Euarchontoglires	ANCESTRAL SPECIES	2	ENSGT00940000155531.b	ENSGT00910000147422	ENSGT00950000183039.B.a #7	ENSGT00940000156335 #8	ENSGT00390000013727.d #9	ENSGT01000000214413.b.a.a #10	ENSGT00940000156305 #11	ENSGT00390000002837 #12	ENSGT00960000190585 #13	ENSGT00390000009980 #14	ENSGT00940000157401 #15	ENSGT00910000147128	ENSGT00940000155931 #16	ENSGT00390000013701 #18	ENSGT00390000015010 #20	ENSGT00950000183189.a.b.a #22	ENSGT00940000154384.h.a ##23	ENSGT00940000160614 #25	ENSGT00940000156162.C.k #27	ENSGT00940000154552.b #28	ENSGT00940000156941 #29	ENSGT00950000182899.C.a #30	ENSGT00940000161734 #32	ENSGT00940000159676 #31	ENSGT00990000203899	ENSGT00940000154345.b	ENSGT00940000154345.a	ENSGT00940000156789	ENSGT00530000063947.B	ENSGT00390000013063	ENSGT00940000163497
Euarchontoglires_A	ANCESTRAL SPECIES	2	ENSGT00940000155531.b	ENSGT00910000147422	ENSGT00950000183039.B.a #7	ENSGT00940000156335 #8	ENSGT00390000013727.d #9	ENSGT01000000214413.b.a.a #10	ENSGT00940000156305 #11	ENSGT00390000002837 #12	ENSGT00960000190585 #13	ENSGT00390000009980 #14	ENSGT00940000157401 #15	ENSGT00910000147128	ENSGT00940000155931 #16	ENSGT00390000013701 #18	ENSGT00390000015010 #20	ENSGT00950000183189.a.b.a #22	ENSGT00940000154384.h.a ##23	ENSGT00940000154384.h.b.f ##23	ENSGT00940000160614 #25	ENSGT00940000156162.C.k #27	ENSGT00940000154552.b #28	ENSGT00940000156941 #29	ENSGT00950000182899.C.a #30	ENSGT00940000159676 #31	ENSGT00940000161734 #32	ENSGT00940000163715.a	ENSGT00990000203899	ENSGT00940000154345.b	ENSGT00940000154345.a	ENSGT00940000156789	ENSGT00530000063947.B
Glires	ANCESTRAL SPECIES	2	ENSGT00940000155531.b	ENSGT00910000147422	ENSGT00950000183039.B.a #7	ENSGT00940000156335 #8	ENSGT00390000013727.d #9	ENSGT01000000214413.b.a.a #10	ENSGT00940000156305 #11	ENSGT00390000002837 #12	ENSGT00960000190585 #13	ENSGT00390000009980 #14	ENSGT00940000157401 #15	ENSGT00910000147128	ENSGT00940000155931 #16	ENSGT00390000013701 #18	ENSGT00390000015010 #20	ENSGT00950000183189.a.b.a #22	ENSGT00940000154384.h.a ##23	ENSGT00940000154384.h.b.f ##23	ENSGT00940000160614 #25	ENSGT00940000156162.C.k #27	ENSGT00940000154552.b #28	ENSGT00940000156941 #29	ENSGT00950000182899.C.a #30	ENSGT00940000159676 #31	ENSGT00940000161734 #32	ENSGT00940000163715.a	ENSGT00990000203899	ENSGT00940000154345.b	ENSGT00940000154345.a	ENSGT00940000156789	ENSGT00530000063947.B
Rodentia	ANCESTRAL SPECIES	2	ENSGT00730000111202	ENSGT00940000155531.b	ENSGT00910000147422	ENSGT00950000183039.B.a #7	ENSGT00940000156335 #8	ENSGT00390000013727.d #9	ENSGT01000000214413.b.a.a #10	ENSGT00940000156305 #11	ENSGT00390000002837 #12	ENSGT00960000190585 #13	ENSGT00390000009980 #14	ENSGT00940000157401 #15	ENSGT00940000155931 #16	ENSGT00390000013701 #18	ENSGT00390000015010 #20	ENSGT00950000183189.a.b.a #22	ENSGT00940000154384.h.a ##23	ENSGT00940000154384.h.b.f ##23	ENSGT00940000160614 #25	ENSGT00940000156162.C.k #27	ENSGT00940000154552.b #28	ENSGT00940000156941 #29	ENSGT00950000182899.C.a #30	ENSGT00940000159676 #31	ENSGT00940000161734 #32	ENSGT00990000203899	ENSGT00940000154345.b	ENSGT00940000154345.a	ENSGT00940000156789	ENSGT00530000063947.B	ENSGT00390000013063
Rodentia_A	ANCESTRAL SPECIES	5	ENSGT00730000111202	ENSGT00940000155531.b	ENSGT00910000147422	ENSGT00950000183039.B.a #7	ENSGT00940000156335 #8	ENSGT00390000013727.d #9	ENSGT01000000214413.b.a.a #10	ENSGT00940000156305 #11	ENSGT00390000002837 #12	ENSGT00960000190585 #13	ENSGT00390000009980 #14	ENSGT00940000157401 #15	ENSGT00940000155931 #16	ENSGT00390000013701 #18	ENSGT00390000015010 #20	ENSGT00950000183189.a.b.a #22	ENSGT00940000154384.h.b.f ##23	ENSGT00940000154384.h.a ##23	ENSGT00940000160614 #25	ENSGT00940000156162.C.k #27	ENSGT00940000154552.b #28	ENSGT00940000156941 #29	ENSGT00950000182899.C.a #30	ENSGT00940000161734 #32	ENSGT00940000159676 #31	ENSGT00990000203899	ENSGT00940000154345.b	ENSGT00940000154345.a	ENSGT00940000156789	ENSGT00530000063947.B	ENSGT00390000013063
Sciuridae	ANCESTRAL SPECIES	12	ENSGT00730000111202	ENSGT00940000155531.b	ENSGT00910000147422	ENSGT00950000183039.B.a #7	ENSGT00940000156335 #8	ENSGT00390000013727.d #9	ENSGT01000000214413.b.a.a #10	ENSGT00940000156305 #11	ENSGT00390000002837 #12	ENSGT00960000190585 #13	ENSGT00390000009980.k #14	ENSGT00940000157401 #15	ENSGT00940000155931 #16	ENSGT00390000013701 #18	ENSGT00390000015010 #20	ENSGT00950000183189.a.b.a #22	ENSGT00940000154384.g #23	ENSGT00940000154384.h.b.f ##23	ENSGT00940000160614 #25	ENSGT00940000156162.C.k #27	ENSGT00940000154552.b #28	ENSGT00940000156941 #29	ENSGT00950000182899.C.a #30	ENSGT00940000159676 #31	ENSGT00990000203899	ENSGT00940000161734 #32	ENSGT00940000154345.b	ENSGT00940000154345.a	ENSGT00940000156789	ENSGT00530000063947.B	ENSGT00390000013063
Marmotini	ANCESTRAL SPECIES	59	ENSGT00730000111202	ENSGT00940000155531.b	ENSGT00910000147422	ENSGT00950000183039.B.a #7	ENSGT00940000156335 #8	ENSGT00390000013727.d #9	ENSGT01000000214413.b.a.a #10	ENSGT00940000156305 #11	ENSGT00390000002837 #12	ENSGT00960000190585 #13	ENSGT00390000009980.k #14	ENSGT00940000157401 #15	ENSGT00940000155931 #16	ENSGT00390000013701 #18	ENSGT00390000015010 #20	ENSGT00950000183189.a.b.a #22	ENSGT00940000154384.g #23	ENSGT00940000154384.h.b.f ##23	ENSGT00940000160614 #25	ENSGT00940000156162.C.k #27	ENSGT00940000154552.b #28	ENSGT00940000156941 #29	ENSGT00950000182899.C.a #30	ENSGT00940000159676 #31	ENSGT00990000203899	ENSGT00940000161734 #32
Alpin marmot	MODERN SPECIES	37	KCNMB3 (ENSMMMG00000004362) #7	ENSMMMG00000004333 #8	MFN1 (ENSMMMG00000004267) #9	GNB4 (ENSMMMG00000004203) #10	ACTL6A (ENSMMMG00000004175) #11	MRPL47 (ENSMMMG00000004133) #12	ENSMMMG00000004120 #13	NDUFB5 (ENSMMMG00000004098) #14	USP13 (ENSMMMG00000004025) #15	PEX5L (ENSMMMG00000003637) #16	ENSMMMG00000003599 #17	ENSMMMG00000003524 #18	ENSMMMG00000003512 #19	CCDC39 (ENSMMMG00000003487) #20	ENSMMMG00000003471 #21	FXR1 (ENSMMMG00000003158) #22	ENSMMMG00000003137 #23	ENSMMMG00000003124 #24	SOX2 (ENSMMMG00000003111) #25	ENSMMMG00000003075 #26	ATP11B (ENSMMMG00000003020) #27	DCUN1D1 (ENSMMMG00000003003) #28	MCCC1 (ENSMMMG00000002969) #29	ENSMMMG00000002953 #30	B3GNT5 (ENSMMMG00000002941) #31	MCF2L2 (ENSMMMG00000002829) #32	ENSMMMG00000002795 #33	ENSMMMG00000002779 #34
Marmotini_b	ANCESTRAL SPECIES	149	ENSGT00730000111202	ENSGT00940000155531.b	ENSGT00910000147422	ENSGT00950000183039.B.a #7	ENSGT00940000156335 #8	ENSGT00390000013727.d #9	ENSGT01000000214413.b.a.a #10	ENSGT00390000015224.c.b.b.a.a	ENSGT00940000156305 #11	ENSGT00390000002837 #12	ENSGT00390000009980.k #14	ENSGT00940000157401 #15	ENSGT00940000155931 #16	ENSGT00390000013701 #18	ENSGT00390000015010 #20	ENSGT00950000183189.a.b.a #22	ENSGT00940000154384.g #23	ENSGT00940000154384.h.b.f ##23	ENSGT00940000160614 #25	ENSGT00940000156162.C.k #27	ENSGT00940000154552.b #28	ENSGT00940000156941 #29	ENSGT00950000182899.C.a #30	ENSGT00940000159676 #31	ENSGT00990000203899	ENSGT00940000161734 #32
Arctic ground squirrel	MODERN SPECIES	22	ENSUPAG00010022722	KCNMB3 (ENSUPAG00010022719) #7	ENSUPAG00010022718	ZNF639 (ENSUPAG00010022715) #8	MFN1 (ENSUPAG00010022711) #9	GNB4 (ENSUPAG00010022702) #10	ENSUPAG00010022699	ACTL6A (ENSUPAG00010022696) #11	MRPL47 (ENSUPAG00010022693) #12	NDUFB5 (ENSUPAG00010022690) #14	USP13 (ENSUPAG00010022684) #15	PEX5L (ENSUPAG00010022611) #16	TTC14 (ENSUPAG00010022594) #18	CCDC39 (ENSUPAG00010022590) #20	ENSUPAG00010022589	FXR1 (ENSUPAG00010022534) #22	ENSUPAG00010022530 #23	ATP11B (ENSUPAG00010022507) #27	DCUN1D1 (ENSUPAG00010022504) #28	MCCC1 (ENSUPAG00010022499) #29	ENSUPAG00010022496 #30	ENSUPAG00010022491	ENSUPAG00010022487	MCF2L2 (ENSUPAG00010022478) #32	ENSUPAG00010022475
Squirrel	MODERN SPECIES	166	ZMAT3 (ENSSTOG00000028436)	PIK3CA (ENSSTOG00000012906)	KCNMB3 (ENSSTOG00000013715) #7	ZNF639 (ENSSTOG00000001442) #8	MFN1 (ENSSTOG00000005167) #9	GNB4 (ENSSTOG00000005210) #10	ENSSTOG00000033903	ACTL6A (ENSSTOG00000010540) #11	MRPL47 (ENSSTOG00000032487) #12	NDUFB5 (ENSSTOG00000010557) #14	USP13 (ENSSTOG00000002367) #15	PEX5L (ENSSTOG00000002383) #16	TTC14 (ENSSTOG00000003827) #18	ENSSTOG00000003847 #20	ENSSTOG00000011392 ##26	FXR1 (ENSSTOG00000010612) #22	ENSSTOG00000011508 ##23	SOX2 (ENSSTOG00000011011) #25	ATP11B (ENSSTOG00000016462) #27	DCUN1D1 (ENSSTOG00000016465) #28	MCCC1 (ENSSTOG00000010361) #29	ENSSTOG00000010372 #30	B3GNT5 (ENSSTOG00000010399) #31	ENSSTOG00000029916	MCF2L2 (ENSSTOG00000010382) #32
Eurasian red squirrel	MODERN SPECIES	1	KCNMB3 (ENSSVLG00005007870) #7	ENSSVLG00005007822	ENSSVLG00005007788 #8	MFN1 (ENSSVLG00005007726) #9	GNB4 (ENSSVLG00005007689) #10	ENSSVLG00005007595 #11	MRPL47 (ENSSVLG00005007505) #12	ENSSVLG00005007458 #14	USP13 (ENSSVLG00005007303) #15	ENSSVLG00005007236	PEX5L (ENSSVLG00005006552) #16	ENSSVLG00005006293	TTC14 (ENSSVLG00005006262) #18	CCDC39 (ENSSVLG00005006018) #20	ENSSVLG00005005952	FXR1 (ENSSVLG00005005627) #22	ENSSVLG00005005504 ##23	SOX2 (ENSSVLG00005005486) #25	ENSSVLG00005005467	ATP11B (ENSSVLG00005005419) #27	DCUN1D1 (ENSSVLG00005005371) #28	MCCC1 (ENSSVLG00005005194) #29	ENSSVLG00005005088	ENSSVLG00005005061	B3GNT5 (ENSSVLG00005005047) #31	MCF2L2 (ENSSVLG00005005015) #32	KLHL6 (ENSSVLG00005004948)	KLHL24 (ENSSVLG00005004913)	YEATS2 (ENSSVLG00005004883)	MAP6D1 (ENSSVLG00005004847)	PARL (ENSSVLG00005004781)
