Mammalia	ANCESTRAL SPECIES	220																ENSGT01100000263536.A.a.a.a #22	ENSGT01100000263536.A.a.b ##22
Theria	ANCESTRAL SPECIES	33	ENSGT00940000156281	ENSGT01020000230412.D	ENSGT00940000158214	ENSGT00940000160087 #9	ENSGT00940000155902 #10	ENSGT00390000012030.b.a #11	ENSGT00390000012178 #12	ENSGT00940000159568 #13	ENSGT00950000183593 #14	ENSGT00940000155097	ENSGT00940000163592	ENSGT01100000263536.B.c.b #17	ENSGT01050000245003 #18	ENSGT01040000240444.A.a.a.a.b #20	ENSGT01100000263536.A.a.a.b #21	ENSGT01100000263536.A.a.a.a #22	ENSGT01030000234518.D #23	ENSGT00950000183115.b.b #24	ENSGT00940000161206 #25	ENSGT00950000182832.D.b #26	ENSGT00940000162488 #27	ENSGT00950000183107.a.b.b #30	ENSGT00940000156017 #32	ENSGT00940000165353	ENSGT00390000011425.A #33	ENSGT00940000164351	ENSGT00390000017581.a	ENSGT00940000161429 #34	ENSGT00730000111075 #35	ENSGT00940000159242 #37	ENSGT00390000008591
Eutheria	ANCESTRAL SPECIES	16	ENSGT01020000230412.D	ENSGT00940000158214	ENSGT00940000160087 #9	ENSGT00940000155902 #10	ENSGT00390000012030.b.a #11	ENSGT00390000012178.g #12	ENSGT00940000159568 #13	ENSGT00940000163576	ENSGT00390000008820.e.b #15	ENSGT00940000161697 #16	ENSGT00940000163592	ENSGT01100000263536.B.c.b #17	ENSGT01050000245003 #18	ENSGT01040000240444.A.a.a.a.b #20	ENSGT01100000263536.A.a.a.b #21	ENSGT01100000263536.A.a.a.a #22	ENSGT01030000234518.D #23	ENSGT00950000183115.b.b #24	ENSGT00940000161206 #25	ENSGT00950000182832.D.b #26	ENSGT00940000162488 #27	ENSGT00950000183107.a.b.b #30	ENSGT00730000111570 #31	ENSGT00940000156017 #32	ENSGT00940000165353	ENSGT00390000011425.A #33	ENSGT00940000164351	ENSGT00390000017581.a	ENSGT00940000161429 #34	ENSGT00730000111075.b #35	ENSGT00940000159242 #37
Boreoeutheria	ANCESTRAL SPECIES	11	ENSGT00390000016333 #7	ENSGT00940000160087 #9	ENSGT00940000155902 #10	ENSGT00390000012030.b.a #11	ENSGT00390000012178.g.b #12	ENSGT00940000159568 #13	ENSGT00940000163576	ENSGT00390000008820.e.b #15	ENSGT00940000161697 #16	ENSGT00940000163592	ENSGT01100000263536.B.c.b #17	ENSGT01050000245003 #18	ENSGT00940000163808 #19	ENSGT01040000240444.A.a.a.a.b #20	ENSGT01100000263536.A.a.a.b #21	ENSGT01100000263536.A.a.a.a #22	ENSGT01030000234518.D #23	ENSGT00950000183115.b.b #24	ENSGT00940000161206 #25	ENSGT00950000182832.D.b #26	ENSGT00940000162488 #27	ENSGT00950000183107.a.b.b #30	ENSGT00730000111570 #31	ENSGT00940000156017 #32	ENSGT00940000165353	ENSGT00390000011425.A #33	ENSGT00940000164351	ENSGT00390000017581.a	ENSGT00940000161429 #34	ENSGT00730000111075.b #35	ENSGT00940000159242 #37
Euarchontoglires	ANCESTRAL SPECIES	11	ENSGT00940000163182 #8	ENSGT00940000160087 #9	ENSGT00940000155902 #10	ENSGT00390000012030.b.a #11	ENSGT00390000012178.g.b #12	ENSGT00940000159568 #13	ENSGT00940000163576	ENSGT00390000008820.e.b #15	ENSGT00940000161697 #16	ENSGT00940000163592	ENSGT01100000263536.B.c.b #17	ENSGT01050000245003 #18	ENSGT00940000163808 #19	ENSGT01040000240444.A.a.a.a.b #20	ENSGT01100000263536.A.a.a.b #21	ENSGT01100000263536.A.a.a.a #22	ENSGT01030000234518.D #23	ENSGT00950000183115.b.b #24	ENSGT00940000161206 #25	ENSGT00950000182832.D.b #26	ENSGT00940000162488 #27	ENSGT00950000183107.a.b.b #30	ENSGT00730000111570 #31	ENSGT00940000156017 #32	ENSGT00940000165353	ENSGT00390000011425.A #33	ENSGT00940000164351	ENSGT00390000017581.a	ENSGT00940000161429 #34	ENSGT00730000111075.b #35	ENSGT00940000159242 #37
