Euarchontoglires_A	ANCESTRAL SPECIES	2	ENSGT00950000182895.a.b.j ##7	ENSGT00390000004977 #8	ENSGT01090000259987.a.a.a #9	ENSGT00390000015709 #10	ENSGT00940000155992 #11	ENSGT00390000007989 #12	ENSGT00940000158212.B #13	ENSGT00950000183022.b #14	ENSGT00940000162185 #15	ENSGT00940000162889 #16	ENSGT00940000155682 #17	ENSGT00390000005581.a #18	ENSGT00520000055666.b #19	ENSGT00390000011570 #20	ENSGT00940000156322 #21	ENSGT00950000183170.b.b #22	ENSGT00390000011514 #23	ENSGT00960000191699	ENSGT00730000110871.a.a.a.b #24	ENSGT00950000182997.a.b.b.a #25	ENSGT00940000161997.a #26	ENSGT00940000160683 #27	ENSGT00940000154486.b.a.a.b
Glires	ANCESTRAL SPECIES	2	ENSGT00950000182895.a.b.j ##7	ENSGT00390000004977 #8	ENSGT01090000259987.a.a.a #9	ENSGT00390000015709 #10	ENSGT00940000155992 #11	ENSGT00390000007989 #12	ENSGT00940000158212.B #13	ENSGT00950000183022.b #14	ENSGT00940000162185 #15	ENSGT00940000162889 #16	ENSGT00940000155682 #17	ENSGT00390000005581.a #18	ENSGT00520000055666.b #19	ENSGT00390000011570 #20	ENSGT00940000156322 #21	ENSGT00950000183170.b.b #22	ENSGT00390000011514 #23	ENSGT00960000191699	ENSGT00730000110871.a.a.a.b #24	ENSGT00950000182997.a.b.b.a #25	ENSGT00940000161997.a #26	ENSGT00940000160683 #27	ENSGT00940000154486.b.a.a.b
Rodentia	ANCESTRAL SPECIES	2	ENSGT00950000182895.a.b.j ##7	ENSGT00390000004977 #8	ENSGT01090000259987.a.a.a #9	ENSGT00390000015709 #10	ENSGT00940000155992 #11	ENSGT00390000007989 #12	ENSGT00940000158212.B #13	ENSGT00950000183022.b #14	ENSGT00940000162185 #15	ENSGT00940000162889 #16	ENSGT00940000155682 #17	ENSGT00390000005581.a #18	ENSGT00520000055666.b #19	ENSGT00390000011570 #20	ENSGT00940000156322 #21	ENSGT00950000183170.b.b #22	ENSGT00390000011514 #23	ENSGT00960000191699	ENSGT00730000110871.a.a.a.b #24	ENSGT00950000182997.a.b.b.a #25	ENSGT00940000161997.a #26	ENSGT00940000160683 #27
Rodentia_A	ANCESTRAL SPECIES	5	ENSGT00950000182895.a.b.j ##7	ENSGT00390000004977 #8	ENSGT01090000259987.a.a.a #9	ENSGT00390000015709 #10	ENSGT00940000155992 #11	ENSGT00390000007989 #12	ENSGT00940000158212.B #13	ENSGT00950000183022.b #14	ENSGT00940000162185 #15	ENSGT00940000162889 #16	ENSGT00940000155682 #17	ENSGT00390000005581.a #18	ENSGT00520000055666.b #19	ENSGT00390000011570 #20	ENSGT00940000156322 #21	ENSGT00950000183170.b.b #22	ENSGT00390000011514 #23	ENSGT00730000110871.a.a.a.b #24	ENSGT00950000182997.a.b.b.a #25	ENSGT00940000161997.a #26	ENSGT00940000160683 #27
Hystricomorpha	ANCESTRAL SPECIES	60	ENSGT00950000182895.a.b.j ##7	ENSGT00390000004977 #8	ENSGT01090000259987.a.a.a #9	ENSGT00390000015709 #10	ENSGT00940000155992 #11	ENSGT00390000007989 #12	ENSGT00940000158212.B #13	ENSGT00950000183022.b #14	ENSGT00940000162185 #15	ENSGT00940000162889 #16	ENSGT00940000155682 #17	ENSGT00390000005581.a #18	ENSGT00520000055666.b #19	ENSGT00390000011570 #20	ENSGT00940000156322 #21	ENSGT00950000183170.b.b #22	ENSGT00390000011514 #23	ENSGT00730000110871.a.a.a.b #24	ENSGT00950000182997.a.b.b.a #25	ENSGT00940000161997.a #26	ENSGT00940000160683 #27
Hystricomorpha_a	ANCESTRAL SPECIES	37	ENSGT00950000182895.a.b.j ##7	ENSGT00390000004977 #8	ENSGT01090000259987.a.a.a #9	ENSGT00390000015709 #10	ENSGT00940000155992 #11	ENSGT00390000007989 #12	ENSGT00940000158212.B #13	ENSGT00950000183022.b #14	ENSGT00940000162185 #15	ENSGT00940000162889 #16	ENSGT00940000155682 #17	ENSGT00390000005581.a #18	ENSGT00520000055666.b #19	ENSGT00390000011570 #20	ENSGT00940000156322 #21	ENSGT00950000183170.b.b #22	ENSGT00390000011514 #23	ENSGT00730000110871.a.a.a.b #24	ENSGT00950000182997.a.b.b.a #25	ENSGT00940000161997.a #26	ENSGT00940000160683 #27
Hystricomorpha_b	ANCESTRAL SPECIES	34	ENSGT00950000182895.a.a.a.b.f ##7	ENSGT00390000004977 #8	ENSGT01090000259987.a.a.a #9	ENSGT00390000015709 #10	ENSGT00940000155992 #11	ENSGT00390000007989 #12	ENSGT00940000158212.B #13	ENSGT00950000183022.b #14	ENSGT00940000162185 #15	ENSGT00940000162889 #16	ENSGT00940000155682 #17	ENSGT00390000005581.a #18	ENSGT00520000055666.b #19	ENSGT00390000011570 #20	ENSGT00940000156322 #21	ENSGT00950000183170.b.b #22	ENSGT00390000011514 #23	ENSGT00730000110871.a.a.a.b #24	ENSGT00950000182997.a.b.b.a #25	ENSGT00940000161997.a #26	ENSGT00940000160683 #27