Hystricomorpha	ANCESTRAL SPECIES	6	ENSGT00940000153421.a.b	ENSGT00950000183039.B.b.a ##7	ENSGT00730000111202	ENSGT00940000155531.b	ENSGT00950000183039.B.a #7	ENSGT00940000156335 #8	ENSGT00390000013727.d #9	ENSGT01000000214413.b.a.a #10	ENSGT00940000156305 #11	ENSGT00390000002837 #12	ENSGT00390000009980 #14	ENSGT00940000157401 #15	ENSGT00940000155931 #16	ENSGT00390000013701 #18	ENSGT00390000015010 #20	ENSGT00950000183189.a.b.a #22	ENSGT00940000154384.h.a ##23	ENSGT00940000160614 #25	ENSGT00940000156162.C.k #27	ENSGT00940000154552.a.a.a ##28	ENSGT00940000156941 #29	ENSGT00390000008796	ENSGT00390000016972.b.j.a.a	ENSGT00730000111263	ENSGT00940000158330	ENSGT00390000012807	ENSGT00940000160658	ENSGT00730000111453	ENSGT00730000110943.C	ENSGT00940000160853	ENSGT01030000234598.a.a.a
Naked mole-rat female	MODERN SPECIES	27	ENSHGLG00000011894	KCNMB3 (ENSHGLG00000012132) #7	ZNF639 (ENSHGLG00000050776) #8	MFN1 (ENSHGLG00000012515) #9	ENSHGLG00000044219	GNB4 (ENSHGLG00000012880) #10	ACTL6A (ENSHGLG00000013350) #11	MRPL47 (ENSHGLG00000033799) #12	NDUFB5 (ENSHGLG00000014377) #14	USP13 (ENSHGLG00000014472) #15	PEX5L (ENSHGLG00000016946) #16	ENSHGLG00000016952	TTC14 (ENSHGLG00000016959) #18	CCDC39 (ENSHGLG00000016969) #20	ENSHGLG00000039606	FXR1 (ENSHGLG00000018814) #22	ENSHGLG00000014387 ##23	ENSHGLG00000050891	ENSHGLG00000032116	SOX2 (ENSHGLG00000046210) #25	ATP11B (ENSHGLG00000014553) #27	ENSHGLG00000014589 ##28	ENSHGLG00000041896	ENSHGLG00000014650 #29	ENSHGLG00000014676	RPL35A (ENSHGLG00000046416)	IQCG (ENSHGLG00000018834)	LRCH3 (ENSHGLG00000019171)	ENSHGLG00000035747	ENSHGLG00000019355	ENSHGLG00000017149
Hystricomorpha_a	ANCESTRAL SPECIES	4	ENSGT00940000153421.a.b	ENSGT00950000183039.B.b.a ##7	ENSGT00730000111202	ENSGT00940000155531.b	ENSGT00950000183039.B.a #7	ENSGT00940000156335 #8	ENSGT00390000013727.d #9	ENSGT01000000214413.b.a.a #10	ENSGT00940000156305 #11	ENSGT00390000002837 #12	ENSGT00390000009980 #14	ENSGT00940000157401 #15	ENSGT00940000155931 #16	ENSGT00390000013701 #18	ENSGT00390000015010 #20	ENSGT00950000183189.a.b.a #22	ENSGT00940000154384.h.b.f ##23	ENSGT00940000154384.h.a ##23	ENSGT00940000160614 #25	ENSGT00940000156162.C.k #27	ENSGT00940000154552.a.a.a ##28	ENSGT00940000156941 #29	ENSGT00390000008796	ENSGT00390000016972.b.j.a.a	ENSGT00730000111263	ENSGT00940000158330	ENSGT00390000012807	ENSGT00940000160658	ENSGT00940000160853	ENSGT01030000234598.a.a.a	ENSGT00940000161784 #34
Guinea pig	MODERN SPECIES	47	TBL1XR1 (ENSCPOG00000005472)	KCNMB2 (ENSCPOG00000013955) ##7	ZMAT3 (ENSCPOG00000003865)	PIK3CA (ENSCPOG00000006574)	KCNMB3 (ENSCPOG00000025991) #7	ZNF639 (ENSCPOG00000039664) #8	MFN1 (ENSCPOG00000033188) #9	GNB4 (ENSCPOG00000034790) #10	ACTL6A (ENSCPOG00000025370) #11	ENSCPOG00000002312 #12	NDUFB5 (ENSCPOG00000036110) #14	USP13 (ENSCPOG00000002315) #15	PEX5L (ENSCPOG00000002319) #16	TTC14 (ENSCPOG00000015311) #18	CCDC39 (ENSCPOG00000015314) #20	FXR1 (ENSCPOG00000010418) #22	ENSCPOG00000021198 ##23	SPTLC1 (ENSCPOG00000015106)	ROR2 (ENSCPOG00000021707)	AUH (ENSCPOG00000001066)	SYK (ENSCPOG00000010410)
Hystricomorpha_b	ANCESTRAL SPECIES	9	ENSGT00940000153421.a.b	ENSGT00950000183039.B.b.a ##7	ENSGT00730000111202	ENSGT00940000155531.b	ENSGT00950000183039.B.a #7	ENSGT00940000156335 #8	ENSGT00390000013727.d #9	ENSGT01000000214413.b.a.a #10	ENSGT00940000156305 #11	ENSGT00390000002837 #12	ENSGT00390000009980 #14	ENSGT00940000157401 #15	ENSGT00940000155931 #16	ENSGT00390000013701 #18	ENSGT00390000015010 #20	ENSGT00950000183189.a.b.a #22	ENSGT00940000154384.h.a ##23	ENSGT00940000160614 #25	ENSGT00940000156162.C.k #27	ENSGT00940000170892	ENSGT00940000156941 #29	ENSGT00390000008796	ENSGT00390000016972.b.j.a.a	ENSGT00730000111263	ENSGT00940000158330	ENSGT00390000012807	ENSGT00940000160658	ENSGT00940000160853	ENSGT01030000234598.a.a.a	ENSGT00940000161784 #34	ENSGT00940000160780
Long-tailed chinchilla	MODERN SPECIES	127	TBL1XR1 (ENSCLAG00000013893)	KCNMB2 (ENSCLAG00000014319) ##7	ZMAT3 (ENSCLAG00000013464)	PIK3CA (ENSCLAG00000015135)	KCNMB3 (ENSCLAG00000014741) #7	ZNF639 (ENSCLAG00000011168) #8	MFN1 (ENSCLAG00000015912) #9	GNB4 (ENSCLAG00000015522) #10	ACTL6A (ENSCLAG00000012251) #11	ENSCLAG00000015039 #12	ENSCLAG00000014903 #14	USP13 (ENSCLAG00000015308) #15	PEX5L (ENSCLAG00000014042) #16	TTC14 (ENSCLAG00000013302) #18	CCDC39 (ENSCLAG00000012683) #20	FXR1 (ENSCLAG00000014182) #22	DNAJC19 (ENSCLAG00000011246) ##23	SOX2 (ENSCLAG00000017978) #25	ATP11B (ENSCLAG00000012551) #27	ENSCLAG00000014207	MCCC1 (ENSCLAG00000014174) #29	LMLN (ENSCLAG00000011520)	ENSCLAG00000012348	IQCG (ENSCLAG00000013851)	LRCH3 (ENSCLAG00000015543)	ENSCLAG00000012210	RUBCN (ENSCLAG00000013495)	TNK2 (ENSCLAG00000012555)	TFRC (ENSCLAG00000014371)	ZDHHC19 (ENSCLAG00000010728) #34	SLC51A (ENSCLAG00000011171)
Degu	DUPLICATION
Degu	DUPLICATION
Degu	MODERN SPECIES	339				MFN1 (ENSODEG00000002887) #9	GNB4 (ENSODEG00000002845) #10	ENSODEG00000002804 #11	ENSODEG00000002762 #12	NDUFB5 (ENSODEG00000002740) #14	ENSODEG00000002050	ENSODEG00000018753	USP13 (ENSODEG00000001943) #15	PEX5L (ENSODEG00000001608) #16	ENSODEG00000001450 #18	CCDC39 (ENSODEG00000001427) #20	ENSODEG00000001368	ENSODEG00000001069 #22	ENSODEG00000000914 ##23
Degu	MODERN SPECIES	235						PCMTD2 (ENSODEG00000004359)	ENSODEG00000004395	MYT1 (ENSODEG00000004469)	OPRL1 (ENSODEG00000004636)	LKAAEAR1 (ENSODEG00000004644)	RGS19 (ENSODEG00000004661)	TCEA2 (ENSODEG00000004734)	SOX18 (ENSODEG00000004785)	C20orf204 (ENSODEG00000004800)	PRPF6 (ENSODEG00000004841)	ENSODEG00000006177 #22	SAMD10 (ENSODEG00000006200)	ZNF512B (ENSODEG00000006241)	UCKL1 (ENSODEG00000006332)	DNAJC5 (ENSODEG00000006383)	ENSODEG00000006430	ABHD16B (ENSODEG00000019323)	ZBTB46 (ENSODEG00000006493)	SLC2A4RG (ENSODEG00000006508)	LIME1 (ENSODEG00000006535)	ZGPAT (ENSODEG00000006562)	ENSODEG00000006608	ARFRP1 (ENSODEG00000006629)	RTEL1 (ENSODEG00000006769)	STMN3 (ENSODEG00000007140)	ENSODEG00000007154
Degu	MODERN SPECIES	200		ENSODEG00000001487	ENSODEG00000001474	ZDHHC13 (ENSODEG00000001434)	CSRP3 (ENSODEG00000001395)	E2F8 (ENSODEG00000001309)	ENSODEG00000001265	NAV2 (ENSODEG00000001086)	DBX1 (ENSODEG00000000930)	HTATIP2 (ENSODEG00000000910)	ENSODEG00000000894	PRMT3 (ENSODEG00000000824)	SLC6A5 (ENSODEG00000000719)	ENSODEG00000018648	NELL1 (ENSODEG00000000600)	ENSODEG00000000998 #22	ANO5 (ENSODEG00000000906)	SLC17A6 (ENSODEG00000000829)	FANCF (ENSODEG00000000786)	ENSODEG00000000779	ENSODEG00000000771	SVIP (ENSODEG00000000706)	CCDC179 (ENSODEG00000000686)	ENSODEG00000000674
Rodentia_B	ANCESTRAL SPECIES	2	ENSGT00940000153421.a.b	ENSGT00950000183039.B.b.a ##7	ENSGT00730000111202	ENSGT00940000155531.b	ENSGT00950000183039.B.a #7	ENSGT00940000156335 #8	ENSGT00390000013727.d #9	ENSGT01000000214413.b.a.a #10	ENSGT00940000156305 #11	ENSGT00390000002837 #12	ENSGT00390000009980 #14	ENSGT00940000157401 #15	ENSGT00940000155931 #16	ENSGT00390000013701 #18	ENSGT00390000015010 #20	ENSGT00950000183189.a.b.a #22	ENSGT00940000154384.h.a ##23	ENSGT00940000154384.h.b.f ##23	ENSGT00940000160614 #25	ENSGT00940000156162.C.k #27	ENSGT00940000154552.b #28	ENSGT00940000156941 #29	ENSGT00940000164015	ENSGT00950000182899.C.a #30	ENSGT00940000159676 #31	ENSGT00990000203899	ENSGT00940000154345.b	ENSGT00940000154345.a	ENSGT00940000156789	ENSGT00530000063947.B	ENSGT00390000013063
Myomorpha	ANCESTRAL SPECIES	38	ENSGT00940000153421.a.b	ENSGT00950000183039.B.b.a ##7	ENSGT00730000111202	ENSGT00940000155531.b	ENSGT00950000183039.B.a #7	ENSGT00940000156335 #8	ENSGT00390000013727.d #9	ENSGT01000000214413.b.a.a #10	ENSGT00940000156305 #11	ENSGT00390000002837 #12	ENSGT00390000009980 #14	ENSGT00940000157401 #15	ENSGT00940000155931 #16	ENSGT00390000013701 #18	ENSGT00390000015010 #20	ENSGT00950000183189.a.b.a #22	ENSGT00940000154384.h.a ##23	ENSGT00940000154384.h.b.f ##23	ENSGT00940000160614 #25	ENSGT00940000156162.C.k #27	ENSGT00940000154552.b #28	ENSGT00940000156941 #29	ENSGT00940000153661.b.b
Muroidea	ANCESTRAL SPECIES	83		ENSGT00950000183039.B.b.a ##7	ENSGT00730000111202	ENSGT00940000155531.b	ENSGT00950000183039.B.a #7	ENSGT00940000156335 #8	ENSGT00390000013727.d #9	ENSGT01000000214413.b.a.a #10	ENSGT00940000156305 #11	ENSGT00390000002837 #12	ENSGT00390000009980 #14	ENSGT00940000157401 #15	ENSGT00940000155931 #16	ENSGT00390000013701 #18	ENSGT00390000015010 #20	ENSGT00950000183189.a.b.a #22	ENSGT00940000154384.h.b.f ##23	ENSGT00940000160614 #25	ENSGT00940000156162.C.k #27	ENSGT00940000154552.b #28	ENSGT00940000156941 #29	ENSGT00940000153661.b.b
