAPEG00000014381)	ENSAPEG00000014335	ENSAPEG00000014318	ENSAPEG00000014292
Clown anemonefish	MODERN SPECIES	1121										LPAR2 (ENSAOCG00000022406)	ENSAOCG00000022393	akap8l (ENSAOCG00000022319)	hps3 (ENSAOCG00000022280)	ENSAOCG00000022253	ttc14 (ENSAOCG00000022230) #19	fxr1 (ENSAOCG00000022178) #22	dnajc19 (ENSAOCG00000022106) #23
Spiny chromis	MODERN SPECIES	309											si:ch211-198n5.11 (ENSAPOG00000017317)	fnbp1l (ENSAPOG00000017182)	bcar3 (ENSAPOG00000017119)	hps3 (ENSAPOG00000017102)	ttc14 (ENSAPOG00000017067) #19	fxr1 (ENSAPOG00000017058) #22	dnajc19 (ENSAPOG00000016978) #23	ENSAPOG00000016952	CRACR2A (ENSAPOG00000016936)	PRMT8 (ENSAPOG00000016867)	TSPAN9 (ENSAPOG00000016806)	tspan33b (ENSAPOG00000016771)	ttc38 (ENSAPOG00000016759)	mical3a (ENSAPOG00000016720)
Bicolor damselfish	MODERN SPECIES	589												fnbp1l (ENSSPAG00000010845)	bcar3 (ENSSPAG00000010816)	hps3 (ENSSPAG00000010730)	ttc14 (ENSSPAG00000010662) #19	fxr1 (ENSSPAG00000010538) #22	dnajc19 (ENSSPAG00000010504) #23	sox2 (ENSSPAG00000010494) #24
Cichlidae	ANCESTRAL SPECIES	42	ENSGT00940000155195	ENSGT00940000164211	ENSGT00940000155117.f.a	ENSGT00940000154967.b.b.a	ENSGT00940000154386	ENSGT00940000154967.b.b.b	ENSGT00940000174597	ENSGT00560000077332	ENSGT00950000182976.b.a	ENSGT00950000182913.B.f	ENSGT00940000164186.a	ENSGT00950000183047.c.b	ENSGT00940000154130.a.a.b	ENSGT00390000015458	ENSGT00390000013701 #19	ENSGT00950000183189.a.b.a #22	ENSGT00940000154384 #23	ENSGT00940000160614 #24	ENSGT00940000164897.a.b.b	ENSGT00940000156162.C #26	ENSGT00940000156941 #28	ENSGT01000000216191	ENSGT00460000041630	ENSGT00940000154507.t	ENSGT00730000111202	ENSGT00940000155531.a.a	ENSGT00950000182930.B
Pseudocrenilabrinae	ANCESTRAL SPECIES	23	ENSGT00940000164211	ENSGT00940000155117.f.a	ENSGT00940000174597	ENSGT00940000154967.a.b.a.b.`b.b	ENSGT00940000154386	ENSGT00940000154967.b.b.b	ENSGT00940000154967.b.b.a	ENSGT00560000077332	ENSGT00950000182976.b.a	ENSGT00950000182913.B.f	ENSGT00940000164186.a	ENSGT00950000183047.c.b	ENSGT00940000154130.a.a.b	ENSGT00390000015458	ENSGT00390000013701 #19	ENSGT00950000183189.a.b.a #22	ENSGT00940000154384 #23	ENSGT00940000160614 #24	ENSGT00940000164897.a.b.b	ENSGT00940000156162.C #26	ENSGT00940000156941 #28	ENSGT00950000182899.C.a	ENSGT00460000041630	ENSGT00940000154507.t.d	ENSGT00730000111202	ENSGT00940000155531.a.a	ENSGT00950000182930.B	ENSGT00940000154507.t.c	ENSGT00940000157607	ENSGT00390000004674.i.b	ENSGT00980000198596.B
Nile tilapia	MODERN SPECIES	8	f2r (ENSONIG00000016111)	depdc1a (ENSONIG00000003784)	rpe65b (ENSONIG00000003773)	si:ch211-198n5.11 (ENSONIG00000003770)	fnbp1l (ENSONIG00000003764)	bcar3 (ENSONIG00000003760)	hps3 (ENSONIG00000003752)	ENSONIG00000027731	b3gat1a (ENSONIG00000003750)	ENSONIG00000035489	ENSONIG00000041410	ENSONIG00000029705	ENSONIG00000029296	ttc14 (ENSONIG00000003747) #19	ENSONIG00000032390	fxr1 (ENSONIG00000003740) #22	dnajc19 (ENSONIG00000027409) #23	sox2 (ENSONIG00000039405) #24	ENSONIG00000021316	ATP11B (ENSONIG00000003733) #26	ENSONIG00000028245	ENSONIG00000015024	mccc1 (ENSONIG00000008395) #28	ENSONIG00000037606	ENSONIG00000008390	ENSONIG00000027371	ENSONIG00000008388	PIK3CA (ENSONIG00000008379)	ENSONIG00000008378	ENSONIG00000041522	stxbp3 (ENSONIG00000008368)
Pseudocrenilabrinae_A	ANCESTRAL SPECIES	10	ENSGT00940000155117.f.a	ENSGT00940000154967.b.b.a.l	ENSGT00940000154386	ENSGT00940000154967.b.b.b	ENSGT00940000154967.b.b.a.k	ENSGT00940000174597	ENSGT00950000182866.D.d.a.c.b.a.a.a.a.a.a.b	ENSGT00560000077332	ENSGT00950000182976.b.a	ENSGT00950000182913.B.f	ENSGT00940000164186.a	ENSGT00950000183047.c.b	ENSGT00940000154130.a.a.b	ENSGT00390000015458	ENSGT00390000013701 #19	ENSGT00950000183189.a.b.a #22	ENSGT00940000154384 #23	ENSGT00940000160614 #24	ENSGT00940000164897.a.b.b	ENSGT00940000156162.C #26	ENSGT00940000156941 #28	ENSGT00950000182899.C.a	ENSGT00460000041630	ENSGT00940000154507.t.d	ENSGT00730000111202	ENSGT00940000155531.a.a	ENSGT00950000182930.B	ENSGT00940000154507.t.c	ENSGT00940000157607	ENSGT00390000004674.i.b	ENSGT00980000198596.B
Haplochromini	ANCESTRAL SPECIES	9	ENSGT00940000155117.f.a	ENSGT00940000154967.b.b.a.k	ENSGT00940000154386	ENSGT00940000154967.b.b.b	ENSGT00940000154967.b.b.a.l	ENSGT00940000174597	ENSGT00560000077332	ENSGT00950000182976.b.a	ENSGT00950000182913.B.f	ENSGT00940000164186.a	ENSGT00950000183047.c.b	ENSGT00940000154130.a.a.b	ENSGT00390000015458.i	ENSGT00950000182865.b.a.b.b.a.a.a	ENSGT00390000013701 #19	ENSGT00950000183189.a.b.a #22	ENSGT00940000154384 #23	ENSGT00940000160614 #24	ENSGT00940000164897.a.b.b	ENSGT00940000156162.C #26	ENSGT00940000156941 #28	ENSGT00950000182899.C.a	ENSGT00460000041630	ENSGT00940000154507.t.d	ENSGT00730000111202	ENSGT00940000155531.a.a	ENSGT00950000182930.B	ENSGT00940000154507.t.c	ENSGT00940000157607	ENSGT00390000004674.i.b	ENSGT00980000198596.B
Haplochromini_A	ANCESTRAL SPECIES	9	ENSGT00940000155117.f.a	ENSGT00940000154967.b.b.a.k	ENSGT00940000154386	ENSGT00940000154967.b.b.b	ENSGT00940000154967.b.b.a.l	ENSGT00940000174597	ENSGT00560000077332	ENSGT00950000182976.b.a	ENSGT00950000182913.B.f	ENSGT00940000164186.a	ENSGT00950000183047.c.b	ENSGT00940000154130.a.a.b	ENSGT00390000015458.i	ENSGT00950000182865.b.a.b.b.a.a.a	ENSGT00390000013701 #19	ENSGT00950000183189.a.b.a #22	ENSGT00940000154384 #23	ENSGT00940000160614 #24	ENSGT00940000164897.a.b.b	ENSGT00940000156162.C #26	ENSGT00940000156941 #28	ENSGT00950000182899.C.a	ENSGT00460000041630	ENSGT00940000154507.t.d	ENSGT00730000111202	ENSGT00940000155531.a.a	ENSGT00950000182930.B	ENSGT00940000154507.t.c	ENSGT00940000157607	ENSGT00390000004674.i.b	ENSGT00980000198596.B
Haplochromini_B	ANCESTRAL SPECIES	32	ENSGT00940000157937.b.d	ENSGT00940000155195	ENSGT00940000164211	ENSGT00940000155117.f.a	ENSGT00940000154967.b.b.a.k.b	ENSGT00940000174597	ENSGT00560000077332	ENSGT00950000182976.b.a	ENSGT00950000182913.B.f	ENSGT00940000164186.a	ENSGT00950000183047.c.b	ENSGT00940000154130.a.a.b	ENSGT00390000015458.i	ENSGT00950000182865.b.a.b.b.a.a.a	ENSGT00390000013701 #19	ENSGT00950000183189.a.b.a #22	ENSGT00940000154384 #23	ENSGT00940000160614 #24	ENSGT00530000064692.B.b.a.d.a.a.a.b	ENSGT00940000164897.a.b.b	ENSGT00940000156162.C #26	ENSGT00940000156941 #28	ENSGT00950000182899.C.a	ENSGT00460000041630	ENSGT00940000154507.t.d	ENSGT00730000111202	ENSGT00940000155531.a.a	ENSGT00950000182930.B	ENSGT00940000154507.t.c	ENSGT00940000157607	ENSGT00390000004674.i.b
Eastern happy	MODERN SPECIES	8	ENSACLG00000025338	ENSACLG00000025359	ENSACLG00000025380	ENSACLG00000025388	ENSACLG00000025399	aspm (ENSACLG00000025411)	depdc1a (ENSACLG00000025455)	rpe65b (ENSACLG00000025478)	si:ch211-198n5.11 (ENSACLG00000025517)	fnbp1l (ENSACLG00000025531)	bcar3 (ENSACLG00000025641)	hps3 (ENSACLG00000025702)	ENSACLG00000025760	ENSACLG00000025775	ttc14 (ENSACLG00000025782) #19	fxr1 (ENSACLG00000025812) #22	dnajc19 (ENSACLG00000025865) #23	sox2 (ENSACLG00000025897) #24	ENSACLG00000025903	ENSACLG00000025904	ENSACLG00000025909	ENSACLG00000025947	ENSACLG00000025953	ATP11B (ENSACLG00000025964) #26	mccc1 (ENSACLG00000026110) #28	ENSACLG00000026175	ENSACLG00000026193	ENSACLG00000026226	ENSACLG00000026272	PIK3CA (ENSACLG00000026297)	ENSACLG00000026340
Zebra mbuna	MODERN SPECIES	1099	ENSMZEG00005015868	ENSMZEG00005015861	ENSMZEG00005015847	ENSMZEG00005015831	ENSMZEG00005015828	brinp3a.2 (ENSMZEG00005015813)	ENSMZEG00005015791	ENSMZEG00005015783	RGS13 (ENSMZEG00005015776)	ENSMZEG00005015771	uchl5 (ENSMZEG00005015751)	glrx2 (ENSMZEG00005015746)	b3galt2 (ENSMZEG00005015744)	hps3 (ENSMZEG00005015725)	ttc14 (ENSMZEG00005015709) #19	fxr1 (ENSMZEG00005015679) #22	dnajc19 (ENSMZEG00005015660) #23	sox2 (ENSMZEG00005015644) #24	ENSMZEG00005015637	ENSMZEG00005015589	ATP11B (ENSMZEG00005015554) #26	mccc1 (ENSMZEG00005015532) #28	ENSMZEG00005015524	ENSMZEG00005015477	ENSMZEG00005015451	ENSMZEG00005015427	PIK3CA (ENSMZEG00005015395)	lrp8 (ENSMZEG00005015380)	slc26a5 (ENSMZEG00005015362)	ENSMZEG00005015351	tmed9 (ENSMZEG00005015327)
P. nyererei	MODERN SPECIES	367															ttc14 (ENSPNYG00000014013) #19	fxr1 (ENSPNYG00000014047) #22	dnajc19 (ENSPNYG00000014103) #23	sox2 (ENSPNYG00000014128) #24	ENSPNYG00000014137	ATP11B (ENSPNYG00000014182) #26	ENSPNYG00000014255 #28	ENSPNYG00000014271	ENSPNYG00000014294	ENSPNYG00000014339	ZMAT3 (ENSPNYG00000014350)	PIK3CA (ENSPNYG00000014370)	ENSPNYG00000014435	ENSPNYG00000014452	stxbp3 (ENSPNYG00000014469)	FNDC7 (ENSPNYG00000014503)	ENSPNYG00000014551
Burton s mouthbrooder	MODERN SPECIES	329															ttc14 (ENSHBUG00000004981) #19	fxr1 (ENSHBUG00000004901) #22	dnajc19 (ENSHBUG00000004787) #23	sox2 (ENSHBUG00000004735) #24	ENSHBUG00000000117	ATP11B (ENSHBUG00000004693) #26	mccc1 (ENSHBUG00000000956) #28	ENSHBUG00000004546	ENSHBUG00000004522	ENSHBUG00000004414	ENSHBUG00000004401	PIK3CA (ENSHBUG00000004357)	ENSHBUG00000004293	ENSHBUG00000004261	stxbp3 (ENSHBUG00000004244)	FNDC7 (ENSHBUG00000004176)	ENSHBUG00000004146
Lyretail cichlid	MODERN SPECIES	343	ENSNBRG00000021710	b3galt2 (ENSNBRG00000021706)	ENSNBRG00000021698	ENSNBRG00000021687	ENSNBRG00000021666	ENSNBRG00000021649	NXPE3 (ENSNBRG00000021635)	ENSNBRG00000021574	depdc1a (ENSNBRG00000021479)	rpe65b (ENSNBRG00000021436)	si:ch211-198n5.11 (ENSNBRG00000021401)	fnbp1l (ENSNBRG00000021354)	bcar3 (ENSNBRG00000021258)	hps3 (ENSNBRG00000021182)	ttc14 (ENSNBRG00000021095) #19	fxr1 (ENSNBRG00000021072) #22	dnajc19 (ENSNBRG00000021053) #23	sox2 (ENSNBRG00000021046) #24	ENSNBRG00000021036	ENSNBRG00000021026	ATP11B (ENSNBRG00000020967) #26	ENSNBRG00000020946	ENSNBRG00000020924	ENSNBRG00000020902	ZMAT3 (ENSNBRG00000020886)	ENSNBRG00000020876	PIK3CA (ENSNBRG00000020832)	ENSNBRG00000020823	stxbp3 (ENSNBRG00000020763)	FNDC7 (ENSNBRG00000020687)	ENSNBRG00000020673
Midas cichlid	MODERN SPECIES	487					ENSACIG00000023496	ENSACIG00000023493	aspm (ENSACIG00000023479)	depdc1a (ENSACIG00000023461)	rpe65c (ENSACIG00000023446)	si:ch211-198n5.11 (ENSACIG00000023426)	fnbp1l (ENSACIG00000023410)	bcar3 (ENSACIG00000023397)	cd248a (ENSACIG00000023389)	hps3 (ENSACIG00000023368)	ttc14 (ENSACIG00000023360) #19	fxr1 (ENSACIG00000023354) #22	dnajc19 (ENSACIG00000023350) #23	sox2 (ENSACIG00000023348) #24	ENSACIG00000023342	ATP11B (ENSACIG00000023329) #26	mccc1 (ENSACIG00000023146) #28	ENSACIG00000023097	ENSACIG00000023068	PIK3CA (ENSACIG00000023052)	ZMAT3 (ENSACIG00000023037)	ENSACIG00000023030	stxbp3 (ENSACIG00000022914)	ENSACIG00000022889
Protacanthopterygii	DUPLICATION
Protacanthopterygii	ANCESTRAL SPECIES	104													ENSGT00950000182865.b.a.b.b.a.a.a	ENSGT00390000013701 #19	ENSGT00950000183189.a.b.a.l #22	ENSGT00950000183189.a.b.a.k #22	ENSGT00940000154384 #23	ENSGT00940000160614 #24	ENSGT00940000156968.o	ENSGT00960000186843	ENSGT00940000156968.p	ENSGT00940000156262	ENSGT00950000182976.b.a	ENSGT00950000182913.B.f	ENSGT00940000164186.a	ENSGT00950000183047.c.b	ENSGT00940000154130.a.a.b	ENSGT00940000165232	ENSGT00940000157546	ENSGT00510000047658	ENSGT00510000048142
Salmoninae	ANCESTRAL SPECIES	115														ENSGT00940000160141.e.b.a	ENSGT00390000013701.t #19	ENSGT00950000183189.a.b.a.k #22	ENSGT00940000154384 #23	ENSGT00940000160614.i #24	ENSGT00940000156968.o	ENSGT00960000186843	ENSGT00940000156262.y	ENSGT00950000182976.b.a.d	ENSGT00950000182913.B.f.f	ENSGT00940000164186.a	ENSGT00950000183047.c.b.h	ENSGT00940000154130.a.a.b.m	ENSGT00940000165232.h	ENSGT00940000157546	ENSGT00510000047658.c	ENSGT00510000048142.v	ENSGT00530000063821.a
Salmoninae_a	ANCESTRAL SPECIES	22	ENSGT00940000154973.a.b.a	ENSGT00390000013989.a.n	ENSGT00940000158159.d	ENSGT00390000016356	ENSGT00390000017679	ENSGT00950000182988.a.a.b.i	ENSGT00390000003020.d	ENSGT00530000063816.d.m	ENSGT01050000244955.b.c.c	ENSGT01050000244897.a.a.b.b.a	ENSGT00460000041630	ENSGT00940000155297.hb.b.b	ENSGT00990000204094.c.b	ENSGT00940000160141.e.b.a	ENSGT00390000013701.t #19	ENSGT00950000183189.a.b.a.k #22	ENSGT00940000154384 #23	ENSGT00940000156968.o	ENSGT00960000186843	ENSGT00940000156262.y	ENSGT00950000182976.b.a.d	ENSGT00950000182913.B.f.f	ENSGT00940000164186.a	ENSGT00950000183047.c.b.h	ENSGT00940000154130.a.a.b.m	ENSGT00940000165232.h	ENSGT00940000157546	ENSGT00510000047658.c	ENSGT00510000048142.v	ENSGT00530000063821.a	ENSGT00390000001724.l.a.b
Salmo	ANCESTRAL SPECIES	14	ENSGT00940000154973.a.b.a	ENSGT00390000013989.a.n	ENSGT00940000158159.d	ENSGT00390000016356	ENSGT00390000017679	ENSGT00950000182988.a.a.b.i	ENSGT00390000003020.d	ENSGT00530000063816.d.m	ENSGT01050000244955.b.c.c	ENSGT01050000244897.a.a.b.b.a	ENSGT00460000041630	ENSGT00940000155297.hb.b.b	ENSGT00990000204094.c.b	ENSGT00940000160141.e.b.a	ENSGT00390000013701.t #19	ENSGT00950000183189.a.b.a.k #22	ENSGT00940000154384 #23	ENSGT00940000156968.o	ENSGT00960000186843	ENSGT00940000156262.y	ENSGT00950000182976.b.a.d	ENSGT00950000182913.B.f.f	ENSGT00940000164186.a	ENSGT00950000183047.c.b.h	ENSGT00940000154130.a.a.b.m	ENSGT00940000165232.h	ENSGT00940000157546	ENSGT00510000047658.c	ENSGT00510000048142.v	ENSGT00530000063821.a	ENSGT00390000001724.l.b.b
Atlantic salmon	MODERN SPECIES	1	ing5a (ENSSSAG00000093309)	cep19 (ENSSSAG00000118536)	pigx (ENSSSAG00000041234)	pak2b (ENSSSAG00000041277)	ENSSSAG00000099543	rpp21 (ENSSSAG00000043838)	ENSSSAG00000102904	gpc5b (ENSSSAG00000103799)	gpc1a (ENSSSAG00000043895)	ankmy1 (ENSSSAG00000044230)	ENSSSAG00000044376	ENSSSAG00000114736	ENSSSAG00000051282	ENSSSAG00000051296 #19	ENSSSAG00000105616	ENSSSAG00000051511 #22	ENSSSAG00000120735	ENSSSAG00000082201	lrrc2 (ENSSSAG00000060461)	LRRC7 (ENSSSAG00000060780)	DEPDC1 (ENSSSAG00000061391)	ENSSSAG00000062538	RPE65 (ENSSSAG00000112197)	fnbp1l (ENSSSAG00000062755)	bcar3 (ENSSSAG00000063319)	zgc:171480 (ENSSSAG00000063345)	slc5a9 (ENSSSAG00000063359)	gsh0 (ENSSSAG00000063809)	ENSSSAG00000087728	ENSSSAG00000063813	spata6 (ENSSSAG00000106644)
River trout	MODERN SPECIES	14	plekhb2 (ENSSTUG00000045574)	ing5a (ENSSTUG00000045587)	cep19 (ENSSTUG00000035252)	pigx (ENSSTUG00000035258)	pak2b (ENSSTUG00000035291)	ENSSTUG00000035783	rpp21 (ENSSTUG00000035790)	aqp12 (ENSSTUG00000035798)	gpc5b (ENSSTUG00000035807)	gpc1a (ENSSTUG00000035823)	ENSSTUG00000035958	EPHB1 (ENSSTUG00000036005)	ENSSTUG00000037051	LRRC24 (ENSSTUG00000037062)	ttc14 (ENSSTUG00000037083) #19	fxr1 (ENSSTUG00000037446) #22	dnajc19 (ENSSTUG00000039802) #23	ENSSTUG00000039840	lrrc40 (ENSSTUG00000039866)	ENSSTUG00000039939	ENSSTUG00000039945	LRRC7 (ENSSTUG00000040027)	depdc1a (ENSSTUG00000040140)	RPE65 (ENSSTUG00000040173)	si:ch211-198n5.11 (ENSSTUG00000040753)	fnbp1l (ENSSTUG00000040947)	bcar3 (ENSSTUG00000041017)	zgc:171480 (ENSSTUG00000041056)	slc5a9 (ENSSTUG00000041092)	gclm (ENSSTUG00000041215)	ENSSTUG00000041234
Oncorhynchus	DUPLICATION
Oncorhynchus	ANCESTRAL SPECIES	8	ENSGT00390000013989.a.n	ENSGT00940000158159.d	ENSGT00390000016356	ENSGT00390000017679	ENSGT00950000182988.a.a.b.i	ENSGT00390000003020.d	ENSGT00530000063816.d.m	ENSGT01050000244955.b.c.c	ENSGT01050000244897.a.a.b.b.a	ENSGT00460000041630	ENSGT00940000155297.hb.b.b	ENSGT00990000204094.c.b	ENSGT00940000160141.e.b.a	ENSGT00950000183189.a.b.a.k.b.b #22	ENSGT00940000154384 #23	ENSGT00950000183189.a.b.a.k.a #22	ENSGT00940000156968.o	ENSGT00940000156262.y	ENSGT00950000182976.b.a.d	ENSGT00950000182913.B.f.f	ENSGT00940000164186.a	ENSGT00950000183047.c.b.h	ENSGT00940000154130.a.a.b.m	ENSGT00940000157546	ENSGT00510000047658.c	ENSGT00510000048142.v	ENSGT00530000063821.a	ENSGT00390000001724.l.a.b	ENSGT00940000155042.a.a.f	ENSGT00940000157399.a	ENSGT00940000161649.f
Oncorhynchus_a	ANCESTRAL SPECIES	14	ENSGT00940000158159.d	ENSGT00390000016356	ENSGT00390000017679	ENSGT00950000182988.a.a.b.i	ENSGT00390000003020.d	ENSGT00530000063816.d.m	ENSGT01050000244955.b.c.c	ENSGT01050000244897.a.a.b.b.a	ENSGT00460000041630	ENSGT00940000155297.hb.b.b	ENSGT00990000204094.c.b	ENSGT00940000160141.e.b.a	ENSGT00940000180153	ENSGT00950000183189.a.b.a.k.b.a #22	ENSGT00940000154384 #23	ENSGT00950000183189.a.b.a.k.a #22	ENSGT00940000156968.o	ENSGT00940000156262.y	ENSGT00950000182976.b.a.d	ENSGT00950000182913.B.f.f	ENSGT00940000164186.a	ENSGT00950000183047.c.b.h	ENSGT00940000154130.a.a.b.m	ENSGT00940000157546	ENSGT00510000047658.c	ENSGT00510000048142.v	ENSGT00530000063821.a	ENSGT00390000001724.l.a.b	ENSGT00940000155042.a.a.f	ENSGT00940000157399.a	ENSGT00940000161649.f
Chinook salmon	DUPLICATION
Chinook salmon	MODERN SPECIES	29	ENSOTSG00005031319	ssbp4 (ENSOTSG00005031318)	fkbp8 (ENSOTSG00005031304)	ell (ENSOTSG00005031283)	DOT1L (ENSOTSG00005031276)	amh (ENSOTSG00005031275)	oaz1a (ENSOTSG00005031272)	org (ENSOTSG00005031270)	lingo3a (ENSOTSG00005031269)	nfil3-4 (ENSOTSG00005031267)	ENSOTSG00005031265	lrrc40 (ENSOTSG00005031078)	sox2 (ENSOTSG00005031077) #24	fxr1 (ENSOTSG00005031076) #22	dnajc19 (ENSOTSG00005031074) #23	fxr1 (ENSOTSG00005031073) #22	ttc14 (ENSOTSG00005031072) #19	LRRC24 (ENSOTSG00005031071)	ENSOTSG00005031070	ENSOTSG00005031069	ENSOTSG00005031068	gpc1a (ENSOTSG00005031065)	ENSOTSG00005031062	gpc5b (ENSOTSG00005031061)	aqp12 (ENSOTSG00005031060)	rpp21 (ENSOTSG00005031059)	ENSOTSG00005030643	ENSOTSG00005030636	ankrd29 (ENSOTSG00005030632)	ENSOTSG00005030525	plekhb2 (ENSOTSG00005030518)
Chinook salmon	MODERN SPECIES	29	RPE65 (ENSOTSG00005031467)	depdc1a (ENSOTSG00005031320)	ENSOTSG00005031319	ssbp4 (ENSOTSG00005031318)	fkbp8 (ENSOTSG00005031304)	ell (ENSOTSG00005031283)	DOT1L (ENSOTSG00005031276)	amh (ENSOTSG00005031275)	oaz1a (ENSOTSG00005031272)	org (ENSOTSG00005031270)	lingo3a (ENSOTSG00005031269)	nfil3-4 (ENSOTSG00005031267)	ENSOTSG00005031265	lrrc40 (ENSOTSG00005031078)	sox2 (ENSOTSG00005031077) #24	fxr1 (ENSOTSG00005031076) #22	dnajc19 (ENSOTSG00005031074) #23	fxr1 (ENSOTSG00005031073) #22	ttc14 (ENSOTSG00005031072) #19	LRRC24 (ENSOTSG00005031071)	ENSOTSG00005031070	ENSOTSG00005031069	ENSOTSG00005031068	gpc1a (ENSOTSG00005031065)	ENSOTSG00005031062	gpc5b (ENSOTSG00005031061)	aqp12 (ENSOTSG00005031060)	rpp21 (ENSOTSG00005031059)	ENSOTSG00005030643	ENSOTSG00005030636	ankrd29 (ENSOTSG00005030632)
Oncorhynchus	DUPLICATION
Oncorhynchus	ANCESTRAL SPECIES	636															ENSGT00940000180153	ENSGT00950000183189.a.b.a.k.b.a #22
Rainbow trout	MODERN SPECIES	26	ing5a (ENSOMYG00000012904)	cep19 (ENSOMYG00000012916)	pigx (ENSOMYG00000077222)	pak2b (ENSOMYG00000013013)	ENSOMYG00000052220	ENSOMYG00000013685	gpc5b (ENSOMYG00000013692)	ENSOMYG00000068930	gpc1a (ENSOMYG00000013713)	ENSOMYG00000013782	ENSOMYG00000013852	ENSOMYG00000014127	ENSOMYG00000075544	ENSOMYG00000059700	ENSOMYG00000062422	ENSOMYG00000014274 #22	ENSOMYG00000015299 #23	LRRC40 (ENSOMYG00000015333)	LRRC7 (ENSOMYG00000015364)	ENSOMYG00000075779	depdc1a (ENSOMYG00000015417)	RPE65 (ENSOMYG00000015503)	si:ch211-198n5.11 (ENSOMYG00000015763)	ENSOMYG00000016042	ENSOMYG00000017088	ENSOMYG00000017216	ENSOMYG00000017784	gclm (ENSOMYG00000017785)	ENSOMYG00000017789	spata6 (ENSOMYG00000017805)	ENSOMYG00000057857
Oncorhynchus_a	ANCESTRAL SPECIES	14	ENSGT00940000154973.a.b.a	ENSGT00390000013989.a.n	ENSGT00940000158159.d	ENSGT00390000016356	ENSGT00390000017679	ENSGT00950000182988.a.a.b.i	ENSGT00390000003020.d	ENSGT00530000063816.d.m	ENSGT01050000244955.b.c.c	ENSGT01050000244897.a.a.b.b.a	ENSGT00460000041630	ENSGT00940000155297.hb.b.b	ENSGT00990000204094.c.b	ENSGT00940000160141.e.b.a	ENSGT00940000180153	ENSGT00950000183189.a.b.a.k.b.a #22	ENSGT00940000154384 #23	ENSGT00950000183189.a.b.a.k.a #22	ENSGT00940000156968.o	ENSGT00940000156262.y	ENSGT00950000182976.b.a.d	ENSGT00950000182913.B.f.f	ENSGT00940000164186.a	ENSGT00950000183047.c.b.h	ENSGT00940000154130.a.a.b.m	ENSGT00940000157546	ENSGT00510000047658.c	ENSGT00510000048142.v	ENSGT00530000063821.a	ENSGT00390000001724.l.a.b	ENSGT00940000155042.a.a.f
Coho salmon	MODERN SPECIES	4	plekhb2 (ENSOKIG00005035902)	ENSOKIG00005035851	pigx (ENSOKIG00005035834)	cep19 (ENSOKIG00005035826)	PAK2 (ENSOKIG00005035217)	RPP21 (ENSOKIG00005035109)	ENSOKIG00005035097	gpc5b (ENSOKIG00005035079)	gpc1a (ENSOKIG00005034952)	ENSOKIG00005034923	ENSOKIG00005034896	EPHB1 (ENSOKIG00005034400)	ENSOKIG00005034359	LRRC24 (ENSOKIG00005034351)	ENSOKIG00005034304	fxr1 (ENSOKIG00005034123) #22	dnajc19 (ENSOKIG00005034062) #23	ENSOKIG00005034048	lrrc40 (ENSOKIG00005033596)	ENSOKIG00005033541	LRRC7 (ENSOKIG00005033328)	depdc1a (ENSOKIG00005033179)	RPE65 (ENSOKIG00005032666)	si:ch211-198n5.11 (ENSOKIG00005032544)	FNBP1L (ENSOKIG00005031481)	bcar3 (ENSOKIG00005031321)	ENSOKIG00005031306	slc5a9 (ENSOKIG00005031041)	gclm (ENSOKIG00005030983)	ENSOKIG00005030940	spata6 (ENSOKIG00005030930)
Oncorhynchus	ANCESTRAL SPECIES	8	ENSGT00940000153902.a.f	ENSGT00940000154973.a.b.a	ENSGT00390000013989.a.n	ENSGT00940000158159.d	ENSGT00390000016356	ENSGT00390000017679	ENSGT00950000182988.a.a.b.i	ENSGT00390000003020.d	ENSGT00530000063816.d.m	ENSGT01050000244955.b.c.c	ENSGT01050000244897.a.a.b.b.a	ENSGT00460000041630	ENSGT00940000155297.hb.b.b	ENSGT00990000204094.c.b	ENSGT00940000160141.e.b.a	ENSGT00950000183189.a.b.a.k.b.b #22	ENSGT00940000154384 #23	ENSGT00950000183189.a.b.a.k.a #22	ENSGT00940000156968.o	ENSGT00940000156262.y	ENSGT00950000182976.b.a.d	ENSGT00950000182913.B.f.f	ENSGT00940000164186.a	ENSGT00950000183047.c.b.h	ENSGT00940000154130.a.a.b.m	ENSGT00940000157546	ENSGT00510000047658.c	ENSGT00510000048142.v	ENSGT00530000063821.a	ENSGT00390000001724.l.a.b	ENSGT00940000155042.a.a.f
Rainbow trout	DUPLICATION
Rainbow trout	MODERN SPECIES	129																ENSOMYG00000063461 #22	ENSOMYG00000075353 #23
Rainbow trout	MODERN SPECIES	164																ENSOMYG00000058764 #22	ENSOMYG00000076712 #23
Huchen	MODERN SPECIES	823															LRRC24 (ENSHHUG00000031882)	fxr1 (ENSHHUG00000031921) #22	dnajc19 (ENSHHUG00000033755) #23	sox2 (ENSHHUG00000033803) #24	lrrc40 (ENSHHUG00000033830)	LRRC7 (ENSHHUG00000033986)
Protacanthopterygii	ANCESTRAL SPECIES	104														ENSGT00950000182865.b.a.b.b.a.a.a	ENSGT00390000013701 #19	ENSGT00950000183189.a.b.a.l #22	ENSGT00950000183189.a.b.a.k #22	ENSGT00940000154384 #23	ENSGT00940000160614 #24	ENSGT00940000156968.o	ENSGT00960000186843	ENSGT00940000156968.p	ENSGT00940000156262	ENSGT00950000182976.b.a	ENSGT00950000182913.B.f	ENSGT00940000164186.a	ENSGT00950000183047.c.b	ENSGT00940000154130.a.a.b	ENSGT00940000165232	ENSGT00940000157546	ENSGT00510000047658
Salmoninae	ANCESTRAL SPECIES	363												ENSGT00940000154507.t	ENSGT00940000160141.e.b.b	ENSGT00980000203290	ENSGT00390000013701.s #19	ENSGT00950000183189.a.b.a.l #22	ENSGT00940000160614.j #24	ENSGT00940000156968.p	ENSGT00940000156262.z	ENSGT00950000182976.b.a.c	ENSGT00950000182913.B.f.e	ENSGT00950000183047.c.b.g	ENSGT00940000154130.a.a.b.n	ENSGT00940000165232.g	ENSGT00510000047658.d	ENSGT00510000048142.u	ENSGT00390000001724.l.b.a	ENSGT00940000155042.a.a.e	ENSGT00390000001724.l.a	ENSGT00940000155042.a.b	ENSGT00940000157399.b
Huchen	MODERN SPECIES	398													ENSHHUG00000050079	LRRC24 (ENSHHUG00000050076)	ttc14 (ENSHHUG00000050074) #19	fxr1 (ENSHHUG00000050063) #22	ENSHHUG00000050059	sox2 (ENSHHUG00000050049) #24	LRRC7 (ENSHHUG00000049968)	ENSHHUG00000049946	RPE65 (ENSHHUG00000049867)	ENSHHUG00000049862	fnbp1l (ENSHHUG00000049849)	bcar3 (ENSHHUG00000049830)	zgc:171480 (ENSHHUG00000049818)	gclm (ENSHHUG00000049802)	dnttip2 (ENSHHUG00000049791)	AGBL4 (ENSHHUG00000049771)
Salmoninae_a	ANCESTRAL SPECIES	9	ENSGT00940000153321.b.a.n.b	ENSGT00940000153902.a.e	ENSGT00940000154973.a.b.b	ENSGT00390000013989.a.m	ENSGT00940000158159.c	ENSGT00950000182988.a.a.b.j	ENSGT00390000003020.c	ENSGT00530000063816.d.n	ENSGT01050000244955.b.c.d	ENSGT01050000244897.a.a.b.b.b	ENSGT00940000155297.hb.b.a	ENSGT00940000154507.t	ENSGT00940000160141.e.b.b	ENSGT00980000203290	ENSGT00390000013701.s #19	ENSGT00950000183189.a.b.a.l #22	ENSGT00940000160614.j #24	ENSGT00940000156968.p	ENSGT00940000156262.z	ENSGT00950000182976.b.a.c	ENSGT00950000182913.B.f.e	ENSGT00950000183047.c.b.g	ENSGT00940000154130.a.a.b.n	ENSGT00940000165232.g	ENSGT00510000047658.d	ENSGT00510000048142.u	ENSGT00390000001724.l.b.a	ENSGT00940000155042.a.a.e	ENSGT00390000001724.l.a.a	ENSGT00940000155042.a.b	ENSGT00940000157399.b
Oncorhynchus	ANCESTRAL SPECIES		ENSGT00940000153321.b.a.n.b	ENSGT00940000153902.a.e	ENSGT00940000154973.a.b.b	ENSGT00390000013989.a.m	ENSGT00940000158159.c	ENSGT00950000182988.a.a.b.j	ENSGT00390000003020.c	ENSGT00530000063816.d.n	ENSGT01050000244955.b.c.d	ENSGT01050000244897.a.a.b.b.b	ENSGT00940000155297.hb.b.a	ENSGT00940000154507.t	ENSGT00940000160141.e.b.b	ENSGT00980000203290	ENSGT00390000013701.s #19	ENSGT00950000183189.a.b.a.l #22	ENSGT00940000156968.p	ENSGT00940000156262.z	ENSGT00950000182976.b.a.c	ENSGT00950000182913.B.f.e	ENSGT00950000183047.c.b.g	ENSGT00940000154130.a.a.b.n	ENSGT00940000165232.g	ENSGT00510000047658.d	ENSGT00510000048142.u	ENSGT00390000001724.l.b.a	ENSGT00940000155042.a.a.e	ENSGT00390000001724.l.a.a	ENSGT00940000155042.a.b	ENSGT00940000157399.b	ENSGT00940000161649.e
Oncorhynchus_a	ANCESTRAL SPECIES		ENSGT00940000153321.b.a.n.b	ENSGT00940000153902.a.e	ENSGT00940000154973.a.b.b	ENSGT00390000013989.a.m	ENSGT00940000158159.c	ENSGT00950000182988.a.a.b.j	ENSGT00390000003020.c	ENSGT00530000063816.d.n	ENSGT01050000244955.b.c.d	ENSGT01050000244897.a.a.b.b.b	ENSGT00940000155297.hb.b.a	ENSGT00940000154507.t	ENSGT00940000160141.e.b.b	ENSGT00980000203290	ENSGT00390000013701.s #19	ENSGT00950000183189.a.b.a.l #22	ENSGT00940000156968.p	ENSGT00940000156262.z	ENSGT00950000182976.b.a.c	ENSGT00950000182913.B.f.e	ENSGT00950000183047.c.b.g	ENSGT00940000154130.a.a.b.n	ENSGT00940000165232.g	ENSGT00510000047658.d	ENSGT00510000048142.u	ENSGT00940000155042.a.a.e	ENSGT00390000001724.l.a.a	ENSGT00940000155042.a.b	ENSGT00940000157399.b	ENSGT00940000161649.e	ENSGT00940000154831.h.b
Chinook salmon	MODERN SPECIES		ankrd29 (ENSOTSG00005022010)	ENSOTSG00005022012	plekhb2 (ENSOTSG00005022014)	ENSOTSG00005022015	ing5a (ENSOTSG00005022017)	pak2b (ENSOTSG00005022019)	ENSOTSG00005022049	rpp21 (ENSOTSG00005022052)	aqp12 (ENSOTSG00005022055)	gpc5b (ENSOTSG00005022063)	EPHB1 (ENSOTSG00005022087)	ENSOTSG00005023138	LRRC24 (ENSOTSG00005023139)	ENSOTSG00005023140	ttc14 (ENSOTSG00005023142) #19	fxr1 (ENSOTSG00005023147) #22	lrrc40 (ENSOTSG00005023153)	LRRC7 (ENSOTSG00005023156)	bcar3 (ENSOTSG00005023225)	zgc:171480 (ENSOTSG00005023796)	gclm (ENSOTSG00005023797)	dnttip2 (ENSOTSG00005023798)	AGBL4 (ENSOTSG00005023799)	bend5 (ENSOTSG00005023801)	ENSOTSG00005023802	agbl4 (ENSOTSG00005023803)	elavl4 (ENSOTSG00005023804)	dmrta2 (ENSOTSG00005024723)	faf1 (ENSOTSG00005024724)	cdkn2c (ENSOTSG00005025367)	ENSOTSG00005025368
Coho salmon	MODERN SPECIES	1	plekhb2 (ENSOKIG00005045179)	ing5a (ENSOKIG00005045202)	pak2b (ENSOKIG00005045291)	rpp21 (ENSOKIG00005045364)	aqp12 (ENSOKIG00005045372)	gpc5b (ENSOKIG00005045379)	gpc1a (ENSOKIG00005045403)	ENSOKIG00005045424	EPHB1 (ENSOKIG00005045460)	ENSOKIG00005045550	ENSOKIG00005045556	ENSOKIG00005045564	LRRC24 (ENSOKIG00005045578)	ENSOKIG00005045586	ttc14 (ENSOKIG00005045600) #19	ENSOKIG00005045700 #22	LRRC40 (ENSOKIG00005045734)	LRRC7 (ENSOKIG00005045795)	DEPDC1 (ENSOKIG00005045926)	ENSOKIG00005045956	RPE65 (ENSOKIG00005045996)	fnbp1l (ENSOKIG00005046644)	bcar3 (ENSOKIG00005046712)	ENSOKIG00005046725	ENSOKIG00005046729	gclm (ENSOKIG00005046734)	dnttip2 (ENSOKIG00005046742)	AGBL4 (ENSOKIG00005046746)	bend5 (ENSOKIG00005046749)	agbl4 (ENSOKIG00005046754)	elavl4 (ENSOKIG00005046766)
Rainbow trout	MODERN SPECIES	22	ENSOMYG00000020955	plekhb2 (ENSOMYG00000020988)	ENSOMYG00000021002	ENSOMYG00000021235	ENSOMYG00000022895	ENSOMYG00000022904	gpc1a (ENSOMYG00000022966)	ENSOMYG00000064696	ENSOMYG00000023572	ENSOMYG00000068701	ENSOMYG00000012367	ENSOMYG00000025776	ENSOMYG00000025794	ENSOMYG00000025802	ENSOMYG00000025899 #19	ENSOMYG00000026170 #22	ENSOMYG00000057336	LRRC7 (ENSOMYG00000026410)	ENSOMYG00000055547	ENSOMYG00000026674	RPE65 (ENSOMYG00000027040)	fnbp1l (ENSOMYG00000027907)	ENSOMYG00000028020	zgc:171480 (ENSOMYG00000028076)	dnttip2 (ENSOMYG00000028177)	bend5 (ENSOMYG00000002676)	ENSOMYG00000055718	elavl4 (ENSOMYG00000002966)	dmrta2 (ENSOMYG00000003182)	faf1 (ENSOMYG00000003274)	ENSOMYG00000074743
Salmo	ANCESTRAL SPECIES	20	ENSGT00940000153321.b.a.n.b	ENSGT00940000153902.a.e	ENSGT00940000154973.a.b.b	ENSGT00390000013989.a.m	ENSGT00940000158159.c	ENSGT00950000182988.a.a.b.j	ENSGT00530000063816.d.n	ENSGT00390000003020.c	ENSGT01050000244955.b.c.d	ENSGT01050000244897.a.a.b.b.b	ENSGT00940000155297.hb.b.a	ENSGT00940000154507.t	ENSGT00940000160141.e.b.b	ENSGT00980000203290	ENSGT00390000013701.s #19	ENSGT00950000183189.a.b.a.l #22	ENSGT00940000160614.j #24	ENSGT00940000156968.p	ENSGT00940000156262.z	ENSGT00950000182976.b.a.c	ENSGT00950000182913.B.f.e	ENSGT00950000183047.c.b.g	ENSGT00940000154130.a.a.b.n	ENSGT00940000165232.g	ENSGT00510000047658.d	ENSGT00510000048142.u	ENSGT00390000001724.l.b.a	ENSGT00940000157399.b	ENSGT00940000161649.e	ENSGT00940000154831.h.b	ENSGT00940000160194.k
Atlantic salmon	MODERN SPECIES	15	ENSSSAG00000045684	ankrd29 (ENSSSAG00000086124)	ENSSSAG00000044992	ENSSSAG00000044949	ENSSSAG00000041114	ENSSSAG00000042555	ENSSSAG00000082107	ENSSSAG00000101423	ENSSSAG00000086964	gpc5b (ENSSSAG00000043871)	gpc1a (ENSSSAG00000042394)	ephb1 (ENSSSAG00000041250)	ENSSSAG00000041180	ENSSSAG00000041164	ttc14 (ENSSSAG00000041099) #19	ENSSSAG00000118997 #22	sox2 (ENSSSAG00000088464) #24	ENSSSAG00000085029	ENSSSAG00000084166	ENSSSAG00000041043	ENSSSAG00000040989	LRRC7 (ENSSSAG00000012965)	DEPDC1 (ENSSSAG00000011177)	RPE65 (ENSSSAG00000008787)	fnbp1l (ENSSSAG00000080709)	bcar3 (ENSSSAG00000080653)	zgc:171480 (ENSSSAG00000080639)	gclm (ENSSSAG00000094075)	dnttip2 (ENSSSAG00000080634)	bend5 (ENSSSAG00000080616)	elavl4 (ENSSSAG00000080587)
Northern pike	MODERN SPECIES	7	OSBPL1A (ENSELUG00000013634)	ttc39c (ENSELUG00000013479)	ENSELUG00000013401	ankrd29 (ENSELUG00000013386)	plekhb2 (ENSELUG00000013300)	ing5 (ENSELUG00000013274)	cep19 (ENSELUG00000013204)	pigx (ENSELUG00000013193)	pak2b (ENSELUG00000013169)	PTGER3 (ENSELUG00000013065)	zranb2 (ENSELUG00000013041)	EPHB1 (ENSELUG00000013008)	LRRC24 (ENSELUG00000012962)	ENSELUG00000000468	ttc14 (ENSELUG00000012936) #19	fxr1 (ENSELUG00000012917) #22	dnajc19 (ENSELUG00000012861) #23	sox2 (ENSELUG00000012841) #24	lrrc40 (ENSELUG00000012790)	LRRC7 (ENSELUG00000012686)	depdc1a (ENSELUG00000012378)	rpe65b (ENSELUG00000012274)	si:ch211-198n5.11 (ENSELUG00000001601)	mmachc (ENSELUG00000012175)	ENSELUG00000012158	ENSELUG00000012150	ENSELUG00000012123	IPO13 (ENSELUG00000001498)	pfas (ENSELUG00000011791)	ENSELUG00000011714	hook1 (ENSELUG00000011682)
Osteoglossiformes	DUPLICATION
Osteoglossiformes	DUPLICATION
Osteoglossiformes	ANCESTRAL SPECIES	221															ENSGT00390000015010 #20	ENSGT00950000183189.a.b.a.m.a #22	ENSGT00940000154384 #23	ENSGT00940000160614 #24	ENSGT00940000156162.C #26	ENSGT00940000154552.i #27	ENSGT00940000153783.b.b.d.h	ENSGT00940000159676.b #31	ENSGT00940000156299.fb	ENSGT00950000183039.B.b.d ##7	ENSGT00940000155531.a.b	ENSGT00950000183039.B.a #7	ENSGT00390000018195	ENSGT00940000165367.b	ENSGT00940000167389	ENSGT00940000158024.B.e	ENSGT01100000263484.A.c.a.a.b
P. kingsleyae	MODERN SPECIES	279												ENSPKIG00000014384	ENSPKIG00000014373	CCDC39 (ENSPKIG00000014216) #20	dnajc19 (ENSPKIG00000014152) #23	fxr1 (ENSPKIG00000014091) #22	sox2 (ENSPKIG00000014053) #24	ATP11B (ENSPKIG00000013980) #26	dcun1d1 (ENSPKIG00000013939) #27	EIF4A2 (ENSPKIG00000013856)	b3gnt5b (ENSPKIG00000013843) #31	ENSPKIG00000013678 #32	ect2 (ENSPKIG00000013550)	nlgn1 (ENSPKIG00000013470)
Asian bonytongue	MODERN SPECIES	17	OPA1 (ENSSFOG00015012833)	ENSSFOG00015028539	ENSSFOG00015031548	fam43a (ENSSFOG00015028212)	b3gnt7 (ENSSFOG00015013183)	ENSSFOG00015013153	ENSSFOG00015031576	DIS3L2 (ENSSFOG00015013209)	ACAP2 (ENSSFOG00015013347)	HTR2B (ENSSFOG00015026796)	ENSSFOG00015013467	eif2b5 (ENSSFOG00015013408)	ENSSFOG00015026000	ENSSFOG00015029763	CCDC39 (ENSSFOG00015013492) #20	fxr1 (ENSSFOG00015013518) #22	dnajc19 (ENSSFOG00015013549) #23	sox2 (ENSSFOG00015033213) #24	ENSSFOG00015013618 #26	dcun1d1 (ENSSFOG00015013831) #27	EIF4A2 (ENSSFOG00015013858)	b3gnt5b (ENSSFOG00015014030) #31	ENSSFOG00015013908 #32	ect2 (ENSSFOG00015014038)	nlgn1 (ENSSFOG00015014077)	ENSSFOG00015014101	kcnmb2 (ENSSFOG00015028985) ##7	PIK3CA (ENSSFOG00015014161)	KCNMB3 (ENSSFOG00015014201) #7	polr2h (ENSSFOG00015014221)	ENSSFOG00015014240
Osteoglossiformes	ANCESTRAL SPECIES																	ENSGT00950000183189.a.b.a.m.b #22
P. kingsleyae	MODERN SPECIES	177	tmem44 (ENSPKIG00000002946)	lsg1 (ENSPKIG00000002895)	fam43a (ENSPKIG00000002870)	XXYLT1 (ENSPKIG00000002844)	ARMC9 (ENSPKIG00000002681)	b3gnt7 (ENSPKIG00000002643)	ncl (ENSPKIG00000002604)	nppc (ENSPKIG00000002587)	ENSPKIG00000002559	alpi.1 (ENSPKIG00000002501)	ppp1r2 (ENSPKIG00000002482)	acap2b (ENSPKIG00000002327)	htr2b (ENSPKIG00000002239)	psmd1 (ENSPKIG00000002162)	ttc14 (ENSPKIG00000002114) #19	fxr1 (ENSPKIG00000002030) #22	sox2 (ENSPKIG00000001950) #24	rpf1 (ENSPKIG00000001892)	ctbs (ENSPKIG00000001857)
Osteoglossiformes	ANCESTRAL SPECIES	170	ENSGT01030000234960	ENSGT00940000161593	ENSGT00940000158154	ENSGT00390000018026	ENSGT00940000157606.k	ENSGT00940000163473.i	ENSGT00390000015492.B.b	ENSGT00950000183063.c.b.b	ENSGT00950000183063.c.b.a	ENSGT00390000004757	ENSGT00940000156389.a	ENSGT01050000244937.a.b.b	ENSGT00940000153386.A	ENSGT00940000174617	ENSGT00390000013701 #19	ENSGT00950000183189.a.b.a.n #22	ENSGT00940000154552.j #27	ENSGT00940000156941 #28	ENSGT00950000182899.C.a	ENSGT00950000182930.B	ENSGT00940000153783.b.b.d.g	ENSGT00550000074917	ENSGT00940000161734 #32	ENSGT00940000159676.a #31	ENSGT00940000156299.gb	ENSGT00940000155789	ENSGT01030000234598.a.b	ENSGT00940000153421.a.a.b	ENSGT00950000183039.B.b.c ##7	ENSGT00730000111202	ENSGT00940000155531.b
Asian bonytongue	MODERN SPECIES	23	fam43a (ENSSFOG00015027992)	ENSSFOG00015008782	XXYLT1 (ENSSFOG00015008748)	ARMC9 (ENSSFOG00015008670)	b3gnt7 (ENSSFOG00015008624)	ncl (ENSSFOG00015008583)	nppc (ENSSFOG00015008559)	alpi.1 (ENSSFOG00015008524)	alpi.2 (ENSSFOG00015008482)	ppp1r2 (ENSSFOG00015008470)	acap2b (ENSSFOG00015008404)	psmd1 (ENSSFOG00015008285)	htr2b (ENSSFOG00015008356)	ENSSFOG00015033248	ttc14 (ENSSFOG00015008195) #19	FXR1 (ENSSFOG00015008103) #22	ATP11B (ENSSFOG00015007895) #26	ENSSFOG00015007841 #27	mccc1 (ENSSFOG00015007784) #28	ENSSFOG00015007762	ENSSFOG00015007642	eif4a2 (ENSSFOG00015007526)	rfc4 (ENSSFOG00015007485)	ENSSFOG00015007390 #32	b3gnt5a (ENSSFOG00015007473) #31	ECT2 (ENSSFOG00015007297)	ENSSFOG00015026188	NLGN1 (ENSSFOG00015007276)	NLGN1 (ENSSFOG00015025005)	NAALADL2 (ENSSFOG00015007188)	gngt2a (ENSSFOG00015028680)
Spotted gar	MODERN SPECIES	652														ttc14 (ENSLOCG00000000432) #19	CCDC39 (ENSLOCG00000000553) #20	fxr1 (ENSLOCG00000000589) #22	dnajc19 (ENSLOCG00000000624) #23	sox2 (ENSLOCG00000017346) #24	ATP11B (ENSLOCG00000000659) #26	dcun1d1 (ENSLOCG00000000735) #27	ENSLOCG00000000758	mccc1 (ENSLOCG00000000778) #28	ENSLOCG00000000806	ENSLOCG00000000828	eif4a2 (ENSLOCG00000000847)	rfc4 (ENSLOCG00000000876)	ENSLOCG00000000896 #32	b3gnt5a (ENSLOCG00000017371) #31	ect2 (ENSLOCG00000000941)	SPATA16 (ENSLOCG00000000975)	nlgn1 (ENSLOCG00000000991)
