Mus_B	ANCESTRAL SPECIES	20	ENSGT01030000234553.b.b.d.c.a.o.b.a.a.b.b ##35	ENSGT01030000234553.b.b.d.c.a.o.a.a.a.a.b.a.b ##35	ENSGT00940000160729.g #9	ENSGT00940000158189 #10	ENSGT00730000111564 #11	ENSGT00950000183033.a.b.a #12	ENSGT00940000162273 #13	ENSGT00570000079168.b.b.b #14	ENSGT00950000183175.B.b #15	ENSGT01030000234633.C.b #16	ENSGT00940000153912.B #17	ENSGT00940000155192 #18	ENSGT00940000160064.b #19	ENSGT00910000144252 #20	ENSGT00940000160278 #21	ENSGT01070000253744.a.b #22	ENSGT00510000046908.a.a.b #23	ENSGT00390000007586.a.b #24	ENSGT00940000158340 #25	ENSGT00940000163656 #26	ENSGT00940000153395.a #27	ENSGT01030000234553.b.b.d.c.a.o.a.a.a.a.a.b #28	ENSGT01030000234553.b.b.d.c.a.o.a.a.a.a.a.a.b.a #29	ENSGT01030000234553.b.b.d.c.a.o.a.a.a.a.a.a.a.b #30	ENSGT01030000234553.b.b.d.c.a.o.a.a.a.a.a.a.a.a.a #31	ENSGT01030000234553.b.b.d.c.a.o.a.a.a.a.a.a.b.b.a #34	ENSGT01030000234553.b.b.d.c.a.o.a.a.a.a.a.a.b.b.b #35	ENSGT01100000263497.E.b #36	ENSGT00950000182964.a.a #37	ENSGT00520000055591.a	ENSGT00940000159829
Mouse	DUPLICATION
Mouse	MODERN SPECIES	15	Vmn1r30 (ENSMUSG00000095670) #7	Vmn1r31 (ENSMUSG00000115404) #8	Abcg2 (ENSMUSG00000029802) #9	Herc3 (ENSMUSG00000029804) #10	Nap1l5 (ENSMUSG00000055430) #11	Fam13a (ENSMUSG00000037709) #12	Tigd2 (ENSMUSG00000049232) #13	Gprin3 (ENSMUSG00000045441) #14	Snca (ENSMUSG00000025889) #15	Mmrn1 (ENSMUSG00000054641) #16	Ccser1 (ENSMUSG00000039578) #17	Grid2 (ENSMUSG00000071424) #18	Atoh1 (ENSMUSG00000073043) #19	Smarcad1 (ENSMUSG00000029920) #20	Hpgds (ENSMUSG00000029919) #21	Qrfprl (ENSMUSG00000029917) #22	Tnip3 (ENSMUSG00000044162) #23	Ndnf (ENSMUSG00000049001) #24	Prdm5 (ENSMUSG00000029913) #25	4930544G11Rik (ENSMUSG00000036463) #26	Mad2l1 (ENSMUSG00000029910) #27	Vmn1r32 (ENSMUSG00000062905) #28	Vmn1r33 (ENSMUSG00000059375) #29	Vmn1r34 (ENSMUSG00000091012) #30	Vmn1r35 (ENSMUSG00000060699) #31	Vmn1r36 (ENSMUSG00000115482) #32	Vmn1r37 (ENSMUSG00000115467) #33	Vmn1r38 (ENSMUSG00000115170) #34	Vmn1r39 (ENSMUSG00000093755) #35	Gng12 (ENSMUSG00000036402) #36	Gadd45a (ENSMUSG00000036390) #37
