Rodentia	ANCESTRAL SPECIES	13	ENSGT00940000157323	ENSGT00390000008458	ENSGT00940000161583	ENSGT00390000008984	ENSGT00940000162309	ENSGT00390000010494	ENSGT00390000003555	ENSGT00940000156842	ENSGT00640000091487	ENSGT01060000248588.a.c.b	ENSGT00390000012346	ENSGT00940000155372	ENSGT00950000183130.A	ENSGT01010000222815	ENSGT00940000155988	ENSGT01070000253744.a.b #22	ENSGT00510000046908.a.a.b #23	ENSGT00390000007586.a.b #24	ENSGT00940000158340 #25	ENSGT00940000153395.a #26	ENSGT00940000155475	ENSGT00800000124172	ENSGT00530000064570	ENSGT00940000156337	ENSGT00950000183027.b	ENSGT00950000183054.a.a.a	ENSGT00950000182924.A.b.a.b	ENSGT00550000075003	ENSGT00940000158131	ENSGT00940000160665	ENSGT00510000046470.a.a.a.d.b
Rodentia_B	ANCESTRAL SPECIES	30	ENSGT00940000157323	ENSGT00390000008458	ENSGT00940000161583	ENSGT00390000008984	ENSGT00940000162309	ENSGT00390000010494	ENSGT00390000003555	ENSGT00940000156842	ENSGT00640000091487	ENSGT01060000248588.a.c.b	ENSGT00390000012346	ENSGT00940000155372	ENSGT00950000183130.A	ENSGT01010000222815	ENSGT00940000155988	ENSGT01070000253744.a.b #22	ENSGT00510000046908.a.a.b #23	ENSGT00390000007586.a.b #24	ENSGT00940000158340 #25	ENSGT00940000153395.a #26	ENSGT00940000155475	ENSGT00800000124172	ENSGT00530000064570	ENSGT00940000156337	ENSGT00950000183027.b	ENSGT00950000183054.a.a.a	ENSGT00950000182924.A.b.a.b	ENSGT00550000075003	ENSGT00940000158131	ENSGT00940000160665	ENSGT00510000046470.a.a.a.d.b
Myomorpha	ANCESTRAL SPECIES	42	ENSGT00960000190929	ENSGT00940000156633	ENSGT00940000160729.g	ENSGT00730000111564	ENSGT00940000158189	ENSGT00950000183033.a.b.a	ENSGT00940000162273	ENSGT00570000079168.b.b.b	ENSGT00950000183175.B.b	ENSGT01030000234633.C.b	ENSGT00940000153912.B	ENSGT00940000155192 #17	ENSGT00940000160064.b #18	ENSGT00910000144252 #20	ENSGT00940000160278 #21	ENSGT01070000253744.a.b #22	ENSGT00510000046908.a.a.b #23	ENSGT00390000007586.a.b #24	ENSGT00940000158340 #25	ENSGT00940000153395.a #26	ENSGT00940000155475	ENSGT00800000124172	ENSGT00530000064570	ENSGT00940000156337	ENSGT00950000183027.b	ENSGT00950000183054.a.a.a	ENSGT00950000182924.A.b.a.b	ENSGT00550000075003	ENSGT00940000158131	ENSGT00940000160665	ENSGT00510000046470.a.a.a.d.b
Muroidea	ANCESTRAL SPECIES	74	ENSGT00960000190929	ENSGT00940000156633	ENSGT00940000160729.g	ENSGT00730000111564	ENSGT00940000158189	ENSGT00950000183033.a.b.a	ENSGT00940000162273	ENSGT00570000079168.b.b.b	ENSGT00950000183175.B.b	ENSGT01030000234633.C.b	ENSGT00940000153912.B	ENSGT00940000155192 #17	ENSGT00940000160064.b #18	ENSGT00910000144252 #20	ENSGT00940000160278 #21	ENSGT01070000253744.a.b #22	ENSGT00510000046908.a.a.b #23	ENSGT00390000007586.a.b #24	ENSGT00940000158340 #25	ENSGT00940000153395.a #26	ENSGT01100000263497.E.b #28	ENSGT00950000182964.a.a #29	ENSGT00520000055591.a #30	ENSGT00940000159829 #31	ENSGT00530000064198 #32
Muroidea_A	ANCESTRAL SPECIES	4	ENSGT00960000190929	ENSGT00940000156633	ENSGT00940000160729.g	ENSGT00940000158189	ENSGT00730000111564	ENSGT00950000183033.a.b.a	ENSGT00940000162273	ENSGT00570000079168.b.b.b	ENSGT00950000183175.B.b	ENSGT01030000234633.C.b	ENSGT00940000153912.B	ENSGT00940000155192 #17	ENSGT00940000160064.b #18	ENSGT00910000144252 #20	ENSGT00940000160278 #21	ENSGT01070000253744.a.b #22	ENSGT00510000046908.a.a.b #23	ENSGT00390000007586.a.b #24	ENSGT00940000158340 #25	ENSGT00940000163656	ENSGT00940000153395.a #26	ENSGT01100000263497.E.b #28	ENSGT00950000182964.a.a #29	ENSGT00520000055591.a #30	ENSGT00940000159829 #31	ENSGT00530000064198 #32	ENSGT00390000018245.d #33	ENSGT00940000153094.m.b	ENSGT00390000004352	ENSGT00940000158121	ENSGT00390000012177
Cricetidae	ANCESTRAL SPECIES	3	ENSGT00940000162279	ENSGT00940000156633	ENSGT00940000160729.g	ENSGT00940000158189	ENSGT00730000111564	ENSGT00950000183033.a.b.a	ENSGT00940000162273	ENSGT00570000079168.b.b.b	ENSGT00950000183175.B.b	ENSGT01030000234633.C.b	ENSGT00940000153912.B	ENSGT00940000155192 #17	ENSGT00940000160064.b #18	ENSGT00910000144252 #20	ENSGT00940000160278 #21	ENSGT01070000253744.a.b #22	ENSGT00510000046908.a.a.b #23	ENSGT00390000007586.a.b #24	ENSGT00940000158340 #25	ENSGT00940000163656	ENSGT00940000153395.a #26	ENSGT01100000263497.E.b #28	ENSGT00950000182964.a.a #29	ENSGT00520000055591.a #30	ENSGT00940000159829 #31	ENSGT00530000064198 #32	ENSGT00390000018245.d #33	ENSGT00940000153094.m.b.a.a.a	ENSGT00390000004352	ENSGT00940000158121	ENSGT00390000012177
Cricetidae_B	ANCESTRAL SPECIES	10	ENSGT00940000162279	ENSGT00940000156633	ENSGT00940000160729.g	ENSGT00940000158189	ENSGT00730000111564	ENSGT00950000183033.a.b.a	ENSGT00940000162273	ENSGT00570000079168.b.b.b	ENSGT00950000183175.B.b	ENSGT01030000234633.C.b	ENSGT00940000153912.B	ENSGT00940000155192 #17	ENSGT00940000160064.b #18	ENSGT00910000144252 #20	ENSGT00940000160278 #21	ENSGT01070000253744.a.b #22	ENSGT00510000046908.a.a.b #23	ENSGT00390000007586.a.b #24	ENSGT00940000158340 #25	ENSGT00940000153395.a #26	ENSGT01100000263497.E.b #28	ENSGT00950000182964.a.a #29	ENSGT00520000055591.a #30	ENSGT00940000159829 #31	ENSGT00530000064198 #32	ENSGT00390000018245.d #33	ENSGT00940000153094.m.b.a.a.a	ENSGT00390000004352	ENSGT00940000158121	ENSGT00390000012177	ENSGT00940000162575