Reedfish	MODERN SPECIES	10	slc19a3b (ENSECRG00000013661)	SLC19A3 (ENSECRG00000013619)	agfg1b (ENSECRG00000013605)	TM4SF20 (ENSECRG00000013585)	mrpl44 (ENSECRG00000013575)	mffb (ENSECRG00000013552)	COL4A4 (ENSECRG00000013507)	rhbdd1 (ENSECRG00000013491)	IRS1 (ENSECRG00000013482)	NYAP2 (ENSECRG00000013473)	MECOM (ENSECRG00000013444)	megf6 (ENSECRG00000013193)	CCDC39 (ENSECRG00000013005) #20	ttc14 (ENSECRG00000012645) #19	CCDC39 (ENSECRG00000012508) #20	fxr1 (ENSECRG00000012461) #22	dnajc19 (ENSECRG00000012439) #23	sox2 (ENSECRG00000012429) #24	ENSECRG00000012422	ATP11B (ENSECRG00000012239) #26	dcun1d1 (ENSECRG00000012170) #27	ENSECRG00000012146	mccc1 (ENSECRG00000012124) #28	ENSECRG00000012114	ENSECRG00000012094	eif4a2 (ENSECRG00000012026)	rfc4 (ENSECRG00000011992)	b3gnt5a (ENSECRG00000011979) #31	MCF2L2 (ENSECRG00000011952) #32	ect2 (ENSECRG00000011854)	SPATA16 (ENSECRG00000011817)
Elephant shark	MODERN SPECIES	1680			fgf12a (ENSCMIG00000013826)	ENSCMIG00000013828	ENSCMIG00000013829	GMNC (ENSCMIG00000013831)	ENSCMIG00000013833	ENSCMIG00000013836	eif2b5 (ENSCMIG00000013845)	ENSCMIG00000013887	DVL3 (ENSCMIG00000013891)	ap2m1 (ENSCMIG00000013908)	ENSCMIG00000013941	ENSCMIG00000013958	CCDC39 (ENSCMIG00000013975) #20	fxr1 (ENSCMIG00000013999) #22	dnajc19 (ENSCMIG00000014072) #23	sox2 (ENSCMIG00000014077) #24	ATP11B (ENSCMIG00000014084) ##26	dcun1d1 (ENSCMIG00000014124) #27	adprhl1 (ENSCMIG00000014127)	mccc1 (ENSCMIG00000014137) #28	ENSCMIG00000014153 #32
Gnathostomata	ANCESTRAL SPECIES	1	ENSGT00530000063353.b	ENSGT01100000263502.A.a.a.a.a	ENSGT01070000253816.a.b	ENSGT00940000158723	ENSGT00940000153425	ENSGT00940000163390	ENSGT00940000162539	ENSGT00940000160788	ENSGT00940000163347	ENSGT00940000159516	ENSGT00940000156974	ENSGT00940000158878	ENSGT00940000162359	ENSGT00940000160971	ENSGT00940000161248	ENSGT00950000183189.a.b.b ##22	ENSGT00950000182974.a.a.a.a	ENSGT00940000156803	ENSGT00940000163031	ENSGT00440000033329.b.a.b	ENSGT00390000013770	ENSGT00440000033895	ENSGT00550000074891	ENSGT00940000160633	ENSGT01090000260076.b.a	ENSGT00950000183196.D.b	ENSGT00390000005094	ENSGT00940000158347	ENSGT00940000159451	ENSGT00940000164304	ENSGT00390000017980
Euteleostomi	ANCESTRAL SPECIES	20	ENSGT01100000263502.A.a.a.a.a	ENSGT01070000253816.a.b	ENSGT00940000158723	ENSGT00940000165126	ENSGT00940000163390	ENSGT00940000162539	ENSGT00940000163347	ENSGT00940000160788	ENSGT00940000162313	ENSGT00940000159516	ENSGT00940000156974	ENSGT00940000158878	ENSGT00940000162359	ENSGT00940000160971	ENSGT00940000161248	ENSGT00950000183189.a.b.b ##22	ENSGT00950000182974.a.a.a.a	ENSGT00940000156803	ENSGT00940000163031.b.b	ENSGT00440000033329.b.a.b	ENSGT00390000013770	ENSGT00440000033895	ENSGT00940000160633	ENSGT01090000260076.b.a	ENSGT00950000183196.D.b	ENSGT00390000005094	ENSGT00940000158347	ENSGT00940000167197	ENSGT00940000159451	ENSGT01050000245018	ENSGT00940000164304
Sarcopterygii	ANCESTRAL SPECIES	4	ENSGT01100000263502.A.a.a.a.a	ENSGT01070000253816.a.b	ENSGT00940000158723	ENSGT00940000165126	ENSGT00940000163390	ENSGT00940000162539	ENSGT00940000163347	ENSGT00940000160788	ENSGT00940000162313	ENSGT00940000159516	ENSGT00940000156974	ENSGT00940000158878	ENSGT00940000162359	ENSGT00940000160971	ENSGT00940000161248	ENSGT00950000183189.a.b.b ##22	ENSGT00950000182974.a.a.a.a	ENSGT00940000156803	ENSGT00730000111366	ENSGT00940000157029	ENSGT00940000153669.b	ENSGT00940000154344.a	ENSGT00940000153299	ENSGT00940000160515	ENSGT00390000017980	ENSGT00940000164304	ENSGT01050000245018	ENSGT00940000159451	ENSGT00940000167197	ENSGT00940000158347	ENSGT00390000005094
Tetrapoda	ANCESTRAL SPECIES	20	ENSGT01100000263502.A.a.a.a.a	ENSGT01070000253816.a.b	ENSGT00940000158723	ENSGT00940000153425	ENSGT00940000163390	ENSGT00940000162539	ENSGT00940000160788	ENSGT00940000163347	ENSGT00940000162313	ENSGT00940000159516	ENSGT00940000156974	ENSGT00940000158878	ENSGT00940000162359	ENSGT00940000160971	ENSGT00940000161248	ENSGT00950000183189.a.b.b ##22	ENSGT00950000182974.a.a.a.a	ENSGT00940000156803	ENSGT00940000158388	ENSGT00940000157452	ENSGT00390000012182	ENSGT00730000111366	ENSGT00940000157029	ENSGT00940000153669.b	ENSGT00940000154344.a	ENSGT00940000153299	ENSGT00940000160515	ENSGT00390000017980	ENSGT00940000164304	ENSGT01050000245018	ENSGT00940000159451
Amniota	ANCESTRAL SPECIES	24	ENSGT01100000263502.A.a.a.a.a	ENSGT01070000253816.a.b	ENSGT00940000158723	ENSGT00940000153425	ENSGT00940000163390	ENSGT00940000162539	ENSGT00940000160788	ENSGT00940000163347	ENSGT00940000162313	ENSGT00940000159516	ENSGT00940000156974	ENSGT00940000158878	ENSGT00940000162359	ENSGT00940000160971	ENSGT00940000161248	ENSGT00950000183189.a.b.b ##22	ENSGT00950000182974.a.a.a.a	ENSGT00940000156803	ENSGT00940000158388	ENSGT00940000157452	ENSGT00390000012182	ENSGT00730000111366	ENSGT00940000157029	ENSGT00940000153669.b	ENSGT00940000154344.a	ENSGT00940000153299.d	ENSGT00940000160515	ENSGT00390000017980	ENSGT00940000164304	ENSGT01050000245018	ENSGT00940000159451
Sauria	ANCESTRAL SPECIES	21	ENSGT00390000009902	ENSGT00530000063353.b	ENSGT01100000263502.A.a.a.a.a	ENSGT01070000253816.a.b	ENSGT00940000158723	ENSGT00940000153425	ENSGT00940000163390	ENSGT00940000160788	ENSGT00940000162313	ENSGT00940000159516	ENSGT00940000156974	ENSGT00940000158878	ENSGT00940000162359	ENSGT00940000160971	ENSGT00940000161248	ENSGT00950000183189.a.b.b ##22	ENSGT00950000182974.a.a.a.a	ENSGT00940000156803	ENSGT00940000158388	ENSGT00940000157452	ENSGT00390000012182	ENSGT00730000111366	ENSGT00940000157029	ENSGT00940000153669.b	ENSGT00940000154344.a	ENSGT00940000153299.d	ENSGT00940000160515	ENSGT00390000017980	ENSGT00940000164304	ENSGT01050000245018	ENSGT00940000159451
Lepidosauria	ANCESTRAL SPECIES	30	ENSGT00390000009902	ENSGT00530000063353.b	ENSGT01100000263502.A.a.a.a.a	ENSGT01070000253816.a.b	ENSGT00940000158723	ENSGT00940000153425	ENSGT00940000163390	ENSGT00940000160788	ENSGT00940000162313	ENSGT00940000159516	ENSGT00940000156974	ENSGT00940000158878	ENSGT00940000162359	ENSGT00940000160971	ENSGT00940000161248	ENSGT00950000183189.a.b.b ##22	ENSGT00950000182974.a.a.a.a	ENSGT00940000156803	ENSGT00940000158388	ENSGT00940000157452	ENSGT00390000012182	ENSGT00730000111366	ENSGT00940000157029	ENSGT00940000153669.b	ENSGT00940000154344.a	ENSGT00940000153299.d	ENSGT00940000160515	ENSGT00390000017980	ENSGT00940000164304	ENSGT00940000159451	ENSGT01050000245018
Episquamata	ANCESTRAL SPECIES	14	ENSGT00530000063353.b	ENSGT01100000263502.A.a.a.a.a	ENSGT01070000253816.a.b	ENSGT00940000158723	ENSGT00940000153425	ENSGT00940000163390	ENSGT00940000160788	ENSGT00940000162313	ENSGT00940000159516.p	ENSGT00940000159516.o	ENSGT00940000156974	ENSGT00940000158878	ENSGT00940000162359	ENSGT00940000160971	ENSGT00940000161248	ENSGT00950000183189.a.b.b ##22	ENSGT00950000182974.a.a.a.a	ENSGT00940000156803	ENSGT00940000158388	ENSGT00940000157452	ENSGT00390000012182	ENSGT00730000111366	ENSGT00940000157029	ENSGT00940000153669.b	ENSGT00940000154344.a	ENSGT00940000153299.d	ENSGT00940000160515	ENSGT00390000017980	ENSGT00940000164304	ENSGT00940000159451	ENSGT01050000245018
Laterata	ANCESTRAL SPECIES	32	ENSGT00530000063353.b	ENSGT01100000263502.A.a.a.a.a	ENSGT01070000253816.a.b	ENSGT00940000158723	ENSGT00940000153425	ENSGT00940000163390	ENSGT00940000160788	ENSGT00940000163347	ENSGT00940000159516.p	ENSGT00940000159516.o	ENSGT00940000156974	ENSGT00940000158878	ENSGT00940000162359	ENSGT00940000160971	ENSGT00940000161248	ENSGT00950000183189.a.b.b ##22	ENSGT00950000182974.a.a.a.a	ENSGT00940000156803	ENSGT00940000158388	ENSGT00940000157452	ENSGT00390000012182	ENSGT00730000111366	ENSGT00940000157029	ENSGT00940000153669.b	ENSGT00940000154344.a	ENSGT00940000153299.d	ENSGT00940000160515	ENSGT00390000017980	ENSGT00940000164304	ENSGT00940000159451	ENSGT00940000158347
Common wall lizard	MODERN SPECIES	419	ENSPMRG00000022514	ENSPMRG00000022508	MCF2 (ENSPMRG00000022135)	ENSPMRG00000022025	ATP11C (ENSPMRG00000021983)	SOX3 (ENSPMRG00000021966)	ENSPMRG00000021950	ENSPMRG00000021939	ENSPMRG00000021929	SLITRK4 (ENSPMRG00000021922)	ENSPMRG00000021914	SLITRK2 (ENSPMRG00000021906)	ENSPMRG00000021894	ENSPMRG00000021889	ENSPMRG00000021884	FMR1 (ENSPMRG00000021869) ##22	AFF2 (ENSPMRG00000021844)	IDS (ENSPMRG00000021834)	TMEM185A (ENSPMRG00000021825)	ENSPMRG00000021821	ENSPMRG00000021813	ENSPMRG00000021810	MAMLD1 (ENSPMRG00000021789)	MTM1 (ENSPMRG00000021760)	MTMR1 (ENSPMRG00000021744)	ENSPMRG00000021736	CD99L2 (ENSPMRG00000019965)	HMGB3 (ENSPMRG00000019958)	ENSPMRG00000019953	GPR50 (ENSPMRG00000019946)	ENSPMRG00000019932
Argentine black and white tegu	MODERN SPECIES	98				BRS3 (ENSSMRG00000017738)	PABIR2 (ENSSMRG00000017739)	HPRT1 (ENSSMRG00000017748)	PHF6 (ENSSMRG00000017750)	ENSSMRG00000017753	ENSSMRG00000017756	MCF2 (ENSSMRG00000017766)	ATP11C (ENSSMRG00000018169)	SLITRK4 (ENSSMRG00000018170)	SLITRK2 (ENSSMRG00000018175)	ENSSMRG00000018176	SEC22B (ENSSMRG00000018177)	FMR1 (ENSSMRG00000018178) ##22	AFF2 (ENSSMRG00000018180)	IDS (ENSSMRG00000018182)	TMEM185A (ENSSMRG00000018183)	ENSSMRG00000018184	MAMLD1 (ENSSMRG00000018185)	MTM1 (ENSSMRG00000018186)	MTMR1 (ENSSMRG00000018187)	CD99L2 (ENSSMRG00000018662)	HMGB3 (ENSSMRG00000018665)	GPR50 (ENSSMRG00000018666)	VMA21 (ENSSMRG00000018667)
Toxicofera	ANCESTRAL SPECIES	17	ENSGT00530000063353.b	ENSGT01070000253816.a.b	ENSGT00940000158723	ENSGT00940000153425	ENSGT00940000163390	ENSGT00940000160788	ENSGT00940000162313.g	ENSGT00940000159516.p	ENSGT00960000187127.c	ENSGT00940000159516.o	ENSGT00940000156974	ENSGT00940000158878	ENSGT00940000162359	ENSGT00940000160971	ENSGT00940000161248	ENSGT00950000183189.a.b.b ##22	ENSGT00950000182974.a.a.a.a	ENSGT00940000156803	ENSGT00940000158388	ENSGT00940000157452	ENSGT00390000012182	ENSGT00730000111366	ENSGT00940000157029	ENSGT00940000153669.b	ENSGT00940000154344.a	ENSGT00940000153299.d	ENSGT00940000153299.c.a	ENSGT00940000160515	ENSGT00390000017980	ENSGT00940000164304	ENSGT00940000159451
Elapidae	ANCESTRAL SPECIES	14	ENSGT00390000009902	ENSGT00530000063353.b	ENSGT01070000253816.a.b	ENSGT00940000158723	ENSGT00940000153425	ENSGT00940000163390	ENSGT00940000160788	ENSGT00940000162313.g	ENSGT00940000159516.p.a	ENSGT00940000159516.o	ENSGT00940000156974	ENSGT00940000158878	ENSGT00940000162359	ENSGT00940000160971	ENSGT00940000161248	ENSGT00950000183189.a.b.b ##22	ENSGT00950000182974.a.a.a.a.j	ENSGT00950000182974.a.a.a.a.i	ENSGT00940000156803	ENSGT00940000158388	ENSGT00940000157452	ENSGT00390000012182	ENSGT00730000111366	ENSGT00940000157029	ENSGT00940000153669.b	ENSGT00940000154344.a	ENSGT00940000153299.d	ENSGT00390000017980	ENSGT00940000164304	ENSGT00940000159451	ENSGT01050000245018
Elapidae_a	ANCESTRAL SPECIES	46	ENSGT00390000009902	ENSGT00530000063353.b	ENSGT00990000212640	ENSGT00940000158723	ENSGT00940000153425	ENSGT00940000163390	ENSGT00940000160788	ENSGT00940000162313.g	ENSGT00940000159516.p.a	ENSGT00940000159516.o	ENSGT00940000156974	ENSGT00940000158878	ENSGT00940000162359	ENSGT00940000160971	ENSGT00940000161248	ENSGT00950000183189.a.b.b ##22	ENSGT00950000182974.a.a.a.a.j	ENSGT00950000182974.a.a.a.a.i	ENSGT00940000156803	ENSGT00940000158388	ENSGT00940000157452	ENSGT00390000012182
Acanthophiinae	ANCESTRAL SPECIES	45	ENSGT00390000009902	ENSGT00530000063353.b	ENSGT00990000212640	ENSGT00940000158723	ENSGT00940000153425	ENSGT00940000163390	ENSGT00940000160788	ENSGT00940000162313.g	ENSGT00940000159516.p.a	ENSGT00940000159516.o	ENSGT00940000156974	ENSGT00940000158878	ENSGT00940000162359	ENSGT00940000160971	ENSGT00940000161248	ENSGT00950000183189.a.b.b ##22	ENSGT00950000182974.a.a.a.a.j	ENSGT00950000182974.a.a.a.a.i	ENSGT00940000156803	ENSGT00940000158388	ENSGT00940000157452	ENSGT00390000012182
Mainland tiger snake	MODERN SPECIES	195															SLITRK4 (ENSNSUG00000006482)	FMR1 (ENSNSUG00000006500) ##22	AFF2 (ENSNSUG00000010143)	IDS (ENSNSUG00000010146)	ENSNSUG00000010218	ENSNSUG00000010219	ENSNSUG00000010228
Eastern brown snake	MODERN SPECIES	86	HTATSF1 (ENSPTXG00000013410)	VGLL1 (ENSPTXG00000013411)	ENSPTXG00000013412	ARHGEF6 (ENSPTXG00000013413)	ENSPTXG00000013414	ENSPTXG00000013416	ZIC3 (ENSPTXG00000013418)	FGF13 (ENSPTXG00000013419)	ENSPTXG00000013420	ENSPTXG00000010995	MCF2 (ENSPTXG00000010997)	ATP11C (ENSPTXG00000011018)	SOX3 (ENSPTXG00000011083)	SLITRK4 (ENSPTXG00000011084)	SLITRK2 (ENSPTXG00000011085)	FMR1 (ENSPTXG00000011086) ##22	ENSPTXG00000011087	ENSPTXG00000011088	IDS (ENSPTXG00000011089)	TMEM185A (ENSPTXG00000011136)	ENSPTXG00000011139	ENSPTXG00000011142
Blue-lipped sea krait	MODERN SPECIES	299																FMR1 (ENSLLTG00000004534) ##22
Indian cobra	MODERN SPECIES	13	BRS3 (ENSNNAG00000018005)	HTATSF1 (ENSNNAG00000017993)	VGLL1 (ENSNNAG00000017986)	CD40LG (ENSNNAG00000017980)	ARHGEF6 (ENSNNAG00000017970)	ENSNNAG00000017958	ENSNNAG00000017951	ZIC3 (ENSNNAG00000017947)	FGF13 (ENSNNAG00000017944)	ENSNNAG00000017942	ENSNNAG00000017941	ENSNNAG00000017938	ENSNNAG00000017937	ATP11C (ENSNNAG00000017854)	SLITRK2 (ENSNNAG00000017823)	FMR1 (ENSNNAG00000017819) ##22	ENSNNAG00000017813	IDS (ENSNNAG00000017800)	TMEM185A (ENSNNAG00000017798)	ENSNNAG00000017778	ENSNNAG00000017773	MAMLD1 (ENSNNAG00000017769)	MTM1 (ENSNNAG00000017766)	MTMR1 (ENSNNAG00000017761)	CD99L2 (ENSNNAG00000017757)	HMGB3 (ENSNNAG00000017752)	VMA21 (ENSNNAG00000017750)	ENY2 (ENSNNAG00000017749)	ENSNNAG00000017746	TBC1D8B (ENSNNAG00000017704)	RNF128 (ENSNNAG00000017698)
Lizard	MODERN SPECIES	51																ENSACAG00000007899 ##22
tuatara	MODERN SPECIES	1491	SLC9A6 (ENSSPUG00000014846)	FHL1 (ENSSPUG00000014828)	MAP7D3 (ENSSPUG00000014797)	BRS3 (ENSSPUG00000014779)	HTATSF1 (ENSSPUG00000014767)	CD40LG (ENSSPUG00000014758)	ARHGEF6 (ENSSPUG00000014711)	ENSSPUG00000014648	ENSSPUG00000014620	FGF13 (ENSSPUG00000014595)	F9 (ENSSPUG00000014572)	MCF2 (ENSSPUG00000014316)	ATP11C (ENSSPUG00000014232)	SOX3 (ENSSPUG00000014219)	ENSSPUG00000014199	FMR1 (ENSSPUG00000014177) ##22	IDS (ENSSPUG00000014056)	ENSSPUG00000014048	ENSSPUG00000014041	ENSSPUG00000014033	ENSSPUG00000014026	MAMLD1 (ENSSPUG00000014011)	MTM1 (ENSSPUG00000013987)	MTMR1 (ENSSPUG00000013970)	CD99L2 (ENSSPUG00000013859)	HMGB3 (ENSSPUG00000013819)	GPR50 (ENSSPUG00000013815)	VMA21 (ENSSPUG00000013810)	TBC1D8B (ENSSPUG00000013784)	RNF128 (ENSSPUG00000013648)	RADX (ENSSPUG00000013433)
Archelosauria	ANCESTRAL SPECIES	24	ENSGT00390000009902	ENSGT00530000063353.b	ENSGT01100000263502.A.a.a.a.a	ENSGT01070000253816.a.b	ENSGT00940000158723	ENSGT00940000153425	ENSGT00940000163390	ENSGT00940000160788	ENSGT00940000162313	ENSGT00940000159516	ENSGT00940000156974	ENSGT00940000158878	ENSGT00940000162359	ENSGT00940000160971	ENSGT00940000161248	ENSGT00950000183189.a.b.b ##22	ENSGT00950000182974.a.a.a.a	ENSGT00940000156803	ENSGT00940000158388	ENSGT00940000157452	ENSGT00390000012182	ENSGT00730000111366	ENSGT00940000157029	ENSGT00940000153669.b	ENSGT00940000154344.a	ENSGT00940000153299.d	ENSGT00940000160515	ENSGT00390000017980	ENSGT00940000164304	ENSGT01050000245018	ENSGT00940000159451
Cryptodira	ANCESTRAL SPECIES	29	ENSGT00390000009902	ENSGT00530000063353.b	ENSGT01100000263502.A.a.a.a.a	ENSGT01070000253816.a.b	ENSGT00940000158723	ENSGT00940000153425	ENSGT00940000163390	ENSGT00940000160788	ENSGT00940000162313	ENSGT00940000159516	ENSGT00940000156974	ENSGT00940000158878	ENSGT00940000162359	ENSGT00940000160971	ENSGT00940000161248	ENSGT00950000183189.a.b.b ##22	ENSGT00950000182974.a.a.a.a	ENSGT00940000156803	ENSGT00940000158388	ENSGT00940000157452	ENSGT00390000012182	ENSGT00730000111366	ENSGT00940000157029	ENSGT00940000153669.b	ENSGT00940000154344.a	ENSGT00940000153299.d	ENSGT00940000160515	ENSGT00390000017980	ENSGT00940000164304	ENSGT01050000245018	ENSGT00940000159451
Testudinoidea	ANCESTRAL SPECIES	24	ENSGT00530000063353.b	ENSGT01100000263502.A.a.a.a.a	ENSGT01070000253816.a.b	ENSGT00940000158723	ENSGT00940000153425	ENSGT00940000163390.a	ENSGT00940000165216	ENSGT00940000160788	ENSGT00940000162313	ENSGT00940000159516	ENSGT00940000156974	ENSGT00940000158878	ENSGT00940000162359	ENSGT00940000160971	ENSGT00940000161248	ENSGT00950000183189.a.b.b ##22	ENSGT00950000182974.a.a.a.a	ENSGT00940000156803	ENSGT00940000158388	ENSGT00940000157452.r	ENSGT00940000157452.q	ENSGT00390000012182	ENSGT00730000111366	ENSGT00940000157029	ENSGT00940000153669.b	ENSGT00940000154344.a	ENSGT00940000153299.d	ENSGT00940000160515	ENSGT00390000017980	ENSGT00940000164304	ENSGT00940000159451
Emydidae	ANCESTRAL SPECIES	32	ENSGT01100000263502.A.a.a.a.a	ENSGT01070000253816.a.b	ENSGT00940000158723	ENSGT00940000153425	ENSGT00940000163390.a	ENSGT00940000165216	ENSGT00940000160788	ENSGT00940000163347	ENSGT00940000162313	ENSGT00940000159516.r	ENSGT00940000156974	ENSGT00940000158878	ENSGT00940000162359	ENSGT00940000160971	ENSGT00940000161248	ENSGT00950000183189.a.b.b ##22	ENSGT00950000182974.a.a.a.a	ENSGT00940000156803	ENSGT00940000158388	ENSGT00940000157452.r	ENSGT00940000157452.q	ENSGT00390000012182	ENSGT00730000111366	ENSGT00940000157029	ENSGT00940000153669.b	ENSGT00940000154344.a	ENSGT00940000153299.d	ENSGT00940000160515	ENSGT00390000017980	ENSGT00940000164304	ENSGT00940000159451
Three-toed box turtle	MODERN SPECIES	61	ENSTMTG00000023196	CD40LG (ENSTMTG00000023197)	ARHGEF6 (ENSTMTG00000023198)	ENSTMTG00000023199	ENSTMTG00000023201	ENSTMTG00000023202	ENSTMTG00000023203	ZIC3 (ENSTMTG00000023204)	FGF13 (ENSTMTG00000023205)	ENSTMTG00000023206	MCF2 (ENSTMTG00000023207)	ATP11C (ENSTMTG00000023208)	SOX3 (ENSTMTG00000023209)	SLITRK4 (ENSTMTG00000023210)	SLITRK2 (ENSTMTG00000023211)	FMR1 (ENSTMTG00000023213) ##22	ENSTMTG00000023214	ENSTMTG00000023215	IDS (ENSTMTG00000023216)	TMEM185A (ENSTMTG00000023217)	ENSTMTG00000023218	ENSTMTG00000023219	MAMLD1 (ENSTMTG00000023220)	MTM1 (ENSTMTG00000023221)	MTMR1 (ENSTMTG00000023222)	CD99L2 (ENSTMTG00000023223)	HMGB3 (ENSTMTG00000023224)	GPR50 (ENSTMTG00000023225)	VMA21 (ENSTMTG00000023226)	TBC1D8B (ENSTMTG00000023227)	ENSTMTG00000023228
painted turtle	MODERN SPECIES	715	GPR161 (ENSCPBG00000020904)	ENSCPBG00000020902	CPOX (ENSCPBG00000020901)	ENSCPBG00000020900	CLHC1 (ENSCPBG00000020899)	ENSCPBG00000020897	MTIF2 (ENSCPBG00000020894)	ENSCPBG00000020887	ENSCPBG00000020884	CFAP36 (ENSCPBG00000020882)	ENSCPBG00000020875	PNPT1 (ENSCPBG00000020856)	SLITRK4 (ENSCPBG00000020851)	SLITRK2 (ENSCPBG00000020846)	ENSCPBG00000020842	FMR1 (ENSCPBG00000020840) ##22	AFF2 (ENSCPBG00000020831)	IDS (ENSCPBG00000020828)	TMEM185A (ENSCPBG00000020826)	ENSCPBG00000020825	ENSCPBG00000020824	ENSCPBG00000020822	MAMLD1 (ENSCPBG00000020820)	MTM1 (ENSCPBG00000020815)	MTMR1 (ENSCPBG00000020808)	CD99L2 (ENSCPBG00000020801)	HMGB3 (ENSCPBG00000020797)	GPR50 (ENSCPBG00000020796)	VMA21 (ENSCPBG00000020793)	ENSCPBG00000020784	ENSCPBG00000020782
Testudinidae	ANCESTRAL SPECIES	21	ENSGT00390000009902	ENSGT00530000063353.b	ENSGT01070000253816.a.b	ENSGT00940000158723	ENSGT00940000153425	ENSGT00940000163390.a	ENSGT00940000165216	ENSGT00940000160788	ENSGT00940000162313	ENSGT00940000159516	ENSGT00940000156974	ENSGT00940000158878	ENSGT00940000162359	ENSGT00940000160971	ENSGT00940000161248	ENSGT00950000183189.a.b.b ##22	ENSGT00950000182974.a.a.a.a	ENSGT00940000156803	ENSGT00940000158388	ENSGT00940000157452.r	ENSGT00940000157452.q	ENSGT00390000012182	ENSGT00730000111366	ENSGT00940000157029	ENSGT00940000153669.b	ENSGT00940000154344.a	ENSGT00940000153299.d	ENSGT00940000160515	ENSGT00390000017980	ENSGT00940000159451	ENSGT01050000245018
Goode s thornscrub tortoise	MODERN SPECIES	23	VGLL1 (ENSGEVG00005017059)	CD40LG (ENSGEVG00005017037)	ARHGEF6 (ENSGEVG00005016956)	ENSGEVG00005016908	ENSGEVG00005016877	ENSGEVG00005016815	ENSGEVG00005016761	ZIC3 (ENSGEVG00005016724)	FGF13 (ENSGEVG00005016687)	F9 (ENSGEVG00005016537)	MCF2 (ENSGEVG00005016390)	ATP11C (ENSGEVG00005013525)	SOX3 (ENSGEVG00005012862)	SLITRK4 (ENSGEVG00005012843)	SLITRK2 (ENSGEVG00005012826)	FMR1 (ENSGEVG00005012753) ##22	ENSGEVG00005012672	ENSGEVG00005012369	IDS (ENSGEVG00005012312)	ENSGEVG00005012285	TMEM185A (ENSGEVG00005012246)	ENSGEVG00005012198	ENSGEVG00005012176	MAMLD1 (ENSGEVG00005012154)	MTM1 (ENSGEVG00005012134)	MTMR1 (ENSGEVG00005012057)	CD99L2 (ENSGEVG00005011928)	HMGB3 (ENSGEVG00005011874)	GPR50 (ENSGEVG00005011833)	VMA21 (ENSGEVG00005011758)	ENSGEVG00005011736
Chinese turtle	MODERN SPECIES	2217															SLITRK2 (ENSPSIG00000000218)	FMR1 (ENSPSIG00000009079) ##22	AFF2 (ENSPSIG00000010309)	IDS (ENSPSIG00000012376)	TMEM185A (ENSPSIG00000012413)	ENSPSIG00000013231	MAMLD1 (ENSPSIG00000013291)	MTM1 (ENSPSIG00000013301)	MTMR1 (ENSPSIG00000014492)	CD99L2 (ENSPSIG00000015880)	HMGB3 (ENSPSIG00000015958)	ENSPSIG00000000237	VMA21 (ENSPSIG00000016220)	ENSPSIG00000016231	TBC1D8B (ENSPSIG00000016956)
Archosauria	ANCESTRAL SPECIES	15	ENSGT00390000015219	ENSGT00940000161737	ENSGT00530000063786.b	ENSGT00940000161221	ENSGT00940000160785	ENSGT00940000161952	ENSGT00940000160946	ENSGT00730000112379	ENSGT00940000155374	ENSGT00940000161201	ENSGT00940000159444	ENSGT00940000164188	ENSGT00940000162359	ENSGT00940000160971	ENSGT00940000161248	ENSGT00950000183189.a.b.b ##22	ENSGT00950000182974.a.a.a.a	ENSGT00940000156803	ENSGT00940000158388	ENSGT00940000157452	ENSGT00390000012182	ENSGT00730000111366	ENSGT00940000157029	ENSGT00940000153669.b	ENSGT00940000154344.a	ENSGT00940000153299.d	ENSGT00940000160515	ENSGT00390000017980	ENSGT00940000164304	ENSGT01050000245018	ENSGT00940000159451
Aves	ANCESTRAL SPECIES	23	ENSGT00390000015219	ENSGT00940000161737	ENSGT00530000063786.b	ENSGT00940000161221	ENSGT00940000160785	ENSGT00940000161952	ENSGT00940000160946	ENSGT00730000112379	ENSGT00940000155374	ENSGT00940000161201	ENSGT00940000159444	ENSGT00940000164188	ENSGT00940000162359	ENSGT00940000160971	ENSGT00940000161248	ENSGT00950000183189.a.b.b ##22	ENSGT00950000182974.a.a.a.a	ENSGT00940000156803	ENSGT00940000158388	ENSGT00940000157452	ENSGT00390000012182	ENSGT00730000111366	ENSGT00940000157029	ENSGT00940000153669.b	ENSGT00940000154344.a	ENSGT00940000153299.d	ENSGT00940000160515	ENSGT00390000017980	ENSGT00940000164304	ENSGT01050000245018	ENSGT00940000159451
African ostrich	MODERN SPECIES	71																FMR1 (ENSSCUG00000000120) ##22
Neognathae	ANCESTRAL SPECIES	22	ENSGT00390000015219	ENSGT00940000161737	ENSGT00530000063786.b	ENSGT00940000161221	ENSGT00940000160785	ENSGT00940000161952	ENSGT00940000160946	ENSGT00730000112379	ENSGT00940000155374	ENSGT00940000161201	ENSGT00940000159444	ENSGT00940000164188	ENSGT00940000162359	ENSGT00940000160971	ENSGT00940000161248	ENSGT00950000183189.a.b.b ##22	ENSGT00950000182974.a.a.a.a	ENSGT00940000156803	ENSGT00940000158388	ENSGT00940000157452.s.b	ENSGT00390000012182	ENSGT00730000111366	ENSGT00940000157029	ENSGT00940000153669.b	ENSGT00940000154344.a	ENSGT00940000153299.d	ENSGT00940000160515	ENSGT00390000017980	ENSGT00940000164304	ENSGT01050000245018	ENSGT00940000159451
Neognathae_b	ANCESTRAL SPECIES		ENSGT00390000015219	ENSGT00940000161737	ENSGT00530000063786.b	ENSGT00940000161221	ENSGT00940000160785	ENSGT00940000161952	ENSGT00940000160946	ENSGT00730000112379	ENSGT00940000155374	ENSGT00940000161201	ENSGT00940000159444	ENSGT00940000164188	ENSGT00940000162359	ENSGT00940000160971	ENSGT00940000161248	ENSGT00950000183189.a.b.b ##22	ENSGT00950000182974.a.a.a.a	ENSGT00940000156803	ENSGT00940000158388	ENSGT00940000157452.s.b.b	ENSGT00390000012182	ENSGT00730000111366	ENSGT00940000157029	ENSGT00940000153669.b	ENSGT00940000154344.a	ENSGT00940000153299.d	ENSGT00940000160515	ENSGT00390000017980	ENSGT00940000164304	ENSGT01050000245018	ENSGT00940000159451
Neognathae_c	ANCESTRAL SPECIES	29	ENSGT00950000183035.a.a	ENSGT00390000015219	ENSGT00940000161737	ENSGT00530000063786.b	ENSGT00940000161221	ENSGT00940000160785	ENSGT00940000160946	ENSGT00730000112379	ENSGT00940000155374	ENSGT00940000161201	ENSGT00940000159444	ENSGT00940000164188	ENSGT00940000162359	ENSGT00940000160971	ENSGT00940000161248	ENSGT00950000183189.a.b.b ##22	ENSGT00950000182974.a.a.a.a	ENSGT00940000156803	ENSGT00940000158388	ENSGT00940000157452.s.b.b	ENSGT00390000012182	ENSGT00730000111366	ENSGT00940000157029	ENSGT00940000153669.b	ENSGT00940000154344.a	ENSGT00940000153299.d	ENSGT00940000160515	ENSGT00390000017980	ENSGT00940000164304	ENSGT01050000245018	ENSGT00940000159451
Golden eagle	MODERN SPECIES	13	DNAAF6 (ENSACCG00020015319)	NUP62 (ENSACCG00020015364)	RBM41 (ENSACCG00020015416)	ENSACCG00020015440	CLDN2 (ENSACCG00020015455)	PRRG3 (ENSACCG00020015464)	ENSACCG00020015477	ENSACCG00020015491	CNGA2 (ENSACCG00020015500)	GABRE (ENSACCG00020015516)	GABRA3 (ENSACCG00020015527)	ENSACCG00020015541	SLITRK4 (ENSACCG00020015580)	SLITRK2 (ENSACCG00020015588)	ENSACCG00020015596	FMR1 (ENSACCG00020015619) ##22	AFF2 (ENSACCG00020015651)	IDS (ENSACCG00020015672)	TMEM185A (ENSACCG00020015687)	ENSACCG00020015697	ENSACCG00020015706	MAMLD1 (ENSACCG00020015719)	MTM1 (ENSACCG00020015727)	MTMR1 (ENSACCG00020015918)	CD99L2 (ENSACCG00020016061)	HMGB3 (ENSACCG00020016077)	GPR50 (ENSACCG00020016089)	VMA21 (ENSACCG00020016099)	ENSACCG00020009464	TBC1D8B (ENSACCG00020009498)	RNF128 (ENSACCG00020009523)
Kakapo	MODERN SPECIES	1	FRMPD3 (ENSSHBG00005000729)	DNAAF6 (ENSSHBG00005000773)	NUP62 (ENSSHBG00005005448)	RBM41 (ENSSHBG00005005512)	CLDN2 (ENSSHBG00005005532)	PRRG3 (ENSSHBG00005005555)	ENSSHBG00005005604	CNGA2 (ENSSHBG00005005650)	ENSSHBG00005005676	GABRE (ENSSHBG00005005710)	GABRA3 (ENSSHBG00005005735)	ENSSHBG00005005759	SOX3 (ENSSHBG00005005768)	SLITRK4 (ENSSHBG00005005808)	SLITRK2 (ENSSHBG00005005894)	FMR1 (ENSSHBG00005005901) ##22	AFF2 (ENSSHBG00005005977)	IDS (ENSSHBG00005006058)	TMEM185A (ENSSHBG00005006079)	ENSSHBG00005006102	MAMLD1 (ENSSHBG00005006121)	MTM1 (ENSSHBG00005006150)	MTMR1 (ENSSHBG00005006535)	CD99L2 (ENSSHBG00005010859)	ENSSHBG00005010875	HMGB3 (ENSSHBG00005010908)	ENSSHBG00005010970	ENSSHBG00005011027	TBC1D8B (ENSSHBG00005011055)	RNF128 (ENSSHBG00005011195)	RADX (ENSSHBG00005011738)
Passeriformes	ANCESTRAL SPECIES	30	ENSGT00950000183168.C	ENSGT00940000159334	ENSGT00940000153609.a	ENSGT00940000154651	ENSGT00390000003197	ENSGT00390000006492	ENSGT00940000159565	ENSGT00960000188821	ENSGT00940000159625	ENSGT01050000244937.a.b.a	ENSGT00940000159971	ENSGT00940000160039	ENSGT00940000160971	ENSGT00940000161248	ENSGT00940000162226.e.a	ENSGT00950000183189.a.b.b ##22	ENSGT00950000182974.a.a.a.a	ENSGT00940000156803	ENSGT00940000158388	ENSGT00390000012182	ENSGT00730000111366	ENSGT00940000157029	ENSGT00940000153669.b	ENSGT00940000154344.a	ENSGT00940000153299.d	ENSGT00940000160515	ENSGT00390000017980	ENSGT00940000164304	ENSGT00940000159451	ENSGT00940000158347
Great tit	MODERN SPECIES	24	SNX12 (ENSPMJG00000011466)	SLC7A3 (ENSPMJG00000011465)	ENSPMJG00000011464	TEX11 (ENSPMJG00000011463)	DLG3 (ENSPMJG00000011462)	GDPD2 (ENSPMJG00000011461)	HTR2C (ENSPMJG00000011458)	ENSPMJG00000011457	LRCH2 (ENSPMJG00000011456)	ENSPMJG00000011455	SLITRK4 (ENSPMJG00000011447)	SLITRK2 (ENSPMJG00000011443)	TSSK2 (ENSPMJG00000011441)	ENSPMJG00000011440	ENSPMJG00000011439	FMR1 (ENSPMJG00000011437) ##22	AFF2 (ENSPMJG00000011434)	IDS (ENSPMJG00000011432)	TMEM185A (ENSPMJG00000011431)	ENSPMJG00000011430	ENSPMJG00000011429	ENSPMJG00000011428	MAMLD1 (ENSPMJG00000011427)	MTM1 (ENSPMJG00000011426)	MTMR1 (ENSPMJG00000011425)	CD99L2 (ENSPMJG00000011424)	GPR50 (ENSPMJG00000011423)	HMGB3 (ENSPMJG00000011422)	VMA21 (ENSPMJG00000011421)	ENSPMJG00000011420	TBC1D8B (ENSPMJG00000011419)
Passeriformes_d	ANCESTRAL SPECIES	31	ENSGT00950000183168.C	ENSGT00940000159334	ENSGT00940000153609.a	ENSGT00940000154651	ENSGT00390000003197	ENSGT00390000006492	ENSGT00940000159565	ENSGT00960000188821	ENSGT00940000159625	ENSGT01050000244937.a.b.a	ENSGT00940000159971	ENSGT00940000160039	ENSGT00940000160971	ENSGT00940000161248	ENSGT00940000162226.e.a	ENSGT00950000183189.a.b.b ##22	ENSGT00950000182974.a.a.a.a	ENSGT00940000156803	ENSGT00940000158388	ENSGT00390000012182	ENSGT00730000111366	ENSGT00940000157029	ENSGT00940000153669.b	ENSGT00940000154344.a	ENSGT00940000153299.d	ENSGT00940000160515	ENSGT00390000017980	ENSGT00940000164304	ENSGT00940000159451	ENSGT00940000158347
Flycatcher	MODERN SPECIES	23	TEX11 (ENSFALG00000011937)	ENSFALG00000025845	ENSFALG00000025914	ENSFALG00000026974	DLG3 (ENSFALG00000011970)	GDPD2 (ENSFALG00000012033)	HTR2C (ENSFALG00000026997)	ENSFALG00000023739	LRCH2 (ENSFALG00000012073)	ENSFALG00000012078	ENSFALG00000028898	ENSFALG00000026370	ENSFALG00000015204	SLITRK2 (ENSFALG00000015217)	ENSFALG00000015228	FMR1 (ENSFALG00000012085) ##22	AFF2 (ENSFALG00000012089)	IDS (ENSFALG00000012098)	ENSFALG00000012106	ENSFALG00000012109	MAMLD1 (ENSFALG00000012116)	MTM1 (ENSFALG00000012122)	ENSFALG00000012126	ENSFALG00000023114	CD99L2 (ENSFALG00000012132)	HMGB3 (ENSFALG00000024484)	ENSFALG00000012147	VMA21 (ENSFALG00000012151)	ENSFALG00000000157	AMMECR1 (ENSFALG00000026986)	TMEM164 (ENSFALG00000000168)
Passeriformes_g	ANCESTRAL SPECIES	23	ENSGT00950000183168.C	ENSGT00940000159334	ENSGT00940000153609.a	ENSGT00940000154651	ENSGT00390000003197	ENSGT00390000006492	ENSGT00940000159565	ENSGT00960000188821	ENSGT00940000159625	ENSGT01050000244937.a.b.a	ENSGT00940000159971	ENSGT00940000160039	ENSGT00940000160971	ENSGT00940000161248	ENSGT00940000162226.e.a	ENSGT00950000183189.a.b.b ##22	ENSGT00950000182974.a.a.a.a	ENSGT00940000156803	ENSGT00940000158388	ENSGT00390000012182	ENSGT00730000111366	ENSGT00940000157029	ENSGT00940000153669.b	ENSGT00940000154344.a	ENSGT00940000153299.d	ENSGT00940000160515	ENSGT00390000017980	ENSGT00940000164304	ENSGT00940000159451	ENSGT00940000158347	ENSGT00950000182988.a.b.b.b
Medium ground finch	MODERN SPECIES	17	ENSGFOG00000000638	ENSGFOG00000000633	FOXO4 (ENSGFOG00000000630)	SNX12 (ENSGFOG00000000626)	SLC7A3 (ENSGFOG00000000616)	ENSGFOG00000000613	ENSGFOG00000000608	DLG3 (ENSGFOG00000014673)	GDPD2 (ENSGFOG00000014668)	HTR2C (ENSGFOG00000014665)	ENSGFOG00000014656	LRCH2 (ENSGFOG00000014648)	SLITRK4 (ENSGFOG00000014645)	SLITRK2 (ENSGFOG00000014641)	TSSK1B (ENSGFOG00000014639)	FMR1 (ENSGFOG00000014634) ##22	AFF2 (ENSGFOG00000014623)	IDS (ENSGFOG00000014621)	TMEM185A (ENSGFOG00000014619)	ENSGFOG00000014616	MAMLD1 (ENSGFOG00000014615)	MTM1 (ENSGFOG00000014612)	MTMR1 (ENSGFOG00000014608)	CD99L2 (ENSGFOG00000014604)	HMGB3 (ENSGFOG00000014601)	ENSGFOG00000014600	VMA21 (ENSGFOG00000014598)	TBC1D8B (ENSGFOG00000014590)	RNF128 (ENSGFOG00000014578)	PAK3 (ENSGFOG00000014570)	CHRDL1 (ENSGFOG00000014565)
Passeroidea	ANCESTRAL SPECIES	25	ENSGT00950000183168.C	ENSGT00940000159334	ENSGT00940000153609.a	ENSGT00940000154651	ENSGT00390000003197	ENSGT00390000006492	ENSGT00940000159565	ENSGT00960000188821	ENSGT00940000159625	ENSGT01050000244937.a.b.a	ENSGT00940000159971	ENSGT00940000160039	ENSGT00940000160971	ENSGT00940000161248	ENSGT00940000162226.e.a	ENSGT00950000183189.a.b.b ##22	ENSGT00950000182974.a.a.a.a	ENSGT00940000156803	ENSGT00940000158388	ENSGT00390000012182	ENSGT00730000111366	ENSGT00940000157029	ENSGT00940000153669.b	ENSGT00940000154344.a	ENSGT00940000153299.d	ENSGT00940000160515	ENSGT00390000017980	ENSGT00940000164304	ENSGT00940000159451	ENSGT00940000158347	ENSGT00950000182988.a.b.b.b
Zebra finch	MODERN SPECIES	26	CLIC2 (ENSTGUG00000004925)	ENSTGUG00000004918	ENSTGUG00000004916	ENSTGUG00000004878	SHROOM4 (ENSTGUG00000020543)	BMP15 (ENSTGUG00000004869)	PHKA1 (ENSTGUG00000004827)	HDAC8 (ENSTGUG00000004801)	RPS4X (ENSTGUG00000022503)	ENSTGUG00000019393	ENSTGUG00000022518	ENSTGUG00000004773	SLITRK4 (ENSTGUG00000004770)	SLITRK2 (ENSTGUG00000004763)	TSSK2 (ENSTGUG00000004761)	FMR1 (ENSTGUG00000004735) ##22	AFF2 (ENSTGUG00000004690)	IDS (ENSTGUG00000004678)	ENSTGUG00000004664	TMEM185A (ENSTGUG00000004667)	MAMLD1 (ENSTGUG00000004663)	MTM1 (ENSTGUG00000004636)	MTMR1 (ENSTGUG00000004586)	CD99L2 (ENSTGUG00000019800)	HMGB3 (ENSTGUG00000022829)	GPR50 (ENSTGUG00000004565)	ENSTGUG00000004465	TBC1D8B (ENSTGUG00000004500)	RNF128 (ENSTGUG00000004446)	CHRDL1 (ENSTGUG00000004370)	ENSTGUG00000004384
Common canary	MODERN SPECIES	13	ENSSCAG00000016264	ATP7A (ENSSCAG00000016266)	ENSSCAG00000016273	AMOT (ENSSCAG00000016276)	TRPC5 (ENSSCAG00000016285)	ENSSCAG00000016290	DCX (ENSSCAG00000016293)	CAPN6 (ENSSCAG00000016299)	ENSSCAG00000016310	HTR2C (ENSSCAG00000016313)	ENSSCAG00000016317	LRCH2 (ENSSCAG00000016321)	SLITRK4 (ENSSCAG00000016328)	SLITRK2 (ENSSCAG00000016333)	TSSK2 (ENSSCAG00000016335)	FMR1 (ENSSCAG00000016447) ##22	AFF2 (ENSSCAG00000016564)	IDS (ENSSCAG00000016567)	TMEM185A (ENSSCAG00000016568)	ENSSCAG00000016569	MAMLD1 (ENSSCAG00000016574)	MTM1 (ENSSCAG00000016583)	MTMR1 (ENSSCAG00000016596)	CD99L2 (ENSSCAG00000016606)	ENSSCAG00000016612	HMGB3 (ENSSCAG00000016615)	ENSSCAG00000016620	VMA21 (ENSSCAG00000016624)	ENSSCAG00000016626	TBC1D8B (ENSSCAG00000016629)	RNF128 (ENSSCAG00000016633)
Galloanserae	ANCESTRAL SPECIES	21	ENSGT00390000015219	ENSGT00940000161737	ENSGT00530000063786.b	ENSGT00940000161221	ENSGT00940000160785	ENSGT00940000161952	ENSGT00940000160946	ENSGT00730000112379	ENSGT00940000155374	ENSGT00940000161201	ENSGT00940000159444	ENSGT00940000164188	ENSGT00940000162359	ENSGT00940000160971	ENSGT00940000161248	ENSGT00950000183189.a.b.b ##22	ENSGT00950000182974.a.a.a.a	ENSGT00940000156803	ENSGT00940000158388	ENSGT00390000012182	ENSGT00730000111366	ENSGT00940000157029	ENSGT00940000153669.b	ENSGT00940000154344.a	ENSGT00940000153299.d	ENSGT00940000160515	ENSGT00390000017980	ENSGT00940000164304	ENSGT00940000159451	ENSGT00940000158347	ENSGT00390000005094
Anatidae	ANCESTRAL SPECIES	24	ENSGT00940000161604	ENSGT00950000182803.B.d.a	ENSGT00950000183035.a.a	ENSGT00390000015219	ENSGT00940000161737	ENSGT00530000063786.b	ENSGT00940000161221	ENSGT00940000160785	ENSGT00940000160946	ENSGT00730000112379	ENSGT00940000155374	ENSGT00940000161201	ENSGT00940000159444	ENSGT00940000164188	ENSGT00940000161248	ENSGT00950000183189.a.b.b ##22	ENSGT00950000182974.a.a.a.a	ENSGT00940000156803	ENSGT00940000158388	ENSGT00390000012182	ENSGT00730000111366	ENSGT00940000157029	ENSGT00940000153669.b	ENSGT00940000154344.a	ENSGT00940000153299.d	ENSGT00940000160515	ENSGT00390000017980	ENSGT00940000164304	ENSGT00940000159451	ENSGT00940000158347	ENSGT00390000005094
Pink-footed goose	MODERN SPECIES	4	ENSABRG00000001064	ENSABRG00000001084	ENSABRG00000001094	DNAAF6 (ENSABRG00000001127)	NUP62 (ENSABRG00000001150)	RBM41 (ENSABRG00000001193)	MORC4 (ENSABRG00000001210)	CLDN2 (ENSABRG00000001305)	PRRG3 (ENSABRG00000001318)	ENSABRG00000001334	CNGA2 (ENSABRG00000001350)	GABRE (ENSABRG00000001367)	GABRA3 (ENSABRG00000001398)	ENSABRG00000001446	SLITRK2 (ENSABRG00000001893)	FMR1 (ENSABRG00000001945) ##22	AFF2 (ENSABRG00000002038)	IDS (ENSABRG00000002199)	TMEM185A (ENSABRG00000002271)	ENSABRG00000002293	MAMLD1 (ENSABRG00000002311)	MTM1 (ENSABRG00000002328)	ENSABRG00000002363	ENSABRG00000002407	CD99L2 (ENSABRG00000002432)	HMGB3 (ENSABRG00000002448)	GPR50 (ENSABRG00000002461)	VMA21 (ENSABRG00000002474)	ENSABRG00000002486	TBC1D8B (ENSABRG00000002519)	RNF128 (ENSABRG00000002583)
Duck	MODERN SPECIES	1	ENSAPLG00000013596	ENSAPLG00000013521	ENSAPLG00000013441	ENSAPLG00000023224	NSDHL (ENSAPLG00000013097)	ENSAPLG00000012906	ENSAPLG00000012884	VAMP7 (ENSAPLG00000012771)	POLR1D (ENSAPLG00000012757)	ENSAPLG00000012679	ENSAPLG00000020012	SPRY3 (ENSAPLG00000012493)	TMLHE (ENSAPLG00000012485)	ENSAPLG00000016900	SLITRK2 (ENSAPLG00000001736)	FMR1 (ENSAPLG00000003811) ##22	AFF2 (ENSAPLG00000003660)	IDS (ENSAPLG00000003521)	TMEM185A (ENSAPLG00000003446)	ENSAPLG00000003441	MAMLD1 (ENSAPLG00000003254)	MTM1 (ENSAPLG00000002352)	ENSAPLG00000000577	ENSAPLG00000030024	CD99L2 (ENSAPLG00000027711)	HMGB3 (ENSAPLG00000015880)	ENSAPLG00000001166	VMA21 (ENSAPLG00000025322)	ENSAPLG00000014933	TBC1D8B (ENSAPLG00000014354)	RNF128 (ENSAPLG00000014254)
