Mus	ANCESTRAL SPECIES	22	ENSGT00990000203589.b.b #7	ENSGT00940000157310 #8	ENSGT00900000143364 #9	ENSGT00940000157603 #10	ENSGT00390000009710 #11	ENSGT00940000159952 #12	ENSGT00390000017026.c #13	ENSGT00940000157817 #14	ENSGT00940000164103 #15	ENSGT00730000111121 #16	ENSGT00390000001362 #17	ENSGT00940000161125 #18	ENSGT01050000244840.A.a.a #19	ENSGT01050000244840.A.a.b #20	ENSGT00950000183076.b #21	ENSGT01050000244840.A.b.b #22	ENSGT00950000182940.b.b #23	ENSGT00390000004454 #24	ENSGT00940000154170.A #25	ENSGT00940000156667 #26	ENSGT00940000155123.b #28	ENSGT00940000155305 #29	ENSGT00940000162618	ENSGT00940000159721 #30	ENSGT00510000048902.a #31	ENSGT00390000018706.m.b.b.f.b #32	ENSGT00550000074890 #33	ENSGT00390000008107.c.a #34	ENSGT00950000182983.B.a.b #35	ENSGT00940000155831 #36	ENSGT00390000004228 #37
Shrew mouse	MODERN SPECIES	2	Lhfpl2 (MGP_PahariEiJ_G0015863) #7	Scamp1 (MGP_PahariEiJ_G0015864) #8	MGP_PahariEiJ_G0015865 #9	Ap3b1 (MGP_PahariEiJ_G0015866) #10	Tbca (MGP_PahariEiJ_G0015867) #11	Otp (MGP_PahariEiJ_G0015868) #12	MGP_PahariEiJ_G0015869 #13	Pde8b (MGP_PahariEiJ_G0015870) #14	Zbed3 (MGP_PahariEiJ_G0015871) #15	Aggf1 (MGP_PahariEiJ_G0015872) #16	Crhbp (MGP_PahariEiJ_G0015873) #17	S100z (MGP_PahariEiJ_G0015874) #18	F2rl1 (MGP_PahariEiJ_G0015875) #19	F2r (MGP_PahariEiJ_G0015876) #20	Iqgap2 (MGP_PahariEiJ_G0015877) #21	F2rl2 (MGP_PahariEiJ_G0015878) #22	Sv2c (MGP_PahariEiJ_G0015879) #23	Poc5 (MGP_PahariEiJ_G0015880) #24	Ankdd1b (MGP_PahariEiJ_G0015881) #25	Polk (MGP_PahariEiJ_G0015882) #26	MGP_PahariEiJ_G0015883 #27	Cert1 (MGP_PahariEiJ_G0015884) #28	Hmgcr (MGP_PahariEiJ_G0015885) #29	Gcnt4 (MGP_PahariEiJ_G0015886) #30	Fam169a (MGP_PahariEiJ_G0015887) #31	Nsa2 (MGP_PahariEiJ_G0015888) #32	Gfm2 (MGP_PahariEiJ_G0015889) #33	Hexb (MGP_PahariEiJ_G0015890) #34	Enc1 (MGP_PahariEiJ_G0015891) #35	Arhgef28 (MGP_PahariEiJ_G0015892) #36	Utp15 (MGP_PahariEiJ_G0015893) #37
Mus_A	ANCESTRAL SPECIES	14	ENSGT00990000203589.b.b #7	ENSGT00940000157310 #8	ENSGT00900000143364 #9	ENSGT00940000157603 #10	ENSGT00390000009710 #11	ENSGT00940000159952 #12	ENSGT00390000017026.c #13	ENSGT00940000157817 #14	ENSGT00940000164103 #15	ENSGT00730000111121 #16	ENSGT00390000001362 #17	ENSGT00940000161125 #18	ENSGT01050000244840.A.a.a #19	ENSGT01050000244840.A.a.b #20	ENSGT00950000183076.b #21	ENSGT01050000244840.A.b.b #22	ENSGT00950000182940.b.b #23	ENSGT00390000004454 #24	ENSGT00940000154170.A #25	ENSGT00940000156667 #26	ENSGT00940000155123.b #28	ENSGT00940000155305 #29	ENSGT00940000162618	ENSGT00940000159721 #30	ENSGT00860000136215	ENSGT00510000048902.a #31	ENSGT00390000018706.m.a ##32	ENSGT00390000018706.m.b.b.f.b #32	ENSGT00550000074890 #33	ENSGT00390000008107.c.a #34	ENSGT00950000182983.B.a.b #35