Prairie vole	MODERN SPECIES	353	Trappc12 (ENSMOCG00000002223) #7	Adi1 (ENSMOCG00000021025) #8	Rnaseh1 (ENSMOCG00000015522) #9	Rps7 (ENSMOCG00000014785) #10	Colec11 (ENSMOCG00000014421) #11	Allc (ENSMOCG00000000545) #12	ENSMOCG00000012384 #13	Maob (ENSMOCG00000020444) #14	Maoa (ENSMOCG00000007575) #15	ENSMOCG00000017653 #16	ENSMOCG00000013942 #17	Atoh1 (ENSMOCG00000007284) #18	ENSMOCG00000009573 #19	Smarcad1 (ENSMOCG00000017142) #20	Hpgds (ENSMOCG00000006347) #21	Qrfprl (ENSMOCG00000012303) #22	Tnip3 (ENSMOCG00000020430) #23	Ndnf (ENSMOCG00000013511) #24	Prdm5 (ENSMOCG00000016267) #25	Mad2l1 (ENSMOCG00000011109) #26	ENSMOCG00000019752 #27	Gng12 (ENSMOCG00000017337) #28	Gadd45a (ENSMOCG00000014496) #29	Serbp1 (ENSMOCG00000015573) #30	Il12rb2 (ENSMOCG00000022701) #31	Il23r (ENSMOCG00000010821) #32	Tacstd2 (ENSMOCG00000008197) #33	Kcns3 (ENSMOCG00000007505) #34	Rdh14 (ENSMOCG00000005865) #35	Nt5c1b (ENSMOCG00000020580) #36	ENSMOCG00000013225 #37
Northern American deer mouse	DUPLICATION
Northern American deer mouse	MODERN SPECIES	16	ENSPEMG00000028242	ENSPEMG00000029449	ENSPEMG00000030176	ENSPEMG00000027629	ENSPEMG00000028948	ENSPEMG00000028122	ENSPEMG00000026727	ENSPEMG00000030232	ENSPEMG00000025809	ENSPEMG00000028988	ENSPEMG00000028408	Grid2 (ENSPEMG00000029150) #17	Atoh1 (ENSPEMG00000001659) #18	Smarcad1 (ENSPEMG00000001854) #20	Hpgds (ENSPEMG00000011127) #21	Qrfprl (ENSPEMG00000019610) #22	Tnip3 (ENSPEMG00000019457) #23	Ndnf (ENSPEMG00000010763) #24	Prdm5 (ENSPEMG00000019722) #25	4930544G11Rik (ENSPEMG00000022849)	ENSPEMG00000027522	Mad2l1 (ENSPEMG00000021067) #26	Gng12 (ENSPEMG00000025022) #28	Gadd45a (ENSPEMG00000022414) #29	Serbp1 (ENSPEMG00000021232) #30	Il12rb2 (ENSPEMG00000021493) #31	Il23r (ENSPEMG00000020840) #32	Tacstd2 (ENSPEMG00000003281) #33	ENSPEMG00000031157	ENSPEMG00000027204	ENSPEMG00000027512
Northern American deer mouse	MODERN SPECIES	19	Agtr1b (ENSPEMG00000026806)	Cpb1 (ENSPEMG00000015871)	Cpa3 (ENSPEMG00000000978)	Gyg (ENSPEMG00000016029)	Hltf (ENSPEMG00000016172)	Hps3 (ENSPEMG00000006862)	Cp (ENSPEMG00000013146)	ENSPEMG00000026230	ENSPEMG00000025409	ENSPEMG00000013052	ENSPEMG00000008579	ENSPEMG00000025311	Anxa5 (ENSPEMG00000015439)	ENSPEMG00000026454	ENSPEMG00000001402	Qrfpr (ENSPEMG00000000133) #22	Zfp267 (ENSPEMG00000028230)	Acad9 (ENSPEMG00000010549)	ENSPEMG00000011597	Mccc1 (ENSPEMG00000014164)	ENSPEMG00000018868	Atp11b (ENSPEMG00000001656)	ENSPEMG00000024881	Sox2 (ENSPEMG00000013974)	ENSPEMG00000026113	ENSPEMG00000006887	Fxr1 (ENSPEMG00000012962)	Ccdc39 (ENSPEMG00000017829)	Ttc14 (ENSPEMG00000013671)	Pex5l (ENSPEMG00000006300)	Usp13 (ENSPEMG00000001021)
Cricetinae	ANCESTRAL SPECIES	13	ENSGT00950000183055.b.a	ENSGT00940000157323	ENSGT00390000008458	ENSGT00940000161583	ENSGT00390000008984	ENSGT00940000162309	ENSGT00390000010494	ENSGT00390000003555	ENSGT00940000156842	ENSGT00640000091487	ENSGT01060000248588.a.c.b	ENSGT00390000012346	ENSGT00940000155372	ENSGT00950000183130.A	ENSGT00940000155988	ENSGT01070000253744.a.b #22	ENSGT00950000183169.C.d	ENSGT00940000157312	ENSGT00940000153661.a.a	ENSGT00940000156941	ENSGT00940000154552.b	ENSGT00940000156162.C.k	ENSGT00940000160614	ENSGT00940000154384.h.a	ENSGT00950000183189.a.b.a	ENSGT00390000015010	ENSGT00390000013701.g.b	ENSGT00390000013701.g.a	ENSGT00940000155931	ENSGT00940000157401	ENSGT00390000009980
Chinese hamster chok1gshd	DUPLICATION
Chinese hamster chok1gshd	MODERN SPECIES	258					Gprin3 (ENSCGRG00001013859)	Snca (ENSCGRG00001011668)	Mmrn1 (ENSCGRG00001017542)	ENSCGRG00001014804	ENSCGRG00001013438	Ccser1 (ENSCGRG00001009069)	ENSCGRG00001023084	Grid2 (ENSCGRG00001011880) #17	Atoh1 (ENSCGRG00001015957) #18	Smarcad1 (ENSCGRG00001015056) #20	Hpgds (ENSCGRG00001011770) #21	Qrfprl (ENSCGRG00001010782) #22	Tnip3 (ENSCGRG00001000396) #23	Ndnf (ENSCGRG00001021230) #24	Prdm5 (ENSCGRG00001010581) #25	4930544G11Rik (ENSCGRG00001013500)	Mad2l1 (ENSCGRG00001012165) #26	ENSCGRG00001015322 #27	ENSCGRG00001015231 #27	ENSCGRG00001011328 #27	ENSCGRG00001015392 #27	Gng12 (ENSCGRG00001009920) #28	GADD45A (ENSCGRG00001022826) #29	ENSCGRG00001016800 #30	ENSCGRG00001022516 #31	Il23r (ENSCGRG00001014663) #32	Tacstd2 (ENSCGRG00001014553) #33
