Mus_A	ANCESTRAL SPECIES	14	ENSGT00390000018706.m.b.b.f.b ##8	ENSGT00390000018706.m.a #8	ENSGT00510000048902.a #9	ENSGT00860000136215 #10	ENSGT00940000159721 #11	ENSGT00940000162618	ENSGT00940000155305 #12	ENSGT00940000155123.b #13	ENSGT00940000156667 #15	ENSGT00940000154170.A #16	ENSGT00390000004454 #17	ENSGT00950000182940.b.b #18	ENSGT01050000244840.A.b.b #19	ENSGT00950000183076.b #20	ENSGT01050000244840.A.a.b #21	ENSGT01050000244840.A.a.a #22	ENSGT00940000161125 #23	ENSGT00390000001362 #24	ENSGT00730000111121 #25	ENSGT00940000164103 #26	ENSGT00940000157817 #27	ENSGT00390000017026.c #28	ENSGT00940000159952 #29	ENSGT00390000009710 #30	ENSGT00940000157603 #31	ENSGT00900000143364 #32	ENSGT00940000157310 #33	ENSGT00990000203589.b.b #34	ENSGT00940000158270 #35	ENSGT00940000158176 #36	ENSGT00390000003122.c.b #37
Mus_B	ANCESTRAL SPECIES	13	ENSGT00550000074890 #7	ENSGT00390000018706.m.a #8	ENSGT00510000048902.a #9	ENSGT00860000136215 #10	ENSGT00940000159721 #11	ENSGT00940000162618	ENSGT00940000155305 #12	ENSGT00940000155123.b #13	ENSGT00940000156667 #15	ENSGT00940000154170.A #16	ENSGT00390000004454 #17	ENSGT00950000182940.b.b #18	ENSGT01050000244840.A.b.b #19	ENSGT00950000183076.b #20	ENSGT01050000244840.A.a.b #21	ENSGT01050000244840.A.a.a #22	ENSGT00940000161125 #23	ENSGT00390000001362 #24	ENSGT00730000111121 #25	ENSGT00940000164103 #26	ENSGT00940000157817 #27	ENSGT00390000017026.c #28	ENSGT00940000159952 #29	ENSGT00390000009710 #30	ENSGT00940000157603 #31	ENSGT00900000143364 #32	ENSGT00940000157310 #33	ENSGT00990000203589.b.b #34	ENSGT00940000158270 #35	ENSGT00940000158176 #36	ENSGT00390000003122.c.b #37
Mus_C	ANCESTRAL SPECIES	10	ENSGT00550000074890 #7	ENSGT00390000018706.m.a #8	ENSGT00510000048902.a #9	ENSGT00860000136215 #10	ENSGT00940000159721 #11	ENSGT00940000162618	ENSGT00940000155305 #12	ENSGT00940000155123.b #13	ENSGT00940000156667 #15	ENSGT00940000154170.A #16	ENSGT00390000004454 #17	ENSGT00950000182940.b.b #18	ENSGT01050000244840.A.b.b #19	ENSGT00950000183076.b #20	ENSGT01050000244840.A.a.b #21	ENSGT01050000244840.A.a.a #22	ENSGT00940000161125 #23	ENSGT00390000001362 #24	ENSGT00730000111121 #25	ENSGT00940000164103 #26	ENSGT00940000157817 #27	ENSGT00390000017026.c #28	ENSGT00940000159952 #29	ENSGT00390000009710 #30	ENSGT00940000157603 #31	ENSGT00900000143364 #32	ENSGT00940000157310 #33	ENSGT00990000203589.b.b #34	ENSGT00940000158270 #35	ENSGT00940000158176 #36	ENSGT00390000003122.c.b #37
spretus	MODERN SPECIES	4	Gfm2 (MGP_SPRETEiJ_G0019696) #7	MGP_SPRETEiJ_G0019695 #8	Fam169a (MGP_SPRETEiJ_G0019694) #9	1700029F12Rik (MGP_SPRETEiJ_G0019693) #10	Gcnt4 (MGP_SPRETEiJ_G0019692) #11	Hmgcr (MGP_SPRETEiJ_G0019691) #12	Cert1 (MGP_SPRETEiJ_G0019690) #13	MGP_SPRETEiJ_G0019689 #14	Polk (MGP_SPRETEiJ_G0019688) #15	Ankdd1b (MGP_SPRETEiJ_G0019687) #16	Poc5 (MGP_SPRETEiJ_G0019686) #17	Sv2c (MGP_SPRETEiJ_G0019685) #18	F2rl2 (MGP_SPRETEiJ_G0019684) #19	Iqgap2 (MGP_SPRETEiJ_G0019683) #20	F2r (MGP_SPRETEiJ_G0019682) #21	F2rl1 (MGP_SPRETEiJ_G0019681) #22	S100z (MGP_SPRETEiJ_G0019680) #23	Crhbp (MGP_SPRETEiJ_G0019679) #24	Aggf1 (MGP_SPRETEiJ_G0019678) #25	Zbed3 (MGP_SPRETEiJ_G0019677) #26	Pde8b (MGP_SPRETEiJ_G0019676) #27	MGP_SPRETEiJ_G0019675 #28	Otp (MGP_SPRETEiJ_G0019674) #29	Tbca (MGP_SPRETEiJ_G0019673) #30	Ap3b1 (MGP_SPRETEiJ_G0019672) #31	MGP_SPRETEiJ_G0019671 #32	Scamp1 (MGP_SPRETEiJ_G0019670) #33	Lhfpl2 (MGP_SPRETEiJ_G0019669) #34	Arsb (MGP_SPRETEiJ_G0019668) #35	Dmgdh (MGP_SPRETEiJ_G0019667) #36	Bhmt2 (MGP_SPRETEiJ_G0019666) #37