Phasianidae	ANCESTRAL SPECIES	2	ENSGT00510000047351.b	ENSGT00390000011679	ENSGT00940000158467	ENSGT00940000157467	ENSGT00940000158122.e	ENSGT00940000155316	ENSGT00940000164636	ENSGT00940000156432.a	ENSGT00390000013075.b	ENSGT00940000156323.o.a	ENSGT00940000156323.o.b	ENSGT00530000063614.a.b	ENSGT00490000043413	ENSGT00940000155905.a	ENSGT00940000161248	ENSGT00950000183189.a.b.b ##22	ENSGT00950000182974.a.a.a.a	ENSGT00940000156803	ENSGT00940000158388	ENSGT00390000012182	ENSGT00730000111366	ENSGT00940000157029	ENSGT00940000153669.b	ENSGT00940000154344.a	ENSGT00940000153299.d	ENSGT00940000160515	ENSGT00390000017980	ENSGT00940000164304	ENSGT00940000159451	ENSGT00940000158347	ENSGT00390000005094
Japanese quail	MODERN SPECIES	22	RBM46 (ENSCJPG00005000468)	LRAT (ENSCJPG00005000455)	ENSCJPG00005000441	FGG (ENSCJPG00005000435)	ENSCJPG00005000432	FGB (ENSCJPG00005000428)	PLRG1 (ENSCJPG00005000424)	SFRP2 (ENSCJPG00005000412)	ENSCJPG00005000409	ENSCJPG00005000408	ENSCJPG00005000406	TMEM131L (ENSCJPG00005000378)	MND1 (ENSCJPG00005000370)	TRIM2 (ENSCJPG00005000363)	SLITRK2 (ENSCJPG00005000358)	FMR1 (ENSCJPG00005000330) ##22	AFF2 (ENSCJPG00005000286)	IDS (ENSCJPG00005000265)	TMEM185A (ENSCJPG00005000261)	ENSCJPG00005000258	MAMLD1 (ENSCJPG00005000249)	MTM1 (ENSCJPG00005000244)	MTMR1 (ENSCJPG00005000238)	CD99L2 (ENSCJPG00005000101)	HMGB3 (ENSCJPG00005000075)	GPR50 (ENSCJPG00005000069)	VMA21 (ENSCJPG00005000062)	ENSCJPG00005018843	TBC1D8B (ENSCJPG00005018842)	RNF128 (ENSCJPG00005018841)	ENSCJPG00005018840
Phasianidae_b	ANCESTRAL SPECIES	27	ENSGT00510000047351.b	ENSGT00390000011679	ENSGT00940000158467	ENSGT00940000157467	ENSGT00940000158122.e	ENSGT00940000155316	ENSGT00940000164636	ENSGT00940000156432.a	ENSGT00390000013075.b	ENSGT00940000156323.o.a	ENSGT00940000156323.o.b	ENSGT00530000063614.a.b	ENSGT00490000043413	ENSGT00940000155905.a	ENSGT00940000161248	ENSGT00950000183189.a.b.b ##22	ENSGT00390000007953	ENSGT00950000182974.a.a.a.a	ENSGT00940000156803	ENSGT00390000012182	ENSGT00940000158388	ENSGT00730000111366	ENSGT00940000157029	ENSGT00940000153669.b	ENSGT00940000154344.a	ENSGT00940000153299.d	ENSGT00940000160515	ENSGT00390000017980	ENSGT00940000164304	ENSGT00940000159451	ENSGT00940000158347
Chicken	MODERN SPECIES	33	FGG (ENSGALG00010014956)	FGA (ENSGALG00010014972)	FGB (ENSGALG00010014944)	PLRG1 (ENSGALG00010014918)	ENSGALG00010014890	SFRP2 (ENSGALG00010014880)	TLR2 (ENSGALG00010014865)	TLR2A (ENSGALG00010014793)	ENSGALG00010014753	TMEM131L (ENSGALG00010014284)	MND1 (ENSGALG00010014173)	TRIM2 (ENSGALG00010014102)	SLITRK2 (ENSGALG00010014077)	ENSGALG00010013973	ENSGALG00010013938	FMR1 (ENSGALG00010016449) ##22	FMR1NB (ENSGALG00010013923)	ENSGALG00010015912	AFF2 (ENSGALG00010013206)	ENSGALG00010013115	IDS (ENSGALG00010013162)	TMEM185A (ENSGALG00010013139)	ENSGALG00010013062	MAMLD1 (ENSGALG00010011617)	MTM1 (ENSGALG00010011485)	MTMR1 (ENSGALG00010011466)	CD99L2 (ENSGALG00010011441)	HMGB3 (ENSGALG00010011420)	GPR50 (ENSGALG00010011388)	VMA21 (ENSGALG00010011372)	ENSGALG00010012725
Turkey	MODERN SPECIES	29	ENSMGAG00000008030	ENSMGAG00000007992	ENSMGAG00000008052	ENSMGAG00000008054	ENSMGAG00000008055	ENSMGAG00000008077	ENSMGAG00000008089	ENSMGAG00000021483	ENSMGAG00000008117	ENSMGAG00000022120	ENSMGAG00000019161	ENSMGAG00000008180	ENSMGAG00000008205	ENSMGAG00000008246	ENSMGAG00000022917	ENSMGAG00000008270 ##22	ENSMGAG00000007851	ENSMGAG00000007840	ENSMGAG00000007712	PGRMC1 (ENSMGAG00000007828)	ENSMGAG00000018516	SLC25A43 (ENSMGAG00000018131)	SLC25A5 (ENSMGAG00000007809)	STEEP1 (ENSMGAG00000007793)	UBE2A (ENSMGAG00000017165)	NKRF (ENSMGAG00000007747)	RPL39 (ENSMGAG00000007745)	UPF3B (ENSMGAG00000007728)	ENSMGAG00000007722	AKAP14 (ENSMGAG00000007709)	NKAP (ENSMGAG00000007693)
Australian saltwater crocodile	MODERN SPECIES	43	NUP62 (ENSCPRG00005007086)	RBM41 (ENSCPRG00005007080)	ENSCPRG00005007078	CLDN2 (ENSCPRG00005007070)	MORC4 (ENSCPRG00005007034)	PRRG3 (ENSCPRG00005007028)	ENSCPRG00005007026	CNGA2 (ENSCPRG00005007016)	ENSCPRG00005007011	ENSCPRG00005006996	GABRA3 (ENSCPRG00005006988)	ENSCPRG00005006977	SOX3 (ENSCPRG00005006971)	SLITRK4 (ENSCPRG00005006954)	SLITRK2 (ENSCPRG00005006946)	FMR1 (ENSCPRG00005006929) ##22	AFF2 (ENSCPRG00005006908)	IDS (ENSCPRG00005006885)	TMEM185A (ENSCPRG00005006880)	ENSCPRG00005006858	ENSCPRG00005006854	MAMLD1 (ENSCPRG00005006835)	MTM1 (ENSCPRG00005006818)	MTMR1 (ENSCPRG00005006298)	CD99L2 (ENSCPRG00005006210)	HMGB3 (ENSCPRG00005006203)	GPR50 (ENSCPRG00005006198)	VMA21 (ENSCPRG00005006195)	ENSCPRG00005006188	ENSCPRG00005006185	TBC1D8B (ENSCPRG00005006176)
Mammalia	ANCESTRAL SPECIES	44	ENSGT00530000063353.b	ENSGT01070000253816.a.b	ENSGT00940000158723	ENSGT00940000153425	ENSGT00940000163390	ENSGT00940000162539	ENSGT00940000160788	ENSGT00940000163347	ENSGT00940000162313	ENSGT00940000159516	ENSGT00940000156974	ENSGT00940000158878	ENSGT00940000162359	ENSGT00940000160971	ENSGT00940000161248	ENSGT00950000183189.a.b.b ##22	ENSGT00390000007953	ENSGT00950000182974.a.a.a.a	ENSGT00940000156803	ENSGT00940000158388	ENSGT00940000157452	ENSGT00390000012182	ENSGT00730000111366	ENSGT00940000157029	ENSGT00940000153669.b	ENSGT00940000154344.a	ENSGT00940000153299.d	ENSGT00940000160515	ENSGT00390000017980	ENSGT00940000164304
Theria	ANCESTRAL SPECIES	34	ENSGT00530000063353.b	ENSGT01070000253816.a.b	ENSGT00940000158723	ENSGT00940000153425.a.a	ENSGT00940000163390	ENSGT00940000162539	ENSGT00940000160788	ENSGT00940000163347	ENSGT00940000162313	ENSGT00940000159516	ENSGT00940000156974	ENSGT00940000158878	ENSGT00940000162359	ENSGT00940000160971	ENSGT00940000161248	ENSGT00950000183189.a.b.b ##22	ENSGT00390000007953	ENSGT00950000182974.a.a.a.a	ENSGT00940000156803	ENSGT00940000158388	ENSGT00940000157452	ENSGT00940000161825	ENSGT00390000012182	ENSGT00730000111366	ENSGT00940000157029	ENSGT00940000153669.b	ENSGT00940000154344.a	ENSGT00940000153299.d	ENSGT00940000160515	ENSGT00390000017980	ENSGT00940000164304
Marsupialia	ANCESTRAL SPECIES	47														ENSGT00940000170860	ENSGT00390000002869.mb.b	ENSGT00950000183189.a.b.b ##22	ENSGT00950000182974.a.a.a.a	ENSGT00940000166119	ENSGT00940000156803	ENSGT00940000158388	ENSGT00940000157452	ENSGT00940000161825	ENSGT00390000012182	ENSGT00730000111366	ENSGT00940000157029	ENSGT00940000153669.b	ENSGT00940000154344.a	ENSGT00940000153299.d	ENSGT00940000160515	ENSGT00390000017980.qb.a	ENSGT00940000155374
Marsupialia_b	ANCESTRAL SPECIES	38														ENSGT00940000170860	ENSGT00390000002869.mb.b	ENSGT00950000183189.a.b.b ##22	ENSGT00950000182974.a.a.a.a	ENSGT00940000166119	ENSGT00940000156803	ENSGT00940000158388	ENSGT00940000157452	ENSGT00940000161825	ENSGT00390000012182	ENSGT00390000004757.f	ENSGT00730000111366	ENSGT00940000157029	ENSGT00940000153669.b	ENSGT00940000154344.a	ENSGT00940000153299.d	ENSGT00940000160515	ENSGT00390000017980.qb.b
Diprotodontia	ANCESTRAL SPECIES	82														ENSGT00940000170860	ENSGT00390000002869.mb.b	ENSGT00950000183189.a.b.b ##22	ENSGT00950000182974.a.a.a.a	ENSGT00940000166119	ENSGT00940000156803	ENSGT00940000158388	ENSGT00940000157452	ENSGT00390000012182	ENSGT00390000004757.f	ENSGT00730000111366	ENSGT00940000157029	ENSGT00940000153669.b	ENSGT00940000154344.a	ENSGT00940000153299.d	ENSGT00940000160515	ENSGT00390000017980.qb.b	ENSGT00940000164304
Diprotodontia_a	ANCESTRAL SPECIES	78												ENSGT00940000165129	ENSGT00390000002428.a.f	ENSGT00940000170860	ENSGT00390000002869.mb.b	ENSGT00950000183189.a.b.b ##22	ENSGT00940000162325.A ##8	ENSGT00950000182974.a.a.a.a	ENSGT00940000166119	ENSGT00940000156803	ENSGT00940000158388	ENSGT00940000157452	ENSGT00390000012182	ENSGT00390000004757.f	ENSGT00730000111366	ENSGT00940000157029	ENSGT00940000153669.b	ENSGT00940000154344.a	ENSGT00940000153299.d	ENSGT00940000160515	ENSGT00390000017980.qb.b
koala	MODERN SPECIES	259									ENSPCIG00000032068	ENSPCIG00000035326	ENSPCIG00000018632	SLITRK2 (ENSPCIG00000017825)	PRKACG (ENSPCIG00000015374)	ENSPCIG00000015366	ENSPCIG00000022487	FMR1 (ENSPCIG00000022498) ##22	ENSPCIG00000032920 ##8	AFF2 (ENSPCIG00000030054)	ENSPCIG00000022367	IDS (ENSPCIG00000022372)
Common wonbat	MODERN SPECIES	1210											PRKACG (ENSVURG00010018426)	ENSVURG00010018420	ENSVURG00010018410	ENSVURG00010018399	ENSVURG00010018385	FMR1 (ENSVURG00010018346) ##22	ENSVURG00010018323 ##8	AFF2 (ENSVURG00010018279)	ENSVURG00010018259	ENSVURG00010018254	IDS (ENSVURG00010018244)	TMEM185A (ENSVURG00010018223)	ENSVURG00010018219	ENSVURG00010018208
Wallaby	MODERN SPECIES	1175																ENSMEUG00000014280 ##22
Tasmanian devil	MODERN SPECIES	21	ENSSHAG00000031918	ENSSHAG00000023320	F9 (ENSSHAG00000008930)	MCF2 (ENSSHAG00000009413)	ATP11C (ENSSHAG00000010576)	SOX3 (ENSSHAG00000007719)	ENSSHAG00000011738	SLITRK4 (ENSSHAG00000028656)	ENSSHAG00000031568	ENSSHAG00000001348	SLITRK2 (ENSSHAG00000031278)	ENSSHAG00000028924	ENSSHAG00000020828	ENSSHAG00000031221	ENSSHAG00000010068	FMR1 (ENSSHAG00000012940) ##22	ENSSHAG00000029814	AFF2 (ENSSHAG00000009556)	ENSSHAG00000024523	ENSSHAG00000013671	ENSSHAG00000024398	ENSSHAG00000028992	ENSSHAG00000025667	ENSSHAG00000014983	ENSSHAG00000024003	ENSSHAG00000016582	MTMR1 (ENSSHAG00000000486)	ENSSHAG00000022923	ENSSHAG00000023945	HMGB3 (ENSSHAG00000020696)	ENSSHAG00000008896
Opossum	MODERN SPECIES	627	RAP2C (ENSMODG00000015308)	MBNL3 (ENSMODG00000015304)	ENSMODG00000015297	GPC4 (ENSMODG00000015295)	GPC3 (ENSMODG00000015268)	ENSMODG00000015264	PHF6 (ENSMODG00000015259)	ENSMODG00000015247	PABIR2 (ENSMODG00000015195)	ENSMODG00000015185	ENSMODG00000015178	ENSMODG00000015168	ENSMODG00000028019	ENSMODG00000049437	ENSMODG00000043108	FMR1 (ENSMODG00000005550) ##22	ENSMODG00000047891	ENSMODG00000027457	ENSMODG00000005557	AFF2 (ENSMODG00000005570)	ENSMODG00000050478	IDS (ENSMODG00000005597)	TMEM185A (ENSMODG00000005605)	HSFX (ENSMODG00000048982)	ENSMODG00000028107	ENSMODG00000005620	ENSMODG00000050538	ENSMODG00000005627	MTM1 (ENSMODG00000005671)	MTMR1 (ENSMODG00000005714)	ENSMODG00000028278
Eutheria	ANCESTRAL SPECIES	16	ENSGT00940000153425.a.a.b.b	ENSGT00940000163390	ENSGT00940000162539	ENSGT00940000160788	ENSGT00940000163347	ENSGT00940000162864	ENSGT00940000162313	ENSGT00940000159516	ENSGT00940000156974	ENSGT00940000158878	ENSGT00390000004226	ENSGT00940000162359	ENSGT00940000160971	ENSGT00940000161248	ENSGT00940000165847	ENSGT00950000183189.a.b.b ##22	ENSGT00390000007953	ENSGT00950000182974.a.a.a.a	ENSGT00940000156803	ENSGT00940000158388	ENSGT00940000163633	ENSGT00940000161825	ENSGT00390000012182	ENSGT00730000111366	ENSGT00940000157029	ENSGT00940000153669.b	ENSGT00940000154344.a	ENSGT00940000153299.d	ENSGT00940000160515	ENSGT00390000017980	ENSGT00940000160946
Boreoeutheria	ANCESTRAL SPECIES	11	ENSGT00940000163347	ENSGT00940000162864	ENSGT00940000162313	ENSGT00940000159516	ENSGT00940000156974	ENSGT00940000158878	ENSGT00390000004226	ENSGT00390000002886.b.b	ENSGT00940000162359	ENSGT00940000164798	ENSGT00940000162721	ENSGT00940000160971	ENSGT00940000161248	ENSGT00940000165847	ENSGT00910000146020	ENSGT00950000183189.a.b.b ##22	ENSGT00390000007953	ENSGT00950000182974.a.a.a.a	ENSGT00970000197053	ENSGT00940000156803	ENSGT00390000012182	ENSGT00940000161825	ENSGT00940000163633	ENSGT00940000158388	ENSGT00730000111366	ENSGT00940000157029	ENSGT00940000153669.b	ENSGT00940000154344.a	ENSGT00940000153299.d	ENSGT00940000160515	ENSGT00390000017980
Euarchontoglires	ANCESTRAL SPECIES	11	ENSGT00940000162539	ENSGT00940000160788	ENSGT00940000163347	ENSGT00940000162864	ENSGT00940000162313	ENSGT00940000159516	ENSGT00940000156974	ENSGT00940000158878	ENSGT00390000004226	ENSGT00390000002886.b.b	ENSGT00940000162359	ENSGT00940000164798	ENSGT00940000162721	ENSGT00940000160971	ENSGT00940000161248	ENSGT00950000183189.a.b.b ##22	ENSGT00390000007953	ENSGT00950000182974.a.a.a.a	ENSGT00970000197053	ENSGT00940000156803	ENSGT00940000163633	ENSGT00940000158388	ENSGT00940000161825	ENSGT00390000012182	ENSGT00730000111366	ENSGT00940000157029	ENSGT00940000153669.b	ENSGT00940000154344.a	ENSGT00940000153299.c.a.b	ENSGT00940000153299.d	ENSGT00940000160515
Euarchontoglires_A	ANCESTRAL SPECIES	11	ENSGT00940000163390	ENSGT00940000162539	ENSGT00940000160788	ENSGT00940000162864	ENSGT00940000162313	ENSGT00940000159516	ENSGT00940000156974	ENSGT00940000158878	ENSGT00390000004226	ENSGT00390000002886.b.b	ENSGT00940000162359	ENSGT00940000164798	ENSGT00940000162721	ENSGT00940000160971	ENSGT00940000161248	ENSGT00950000183189.a.b.b ##22	ENSGT00390000007953	ENSGT00950000182974.a.a.a.a	ENSGT00940000156803	ENSGT00390000012182	ENSGT00940000161825	ENSGT00940000158388	ENSGT00730000111366	ENSGT00940000157029	ENSGT00940000153669.b	ENSGT00940000154344.a	ENSGT00940000153299.c.a.b	ENSGT00940000160515	ENSGT00390000017980	ENSGT00530000064765	ENSGT00940000160946
Tree shrew	MODERN SPECIES	6068																FMR1 (ENSTBEG00000003253) ##22
Glires	ANCESTRAL SPECIES	10	ENSGT00940000163390	ENSGT00940000162539	ENSGT00940000160788	ENSGT00940000162864	ENSGT00940000162313	ENSGT00940000159516	ENSGT00940000156974	ENSGT00940000158878	ENSGT00390000004226	ENSGT00390000002886.b.b	ENSGT00940000162359	ENSGT00940000164798	ENSGT00940000162721	ENSGT00940000160971	ENSGT00940000161248	ENSGT00950000183189.a.b.b ##22	ENSGT00390000007953	ENSGT00950000182974.a.a.a.a	ENSGT00940000156803	ENSGT00390000012182	ENSGT00940000161825	ENSGT00940000165994	ENSGT00940000158388	ENSGT00730000111366	ENSGT00940000157029	ENSGT00940000153669.b	ENSGT00940000154344.a	ENSGT00940000153299.c.a.b	ENSGT00940000160515	ENSGT00390000017980	ENSGT00530000064765
Lagomorpha	ANCESTRAL SPECIES	302														ENSGT00940000161248	ENSGT00940000165847	ENSGT00950000183189.a.b.b ##22	ENSGT00950000182974.a.a.a.a	ENSGT00940000156803	ENSGT00390000012182	ENSGT00940000161825
Rabbit	MODERN SPECIES	433	ENSOCUG00000012140	ENSOCUG00000025136	SOX3 (ENSOCUG00000016779)	ENSOCUG00000025072	ENSOCUG00000036101	ENSOCUG00000024673	LDOC1 (ENSOCUG00000023824)	ENSOCUG00000023139	SLITRK4 (ENSOCUG00000009653)	ENSOCUG00000021561	ENSOCUG00000036604	SLITRK2 (ENSOCUG00000002285)	ENSOCUG00000024125	ENSOCUG00000039152	ENSOCUG00000038207	FMR1 (ENSOCUG00000014621) ##22	ENSOCUG00000029389	AFF2 (ENSOCUG00000013873)	ENSOCUG00000029180	IDS (ENSOCUG00000012026)	ENSOCUG00000006623	ENSOCUG00000025707	ENSOCUG00000024590	ENSOCUG00000012113	ENSOCUG00000007734	ENSOCUG00000039591	ENSOCUG00000037714
Pika	MODERN SPECIES	5362																ENSOPRG00000012759 ##22
Rodentia	ANCESTRAL SPECIES	10	ENSGT00940000163390	ENSGT00940000162539	ENSGT00940000160788	ENSGT00940000162864	ENSGT00940000162313	ENSGT00940000159516	ENSGT00940000156974	ENSGT00940000158878	ENSGT00390000004226	ENSGT00390000002886.b.b	ENSGT00940000162359	ENSGT00940000164798	ENSGT00940000162721	ENSGT00940000160971	ENSGT00940000161248	ENSGT00950000183189.a.b.b ##22	ENSGT00390000007953	ENSGT00950000182974.a.a.a.a	ENSGT00940000156803	ENSGT00390000012182	ENSGT00940000161825	ENSGT00940000158388	ENSGT00730000111366	ENSGT00940000157029	ENSGT00940000153669.b	ENSGT00940000154344.a	ENSGT00940000153299.c.a.b	ENSGT00940000160515	ENSGT00390000017980	ENSGT00530000064765	ENSGT00940000160946
Rodentia_A	ANCESTRAL SPECIES	9	ENSGT00940000153425.a.a.b.b	ENSGT00940000162539	ENSGT00940000160788	ENSGT00940000162864.c	ENSGT00940000162313	ENSGT00940000159516	ENSGT00940000156974	ENSGT00940000158878	ENSGT00390000004226	ENSGT00390000002886.b.b	ENSGT00940000162359	ENSGT00940000164798	ENSGT00940000162721	ENSGT00940000160971	ENSGT00940000161248	ENSGT00950000183189.a.b.b ##22	ENSGT00390000007953	ENSGT00950000182974.a.a.a.a	ENSGT00940000156803	ENSGT00390000012182	ENSGT00940000161825	ENSGT00940000154972	ENSGT00940000158388	ENSGT00730000111366	ENSGT00940000157029	ENSGT00940000153669.b	ENSGT00940000154344.a	ENSGT00940000153299.c.a.b	ENSGT00940000160515	ENSGT00390000017980	ENSGT00940000160946
Sciuridae	ANCESTRAL SPECIES	27	ENSGT00940000153425.a.a.b.b	ENSGT00940000162539	ENSGT00940000160788	ENSGT00940000162864.c	ENSGT00940000162313	ENSGT00940000159516	ENSGT00940000156974	ENSGT00940000158878	ENSGT00390000004226	ENSGT00390000002886.b.b	ENSGT00940000162359	ENSGT00940000164798	ENSGT00940000162721	ENSGT00940000160971	ENSGT00940000161248	ENSGT00950000183189.a.b.b ##22	ENSGT00390000007953	ENSGT00950000182974.a.a.a.a	ENSGT00940000156803	ENSGT00940000158388	ENSGT00940000154972.gb.a	ENSGT00730000111366	ENSGT00940000157029	ENSGT00940000153669.b	ENSGT00940000154344.a	ENSGT00940000153299.c.a.b	ENSGT00940000160515	ENSGT00390000017980	ENSGT00940000160946	ENSGT00390000006832	ENSGT00940000155374
Marmotini	ANCESTRAL SPECIES	72	ENSGT01070000253816.a.b	ENSGT00940000158723	ENSGT00940000153425.a.a.b.b	ENSGT00940000162539	ENSGT00940000160788	ENSGT00940000162864.c	ENSGT00940000162313	ENSGT00940000159516	ENSGT00940000156974	ENSGT00940000158878	ENSGT00390000004226	ENSGT00700000106222	ENSGT00940000160971	ENSGT00960000192900	ENSGT00940000161248	ENSGT00950000183189.a.b.b ##22	ENSGT00390000007953	ENSGT00950000182974.a.a.a.a	ENSGT00940000156803	ENSGT00940000158388	ENSGT00940000154972.gb.a	ENSGT00940000154972.gb.b.a	ENSGT00940000161825	ENSGT00390000012182	ENSGT00730000111366	ENSGT00940000157029	ENSGT00940000153669.b	ENSGT00940000154344.a	ENSGT00940000153299.c.a.b	ENSGT00940000160515	ENSGT00390000017980
Marmotini_b	ANCESTRAL SPECIES	104	ENSGT00530000063353.b	ENSGT01070000253816.a.b	ENSGT00940000158723	ENSGT00940000153425.a.a.b.b	ENSGT00940000162539	ENSGT00940000160788	ENSGT00940000162864.c	ENSGT00940000162313	ENSGT00940000159516	ENSGT00940000156974	ENSGT00940000158878	ENSGT00700000106222	ENSGT00940000160971	ENSGT00960000192900	ENSGT00940000161248	ENSGT00950000183189.a.b.b ##22	ENSGT00950000182974.a.a.a.a	ENSGT00940000156803	ENSGT00390000012182	ENSGT00940000161825	ENSGT00940000154972.gb.b.a	ENSGT00940000158388	ENSGT00940000154972.gb.a
Arctic ground squirrel	MODERN SPECIES	708																FMR1 (ENSUPAG00010008414) ##22
Squirrel	MODERN SPECIES	113	VGLL1 (ENSSTOG00000012521)	CD40LG (ENSSTOG00000006163)	ENSSTOG00000033794	ARHGEF6 (ENSSTOG00000006178)	RBMX (ENSSTOG00000006211)	GPR101 (ENSSTOG00000002026)	ZIC3 (ENSSTOG00000024153)	FGF13 (ENSSTOG00000013920)	F9 (ENSSTOG00000010803)	MCF2 (ENSSTOG00000029050)	ATP11C (ENSSTOG00000010827)	LDOC1 (ENSSTOG00000019751)	SLITRK4 (ENSSTOG00000027854)	ENSSTOG00000025269	SLITRK2 (ENSSTOG00000003070)	FMR1 (ENSSTOG00000003260) ##22	AFF2 (ENSSTOG00000004799)	IDS (ENSSTOG00000011740)
Alpin marmot	MODERN SPECIES	50	GPR101 (ENSMMMG00000012861)	ZIC3 (ENSMMMG00000012845)	ENSMMMG00000012790	FGF13 (ENSMMMG00000012768)	F9 (ENSMMMG00000012745)	ENSMMMG00000012728	ATP11C (ENSMMMG00000012599)	ENSMMMG00000012587	LDOC1 (ENSMMMG00000012582)	SLITRK4 (ENSMMMG00000012562)	ENSMMMG00000012552	SLITRK2 (ENSMMMG00000012547)	ENSMMMG00000012541	ENSMMMG00000012535	ENSMMMG00000012529	FMR1 (ENSMMMG00000012509) ##22	ENSMMMG00000012501	AFF2 (ENSMMMG00000012476)	IDS (ENSMMMG00000012466)	ENSMMMG00000012460	ENSMMMG00000012453	ENSMMMG00000012439	ENSMMMG00000012418	ENSMMMG00000012401	ENSMMMG00000012387	MAMLD1 (ENSMMMG00000012347)	MTM1 (ENSMMMG00000012065)	MTMR1 (ENSMMMG00000012049)	CD99L2 (ENSMMMG00000012040)	ENSMMMG00000011985	ENSMMMG00000011974
Eurasian red squirrel	MODERN SPECIES	156	LDOC1 (ENSSVLG00005024361)	ENSSVLG00005024344	ENSSVLG00005024337	ENSSVLG00005024311	ENSSVLG00005024281	ENSSVLG00005024259	SLITRK4 (ENSSVLG00005024239)	ENSSVLG00005024221	ENSSVLG00005024178	ENSSVLG00005024153	ENSSVLG00005024138	SLITRK2 (ENSSVLG00005024126)	ENSSVLG00005024095	ENSSVLG00005024085	ENSSVLG00005024061	FMR1 (ENSSVLG00005023968) ##22	FMR1NB (ENSSVLG00005023923)	AFF2 (ENSSVLG00005023603)	IDS (ENSSVLG00005023489)	ENSSVLG00005023440	ENSSVLG00005023405	ENSSVLG00005023391	TMEM185A (ENSSVLG00005023306)	ENSSVLG00005023272	ENSSVLG00005023222	ENSSVLG00005023183	ENSSVLG00005023146	MTM1 (ENSSVLG00005023047)	MTMR1 (ENSSVLG00005022934)	CD99L2 (ENSSVLG00005022834)	ENSSVLG00005022779
Hystricomorpha	ANCESTRAL SPECIES	54														ENSGT00940000160971	ENSGT00940000161248	ENSGT00950000183189.a.b.b ##22	ENSGT00950000182974.a.a.a.a	ENSGT00940000156803	ENSGT00940000158388	ENSGT00940000161825	ENSGT00390000012182	ENSGT00730000111366	ENSGT00940000157029	ENSGT00940000153669.b	ENSGT00940000154344.a	ENSGT00940000153299.c.a.b.f	ENSGT00940000160515	ENSGT00390000017980	ENSGT00940000160946	ENSGT00390000006832	ENSGT00940000155374
Hystricomorpha_a	ANCESTRAL SPECIES	61																ENSGT00950000183189.a.b.b ##22	ENSGT00950000182974.a.a.a.a	ENSGT00940000156803	ENSGT00940000158388	ENSGT00940000161825	ENSGT00390000012182	ENSGT00730000111366	ENSGT00940000157029	ENSGT00940000153669.b	ENSGT00940000154344.a	ENSGT00940000153299.c.a.b.f	ENSGT00940000160515	ENSGT00390000017980	ENSGT00940000160946	ENSGT00390000006832	ENSGT00940000155374
Guinea pig	MODERN SPECIES	84														ENSCPOG00000020563	ENSCPOG00000012523	FMR1 (ENSCPOG00000003723) ##22	AFF2 (ENSCPOG00000011626)	IDS (ENSCPOG00000039334)	ENSCPOG00000031168
Hystricomorpha_b	ANCESTRAL SPECIES	84																ENSGT00950000183189.a.b.b ##22	ENSGT00950000182974.a.a.a.a	ENSGT00940000156803	ENSGT00390000012182	ENSGT00940000158388	ENSGT00730000111366	ENSGT00940000157029	ENSGT00940000153669.b	ENSGT00940000154344.a	ENSGT00940000153299.c.a.b.f	ENSGT00940000160515	ENSGT00390000017980	ENSGT00940000160946	ENSGT00390000006832	ENSGT00940000155374	ENSGT00940000161201
Long-tailed chinchilla	MODERN SPECIES	205																FMR1 (ENSCLAG00000001233) ##22	AFF2 (ENSCLAG00000003972)	IDS (ENSCLAG00000001342)	ENSCLAG00000001484	ENSCLAG00000001638	ENSCLAG00000001820	TMEM185A (ENSCLAG00000002110)	MAMLD1 (ENSCLAG00000002359)	MTM1 (ENSCLAG00000000881)	MTMR1 (ENSCLAG00000000560)	CD99L2 (ENSCLAG00000000614)	ENSCLAG00000000887	GPR50 (ENSCLAG00000000929)	VMA21 (ENSCLAG00000001014)	PRRG3 (ENSCLAG00000000825)	ENSCLAG00000000927
Degu	MODERN SPECIES	222											ENSODEG00000009047	ENSODEG00000009329	ENSODEG00000010050	ENSODEG00000008514	ENSODEG00000008653	FMR1 (ENSODEG00000008377) ##22	ENSODEG00000009513	AFF2 (ENSODEG00000009737)	IDS (ENSODEG00000008960)	ENSODEG00000019829
Naked mole-rat female	MODERN SPECIES	31	ENSHGLG00000009095	ATP11C (ENSHGLG00000007759)	ENSHGLG00000047068	SOX3 (ENSHGLG00000039208)	ENSHGLG00000039059	ENSHGLG00000004407	ENSHGLG00000037583	ENSHGLG00000036529	ENSHGLG00000049672	ENSHGLG00000038876	ENSHGLG00000032750	ENSHGLG00000035566	SLITRK2 (ENSHGLG00000007935)	ENSHGLG00000045634	ENSHGLG00000040472	FMR1 (ENSHGLG00000000576) ##22	ENSHGLG00000019716	ENSHGLG00000028863	AFF2 (ENSHGLG00000000634)	IDS (ENSHGLG00000049970)	ENSHGLG00000043323	ENSHGLG00000035389	ENSHGLG00000002010	ENSHGLG00000047737	ENSHGLG00000049566	ENSHGLG00000046464	ENSHGLG00000049532	ENSHGLG00000000701	DKC1 (ENSHGLG00000000649)	MPP1 (ENSHGLG00000000629)	ENSHGLG00000000581
Rodentia_B	ANCESTRAL SPECIES	16	ENSGT00940000163390	ENSGT00940000162539	ENSGT00940000160788	ENSGT00940000162864	ENSGT00940000162313	ENSGT00940000159516	ENSGT00940000156974	ENSGT00940000158878	ENSGT00390000004226	ENSGT00390000002886.b.b	ENSGT00940000162359	ENSGT00940000162721	ENSGT00700000106222	ENSGT00940000160971	ENSGT00940000161248	ENSGT00950000183189.a.b.b ##22	ENSGT00390000007953	ENSGT00950000182974.a.a.a.a	ENSGT00940000156803	ENSGT00390000012182	ENSGT00940000158388	ENSGT00730000111366	ENSGT00940000157029	ENSGT00940000153669.b	ENSGT00940000154344.a	ENSGT00940000153299.c.a.b	ENSGT00940000160515	ENSGT00390000017980	ENSGT00530000064765	ENSGT00940000160946	ENSGT00390000006832
Kangaroo rat	MODERN SPECIES	408	Gpr101 (ENSDORG00000011583)	Zic3 (ENSDORG00000025481)	Fgf13 (ENSDORG00000023968)	F9 (ENSDORG00000003933)	Mcf2 (ENSDORG00000006306)	Atp11c (ENSDORG00000003661)	ENSDORG00000026314	ENSDORG00000027206	ENSDORG00000027706	Sox3 (ENSDORG00000027035)	Ldoc1 (ENSDORG00000011028)	ENSDORG00000026987	Slitrk4 (ENSDORG00000001489)	ENSDORG00000005920	Slitrk2 (ENSDORG00000000545)	Fmr1 (ENSDORG00000012501) ##22	Aff2 (ENSDORG00000015215)	Ids (ENSDORG00000026027)	Tmem185a (ENSDORG00000015027)	ENSDORG00000010633	Mamld1 (ENSDORG00000027915)	Mtm1 (ENSDORG00000010820)	Mtmr1 (ENSDORG00000010821)	Cd99l2 (ENSDORG00000010822)	Hmgb3 (ENSDORG00000010826)	Gpr50 (ENSDORG00000000063)	Vma21 (ENSDORG00000026433)	Prrg3 (ENSDORG00000002364)	Fate1 (ENSDORG00000002365)	Cnga2 (ENSDORG00000002366)	ENSDORG00000005056
Myomorpha	ANCESTRAL SPECIES	6	ENSGT00940000163390	ENSGT00940000162539	ENSGT00940000160788	ENSGT00940000162864	ENSGT00940000162313	ENSGT00940000159516	ENSGT00940000156974	ENSGT00940000158878	ENSGT00390000004226	ENSGT00390000002886.b.b	ENSGT00940000162359	ENSGT00940000164798	ENSGT00940000162721	ENSGT00940000160971	ENSGT00940000161248	ENSGT00950000183189.a.b.b ##22	ENSGT00390000007953	ENSGT00950000182974.a.a.a.a	ENSGT00940000156803	ENSGT00390000012182	ENSGT00940000158388	ENSGT00730000111366	ENSGT00940000157029	ENSGT00940000153669.b	ENSGT00940000154344.a	ENSGT00940000153299.c.a.b	ENSGT00940000160515	ENSGT00390000017980	ENSGT00530000064765	ENSGT00940000160946	ENSGT00390000006832
Lesser Egyptian jerboa	MODERN SPECIES	76	ENSJJAG00000013053	Tent5a (ENSJJAG00000023080)	Ibtk (ENSJJAG00000018128)	Tpbg (ENSJJAG00000008383)	Ube2cbp (ENSJJAG00000010180)	Dop1a (ENSJJAG00000014556)	Pgm3 (ENSJJAG00000014123)	Rwdd2a (ENSJJAG00000023192)	Me1 (ENSJJAG00000022670)	Snap91 (ENSJJAG00000020722)	Ripply2 (ENSJJAG00000019746)	Cyb5r4 (ENSJJAG00000010025)	Mrap2 (ENSJJAG00000014346)	Cep162 (ENSJJAG00000013634)	Tbx18 (ENSJJAG00000021701)	ENSJJAG00000008538 ##22	Nt5e (ENSJJAG00000022214)	Snx14 (ENSJJAG00000010546)	Syncrip (ENSJJAG00000014190)	Zfp949 (ENSJJAG00000011037)	ENSJJAG00000020312	ENSJJAG00000013247	Minar1 (ENSJJAG00000023967)	Tmed3 (ENSJJAG00000022070)	ENSJJAG00000004605	Rasgrf1 (ENSJJAG00000020927)	Ctsh (ENSJJAG00000009132)	ENSJJAG00000023946	Adamts7 (ENSJJAG00000009587)	ENSJJAG00000022301	Cib2 (ENSJJAG00000015817)
Muroidea	ANCESTRAL SPECIES	13	ENSGT00940000163390	ENSGT00940000162539	ENSGT00940000160788	ENSGT00940000162864	ENSGT00940000162313	ENSGT00940000159516	ENSGT00940000156974	ENSGT00940000158878	ENSGT00390000004226	ENSGT00390000002886.b.b	ENSGT00940000162359	ENSGT00940000162721	ENSGT00700000106222	ENSGT00940000160971	ENSGT00940000161248	ENSGT00950000183189.a.b.b ##22	ENSGT00390000007953	ENSGT00950000182974.a.a.a.a	ENSGT00940000156803	ENSGT00390000012182	ENSGT00940000158388	ENSGT00730000111366	ENSGT00940000157029	ENSGT00940000153669.b	ENSGT00940000154344.a	ENSGT00940000153299.c.a.b	ENSGT00940000160515	ENSGT00390000017980	ENSGT00530000064765	ENSGT00940000160946	ENSGT00390000006832
Upper Galilee mountains blind mole rat	MODERN SPECIES	981																Fmr1 (ENSNGAG00000020908) ##22	Aff2 (ENSNGAG00000020660)	Ids (ENSNGAG00000001103)	Eola1 (ENSNGAG00000011115)
Muroidea_A	ANCESTRAL SPECIES	7	ENSGT00940000162313	ENSGT00940000159516	ENSGT00940000156974	ENSGT00940000158878	ENSGT00390000004226	ENSGT00390000002886.b.b	ENSGT00940000162359	ENSGT00940000162721	ENSGT00940000154972.fb	ENSGT00700000106222	ENSGT00940000154972.eb.b.a.a	ENSGT00940000160971	ENSGT00410000025802.g.b.q.b	ENSGT00860000136220	ENSGT00940000161248	ENSGT00950000183189.a.b.b ##22	ENSGT00390000007953	ENSGT00950000182974.a.a.a.a	ENSGT00940000156803	ENSGT00390000012182	ENSGT00940000158388	ENSGT00730000111366	ENSGT00940000157029	ENSGT00940000153669.b	ENSGT00940000154344.a	ENSGT00940000153299.c.a.b	ENSGT00940000160515	ENSGT00390000017980	ENSGT00530000064765	ENSGT00940000160946	ENSGT00390000006832
Murinae	ANCESTRAL SPECIES	14	ENSGT00940000158878	ENSGT00390000004226	ENSGT00390000002886.b.b	ENSGT00940000162359	ENSGT00940000162721	ENSGT00940000154972.fb	ENSGT00520000060073	ENSGT00700000106222	ENSGT00940000154972.eb.b.a.a	ENSGT00940000160971	ENSGT00410000025802.g.b.q.b	ENSGT00860000136220	ENSGT00940000161248	ENSGT00940000165847	ENSGT00800000125275	ENSGT00950000183189.a.b.b ##22	ENSGT00390000007953	ENSGT00520000056437	ENSGT00950000182974.a.a.a.a	ENSGT00940000156803	ENSGT00390000012182	ENSGT00940000158388	ENSGT00730000111366	ENSGT00940000157029	ENSGT00940000153669.b	ENSGT00940000154344.a	ENSGT00940000153299.c.a.b	ENSGT00940000160515	ENSGT00390000017980	ENSGT00530000064765	ENSGT00940000160946
Mus	ANCESTRAL SPECIES	9	ENSGT00940000158878	ENSGT00390000004226	ENSGT00390000002886.b.b	ENSGT00940000162359	ENSGT00940000162721	ENSGT00940000154972.fb	ENSGT00520000060073	ENSGT00700000106222	ENSGT00940000154972.eb.b.a.a	ENSGT00940000160971	ENSGT00410000025802.g.b.q.b	ENSGT00860000136220	ENSGT00940000161248	ENSGT00390000000062.x.b.l.a	ENSGT00800000125275	ENSGT00950000183189.a.b.b ##22	ENSGT00390000007953	ENSGT00520000056437	ENSGT00950000182974.a.a.a.a	ENSGT00940000156803	ENSGT00390000012182	ENSGT00940000158388	ENSGT00730000111366	ENSGT00940000157029	ENSGT00940000153669.b	ENSGT00940000154344.a	ENSGT00940000153299.c.a.b	ENSGT00940000160515	ENSGT00390000017980	ENSGT00530000064765	ENSGT00940000160946
Mus_A	ANCESTRAL SPECIES	15	ENSGT00940000158878	ENSGT00390000004226	ENSGT00390000002886.b.b	ENSGT00940000162359	ENSGT00940000162721	ENSGT00940000154972.fb	ENSGT00520000060073	ENSGT00700000106222	ENSGT00940000154972.eb.b.a.a	ENSGT00940000160971	ENSGT00410000025802.g.b.q.b	ENSGT00860000136220	ENSGT00940000161248	ENSGT00390000000062.x.b.l.a	ENSGT00800000125275	ENSGT00950000183189.a.b.b ##22	ENSGT00390000007953	ENSGT00520000056437	ENSGT00950000182974.a.a.a.a	ENSGT00940000156803	ENSGT00390000012182	ENSGT00940000158388	ENSGT00730000111366	ENSGT00940000157029	ENSGT00940000153669.b	ENSGT00940000154344.a	ENSGT00940000153299.c.a.b	ENSGT00940000160515	ENSGT00390000017980	ENSGT00530000064765	ENSGT00940000160946
Mus_B	ANCESTRAL SPECIES	14	ENSGT00940000158878	ENSGT00390000004226	ENSGT00390000002886.b.b	ENSGT00940000162359	ENSGT00940000162721	ENSGT00940000154972.fb	ENSGT00520000060073	ENSGT00700000106222	ENSGT00940000154972.eb.b.a.a	ENSGT00940000160971	ENSGT00410000025802.g.b.q.b	ENSGT00860000136220	ENSGT00940000161248	ENSGT00390000000062.x.b.l.a	ENSGT00800000125275	ENSGT00950000183189.a.b.b ##22	ENSGT00390000007953	ENSGT00520000056437	ENSGT00950000182974.a.a.a.a	ENSGT00940000156803	ENSGT00390000012182.lb	ENSGT00940000158388	ENSGT00730000111366	ENSGT00940000157029	ENSGT00940000153669.b	ENSGT00940000154344.a	ENSGT00940000153299.c.a.b	ENSGT00940000160515	ENSGT00390000017980	ENSGT00530000064765	ENSGT00940000160946
Mouse	MODERN SPECIES	37	Atp11c (ENSMUSG00000062949)	Gm7073 (ENSMUSG00000079583)	Gm715 (ENSMUSG00000082226)	Sox3 (ENSMUSG00000045179)	Ldoc1 (ENSMUSG00000057615)	Magec2 (ENSMUSG00000045330)	Gm6760 (ENSMUSG00000079579)	Magea9 (ENSMUSG00000031179)	Slitrk4 (ENSMUSG00000046699)	Ctag2 (ENSMUSG00000031181)	4930447F04Rik (ENSMUSG00000031182)	Slitrk2 (ENSMUSG00000036790)	Gm1140 (ENSMUSG00000079578)	Gm14692 (ENSMUSG00000079577)	4933436I01Rik (ENSMUSG00000025288)	Fmr1 (ENSMUSG00000000838) ##22	Fmr1nb (ENSMUSG00000062170)	Styx-ps (ENSMUSG00000071748)	Aff2 (ENSMUSG00000031189)	1700020N15Rik (ENSMUSG00000059690)	Ids (ENSMUSG00000035847)	Eola1 (ENSMUSG00000045237)	Tmem185a (ENSMUSG00000073139)	Mamld1 (ENSMUSG00000059401)	Mtm1 (ENSMUSG00000031337)	Mtmr1 (ENSMUSG00000015214)	Cd99l2 (ENSMUSG00000035776)	Hmgb3 (ENSMUSG00000015217)	Gpr50 (ENSMUSG00000056380)	Vma21 (ENSMUSG00000073131)	Gm1141 (ENSMUSG00000073130)
Mus_C	ANCESTRAL SPECIES	27	ENSGT00940000156974	ENSGT00940000158878	ENSGT00390000004226	ENSGT00940000162359	ENSGT00940000162721	ENSGT00940000154972.fb	ENSGT00520000060073	ENSGT00700000106222	ENSGT00940000154972.eb.b.a.a	ENSGT00940000160971	ENSGT00410000025802.g.b.q.b	ENSGT00860000136220	ENSGT00940000161248	ENSGT00390000000062.x.b.l.a	ENSGT00800000125275	ENSGT00950000183189.a.b.b ##22	ENSGT00390000007953	ENSGT00520000056437	ENSGT00950000182974.a.a.a.a	ENSGT00940000156803	ENSGT00940000158388	ENSGT00730000111366	ENSGT00940000157029	ENSGT00940000153669.b	ENSGT00940000154344.a	ENSGT00940000153299.c.a.b	ENSGT00940000160515	ENSGT00390000017980	ENSGT00530000064765	ENSGT00940000160946	ENSGT00390000006832
spretus	MODERN SPECIES	19	Mcf2 (MGP_SPRETEiJ_G0034260)	Atp11c (MGP_SPRETEiJ_G0034261)	Gm7073 (MGP_SPRETEiJ_G0034262)	Sox3 (MGP_SPRETEiJ_G0034263)	Ldoc1 (MGP_SPRETEiJ_G0034264)	Magec2 (MGP_SPRETEiJ_G0034265)	MGP_SPRETEiJ_G0034266	Gm6760 (MGP_SPRETEiJ_G0034267)	Magea9 (MGP_SPRETEiJ_G0034268)	Slitrk4 (MGP_SPRETEiJ_G0034269)	Ctag2 (MGP_SPRETEiJ_G0034270)	4930447F04Rik (MGP_SPRETEiJ_G0034271)	Slitrk2 (MGP_SPRETEiJ_G0034272)	MGP_SPRETEiJ_G0034273	4933436I01Rik (MGP_SPRETEiJ_G0034274)	Fmr1 (MGP_SPRETEiJ_G0034275) ##22	Fmr1nb (MGP_SPRETEiJ_G0034276)	1700020N15Rik (MGP_SPRETEiJ_G0034277)	Aff2 (MGP_SPRETEiJ_G0034278)	Ids (MGP_SPRETEiJ_G0034279)	Tmem185a (MGP_SPRETEiJ_G0034280)	Mamld1 (MGP_SPRETEiJ_G0034281)	Mtm1 (MGP_SPRETEiJ_G0034282)	Mtmr1 (MGP_SPRETEiJ_G0034283)	Cd99l2 (MGP_SPRETEiJ_G0034284)	Gpr50 (MGP_SPRETEiJ_G0034285)	MGP_SPRETEiJ_G0034286	MGP_SPRETEiJ_G0034287	Prrg3 (MGP_SPRETEiJ_G0034288)	Fate1 (MGP_SPRETEiJ_G0034289)	Cnga2 (MGP_SPRETEiJ_G0034290)
Steppe mouse	MODERN SPECIES	1752																Fmr1 (ENSMSIG00000025099) ##22
Ryukyu mouse	MODERN SPECIES	19	Mcf2 (MGP_CAROLIEiJ_G0033106)	Atp11c (MGP_CAROLIEiJ_G0033107)	Gm7073 (MGP_CAROLIEiJ_G0033108)	Sox3 (MGP_CAROLIEiJ_G0033109)	MGP_CAROLIEiJ_G0033110	Ldoc1 (MGP_CAROLIEiJ_G0033111)	Magec2 (MGP_CAROLIEiJ_G0033112)	MGP_CAROLIEiJ_G0033113	Gm6760 (MGP_CAROLIEiJ_G0033114)	Magea9 (MGP_CAROLIEiJ_G0033115)	Slitrk4 (MGP_CAROLIEiJ_G0033116)	Ctag2 (MGP_CAROLIEiJ_G0033117)	4930447F04Rik (MGP_CAROLIEiJ_G0033118)	Slitrk2 (MGP_CAROLIEiJ_G0033119)	4933436I01Rik (MGP_CAROLIEiJ_G0033120)	Fmr1 (MGP_CAROLIEiJ_G0033121) ##22	Fmr1nb (MGP_CAROLIEiJ_G0033122)	Aff2 (MGP_CAROLIEiJ_G0033123)	1700020N15Rik (MGP_CAROLIEiJ_G0033124)	Ids (MGP_CAROLIEiJ_G0033125)	Eola1 (MGP_CAROLIEiJ_G0033126)	Tmem185a (MGP_CAROLIEiJ_G0033127)	Mtm1 (MGP_CAROLIEiJ_G0033128)	Mamld1 (MGP_CAROLIEiJ_G0033129)	Mtmr1 (MGP_CAROLIEiJ_G0033130)	Cd99l2 (MGP_CAROLIEiJ_G0033131)	Gpr50 (MGP_CAROLIEiJ_G0033132)	Vma21 (MGP_CAROLIEiJ_G0033133)	MGP_CAROLIEiJ_G0033134	Prrg3 (MGP_CAROLIEiJ_G0033135)	MGP_CAROLIEiJ_G0033136
Shrew mouse	MODERN SPECIES	23	MGP_PahariEiJ_G0031648	Atp11c (MGP_PahariEiJ_G0031649)	Gm7073 (MGP_PahariEiJ_G0031650)	Sox3 (MGP_PahariEiJ_G0031651)	Ldoc1 (MGP_PahariEiJ_G0031652)	Magec2 (MGP_PahariEiJ_G0031653)	MGP_PahariEiJ_G0031654	Gm6760 (MGP_PahariEiJ_G0031655)	Magea9 (MGP_PahariEiJ_G0031656)	Slitrk4 (MGP_PahariEiJ_G0031657)	Ctag2 (MGP_PahariEiJ_G0031658)	4930447F04Rik (MGP_PahariEiJ_G0031659)	Slitrk2 (MGP_PahariEiJ_G0031660)	MGP_PahariEiJ_G0031661	MGP_PahariEiJ_G0031662	Fmr1 (MGP_PahariEiJ_G0031663) ##22	MGP_PahariEiJ_G0031664	MGP_PahariEiJ_G0031665	Aff2 (MGP_PahariEiJ_G0031666)	Ids (MGP_PahariEiJ_G0031667)	Eola1 (MGP_PahariEiJ_G0031668)	Tmem185a (MGP_PahariEiJ_G0031669)	Mamld1 (MGP_PahariEiJ_G0031670)	Mtm1 (MGP_PahariEiJ_G0031671)	Mtmr1 (MGP_PahariEiJ_G0031672)	Cd99l2 (MGP_PahariEiJ_G0031673)	Gpr50 (MGP_PahariEiJ_G0031674)	MGP_PahariEiJ_G0031675	MGP_PahariEiJ_G0031676	Prrg3 (MGP_PahariEiJ_G0031677)	Fate1 (MGP_PahariEiJ_G0031678)