Chinese hamster chok1gshd	MODERN SPECIES	352	Spry1 (ENSCGRG00001009131)	Spata5 (ENSCGRG00001021381)	Nudt6 (ENSCGRG00001018080)	Fgf2 (ENSCGRG00001019372)	Bbs12 (ENSCGRG00001004097)	Cetn4 (ENSCGRG00001014508)	Il21 (ENSCGRG00001022512)	Il2 (ENSCGRG00001020461)	Adad1 (ENSCGRG00001010493)	Bltp1 (ENSCGRG00001009244)	Trpc3 (ENSCGRG00001021196)	Bbs7 (ENSCGRG00001022476)	Ccna2 (ENSCGRG00001021415)	Exosc9 (ENSCGRG00001023030)	Anxa5 (ENSCGRG00001011395)	Qrfpr (ENSCGRG00001015065) #22	Zfp267 (ENSCGRG00001019794)	Acad9 (ENSCGRG00001017444)	ENSCGRG00001017668	Mccc1 (ENSCGRG00001012469)	ENSCGRG00001019778	ENSCGRG00001013592	Atp11b (ENSCGRG00001021308)	Sox2 (ENSCGRG00001008732)	ENSCGRG00001000090	Fxr1 (ENSCGRG00001024795)	Ccdc39 (ENSCGRG00001018347)	Ttc14 (ENSCGRG00001021605)	Pex5l (ENSCGRG00001018482)	Usp13 (ENSCGRG00001017123)	Ndufb5 (ENSCGRG00001005505)
Golden Hamster	DUPLICATION
Golden Hamster	MODERN SPECIES	675	ENSMAUG00000017964	Nap1l5 (ENSMAUG00000016101)	Fam13a (ENSMAUG00000019183)	Tigd2 (ENSMAUG00000000071)	Gprin3 (ENSMAUG00000000174)	ENSMAUG00000016044	Snca (ENSMAUG00000018763)	Mmrn1 (ENSMAUG00000000257)	ENSMAUG00000001236	Ccser1 (ENSMAUG00000001007)	Grid2 (ENSMAUG00000001680) #17	Atoh1 (ENSMAUG00000016206) #18	Smarcad1 (ENSMAUG00000008417) #20	Hpgds (ENSMAUG00000000292) #21	ENSMAUG00000001139	Qrfprl (ENSMAUG00000002934) #22	ENSMAUG00000005208	Tnip3 (ENSMAUG00000007890) #23	Ndnf (ENSMAUG00000010069) #24	Prdm5 (ENSMAUG00000006768) #25	4930544G11Rik (ENSMAUG00000016259)	Mad2l1 (ENSMAUG00000012179) #26	ENSMAUG00000019235 #27	Gadd45a (ENSMAUG00000013029) #29	Serbp1 (ENSMAUG00000013517) #30	ENSMAUG00000012848 #31	Il23r (ENSMAUG00000014424) #32	Tacstd2 (ENSMAUG00000016395) #33	ENSMAUG00000016422	ENSMAUG00000014450	ENSMAUG00000016790
Golden Hamster	MODERN SPECIES	636	Spry1 (ENSMAUG00000016633)	Spata5 (ENSMAUG00000012654)	Nudt6 (ENSMAUG00000015235)	Fgf2 (ENSMAUG00000014645)	Bbs12 (ENSMAUG00000014987)	Cetn4 (ENSMAUG00000000102)	Il21 (ENSMAUG00000000414)	Il2 (ENSMAUG00000017109)	Adad1 (ENSMAUG00000018314)	Bltp1 (ENSMAUG00000017326)	ENSMAUG00000009808	Bbs7 (ENSMAUG00000001973)	Ccna2 (ENSMAUG00000018247)	Exosc9 (ENSMAUG00000008629)	Anxa5 (ENSMAUG00000014445)	Qrfpr (ENSMAUG00000016873) #22	Zfp267 (ENSMAUG00000000240)	Acad9 (ENSMAUG00000013695)	ENSMAUG00000011985	ENSMAUG00000000987	Mccc1 (ENSMAUG00000018926)	ENSMAUG00000019275	ENSMAUG00000018021	Atp11b (ENSMAUG00000000325)	Sox2 (ENSMAUG00000017052)	ENSMAUG00000011285	Fxr1 (ENSMAUG00000001188)	Ccdc39 (ENSMAUG00000009369)	ENSMAUG00000000140	ENSMAUG00000009258	Pex5l (ENSMAUG00000011108)
Murinae	ANCESTRAL SPECIES	4	ENSGT00960000190929	ENSGT00940000156633	ENSGT00940000160729.g	ENSGT00940000158189	ENSGT00730000111564	ENSGT00950000183033.a.b.a	ENSGT00940000162273	ENSGT00570000079168.b.b.b	ENSGT00950000183175.B.b	ENSGT01030000234633.C.b	ENSGT00940000153912.B	ENSGT00940000155192 #17	ENSGT00940000160064.b #18	ENSGT00910000144252 #20	ENSGT00940000160278 #21	ENSGT01070000253744.a.b #22	ENSGT00510000046908.a.a.b #23	ENSGT00390000007586.a.b #24	ENSGT00940000158340 #25	ENSGT00940000163656	ENSGT00940000153395.a #26	ENSGT01030000234553.b.b.d.c.a.o.a.a.a.a.a #27	ENSGT01100000263497.E.b #28	ENSGT00950000182964.a.a #29	ENSGT00520000055591.a #30	ENSGT00940000159829 #31	ENSGT00530000064198 #32	ENSGT00390000018245.d #33	ENSGT00940000153094.n	ENSGT00940000163478	ENSGT00390000004352
Mus	ANCESTRAL SPECIES	12	ENSGT00960000190929	ENSGT00940000156633	ENSGT00940000160729.g	ENSGT00940000158189	ENSGT00730000111564	ENSGT00950000183033.a.b.a	ENSGT00940000162273	ENSGT00570000079168.b.b.b	ENSGT00950000183175.B.b	ENSGT01030000234633.C.b	ENSGT00940000153912.B	ENSGT00940000155192 #17	ENSGT00940000160064.b #18	ENSGT00910000144252 #20	ENSGT00940000160278 #21	ENSGT01070000253744.a.b #22	ENSGT00510000046908.a.a.b #23	ENSGT00390000007586.a.b #24	ENSGT00940000158340 #25	ENSGT00940000163656	ENSGT00940000153395.a #26	ENSGT01030000234553.b.b.d.c.a.o.a.a.a.a.a #27	ENSGT01100000263497.E.b #28	ENSGT00950000182964.a.a #29	ENSGT00520000055591.a #30	ENSGT00940000159829 #31	ENSGT00530000064198 #32	ENSGT00390000018245.d #33	ENSGT00950000186518	ENSGT00950000186487	ENSGT00950000186503
Shrew mouse	DUPLICATION
Shrew mouse	MODERN SPECIES	11	Vopp1 (MGP_PahariEiJ_G0022185)	Vmn1r21 (MGP_PahariEiJ_G0022186) #27	Abcg2 (MGP_PahariEiJ_G0022187)	Herc3 (MGP_PahariEiJ_G0022188)	Nap1l5 (MGP_PahariEiJ_G0022189)	Fam13a (MGP_PahariEiJ_G0022190)	Tigd2 (MGP_PahariEiJ_G0022191)	Gprin3 (MGP_PahariEiJ_G0022192)	Snca (MGP_PahariEiJ_G0022193)	Mmrn1 (MGP_PahariEiJ_G0022194)	Ccser1 (MGP_PahariEiJ_G0022195)	Grid2 (MGP_PahariEiJ_G0022196) #17	Atoh1 (MGP_PahariEiJ_G0022197) #18	Smarcad1 (MGP_PahariEiJ_G0022198) #20	Hpgds (MGP_PahariEiJ_G0022199) #21	Qrfprl (MGP_PahariEiJ_G0022200) #22	MGP_PahariEiJ_G0022201 #23	Ndnf (MGP_PahariEiJ_G0022202) #24	Prdm5 (MGP_PahariEiJ_G0022203) #25	4930544G11Rik (MGP_PahariEiJ_G0022204)	Mad2l1 (MGP_PahariEiJ_G0022205) #26	Gng12 (MGP_PahariEiJ_G0022206) #28	Gadd45a (MGP_PahariEiJ_G0022207) #29	Serbp1 (MGP_PahariEiJ_G0022208) #30	Il12rb2 (MGP_PahariEiJ_G0022209) #31	Il23r (MGP_PahariEiJ_G0022210) #32	Tacstd2 (MGP_PahariEiJ_G0022211) #33	Igkj1 (MGP_PahariEiJ_G0000020)	Igkj2 (MGP_PahariEiJ_G0000021)	MGP_PahariEiJ_G0000022	Igkj4 (MGP_PahariEiJ_G0000023)