Mus_B	ANCESTRAL SPECIES	13	ENSGT00990000203589.b.b #7	ENSGT00940000157310 #8	ENSGT00900000143364 #9	ENSGT00940000157603 #10	ENSGT00390000009710 #11	ENSGT00940000159952 #12	ENSGT00390000017026.c #13	ENSGT00940000157817 #14	ENSGT00940000164103 #15	ENSGT00730000111121 #16	ENSGT00390000001362 #17	ENSGT00940000161125 #18	ENSGT01050000244840.A.a.a #19	ENSGT01050000244840.A.a.b #20	ENSGT00950000183076.b #21	ENSGT01050000244840.A.b.b #22	ENSGT00950000182940.b.b #23	ENSGT00390000004454 #24	ENSGT00940000154170.A #25	ENSGT00940000156667 #26	ENSGT00940000155123.b #28	ENSGT00940000155305 #29	ENSGT00940000162618	ENSGT00940000159721 #30	ENSGT00860000136215	ENSGT00510000048902.a #31	ENSGT00390000018706.m.a ##32	ENSGT00550000074890 #33	ENSGT00390000008107.c.a #34	ENSGT00950000182983.B.a.b #35	ENSGT00940000155831 #36
Mouse	MODERN SPECIES	4	Arsb (ENSMUSG00000042082)	Lhfpl2 (ENSMUSG00000045312) #7	Scamp1 (ENSMUSG00000021687) #8	Ap3b1 (ENSMUSG00000021686) #10	Tbca (ENSMUSG00000042043) #11	Otp (ENSMUSG00000021685) #12	Wdr41 (ENSMUSG00000042015) ##13	Pde8b (ENSMUSG00000021684) #14	Zbed3 (ENSMUSG00000041995) #15	Aggf1 (ENSMUSG00000021681) #16	Crhbp (ENSMUSG00000021680) #17	S100z (ENSMUSG00000021679) #18	F2rl1 (ENSMUSG00000021678) #19	F2r (ENSMUSG00000048376) #20	Iqgap2 (ENSMUSG00000021676) #21	F2rl2 (ENSMUSG00000021675) #22	Sv2c (ENSMUSG00000051111) #23	Btf3l4b (ENSMUSG00000114133)	Poc5 (ENSMUSG00000021671) #24	Ankdd1b (ENSMUSG00000047117) #25	Polk (ENSMUSG00000021668) #26	Cert1 (ENSMUSG00000021669) #28	Hmgcr (ENSMUSG00000021670) #29	Ankrd31 (ENSMUSG00000109561)	Gcnt4 (ENSMUSG00000091387) #30	1700029F12Rik (ENSMUSG00000052075)	Fam169a (ENSMUSG00000041817) #31	Gm6169 (ENSMUSG00000057762)	Nsa2 (ENSMUSG00000060739) #32	Gfm2 (ENSMUSG00000021666) #33	Hexb (ENSMUSG00000021665) #34
Mus_C	ANCESTRAL SPECIES	10	ENSGT00990000203589.b.b #7	ENSGT00940000157310 #8	ENSGT00900000143364 #9	ENSGT00940000157603 #10	ENSGT00390000009710 #11	ENSGT00940000159952 #12	ENSGT00390000017026.c #13	ENSGT00940000157817 #14	ENSGT00940000164103 #15	ENSGT00730000111121 #16	ENSGT00390000001362 #17	ENSGT00940000161125 #18	ENSGT01050000244840.A.a.a #19	ENSGT01050000244840.A.a.b #20	ENSGT00950000183076.b #21	ENSGT01050000244840.A.b.b #22	ENSGT00950000182940.b.b #23	ENSGT00390000004454 #24	ENSGT00940000154170.A #25	ENSGT00940000156667 #26	ENSGT00940000155123.b #28	ENSGT00940000155305 #29	ENSGT00940000162618	ENSGT00940000159721 #30	ENSGT00860000136215	ENSGT00510000048902.a #31	ENSGT00390000018706.m.a ##32	ENSGT00550000074890 #33	ENSGT00390000008107.c.a #34	ENSGT00950000182983.B.a.b #35	ENSGT00940000155831 #36