Rat	MODERN SPECIES	46	ENSRNOG00000067343	AABR07042071.1 (ENSRNOG00000046097)	Magea9 (ENSRNOG00000023016)	Slitrk4 (ENSRNOG00000062783)	Ctag2 (ENSRNOG00000012560)	AABR07042226.1 (ENSRNOG00000058521)	LOC120099343 (ENSRNOG00000066658)	Slitrk2 (ENSRNOG00000011562)	LOC689396 (ENSRNOG00000032418)	ENSRNOG00000067514	AABR07042293.1 (ENSRNOG00000037381)	LOC100912196 (ENSRNOG00000062315)	Fam9c (ENSRNOG00000069253)	ENSRNOG00000069396	AABR07042418.1 (ENSRNOG00000051726)	Fmr1 (ENSRNOG00000057464) ##22	Fmr1nb (ENSRNOG00000053397)	LOC689600 (ENSRNOG00000067249)	Aff2 (ENSRNOG00000052572)	LOC100360413 (ENSRNOG00000051885)	LOC689600 (ENSRNOG00000064273)	Ids (ENSRNOG00000001465)	Eola2 (ENSRNOG00000063254)	LOC120099181 (ENSRNOG00000050915)	Tmem185a (ENSRNOG00000011047)	Hmgb3 (ENSRNOG00000011096)	Rpsa-ps4 (ENSRNOG00000022882)	Gpr50 (ENSRNOG00000011335)	Vma21 (ENSRNOG00000048606)	RGD1561481 (ENSRNOG00000064535)	RGD1308750 (ENSRNOG00000048356)
Cricetidae	ANCESTRAL SPECIES	8	ENSGT00940000159516	ENSGT00940000156974	ENSGT00940000158878	ENSGT00390000004226	ENSGT00390000002886.b.b	ENSGT00940000162359	ENSGT00940000162721	ENSGT00940000154972.fb	ENSGT00700000106222	ENSGT00940000154972.eb.b.a.a	ENSGT00940000160971	ENSGT00410000025802.g.b.q.b	ENSGT00860000136220	ENSGT00940000161248	ENSGT00390000000062.x.b.l.a	ENSGT00950000183189.a.b.b ##22	ENSGT00950000182974.a.a.a.a	ENSGT00940000156803	ENSGT00390000012182	ENSGT00940000158388	ENSGT00940000161825	ENSGT00730000111366	ENSGT00940000157029	ENSGT00940000153669.b	ENSGT00940000154344.a	ENSGT00940000153299.c.a.b	ENSGT00940000160515	ENSGT00390000017980	ENSGT00940000160946	ENSGT00390000006832	ENSGT00940000155374
Cricetinae	ANCESTRAL SPECIES	29	ENSGT00940000162313	ENSGT00940000159516	ENSGT00940000156974	ENSGT00940000158878	ENSGT00390000004226	ENSGT00940000162359	ENSGT00940000162721	ENSGT00940000154972.fb	ENSGT00700000106222	ENSGT00940000154972.eb.b.a.a	ENSGT00940000160971	ENSGT00410000025802.g.b.q.b	ENSGT00860000136220	ENSGT00940000161248	ENSGT00390000000062.x.b.l.a	ENSGT00950000183189.a.b.b ##22	ENSGT00950000182974.a.a.a.a	ENSGT00940000156803	ENSGT00390000012182	ENSGT00940000158388	ENSGT00940000161825	ENSGT00730000111366	ENSGT00940000157029	ENSGT00940000153669.b	ENSGT00940000154344.a	ENSGT00940000153299.c.a.b	ENSGT00940000160515	ENSGT00390000017980	ENSGT00940000160946	ENSGT00390000006832	ENSGT00940000155374
Chinese hamster chok1gshd	MODERN SPECIES	16	Mcf2 (ENSCGRG00001021302)	Atp11c (ENSCGRG00001020356)	Gm7073 (ENSCGRG00001022592)	Sox3 (ENSCGRG00001011737)	Ldoc1 (ENSCGRG00001009400)	Magec2 (ENSCGRG00001021825)	Gm6760 (ENSCGRG00001016891)	Magea9 (ENSCGRG00001005254)	Slitrk4 (ENSCGRG00001005530)	Ctag2 (ENSCGRG00001024950)	4930447F04Rik (ENSCGRG00001021811)	Slitrk2 (ENSCGRG00001010877)	ENSCGRG00001016997	ENSCGRG00001000104	ENSCGRG00001021550	Fmr1 (ENSCGRG00001012567) ##22	Aff2 (ENSCGRG00001012965)	Ids (ENSCGRG00001002360)	Eola1 (ENSCGRG00001014157)	Tmem185a (ENSCGRG00001025064)	ENSCGRG00001018034	ENSCGRG00001013662	Mamld1 (ENSCGRG00001000251)	Mtm1 (ENSCGRG00001024851)	Mtmr1 (ENSCGRG00001000727)	Cd99l2 (ENSCGRG00001011321)	Hmgb3 (ENSCGRG00001015455)	Gpr50 (ENSCGRG00001014176)	VMA21 (ENSCGRG00001018865)	Fate1 (ENSCGRG00001018187)	Prrg3 (ENSCGRG00001015221)
Golden Hamster	DUPLICATION
Golden Hamster	MODERN SPECIES	260																ENSMAUG00000000336 ##22
Golden Hamster	MODERN SPECIES	823														ENSMAUG00000009117	ENSMAUG00000008582	ENSMAUG00000005814 ##22	ENSMAUG00000002322	ENSMAUG00000002038	Aff2 (ENSMAUG00000015604)	Ids (ENSMAUG00000013501)
Cricetidae_B	ANCESTRAL SPECIES	28	ENSGT00940000159516	ENSGT00940000156974	ENSGT00940000158878	ENSGT00390000002886.b.b	ENSGT00940000162359	ENSGT00940000164798	ENSGT00940000162721	ENSGT00700000106038.A	ENSGT00940000154972.fb	ENSGT00700000106222	ENSGT00940000154972.eb.b.a.a	ENSGT00940000160971	ENSGT00410000025802.g.b.q.b	ENSGT00860000136220	ENSGT00940000161248	ENSGT00950000183189.a.b.b ##22	ENSGT00950000182974.a.a.a.a	ENSGT00940000156803	ENSGT00390000012182	ENSGT00940000158388	ENSGT00730000111366	ENSGT00940000157029	ENSGT00940000153669.b	ENSGT00940000154344.a	ENSGT00940000153299.c.a.b	ENSGT00940000160515	ENSGT00390000017980	ENSGT01050000246733	ENSGT00940000160946	ENSGT00390000006832	ENSGT00940000155374
Prairie vole	MODERN SPECIES	142													4930447F04Rik (ENSMOCG00000000394)	Slitrk2 (ENSMOCG00000002229)	ENSMOCG00000006594	Fmr1 (ENSMOCG00000005190) ##22	ENSMOCG00000000123	ENSMOCG00000007736
Northern American deer mouse	MODERN SPECIES	94																Fmr1 (ENSPEMG00000017439) ##22
Primates	ANCESTRAL SPECIES	23	ENSGT00940000153425.a.a.b.b	ENSGT00940000153425.b	ENSGT00940000163390	ENSGT00940000162539	ENSGT00940000160788	ENSGT00940000163347	ENSGT00940000159516	ENSGT00940000156974	ENSGT00940000158878	ENSGT00390000004226	ENSGT00390000002886.b.b	ENSGT00940000162359	ENSGT00940000162721	ENSGT00940000160971	ENSGT00940000161248	ENSGT00950000183189.a.b.b ##22	ENSGT00390000007953	ENSGT00950000182974.a.a.a.a	ENSGT00970000197053	ENSGT00940000156803	ENSGT00940000163633	ENSGT00940000158388	ENSGT00940000161825	ENSGT00390000012182	ENSGT00730000111366	ENSGT00940000157029	ENSGT00940000153669.b	ENSGT00940000154344.a	ENSGT00940000153299.c.b.b.b	ENSGT00940000153299.d.v.a	ENSGT00940000160515
Strepsirrhini	ANCESTRAL SPECIES	76															ENSGT00910000146020	ENSGT00950000183189.a.b.b ##22	ENSGT00950000182974.a.a.a.a	ENSGT00940000156803
Lemuriformes	ANCESTRAL SPECIES	53	ENSGT01100000263512.b.b.b	ENSGT00390000009902	ENSGT00530000063353.b	ENSGT01070000253816.a.b	ENSGT00940000158723	ENSGT00940000153425.a.b	ENSGT00940000160788	ENSGT00940000162864	ENSGT00940000163347	ENSGT00940000159516	ENSGT00940000156974	ENSGT00940000158878	ENSGT00390000004226	ENSGT00940000164798	ENSGT00940000162721	ENSGT00950000183189.a.b.b ##22	ENSGT00910000146020	ENSGT00950000182974.a.a.a.a	ENSGT00940000156803
Lemuriformes_a	ANCESTRAL SPECIES	321															ENSGT00910000146020	ENSGT00950000183189.a.b.b ##22	ENSGT00390000007953
Coquerels sifaka	MODERN SPECIES	1048			ENSPCOG00000013349	F9 (ENSPCOG00000021350)	MCF2 (ENSPCOG00000017797)	ATP11C (ENSPCOG00000016658)	CXorf66 (ENSPCOG00000016018)	ENSPCOG00000021671	LDOC1 (ENSPCOG00000026405)	ENSPCOG00000025982	ENSPCOG00000010819	SLITRK4 (ENSPCOG00000001878)	ENSPCOG00000026333	ENSPCOG00000022948	ENSPCOG00000023359	FMR1 (ENSPCOG00000028651) ##22	ENSPCOG00000028627	AFF2 (ENSPCOG00000013963)	ENSPCOG00000021033	ENSPCOG00000027307	IDS (ENSPCOG00000027114)
Greater bamboo lemur	MODERN SPECIES	727															ENSPSMG00000001251	FMR1 (ENSPSMG00000000944) ##22	ENSPSMG00000000715
Mouse lemur	MODERN SPECIES	169	ENSMICG00000048125	ENSMICG00000034505	ZNF75D (ENSMICG00000005209)	ENSMICG00000031062	ENSMICG00000035619	CT55 (ENSMICG00000047795)	ZNF449 (ENSMICG00000003164)	ENSMICG00000043469	ENSMICG00000031214	INTS6L (ENSMICG00000014196)	ENSMICG00000047091	SLC9A6 (ENSMICG00000011746)	ENSMICG00000009342	MAP7D3 (ENSMICG00000037426)	ADGRG4 (ENSMICG00000035091)	FMR1 (ENSMICG00000000838) ##22	ENSMICG00000045581	ENSMICG00000032523	ENSMICG00000004052	AFF2 (ENSMICG00000011580)	ENSMICG00000036932	ENSMICG00000030676	ENSMICG00000037019	IDS (ENSMICG00000002745)	ENSMICG00000045504	ENSMICG00000032768	ENSMICG00000047230	ENSMICG00000033654	ENSMICG00000045027	ENSMICG00000047372	ENSMICG00000029869
Bushbaby	MODERN SPECIES	346																FMR1 (ENSOGAG00000013061) ##22	AFF2 (ENSOGAG00000016333)	IDS (ENSOGAG00000007604)	ENSOGAG00000024943
Haplorrhini	ANCESTRAL SPECIES	33	ENSGT00940000153425.a.a.b.b	ENSGT00940000153425.b	ENSGT00940000163390	ENSGT00940000162539	ENSGT00940000160788	ENSGT00940000163347	ENSGT00940000159516	ENSGT00940000156974	ENSGT00940000158878	ENSGT00390000004226	ENSGT00390000002886.b.b	ENSGT00940000162359	ENSGT00940000162721	ENSGT00940000160971	ENSGT00940000161248	ENSGT00950000183189.a.b.b ##22	ENSGT00390000007953	ENSGT00950000182974.a.a.a.a	ENSGT00970000197053	ENSGT00940000156803	ENSGT00940000158388	ENSGT00940000163633	ENSGT00940000165994	ENSGT00940000161825	ENSGT00390000012182	ENSGT00730000111366	ENSGT00940000157029	ENSGT00940000153669.b	ENSGT00940000154344.a	ENSGT00940000153299.c.b.b.b	ENSGT00940000153299.d.v.a
Tarsier	MODERN SPECIES	2955																FMR1 (ENSTSYG00000014392) ##22
Simiiformes	ANCESTRAL SPECIES	9	ENSGT00940000159516	ENSGT00940000156974	ENSGT00940000158878	ENSGT00390000004226	ENSGT00390000002886.b.b	ENSGT00940000162359	ENSGT00940000162721	ENSGT00910000146818	ENSGT00940000164981	ENSGT00940000164535	ENSGT00940000163956	ENSGT00940000160971	ENSGT00940000164738	ENSGT00940000161248	ENSGT00510000055407	ENSGT00950000183189.a.b.b ##22	ENSGT00390000007953	ENSGT00950000182974.a.a.a.a	ENSGT00970000197053	ENSGT00940000156803	ENSGT00940000158388	ENSGT00940000163633	ENSGT00940000165994	ENSGT00940000161825	ENSGT00390000012182	ENSGT00730000111366	ENSGT00940000157029	ENSGT00940000153669.b	ENSGT00940000154344.a	ENSGT00940000153299.c.b.b.b	ENSGT00940000153299.d.v.a
Platyrrhini	ANCESTRAL SPECIES	42	ENSGT00940000159516	ENSGT00940000156974	ENSGT00940000158878	ENSGT00390000004226	ENSGT00390000002886.b.b	ENSGT00940000162359	ENSGT00940000162721	ENSGT00940000164981	ENSGT00940000164535	ENSGT00940000163956.a.a	ENSGT00940000160971	ENSGT00940000163956.b	ENSGT00940000164738	ENSGT00940000161248	ENSGT00510000055407	ENSGT00950000183189.a.b.b ##22	ENSGT00390000007953	ENSGT00950000182974.a.a.a.a	ENSGT00940000156803	ENSGT00390000012182	ENSGT00940000161825	ENSGT00940000165994	ENSGT00940000163633	ENSGT00940000158388	ENSGT00940000164167	ENSGT00730000111366	ENSGT00940000157029	ENSGT00940000153669.b	ENSGT00940000154344.a	ENSGT00940000153299.d.v.a	ENSGT00940000160515
Mas night monkey	MODERN SPECIES	1229													SLITRK2 (ENSANAG00000018916)	ENSANAG00000024700	ENSANAG00000034827	FMR1 (ENSANAG00000026715) ##22	FMR1NB (ENSANAG00000029333)	AFF2 (ENSANAG00000023509)	ENSANAG00000009320	IDS (ENSANAG00000029668)	ENSANAG00000022415	ENSANAG00000031481	TMEM185A (ENSANAG00000028488)	ENSANAG00000021783
Cebidae	ANCESTRAL SPECIES	27	ENSGT00940000158878	ENSGT00390000004226	ENSGT00390000002886.b.b	ENSGT00940000162359	ENSGT00940000162721	ENSGT00940000163956.a.a	ENSGT00940000164981	ENSGT00940000164535	ENSGT00940000163956.a.b	ENSGT00940000160971	ENSGT00940000164738.b	ENSGT00940000163956.b	ENSGT00940000164738.a	ENSGT00940000161248	ENSGT00510000055407	ENSGT00950000183189.a.b.b ##22	ENSGT00390000007953	ENSGT00950000182974.a.a.a.a	ENSGT00940000156803	ENSGT00390000012182	ENSGT00940000161825	ENSGT00940000165994	ENSGT00940000163633	ENSGT00940000158388	ENSGT00940000164167	ENSGT00730000111366	ENSGT00940000157029	ENSGT00940000153669.b	ENSGT00910000147788	ENSGT00940000154344.a	ENSGT00940000153299.d.v.a
Marmoset	MODERN SPECIES	78	ENSCJAG00000082101	ENSCJAG00000008338	ENSCJAG00000072609	ENSCJAG00000069732	ENSCJAG00000069623	ENSCJAG00000039147	ENSCJAG00000062154	ENSCJAG00000083411	ENSCJAG00000063948	ENSCJAG00000055806	ENSCJAG00000071453	SLITRK2 (ENSCJAG00000005992)	ENSCJAG00000084196	ENSCJAG00000064398	ENSCJAG00000086074	FMR1 (ENSCJAG00000003925) ##22	ENSCJAG00000049119	AFF2 (ENSCJAG00000000061)	ENSCJAG00000084004	ENSCJAG00000079254	IDS (ENSCJAG00000000073)	ENSCJAG00000067463	ENSCJAG00000023322	ENSCJAG00000004097	ENSCJAG00000075434	ENSCJAG00000075916	ENSCJAG00000085048	ENSCJAG00000072760	ENSCJAG00000083945	MAMLD1 (ENSCJAG00000004077)	MTM1 (ENSCJAG00000004040)
Cebidae_a	ANCESTRAL SPECIES	137									ENSGT00940000164981	ENSGT00940000164535	ENSGT00940000163956.a.a	ENSGT00940000160971	ENSGT00940000164738.a	ENSGT00940000161248	ENSGT00510000055407	ENSGT00950000183189.a.b.b ##22	ENSGT00390000007953	ENSGT00950000182974.a.a.a.a	ENSGT00940000156803
Bolivian squirrel monkey	MODERN SPECIES	152						ENSSBOG00000034528	ENSSBOG00000028654	ENSSBOG00000032098	ENSSBOG00000023205	SLITRK4 (ENSSBOG00000011515)	ENSSBOG00000028384	ENSSBOG00000026820	ENSSBOG00000025014	SLITRK2 (ENSSBOG00000014161)	ENSSBOG00000006758	FMR1 (ENSSBOG00000026623) ##22	ENSSBOG00000030685	ERRFI1 (ENSSBOG00000019344)	AFF2 (ENSSBOG00000020604)	ENSSBOG00000004475	IDS (ENSSBOG00000017176)
Capuchin	MODERN SPECIES	504																FMR1 (ENSCCAG00000021737) ##22	FMR1NB (ENSCCAG00000020669)	AFF2 (ENSCCAG00000025994)
Catarrhini	ANCESTRAL SPECIES	12	ENSGT00390000004226	ENSGT00390000002886.b.b	ENSGT00940000162359	ENSGT00940000162721	ENSGT00940000164981	ENSGT00940000164535.b	ENSGT00940000164535.a	ENSGT00940000165112	ENSGT00940000163956.c	ENSGT00940000160971	ENSGT00940000163956.d	ENSGT00940000164738	ENSGT00940000161248	ENSGT00510000055407	ENSGT00850000133588	ENSGT00950000183189.a.b.b ##22	ENSGT00390000007953	ENSGT00910000148734	ENSGT00950000182974.a.a.a.a	ENSGT00970000197053	ENSGT00940000156803	ENSGT00940000158388	ENSGT00940000163633	ENSGT00940000165994	ENSGT00940000165348	ENSGT00940000161825.c	ENSGT00390000012182	ENSGT00730000111366	ENSGT00940000157029	ENSGT00940000153669.b	ENSGT00940000154344.a
Hominoidea	ANCESTRAL SPECIES	29	ENSGT00940000162359	ENSGT00390000013647	ENSGT01010000223978	ENSGT00940000162721	ENSGT00940000164981	ENSGT00940000164535.b	ENSGT00940000164535.a	ENSGT00940000165112	ENSGT00940000163956.c	ENSGT00940000160971	ENSGT00940000163956.d	ENSGT00940000164738	ENSGT00940000161248	ENSGT00510000055407	ENSGT00850000133588	ENSGT00950000183189.a.b.b ##22	ENSGT00390000007953	ENSGT00910000148734	ENSGT00950000182974.a.a.a.a	ENSGT00970000197053	ENSGT00940000156803	ENSGT00940000164167	ENSGT00940000158388	ENSGT00940000163633	ENSGT00940000165994	ENSGT00940000165348	ENSGT00940000161825.c	ENSGT00390000012182	ENSGT00540000073886	ENSGT00390000009760.d	ENSGT00940000153239.B.j.a
Hominidae	ANCESTRAL SPECIES	8	ENSGT00390000013647	ENSGT01010000223978	ENSGT00910000146818	ENSGT00940000164981	ENSGT00940000164535.b	ENSGT00940000164535.a	ENSGT00940000165112	ENSGT00940000163956.c	ENSGT00940000160971	ENSGT00940000163956.d	ENSGT00940000164738.e	ENSGT00940000161248	ENSGT00510000055407	ENSGT00850000133588	ENSGT00910000146770	ENSGT00950000183189.a.b.b ##22	ENSGT00390000007953	ENSGT00910000148734	ENSGT00950000182974.a.a.a.a	ENSGT00970000197053	ENSGT00940000156803	ENSGT00940000164167	ENSGT00940000158388	ENSGT00940000163633	ENSGT00940000165994	ENSGT00940000165348	ENSGT00940000161825.c	ENSGT00390000012182	ENSGT00540000073886	ENSGT00390000009760.d	ENSGT00940000153239.B.j.a
Homo/Pan/Gorilla group	ANCESTRAL SPECIES	9	ENSGT00390000002886.b.b	ENSGT00940000162359	ENSGT00390000013647	ENSGT01010000223978	ENSGT00910000146818	ENSGT00940000164981	ENSGT00940000164535.b	ENSGT00940000164535.a	ENSGT00940000165112	ENSGT00940000163956.c	ENSGT00940000160971	ENSGT00940000163956.d	ENSGT00940000164738.e	ENSGT00940000161248	ENSGT00510000055407	ENSGT00950000183189.a.b.b ##22	ENSGT00390000007953	ENSGT00390000018324.f	ENSGT00950000182974.a.a.a.a	ENSGT00940000156803.g.b	ENSGT00970000197053	ENSGT00940000156803.g.a	ENSGT00390000012182	ENSGT00940000161825.c	ENSGT00940000165348	ENSGT00940000165994	ENSGT00940000163633	ENSGT00940000158388	ENSGT00940000164167	ENSGT00540000073886	ENSGT00390000009760.d
Gorilla	MODERN SPECIES	523	ENSGGOG00000037930	ENSGGOG00000013898	ENSGGOG00000041264	ENSGGOG00000042700	ENSGGOG00000026272	ENSGGOG00000002221	ENSGGOG00000008654	ENSGGOG00000037757	MAGEC3 (ENSGGOG00000024624)	ENSGGOG00000037743	MAGEC2 (ENSGGOG00000001664)	ENSGGOG00000024051	SPANXN3 (ENSGGOG00000008690)	SLITRK4 (ENSGGOG00000026538)	ENSGGOG00000040180	FMR1 (ENSGGOG00000010373) ##22	FMR1NB (ENSGGOG00000011460)	ENSGGOG00000022472	AFF2 (ENSGGOG00000010543)	ENSGGOG00000006912	ENSGGOG00000036241	ENSGGOG00000040386	ENSGGOG00000022043	ENSGGOG00000022734	TMEM185A (ENSGGOG00000024268)	MAGEA11 (ENSGGOG00000027734)	ENSGGOG00000022770	ENSGGOG00000039658	ENSGGOG00000022151	ENSGGOG00000026303	ENSGGOG00000016675
Homo/Pan group	ANCESTRAL SPECIES	9	ENSGT00390000004226	ENSGT00390000002886.b.b	ENSGT00940000162359	ENSGT00730000111796	ENSGT00910000146818	ENSGT00940000164981	ENSGT00940000164535.b	ENSGT00940000164535.a	ENSGT00940000165112	ENSGT00940000163956.c	ENSGT00940000160971	ENSGT00940000163956.d	ENSGT00940000164738.e	ENSGT00940000161248	ENSGT00510000055407	ENSGT00950000183189.a.b.b ##22	ENSGT00390000007953	ENSGT00390000018324.f	ENSGT00950000182974.a.a.a.a	ENSGT00970000197053	ENSGT00940000156803.g.a	ENSGT00390000012182	ENSGT00940000161825.c	ENSGT00940000165348	ENSGT00940000165994	ENSGT00940000163633	ENSGT00940000158388	ENSGT00940000164167	ENSGT00540000073886	ENSGT00390000009760.d	ENSGT00940000153239.B.j.a
Human	MODERN SPECIES	1827	SPANXA1 (ENSG00000198021)	SPANXA2 (ENSG00000203926)	SPANXD (ENSG00000196406)	MAGEC3 (ENSG00000165509)	MAGEC1 (ENSG00000155495)	MAGEC2 (ENSG00000046774)	SPANXN4 (ENSG00000189326)	SPANXN3 (ENSG00000189252)	SLITRK4 (ENSG00000179542)	SPANXN2 (ENSG00000268988)	UBE2NL (ENSG00000276380)	SPANXN1 (ENSG00000203923)	SLITRK2 (ENSG00000185985)	CXorf51B (ENSG00000235699)	CXorf51A (ENSG00000224440)	FMR1 (ENSG00000102081) ##22	FMR1NB (ENSG00000176988)	AFF2 (ENSG00000155966)	ENSG00000287585	IDS (ENSG00000010404)	ENSG00000241489	EOLA1 (ENSG00000197620)	HSFX3 (ENSG00000283697)	MAGEA9B (ENSG00000267978)	HSFX2 (ENSG00000268738)	TMEM185A (ENSG00000269556)	MAGEA11 (ENSG00000185247)	HSFX1 (ENSG00000171116)	MAGEA9 (ENSG00000123584)	MAGEA8 (ENSG00000156009)	EOLA2 (ENSG00000197021)
Pan	ANCESTRAL SPECIES	6	ENSGT00940000153147.m.a.a.a.a.b.a.a.a	ENSGT00390000002886.b.b	ENSGT00940000162359	ENSGT00730000111796	ENSGT00910000146818	ENSGT00940000164981	ENSGT00940000164535.b	ENSGT00940000164535.a	ENSGT00940000165112	ENSGT00940000163956.c	ENSGT00940000160971	ENSGT00940000163956.d	ENSGT00530000063646.b.v.b	ENSGT00940000161248	ENSGT00510000055407	ENSGT00950000183189.a.b.b ##22	ENSGT00390000007953	ENSGT00390000018324.f	ENSGT00950000182974.a.a.a.a	ENSGT00940000156803.g.a	ENSGT00940000165348	ENSGT00940000165994	ENSGT00940000163633	ENSGT00940000158388	ENSGT00940000164167	ENSGT00940000161825.c	ENSGT00390000012182	ENSGT00540000073886	ENSGT00390000009760.d	ENSGT00940000153239.B.j.a	ENSGT00730000111366
Chimpanzee	MODERN SPECIES	972	ENSPTRG00000022341	MAGEC2 (ENSPTRG00000028182)	ENSPTRG00000022342	SPANXN3 (ENSPTRG00000049779)	SLITRK4 (ENSPTRG00000028181)	ENSPTRG00000047088	SPANXN2 (ENSPTRG00000032493)	UBE2NL (ENSPTRG00000028180)	ENSPTRG00000043973	SPANXN1 (ENSPTRG00000052448)	ENSPTRG00000023037	ENSPTRG00000051875	ENSPTRG00000047380	ENSPTRG00000043109	ENSPTRG00000049129	FMR1 (ENSPTRG00000022349) ##22	FMR1NB (ENSPTRG00000022350)	ENSPTRG00000042813	ENSPTRG00000044524	AFF2 (ENSPTRG00000022353)	IDS (ENSPTRG00000051038)	ENSPTRG00000050308	MAGEA11 (ENSPTRG00000022358)	MAGEA9 (ENSPTRG00000044086)	TMEM185A (ENSPTRG00000046347)	ENSPTRG00000022359	ENSPTRG00000050162	MAGEA8 (ENSPTRG00000051529)	ENSPTRG00000042941	ENSPTRG00000049979	ENSPTRG00000022357
Bonobo	MODERN SPECIES	369	CXorf66 (ENSPPAG00000038036)	ENSPPAG00000037228	ENSPPAG00000023819	ENSPPAG00000025131	ENSPPAG00000026521	ENSPPAG00000030721	ENSPPAG00000026388	MAGEC2 (ENSPPAG00000026474)	ENSPPAG00000036672	SPANXN3 (ENSPPAG00000038428)	SLITRK4 (ENSPPAG00000013354)	ENSPPAG00000041875	ENSPPAG00000042792	SLITRK2 (ENSPPAG00000026296)	ENSPPAG00000024208	FMR1 (ENSPPAG00000041836) ##22	FMR1NB (ENSPPAG00000032015)	ENSPPAG00000038877	ENSPPAG00000043764	AFF2 (ENSPPAG00000040251)	IDS (ENSPPAG00000039933)	ENSPPAG00000032708	TMEM185A (ENSPPAG00000041974)	MAGEA11 (ENSPPAG00000029720)	ENSPPAG00000025248	ENSPPAG00000033335	ENSPPAG00000040929	ENSPPAG00000043892	ENSPPAG00000043936	ENSPPAG00000044034	MTM1 (ENSPPAG00000036663)
Orangutan	MODERN SPECIES	242	ATP11C (ENSPPYG00000020781)	CXorf66 (ENSPPYG00000020782)	SOX3 (ENSPPYG00000020784)	ENSPPYG00000020786	ENSPPYG00000038810	ENSPPYG00000020788	ENSPPYG00000020923	MAGEC2 (ENSPPYG00000020790)	ENSPPYG00000020791	ENSPPYG00000031195	SLITRK4 (ENSPPYG00000020792)	UBE2NL (ENSPPYG00000020793)	SLITRK2 (ENSPPYG00000020795)	ENSPPYG00000037692	ENSPPYG00000033432	FMR1 (ENSPPYG00000020797) ##22	FMR1NB (ENSPPYG00000020798)	ENSPPYG00000020799	AFF2 (ENSPPYG00000020800)	ENSPPYG00000040118	IDS (ENSPPYG00000020802)	ENSPPYG00000020803	ENSPPYG00000032611	ENSPPYG00000020804	ENSPPYG00000032567	ENSPPYG00000036522	ENSPPYG00000033696	ENSPPYG00000030759	ENSPPYG00000020908	MAGEA8 (ENSPPYG00000020811)	ENSPPYG00000030750
Gibbon	MODERN SPECIES	449	MCF2 (ENSNLEG00000003068)	ATP11C (ENSNLEG00000003317)	CXorf66 (ENSNLEG00000003353)	ENSNLEG00000027108	SOX3 (ENSNLEG00000018830)	ENSNLEG00000034744	LDOC1 (ENSNLEG00000002160)	ENSNLEG00000001381	ENSNLEG00000032077	ENSNLEG00000035725	SLITRK4 (ENSNLEG00000034309)	ENSNLEG00000033978	SLITRK2 (ENSNLEG00000013244)	ENSNLEG00000027177	ENSNLEG00000013267	FMR1 (ENSNLEG00000013269) ##22	ENSNLEG00000034229	ENSNLEG00000032474	ENSNLEG00000032792	AFF2 (ENSNLEG00000013346)	IDS (ENSNLEG00000013469)	ENSNLEG00000013483	TMEM185A (ENSNLEG00000013487)	MAGEA11 (ENSNLEG00000013500)	MAGEA8 (ENSNLEG00000013517)	ENSNLEG00000018298	ENSNLEG00000034935	ENSNLEG00000031926	ENSNLEG00000013566	ENSNLEG00000034343	ENSNLEG00000013570
Cercopithecidae	ANCESTRAL SPECIES	19	ENSGT00390000004226	ENSGT00390000002886.b.b	ENSGT00940000162359	ENSGT00940000162721	ENSGT00940000164981	ENSGT00940000164535.b	ENSGT00940000164535.a	ENSGT00940000165112	ENSGT00940000163956.c.b	ENSGT00940000160971	ENSGT00940000163956.d	ENSGT00530000063646.b.v.b	ENSGT00940000161248	ENSGT00510000055407	ENSGT00850000133588	ENSGT00950000183189.a.b.b ##22	ENSGT00390000007953	ENSGT00910000148734	ENSGT00950000182974.a.a.a.a	ENSGT00970000197053	ENSGT00940000156803	ENSGT00940000158388	ENSGT00940000163633	ENSGT00940000165994	ENSGT00940000165348	ENSGT00940000161825.c	ENSGT00390000012182	ENSGT00540000073886	ENSGT00390000009760.d	ENSGT00730000111366	ENSGT00940000157029
Cercopithecinae	ANCESTRAL SPECIES	13	ENSGT00390000004226	ENSGT00390000002886.b.b	ENSGT00940000162359	ENSGT00940000162721	ENSGT00940000164981	ENSGT00940000164535.b	ENSGT00940000164535.a	ENSGT00940000165112	ENSGT00940000163956.c.b	ENSGT00940000160971	ENSGT00940000163956.d	ENSGT00530000063646.b.v.b	ENSGT00940000161248	ENSGT00510000055407	ENSGT00850000133588	ENSGT00950000183189.a.b.b ##22	ENSGT00390000007953	ENSGT00910000148734	ENSGT00950000182974.a.a.a.a	ENSGT00970000197053	ENSGT00940000156803	ENSGT00940000158388	ENSGT00940000163633	ENSGT00940000165994	ENSGT00940000165348	ENSGT00940000161825.c	ENSGT00390000012182.ab	ENSGT00540000073886	ENSGT00390000009760.d	ENSGT00940000161825.d	ENSGT00390000012182.`b
Vervet Monkey	MODERN SPECIES	203	ENSCSAG00000000290	LDOC1 (ENSCSAG00000000289)	ENSCSAG00000007328	MAGEC1 (ENSCSAG00000007324)	ENSCSAG00000007320	MAGEC2 (ENSCSAG00000000288)	SPANXN4 (ENSCSAG00000007309)	ENSCSAG00000007303	SLITRK4 (ENSCSAG00000000287)	ENSCSAG00000007297	ENSCSAG00000000286	ENSCSAG00000000285	ENSCSAG00000007290	SLITRK2 (ENSCSAG00000000284)	ENSCSAG00000000283	FMR1 (ENSCSAG00000007281) ##22	FMR1NB (ENSCSAG00000007271)	AFF2 (ENSCSAG00000007248)	IDS (ENSCSAG00000007199)	MAGEA11 (ENSCSAG00000007193)	TMEM185A (ENSCSAG00000007189)	ENSCSAG00000007182	ENSCSAG00000000282	MAGEA8 (ENSCSAG00000000530)	ENSCSAG00000007176	MAMLD1 (ENSCSAG00000007173)	MTM1 (ENSCSAG00000007161)	MTMR1 (ENSCSAG00000007129)	CD99L2 (ENSCSAG00000007121)	GPR50 (ENSCSAG00000007114)	ENSCSAG00000007104
Cercopithecinae_a	ANCESTRAL SPECIES	11	ENSGT00390000004226	ENSGT00390000002886.b.b	ENSGT00940000162359	ENSGT00390000013647	ENSGT01010000223978	ENSGT00940000164535.b.b	ENSGT00940000164535.a	ENSGT00940000165112	ENSGT00940000163956.c.b	ENSGT00940000160971	ENSGT00940000163956.d	ENSGT00530000063646.b.v.b	ENSGT00940000161248	ENSGT00950000182878.b.a.c.a.a.b.i.a	ENSGT00850000133588	ENSGT00950000183189.a.b.b ##22	ENSGT00390000007953	ENSGT00910000148734	ENSGT00950000182974.a.a.a.a	ENSGT00970000197053	ENSGT00940000156803	ENSGT00940000158388	ENSGT00940000163633	ENSGT00940000165994	ENSGT00940000165348	ENSGT00940000161825.c	ENSGT00390000012182.ab	ENSGT00540000073886	ENSGT00390000009760.d	ENSGT00940000161825.d	ENSGT00390000012182.`b
Macaca	ANCESTRAL SPECIES	13	ENSGT00890000139472.a.b	ENSGT00940000162721	ENSGT00940000164981	ENSGT00940000164535.b.a	ENSGT00940000164535.b.b	ENSGT00940000164535.a	ENSGT00940000165112	ENSGT00940000163956.c.b	ENSGT00940000160971	ENSGT00390000012976.c.b.b.b.a.a.a	ENSGT00940000163956.c.a	ENSGT00940000164738.d	ENSGT00940000161248	ENSGT00950000182878.b.a.c.a.a.b.i.a	ENSGT00850000133588	ENSGT00950000183189.a.b.b ##22	ENSGT00390000007953	ENSGT00910000148734	ENSGT00950000182974.a.a.a.a	ENSGT00970000197053	ENSGT00940000156803	ENSGT00390000012182.ab	ENSGT00940000161825.c	ENSGT00940000165348	ENSGT00940000165994	ENSGT00940000163633	ENSGT00940000158388	ENSGT00950000182841.b.a.a.b.a.a.a.b	ENSGT00940000161825.d	ENSGT00390000012182.`b	ENSGT00390000009760.d
Pig-tailed macaque	MODERN SPECIES	115								SPANXN4 (ENSMNEG00000028813)	SPANXN3 (ENSMNEG00000042901)	SLITRK4 (ENSMNEG00000025856)	ENSMNEG00000030111	ENSMNEG00000029139	SLITRK2 (ENSMNEG00000012473)	ENSMNEG00000017805	ENSMNEG00000035418	FMR1 (ENSMNEG00000024342) ##22	FMR1NB (ENSMNEG00000036711)	ENSMNEG00000036630	AFF2 (ENSMNEG00000035909)	IDS (ENSMNEG00000030343)	ENSMNEG00000034749	ENSMNEG00000034300	ENSMNEG00000031361	TMEM185A (ENSMNEG00000040474)
Macaca_a	ANCESTRAL SPECIES	11	ENSGT00940000158878	ENSGT00390000004226	ENSGT00940000162359	ENSGT01100000263539.b.b.b.b.b.a.b.a.a.b.b.b	ENSGT00390000013647	ENSGT01040000240559.b.a.b.a.b.a.a	ENSGT00940000162721	ENSGT00940000164535.a	ENSGT01040000240559.a.a.a.a	ENSGT00940000165112	ENSGT00940000163956.c.b	ENSGT00940000160971	ENSGT00390000012976.c.b.b.b.a.a.a.b	ENSGT00940000161248	ENSGT00850000133588	ENSGT00950000183189.a.b.b ##22	ENSGT00390000007953	ENSGT00910000148734	ENSGT00950000182974.a.a.a.a	ENSGT00970000197053	ENSGT00940000156803	ENSGT01100000263539.a.a.b.b.a.b	ENSGT00940000170471.A.a.b	ENSGT00390000012182.ab	ENSGT00940000161825.c	ENSGT00940000158388	ENSGT00940000163633	ENSGT00940000165994	ENSGT00940000165348	ENSGT00950000182841.b.a.a.b.a.a.a.b	ENSGT00390000012182.`b
Rhesus	MODERN SPECIES	327	ENSMMUG00000017517	ENSMMUG00000055949	ENSMMUG00000032328	ENSMMUG00000064028	ENSMMUG00000059983	MAGEC2 (ENSMMUG00000016642)	ENSMMUG00000055642	SPANXN4 (ENSMMUG00000004438)	SPANXN2 (ENSMMUG00000001114)	SLITRK4 (ENSMMUG00000058341)	ENSMMUG00000041712	SPANXN (ENSMMUG00000018026)	SLITRK2 (ENSMMUG00000009719)	ENSMMUG00000060199	ENSMMUG00000049003	FMR1 (ENSMMUG00000015814) ##22	FMR1NB (ENSMMUG00000039691)	ENSMMUG00000059560	AFF2 (ENSMMUG00000000466)	IDS (ENSMMUG00000000671)	ENSMMUG00000053538	ENSMMUG00000032367	ENSMMUG00000006801	ENSMMUG00000060931	ENSMMUG00000007059	ENSMMUG00000002887	ENSMMUG00000051189	ENSMMUG00000057638	MAGEA8 (ENSMMUG00000046702)	EOLA2 (ENSMMUG00000061075)	ENSMMUG00000056351
Crab-eating macaque	MODERN SPECIES	175	ENSMFAG00000060567	ENSMFAG00000058294	SPANXN4 (ENSMFAG00000003443)	ENSMFAG00000058596	SPANXN3 (ENSMFAG00000035745)	SLITRK4 (ENSMFAG00000029666)	SPANXN2 (ENSMFAG00000043556)	ENSMFAG00000030134	ENSMFAG00000027138	ENSMFAG00000054570	ENSMFAG00000031635	ENSMFAG00000053441	ENSMFAG00000061545	SLITRK2 (ENSMFAG00000030304)	ENSMFAG00000032729	FMR1 (ENSMFAG00000000241) ##22	FMR1NB (ENSMFAG00000036881)	ENSMFAG00000003429	AFF2 (ENSMFAG00000044807)	ENSMFAG00000053111	IDS (ENSMFAG00000037097)	ENSMFAG00000053185	ENSMFAG00000054856	ENSMFAG00000062619	ENSMFAG00000056673	TMEM185A (ENSMFAG00000040133)	ENSMFAG00000002138	MAGEA8 (ENSMFAG00000003115)	ENSMFAG00000001225	ENSMFAG00000047287	MAMLD1 (ENSMFAG00000000232)
Cercopithecinae_b	ANCESTRAL SPECIES	45	ENSGT00940000162359	ENSGT00390000013647	ENSGT00890000139472.a.b	ENSGT00940000162721	ENSGT00910000146818	ENSGT00940000164981	ENSGT00940000164535.a	ENSGT00940000165112	ENSGT00940000163956.c.b	ENSGT00940000160971	ENSGT00940000163956.d	ENSGT00940000164738.d	ENSGT00940000161248	ENSGT00950000182878.b.a.c.a.a.b.i.a	ENSGT00850000133588	ENSGT00950000183189.a.b.b ##22	ENSGT00390000007953	ENSGT00910000148734	ENSGT00390000018324.f	ENSGT00950000182974.a.a.a.a	ENSGT00970000197053	ENSGT00940000156803	ENSGT00940000158388	ENSGT00940000163633	ENSGT00940000165994	ENSGT00940000165348	ENSGT00940000161825.c	ENSGT00390000012182.ab	ENSGT00540000073886	ENSGT00390000009760.d	ENSGT00730000111366
Olive baboon	MODERN SPECIES	792	ENSPANG00000034008	ENSPANG00000040826	ENSPANG00000016851	ENSPANG00000017786	MAGEC2 (ENSPANG00000051336)	SPANXN4 (ENSPANG00000013571)	ENSPANG00000046479	SLITRK4 (ENSPANG00000005820)	SPANXN3 (ENSPANG00000000098)	ENSPANG00000051175	ENSPANG00000017877	ENSPANG00000029618	SLITRK2 (ENSPANG00000011464)	ENSPANG00000045404	ENSPANG00000048224	ENSPANG00000018447 ##22	ENSPANG00000016635	ENSPANG00000032630	AFF2 (ENSPANG00000002926)	ENSPANG00000037367	ENSPANG00000042095	TMEM185A (ENSPANG00000013627)	ENSPANG00000004032	ENSPANG00000049817	MAGEA8 (ENSPANG00000026481)	ENSPANG00000044008	ENSPANG00000041171	ENSPANG00000014395	ENSPANG00000032660	MAMLD1 (ENSPANG00000008461)	MTM1 (ENSPANG00000009162)
Cercopithecinae_d	ANCESTRAL SPECIES	177							ENSGT00940000165112	ENSGT00940000163956.c.b	ENSGT00940000160971	ENSGT00940000163956.d	ENSGT00940000164738.c	ENSGT00940000164738.d	ENSGT00940000161248	ENSGT00950000182878.b.a.c.a.a.b.i.a	ENSGT00850000133588	ENSGT00950000183189.a.b.b ##22	ENSGT00390000007953	ENSGT00910000148734	ENSGT00390000018324.f	ENSGT00950000182974.a.a.a.a	ENSGT00940000156803	ENSGT00390000009760.d	ENSGT00540000073886	ENSGT00390000012182.ab	ENSGT00940000161825.c	ENSGT00940000165348
Sooty mangabey	MODERN SPECIES	232					SPANXN4 (ENSCATG00000035255)	SPANXN3 (ENSCATG00000028743)	SLITRK4 (ENSCATG00000043170)	SPANXN2 (ENSCATG00000034272)	ENSCATG00000015972	ENSCATG00000036408	ENSCATG00000044594	ENSCATG00000034306	ENSCATG00000038220	SLITRK2 (ENSCATG00000014801)	ENSCATG00000031232	FMR1 (ENSCATG00000038319) ##22	FMR1NB (ENSCATG00000039334)	ENSCATG00000013330	AFF2 (ENSCATG00000040342)	IDS (ENSCATG00000032457)	ENSCATG00000029715	ENSCATG00000030244	ENSCATG00000033817
Drill	MODERN SPECIES	1103											ENSMLEG00000039612	ENSMLEG00000032608	SLITRK2 (ENSMLEG00000004634)	ENSMLEG00000029792	ENSMLEG00000010101	FMR1 (ENSMLEG00000035664) ##22	FMR1NB (ENSMLEG00000029212)	ENSMLEG00000004941
Rhinopithecus	ANCESTRAL SPECIES	932																ENSGT00950000183189.a.b.b ##22	ENSGT00390000007953
Black snub-nosed monkey	MODERN SPECIES	2475																FMR1 (ENSRBIG00000028998) ##22	ENSRBIG00000004666
Golden snub-nosed monkey	MODERN SPECIES	1907																FMR1 (ENSRROG00000044396) ##22	FMR1NB (ENSRROG00000028763)
Laurasiatheria	ANCESTRAL SPECIES	26	ENSGT00940000160788	ENSGT00940000162864	ENSGT00940000162313	ENSGT00940000159516	ENSGT00940000156974	ENSGT00940000158878	ENSGT00390000004226	ENSGT00390000002886.b.b	ENSGT00940000162359	ENSGT00940000164798	ENSGT00940000162721	ENSGT00940000160971	ENSGT00940000161248	ENSGT00940000165847	ENSGT00910000146020	ENSGT00950000183189.a.b.b ##22	ENSGT00390000007953	ENSGT00950000182974.a.a.a.a	ENSGT00970000197053	ENSGT00940000156803	ENSGT00940000158388	ENSGT00940000163633	ENSGT00940000161825	ENSGT00390000012182	ENSGT00730000111366	ENSGT00940000157029	ENSGT00940000153669.b	ENSGT00940000154344.a	ENSGT00940000153299.d	ENSGT00940000160515	ENSGT00390000017980
Laurasiatheria_a	ANCESTRAL SPECIES	10	ENSGT00940000159516	ENSGT00940000156974	ENSGT00940000158878	ENSGT00390000004226	ENSGT00390000002886.b.b	ENSGT00940000162359	ENSGT01020000231229	ENSGT00940000164798	ENSGT00940000162721	ENSGT00940000160971	ENSGT00940000162864.a	ENSGT00940000161248	ENSGT00940000165847	ENSGT01090000261020.B	ENSGT00910000146020	ENSGT00950000183189.a.b.b ##22	ENSGT00390000007953	ENSGT00950000182974.a.a.a.a	ENSGT00970000197053	ENSGT00940000156803	ENSGT00940000163633	ENSGT00940000158388	ENSGT00940000161825	ENSGT00390000012182	ENSGT00730000111366	ENSGT00940000157029	ENSGT00940000153669.b	ENSGT00940000154344.a	ENSGT00940000153299.d	ENSGT00940000160515	ENSGT00390000017980
Laurasiatheria_b	ANCESTRAL SPECIES	10	ENSGT00940000162313	ENSGT00940000159516	ENSGT00940000156974	ENSGT00940000158878	ENSGT00390000004226	ENSGT00390000002886.b.b	ENSGT00940000162359	ENSGT01020000231229	ENSGT00940000164798	ENSGT00940000162721	ENSGT00940000160971	ENSGT00940000161248	ENSGT00940000165847	ENSGT01090000261020.B	ENSGT00910000146020	ENSGT00950000183189.a.b.b ##22	ENSGT00390000007953	ENSGT00950000182974.a.a.a.a	ENSGT00970000197053	ENSGT00940000156803	ENSGT00940000158388	ENSGT00940000163633	ENSGT00940000163823	ENSGT00940000161825	ENSGT00390000012182	ENSGT00730000111366	ENSGT00940000157029	ENSGT00940000153669.b	ENSGT00940000154344.a	ENSGT00940000153299.d	ENSGT00940000160515
Laurasiatheria_c	ANCESTRAL SPECIES	10	ENSGT01070000253816.a.b	ENSGT00940000158723	ENSGT00940000153425.a.a.b.b	ENSGT00940000163390	ENSGT00940000162539	ENSGT00940000160788	ENSGT00940000162864.b	ENSGT00940000163347	ENSGT00940000159516	ENSGT00940000156974	ENSGT00940000158878	ENSGT00940000160971	ENSGT00940000162864.a	ENSGT00940000161248	ENSGT00940000165847	ENSGT00950000183189.a.b.b ##22	ENSGT00390000007953	ENSGT00950000182974.a.a.a.a	ENSGT00970000197053	ENSGT00940000156803	ENSGT00390000012182	ENSGT00940000161825	ENSGT00940000163823	ENSGT00940000163633	ENSGT00940000158388	ENSGT00730000111366	ENSGT00940000157029	ENSGT00940000153669.b	ENSGT00940000154344.a	ENSGT00940000153299.d	ENSGT00940000160515
Equus	ANCESTRAL SPECIES	39	ENSGT00940000156974	ENSGT00940000158878	ENSGT00390000004226	ENSGT00390000002886.b.b	ENSGT00940000162359	ENSGT01020000231229	ENSGT00940000164798	ENSGT00940000162721	ENSGT00910000146818	ENSGT00940000160971	ENSGT00940000162864.a	ENSGT00390000008294.e.a.b	ENSGT00940000161248	ENSGT00940000165847	ENSGT01090000261020.B	ENSGT00950000183189.a.b.b ##22	ENSGT00390000007953	ENSGT00950000182974.a.a.a.a	ENSGT00970000197053	ENSGT00940000156803
Donkey	MODERN SPECIES	36	ENSEASG00005031103	ENSEASG00005030704	ENSEASG00005016078	ENSEASG00005016076	GPR50 (ENSEASG00005016074)	HMGB3 (ENSEASG00005016072)	CD99L2 (ENSEASG00005016192)	ENSEASG00005031885	ENSEASG00005016190	MTM1 (ENSEASG00005016189)	ENSEASG00005037607	ENSEASG00005037549	ENSEASG00005026082	ENSEASG00005027415	ENSEASG00005018393	ENSEASG00005014017 ##22	ENSEASG00005030672	ENSEASG00005036996	ENSEASG00005035623	ENSEASG00005031491	ENSEASG00005034087	ENSEASG00005032017	ENSEASG00005028959	ENSEASG00005030235	ENSEASG00005030711	ENSEASG00005030910	IDS (ENSEASG00005019569)	ENSEASG00005019572	ENSEASG00005034078	ENSEASG00005013954	ENSEASG00005034581
Horse	MODERN SPECIES	480	MCF2 (ENSECAG00000007277)	ATP11C (ENSECAG00000005393)	ENSECAG00000034142	ENSECAG00000035913	ENSECAG00000057181	ENSECAG00000036414	LDOC1 (ENSECAG00000006527)	ENSECAG00000055823	SLITRK4 (ENSECAG00000006567)	ENSECAG00000006623	ENSECAG00000006641	SLITRK2 (ENSECAG00000020489)	ENSECAG00000034979	ENSECAG00000051078	ENSECAG00000045143	FMR1 (ENSECAG00000032767) ##22	ENSECAG00000031632	AFF2 (ENSECAG00000021132)	ENSECAG00000035680	IDS (ENSECAG00000033355)	ENSECAG00000042341	ENSECAG00000031526	ENSECAG00000000873	ENSECAG00000037420	ENSECAG00000031123	ENSECAG00000050746	ENSECAG00000013903	TMEM185A (ENSECAG00000009399)	ENSECAG00000047614	ENSECAG00000028384	ENSECAG00000041692
Chiroptera	ANCESTRAL SPECIES	48											ENSGT00940000160971	ENSGT00940000162313	ENSGT00940000162864.b	ENSGT00940000161248	ENSGT00940000165847	ENSGT00950000183189.a.b.b ##22	ENSGT00390000007953	ENSGT00950000182974.a.a.a.a	ENSGT00970000197053	ENSGT00940000156803	ENSGT00390000012182	ENSGT00940000161825	ENSGT00940000158388	ENSGT00940000163633	ENSGT00730000111366	ENSGT00940000157029	ENSGT00940000153669.b	ENSGT00940000154344.a	ENSGT00940000153299.d	ENSGT00940000160515	ENSGT00390000017980