Shrew mouse	MODERN SPECIES	17	Spata5 (MGP_PahariEiJ_G0026391)	Nudt6 (MGP_PahariEiJ_G0026390)	Fgf2 (MGP_PahariEiJ_G0026389)	Bbs12 (MGP_PahariEiJ_G0026388)	Cetn4 (MGP_PahariEiJ_G0026387)	Il21 (MGP_PahariEiJ_G0026386)	Il2 (MGP_PahariEiJ_G0026385)	Adad1 (MGP_PahariEiJ_G0026384)	Bltp1 (MGP_PahariEiJ_G0026383)	Trpc3 (MGP_PahariEiJ_G0026382)	Bbs7 (MGP_PahariEiJ_G0026381)	Ccna2 (MGP_PahariEiJ_G0026380)	Exosc9 (MGP_PahariEiJ_G0026379)	MGP_PahariEiJ_G0026378	Anxa5 (MGP_PahariEiJ_G0026377)	Qrfpr (MGP_PahariEiJ_G0026376) #22	Zfp267 (MGP_PahariEiJ_G0026375)	MGP_PahariEiJ_G0026374	Sox2 (MGP_PahariEiJ_G0026373)	Dnajc19 (MGP_PahariEiJ_G0026372)	Fxr1 (MGP_PahariEiJ_G0026371)	MGP_PahariEiJ_G0026370	Pex5l (MGP_PahariEiJ_G0026369)	Usp13 (MGP_PahariEiJ_G0026368)	Ndufb5 (MGP_PahariEiJ_G0026367)	Mrpl47 (MGP_PahariEiJ_G0026366)	Actl6a (MGP_PahariEiJ_G0026365)	Gnb4 (MGP_PahariEiJ_G0026364)	Mfn1 (MGP_PahariEiJ_G0026363)	Zfp639 (MGP_PahariEiJ_G0026362)	Kcnmb3 (MGP_PahariEiJ_G0026361)
Mus_A	ANCESTRAL SPECIES	7	ENSGT00960000190929	ENSGT00940000156633	ENSGT00940000160729.g	ENSGT00940000158189	ENSGT00730000111564	ENSGT00950000183033.a.b.a	ENSGT00940000162273	ENSGT00570000079168.b.b.b	ENSGT00950000183175.B.b	ENSGT01030000234633.C.b	ENSGT00940000153912.B	ENSGT00940000155192 #17	ENSGT00940000160064.b #18	ENSGT00910000144252 #20	ENSGT00940000160278 #21	ENSGT01070000253744.a.b #22	ENSGT00510000046908.a.a.b #23	ENSGT00390000007586.a.b #24	ENSGT00940000158340 #25	ENSGT00940000163656	ENSGT00940000153395.a #26	ENSGT01030000234553.b.b.d.c.a.o.a.a.a.a.a.b #27	ENSGT01030000234553.b.b.d.c.a.o.a.a.a.a.a.a.b.b.a #27	ENSGT01030000234553.b.b.d.c.a.o.a.a.a.a.a.a.b.b.b #27	ENSGT01100000263497.E.b #28	ENSGT00950000182964.a.a #29	ENSGT00520000055591.a #30	ENSGT00940000159829 #31	ENSGT00530000064198 #32	ENSGT00390000018245.d #33	ENSGT00940000154279.e.b.c.b.b
Mus_B	ANCESTRAL SPECIES	20	ENSGT01030000234553.b.b.d.c.a.o.b.a.a.b.b #27	ENSGT01030000234553.b.b.d.c.a.o.a.a.a.a.b.a.b #27	ENSGT00940000160729.g	ENSGT00940000158189	ENSGT00730000111564	ENSGT00950000183033.a.b.a	ENSGT00940000162273	ENSGT00570000079168.b.b.b	ENSGT00950000183175.B.b	ENSGT01030000234633.C.b	ENSGT00940000153912.B	ENSGT00940000155192 #17	ENSGT00940000160064.b #18	ENSGT00910000144252 #20	ENSGT00940000160278 #21	ENSGT01070000253744.a.b #22	ENSGT00510000046908.a.a.b #23	ENSGT00390000007586.a.b #24	ENSGT00940000158340 #25	ENSGT00940000163656	ENSGT00940000153395.a #26	ENSGT01030000234553.b.b.d.c.a.o.a.a.a.a.a.b #27	ENSGT01030000234553.b.b.d.c.a.o.a.a.a.a.a.a.b.a #27	ENSGT01030000234553.b.b.d.c.a.o.a.a.a.a.a.a.a.b #27	ENSGT01030000234553.b.b.d.c.a.o.a.a.a.a.a.a.a.a.a #27	ENSGT01030000234553.b.b.d.c.a.o.a.a.a.a.a.a.b.b.a #27	ENSGT01030000234553.b.b.d.c.a.o.a.a.a.a.a.a.b.b.b #27	ENSGT01100000263497.E.b #28	ENSGT00950000182964.a.a #29	ENSGT00520000055591.a #30	ENSGT00940000159829 #31
Mus_C	ANCESTRAL SPECIES	19	ENSGT01030000234553.b.b.d.c.a.o.b.a.a.b.a #27	ENSGT00940000160729.g	ENSGT00940000158189	ENSGT00730000111564	ENSGT00950000183033.a.b.a	ENSGT00940000162273	ENSGT00570000079168.b.b.b	ENSGT00840000132152.c.a.a	ENSGT00950000183175.B.b	ENSGT01030000234633.C.b	ENSGT00940000153912.B	ENSGT00940000155192 #17	ENSGT00940000160064.b #18	ENSGT00910000144252 #20	ENSGT00940000160278 #21	ENSGT01070000253744.a.b #22	ENSGT00510000046908.a.a.b #23	ENSGT00390000007586.a.b #24	ENSGT00940000158340 #25	ENSGT00940000163656	ENSGT00940000153395.a #26	ENSGT01030000234553.b.b.d.c.a.o.a.a.a.a.a.b #27	ENSGT01030000234553.b.b.d.c.a.o.a.a.a.a.a.a.b.a #27	ENSGT01030000234553.b.b.d.c.a.o.a.a.a.a.a.a.a.b #27	ENSGT01030000234553.b.b.d.c.a.o.a.a.a.a.a.a.a.a.a #27	ENSGT01030000234553.b.b.d.c.a.o.a.a.a.a.a.a.b.b.a #27	ENSGT01100000263497.E.b #28	ENSGT00950000182964.a.a #29	ENSGT00520000055591.a #30	ENSGT00940000159829 #31	ENSGT00530000064198 #32
Steppe mouse	DUPLICATION
Steppe mouse	MODERN SPECIES	2872															ENSMSIG00000004185	ENSMSIG00000004148 #22	Tnip3 (ENSMSIG00000004021) #23	ENSMSIG00000004013	Ndnf (ENSMSIG00000003987) #24	ENSMSIG00000003978	ENSMSIG00000003900 #25	4930544G11Rik (ENSMSIG00000003886)	ENSMSIG00000003860	ENSMSIG00000003837	Mad2l1 (ENSMSIG00000003777) #26	Vmn1r32 (ENSMSIG00000003768) #27	Vmn1r33 (ENSMSIG00000003765) #27	Vmn1r34 (ENSMSIG00000003740) #27	Vmn1r35 (ENSMSIG00000003722) #27	ENSMSIG00000003614 #27	Vmn1r39 (ENSMSIG00000003551) #27
Steppe mouse	MODERN SPECIES	2551																Qrfpr (ENSMSIG00000027255) #22	Zfp267 (ENSMSIG00000027264)	ENSMSIG00000027271	Acad9 (ENSMSIG00000027275)	ENSMSIG00000027289	ENSMSIG00000027323	Mccc1 (ENSMSIG00000027328)	ENSMSIG00000027365	Atp11b (ENSMSIG00000027378)
spretus	DUPLICATION