Steppe mouse	MODERN SPECIES	3412	Dmgdh (ENSMSIG00000011670)	Arsb (ENSMSIG00000011652)	Lhfpl2 (ENSMSIG00000011618) #7	Scamp1 (ENSMSIG00000011596) #8	Ap3b1 (ENSMSIG00000011521) #10	ENSMSIG00000011491 #11	Otp (ENSMSIG00000011481) #12	ENSMSIG00000011421 #13	Pde8b (ENSMSIG00000011209) #14	ENSMSIG00000011178 #15	Aggf1 (ENSMSIG00000011146) #16	Crhbp (ENSMSIG00000011120) #17	S100z (ENSMSIG00000011096) #18	F2rl1 (ENSMSIG00000011086) #19	F2r (ENSMSIG00000011072) #20	F2rl2 (ENSMSIG00000011060) #22	Iqgap2 (ENSMSIG00000011044) #21
spretus	MODERN SPECIES	4	Lhfpl2 (MGP_SPRETEiJ_G0019669) #7	Scamp1 (MGP_SPRETEiJ_G0019670) #8	MGP_SPRETEiJ_G0019671 #9	Ap3b1 (MGP_SPRETEiJ_G0019672) #10	Tbca (MGP_SPRETEiJ_G0019673) #11	Otp (MGP_SPRETEiJ_G0019674) #12	MGP_SPRETEiJ_G0019675 #13	Pde8b (MGP_SPRETEiJ_G0019676) #14	Zbed3 (MGP_SPRETEiJ_G0019677) #15	Aggf1 (MGP_SPRETEiJ_G0019678) #16	Crhbp (MGP_SPRETEiJ_G0019679) #17	S100z (MGP_SPRETEiJ_G0019680) #18	F2rl1 (MGP_SPRETEiJ_G0019681) #19	F2r (MGP_SPRETEiJ_G0019682) #20	Iqgap2 (MGP_SPRETEiJ_G0019683) #21	F2rl2 (MGP_SPRETEiJ_G0019684) #22	Sv2c (MGP_SPRETEiJ_G0019685) #23	Poc5 (MGP_SPRETEiJ_G0019686) #24	Ankdd1b (MGP_SPRETEiJ_G0019687) #25	Polk (MGP_SPRETEiJ_G0019688) #26	MGP_SPRETEiJ_G0019689	Cert1 (MGP_SPRETEiJ_G0019690) #28	Hmgcr (MGP_SPRETEiJ_G0019691) #29	Gcnt4 (MGP_SPRETEiJ_G0019692) #30	1700029F12Rik (MGP_SPRETEiJ_G0019693)	Fam169a (MGP_SPRETEiJ_G0019694) #31	MGP_SPRETEiJ_G0019695 ##32	Gfm2 (MGP_SPRETEiJ_G0019696) #33	Hexb (MGP_SPRETEiJ_G0019697) #34	Enc1 (MGP_SPRETEiJ_G0019698) #35	Arhgef28 (MGP_SPRETEiJ_G0019699) #36
Ryukyu mouse	MODERN SPECIES	4	Lhfpl2 (MGP_CAROLIEiJ_G0018786) #7	Scamp1 (MGP_CAROLIEiJ_G0018787) #8	MGP_CAROLIEiJ_G0018788 #9	Ap3b1 (MGP_CAROLIEiJ_G0018789) #10	Tbca (MGP_CAROLIEiJ_G0018790) #11	Otp (MGP_CAROLIEiJ_G0018791) #12	MGP_CAROLIEiJ_G0018792 #13	Pde8b (MGP_CAROLIEiJ_G0018793) #14	Zbed3 (MGP_CAROLIEiJ_G0018794) #15	Aggf1 (MGP_CAROLIEiJ_G0018795) #16	Crhbp (MGP_CAROLIEiJ_G0018796) #17	S100z (MGP_CAROLIEiJ_G0018797) #18	F2rl1 (MGP_CAROLIEiJ_G0018798) #19	F2r (MGP_CAROLIEiJ_G0018799) #20	Iqgap2 (MGP_CAROLIEiJ_G0018800) #21	F2rl2 (MGP_CAROLIEiJ_G0018801) #22	Sv2c (MGP_CAROLIEiJ_G0018802) #23	Poc5 (MGP_CAROLIEiJ_G0018803) #24	Ankdd1b (MGP_CAROLIEiJ_G0018804) #25	Polk (MGP_CAROLIEiJ_G0018805) #26	MGP_CAROLIEiJ_G0018806	Cert1 (MGP_CAROLIEiJ_G0018807) #28	Hmgcr (MGP_CAROLIEiJ_G0018808) #29	MGP_CAROLIEiJ_G0018809	Gcnt4 (MGP_CAROLIEiJ_G0018810) #30	1700029F12Rik (MGP_CAROLIEiJ_G0018811)	Fam169a (MGP_CAROLIEiJ_G0018812) #31	Nsa2 (MGP_CAROLIEiJ_G0018813) #32	Gfm2 (MGP_CAROLIEiJ_G0018814) #33	Hexb (MGP_CAROLIEiJ_G0018815) #34	Enc1 (MGP_CAROLIEiJ_G0018816) #35