Euarchontoglires_A ANCESTRAL SPECIES 11 ENSGT00940000163182 #8 ENSGT00940000160087 #9 ENSGT00940000155902 #10 ENSGT00390000012030.b.a #11 ENSGT00390000012178.g.b #12 ENSGT00940000159568 #13 ENSGT00940000163576 ENSGT00390000008820.e.b #15 ENSGT00940000161697 #16 ENSGT00940000163592 ENSGT01100000263536.B.c.b #17 ENSGT01050000245003 #18 ENSGT00940000163808 #19 ENSGT01040000240444.A.a.a.a.b #20 ENSGT01100000263536.A.a.a.b #21 ENSGT01100000263536.A.a.a.a #22 ENSGT01030000234518.D #23 ENSGT00950000183115.b.b #24 ENSGT00940000161206 #25 ENSGT00950000182832.D.b #26 ENSGT00940000162488 #27 ENSGT01050000244948.d #29 ENSGT00950000183107.a.b.b #30 ENSGT00730000111570 #31 ENSGT00940000156017 #32 ENSGT00940000165353 ENSGT00390000011425.A #33 ENSGT00940000164351 ENSGT00390000017581.a ENSGT00940000161429 #34 ENSGT00730000111075.b #35 Glires ANCESTRAL SPECIES 10 ENSGT00940000163182 #8 ENSGT00940000160087 #9 ENSGT00940000155902 #10 ENSGT00390000012030.b.a #11 ENSGT00390000012178.g.b #12 ENSGT00940000159568 #13 ENSGT00940000163576 ENSGT00390000008820.e.b #15 ENSGT00940000161697 #16 ENSGT00940000163592 ENSGT01100000263536.B.c.b #17 ENSGT01050000245003 #18 ENSGT00940000163808 #19 ENSGT01040000240444.A.a.a.a.b #20 ENSGT01100000263536.A.a.a.b #21 ENSGT01100000263536.A.a.a.a #22 ENSGT01030000234518.D #23 ENSGT00950000183115.b.b #24 ENSGT00940000161206 #25 ENSGT00950000182832.D.b #26 ENSGT00940000162488 #27 ENSGT01050000244948.d #29 ENSGT00950000183107.a.b.b #30 ENSGT00730000111570 #31 ENSGT00940000156017 #32 ENSGT00940000165353 ENSGT00390000011425.A #33 ENSGT00940000164351 ENSGT00390000017581.a ENSGT00940000161429 #34 ENSGT00730000111075.b #35 Rodentia ANCESTRAL SPECIES 10 ENSGT00940000163182 #8 ENSGT00940000160087 #9 ENSGT00940000155902 #10 ENSGT00390000012030.b.a #11 ENSGT00390000012178.g.b #12 ENSGT00940000159568 #13 ENSGT00940000163576 ENSGT00390000008820.e.b #15 ENSGT00940000161697 #16 ENSGT00940000163592 ENSGT01100000263536.B.c.b #17 ENSGT01050000245003 #18 ENSGT00940000163808 #19 ENSGT01040000240444.A.a.a.a.b #20 ENSGT01100000263536.A.a.a.b #21 ENSGT01100000263536.A.a.a.a #22 ENSGT01030000234518.D #23 ENSGT00950000183115.b.b #24 ENSGT00940000161206 #25 ENSGT00950000182832.D.b #26 ENSGT00940000162488 #27 ENSGT01050000244948.d #29 ENSGT00950000183107.a.b.b #30 ENSGT00730000111570 #31 ENSGT00940000156017 #32 ENSGT00940000165353 ENSGT00390000011425.A #33 ENSGT00940000164351 ENSGT00390000017581.a ENSGT00940000161429 #34 ENSGT00730000111075.b #35 Rodentia_B ANCESTRAL SPECIES 16 ENSGT00940000163182 #8 ENSGT00940000160087 #9 ENSGT00940000155902 #10 ENSGT00390000012030.b.a #11 ENSGT00390000012178.g.b #12 ENSGT00940000159568 #13 ENSGT00940000163576 ENSGT00390000008820.e.b #15 ENSGT00940000161697 #16 ENSGT00940000163592 ENSGT01100000263536.B.c.b #17 ENSGT01050000245003 #18 ENSGT00940000163808 #19 ENSGT01040000240444.A.a.a.a.b #20 ENSGT01100000263536.A.a.a.b #21 ENSGT01100000263536.A.a.a.a #22 ENSGT01030000234518.D #23 ENSGT00950000183115.b.b #24 ENSGT00940000161206 #25 ENSGT00940000166733 ENSGT00950000185117 ENSGT00950000183107.a.b.b #30 ENSGT00730000111570 #31 ENSGT00940000156017 #32 ENSGT00940000165353 ENSGT00390000011425.A #33 ENSGT00390000017581.a ENSGT00940000161429 #34 ENSGT00730000111075.b #35 ENSGT00940000159242 #37 ENSGT00390000008591 Myomorpha ANCESTRAL SPECIES 6 ENSGT00940000163182 #8 ENSGT00940000160087 #9 ENSGT00940000155902 #10 ENSGT00390000012030.b.a #11 ENSGT00390000012178.g.b #12 ENSGT00940000159568 #13 ENSGT00940000163576 ENSGT00390000008820.e.b #15 ENSGT00940000161697 #16 ENSGT00940000163592 ENSGT01100000263536.B.c.b #17 ENSGT01050000245003 #18 ENSGT00940000163808 #19 ENSGT01040000240444.A.a.a.a.b #20 ENSGT01100000263536.A.a.a.b #21 ENSGT01100000263536.A.a.a.a #22 ENSGT01030000234518.D #23 ENSGT00950000183115.b.b #24 ENSGT00940000161206 #25 ENSGT00950000185117 ENSGT00950000183107.a.b.b #30 ENSGT00730000111570 #31 ENSGT00940000156017 #32 ENSGT00940000165353 ENSGT00390000011425.A #33 ENSGT00390000017581.a ENSGT00940000161429 #34 ENSGT00730000111075.b #35 ENSGT00940000159242 #37 ENSGT00390000008591 ENSGT01000000216433 Muroidea ANCESTRAL SPECIES 50 ENSGT00940000163182 #8 ENSGT00940000160087 #9 ENSGT00940000155902 #10 ENSGT00390000012030.b.a #11 ENSGT00390000012178.g.b #12 ENSGT00940000159568 #13 ENSGT00940000163576 ENSGT00390000008820.e.b #15 ENSGT00940000161697 #16 ENSGT00940000163592 ENSGT01100000263536.B.c.b #17 ENSGT01050000245003 #18 ENSGT00940000163808 #19 ENSGT01040000240444.A.a.a.a.b #20 ENSGT01100000263536.A.a.a.b #21 ENSGT01100000263536.A.a.a.a #22 ENSGT01030000234518.D #23 ENSGT00950000183115.b.b #24 ENSGT00940000161206 #25 ENSGT00950000185117 ENSGT00950000183107.a.b.b #30 Muroidea_A ANCESTRAL SPECIES 7 ENSGT00940000163182 #8 ENSGT00940000160087 #9 ENSGT00940000155902 #10 ENSGT00390000012030.b.a #11 ENSGT00390000012178.g.b #12 ENSGT00940000159568 #13 ENSGT00940000163576 ENSGT00390000008820.e.b #15 ENSGT00940000161697 #16 ENSGT00940000163592 ENSGT01100000263536.B.c.b #17 ENSGT01050000245003 #18 ENSGT00940000163808 #19 ENSGT01040000240444.A.a.a.a.b #20 ENSGT01100000263536.A.a.a.b #21 ENSGT01100000263536.A.a.a.a #22 ENSGT01030000234518.D #23 ENSGT00950000183115.b.b #24 ENSGT00940000161206 #25 ENSGT00950000182832.D.b #26 ENSGT00940000162488 #27 ENSGT00950000182962.b.b.a #28 ENSGT01050000244948.d #29 ENSGT00950000183107.a.b.b #30 ENSGT00730000111570 #31 ENSGT00940000156017 #32 ENSGT00940000165353 ENSGT00390000011425.A #33 ENSGT00390000017581.a ENSGT00940000161429 #34 ENSGT00730000111075.b #35 Murinae ANCESTRAL SPECIES 14 ENSGT00940000160087 #9 ENSGT00940000155902 #10 ENSGT00390000012030.b.a #11 ENSGT00390000012178.g.b #12 ENSGT00940000159568 #13 ENSGT00950000183593 #14 ENSGT00940000164586.b ENSGT00390000008820.e.b #15 ENSGT00940000161697 #16 ENSGT00940000163592 ENSGT01100000263536.B.c.b #17 ENSGT01050000245003 #18 ENSGT00940000163808 #19 ENSGT01040000240444.A.a.a.a.b #20 ENSGT01100000263536.A.a.a.b #21 ENSGT01100000263536.A.a.a.a #22 ENSGT01030000234518.D #23 ENSGT00950000183115.b.b #24 ENSGT00940000161206 #25 ENSGT00950000182832.D.b #26 ENSGT00940000162488 #27 ENSGT00950000182962.b.b.a #28 ENSGT01050000244948.d #29 ENSGT00950000183107.a.b.b #30 ENSGT00730000111570 #31 ENSGT00940000156017 #32 ENSGT00940000165353 ENSGT00390000011425.A #33 ENSGT00390000017581.a ENSGT00940000161429 #34 ENSGT00730000111075.b #35 Mus ANCESTRAL SPECIES 9 ENSGT00940000163182 #8 ENSGT00940000160087 #9 ENSGT00940000155902 #10 ENSGT00390000012030.b.a #11 ENSGT00390000012178.g.b #12 ENSGT00940000159568 #13 ENSGT00950000183593 #14 ENSGT00390000008820.e.b #15 ENSGT00940000161697 #16 ENSGT00940000163592.c ENSGT01100000263536.B.c.b #17 ENSGT01050000245003 #18 ENSGT00940000163808 #19 ENSGT01040000240444.A.a.a.a.b #20 ENSGT01100000263536.A.a.a.b #21 ENSGT01100000263536.A.a.a.a #22 ENSGT01030000234518.D #23 ENSGT00950000183115.b.b #24 ENSGT00940000161206 #25 ENSGT00950000182832.D.b #26 ENSGT00940000162488 #27 ENSGT00950000182962.b.b.a #28 ENSGT01050000244948.d #29 ENSGT00950000183107.a.b.b #30 ENSGT00730000111570 #31 ENSGT00940000156017 #32 ENSGT00940000165353 ENSGT00390000011425.A #33 ENSGT00940000161429 #34 ENSGT00730000111075.b #35 ENSGT00940000159242 #37 Mus_A ANCESTRAL SPECIES 15 ENSGT00390000016779.b.a.a.b ENSGT00940000160087 #9 ENSGT00940000155902 #10 ENSGT00390000012030.b.a #11 ENSGT00390000012178.g.b.k #12 ENSGT00940000159568 #13 ENSGT00950000183593 #14 ENSGT00390000008820.e.b #15 ENSGT00940000161697 #16 ENSGT00940000163592.c ENSGT01100000263536.B.c.b #17 ENSGT01050000245003 #18 ENSGT00940000163808 #19 ENSGT01040000240444.A.a.a.a.b #20 ENSGT01100000263536.A.a.a.b #21 ENSGT01100000263536.A.a.a.a #22 ENSGT01030000234518.D #23 ENSGT00950000183115.b.b #24 ENSGT00940000161206 #25 ENSGT00950000182832.D.b #26 