spretus	MODERN SPECIES	15	MGP_SPRETEiJ_G0029449 #27	MGP_SPRETEiJ_G0029450 #27	Herc3 (MGP_SPRETEiJ_G0029451)	Nap1l5 (MGP_SPRETEiJ_G0029452)	Fam13a (MGP_SPRETEiJ_G0029453)	Tigd2 (MGP_SPRETEiJ_G0029454)	Gprin3 (MGP_SPRETEiJ_G0029455)	MGP_SPRETEiJ_G0029456	Snca (MGP_SPRETEiJ_G0029457)	Mmrn1 (MGP_SPRETEiJ_G0029458)	Ccser1 (MGP_SPRETEiJ_G0029459)	Grid2 (MGP_SPRETEiJ_G0029460) #17	Atoh1 (MGP_SPRETEiJ_G0029461) #18	Smarcad1 (MGP_SPRETEiJ_G0029462) #20	Hpgds (MGP_SPRETEiJ_G0029463) #21	Qrfprl (MGP_SPRETEiJ_G0029464) #22	MGP_SPRETEiJ_G0029465 #23	Ndnf (MGP_SPRETEiJ_G0029466) #24	Prdm5 (MGP_SPRETEiJ_G0029467) #25	4930544G11Rik (MGP_SPRETEiJ_G0029468)	Mad2l1 (MGP_SPRETEiJ_G0029469) #26	MGP_SPRETEiJ_G0029470 #27	MGP_SPRETEiJ_G0029471 #27	MGP_SPRETEiJ_G0029472 #27	MGP_SPRETEiJ_G0029473 #27	Vmn1r38 (MGP_SPRETEiJ_G0029474) #27	Gng12 (MGP_SPRETEiJ_G0029475) #28	Gadd45a (MGP_SPRETEiJ_G0029476) #29	Serbp1 (MGP_SPRETEiJ_G0029477) #30	Il12rb2 (MGP_SPRETEiJ_G0029478) #31	Il23r (MGP_SPRETEiJ_G0029479) #32
spretus	MODERN SPECIES	12	Spata5 (MGP_SPRETEiJ_G0025885)	Nudt6 (MGP_SPRETEiJ_G0025884)	Fgf2 (MGP_SPRETEiJ_G0025883)	Bbs12 (MGP_SPRETEiJ_G0025882)	Cetn4 (MGP_SPRETEiJ_G0025881)	Il21 (MGP_SPRETEiJ_G0025880)	Il2 (MGP_SPRETEiJ_G0025879)	MGP_SPRETEiJ_G0025878	MGP_SPRETEiJ_G0025877	Trpc3 (MGP_SPRETEiJ_G0025876)	Bbs7 (MGP_SPRETEiJ_G0025875)	Ccna2 (MGP_SPRETEiJ_G0025874)	Exosc9 (MGP_SPRETEiJ_G0025873)	MGP_SPRETEiJ_G0025872	Anxa5 (MGP_SPRETEiJ_G0025871)	Qrfpr (MGP_SPRETEiJ_G0025870) #22	Zfp267 (MGP_SPRETEiJ_G0025869)	Acad9 (MGP_SPRETEiJ_G0025868)	MGP_SPRETEiJ_G0025867	Mccc1 (MGP_SPRETEiJ_G0025866)	MGP_SPRETEiJ_G0025865	Atp11b (MGP_SPRETEiJ_G0025864)	Sox2 (MGP_SPRETEiJ_G0025863)	Dnajc19 (MGP_SPRETEiJ_G0025862)	Fxr1 (MGP_SPRETEiJ_G0025861)	Ccdc39 (MGP_SPRETEiJ_G0025860)	Ttc14 (MGP_SPRETEiJ_G0025859)	Pex5l (MGP_SPRETEiJ_G0025858)	Usp13 (MGP_SPRETEiJ_G0025857)	Ndufb5 (MGP_SPRETEiJ_G0025856)	Mrpl47 (MGP_SPRETEiJ_G0025855)
Mouse	DUPLICATION
Mouse	MODERN SPECIES	15	Vmn1r30 (ENSMUSG00000095670) #27	Vmn1r31 (ENSMUSG00000115404) #27	Abcg2 (ENSMUSG00000029802)	Herc3 (ENSMUSG00000029804)	Nap1l5 (ENSMUSG00000055430)	Fam13a (ENSMUSG00000037709)	Tigd2 (ENSMUSG00000049232)	Gprin3 (ENSMUSG00000045441)	Snca (ENSMUSG00000025889)	Mmrn1 (ENSMUSG00000054641)	Ccser1 (ENSMUSG00000039578)	Grid2 (ENSMUSG00000071424) #17	Atoh1 (ENSMUSG00000073043) #18	Smarcad1 (ENSMUSG00000029920) #20	Hpgds (ENSMUSG00000029919) #21	Qrfprl (ENSMUSG00000029917) #22	Tnip3 (ENSMUSG00000044162) #23	Ndnf (ENSMUSG00000049001) #24	Prdm5 (ENSMUSG00000029913) #25	4930544G11Rik (ENSMUSG00000036463)	Mad2l1 (ENSMUSG00000029910) #26	Vmn1r32 (ENSMUSG00000062905) #27	Vmn1r33 (ENSMUSG00000059375) #27	Vmn1r34 (ENSMUSG00000091012) #27	Vmn1r35 (ENSMUSG00000060699) #27	Vmn1r36 (ENSMUSG00000115482) #27	Vmn1r37 (ENSMUSG00000115467) #27	Vmn1r38 (ENSMUSG00000115170) #27	Vmn1r39 (ENSMUSG00000093755) #27	Gng12 (ENSMUSG00000036402) #28	Gadd45a (ENSMUSG00000036390) #29
Mouse	MODERN SPECIES	12	Nudt6 (ENSMUSG00000050174)	Fgf2 (ENSMUSG00000037225)	Bbs12 (ENSMUSG00000051444)	Cetn4 (ENSMUSG00000045031)	Il21 (ENSMUSG00000027718)	Il2 (ENSMUSG00000027720)	Adad1 (ENSMUSG00000027719)	Bltp1 (ENSMUSG00000037270)	Trpc3 (ENSMUSG00000027716)	Bbs7 (ENSMUSG00000037325)	Ccna2 (ENSMUSG00000027715)	Exosc9 (ENSMUSG00000027714)	Smim43 (ENSMUSG00000085007)	1810062G17Rik (ENSMUSG00000027713)	Anxa5 (ENSMUSG00000027712)	Qrfpr (ENSMUSG00000058400) #22	Zfp267 (ENSMUSG00000033883)	Acad9 (ENSMUSG00000027710)	Ccdc144b (ENSMUSG00000047696)	Mccc1 (ENSMUSG00000027709)	Dcun1d1 (ENSMUSG00000027708)	Atp11b (ENSMUSG00000037400)	Sox2 (ENSMUSG00000074637)	Dnajc19 (ENSMUSG00000027679)	Fxr1 (ENSMUSG00000027680)	Ccdc39 (ENSMUSG00000027676)	Ttc14 (ENSMUSG00000027677)	Pex5l (ENSMUSG00000027674)	Usp13 (ENSMUSG00000056900)	Ndufb5 (ENSMUSG00000027673)	Mrpl47 (ENSMUSG00000037531)
Ryukyu mouse	DUPLICATION
Ryukyu mouse	MODERN SPECIES	15	Ppm1k (MGP_CAROLIEiJ_G0028445)	Abcg2 (MGP_CAROLIEiJ_G0028446)	Herc3 (MGP_CAROLIEiJ_G0028447)	Nap1l5 (MGP_CAROLIEiJ_G0028448)	Fam13a (MGP_CAROLIEiJ_G0028449)	Tigd2 (MGP_CAROLIEiJ_G0028450)	Gprin3 (MGP_CAROLIEiJ_G0028451)	Snca (MGP_CAROLIEiJ_G0028452)	Mmrn1 (MGP_CAROLIEiJ_G0028453)	Ccser1 (MGP_CAROLIEiJ_G0028454)	Grid2 (MGP_CAROLIEiJ_G0028455) #17	MGP_CAROLIEiJ_G0028456	Atoh1 (MGP_CAROLIEiJ_G0028457) #18	MGP_CAROLIEiJ_G0028458 #20	Hpgds (MGP_CAROLIEiJ_G0028459) #21	Qrfprl (MGP_CAROLIEiJ_G0028460) #22	Tnip3 (MGP_CAROLIEiJ_G0028461) #23	Ndnf (MGP_CAROLIEiJ_G0028462) #24	Prdm5 (MGP_CAROLIEiJ_G0028463) #25	4930544G11Rik (MGP_CAROLIEiJ_G0028464)	Mad2l1 (MGP_CAROLIEiJ_G0028465) #26	Vmn1r32 (MGP_CAROLIEiJ_G0028466) #27	Vmn1r38 (MGP_CAROLIEiJ_G0028467) #27	MGP_CAROLIEiJ_G0028468 #27	MGP_CAROLIEiJ_G0028469 #27	Gng12 (MGP_CAROLIEiJ_G0028470) #28	Gadd45a (MGP_CAROLIEiJ_G0028471) #29	Serbp1 (MGP_CAROLIEiJ_G0028472) #30	Il12rb2 (MGP_CAROLIEiJ_G0028473) #31	Il23r (MGP_CAROLIEiJ_G0028474) #32	Tacstd2 (MGP_CAROLIEiJ_G0028475) #33