Long-tailed chinchilla	MODERN SPECIES	114	ENSCLAG00000006914 #7	PTTG1IP (ENSCLAG00000008686) #8	ITGB2 (ENSCLAG00000011530) #9	SLX9 (ENSCLAG00000015540) #10	ADARB1 (ENSCLAG00000010595) #11	POFUT2 (ENSCLAG00000014869) #12	COL18A1 (ENSCLAG00000009590) #13	SLC19A1 (ENSCLAG00000005746) #14	PCBP3 (ENSCLAG00000006667) #15	COL6A1 (ENSCLAG00000004686) #16	COL6A2 (ENSCLAG00000009215) #17	FTCD (ENSCLAG00000014029) #18	SPATC1L (ENSCLAG00000016436) #19	LSS (ENSCLAG00000011987) #20	MCM3AP (ENSCLAG00000013358) #21	YBEY (ENSCLAG00000006892) #22	ENSCLAG00000007820 #23	PCNT (ENSCLAG00000012697) #24	DIP2A (ENSCLAG00000013614) #25	S100B (ENSCLAG00000009038) #26	PRMT2 (ENSCLAG00000006778) #27
Degu	MODERN SPECIES	86	ENSODEG00000013838 ##7	PTTG1IP (ENSODEG00000013537) #8	ITGB2 (ENSODEG00000013569) #9	ADARB1 (ENSODEG00000014508) #11	POFUT2 (ENSODEG00000013451) #12	ENSODEG00000020203	ENSODEG00000013398	PCBP3 (ENSODEG00000012873) #15	ENSODEG00000013981	ENSODEG00000020105	COL6A2 (ENSODEG00000013531) #17	FTCD (ENSODEG00000013308) #18	SPATC1L (ENSODEG00000013418) #19	LSS (ENSODEG00000014728) #20	MCM3AP (ENSODEG00000013662) #21	YBEY (ENSODEG00000014950) #22	DIP2A (ENSODEG00000013484) #25	PRMT2 (ENSODEG00000013920) #27	IGFBPL1 (ENSODEG00000013895)	ALDH1B1 (ENSODEG00000014240)	SHB (ENSODEG00000013286)	ENSODEG00000020274	DCAF10 (ENSODEG00000015520)	ENSODEG00000014904	FRMPD1 (ENSODEG00000016482)	FBXO10 (ENSODEG00000013432)	POLR1E (ENSODEG00000014565)	ZBTB5 (ENSODEG00000013905)	ENSODEG00000014628	PAX5 (ENSODEG00000014314)	MELK (ENSODEG00000015169)
Guinea pig	MODERN SPECIES	110						POFUT2 (ENSCPOG00000009385) #12	COL18A1 (ENSCPOG00000020725) #13	SLC19A1 (ENSCPOG00000023229) #14	PCBP3 (ENSCPOG00000003648) #15	ENSCPOG00000030777	COL6A2 (ENSCPOG00000021819) #17	FTCD (ENSCPOG00000026874) #18	SPATC1L (ENSCPOG00000008358) #19	LSS (ENSCPOG00000013859) #20	MCM3AP (ENSCPOG00000002407) #21	YBEY (ENSCPOG00000002415) #22	ENSCPOG00000010788 #23	PCNT (ENSCPOG00000015488) #24	DIP2A (ENSCPOG00000003803) #25	S100B (ENSCPOG00000037925) #26	PRMT2 (ENSCPOG00000019877) #27	ENSCPOG00000024671
Naked mole-rat female	MODERN SPECIES	30	ENSHGLG00000041314	MIXL1 (ENSHGLG00000045669)	LIN9 (ENSHGLG00000007823)	Parp1 (ENSHGLG00000003992)	ENSHGLG00000035038	PLAG1 (ENSHGLG00000001672)	MOS (ENSHGLG00000049453)	ENSHGLG00000033196	LYN (ENSHGLG00000002926)	ENSHGLG00000000284	ENSHGLG00000000295	ENSHGLG00000000769	TBPL2 (ENSHGLG00000001017)	ENSHGLG00000001414	ENSHGLG00000049393	ENSHGLG00000016069 #22	ENSHGLG00000017345 #23	PCNT (ENSHGLG00000015807) #24	DIP2A (ENSHGLG00000014043) #25	ENSHGLG00000013120 #26	ENSHGLG00000015854 #27	ENSHGLG00000032905	ENSHGLG00000047983	ENSHGLG00000051009	ENSHGLG00000042568	ENSHGLG00000012384	ENSHGLG00000050008	RPP38 (ENSHGLG00000012144)	ENSHGLG00000011997	ENSHGLG00000038242	ENSHGLG00000039803
Sciuridae	ANCESTRAL SPECIES	12	ENSGT00950000182895.a.b.j ##7	ENSGT00390000004977 #8	ENSGT01090000259987.a.a.a #9	ENSGT00390000015709 #10	ENSGT00940000155992 #11	ENSGT00390000007989.h #12	ENSGT00940000158212.B #13	ENSGT00950000183022.b #14	ENSGT00940000162185 #15	ENSGT00940000162889 #16	ENSGT00940000155682 #17	ENSGT00390000005581.a #18	ENSGT00520000055666.b #19	ENSGT00390000011570 #20	ENSGT00940000156322 #21	ENSGT00950000183170.b.b #22	ENSGT00390000011514 #23	ENSGT00730000110871.a.a.a.b #24	ENSGT00950000182997.a.b.b.a #25	ENSGT00940000161997.a #26	ENSGT00940000160683 #27