Muroidea_A	ANCESTRAL SPECIES	5	ENSGT00940000164694	ENSGT00950000183039.B.b.a ##7	ENSGT00730000111202	ENSGT00940000155531.b	ENSGT00950000183039.B.a #7	ENSGT00940000156335 #8	ENSGT00390000013727.d #9	ENSGT01000000214413.b.a.a #10	ENSGT00940000156305 #11	ENSGT00390000002837 #12	ENSGT00390000009980 #14	ENSGT00940000157401 #15	ENSGT00940000155931 #16	ENSGT00390000013701 #18	ENSGT00390000015010 #20	ENSGT00950000183189.a.b.a #22	ENSGT00940000154384.h.b.f ##23	ENSGT00940000160614 #25	ENSGT00940000156162.C.k #27	ENSGT00940000154552.b #28	ENSGT00940000156941 #29	ENSGT00940000153661.b.b	ENSGT00940000153661.a.a	ENSGT00940000157312	ENSGT00950000183169.C	ENSGT00940000155988	ENSGT01010000222815	ENSGT00950000183130.A	ENSGT00940000155372	ENSGT00390000012346	ENSGT01060000248588.a.c.b
Murinae	ANCESTRAL SPECIES	5	ENSGT00940000164694	ENSGT00950000183039.B.b.a ##7	ENSGT00730000111202	ENSGT00940000155531.b	ENSGT00950000183039.B.a #7	ENSGT00940000156335 #8	ENSGT00390000013727.d #9	ENSGT01000000214413.b.a.a #10	ENSGT00940000156305 #11	ENSGT00390000002837 #12	ENSGT00390000009980 #14	ENSGT00940000157401 #15	ENSGT00940000155931 #16	ENSGT00390000013701 #18	ENSGT00390000015010 #20	ENSGT00950000183189.a.b.a #22	ENSGT00940000154384.h.b.f ##23	ENSGT00940000160614 #25	ENSGT00940000156162.C.k #27	ENSGT00940000154552.b #28	ENSGT00940000156941 #29	ENSGT00940000153661.a.a	ENSGT00940000157312	ENSGT00950000183169.C	ENSGT00940000155988	ENSGT01010000222815	ENSGT00950000183130.A	ENSGT00940000155372	ENSGT00390000012346	ENSGT01060000248588.a.c.b	ENSGT00640000091487
Mus	ANCESTRAL SPECIES	7	ENSGT00940000155893.b	ENSGT00950000183039.B.b.a ##7	ENSGT00730000111202	ENSGT00940000155531.b	ENSGT00950000183039.B.a #7	ENSGT00940000156335 #8	ENSGT00390000013727.d #9	ENSGT01000000214413.b.a.a #10	ENSGT00940000156305 #11	ENSGT00390000002837 #12	ENSGT00390000009980 #14	ENSGT00940000157401 #15	ENSGT00940000155931 #16	ENSGT00390000013701 #18	ENSGT00390000015010 #20	ENSGT00950000183189.a.b.a #22	ENSGT00940000154384.h.b.f ##23	ENSGT00940000160614 #25	ENSGT00940000156162.C.k #27	ENSGT00940000154552.b #28	ENSGT00940000156941 #29	ENSGT00940000153661.a.a	ENSGT00940000157312	ENSGT00950000183169.C	ENSGT00940000155988	ENSGT00860000136163	ENSGT01010000222815	ENSGT00950000183130.A	ENSGT00940000155372	ENSGT00390000012346	ENSGT01060000248588.a.c.b
Mus_A	ANCESTRAL SPECIES	9	ENSGT00940000155893.b	ENSGT00950000183039.B.b.a ##7	ENSGT00730000111202	ENSGT00940000155531.b	ENSGT00950000183039.B.a #7	ENSGT00940000156335 #8	ENSGT00390000013727.d #9	ENSGT01000000214413.b.a.a #10	ENSGT00940000156305 #11	ENSGT00390000002837.y #12	ENSGT00390000009980 #14	ENSGT00940000157401 #15	ENSGT00940000155931 #16	ENSGT00390000013701 #18	ENSGT00390000015010 #20	ENSGT00950000183189.a.b.a #22	ENSGT00940000154384.h.b.f ##23	ENSGT00940000160614 #25	ENSGT00940000156162.C.k #27	ENSGT00940000154552.b #28	ENSGT00940000156941 #29	ENSGT00940000153661.b.b	ENSGT00940000153661.a.a	ENSGT00940000157312	ENSGT00950000183169.C	ENSGT00940000155988	ENSGT00860000136163	ENSGT01010000222815	ENSGT00950000183130.A	ENSGT00940000155372	ENSGT00390000012346
Mus_B	ANCESTRAL SPECIES	8	ENSGT00940000155893.b	ENSGT00950000183039.B.b.a ##7	ENSGT00730000111202	ENSGT00940000155531.b	ENSGT00950000183039.B.a #7	ENSGT00940000156335 #8	ENSGT00390000013727.d #9	ENSGT01000000214413.b.a.a #10	ENSGT00940000156305 #11	ENSGT00390000002837.y #12	ENSGT00390000009980 #14	ENSGT00940000157401 #15	ENSGT00940000155931 #16	ENSGT00390000013701 #18	ENSGT00390000015010 #20	ENSGT00950000183189.a.b.a #22	ENSGT00940000154384.h.b.f ##23	ENSGT00940000160614 #25	ENSGT00940000156162.C.k #27	ENSGT00940000154552.b #28	ENSGT00940000156941 #29	ENSGT00940000153661.a.a	ENSGT00940000157312	ENSGT00950000183169.C	ENSGT00940000155988	ENSGT00860000136163	ENSGT01010000222815	ENSGT00950000183130.A	ENSGT00940000155372	ENSGT00390000012346	ENSGT01060000248588.a.c.b
Mus_C	ANCESTRAL SPECIES	6	ENSGT00940000155893.b	ENSGT00950000183039.B.b.a ##7	ENSGT00730000111202	ENSGT00940000155531.b	ENSGT00950000183039.B.a #7	ENSGT00940000156335 #8	ENSGT00390000013727.d #9	ENSGT01000000214413.b.a.a #10	ENSGT00940000156305 #11	ENSGT00390000002837.y #12	ENSGT00390000009980 #14	ENSGT00940000157401 #15	ENSGT00940000155931 #16	ENSGT00390000013701 #18	ENSGT00390000015010 #20	ENSGT00950000183189.a.b.a #22	ENSGT00940000154384.h.b.f ##23	ENSGT00940000160614 #25	ENSGT00940000156162.C.k #27	ENSGT00940000154552.b #28	ENSGT00940000156941 #29	ENSGT00940000153661.a.a	ENSGT00940000157312	ENSGT00950000183169.C	ENSGT00940000155988	ENSGT00860000136163	ENSGT01010000222815	ENSGT00950000183130.A	ENSGT00940000155372	ENSGT00390000012346	ENSGT01060000248588.a.c.b
Steppe mouse	MODERN SPECIES	3029														Ttc14 (ENSMSIG00000010721) #18	Ccdc39 (ENSMSIG00000011242) #20	Fxr1 (ENSMSIG00000011312) #22	Dnajc19 (ENSMSIG00000012005) ##23	ENSMSIG00000012275
spretus	MODERN SPECIES	12	Slc7a14 (MGP_SPRETEiJ_G0025846)	Kcnmb2 (MGP_SPRETEiJ_G0025847) ##7	Zmat3 (MGP_SPRETEiJ_G0025848)	Pik3ca (MGP_SPRETEiJ_G0025849)	Kcnmb3 (MGP_SPRETEiJ_G0025850) #7	Zfp639 (MGP_SPRETEiJ_G0025851) #8	Mfn1 (MGP_SPRETEiJ_G0025852) #9	Gnb4 (MGP_SPRETEiJ_G0025853) #10	Actl6a (MGP_SPRETEiJ_G0025854) #11	Mrpl47 (MGP_SPRETEiJ_G0025855) #12	Ndufb5 (MGP_SPRETEiJ_G0025856) #14	Usp13 (MGP_SPRETEiJ_G0025857) #15	Pex5l (MGP_SPRETEiJ_G0025858) #16	Ttc14 (MGP_SPRETEiJ_G0025859) #18	Ccdc39 (MGP_SPRETEiJ_G0025860) #20	Fxr1 (MGP_SPRETEiJ_G0025861) #22	Dnajc19 (MGP_SPRETEiJ_G0025862) ##23	Sox2 (MGP_SPRETEiJ_G0025863) #25	Atp11b (MGP_SPRETEiJ_G0025864) #27	MGP_SPRETEiJ_G0025865 #28	Mccc1 (MGP_SPRETEiJ_G0025866) #29	MGP_SPRETEiJ_G0025867	Acad9 (MGP_SPRETEiJ_G0025868)	Zfp267 (MGP_SPRETEiJ_G0025869)	Qrfpr (MGP_SPRETEiJ_G0025870)	Anxa5 (MGP_SPRETEiJ_G0025871)	MGP_SPRETEiJ_G0025872	Exosc9 (MGP_SPRETEiJ_G0025873)	Ccna2 (MGP_SPRETEiJ_G0025874)	Bbs7 (MGP_SPRETEiJ_G0025875)	Trpc3 (MGP_SPRETEiJ_G0025876)
Mouse	MODERN SPECIES	12	Slc7a14 (ENSMUSG00000069072)	Kcnmb2 (ENSMUSG00000037610) ##7	Zmat3 (ENSMUSG00000027663)	Pik3ca (ENSMUSG00000027665)	Kcnmb3 (ENSMUSG00000091091) #7	Zfp639 (ENSMUSG00000027667) #8	Mfn1 (ENSMUSG00000027668) #9	Gnb4 (ENSMUSG00000027669) #10	Actl6a (ENSMUSG00000027671) #11	Mrpl47 (ENSMUSG00000037531) #12	Ndufb5 (ENSMUSG00000027673) #14	Usp13 (ENSMUSG00000056900) #15	Pex5l (ENSMUSG00000027674) #16	Ttc14 (ENSMUSG00000027677) #18	Ccdc39 (ENSMUSG00000027676) #20	Fxr1 (ENSMUSG00000027680) #22	Dnajc19 (ENSMUSG00000027679) ##23	Sox2 (ENSMUSG00000074637) #25	Atp11b (ENSMUSG00000037400) #27	Dcun1d1 (ENSMUSG00000027708) #28	Mccc1 (ENSMUSG00000027709) #29	Ccdc144b (ENSMUSG00000047696)	Acad9 (ENSMUSG00000027710)	Zfp267 (ENSMUSG00000033883)	Qrfpr (ENSMUSG00000058400)	Anxa5 (ENSMUSG00000027712)	1810062G17Rik (ENSMUSG00000027713)	Smim43 (ENSMUSG00000085007)	Exosc9 (ENSMUSG00000027714)	Ccna2 (ENSMUSG00000027715)	Bbs7 (ENSMUSG00000037325)
Ryukyu mouse	MODERN SPECIES	12	Slc7a14 (MGP_CAROLIEiJ_G0024912)	Kcnmb2 (MGP_CAROLIEiJ_G0024913) ##7	Zmat3 (MGP_CAROLIEiJ_G0024914)	Pik3ca (MGP_CAROLIEiJ_G0024915)	Kcnmb3 (MGP_CAROLIEiJ_G0024916) #7	Zfp639 (MGP_CAROLIEiJ_G0024917) #8	MGP_CAROLIEiJ_G0024918 #9	Gnb4 (MGP_CAROLIEiJ_G0024919) #10	Actl6a (MGP_CAROLIEiJ_G0024920) #11	Mrpl47 (MGP_CAROLIEiJ_G0024921) #12	Ndufb5 (MGP_CAROLIEiJ_G0024922) #14	Usp13 (MGP_CAROLIEiJ_G0024923) #15	Pex5l (MGP_CAROLIEiJ_G0024924) #16	Ttc14 (MGP_CAROLIEiJ_G0024925) #18	Ccdc39 (MGP_CAROLIEiJ_G0024926) #20	Fxr1 (MGP_CAROLIEiJ_G0024927) #22	MGP_CAROLIEiJ_G0024928 ##23	Sox2 (MGP_CAROLIEiJ_G0024929) #25	Atp11b (MGP_CAROLIEiJ_G0024930) #27	MGP_CAROLIEiJ_G0024931 #28	Mccc1 (MGP_CAROLIEiJ_G0024932) #29	MGP_CAROLIEiJ_G0024933	MGP_CAROLIEiJ_G0024934	Zfp267 (MGP_CAROLIEiJ_G0024935)	Qrfpr (MGP_CAROLIEiJ_G0024936)	Anxa5 (MGP_CAROLIEiJ_G0024937)	MGP_CAROLIEiJ_G0024938	Exosc9 (MGP_CAROLIEiJ_G0024939)	Ccna2 (MGP_CAROLIEiJ_G0024940)	Bbs7 (MGP_CAROLIEiJ_G0024941)	Trpc3 (MGP_CAROLIEiJ_G0024942)
Shrew mouse	MODERN SPECIES	17	Cldn11 (MGP_PahariEiJ_G0026356)	Slc7a14 (MGP_PahariEiJ_G0026357)	Kcnmb2 (MGP_PahariEiJ_G0026358) ##7	Zmat3 (MGP_PahariEiJ_G0026359)	Pik3ca (MGP_PahariEiJ_G0026360)	Kcnmb3 (MGP_PahariEiJ_G0026361) #7	Zfp639 (MGP_PahariEiJ_G0026362) #8	Mfn1 (MGP_PahariEiJ_G0026363) #9	Gnb4 (MGP_PahariEiJ_G0026364) #10	Actl6a (MGP_PahariEiJ_G0026365) #11	Mrpl47 (MGP_PahariEiJ_G0026366) #12	Ndufb5 (MGP_PahariEiJ_G0026367) #14	Usp13 (MGP_PahariEiJ_G0026368) #15	Pex5l (MGP_PahariEiJ_G0026369) #16	MGP_PahariEiJ_G0026370 #18	Fxr1 (MGP_PahariEiJ_G0026371) #22	Dnajc19 (MGP_PahariEiJ_G0026372) ##23	Sox2 (MGP_PahariEiJ_G0026373) #25	MGP_PahariEiJ_G0026374 #28	Zfp267 (MGP_PahariEiJ_G0026375)	Qrfpr (MGP_PahariEiJ_G0026376)	Anxa5 (MGP_PahariEiJ_G0026377)	MGP_PahariEiJ_G0026378	Exosc9 (MGP_PahariEiJ_G0026379)	Ccna2 (MGP_PahariEiJ_G0026380)	Bbs7 (MGP_PahariEiJ_G0026381)	Trpc3 (MGP_PahariEiJ_G0026382)	Bltp1 (MGP_PahariEiJ_G0026383)	Adad1 (MGP_PahariEiJ_G0026384)	Il2 (MGP_PahariEiJ_G0026385)	Il21 (MGP_PahariEiJ_G0026386)
Rat	MODERN SPECIES	11	Egfem1 (ENSRNOG00000023908)	Kcnmb2 (ENSRNOG00000010094) ##7	Zmat3 (ENSRNOG00000063864)	Pik3ca (ENSRNOG00000056371)	Kcnmb3 (ENSRNOG00000027836) #7	Zfp639 (ENSRNOG00000043053) #8	Mfn1 (ENSRNOG00000011057) #9	Gnb4 (ENSRNOG00000011070) #10	Actl6a (ENSRNOG00000011553) #11	Mrpl47 (ENSRNOG00000011639) #12	Ndufb5 (ENSRNOG00000011949) #14	Usp13 (ENSRNOG00000030639) #15	Pex5l (ENSRNOG00000011211) #16	Ttc14 (ENSRNOG00000011261) #18	Ccdc39 (ENSRNOG00000011440) #20	Fxr1 (ENSRNOG00000051480) #22	Dnajc19 (ENSRNOG00000049819) ##23	Sox2 (ENSRNOG00000012199) #25	Atp11b (ENSRNOG00000052116) #27	Dcun1d1 (ENSRNOG00000012734) #28	Mccc1 (ENSRNOG00000013293) #29	Ccdc144b (ENSRNOG00000056177)	ENSRNOG00000065565	Acad9 (ENSRNOG00000014178)	Zfp267 (ENSRNOG00000042283)	ENSRNOG00000066024	Arsl (ENSRNOG00000028350)	Qrfpr (ENSRNOG00000014414)	Anxa5 (ENSRNOG00000014453)	Smim43 (ENSRNOG00000070831)	Exosc9 (ENSRNOG00000014674)