Mouse	MODERN SPECIES	12	Nudt6 (ENSMUSG00000050174)	Fgf2 (ENSMUSG00000037225)	Bbs12 (ENSMUSG00000051444)	Cetn4 (ENSMUSG00000045031)	Il21 (ENSMUSG00000027718)	Il2 (ENSMUSG00000027720)	Adad1 (ENSMUSG00000027719)	Bltp1 (ENSMUSG00000037270)	Trpc3 (ENSMUSG00000027716)	Bbs7 (ENSMUSG00000037325)	Ccna2 (ENSMUSG00000027715)	Exosc9 (ENSMUSG00000027714)	Smim43 (ENSMUSG00000085007)	1810062G17Rik (ENSMUSG00000027713)	Anxa5 (ENSMUSG00000027712)	Qrfpr (ENSMUSG00000058400) ##22	Zfp267 (ENSMUSG00000033883)	Acad9 (ENSMUSG00000027710)	Ccdc144b (ENSMUSG00000047696)	Mccc1 (ENSMUSG00000027709)	Dcun1d1 (ENSMUSG00000027708)	Atp11b (ENSMUSG00000037400)	Sox2 (ENSMUSG00000074637)	Dnajc19 (ENSMUSG00000027679)	Fxr1 (ENSMUSG00000027680)	Ccdc39 (ENSMUSG00000027676)	Ttc14 (ENSMUSG00000027677)	Pex5l (ENSMUSG00000027674)	Usp13 (ENSMUSG00000056900)	Ndufb5 (ENSMUSG00000027673)	Mrpl47 (ENSMUSG00000037531)
Mus_C	ANCESTRAL SPECIES	19	ENSGT01030000234553.b.b.d.c.a.o.b.a.a.b.a #7	ENSGT00940000160729.g #9	ENSGT00940000158189 #10	ENSGT00730000111564 #11	ENSGT00950000183033.a.b.a #12	ENSGT00940000162273 #13	ENSGT00570000079168.b.b.b #14	ENSGT00840000132152.c.a.a	ENSGT00950000183175.B.b #15	ENSGT01030000234633.C.b #16	ENSGT00940000153912.B #17	ENSGT00940000155192 #18	ENSGT00940000160064.b #19	ENSGT00910000144252 #20	ENSGT00940000160278 #21	ENSGT01070000253744.a.b #22	ENSGT00510000046908.a.a.b #23	ENSGT00390000007586.a.b #24	ENSGT00940000158340 #25	ENSGT00940000163656 #26	ENSGT00940000153395.a #27	ENSGT01030000234553.b.b.d.c.a.o.a.a.a.a.a.b #28	ENSGT01030000234553.b.b.d.c.a.o.a.a.a.a.a.a.b.a #29	ENSGT01030000234553.b.b.d.c.a.o.a.a.a.a.a.a.a.b #30	ENSGT01030000234553.b.b.d.c.a.o.a.a.a.a.a.a.a.a.a #31	ENSGT01030000234553.b.b.d.c.a.o.a.a.a.a.a.a.b.b.a #34	ENSGT01100000263497.E.b #36	ENSGT00950000182964.a.a #37	ENSGT00520000055591.a	ENSGT00940000159829	ENSGT00530000064198
Steppe mouse	DUPLICATION
Steppe mouse	MODERN SPECIES	2872															ENSMSIG00000004185	ENSMSIG00000004148 #22	Tnip3 (ENSMSIG00000004021) #23	ENSMSIG00000004013	Ndnf (ENSMSIG00000003987) #24	ENSMSIG00000003978	ENSMSIG00000003900 #25	4930544G11Rik (ENSMSIG00000003886) #26	ENSMSIG00000003860	ENSMSIG00000003837	Mad2l1 (ENSMSIG00000003777) #27	Vmn1r32 (ENSMSIG00000003768) #28	Vmn1r33 (ENSMSIG00000003765) #29	Vmn1r34 (ENSMSIG00000003740) #30	Vmn1r35 (ENSMSIG00000003722) #31	ENSMSIG00000003614 #33	Vmn1r39 (ENSMSIG00000003551) #35