Marmotini	ANCESTRAL SPECIES	13	ENSGT00390000004977 #8	ENSGT01090000259987.a.a.a #9	ENSGT00390000015709 #10	ENSGT00940000155992 #11	ENSGT00390000007989.h #12	ENSGT00940000158212.B #13	ENSGT00950000183022.b #14	ENSGT00940000162185 #15	ENSGT00940000162889 #16	ENSGT00940000163601	ENSGT00940000155682 #17	ENSGT00390000005581.a #18	ENSGT00520000055666.b #19	ENSGT00390000011570 #20	ENSGT00940000156322 #21	ENSGT00950000183170.b.b #22	ENSGT00390000011514 #23	ENSGT00730000110871.a.a.a.b #24	ENSGT00950000182997.a.b.b.a #25	ENSGT00940000160683 #27
Marmotini_b	ANCESTRAL SPECIES	182	ENSGT00390000004977 #8	ENSGT01090000259987.a.a.a #9	ENSGT00390000015709 #10	ENSGT00940000155992 #11	ENSGT00390000007989.h #12	ENSGT00940000158212.B #13	ENSGT00950000183022.b #14	ENSGT00940000162185 #15	ENSGT00940000162889 #16	ENSGT00940000163601	ENSGT00940000155682 #17	ENSGT00390000005581.a #18	ENSGT00520000055666.b #19	ENSGT00390000011570 #20	ENSGT00940000156322 #21	ENSGT00950000183170.b.b #22	ENSGT00390000011514 #23	ENSGT00730000110871.a.a.a.b #24	ENSGT00950000182997.a.b.b.a #25	ENSGT00940000160683 #27
Squirrel	MODERN SPECIES	378	ENSSTOG00000010587 ##7	PTTG1IP (ENSSTOG00000021779) #8	ITGB2 (ENSSTOG00000001412) #9	SLX9 (ENSSTOG00000028031) #10	ADARB1 (ENSSTOG00000015792) #11	POFUT2 (ENSSTOG00000028617) #12	ENSSTOG00000027467 #13	SLC19A1 (ENSSTOG00000007113) #14	PCBP3 (ENSSTOG00000007178) #15	ENSSTOG00000022346	COL6A2 (ENSSTOG00000024366) #17	FTCD (ENSSTOG00000020132) #18	SPATC1L (ENSSTOG00000026388) #19	LSS (ENSSTOG00000007503) #20	MCM3AP (ENSSTOG00000007531) #21	YBEY (ENSSTOG00000029373) #22	ENSSTOG00000031143 #23	PCNT (ENSSTOG00000007621) #24	DIP2A (ENSSTOG00000007172) #25	PRMT2 (ENSSTOG00000016495) #27
Arctic ground squirrel	MODERN SPECIES	704											COL6A2 (ENSUPAG00010007568) #17	FTCD (ENSUPAG00010007605) #18	SPATC1L (ENSUPAG00010007627) #19	LSS (ENSUPAG00010007641) #20	MCM3AP (ENSUPAG00010007682) #21	YBEY (ENSUPAG00010007732) #22	PCNT (ENSUPAG00010007767) #24	DIP2A (ENSUPAG00010007831) #25	PRMT2 (ENSUPAG00010008124) #27	ENSUPAG00010008141
Eurasian red squirrel	MODERN SPECIES	1	ENSSVLG00005022452 ##7	ENSSVLG00005022355 #8	ITGB2 (ENSSVLG00005022020) #9	SLX9 (ENSSVLG00005021933) #10	ADARB1 (ENSSVLG00005021761) #11	POFUT2 (ENSSVLG00005021705) #12	SLC19A1 (ENSSVLG00005020132) #14	PCBP3 (ENSSVLG00005019852) #15	COL6A1 (ENSSVLG00005019712) #16	COL6A2 (ENSSVLG00005019580) #17	ENSSVLG00005019331 #18	ENSSVLG00005019107 #18	SPATC1L (ENSSVLG00005019009) #19	LSS (ENSSVLG00005018385) #20	MCM3AP (ENSSVLG00005018327) #21	YBEY (ENSSVLG00005018192) #22	ENSSVLG00005018102 #23	ENSSVLG00005018080	DIP2A (ENSSVLG00005015407) #25	S100B (ENSSVLG00005014991) #26	PRMT2 (ENSSVLG00005014458) #27
Rodentia_B	ANCESTRAL SPECIES	2	ENSGT00950000182895.a.b.j ##7	ENSGT00390000004977 #8	ENSGT01090000259987.a.a.a #9	ENSGT00390000015709 #10	ENSGT00940000155992 #11	ENSGT00390000007989 #12	ENSGT00940000158212.B #13	ENSGT00950000183022.b #14	ENSGT00940000162185 #15	ENSGT00940000162889 #16	ENSGT00940000155682 #17	ENSGT00390000005581.a #18	ENSGT00520000055666.b #19	ENSGT00390000011570 #20	ENSGT00940000156322 #21	ENSGT00950000183170.b.b #22	ENSGT00390000011514 #23	ENSGT00960000191699	ENSGT00730000110871.a.a.a.b #24	ENSGT00950000182997.a.b.b.a #25	ENSGT00940000161997.a #26	ENSGT00940000160683 #27
Kangaroo rat	MODERN SPECIES	478	Sumo3 (ENSDORG00000025904) ##7	Pttg1ip (ENSDORG00000028984) #8	ENSDORG00000012531 #9	Fam207a (ENSDORG00000028131) #10	Adarb1 (ENSDORG00000000619) #11	Pofut2 (ENSDORG00000009350) #12	ENSDORG00000011477	Slc19a1 (ENSDORG00000008087) #14	Pcbp3 (ENSDORG00000003640) #15	ENSDORG00000004103	Col6a2 (ENSDORG00000028732) #17	Ftcd (ENSDORG00000004547) #18	Spatc1l (ENSDORG00000010414) #19	Lss (ENSDORG00000010415) #20	Mcm3ap (ENSDORG00000004416) #21	Ybey (ENSDORG00000024242) #22	ENSDORG00000007242 #23	Pcnt (ENSDORG00000007244) #24	ENSDORG00000027954	Dip2a (ENSDORG00000012447) #25	S100b (ENSDORG00000013831) #26