ENSGT00940000162488 #27 ENSGT00950000182962.b.b.a #28 ENSGT01050000244948.d #29 ENSGT00950000183107.a.b.b #30 ENSGT00730000111570 #31 ENSGT00940000156017 #32 ENSGT00940000165353 ENSGT00390000011425.A #33 ENSGT00940000161429 #34 ENSGT00730000111075.b #35 ENSGT00940000159242 #37 Mus_B ANCESTRAL SPECIES 14 ENSGT00390000016779.b.a.a.b ENSGT00940000160087 #9 ENSGT00940000155902 #10 ENSGT00390000012030.b.a #11 ENSGT00390000012178.g.b.k #12 ENSGT00940000159568 #13 ENSGT00950000183593 #14 ENSGT00390000008820.e.b #15 ENSGT00940000161697 #16 ENSGT00940000163592.c ENSGT01100000263536.B.c.b #17 ENSGT01050000245003 #18 ENSGT00940000163808 #19 ENSGT01040000240444.A.a.a.a.b #20 ENSGT01100000263536.A.a.a.b #21 ENSGT01100000263536.A.a.a.a #22 ENSGT01030000234518.D #23 ENSGT00950000183115.b.b #24 ENSGT00940000161206 #25 ENSGT00950000182832.D.b #26 ENSGT00940000162488 #27 ENSGT00950000182962.b.b.a #28 ENSGT01050000244948.d #29 ENSGT00950000183107.a.b.b #30 ENSGT00730000111570 #31 ENSGT00940000156017 #32 ENSGT00940000165353 ENSGT00390000011425.A #33 ENSGT00940000161429 #34 ENSGT00730000111075.b #35 ENSGT00940000159242 #37 Mus_C ANCESTRAL SPECIES 22 ENSGT00390000016333 #7 ENSGT00940000163182 #8 ENSGT00940000160087 #9 ENSGT00940000155902 #10 ENSGT00390000012030.b.a #11 ENSGT00390000012178.g.b.k #12 ENSGT00940000159568 #13 ENSGT00950000183593 #14 ENSGT00390000008820.e.b #15 ENSGT00940000161697 #16 ENSGT01100000263536.B.c.b #17 ENSGT01050000245003 #18 ENSGT00940000163808 #19 ENSGT01040000240444.A.a.a.a.b #20 ENSGT01100000263536.A.a.a.b #21 ENSGT01100000263536.A.a.a.a #22 ENSGT01030000234518.D #23 ENSGT00950000183115.b.b #24 ENSGT00940000161206 #25 ENSGT00950000182832.D.b #26 ENSGT00940000162488 #27 ENSGT00950000182962.b.b.a #28 ENSGT01050000244948.d #29 ENSGT00950000183107.a.b.b #30 ENSGT00730000111570 #31 ENSGT00940000156017 #32 ENSGT00940000165353 ENSGT00390000011425.A #33 ENSGT00940000161429 #34 ENSGT00730000111075.b #35 ENSGT00940000159242 #37 spretus MODERN SPECIES 19 Pbdc1 (MGP_SPRETEiJ_G0034483) #7 Magee1 (MGP_SPRETEiJ_G0034484) #8 Fgf16 (MGP_SPRETEiJ_G0034486) #9 Atrx (MGP_SPRETEiJ_G0034487) #10 Magt1 (MGP_SPRETEiJ_G0034488) #11 Cox7b (MGP_SPRETEiJ_G0034489) #12 Atp7a (MGP_SPRETEiJ_G0034490) #13 Tlr13 (MGP_SPRETEiJ_G0034491) #14 Pgk1 (MGP_SPRETEiJ_G0034492) #15 Taf9b (MGP_SPRETEiJ_G0034493) #16 Cysltr1 (MGP_SPRETEiJ_G0034495) #17 Gm5127 (MGP_SPRETEiJ_G0034496) #18 Rtl3 (MGP_SPRETEiJ_G0034497) #19 Lpar4 (MGP_SPRETEiJ_G0034498) #20 P2ry10 (MGP_SPRETEiJ_G0034499) #21 P2ry10b (MGP_SPRETEiJ_G0034500) #22 Gpr174 (MGP_SPRETEiJ_G0034501) #23 Itm2a (MGP_SPRETEiJ_G0034502) #24 Tbx22 (MGP_SPRETEiJ_G0034503) #25 Chmp1b2 (MGP_SPRETEiJ_G0034504) #26 Tent5d (MGP_SPRETEiJ_G0034505) #27 MGP_SPRETEiJ_G0034506 #28 MGP_SPRETEiJ_G0034507 #29 MGP_SPRETEiJ_G0034508 #30 MGP_SPRETEiJ_G0034509 #31 Sh3bgrl (MGP_SPRETEiJ_G0034510) #32 Gm6377 (MGP_SPRETEiJ_G0034511) #33 Pou3f4 (MGP_SPRETEiJ_G0034512) #34 Cylc1 (MGP_SPRETEiJ_G0034513) #35 MGP_SPRETEiJ_G0034514 #36 Rps6ka6 (MGP_SPRETEiJ_G0034515) #37 Steppe mouse MODERN SPECIES 2165 P2ry10b (ENSMSIG00000020509) #22 Gpr174 (ENSMSIG00000020497) #23 Mouse MODERN SPECIES 37 Fgf16 (ENSMUSG00000031230) #9 Atrx (ENSMUSG00000031229) #10 Magt1 (ENSMUSG00000031232) #11 Cox7b (ENSMUSG00000031231) #12 Atp7a (ENSMUSG00000033792) #13 Tlr13 (ENSMUSG00000033777) #14 Pgk1 (ENSMUSG00000062070) #15 Taf9b (ENSMUSG00000047242) #16 Fnd3c2 (ENSMUSG00000073012) Fndc3c1 (ENSMUSG00000033737) Cysltr1 (ENSMUSG00000052821) #17 Gm5127 (ENSMUSG00000073010) #18 Rtl3 (ENSMUSG00000047686) #19 Lpar4 (ENSMUSG00000049929) #20 P2ry10 (ENSMUSG00000050921) #21 P2ry10b (ENSMUSG00000054293) #22 Gpr174 (ENSMUSG00000073008) #23 Itm2a (ENSMUSG00000031239) #24 Tbx22 (ENSMUSG00000031241) #25 Chmp1b2 (ENSMUSG00000031242) #26 Tent5d (ENSMUSG00000073007) #27 Wmp (ENSMUSG00000073006) #28 Brwd3 (ENSMUSG00000063663) #30 Hmgn5 (ENSMUSG00000031245) #31 