Cricetidae	ANCESTRAL SPECIES	6	ENSGT00950000183039.B.b.a ##7	ENSGT00730000111202	ENSGT00940000155531.b	ENSGT00950000183039.B.a #7	ENSGT00940000156335 #8	ENSGT00390000013727.d #9	ENSGT01000000214413.b.a.a #10	ENSGT00940000156305 #11	ENSGT00390000002837 #12	ENSGT00390000009980 #14	ENSGT00940000157401 #15	ENSGT00940000155931 #16	ENSGT00390000013701.g.a #18	ENSGT00390000013701.g.b #18	ENSGT00390000015010 #20	ENSGT00950000183189.a.b.a #22	ENSGT00940000154384.h.a ##23	ENSGT00940000160614 #25	ENSGT00940000156162.C.k #27	ENSGT00940000154552.b #28	ENSGT00940000156941 #29	ENSGT00940000153661.b.b	ENSGT00940000153661.a.a	ENSGT00940000157312	ENSGT00950000183169.C.d	ENSGT00940000155988	ENSGT00950000183130.A	ENSGT00940000155372	ENSGT00390000012346	ENSGT01060000248588.a.c.b	ENSGT00640000091487
Cricetidae_B	ANCESTRAL SPECIES	55	ENSGT00950000183039.B.b.a ##7	ENSGT00730000111202	ENSGT00940000155531.b	ENSGT00950000183039.B.a #7	ENSGT00940000156335 #8	ENSGT00390000013727.d #9	ENSGT01000000214413.b.a.a #10	ENSGT00940000156305 #11	ENSGT00390000002837 #12	ENSGT00390000009980 #14	ENSGT00940000157401 #15	ENSGT00940000155931 #16	ENSGT00390000013701.g.a #18	ENSGT00390000013701.g.b #18	ENSGT00390000015010 #20	ENSGT00950000183189.a.b.a #22	ENSGT00940000154384.h.a ##23	ENSGT00940000154384.g #23	ENSGT00940000160614 #25	ENSGT00940000156162.C.k #27	ENSGT00940000154552.b #28	ENSGT00940000156941 #29	ENSGT00940000153661.b.b	ENSGT00940000157312	ENSGT00950000183169.C.d
Northern American deer mouse	MODERN SPECIES	19	Kcnmb2 (ENSPEMG00000000476) ##7	ENSPEMG00000026565	Zmat3 (ENSPEMG00000019154)	Pik3ca (ENSPEMG00000018399)	Kcnmb3 (ENSPEMG00000015081) #7	Zfp639 (ENSPEMG00000011611) #8	Mfn1 (ENSPEMG00000010348) #9	Gnb4 (ENSPEMG00000028778) #10	Actl6a (ENSPEMG00000015742) #11	Mrpl47 (ENSPEMG00000026294) #12	Ndufb5 (ENSPEMG00000018635) #14	Usp13 (ENSPEMG00000001021) #15	Pex5l (ENSPEMG00000006300) #16	Ttc14 (ENSPEMG00000013671) #18	Ccdc39 (ENSPEMG00000017829) #20	Fxr1 (ENSPEMG00000012962) #22	ENSPEMG00000006887 ##23	ENSPEMG00000026113	Sox2 (ENSPEMG00000013974) #25	ENSPEMG00000024881	Atp11b (ENSPEMG00000001656) #27	ENSPEMG00000018868 #28	Mccc1 (ENSPEMG00000014164) #29	ENSPEMG00000011597	Acad9 (ENSPEMG00000010549)	Zfp267 (ENSPEMG00000028230)	Qrfpr (ENSPEMG00000000133)	ENSPEMG00000001402	ENSPEMG00000026454	Anxa5 (ENSPEMG00000015439)	ENSPEMG00000025311
Prairie vole	MODERN SPECIES		Kcnmb2 (ENSMOCG00000017078) ##7	Zmat3 (ENSMOCG00000018844)	Pik3ca (ENSMOCG00000013980)	Kcnmb3 (ENSMOCG00000016804) #7	Zfp639 (ENSMOCG00000020301) #8	Mfn1 (ENSMOCG00000019248) #9	Gnb4 (ENSMOCG00000015281) #10	Actl6a (ENSMOCG00000014148) #11	ENSMOCG00000007933 #12	ENSMOCG00000019293 #14	Usp13 (ENSMOCG00000015377) #15	Pex5l (ENSMOCG00000014372) #16	ENSMOCG00000020574 #18	ENSMOCG00000012924 #18	Ccdc39 (ENSMOCG00000018440) #20	Fxr1 (ENSMOCG00000017707) #22	Dnajc19 (ENSMOCG00000004841) #23	Sox2 (ENSMOCG00000008169) #25	ENSMOCG00000011558	Atp11b (ENSMOCG00000013153) #27	ENSMOCG00000005771 #28	Mccc1 (ENSMOCG00000003671) #29	ENSMOCG00000009970	Acad9 (ENSMOCG00000013263)	Zfp267 (ENSMOCG00000020503)	Scfd1 (ENSMOCG00000017239)	G2e3 (ENSMOCG00000012420)	Prkd1 (ENSMOCG00000021339)	Foxg1 (ENSMOCG00000008016)	ENSMOCG00000007728	Nova1 (ENSMOCG00000006277)
Cricetinae	ANCESTRAL SPECIES	13	ENSGT00950000183039.B.b.a ##7	ENSGT00730000111202	ENSGT00940000155531.b	ENSGT00950000183039.B.a #7	ENSGT00940000156335 #8	ENSGT00390000013727.d #9	ENSGT01000000214413.b.a.a #10	ENSGT00940000156305 #11	ENSGT00390000002837 #12	ENSGT00390000009980 #14	ENSGT00940000157401 #15	ENSGT00940000155931 #16	ENSGT00390000013701.g.a #18	ENSGT00390000013701.g.b #18	ENSGT00390000015010 #20	ENSGT00950000183189.a.b.a #22	ENSGT00940000154384.h.a ##23	ENSGT00940000160614 #25	ENSGT00940000156162.C.k #27	ENSGT00940000154552.b #28	ENSGT00940000156941 #29	ENSGT00940000153661.a.a	ENSGT00940000157312	ENSGT00950000183169.C.d	ENSGT01070000253744.a.b	ENSGT00940000155988	ENSGT00950000183130.A	ENSGT00940000155372	ENSGT00390000012346	ENSGT01060000248588.a.c.b	ENSGT00640000091487
Golden Hamster	MODERN SPECIES	636	Egfem1 (ENSMAUG00000012184)	Kcnmb2 (ENSMAUG00000006173) ##7	Zmat3 (ENSMAUG00000001986)	Pik3ca (ENSMAUG00000019874)	Kcnmb3 (ENSMAUG00000005213) #7	Mfn1 (ENSMAUG00000010778) #9	Gnb4 (ENSMAUG00000011589) #10	ENSMAUG00000018855 #11	Mrpl47 (ENSMAUG00000010772) #12	Ndufb5 (ENSMAUG00000017888) #14	Usp13 (ENSMAUG00000008996) #15	Pex5l (ENSMAUG00000011108) #16	ENSMAUG00000009258 #18	ENSMAUG00000000140 #18	Ccdc39 (ENSMAUG00000009369) #20	Fxr1 (ENSMAUG00000001188) #22	ENSMAUG00000011285 ##23	Sox2 (ENSMAUG00000017052) #25	Atp11b (ENSMAUG00000000325) #27	ENSMAUG00000018021 #28	ENSMAUG00000019275	Mccc1 (ENSMAUG00000018926) #29	ENSMAUG00000000987	ENSMAUG00000011985	Acad9 (ENSMAUG00000013695)	Zfp267 (ENSMAUG00000000240)	Qrfpr (ENSMAUG00000016873)	Anxa5 (ENSMAUG00000014445)	Exosc9 (ENSMAUG00000008629)	Ccna2 (ENSMAUG00000018247)	Bbs7 (ENSMAUG00000001973)
Chinese hamster chok1gshd	MODERN SPECIES	352	Egfem1 (ENSCGRG00001021334)	Kcnmb2 (ENSCGRG00001009106) ##7	Zmat3 (ENSCGRG00001012339)	Pik3ca (ENSCGRG00001019897)	Kcnmb3 (ENSCGRG00001008742) #7	ENSCGRG00001021748 #8	ENSCGRG00001022585 #9	Gnb4 (ENSCGRG00001021439) #10	Actl6a (ENSCGRG00001013395) #11	Mrpl47 (ENSCGRG00001015111) #12	Ndufb5 (ENSCGRG00001005505) #14	Usp13 (ENSCGRG00001017123) #15	Pex5l (ENSCGRG00001018482) #16	Ttc14 (ENSCGRG00001021605) #18	Ccdc39 (ENSCGRG00001018347) #20	Fxr1 (ENSCGRG00001024795) #22	ENSCGRG00001000090 ##23	Sox2 (ENSCGRG00001008732) #25	Atp11b (ENSCGRG00001021308) #27	ENSCGRG00001013592	ENSCGRG00001019778 #28	Mccc1 (ENSCGRG00001012469) #29	ENSCGRG00001017668	Acad9 (ENSCGRG00001017444)	Zfp267 (ENSCGRG00001019794)	Qrfpr (ENSCGRG00001015065)	Anxa5 (ENSCGRG00001011395)	Exosc9 (ENSCGRG00001023030)	Ccna2 (ENSCGRG00001021415)	Bbs7 (ENSCGRG00001022476)	Trpc3 (ENSCGRG00001021196)
Upper Galilee mountains blind mole rat	MODERN SPECIES	1036		Kcnmb2 (ENSNGAG00000023449) ##7	Zmat3 (ENSNGAG00000023602)	Pik3ca (ENSNGAG00000011770)	Kcnmb3 (ENSNGAG00000023104) #7	Zfp639 (ENSNGAG00000017433) #8	Mfn1 (ENSNGAG00000022452) #9	Gnb4 (ENSNGAG00000023855) #10	Actl6a (ENSNGAG00000023000) #11	Mrpl47 (ENSNGAG00000022354) #12	Ndufb5 (ENSNGAG00000019121) #14	Usp13 (ENSNGAG00000008457) #15	Pex5l (ENSNGAG00000021052) #16	Ttc14 (ENSNGAG00000019537) #18	Ccdc39 (ENSNGAG00000023870) #20	Fxr1 (ENSNGAG00000021726) #22	ENSNGAG00000012574 ##23
Lesser Egyptian jerboa	MODERN SPECIES	47	ENSJJAG00000012112	Kcnmb2 (ENSJJAG00000021914) ##7	Zmat3 (ENSJJAG00000004288)	Pik3ca (ENSJJAG00000021453)	Kcnmb3 (ENSJJAG00000023050) #7	ENSJJAG00000024013 #8	Mfn1 (ENSJJAG00000019731) #9	ENSJJAG00000023681 #10	Actl6a (ENSJJAG00000017810) #11	Mrpl47 (ENSJJAG00000020002) #12	Ndufb5 (ENSJJAG00000012502) #14	Usp13 (ENSJJAG00000018696) #15	Pex5l (ENSJJAG00000000620) #16	ENSJJAG00000023040 #18	Ccdc39 (ENSJJAG00000016989) #20	Fxr1 (ENSJJAG00000019175) #22	ENSJJAG00000015744 ##23	Sox2 (ENSJJAG00000002483) #25	Atp11b (ENSJJAG00000018460) #27	ENSJJAG00000019826 #28	Mccc1 (ENSJJAG00000003543) #29	ENSJJAG00000016856	Ptpdc1 (ENSJJAG00000015386)	Barx1 (ENSJJAG00000012954)	ENSJJAG00000016156	Phf2 (ENSJJAG00000019075)	Fam120a (ENSJJAG00000010692)	Wnk2 (ENSJJAG00000019510)	ENSJJAG00000015723	Card19 (ENSJJAG00000018218)	Susd3 (ENSJJAG00000023422)
Kangaroo rat	MODERN SPECIES	493					Zfp639 (ENSDORG00000004733) #8	Mfn1 (ENSDORG00000016388) #9	Gnb4 (ENSDORG00000015363) #10	Actl6a (ENSDORG00000007648) #11	Mrpl47 (ENSDORG00000007650) #12	Ndufb5 (ENSDORG00000007651) #14	ENSDORG00000001060	Usp13 (ENSDORG00000013004) #15	Pex5l (ENSDORG00000013007) #16	Ttc14 (ENSDORG00000002727) #18	Ccdc39 (ENSDORG00000002728) #20	Fxr1 (ENSDORG00000005853) #22	ENSDORG00000005862 ##23
Lagomorpha	ANCESTRAL SPECIES	6	ENSGT00940000153421.a.b	ENSGT00950000183039.B.b.a ##7	ENSGT00730000111202	ENSGT00940000155531.b	ENSGT00950000183039.B.a #7	ENSGT00390000013727.d #9	ENSGT01000000214413.b.a.a #10	ENSGT00940000156305 #11	ENSGT00390000002837 #12	ENSGT00390000009980 #14	ENSGT00940000157401 #15	ENSGT00910000147128	ENSGT00940000155931 #16	ENSGT00390000013701 #18	ENSGT00390000015010 #20	ENSGT00950000183189.a.b.a #22	ENSGT00940000154384.h.a ##23	ENSGT00940000156162.C.k #27	ENSGT00940000154552.b #28	ENSGT00940000156941 #29	ENSGT00950000182899.C.a #30	ENSGT00550000074917	ENSGT00940000153783.b.b.c.a.b	ENSGT00860000135739	ENSGT00950000182930.B	ENSGT00950000182930.A.a	ENSGT00950000182930.A.b	ENSGT00950000182930.C	ENSGT00940000155792	ENSGT00470000042284	ENSGT00940000160342