Myomorpha	ANCESTRAL SPECIES	14	ENSGT00950000182895.a.b.j ##7	ENSGT00390000004977 #8	ENSGT01090000259987.a.a.a.c #9	ENSGT00390000015709 #10	ENSGT00940000155992 #11	ENSGT00390000007989 #12	ENSGT00940000158212.B #13	ENSGT00950000183022.b #14	ENSGT00940000162185 #15	ENSGT00940000162889 #16	ENSGT00940000155682 #17	ENSGT00390000005581.a #18	ENSGT00520000055666.b #19	ENSGT00390000011570 #20	ENSGT00940000156322 #21	ENSGT00950000183170.b.b #22	ENSGT00390000011514 #23	ENSGT00960000191699	ENSGT00730000110871.a.a.a.b #24	ENSGT00950000182997.a.b.b.a #25	ENSGT00940000161997.a #26	ENSGT00940000160683 #27
Muroidea	ANCESTRAL SPECIES	11	ENSGT00950000182895.a.b.j ##7	ENSGT00390000004977 #8	ENSGT01090000259987.a.a.a.c #9	ENSGT00390000015709 #10	ENSGT00940000155992 #11	ENSGT00390000007989 #12	ENSGT00940000158212.B #13	ENSGT00950000183022.b #14	ENSGT00940000162185 #15	ENSGT00940000162889 #16	ENSGT00940000155682 #17	ENSGT00390000005581.a #18	ENSGT00520000055666.b #19	ENSGT00390000011570 #20	ENSGT00940000156322 #21	ENSGT00950000183170.b.b #22	ENSGT00390000011514 #23	ENSGT00960000191699	ENSGT00730000110871.a.a.a.b #24	ENSGT00950000182997.a.b.b.a #25	ENSGT00940000161997.a #26	ENSGT00940000160683 #27
Muroidea_A	ANCESTRAL SPECIES	8	ENSGT00950000182895.a.b.j ##7	ENSGT00390000004977 #8	ENSGT01090000259987.a.a.a.c #9	ENSGT00390000015709 #10	ENSGT00940000155992 #11	ENSGT00390000007989 #12	ENSGT00940000158212.B #13	ENSGT00950000183022.b #14	ENSGT00940000162185 #15	ENSGT00940000162889 #16	ENSGT00940000155682 #17	ENSGT00390000005581.a #18	ENSGT00520000055666.b #19	ENSGT00390000011570 #20	ENSGT00940000156322 #21	ENSGT00950000183170.b.b #22	ENSGT00390000011514 #23	ENSGT00960000191699	ENSGT00730000110871.a.a.a.b #24	ENSGT00950000182997.a.b.b.a #25	ENSGT00940000161997.a #26	ENSGT00940000160683 #27	ENSGT00940000160846.c	ENSGT00940000160846.d	ENSGT00940000161054	ENSGT00940000163531	ENSGT00940000161808	ENSGT00390000015147	ENSGT00940000161345	ENSGT00940000156340.a	ENSGT00440000038585
Cricetidae	ANCESTRAL SPECIES	9	ENSGT00950000182895.a.b.j ##7	ENSGT00390000004977 #8	ENSGT01090000259987.a.a.a.c #9	ENSGT00390000015709 #10	ENSGT00940000155992 #11	ENSGT00390000007989 #12	ENSGT00940000158212.B #13	ENSGT00950000183022.b #14	ENSGT00940000162185 #15	ENSGT00940000162889 #16	ENSGT00940000155682 #17	ENSGT00390000005581.a #18	ENSGT00520000055666.b #19	ENSGT00390000011570 #20	ENSGT00940000156322 #21	ENSGT00950000183170.b.b #22	ENSGT00390000011514 #23	ENSGT00730000110871.a.a.a.b #24	ENSGT00950000182997.a.b.b.a #25	ENSGT00940000161997.a #26	ENSGT00940000160683 #27	ENSGT00940000160846.c	ENSGT00940000160846.d	ENSGT00940000161054	ENSGT00940000163531	ENSGT00940000161808	ENSGT00390000015147	ENSGT00940000161345	ENSGT00940000156340.a	ENSGT00440000038585	ENSGT00530000063156.a.a.b
Cricetinae	ANCESTRAL SPECIES	24	ENSGT00950000182895.a.b.j ##7	ENSGT00390000004977 #8	ENSGT01090000259987.a.a.a.c #9	ENSGT00390000015709 #10	ENSGT00940000155992 #11	ENSGT00390000007989 #12	ENSGT00940000158212.B #13	ENSGT00950000183022.b #14	ENSGT00940000162185 #15	ENSGT00940000162889 #16	ENSGT00940000155682 #17	ENSGT00390000005581.a #18	ENSGT00520000055666.b #19	ENSGT00390000011570 #20	ENSGT00940000156322 #21	ENSGT00950000183170.b.b #22	ENSGT00390000011514 #23	ENSGT00730000110871.a.a.a.b #24	ENSGT00950000182997.a.b.b.a #25	ENSGT00940000161997.a #26	ENSGT00940000160683 #27	ENSGT00940000160846.c	ENSGT00940000161054	ENSGT00940000163531	ENSGT00940000161808	ENSGT00940000161345	ENSGT00940000156340.a	ENSGT00440000038585	ENSGT00530000063156.a.a.b	ENSGT00940000155608	ENSGT00940000162786
Golden Hamster	MODERN SPECIES	641	ENSMAUG00000021821 #9	Fam207a (ENSMAUG00000009365) #10	Adarb1 (ENSMAUG00000009334) #11	Pofut2 (ENSMAUG00000006922) #12	Col18a1 (ENSMAUG00000008076) #13	Slc19a1 (ENSMAUG00000007979) #14	ENSMAUG00000012520	Pcbp3 (ENSMAUG00000007036) #15	ENSMAUG00000020615	Col6a2 (ENSMAUG00000022073) #17	Ftcd (ENSMAUG00000004152) #18	Spatc1l (ENSMAUG00000006869) #19	Lss (ENSMAUG00000005365) #20	Mcm3ap (ENSMAUG00000008393) #21	ENSMAUG00000002217	Ybey (ENSMAUG00000005858) #22	2610028H24Rik (ENSMAUG00000009720) #23	Pcnt (ENSMAUG00000022248) #24	Dip2a (ENSMAUG00000018650) #25	S100b (ENSMAUG00000015774) #26	Prmt2 (ENSMAUG00000017688) #27	Slc5a4a (ENSMAUG00000019866)	Zfp280b (ENSMAUG00000015647)	ENSMAUG00000011759	Vpreb3 (ENSMAUG00000010815)	Chchd10 (ENSMAUG00000012109)	Mmp11 (ENSMAUG00000012311)	Smarcb1 (ENSMAUG00000021023)	Derl3 (ENSMAUG00000016207)	ENSMAUG00000002603	Gstt4 (ENSMAUG00000010826)