Steppe mouse	MODERN SPECIES	3412													Iqgap2 (ENSMSIG00000011044) #20	F2rl2 (ENSMSIG00000011060) #19	F2r (ENSMSIG00000011072) #21	F2rl1 (ENSMSIG00000011086) #22	S100z (ENSMSIG00000011096) #23	Crhbp (ENSMSIG00000011120) #24	Aggf1 (ENSMSIG00000011146) #25	ENSMSIG00000011178 #26	Pde8b (ENSMSIG00000011209) #27	ENSMSIG00000011421 #28	Otp (ENSMSIG00000011481) #29	ENSMSIG00000011491 #30	Ap3b1 (ENSMSIG00000011521) #31	Scamp1 (ENSMSIG00000011596) #33	Lhfpl2 (ENSMSIG00000011618) #34	Arsb (ENSMSIG00000011652) #35	Dmgdh (ENSMSIG00000011670) #36	Bhmt2 (ENSMSIG00000011736) #37	ENSMSIG00000011793
Mouse	MODERN SPECIES	4	Gm6169 (ENSMUSG00000057762)	Fam169a (ENSMUSG00000041817) #9	1700029F12Rik (ENSMUSG00000052075) #10	Gcnt4 (ENSMUSG00000091387) #11	Ankrd31 (ENSMUSG00000109561)	Hmgcr (ENSMUSG00000021670) #12	Cert1 (ENSMUSG00000021669) #13	Polk (ENSMUSG00000021668) #15	Ankdd1b (ENSMUSG00000047117) #16	Poc5 (ENSMUSG00000021671) #17	Btf3l4b (ENSMUSG00000114133)	Sv2c (ENSMUSG00000051111) #18	F2rl2 (ENSMUSG00000021675) #19	Iqgap2 (ENSMUSG00000021676) #20	F2r (ENSMUSG00000048376) #21	F2rl1 (ENSMUSG00000021678) #22	S100z (ENSMUSG00000021679) #23	Crhbp (ENSMUSG00000021680) #24	Aggf1 (ENSMUSG00000021681) #25	Zbed3 (ENSMUSG00000041995) #26	Pde8b (ENSMUSG00000021684) #27	Wdr41 (ENSMUSG00000042015) ##28	Otp (ENSMUSG00000021685) #29	Tbca (ENSMUSG00000042043) #30	Ap3b1 (ENSMUSG00000021686) #31	Scamp1 (ENSMUSG00000021687) #33	Lhfpl2 (ENSMUSG00000045312) #34	Arsb (ENSMUSG00000042082) #35	Dmgdh (ENSMUSG00000042102) #36	Bhmt2 (ENSMUSG00000042118) #37	Bhmt (ENSMUSG00000074768) ##37
Ryukyu mouse	MODERN SPECIES	4	Nsa2 (MGP_CAROLIEiJ_G0018813) ##8	Fam169a (MGP_CAROLIEiJ_G0018812) #9	1700029F12Rik (MGP_CAROLIEiJ_G0018811) #10	Gcnt4 (MGP_CAROLIEiJ_G0018810) #11	MGP_CAROLIEiJ_G0018809	Hmgcr (MGP_CAROLIEiJ_G0018808) #12	Cert1 (MGP_CAROLIEiJ_G0018807) #13	MGP_CAROLIEiJ_G0018806	Polk (MGP_CAROLIEiJ_G0018805) #15	Ankdd1b (MGP_CAROLIEiJ_G0018804) #16	Poc5 (MGP_CAROLIEiJ_G0018803) #17	Sv2c (MGP_CAROLIEiJ_G0018802) #18	F2rl2 (MGP_CAROLIEiJ_G0018801) #19	Iqgap2 (MGP_CAROLIEiJ_G0018800) #20	F2r (MGP_CAROLIEiJ_G0018799) #21	F2rl1 (MGP_CAROLIEiJ_G0018798) #22	S100z (MGP_CAROLIEiJ_G0018797) #23	Crhbp (MGP_CAROLIEiJ_G0018796) #24	Aggf1 (MGP_CAROLIEiJ_G0018795) #25	Zbed3 (MGP_CAROLIEiJ_G0018794) #26	Pde8b (MGP_CAROLIEiJ_G0018793) #27	MGP_CAROLIEiJ_G0018792 #28	Otp (MGP_CAROLIEiJ_G0018791) #29	Tbca (MGP_CAROLIEiJ_G0018790) #30	Ap3b1 (MGP_CAROLIEiJ_G0018789) #31	MGP_CAROLIEiJ_G0018788 #32	Scamp1 (MGP_CAROLIEiJ_G0018787) #33	Lhfpl2 (MGP_CAROLIEiJ_G0018786) #34	MGP_CAROLIEiJ_G0018785	Arsb (MGP_CAROLIEiJ_G0018784) #35	MGP_CAROLIEiJ_G0018783