Sh3bgrl (ENSMUSG00000031246) #32 Gm6377 (ENSMUSG00000048621) #33 Pou3f4 (ENSMUSG00000056854) #34 Cylc1 (ENSMUSG00000073001) #35 Rps6ka6 (ENSMUSG00000025665) #37 Hdx (ENSMUSG00000034551) Gm45194 (ENSMUSG00000109156) Ryukyu mouse MODERN SPECIES 19 Cypt2 (MGP_CAROLIEiJ_G0033321) Fgf16 (MGP_CAROLIEiJ_G0033322) #9 Atrx (MGP_CAROLIEiJ_G0033323) #10 Magt1 (MGP_CAROLIEiJ_G0033324) #11 Cox7b (MGP_CAROLIEiJ_G0033325) #12 Atp7a (MGP_CAROLIEiJ_G0033326) #13 MGP_CAROLIEiJ_G0033327 #14 MGP_CAROLIEiJ_G0033328 #15 Taf9b (MGP_CAROLIEiJ_G0033329) #16 Fndc3c1 (MGP_CAROLIEiJ_G0033330) Cysltr1 (MGP_CAROLIEiJ_G0033331) #17 Gm5127 (MGP_CAROLIEiJ_G0033332) #18 Rtl3 (MGP_CAROLIEiJ_G0033333) #19 Lpar4 (MGP_CAROLIEiJ_G0033334) #20 P2ry10 (MGP_CAROLIEiJ_G0033335) #21 P2ry10b (MGP_CAROLIEiJ_G0033336) #22 Gpr174 (MGP_CAROLIEiJ_G0033337) #23 Itm2a (MGP_CAROLIEiJ_G0033338) #24 Tbx22 (MGP_CAROLIEiJ_G0033339) #25 Chmp1b2 (MGP_CAROLIEiJ_G0033340) #26 Tent5d (MGP_CAROLIEiJ_G0033341) #27 Wmp (MGP_CAROLIEiJ_G0033342) #28 MGP_CAROLIEiJ_G0033343 #29 Brwd3 (MGP_CAROLIEiJ_G0033344) #30 MGP_CAROLIEiJ_G0033345 #31 Sh3bgrl (MGP_CAROLIEiJ_G0033346) #32 Gm6377 (MGP_CAROLIEiJ_G0033347) #33 Pou3f4 (MGP_CAROLIEiJ_G0033348) #34 Cylc1 (MGP_CAROLIEiJ_G0033349) #35 Rps6ka6 (MGP_CAROLIEiJ_G0033350) #37 Hdx (MGP_CAROLIEiJ_G0033351) Shrew mouse MODERN SPECIES 23 Magee1 (MGP_PahariEiJ_G0031857) #8 Fgf16 (MGP_PahariEiJ_G0031858) #9 Atrx (MGP_PahariEiJ_G0031859) #10 Magt1 (MGP_PahariEiJ_G0031860) #11 Cox7b (MGP_PahariEiJ_G0031861) #12 Atp7a (MGP_PahariEiJ_G0031862) #13 MGP_PahariEiJ_G0031863 #14 MGP_PahariEiJ_G0031864 #15 Taf9b (MGP_PahariEiJ_G0031865) #16 Fndc3c1 (MGP_PahariEiJ_G0031866) Cysltr1 (MGP_PahariEiJ_G0031867) #17 Gm5127 (MGP_PahariEiJ_G0031868) #18 Rtl3 (MGP_PahariEiJ_G0031869) #19 Lpar4 (MGP_PahariEiJ_G0031870) #20 P2ry10 (MGP_PahariEiJ_G0031871) #21 P2ry10b (MGP_PahariEiJ_G0031872) #22 Gpr174 (MGP_PahariEiJ_G0031873) #23 Itm2a (MGP_PahariEiJ_G0031874) #24 Tbx22 (MGP_PahariEiJ_G0031875) #25 Chmp1b2 (MGP_PahariEiJ_G0031876) #26 Tent5d (MGP_PahariEiJ_G0031877) #27 Wmp (MGP_PahariEiJ_G0031878) #28 MGP_PahariEiJ_G0031879 #29 Brwd3 (MGP_PahariEiJ_G0031880) #30 Hmgn5 (MGP_PahariEiJ_G0031881) #31 Sh3bgrl (MGP_PahariEiJ_G0031882) #32 Gm6377 (MGP_PahariEiJ_G0031883) #33 MGP_PahariEiJ_G0031884 MGP_PahariEiJ_G0031886 MGP_PahariEiJ_G0031885 MGP_PahariEiJ_G0031887 Rat MODERN SPECIES 46 ENSRNOG00000055485 Atp7a (ENSRNOG00000061367) #13 Tlr13 (ENSRNOG00000061403) Pgk1 (ENSRNOG00000058249) #15 Taf9b (ENSRNOG00000061102) #16 LOC100359505 (ENSRNOG00000032807) ENSRNOG00000069323 LOC120099223 (ENSRNOG00000068306) Fndc3c1 (ENSRNOG00000002451) Cysltr1 (ENSRNOG00000037845) #17 LOC100359656 (ENSRNOG00000029090) #18 RGD1560821 (ENSRNOG00000023733) Rtl3 (ENSRNOG00000002429) #19 Lpar4 (ENSRNOG00000002428) #20 P2ry10 (ENSRNOG00000037839) #21 P2ry10b (ENSRNOG00000037838) #22 Gpr174 (ENSRNOG00000032970) #23 Itm2a (ENSRNOG00000002365) #24 Tbx22 (ENSRNOG00000002346) #25 Chmp1b2 (ENSRNOG00000002323) #26 Tent5d (ENSRNOG00000023637) #27 RGD1561552 (ENSRNOG00000037827) #28 Rfk-ps1 (ENSRNOG00000066048) RGD1562871 (ENSRNOG00000033458) LOC103690878 (ENSRNOG00000031283) #29 Brwd3 (ENSRNOG00000002291) #30 Hmgn5 (ENSRNOG00000029078) #31 Sh3bgrl (ENSRNOG00000069303) #32 RGD1562039 (ENSRNOG00000030519) LOC681325 (ENSRNOG00000023005) #33 LOC102554937 (ENSRNOG00000068802) Cricetidae ANCESTRAL SPECIES 8 ENSGT00940000163182 #8 ENSGT00940000160087 #9 ENSGT00940000155902 #10 ENSGT00390000012030.b.a #11 ENSGT00390000012178.g.b #12 ENSGT00940000159568 #13 ENSGT00940000163576 ENSGT00390000008820.e.b.t.a #15 ENSGT00940000161697 #16 ENSGT00940000163592 ENSGT01100000263536.B.c.b #17 ENSGT01050000245003 #18 ENSGT00940000163808 #19 ENSGT01040000240444.A.a.a.a.b #20 ENSGT01100000263536.A.a.a.b #21 ENSGT01100000263536.A.a.a.a #22 ENSGT01030000234518.D #23 ENSGT00950000183115.b.b #24 ENSGT00940000161206 #25 ENSGT00950000182832.D.b #26 ENSGT00940000162488 #27 ENSGT00950000182962.b.b.a #28 ENSGT01050000244948.d #29 ENSGT00950000183107.a.b.b #30 ENSGT00730000111570 #31 ENSGT00940000156017 #32 ENSGT00940000165353 ENSGT00390000011425.A #33 ENSGT00940000161429 #34 ENSGT00730000111075.b #35 ENSGT00940000159242 #37 Cricetinae ANCESTRAL SPECIES 17 ENSGT00940000163182 #8 ENSGT00940000160087 #9 ENSGT00940000155902 #10 ENSGT00390000012030.b.a #11 ENSGT00390000012178.g.b #12 ENSGT00940000159568 #13 ENSGT00940000164586.b ENSGT00390000008820.e.b.t.a.a #15 ENSGT00940000161697 #16 ENSGT00940000163592 ENSGT01100000263536.B.c.b #17 ENSGT01050000245003 #18 ENSGT00940000163808 #19 ENSGT01040000240444.A.a.a.a.b #20 ENSGT01100000263536.A.a.a.b #21 ENSGT01100000263536.A.a.a.a #22 ENSGT01030000234518.D #23 ENSGT00950000183115.b.b #24 ENSGT00940000161206 #25 ENSGT00950000182832.D.b #26 ENSGT00940000162488 #27 ENSGT00950000182962.b.b.a #28 ENSGT01050000244948.d #29 ENSGT00950000183107.a.b.b #30 ENSGT00730000111570 #31 ENSGT00940000156017 #32 ENSGT00940000161429 #34 ENSGT01030000235438 ENSGT00730000111075.b #35 ENSGT00940000159242 #37 ENSGT00390000008591 Golden Hamster MODERN SPECIES 826 ENSMAUG00000019451 Fgf16 (ENSMAUG00000018532) #9 Atrx (ENSMAUG00000008243) #10 Magt1 (ENSMAUG00000013417) #11 Cox7b (ENSMAUG00000008542) #12 Atp7a (ENSMAUG00000020233) #13 ENSMAUG00000017499 Pgk1 (ENSMAUG00000014623) #15 ENSMAUG00000012589 #16 ENSMAUG00000009059 Cysltr1 (ENSMAUG00000016351) #17 Rtl3 (ENSMAUG00000011823) #19 Lpar4 (ENSMAUG00000014705) #20 P2ry10 (ENSMAUG00000001792) #21 ENSMAUG00000001708 #22 Gpr174 (ENSMAUG00000002554) #23 Itm2a (ENSMAUG00000009143) #24 ENSMAUG00000004575 Tbx22 (ENSMAUG00000008767) #25 Chinese hamster chok1gshd MODERN SPECIES 16 Magee1 (ENSCGRG00001014880) #8 Fgf16 (ENSCGRG00001020173) #9 Atrx (ENSCGRG00001010011) #10 Magt1 (ENSCGRG00001023814) #11 ENSCGRG00001021912 #12 Atp7a (ENSCGRG00001011757) #13 ENSCGRG00001022224 PGK1 (ENSCGRG00001005933) #15 Taf9b (ENSCGRG00001017738) #16 ENSCGRG00001002344 Cysltr1 (ENSCGRG00001010323) #17 Gm5127 (ENSCGRG00001007445) #18 Rtl3 (ENSCGRG00001015952) #19 Lpar4 (ENSCGRG00001006727) #20 P2ry10 (ENSCGRG00001007928) #21 P2ry10b (ENSCGRG00001011228) #22 Gpr174 (ENSCGRG00001015402) #23 Itm2a (ENSCGRG00001008417) #24 ENSCGRG00001000247 Tbx22 (ENSCGRG00001019725) #25 Chmp1b2 (ENSCGRG00001005877) #26 Tent5d (ENSCGRG00001012351) #27 Wmp (ENSCGRG00001017986) #28 ENSCGRG00001004740 #29 Brwd3 (ENSCGRG00001016099) #30 Hmgn5 (ENSCGRG00001013973) #31 Sh3bgrl (ENSCGRG00001000603) #32 ENSCGRG00001011016 Gm6377 (ENSCGRG00001012169) #33 ENSCGRG00001024450 Pou3f4 (ENSCGRG00001011962) #34 Cricetidae_B ANCESTRAL SPECIES 47 ENSGT00390000016333 #7 ENSGT00940000163182 #8 ENSGT00940000160087 #9 ENSGT00940000155902 #10 ENSGT00390000012030.b.a #11 ENSGT00390000012178.g.b #12 ENSGT00940000159568 #13 ENSGT00940000163576 ENSGT00390000008820.e.b.t.a #15 ENSGT00940000161697 #16 ENSGT00940000163592 ENSGT01100000263536.B.c.b #17 ENSGT00940000163808 #19 ENSGT01040000240444.A.a.a.a.b #20 ENSGT01100000263536.A.a.a.b #21 ENSGT01100000263536.A.a.a.a #22 ENSGT01030000234518.D #23 ENSGT00950000183115.b.b #24 ENSGT00940000161206 #25 ENSGT00950000182832.D.b #26 ENSGT00940000162488 #27 ENSGT00950000182962.b.b.a #28 ENSGT01050000244948.d #29 ENSGT00950000183107.a.b.b #30 ENSGT00730000111570 #31 ENSGT00940000156017 #32 ENSGT00940000165353 ENSGT00390000011425.A #33 ENSGT00940000161429 #34 ENSGT00730000111075.b #35 ENSGT00940000159242 #37 Prairie vole MODERN SPECIES 148 ENSMOCG00000000200 #10 ENSMOCG00000016097 ENSMOCG00000015369 Magt1 (ENSMOCG00000005129) #11 Cox7b (ENSMOCG00000000328) #12 Atp7a (ENSMOCG00000002028) #13 ENSMOCG00000010730 ENSMOCG00000000983 #15 ENSMOCG00000017397 #16 ENSMOCG00000015345 ENSMOCG00000011961 Cysltr1 (ENSMOCG00000001518) #17 Rtl3 (ENSMOCG00000017247) #19 Lpar4 (ENSMOCG00000015702) #20 