Microchiroptera	ANCESTRAL SPECIES	45											ENSGT00940000160971	ENSGT00940000162313	ENSGT00940000162864.b	ENSGT00940000161248	ENSGT00940000165847	ENSGT00950000183189.a.b.b ##22	ENSGT00390000007953	ENSGT00950000182974.a.a.a.a	ENSGT00970000197053	ENSGT00940000156803	ENSGT00390000012182	ENSGT00940000161825	ENSGT00940000158388	ENSGT00730000111366	ENSGT00940000157029	ENSGT00940000153669.b	ENSGT00940000154344.a	ENSGT00940000153299.d	ENSGT00940000160515	ENSGT00390000017980	ENSGT00940000160946
Microbat	MODERN SPECIES	977											SLITRK4 (ENSMLUG00000001049)	ENSMLUG00000029760	SLITRK2 (ENSMLUG00000015168)	ENSMLUG00000027619	ENSMLUG00000027197	FMR1 (ENSMLUG00000000587) ##22	AFF2 (ENSMLUG00000010364)	ENSMLUG00000022730	IDS (ENSMLUG00000000061)	ENSMLUG00000003524	TMEM185A (ENSMLUG00000001319)	ENSMLUG00000026997	ENSMLUG00000016953	ENSMLUG00000026269	MAMLD1 (ENSMLUG00000005323)	ENSMLUG00000030480	MTM1 (ENSMLUG00000010836)	MTMR1 (ENSMLUG00000010872)	CD99L2 (ENSMLUG00000010903)	ENSMLUG00000010926	GPR50 (ENSMLUG00000012999)
Greater horseshoe bat	MODERN SPECIES		ENSRFEG00010000377	SOX3 (ENSRFEG00010000375)	ENSRFEG00010000355	ENSRFEG00010000341	LDOC1 (ENSRFEG00010000336)	ENSRFEG00010000327	ENSRFEG00010000320	ENSRFEG00010000310	SLITRK4 (ENSRFEG00010000289)	ENSRFEG00010000271	ENSRFEG00010000249	ENSRFEG00010000218	SLITRK2 (ENSRFEG00010000213)	ENSRFEG00010000203	ENSRFEG00010000180	FMR1 (ENSRFEG00010000166) ##22	ENSRFEG00010000124	AFF2 (ENSRFEG00010000110)	ENSRFEG00010000102	IDS (ENSRFEG00010000097)	ENSRFEG00010007482	ENSRFEG00010007446	TMEM185A (ENSRFEG00010007310)	ENSRFEG00010007238	ENSRFEG00010007196	ENSRFEG00010007158	ENSRFEG00010007124	MAMLD1 (ENSRFEG00010007103)	ENSRFEG00010007091	MTM1 (ENSRFEG00010007031)	MTMR1 (ENSRFEG00010006808)
Megabat	MODERN SPECIES	3734																FMR1 (ENSPVAG00000013386) ##22	ENSPVAG00000013388
Carnivora	ANCESTRAL SPECIES	11	ENSGT00940000163347	ENSGT00940000162313	ENSGT00940000159516	ENSGT00940000156974	ENSGT00940000158878	ENSGT00390000004226	ENSGT00390000002886.b.b	ENSGT00940000162359	ENSGT00940000164798	ENSGT00940000162721	ENSGT00940000160971	ENSGT00940000161248	ENSGT00940000165847	ENSGT01090000261020.B	ENSGT00910000146020	ENSGT00950000183189.a.b.b ##22	ENSGT00390000007953	ENSGT00950000182974.a.a.a.a	ENSGT00970000197053	ENSGT00940000156803	ENSGT00940000158388	ENSGT00940000163633	ENSGT00940000161825	ENSGT00390000012182	ENSGT00730000111366	ENSGT00940000157029	ENSGT00940000153669.b	ENSGT00940000154344.a	ENSGT00940000153299.d	ENSGT00940000160515	ENSGT00390000017980
Felidae	ANCESTRAL SPECIES	12	ENSGT00940000159516	ENSGT00940000156974	ENSGT00390000002517.a.b.b.d	ENSGT00940000158878	ENSGT00390000004226	ENSGT00390000002886.b.b	ENSGT00940000162359	ENSGT00730000111080.b.i.a	ENSGT00940000164798	ENSGT00940000162721	ENSGT00940000160971	ENSGT00940000165902.a.a	ENSGT00940000161248	ENSGT00940000165847	ENSGT00910000146020	ENSGT00950000183189.a.b.b ##22	ENSGT00950000182974.a.a.a.a	ENSGT00970000197053	ENSGT00940000156803	ENSGT00940000158388	ENSGT00940000161825	ENSGT00390000012182	ENSGT00730000111366	ENSGT00940000157029	ENSGT00940000153669.b	ENSGT00940000154344.a	ENSGT00940000153299.d	ENSGT00940000160515	ENSGT00390000017980	ENSGT00530000064765	ENSGT00940000160946
Panthera	ANCESTRAL SPECIES	52	ENSGT00940000159516	ENSGT00940000156974	ENSGT00390000002517.a.b.b.d	ENSGT00940000158878	ENSGT00390000004226	ENSGT00390000002886.b.b	ENSGT00940000162359	ENSGT00730000111080.b.i.a	ENSGT00940000164798	ENSGT00940000162721	ENSGT00940000160971	ENSGT00940000165902.a.a	ENSGT00940000161248	ENSGT00940000165847	ENSGT00910000146020	ENSGT00950000183189.a.b.b ##22	ENSGT00950000182974.a.a.a.a	ENSGT00970000197053	ENSGT00940000156803	ENSGT00390000012182	ENSGT00940000161825
Panthera_a	ANCESTRAL SPECIES	61	ENSGT00940000159516	ENSGT00940000156974	ENSGT00390000002517.a.b.b.d	ENSGT00940000158878	ENSGT00390000004226	ENSGT00390000002886.b.b	ENSGT00940000162359	ENSGT00730000111080.b.i.a	ENSGT00940000164798	ENSGT00940000162721	ENSGT00940000160971	ENSGT00940000165902.a.a	ENSGT00940000161248	ENSGT00940000165847	ENSGT00910000146020	ENSGT00950000183189.a.b.b ##22	ENSGT00950000182974.a.a.a.a	ENSGT00970000197053	ENSGT00940000156803	ENSGT00390000012182	ENSGT00940000161825
lion	MODERN SPECIES	88	ENSPLOG00000008035	F9 (ENSPLOG00000007909)	MCF2 (ENSPLOG00000007144)	ATP11C (ENSPLOG00000006614)	ENSPLOG00000006507	ENSPLOG00000006490	SOX3 (ENSPLOG00000006478)	ENSPLOG00000006454	ENSPLOG00000006437	LDOC1 (ENSPLOG00000006428)	SLITRK4 (ENSPLOG00000006403)	ENSPLOG00000006380	SLITRK2 (ENSPLOG00000006369)	ENSPLOG00000006349	ENSPLOG00000006302	FMR1 (ENSPLOG00000006246) ##22	AFF2 (ENSPLOG00000006146)	ENSPLOG00000006094	IDS (ENSPLOG00000006056)	GABRQ (ENSPLOG00000005996)	ENSPLOG00000005970	GABRA3 (ENSPLOG00000005934)	GABRE (ENSPLOG00000005892)	ENSPLOG00000005849	CNGA2 (ENSPLOG00000005820)	FATE1 (ENSPLOG00000005800)	PRRG3 (ENSPLOG00000005764)	VMA21 (ENSPLOG00000010799)	GPR50 (ENSPLOG00000010766)	CD99L2 (ENSPLOG00000010732)	ENSPLOG00000010702
leopard	MODERN SPECIES	180															ENSPPRG00000018746	FMR1 (ENSPPRG00000018962) ##22	AFF2 (ENSPPRG00000019488)	IDS (ENSPPRG00000019646)	ENSPPRG00000019770
Tiger	MODERN SPECIES	41																FMR1 (ENSPTIG00000019115) ##22	AFF2 (ENSPTIG00000018890)	IDS (ENSPTIG00000018755)	ENSPTIG00000018596	ENSPTIG00000018476
Cat	MODERN SPECIES	252	ATP11C (ENSFCAG00000012377)	ENSFCAG00000047263	ENSFCAG00000028841	ENSFCAG00000053714	ENSFCAG00000052174	ENSFCAG00000044640	ENSFCAG00000046108	ENSFCAG00000023837	LDOC1 (ENSFCAG00000024705)	SLITRK4 (ENSFCAG00000040385)	ENSFCAG00000051885	ENSFCAG00000031974	ENSFCAG00000052728	ENSFCAG00000024773	ENSFCAG00000049061	FMR1 (ENSFCAG00000007228) ##22	ENSFCAG00000038940	ENSFCAG00000051077	ENSFCAG00000037477	AFF2 (ENSFCAG00000004117)	ENSFCAG00000049417	IDS (ENSFCAG00000023644)	ENSFCAG00000051761	TMEM185A (ENSFCAG00000024483)	ENSFCAG00000041336	ENSFCAG00000005477	ENSFCAG00000004331	MTM1 (ENSFCAG00000004332)	MTMR1 (ENSFCAG00000031053)	CD99L2 (ENSFCAG00000012721)	ENSFCAG00000039909
Caniformia	ANCESTRAL SPECIES	22	ENSGT00940000162864.b	ENSGT00940000162313	ENSGT00940000159516	ENSGT00940000156974	ENSGT00940000158878	ENSGT00390000004226	ENSGT00390000002886.b.b	ENSGT00940000162359	ENSGT00940000164798	ENSGT00940000162721	ENSGT00940000160971	ENSGT00940000161248	ENSGT00940000165847	ENSGT01090000261020.B	ENSGT00910000146020	ENSGT00950000183189.a.b.b ##22	ENSGT00390000007953	ENSGT00950000182974.a.a.a.a	ENSGT00970000197053	ENSGT00940000156803	ENSGT00940000158388	ENSGT00940000163633	ENSGT00940000163823.f	ENSGT00940000161825	ENSGT00390000012182	ENSGT00730000111366	ENSGT00940000157029	ENSGT00940000153669.b	ENSGT00940000154344.a	ENSGT00940000153299.d	ENSGT00940000160515
Caniformia_b	ANCESTRAL SPECIES	27	ENSGT00940000162864.b	ENSGT00940000163347	ENSGT00940000162313	ENSGT00940000159516	ENSGT00940000156974	ENSGT00940000158878	ENSGT00390000004226	ENSGT00390000002886.b.b	ENSGT00940000162359	ENSGT00940000164798	ENSGT00940000162721	ENSGT00940000160971	ENSGT00940000161248	ENSGT00940000165847	ENSGT01090000261020.B	ENSGT00950000183189.a.b.b ##22	ENSGT00390000007953	ENSGT00950000182974.a.a.a.a	ENSGT00970000197053	ENSGT00940000156803	ENSGT00940000158388	ENSGT00940000163633	ENSGT00940000163823.f	ENSGT00940000161825	ENSGT00390000012182	ENSGT00730000111366	ENSGT00940000157029	ENSGT00940000153669.b	ENSGT00940000154344.a	ENSGT00940000153299.d	ENSGT00940000160515
Ursidae	ANCESTRAL SPECIES	45	ENSGT00940000160788.a	ENSGT00940000162864.b	ENSGT00940000163347	ENSGT00940000159516	ENSGT00940000156974	ENSGT00940000158878	ENSGT00390000004226	ENSGT00390000002886.b.b	ENSGT00940000162359	ENSGT00940000164798	ENSGT00940000162721	ENSGT00940000160971	ENSGT00940000161248	ENSGT00940000165847	ENSGT01090000261020.B	ENSGT00950000183189.a.b.b ##22	ENSGT00390000007953	ENSGT00950000182974.a.a.a.a	ENSGT00970000197053	ENSGT00940000156803	ENSGT00940000158388	ENSGT00940000163823.f.b	ENSGT00940000161825	ENSGT00390000012182	ENSGT00730000111366	ENSGT00940000157029	ENSGT00940000153669.b	ENSGT00940000154344.a	ENSGT00940000153299.d	ENSGT00940000160515	ENSGT00390000017980
Ursus	ANCESTRAL SPECIES	337															ENSGT00940000161248	ENSGT00950000183189.a.b.b ##22	ENSGT00390000007953
American black bear	MODERN SPECIES	63																FMR1 (ENSUAMG00000013787) ##22	ENSUAMG00000018616
Polar bear	MODERN SPECIES	168													SLITRK2 (ENSUMAG00000010291)	ENSUMAG00000010284	ENSUMAG00000010282	FMR1 (ENSUMAG00000009869) ##22	ENSUMAG00000009793	CNGA2 (ENSUMAG00000009790)	FATE1 (ENSUMAG00000009784)	PRRG3 (ENSUMAG00000009781)	VMA21 (ENSUMAG00000009766)	GPR50 (ENSUMAG00000009755)	HMGB3 (ENSUMAG00000009751)	ENSUMAG00000009742	MTMR1 (ENSUMAG00000009439)	MTM1 (ENSUMAG00000009419)
Giant Panda	MODERN SPECIES	2288	ENSAMEG00000019776	ENSAMEG00000029471	ENSAMEG00000016189	ENSAMEG00000016219	ATP11C (ENSAMEG00000016285)	ENSAMEG00000016314	ENSAMEG00000019782	SOX3 (ENSAMEG00000026516)	ENSAMEG00000026901	ENSAMEG00000020003	ENSAMEG00000019515	SLITRK2 (ENSAMEG00000019302)	ENSAMEG00000026817	ENSAMEG00000019220	ENSAMEG00000024160	FMR1 (ENSAMEG00000014996) ##22	ENSAMEG00000026576	AFF2 (ENSAMEG00000014934)	ENSAMEG00000030462	ENSAMEG00000014912	ENSAMEG00000009351	ENSAMEG00000024519	ENSAMEG00000018292	MTM1 (ENSAMEG00000017035)	MTMR1 (ENSAMEG00000017003)	CD99L2 (ENSAMEG00000016998)	HMGB3 (ENSAMEG00000016990)	GPR50 (ENSAMEG00000016987)	ENSAMEG00000028231	PRRG3 (ENSAMEG00000024898)	FATE1 (ENSAMEG00000016977)
Mustelinae	ANCESTRAL SPECIES	199													ENSGT00950000183198.c.a.a.a.a.e	ENSGT00940000161248	ENSGT00940000165847	ENSGT00950000183189.a.b.b ##22	ENSGT00390000007953	ENSGT00950000182974.a.a.a.a	ENSGT00940000156803
American mink	MODERN SPECIES	169												ENSNVIG00000018066	ENSNVIG00000018072	SLIK2 (ENSNVIG00000018084)	ENSNVIG00000018089	FMR1 (ENSNVIG00000018124) ##22	FMR1NB (ENSNVIG00000018389)	AFF2 (ENSNVIG00000018425)	IDS (ENSNVIG00000018535)
Ferret	MODERN SPECIES	425															ENSMPUG00000011495	FMR1 (ENSMPUG00000011485) ##22	ENSMPUG00000011480	AFF2 (ENSMPUG00000011473)	IDS (ENSMPUG00000011467)	ENSMPUG00000019307	ENSMPUG00000011462
Canidae	ANCESTRAL SPECIES	50	ENSGT00940000156974	ENSGT00940000158878	ENSGT00390000004226	ENSGT00390000002886.b.b	ENSGT00940000162359	ENSGT00940000164798.d	ENSGT00940000162721	ENSGT00940000164798.c	ENSGT00940000160971	ENSGT00390000004380.e.a	ENSGT00940000165902	ENSGT00940000161248	ENSGT00940000165847	ENSGT01090000261020.B	ENSGT00910000146020	ENSGT00950000183189.a.b.b ##22	ENSGT00390000007953	ENSGT00950000182974.a.a.a.a	ENSGT00970000197053	ENSGT00940000156803	ENSGT00390000012182	ENSGT00940000161825	ENSGT00940000163823.e.b.a.a.b.a.b.a	ENSGT00940000158388	ENSGT00730000111366	ENSGT00940000157029	ENSGT00940000153669.b	ENSGT00940000154344.a	ENSGT00940000153299.d	ENSGT00940000160515	ENSGT00390000017980
Red fox	MODERN SPECIES	75	CUNHXorf66 (ENSVVUG00000021515)	ENSVVUG00000000104	LDOC1 (ENSVVUG00000000153)	ENSVVUG00000000181	ENSVVUG00000000288	SLITRK4 (ENSVVUG00000000328)	ENSVVUG00000000346	ENSVVUG00000000396	ENSVVUG00000000415	ENSVVUG00000000464	SLITRK2 (ENSVVUG00000000503)	ENSVVUG00000000672	ENSVVUG00000000690	ENSVVUG00000000712	ENSVVUG00000000716	FMR1 (ENSVVUG00000000753) ##22	ENSVVUG00000000782	AFF2 (ENSVVUG00000000805)	IDS (ENSVVUG00000000855)
Canis_lupus	ANCESTRAL SPECIES	22	ENSGT00940000156974	ENSGT00940000158878	ENSGT00390000004226	ENSGT00390000002886.b.b	ENSGT00940000162359	ENSGT00940000164798.d	ENSGT00940000162721	ENSGT00940000164798.c	ENSGT00940000160971	ENSGT00390000004380.e.a.b	ENSGT00940000161248	ENSGT00940000165847	ENSGT01090000261020.B	ENSGT00890000139436.A.b.d	ENSGT00910000146020	ENSGT00950000183189.a.b.b ##22	ENSGT00390000007953	ENSGT00950000182974.a.a.a.a	ENSGT00970000197053	ENSGT00940000156803	ENSGT00390000012182	ENSGT00940000161825	ENSGT00940000163823.e.b.a.a.b.a.b.a	ENSGT00940000158388	ENSGT00730000111366	ENSGT00940000157029	ENSGT00940000153669.b	ENSGT00940000154344.a	ENSGT00940000153299.d	ENSGT00940000160515	ENSGT00390000017980
Dog	MODERN SPECIES	144	ATP11C (ENSCAFG00845030103)	ENSCAFG00845030392	SOX3 (ENSCAFG00845030422)	ENSCAFG00845030462	ENSCAFG00845019387	SLITRK4 (ENSCAFG00845019492)	ENSCAFG00845019585	ENSCAFG00845019607	ENSCAFG00845019668	SLITRK2 (ENSCAFG00845019739)	ENSCAFG00845020221	ENSCAFG00845020271	ENSCAFG00845020302	ENSCAFG00845020521	ENSCAFG00845020570	FMR1 (ENSCAFG00845020694) ##22	ENSCAFG00845021006	AFF2 (ENSCAFG00845021181)	ENSCAFG00845021679	IDS (ENSCAFG00845021782)	CXHXorf40B (ENSCAFG00845022002)	ENSCAFG00845022075	ENSCAFG00845022106	ENSCAFG00845022166	ENSCAFG00845022257	ENSCAFG00845022285	ENSCAFG00845022298	ENSCAFG00845022345	ENSCAFG00845022395	ENSCAFG00845022615	ENSCAFG00845022636
Dingo	MODERN SPECIES	383	ATP11C (ENSCAFG00020024462)	ENSCAFG00020024450	ENSCAFG00020024444	SOX3 (ENSCAFG00020024439)	ENSCAFG00020024437	LDOC1 (ENSCAFG00020024434)	ENSCAFG00020024432	SLITRK4 (ENSCAFG00020024429)	ENSCAFG00020024425	SLITRK2 (ENSCAFG00020024421)	ENSCAFG00020024392	ENSCAFG00020024390	ENSCAFG00020024379	ENSCAFG00020024375	ENSCAFG00020024371	FMR1 (ENSCAFG00020024366) ##22	ENSCAFG00020024364	AFF2 (ENSCAFG00020024359)	IDS (ENSCAFG00020024358)	ENSCAFG00020024357	ENSCAFG00020024356	ENSCAFG00020024355	ENSCAFG00020024351	ENSCAFG00020024346	ENSCAFG00020024341	MAMLD1 (ENSCAFG00020024331)	ENSCAFG00020024330	MTM1 (ENSCAFG00020024301)	MTMR1 (ENSCAFG00020023414)	CD99L2 (ENSCAFG00020023327)	ENSCAFG00020023322
Artiodactyla	ANCESTRAL SPECIES	9	ENSGT00940000159516	ENSGT00940000156974	ENSGT00940000158878	ENSGT00390000004226	ENSGT00390000002886.b.b	ENSGT00940000162359	ENSGT01020000231229	ENSGT00940000164798	ENSGT00940000162721	ENSGT00940000160971	ENSGT00940000162864.a	ENSGT00940000161248	ENSGT00940000165847	ENSGT01090000261020.B	ENSGT00910000146020	ENSGT00950000183189.a.b.b ##22	ENSGT00390000007953	ENSGT00950000182974.a.a.a.a	ENSGT00940000156803	ENSGT00940000163633	ENSGT00940000158388	ENSGT00910000144363	ENSGT00940000161825	ENSGT00390000012182	ENSGT00730000111366	ENSGT00940000157029	ENSGT00940000153669.b	ENSGT00940000154344.a	ENSGT00940000153299.d	ENSGT00940000160515	ENSGT00390000017980
Suina	ANCESTRAL SPECIES	7	ENSGT00940000162313	ENSGT00940000159516	ENSGT00940000156974	ENSGT00940000158878	ENSGT00390000004226	ENSGT00390000002886.b.b	ENSGT00940000162359	ENSGT00940000164798	ENSGT00390000010165.i.b.b.a	ENSGT00940000160971	ENSGT00940000162864.a	ENSGT00940000161248	ENSGT00940000165847	ENSGT01090000261020.B	ENSGT00910000146020	ENSGT00950000183189.a.b.b ##22	ENSGT00950000182974.a.a.a.a	ENSGT00940000156803	ENSGT00940000158388	ENSGT00910000144363.a	ENSGT00940000163633	ENSGT00940000161825	ENSGT00390000012182	ENSGT00730000111366	ENSGT00940000157029	ENSGT00940000153669.b	ENSGT00940000154344.a	ENSGT00940000153299.d	ENSGT00940000160515	ENSGT00390000017980	ENSGT01090000261020.A
Chacoan peccary	MODERN SPECIES	854														ENSCWAG00000012208	ENSCWAG00000012159	FMR1 (ENSCWAG00000011848) ##22	AFF2 (ENSCWAG00000010778)	IDS (ENSCWAG00000010685)
Pig	MODERN SPECIES	300	SOX3 (ENSSSCG00000022501)	ENSSSCG00000061577	ENSSSCG00000047266	ENSSSCG00000054933	LDOC1 (ENSSSCG00000060354)	ENSSSCG00000047642	ENSSSCG00000012720	SLITRK4 (ENSSSCG00000022091)	ENSSSCG00000042052	ENSSSCG00000057502	ENSSSCG00000032608	SLITRK2 (ENSSSCG00000012724)	ENSSSCG00000051076	ENSSSCG00000057764	ENSSSCG00000035587	FMR1 (ENSSSCG00000012727) ##22	AFF2 (ENSSSCG00000012730)	IDS (ENSSSCG00000012731)	ENSSSCG00000040446	ENSSSCG00000032730	ENSSSCG00000040153	TMEM185A (ENSSSCG00000012739)	ENSSSCG00000012740	ENSSSCG00000036958	ENSSSCG00000041318	ENSSSCG00000012733	ENSSSCG00000012732	ENSSSCG00000037995	MAMLD1 (ENSSSCG00000012741)	MTM1 (ENSSSCG00000012742)	MTMR1 (ENSSSCG00000012743)
Artiodactyla_a	ANCESTRAL SPECIES	9	ENSGT00940000159516	ENSGT00940000156974	ENSGT00940000158878	ENSGT00390000004226	ENSGT00390000002886.b.b	ENSGT00940000162359	ENSGT01020000231229	ENSGT00940000164798	ENSGT00940000162721	ENSGT00940000160971	ENSGT00940000162864.a	ENSGT00940000161248	ENSGT00940000165847	ENSGT01090000261020.B	ENSGT00910000146020	ENSGT00950000183189.a.b.b ##22	ENSGT00390000007953	ENSGT00950000182974.a.a.a.a	ENSGT00940000156803	ENSGT00940000163633	ENSGT00940000158388	ENSGT00910000144363	ENSGT00940000161825	ENSGT00390000012182	ENSGT00730000111366	ENSGT00940000157029	ENSGT00940000153669.b	ENSGT00940000154344.a	ENSGT00940000153299.d	ENSGT00940000160515	ENSGT00390000017980
Camelidae	ANCESTRAL SPECIES	51	ENSGT01070000253816.a.b	ENSGT00940000158723	ENSGT00940000153425.a.a.b.b	ENSGT00940000163390	ENSGT00940000162539	ENSGT00940000160788	ENSGT00940000163347	ENSGT00940000162313	ENSGT00940000159516	ENSGT00940000156974	ENSGT00940000158878	ENSGT00390000004226	ENSGT00940000160971	ENSGT00940000161248	ENSGT00940000165847	ENSGT00950000183189.a.b.b ##22	ENSGT00950000182974.a.a.a.a	ENSGT00940000156803
Alpaca	MODERN SPECIES	6260																FMR1 (ENSVPAG00000008700) ##22
Arabian camel	MODERN SPECIES	204	RBMX (ENSCDRG00005011282)	ENSCDRG00005011435	GPR101 (ENSCDRG00005011581)	ZIC3 (ENSCDRG00005011602)	ENSCDRG00005011767	F9 (ENSCDRG00005012097)	MCF2 (ENSCDRG00005012278)	ATP11C (ENSCDRG00005013683)	ENSCDRG00005014959	ENSCDRG00005015221	LDOC1 (ENSCDRG00005015290)	ENSCDRG00005015300	SLITRK4 (ENSCDRG00005015308)	SLITRK2 (ENSCDRG00005015316)	ENSCDRG00005015357	FMR1 (ENSCDRG00005015464) ##22	AFF2 (ENSCDRG00005015694)	IDS (ENSCDRG00005016081)	ENSCDRG00005016321	TMEM185A (ENSCDRG00005016368)	ENSCDRG00005016609	ENSCDRG00005016635	ENSCDRG00005016673	MTM1 (ENSCDRG00005016791)	MTMR1 (ENSCDRG00005016901)	CD99L2 (ENSCDRG00005017098)	HMGB3 (ENSCDRG00005017221)	GPR50 (ENSCDRG00005017269)	ENSCDRG00005017295	PRRG3 (ENSCDRG00005017332)	FATE1 (ENSCDRG00005017356)
Artiodactyla_b	ANCESTRAL SPECIES	19	ENSGT00940000156974	ENSGT00940000158878	ENSGT00390000004226	ENSGT00390000002886.b.b	ENSGT00940000162359	ENSGT01020000231229	ENSGT00940000164798	ENSGT00940000162721	ENSGT00940000160971	ENSGT00950000183087.A.b.a	ENSGT00940000162864.a	ENSGT00940000161248	ENSGT00940000165847	ENSGT01090000261020.B	ENSGT00910000146020	ENSGT00950000183189.a.b.b ##22	ENSGT00390000007953	ENSGT00950000182974.a.a.a.a	ENSGT00940000156803	ENSGT00940000163633	ENSGT00940000158388	ENSGT00910000144363	ENSGT00940000161825	ENSGT00390000012182	ENSGT00730000111366	ENSGT00940000157029	ENSGT00940000153669.b	ENSGT00940000154344.a	ENSGT00940000153299.d	ENSGT00940000160515	ENSGT00390000017980
Cetacea	ANCESTRAL SPECIES	19	ENSGT00940000158878	ENSGT00530000064050.j	ENSGT00390000004226	ENSGT00390000002886.b.b	ENSGT00940000162359	ENSGT01020000231229	ENSGT00940000164798	ENSGT00550000074618.a.b.`b	ENSGT00560000078638	ENSGT00940000162721	ENSGT00940000160971	ENSGT00950000183087.A.b.a	ENSGT00940000162864.a	ENSGT00940000161248	ENSGT00940000165847	ENSGT00950000183189.a.b.b ##22	ENSGT00390000007953	ENSGT00950000182974.a.a.a.a	ENSGT00940000156803	ENSGT00940000163633	ENSGT00940000158388	ENSGT00910000144363	ENSGT01030000234522.C.b.e.a.a.a.a.a.b	ENSGT00940000153582.b.a.a.b	ENSGT00940000161825	ENSGT00390000012182	ENSGT00730000111366	ENSGT00940000157029	ENSGT00940000153669.b	ENSGT00940000154344.a	ENSGT00940000153299.d.q.a
Odontoceti	ANCESTRAL SPECIES	19	ENSGT00940000162864.b	ENSGT00940000163347	ENSGT00940000159516	ENSGT00940000156974	ENSGT00940000158878	ENSGT00530000064050.j	ENSGT00390000004226	ENSGT00390000002886.b.b	ENSGT00940000162359	ENSGT01010000223978	ENSGT00940000160971	ENSGT00950000183087.A.b.a.e	ENSGT00940000162864.a	ENSGT00940000161248	ENSGT00940000165847	ENSGT00950000183189.a.b.b ##22	ENSGT00390000007953	ENSGT00950000182974.a.a.a.a	ENSGT00940000156803	ENSGT00940000163633	ENSGT00940000158388	ENSGT00940000153582.b.a.a.b	ENSGT01030000234522.C.b.e.a.a.a.a.a.b	ENSGT00910000144363	ENSGT00940000161825	ENSGT00390000012182	ENSGT00730000111366	ENSGT00940000157029	ENSGT00940000153669.b	ENSGT00940000154344.a	ENSGT00940000153299.d.q.a
Odontoceti_a	ANCESTRAL SPECIES	21	ENSGT00940000162539	ENSGT00940000160788	ENSGT00940000162864.b	ENSGT00940000163347	ENSGT00940000159516	ENSGT00940000156974	ENSGT00940000158878	ENSGT00530000064050.j	ENSGT00390000004226	ENSGT00390000002886.b.b	ENSGT00940000162359	ENSGT01010000223978	ENSGT00940000160971	ENSGT00950000183087.A.b.a.e	ENSGT00940000161248	ENSGT00950000183189.a.b.b ##22	ENSGT00390000007953	ENSGT00950000182974.a.a.a.a	ENSGT00940000156803	ENSGT00390000012182	ENSGT00910000144363	ENSGT01030000234522.C.b.e.a.a.a.a.a.b	ENSGT00940000153582.b.a.a.b	ENSGT00940000163633	ENSGT00940000158388	ENSGT00730000111366	ENSGT00940000157029	ENSGT00940000153669.b.i	ENSGT00940000154344.a	ENSGT00940000153299.d.q.a	ENSGT00940000160515
Dolphin	MODERN SPECIES	4276																FMR1 (ENSTTRG00000000613) ##22	ENSTTRG00000000614
Odontoceti_b	ANCESTRAL SPECIES	17	ENSGT00940000160788	ENSGT00940000163347	ENSGT00940000159516	ENSGT00940000156974	ENSGT00940000158878	ENSGT00530000064050.j	ENSGT00390000004226	ENSGT00390000002886.b.b	ENSGT00940000162359	ENSGT01020000231229	ENSGT00940000164798	ENSGT00950000183375	ENSGT00940000160971	ENSGT00950000183087.A.b.a.e	ENSGT00940000161248	ENSGT00950000183189.a.b.b ##22	ENSGT00390000007953	ENSGT00950000182974.a.a.a.a	ENSGT00940000156803	ENSGT00390000012182	ENSGT00910000144363	ENSGT01030000234522.C.b.e.a.a.a.a.a.b	ENSGT00940000153582.b.a.a.b	ENSGT00940000163633	ENSGT00940000158388	ENSGT00730000111366	ENSGT00940000157029	ENSGT00940000153669.b.i	ENSGT00940000154344.a	ENSGT00940000153299.d.q.a	ENSGT00940000160515
Monodontidae	ANCESTRAL SPECIES	19	ENSGT00940000162864.b	ENSGT00940000162313	ENSGT00940000159516	ENSGT00940000156974	ENSGT00940000158878	ENSGT00530000064050.j	ENSGT00390000004226	ENSGT00390000002886.b.b	ENSGT00940000162359	ENSGT01020000231229	ENSGT00940000164798	ENSGT00950000183375	ENSGT00940000160971	ENSGT00950000183087.A.b.a.e	ENSGT00940000161248	ENSGT00950000183189.a.b.b ##22	ENSGT00390000007953	ENSGT00950000182974.a.a.a.a	ENSGT00940000156803	ENSGT00940000163633	ENSGT00940000158388	ENSGT00390000012182	ENSGT00730000111366	ENSGT00940000157029	ENSGT00940000153669.b.i	ENSGT00940000154344.a	ENSGT00390000006051.a.a.a.b.a.a.a	ENSGT00940000164950	ENSGT00940000153299.d.q.a	ENSGT00940000160515	ENSGT00390000017980.ob
Beluga whale	MODERN SPECIES		FGF13 (ENSDLEG00000001212)	ENSDLEG00000001192	F9 (ENSDLEG00000001177)	MCF2 (ENSDLEG00000001070)	ENSDLEG00000001046	ATP11C (ENSDLEG00000000892)	ENSDLEG00000000855	SOX3 (ENSDLEG00000000843)	ENSDLEG00000000822	ENSDLEG00000000818	ENSDLEG00000000805	LDOC1 (ENSDLEG00000000802)	SLITRK4 (ENSDLEG00000000783)	ENSDLEG00000000774	SLITRK2 (ENSDLEG00000000769)	FMR1 (ENSDLEG00000000712) ##22	ENSDLEG00000000683	AFF2 (ENSDLEG00000000636)	IDS (ENSDLEG00000000599)	CUNHXorf40A (ENSDLEG00000000594)	TMEM185A (ENSDLEG00000000557)	MAMLD1 (ENSDLEG00000000500)	MTM1 (ENSDLEG00000000445)	MTMR1 (ENSDLEG00000000418)	CD99L2 (ENSDLEG00000000368)	ENSDLEG00000000355	ENSDLEG00000000344	ENSDLEG00000000317	GPR50 (ENSDLEG00000000267)	VMA21 (ENSDLEG00000000251)	PRRG3 (ENSDLEG00000000233)
Narwhal	MODERN SPECIES	309	ENSMMNG00015016406	F9 (ENSMMNG00015016457)	MCF2 (ENSMMNG00015016750)	ATP11C (ENSMMNG00015018100)	ENSMMNG00015018741	ENSMMNG00015018772	ENSMMNG00015018792	SOX3 (ENSMMNG00015018809)	ENSMMNG00015018831	ENSMMNG00015018855	LDOC1 (ENSMMNG00015018872)	ENSMMNG00015018884	SLITRK4 (ENSMMNG00015018897)	ENSMMNG00015018909	SLITRK2 (ENSMMNG00015018926)	FMR1 (ENSMMNG00015019001) ##22	ENSMMNG00015019165	ENSMMNG00015019193	AFF2 (ENSMMNG00015019223)	IDS (ENSMMNG00015019300)	ENSMMNG00015019386	TMEM185A (ENSMMNG00015019419)	ENSMMNG00015019479	MAMLD1 (ENSMMNG00015019528)	MTM1 (ENSMMNG00015019552)	ENSMMNG00015019626	ENSMMNG00015019648	CD99L2 (ENSMMNG00015019669)	ENSMMNG00015019721	ENSMMNG00015019734	ENSMMNG00015019743
Vaquita	MODERN SPECIES	34	MCF2 (ENSPSNG00000013789)	ATP11C (ENSPSNG00000016149)	ENSPSNG00000016284	ENSPSNG00000016459	SOX3 (ENSPSNG00000016488)	ENSPSNG00000016506	ENSPSNG00000016567	ENSPSNG00000016628	ENSPSNG00000016676	LDOC1 (ENSPSNG00000016732)	SLITRK4 (ENSPSNG00000016771)	ENSPSNG00000016788	ENSPSNG00000016802	ENSPSNG00000016809	SLITRK2 (ENSPSNG00000016832)	FMR1 (ENSPSNG00000016888) ##22	ENSPSNG00000017140	AFF2 (ENSPSNG00000017260)	IDS (ENSPSNG00000017979)	ENSPSNG00000018067	ENSPSNG00000018172	ENSPSNG00000018220	ENSPSNG00000018257	ENSPSNG00000018315	ENSPSNG00000018346	ENSPSNG00000018397	ENSPSNG00000018426	ENSPSNG00000018487	ENSPSNG00000018540	ENSPSNG00000018595	ENSPSNG00000018638
Sperm whale	MODERN SPECIES	13	ATP11C (ENSPCTG00005015323)	ENSPCTG00005015600	ENSPCTG00005015642	ENSPCTG00005015719	SOX3 (ENSPCTG00005015742)	ENSPCTG00005015765	ENSPCTG00005015851	ENSPCTG00005015868	ENSPCTG00005015949	LDOC1 (ENSPCTG00005016029)	SLITRK4 (ENSPCTG00005016051)	ENSPCTG00005016060	ENSPCTG00005016093	SLITRK2 (ENSPCTG00005016146)	ENSPCTG00005016250	FMR1 (ENSPCTG00005016358) ##22	ENSPCTG00005016784	AFF2 (ENSPCTG00005016855)	ENSPCTG00005017037	TMEM185A (ENSPCTG00005017095)	ENSPCTG00005017259	ENSPCTG00005017287	MAMLD1 (ENSPCTG00005017336)	MTM1 (ENSPCTG00005017453)	MTMR1 (ENSPCTG00005017567)	CD99L2 (ENSPCTG00005017740)	ENSPCTG00005018302	ENSPCTG00005018331	HMGB3 (ENSPCTG00005018370)	ENSPCTG00005018393	GPR50 (ENSPCTG00005018437)
Blue whale	MODERN SPECIES	40	SLITRK4 (ENSBMSG00010020675)	ENSBMSG00010020683	ENSBMSG00010020693	ENSBMSG00010020705	ENSBMSG00010020713	ENSBMSG00010020716	TCEAL1 (ENSBMSG00010020720)	ENSBMSG00010020726	MORF4L2 (ENSBMSG00010020731)	ENSBMSG00010020745	TMEM31 (ENSBMSG00010020764)	PLP1 (ENSBMSG00010020777)	RAB9B (ENSBMSG00010020794)	ENSBMSG00010020811	SLITRK2 (ENSBMSG00010020817)	FMR1 (ENSBMSG00010020867) ##22	ENSBMSG00010020927	AFF2 (ENSBMSG00010020952)	ENSBMSG00010021002	ENSBMSG00010021009	IDS (ENSBMSG00010021024)	ENSBMSG00010021038	ENSBMSG00010021048	ENSBMSG00010021070	ENSBMSG00010021076	ENSBMSG00010021082	ENSBMSG00010021087	ENSBMSG00010021092	ENSBMSG00010021094	MAMLD1 (ENSBMSG00010021125)	MTM1 (ENSBMSG00010021136)
Pecora	ANCESTRAL SPECIES	28	ENSGT00940000159516	ENSGT00940000156974	ENSGT00940000158878	ENSGT00390000004226.b.b	ENSGT00390000004226.a	ENSGT00390000002886.b.b	ENSGT00940000162359	ENSGT00940000162721	ENSGT00390000004226.b.a	ENSGT00940000160971	ENSGT00940000162864.a.d.a	ENSGT00940000161248	ENSGT00940000165847	ENSGT01090000261020.B	ENSGT00910000146020	ENSGT00950000183189.a.b.b ##22	ENSGT00390000007953	ENSGT00950000182974.a.a.a.a	ENSGT00390000012692.j	ENSGT00940000156803	ENSGT00390000012182.j	ENSGT00940000161825.u	ENSGT00910000144363.g.a.a.a	ENSGT00940000161825.v.a.b	ENSGT00390000012182.i.a	ENSGT00940000161825.v.a.a.b	ENSGT00940000161825.v.a.a.a	ENSGT00910000144363.g.b	ENSGT00940000158388	ENSGT00910000144363.g.a.a.b.b	ENSGT00730000111366
Yarkand deer	MODERN SPECIES	1323	ENSCHYG00000018821	ENSCHYG00000018883	ENSCHYG00000018908	ENSCHYG00000019035	ENSCHYG00000019073	LDOC1 (ENSCHYG00000019098)	ENSCHYG00000019149	SLITRK4 (ENSCHYG00000019227)	ENSCHYG00000019271	ENSCHYG00000019320	ENSCHYG00000019396	ENSCHYG00000019441	ENSCHYG00000019503	SLITRK2 (ENSCHYG00000019590)	ENSCHYG00000019612	FMR1 (ENSCHYG00000019695) ##22	ENSCHYG00000020265	AFF2 (ENSCHYG00000020328)	ENSCHYG00000020683	IDS (ENSCHYG00000020778)	TMEM185A (ENSCHYG00000020977)	ENSCHYG00000021261	ENSCHYG00000021203	ENSCHYG00000021281	ENSCHYG00000021295	ENSCHYG00000021323	ENSCHYG00000021343	ENSCHYG00000021386	ENSCHYG00000021415	ENSCHYG00000021498	MTM1 (ENSCHYG00000021727)
Percora_a	ANCESTRAL SPECIES	30	ENSGT00940000159516	ENSGT00940000156974	ENSGT00940000158878	ENSGT00390000004226.b.b	ENSGT00390000004226.a	ENSGT00390000002886.b.b	ENSGT00940000162359	ENSGT00940000162721	ENSGT00390000004226.b.a	ENSGT00940000160971	ENSGT00940000162864.a.d.a	ENSGT00940000161248	ENSGT00940000165847	ENSGT01090000261020.B	ENSGT00910000146020	ENSGT00950000183189.a.b.b ##22	ENSGT00390000007953	ENSGT00950000182974.a.a.a.a	ENSGT00390000012692.j	ENSGT00940000156803	ENSGT00390000012182.j	ENSGT00940000161825.u	ENSGT00910000144363.g.a.b.a	ENSGT00940000158388	ENSGT00910000144363.g.a.a.b.b	ENSGT00910000144363.g.b	ENSGT00910000144363.g.a.a.b.a	ENSGT00730000111366	ENSGT00940000157029	ENSGT00940000153669.b	ENSGT00940000154344.a
Siberian musk deer	MODERN SPECIES	275														ENSMMSG00000011694	ENSMMSG00000011717	FMR1 (ENSMMSG00000011770) ##22
Bovidae	ANCESTRAL SPECIES	29	ENSGT00940000160971	ENSGT00950000183087.A.b.a	ENSGT00940000162864.a.c	ENSGT01030000234964.A.a.a	ENSGT00390000004226.b.a	ENSGT00940000162721	ENSGT00940000162359	ENSGT00390000002886.b.b	ENSGT00390000004226.a	ENSGT00390000004226.b.b	ENSGT01030000234964.A.a.b	ENSGT00940000161248	ENSGT00940000165847	ENSGT01090000261020.B	ENSGT00910000146020	ENSGT00950000183189.a.b.b ##22	ENSGT00390000007953	ENSGT00950000182974.a.a.a.a	ENSGT00390000012692.j	ENSGT00940000156803	ENSGT00390000012182.j	ENSGT00940000161825.u.a	ENSGT00910000144363.g.a.a.b.b	ENSGT00910000144363.g.b	ENSGT00940000158388	ENSGT00910000144363.g.a.a.b.a	ENSGT00730000111366	ENSGT00940000157029	ENSGT00940000153669.b	ENSGT00940000154344.a	ENSGT00940000153299.d
Caprinae	ANCESTRAL SPECIES	45												ENSGT01030000234964.A.a.b	ENSGT00940000161248	ENSGT00940000165847	ENSGT00910000146020	ENSGT00950000183189.a.b.b ##22	ENSGT00950000182974.a.a.a.a	ENSGT00390000012692.j	ENSGT00940000156803	ENSGT00390000012182.j	ENSGT00940000161825.u.a	ENSGT00910000144363.g.b.c	ENSGT00910000144363.g.b.d	ENSGT00910000144363.g.a.b.a	ENSGT00940000158388	ENSGT00910000144363.g.a.a.b.a	ENSGT00730000111366	ENSGT00940000157029	ENSGT00940000153669.b	ENSGT00940000154344.a	ENSGT00940000153299.d
Goat	MODERN SPECIES	45															ENSCHIG00000000442	FMR1 (ENSCHIG00000000198) ##22	ENSCHIG00000000156	ENSCHIG00000000125
Rambouillet Sheep	MODERN SPECIES	205	LDOC1 (ENSOARG00020013342)	ENSOARG00020013281	ENSOARG00020013185	ENSOARG00020013129	SLITRK4 (ENSOARG00020013061)	ENSOARG00020012945	TXNDC9 (ENSOARG00020012885)	EIF5B (ENSOARG00020012389)	AFF3 (ENSOARG00020011808)	ENSOARG00020011489	ENSOARG00020010994	ENSOARG00020010846	ENSOARG00020010675	SLITRK2 (ENSOARG00020010627)	ENSOARG00020010573	FMR1 (ENSOARG00020009782) ##22	AFF2 (ENSOARG00020009371)	ENSOARG00020009318	IDS (ENSOARG00020009046)	ENSOARG00020008994	ENSOARG00020008952	ENSOARG00020008940	ENSOARG00020008917	ENSOARG00020008886	TMEM185A (ENSOARG00020008708)	ENSOARG00020008690	ENSOARG00020008651	MTM1 (ENSOARG00020008485)	MTMR1 (ENSOARG00020007264)	CD99L2 (ENSOARG00020007113)	HMGB3 (ENSOARG00020007066)
Bovinae	ANCESTRAL SPECIES	42	ENSGT00940000162864.b	ENSGT00940000162313	ENSGT00940000159516	ENSGT00940000156974	ENSGT00940000158878	ENSGT00940000160971	ENSGT00950000183087.A.b.a	ENSGT00940000162864.a.c	ENSGT01030000234964.A.a.a	ENSGT00390000004226.b.a	ENSGT01030000234964.A.a.b	ENSGT00940000161248	ENSGT00940000165847	ENSGT01090000261020.B	ENSGT00910000146020	ENSGT00950000183189.a.b.b ##22	ENSGT00390000007953	ENSGT00950000182974.a.a.a.a	ENSGT00390000012692.j	ENSGT00940000156803	ENSGT00390000012182.j	ENSGT00940000161825.u.a	ENSGT00910000144363.g.b.b.a	ENSGT00940000158388	ENSGT00910000144363.g.a.a.b.a	ENSGT00730000111366	ENSGT00940000157029	ENSGT00940000153669.b	ENSGT00940000154344.a	ENSGT00940000153299.d	ENSGT00940000160515
American bison	MODERN SPECIES	1830																ENSBBBG00000020950 ##22
Bos	ANCESTRAL SPECIES	36	ENSGT00940000162864.b	ENSGT00940000162313	ENSGT00390000010165.i.b.a.b	ENSGT00940000159516	ENSGT00940000156974	ENSGT00940000158878	ENSGT00940000160971	ENSGT00950000183087.A.b.a	ENSGT00940000162864.a.c	ENSGT01030000234964.A.a.a.d	ENSGT01030000234964.A.a.b	ENSGT00940000161248	ENSGT00940000165847	ENSGT01090000261020.B	ENSGT00910000146020	ENSGT00950000183189.a.b.b ##22	ENSGT00390000007953	ENSGT00950000182974.a.a.a.a	ENSGT00390000012692.j	ENSGT00940000156803	ENSGT00390000012182.j	ENSGT00940000161825.u.a	ENSGT00910000144363.g.b.b.a.a	ENSGT00940000158388	ENSGT00910000144363.g.a.a.b.a.a	ENSGT00910000144363.g.a.a.b.a.b	ENSGT00730000111366	ENSGT00940000157029	ENSGT00940000153669.b	ENSGT00940000154344.a	ENSGT00940000153299.d
Bos_b	ANCESTRAL SPECIES	31	ENSGT00940000160625.k.b	ENSGT00390000004226.a.b.a	ENSGT00390000004226.a.a.a.a	ENSGT00390000004226.a.a.b	ENSGT00390000002886.b.b	ENSGT00940000162359	ENSGT00940000162721	ENSGT00910000144363.g.b.a.a.a	ENSGT00940000160971	ENSGT00950000183087.A.b.a	ENSGT00940000162864.a.c	ENSGT01030000234964.A.a.a.d.b	ENSGT00940000161248	ENSGT00940000165847	ENSGT01090000261020.B	ENSGT00950000183189.a.b.b ##22	ENSGT00390000007953	ENSGT00950000182974.a.a.a.a	ENSGT00390000012692.j	ENSGT00940000156803	ENSGT00390000012182.j	ENSGT00910000144363.g.b.b.a.a	ENSGT00940000158388	ENSGT00910000144363.g.a.a.b.a.a	ENSGT00910000144363.g.a.a.b.a.b	ENSGT00730000111366	ENSGT00940000157029	ENSGT00940000153669.b	ENSGT00940000154344.a	ENSGT00940000153299.d	ENSGT00940000160515
Hybrid Bos Indicus	MODERN SPECIES	315	SLITRK4 (ENSBIXG00005004638)	ENSBIXG00005027055	ENSBIXG00005005606	ENSBIXG00005027125	ENSBIXG00005027138	ENSBIXG00005027152	ENSBIXG00005027165	ENSBIXG00005027181	ENSBIXG00005027191	ENSBIXG00005004675	ENSBIXG00005004684	ENSBIXG00005027216	ENSBIXG00005027241	ENSBIXG00005027274	ENSBIXG00005027294	FMR1 (ENSBIXG00005027682) ##22	ENSBIXG00005027751	AFF2 (ENSBIXG00005027876)	ENSBIXG00005007783	IDS (ENSBIXG00005006628)	ENSBIXG00005028078	ENSBIXG00005028088	TMEM185A (ENSBIXG00005028166)	ENSBIXG00005028191	ENSBIXG00005028277	ENSBIXG00005028286	ENSBIXG00005028346	ENSBIXG00005028391	MTM1 (ENSBIXG00005028453)	MTMR1 (ENSBIXG00005028830)	CD99L2 (ENSBIXG00005002259)
Cow	MODERN SPECIES	177	MCF2 (ENSBTAG00000004007)	ATP11C (ENSBTAG00000016484)	ENSBTAG00000051471	ENSBTAG00000047089	ENSBTAG00000047819	ENSBTAG00000036144	ENSBTAG00000052701	ENSBTAG00000049311	SLITRK4 (ENSBTAG00000011780)	ENSBTAG00000000997	ENSBTAG00000019009	MGC148328 (ENSBTAG00000045940)	SLITRK2 (ENSBTAG00000039377)	ENSBTAG00000016940	ENSBTAG00000045773	FMR1 (ENSBTAG00000012552) ##22	FMR1NB (ENSBTAG00000034045)	AFF2 (ENSBTAG00000020750)	ENSBTAG00000018311	IDS (ENSBTAG00000011056)	ENSBTAG00000049027	ENSBTAG00000050778	TMEM185A (ENSBTAG00000006818)	ENSBTAG00000046565	ENSBTAG00000050724	ENSBTAG00000048623	ENSBTAG00000055194	ENSBTAG00000048505	ENSBTAG00000055100	MAMLD1 (ENSBTAG00000021713)	MTM1 (ENSBTAG00000014138)
Bos_a	ANCESTRAL SPECIES	104										ENSGT00390000004226.b.a	ENSGT01030000234964.A.a.a.c	ENSGT01030000234964.A.a.b	ENSGT00940000161248	ENSGT00940000165847	ENSGT00910000146020	ENSGT00950000183189.a.b.b ##22	ENSGT00390000007953	ENSGT00950000182974.a.a.a.a	ENSGT00390000012692.j	ENSGT00940000156803	ENSGT00390000012182.j	ENSGT00940000161825.u.a	ENSGT00910000144363.g.b.b.a.a	ENSGT00940000158388	ENSGT00910000144363.g.b.b.a.b
Domestic yak	MODERN SPECIES	69	ENSBGRG00000013390	ENSBGRG00000013335	ENSBGRG00000013322	SOX3 (ENSBGRG00000013074)	ENSBGRG00000013037	LDOC1 (ENSBGRG00000012930)	ENSBGRG00000012915	ENSBGRG00000012864	ENSBGRG00000012828	SLITRK4 (ENSBGRG00000012800)	ENSBGRG00000012699	ENSBGRG00000012673	SLITRK2 (ENSBGRG00000012655)	ENSBGRG00000012647	ENSBGRG00000012610	FMR1 (ENSBGRG00000012058) ##22	ENSBGRG00000011977	AFF2 (ENSBGRG00000011607)	ENSBGRG00000011556	IDS (ENSBGRG00000011353)	ENSBGRG00000011279	ENSBGRG00000011241	ENSBGRG00000011182	TMEM185A (ENSBGRG00000010999)	ENSBGRG00000010979	ENSBGRG00000010914	ENSBGRG00000010892	ENSBGRG00000010802	ENSBGRG00000010760	GRIA3 (ENSBGRG00000010476)	ENSBGRG00000010041
Wild yak	MODERN SPECIES	1843															ENSBMUG00000019691	FMR1 (ENSBMUG00000019543) ##22	ENSBMUG00000019396	ENSBMUG00000019382	AFF2 (ENSBMUG00000019315)	ENSBMUG00000019209	IDS (ENSBMUG00000019195)	ENSBMUG00000019109	ENSBMUG00000019085
