Murinae	ANCESTRAL SPECIES	24	ENSGT00940000158270 #7	ENSGT00990000203589.b.b #8	ENSGT00940000157310 #9	ENSGT00940000157603 #10	ENSGT00390000009710 #11	ENSGT00940000159952 #12	ENSGT00390000017026.c ##13	ENSGT00940000157817 #14	ENSGT00940000164103 #15	ENSGT00730000111121 #16	ENSGT00390000001362 #17	ENSGT00940000161125 #18	ENSGT01050000244840.A.a.a #19	ENSGT01050000244840.A.a.b #20	ENSGT00950000183076.b #21	ENSGT01050000244840.A.b.b #22	ENSGT00950000182940.b.b #23	ENSGT00390000004454 #25	ENSGT00940000154170.A #26	ENSGT00940000156667 #27	ENSGT00940000155123.b #28	ENSGT00940000155305 #29	ENSGT00940000162618 #30	ENSGT00940000159721 #31	ENSGT00510000048902.a #33	ENSGT00390000018706.m.b.b.f.b #35	ENSGT00550000074890 #36	ENSGT00390000008107.c.a #37	ENSGT00950000182983.B.a.b	ENSGT00940000155831	ENSGT00390000004228
Mus	ANCESTRAL SPECIES	22	ENSGT00990000203589.b.b #8	ENSGT00940000157310 #9	ENSGT00900000143364	ENSGT00940000157603 #10	ENSGT00390000009710 #11	ENSGT00940000159952 #12	ENSGT00390000017026.c ##13	ENSGT00940000157817 #14	ENSGT00940000164103 #15	ENSGT00730000111121 #16	ENSGT00390000001362 #17	ENSGT00940000161125 #18	ENSGT01050000244840.A.a.a #19	ENSGT01050000244840.A.a.b #20	ENSGT00950000183076.b #21	ENSGT01050000244840.A.b.b #22	ENSGT00950000182940.b.b #23	ENSGT00390000004454 #25	ENSGT00940000154170.A #26	ENSGT00940000156667 #27	ENSGT00940000155123.b #28	ENSGT00940000155305 #29	ENSGT00940000162618 #30	ENSGT00940000159721 #31	ENSGT00510000048902.a #33	ENSGT00390000018706.m.b.b.f.b #35	ENSGT00550000074890 #36	ENSGT00390000008107.c.a #37	ENSGT00950000182983.B.a.b	ENSGT00940000155831	ENSGT00390000004228
Mus_A	ANCESTRAL SPECIES	14	ENSGT00990000203589.b.b #8	ENSGT00940000157310 #9	ENSGT00900000143364	ENSGT00940000157603 #10	ENSGT00390000009710 #11	ENSGT00940000159952 #12	ENSGT00390000017026.c ##13	ENSGT00940000157817 #14	ENSGT00940000164103 #15	ENSGT00730000111121 #16	ENSGT00390000001362 #17	ENSGT00940000161125 #18	ENSGT01050000244840.A.a.a #19	ENSGT01050000244840.A.a.b #20	ENSGT00950000183076.b #21	ENSGT01050000244840.A.b.b #22	ENSGT00950000182940.b.b #23	ENSGT00390000004454 #25	ENSGT00940000154170.A #26	ENSGT00940000156667 #27	ENSGT00940000155123.b #28	ENSGT00940000155305 #29	ENSGT00940000162618 #30	ENSGT00940000159721 #31	ENSGT00860000136215 #32	ENSGT00510000048902.a #33	ENSGT00390000018706.m.a ##35	ENSGT00390000018706.m.b.b.f.b #35	ENSGT00550000074890 #36	ENSGT00390000008107.c.a #37	ENSGT00950000182983.B.a.b