Chinese hamster chok1gshd	MODERN SPECIES	204	Sumo3 (ENSCGRG00001014923) ##7	Pttg1ip (ENSCGRG00001000333) #8	Itgb2 (ENSCGRG00001016235) #9	Fam207a (ENSCGRG00001016236) #10	Adarb1 (ENSCGRG00001023922) #11	Pofut2 (ENSCGRG00001022765) #12	Col18a1 (ENSCGRG00001013369) #13	SLC19A1 (ENSCGRG00001016846) #14	Pcbp3 (ENSCGRG00001006836) #15	Col6a1 (ENSCGRG00001017421) #16	Col6a2 (ENSCGRG00001003342) #17	Ftcd (ENSCGRG00001011730) #18	Spatc1l (ENSCGRG00001017850) #19	Lss (ENSCGRG00001020282) #20	Mcm3ap (ENSCGRG00001015274) #21	Ybey (ENSCGRG00001022036) #22	2610028H24Rik (ENSCGRG00001023849) #23	Pcnt (ENSCGRG00001017614) #24	Dip2a (ENSCGRG00001004170) #25	ENSCGRG00001009479	Prmt2 (ENSCGRG00001010555) #27	ENSCGRG00001002616	ENSCGRG00001024447	Zfp280b (ENSCGRG00001011844)	ENSCGRG00001000305	Vpreb3 (ENSCGRG00001007138)	Chchd10 (ENSCGRG00001023480)	Mmp11 (ENSCGRG00001001274)	Smarcb1 (ENSCGRG00001013732)	Derl3 (ENSCGRG00001023562)	Mif (ENSCGRG00001002079)
Cricetidae_B	ANCESTRAL SPECIES	12	ENSGT00950000182895.a.b.j ##7	ENSGT00390000004977 #8	ENSGT01090000259987.a.a.a.c #9	ENSGT00390000015709 #10	ENSGT00940000155992 #11	ENSGT00390000007989 #12	ENSGT00940000158212.B #13	ENSGT00950000183022.b #14	ENSGT00940000162185 #15	ENSGT00940000162889 #16	ENSGT00940000155682 #17	ENSGT00390000005581.a #18	ENSGT00520000055666.b #19	ENSGT00390000011570 #20	ENSGT00940000156322 #21	ENSGT00950000183170.b.b #22	ENSGT00390000011514 #23	ENSGT00730000110871.a.a.a.b #24	ENSGT00950000182997.a.b.b.a #25	ENSGT00940000161997.a #26	ENSGT00940000160683 #27	ENSGT00940000160846.c	ENSGT00940000160846.d	ENSGT00940000161054	ENSGT00940000163531	ENSGT00940000161808	ENSGT00390000015147	ENSGT00940000161345	ENSGT00940000156340.a	ENSGT00440000038585	ENSGT00530000063156.a.a.b
Northern American deer mouse	MODERN SPECIES	13	ENSPEMG00000029963 ##7	Pttg1ip (ENSPEMG00000022833) #8	Itgb2 (ENSPEMG00000023793) #9	Fam207a (ENSPEMG00000029013) #10	Adarb1 (ENSPEMG00000022360) #11	Pofut2 (ENSPEMG00000021691) #12	Col18a1 (ENSPEMG00000019720) #13	Slc19a1 (ENSPEMG00000019847) #14	Pcbp3 (ENSPEMG00000000587) #15	Col6a1 (ENSPEMG00000011883) #16	Col6a2 (ENSPEMG00000023614) #17	Ftcd (ENSPEMG00000011905) #18	Spatc1l (ENSPEMG00000015524) #19	Lss (ENSPEMG00000024002) #20	Mcm3ap (ENSPEMG00000014754) #21	Ybey (ENSPEMG00000000492) #22	2610028H24Rik (ENSPEMG00000009493) #23	Pcnt (ENSPEMG00000012406) #24	Dip2a (ENSPEMG00000011906) #25	S100b (ENSPEMG00000024584) #26	Prmt2 (ENSPEMG00000016675) #27	Slc5a4a (ENSPEMG00000016494)	Slc5a4b (ENSPEMG00000018545)	Zfp280b (ENSPEMG00000023991)	Gm5134 (ENSPEMG00000017870)	Vpreb3 (ENSPEMG00000010214)	Gm867 (ENSPEMG00000025778)	Chchd10 (ENSPEMG00000000593)	Mmp11 (ENSPEMG00000011798)	Smarcb1 (ENSPEMG00000009146)	Derl3 (ENSPEMG00000001396)
Prairie vole	MODERN SPECIES	352	ENSMOCG00000021821 ##7	Pttg1ip (ENSMOCG00000020270) #8	Itgb2 (ENSMOCG00000022498) #9	Fam207a (ENSMOCG00000021449) #10	Adarb1 (ENSMOCG00000018324) #11	Pofut2 (ENSMOCG00000013158) #12	Col18a1 (ENSMOCG00000019606) #13	Slc19a1 (ENSMOCG00000008838) #14	Pcbp3 (ENSMOCG00000016127) #15	Col6a1 (ENSMOCG00000015635) #16	Col6a2 (ENSMOCG00000007120) #17	Ftcd (ENSMOCG00000013801) #18	Spatc1l (ENSMOCG00000012025) #19	Lss (ENSMOCG00000020263) #20	Mcm3ap (ENSMOCG00000018380) #21	Ybey (ENSMOCG00000012634) #22	2610028H24Rik (ENSMOCG00000022971) #23	Pcnt (ENSMOCG00000006875) #24	Dip2a (ENSMOCG00000015916) #25	S100b (ENSMOCG00000020304) #26	Prmt2 (ENSMOCG00000017602) #27	Slc5a4a (ENSMOCG00000003852)	Slc5a4b (ENSMOCG00000019990)	Zfp280b (ENSMOCG00000012097)	Gm5134 (ENSMOCG00000021314)	Vpreb3 (ENSMOCG00000008215)	Chchd10 (ENSMOCG00000010864)	Mmp11 (ENSMOCG00000020671)	Smarcb1 (ENSMOCG00000019899)	Derl3 (ENSMOCG00000017853)	Mif (ENSMOCG00000016316)