Steppe mouse	MODERN SPECIES	2551																Qrfpr (ENSMSIG00000027255) #22	Zfp267 (ENSMSIG00000027264)	ENSMSIG00000027271	Acad9 (ENSMSIG00000027275)	ENSMSIG00000027289	ENSMSIG00000027323	Mccc1 (ENSMSIG00000027328)	ENSMSIG00000027365	Atp11b (ENSMSIG00000027378)
spretus	DUPLICATION
spretus	MODERN SPECIES	15	MGP_SPRETEiJ_G0029449 #8	MGP_SPRETEiJ_G0029450 #8	Herc3 (MGP_SPRETEiJ_G0029451) #10	Nap1l5 (MGP_SPRETEiJ_G0029452) #11	Fam13a (MGP_SPRETEiJ_G0029453) #12	Tigd2 (MGP_SPRETEiJ_G0029454) #13	Gprin3 (MGP_SPRETEiJ_G0029455) #14	MGP_SPRETEiJ_G0029456	Snca (MGP_SPRETEiJ_G0029457) #15	Mmrn1 (MGP_SPRETEiJ_G0029458) #16	Ccser1 (MGP_SPRETEiJ_G0029459) #17	Grid2 (MGP_SPRETEiJ_G0029460) #18	Atoh1 (MGP_SPRETEiJ_G0029461) #19	Smarcad1 (MGP_SPRETEiJ_G0029462) #20	Hpgds (MGP_SPRETEiJ_G0029463) #21	Qrfprl (MGP_SPRETEiJ_G0029464) #22	MGP_SPRETEiJ_G0029465 #23	Ndnf (MGP_SPRETEiJ_G0029466) #24	Prdm5 (MGP_SPRETEiJ_G0029467) #25	4930544G11Rik (MGP_SPRETEiJ_G0029468) #26	Mad2l1 (MGP_SPRETEiJ_G0029469) #27	MGP_SPRETEiJ_G0029470 #29	MGP_SPRETEiJ_G0029471 #29	MGP_SPRETEiJ_G0029472 #29	MGP_SPRETEiJ_G0029473 #29	Vmn1r38 (MGP_SPRETEiJ_G0029474) #34	Gng12 (MGP_SPRETEiJ_G0029475) #36	Gadd45a (MGP_SPRETEiJ_G0029476) #37	Serbp1 (MGP_SPRETEiJ_G0029477)	Il12rb2 (MGP_SPRETEiJ_G0029478)	Il23r (MGP_SPRETEiJ_G0029479)
spretus	MODERN SPECIES	12	Spata5 (MGP_SPRETEiJ_G0025885)	Nudt6 (MGP_SPRETEiJ_G0025884)	Fgf2 (MGP_SPRETEiJ_G0025883)	Bbs12 (MGP_SPRETEiJ_G0025882)	Cetn4 (MGP_SPRETEiJ_G0025881)	Il21 (MGP_SPRETEiJ_G0025880)	Il2 (MGP_SPRETEiJ_G0025879)	MGP_SPRETEiJ_G0025878	MGP_SPRETEiJ_G0025877	Trpc3 (MGP_SPRETEiJ_G0025876)	Bbs7 (MGP_SPRETEiJ_G0025875)	Ccna2 (MGP_SPRETEiJ_G0025874)	Exosc9 (MGP_SPRETEiJ_G0025873)	MGP_SPRETEiJ_G0025872	Anxa5 (MGP_SPRETEiJ_G0025871)	Qrfpr (MGP_SPRETEiJ_G0025870) #22	Zfp267 (MGP_SPRETEiJ_G0025869)	Acad9 (MGP_SPRETEiJ_G0025868)	MGP_SPRETEiJ_G0025867	Mccc1 (MGP_SPRETEiJ_G0025866)	MGP_SPRETEiJ_G0025865	Atp11b (MGP_SPRETEiJ_G0025864)	Sox2 (MGP_SPRETEiJ_G0025863)	Dnajc19 (MGP_SPRETEiJ_G0025862)	Fxr1 (MGP_SPRETEiJ_G0025861)	Ccdc39 (MGP_SPRETEiJ_G0025860)	Ttc14 (MGP_SPRETEiJ_G0025859)	Pex5l (MGP_SPRETEiJ_G0025858)	Usp13 (MGP_SPRETEiJ_G0025857)	Ndufb5 (MGP_SPRETEiJ_G0025856)	Mrpl47 (MGP_SPRETEiJ_G0025855)