Ryukyu mouse	MODERN SPECIES	12	Spata5 (MGP_CAROLIEiJ_G0024951)	Nudt6 (MGP_CAROLIEiJ_G0024950)	Fgf2 (MGP_CAROLIEiJ_G0024949)	Bbs12 (MGP_CAROLIEiJ_G0024948)	Cetn4 (MGP_CAROLIEiJ_G0024947)	Il21 (MGP_CAROLIEiJ_G0024946)	Il2 (MGP_CAROLIEiJ_G0024945)	Adad1 (MGP_CAROLIEiJ_G0024944)	Bltp1 (MGP_CAROLIEiJ_G0024943)	Trpc3 (MGP_CAROLIEiJ_G0024942)	Bbs7 (MGP_CAROLIEiJ_G0024941)	Ccna2 (MGP_CAROLIEiJ_G0024940)	Exosc9 (MGP_CAROLIEiJ_G0024939)	MGP_CAROLIEiJ_G0024938	Anxa5 (MGP_CAROLIEiJ_G0024937)	Qrfpr (MGP_CAROLIEiJ_G0024936) #22	Zfp267 (MGP_CAROLIEiJ_G0024935)	MGP_CAROLIEiJ_G0024934	MGP_CAROLIEiJ_G0024933	Mccc1 (MGP_CAROLIEiJ_G0024932)	MGP_CAROLIEiJ_G0024931	Atp11b (MGP_CAROLIEiJ_G0024930)	Sox2 (MGP_CAROLIEiJ_G0024929)	MGP_CAROLIEiJ_G0024928	Fxr1 (MGP_CAROLIEiJ_G0024927)	Ccdc39 (MGP_CAROLIEiJ_G0024926)	Ttc14 (MGP_CAROLIEiJ_G0024925)	Pex5l (MGP_CAROLIEiJ_G0024924)	Usp13 (MGP_CAROLIEiJ_G0024923)	Ndufb5 (MGP_CAROLIEiJ_G0024922)	Mrpl47 (MGP_CAROLIEiJ_G0024921)
Rat	DUPLICATION
Rat	MODERN SPECIES	14	ENSRNOG00000069908	AABR07060694.1 (ENSRNOG00000057158)	AABR07060700.1 (ENSRNOG00000060808)	ENSRNOG00000066882	ENSRNOG00000068395	ENSRNOG00000066361	Snca (ENSRNOG00000008656)	Mmrn1 (ENSRNOG00000024986)	Ccser1 (ENSRNOG00000029321)	AABR07060778.1 (ENSRNOG00000005630)	ENSRNOG00000066686	Grid2 (ENSRNOG00000006174) #17	Atoh1 (ENSRNOG00000006383) #18	Smarcad1 (ENSRNOG00000006391) #20	Hpgds (ENSRNOG00000006583) #21	Qrfprl (ENSRNOG00000006782) #22	Tnip3 (ENSRNOG00000064111) #23	Ndnf (ENSRNOG00000006857) #24	Prdm5 (ENSRNOG00000023679) #25	RSA-14-44 (ENSRNOG00000042954)	ENSRNOG00000069727	Mad2l1 (ENSRNOG00000005376) #26	Vom1r89 (ENSRNOG00000070369) #27	Gng12 (ENSRNOG00000050231) #28	Gadd45a (ENSRNOG00000005615) #29	Serbp1 (ENSRNOG00000005890) #30	Il12rb2 (ENSRNOG00000007270) #31	Il23r (ENSRNOG00000007544) #32	Tacstd2 (ENSRNOG00000007740) #33	ENSRNOG00000064041	ENSRNOG00000068649
Rat	MODERN SPECIES	11	Spata5 (ENSRNOG00000017462)	Nudt6 (ENSRNOG00000017420)	Fgf2 (ENSRNOG00000017392)	Bbs12 (ENSRNOG00000068263)	Cetn4 (ENSRNOG00000026162)	Il21 (ENSRNOG00000017376)	Il2 (ENSRNOG00000017348)	Adad1 (ENSRNOG00000017246)	Bltp1 (ENSRNOG00000038436)	Trpc3 (ENSRNOG00000016070)	Bbs7 (ENSRNOG00000015816)	Ccna2 (ENSRNOG00000015423)	Exosc9 (ENSRNOG00000014674)	Smim43 (ENSRNOG00000070831)	Anxa5 (ENSRNOG00000014453)	Qrfpr (ENSRNOG00000014414) #22	Arsl (ENSRNOG00000028350)	ENSRNOG00000066024	Zfp267 (ENSRNOG00000042283)	Acad9 (ENSRNOG00000014178)	ENSRNOG00000065565	Ccdc144b (ENSRNOG00000056177)	Mccc1 (ENSRNOG00000013293)	Dcun1d1 (ENSRNOG00000012734)	Atp11b (ENSRNOG00000052116)	Sox2 (ENSRNOG00000012199)	Dnajc19 (ENSRNOG00000049819)	Fxr1 (ENSRNOG00000051480)	Ccdc39 (ENSRNOG00000011440)	Ttc14 (ENSRNOG00000011261)	Pex5l (ENSRNOG00000011211)
Upper Galilee mountains blind mole rat	MODERN SPECIES	1276	ENSNGAG00000002047	Abcg2 (ENSNGAG00000008703)	Nap1l5 (ENSNGAG00000019469)	Herc3 (ENSNGAG00000001945)	Fam13a (ENSNGAG00000016431)	Tigd2 (ENSNGAG00000013979)	Gprin3 (ENSNGAG00000000029)	Snca (ENSNGAG00000017413)	Mmrn1 (ENSNGAG00000013643)	ENSNGAG00000014274	ENSNGAG00000012453	Grid2 (ENSNGAG00000018830) #17	Atoh1 (ENSNGAG00000017323) #18	Smarcad1 (ENSNGAG00000000810) #20	Hpgds (ENSNGAG00000012687) #21	Qrfprl (ENSNGAG00000010835) #22	Tnip3 (ENSNGAG00000013422) #23	Ndnf (ENSNGAG00000012166) #24	Prdm5 (ENSNGAG00000018317) #25	ENSNGAG00000020137	Mad2l1 (ENSNGAG00000019258) #26	ENSNGAG00000011475	Gng12 (ENSNGAG00000004651) #28	Gadd45a (ENSNGAG00000010577) #29	ENSNGAG00000019203 #30	ENSNGAG00000014083 #31	Il23r (ENSNGAG00000017497) #32
Lesser Egyptian jerboa	MODERN SPECIES	67	Cav1 (ENSJJAG00000021423)	Cav2 (ENSJJAG00000020789)	ENSJJAG00000019082	Tfec (ENSJJAG00000015649)	ENSJJAG00000012867 #19	Mdfic (ENSJJAG00000012683)	ENSJJAG00000016852	Ppp1r3a (ENSJJAG00000014929)	ENSJJAG00000012600	ENSJJAG00000011795	Grid2 (ENSJJAG00000010736) #17	Atoh1 (ENSJJAG00000001013) #18	ENSJJAG00000023468	Smarcad1 (ENSJJAG00000022342) #20	Hpgds (ENSJJAG00000020796) #21	Qrfprl (ENSJJAG00000017977) #22	ENSJJAG00000000554	Ndnf (ENSJJAG00000023194) #24	Prdm5 (ENSJJAG00000011464) #25	Mad2l1 (ENSJJAG00000019335) #26	ENSJJAG00000014666	Pde5a (ENSJJAG00000018246)	Fabp2 (ENSJJAG00000016393)	1810037I17Rik (ENSJJAG00000014222)	ENSJJAG00000019057	Myoz2 (ENSJJAG00000017680)	Synpo2 (ENSJJAG00000012840)	Sec24d (ENSJJAG00000009995)	Mettl14 (ENSJJAG00000010557)	Prss12 (ENSJJAG00000012007)	Ndst3 (ENSJJAG00000002218)
Kangaroo rat	MODERN SPECIES	379	Spry1 (ENSDORG00000014328)	Spata5 (ENSDORG00000000525)	Nudt6 (ENSDORG00000026866)	Fgf2 (ENSDORG00000027523)	ENSDORG00000013293	ENSDORG00000029033	Il21 (ENSDORG00000005664)	Il2 (ENSDORG00000014968)	Adad1 (ENSDORG00000015684)	Bltp1 (ENSDORG00000015310)	Trpc3 (ENSDORG00000015847)	Bbs7 (ENSDORG00000007687)	Ccna2 (ENSDORG00000007686)	Exosc9 (ENSDORG00000007684)	Anxa5 (ENSDORG00000006577)	Qrfpr (ENSDORG00000013419) #22	ENSDORG00000005102 #23	Ndnf (ENSDORG00000003957) #24	Prdm5 (ENSDORG00000007739) #25	Mad2l1 (ENSDORG00000000355) #26