Rabbit	MODERN SPECIES	5	TBL1XR1 (ENSOCUG00000017078)	KCNMB2 (ENSOCUG00000005494) ##7	ZMAT3 (ENSOCUG00000004658)	PIK3CA (ENSOCUG00000010631)	KCNMB3 (ENSOCUG00000010643) #7	MFN1 (ENSOCUG00000000928) #9	GNB4 (ENSOCUG00000000931) #10	ACTL6A (ENSOCUG00000017883) #11	MRPL47 (ENSOCUG00000017886) #12	NDUFB5 (ENSOCUG00000017887) #14	USP13 (ENSOCUG00000006043) #15	ENSOCUG00000039309	PEX5L (ENSOCUG00000006053) #16	TTC14 (ENSOCUG00000000806) #18	CCDC39 (ENSOCUG00000000812) #20	FXR1 (ENSOCUG00000023518) #22	DNAJC19 (ENSOCUG00000014043) ##23	ENSOCUG00000035765	ENSOCUG00000031658	ENSOCUG00000028029	ATP11B (ENSOCUG00000012358) #27	DCUN1D1 (ENSOCUG00000012386) #28	MCCC1 (ENSOCUG00000012393) #29	ENSOCUG00000005563 #30	RFC4 (ENSOCUG00000005014)	ENSOCUG00000005011	ENSOCUG00000031344	KNG1 (ENSOCUG00000005003)	HRG (ENSOCUG00000011687)	FETUB (ENSOCUG00000001032)	AHSG (ENSOCUG00000002057)
Pika	MODERN SPECIES	365																FXR1 (ENSOPRG00000009223) #22	DNAJC19 (ENSOPRG00000009256) ##23
Tree shrew	MODERN SPECIES	553																ENSTBEG00000007370 #22
Primates	ANCESTRAL SPECIES	1	ENSGT00940000155531.b	ENSGT00910000147422	ENSGT00950000183039.B.a #7	ENSGT00940000156335 #8	ENSGT00390000013727.d #9	ENSGT01000000214413.b.a.a #10	ENSGT00940000156305 #11	ENSGT00390000002837 #12	ENSGT00960000190585 #13	ENSGT00390000009980 #14	ENSGT00940000157401 #15	ENSGT00910000147128	ENSGT00940000155931 #16	ENSGT00390000013701 #18	ENSGT00390000015010 #20	ENSGT00950000183189.a.b.a #22	ENSGT00940000154384.h.a ##23	ENSGT00940000160614 #25	ENSGT00910000146924	ENSGT00940000156162.C.k #27	ENSGT00940000154552.b #28	ENSGT00940000156941 #29	ENSGT00950000182899.C.a #30	ENSGT00940000164015	ENSGT00940000159676 #31	ENSGT00940000161734 #32	ENSGT00940000154345.b	ENSGT00940000154345.a	ENSGT00940000156789	ENSGT00530000063947.B	ENSGT00390000013063
Strepsirrhini	ANCESTRAL SPECIES	1	ENSGT00730000111202	ENSGT00940000155531.b	ENSGT00950000183039.B.a #7	ENSGT00940000156335 #8	ENSGT00390000013727.d #9	ENSGT01000000214413.b.a.a #10	ENSGT00940000156305 #11	ENSGT00390000002837 #12	ENSGT00960000190585 #13	ENSGT00390000009980.p #14	ENSGT00940000157401 #15	ENSGT00910000147128	ENSGT00940000155931 #16	ENSGT00390000013701 #18	ENSGT00390000015010 #20	ENSGT00950000183189.a.b.a #22	ENSGT00940000154384.h.a ##23	ENSGT00940000160614 #25	ENSGT00910000146924	ENSGT00940000156162.C.k #27	ENSGT00940000154552.b #28	ENSGT00940000156941 #29	ENSGT00950000182899.C.a #30	ENSGT00940000161734 #32	ENSGT00940000159676 #31	ENSGT00940000154345.b	ENSGT00940000154345.a	ENSGT00940000156789	ENSGT00530000063947.B	ENSGT00390000013063	ENSGT00940000163497
Lemuriformes	ANCESTRAL SPECIES	9	ENSGT00730000111202	ENSGT00940000155531.b	ENSGT00950000183039.B.a #7	ENSGT00940000156335 #8	ENSGT00390000013727.d #9	ENSGT01000000214413.b.a.a #10	ENSGT00940000156305 #11	ENSGT00390000002837 #12	ENSGT00960000190585 #13	ENSGT00390000009980.p #14	ENSGT00940000157401 #15	ENSGT00910000147128	ENSGT00940000155931 #16	ENSGT00390000013701 #18	ENSGT00390000015010 #20	ENSGT00950000183189.a.b.a #22	ENSGT00940000154384.h.a.g.a ##23	ENSGT00940000160614 #25	ENSGT00910000146924	ENSGT00940000156162.C.k #27	ENSGT00940000154552.b #28	ENSGT00940000156941 #29	ENSGT00950000182899.C.a #30	ENSGT00940000159676 #31	ENSGT00940000161734 #32	ENSGT00940000164826	ENSGT00940000154345.b	ENSGT00940000154345.a	ENSGT00940000156789	ENSGT00530000063947.B	ENSGT00390000013063
Lemuriformes_a	ANCESTRAL SPECIES	9	ENSGT00730000111202	ENSGT00940000155531.b	ENSGT00950000183039.B.a #7	ENSGT00940000156335 #8	ENSGT00390000013727.d #9	ENSGT01000000214413.b.a.a #10	ENSGT00940000156305 #11	ENSGT00390000002837 #12	ENSGT00960000190585 #13	ENSGT00390000009980.p #14	ENSGT00940000157401 #15	ENSGT00910000147128	ENSGT00940000155931 #16	ENSGT00390000013701 #18	ENSGT00390000015010 #20	ENSGT00950000183189.a.b.a #22	ENSGT00940000154384.h.a.g.a ##23	ENSGT00940000160614 #25	ENSGT00940000156162.C.k #27	ENSGT00940000154552.b #28	ENSGT00940000156941 #29	ENSGT00950000182899.C.a #30	ENSGT00940000161734 #32	ENSGT00940000164826	ENSGT00940000154345.b	ENSGT00940000154345.a	ENSGT00940000156789	ENSGT00530000063947.B	ENSGT00390000013063	ENSGT00940000163497	ENSGT00940000155470.b
Greater bamboo lemur	MODERN SPECIES	177												ENSPSMG00000011929 #20	ENSPSMG00000011919	ENSPSMG00000011908	ENSPSMG00000011886	FXR1 (ENSPSMG00000011829) #22	ENSPSMG00000011691 ##23	ENSPSMG00000011678	SOX2 (ENSPSMG00000011661) #25	ENSPSMG00000011653
Coquerels sifaka	MODERN SPECIES	162	ZNF639 (ENSPCOG00000025183) #8	MFN1 (ENSPCOG00000018204) #9	GNB4 (ENSPCOG00000023050) #10	ENSPCOG00000023805	ACTL6A (ENSPCOG00000027739) #11	MRPL47 (ENSPCOG00000019367) #12	ENSPCOG00000025389 #14	ENSPCOG00000023588 #14	USP13 (ENSPCOG00000000179) #15	ENSPCOG00000028880	PEX5L (ENSPCOG00000002922) #16	TTC14 (ENSPCOG00000027629) #18	CCDC39 (ENSPCOG00000018971) #20	ENSPCOG00000026996	ENSPCOG00000025037	FXR1 (ENSPCOG00000020057) #22	DNAJC19 (ENSPCOG00000022644) ##23
Mouse lemur	DUPLICATION
Mouse lemur	MODERN SPECIES		ZMAT3 (ENSMICG00000049501)	PIK3CA (ENSMICG00000049155)	KCNMB3 (ENSMICG00000048999) #7	ENSMICG00000048810 #8	MFN1 (ENSMICG00000049257) #9	GNB4 (ENSMICG00000049251) #10	ACTL6A (ENSMICG00000049032) #11	MRPL47 (ENSMICG00000049377) #12	ENSMICG00000049551 #14	USP13 (ENSMICG00000049124) #15	ENSMICG00000049219	PEX5L (ENSMICG00000048938) #16	TTC14 (ENSMICG00000049351) #18	CCDC39 (ENSMICG00000048849) #20	ENSMICG00000049410	ENSMICG00000048978 #22	ENSMICG00000049008 ##23	ENSMICG00000049314	ENSMICG00000049506	SOX2 (ENSMICG00000049239) #25	ENSMICG00000048904	ATP11B (ENSMICG00000049475) #27	ENSMICG00000049045 #28	MCCC1 (ENSMICG00000048884) #29	ENSMICG00000049005 #30	MCF2L2 (ENSMICG00000049191) #32	B3GNT5 (ENSMICG00000049049) #31	ENSMICG00000049437	ENSMICG00000049467	KLHL24 (ENSMICG00000049481)	YEATS2 (ENSMICG00000049411)
Mouse lemur	MODERN SPECIES	28	ENSMICG00000003714	ENSMICG00000044751	ENSMICG00000031829	HLA-DOB (ENSMICG00000034483)	TAP2 (ENSMICG00000015245)	PSMB8 (ENSMICG00000015254)	TAP1 (ENSMICG00000015264)	PSMB9 (ENSMICG00000015307)	ENSMICG00000031166	ENSMICG00000035395	SFTA2 (ENSMICG00000030909)	SYNGAP1 (ENSMICG00000005678)	CUTA (ENSMICG00000005673)	PHF1 (ENSMICG00000005660)	KIFC1 (ENSMICG00000005648)	ENSMICG00000033163 #22	DAXX (ENSMICG00000000933)	TAPBP (ENSMICG00000042293)	RGL2 (ENSMICG00000000926)	PFDN6 (ENSMICG00000000922)	WDR46 (ENSMICG00000000916)	ENSMICG00000035485	VPS52 (ENSMICG00000027900)	RING1 (ENSMICG00000030050)	HSD17B8 (ENSMICG00000000908)	SLC39A7 (ENSMICG00000000905)	RXRB (ENSMICG00000000899)	COL11A2 (ENSMICG00000000879)	ENSMICG00000001373	HLA-DPB1 (ENSMICG00000030867)	HLA-DPA1 (ENSMICG00000003711)
Bushbaby	MODERN SPECIES	281																FXR1 (ENSOGAG00000008751) #22	ENSOGAG00000008754 ##23	SOX2 (ENSOGAG00000029165) #25	ATP11B (ENSOGAG00000005672) #27	DCUN1D1 (ENSOGAG00000000658) #28	MCCC1 (ENSOGAG00000000659) #29	ENSOGAG00000000661 #30	MCF2L2 (ENSOGAG00000000662) #32	B3GNT5 (ENSOGAG00000027145) #31	KLHL6 (ENSOGAG00000000666)	KLHL24 (ENSOGAG00000033529)	YEATS2 (ENSOGAG00000013954)	MAP6D1 (ENSOGAG00000030318)	PARL (ENSOGAG00000006126)	VPS53 (ENSOGAG00000001350)	TLCD3A (ENSOGAG00000001351)
Haplorrhini	ANCESTRAL SPECIES	5	ENSGT00730000111202	ENSGT00940000155531.b	ENSGT00910000147422	ENSGT00950000183039.B.a #7	ENSGT00940000156335 #8	ENSGT00390000013727.d #9	ENSGT01000000214413.b.a.a #10	ENSGT00940000156305 #11	ENSGT00390000002837 #12	ENSGT00390000009980 #14	ENSGT00940000157401 #15	ENSGT00910000147128	ENSGT00940000155931 #16	ENSGT00390000013701 #18	ENSGT00390000015010 #20	ENSGT00950000183189.a.b.a #22	ENSGT00940000154384.h.a ##23	ENSGT00940000160614 #25	ENSGT00910000146924	ENSGT00940000156162.C.k #27	ENSGT00940000154552.b #28	ENSGT00940000156941 #29	ENSGT00950000182899.C.a #30	ENSGT00940000164015	ENSGT00940000159676 #31	ENSGT00940000161734 #32	ENSGT00940000154345.b	ENSGT00940000154345.a	ENSGT00940000156789	ENSGT00530000063947.B	ENSGT00390000013063
Tarsier	MODERN SPECIES	6410																FXR1 (ENSTSYG00000001610) #22	DNAJC19 (ENSTSYG00000001611) ##23	MAF (ENSTSYG00000027792)
Simiiformes	ANCESTRAL SPECIES	1	ENSGT00730000111202	ENSGT00940000155531.b	ENSGT00910000147422	ENSGT00950000183039.B.a #7	ENSGT00940000156335 #8	ENSGT00390000013727.d #9	ENSGT01000000214413.b.a.a #10	ENSGT00940000156305 #11	ENSGT00390000002837 #12	ENSGT00390000009980 #14	ENSGT00940000157401 #15	ENSGT00910000147128	ENSGT00940000155931 #16	ENSGT00390000013701 #18	ENSGT00390000015010 #20	ENSGT00950000183189.a.b.a #22	ENSGT00940000154384.h.a ##23	ENSGT00940000160614 #25	ENSGT00910000146924	ENSGT00940000156162.C.k #27	ENSGT00940000154552.b #28	ENSGT00940000156941 #29	ENSGT00950000182899.C.a #30	ENSGT00940000164015	ENSGT00940000159676 #31	ENSGT00940000161734 #32	ENSGT00940000154345.b	ENSGT00940000154345.a	ENSGT00940000156789	ENSGT00530000063947.B	ENSGT00390000013063
