Mus	ANCESTRAL SPECIES	22	ENSGT00990000203589.b.b #9	ENSGT00940000157310 #10	ENSGT00900000143364	ENSGT00940000157603 #11	ENSGT00390000009710 #12	ENSGT00940000159952 #13	ENSGT00390000017026.c #14	ENSGT00940000157817 #15	ENSGT00940000164103 #16	ENSGT00730000111121 #17	ENSGT00390000001362 #18	ENSGT00940000161125 #19	ENSGT01050000244840.A.a.a #20	ENSGT01050000244840.A.a.b #21	ENSGT00950000183076.b #23	ENSGT01050000244840.A.b.b #22	ENSGT00950000182940.b.b	ENSGT00390000004454	ENSGT00940000154170.A	ENSGT00940000156667	ENSGT00940000155123.b	ENSGT00940000155305	ENSGT00940000162618	ENSGT00940000159721	ENSGT00510000048902.a	ENSGT00390000018706.m.b.b.f.b	ENSGT00550000074890	ENSGT00390000008107.c.a	ENSGT00950000182983.B.a.b	ENSGT00940000155831	ENSGT00390000004228
Mus_A	ANCESTRAL SPECIES	14	ENSGT00990000203589.b.b #9	ENSGT00940000157310 #10	ENSGT00900000143364	ENSGT00940000157603 #11	ENSGT00390000009710 #12	ENSGT00940000159952 #13	ENSGT00390000017026.c #14	ENSGT00940000157817 #15	ENSGT00940000164103 #16	ENSGT00730000111121 #17	ENSGT00390000001362 #18	ENSGT00940000161125 #19	ENSGT01050000244840.A.a.a #20	ENSGT01050000244840.A.a.b #21	ENSGT00950000183076.b #23	ENSGT01050000244840.A.b.b #22	ENSGT00950000182940.b.b	ENSGT00390000004454	ENSGT00940000154170.A	ENSGT00940000156667	ENSGT00940000155123.b	ENSGT00940000155305	ENSGT00940000162618	ENSGT00940000159721	ENSGT00860000136215	ENSGT00510000048902.a	ENSGT00390000018706.m.a	ENSGT00390000018706.m.b.b.f.b	ENSGT00550000074890	ENSGT00390000008107.c.a	ENSGT00950000182983.B.a.b
Mus_B	ANCESTRAL SPECIES	13	ENSGT00990000203589.b.b #9	ENSGT00940000157310 #10	ENSGT00900000143364	ENSGT00940000157603 #11	ENSGT00390000009710 #12	ENSGT00940000159952 #13	ENSGT00390000017026.c #14	ENSGT00940000157817 #15	ENSGT00940000164103 #16	ENSGT00730000111121 #17	ENSGT00390000001362 #18	ENSGT00940000161125 #19	ENSGT01050000244840.A.a.a #20	ENSGT01050000244840.A.a.b #21	ENSGT00950000183076.b #23	ENSGT01050000244840.A.b.b #22	ENSGT00950000182940.b.b	ENSGT00390000004454	ENSGT00940000154170.A	ENSGT00940000156667	ENSGT00940000155123.b	ENSGT00940000155305	ENSGT00940000162618	ENSGT00940000159721	ENSGT00860000136215	ENSGT00510000048902.a	ENSGT00390000018706.m.a	ENSGT00550000074890	ENSGT00390000008107.c.a	ENSGT00950000182983.B.a.b	ENSGT00940000155831