Mus_B	ANCESTRAL SPECIES	13	ENSGT00990000203589.b.b #8	ENSGT00940000157310 #9	ENSGT00900000143364	ENSGT00940000157603 #10	ENSGT00390000009710 #11	ENSGT00940000159952 #12	ENSGT00390000017026.c ##13	ENSGT00940000157817 #14	ENSGT00940000164103 #15	ENSGT00730000111121 #16	ENSGT00390000001362 #17	ENSGT00940000161125 #18	ENSGT01050000244840.A.a.a #19	ENSGT01050000244840.A.a.b #20	ENSGT00950000183076.b #21	ENSGT01050000244840.A.b.b #22	ENSGT00950000182940.b.b #23	ENSGT00390000004454 #25	ENSGT00940000154170.A #26	ENSGT00940000156667 #27	ENSGT00940000155123.b #28	ENSGT00940000155305 #29	ENSGT00940000162618 #30	ENSGT00940000159721 #31	ENSGT00860000136215 #32	ENSGT00510000048902.a #33	ENSGT00390000018706.m.a ##35	ENSGT00550000074890 #36	ENSGT00390000008107.c.a #37	ENSGT00950000182983.B.a.b	ENSGT00940000155831
Mouse	MODERN SPECIES	4	Arsb (ENSMUSG00000042082) #7	Lhfpl2 (ENSMUSG00000045312) #8	Scamp1 (ENSMUSG00000021687) #9	Ap3b1 (ENSMUSG00000021686) #10	Tbca (ENSMUSG00000042043) #11	Otp (ENSMUSG00000021685) #12	Wdr41 (ENSMUSG00000042015) #13	Pde8b (ENSMUSG00000021684) #14	Zbed3 (ENSMUSG00000041995) #15	Aggf1 (ENSMUSG00000021681) #16	Crhbp (ENSMUSG00000021680) #17	S100z (ENSMUSG00000021679) #18	F2rl1 (ENSMUSG00000021678) #19	F2r (ENSMUSG00000048376) #20	Iqgap2 (ENSMUSG00000021676) #21	F2rl2 (ENSMUSG00000021675) #22	Sv2c (ENSMUSG00000051111) #23	Btf3l4b (ENSMUSG00000114133) #24	Poc5 (ENSMUSG00000021671) #25	Ankdd1b (ENSMUSG00000047117) #26	Polk (ENSMUSG00000021668) #27	Cert1 (ENSMUSG00000021669) #28	Hmgcr (ENSMUSG00000021670) #29	Ankrd31 (ENSMUSG00000109561) #30	Gcnt4 (ENSMUSG00000091387) #31	1700029F12Rik (ENSMUSG00000052075) #32	Fam169a (ENSMUSG00000041817) #33	Gm6169 (ENSMUSG00000057762) #34	Nsa2 (ENSMUSG00000060739) #35	Gfm2 (ENSMUSG00000021666) #36	Hexb (ENSMUSG00000021665) #37
Mus_C	ANCESTRAL SPECIES	10	ENSGT00990000203589.b.b #8	ENSGT00940000157310 #9	ENSGT00900000143364	ENSGT00940000157603 #10	ENSGT00390000009710 #11	ENSGT00940000159952 #12	ENSGT00390000017026.c ##13	ENSGT00940000157817 #14	ENSGT00940000164103 #15	ENSGT00730000111121 #16	ENSGT00390000001362 #17	ENSGT00940000161125 #18	ENSGT01050000244840.A.a.a #19	ENSGT01050000244840.A.a.b #20	ENSGT00950000183076.b #21	ENSGT01050000244840.A.b.b #22	ENSGT00950000182940.b.b #23	ENSGT00390000004454 #25	ENSGT00940000154170.A #26	ENSGT00940000156667 #27	ENSGT00940000155123.b #28	ENSGT00940000155305 #29	ENSGT00940000162618 #30	ENSGT00940000159721 #31	ENSGT00860000136215 #32	ENSGT00510000048902.a #33	ENSGT00390000018706.m.a ##35	ENSGT00550000074890 #36	ENSGT00390000008107.c.a #37	ENSGT00950000182983.B.a.b	ENSGT00940000155831