Murinae	ANCESTRAL SPECIES	18	ENSGT00950000182895.a.b.j ##7	ENSGT00390000004977 #8	ENSGT01090000259987.a.a.a.c #9	ENSGT00390000015709 #10	ENSGT00940000155992 #11	ENSGT00390000007989 #12	ENSGT00940000158212.B #13	ENSGT00950000183022.b #14	ENSGT00940000162185 #15	ENSGT00940000162889 #16	ENSGT00940000155682 #17	ENSGT00390000005581.a #18	ENSGT00520000055666.b #19	ENSGT00390000011570 #20	ENSGT00940000156322 #21	ENSGT00950000183170.b.b #22	ENSGT00390000011514 #23	ENSGT00960000191699	ENSGT00730000110871.a.a.a.b #24	ENSGT00950000182997.a.b.b.a #25	ENSGT00940000161997.a #26	ENSGT00940000160683 #27	ENSGT00940000160846.c	ENSGT00940000160846.d	ENSGT00940000161054	ENSGT00940000163531	ENSGT00940000161808	ENSGT00390000015147	ENSGT00940000161345	ENSGT00940000156340.a	ENSGT00440000038585
Mus	ANCESTRAL SPECIES	15	ENSGT00950000182895.a.b.j ##7	ENSGT00390000004977 #8	ENSGT01090000259987.a.a.a.c #9	ENSGT00390000015709 #10	ENSGT00940000155992 #11	ENSGT00390000007989 #12	ENSGT00940000158212.B #13	ENSGT00950000183022.b #14	ENSGT00940000162185 #15	ENSGT00940000162889 #16	ENSGT00940000155682 #17	ENSGT00390000005581.a #18	ENSGT00520000055666.b #19	ENSGT00390000011570 #20	ENSGT00940000156322 #21	ENSGT00950000183170.b.b #22	ENSGT00390000011514 #23	ENSGT00960000191699	ENSGT00730000110871.a.a.a.b #24	ENSGT00950000182997.a.b.b.a #25	ENSGT00940000161997.a #26	ENSGT00940000160683 #27	ENSGT00940000160846.c	ENSGT00940000160846.d	ENSGT00940000161054	ENSGT00940000163531	ENSGT00940000161808	ENSGT00390000015147	ENSGT00940000161345	ENSGT00940000156340.a	ENSGT00440000038585
Mus_A	ANCESTRAL SPECIES	11	ENSGT00390000004977 #8	ENSGT01090000259987.a.a.a.c #9	ENSGT00390000015709 #10	ENSGT00940000155992 #11	ENSGT00390000007989 #12	ENSGT00940000158212.B #13	ENSGT00950000183022.b #14	ENSGT00900000143399	ENSGT00940000162185 #15	ENSGT00940000162889 #16	ENSGT00940000155682 #17	ENSGT00390000005581.a #18	ENSGT00520000055666.b #19	ENSGT00390000011570 #20	ENSGT00940000156322 #21	ENSGT00950000183170.b.b #22	ENSGT00390000011514 #23	ENSGT00960000191699	ENSGT00730000110871.a.a.a.b #24	ENSGT00950000182997.a.b.b.a #25	ENSGT00940000161997.a #26	ENSGT00940000160683 #27	ENSGT00940000160846.c	ENSGT00940000160846.d	ENSGT00940000161054	ENSGT00940000163531	ENSGT00940000161808	ENSGT00390000015147	ENSGT00940000161345	ENSGT00940000156340.a	ENSGT00440000038585
Mus_B	ANCESTRAL SPECIES	10	ENSGT00390000004977 #8	ENSGT01090000259987.a.a.a.c #9	ENSGT00390000015709 #10	ENSGT00940000155992 #11	ENSGT00390000007989 #12	ENSGT00940000158212.B #13	ENSGT00950000183022.b #14	ENSGT00900000143399	ENSGT00940000162185 #15	ENSGT00940000162889 #16	ENSGT00940000155682 #17	ENSGT00390000005581.a #18	ENSGT00520000055666.b #19	ENSGT00390000011570 #20	ENSGT00940000156322 #21	ENSGT00950000183170.b.b #22	ENSGT00390000011514 #23	ENSGT00960000191699	ENSGT00730000110871.a.a.a.b #24	ENSGT00950000182997.a.b.b.a #25	ENSGT00940000161997.a #26	ENSGT00940000160683 #27	ENSGT00940000160846.c	ENSGT00940000160846.d	ENSGT00940000161054	ENSGT00940000163531	ENSGT00940000161808	ENSGT00390000015147	ENSGT00940000161345	ENSGT00940000156340.a	ENSGT00440000038585
Mouse	MODERN SPECIES	1	Sumo3 (ENSMUSG00000020265) ##7	Pttg1ip (ENSMUSG00000009291) #8	Itgb2 (ENSMUSG00000000290) #9	Fam207a (ENSMUSG00000032977) #10	Adarb1 (ENSMUSG00000020262) #11	Pofut2 (ENSMUSG00000020260) #12	Col18a1 (ENSMUSG00000001435) #13	Slc19a1 (ENSMUSG00000001436) #14	Pcbp3 (ENSMUSG00000001120) #15	Col6a1 (ENSMUSG00000001119) #16	Col6a2 (ENSMUSG00000020241) #17	Ftcd (ENSMUSG00000001155) #18	Spatc1l (ENSMUSG00000009115) #19	Lss (ENSMUSG00000033105) #20	Mcm3ap (ENSMUSG00000001150) #21	Ybey (ENSMUSG00000033126) #22	2610028H24Rik (ENSMUSG00000009114) #23	Gm56118 (ENSMUSG00000117965)	Pcnt (ENSMUSG00000001151) #24	Dip2a (ENSMUSG00000020231) #25	S100b (ENSMUSG00000033208) #26	Prmt2 (ENSMUSG00000020230) #27	Slc5a4a (ENSMUSG00000020229)	Slc5a4b (ENSMUSG00000020226)	Zfp280b (ENSMUSG00000049764)	Gm5134 (ENSMUSG00000033255)	Vpreb3 (ENSMUSG00000000903)	Gm867 (ENSMUSG00000050157)	Chchd10 (ENSMUSG00000049422)	Mmp11 (ENSMUSG00000000901)	Smarcb1 (ENSMUSG00000000902)