Mus_C	ANCESTRAL SPECIES	10	ENSGT00990000203589.b.b #9	ENSGT00940000157310 #10	ENSGT00900000143364	ENSGT00940000157603 #11	ENSGT00390000009710 #12	ENSGT00940000159952 #13	ENSGT00390000017026.c #14	ENSGT00940000157817 #15	ENSGT00940000164103 #16	ENSGT00730000111121 #17	ENSGT00390000001362 #18	ENSGT00940000161125 #19	ENSGT01050000244840.A.a.a #20	ENSGT01050000244840.A.a.b #21	ENSGT00950000183076.b #23	ENSGT01050000244840.A.b.b #22	ENSGT00950000182940.b.b	ENSGT00390000004454	ENSGT00940000154170.A	ENSGT00940000156667	ENSGT00940000155123.b	ENSGT00940000155305	ENSGT00940000162618	ENSGT00940000159721	ENSGT00860000136215	ENSGT00510000048902.a	ENSGT00390000018706.m.a	ENSGT00550000074890	ENSGT00390000008107.c.a	ENSGT00950000182983.B.a.b	ENSGT00940000155831
Steppe mouse	MODERN SPECIES	3412	Dmgdh (ENSMSIG00000011670) #7	Arsb (ENSMSIG00000011652) #8	Lhfpl2 (ENSMSIG00000011618) #9	Scamp1 (ENSMSIG00000011596) #10	Ap3b1 (ENSMSIG00000011521) #11	ENSMSIG00000011491 #12	Otp (ENSMSIG00000011481) #13	ENSMSIG00000011421 #14	Pde8b (ENSMSIG00000011209) #15	ENSMSIG00000011178 #16	Aggf1 (ENSMSIG00000011146) #17	Crhbp (ENSMSIG00000011120) #18	S100z (ENSMSIG00000011096) #19	F2rl1 (ENSMSIG00000011086) #20	F2r (ENSMSIG00000011072) #21	F2rl2 (ENSMSIG00000011060) #22	Iqgap2 (ENSMSIG00000011044) #23
spretus	MODERN SPECIES	4	Lhfpl2 (MGP_SPRETEiJ_G0019669) #9	Scamp1 (MGP_SPRETEiJ_G0019670) #10	MGP_SPRETEiJ_G0019671	Ap3b1 (MGP_SPRETEiJ_G0019672) #11	Tbca (MGP_SPRETEiJ_G0019673) #12	Otp (MGP_SPRETEiJ_G0019674) #13	MGP_SPRETEiJ_G0019675 #14	Pde8b (MGP_SPRETEiJ_G0019676) #15	Zbed3 (MGP_SPRETEiJ_G0019677) #16	Aggf1 (MGP_SPRETEiJ_G0019678) #17	Crhbp (MGP_SPRETEiJ_G0019679) #18	S100z (MGP_SPRETEiJ_G0019680) #19	F2rl1 (MGP_SPRETEiJ_G0019681) #20	F2r (MGP_SPRETEiJ_G0019682) #21	Iqgap2 (MGP_SPRETEiJ_G0019683) #23	F2rl2 (MGP_SPRETEiJ_G0019684) #22	Sv2c (MGP_SPRETEiJ_G0019685)	Poc5 (MGP_SPRETEiJ_G0019686)	Ankdd1b (MGP_SPRETEiJ_G0019687)	Polk (MGP_SPRETEiJ_G0019688)	MGP_SPRETEiJ_G0019689	Cert1 (MGP_SPRETEiJ_G0019690)	Hmgcr (MGP_SPRETEiJ_G0019691)	Gcnt4 (MGP_SPRETEiJ_G0019692)	1700029F12Rik (MGP_SPRETEiJ_G0019693)	Fam169a (MGP_SPRETEiJ_G0019694)	MGP_SPRETEiJ_G0019695	Gfm2 (MGP_SPRETEiJ_G0019696)	Hexb (MGP_SPRETEiJ_G0019697)	Enc1 (MGP_SPRETEiJ_G0019698)	Arhgef28 (MGP_SPRETEiJ_G0019699)
Mouse	MODERN SPECIES	4	Arsb (ENSMUSG00000042082) #8	Lhfpl2 (ENSMUSG00000045312) #9	Scamp1 (ENSMUSG00000021687) #10	Ap3b1 (ENSMUSG00000021686) #11	Tbca (ENSMUSG00000042043) #12	Otp (ENSMUSG00000021685) #13	Wdr41 (ENSMUSG00000042015) ##14	Pde8b (ENSMUSG00000021684) #15	Zbed3 (ENSMUSG00000041995) #16	Aggf1 (ENSMUSG00000021681) #17	Crhbp (ENSMUSG00000021680) #18	S100z (ENSMUSG00000021679) #19	F2rl1 (ENSMUSG00000021678) #20	F2r (ENSMUSG00000048376) #21	Iqgap2 (ENSMUSG00000021676) #23	F2rl2 (ENSMUSG00000021675) #22	Sv2c (ENSMUSG00000051111)	Btf3l4b (ENSMUSG00000114133)	Poc5 (ENSMUSG00000021671)	Ankdd1b (ENSMUSG00000047117)	Polk (ENSMUSG00000021668)	Cert1 (ENSMUSG00000021669)	Hmgcr (ENSMUSG00000021670)	Ankrd31 (ENSMUSG00000109561)	Gcnt4 (ENSMUSG00000091387)	1700029F12Rik (ENSMUSG00000052075)	Fam169a (ENSMUSG00000041817)	Gm6169 (ENSMUSG00000057762)	Nsa2 (ENSMUSG00000060739)	Gfm2 (ENSMUSG00000021666)	Hexb (ENSMUSG00000021665)
Ryukyu mouse	MODERN SPECIES	4	Lhfpl2 (MGP_CAROLIEiJ_G0018786) #9	Scamp1 (MGP_CAROLIEiJ_G0018787) #10	MGP_CAROLIEiJ_G0018788	Ap3b1 (MGP_CAROLIEiJ_G0018789) #11	Tbca (MGP_CAROLIEiJ_G0018790) #12	Otp (MGP_CAROLIEiJ_G0018791) #13	MGP_CAROLIEiJ_G0018792 #14	Pde8b (MGP_CAROLIEiJ_G0018793) #15	Zbed3 (MGP_CAROLIEiJ_G0018794) #16	Aggf1 (MGP_CAROLIEiJ_G0018795) #17	Crhbp (MGP_CAROLIEiJ_G0018796) #18	S100z (MGP_CAROLIEiJ_G0018797) #19	F2rl1 (MGP_CAROLIEiJ_G0018798) #20	F2r (MGP_CAROLIEiJ_G0018799) #21	Iqgap2 (MGP_CAROLIEiJ_G0018800) #23	F2rl2 (MGP_CAROLIEiJ_G0018801) #22	Sv2c (MGP_CAROLIEiJ_G0018802)	Poc5 (MGP_CAROLIEiJ_G0018803)	Ankdd1b (MGP_CAROLIEiJ_G0018804)	Polk (MGP_CAROLIEiJ_G0018805)	MGP_CAROLIEiJ_G0018806	Cert1 (MGP_CAROLIEiJ_G0018807)	Hmgcr (MGP_CAROLIEiJ_G0018808)	MGP_CAROLIEiJ_G0018809	Gcnt4 (MGP_CAROLIEiJ_G0018810)	1700029F12Rik (MGP_CAROLIEiJ_G0018811)	Fam169a (MGP_CAROLIEiJ_G0018812)	Nsa2 (MGP_CAROLIEiJ_G0018813)	Gfm2 (MGP_CAROLIEiJ_G0018814)	Hexb (MGP_CAROLIEiJ_G0018815)	Enc1 (MGP_CAROLIEiJ_G0018816)
Shrew mouse	MODERN SPECIES	2	Lhfpl2 (MGP_PahariEiJ_G0015863) #9	Scamp1 (MGP_PahariEiJ_G0015864) #10	MGP_PahariEiJ_G0015865	Ap3b1 (MGP_PahariEiJ_G0015866) #11	Tbca (MGP_PahariEiJ_G0015867) #12	Otp (MGP_PahariEiJ_G0015868) #13	MGP_PahariEiJ_G0015869 #14	Pde8b (MGP_PahariEiJ_G0015870) #15	Zbed3 (MGP_PahariEiJ_G0015871) #16	Aggf1 (MGP_PahariEiJ_G0015872) #17	Crhbp (MGP_PahariEiJ_G0015873) #18	S100z (MGP_PahariEiJ_G0015874) #19	F2rl1 (MGP_PahariEiJ_G0015875) #20	F2r (MGP_PahariEiJ_G0015876) #21	Iqgap2 (MGP_PahariEiJ_G0015877) #23	F2rl2 (MGP_PahariEiJ_G0015878) #22	Sv2c (MGP_PahariEiJ_G0015879)	Poc5 (MGP_PahariEiJ_G0015880)	Ankdd1b (MGP_PahariEiJ_G0015881)	Polk (MGP_PahariEiJ_G0015882)	MGP_PahariEiJ_G0015883	Cert1 (MGP_PahariEiJ_G0015884)	Hmgcr (MGP_PahariEiJ_G0015885)	Gcnt4 (MGP_PahariEiJ_G0015886)	Fam169a (MGP_PahariEiJ_G0015887)	Nsa2 (MGP_PahariEiJ_G0015888)	Gfm2 (MGP_PahariEiJ_G0015889)	Hexb (MGP_PahariEiJ_G0015890)	Enc1 (MGP_PahariEiJ_G0015891)	Arhgef28 (MGP_PahariEiJ_G0015892)	Utp15 (MGP_PahariEiJ_G0015893)