Steppe mouse	MODERN SPECIES	3412	Dmgdh (ENSMSIG00000011670)	Arsb (ENSMSIG00000011652) #7	Lhfpl2 (ENSMSIG00000011618) #8	Scamp1 (ENSMSIG00000011596) #9	Ap3b1 (ENSMSIG00000011521) #10	ENSMSIG00000011491 #11	Otp (ENSMSIG00000011481) #12	ENSMSIG00000011421 ##13	Pde8b (ENSMSIG00000011209) #14	ENSMSIG00000011178 #15	Aggf1 (ENSMSIG00000011146) #16	Crhbp (ENSMSIG00000011120) #17	S100z (ENSMSIG00000011096) #18	F2rl1 (ENSMSIG00000011086) #19	F2r (ENSMSIG00000011072) #20	F2rl2 (ENSMSIG00000011060) #22	Iqgap2 (ENSMSIG00000011044) #21
spretus	MODERN SPECIES	4	Lhfpl2 (MGP_SPRETEiJ_G0019669) #8	Scamp1 (MGP_SPRETEiJ_G0019670) #9	MGP_SPRETEiJ_G0019671	Ap3b1 (MGP_SPRETEiJ_G0019672) #10	Tbca (MGP_SPRETEiJ_G0019673) #11	Otp (MGP_SPRETEiJ_G0019674) #12	MGP_SPRETEiJ_G0019675 ##13	Pde8b (MGP_SPRETEiJ_G0019676) #14	Zbed3 (MGP_SPRETEiJ_G0019677) #15	Aggf1 (MGP_SPRETEiJ_G0019678) #16	Crhbp (MGP_SPRETEiJ_G0019679) #17	S100z (MGP_SPRETEiJ_G0019680) #18	F2rl1 (MGP_SPRETEiJ_G0019681) #19	F2r (MGP_SPRETEiJ_G0019682) #20	Iqgap2 (MGP_SPRETEiJ_G0019683) #21	F2rl2 (MGP_SPRETEiJ_G0019684) #22	Sv2c (MGP_SPRETEiJ_G0019685) #23	Poc5 (MGP_SPRETEiJ_G0019686) #25	Ankdd1b (MGP_SPRETEiJ_G0019687) #26	Polk (MGP_SPRETEiJ_G0019688) #27	MGP_SPRETEiJ_G0019689	Cert1 (MGP_SPRETEiJ_G0019690) #28	Hmgcr (MGP_SPRETEiJ_G0019691) #29	Gcnt4 (MGP_SPRETEiJ_G0019692) #31	1700029F12Rik (MGP_SPRETEiJ_G0019693) #32	Fam169a (MGP_SPRETEiJ_G0019694) #33	MGP_SPRETEiJ_G0019695 ##35	Gfm2 (MGP_SPRETEiJ_G0019696) #36	Hexb (MGP_SPRETEiJ_G0019697) #37	Enc1 (MGP_SPRETEiJ_G0019698)	Arhgef28 (MGP_SPRETEiJ_G0019699)
Ryukyu mouse	MODERN SPECIES	4	Lhfpl2 (MGP_CAROLIEiJ_G0018786) #8	Scamp1 (MGP_CAROLIEiJ_G0018787) #9	MGP_CAROLIEiJ_G0018788	Ap3b1 (MGP_CAROLIEiJ_G0018789) #10	Tbca (MGP_CAROLIEiJ_G0018790) #11	Otp (MGP_CAROLIEiJ_G0018791) #12	MGP_CAROLIEiJ_G0018792 ##13	Pde8b (MGP_CAROLIEiJ_G0018793) #14	Zbed3 (MGP_CAROLIEiJ_G0018794) #15	Aggf1 (MGP_CAROLIEiJ_G0018795) #16	Crhbp (MGP_CAROLIEiJ_G0018796) #17	S100z (MGP_CAROLIEiJ_G0018797) #18	F2rl1 (MGP_CAROLIEiJ_G0018798) #19	F2r (MGP_CAROLIEiJ_G0018799) #20	Iqgap2 (MGP_CAROLIEiJ_G0018800) #21	F2rl2 (MGP_CAROLIEiJ_G0018801) #22	Sv2c (MGP_CAROLIEiJ_G0018802) #23	Poc5 (MGP_CAROLIEiJ_G0018803) #25	Ankdd1b (MGP_CAROLIEiJ_G0018804) #26	