Rodentia_A	ANCESTRAL SPECIES	16	ENSGT00940000161678	ENSGT00940000160466 #7	ENSGT00390000013811 #8	ENSGT00940000157924 #9	ENSGT00940000163163 #10	ENSGT00940000155438.b #11	ENSGT00950000182915.b.b.b.b	ENSGT00390000002505 #12	ENSGT00730000111147 #13	ENSGT00940000159007 #14	ENSGT00390000000259 #15	ENSGT00390000014626 #16	ENSGT00390000018845.f #17	ENSGT00940000161635	ENSGT00940000159560 #21	ENSGT01050000244840.A.b.a #22	ENSGT00940000162399	ENSGT00390000010974 #23	ENSGT00940000156845	ENSGT00390000014361 #24	ENSGT00940000162475 #25	ENSGT00940000160748 #26	ENSGT00530000063974.a #28	ENSGT00390000016934 #29	ENSGT00510000049316 #30	ENSGT00390000007336	ENSGT00390000012240 #32	ENSGT00390000007029.j	ENSGT00940000157019	ENSGT00390000016851 #35	ENSGT00390000006166 #36
Hystricomorpha	ANCESTRAL SPECIES	47	ENSGT00940000161678	ENSGT00940000160466 #7	ENSGT00390000013811 #8	ENSGT00940000157924 #9	ENSGT00940000163163 #10	ENSGT00940000155438.b #11	ENSGT00950000182915.b.b.b.b	ENSGT00390000002505 #12	ENSGT00730000111147 #13	ENSGT00940000159007 #14	ENSGT00390000000259 #15	ENSGT00390000014626 #16	ENSGT00390000018845.f #17	ENSGT00940000161635	ENSGT00940000159560 #21	ENSGT01050000244840.A.b.a #22	ENSGT00390000010974 #23	ENSGT00940000156845	ENSGT00390000014361 #24	ENSGT00940000162475 #25	ENSGT00940000160748 #26	ENSGT00530000063974.a #28	ENSGT00390000016934 #29	ENSGT00510000049316 #30	ENSGT00390000007336	ENSGT00390000012240 #32	ENSGT00390000007029.j	ENSGT00940000157019	ENSGT00390000016851 #35	ENSGT00390000006166 #36	ENSGT00850000133633
Naked mole-rat female	MODERN SPECIES	21	ENSHGLG00000042939 #7	ENSHGLG00000003291 #8	AP1M1 (ENSHGLG00000041098) #9	ENSHGLG00000047567 #10	EPS15L1 (ENSHGLG00000005235) #11	ENSHGLG00000003381 #12	CHERP (ENSHGLG00000002993) #13	SLC35E1 (ENSHGLG00000002832) #14	MED26 (ENSHGLG00000003432) #15	SMIM7 (ENSHGLG00000042613) #16	TMEM38A (ENSHGLG00000037186) #17	ENSHGLG00000003523 #18	ENSHGLG00000032289 #19	ENSHGLG00000045689 #20	ENSHGLG00000034515 #21	F2RL3 (ENSHGLG00000033959) #22	HAUS8 (ENSHGLG00000041972) #23	USE1 (ENSHGLG00000031898) #24	OCEL1 (ENSHGLG00000049763) #25	ENSHGLG00000050133 #26	ENSHGLG00000049805 #27	ENSHGLG00000005587 #28	BABAM1 (ENSHGLG00000003989) #29	ENSHGLG00000003677 #30	ENSHGLG00000038028 #31	MRPL34 (ENSHGLG00000048306) #32	ENSHGLG00000050823 #33	ENSHGLG00000045856 #34	GTPBP3 (ENSHGLG00000002806) #35	ENSHGLG00000050162 #36	ENSHGLG00000044674 #37