Rodentia_A	ANCESTRAL SPECIES	24	ENSGT00940000157323	ENSGT00390000008458	ENSGT00940000161583	ENSGT00390000008984	ENSGT00940000162309	ENSGT00390000010494	ENSGT00390000003555	ENSGT00940000156842	ENSGT00640000091487	ENSGT01060000248588.a.c.b	ENSGT00390000012346	ENSGT00940000155372	ENSGT00950000183130.A	ENSGT01010000222815	ENSGT00940000155988	ENSGT01070000253744.a.b #22	ENSGT00510000046908.a.a.b #23	ENSGT00390000007586.a.b #24	ENSGT00940000158340 #25	ENSGT00940000153395.a #26	ENSGT00940000155475	ENSGT00800000124172	ENSGT00530000064570	ENSGT00940000156337	ENSGT00950000183027.b	ENSGT00950000183054.a.a.a	ENSGT00950000182924.A.b.a.b	ENSGT00550000075003	ENSGT00940000158131	ENSGT00940000160665	ENSGT00510000046470.a.a.a.d.b
Hystricomorpha	ANCESTRAL SPECIES	38	ENSGT00940000157323	ENSGT00390000008458	ENSGT00940000161583	ENSGT00390000008984	ENSGT00940000162309	ENSGT00390000010494	ENSGT00390000003555	ENSGT00940000156842	ENSGT00640000091487	ENSGT01060000248588.a.c.b	ENSGT00390000012346	ENSGT00940000155372	ENSGT00950000183130.A	ENSGT01010000222815	ENSGT00940000155988	ENSGT01070000253744.a.b #22	ENSGT00510000046908.a.a.b #23	ENSGT00390000007586.a.b #24	ENSGT00940000158340 #25	ENSGT00940000153395.a #26	ENSGT00940000155475	ENSGT00800000124172	ENSGT00530000064570	ENSGT00940000156337	ENSGT00950000183027.b	ENSGT00950000183054.a.a.a	ENSGT00950000182924.A.b.a.b	ENSGT00550000075003	ENSGT00940000158131	ENSGT00940000160665	ENSGT00510000046470.a.a.a.d.b
Hystricomorpha_a	ANCESTRAL SPECIES	34	ENSGT00950000183055.b.a	ENSGT00940000157323	ENSGT00390000008458	ENSGT00940000161583	ENSGT00390000008984	ENSGT00940000162309	ENSGT00390000010494	ENSGT00390000003555	ENSGT00940000156842	ENSGT00640000091487	ENSGT01060000248588.a.c.b	ENSGT00390000012346	ENSGT00940000155372	ENSGT00950000183130.A	ENSGT00940000155988	ENSGT01070000253744.a.b #22	ENSGT00510000046908.a.a.b #23	ENSGT00390000007586.a.b #24	ENSGT00940000158340 #25	ENSGT00940000153395.a #26	ENSGT00940000155475	ENSGT00800000124172	ENSGT00530000064570	ENSGT00940000156337	ENSGT00950000183027.b	ENSGT00950000183054.a.a.a	ENSGT00950000182924.A.b.a.b	ENSGT00550000075003	ENSGT00940000158131	ENSGT00940000160665	ENSGT00510000046470.a.a.a.d.b
Hystricomorpha_b	ANCESTRAL SPECIES	75	ENSGT00950000183055.b.a	ENSGT00940000157323	ENSGT00390000008458	ENSGT00940000161583	ENSGT00390000008984	ENSGT00940000162309	ENSGT00390000010494	ENSGT00390000003555	ENSGT00940000156842	ENSGT00640000091487	ENSGT01060000248588.a.c.b	ENSGT00390000012346	ENSGT00940000155372	ENSGT00950000183130.A	ENSGT00940000155988	ENSGT01070000253744.a.b #22	ENSGT00510000046908.a.a.b #23	ENSGT00390000007586.a.b #24	ENSGT00940000158340 #25	ENSGT00940000153395.a #26	ENSGT00940000155475	ENSGT00800000124172	ENSGT00530000064570	ENSGT00940000156337	ENSGT00950000183027.b	ENSGT00950000183054.a.a.a	ENSGT00950000182924.A.b.a.b	ENSGT00550000075003	ENSGT00940000158131	ENSGT00940000160665	ENSGT00510000046470.a.a.a.d.b
Long-tailed chinchilla	MODERN SPECIES	135	SPATA5 (ENSCLAG00000005265)	NUDT6 (ENSCLAG00000006306)	FGF2 (ENSCLAG00000003340)	ENSCLAG00000008111	BBS12 (ENSCLAG00000017705)	IL21 (ENSCLAG00000009098)	IL2 (ENSCLAG00000009317)	ADAD1 (ENSCLAG00000004688)	BLTP1 (ENSCLAG00000007818)	TRPC3 (ENSCLAG00000003574)	BBS7 (ENSCLAG00000004340)	CCNA2 (ENSCLAG00000003880)	EXOSC9 (ENSCLAG00000004644)	ANXA5 (ENSCLAG00000004278)	ENSCLAG00000005382	QRFPR (ENSCLAG00000006789) #22	TNIP3 (ENSCLAG00000004304) #23	NDNF (ENSCLAG00000004819) #24	PRDM5 (ENSCLAG00000005392) #25	ENSCLAG00000003295	MAD2L1 (ENSCLAG00000003756) #26	PDE5A (ENSCLAG00000004806)	FABP2 (ENSCLAG00000004293)	C4orf3 (ENSCLAG00000005064)	USP53 (ENSCLAG00000005403)	MYOZ2 (ENSCLAG00000003567)	SYNPO2 (ENSCLAG00000004412)	SEC24D (ENSCLAG00000009632)	METTL14 (ENSCLAG00000013189)	PRSS12 (ENSCLAG00000003330)	NDST3 (ENSCLAG00000004346)
Degu	MODERN SPECIES	237																QRFPR (ENSODEG00000011261) #22	ENSODEG00000009181 #23	NDNF (ENSODEG00000008963) #24	PRDM5 (ENSODEG00000009133) #25	MAD2L1 (ENSODEG00000008659) #26	ENSODEG00000009337	ENSODEG00000009724	PDE5A (ENSODEG00000009775)	FABP2 (ENSODEG00000009356)	ENSODEG00000009751	C4orf3 (ENSODEG00000009429)	MYOZ2 (ENSODEG00000010060)	SYNPO2 (ENSODEG00000008964)	ENSODEG00000009862	SEC24D (ENSODEG00000009782)	ENSODEG00000008761
Guinea pig	MODERN SPECIES	7	SPRY1 (ENSCPOG00000035769)	SPATA5 (ENSCPOG00000005397)	ENSCPOG00000030140	FGF2 (ENSCPOG00000005386)	BBS12 (ENSCPOG00000005539)	ENSCPOG00000021793	IL21 (ENSCPOG00000012431)	IL2 (ENSCPOG00000008265)	ADAD1 (ENSCPOG00000014455)	BLTP1 (ENSCPOG00000010581)	TRPC3 (ENSCPOG00000001231)	BBS7 (ENSCPOG00000001229)	CCNA2 (ENSCPOG00000010373)	EXOSC9 (ENSCPOG00000034344)	ANXA5 (ENSCPOG00000038586)	QRFPR (ENSCPOG00000001530) #22	TNIP3 (ENSCPOG00000003813) #23	NDNF (ENSCPOG00000009703) #24	PRDM5 (ENSCPOG00000012883) #25	MAD2L1 (ENSCPOG00000030145) #26	PDE5A (ENSCPOG00000008756)	FABP2 (ENSCPOG00000008750)	C4orf3 (ENSCPOG00000021561)	ENSCPOG00000001323	MYOZ2 (ENSCPOG00000007291)	SYNPO2 (ENSCPOG00000020548)	SEC24D (ENSCPOG00000004621)	METTL14 (ENSCPOG00000037880)	PRSS12 (ENSCPOG00000010027)	NDST3 (ENSCPOG00000003838)