Eulipotyphla	ANCESTRAL SPECIES																	ENSGT00950000183189.a.b.b ##22
Hedgehog	MODERN SPECIES	603																FMR1 (ENSEEUG00000015366) ##22
Common shrew	MODERN SPECIES	11399																FMR1 (ENSSARG00000003475) ##22
Atlantogenata	ANCESTRAL SPECIES	194															ENSGT00940000165847	ENSGT00950000183189.a.b.b ##22	ENSGT00390000007953	ENSGT00950000182974.a.a.a.a	ENSGT00940000156803
Afrotheria	ANCESTRAL SPECIES	226												ENSGT00940000160971	ENSGT00940000162864.e	ENSGT00940000161248	ENSGT00940000165847	ENSGT00950000183189.a.b.b ##22	ENSGT00390000007953	ENSGT00950000182974.a.a.a.a	ENSGT00940000156803
Tenrec	MODERN SPECIES	549																FMR1 (ENSETEG00000006061) ##22
Afrotheria_a	ANCESTRAL SPECIES	226												ENSGT00940000160971	ENSGT00940000162864.e	ENSGT00940000161248	ENSGT00940000165847	ENSGT00950000183189.a.b.b ##22	ENSGT00390000007953	ENSGT00950000182974.a.a.a.a	ENSGT00940000156803
Elephant	MODERN SPECIES	569								ENSLAFG00000015302	ENSLAFG00000002746	ENSLAFG00000032374	ENSLAFG00000028965	SLITRK4 (ENSLAFG00000031256)	ENSLAFG00000014412	SLITRK2 (ENSLAFG00000028207)	ENSLAFG00000031155	FMR1 (ENSLAFG00000013592) ##22	ENSLAFG00000011672	AFF2 (ENSLAFG00000018691)	IDS (ENSLAFG00000010240)
Hyrax	MODERN SPECIES	400																FMR1 (ENSPCAG00000011936) ##22
Xenarthra	ANCESTRAL SPECIES																	ENSGT00950000183189.a.b.b ##22
Sloth	MODERN SPECIES	443																ENSCHOG00000006340 ##22
Armadillo	MODERN SPECIES	3862																FMR1 (ENSDNOG00000019486) ##22
Platypus	MODERN SPECIES	17	ENSOANG00000029775	NDUFA1 (ENSOANG00000002591)	ENSOANG00000002592	UPF3B (ENSOANG00000002594)	RPL39 (ENSOANG00000046605)	SEPTIN6 (ENSOANG00000002596)	NKRF (ENSOANG00000002598)	ATP11C (ENSOANG00000002599)	SLC25A43 (ENSOANG00000012900)	SLC25A5 (ENSOANG00000012943)	STEEP1 (ENSOANG00000001808)	ENSOANG00000044627	UBE2A (ENSOANG00000039379)	SLITRK4 (ENSOANG00000001080)	SLITRK2 (ENSOANG00000003708)	FMR1 (ENSOANG00000001097) ##22	ENSOANG00000030698	ENSOANG00000001095	IDS (ENSOANG00000001093)	TMEM185A (ENSOANG00000001092)	ENSOANG00000001091	ENSOANG00000001090	ENSOANG00000011632	MTM1 (ENSOANG00000011634)	MTMR1 (ENSOANG00000011635)	CD99L2 (ENSOANG00000011636)	HMGB3 (ENSOANG00000000353)	ENSOANG00000011638	VMA21 (ENSOANG00000043077)	ENSOANG00000011640	RNF128 (ENSOANG00000011641)
Anura	ANCESTRAL SPECIES	19	ENSGT01100000263502.A.a.a.a.a	ENSGT01070000253816.a.b	ENSGT00940000158723	ENSGT00940000153425	ENSGT00940000165126	ENSGT00940000163390	ENSGT00940000162539	ENSGT00940000160788	ENSGT00940000163347	ENSGT00940000159516	ENSGT00940000156974	ENSGT00940000158878	ENSGT00940000162359	ENSGT00940000160971	ENSGT00940000161248	ENSGT00950000183189.a.b.b ##22	ENSGT00950000182974.a.a.a.a	ENSGT00940000156803	ENSGT00940000158388	ENSGT00390000012182	ENSGT00730000111366	ENSGT00940000157029	ENSGT00940000153669.b	ENSGT00940000154344.a	ENSGT00940000153299	ENSGT00940000160515	ENSGT00390000017980	ENSGT00940000164304	ENSGT00940000159451	ENSGT00940000158347	ENSGT00390000005094
Leishan spiny toad	MODERN SPECIES	12	ENSLLEG00000015040	ENSLLEG00000015021	ENSLLEG00000014734	F9 (ENSLLEG00000013091)	MCF2 (ENSLLEG00000012727)	ATP11C (ENSLLEG00000021660)	SOX3 (ENSLLEG00000021575)	ENSLLEG00000021547	ENSLLEG00000021529	SLITRK4 (ENSLLEG00000021481)	ENSLLEG00000021443	SLITRK2 (ENSLLEG00000021429)	ENSLLEG00000021402	ENSLLEG00000021375	ENSLLEG00000021356	FMR1 (ENSLLEG00000020763) ##22	ENSLLEG00000020726	AFF2 (ENSLLEG00000020486)	ENSLLEG00000020458	IDS (ENSLLEG00000020174)	ENSLLEG00000020131	TMEM185A (ENSLLEG00000019944)	ENSLLEG00000019901	ENSLLEG00000019874	MAMLD1 (ENSLLEG00000019775)	MTM1 (ENSLLEG00000019183)	MTMR1 (ENSLLEG00000018118)	CD99L2 (ENSLLEG00000017773)	HMGB3 (ENSLLEG00000017633)	GPR50 (ENSLLEG00000017599)	ENSLLEG00000017575
Frog	MODERN SPECIES	8	ENSXETG00000049167	ENSXETG00000042401	pcdh19 (ENSXETG00000031488)	ENSXETG00000038100	ENSXETG00000043428	diaph2 (ENSXETG00000018132)	ENSXETG00000049227	bcorl1 (ENSXETG00000007610)	thrsp (ENSXETG00000044715)	tspan6 (ENSXETG00000007608)	sox3 (ENSXETG00000046055)	ENSXETG00000048839	slitrk4 (ENSXETG00000012352)	mynn (ENSXETG00000004288)	ENSXETG00000042834	soho1 (ENSXETG00000019647) ##22	aff2 (ENSXETG00000019630)	ids (ENSXETG00000007745)	tmem185a (ENSXETG00000007744)	mamld1 (ENSXETG00000007743)	mtm1 (ENSXETG00000017786)	cd99l2 (ENSXETG00000011390)	mtmr1 (ENSXETG00000007741)	hmgb3 (ENSXETG00000007740)	mtnr1c (ENSXETG00000005878)	vma21 (ENSXETG00000025460)	pasd1 (ENSXETG00000043557)	tbc1d8b (ENSXETG00000002382)	rnf128 (ENSXETG00000037534)	radx (ENSXETG00000002379)	nrk (ENSXETG00000004324)
Coelacanth	MODERN SPECIES	331																FMR1 (ENSLACG00000005358) ##22	ENSLACG00000008183	ENSLACG00000010860	IDS (ENSLACG00000011933)	ANKRD46 (ENSLACG00000012116)	TMEM185A (ENSLACG00000012191)	ENSLACG00000012431	ENSLACG00000012506	ENSLACG00000013569	MTM1 (ENSLACG00000014251)	MTMR1 (ENSLACG00000014535)	CD99L2 (ENSLACG00000014774)	HMGB3 (ENSLACG00000015121)	ENSLACG00000015614	ENSLACG00000016260	TBC1D8B (ENSLACG00000016469)
Actinopterygii	ANCESTRAL SPECIES	5												ENSGT00440000037505.b	ENSGT00940000159942.b	ENSGT00940000160971	ENSGT00940000161248	ENSGT00950000183189.a.b.b ##22	ENSGT00950000182974.a.a.a.a	ENSGT00940000156803	ENSGT00390000017614	ENSGT00940000163031.b.b	ENSGT00440000033329.b.a.b	ENSGT00390000013770	ENSGT00440000033895	ENSGT01090000260076.b.a	ENSGT00950000183196.D.b	ENSGT00390000005094.g	ENSGT00940000158347.y	ENSGT00940000167197	ENSGT00940000159451	ENSGT01050000245018	ENSGT00940000164304
Neopterygii	ANCESTRAL SPECIES	178												ENSGT00440000037505.b	ENSGT00940000159942.b	ENSGT00940000160971	ENSGT00940000161248	ENSGT00950000183189.a.b.b ##22	ENSGT00950000182974.a.a.a.a	ENSGT00940000156803	ENSGT00390000017614	ENSGT00940000163031.b.b	ENSGT00440000033329.b.a.b	ENSGT00390000013770	ENSGT00440000033895	ENSGT01090000260076.b.a	ENSGT00950000183196.D.b	ENSGT00390000005094.g	ENSGT00940000158347.y	ENSGT01050000245018	ENSGT00940000159451	ENSGT00940000164304	ENSGT00390000017980
Osteoglossocephalai	ANCESTRAL SPECIES	133								ENSGT00550000075136	ENSGT00940000155470.a	ENSGT00390000006788.a.a	ENSGT00390000011725.c	ENSGT00940000160863	ENSGT00940000159942.b	ENSGT00940000160971	ENSGT00940000161248	ENSGT00950000183189.a.b.b ##22	ENSGT00950000182974.a.a.a.a	ENSGT00940000156803	ENSGT00390000017614	ENSGT00940000163031.b.b	ENSGT00440000033329.b.a.b	ENSGT00390000013770	ENSGT00440000033895	ENSGT01090000260076.b.a	ENSGT00950000183196.D.b	ENSGT00940000159795	ENSGT00940000165542	ENSGT00940000153441.b	ENSGT00940000160487	ENSGT00940000160541	ENSGT00510000046732.B
Clupeocephala	ANCESTRAL SPECIES	28	ENSGT00940000162861	ENSGT00940000164256	ENSGT00940000153203.B	ENSGT00940000157061.a	ENSGT00940000159900	ENSGT00940000160999	ENSGT00740000115581.f	ENSGT00940000156736.c.a	ENSGT00390000010318	ENSGT00390000011725.c	ENSGT01000000220275	ENSGT00940000160863	ENSGT00940000159942.b	ENSGT00940000160971	ENSGT00940000161248	ENSGT00950000183189.a.b.b ##22	ENSGT00950000182974.a.a.a.a	ENSGT00940000156803	ENSGT00390000017614.f	ENSGT00940000163031.b.b	ENSGT00440000033329.b.a.b	ENSGT00390000013770	ENSGT00440000033895	ENSGT00940000160633.b	ENSGT01090000260076.b.a	ENSGT00950000183196.D.b	ENSGT00940000159795	ENSGT00940000165542	ENSGT00940000160541	ENSGT00510000046732.B	ENSGT00920000149123.d
Otomorpha	ANCESTRAL SPECIES	310	ENSGT00940000164256	ENSGT00940000153203.B	ENSGT00940000157061.a	ENSGT00940000159900	ENSGT00940000160999	ENSGT00740000115581.f	ENSGT00940000156736.c.a	ENSGT00390000010318	ENSGT00390000011725.c	ENSGT01000000220275	ENSGT00940000160863	ENSGT00940000159942.b	ENSGT00940000162571.c.b	ENSGT00940000160971	ENSGT00940000161248	ENSGT00950000183189.a.b.b ##22	ENSGT00950000182974.a.a.a.a	ENSGT00940000156803	ENSGT00390000017614.f	ENSGT00940000163031.b.b
Otophysi	ANCESTRAL SPECIES	10	ENSGT00940000158505.n.a	ENSGT00940000153713.B.c	ENSGT00390000016928.d	ENSGT00940000159900	ENSGT00940000160999	ENSGT00740000115581.f	ENSGT00940000156736.c.a	ENSGT00390000010318	ENSGT00390000011725.c	ENSGT01000000220275	ENSGT00940000160863	ENSGT00940000159942.b	ENSGT00940000162571.c.a	ENSGT00940000160971	ENSGT00940000161248	ENSGT00950000183189.a.b.b ##22	ENSGT00950000182974.a.a.a.a	ENSGT00940000156803	ENSGT00390000017614.f	ENSGT00940000163031.b.b	ENSGT00510000052596.a	ENSGT00390000002866.b	ENSGT00950000182987.c.b	ENSGT00390000001610.c.a	ENSGT00940000153203.B	ENSGT00940000157061.a	ENSGT00950000182864.a.b.b.a.b.a.a.a.b.f	ENSGT00390000015138	ENSGT00390000000436	ENSGT00940000165075.a.b	ENSGT00940000160001
Characiphysae	ANCESTRAL SPECIES	21	ENSGT00940000158505.n.a	ENSGT00940000153713.B.c	ENSGT00390000016928.d	ENSGT00940000159900	ENSGT00940000160999	ENSGT00740000115581.f	ENSGT00940000156736.c.a	ENSGT00390000010318	ENSGT00390000011725.c	ENSGT01000000220275	ENSGT00940000160863	ENSGT00940000159942.b	ENSGT00940000162571.c.a	ENSGT00940000160971	ENSGT00940000161248	ENSGT00950000183189.a.b.b ##22	ENSGT00950000182974.a.a.a.a	ENSGT00940000156803	ENSGT00390000017614.f.d.b.b	ENSGT00390000017614.f.d.a	ENSGT00940000163031.b.b	ENSGT00510000052596.a	ENSGT00390000002866.b	ENSGT00950000182987.c.b	ENSGT00390000001610.c.a	ENSGT00940000153203.B	ENSGT00940000157061.a	ENSGT00950000182864.a.b.b.a.b.a.a.a.b.f	ENSGT00390000015138.g	ENSGT00390000000436	ENSGT00940000165075.a.b
Characiphysae_b	ANCESTRAL SPECIES	16	ENSGT00940000158505.n.a	ENSGT00940000153713.B.c	ENSGT00390000016928.d	ENSGT00940000159900	ENSGT00940000160999	ENSGT00740000115581.f	ENSGT00940000156736.c.a	ENSGT00390000010318	ENSGT00390000011725.c	ENSGT01000000220275	ENSGT00940000160863	ENSGT00940000159942.b	ENSGT00940000162571.c.a	ENSGT00940000160971	ENSGT00940000161248	ENSGT00950000183189.a.b.b ##22	ENSGT00950000182974.a.a.a.a	ENSGT00940000156803	ENSGT00390000017614.f.d.b.b	ENSGT00390000017614.f.d.a	ENSGT00940000163031.b.b	ENSGT00510000052596.a	ENSGT00390000002866.b	ENSGT00950000182987.c.b	ENSGT00390000001610.c.a	ENSGT00940000153203.B	ENSGT00940000157061.a	ENSGT00950000182864.a.b.b.a.b.a.a.a.b.f	ENSGT00390000015138.g	ENSGT00390000000436	ENSGT00940000165075.a.b
Characoidei	ANCESTRAL SPECIES	56														ENSGT00940000160971	ENSGT00940000161248	ENSGT00950000183189.a.b.b ##22	ENSGT00950000182974.a.a.a.a	ENSGT00940000156803	ENSGT00390000017614.f.d.b.a.a	ENSGT00390000017614.f.d.a	ENSGT00940000163031.b.b	ENSGT00510000052596.a	ENSGT00390000002866.b	ENSGT00950000182987.c.b	ENSGT00940000153203.B	ENSGT00940000157061.a	ENSGT00950000182864.a.b.b.a.b.a.a.a.b.f	ENSGT00390000015138.g	ENSGT00390000000436	ENSGT00940000165075.a.b	ENSGT00940000160001
Red-bellied piranha	MODERN SPECIES	21														SLITRK4 (ENSPNAG00000024677)	SLITRK2 (ENSPNAG00000024697)	fmr1 (ENSPNAG00000006251) ##22	AFF2 (ENSPNAG00000005945)	ids (ENSPNAG00000024785)	ENSPNAG00000024800	ENSPNAG00000024851	zgc:66433 (ENSPNAG00000004963)	ENSPNAG00000003855	rnf20 (ENSPNAG00000005856)	aldob (ENSPNAG00000025043)	maea (ENSPNAG00000025102)	zgc:136929 (ENSPNAG00000025125)	ENSPNAG00000025205	si:ch211-175m2.5 (ENSPNAG00000003895)	smim19 (ENSPNAG00000025291)	egr1 (ENSPNAG00000025307)	reep2 (ENSPNAG00000005024)
Mexicana tetra	MODERN SPECIES	16	scocb (ENSAMXG00000002131)	zgc:154054 (ENSAMXG00000002123)	ppid (ENSAMXG00000002090)	etfdh (ENSAMXG00000002059)	rxfp1 (ENSAMXG00000001943)	ENSAMXG00000033016	ENSAMXG00000043703	ENSAMXG00000038223	ENSAMXG00000030043	ENSAMXG00000041111	ENSAMXG00000040720	SLITRK4 (ENSAMXG00000010158)	SLITRK2 (ENSAMXG00000025539)	ENSAMXG00000030103	ENSAMXG00000039118	fmr1 (ENSAMXG00000000371) ##22	ENSAMXG00000041191	AFF2 (ENSAMXG00000000387)	ENSAMXG00000032940	ids (ENSAMXG00000029490)	ENSAMXG00000000399	ENSAMXG00000036126	ENSAMXG00000037167	zgc:66433 (ENSAMXG00000000404)	ENSAMXG00000035512	ENSAMXG00000036163	rnf20 (ENSAMXG00000000408)	aldob (ENSAMXG00000000416)	maea (ENSAMXG00000000411)	zgc:136929 (ENSAMXG00000042011)	ENSAMXG00000043519
Channel catfish	MODERN SPECIES	27	ENSIPUG00000014107	ENSIPUG00000014121	uba2 (ENSIPUG00000014137)	Ca5b (ENSIPUG00000014223)	ENSIPUG00000014249	slc7a5 (ENSIPUG00000014258)	rab33a (ENSIPUG00000014269)	ENSIPUG00000014278	ENSIPUG00000014301	ENSIPUG00000014324	slitrk4 (ENSIPUG00000014335)	ENSIPUG00000014356	ENSIPUG00000014360	SLITRK2 (ENSIPUG00000014371)	ENSIPUG00000014381	fmr1 (ENSIPUG00000014418) ##22	aff2 (ENSIPUG00000014592)	ids (ENSIPUG00000014634)	zgc:162941 (ENSIPUG00000014678)	ENSIPUG00000014688	lyg (ENSIPUG00000014738)	ENSIPUG00000014786	zgc:66433 (ENSIPUG00000014794)	tmem109 (ENSIPUG00000014844)	rnf20 (ENSIPUG00000014855)	aldob (ENSIPUG00000014950)	maea (ENSIPUG00000014995)	zgc:136929 (ENSIPUG00000015060)	ENSIPUG00000015109	si:ch211-175m2.5 (ENSIPUG00000015136)	smim19 (ENSIPUG00000015149)
Cyprinoidei	ANCESTRAL SPECIES	9	ENSGT00940000154495.b.a.a.b	ENSGT00940000157622.b	ENSGT00940000158505.n.a	ENSGT00940000153713.B.c	ENSGT00390000016928.d	ENSGT00940000159900	ENSGT00940000160999.c	ENSGT00740000115581.f	ENSGT00940000156736.c.a	ENSGT00390000010318	ENSGT00390000011725.c	ENSGT00940000160863	ENSGT00940000159942.b	ENSGT00940000160971	ENSGT00940000161248	ENSGT00950000183189.a.b.b ##22	ENSGT00950000182974.a.a.a.a	ENSGT00940000156803	ENSGT00390000017614.f.b	ENSGT00390000017614.f.a.a	ENSGT00390000017614.f.a.b	ENSGT00940000163031.b.b	ENSGT00510000052596.a	ENSGT00390000002866.b.m	ENSGT00950000182987.c.b	ENSGT00390000001610.c.a	ENSGT00940000153203.B	ENSGT00940000157061.a	ENSGT00950000182864.a.b.b.a.b.a.a.a.b.f	ENSGT00390000015138	ENSGT00390000000436
Cyprininae	DUPLICATION
Cyprininae	ANCESTRAL SPECIES	558								ENSGT00940000157622.b	ENSGT00940000158505.n.a.e	ENSGT00940000153713.B.c.v	ENSGT00390000016928.d.e	ENSGT00940000159900.a	ENSGT00940000160971.d	ENSGT00940000161248.m	ENSGT00940000161248.n	ENSGT00950000183189.a.b.b.c ##22	ENSGT00950000182974.a.a.a.a.r	ENSGT00940000156803.l	ENSGT00390000017614.f.b	ENSGT00390000017614.f.a.a.b.a	ENSGT00390000017614.f.a.b	ENSGT00390000017614.f.a.a.a.b	ENSGT00940000163031.b.b.b	ENSGT00940000158095.i	ENSGT00940000160001.c.b	ENSGT00940000165075.a.b.e
Cyprininae_a	ANCESTRAL SPECIES	536													ENSGT00940000160971.d	ENSGT00940000161248.m	ENSGT00940000161248.n	ENSGT00950000183189.a.b.b.c ##22	ENSGT00950000182974.a.a.a.a.r	ENSGT00940000156803.l	ENSGT00390000017614.f.b	ENSGT00390000017614.f.a.a.b.a	ENSGT00390000017614.f.a.b	ENSGT00940000163031.b.b.b	ENSGT00940000158095.i	ENSGT00940000160001.c.b	ENSGT00940000165075.a.b.e
Golden-line barbel	MODERN SPECIES	101															SLITRK2 (ENSSGRG00000007432)	fmr1 (ENSSGRG00000004797) ##22	ENSSGRG00000004687	ids (ENSSGRG00000004656)	zgc:162941 (ENSSGRG00000004654)	lygl1 (ENSSGRG00000004651)	zgc:162941 (ENSSGRG00000004648)	zgc:66433 (ENSSGRG00000004643)	ENSSGRG00000002515	reep2 (ENSSGRG00000002442)	egr1 (ENSSGRG00000002441)	smim19 (ENSSGRG00000002439)	si:ch211-175m2.5 (ENSSGRG00000002432)	ENSSGRG00000001008	maea (ENSSGRG00000000963)	ENSSGRG00000000953	aldob (ENSSGRG00000000952)
Common carp reference	MODERN SPECIES	35	rtn4rl2b (ENSCCRG00000020977)	ENSCCRG00000081190	ENSCCRG00000008359	spon2b (ENSCCRG00000020179)	ENSCCRG00000020172	fgfrl1a (ENSCCRG00000077649)	rnf4 (ENSCCRG00000076111)	rab33a (ENSCCRG00000072645)	ENSCCRG00000079806	ENSCCRG00000062378	SLITRK4 (ENSCCRG00000022737)	ENSCCRG00000058986	SLITRK2 (ENSCCRG00000051881)	ENSCCRG00000079067	ENSCCRG00000076548	fmr1 (ENSCCRG00000023048) ##22	ENSCCRG00000057327	AFF2 (ENSCCRG00000079468)	ENSCCRG00000038125	ids (ENSCCRG00000062369)	lygl2 (ENSCCRG00000034559)	lygl2 (ENSCCRG00000034470)	ENSCCRG00000004168	zgc:162941 (ENSCCRG00000082912)	lygl2 (ENSCCRG00000022590)	zgc:66433 (ENSCCRG00000072558)	ENSCCRG00000058407	ENSCCRG00000016619	reep2 (ENSCCRG00000016567)	egr1 (ENSCCRG00000040299)	si:ch211-175m2.5 (ENSCCRG00000082692)
Goldfish	MODERN SPECIES	5	ENSCARG00000022178	fgfrl1a (ENSCARG00000022187)	rnf4 (ENSCARG00000022205)	selenot2 (ENSCARG00000022212)	rab33a (ENSCARG00000022217)	ENSCARG00000022223	ENSCARG00000022230	ENSCARG00000022262	ENSCARG00000022273	ENSCARG00000022279	ENSCARG00000022284	SLITRK4 (ENSCARG00000022287)	ENSCARG00000022293	SLITRK2 (ENSCARG00000022296)	ENSCARG00000022298	fmr1 (ENSCARG00000022335) ##22	AFF2 (ENSCARG00000023943)	fndc5b (ENSCARG00000023975)	ldlrap1a (ENSCARG00000024042)	maco1a (ENSCARG00000024071)	srfbp1 (ENSCARG00000024117)	e2f3 (ENSCARG00000024121)	ENSCARG00000024139	SOX4 (ENSCARG00000024144)	ENSCARG00000001947	ENSCARG00000002010	sqstm1 (ENSCARG00000002079)	mgat4b (ENSCARG00000002195)	ENSCARG00000002322	canx (ENSCARG00000002333)	MAML1 (ENSCARG00000002416)
Cyprininae	ANCESTRAL SPECIES	385	ENSGT00940000159958.d.b	ENSGT00940000158505.n.a.f	ENSGT00940000153713.B.c.u	ENSGT00390000016928.d.f	ENSGT00940000159900.b	ENSGT00940000160999.c.b	ENSGT00940000160999.c.a.a.a	ENSGT00740000115581.f	ENSGT00940000156736.c.a.g.b	ENSGT00390000010318	ENSGT00390000011725.c.a	ENSGT00940000160863.b	ENSGT00940000159942.b.c	ENSGT00940000162571.c.a	ENSGT00940000160971.c	ENSGT00950000183189.a.b.b.d ##22	ENSGT00950000182974.a.a.a.a.q.a	ENSGT00940000156803.k	ENSGT00390000017614.f.a.a.a.a	ENSGT00940000163031.b.b.a	ENSGT00510000052596.a.f	ENSGT00390000002866.b.m.a	ENSGT00950000182987.c.b.b	ENSGT00940000153203.B.g	ENSGT00940000157061.a.a.a	ENSGT00950000182864.a.b.b.a.b.a.a.a.b.f.a	ENSGT00390000015138.f
Cyprininae_a	ANCESTRAL SPECIES	570																ENSGT00950000183189.a.b.b.d ##22	ENSGT00950000182974.a.a.a.a.q.a	ENSGT00940000156803.k	ENSGT00390000017614.f.a.a.a.a	ENSGT00940000163031.b.b.a	ENSGT00510000052596.a.f	ENSGT00390000002866.b.m.a	ENSGT00950000182987.c.b.b	ENSGT00940000153203.B.g	ENSGT00940000157061.a.a.a	ENSGT00950000182864.a.b.b.a.b.a.a.a.b.f.a
Golden-line barbel	MODERN SPECIES	613																fmr1 (ENSSGRG00000022156) ##22	ENSSGRG00000022117	ids (ENSSGRG00000022114)	ENSSGRG00000022113	zgc:162941 (ENSSGRG00000022111)	zgc:66433 (ENSSGRG00000022110)	ENSSGRG00000022109	rnf20 (ENSSGRG00000022092)	aldob (ENSSGRG00000021724)	maea (ENSSGRG00000021545)	zgc:136929 (ENSSGRG00000021537)	ENSSGRG00000020237	si:ch211-175m2.5 (ENSSGRG00000020211)	smim19 (ENSSGRG00000020210)	smim19 (ENSSGRG00000020208)	egr1 (ENSSGRG00000020206)
Common carp reference	MODERN SPECIES	20	ENSCCRG00000036277	ENSCCRG00000057291	spon2b (ENSCCRG00000080048)	ENSCCRG00000047182	fgfrl1a (ENSCCRG00000057893)	rnf4 (ENSCCRG00000010189)	selenot2 (ENSCCRG00000007073)	rab33a (ENSCCRG00000049260)	ENSCCRG00000007056	ENSCCRG00000061421	ENSCCRG00000060022	SLITRK4 (ENSCCRG00000065823)	ENSCCRG00000071988	ENSCCRG00000057627	ENSCCRG00000004677	fmr1 (ENSCCRG00000049036) ##22	AFF2 (ENSCCRG00000080866)	ids (ENSCCRG00000005510)	zgc:162941 (ENSCCRG00000005468)	zgc:66433 (ENSCCRG00000012333)	ENSCCRG00000062238	rnf20 (ENSCCRG00000012322)	aldob (ENSCCRG00000075499)	maea (ENSCCRG00000012162)	zgc:136929 (ENSCCRG00000055582)	ENSCCRG00000072538	si:ch211-175m2.5 (ENSCCRG00000054362)	smim19 (ENSCCRG00000060581)	egr1 (ENSCCRG00000075441)	ENSCCRG00000066370	reep2 (ENSCCRG00000077863)
Goldfish	MODERN SPECIES	1183														SLITRK2 (ENSCARG00000044365)	ENSCARG00000044356	fmr1 (ENSCARG00000041739) ##22	AFF2 (ENSCARG00000041653)	ENSCARG00000041633	zgc:162941 (ENSCARG00000041614)	zgc:66433 (ENSCARG00000041551)	ENSCARG00000041532	aldob (ENSCARG00000041435)	maea (ENSCARG00000041299)	zgc:136929 (ENSCARG00000041099)	ENSCARG00000041073	smim19 (ENSCARG00000041055)	egr1 (ENSCARG00000041041)	reep2 (ENSCARG00000041020)	ENSCARG00000040146	spon2a (ENSCARG00000040076)	ctbp1 (ENSCARG00000040032)
Zebrafish	MODERN SPECIES	5	slc43a3b (ENSDARG00000057949)	rtn4rl2b (ENSDARG00000037495)	JAKMIP1 (ENSDARG00000076090)	WFS1 (ENSDARG00000074617)	spon2b (ENSDARG00000002732)	ENSDARG00000077880	ENSDARG00000090319	fgfrl1a (ENSDARG00000032617)	rnf4 (ENSDARG00000090993)	selenot2 (ENSDARG00000023220)	rab33a (ENSDARG00000057394)	ENSDARG00000076332	SLITRK4 (ENSDARG00000079781)	ENSDARG00000101918	SLITRK2 (ENSDARG00000006636)	fmr1 (ENSDARG00000037433) ##22	AFF2 (ENSDARG00000052242)	ids (ENSDARG00000071699)	lygl1 (ENSDARG00000056874)	zgc:162941 (ENSDARG00000071701)	lygl2 (ENSDARG00000099562)	zgc:66433 (ENSDARG00000071697)	ENSDARG00000007864	ENSDARG00000111440	ENSDARG00000071695	ENSDARG00000115056	ENSDARG00000104028	rnf20 (ENSDARG00000016664)	aldob (ENSDARG00000053684)	ENSDARG00000104037	maea (ENSDARG00000053691)
Clupeiformes	ANCESTRAL SPECIES																	ENSGT00950000183189.a.b.b ##22
Denticle herring	MODERN SPECIES	9	klhl4 (ENSDCDG00000028316)	eef1g (ENSDCDG00000028321)	polr2g (ENSDCDG00000028359)	ENSDCDG00000028366	gpr137 (ENSDCDG00000028368)	ENSDCDG00000028372	neurog1 (ENSDCDG00000028374)	ARAP3 (ENSDCDG00000028406)	ENSDCDG00000029718	tgfbi (ENSDCDG00000029723)	smad5 (ENSDCDG00000029750)	syvn1 (ENSDCDG00000029766)	st3gal5 (ENSDCDG00000029772)	ENSDCDG00000029773	eif4ebp3l (ENSDCDG00000029774)	fmr1 (ENSDCDG00000029851) ##22	rell2 (ENSDCDG00000032282)	hdac3 (ENSDCDG00000032286)	ENSDCDG00000032457	ENSDCDG00000032488	il1rapl2 (ENSDCDG00000032783)	fam199x (ENSDCDG00000032794)	asah1a (ENSDCDG00000032809)	med29 (ENSDCDG00000032822)	ENSDCDG00000032824	ENSDCDG00000032826	nkrf (ENSDCDG00000032829)	ENSDCDG00000032830	ube2a (ENSDCDG00000032831)	SLC25A5 (ENSDCDG00000032834)	slc25a43 (ENSDCDG00000032836)
Euteleosteomorpha	ANCESTRAL SPECIES	9	ENSGT00940000162861	ENSGT00940000164256	ENSGT00940000153203.B	ENSGT00940000157061.a	ENSGT00940000159900	ENSGT00940000160999	ENSGT00740000115581.f	ENSGT00940000156736.c.a	ENSGT00390000010318	ENSGT00390000011725.c	ENSGT01000000220275	ENSGT00940000160863	ENSGT00940000159942.b	ENSGT00940000160971	ENSGT00940000161248	ENSGT00950000183189.a.b.b ##22	ENSGT00950000182974.a.a.a.a	ENSGT00940000156803	ENSGT00390000017614.f	ENSGT00940000163031.b.b	ENSGT00440000033329.b.a.b	ENSGT00390000013770	ENSGT00440000033895	ENSGT00940000160633.b	ENSGT01090000260076.b.a	ENSGT00950000183196.D.b	ENSGT00940000159795	ENSGT00940000165542	ENSGT00940000160541	ENSGT00510000046732.B	ENSGT00920000149123.d
Protacanthopterygii	ANCESTRAL SPECIES	19	ENSGT00940000164256	ENSGT00940000153203.B	ENSGT00940000157061.a	ENSGT00940000159900	ENSGT00940000160999	ENSGT00740000115581.f	ENSGT00390000011725.c	ENSGT01000000220275	ENSGT00970000197568	ENSGT00940000156736.c.a	ENSGT00390000010318.hc	ENSGT00940000160863	ENSGT00940000159942.b	ENSGT00940000160971	ENSGT00940000161248	ENSGT00950000183189.a.b.b ##22	ENSGT00950000182974.a.a.a.a	ENSGT00940000156803.m	ENSGT00390000017614.f	ENSGT00940000163031.b.b	ENSGT00440000033329.b.a.b	ENSGT00390000013770	ENSGT00440000033895	ENSGT00940000160633.b	ENSGT01090000260076.b.a	ENSGT00950000183196.D.b	ENSGT00940000159795	ENSGT00940000165542	ENSGT00940000160541	ENSGT00510000046732.B	ENSGT00920000149123.d
Salmoninae	DUPLICATION
Salmoninae	ANCESTRAL SPECIES	51	ENSGT00940000164256	ENSGT00940000153203.B.j	ENSGT00940000157061.a.d	ENSGT00940000159900.c	ENSGT00740000115581.f	ENSGT00940000156736.c.a.a.b	ENSGT00390000010318.hc.b	ENSGT00940000157217.f	ENSGT00390000011725.c	ENSGT00940000160863.c.b	ENSGT01000000220275	ENSGT00940000160863.d	ENSGT00940000159942.b	ENSGT00940000160971.f	ENSGT00940000161248.i	ENSGT00950000183189.a.b.b.e ##22	ENSGT00950000182974.a.a.a.a.y.b	ENSGT00940000156803.n	ENSGT00940000163031.b.b.d	ENSGT00440000033329.b.a.b.f	ENSGT00390000013770	ENSGT00440000033895.a	ENSGT00940000160633.b	ENSGT01090000260076.b.a.j	ENSGT00950000183196.D.b.i	ENSGT00940000159795.f	ENSGT00940000165542.b	ENSGT00940000160487	ENSGT00940000160541.f	ENSGT00510000046732.B	ENSGT00920000149123.d.h.a
Salmoninae_a	ANCESTRAL SPECIES	41	ENSGT00940000164256	ENSGT00940000153203.B.j	ENSGT00940000157061.a.d	ENSGT00940000159900.c	ENSGT00740000115581.f	ENSGT00940000156736.c.a.a.b	ENSGT00390000010318.hc.b	ENSGT00940000157217.f	ENSGT00390000011725.c	ENSGT00940000160863.c.b	ENSGT01000000220275	ENSGT00940000160863.d	ENSGT00940000159942.b	ENSGT00940000160971.f	ENSGT00940000161248.i	ENSGT00950000183189.a.b.b.e ##22	ENSGT00950000182974.a.a.a.a.y.b	ENSGT00940000156803.n	ENSGT00940000163031.b.b.d	ENSGT00440000033329.b.a.b.f	ENSGT00390000013770	ENSGT00440000033895.a	ENSGT00940000160633.b.b	ENSGT01090000260076.b.a.j	ENSGT00950000183196.D.b.i	ENSGT00940000159795.f	ENSGT00940000165542.b	ENSGT00940000160487	ENSGT00940000160541.f	ENSGT00510000046732.B	ENSGT00920000149123.d.h.a
Salmo	ANCESTRAL SPECIES	47	ENSGT00940000162861.q	ENSGT00940000164256	ENSGT00940000153203.B.j	ENSGT00940000157061.a.d	ENSGT00940000159900.c	ENSGT00990000211754	ENSGT00740000115581.f	ENSGT00940000156736.c.a.a.b	ENSGT00390000010318.hc.b	ENSGT00940000157217.f	ENSGT00390000011725.c	ENSGT00940000160863.c.b	ENSGT00940000159942.b.g	ENSGT00940000160971.f	ENSGT00940000161248.i	ENSGT00950000183189.a.b.b.e ##22	ENSGT00950000182974.a.a.a.a.y.b	ENSGT00940000156803.n	ENSGT00940000163031.b.b.d	ENSGT00440000033329.b.a.b.f	ENSGT00390000013770	ENSGT00440000033895.a	ENSGT00940000160633.b.b	ENSGT01090000260076.b.a.j	ENSGT00950000183196.D.b.i	ENSGT00940000159795.f	ENSGT00940000160487	ENSGT00940000160541.f	ENSGT00510000046732.B	ENSGT00920000149123.d.h.a	ENSGT00940000156736.d.b.b
River trout	MODERN SPECIES	4	uvssa (ENSSTUG00000029556)	maea (ENSSTUG00000029530)	zgc:136929 (ENSSTUG00000029192)	spon2b (ENSSTUG00000029157)	ENSSTUG00000029145	ENSSTUG00000029131	fgfrl1a (ENSSTUG00000029119)	rnf4 (ENSSTUG00000029067)	ENSSTUG00000029038	selenot2 (ENSSTUG00000029025)	rab33a (ENSSTUG00000029017)	ENSSTUG00000028948	ENSSTUG00000028930	SLITRK4 (ENSSTUG00000028927)	SLITRK2 (ENSSTUG00000028921)	fmr1 (ENSSTUG00000027252) ##22	AFF2 (ENSSTUG00000027163)	ids (ENSSTUG00000027144)	zgc:66433 (ENSSTUG00000027094)	ENSSTUG00000027086	commd5 (ENSSTUG00000027075)	fam199x (ENSSTUG00000027052)	ENSSTUG00000027042	il1rapl2 (ENSSTUG00000027039)	ENSSTUG00000026940	ENSSTUG00000026926	hdac3 (ENSSTUG00000026895)	ENSSTUG00000026890	ENSSTUG00000026880	hspa9 (ENSSTUG00000026641)	fgfrl1b (ENSSTUG00000026623)
Atlantic salmon	MODERN SPECIES	28	MAEA (ENSSSAG00000063575)	ctbp1 (ENSSSAG00000061710)	spon2b (ENSSSAG00000061591)	ENSSSAG00000061545	rnf212 (ENSSSAG00000061518)	ENSSSAG00000108010	fgfrl1a (ENSSSAG00000107638)	RNF4 (ENSSSAG00000061334)	ENSSSAG00000061218	selenot2 (ENSSSAG00000061169)	rab33a (ENSSSAG00000088432)	ENSSSAG00000060952	SLITRK4 (ENSSSAG00000119723)	ENSSSAG00000085205	SLITRK2 (ENSSSAG00000060866)	fmr1 (ENSSSAG00000057413) ##22	AFF2 (ENSSSAG00000057351)	ids (ENSSSAG00000106445)	ENSSSAG00000084630	zgc:66433 (ENSSSAG00000057295)	ENSSSAG00000057147	commd5 (ENSSSAG00000057116)	ENSSSAG00000057087	fam199x (ENSSSAG00000108796)	ENSSSAG00000104195	ENSSSAG00000057079	ENSSSAG00000053042	ENSSSAG00000054712	hdac3 (ENSSSAG00000054212)	ENSSSAG00000111372	fchsd1 (ENSSSAG00000054146)
Oncorhynchus	ANCESTRAL SPECIES	34	ENSGT00940000164256	ENSGT00940000153203.B.j	ENSGT00940000157061.a.d	ENSGT00940000159900.c	ENSGT00740000115581.f	ENSGT00940000156736.c.a.a.b	ENSGT00390000010318.hc.b	ENSGT00940000157217.f	ENSGT00390000011725.c	ENSGT00940000160863.c.b	ENSGT01000000220275	ENSGT00940000160863.d	ENSGT00940000159942.b	ENSGT00940000160971.f	ENSGT00940000161248.i	ENSGT00950000183189.a.b.b.e ##22	ENSGT00950000182974.a.a.a.a.y.b	ENSGT00940000156803.n	ENSGT00940000163031.b.b.d	ENSGT00440000033329.b.a.b.f	ENSGT00390000013770	ENSGT00440000033895.a	ENSGT00940000160633.b.b	ENSGT01090000260076.b.a.j	ENSGT00950000183196.D.b.i	ENSGT00940000159795.f	ENSGT00940000165542.b	ENSGT00940000160541.f	ENSGT00510000046732.B	ENSGT00920000149123.d.h.a	ENSGT00940000156736.d.b.a.a
Rainbow trout	MODERN SPECIES	23	MAEA (ENSOMYG00000044921)	CTBP1 (ENSOMYG00000044943)	spon2b (ENSOMYG00000051419)	ENSOMYG00000044984	fgfrl1a (ENSOMYG00000044988)	ENSOMYG00000071402	rnf4 (ENSOMYG00000044994)	ENSOMYG00000045001	selenot2 (ENSOMYG00000045016)	ENSOMYG00000045022	rab33a (ENSOMYG00000055543)	ENSOMYG00000045029	ENSOMYG00000065557	SLITRK4 (ENSOMYG00000045044)	SLITRK2 (ENSOMYG00000050372)	fmr1 (ENSOMYG00000045067) ##22	AFF2 (ENSOMYG00000045172)	ENSOMYG00000052798	ENSOMYG00000071018	ENSOMYG00000058370	ENSOMYG00000048295	ENSOMYG00000065002	ids (ENSOMYG00000045196)	ENSOMYG00000048639	zgc:66433 (ENSOMYG00000045208)	ENSOMYG00000045218	commd5 (ENSOMYG00000045219)	fam199x (ENSOMYG00000045224)	ENSOMYG00000076308	ENSOMYG00000052516	ENSOMYG00000045234
Oncorhynchus_a	ANCESTRAL SPECIES	34	ENSGT00940000157944.f	ENSGT00940000162861.q	ENSGT00940000164256	ENSGT00940000153203.B.j	ENSGT00940000157061.a.d	ENSGT00940000159900.c	ENSGT00740000115581.f	ENSGT00940000156736.c.a.a.b	ENSGT00390000010318.hc.b	ENSGT00940000157217.f	ENSGT00390000011725.c	ENSGT00940000160863.c.b	ENSGT00940000159942.b	ENSGT00940000160971.f	ENSGT00940000161248.i	ENSGT00950000183189.a.b.b.e ##22	ENSGT00950000182974.a.a.a.a.y.b	ENSGT00940000156803.n	ENSGT00940000163031.b.b.d	ENSGT00440000033329.b.a.b.f	ENSGT00390000013770	ENSGT00440000033895.a	ENSGT00940000160633.b.b	ENSGT01090000260076.b.a.j	ENSGT00950000183196.D.b.i	ENSGT00940000159795.f	ENSGT00940000165542.b	ENSGT00940000160541.f	ENSGT00510000046732.B	ENSGT00920000149123.d.h.a	ENSGT00940000156736.d.b.a.a
Chinook salmon	MODERN SPECIES	32	ALDH3A2 (ENSOTSG00005046535)	nkx1.2lb (ENSOTSG00005046538)	uvssa (ENSOTSG00005046539)	maea (ENSOTSG00005046540)	zgc:136929 (ENSOTSG00005046542)	spon2b (ENSOTSG00005046550)	ENSOTSG00005046552	fgfrl1a (ENSOTSG00005046554)	rnf4 (ENSOTSG00005046557)	ENSOTSG00005046558	selenot2 (ENSOTSG00005046561)	rab33a (ENSOTSG00005046562)	ENSOTSG00005046564	SLITRK4 (ENSOTSG00005046571)	SLITRK2 (ENSOTSG00005046572)	fmr1 (ENSOTSG00005008784) ##22	ENSOTSG00005008931	AFF2 (ENSOTSG00005008933)	ids (ENSOTSG00005008935)	zgc:66433 (ENSOTSG00005008939)	ENSOTSG00005008942	commd5 (ENSOTSG00005008944)	fam199x (ENSOTSG00005008951)	ENSOTSG00005008954	il1rapl2 (ENSOTSG00005008955)	ENSOTSG00005008960	ENSOTSG00005008962	hdac3 (ENSOTSG00005008964)	rell2 (ENSOTSG00005008980)	ENSOTSG00005008982	hspa9 (ENSOTSG00005008985)
Coho salmon	MODERN SPECIES	6	nkx1.2lb (ENSOKIG00005019786)	uvssa (ENSOKIG00005019793)	maea (ENSOKIG00005019815)	zgc:136929 (ENSOKIG00005019874)	spon2b (ENSOKIG00005020009)	ENSOKIG00005020022	fgfrl1a (ENSOKIG00005020056)	rnf4 (ENSOKIG00005020091)	ENSOKIG00005020165	selenot2 (ENSOKIG00005020218)	rab33a (ENSOKIG00005020233)	ENSOKIG00005020256	SLITRK4 (ENSOKIG00005020401)	ENSOKIG00005020410	SLITRK2 (ENSOKIG00005020417)	fmr1 (ENSOKIG00005020470) ##22	AFF2 (ENSOKIG00005020969)	ids (ENSOKIG00005021043)	zgc:66433 (ENSOKIG00005021098)	LONRF3 (ENSOKIG00005021136)	commd5 (ENSOKIG00005021144)	fam199x (ENSOKIG00005021158)	ENSOKIG00005021187	IL1RAPL2 (ENSOKIG00005021197)	ENSOKIG00005021208	ENSOKIG00005021235	ENSOKIG00005021378	hdac3 (ENSOKIG00005021415)	ENSOKIG00005021609	ENSOKIG00005021639	hspa9 (ENSOKIG00005021687)
Huchen	MODERN SPECIES	760																fmr1 (ENSHHUG00000014903) ##22	ENSHHUG00000015971	ENSHHUG00000015976	ENSHHUG00000015980	ids (ENSHHUG00000015984)	zgc:66433 (ENSHHUG00000015998)	ENSHHUG00000016023	ENSHHUG00000016029	commd5 (ENSHHUG00000016035)	fam199x (ENSHHUG00000016044)
Salmoninae	ANCESTRAL SPECIES	320													ENSGT00940000160863.c.a	ENSGT00940000160971.e	ENSGT00940000161248.j	ENSGT00950000183189.a.b.b.f ##22	ENSGT00950000182974.a.a.a.a.y.a	ENSGT00940000156803.m	ENSGT00390000017614.f	ENSGT00940000163031.b.b.c	ENSGT00440000033329.b.a.b.e	ENSGT00440000033895.b	ENSGT01090000260076.b.a.i	ENSGT00950000183196.D.b.j	ENSGT00940000159795.e	ENSGT00940000165542.a	ENSGT00940000160541.e	ENSGT00920000149123.d.h.b	ENSGT00940000156736.d.a	ENSGT00390000013163.g	ENSGT00940000153700.e
Salmoninae_a	ANCESTRAL SPECIES	12	ENSGT00520000055589.d.a.a.d	ENSGT00940000163251.b	ENSGT00990000210158	ENSGT00940000161151.c	ENSGT00390000008738.b	ENSGT00940000162861.r	ENSGT00940000153203.B.i	ENSGT00940000157061.a.c	ENSGT00940000159900.d	ENSGT00940000160999	ENSGT00940000156736.c.a.a.a	ENSGT00390000010318.hc.a	ENSGT00940000160863.c.a	ENSGT00940000160971.e	ENSGT00940000161248.j	ENSGT00950000183189.a.b.b.f ##22	ENSGT00950000182974.a.a.a.a.y.a	ENSGT00940000156803.m	ENSGT00390000017614.f	ENSGT00940000163031.b.b.c	ENSGT00440000033329.b.a.b.e	ENSGT00440000033895.b	ENSGT00940000160633.b.a	ENSGT01090000260076.b.a.i	ENSGT00950000183196.D.b.j	ENSGT00940000159795.e	ENSGT00940000165542.a	ENSGT00940000160541.e	ENSGT00920000149123.d.h.b	ENSGT00940000156736.d.a	ENSGT00390000013163.g
Salmo	ANCESTRAL SPECIES	1	ENSGT00940000157999.h	ENSGT00940000157999.g.b	ENSGT00520000055589.d.a.a.d	ENSGT00940000163251.b	ENSGT00990000210158	ENSGT00940000162861.r	ENSGT00940000153203.B.i	ENSGT00940000157061.a.c	ENSGT00940000159900.d	ENSGT00940000160999	ENSGT00940000156736.c.a.a.a	ENSGT00390000010318.hc.a	ENSGT00940000160863.c.a	ENSGT00940000160971.e	ENSGT00940000161248.j	ENSGT00950000183189.a.b.b.f ##22	ENSGT00950000182974.a.a.a.a.y.a	ENSGT00940000156803.m	ENSGT00390000017614.f	ENSGT00940000163031.b.b.c	ENSGT00440000033329.b.a.b.e	ENSGT00440000033895.b	ENSGT01090000260076.b.a.i	ENSGT00950000183196.D.b.j	ENSGT00940000159795.e	ENSGT00940000165542.a	ENSGT00940000160541.e	ENSGT00920000149123.d.h.b	ENSGT00940000156736.d.a	ENSGT00390000013163.g	ENSGT00940000153700.e
Atlantic salmon	MODERN SPECIES	24	ENSSSAG00000060466	NKX1-1 (ENSSSAG00000107264)	ENSSSAG00000121521	MAEA (ENSSSAG00000060987)	CTBP1 (ENSSSAG00000104678)	spon2b (ENSSSAG00000060717)	ENSSSAG00000112004	ENSSSAG00000117344	fgfrl1a (ENSSSAG00000061433)	rnf4 (ENSSSAG00000053661)	rab33a (ENSSSAG00000110778)	ENSSSAG00000081652	ENSSSAG00000081901	SLITRK4 (ENSSSAG00000060876)	ENSSSAG00000082993	fmr1 (ENSSSAG00000053722) ##22	AFF2 (ENSSSAG00000053621)	ids (ENSSSAG00000053581)	lygl2 (ENSSSAG00000053544)	zgc:66433 (ENSSSAG00000053506)	lonrf3 (ENSSSAG00000053472)	fam199x (ENSSSAG00000053452)	ENSSSAG00000053419	ENSSSAG00000054771	ENSSSAG00000052986	ENSSSAG00000052932	ENSSSAG00000052912	ENSSSAG00000047960	ENSSSAG00000047900	fbxo38 (ENSSSAG00000047516)	csnk1a1 (ENSSSAG00000047433)
River trout	MODERN SPECIES	22	SCMH1 (ENSSTUG00000045433)	STOX2 (ENSSTUG00000045419)	ENSSTUG00000045391	ENSSTUG00000045382	nkx1.2lb (ENSSTUG00000045379)	maea (ENSSTUG00000045345)	zgc:136929 (ENSSTUG00000045200)	ENSSTUG00000045075	fgfrl1a (ENSSTUG00000045030)	rnf4 (ENSSTUG00000045007)	rab33a (ENSSTUG00000044991)	ENSSTUG00000044981	SLITRK4 (ENSSTUG00000044976)	ENSSTUG00000044970	SLITRK2 (ENSSTUG00000044950)	fmr1 (ENSSTUG00000043467) ##22	AFF2 (ENSSTUG00000043367)	zgc:162941 (ENSSTUG00000043310)	zgc:66433 (ENSSTUG00000043232)	LONRF3 (ENSSTUG00000043209)	ENSSTUG00000043207	fam199x (ENSSTUG00000043150)	il1rapl2 (ENSSTUG00000043062)	ENSSTUG00000043050	ENSSTUG00000042915	ENSSTUG00000042842	hdac3 (ENSSTUG00000042642)	ENSSTUG00000042612	hspa9 (ENSSTUG00000039509)	fgfrl1b (ENSSTUG00000039436)	FBXO38 (ENSSTUG00000039245)
Oncorhynchus	ANCESTRAL SPECIES	18	ENSGT00520000055589.d.a.a.d	ENSGT00940000163251.b	ENSGT00990000210158	ENSGT00940000161151.c	ENSGT00390000008738.b	ENSGT00940000162861.r	ENSGT00940000153203.B.i	ENSGT00940000157061.a.c	ENSGT00940000159900.d	ENSGT00940000160999	ENSGT00940000156736.c.a.a.a	ENSGT00390000010318.hc.a	ENSGT00940000160863.c.a	ENSGT00940000160971.e	ENSGT00940000161248.j	ENSGT00950000183189.a.b.b.f ##22	ENSGT00950000182974.a.a.a.a.y.a	ENSGT00940000156803.m	ENSGT00390000017614.f	ENSGT00940000163031.b.b.c	ENSGT00440000033329.b.a.b.e	ENSGT00440000033895.b	ENSGT00940000160633.b.a	ENSGT01090000260076.b.a.i	ENSGT00950000183196.D.b.j	ENSGT00940000159795.e	ENSGT00940000165542.a	ENSGT00940000160541.e	ENSGT00920000149123.d.h.b	ENSGT00940000156736.d.a	ENSGT00390000013163.g