Polk (MGP_CAROLIEiJ_G0018805) #27	MGP_CAROLIEiJ_G0018806	Cert1 (MGP_CAROLIEiJ_G0018807) #28	Hmgcr (MGP_CAROLIEiJ_G0018808) #29	MGP_CAROLIEiJ_G0018809 #30	Gcnt4 (MGP_CAROLIEiJ_G0018810) #31	1700029F12Rik (MGP_CAROLIEiJ_G0018811) #32	Fam169a (MGP_CAROLIEiJ_G0018812) #33	Nsa2 (MGP_CAROLIEiJ_G0018813) #35	Gfm2 (MGP_CAROLIEiJ_G0018814) #36	Hexb (MGP_CAROLIEiJ_G0018815) #37	Enc1 (MGP_CAROLIEiJ_G0018816)
Shrew mouse	MODERN SPECIES	2	Lhfpl2 (MGP_PahariEiJ_G0015863) #8	Scamp1 (MGP_PahariEiJ_G0015864) #9	MGP_PahariEiJ_G0015865	Ap3b1 (MGP_PahariEiJ_G0015866) #10	Tbca (MGP_PahariEiJ_G0015867) #11	Otp (MGP_PahariEiJ_G0015868) #12	MGP_PahariEiJ_G0015869 ##13	Pde8b (MGP_PahariEiJ_G0015870) #14	Zbed3 (MGP_PahariEiJ_G0015871) #15	Aggf1 (MGP_PahariEiJ_G0015872) #16	Crhbp (MGP_PahariEiJ_G0015873) #17	S100z (MGP_PahariEiJ_G0015874) #18	F2rl1 (MGP_PahariEiJ_G0015875) #19	F2r (MGP_PahariEiJ_G0015876) #20	Iqgap2 (MGP_PahariEiJ_G0015877) #21	F2rl2 (MGP_PahariEiJ_G0015878) #22	Sv2c (MGP_PahariEiJ_G0015879) #23	Poc5 (MGP_PahariEiJ_G0015880) #25	Ankdd1b (MGP_PahariEiJ_G0015881) #26	Polk (MGP_PahariEiJ_G0015882) #27	MGP_PahariEiJ_G0015883	Cert1 (MGP_PahariEiJ_G0015884) #28	Hmgcr (MGP_PahariEiJ_G0015885) #29	Gcnt4 (MGP_PahariEiJ_G0015886) #31	Fam169a (MGP_PahariEiJ_G0015887) #33	Nsa2 (MGP_PahariEiJ_G0015888) #35	Gfm2 (MGP_PahariEiJ_G0015889) #36	Hexb (MGP_PahariEiJ_G0015890) #37	Enc1 (MGP_PahariEiJ_G0015891)	Arhgef28 (MGP_PahariEiJ_G0015892)	Utp15 (MGP_PahariEiJ_G0015893)
Rat	MODERN SPECIES	11	Tbca (ENSRNOG00000048342) #11	Otp (ENSRNOG00000010560) #12	Wdr41 (ENSRNOG00000025462) ##13	Pde8b (ENSRNOG00000010280) #14	ENSRNOG00000067662	LOC100912266 (ENSRNOG00000059441)	Zbed3 (ENSRNOG00000028941) #15	ENSRNOG00000063007	Aggf1 (ENSRNOG00000029304) #16	Crhbp (ENSRNOG00000017890) #17	S100z (ENSRNOG00000017998) #18	F2rl1 (ENSRNOG00000018003) #19	AABR07007730.1 (ENSRNOG00000018045)	F2r (ENSRNOG00000048043) #20	Iqgap2 (ENSRNOG00000025406) #21	F2rl2 (ENSRNOG00000018054) #22	Sv2c (ENSRNOG00000018094) #23	AABR07007744.2 (ENSRNOG00000060714)	Poc5 (ENSRNOG00000018193) #25	Ankdd1b (ENSRNOG00000025377) #26	Polk (ENSRNOG00000060626) #27	ENSRNOG00000067644	Cert1 (ENSRNOG00000015686) #28	Hmgcr (ENSRNOG00000016122) #29	Ankrd31 (ENSRNOG00000025321) #30	Gcnt4 (ENSRNOG00000064612) #31	Fam169a (ENSRNOG00000016505) #33	Nsa2 (ENSRNOG00000016530) #35	Gfm2 (ENSRNOG00000025285) #36	Hexb (ENSRNOG00000025274) #37	Enc1 (ENSRNOG00000016541)