Naked mole-rat female	MODERN SPECIES	22	SPATA5 (ENSHGLG00000002665)	NUDT6 (ENSHGLG00000040807)	ENSHGLG00000032095	ANKRD50 (ENSHGLG00000010124)	ENSHGLG00000010627	ENSHGLG00000047556	ENSHGLG00000003394	ENSHGLG00000003167	BBS7 (ENSHGLG00000002879)	ENSHGLG00000002599	EXOSC9 (ENSHGLG00000002467)	SMIM43 (ENSHGLG00000036790)	ENSHGLG00000035708	ENSHGLG00000038676	ENSHGLG00000002280	ENSHGLG00000004934 #22	ENSHGLG00000033298	TNIP3 (ENSHGLG00000003668) #23	NDNF (ENSHGLG00000003417) #24	PRDM5 (ENSHGLG00000003010) #25	ENSHGLG00000040170	ENSHGLG00000004064	ENSHGLG00000047434 #26	ENSHGLG00000000181	ENSHGLG00000049304	PDE5A (ENSHGLG00000000160)	ENSHGLG00000050894	USP53 (ENSHGLG00000047262)	ENSHGLG00000045384	MYOZ2 (ENSHGLG00000004531)	SYNPO2 (ENSHGLG00000038567)
Sciuridae	ANCESTRAL SPECIES	38	ENSGT00940000157323	ENSGT00390000008458	ENSGT00940000161583	ENSGT00390000008984	ENSGT00940000162309	ENSGT00390000010494	ENSGT00390000003555	ENSGT00940000156842	ENSGT00640000091487	ENSGT01060000248588.a.c.b	ENSGT00390000012346	ENSGT00940000155372	ENSGT00950000183130.A	ENSGT01010000222815	ENSGT00940000155988	ENSGT01070000253744.a.b #22	ENSGT00510000046908.a.a.b #23	ENSGT00390000007586.a.b #24	ENSGT00940000158340 #25	ENSGT00940000153395.a #26	ENSGT00940000155475	ENSGT00800000124172	ENSGT00940000156337	ENSGT00950000183027.b	ENSGT00950000183054.a.a.a	ENSGT01060000248649.a	ENSGT00950000182924.A.b.a.b	ENSGT00550000075003	ENSGT00940000158131	ENSGT00390000014067
Marmotini	ANCESTRAL SPECIES	45	ENSGT00940000157323	ENSGT00390000008458	ENSGT00940000161583	ENSGT00390000008984	ENSGT00940000162309	ENSGT00390000010494	ENSGT00390000003555	ENSGT00940000156842	ENSGT00640000091487	ENSGT01060000248588.a.c.b	ENSGT00390000012346	ENSGT00940000155372	ENSGT00950000183130.A	ENSGT01010000222815	ENSGT00940000155988	ENSGT01070000253744.a.b #22	ENSGT00510000046908.a.a.b #23	ENSGT00390000007586.a.b #24	ENSGT00940000158340 #25	ENSGT00940000153395.a #26
Alpin marmot	MODERN SPECIES	5	SPATA5 (ENSMMMG00000014189)	ENSMMMG00000014177	FGF2 (ENSMMMG00000014167)	BBS12 (ENSMMMG00000014165)	ENSMMMG00000014128	ENSMMMG00000014115	IL21 (ENSMMMG00000014088)	IL2 (ENSMMMG00000014074)	ADAD1 (ENSMMMG00000014047)	BLTP1 (ENSMMMG00000013870)	TRPC3 (ENSMMMG00000013843)	BBS7 (ENSMMMG00000013792)	CCNA2 (ENSMMMG00000013774)	EXOSC9 (ENSMMMG00000013752)	ANXA5 (ENSMMMG00000013732)	QRFPR (ENSMMMG00000013643) #22	ENSMMMG00000013612 #23	NDNF (ENSMMMG00000013604) #24	PRDM5 (ENSMMMG00000013584) #25	MAD2L1 (ENSMMMG00000013561) #26
Marmotini_b	ANCESTRAL SPECIES	148	ENSGT00940000157323	ENSGT00390000008458	ENSGT00940000161583	ENSGT00390000008984	ENSGT00940000162309	ENSGT00390000010494	ENSGT00390000003555	ENSGT00940000156842	ENSGT00640000091487	ENSGT01060000248588.a.c.b	ENSGT00390000012346	ENSGT00940000155372	ENSGT00950000183130.A	ENSGT01010000222815	ENSGT00940000155988	ENSGT01070000253744.a.b #22	ENSGT00510000046908.a.a.b #23	ENSGT00390000007586.a.b #24	ENSGT00940000158340 #25	ENSGT00940000153395.a #26
Arctic ground squirrel	MODERN SPECIES	504										TRPC3 (ENSUPAG00010003020)	BBS7 (ENSUPAG00010003036)	CCNA2 (ENSUPAG00010003078)	EXOSC9 (ENSUPAG00010003098)	SMIM43 (ENSUPAG00010003133)	ANXA5 (ENSUPAG00010003144)	QRFPR (ENSUPAG00010003178) #22	ENSUPAG00010003212 #23	NDNF (ENSUPAG00010003281) #24	PRDM5 (ENSUPAG00010003287) #25	MAD2L1 (ENSUPAG00010003371) #26
Squirrel	MODERN SPECIES	262	SPRY1 (ENSSTOG00000019856)	SPATA5 (ENSSTOG00000016252)	NUDT6 (ENSSTOG00000020437)	FGF2 (ENSSTOG00000028359)	BBS12 (ENSSTOG00000010337)	ENSSTOG00000024309	IL21 (ENSSTOG00000012108)	IL2 (ENSSTOG00000016100)	ADAD1 (ENSSTOG00000027523)	BLTP1 (ENSSTOG00000016095)	TRPC3 (ENSSTOG00000014731)	BBS7 (ENSSTOG00000026947)	CCNA2 (ENSSTOG00000008011)	EXOSC9 (ENSSTOG00000007984)	ANXA5 (ENSSTOG00000015236)	QRFPR (ENSSTOG00000011128) #22	ENSSTOG00000002218 #23	NDNF (ENSSTOG00000026308) #24	PRDM5 (ENSSTOG00000004741) #25	MAD2L1 (ENSSTOG00000025410) #26
Eurasian red squirrel	MODERN SPECIES	18	FGF2 (ENSSVLG00005016503)	BBS12 (ENSSVLG00005016487)	ENSSVLG00005016460	ENSSVLG00005016447	IL21 (ENSSVLG00005016343)	IL2 (ENSSVLG00005016296)	ENSSVLG00005016021	BLTP1 (ENSSVLG00005015963)	TRPC3 (ENSSVLG00005015770)	BBS7 (ENSSVLG00005015419)	CCNA2 (ENSSVLG00005015372)	ENSSVLG00005015214	SMIM43 (ENSSVLG00005015189)	ANXA5 (ENSSVLG00005014980)	ENSSVLG00005014925	QRFPR (ENSSVLG00005014858) #22	NDNF (ENSSVLG00005014362) #24	PRDM5 (ENSSVLG00005014293) #25	MAD2L1 (ENSSVLG00005014204) #26	ENSSVLG00005014083	PDE5A (ENSSVLG00005013841)	FABP2 (ENSSVLG00005013640)	USP53 (ENSSVLG00005013592)	MYOZ2 (ENSSVLG00005013483)	ENSSVLG00005013417	SEC24D (ENSSVLG00005013288)	METTL14 (ENSSVLG00005013085)	PRSS12 (ENSSVLG00005012955)	ENSSVLG00005012895	ENSSVLG00005012798	ENSSVLG00005012769