Mus_C	ANCESTRAL SPECIES	7	ENSGT00390000004977 #8	ENSGT01090000259987.a.a.a.c #9	ENSGT00390000015709 #10	ENSGT00940000155992 #11	ENSGT00390000007989 #12	ENSGT00940000158212.B #13	ENSGT00950000183022.b #14	ENSGT00900000143399	ENSGT00940000162185 #15	ENSGT00940000162889 #16	ENSGT00940000155682 #17	ENSGT00390000005581.a #18	ENSGT00520000055666.b #19	ENSGT00390000011570 #20	ENSGT00940000156322 #21	ENSGT00950000183170.b.b #22	ENSGT00390000011514 #23	ENSGT00730000110871.a.a.a.b #24	ENSGT00950000182997.a.b.b.a #25	ENSGT00940000161997.a #26	ENSGT00940000160683 #27	ENSGT00940000160846.c	ENSGT00940000160846.d	ENSGT00940000161054	ENSGT00940000163531	ENSGT00940000161808	ENSGT00940000161345	ENSGT00940000156340.a	ENSGT00440000038585	ENSGT00530000063156.a.a.b	ENSGT00940000155608.q.a.a.a.a
Steppe mouse	MODERN SPECIES	2997													ENSMSIG00000003212 #19	Lss (ENSMSIG00000003250) #20	Mcm3ap (ENSMSIG00000003384) #21	ENSMSIG00000003478 #22	2610028H24Rik (ENSMSIG00000003499) #23	Pcnt (ENSMSIG00000003573) #24	Dip2a (ENSMSIG00000004099) #25	S100b (ENSMSIG00000004765) #26	Prmt2 (ENSMSIG00000004778) #27	Slc5a4a (ENSMSIG00000004850)	Slc5a4b (ENSMSIG00000004902)	ENSMSIG00000004952	Gm5134 (ENSMSIG00000004960)	Vpreb3 (ENSMSIG00000005055)	Mmp11 (ENSMSIG00000005065)	Smarcb1 (ENSMSIG00000005155)	Derl3 (ENSMSIG00000005221)	ENSMSIG00000005270	Gstt2 (ENSMSIG00000005282)
spretus	MODERN SPECIES	1	Itgb2 (MGP_SPRETEiJ_G0016296) #9	Fam207a (MGP_SPRETEiJ_G0016295) #10	Adarb1 (MGP_SPRETEiJ_G0016294) #11	Pofut2 (MGP_SPRETEiJ_G0016293) #12	MGP_SPRETEiJ_G0016292	Col18a1 (MGP_SPRETEiJ_G0016291) #13	Slc19a1 (MGP_SPRETEiJ_G0016290) #14	MGP_SPRETEiJ_G0016289	Pcbp3 (MGP_SPRETEiJ_G0016288) #15	Col6a1 (MGP_SPRETEiJ_G0016287) #16	Col6a2 (MGP_SPRETEiJ_G0016286) #17	Ftcd (MGP_SPRETEiJ_G0016285) #18	Spatc1l (MGP_SPRETEiJ_G0016284) #19	Lss (MGP_SPRETEiJ_G0016283) #20	Mcm3ap (MGP_SPRETEiJ_G0016282) #21	Ybey (MGP_SPRETEiJ_G0016281) #22	2610028H24Rik (MGP_SPRETEiJ_G0016280) #23	Pcnt (MGP_SPRETEiJ_G0016279) #24	MGP_SPRETEiJ_G0016278 #25	S100b (MGP_SPRETEiJ_G0016277) #26	Prmt2 (MGP_SPRETEiJ_G0016276) #27	Slc5a4a (MGP_SPRETEiJ_G0016275)	Slc5a4b (MGP_SPRETEiJ_G0016274)	Zfp280b (MGP_SPRETEiJ_G0016273)	Gm5134 (MGP_SPRETEiJ_G0016272)	Vpreb3 (MGP_SPRETEiJ_G0016271)	Chchd10 (MGP_SPRETEiJ_G0016270)	Mmp11 (MGP_SPRETEiJ_G0016269)	Smarcb1 (MGP_SPRETEiJ_G0016268)	Derl3 (MGP_SPRETEiJ_G0016267)	Mif (MGP_SPRETEiJ_G0016266)
Ryukyu mouse	MODERN SPECIES	1	Itgb2 (MGP_CAROLIEiJ_G0015483) #9	Fam207a (MGP_CAROLIEiJ_G0015482) #10	Adarb1 (MGP_CAROLIEiJ_G0015481) #11	Pofut2 (MGP_CAROLIEiJ_G0015480) #12	MGP_CAROLIEiJ_G0015479	Col18a1 (MGP_CAROLIEiJ_G0015478) #13	Slc19a1 (MGP_CAROLIEiJ_G0015477) #14	MGP_CAROLIEiJ_G0015476	Pcbp3 (MGP_CAROLIEiJ_G0015475) #15	Col6a1 (MGP_CAROLIEiJ_G0015474) #16	Col6a2 (MGP_CAROLIEiJ_G0015473) #17	Ftcd (MGP_CAROLIEiJ_G0015472) #18	Spatc1l (MGP_CAROLIEiJ_G0015471) #19	Lss (MGP_CAROLIEiJ_G0015470) #20	Mcm3ap (MGP_CAROLIEiJ_G0015469) #21	Ybey (MGP_CAROLIEiJ_G0015468) #22	2610028H24Rik (MGP_CAROLIEiJ_G0015467) #23	Pcnt (MGP_CAROLIEiJ_G0015466) #24	Dip2a (MGP_CAROLIEiJ_G0015465) #25	S100b (MGP_CAROLIEiJ_G0015464) #26	Prmt2 (MGP_CAROLIEiJ_G0015463) #27	Slc5a4a (MGP_CAROLIEiJ_G0015462)	Slc5a4b (MGP_CAROLIEiJ_G0015461)	Zfp280b (MGP_CAROLIEiJ_G0015460)	Gm5134 (MGP_CAROLIEiJ_G0015459)	Vpreb3 (MGP_CAROLIEiJ_G0015458)	Chchd10 (MGP_CAROLIEiJ_G0015457)	Mmp11 (MGP_CAROLIEiJ_G0015456)	Smarcb1 (MGP_CAROLIEiJ_G0015455)	Derl3 (MGP_CAROLIEiJ_G0015454)	Mif (MGP_CAROLIEiJ_G0015453)