P2ry10 (ENSMOCG00000014359) #21 P2ry10b (ENSMOCG00000012027) #22 Northern American deer mouse MODERN SPECIES 475 ENSPEMG00000030156 ENSPEMG00000030780 #8 Fgf16 (ENSPEMG00000021916) #9 Atrx (ENSPEMG00000022358) #10 ENSPEMG00000016457 Magt1 (ENSPEMG00000021915) #11 ENSPEMG00000012083 #12 Atp7a (ENSPEMG00000006787) #13 ENSPEMG00000012872 Taf9b (ENSPEMG00000022582) #16 ENSPEMG00000021468 ENSPEMG00000026887 Cysltr1 (ENSPEMG00000023120) #17 Lpar4 (ENSPEMG00000030102) #20 P2ry10 (ENSPEMG00000023462) #21 P2ry10b (ENSPEMG00000024642) #22 ENSPEMG00000004229 Gpr174 (ENSPEMG00000005742) #23 Itm2a (ENSPEMG00000023946) #24 Tbx22 (ENSPEMG00000023383) #25 Chmp1b2 (ENSPEMG00000022335) #26 Tent5d (ENSPEMG00000031184) #27 Wmp (ENSPEMG00000027638) #28 ENSPEMG00000031328 #29 Brwd3 (ENSPEMG00000022305) #30 Sh3bgrl (ENSPEMG00000027781) #32 ENSPEMG00000024318 Gm6377 (ENSPEMG00000023246) #33 ENSPEMG00000025843 Pou3f4 (ENSPEMG00000003663) #34 Cylc1 (ENSPEMG00000017301) #35 Upper Galilee mountains blind mole rat MODERN SPECIES 1001 Atrx (ENSNGAG00000023904) #10 Magt1 (ENSNGAG00000022711) #11 ENSNGAG00000012256 #12 ENSNGAG00000023001 ENSNGAG00000014750 Atp7a (ENSNGAG00000012201) #13 ENSNGAG00000012711 ENSNGAG00000011781 #15 ENSNGAG00000007200 #16 ENSNGAG00000007438 ENSNGAG00000022530 Cysltr1 (ENSNGAG00000010412) #17 Rtl3 (ENSNGAG00000002851) #19 Lpar4 (ENSNGAG00000024167) #20 P2ry10 (ENSNGAG00000011583) #21 ENSNGAG00000020015 #22 Gpr174 (ENSNGAG00000012600) #23 Itm2a (ENSNGAG00000024161) #24 Kangaroo rat MODERN SPECIES 435 Uprt (ENSDORG00000015956) Zdhhc15 (ENSDORG00000028824) Magee1 (ENSDORG00000026617) #8 Fgf16 (ENSDORG00000028103) #9 Atrx (ENSDORG00000027540) #10 Magt1 (ENSDORG00000027252) #11 Cox7b (ENSDORG00000025171) #12 Atp7a (ENSDORG00000025464) #13 Pgk1 (ENSDORG00000025747) #15 ENSDORG00000029555 #16 Cysltr1 (ENSDORG00000025755) #17 Gm5127 (ENSDORG00000026330) #18 Rtl3 (ENSDORG00000029995) #19 Lpar4 (ENSDORG00000025204) #20 P2ry10 (ENSDORG00000004365) #21 P2ry10b (ENSDORG00000028974) #22 Gpr174 (ENSDORG00000011385) #23 Itm2a (ENSDORG00000003742) #24 Tbx22 (ENSDORG00000009980) #25 ENSDORG00000014964 Rodentia_A ANCESTRAL SPECIES 9 ENSGT00940000163182 #8 ENSGT00940000160087 #9 ENSGT00940000155902 #10 ENSGT00390000012030.b.a #11 ENSGT00390000012178.g.b #12 ENSGT00940000159568 #13 ENSGT00940000163576 ENSGT00390000008820.e.b #15 ENSGT00940000161697 #16 ENSGT00940000163592 ENSGT01100000263536.B.c.b #17 ENSGT01050000245003 #18 ENSGT00940000163808 #19 ENSGT01040000240444.A.a.a.a.b #20 ENSGT01100000263536.A.a.a.b #21 ENSGT01100000263536.A.a.a.a #22 ENSGT01030000234518.D #23 ENSGT00950000183115.b.b #24 ENSGT00940000161206 #25 ENSGT00950000182832.D.b #26 ENSGT00940000162488 #27 ENSGT00950000183107.a.b.b #30 ENSGT00730000111570 #31 ENSGT00940000156017 #32 ENSGT00940000165353 ENSGT00390000011425.A #33 ENSGT00940000164351 ENSGT00940000161429 #34 ENSGT00730000111075.b #35 ENSGT00940000159242 #37 ENSGT00390000008591 Sciuridae ANCESTRAL SPECIES 35 ENSGT00390000015009.h ENSGT00940000160087 #9 ENSGT00940000155902 #10 ENSGT00390000012030.b.a #11 ENSGT00390000012178.g.b #12 ENSGT00940000159568 #13 ENSGT00940000163576 ENSGT00390000008820.e.b #15 ENSGT00940000161697 #16 ENSGT00940000163592 ENSGT01100000263536.B.c.b #17 ENSGT01050000245003 #18 ENSGT00940000163808 #19 ENSGT01040000240444.A.a.a.a.b #20 ENSGT01100000263536.A.a.a.b #21 ENSGT01100000263536.A.a.a.a #22 ENSGT01030000234518.D #23 ENSGT00950000183115.b.b #24 ENSGT00940000161206 #25 ENSGT00950000182832.D.b #26 ENSGT00940000162488 #27 ENSGT00950000183107.a.b.b #30 ENSGT00730000111570 #31 ENSGT00940000156017 #32 ENSGT00940000165353 ENSGT00390000011425.A #33 ENSGT00940000164351 ENSGT00940000161429 #34 ENSGT00730000111075.b #35 ENSGT00940000159242 #37 ENSGT00390000008591 Marmotini ANCESTRAL SPECIES 78 ENSGT00390000008820.e.b #15 ENSGT00940000161697 #16 ENSGT00940000163592 