Platyrrhini	ANCESTRAL SPECIES	43	ENSGT00950000183039.B.b.a ##7	ENSGT00730000111202	ENSGT00940000155531.b	ENSGT00950000183039.B.a #7	ENSGT00940000156335 #8	ENSGT00390000013727.d #9	ENSGT01000000214413.b.a.a #10	ENSGT00940000156305 #11	ENSGT00390000002837.r #12	ENSGT00390000009980 #14	ENSGT00940000157401 #15	ENSGT00910000147128	ENSGT00940000155931 #16	ENSGT00390000013701 #18	ENSGT00390000015010 #20	ENSGT00950000183189.a.b.a #22	ENSGT00940000154384.h.a.c.b ##23	ENSGT00940000156162.C.k #27	ENSGT00940000154552.b.f #28	ENSGT00940000156941.j #29	ENSGT00950000182899.C.a #30	ENSGT00940000161734 #32	ENSGT00940000159676 #31	ENSGT00940000154345.b	ENSGT00940000154345.a	ENSGT00940000156789	ENSGT00530000063947.B	ENSGT00390000013063.p	ENSGT00940000155470.b	ENSGT00940000156739.b.b.a	ENSGT00940000156739.b.a
Mas night monkey	MODERN SPECIES	793																FXR1 (ENSANAG00000026001) #22	DNAJC19 (ENSANAG00000023901) ##23	SOX2 (ENSANAG00000000047) #25	ENSANAG00000023464	ENSANAG00000018148	ATP11B (ENSANAG00000033054) #27	ENSANAG00000020880 #28	MCCC1 (ENSANAG00000028235) #29	LAMP3 (ENSANAG00000021411)	MCF2L2 (ENSANAG00000030096) #32	KLHL6 (ENSANAG00000034934)	KLHL24 (ENSANAG00000030957)	ENSANAG00000032967	YEATS2 (ENSANAG00000034729)	MAP6D1 (ENSANAG00000031904)	ENSANAG00000028369
Cebidae	ANCESTRAL SPECIES	14	ENSGT00950000183039.B.b.a ##7	ENSGT00730000111202	ENSGT00940000155531.b	ENSGT00950000183039.B.a #7	ENSGT00940000156335 #8	ENSGT00390000013727.d #9	ENSGT01000000214413.b.a.a #10	ENSGT00940000156305 #11	ENSGT00390000002837.r #12	ENSGT00390000002837.q #12	ENSGT00390000009980 #14	ENSGT00940000157401 #15	ENSGT00940000155931 #16	ENSGT00390000013701 #18	ENSGT00390000015010 #20	ENSGT00950000183189.a.b.a #22	ENSGT00940000154384.h.a.c.b.a ##23	ENSGT00940000160614 #25	ENSGT00940000156162.C.k #27	ENSGT00940000154552.b.f #28	ENSGT00940000156941.j #29	ENSGT00950000182899.C.a #30	ENSGT00940000161734 #32	ENSGT00940000159676 #31	ENSGT00940000154345.b	ENSGT00940000154345.a	ENSGT00940000156789	ENSGT00530000063947.B	ENSGT00390000013063.p	ENSGT00940000155470.b	ENSGT00940000156739.b.b.a
Marmoset	MODERN SPECIES	6	PIK3CA (ENSCJAG00000013294)	GNB4 (ENSCJAG00000064977) #10	ENSCJAG00000069983 #7	ZNF639 (ENSCJAG00000013246) #8	MFN1 (ENSCJAG00000013155) #9	ACTL6A (ENSCJAG00000013036) #11	ENSCJAG00000013028 #12	NDUFB5 (ENSCJAG00000013015) #14	ENSCJAG00000039957	USP13 (ENSCJAG00000012999) #15	ENSCJAG00000077201	PEX5L (ENSCJAG00000012957) #16	ENSCJAG00000081830	TTC14 (ENSCJAG00000012923) #18	CCDC39 (ENSCJAG00000012901) #20	FXR1 (ENSCJAG00000012802) #22	ENSCJAG00000012795 ##23	ENSCJAG00000069793	ENSCJAG00000080211	SOX2 (ENSCJAG00000008401) #25	ENSCJAG00000070332	ENSCJAG00000076627	ENSCJAG00000072440	ENSCJAG00000076242	ATP11B (ENSCJAG00000005176) #27	DCUN1D1 (ENSCJAG00000005148) #28	MCCC1 (ENSCJAG00000005103) #29	ENSCJAG00000081113	MCF2L2 (ENSCJAG00000021205) #32	B3GNT5 (ENSCJAG00000059459) #31	KLHL6 (ENSCJAG00000021212)
Cebidae_a	ANCESTRAL SPECIES	14	ENSGT00950000183039.B.b.a ##7	ENSGT00730000111202	ENSGT00940000155531.b	ENSGT00950000183039.B.a #7	ENSGT00940000156335 #8	ENSGT00390000013727.d #9	ENSGT01000000214413.b.a.a #10	ENSGT00940000156305 #11	ENSGT00390000002837.r #12	ENSGT00390000014814.a.b.a.a.b	ENSGT00390000009980 #14	ENSGT00940000157401 #15	ENSGT00940000155931 #16	ENSGT00390000013701 #18	ENSGT00390000015010 #20	ENSGT00950000183189.a.b.a #22	ENSGT00940000154384.h.a.c.b.a.a ##23	ENSGT00940000160614 #25	ENSGT00940000156162.C.k #27	ENSGT00940000154552.b.f #28	ENSGT00940000156941.j #29	ENSGT00950000182899.C.a #30	ENSGT00940000161734 #32	ENSGT00940000154345.b	ENSGT00940000154345.a	ENSGT00940000156789	ENSGT00530000063947.B	ENSGT00390000013063.p	ENSGT00940000155470.b	ENSGT00940000156739.b.b.a	ENSGT00940000156739.b.a
Bolivian squirrel monkey	MODERN SPECIES	62	KCNMB2 (ENSSBOG00000024312) ##7	ZMAT3 (ENSSBOG00000033332)	PIK3CA (ENSSBOG00000020045)	KCNMB3 (ENSSBOG00000022343) #7	ZNF639 (ENSSBOG00000025502) #8	MFN1 (ENSSBOG00000034184) #9	GNB4 (ENSSBOG00000029068) #10	ACTL6A (ENSSBOG00000027162) #11	MRPL47 (ENSSBOG00000018241) #12	ENSSBOG00000016971	ENSSBOG00000029840 #14	USP13 (ENSSBOG00000026837) #15	PEX5L (ENSSBOG00000027789) #16	TTC14 (ENSSBOG00000024686) #18	CCDC39 (ENSSBOG00000027250) #20	FXR1 (ENSSBOG00000033567) #22	ENSSBOG00000026921 ##23	ATP11B (ENSSBOG00000025969) #27	DCUN1D1 (ENSSBOG00000028062) #28	MCCC1 (ENSSBOG00000026219) #29	ENSSBOG00000021035 #30	MCF2L2 (ENSSBOG00000029425) #32	KLHL6 (ENSSBOG00000020503)	KLHL24 (ENSSBOG00000034313)	YEATS2 (ENSSBOG00000024142)	ENSSBOG00000029528	ENSSBOG00000026916	PARL (ENSSBOG00000023148)	ABCC5 (ENSSBOG00000021176)	ENSSBOG00000013776	HTR3C (ENSSBOG00000029560)
Capuchin	MODERN SPECIES	111	ENSCCAG00000033379	ETV5 (ENSCCAG00000020480)	DGKG (ENSCCAG00000029064)	CRYGS (ENSCCAG00000024626)	TBCCD1 (ENSCCAG00000034607)	DNAJB11 (ENSCCAG00000036818)	AHSG (ENSCCAG00000035436)	FETUB (ENSCCAG00000023367)	HRG (ENSCCAG00000018171)	KNG1 (ENSCCAG00000031351)	ENSCCAG00000026259	ENSCCAG00000021313	EIF4A2 (ENSCCAG00000036268)	RFC4 (ENSCCAG00000029943)	ADIPOQ (ENSCCAG00000031131)	FXR1 (ENSCCAG00000025006) #22	ENSCCAG00000031123 ##23	SOX2 (ENSCCAG00000020109) #25	TCF7L2 (ENSCCAG00000031432)	HABP2 (ENSCCAG00000031203)	NRAP (ENSCCAG00000022013)
Catarrhini	ANCESTRAL SPECIES	2	ENSGT00530000063564.b.e.b	ENSGT00940000156335 #8	ENSGT00390000013727.d #9	ENSGT01000000214413.b.a.a #10	ENSGT00940000154863.db.d	ENSGT00940000156305 #11	ENSGT00390000002837 #12	ENSGT00390000009980 #14	ENSGT00940000157401 #15	ENSGT00910000147128	ENSGT00940000155931 #16	ENSGT00940000154639.n.a	ENSGT00390000013701 #18	ENSGT00390000015010 #20	ENSGT00940000154942.h.q.b	ENSGT00950000183189.a.b.a #22	ENSGT00940000154384.h.a ##23	ENSGT00940000160614 #25	ENSGT00910000146924	ENSGT00940000156162.C.k #27	ENSGT00940000154552.b.g.a #28	ENSGT00940000156941 #29	ENSGT00940000164015	ENSGT00940000159676 #31	ENSGT00940000161734 #32	ENSGT00940000154345.b	ENSGT00940000154345.a	ENSGT00940000156789	ENSGT00910000147149	ENSGT00530000063947.B	ENSGT00390000013063
Cercopithecidae	ANCESTRAL SPECIES	1	ENSGT00940000156335.o #8	ENSGT00390000013727.d #9	ENSGT00910000147799	ENSGT01000000214413.b.a.a #10	ENSGT00940000154863.db.d	ENSGT00940000156305 #11	ENSGT00390000002837 #12	ENSGT00390000009980 #14	ENSGT00940000157401 #15	ENSGT00910000147128	ENSGT00940000155931 #16	ENSGT00940000154639.n.a	ENSGT00390000013701 #18	ENSGT00390000015010 #20	ENSGT00940000154942.h.q.b	ENSGT00950000183189.a.b.a #22	ENSGT00940000154384.h.a ##23	ENSGT00940000160614 #25	ENSGT00910000146924	ENSGT00940000156162.C.k #27	ENSGT00940000154552.b.g.a #28	ENSGT00940000156941 #29	ENSGT00950000182899.C.a #30	ENSGT00940000159676 #31	ENSGT00940000161734 #32	ENSGT00940000154345.b	ENSGT00940000154345.a	ENSGT00940000156789	ENSGT00910000147149	ENSGT00530000063947.B	ENSGT00390000013063
Rhinopithecus	ANCESTRAL SPECIES	202	ENSGT00940000155531.b	ENSGT00950000183039.B.a #7	ENSGT00940000156335.o #8	ENSGT00390000013727.d #9	ENSGT00910000147799	ENSGT01000000214413.b.a.a #10	ENSGT00940000154863.db.d	ENSGT00940000156305 #11	ENSGT00390000002837 #12	ENSGT00390000009980.s #14	ENSGT00940000157401 #15	ENSGT00940000155931 #16	ENSGT00940000154639.n.a	ENSGT00390000013701 #18	ENSGT00390000015010 #20	ENSGT00950000183189.a.b.a #22	ENSGT00940000154384.h.a ##23	ENSGT00940000160614 #25	ENSGT00910000146924	ENSGT00940000154194	ENSGT00940000158205	ENSGT00940000155196.q.a	ENSGT00940000162645	ENSGT00910000146913	ENSGT00940000163645
Golden snub-nosed monkey	MODERN SPECIES	2754														TTC14 (ENSRROG00000045769) #18	CCDC39 (ENSRROG00000039226) #20	FXR1 (ENSRROG00000034524) #22	DNAJC19 (ENSRROG00000033780) ##23
Black snub-nosed monkey	MODERN SPECIES	74	PIK3CA (ENSRBIG00000032867)	KCNMB3 (ENSRBIG00000028540) #7	ENSRBIG00000041214 #8	MFN1 (ENSRBIG00000035520) #9	ENSRBIG00000029392	GNB4 (ENSRBIG00000026920) #10	ENSRBIG00000032218	ACTL6A (ENSRBIG00000036584) #11	MRPL47 (ENSRBIG00000030725) #12	ENSRBIG00000005151 #14	USP13 (ENSRBIG00000035081) #15	PEX5L (ENSRBIG00000020184) #16	ENSRBIG00000033160	TTC14 (ENSRBIG00000039635) #18	CCDC39 (ENSRBIG00000038461) #20	FXR1 (ENSRBIG00000036968) #22	DNAJC19 (ENSRBIG00000041203) ##23	ENSRBIG00000031071	ENSRBIG00000029493
Cercopithecinae	ANCESTRAL SPECIES	5	ENSGT00530000063564.b.e.b	ENSGT00940000156335.o #8	ENSGT00390000013727.d #9	ENSGT00910000147799	ENSGT01000000214413.b.a.a #10	ENSGT00940000154863.db.d	ENSGT00940000156305 #11	ENSGT00390000002837 #12	ENSGT00390000009980 #14	ENSGT00940000157401 #15	ENSGT00910000147128	ENSGT00940000155931 #16	ENSGT00390000013701 #18	ENSGT00390000015010 #20	ENSGT00940000154942.h.q.b	ENSGT00950000183189.a.b.a #22	ENSGT00940000154384.h.a ##23	ENSGT00940000160614 #25	ENSGT00910000146924	ENSGT00940000156162.C.k #27	ENSGT00940000154552.b.g.a #28	ENSGT00940000156941 #29	ENSGT00940000164015	ENSGT00940000159676 #31	ENSGT00940000161734 #32	ENSGT00940000154345.b	ENSGT00940000154345.a	ENSGT00940000156789	ENSGT00910000147149	ENSGT00530000063947.B	ENSGT00390000013063