Oncorhynchus_a	ANCESTRAL SPECIES	20	ENSGT00520000055589.d.a.a.d	ENSGT00940000163251.b	ENSGT00990000210158	ENSGT00940000161151.c	ENSGT00390000008738.b	ENSGT00940000162861.r	ENSGT00940000153203.B.i	ENSGT00940000157061.a.c	ENSGT00940000159900.d	ENSGT00940000160999	ENSGT00940000156736.c.a.a.a	ENSGT00390000010318.hc.a	ENSGT00940000160863.c.a	ENSGT00940000160971.e	ENSGT00940000161248.j	ENSGT00950000183189.a.b.b.f ##22	ENSGT00950000182974.a.a.a.a.y.a	ENSGT00940000156803.m	ENSGT00390000017614.f	ENSGT00940000163031.b.b.c	ENSGT00440000033329.b.a.b.e	ENSGT00440000033895.b	ENSGT00940000160633.b.a	ENSGT01090000260076.b.a.i	ENSGT00950000183196.D.b.j	ENSGT00940000159795.e	ENSGT00940000165542.a	ENSGT00940000160541.e	ENSGT00920000149123.d.h.b	ENSGT00940000156736.d.a	ENSGT00390000013163.g
Coho salmon	MODERN SPECIES	10	STOX2 (ENSOKIG00005007402)	atoh8 (ENSOKIG00005007458)	SLBP (ENSOKIG00005007467)	NKX1-1 (ENSOKIG00005007493)	MAEA (ENSOKIG00005007505)	CTBP1 (ENSOKIG00005007538)	ENSOKIG00005007582	spon2b (ENSOKIG00005007589)	ENSOKIG00005007620	ENSOKIG00005007632	fgfrl1a (ENSOKIG00005007637)	rnf4 (ENSOKIG00005007659)	rab33a (ENSOKIG00005007684)	SLITRK4 (ENSOKIG00005007690)	SLITRK2 (ENSOKIG00005007693)	fmr1 (ENSOKIG00005007772) ##22	AFF2 (ENSOKIG00005009712)	ids (ENSOKIG00005009728)	lygl2 (ENSOKIG00005009799)	zgc:66433 (ENSOKIG00005009858)	LONRF3 (ENSOKIG00005009907)	fam199x (ENSOKIG00005010024)	ENSOKIG00005010044	il1rapl2 (ENSOKIG00005010061)	ENSOKIG00005010121	ENSOKIG00005010232	ENSOKIG00005010259	ENSOKIG00005010307	ENSOKIG00005010313	ENSOKIG00005010369	fgfrl1b (ENSOKIG00005011388)
Chinook salmon	MODERN SPECIES	13	spdl1 (ENSOTSG00005040217)	STOX2 (ENSOTSG00005040216)	ENSOTSG00005040211	ENSOTSG00005040210	SLBP (ENSOTSG00005040205)	nkx1.2lb (ENSOTSG00005040201)	maea (ENSOTSG00005040200)	zgc:136929 (ENSOTSG00005038259)	spon2b (ENSOTSG00005038249)	ENSOTSG00005038247	fgfrl1a (ENSOTSG00005038243)	rnf4 (ENSOTSG00005038241)	rab33a (ENSOTSG00005038238)	SLITRK4 (ENSOTSG00005038237)	SLITRK2 (ENSOTSG00005038236)	fmr1 (ENSOTSG00005035496) ##22	ENSOTSG00005035482	ids (ENSOTSG00005035481)	lygl2 (ENSOTSG00005035480)	zgc:66433 (ENSOTSG00005035479)	LONRF3 (ENSOTSG00005035425)	fam199x (ENSOTSG00005035413)	ENSOTSG00005035405	il1rapl2 (ENSOTSG00005035398)	ENSOTSG00005035395	ENSOTSG00005035393	hdac3 (ENSOTSG00005034802)	rell2 (ENSOTSG00005034799)	hspa9 (ENSOTSG00005029601)	fgfrl1b (ENSOTSG00005029587)	FBXO38 (ENSOTSG00005029578)
Rainbow trout	MODERN SPECIES	5		ENSOMYG00000007736	ENSOMYG00000063557	ENSOMYG00000005054	SLBP (ENSOMYG00000004989)	NKX1-1 (ENSOMYG00000053085)	ENSOMYG00000055328	MAEA (ENSOMYG00000007812)	zgc:136929 (ENSOMYG00000016914)	ENSOMYG00000029569	fgfrl1a (ENSOMYG00000009537)	rnf4 (ENSOMYG00000009581)	rab33a (ENSOMYG00000045025)	SLITRK4 (ENSOMYG00000009631)	SLITRK2 (ENSOMYG00000009670)	fmr1 (ENSOMYG00000010284) ##22	AFF2 (ENSOMYG00000012416)	ids (ENSOMYG00000012432)	ENSOMYG00000006880	lygl2 (ENSOMYG00000012460)	zgc:66433 (ENSOMYG00000012500)	ENSOMYG00000058948	ENSOMYG00000012538	fam199x (ENSOMYG00000012581)	ENSOMYG00000056565	ENSOMYG00000012626	ENSOMYG00000012713	ENSOMYG00000051071	ENSOMYG00000012746	ENSOMYG00000012808	ENSOMYG00000013014
Huchen	MODERN SPECIES	372																fmr1 (ENSHHUG00000030736) ##22	ENSHHUG00000031371	ENSHHUG00000031385	ENSHHUG00000031389	ENSHHUG00000031400	lygl2 (ENSHHUG00000031408)	zgc:66433 (ENSHHUG00000031428)	LONRF3 (ENSHHUG00000031469)	fam199x (ENSHHUG00000031481)	ENSHHUG00000031494
Northern pike	MODERN SPECIES	3	maea (ENSELUG00000012979)	zgc:136929 (ENSELUG00000013004)	spon2b (ENSELUG00000013048)	ENSELUG00000013013	RNF212 (ENSELUG00000013082)	fgfrl1a (ENSELUG00000013111)	rnf4 (ENSELUG00000013137)	ENSELUG00000013200	selenot2 (ENSELUG00000013172)	ENSELUG00000033341	rab33a (ENSELUG00000013219)	ENSELUG00000013269	SLITRK4 (ENSELUG00000000480)	ENSELUG00000029184	SLITRK2 (ENSELUG00000000481)	fmr1 (ENSELUG00000013325) ##22	ENSELUG00000032255	AFF2 (ENSELUG00000013368)	ids (ENSELUG00000013417)	lyg2 (ENSELUG00000030629)	zgc:66433 (ENSELUG00000013531)	LONRF3 (ENSELUG00000013594)	commd5 (ENSELUG00000013602)	fam199x (ENSELUG00000013618)	il1rapl2 (ENSELUG00000013734)	ENSELUG00000013868	ENSELUG00000013931	hdac3 (ENSELUG00000013991)	ENSELUG00000014038	ENSELUG00000014087	hspa9 (ENSELUG00000014148)
Acanthomorphata	ANCESTRAL SPECIES	90	ENSGT00940000153232.a.b.b	ENSGT00940000159063	ENSGT00950000182856.a.a.b	ENSGT00940000177201	ENSGT01090000260076.b.a	ENSGT00940000163421.a.d.b	ENSGT00950000183196.D.b	ENSGT00940000159795	ENSGT00940000165542	ENSGT00940000154436.c	ENSGT00450000040404.b	ENSGT00940000155503.b	ENSGT00940000162571	ENSGT00940000159942.b	ENSGT00940000160863	ENSGT00950000183189.a.b.b ##22	ENSGT00950000182974.a.a.a.a	ENSGT00940000156803	ENSGT00390000003924	ENSGT00940000163031.b.b	ENSGT00440000033329.b.a.b	ENSGT00390000013770	ENSGT00440000033895	ENSGT00390000000436	ENSGT00950000183059.a	ENSGT00940000153986.b.b	ENSGT00940000157743	ENSGT00940000155437	ENSGT00940000167144	ENSGT00940000159024	ENSGT00940000157266.b
Euacanthomorphacea	ANCESTRAL SPECIES	67			ENSGT00950000182856.a.a.b	ENSGT00940000177201	ENSGT01090000260076.b.a	ENSGT00940000163421.a.d.b	ENSGT00950000183196.D.b	ENSGT00940000159795	ENSGT00940000165542	ENSGT00940000154436.c	ENSGT00450000040404.b	ENSGT00940000155503.b	ENSGT00940000162571	ENSGT00940000159942.b	ENSGT00940000160863	ENSGT00950000183189.a.b.b ##22	ENSGT00950000182974.a.a.a.a	ENSGT00940000156803	ENSGT00390000003924	ENSGT00940000163031.b.b	ENSGT00440000033329.b.a.b	ENSGT00390000013770	ENSGT00440000033895	ENSGT00390000000436	ENSGT00950000183059.a	ENSGT00940000153986.b.b	ENSGT00940000157743	ENSGT00940000155437	ENSGT00940000167144	ENSGT00940000159024	ENSGT00940000157266.b
Percomorphaceae	ANCESTRAL SPECIES	11							ENSGT00950000182856.a.a.b	ENSGT00940000177201	ENSGT01090000260076.b.a	ENSGT00940000163421.a.d.b	ENSGT00950000183196.D.b	ENSGT00940000159795	ENSGT00940000165542	ENSGT00940000159942.b	ENSGT00940000160863	ENSGT00950000183189.a.b.b ##22	ENSGT00950000182974.a.a.a.a	ENSGT00940000156803	ENSGT00390000003924	ENSGT00940000163031.b.b	ENSGT00440000033329.b.a.b	ENSGT00390000013770	ENSGT00440000033895	ENSGT00390000000436	ENSGT00950000183059.a	ENSGT00940000153986.b.b	ENSGT00940000157743	ENSGT00940000155437	ENSGT00940000167144	ENSGT00940000167349	ENSGT00940000159024
Tiger tail seahorse	MODERN SPECIES	332	zgc:110843 (ENSHCOG00000004414)	ENSHCOG00000004422	zgc:92242 (ENSHCOG00000004430)	PSD2 (ENSHCOG00000004461)	PURA (ENSHCOG00000004472)	nrg2b (ENSHCOG00000004500)	il1rapl2 (ENSHCOG00000004538)	ENSHCOG00000004555	ENSHCOG00000004573	ENSHCOG00000004585	HDAC3 (ENSHCOG00000004619)	ENSHCOG00000004625	ENSHCOG00000004629	ENSHCOG00000004665	rab33a (ENSHCOG00000004726)	fmr1 (ENSHCOG00000004757) ##22	ENSHCOG00000004775	AFF2 (ENSHCOG00000004812)	dcps (ENSHCOG00000004819)	ids (ENSHCOG00000004861)	ENSHCOG00000004894	apln (ENSHCOG00000004906)	xpnpep2 (ENSHCOG00000004944)	SASH3 (ENSHCOG00000004974)	zdhhc9 (ENSHCOG00000000130)	trmt12 (ENSHCOG00000005050)	sytl4 (ENSHCOG00000005074)	SRPX2 (ENSHCOG00000005080)	tspan7 (ENSHCOG00000005093)	ENSHCOG00000005140	cstf2 (ENSHCOG00000005157)
Percomorphaceae_B	ANCESTRAL SPECIES	14	ENSGT00390000016876	ENSGT00950000183097.a.a.a.f.a.b	ENSGT00940000155374.g.b	ENSGT00940000164070.a	ENSGT00940000163551.i.a	ENSGT00950000182856.a.a.b	ENSGT00940000177201	ENSGT00390000015084.c.b	ENSGT01090000260076.b.a	ENSGT00940000163421.a.d.b	ENSGT00950000183196.D.b	ENSGT00940000159795	ENSGT00940000160487	ENSGT00940000159942.b	ENSGT00940000160863	ENSGT00950000183189.a.b.b ##22	ENSGT00950000182974.a.a.a.a	ENSGT00940000156803	ENSGT00390000003924	ENSGT00940000163031.b.b	ENSGT00440000033329.b.a.b	ENSGT00390000013770	ENSGT00440000033895	ENSGT00390000000436	ENSGT00950000183059.a	ENSGT00940000153986.b.b	ENSGT00940000157743	ENSGT00940000155437	ENSGT00940000167144	ENSGT00940000153110.B.f	ENSGT00940000159024
Ovalentaria	ANCESTRAL SPECIES	15	ENSGT00390000016876	ENSGT00950000183097.a.a.a.f.a.b	ENSGT00940000155374.g.b	ENSGT00940000163551.i.a	ENSGT00950000182856.a.a.b	ENSGT00940000177201	ENSGT00390000015084.c.b	ENSGT01090000260076.b.a	ENSGT00940000163421.a.d.b	ENSGT00950000183196.D.b.s.b	ENSGT00950000183196.D.b.s.a	ENSGT00940000159795	ENSGT00940000160487	ENSGT00940000159942.b	ENSGT00940000160863	ENSGT00950000183189.a.b.b ##22	ENSGT00950000182974.a.a.a.a	ENSGT00940000156803	ENSGT00390000003924	ENSGT00940000163031.b.b	ENSGT00440000033329.b.a.b	ENSGT00390000013770	ENSGT00440000033895	ENSGT00390000000436	ENSGT00950000183059.a	ENSGT00940000153986.b.b	ENSGT00940000157743	ENSGT00940000155437	ENSGT00940000167144	ENSGT00940000153110.B.f	ENSGT00940000159024
Ovalentaria_B	ANCESTRAL SPECIES	13	ENSGT00940000163551.i.a	ENSGT00950000182856.a.a.b	ENSGT00940000177201	ENSGT01090000260076.b.a	ENSGT00940000163421.a.d.b	ENSGT00950000183196.D.b.t	ENSGT00950000183196.D.b.s.b	ENSGT00950000183196.D.b.s.a	ENSGT00940000159795	ENSGT00940000160487	ENSGT00940000155503.b	ENSGT00940000162571	ENSGT00940000165542.d	ENSGT00940000159942.b	ENSGT00940000160863	ENSGT00950000183189.a.b.b ##22	ENSGT00950000182974.a.a.a.a	ENSGT00940000156803	ENSGT00390000003924	ENSGT00940000163031.b.b	ENSGT00440000033329.b.a.b	ENSGT00390000013770	ENSGT00440000033895	ENSGT00390000000436	ENSGT00950000183059.a	ENSGT00940000153986.b.b	ENSGT00940000157743	ENSGT00940000155437	ENSGT00940000167144	ENSGT00940000153110.B.f	ENSGT00940000159024
Pomacentridae	ANCESTRAL SPECIES	4	ENSGT00920000149138	ENSGT00390000016876	ENSGT00950000183097.a.a.a.f.a.b	ENSGT00940000155374.g.b	ENSGT00940000163551.i.a	ENSGT00950000182856.a.a.b	ENSGT00390000015084.c.b	ENSGT01090000260076.b.a	ENSGT00940000163421.a.d.b	ENSGT00950000183196.D.b.s.b	ENSGT00950000183196.D.b.s.a	ENSGT00940000159795	ENSGT00940000160487	ENSGT00940000159942.b	ENSGT00940000160863	ENSGT00950000183189.a.b.b ##22	ENSGT00950000182974.a.a.a.a	ENSGT00940000156803	ENSGT00390000003924	ENSGT00940000163031.b.b	ENSGT00440000033329.b.a.b	ENSGT00390000013770.i	ENSGT00440000033895	ENSGT00390000000436	ENSGT00950000183059.a	ENSGT00940000153986.b.b	ENSGT00940000157743	ENSGT00940000155437	ENSGT00940000167144	ENSGT00940000153110.B.f	ENSGT00940000159024
Pomacentridae_A	ANCESTRAL SPECIES	119	ENSGT00920000149138	ENSGT00390000016876	ENSGT00950000183097.a.a.a.f.a.b	ENSGT00940000155374.g.b	ENSGT00940000163551.i.a	ENSGT00950000182856.a.a.b	ENSGT00390000015084.c.b	ENSGT01090000260076.b.a	ENSGT00940000163421.a.d.b	ENSGT00950000183196.D.b.s.b	ENSGT00950000183196.D.b.s.a	ENSGT00940000159795	ENSGT00940000160487	ENSGT00940000159942.b	ENSGT00940000160863	ENSGT00950000183189.a.b.b ##22	ENSGT00950000182974.a.a.a.a	ENSGT00940000156803	ENSGT00390000003924	ENSGT00940000163031.b.b	ENSGT00440000033329.b.a.b	ENSGT00390000013770.i	ENSGT00440000033895	ENSGT00390000000436	ENSGT00950000183059.a	ENSGT00940000153986.b.b	ENSGT00940000157743	ENSGT00940000167144
Amphiprion	ANCESTRAL SPECIES	143	ENSGT00920000149138	ENSGT00390000016876	ENSGT00950000183097.a.a.a.f.a.b	ENSGT00940000155374.g.b	ENSGT00940000163551.i.a	ENSGT00950000182856.a.a.b	ENSGT00390000015084.c.b	ENSGT01090000260076.b.a	ENSGT00940000163421.a.d.b	ENSGT00950000183196.D.b.s.b	ENSGT00950000183196.D.b.s.a	ENSGT00940000159795	ENSGT00940000160487	ENSGT00940000159942.b	ENSGT00940000160863	ENSGT00950000183189.a.b.b ##22	ENSGT00950000182974.a.a.a.a	ENSGT00940000156803	ENSGT00390000003924	ENSGT00940000163031.b.b	ENSGT00440000033329.b.a.b	ENSGT00390000013770.i	ENSGT00440000033895	ENSGT00390000000436	ENSGT00950000183059.a	ENSGT00940000153986.b.b	ENSGT00940000157743	ENSGT00940000155437	ENSGT00940000167144
Orange clownfish	MODERN SPECIES	4	PLS3 (ENSAPEG00000016033)	CNGA2 (ENSAPEG00000015986)	ENSAPEG00000015969	snx25 (ENSAPEG00000015944)	ENSAPEG00000015913	il1rapl2 (ENSAPEG00000015812)	zgc:194679 (ENSAPEG00000015793)	ENSAPEG00000015758	ENSAPEG00000015667	ENSAPEG00000015628	HDAC3 (ENSAPEG00000015573)	ENSAPEG00000015563	ENSAPEG00000015552	ENSAPEG00000015462	rab33a (ENSAPEG00000015376)	fmr1 (ENSAPEG00000015355) ##22	ENSAPEG00000015300	ids (ENSAPEG00000015244)	dcps (ENSAPEG00000015231)	ENSAPEG00000015206	LONRF3 (ENSAPEG00000015187)	commd5 (ENSAPEG00000015168)	fam199x (ENSAPEG00000015137)	smim19 (ENSAPEG00000015122)	ENSAPEG00000015115	gpr137 (ENSAPEG00000015083)	syvn1 (ENSAPEG00000015066)	smad5 (ENSAPEG00000015002)	ap1ar (ENSAPEG00000014952)	zgc:174917 (ENSAPEG00000014890)	ENSAPEG00000014880
Clown anemonefish	MODERN SPECIES	1442												ENSAOCG00000007359	HDAC3 (ENSAOCG00000007417)	ENSAOCG00000007438	rab33a (ENSAOCG00000007448)	fmr1 (ENSAOCG00000008025) ##22	PRMT8 (ENSAOCG00000008130)	CRACR2A (ENSAOCG00000008147)	TMTC2 (ENSAOCG00000008189)
Spiny chromis	MODERN SPECIES	801													ENSAPOG00000006487	ENSAPOG00000006474	rab33a (ENSAPOG00000000952)	fmr1 (ENSAPOG00000006422) ##22
Bicolor damselfish	MODERN SPECIES	396	spata4 (ENSSPAG00000006193)	gpm6aa (ENSSPAG00000006157)	lrit3a (ENSSPAG00000006147)	egf (ENSSPAG00000006051)	elovl6 (ENSSPAG00000006016)	pitx2 (ENSSPAG00000006003)	zgc:77938 (ENSSPAG00000005986)	gar1 (ENSSPAG00000005974)	ENSSPAG00000005953	eif4ea (ENSSPAG00000005937)	ENSSPAG00000005922	ENSSPAG00000005892	HDAC3 (ENSSPAG00000005839)	ENSSPAG00000005813	rab33a (ENSSPAG00000005785)	fmr1 (ENSSPAG00000005758) ##22
Cichlidae	ANCESTRAL SPECIES	8	ENSGT00940000155374.g.b	ENSGT00940000163551.i.a	ENSGT00950000182856.a.a.b	ENSGT00940000177201	ENSGT01090000260076.b.a	ENSGT00940000163421.a.d.b	ENSGT00950000183196.D.b.s.a	ENSGT00940000159795	ENSGT00940000160487	ENSGT00940000159942.b.j.a	ENSGT00940000155503.b	ENSGT00940000162571	ENSGT00940000165542.d	ENSGT00940000159942.b.j.b	ENSGT00940000160863	ENSGT00950000183189.a.b.b ##22	ENSGT00950000182974.a.a.a.a	ENSGT00940000156803	ENSGT00390000003924	ENSGT00940000163031.b.b	ENSGT00440000033329.b.a.b	ENSGT00390000013770	ENSGT00440000033895	ENSGT00390000000436	ENSGT00950000183059.a	ENSGT00940000153986.b.b	ENSGT00940000157743	ENSGT00940000155437	ENSGT00940000167144	ENSGT00940000153110.B.f	ENSGT00940000159024
Pseudocrenilabrinae	ANCESTRAL SPECIES	17	ENSGT00390000016876	ENSGT00950000183097.a.a.a.f.a.b	ENSGT00940000155374.g.b	ENSGT00940000163551.i.a	ENSGT00950000182856.a.a.b	ENSGT00940000177201	ENSGT01090000260076.b.a	ENSGT00940000163421.a.d.b	ENSGT00950000183196.D.b.s.a	ENSGT00940000159795	ENSGT00940000160487	ENSGT00940000162571	ENSGT00940000165542.d	ENSGT00940000159942.b.j.b	ENSGT00940000160863	ENSGT00950000183189.a.b.b ##22	ENSGT00950000182974.a.a.a.a	ENSGT00940000156803	ENSGT00390000003924	ENSGT00940000163031.b.b	ENSGT00440000033329.b.a.b	ENSGT00390000013770	ENSGT00440000033895	ENSGT00390000000436	ENSGT00950000183059.a	ENSGT00940000153986.b.b	ENSGT00940000157743	ENSGT00940000155437	ENSGT00940000167144	ENSGT00940000153110.B.f	ENSGT00940000159024
Pseudocrenilabrinae_A	ANCESTRAL SPECIES	20	ENSGT00920000149138	ENSGT00390000016876	ENSGT00950000183097.a.a.a.f.a.b	ENSGT00940000155374.g.b	ENSGT00940000163551.i.a	ENSGT00950000182856.a.a.b	ENSGT00940000177201	ENSGT01090000260076.b.a	ENSGT00940000163421.a.d.b	ENSGT00950000183196.D.b.s.a	ENSGT00940000159795	ENSGT00940000160487	ENSGT00940000162571	ENSGT00940000159942.b.j.b	ENSGT00940000160863	ENSGT00950000183189.a.b.b ##22	ENSGT00950000182974.a.a.a.a	ENSGT00940000156803	ENSGT00390000003924	ENSGT00940000163031.b.b	ENSGT00440000033329.b.a.b	ENSGT00390000013770	ENSGT00440000033895	ENSGT00390000000436	ENSGT00950000183059.a	ENSGT00940000153986.b.b	ENSGT00940000157743	ENSGT00940000155437	ENSGT00940000167144	ENSGT00940000153110.B.f	ENSGT00940000159024
Haplochromini	ANCESTRAL SPECIES	14	ENSGT00940000157929	ENSGT00920000149138	ENSGT00390000016876	ENSGT00950000183097.a.a.a.f.a.b	ENSGT00940000155374.g.b	ENSGT00940000163551.i.a	ENSGT00950000182856.a.a.b	ENSGT00940000177201	ENSGT01090000260076.b.a	ENSGT00940000163421.a.d.b	ENSGT00950000183196.D.b.s.a	ENSGT00940000159795	ENSGT00940000160487	ENSGT00940000159942.b.j.b	ENSGT00940000160863	ENSGT00950000183189.a.b.b ##22	ENSGT00950000182974.a.a.a.a	ENSGT00940000156803	ENSGT00390000003924	ENSGT00940000163031.b.b	ENSGT00440000033329.b.a.b	ENSGT00390000013770	ENSGT00440000033895	ENSGT00390000000436	ENSGT00950000183059.a	ENSGT00940000153986.b.b	ENSGT00940000157743	ENSGT00940000155437	ENSGT00940000167144	ENSGT00940000153110.B.f	ENSGT00940000159024
Haplochromini_A	ANCESTRAL SPECIES	13	ENSGT00390000016876	ENSGT00950000183097.a.a.a.f.a.b	ENSGT00940000155374.g.b	ENSGT00940000163551.i.a	ENSGT00950000182856.a.a.b	ENSGT00390000015084.c.b	ENSGT00940000177201	ENSGT01090000260076.b.a	ENSGT00940000163421.a.d.b	ENSGT00950000183196.D.b.s.a	ENSGT00940000159795	ENSGT00940000160487	ENSGT00940000167162	ENSGT00940000159942.b.j.b	ENSGT00940000160863	ENSGT00950000183189.a.b.b ##22	ENSGT00950000182974.a.a.a.a	ENSGT00940000156803	ENSGT00390000003924	ENSGT00940000163031.b.b	ENSGT00440000033329.b.a.b	ENSGT00390000013770	ENSGT00440000033895	ENSGT00390000000436	ENSGT00950000183059.a	ENSGT00940000153986.b.b	ENSGT00940000157743	ENSGT00940000155437	ENSGT00940000167144	ENSGT00940000153110.B.f	ENSGT00940000159024
Haplochromini_B	ANCESTRAL SPECIES	7	ENSGT00920000149138	ENSGT00390000016876	ENSGT00950000183097.a.a.a.f.a.b	ENSGT00940000155374.g.b	ENSGT00940000163551.i.a	ENSGT00950000182856.a.a.b	ENSGT00390000015084.c.b	ENSGT01090000260076.b.a	ENSGT00940000163421.a.d.b	ENSGT00950000183196.D.b.s.a	ENSGT00940000159795	ENSGT00940000160487	ENSGT00940000167162	ENSGT00940000159942.b.j.b	ENSGT00940000160863	ENSGT00950000183189.a.b.b ##22	ENSGT00950000182974.a.a.a.a	ENSGT00940000156803	ENSGT00390000003924	ENSGT00940000163031.b.b	ENSGT00440000033329.b.a.b	ENSGT00390000013770	ENSGT00440000033895	ENSGT00390000000436	ENSGT00950000183059.a	ENSGT00940000153986.b.b	ENSGT00940000157743	ENSGT00940000155437	ENSGT00940000167144	ENSGT00940000153110.B.f	ENSGT00940000159024
Zebra mbuna	MODERN SPECIES	1102	st3gal5 (ENSMZEG00005004905)	POLR1A (ENSMZEG00005004915)	ptcd3 (ENSMZEG00005004980)	PLS3 (ENSMZEG00005005009)	CNGA2 (ENSMZEG00005005046)	ENSMZEG00005005063	snx25 (ENSMZEG00005005079)	ENSMZEG00005005145	il1rapl2 (ENSMZEG00005005183)	zgc:194679 (ENSMZEG00005005233)	ENSMZEG00005005251	ENSMZEG00005005325	HDAC3 (ENSMZEG00005005356)	ENSMZEG00005005409	rab33a (ENSMZEG00005005433)	fmr1 (ENSMZEG00005005455) ##22	ENSMZEG00005005467	ENSMZEG00005005490	ids (ENSMZEG00005005543)	dcps (ENSMZEG00005005552)	zgc:66433 (ENSMZEG00005005559)	LONRF3 (ENSMZEG00005005571)	commd5 (ENSMZEG00005005583)	fam199x (ENSMZEG00005005594)	smim19 (ENSMZEG00005005617)	ENSMZEG00005005611	gpr137 (ENSMZEG00005005624)	syvn1 (ENSMZEG00005005639)	smad5 (ENSMZEG00005005688)	ap1ar (ENSMZEG00005005706)	ENSMZEG00005005725
Eastern happy	MODERN SPECIES	11	ptcd3 (ENSACLG00000020653)	PLS3 (ENSACLG00000020687)	CNGA2 (ENSACLG00000020745)	ENSACLG00000020795	snx25 (ENSACLG00000020812)	ENSACLG00000020979	ENSACLG00000021049	il1rapl2 (ENSACLG00000021101)	zgc:194679 (ENSACLG00000021224)	ENSACLG00000021259	ENSACLG00000021405	HDAC3 (ENSACLG00000021445)	ENSACLG00000021528	ENSACLG00000021535	rab33a (ENSACLG00000021547)	fmr1 (ENSACLG00000021559) ##22	ENSACLG00000021630	ids (ENSACLG00000021652)	dcps (ENSACLG00000021703)	zgc:66433 (ENSACLG00000021734)	LONRF3 (ENSACLG00000021827)	commd5 (ENSACLG00000021853)	fam199x (ENSACLG00000021889)	smim19 (ENSACLG00000021938)	ENSACLG00000021955	gpr137 (ENSACLG00000021974)	syvn1 (ENSACLG00000021994)	smad5 (ENSACLG00000022024)	ap1ar (ENSACLG00000022055)	cfap100 (ENSACLG00000022088)	gabra4 (ENSACLG00000022117)
P. nyererei	MODERN SPECIES	296	CNGA2 (ENSPNYG00000000030)	ENSPNYG00000000031	snx25 (ENSPNYG00000000032)	ENSPNYG00000000033	il1rapl2 (ENSPNYG00000000034)	zgc:194679 (ENSPNYG00000000035)	ENSPNYG00000000036	ENSPNYG00000000037	ENSPNYG00000000038	HDAC3 (ENSPNYG00000000039)	ENSPNYG00000000040	ENSPNYG00000000041	ENSPNYG00000000042	ENSPNYG00000000043	rab33a (ENSPNYG00000000044)	fmr1 (ENSPNYG00000000045) ##22	ENSPNYG00000000046	ids (ENSPNYG00000000047)	dcps (ENSPNYG00000000048)	zgc:66433 (ENSPNYG00000000049)	LONRF3 (ENSPNYG00000000050)	commd5 (ENSPNYG00000000051)	fam199x (ENSPNYG00000000052)	smim19 (ENSPNYG00000000053)	ENSPNYG00000000054	gpr137 (ENSPNYG00000000055)	syvn1 (ENSPNYG00000000056)	smad5 (ENSPNYG00000000057)	ap1ar (ENSPNYG00000000058)	ENSPNYG00000000059	gabra4 (ENSPNYG00000000060)
Burton s mouthbrooder	MODERN SPECIES	423	nol4lb (ENSHBUG00000013109)	srms (ENSHBUG00000012974)	ptk6b (ENSHBUG00000012939)	ppdpfb (ENSHBUG00000012866)	tpd52l2b (ENSHBUG00000012850)	trim101 (ENSHBUG00000012836)	DNAJC5 (ENSHBUG00000012771)	adrm1 (ENSHBUG00000012755)	ENSHBUG00000012731	ENSHBUG00000012687	rps21 (ENSHBUG00000012656)	cry3a (ENSHBUG00000012636)	RAB29 (ENSHBUG00000012594)	ENSHBUG00000012567	rab33a (ENSHBUG00000012548)	fmr1 (ENSHBUG00000012534) ##22	ENSHBUG00000012447	ids (ENSHBUG00000012372)	dcps (ENSHBUG00000012352)	zgc:66433 (ENSHBUG00000012334)	LONRF3 (ENSHBUG00000012308)	commd5 (ENSHBUG00000012299)	fam199x (ENSHBUG00000012276)	smim19 (ENSHBUG00000012227)	ENSHBUG00000012235	gpr137 (ENSHBUG00000012209)	syvn1 (ENSHBUG00000012201)	smad5 (ENSHBUG00000012099)	ap1ar (ENSHBUG00000012072)	cfap100 (ENSHBUG00000012050)	gabra4 (ENSHBUG00000012038)
Lyretail cichlid	MODERN SPECIES	292	ptcd3 (ENSNBRG00000000447)	PLS3 (ENSNBRG00000000385)	CNGA2 (ENSNBRG00000000349)	ENSNBRG00000000312	ENSNBRG00000000303	snx25 (ENSNBRG00000000270)	il1rapl2 (ENSNBRG00000000241)	zgc:194679 (ENSNBRG00000000236)	ENSNBRG00000000226	ENSNBRG00000022407	ENSNBRG00000022387	HDAC3 (ENSNBRG00000022356)	ENSNBRG00000022330	ENSNBRG00000022270	rab33a (ENSNBRG00000022235)	fmr1 (ENSNBRG00000022213) ##22	ENSNBRG00000022193	ids (ENSNBRG00000022099)	dcps (ENSNBRG00000022078)	zgc:66433 (ENSNBRG00000022057)	LONRF3 (ENSNBRG00000022042)	commd5 (ENSNBRG00000022018)	fam199x (ENSNBRG00000021989)	smim19 (ENSNBRG00000021970)	ENSNBRG00000021927	gpr137 (ENSNBRG00000021895)	ap1ar (ENSNBRG00000021873)	ENSNBRG00000021845	gabra4 (ENSNBRG00000021817)	ENSNBRG00000021789	GUF1 (ENSNBRG00000021743)
Nile tilapia	MODERN SPECIES	11	PLS3 (ENSONIG00000015882)	CNGA2 (ENSONIG00000015875)	ENSONIG00000015872	snx25 (ENSONIG00000015865)	ENSONIG00000037161	ENSONIG00000038615	il1rapl2 (ENSONIG00000015862)	zgc:194679 (ENSONIG00000015860)	ENSONIG00000015844	ENSONIG00000041935	ENSONIG00000015842	hdac3 (ENSONIG00000015834)	ENSONIG00000027464	ENSONIG00000039736	rab33a (ENSONIG00000033599)	fmr1 (ENSONIG00000015823) ##22	ENSONIG00000015816	ids (ENSONIG00000015811)	dcps (ENSONIG00000015808)	ENSONIG00000042628	zgc:66433 (ENSONIG00000015804)	LONRF3 (ENSONIG00000015802)	commd5 (ENSONIG00000015801)	fam199x (ENSONIG00000040053)	smim19 (ENSONIG00000041392)	ENSONIG00000015797	gpr137 (ENSONIG00000015794)	syvn1 (ENSONIG00000015793)	smad5 (ENSONIG00000015791)	ap1ar (ENSONIG00000015789)	cfap100 (ENSONIG00000015787)
Midas cichlid	MODERN SPECIES	920	ptcd3 (ENSACIG00000022263)	PLS3 (ENSACIG00000022285)	CNGA2 (ENSACIG00000022304)	ENSACIG00000022319	snx25 (ENSACIG00000022335)	ENSACIG00000022358	il1rapl2 (ENSACIG00000022368)	zgc:194679 (ENSACIG00000022391)	ENSACIG00000022397	ENSACIG00000022410	ENSACIG00000022421	HDAC3 (ENSACIG00000022451)	ENSACIG00000022472	ENSACIG00000022483	rab33a (ENSACIG00000022520)	fmr1 (ENSACIG00000022552) ##22	ENSACIG00000022732	ids (ENSACIG00000022813)	dcps (ENSACIG00000022830)	ENSACIG00000022857
Atherinomorphae	ANCESTRAL SPECIES	9	ENSGT00940000155374.g.b	ENSGT00940000163551.i.a	ENSGT00950000182856.a.a.b	ENSGT00940000177201	ENSGT00390000015084.c.b	ENSGT01090000260076.b.a	ENSGT00940000163421.a.d.b	ENSGT00950000183196.D.b.s.b	ENSGT00950000183196.D.b.s.a	ENSGT00940000159795	ENSGT00940000160487	ENSGT00940000162571	ENSGT00940000165542.d	ENSGT00940000159942.b	ENSGT00940000160863	ENSGT00950000183189.a.b.b ##22	ENSGT00950000182974.a.a.a.a	ENSGT00940000156803	ENSGT00390000003924	ENSGT00940000163031.b.b	ENSGT00440000033329.b.a.b	ENSGT00390000013770	ENSGT00440000033895	ENSGT00390000000436	ENSGT00950000183059.a	ENSGT00940000153986.b.b	ENSGT00940000157743	ENSGT00940000155437	ENSGT00940000167144	ENSGT00940000153110.B.f	ENSGT00940000159024
Oryzias	ANCESTRAL SPECIES	17	ENSGT00940000157929	ENSGT00920000149138	ENSGT00390000016876	ENSGT00950000183097.a.a.a.f.a.b	ENSGT00940000155374.g.b	ENSGT00940000164070.a	ENSGT00950000182856.a.a.b	ENSGT00940000177201	ENSGT00390000015084.c.b	ENSGT01090000260076.b.a	ENSGT00950000183196.D.b.s.a	ENSGT00940000159795	ENSGT00940000160487	ENSGT00940000159942.b	ENSGT00940000160863	ENSGT00950000183189.a.b.b ##22	ENSGT00950000182974.a.a.a.a	ENSGT00940000156803	ENSGT00390000003924	ENSGT00940000163031.b.b	ENSGT00440000033329.b.a.b	ENSGT00390000013770	ENSGT00440000033895	ENSGT00390000000436	ENSGT00950000183059.a	ENSGT00940000153986.b.b	ENSGT00940000157743	ENSGT00940000155437	ENSGT00940000167144	ENSGT00940000153110.B.f	ENSGT00940000159024
Oryzias_b	ANCESTRAL SPECIES	20														ENSGT00940000159942.b	ENSGT00940000160863	ENSGT00950000183189.a.b.b ##22	ENSGT00950000182974.a.a.a.a	ENSGT00940000156803	ENSGT00390000003924	ENSGT00940000163031.b.b	ENSGT00440000033329.b.a.b	ENSGT00390000013770	ENSGT00440000033895	ENSGT00390000000436	ENSGT00950000183059.a	ENSGT00940000153986.b.b	ENSGT00940000157743	ENSGT00940000155437	ENSGT00940000167144	ENSGT00940000153110.B.f	ENSGT00940000159024
Indian medaka	MODERN SPECIES	16	slc37a4a (ENSOMEG00000017902)	cfap45 (ENSOMEG00000000445)	cltcb (ENSOMEG00000017800)	VASP (ENSOMEG00000017543)	ENSOMEG00000000439	hdac3 (ENSOMEG00000017507)	ENSOMEG00000000644	HDAC3 (ENSOMEG00000017479)	ENSOMEG00000017461	hdac3 (ENSOMEG00000017435)	ENSOMEG00000017410	ENSOMEG00000017399	ENSOMEG00000017378	ENSOMEG00000017338	rab33a (ENSOMEG00000017306)	fmr1 (ENSOMEG00000017281) ##22	ENSOMEG00000017218	ids (ENSOMEG00000017167)	dcps (ENSOMEG00000017125)	ENSOMEG00000017101	LONRF3 (ENSOMEG00000017011)	commd5 (ENSOMEG00000016978)	fam199x (ENSOMEG00000016943)	smim19 (ENSOMEG00000016889)	ENSOMEG00000016865	gpr137 (ENSOMEG00000016838)	syvn1 (ENSOMEG00000016804)	smad5 (ENSOMEG00000016733)	ap1ar (ENSOMEG00000016705)	cfap100 (ENSOMEG00000016681)	gabra4 (ENSOMEG00000016611)
Javanese ricefish	MODERN SPECIES	1	st3gal5 (ENSOJAG00000010205)	acsl1b (ENSOJAG00000010550)	ENSOJAG00000014160	CASP3 (ENSOJAG00000014186)	irf2 (ENSOJAG00000014196)	ENSOJAG00000014203	SLITRK4 (ENSOJAG00000014208)	ENSOJAG00000014211	ENSOJAG00000014249	ENSOJAG00000014443	ENSOJAG00000014557	ENSOJAG00000014627	ENSOJAG00000014676	ENSOJAG00000014935	rab33a (ENSOJAG00000015066)	fmr1 (ENSOJAG00000015156) ##22	ENSOJAG00000016360	ids (ENSOJAG00000016385)	dcps (ENSOJAG00000001563)	ENSOJAG00000001595	LONRF3 (ENSOJAG00000001630)	commd5 (ENSOJAG00000001658)	fam199x (ENSOJAG00000001677)	smim19 (ENSOJAG00000001699)	ENSOJAG00000001722	gpr137 (ENSOJAG00000001754)	syvn1 (ENSOJAG00000001772)	smad5 (ENSOJAG00000001800)	ap1ar (ENSOJAG00000001834)	cfap100 (ENSOJAG00000001845)	gabra4 (ENSOJAG00000001933)
Oryzias_a	ANCESTRAL SPECIES	47	ENSGT00940000157929	ENSGT00920000149138	ENSGT00390000016876	ENSGT00950000183097.a.a.a.f.a.b	ENSGT00940000155374.g.b	ENSGT00940000164070.a	ENSGT00950000182856.a.a.b	ENSGT00940000177201	ENSGT00390000015084.c.b	ENSGT01090000260076.b.a	ENSGT00950000183196.D.b.s.a	ENSGT00940000159795	ENSGT00940000160487	ENSGT00940000159942.b	ENSGT00940000160863	ENSGT00950000183189.a.b.b ##22	ENSGT00950000182974.a.a.a.a	ENSGT00940000156803	ENSGT00390000003924	ENSGT00940000163031.b.b	ENSGT00440000033329.b.a.b	ENSGT00390000013770	ENSGT00440000033895	ENSGT00390000000436	ENSGT00950000183059.a	ENSGT00940000153986.b.b	ENSGT00940000157743	ENSGT00940000155437	ENSGT00940000167144	ENSGT00940000153110.B.f	ENSGT00940000159024
Japanese Medaka HdrR	MODERN SPECIES	1	POLR1A (ENSORLG00000008753)	ptcd3 (ENSORLG00000008776)	ENSORLG00000008846	ENSORLG00000008864	ENSORLG00000008878	snx25 (ENSORLG00000008915)	ENSORLG00000027299	ENSORLG00000028262	il1rapl2 (ENSORLG00000030351)	ENSORLG00000008968	ENSORLG00000008975	HDAC3 (ENSORLG00000009006)	ENSORLG00000022646	ENSORLG00000009026	rab33a (ENSORLG00000030566)	fmr1 (ENSORLG00000009094) ##22	ENSORLG00000009121	ids (ENSORLG00000009159)	dcps (ENSORLG00000009177)	ENSORLG00000022533	ENSORLG00000009245	commd5 (ENSORLG00000009265)	fam199x (ENSORLG00000009294)	smim19 (ENSORLG00000009304)	ENSORLG00000009324	gpr137 (ENSORLG00000009353)	syvn1 (ENSORLG00000009383)	smad5 (ENSORLG00000009395)	ap1ar (ENSORLG00000009413)	ENSORLG00000009420	gabra4 (ENSORLG00000009442)
Chinese medaka	MODERN SPECIES	1058	st3gal5 (ENSOSIG00000013695)	POLR1A (ENSOSIG00000013709)	ENSOSIG00000013835	CNGA2 (ENSOSIG00000013839)	ENSOSIG00000013843	snx25 (ENSOSIG00000013855)	ENSOSIG00000014211	il1rapl2 (ENSOSIG00000014216)	ENSOSIG00000014798	ENSOSIG00000014801	ENSOSIG00000014803	ENSOSIG00000014808	HDAC3 (ENSOSIG00000014811)	ENSOSIG00000014820	ENSOSIG00000014821	fmr1 (ENSOSIG00000014824) ##22	ENSOSIG00000014826	ids (ENSOSIG00000014832)	dcps (ENSOSIG00000014871)	ENSOSIG00000014875	LONRF3 (ENSOSIG00000014885)	commd5 (ENSOSIG00000014891)	fam199x (ENSOSIG00000014897)	smim19 (ENSOSIG00000014901)	ENSOSIG00000014904	gpr137 (ENSOSIG00000014907)	syvn1 (ENSOSIG00000014909)	smad5 (ENSOSIG00000014914)	ap1ar (ENSOSIG00000014949)	cfap100 (ENSOSIG00000014955)	gabra4 (ENSOSIG00000014964)
Cyprinodontiformes	ANCESTRAL SPECIES	8	ENSGT00950000183097.a.a.a.f.a.b	ENSGT00940000155374.g.b	ENSGT00940000163551.i.a	ENSGT00950000182856.a.a.b	ENSGT00940000177201	ENSGT01090000260076.b.a	ENSGT00940000163421.a.d.b	ENSGT00950000183196.D.b.s.b	ENSGT00950000183196.D.b.s.a	ENSGT00940000159795	ENSGT00940000160487	ENSGT00940000162571	ENSGT00940000165542.d	ENSGT00940000159942.b	ENSGT00940000160863	ENSGT00950000183189.a.b.b ##22	ENSGT00950000182974.a.a.a.a	ENSGT00940000156803	ENSGT00390000003924	ENSGT00940000163031.b.b	ENSGT00440000033329.b.a.b	ENSGT00390000013770	ENSGT00440000033895	ENSGT00390000000436	ENSGT00950000183059.a	ENSGT00940000153986.b.b	ENSGT00940000157743	ENSGT00940000155437	ENSGT00940000167144	ENSGT00940000153110.B.f	ENSGT00940000159024
Aplocheiloidei	ANCESTRAL SPECIES	69	ENSGT00940000157929	ENSGT00920000149138	ENSGT00390000016876	ENSGT00950000183097.a.a.a.f.a.b	ENSGT00940000155374.g.b	ENSGT00940000163551.i.a	ENSGT00950000182856.a.a.b	ENSGT00940000177201	ENSGT01090000260076.b.a	ENSGT00940000163421.a.d.b	ENSGT00950000183196.D.b.s.a	ENSGT00940000159795	ENSGT00940000160487	ENSGT00940000159942.b	ENSGT00940000160863	ENSGT00950000183189.a.b.b ##22	ENSGT00950000182974.a.a.a.a	ENSGT00940000156803	ENSGT00390000003924	ENSGT00940000163031.b.b	ENSGT00440000033329.b.a.b	ENSGT00390000013770	ENSGT00440000033895
Mangrove rivulus	MODERN SPECIES	69	PLS3 (ENSKMAG00000007299)	CNGA2 (ENSKMAG00000007260)	ENSKMAG00000007240	snx25 (ENSKMAG00000007155)	ENSKMAG00000007085	ENSKMAG00000007029	ENSKMAG00000007005	ENSKMAG00000006993	il1rapl2 (ENSKMAG00000006907)	zgc:194679 (ENSKMAG00000006882)	ENSKMAG00000006808	ENSKMAG00000006772	HDAC3 (ENSKMAG00000006701)	ENSKMAG00000006631	rab33a (ENSKMAG00000006593)	fmr1 (ENSKMAG00000006554) ##22	ENSKMAG00000006510	ids (ENSKMAG00000006454)	dcps (ENSKMAG00000006439)	ENSKMAG00000006338	LONRF3 (ENSKMAG00000006285)	commd5 (ENSKMAG00000006250)
Turquoise killifish	MODERN SPECIES	1610															ENSNFUG00015000041	fmr1 (ENSNFUG00015000047) ##22	ENSNFUG00015000053	AFF2 (ENSNFUG00015000055)	IDS (ENSNFUG00015000126)	dcps (ENSNFUG00015000176)	ENSNFUG00015000209	ENSNFUG00015000251	LONRF3 (ENSNFUG00015000299)	commd5 (ENSNFUG00015000387)	FAM199X (ENSNFUG00015000397)	PIGG (ENSNFUG00015000424)	ctsf (ENSNFUG00015000508)	ENSNFUG00015000551	ENSNFUG00015000556	FNTA (ENSNFUG00015000584)	AUP1 (ENSNFUG00015000612)
Cyprinodontoidei	ANCESTRAL SPECIES	19	ENSGT00950000183097.a.a.a.f.a.b	ENSGT00940000155374.g.b	ENSGT00940000163551.i.a	ENSGT00950000182856.a.a.b	ENSGT00940000177201	ENSGT01090000260076.b.a	ENSGT00940000163421.a.d.b	ENSGT00950000183196.D.b.s.b	ENSGT00950000183196.D.b.s.a	ENSGT00940000159795	ENSGT00940000160487	ENSGT00940000162571	ENSGT00940000165542.d	ENSGT00940000159942.b	ENSGT00940000160863	ENSGT00950000183189.a.b.b ##22	ENSGT00950000182974.a.a.a.a	ENSGT00940000156803	ENSGT00390000003924	ENSGT00940000163031.b.b	ENSGT00440000033329.b.a.b	ENSGT00390000013770	ENSGT00440000033895	ENSGT00390000000436	ENSGT00950000183059.a	ENSGT00940000153986.b.b	ENSGT00940000157743	ENSGT00940000155437	ENSGT00940000167144	ENSGT00940000153110.B.f	ENSGT00940000159024
Poeciliinae	ANCESTRAL SPECIES	11	ENSGT00920000149138	ENSGT00390000016876	ENSGT00950000183097.a.a.a.f.a.b	ENSGT00940000155374.g.b	ENSGT00940000163551.i.a	ENSGT00950000182856.a.a.b	ENSGT00940000177201	ENSGT01090000260076.b.a	ENSGT00940000163421.a.d.b	ENSGT00950000183196.D.b.s.b	ENSGT00950000183196.D.b.s.a	ENSGT00940000159795	ENSGT00940000160487	ENSGT00940000159942.b	ENSGT00940000160863	ENSGT00950000183189.a.b.b ##22	ENSGT00950000182974.a.a.a.a	ENSGT00940000156803	ENSGT00390000003924	ENSGT00940000163031.b.b	ENSGT00440000033329.b.a.b	ENSGT00390000013770	ENSGT00440000033895	ENSGT00390000000436	ENSGT00950000183059.a	ENSGT00940000153986.b.b	ENSGT00940000157743	ENSGT00940000155437	ENSGT00940000167144	ENSGT00940000153110.B.f	ENSGT00940000159024
Platyfish	MODERN SPECIES	15	st3gal5 (ENSXMAG00000004033)	POLR1A (ENSXMAG00000004032)	ptcd3 (ENSXMAG00000004008)	ENSXMAG00000003965	CNGA2 (ENSXMAG00000003954)	ENSXMAG00000003939	snx25 (ENSXMAG00000003919)	ENSXMAG00000027917	il1rapl2 (ENSXMAG00000003898)	ENSXMAG00000003895	ENSXMAG00000003861	ENSXMAG00000023822	hdac3 (ENSXMAG00000000849)	ENSXMAG00000000847	rab33a (ENSXMAG00000000843)	fmr1 (ENSXMAG00000000827) ##22	ENSXMAG00000015826	ENSXMAG00000015808	dcps (ENSXMAG00000021614)	ENSXMAG00000015791	LONRF3 (ENSXMAG00000015785)	commd5 (ENSXMAG00000015774)	fam199x (ENSXMAG00000015756)	smim19 (ENSXMAG00000025278)	ENSXMAG00000015740	gpr137 (ENSXMAG00000016326)	syvn1 (ENSXMAG00000016296)	smad5 (ENSXMAG00000025215)	ap1ar (ENSXMAG00000016264)	cfap100 (ENSXMAG00000016247)	gabra4 (ENSXMAG00000004117)
Poecilia	ANCESTRAL SPECIES	21	ENSGT00920000149138	ENSGT00390000016876	ENSGT00950000183097.a.a.a.f.a.b	ENSGT00940000155374.g.b	ENSGT00940000163551.i.a	ENSGT00950000182856.a.a.b	ENSGT00940000177201	ENSGT01090000260076.b.a	ENSGT00940000163421.a.d.b	ENSGT00950000183196.D.b.s.b.a	ENSGT00950000183196.D.b.s.a	ENSGT00940000159795	ENSGT00940000160487	ENSGT00940000159942.b	ENSGT00940000160863	ENSGT00950000183189.a.b.b ##22	ENSGT00950000182974.a.a.a.a	ENSGT00940000156803	ENSGT00390000003924	ENSGT00940000163031.b.b	ENSGT00440000033329.b.a.b	ENSGT00390000013770	ENSGT00440000033895	ENSGT00390000000436	ENSGT00950000183059.a	ENSGT00940000153986.b.b	ENSGT00940000157743	ENSGT00940000155437	ENSGT00940000167144	ENSGT00940000153110.B.f	ENSGT00940000159024
NAME_6	ANCESTRAL SPECIES	238												ENSGT00940000159795	ENSGT00940000160487	ENSGT00940000159942.b	ENSGT00940000160863	ENSGT00950000183189.a.b.b ##22	ENSGT00950000182974.a.a.a.a	ENSGT00940000156803	ENSGT00390000003924	ENSGT00940000163031.b.b	ENSGT00440000033329.b.a.b	ENSGT00390000013770	ENSGT00440000033895	ENSGT00390000000436	ENSGT00950000183059.a	ENSGT00940000153986.b.b	ENSGT00940000157743	ENSGT00940000155437	ENSGT00940000167144	ENSGT00940000153110.B.f	ENSGT00940000159024