Euarchontoglires_A	ANCESTRAL SPECIES	11	ENSGT00940000163182 #8	ENSGT00940000160087 #9	ENSGT00940000155902 #10	ENSGT00390000012030.b.a #11	ENSGT00390000012178.g.b #12	ENSGT00940000159568 #13	ENSGT00940000163576	ENSGT00390000008820.e.b #15	ENSGT00940000161697 #16	ENSGT00940000163592	ENSGT01100000263536.B.c.b #17	ENSGT01050000245003 #18	ENSGT00940000163808 #19	ENSGT01040000240444.A.a.a.a.b #20	ENSGT01100000263536.A.a.a.b #21	ENSGT01100000263536.A.a.a.a #22	ENSGT01030000234518.D #23	ENSGT00950000183115.b.b #24	ENSGT00940000161206 #25	ENSGT00950000182832.D.b #26	ENSGT00940000162488 #27	ENSGT01050000244948.d #29	ENSGT00950000183107.a.b.b #30	ENSGT00730000111570 #31	ENSGT00940000156017 #32	ENSGT00940000165353	ENSGT00390000011425.A #33	ENSGT00940000164351	ENSGT00390000017581.a	ENSGT00940000161429 #34	ENSGT00730000111075.b #35
Glires	ANCESTRAL SPECIES	10	ENSGT00940000163182 #8	ENSGT00940000160087 #9	ENSGT00940000155902 #10	ENSGT00390000012030.b.a #11	ENSGT00390000012178.g.b #12	ENSGT00940000159568 #13	ENSGT00940000163576	ENSGT00390000008820.e.b #15	ENSGT00940000161697 #16	ENSGT00940000163592	ENSGT01100000263536.B.c.b #17	ENSGT01050000245003 #18	ENSGT00940000163808 #19	ENSGT01040000240444.A.a.a.a.b #20	ENSGT01100000263536.A.a.a.b #21	ENSGT01100000263536.A.a.a.a #22	ENSGT01030000234518.D #23	ENSGT00950000183115.b.b #24	ENSGT00940000161206 #25	ENSGT00950000182832.D.b #26	ENSGT00940000162488 #27	ENSGT01050000244948.d #29	ENSGT00950000183107.a.b.b #30	ENSGT00730000111570 #31	ENSGT00940000156017 #32	ENSGT00940000165353	ENSGT00390000011425.A #33	ENSGT00940000164351	ENSGT00390000017581.a	ENSGT00940000161429 #34	ENSGT00730000111075.b #35
Rodentia	ANCESTRAL SPECIES	10	ENSGT00940000163182 #8	ENSGT00940000160087 #9	ENSGT00940000155902 #10	ENSGT00390000012030.b.a #11	ENSGT00390000012178.g.b #12	ENSGT00940000159568 #13	ENSGT00940000163576	ENSGT00390000008820.e.b #15	ENSGT00940000161697 #16	ENSGT00940000163592	ENSGT01100000263536.B.c.b #17	ENSGT01050000245003 #18	ENSGT00940000163808 #19	ENSGT01040000240444.A.a.a.a.b #20	ENSGT01100000263536.A.a.a.b #21	ENSGT01100000263536.A.a.a.a #22	ENSGT01030000234518.D #23	ENSGT00950000183115.b.b #24	ENSGT00940000161206 #25	ENSGT00950000182832.D.b #26	ENSGT00940000162488 #27	ENSGT01050000244948.d #29	ENSGT00950000183107.a.b.b #30	ENSGT00730000111570 #31	ENSGT00940000156017 #32	ENSGT00940000165353	ENSGT00390000011425.A #33	ENSGT00940000164351	ENSGT00390000017581.a	ENSGT00940000161429 #34	ENSGT00730000111075.b #35