ENSGT01100000263536.B.c.b #17 ENSGT01050000245003 #18 ENSGT00940000163808 #19 ENSGT01040000240444.A.a.a.a.b #20 ENSGT01100000263536.A.a.a.b #21 ENSGT01100000263536.A.a.a.a #22 ENSGT01030000234518.D #23 ENSGT00950000183115.b.b #24 ENSGT00940000161206 #25 ENSGT00950000182832.D.b #26 ENSGT00940000162488 #27 ENSGT00950000183107.a.b.b #30 ENSGT00730000111570 #31 ENSGT00940000156017 #32 ENSGT00940000165353 ENSGT00390000011425.A #33 ENSGT00940000164351 ENSGT00940000161429 #34 ENSGT00730000111075.b #35 ENSGT00940000159242 #37 ENSGT00390000008591 Alpin marmot MODERN SPECIES 78 ENSMMMG00000011576 #18 RTL3 (ENSMMMG00000011558) #19 LPAR4 (ENSMMMG00000011556) #20 P2RY10 (ENSMMMG00000011546) #21 ENSMMMG00000011538 #22 GPR174 (ENSMMMG00000011530) #23 ITM2A (ENSMMMG00000011491) #24 ENSMMMG00000011489 ENSMMMG00000011488 TBX22 (ENSMMMG00000011419) #25 ENSMMMG00000011394 #26 TENT5D (ENSMMMG00000011385) #27 ENSMMMG00000011351 ENSMMMG00000011334 #31 SH3BGRL (ENSMMMG00000011328) #32 ENSMMMG00000011323 ENSMMMG00000011315 #33 ENSMMMG00000011302 CYLC1 (ENSMMMG00000011257) #35 RPS6KA6 (ENSMMMG00000011222) #37 Marmotini_b ANCESTRAL SPECIES 121 ENSGT00390000008820.e.b #15 ENSGT00940000161697 #16 ENSGT00940000163592 ENSGT00390000016617.j ENSGT01100000263536.B.c.b #17 ENSGT01050000245003 #18 ENSGT00940000163808 #19 ENSGT01040000240444.A.a.a.a.b #20 ENSGT01100000263536.A.a.a.b #21 ENSGT01100000263536.A.a.a.a #22 ENSGT01030000234518.D #23 ENSGT00950000183115.b.b #24 ENSGT00940000161206 #25 ENSGT00940000166733 ENSGT00940000162488 #27 ENSGT00390000015930.e.b ENSGT00950000183107.a.b.b #30 ENSGT00730000111570 #31 ENSGT00940000156017 #32 ENSGT00940000165353 ENSGT00390000011425.A #33 ENSGT00940000164351 ENSGT00940000161429 #34 ENSGT00940000159242 #37 ENSGT00390000008591 Arctic ground squirrel MODERN SPECIES 452 ENSUPAG00010008171 PGK1 (ENSUPAG00010008138) #15 TAF9B (ENSUPAG00010008118) #16 ENSUPAG00010007988 ENSUPAG00010007966 CYSLTR1 (ENSUPAG00010007962) #17 ENSUPAG00010007949 #18 RTL3 (ENSUPAG00010007942) #19 LPAR4 (ENSUPAG00010007932) #20 P2RY10 (ENSUPAG00010007928) #21 ENSUPAG00010007926 #22 GPR174 (ENSUPAG00010007918) #23 ITM2A (ENSUPAG00010007895) #24 Eurasian red squirrel MODERN SPECIES 156 ENSSVLG00005012574 ENSSVLG00005012533 ATP7A (ENSSVLG00005012051) #13 ENSSVLG00005011999 ENSSVLG00005011883 #15 TAF9B (ENSSVLG00005011826) #16 ENSSVLG00005011533 ENSSVLG00005011494 CYSLTR1 (ENSSVLG00005011474) #17 ENSSVLG00005011444 ENSSVLG00005011426 #18 RTL3 (ENSSVLG00005011379) #19 LPAR4 (ENSSVLG00005011359) #20 ENSSVLG00005011328 P2RY10 (ENSSVLG00005011313) #21 ENSSVLG00005011291 #22 GPR174 (ENSSVLG00005011269) #23 ITM2A (ENSSVLG00005011136) #24 TBX22 (ENSSVLG00005011035) #25 ENSSVLG00005010993 ENSSVLG00005010961 TENT5D (ENSSVLG00005010945) #27 ENSSVLG00005010912 BRWD3 (ENSSVLG00005010574) #30 ENSSVLG00005010444 SH3BGRL (ENSSVLG00005010419) #32 ENSSVLG00005010369 ENSSVLG00005010356 #33 ENSSVLG00005010323 ENSSVLG00005024677 POU3F4 (ENSSVLG00005024640) #34 Hystricomorpha ANCESTRAL SPECIES 11 ENSGT00940000159746 ENSGT00940000156281 ENSGT01020000230412.D ENSGT00940000158214 ENSGT00390000016333 #7 ENSGT00940000163182 #8 ENSGT00940000160087 #9 ENSGT00940000155902 #10 ENSGT00390000012030.b.a #11 ENSGT00390000012178.g.a.a ##12 ENSGT00940000159568 #13 ENSGT00390000008820.e.b #15 ENSGT00940000161697 #16 ENSGT01100000263536.B.c.b #17 ENSGT01100000263536.A.a.a.b #21 ENSGT01100000263536.A.a.a.a #22 ENSGT01030000234518.D #23 ENSGT00950000183115.b.b #24 ENSGT00940000161206 #25 ENSGT00950000182832.D.b #26 ENSGT00940000162488 #27 ENSGT00950000183107.a.b.b #30 ENSGT00940000156017 #32 ENSGT00390000011425.A #33 ENSGT00940000161429 #34 ENSGT00730000111075.b #35 ENSGT00940000159242 #37 ENSGT00390000008591 ENSGT00530000063666.a ENSGT00520000059318 ENSGT00940000159611 Naked mole-rat female MODERN SPECIES 31 GLA (ENSHGLG00000001617) BTK (ENSHGLG00000000626) ENSHGLG00000046185 