Hystricomorpha_a	ANCESTRAL SPECIES	55	ENSGT00940000161678	ENSGT00940000160466 #7	ENSGT00390000013811 #8	ENSGT00940000157924 #9	ENSGT00940000163163 #10	ENSGT00940000155438.b #11	ENSGT00950000182915.b.b.b.b	ENSGT00390000002505 #12	ENSGT00730000111147 #13	ENSGT00940000159007 #14	ENSGT00390000000259 #15	ENSGT00390000014626 #16	ENSGT00390000018845.f #17	ENSGT00940000161635	ENSGT00940000159560 #21	ENSGT01050000244840.A.b.a #22	ENSGT00390000010974 #23	ENSGT00940000156845	ENSGT00390000014361 #24	ENSGT00940000162475 #25	ENSGT00940000160748 #26	ENSGT00530000063974.a #28	ENSGT00390000016934 #29	ENSGT00510000049316 #30	ENSGT00390000007336	ENSGT00390000012240 #32	ENSGT00390000007029.j	ENSGT00940000157019	ENSGT00390000016851 #35	ENSGT00390000006166 #36	ENSGT00850000133633
Guinea pig	MODERN SPECIES	86	ENSCPOG00000031458	ENSCPOG00000030401	FAM32A (ENSCPOG00000036282) #8	AP1M1 (ENSCPOG00000003653) #9	ENSCPOG00000025120 #10	EPS15L1 (ENSCPOG00000010394) #11	CALR3 (ENSCPOG00000009145)	ENSCPOG00000021179 #12	CHERP (ENSCPOG00000019949) #13	SLC35E1 (ENSCPOG00000008975) #14	MED26 (ENSCPOG00000032983) #15	SMIM7 (ENSCPOG00000039863) #16	TMEM38A (ENSCPOG00000026018) #17	NWD1 (ENSCPOG00000024668)	SIN3B (ENSCPOG00000025963) #21	F2RL3 (ENSCPOG00000040487) #22	HAUS8 (ENSCPOG00000023189) #23	MYO9B (ENSCPOG00000022307)	USE1 (ENSCPOG00000024594) #24	ENSCPOG00000007032 #25	NR2F6 (ENSCPOG00000025861) #26	BABAM1 (ENSCPOG00000006927) #29	ANKLE1 (ENSCPOG00000006932) #30	ABHD8 (ENSCPOG00000006938)	MRPL34 (ENSCPOG00000038177) #32	DDA1 (ENSCPOG00000006944)	ANO8 (ENSCPOG00000006946)	GTPBP3 (ENSCPOG00000027093) #35	ENSCPOG00000006951 #36	CCDC194 (ENSCPOG00000036327)	MVB12A (ENSCPOG00000004492)
Hystricomorpha_b	ANCESTRAL SPECIES	66	ENSGT00940000157246	ENSGT00940000161678	ENSGT00940000160466 #7	ENSGT00390000013811 #8	ENSGT00940000157924 #9	ENSGT00940000155438.b #11	ENSGT00950000182915.b.b.b.b	ENSGT00390000002505 #12	ENSGT00730000111147 #13	ENSGT00940000159007 #14	ENSGT00390000000259 #15	ENSGT00390000014626 #16	ENSGT00390000018845.f #17	ENSGT00940000161635	ENSGT00940000159560 #21	ENSGT01050000244840.A.b.a #22	ENSGT00390000010974 #23	ENSGT00940000156845	ENSGT00390000014361 #24	ENSGT00940000162475 #25	ENSGT00940000160748 #26	ENSGT00530000063974.a #28	ENSGT00390000016934 #29	ENSGT00510000049316 #30	ENSGT00390000007336	ENSGT00390000012240 #32	ENSGT00390000007029.j	ENSGT00940000157019	ENSGT00390000016851 #35	ENSGT00390000006166 #36	ENSGT00850000133633
Long-tailed chinchilla	MODERN SPECIES	231	TPM4 (ENSCLAG00000006213)	RAB8A (ENSCLAG00000006073)	HSH2D (ENSCLAG00000005020)	CIB3 (ENSCLAG00000004966) #7	FAM32A (ENSCLAG00000004833) #8	ENSCLAG00000004795 #9	EPS15L1 (ENSCLAG00000003824) #11	CALR3 (ENSCLAG00000003434)	ENSCLAG00000005950 #12	CHERP (ENSCLAG00000005484) #13	SLC35E1 (ENSCLAG00000005367) #14	MED26 (ENSCLAG00000005164) #15	TMEM38A (ENSCLAG00000004970) #17	NWD1 (ENSCLAG00000007464)	SIN3B (ENSCLAG00000006937) #21	F2RL3 (ENSCLAG00000006791) #22	MYO9B (ENSCLAG00000006247)	USE1 (ENSCLAG00000006857) #24	ENSCLAG00000006628 #25	USHBP1 (ENSCLAG00000006311) #28	BABAM1 (ENSCLAG00000006202) #29	ABHD8 (ENSCLAG00000008511)	MRPL34 (ENSCLAG00000008278) #32	DDA1 (ENSCLAG00000008060)	ANO8 (ENSCLAG00000008087)	PLVAP (ENSCLAG00000008012) #36	MVB12A (ENSCLAG00000007762)	ENSCLAG00000007691	NXNL1 (ENSCLAG00000007147)	SLC27A1 (ENSCLAG00000007064)	PGLS (ENSCLAG00000006976)