Sailfin molly	MODERN SPECIES	940										ENSPLAG00000005325	HDAC3 (ENSPLAG00000005319)	ENSPLAG00000005290	ENSPLAG00000005276	ENSPLAG00000005249	rab33a (ENSPLAG00000005189)	fmr1 (ENSPLAG00000005126) ##22	ENSPLAG00000005118	ENSPLAG00000005101	ids (ENSPLAG00000005003)	dcps (ENSPLAG00000004963)	ENSPLAG00000004948	LONRF3 (ENSPLAG00000004931)	commd5 (ENSPLAG00000004918)	fam199x (ENSPLAG00000004902)	smim19 (ENSPLAG00000004880)	ENSPLAG00000004868	gpr137 (ENSPLAG00000000729)	syvn1 (ENSPLAG00000004842)	smad5 (ENSPLAG00000004817)	ap1ar (ENSPLAG00000004796)	cfap100 (ENSPLAG00000004775)
Amazon molly	MODERN SPECIES	471	zgc:110843 (ENSPFOG00000002445)	ENSPFOG00000019888	ENSPFOG00000002448	PSD2 (ENSPFOG00000002467)	PURA (ENSPFOG00000019889)	nrg2b (ENSPFOG00000002747)	ENSPFOG00000019890	eif1ad (ENSPFOG00000002981)	ctsf (ENSPFOG00000003046)	aup1 (ENSPFOG00000003188)	fnta (ENSPFOG00000003352)	ENSPFOG00000003385	HDAC3 (ENSPFOG00000003483)	ENSPFOG00000003861	rab33a (ENSPFOG00000004037)	fmr1 (ENSPFOG00000004138) ##22	ENSPFOG00000004499	ENSPFOG00000004524	ids (ENSPFOG00000004618)	ENSPFOG00000024267	dcps (ENSPFOG00000004892)	ENSPFOG00000004983	LONRF3 (ENSPFOG00000005067)	commd5 (ENSPFOG00000005235)	fam199x (ENSPFOG00000005327)	ENSPFOG00000005393	smim19 (ENSPFOG00000005570)	gpr137 (ENSPFOG00000005601)	syvn1 (ENSPFOG00000005606)	smad5 (ENSPFOG00000005752)	ap1ar (ENSPFOG00000005816)
Guppy	DUPLICATION
Guppy	MODERN SPECIES	440	POLR1A (ENSPREG00000002389)	ptcd3 (ENSPREG00000002536)	ENSPREG00000002649	CNGA2 (ENSPREG00000002728)	ENSPREG00000002940	snx25 (ENSPREG00000002955)	ENSPREG00000003010	il1rapl2 (ENSPREG00000003053)	zgc:194679 (ENSPREG00000003078)	ENSPREG00000003086	ENSPREG00000003093	ENSPREG00000003122	ENSPREG00000003155	ENSPREG00000003173	rab33a (ENSPREG00000003221)	fmr1 (ENSPREG00000003249) ##22	ENSPREG00000003285	ids (ENSPREG00000003394)	dcps (ENSPREG00000003444)	ENSPREG00000003459	LONRF3 (ENSPREG00000003538)	commd5 (ENSPREG00000003562)	fam199x (ENSPREG00000003581)	smim19 (ENSPREG00000003602)	ENSPREG00000003613	gpr137 (ENSPREG00000003634)	syvn1 (ENSPREG00000003641)	smad5 (ENSPREG00000003680)	ap1ar (ENSPREG00000003723)	cfap100 (ENSPREG00000003760)	gabra4 (ENSPREG00000003823)
Guppy	MODERN SPECIES	158																fmr1 (ENSPREG00000014149) ##22
NAME_4	ANCESTRAL SPECIES	64								ENSGT01090000260076.b.a	ENSGT00940000163421.a.d.b	ENSGT00950000183196.D.b.s.a	ENSGT00940000159795	ENSGT00940000160487	ENSGT00940000162571	ENSGT00940000159942.b	ENSGT00940000160863	ENSGT00950000183189.a.b.b ##22	ENSGT00950000182974.a.a.a.a	ENSGT00940000156803	ENSGT00390000003924	ENSGT00940000163031.b.b	ENSGT00440000033329.b.a.b	ENSGT00390000013770	ENSGT00440000033895	ENSGT00390000000436	ENSGT00950000183059.a	ENSGT00940000153986.b.b	ENSGT00940000157743	ENSGT00940000155437	ENSGT00940000167144	ENSGT00940000153110.B.f	ENSGT00940000159024
Mummichog	MODERN SPECIES	280							il1rapl2 (ENSFHEG00000022369)	ENSFHEG00000022330	ENSFHEG00000022316	ENSFHEG00000022258	HDAC3 (ENSFHEG00000022243)	ENSFHEG00000022185	ENSFHEG00000022162	ENSFHEG00000022148	rab33a (ENSFHEG00000022141)	fmr1 (ENSFHEG00000000636) ##22	ENSFHEG00000022097	ids (ENSFHEG00000000663)	dcps (ENSFHEG00000021972)	ENSFHEG00000000874
Sheepshead minnow	MODERN SPECIES	560									ENSCVAG00000011816	ENSCVAG00000011795	ENSCVAG00000011761	HDAC3 (ENSCVAG00000011733)	ENSCVAG00000011695	rab33a (ENSCVAG00000011665)	ENSCVAG00000011659	fmr1 (ENSCVAG00000011644) ##22	AFF2 (ENSCVAG00000011467)	ids (ENSCVAG00000011418)	dcps (ENSCVAG00000011377)
Percomorphaceae_C	ANCESTRAL SPECIES	16	ENSGT00390000016876	ENSGT00950000183097.a.a.a.f.a.b	ENSGT00940000155374.g.b	ENSGT00940000163551.i.a	ENSGT00950000182856.a.a.b	ENSGT00940000177201	ENSGT00390000015084.c.b	ENSGT01090000260076.b.a	ENSGT00940000163421.a.d.b	ENSGT00950000183196.D.b	ENSGT00940000159795	ENSGT00940000165542	ENSGT00940000160487	ENSGT00940000159942.b	ENSGT00940000160863	ENSGT00950000183189.a.b.b ##22	ENSGT00950000182974.a.a.a.a	ENSGT00940000156803	ENSGT00390000003924	ENSGT00940000163031.b.b	ENSGT00440000033329.b.a.b	ENSGT00390000013770	ENSGT00440000033895	ENSGT00390000000436	ENSGT00950000183059.a	ENSGT00940000153986.b.b	ENSGT00940000157743	ENSGT00940000155437	ENSGT00940000167144	ENSGT00940000153110.B.f	ENSGT00940000159024
Eupercaria	ANCESTRAL SPECIES	12	ENSGT00390000016876	ENSGT00950000183097.a.a.a.f.a.b	ENSGT00940000155374.g.b	ENSGT00940000163551.i.a	ENSGT00950000182856.a.a.b	ENSGT00940000177201	ENSGT00390000015084.c.b	ENSGT01090000260076.b.a	ENSGT00940000163421.a.d.b	ENSGT00950000183196.D.b	ENSGT00940000159795	ENSGT00940000165542	ENSGT00940000160487	ENSGT00940000159942.b	ENSGT00940000160863	ENSGT00950000183189.a.b.b ##22	ENSGT00950000182974.a.a.a.a	ENSGT00940000156803	ENSGT00390000003924	ENSGT00940000163031.b.b	ENSGT00440000033329.b.a.b	ENSGT00390000013770	ENSGT00440000033895	ENSGT00390000000436	ENSGT00950000183059.a	ENSGT00940000153986.b.b	ENSGT00940000157743	ENSGT00940000155437	ENSGT00940000167144	ENSGT00940000153110.B.f	ENSGT00940000159024
Tetraodontidae	ANCESTRAL SPECIES	317															ENSGT00940000160863	ENSGT00950000183189.a.b.b ##22
Tetraodon	DUPLICATION
Tetraodon	MODERN SPECIES	26	CLIP3 (ENSTNIG00000011174)	ENSTNIG00000000233	ENSTNIG00000011173	CAPNS1 (ENSTNIG00000011172)	zgc:101731 (ENSTNIG00000011171)	ENSTNIG00000011101	ENSTNIG00000011100	ENSTNIG00000010761	chd2 (ENSTNIG00000010760)	il1rapl2 (ENSTNIG00000010126)	rab33ba (ENSTNIG00000010125)	zgc:113425 (ENSTNIG00000000099)	ENSTNIG00000010124	HDAC3 (ENSTNIG00000010123)	rab33a (ENSTNIG00000010122)	fmr1 (ENSTNIG00000010121) ##22	FGF4 (ENSTNIG00000010120)	snx25 (ENSTNIG00000010119)	CNGA2 (ENSTNIG00000010118)	ptcd3 (ENSTNIG00000010117)	POLR1A (ENSTNIG00000010116)	st3gal5 (ENSTNIG00000001056)	ENSTNIG00000000345	acsl1b (ENSTNIG00000010115)	SLITRK4 (ENSTNIG00000010114)	ENSTNIG00000009812	fgfr1op2 (ENSTNIG00000009811)	tpbga (ENSTNIG00000009810)	TMEM222 (ENSTNIG00000009809)	ZDHHC18 (ENSTNIG00000009808)	rab42a (ENSTNIG00000009807)
Tetraodon	MODERN SPECIES	26	ssr1 (ENSTNIG00000002140)	ENSTNIG00000002141	pctp (ENSTNIG00000002142)	rtn4a (ENSTNIG00000002143)	ENSTNIG00000002144	ENSTNIG00000002145	ENSTNIG00000002146	ENSTNIG00000006222	ENSTNIG00000002147	ezh2 (ENSTNIG00000004203)	stk38a (ENSTNIG00000002148)	stk35 (ENSTNIG00000002149)	ENSTNIG00000002150	ENSTNIG00000002151	ENSTNIG00000000176	fmr1 (ENSTNIG00000002152) ##22	ENSTNIG00000002153	dnajc25 (ENSTNIG00000002154)	HDAC6 (ENSTNIG00000002155)	ENSTNIG00000002156	ENSTNIG00000002157	ENSTNIG00000002159	ENSTNIG00000002161	ENSTNIG00000002162	ENSTNIG00000000571	ccdc106a (ENSTNIG00000002163)	ENSTNIG00000002164	ENSTNIG00000002165	ENSTNIG00000000063	ENSTNIG00000001583	hlfa (ENSTNIG00000002167)
Fugu	MODERN SPECIES	5	hars (ENSTRUG00000009144)	ENSTRUG00000009108	trappc11 (ENSTRUG00000008668)	setd7 (ENSTRUG00000008535)	ENSTRUG00000008281	ENSTRUG00000029520	ENSTRUG00000019580	hspa9 (ENSTRUG00000007906)	zgc:113425 (ENSTRUG00000031780)	il1rapl2 (ENSTRUG00000007177)	rab33ba (ENSTRUG00000007036)	zgc:113425 (ENSTRUG00000028514)	ENSTRUG00000006892	HDAC3 (ENSTRUG00000032750)	rab33a (ENSTRUG00000020335)	fmr1 (ENSTRUG00000005362) ##22	FGF4 (ENSTRUG00000005334)	snx25 (ENSTRUG00000005163)	CNGA2 (ENSTRUG00000004575)	ENSTRUG00000030595	ptcd3 (ENSTRUG00000003939)	POLR1A (ENSTRUG00000002210)	ENSTRUG00000032892	st3gal5 (ENSTRUG00000030641)	flr (ENSTRUG00000002112)	acsl1b (ENSTRUG00000002168)	ENSTRUG00000031067	ENSTRUG00000032220	ENSTRUG00000028561	ENSTRUG00000029457	ENSTRUG00000026218
Eupecaria_A	ANCESTRAL SPECIES	13	ENSGT00390000016876	ENSGT00950000183097.a.a.a.f.a.b	ENSGT00940000155374.g.b	ENSGT00940000163551.i.a	ENSGT00950000182856.a.a.b	ENSGT00940000177201	ENSGT00390000015084.c.b	ENSGT01090000260076.b.a	ENSGT00940000163421.a.d.b	ENSGT00950000183196.D.b	ENSGT00940000159795	ENSGT00940000165542	ENSGT00940000160487	ENSGT00940000159942.b	ENSGT00940000160863	ENSGT00950000183189.a.b.b ##22	ENSGT00950000182974.a.a.a.a	ENSGT00940000156803	ENSGT00390000003924	ENSGT00940000163031.b.b	ENSGT00440000033329.b.a.b	ENSGT00390000013770	ENSGT00440000033895	ENSGT00390000000436	ENSGT00950000183059.a	ENSGT00940000153986.b.b	ENSGT00940000157743	ENSGT00940000155437	ENSGT00940000167144	ENSGT00940000153110.B.f	ENSGT00940000159024
Ballan wrasse	MODERN SPECIES	67	CNGA2 (ENSLBEG00000015182)	ENSLBEG00000015159	ENSLBEG00000015134	ENSLBEG00000015111	snx25 (ENSLBEG00000014990)	ENSLBEG00000014894	il1rapl2 (ENSLBEG00000014751)	zgc:194679 (ENSLBEG00000014693)	ENSLBEG00000014637	ENSLBEG00000014606	ENSLBEG00000014591	HDAC3 (ENSLBEG00000014544)	ENSLBEG00000014488	ENSLBEG00000014463	rab33a (ENSLBEG00000014427)	fmr1 (ENSLBEG00000014381) ##22	ENSLBEG00000014344	ids (ENSLBEG00000014277)	dcps (ENSLBEG00000014244)	ENSLBEG00000014153	aup1 (ENSLBEG00000014035)	fnta (ENSLBEG00000013995)	PIGG (ENSLBEG00000013933)
Eupecaria_B	ANCESTRAL SPECIES	13	ENSGT00920000149138	ENSGT00390000016876	ENSGT00950000183097.a.a.a.f.a.b	ENSGT00940000155374.g.b	ENSGT00940000163551.i.a	ENSGT00950000182856.a.a.b	ENSGT00940000177201	ENSGT00390000015084.c.b	ENSGT01090000260076.b.a	ENSGT00940000163421.a.d.b	ENSGT00950000183196.D.b	ENSGT00940000159795	ENSGT00940000165542	ENSGT00940000159942.b	ENSGT00940000160863	ENSGT00950000183189.a.b.b ##22	ENSGT00950000182974.a.a.a.a	ENSGT00940000156803	ENSGT00390000003924	ENSGT00940000163031.b.b	ENSGT00440000033329.b.a.b	ENSGT00390000013770	ENSGT00440000033895	ENSGT00390000000436	ENSGT00950000183059.a	ENSGT00940000153986.b.b	ENSGT00940000157743	ENSGT00940000155437	ENSGT00940000167144	ENSGT00940000153110.B.f	ENSGT00940000159024
Eupecaria_C	ANCESTRAL SPECIES	12	ENSGT00390000016876	ENSGT00950000183097.a.a.a.f.a.b	ENSGT00940000155374.g.b	ENSGT00940000163551.i.a	ENSGT00950000182856.a.a.b	ENSGT00940000177201	ENSGT00390000015084.c.b	ENSGT01090000260076.b.a	ENSGT00940000163421.a.d.b	ENSGT00950000183196.D.b	ENSGT00940000159795	ENSGT00940000165542	ENSGT00940000160487	ENSGT00940000159942.b	ENSGT00940000160863	ENSGT00950000183189.a.b.b ##22	ENSGT00950000182974.a.a.a.a	ENSGT00940000156803	ENSGT00390000003924	ENSGT00940000163031.b.b	ENSGT00440000033329.b.a.b	ENSGT00390000013770	ENSGT00440000033895	ENSGT00390000000436	ENSGT00950000183059.a	ENSGT00940000153986.b.b	ENSGT00940000157743	ENSGT00940000155437	ENSGT00940000167144	ENSGT00940000153110.B.f	ENSGT00940000159024
Gilthead seabream	MODERN SPECIES	9	ptcd3 (ENSSAUG00010016732)	ENSSAUG00010016939	ENSSAUG00010017132	CNGA2 (ENSSAUG00010017135)	ENSSAUG00010017136	snx25 (ENSSAUG00010017173)	ENSSAUG00010017982	ENSSAUG00010017979	il1rapl2 (ENSSAUG00010017998)	zgc:194679 (ENSSAUG00010018050)	ENSSAUG00010018165	ENSSAUG00010023126	hdac3 (ENSSAUG00010023132)	ENSSAUG00010023161	rab33a (ENSSAUG00010023163)	fmr1 (ENSSAUG00010023172) ##22	ENSSAUG00010023611	ids (ENSSAUG00010023617)	dcps (ENSSAUG00010023681)	ENSSAUG00010023688	LONRF3 (ENSSAUG00010023699)	commd5 (ENSSAUG00010023711)	fam199x (ENSSAUG00010023714)	ENSSAUG00010023716	ENSSAUG00010023718	smim19 (ENSSAUG00010023721)	ENSSAUG00010023724	gpr137 (ENSSAUG00010023742)	syvn1 (ENSSAUG00010023747)	smad5 (ENSSAUG00010023757)	ap1ar (ENSSAUG00010023785)
Eupercaria_incertae_sedis	ANCESTRAL SPECIES	14	ENSGT00920000149138	ENSGT00390000016876	ENSGT00950000183097.a.a.a.f.a.b	ENSGT00940000155374.g.b	ENSGT00940000163551.i.a	ENSGT00950000182856.a.a.b	ENSGT00390000015084.c.b	ENSGT01090000260076.b.a	ENSGT00940000163421.a.d.b	ENSGT00950000183196.D.b	ENSGT00940000159795	ENSGT00940000165542	ENSGT00940000160487	ENSGT00940000159942.b	ENSGT00940000160863	ENSGT00950000183189.a.b.b ##22	ENSGT00950000182974.a.a.a.a	ENSGT00940000156803	ENSGT00390000003924	ENSGT00940000163031.b.b	ENSGT00440000033329.b.a.b	ENSGT00390000013770	ENSGT00440000033895	ENSGT00390000000436	ENSGT00950000183059.a	ENSGT00940000153986.b.b	ENSGT00940000157743	ENSGT00940000155437	ENSGT00940000167144	ENSGT00940000153110.B.f	ENSGT00940000159024
European seabass	MODERN SPECIES	12	ENSDLAG00005027637	ACSL1 (ENSDLAG00005013960)	ST3GAL5 (ENSDLAG00005013896)	ENSDLAG00005011769	PTCD3 (ENSDLAG00005011664)	ENSDLAG00005010305	ENSDLAG00005010149	ENSDLAG00005010119	ENSDLAG00005009414	ENSDLAG00005008920	ENSDLAG00005008898	ENSDLAG00005008846	ENSDLAG00005008808	ENSDLAG00005013499	ENSDLAG00005008778	ENSDLAG00005008727 ##22	ids (ENSDLAG00005008634)	ENSDLAG00005008622	ENSDLAG00005008572	ENSDLAG00005008440	ENSDLAG00005008427	ENSDLAG00005027786	ENSDLAG00005008371	ENSDLAG00005008365	ENSDLAG00005008273	gpr137 (ENSDLAG00005008262)	syvn1 (ENSDLAG00005008199)	smad5 (ENSDLAG00005008085)	ap1ar (ENSDLAG00005008027)	ENSDLAG00005007998	gabra4 (ENSDLAG00005034250)
Large yellow croaker	MODERN SPECIES		eif1ad (ENSLCRG00005006419)	ENSLCRG00005006418	ap1ar (ENSLCRG00005006417)	smad5 (ENSLCRG00005006357)	gabra4 (ENSLCRG00005006352)	ENSLCRG00005006078	ENSLCRG00005006076	GUF1 (ENSLCRG00005005229)	PIGG (ENSLCRG00005005216)	fnta (ENSLCRG00005005212)	aup1 (ENSLCRG00005005208)	ctsf (ENSLCRG00005005206)	ctsf (ENSLCRG00005005154)	ENSLCRG00005005152	rab33a (ENSLCRG00005005151)	fmr1 (ENSLCRG00005005099) ##22	ENSLCRG00005005093	ids (ENSLCRG00005005084)	dcps (ENSLCRG00005005081)	ENSLCRG00005005079	LONRF3 (ENSLCRG00005005070)	ENSLCRG00005005069	ENSLCRG00005005068	fam199x (ENSLCRG00005005065)	ENSLCRG00005005064	smim19 (ENSLCRG00005005062)	ENSLCRG00005005024	gpr137 (ENSLCRG00005005020)	syvn1 (ENSLCRG00005005008)	ENSLCRG00005005003	hdac3 (ENSLCRG00005004244)
Perciformes	ANCESTRAL SPECIES	13	ENSGT00940000157929	ENSGT00920000149138	ENSGT00390000016876	ENSGT00950000183097.a.a.a.f.a.b	ENSGT00940000155374.g.b	ENSGT00940000163551.i.a	ENSGT00950000182856.a.a.b	ENSGT00940000177201	ENSGT01090000260076.b.a	ENSGT00940000163421.a.d.b	ENSGT00950000183196.D.b	ENSGT00940000159795	ENSGT00940000165542	ENSGT00940000159942.b	ENSGT00940000160863	ENSGT00950000183189.a.b.b ##22	ENSGT00950000182974.a.a.a.a	ENSGT00940000156803	ENSGT00390000003924	ENSGT00940000163031.b.b	ENSGT00440000033329.b.a.b	ENSGT00390000013770	ENSGT00440000033895	ENSGT00390000000436	ENSGT00950000183059.a	ENSGT00940000153986.b.b	ENSGT00940000157743	ENSGT00940000155437	ENSGT00940000167144	ENSGT00940000153110.B.f	ENSGT00940000159024
Cottioidei	ANCESTRAL SPECIES	9	ENSGT00940000177201	ENSGT00950000182856.a.a.b	ENSGT00940000163551.i.a	ENSGT00940000155374.g.b	ENSGT00950000183097.a.a.a.f.a.b	ENSGT00390000016876	ENSGT00920000149138	ENSGT00940000157929	ENSGT00940000154508.a.a.s.b	ENSGT00390000015511	ENSGT00940000153232.a.b.b	ENSGT00940000159063	ENSGT00940000160971	ENSGT00940000159942.b	ENSGT00940000160863	ENSGT00950000183189.a.b.b ##22	ENSGT00950000182974.a.a.a.a	ENSGT00940000156803	ENSGT00390000003924	ENSGT00940000163031.b.b	ENSGT00440000033329.b.a.b	ENSGT00390000013770	ENSGT00440000033895	ENSGT00390000000436	ENSGT00950000183059.a	ENSGT00940000153986.b.b	ENSGT00940000157743	ENSGT00940000155437	ENSGT00940000167144	ENSGT00940000153110.B.f	ENSGT00940000159024
Stickleback	MODERN SPECIES	3	POLR1A (ENSGACG00000018791)	st3gal5 (ENSGACG00000018789)	acsl1b (ENSGACG00000018774)	CASP3 (ENSGACG00000018770)	CASP3 (ENSGACG00000018769)	CASP3 (ENSGACG00000018765)	irf2 (ENSGACG00000018763)	ENSGACG00000018762	ENSGACG00000018760	SLITRK4 (ENSGACG00000018757)	ENSGACG00000018756	ssr1 (ENSGACG00000018755)	HDAC3 (ENSGACG00000018752)	ENSGACG00000018748	rab33a (ENSGACG00000018745)	fmr1 (ENSGACG00000018742) ##22	ENSGACG00000018740	ids (ENSGACG00000018736)	dcps (ENSGACG00000018734)	ENSGACG00000018733	LONRF3 (ENSGACG00000018731)	commd5 (ENSGACG00000018730)	fam199x (ENSGACG00000018729)	smim19 (ENSGACG00000018728)	ENSGACG00000018727	ENSGACG00000018726	gpr137 (ENSGACG00000018724)	syvn1 (ENSGACG00000018723)	smad5 (ENSGACG00000018718)	ap1ar (ENSGACG00000018714)	cfap100 (ENSGACG00000018712)
Lumpfish	MODERN SPECIES	1	ENSCLMG00005008455	CNGA2 (ENSCLMG00005008456)	ENSCLMG00005008520	ptcd3 (ENSCLMG00005008965)	POLR1A (ENSCLMG00005008969)	st3gal5 (ENSCLMG00005008996)	acsl1b (ENSCLMG00005009025)	ENSCLMG00005015053	CASP3 (ENSCLMG00005015054)	irf2 (ENSCLMG00005015056)	ENSCLMG00005015057	SLITRK4 (ENSCLMG00005015058)	hdac3 (ENSCLMG00005015063)	ENSCLMG00005017625	rab33a (ENSCLMG00005017629)	fmr1 (ENSCLMG00005017630) ##22	ENSCLMG00005017637	ids (ENSCLMG00005018339)	dcps (ENSCLMG00005018340)	ENSCLMG00005018342	LONRF3 (ENSCLMG00005018346)	commd5 (ENSCLMG00005018349)	fam199x (ENSCLMG00005018351)	smim19 (ENSCLMG00005018355)	ENSCLMG00005018357	gpr137 (ENSCLMG00005018358)	syvn1 (ENSCLMG00005018362)	smad5 (ENSCLMG00005018363)	ap1ar (ENSCLMG00005018371)	ENSCLMG00005018373	gabra4 (ENSCLMG00005018376)
Perciformes_a	ANCESTRAL SPECIES	11	ENSGT00390000016876	ENSGT00950000183097.a.a.a.f.a.b	ENSGT00940000155374.g.b	ENSGT00940000163551.i.a	ENSGT00950000182856.a.a.b	ENSGT00390000015084.c.b	ENSGT01090000260076.b.a	ENSGT00940000163421.a.d.b	ENSGT00950000183196.D.b	ENSGT00940000159795	ENSGT00940000160487	ENSGT00940000162571	ENSGT00940000165542	ENSGT00940000159942.b	ENSGT00940000160863	ENSGT00950000183189.a.b.b ##22	ENSGT00950000182974.a.a.a.a	ENSGT00940000156803	ENSGT00390000003924	ENSGT00940000163031.b.b	ENSGT00440000033329.b.a.b	ENSGT00390000013770	ENSGT00440000033895	ENSGT00390000000436	ENSGT00950000183059.a	ENSGT00940000153986.b.b	ENSGT00940000157743	ENSGT00940000155437	ENSGT00940000167144	ENSGT00940000153110.B.f	ENSGT00940000159024
Channel bull blenny	MODERN SPECIES	1	ptcd3 (ENSCGOG00000021907)	ENSCGOG00000021787	CNGA2 (ENSCGOG00000021759)	ENSCGOG00000021755	snx25 (ENSCGOG00000021570)	ENSCGOG00000021556	ENSCGOG00000021554	il1rapl2 (ENSCGOG00000021505)	zgc:194679 (ENSCGOG00000021498)	ENSCGOG00000016922	ENSCGOG00000016700	hdac3 (ENSCGOG00000013662)	ENSCGOG00000013604	ENSCGOG00000013597	rab33a (ENSCGOG00000013593)	fmr1 (ENSCGOG00000012601) ##22	AFF2 (ENSCGOG00000012588)	ids (ENSCGOG00000012580)	ENSCGOG00000011977	dcps (ENSCGOG00000011959)	ENSCGOG00000011955	LONRF3 (ENSCGOG00000011929)	commd5 (ENSCGOG00000011920)	fam199x (ENSCGOG00000011908)	smim19 (ENSCGOG00000011905)	ENSCGOG00000011888	gpr137 (ENSCGOG00000011885)	syvn1 (ENSCGOG00000011640)	smad5 (ENSCGOG00000011562)	ap1ar (ENSCGOG00000011558)	ENSCGOG00000011553
Pike perch	MODERN SPECIES	52	ENSSLUG00000013215	snx25 (ENSSLUG00000012013)	ENSSLUG00000011955	ENSSLUG00000011953	ENSSLUG00000011951	ENSSLUG00000011948	ENSSLUG00000011939	il1rapl2 (ENSSLUG00000011929)	zgc:194679 (ENSSLUG00000011922)	ENSSLUG00000011886	MYOT (ENSSLUG00000011869)	HDAC3 (ENSSLUG00000011799)	ENSSLUG00000011783	ENSSLUG00000011760	rab33a (ENSSLUG00000011749)	fmr1 (ENSSLUG00000011289) ##22	AFF2 (ENSSLUG00000011246)	ENSSLUG00000011235	ids (ENSSLUG00000010729)	dcps (ENSSLUG00000010695)	ENSSLUG00000010682	LONRF3 (ENSSLUG00000010651)	commd5 (ENSSLUG00000010644)	fam199x (ENSSLUG00000010600)	smim19 (ENSSLUG00000010590)	ENSSLUG00000010585	gpr137 (ENSSLUG00000010580)	syvn1 (ENSSLUG00000010528)	smad5 (ENSSLUG00000010439)	ap1ar (ENSSLUG00000010421)	ENSSLUG00000010411
Percomorphaceae_D	ANCESTRAL SPECIES	17	ENSGT00920000149138	ENSGT00390000016876	ENSGT00950000183097.a.a.a.f.a.b	ENSGT00940000155374.g.b	ENSGT00940000164070.a	ENSGT00950000182856.a.a.b	ENSGT00940000177201	ENSGT01090000260076.b.a	ENSGT00940000163421.a.d.b	ENSGT00950000183196.D.b	ENSGT00940000159795	ENSGT00940000165542	ENSGT00940000160487	ENSGT00940000159942.b	ENSGT00940000160863	ENSGT00950000183189.a.b.b ##22	ENSGT00950000182974.a.a.a.a	ENSGT00940000156803	ENSGT00390000003924	ENSGT00940000163031.b.b	ENSGT00440000033329.b.a.b	ENSGT00390000013770	ENSGT00440000033895	ENSGT00390000000436	ENSGT00950000183059.a	ENSGT00940000153986.b.b	ENSGT00940000157743	ENSGT00940000155437	ENSGT00940000167144	ENSGT00940000153110.B.f	ENSGT00940000159024
Anabantaria	ANCESTRAL SPECIES	15	ENSGT00940000157929	ENSGT00920000149138	ENSGT00390000016876	ENSGT00950000183097.a.a.a.f.a.b	ENSGT00940000155374.g.b	ENSGT00940000164070.a	ENSGT00950000182856.a.a.b	ENSGT00390000015084.c.b	ENSGT01090000260076.b.a	ENSGT00940000163421.a.d.b	ENSGT00950000183196.D.b	ENSGT00940000159795	ENSGT00940000165542	ENSGT00940000159942.b	ENSGT00940000160863	ENSGT00950000183189.a.b.b ##22	ENSGT00950000182974.a.a.a.a	ENSGT00940000156803	ENSGT00390000003924	ENSGT00940000163031.b.b	ENSGT00440000033329.b.a.b	ENSGT00390000013770	ENSGT00440000033895	ENSGT00390000000436	ENSGT00950000183059.a	ENSGT00940000153986.b.b	ENSGT00940000157743	ENSGT00940000155437	ENSGT00940000167144	ENSGT00940000153110.B.f	ENSGT00940000159024
Anabantoidei	ANCESTRAL SPECIES	11	ENSGT00920000149138	ENSGT00390000016876	ENSGT00950000183097.a.a.a.f.a.b	ENSGT00940000155374.g.b	ENSGT00940000164070.a	ENSGT00950000182856.a.a.b	ENSGT00940000177201	ENSGT01090000260076.b.a	ENSGT00940000163421.a.d.b	ENSGT00950000183196.D.b	ENSGT00940000159795	ENSGT00940000165542	ENSGT00940000160487	ENSGT00940000159942.b	ENSGT00940000160863	ENSGT00950000183189.a.b.b ##22	ENSGT00950000182974.a.a.a.a	ENSGT00940000156803	ENSGT00390000003924	ENSGT00940000163031.b.b	ENSGT00440000033329.b.a.b	ENSGT00390000013770	ENSGT00440000033895	ENSGT00390000000436	ENSGT00950000183059.a	ENSGT00940000153986.b.b	ENSGT00940000157743	ENSGT00940000155437	ENSGT00940000167144	ENSGT00940000153110.B.f	ENSGT00940000159024
Climbing perch	MODERN SPECIES	1	PTCD3 (ENSATEG00000016950)	ENSATEG00000016988	ENSATEG00000017043	ENSATEG00000017091	ENSATEG00000017197	ENSATEG00000028948	ENSATEG00000017319	ENSATEG00000017333	ENSATEG00000028361	ENSATEG00000017390	ENSATEG00000017460	HDAC3 (ENSATEG00000025701)	ENSATEG00000030082	ENSATEG00000027939	ENSATEG00000017702	fmr1 (ENSATEG00000017772) ##22	ENSATEG00000017794	ids (ENSATEG00000017826)	ENSATEG00000017854	ENSATEG00000017886	ENSATEG00000017941	ENSATEG00000017951	ENSATEG00000017964	ENSATEG00000028229	ENSATEG00000017987	gpr137 (ENSATEG00000018018)	syvn1 (ENSATEG00000018027)	smad5 (ENSATEG00000018057)	ap1ar (ENSATEG00000018090)	ENSATEG00000030039	gabra4 (ENSATEG00000026740)
Siamese fighting fish	MODERN SPECIES	1	hars (ENSBSLG00000010095)	ENSBSLG00000010300	gfra3 (ENSBSLG00000010612)	ENSBSLG00000010680	ENSBSLG00000010699	ENSBSLG00000010714	il1rapl2 (ENSBSLG00000010846)	ENSBSLG00000011007	zgc:194679 (ENSBSLG00000011014)	ENSBSLG00000011034	ENSBSLG00000011166	hdac3 (ENSBSLG00000011189)	ENSBSLG00000011238	ENSBSLG00000011248	rab33a (ENSBSLG00000011275)	fmr1 (ENSBSLG00000011283) ##22	ENSBSLG00000011329	ids (ENSBSLG00000011348)	ENSBSLG00000011704	ENSBSLG00000011896	ENSBSLG00000011913	dcps (ENSBSLG00000011922)	ENSBSLG00000011942	LONRF3 (ENSBSLG00000012064)	commd5 (ENSBSLG00000012118)	fam199x (ENSBSLG00000012139)	smim19 (ENSBSLG00000012206)	ENSBSLG00000012227	gpr137 (ENSBSLG00000012247)	syvn1 (ENSBSLG00000012292)	smad5 (ENSBSLG00000012329)
Zig-zag eel	MODERN SPECIES	1	ENSMAMG00000001183	ENSMAMG00000001159	ENSMAMG00000001144	setd7 (ENSMAMG00000001118)	ENSMAMG00000001111	rab33ba (ENSMAMG00000001098)	ENSMAMG00000001081	ENSMAMG00000027954	ENSMAMG00000001046	ENSMAMG00000000970	ENSMAMG00000000926	ENSMAMG00000000912	ENSMAMG00000000893	ENSMAMG00000000865	ENSMAMG00000000825	fmr1 (ENSMAMG00000000787) ##22	ENSMAMG00000000771	ENSMAMG00000000756	ids (ENSMAMG00000000714)	ENSMAMG00000000698	ENSMAMG00000000623	ENSMAMG00000000589	ENSMAMG00000000565	ENSMAMG00000000558	ENSMAMG00000000517	ENSMAMG00000000413	ENSMAMG00000016851	ENSMAMG00000016824	ENSMAMG00000016804	ENSMAMG00000026276	ENSMAMG00000016798
Carangaria	ANCESTRAL SPECIES	15	ENSGT00920000149138	ENSGT00390000016876	ENSGT00950000183097.a.a.a.f.a.b	ENSGT00940000155374.g.b	ENSGT00940000164070.a	ENSGT00950000182856.a.a.b	ENSGT00940000177201	ENSGT01090000260076.b.a	ENSGT00940000163421.a.d.b	ENSGT00950000183196.D.b	ENSGT00940000159795	ENSGT00940000165542	ENSGT00940000160487	ENSGT00940000159942.b	ENSGT00940000160863	ENSGT00950000183189.a.b.b ##22	ENSGT00950000182974.a.a.a.a	ENSGT00940000156803	ENSGT00390000003924	ENSGT00940000163031.b.b	ENSGT00440000033329.b.a.b	ENSGT00390000013770	ENSGT00440000033895	ENSGT00390000000436	ENSGT00950000183059.a	ENSGT00940000153986.b.b	ENSGT00940000157743	ENSGT00940000155437	ENSGT00940000167144	ENSGT00940000153110.B.f	ENSGT00940000159024
Carangaria_A	ANCESTRAL SPECIES	22	ENSGT00940000157929	ENSGT00920000149138	ENSGT00390000016876	ENSGT00950000183097.a.a.a.f.a.b	ENSGT00940000155374.g.b	ENSGT00940000164070.a	ENSGT00950000182856.a.a.b	ENSGT00940000177201	ENSGT01090000260076.b.a	ENSGT00940000163421.a.d.b	ENSGT00950000183196.D.b	ENSGT00940000159795	ENSGT00940000160487	ENSGT00940000159942.b	ENSGT00940000160863	ENSGT00950000183189.a.b.b ##22	ENSGT00950000182974.a.a.a.a	ENSGT00940000156803	ENSGT00390000003924	ENSGT00940000163031.b.b	ENSGT00440000033329.b.a.b	ENSGT00390000013770	ENSGT00440000033895	ENSGT00390000000436	ENSGT00950000183059.a	ENSGT00940000153986.b.b	ENSGT00940000157743	ENSGT00940000155437	ENSGT00940000167144	ENSGT00940000153110.B.f	ENSGT00940000159024
Seriola	ANCESTRAL SPECIES	22	ENSGT00940000157929	ENSGT00920000149138	ENSGT00390000016876	ENSGT00950000183097.a.a.a.f.a.b	ENSGT00940000155374.g.b	ENSGT00940000164070.a	ENSGT00950000182856.a.a.b	ENSGT00940000177201	ENSGT01090000260076.b.a	ENSGT00940000163421.a.d.b	ENSGT00950000183196.D.b	ENSGT00940000159795	ENSGT00940000160487	ENSGT00940000159942.b	ENSGT00940000160863	ENSGT00950000183189.a.b.b ##22	ENSGT00950000182974.a.a.a.a	ENSGT00940000156803	ENSGT00390000003924	ENSGT00940000163031.b.b	ENSGT00440000033329.b.a.b	ENSGT00390000013770	ENSGT00440000033895	ENSGT00390000000436	ENSGT00950000183059.a	ENSGT00940000153986.b.b	ENSGT00940000157743	ENSGT00940000155437	ENSGT00940000167144	ENSGT00940000153110.B.f	ENSGT00940000159024
Yellowtail amberjack	MODERN SPECIES	3258														ENSSLDG00000021978	rab33a (ENSSLDG00000022004)	fmr1 (ENSSLDG00000022042) ##22	ENSSLDG00000022289	ENSSLDG00000022303	ENSSLDG00000022327	ids (ENSSLDG00000022346)	dcps (ENSSLDG00000022373)	ENSSLDG00000022386	ENSSLDG00000022437	commd5 (ENSSLDG00000022461)	fam199x (ENSSLDG00000022488)	ENSSLDG00000022515	smim19 (ENSSLDG00000022538)	gpr137 (ENSSLDG00000022550)	syvn1 (ENSSLDG00000022582)	smad5 (ENSSLDG00000022603)	ap1ar (ENSSLDG00000022626)
Greater amberjack	MODERN SPECIES	67	st3gal5 (ENSSDUG00000014689)	POLR1A (ENSSDUG00000014631)	ptcd3 (ENSSDUG00000014567)	ENSSDUG00000014516	CNGA2 (ENSSDUG00000014491)	ENSSDUG00000014470	snx25 (ENSSDUG00000014434)	ENSSDUG00000014371	il1rapl2 (ENSSDUG00000014285)	zgc:194679 (ENSSDUG00000014233)	ENSSDUG00000014142	ENSSDUG00000014068	HDAC3 (ENSSDUG00000014029)	ENSSDUG00000013982	rab33a (ENSSDUG00000013968)	fmr1 (ENSSDUG00000013947) ##22	ENSSDUG00000013932	ids (ENSSDUG00000013858)	dcps (ENSSDUG00000013850)	ENSSDUG00000013825	ENSSDUG00000013804	commd5 (ENSSDUG00000013777)	fam199x (ENSSDUG00000013754)	smim19 (ENSSDUG00000013741)	ENSSDUG00000013699	gpr137 (ENSSDUG00000013666)	syvn1 (ENSSDUG00000013629)	smad5 (ENSSDUG00000013611)	ap1ar (ENSSDUG00000013561)	ENSSDUG00000013504	gabra4 (ENSSDUG00000013478)
Barramundi perch	MODERN SPECIES	40		POLR1A (ENSLCAG00010026025)	ptcd3 (ENSLCAG00010026016)	PLS3 (ENSLCAG00010025924)	CNGA2 (ENSLCAG00010025753)	ENSLCAG00010025709	snx25 (ENSLCAG00010025674)	ENSLCAG00010025641	il1rapl2 (ENSLCAG00010025622)	zgc:194679 (ENSLCAG00010025611)	ENSLCAG00010025567	ENSLCAG00010025510	hdac3 (ENSLCAG00010025496)	ENSLCAG00010025469	rab33a (ENSLCAG00010025466)	fmr1 (ENSLCAG00010025462) ##22	ENSLCAG00010025441	ids (ENSLCAG00010025432)	dcps (ENSLCAG00010025425)	ENSLCAG00010025416	LONRF3 (ENSLCAG00010025392)	commd5 (ENSLCAG00010025376)	fam199x (ENSLCAG00010025371)	smim19 (ENSLCAG00010025368)	ENSLCAG00010025334	gpr137 (ENSLCAG00010025316)	syvn1 (ENSLCAG00010025294)	smad5 (ENSLCAG00010025270)	ap1ar (ENSLCAG00010025254)	ENSLCAG00010025244	gabra4 (ENSLCAG00010025236)
Pleuronectoidei	ANCESTRAL SPECIES	18	ENSGT00920000149138	ENSGT00390000016876	ENSGT00950000183097.a.a.a.f.a.b	ENSGT00940000155374.g.b	ENSGT00940000164070.a	ENSGT00950000182856.a.a.b	ENSGT00940000177201	ENSGT01090000260076.b.a	ENSGT00940000163421.a.d.b	ENSGT00950000183196.D.b	ENSGT00940000159795	ENSGT00940000165542	ENSGT00940000160487	ENSGT00940000159942.b	ENSGT00940000160863	ENSGT00950000183189.a.b.b ##22	ENSGT00950000182974.a.a.a.a	ENSGT00940000156803	ENSGT00390000003924	ENSGT00940000163031.b.b	ENSGT00440000033329.b.a.b	ENSGT00390000013770	ENSGT00440000033895	ENSGT00390000000436	ENSGT00950000183059.a	ENSGT00940000153986.b.b	ENSGT00940000157743	ENSGT00940000155437	ENSGT00940000167144	ENSGT00940000153110.B.f	ENSGT00940000159024
Tongue sole	MODERN SPECIES	6	dctn4 (ENSCSEG00000016071)	ENSCSEG00000016132	ENSCSEG00000016140	tspan17 (ENSCSEG00000016149)	ctnna1 (ENSCSEG00000016166)	ENSCSEG00000016183	LRRTM2 (ENSCSEG00000016191)	sncb (ENSCSEG00000016200)	ENSCSEG00000016209	ENSCSEG00000016212	ENSCSEG00000016220	HDAC3 (ENSCSEG00000016239)	ENSCSEG00000016269	ENSCSEG00000016279	rab33a (ENSCSEG00000016284)	fmr1 (ENSCSEG00000016308) ##22	ENSCSEG00000016434	ids (ENSCSEG00000016791)	dcps (ENSCSEG00000016877)	dcps (ENSCSEG00000016894)	ENSCSEG00000016912	fnta (ENSCSEG00000016931)	aup1 (ENSCSEG00000016943)	ctsf (ENSCSEG00000016954)	eif1ad (ENSCSEG00000016964)	ENSCSEG00000016970	ENSCSEG00000016971	nrg2b (ENSCSEG00000016983)	PURA (ENSCSEG00000017000)	PSD2 (ENSCSEG00000017007)	ENSCSEG00000017037
Turbot	MODERN SPECIES	4	ACSL1 (ENSSMAG00000014521)	ST3GAL5 (ENSSMAG00000014487)	ENSSMAG00000014342	PTCD3 (ENSSMAG00000014274)	ENSSMAG00000014188	ENSSMAG00000014170	ENSSMAG00000014164	ENSSMAG00000014099	ENSSMAG00000013972	ENSSMAG00000036602	ENSSMAG00000013900	ENSSMAG00000013862	ENSSMAG00000013850	ENSSMAG00000013738	ENSSMAG00000021788	fmr1 (ENSSMAG00000013698) ##22	ENSSMAG00000013634	ids (ENSSMAG00000013609)	ENSSMAG00000013606	ENSSMAG00000013564	ENSSMAG00000013535	ENSSMAG00000013514	ENSSMAG00000013495	ENSSMAG00000013482	ENSSMAG00000013306	gpr137 (ENSSMAG00000013297)	syvn1 (ENSSMAG00000013258)	smad5 (ENSSMAG00000013242)	ap1ar (ENSSMAG00000034216)	ENSSMAG00000013203	gabra4 (ENSSMAG00000013192)
Pinecone sodierfish	MODERN SPECIES	1	ENSMMDG00005008909	CTNND1 (ENSMMDG00005008920)	ENSMMDG00005008998	SLC43A3 (ENSMMDG00005009002)	snx25 (ENSMMDG00005009059)	ENSMMDG00005010587	il1rapl2 (ENSMMDG00005010594)	zgc:194679 (ENSMMDG00005010603)	ENSMMDG00005010606	ENSMMDG00005010608	ENSMMDG00005010611	hdac3 (ENSMMDG00005010654)	ENSMMDG00005013824	ENSMMDG00005013827	rab33a (ENSMMDG00005013829)	fmr1 (ENSMMDG00005013835) ##22	ENSMMDG00005014115	ENSMMDG00005014122	ENSMMDG00005014123	ids (ENSMMDG00005014128)	dcps (ENSMMDG00005014137)	ENSMMDG00005014148	LONRF3 (ENSMMDG00005014152)	commd5 (ENSMMDG00005014157)	fam199x (ENSMMDG00005014162)	smim19 (ENSMMDG00005014171)	ENSMMDG00005014172	ENSMMDG00005014174	gpr137 (ENSMMDG00005014176)	syvn1 (ENSMMDG00005014181)	smad5 (ENSMMDG00005014191)
Cod	MODERN SPECIES	1	ENSGMOG00000033721	CASP3 (ENSGMOG00000016710)	CASP3 (ENSGMOG00000035959)	CASP3 (ENSGMOG00000033551)	irf2 (ENSGMOG00000016692)	snx25 (ENSGMOG00000005477)	ENSGMOG00000036878	ENSGMOG00000002901	ENSGMOG00000036718	ENSGMOG00000001600	ENSGMOG00000001585	ENSGMOG00000001416	ENSGMOG00000031581	ENSGMOG00000006189	ENSGMOG00000036873	fmr1 (ENSGMOG00000006141) ##22	ENSGMOG00000006067	ids (ENSGMOG00000006046)	ENSGMOG00000006034	ENSGMOG00000033793	ENSGMOG00000028898	ENSGMOG00000005916	ENSGMOG00000005900	ENSGMOG00000005892	ENSGMOG00000005860	gpr137 (ENSGMOG00000005840)	syvn1 (ENSGMOG00000005799)	smad5 (ENSGMOG00000005788)	ap1ar (ENSGMOG00000005772)	gabra4 (ENSGMOG00000005750)	ENSGMOG00000005730
Osteoglossiformes	ANCESTRAL SPECIES	150								ENSGT00550000075136	ENSGT00940000155470.a	ENSGT00390000006788.a.a	ENSGT00390000011725.c	ENSGT00940000160863	ENSGT00940000159942.b	ENSGT00940000160971.g	ENSGT00940000161248.o	ENSGT00950000183189.a.b.b ##22	ENSGT00950000182974.a.a.a.a	ENSGT00940000156803	ENSGT00390000017614	ENSGT00940000163031.b.b	ENSGT00440000033329.b.a.b	ENSGT00390000013770	ENSGT00940000160633.d	ENSGT01090000260076.b.a.w	ENSGT00950000183196.D.b	ENSGT00940000159795	ENSGT00940000165542	ENSGT00940000153441.b	ENSGT00940000160487	ENSGT00940000160541	ENSGT00510000046732.B.i
P. kingsleyae	MODERN SPECIES	176										selenot2 (ENSPKIG00000001790)	rab33a (ENSPKIG00000001765)	ENSPKIG00000001719	ENSPKIG00000001689	SLITRK4 (ENSPKIG00000001679)	SLITRK2 (ENSPKIG00000001667)	fmr1 (ENSPKIG00000001628) ##22	ENSPKIG00000001601	AFF2 (ENSPKIG00000001556)	ids (ENSPKIG00000001494)	zgc:66433 (ENSPKIG00000001440)	LONRF3 (ENSPKIG00000001403)	commd5 (ENSPKIG00000001371)	ENSPKIG00000001344	ENSPKIG00000001320	ENSPKIG00000001294	taf7 (ENSPKIG00000001246)	ENSPKIG00000001206	drp2 (ENSPKIG00000001133)	ENSPKIG00000001098	CENPI (ENSPKIG00000001063)	tmem35 (ENSPKIG00000001049)
Asian bonytongue	MODERN SPECIES	4	RAB41 (ENSSFOG00015004941)	ARR3 (ENSSFOG00015004685)	inppl1b (ENSSFOG00015004558)	P2RY4 (ENSSFOG00015004543)	MARS2 (ENSSFOG00015004532)	ENSSFOG00015004448	ENOX2 (ENSSFOG00015004364)	ENSSFOG00015027378	ENOX2 (ENSSFOG00015025686)	selenot2 (ENSSFOG00015004290)	rab33a (ENSSFOG00015031821)	ENSSFOG00015004088	SLITRK4 (ENSSFOG00015029884)	SLITRK4 (ENSSFOG00015004067)	SLITRK2 (ENSSFOG00015004061)	fmr1 (ENSSFOG00015004051) ##22	AFF2 (ENSSFOG00015004020)	ids (ENSSFOG00015003962)	lygl2 (ENSSFOG00015003838)	zgc:66433 (ENSSFOG00015003809)	LONRF3 (ENSSFOG00015003783)	commd5 (ENSSFOG00015003765)	ENSSFOG00015003722	il1rapl2 (ENSSFOG00015003661)	ENSSFOG00015003576	ENSSFOG00015003533	hdac3 (ENSSFOG00015003477)	ENSSFOG00015003471	FCHSD1 (ENSSFOG00015003395)	emx3 (ENSSFOG00015003367)	b4galt7 (ENSSFOG00015003328)
Spotted gar	MODERN SPECIES	673	DIAPH2 (ENSLOCG00000015338)	pcdh19 (ENSLOCG00000015346)	tnmd (ENSLOCG00000015348)	elf1 (ENSLOCG00000015349)	aifm1 (ENSLOCG00000015353)	MARS2 (ENSLOCG00000015357)	rab33a (ENSLOCG00000015358)	selenot2 (ENSLOCG00000015360)	ENOX2 (ENSLOCG00000015363)	ENSLOCG00000015366	ENSLOCG00000015381	med12 (ENSLOCG00000015382)	ENSLOCG00000015394	SLITRK4 (ENSLOCG00000017498)	SLITRK2 (ENSLOCG00000017499)	fmr1 (ENSLOCG00000015397) ##22	AFF2 (ENSLOCG00000015403)	ids (ENSLOCG00000015405)	ENSLOCG00000017500	WDR44 (ENSLOCG00000015409)	klhl13 (ENSLOCG00000015414)
Reedfish	MODERN SPECIES	3	zgc:162171 (ENSECRG00000011941)	ENSECRG00000011930	ENSECRG00000011917	ENSECRG00000011898	med12 (ENSECRG00000011825)	ENSECRG00000011696	ENSECRG00000011645	ENSECRG00000011635	SLITRK4 (ENSECRG00000011626)	ENSECRG00000011617	ENSECRG00000011605	ENSECRG00000011596	SLITRK2 (ENSECRG00000011585)	slc6a14 (ENSECRG00000011571)	ENSECRG00000011549	fmr1 (ENSECRG00000011516) ##22	ENSECRG00000011497	AFF2 (ENSECRG00000011455)	ids (ENSECRG00000011409)	lygl2 (ENSECRG00000011386)	zgc:66433 (ENSECRG00000011338)	ENSECRG00000011023	commd5 (ENSECRG00000011009)	fam199x (ENSECRG00000010996)	ENSECRG00000010985	il1rapl2 (ENSECRG00000010980)	IL1RAPL2 (ENSECRG00000010974)	ENSECRG00000010959	ENSECRG00000010947	ENSECRG00000010941	RADX (ENSECRG00000010930)
Elephant shark	MODERN SPECIES	1487	ARHGEF6 (ENSCMIG00000010915)	RBMXL1 (ENSCMIG00000011173)	ENSCMIG00000011301	GPR101 (ENSCMIG00000011654)	ENSCMIG00000011658	zic3 (ENSCMIG00000011664)	ENSCMIG00000011669	ENSCMIG00000011692	ENSCMIG00000011773	ENSCMIG00000011775	MCF2 (ENSCMIG00000011812)	ATP11C (ENSCMIG00000012128)	sox3 (ENSCMIG00000012478)	SLITRK4 (ENSCMIG00000012480)	SLITRK2 (ENSCMIG00000012484)	fmr1 (ENSCMIG00000012597) ##22	AFF2 (ENSCMIG00000012952)	ids (ENSCMIG00000012959)	ENSCMIG00000012966	ENSCMIG00000012969	fam199x (ENSCMIG00000012975)	ENSCMIG00000012985	ENSCMIG00000012988	commd5 (ENSCMIG00000012990)	ENSCMIG00000012993	il1rapl2 (ENSCMIG00000012995)	ENSCMIG00000013035	ENSCMIG00000013208	rnf128a (ENSCMIG00000013217)	tbc1d8b (ENSCMIG00000013242)	npas2 (ENSCMIG00000013281)