TAF7L (ENSHGLG00000008998) ENSHGLG00000045650 DRP2 (ENSHGLG00000002400) ENSHGLG00000002339 TMEM35A (ENSHGLG00000001359) ENSHGLG00000044261 ENSHGLG00000032087 XKRX (ENSHGLG00000001130) NOX1 (ENSHGLG00000001560) ENSHGLG00000000659 ENSHGLG00000034411 ENSHGLG00000001881 #21 P2RY10 (ENSHGLG00000001264) #22 ENSHGLG00000001279 ITM2A (ENSHGLG00000001163) #24 ENSHGLG00000001147 TBX22 (ENSHGLG00000001099) #25 ENSHGLG00000000868 #26 TENT5D (ENSHGLG00000020434) #27 ENSHGLG00000041421 BRWD3 (ENSHGLG00000002063) #30 ENSHGLG00000037295 ENSHGLG00000007722 #32 ENSHGLG00000007062 ENSHGLG00000020488 ENSHGLG00000020202 ENSHGLG00000005940 ENSHGLG00000050061 Hystricomorpha_a ANCESTRAL SPECIES 51 ENSGT00940000159746 ENSGT00940000156281 ENSGT01020000230412.D ENSGT00940000158214 ENSGT00390000016333 #7 ENSGT00940000163182 #8 ENSGT00940000160087 #9 ENSGT00940000155902 #10 ENSGT00390000012030.b.a #11 ENSGT00390000012178.g.a.a ##12 ENSGT00940000159568 #13 ENSGT00390000008820.e.b #15 ENSGT00940000161697 #16 ENSGT01100000263536.B.c.b #17 ENSGT01100000263536.A.a.a.b #21 ENSGT01100000263536.A.a.a.a #22 ENSGT01030000234518.D #23 ENSGT00950000183115.b.b #24 ENSGT00940000161206 #25 ENSGT00950000182832.D.b #26 ENSGT00950000183107.a.b.b #30 ENSGT00940000156017 #32 ENSGT00390000011425.A #33 ENSGT00940000161429 #34 ENSGT00730000111075.b #35 ENSGT00940000159242 #37 ENSGT00390000008591 ENSGT00530000063666.a ENSGT00520000059318 ENSGT00940000159611 ENSGT00390000000141 Hystricomorpha_b ANCESTRAL SPECIES 123 ENSGT00390000016333 #7 ENSGT00940000163182 #8 ENSGT00940000160087 #9 ENSGT00940000155902 #10 ENSGT00390000012030.b.a #11 ENSGT00390000012178.g.a.a ##12 ENSGT00940000159568 #13 ENSGT00390000008820.e.b.h #15 ENSGT00940000161697 #16 ENSGT01100000263536.A.a.a.b #21 ENSGT01100000263536.A.a.a.a #22 ENSGT01030000234518.D #23 ENSGT00950000183115.b.b #24 Long-tailed chinchilla MODERN SPECIES 264 MAGEE1 (ENSCLAG00000017388) #8 FGF16 (ENSCLAG00000000096) #9 ATRX (ENSCLAG00000000229) #10 MAGT1 (ENSCLAG00000000546) #11 ENSCLAG00000000296 ##12 ATP7A (ENSCLAG00000000444) #13 ENSCLAG00000000146 #15 TAF9B (ENSCLAG00000000199) #16 P2RY10 (ENSCLAG00000000218) #21 ENSCLAG00000000222 #22 GPR174 (ENSCLAG00000000259) #23 ITM2A (ENSCLAG00000000574) #24 Lagomorpha ANCESTRAL SPECIES 95 ENSGT00390000016333 #7 ENSGT00940000163182 #8 ENSGT00940000160087 #9 ENSGT00940000155902 #10 ENSGT00390000012030.b.a #11 ENSGT00390000012178.g.a.b.b ##12 ENSGT00940000159568 #13 ENSGT00940000163576 ENSGT00390000008820.e.b #15 ENSGT00940000161697 #16 ENSGT00940000163592 ENSGT01100000263536.B.c.b #17 ENSGT01100000263536.A.a.a.b #21 ENSGT01100000263536.A.a.a.a #22 ENSGT01030000234518.D #23 ENSGT00950000183115.b.b #24 ENSGT01050000244948.d #29 ENSGT00950000183107.a.b.b #30 ENSGT00730000111570 #31 ENSGT00940000156017 #32 ENSGT00940000165353 ENSGT00390000011425.A #33 ENSGT00940000164351 ENSGT00390000017581.a ENSGT00940000161429 #34 ENSGT00730000111075.b #35 ENSGT00940000159242 #37 ENSGT00390000008591 ENSGT00530000067269 Rabbit MODERN SPECIES 1401 ENSOCUG00000035239 FGF16 (ENSOCUG00000007576) #9 ATRX (ENSOCUG00000007579) #10 MAGT1 (ENSOCUG00000000203) #11 ENSOCUG00000039084 ENSOCUG00000036425 ##12 ATP7A (ENSOCUG00000014160) #13 ENSOCUG00000023649 ENSOCUG00000014726 #15 ENSOCUG00000014717 #16 ENSOCUG00000021293 CYSLTR1 (ENSOCUG00000016192) #17 ENSOCUG00000024148 RTL3 (ENSOCUG00000025689) #19 P2RY10 (ENSOCUG00000014507) #21 ENSOCUG00000024395 #22 GPR174 (ENSOCUG00000005049) #23 ITM2A (ENSOCUG00000008651) #24 ENSOCUG00000033641 TBX22 (ENSOCUG00000013685) #25 ENSOCUG00000024762 TENT5D (ENSOCUG00000001367) #27 ENSOCUG00000021400 ENSOCUG00000022541 ENSOCUG00000031557 ENSOCUG00000026656 #29 BRWD3 (ENSOCUG00000005170) #30 ENSOCUG00000038725 HMGN5 (ENSOCUG00000029345) #31 SH3BGRL (ENSOCUG00000014035) #32 ENSOCUG00000028103 Tree shrew MODERN SPECIES 8796 ENSTBEG00000000619 #22