Cercopithecinae_a	ANCESTRAL SPECIES	5	ENSGT00940000156335.o #8	ENSGT00390000013727.d #9	ENSGT00910000147799	ENSGT01000000214413.b.a.a #10	ENSGT00940000154863.db.d	ENSGT00940000156305 #11	ENSGT00390000002837.m #12	ENSGT00390000009980 #14	ENSGT00940000157401 #15	ENSGT00910000147128	ENSGT00940000155931 #16	ENSGT00940000154639.n.a	ENSGT00390000013701 #18	ENSGT00390000015010 #20	ENSGT00940000154942.h.q.b	ENSGT00950000183189.a.b.a #22	ENSGT00940000154384.h.a ##23	ENSGT00940000160614 #25	ENSGT00910000147968	ENSGT00910000146924	ENSGT00940000156162.C.k #27	ENSGT00940000154552.b.g.a #28	ENSGT00940000156941 #29	ENSGT00940000164015	ENSGT00940000159676 #31	ENSGT00940000161734 #32	ENSGT00940000154345.b	ENSGT00940000154345.a	ENSGT00940000156789	ENSGT00910000147139	ENSGT00910000147149
Cercopithecinae_b	ANCESTRAL SPECIES		ENSGT00530000063564.b.e.b	ENSGT00940000156335.o #8	ENSGT00390000013727.d #9	ENSGT00910000147799	ENSGT01000000214413.b.a.a #10	ENSGT00940000154863.db.d	ENSGT00940000156305 #11	ENSGT00390000002837.m #12	ENSGT00390000009980 #14	ENSGT00940000157401 #15	ENSGT00910000147128	ENSGT00940000155931 #16	ENSGT00390000013701 #18	ENSGT00390000015010 #20	ENSGT00940000154942.h.q.b	ENSGT00950000183189.a.b.a #22	ENSGT00940000154384.h.a ##23	ENSGT00940000160614 #25	ENSGT00910000147968	ENSGT00910000146924	ENSGT00940000156162.C.k #27	ENSGT00940000154552.b.g.a #28	ENSGT00940000156941 #29	ENSGT00940000164015	ENSGT00940000159676 #31	ENSGT00940000161734 #32	ENSGT00940000154345.b	ENSGT00940000154345.a	ENSGT00940000156789	ENSGT00910000147139	ENSGT00910000147149
Cercopithecinae_d	ANCESTRAL SPECIES	52													ENSGT00390000013701 #18	ENSGT00390000015010 #20	ENSGT00940000154942.h.q.b	ENSGT00950000183189.a.b.a #22	ENSGT00940000154384.h.a ##23	ENSGT00940000160614 #25	ENSGT00910000147968	ENSGT00910000146924	ENSGT00940000156162.C.k #27	ENSGT00940000154552.b.g.a #28	ENSGT00940000156941 #29	ENSGT00940000164015	ENSGT00940000159676 #31	ENSGT00940000161734 #32	ENSGT00940000154345.b	ENSGT00940000154345.a	ENSGT00940000156789	ENSGT00910000147139	ENSGT00910000147149
Sooty mangabey	MODERN SPECIES	292													TTC14 (ENSCATG00000031048) #18	CCDC39 (ENSCATG00000039842) #20	ENSCATG00000032808	FXR1 (ENSCATG00000040925) #22	DNAJC19 (ENSCATG00000035477) ##23	SOX2 (ENSCATG00000016562) #25	ENSCATG00000016756	ENSCATG00000035017	ATP11B (ENSCATG00000038132) #27	DCUN1D1 (ENSCATG00000036712) #28	MCCC1 (ENSCATG00000037699) #29	LAMP3 (ENSCATG00000044257)	MCF2L2 (ENSCATG00000012769) #32	B3GNT5 (ENSCATG00000023620) #31
Drill	MODERN SPECIES	1598													TTC14 (ENSMLEG00000000458) #18	CCDC39 (ENSMLEG00000033624) #20	ENSMLEG00000040737	FXR1 (ENSMLEG00000041270) #22	DNAJC19 (ENSMLEG00000040727) ##23
Olive baboon	MODERN SPECIES	11	MFN1 (ENSPANG00000018156) #9	GNB4 (ENSPANG00000018882) #10	ENSPANG00000010712	ENSPANG00000048993	ACTL6A (ENSPANG00000024431) #11	ENSPANG00000008191 #12	NDUFB5 (ENSPANG00000008899) #14	USP13 (ENSPANG00000008384) #15	PEX5L (ENSPANG00000011898) #16	ENSPANG00000037628	TTC14 (ENSPANG00000011012) #18	CCDC39 (ENSPANG00000018158) #20	ENSPANG00000031815	ENSPANG00000042364	ENSPANG00000042486	FXR1 (ENSPANG00000011899) #22	DNAJC19 (ENSPANG00000034438) ##23	ENSPANG00000040162	ENSPANG00000044238	ENSPANG00000047546	ENSPANG00000051099	ENSPANG00000034153	ATP11B (ENSPANG00000015886) #27	DCUN1D1 (ENSPANG00000008386) #28	MCCC1 (ENSPANG00000006870) #29	LAMP3 (ENSPANG00000008975)	B3GNT5 (ENSPANG00000005729) #31	MCF2L2 (ENSPANG00000017801) #32	KLHL6 (ENSPANG00000010027)	KLHL24 (ENSPANG00000031538)	YEATS2 (ENSPANG00000025622)
Macaca	ANCESTRAL SPECIES	5	ENSGT00390000013727.d #9	ENSGT00910000147799	ENSGT01000000214413.b.a.a #10	ENSGT00940000154863.db.d	ENSGT00940000156000.o.b	ENSGT00940000156305 #11	ENSGT00390000002837.m #12	ENSGT00390000009980 #14	ENSGT00940000157401 #15	ENSGT00910000147128	ENSGT00940000155931 #16	ENSGT00940000154639.n.a	ENSGT00390000013701 #18	ENSGT00390000015010 #20	ENSGT00940000154942.h.q.b	ENSGT00950000183189.a.b.a #22	ENSGT00940000154384.h.a ##23	ENSGT00940000160614 #25	ENSGT00910000147968	ENSGT00910000146924	ENSGT00940000156162.C.k #27	ENSGT00940000154552.b.g.a #28	ENSGT00940000156941 #29	ENSGT00940000164015	ENSGT00940000161734 #32	ENSGT00940000159676 #31	ENSGT00940000154345.b	ENSGT00940000154345.a	ENSGT00940000156789	ENSGT00910000147139	ENSGT00910000147149
Pig-tailed macaque	MODERN SPECIES	563													TTC14 (ENSMNEG00000044800) #18	CCDC39 (ENSMNEG00000033311) #20	ENSMNEG00000041132	FXR1 (ENSMNEG00000031733) #22	DNAJC19 (ENSMNEG00000037111) ##23	SOX2 (ENSMNEG00000026232) #25	ENSMNEG00000023089	ENSMNEG00000031959	ENSMNEG00000041253	ATP11B (ENSMNEG00000044870) #27	DCUN1D1 (ENSMNEG00000034646) #28	MCCC1 (ENSMNEG00000017163) #29	LAMP3 (ENSMNEG00000039831)	ENSMNEG00000023945 ##26	MCF2L2 (ENSMNEG00000028315) #32	B3GNT5 (ENSMNEG00000027097) #31	KLHL6 (ENSMNEG00000022023)	KLHL24 (ENSMNEG00000039455)	YEATS2 (ENSMNEG00000042931)
Macaca_a	ANCESTRAL SPECIES	5	ENSGT00940000155531.b	ENSGT00950000183039.B.a #7	ENSGT00940000156335.o #8	ENSGT00390000013727.d #9	ENSGT01000000214413.b.a.a #10	ENSGT00940000156000.o.b	ENSGT00940000156305 #11	ENSGT00390000002837.m #12	ENSGT00390000009980 #14	ENSGT00940000157401 #15	ENSGT00940000155931 #16	ENSGT01100000263509.a.a.b.b.a.b.a.a.a.a	ENSGT00390000013701 #18	ENSGT00390000015010 #20	ENSGT00940000154942.h.q.b	ENSGT00950000183189.a.b.a #22	ENSGT00940000154384.h.a ##23	ENSGT00940000160614 #25	ENSGT00910000146924	ENSGT00940000156162.C.k #27	ENSGT00940000154552.b.g.a #28	ENSGT00940000156941 #29	ENSGT00940000164015	ENSGT00940000161734 #32	ENSGT00940000159676 #31	ENSGT00940000154345.b	ENSGT00940000156789	ENSGT00530000063947.B	ENSGT00390000013063	ENSGT00940000155470.b	ENSGT00940000156739.b.b.a
Crab-eating macaque	MODERN SPECIES	11	ZNF639 (ENSMFAG00000002403) #8	MFN1 (ENSMFAG00000003857) #9	GNB4 (ENSMFAG00000041470) #10	ENSMFAG00000030517	ENSMFAG00000065242	ENSMFAG00000054257	ACTL6A (ENSMFAG00000030153) #11	ENSMFAG00000053669 #12	NDUFB5 (ENSMFAG00000042220) #14	USP13 (ENSMFAG00000042834) #15	ENSMFAG00000061892	PEX5L (ENSMFAG00000036976) #16	ENSMFAG00000053927	TTC14 (ENSMFAG00000046249) #18	CCDC39 (ENSMFAG00000002267) #20	FXR1 (ENSMFAG00000040264) #22	DNAJC19 (ENSMFAG00000034041) ##23	ENSMFAG00000058781	SOX2 (ENSMFAG00000027781) #25	ENSMFAG00000003633	ATP11B (ENSMFAG00000035388) #27	MCCC1 (ENSMFAG00000000043) #29	LAMP3 (ENSMFAG00000042658)	ENSMFAG00000050998	MCF2L2 (ENSMFAG00000036484) #32	B3GNT5 (ENSMFAG00000011168) #31	ENSMFAG00000035316	YEATS2 (ENSMFAG00000045323)	MAP6D1 (ENSMFAG00000064027)	PARL (ENSMFAG00000036652)	ABCC5 (ENSMFAG00000038091)
Rhesus	MODERN SPECIES	11	KCNMB3 (ENSMMUG00000005187) #7	ZNF639 (ENSMMUG00000023078) #8	MFN1 (ENSMMUG00000004079) #9	GNB4 (ENSMMUG00000004083) #10	ENSMMUG00000054028	ACTL6A (ENSMMUG00000009742) #11	MRPL47 (ENSMMUG00000009744) #12	NDUFB5 (ENSMMUG00000009746) #14	USP13 (ENSMMUG00000003594) #15	PEX5L (ENSMMUG00000003595) #16	ENSMMUG00000050512	ENSMMUG00000049713	TTC14 (ENSMMUG00000019656) #18	CCDC39 (ENSMMUG00000045200) #20	ENSMMUG00000013353	FXR1 (ENSMMUG00000012105) #22	DNAJC19 (ENSMMUG00000012104) ##23	ENSMMUG00000063235	ENSMMUG00000057005	ENSMMUG00000047232	ENSMMUG00000018530	ATP11B (ENSMMUG00000019323) #27	DCUN1D1 (ENSMMUG00000010552) #28	MCCC1 (ENSMMUG00000010553) #29	LAMP3 (ENSMMUG00000010555)	ENSMMUG00000053420	MCF2L2 (ENSMMUG00000001456) #32	B3GNT5 (ENSMMUG00000031605) #31	KLHL6 (ENSMMUG00000022115)	YEATS2 (ENSMMUG00000008070)	ENSMMUG00000064298
Vervet Monkey	MODERN SPECIES	6	KCNMB2 (ENSCSAG00000012931) ##7	ZMAT3 (ENSCSAG00000012935)	PIK3CA (ENSCSAG00000012948)	KCNMB3 (ENSCSAG00000012962) #7	ZNF639 (ENSCSAG00000012977) #8	MFN1 (ENSCSAG00000012988) #9	GNB4 (ENSCSAG00000012993) #10	ACTL6A (ENSCSAG00000013017) #11	ENSCSAG00000013046 #12	NDUFB5 (ENSCSAG00000013080) #14	USP13 (ENSCSAG00000013094) #15	PEX5L (ENSCSAG00000013101) #16	TTC14 (ENSCSAG00000013105) #18	CCDC39 (ENSCSAG00000013137) #20	ENSCSAG00000013166	FXR1 (ENSCSAG00000013179) #22	DNAJC19 (ENSCSAG00000013183) ##23	SOX2 (ENSCSAG00000018883) #25	ATP11B (ENSCSAG00000013201) #27	DCUN1D1 (ENSCSAG00000013212) #28	MCCC1 (ENSCSAG00000013226) #29	ENSCSAG00000013232 #30	B3GNT5 (ENSCSAG00000018882) #31	MCF2L2 (ENSCSAG00000013245) #32	KLHL6 (ENSCSAG00000013258)	KLHL24 (ENSCSAG00000013266)	YEATS2 (ENSCSAG00000013383)	MAP6D1 (ENSCSAG00000013437)	PARL (ENSCSAG00000013473)	ABCC5 (ENSCSAG00000013503)	HTR3D (ENSCSAG00000013515)
Hominoidea	ANCESTRAL SPECIES	2	ENSGT00950000183039.B.a #7	ENSGT00530000063564.b.e.b	ENSGT00940000156335 #8	ENSGT00390000013727.d #9	ENSGT01000000214413.b.a.a #10	ENSGT00940000154863.db.d	ENSGT00940000156305 #11	ENSGT00390000002837 #12	ENSGT00390000009980 #14	ENSGT00940000157401 #15	ENSGT00940000155931 #16	ENSGT00940000154639.n.a	ENSGT00390000013701 #18	ENSGT00390000015010 #20	ENSGT00940000154942.h.q.b	ENSGT00950000183189.a.b.a #22	ENSGT00940000154384.h.a ##23	ENSGT00940000160614 #25	ENSGT00910000146924	ENSGT00940000156162.C.k #27	ENSGT00940000154552.b.g.a #28	ENSGT00940000156941 #29	ENSGT00940000164015	ENSGT00940000159676 #31	ENSGT00940000161734 #32	ENSGT00940000154345.b	ENSGT00940000154345.a	ENSGT00940000156789	ENSGT00910000147149	ENSGT00530000063947.B	ENSGT00390000013063