Degu	MODERN SPECIES	345	TPM4 (ENSODEG00000001342)	RAB8A (ENSODEG00000001241)	ENSODEG00000001251	CIB3 (ENSODEG00000001268) #7	ENSODEG00000001275 #8	AP1M1 (ENSODEG00000001296) #9	EPS15L1 (ENSODEG00000001383) #11	ENSODEG00000001503	CHERP (ENSODEG00000001528) #13	SLC35E1 (ENSODEG00000001560) #14	MED26 (ENSODEG00000001579) #15	SMIM7 (ENSODEG00000001606) #16	TMEM38A (ENSODEG00000001632) #17	NWD1 (ENSODEG00000001676)	SIN3B (ENSODEG00000001769) #21	F2RL3 (ENSODEG00000001898) #22	ENSODEG00000001912 #23	MYO9B (ENSODEG00000002010)	USE1 (ENSODEG00000002167) #24	ENSODEG00000002226 #25	NR2F6 (ENSODEG00000002243) #26	USHBP1 (ENSODEG00000001357) #28	BABAM1 (ENSODEG00000001401) #29	ANKLE1 (ENSODEG00000001442) #30	ABHD8 (ENSODEG00000001471)	MRPL34 (ENSODEG00000001492) #32	ENSODEG00000001501	ANO8 (ENSODEG00000001546)	ENSODEG00000001637 #35	CCDC194 (ENSODEG00000001653)	ENSODEG00000001667 #37
Sciuridae	ANCESTRAL SPECIES	20	ENSGT00940000161678	ENSGT00940000160466 #7	ENSGT00390000013811 #8	ENSGT00940000157924 #9	ENSGT00940000163163 #10	ENSGT00940000155438.b #11	ENSGT00950000182915.b.b.b.b	ENSGT00390000002505 #12	ENSGT00730000111147 #13	ENSGT00940000159007 #14	ENSGT00390000000259 #15	ENSGT00390000014626 #16	ENSGT00390000018845.f #17	ENSGT00940000161635	ENSGT00940000159560 #21	ENSGT01050000244840.A.b.a #22	ENSGT00940000162399	ENSGT00390000010974 #23	ENSGT00940000156845	ENSGT00390000014361 #24	ENSGT00940000162475 #25	ENSGT00940000160748 #26	ENSGT00530000063974.a #28	ENSGT00390000016934 #29	ENSGT00510000049316 #30	ENSGT00390000007336	ENSGT00390000012240 #32	ENSGT00390000007029.j	ENSGT00940000157019	ENSGT00390000016851 #35	ENSGT00390000006166 #36
Marmotini	ANCESTRAL SPECIES	12	ENSGT00940000161678	ENSGT00940000160466 #7	ENSGT00390000013811 #8	ENSGT00940000157924 #9	ENSGT00940000164495	ENSGT00940000155438.b #11	ENSGT00950000182915.b.b.b.b	ENSGT00390000002505 #12	ENSGT00730000111147 #13	ENSGT00940000159007 #14	ENSGT00390000000259 #15	ENSGT00390000014626 #16	ENSGT00390000018845.f #17	ENSGT00940000161635	ENSGT00940000159560 #21	ENSGT01050000244840.A.b.a #22	ENSGT00940000162399	ENSGT00390000010974 #23	ENSGT00940000156845	ENSGT00390000014361 #24	ENSGT00940000162475 #25	ENSGT00940000160748 #26	ENSGT00530000063974.a #28	ENSGT00390000016934 #29	ENSGT00510000049316 #30	ENSGT00390000007336	ENSGT00390000012240 #32	ENSGT00390000007029.j	ENSGT00940000157019	ENSGT00390000016851 #35	ENSGT00390000006166 #36