Shrew mouse	MODERN SPECIES	22	Pttg1ip (MGP_PahariEiJ_G0030897) #8	Itgb2 (MGP_PahariEiJ_G0030896) #9	Fam207a (MGP_PahariEiJ_G0030895) #10	Adarb1 (MGP_PahariEiJ_G0030894) #11	Pofut2 (MGP_PahariEiJ_G0030893) #12	Col18a1 (MGP_PahariEiJ_G0030892) #13	Slc19a1 (MGP_PahariEiJ_G0030891) #14	MGP_PahariEiJ_G0030890	Pcbp3 (MGP_PahariEiJ_G0030889) #15	Col6a1 (MGP_PahariEiJ_G0030888) #16	Col6a2 (MGP_PahariEiJ_G0030887) #17	Ftcd (MGP_PahariEiJ_G0030886) #18	Spatc1l (MGP_PahariEiJ_G0030885) #19	Lss (MGP_PahariEiJ_G0030884) #20	Mcm3ap (MGP_PahariEiJ_G0030883) #21	Ybey (MGP_PahariEiJ_G0030882) #22	2610028H24Rik (MGP_PahariEiJ_G0030881) #23	Pcnt (MGP_PahariEiJ_G0030880) #24	Dip2a (MGP_PahariEiJ_G0030879) #25	S100b (MGP_PahariEiJ_G0030878) #26	Prmt2 (MGP_PahariEiJ_G0030877) #27	Slc5a4a (MGP_PahariEiJ_G0030876)	Gm5134 (MGP_PahariEiJ_G0030875)	MGP_PahariEiJ_G0030874	Chchd10 (MGP_PahariEiJ_G0030873)	Mmp11 (MGP_PahariEiJ_G0030872)	Smarcb1 (MGP_PahariEiJ_G0030871)	Derl3 (MGP_PahariEiJ_G0030870)	Mif (MGP_PahariEiJ_G0030869)	Gstt2 (MGP_PahariEiJ_G0030868)	Gstt4 (MGP_PahariEiJ_G0030867)
Rat	MODERN SPECIES	12	Pttg1ip (ENSRNOG00000001223) #8	Itgb2 (ENSRNOG00000001224) #9	Slx9 (ENSRNOG00000001225) #10	Nme2-ps1 (ENSRNOG00000001226)	Adarb1 (ENSRNOG00000001227) #11	Pofut2 (ENSRNOG00000001228) #12	Col18a1 (ENSRNOG00000001229) #13	Slc19a1 (ENSRNOG00000001232) #14	Pcbp3 (ENSRNOG00000001245) #15	Col6a1 (ENSRNOG00000001249) #16	Col6a2 (ENSRNOG00000001254) #17	Ftcd (ENSRNOG00000001261) #18	Spatc1l (ENSRNOG00000070409) #19	Lss (ENSRNOG00000054549) #20	Mcm3ap (ENSRNOG00000001272) #21	Ybey (ENSRNOG00000021365) #22	RGD1564149 (ENSRNOG00000012714) #23	Pcnt (ENSRNOG00000001276) #24	Dip2a (ENSRNOG00000043212) #25	S100b (ENSRNOG00000001295) #26	Prmt2 (ENSRNOG00000001297) #27	Slc5a4 (ENSRNOG00000049734)	Slc5a4b (ENSRNOG00000001298)	Zfp280b (ENSRNOG00000028441)	RGD1563815 (ENSRNOG00000029979)	Vpreb3 (ENSRNOG00000065441)	RGD1564162 (ENSRNOG00000028386)	Chchd10 (ENSRNOG00000028356)	Mmp11 (ENSRNOG00000028344)	Smarcb1 (ENSRNOG00000028302)	Derl3 (ENSRNOG00000028243)
Upper Galilee mountains blind mole rat	MODERN SPECIES	1105	Sumo3 (ENSNGAG00000009915) ##7	Pttg1ip (ENSNGAG00000014261) #8	Itgb2 (ENSNGAG00000015702) #9	Fam207a (ENSNGAG00000020787) #10	Adarb1 (ENSNGAG00000021602) #11	Pofut2 (ENSNGAG00000016043) #12	Col18a1 (ENSNGAG00000019514) #13	ENSNGAG00000003477 #14	Pcbp3 (ENSNGAG00000005416) #15	Col6a1 (ENSNGAG00000010525) #16	Col6a2 (ENSNGAG00000013702) #17	Ftcd (ENSNGAG00000015978) #18	Spatc1l (ENSNGAG00000016890) #19	Lss (ENSNGAG00000018100) #20	Mcm3ap (ENSNGAG00000020806) #21	Ybey (ENSNGAG00000000949) #22	ENSNGAG00000001257 #23	Pcnt (ENSNGAG00000006451) #24	Dip2a (ENSNGAG00000014719) #25	S100b (ENSNGAG00000017093) #26	ENSNGAG00000017453 #27
Lagomorpha	ANCESTRAL SPECIES	266														ENSGT00390000011570 #20	ENSGT00940000156322 #21	ENSGT00950000183170.b.b #22	ENSGT00390000011514 #23	ENSGT00730000110871.a.a.a.b #24	ENSGT00950000182997.a.b.b.a #25	ENSGT00940000161997.a #26	ENSGT00940000160683 #27	ENSGT00940000154486.b.a.a.b
Rabbit	MODERN SPECIES	5												ENSOCUG00000000409 #17	ENSOCUG00000026058	LSS (ENSOCUG00000001938) #20	MCM3AP (ENSOCUG00000004784) #21	YBEY (ENSOCUG00000027700) #22	ENSOCUG00000004797 #23	PCNT (ENSOCUG00000004806) #24	DIP2A (ENSOCUG00000004831) #25	S100B (ENSOCUG00000001473) #26	PRMT2 (ENSOCUG00000016126) #27	ENSOCUG00000028055	ENSOCUG00000017611	GTPBP6 (ENSOCUG00000008245)	PLCXD1 (ENSOCUG00000025223)	OLIG1 (ENSOCUG00000027389)	C21orf62 (ENSOCUG00000007160)	SYNJ1 (ENSOCUG00000001420)	CFAP298 (ENSOCUG00000000461)	ENSOCUG00000012278	URB1 (ENSOCUG00000009381)
Pika	MODERN SPECIES	2600															MCM3AP (ENSOPRG00000014690) #21	ENSOPRG00000014733 #22	ENSOPRG00000014740 #23
Tree shrew	MODERN SPECIES	2055										COL6A2 (ENSTBEG00000015302) #17	FTCD (ENSTBEG00000015952) #18	SPATC1L (ENSTBEG00000016200) #19	LSS (ENSTBEG00000016213) #20	MCM3AP (ENSTBEG00000016484) #21	ENSTBEG00000016787	YBEY (ENSTBEG00000016856) #22	ENSTBEG00000016931 #23