Hominidae	ANCESTRAL SPECIES	2	ENSGT00910000147422	ENSGT00950000183039.B.a #7	ENSGT00530000063564.b.e.b	ENSGT00940000156335 #8	ENSGT00390000013727.d #9	ENSGT01000000214413.b.a.a #10	ENSGT00940000154863.db.d	ENSGT00940000156305 #11	ENSGT00390000002837 #12	ENSGT00390000009980 #14	ENSGT00940000157401 #15	ENSGT00940000155931 #16	ENSGT00940000154639.n.a	ENSGT00390000013701 #18	ENSGT00390000015010 #20	ENSGT00950000183189.a.b.a #22	ENSGT00940000154384.h.a ##23	ENSGT00940000160614 #25	ENSGT00910000146924	ENSGT00940000156162.C.k #27	ENSGT00940000154552.b.g.a #28	ENSGT00940000156941 #29	ENSGT00940000164015	ENSGT00940000159676 #31	ENSGT00940000161734 #32	ENSGT00940000154345.b	ENSGT00940000154345.a	ENSGT00940000156789	ENSGT00910000147149	ENSGT00530000063947.B	ENSGT00390000013063
Homo/Pan/Gorilla group	ANCESTRAL SPECIES	2	ENSGT00530000063564.b.e.b	ENSGT00940000156335 #8	ENSGT00390000013727.d #9	ENSGT01000000214413.b.a.a #10	ENSGT00940000154863.db.d	ENSGT00940000156305 #11	ENSGT00390000002837 #12	ENSGT00390000009980 #14	ENSGT00940000157401 #15	ENSGT00940000155931 #16	ENSGT00940000154639.n.a	ENSGT00390000013701 #18	ENSGT00390000015010 #20	ENSGT00940000154942.h.q.b	ENSGT00940000158890.q	ENSGT00950000183189.a.b.a #22	ENSGT00940000154384.h.a ##23	ENSGT00940000160614 #25	ENSGT00940000156162.C.k #27	ENSGT00940000154552.b.g.a #28	ENSGT00940000156941 #29	ENSGT00940000164015	ENSGT00940000159676 #31	ENSGT00940000161734 #32	ENSGT00940000154345.b	ENSGT00940000154345.a	ENSGT00940000156789	ENSGT00910000147149	ENSGT00530000063947.B	ENSGT00390000013063	ENSGT00940000163497
Homo/Pan group	ANCESTRAL SPECIES	3	ENSGT00530000063564.b.e.b	ENSGT00940000156335 #8	ENSGT00390000013727.d #9	ENSGT01000000214413.b.a.a #10	ENSGT00940000154863.db.d	ENSGT00940000156305 #11	ENSGT00390000002837 #12	ENSGT00390000009980 #14	ENSGT00940000157401 #15	ENSGT00940000155931 #16	ENSGT00940000154639.n.a	ENSGT00390000013701 #18	ENSGT00390000015010 #20	ENSGT00940000154942.h.q.b	ENSGT00940000158890.q	ENSGT00950000183189.a.b.a #22	ENSGT00940000154384.h.a ##23	ENSGT00940000160614 #25	ENSGT00940000156162.C.k #27	ENSGT00940000154552.b.g.a #28	ENSGT00940000156941 #29	ENSGT00940000164015	ENSGT00940000159676 #31	ENSGT00940000161734 #32	ENSGT00940000154345.b	ENSGT00940000154345.a	ENSGT00940000156789	ENSGT00530000063947.B	ENSGT00390000013063	ENSGT00940000163497	ENSGT00940000155470.b
Pan	ANCESTRAL SPECIES	2	ENSGT00530000063564.b.e.b	ENSGT00940000156335 #8	ENSGT00390000013727.d #9	ENSGT01000000214413.b.a.a #10	ENSGT00940000154863.db.d	ENSGT00940000156305 #11	ENSGT00390000002837 #12	ENSGT00390000009980 #14	ENSGT00940000157401 #15	ENSGT00940000155931 #16	ENSGT00940000154639.n.a	ENSGT00390000013701 #18	ENSGT00390000015010 #20	ENSGT00940000154942.h.q.b	ENSGT00940000158890.q	ENSGT00950000183189.a.b.a #22	ENSGT00940000154384.h.a ##23	ENSGT00910000147572	ENSGT00940000160614 #25	ENSGT00910000146924	ENSGT00940000156162.C.k #27	ENSGT00940000154552.b.g.a #28	ENSGT00940000156941 #29	ENSGT00940000164015	ENSGT00940000159676 #31	ENSGT00940000161734 #32	ENSGT00940000154345.b	ENSGT00940000154345.a	ENSGT00940000156789	ENSGT00530000063947.B	ENSGT00390000013063
Chimpanzee	MODERN SPECIES	16	ENSPTRG00000051036	ZNF639 (ENSPTRG00000015644) #8	MFN1 (ENSPTRG00000015645) #9	GNB4 (ENSPTRG00000015646) #10	ENSPTRG00000050962	ACTL6A (ENSPTRG00000023973) #11	MRPL47 (ENSPTRG00000015648) #12	NDUFB5 (ENSPTRG00000015649) #14	USP13 (ENSPTRG00000015650) #15	PEX5L (ENSPTRG00000015651) #16	ENSPTRG00000049028	TTC14 (ENSPTRG00000015652) #18	CCDC39 (ENSPTRG00000015653) #20	ENSPTRG00000052129	ENSPTRG00000045151	ENSPTRG00000015656 #22	DNAJC19 (ENSPTRG00000030046) ##23	ENSPTRG00000047311	SOX2 (ENSPTRG00000030045) #25	ENSPTRG00000050568	ENSPTRG00000047631	ATP11B (ENSPTRG00000015660) #27	DCUN1D1 (ENSPTRG00000015661) #28	MCCC1 (ENSPTRG00000015662) #29	LAMP3 (ENSPTRG00000015663)	MCF2L2 (ENSPTRG00000015665) #32	B3GNT5 (ENSPTRG00000015666) #31	KLHL6 (ENSPTRG00000015667)	KLHL24 (ENSPTRG00000015669)	YEATS2 (ENSPTRG00000015670)	MAP6D1 (ENSPTRG00000015672)
Bonobo	MODERN SPECIES	16	ENSPPAG00000040290	ZNF639 (ENSPPAG00000031214) #8	MFN1 (ENSPPAG00000043805) #9	GNB4 (ENSPPAG00000043825) #10	ENSPPAG00000031844	ACTL6A (ENSPPAG00000031814) #11	MRPL47 (ENSPPAG00000028033) #12	NDUFB5 (ENSPPAG00000032519) #14	USP13 (ENSPPAG00000001256) #15	PEX5L (ENSPPAG00000036179) #16	ENSPPAG00000001167	TTC14 (ENSPPAG00000040361) #18	CCDC39 (ENSPPAG00000027438) #20	ENSPPAG00000015512	ENSPPAG00000043783	ENSPPAG00000037630 #22	DNAJC19 (ENSPPAG00000019978) ##23	ENSPPAG00000027884	SOX2 (ENSPPAG00000041083) #25	ENSPPAG00000036037	ENSPPAG00000039113	ATP11B (ENSPPAG00000039428) #27	DCUN1D1 (ENSPPAG00000029981) #28	MCCC1 (ENSPPAG00000036167) #29	LAMP3 (ENSPPAG00000027592)	MCF2L2 (ENSPPAG00000032914) #32	B3GNT5 (ENSPPAG00000000714) #31	KLHL6 (ENSPPAG00000028141)	KLHL24 (ENSPPAG00000034331)	YEATS2 (ENSPPAG00000015640)	PARL (ENSPPAG00000037739)
Human	MODERN SPECIES	15	KCNMB2 (ENSG00000197584) ##7	ENSG00000275163	ZMAT3 (ENSG00000172667)	PIK3CA (ENSG00000121879)	KCNMB3 (ENSG00000171121) #7	ZNF639 (ENSG00000121864) #8	MFN1 (ENSG00000171109) #9	GNB4 (ENSG00000114450) #10	ACTL6A (ENSG00000136518) #11	MRPL47 (ENSG00000136522) #12	NDUFB5 (ENSG00000136521) #14	USP13 (ENSG00000058056) #15	PEX5L (ENSG00000114757) #16	TTC14 (ENSG00000163728) #18	CCDC39 (ENSG00000284862) #20	FXR1 (ENSG00000114416) #22	DNAJC19 (ENSG00000205981) ##23	SOX2 (ENSG00000181449) #25	ATP11B (ENSG00000058063) #27	DCUN1D1 (ENSG00000043093) #28	MCCC1 (ENSG00000078070) #29	LAMP3 (ENSG00000078081)	MCF2L2 (ENSG00000053524) #32	B3GNT5 (ENSG00000176597) #31	KLHL6 (ENSG00000172578)	KLHL24 (ENSG00000114796)	YEATS2 (ENSG00000163872)	ENSG00000283765	MAP6D1 (ENSG00000180834)	PARL (ENSG00000175193)	ABCC5 (ENSG00000114770)
Gorilla	MODERN SPECIES	16	ENSGGOG00000041059	ZNF639 (ENSGGOG00000025664) #8	MFN1 (ENSGGOG00000009357) #9	GNB4 (ENSGGOG00000026248) #10	ENSGGOG00000002247	ACTL6A (ENSGGOG00000015710) #11	MRPL47 (ENSGGOG00000027171) #12	NDUFB5 (ENSGGOG00000005222) #14	USP13 (ENSGGOG00000034809) #15	PEX5L (ENSGGOG00000003000) #16	ENSGGOG00000043452	TTC14 (ENSGGOG00000003335) #18	CCDC39 (ENSGGOG00000034953) #20	ENSGGOG00000041279	ENSGGOG00000025632	ENSGGOG00000009957 #22	DNAJC19 (ENSGGOG00000009120) ##23	ENSGGOG00000040038	ENSGGOG00000013813	ENSGGOG00000037039	ENSGGOG00000022832	ATP11B (ENSGGOG00000023125) #27	DCUN1D1 (ENSGGOG00000010767) #28	MCCC1 (ENSGGOG00000002784) #29	LAMP3 (ENSGGOG00000005729)	MCF2L2 (ENSGGOG00000005734) #32	B3GNT5 (ENSGGOG00000038086) #31	KLHL6 (ENSGGOG00000010394)	KLHL24 (ENSGGOG00000028174)	YEATS2 (ENSGGOG00000003713)	ENSGGOG00000044009
Orangutan	MODERN SPECIES	16	ENSPPYG00000014315	PIK3CA (ENSPPYG00000025901)	ENSPPYG00000034294	KCNMB3 (ENSPPYG00000014316) #7	ZNF639 (ENSPPYG00000031916) #8	MFN1 (ENSPPYG00000014318) #9	GNB4 (ENSPPYG00000040073) #10	ENSPPYG00000040586	ACTL6A (ENSPPYG00000014320) #11	MRPL47 (ENSPPYG00000014321) #12	NDUFB5 (ENSPPYG00000037815) #14	USP13 (ENSPPYG00000014322) #15	PEX5L (ENSPPYG00000014323) #16	ENSPPYG00000014324 #18	CCDC39 (ENSPPYG00000014325) #20	FXR1 (ENSPPYG00000014327) #22	DNAJC19 (ENSPPYG00000014328) ##23	SOX2 (ENSPPYG00000014330) #25	ENSPPYG00000031318	ATP11B (ENSPPYG00000029655) #27	ENSPPYG00000029837 #28	MCCC1 (ENSPPYG00000014331) #29	LAMP3 (ENSPPYG00000014332)	MCF2L2 (ENSPPYG00000014333) #32	B3GNT5 (ENSPPYG00000032259) #31	KLHL6 (ENSPPYG00000029418)	KLHL24 (ENSPPYG00000014335)	YEATS2 (ENSPPYG00000014336)	MAP6D1 (ENSPPYG00000035906)	PARL (ENSPPYG00000014338)	ABCC5 (ENSPPYG00000014339)
Gibbon	DUPLICATION
Gibbon	MODERN SPECIES	1	ENSNLEG00000005735 #7	ENSNLEG00000031548	ZNF639 (ENSNLEG00000005744) #8	MFN1 (ENSNLEG00000005745) #9	GNB4 (ENSNLEG00000005751) #10	ENSNLEG00000035220	ACTL6A (ENSNLEG00000035913) #11	MRPL47 (ENSNLEG00000005831) #12	NDUFB5 (ENSNLEG00000034646) #14	USP13 (ENSNLEG00000005851) #15	PEX5L (ENSNLEG00000005874) #16	ENSNLEG00000030368	TTC14 (ENSNLEG00000005900) #18	CCDC39 (ENSNLEG00000005916) #20	ENSNLEG00000033880	FXR1 (ENSNLEG00000005928) #22	DNAJC19 (ENSNLEG00000033702) ##23	SOX2 (ENSNLEG00000018940) #25	ENSNLEG00000032218	ENSNLEG00000030225	ENSNLEG00000032897	ATP11B (ENSNLEG00000005959) #27	DCUN1D1 (ENSNLEG00000005983) #28	MCCC1 (ENSNLEG00000005989) #29	LAMP3 (ENSNLEG00000006034)	MCF2L2 (ENSNLEG00000006037) #32	B3GNT5 (ENSNLEG00000018942) #31	ENSNLEG00000006063	KLHL24 (ENSNLEG00000006066)	YEATS2 (ENSNLEG00000006070)	ENSNLEG00000034670
Gibbon	MODERN SPECIES	1	SLC38A2 (ENSNLEG00000017915)	SLC38A1 (ENSNLEG00000029941)	SCAF11 (ENSNLEG00000017918)	ARID2 (ENSNLEG00000017919)	ANO6 (ENSNLEG00000017920)	DBX2 (ENSNLEG00000017924)	NELL2 (ENSNLEG00000017926)	ENSNLEG00000031581	TMEM117 (ENSNLEG00000017929)	TWF1 (ENSNLEG00000017931)	IRAK4 (ENSNLEG00000017933)	PUS7L (ENSNLEG00000017934)	ADAMTS20 (ENSNLEG00000017936)	ENSNLEG00000028656	PRICKLE1 (ENSNLEG00000017938)	ENSNLEG00000031391 #22	ZCRB1 (ENSNLEG00000017944)	ENSNLEG00000027269	ENSNLEG00000017941	YAF2 (ENSNLEG00000017946)	GXYLT1 (ENSNLEG00000028842)	PDZRN4 (ENSNLEG00000017948)	CNTN1 (ENSNLEG00000017950)	LRRK2 (ENSNLEG00000017957)	SLC2A13 (ENSNLEG00000017960)	C12orf40 (ENSNLEG00000017961)	ABCD2 (ENSNLEG00000017963)	KIF21A (ENSNLEG00000017964)	CPNE8 (ENSNLEG00000030228)	ENSNLEG00000032571	ENSNLEG00000033997