Alpin marmot	MODERN SPECIES	360																ENSMMMG00000009818 #22
Marmotini_b	ANCESTRAL SPECIES	12	ENSGT00940000161678	ENSGT00940000160466 #7	ENSGT00390000013811 #8	ENSGT00940000157924 #9	ENSGT00940000164495	ENSGT00940000155438.b #11	ENSGT00950000182915.b.b.b.b	ENSGT00390000002505 #12	ENSGT00730000111147 #13	ENSGT00940000159007 #14	ENSGT00390000000259 #15	ENSGT00390000014626 #16	ENSGT00390000018845.f #17	ENSGT00940000161635	ENSGT00940000159560 #21	ENSGT01050000244840.A.b.a #22	ENSGT00940000162399	ENSGT00390000010974 #23	ENSGT00940000156845	ENSGT00390000014361 #24	ENSGT00940000162475 #25	ENSGT00940000160748 #26	ENSGT00530000063974.a #28	ENSGT00390000016934 #29	ENSGT00510000049316 #30	ENSGT00390000007336	ENSGT00390000012240 #32	ENSGT00390000007029.j	ENSGT00940000157019	ENSGT00390000016851 #35	ENSGT00390000006166 #36
Arctic ground squirrel	MODERN SPECIES	73	ENSUPAG00010021728	CIB3 (ENSUPAG00010021724) #7	FAM32A (ENSUPAG00010021722) #8	AP1M1 (ENSUPAG00010021716) #9	KLF2 (ENSUPAG00010021714) #10	EPS15L1 (ENSUPAG00010021679) #11	CALR3 (ENSUPAG00010021675)	C19orf44 (ENSUPAG00010021668) #12	CHERP (ENSUPAG00010021662) #13	SLC35E1 (ENSUPAG00010021658) #14	MED26 (ENSUPAG00010021653) #15	ENSUPAG00010021646 #16	TMEM38A (ENSUPAG00010021641) #17	NWD1 (ENSUPAG00010021632)	SIN3B (ENSUPAG00010021629) #21	F2RL3 (ENSUPAG00010021628) #22	ENSUPAG00010021611	HAUS8 (ENSUPAG00010021606) #23	MYO9B (ENSUPAG00010019621)	USE1 (ENSUPAG00010019584) #24	ENSUPAG00010019579 #25	NR2F6 (ENSUPAG00010019563) #26	USHBP1 (ENSUPAG00010019546) #28	BABAM1 (ENSUPAG00010019537) #29	ANKLE1 (ENSUPAG00010019507) #30	ABHD8 (ENSUPAG00010019500)	MRPL34 (ENSUPAG00010019490) #32	DDA1 (ENSUPAG00010019477)	ANO8 (ENSUPAG00010019468)	GTPBP3 (ENSUPAG00010019455) #35	PLVAP (ENSUPAG00010019443) #36
Eurasian red squirrel	MODERN SPECIES	7	HSH2D (ENSSVLG00005021858)	CIB3 (ENSSVLG00005021909) #7	FAM32A (ENSSVLG00005021993) #8	AP1M1 (ENSSVLG00005022090) #9	KLF2 (ENSSVLG00005022188) #10	EPS15L1 (ENSSVLG00005022241) #11	CALR3 (ENSSVLG00005022305)	C19orf44 (ENSSVLG00005022379) #12	CHERP (ENSSVLG00005022500) #13	SLC35E1 (ENSSVLG00005022541) #14	MED26 (ENSSVLG00005022596) #15	SMIM7 (ENSSVLG00005022628) #16	TMEM38A (ENSSVLG00005022680) #17	NWD1 (ENSSVLG00005022737)	SIN3B (ENSSVLG00005023096) #21	F2RL3 (ENSSVLG00005023189) #22	ENSSVLG00005023226	ENSSVLG00005023298 #23	MYO9B (ENSSVLG00005023423)	USE1 (ENSSVLG00005023596) #24	OCEL1 (ENSSVLG00005023629) #25	NR2F6 (ENSSVLG00005023666) #26	USHBP1 (ENSSVLG00005023704) #28	BABAM1 (ENSSVLG00005023831) #29	ANKLE1 (ENSSVLG00005023936) #30	ABHD8 (ENSSVLG00005024083)	MRPL34 (ENSSVLG00005024100) #32	DDA1 (ENSSVLG00005024124)	ANO8 (ENSSVLG00005024146)	GTPBP3 (ENSSVLG00005024183) #35	PLVAP (ENSSVLG00005024254) #36