Rodentia_B	ANCESTRAL SPECIES	16	ENSGT00940000163182 #8	ENSGT00940000160087 #9	ENSGT00940000155902 #10	ENSGT00390000012030.b.a #11	ENSGT00390000012178.g.b #12	ENSGT00940000159568 #13	ENSGT00940000163576	ENSGT00390000008820.e.b #15	ENSGT00940000161697 #16	ENSGT00940000163592	ENSGT01100000263536.B.c.b #17	ENSGT01050000245003 #18	ENSGT00940000163808 #19	ENSGT01040000240444.A.a.a.a.b #20	ENSGT01100000263536.A.a.a.b #21	ENSGT01100000263536.A.a.a.a #22	ENSGT01030000234518.D #23	ENSGT00950000183115.b.b #24	ENSGT00940000161206 #25	ENSGT00940000166733	ENSGT00950000185117	ENSGT00950000183107.a.b.b #30	ENSGT00730000111570 #31	ENSGT00940000156017 #32	ENSGT00940000165353	ENSGT00390000011425.A #33	ENSGT00390000017581.a	ENSGT00940000161429 #34	ENSGT00730000111075.b #35	ENSGT00940000159242 #37	ENSGT00390000008591
Myomorpha	ANCESTRAL SPECIES	6	ENSGT00940000163182 #8	ENSGT00940000160087 #9	ENSGT00940000155902 #10	ENSGT00390000012030.b.a #11	ENSGT00390000012178.g.b #12	ENSGT00940000159568 #13	ENSGT00940000163576	ENSGT00390000008820.e.b #15	ENSGT00940000161697 #16	ENSGT00940000163592	ENSGT01100000263536.B.c.b #17	ENSGT01050000245003 #18	ENSGT00940000163808 #19	ENSGT01040000240444.A.a.a.a.b #20	ENSGT01100000263536.A.a.a.b #21	ENSGT01100000263536.A.a.a.a #22	ENSGT01030000234518.D #23	ENSGT00950000183115.b.b #24	ENSGT00940000161206 #25	ENSGT00950000185117	ENSGT00950000183107.a.b.b #30	ENSGT00730000111570 #31	ENSGT00940000156017 #32	ENSGT00940000165353	ENSGT00390000011425.A #33	ENSGT00390000017581.a	ENSGT00940000161429 #34	ENSGT00730000111075.b #35	ENSGT00940000159242 #37	ENSGT00390000008591	ENSGT01000000216433
Muroidea	ANCESTRAL SPECIES	50	ENSGT00940000163182 #8	ENSGT00940000160087 #9	ENSGT00940000155902 #10	ENSGT00390000012030.b.a #11	ENSGT00390000012178.g.b #12	ENSGT00940000159568 #13	ENSGT00940000163576	ENSGT00390000008820.e.b #15	ENSGT00940000161697 #16	ENSGT00940000163592	ENSGT01100000263536.B.c.b #17	ENSGT01050000245003 #18	ENSGT00940000163808 #19	ENSGT01040000240444.A.a.a.a.b #20	ENSGT01100000263536.A.a.a.b #21	ENSGT01100000263536.A.a.a.a #22	ENSGT01030000234518.D #23	ENSGT00950000183115.b.b #24	ENSGT00940000161206 #25	ENSGT00950000185117	ENSGT00950000183107.a.b.b #30
Muroidea_A	ANCESTRAL SPECIES	7	ENSGT00940000163182 #8	ENSGT00940000160087 #9	ENSGT00940000155902 #10	ENSGT00390000012030.b.a #11	ENSGT00390000012178.g.b #12	ENSGT00940000159568 #13	ENSGT00940000163576	ENSGT00390000008820.e.b #15	ENSGT00940000161697 #16	ENSGT00940000163592	ENSGT01100000263536.B.c.b #17	ENSGT01050000245003 #18	ENSGT00940000163808 #19	ENSGT01040000240444.A.a.a.a.b #20	ENSGT01100000263536.A.a.a.b #21	ENSGT01100000263536.A.a.a.a #22	ENSGT01030000234518.D #23	ENSGT00950000183115.b.b #24	ENSGT00940000161206 #25	ENSGT00950000182832.D.b #26	ENSGT00940000162488 #27	ENSGT00950000182962.b.b.a #28	ENSGT01050000244948.d #29	ENSGT00950000183107.a.b.b #30	ENSGT00730000111570 #31	ENSGT00940000156017 #32	ENSGT00940000165353	ENSGT00390000011425.A #33	ENSGT00390000017581.a	ENSGT00940000161429 #34	ENSGT00730000111075.b #35
Murinae	ANCESTRAL SPECIES	14	ENSGT00940000160087 #9	ENSGT00940000155902 #10	ENSGT00390000012030.b.a #11	ENSGT00390000012178.g.b #12	ENSGT00940000159568 #13	ENSGT00950000183593 #14	ENSGT00940000164586.b	ENSGT00390000008820.e.b #15	ENSGT00940000161697 #16	ENSGT00940000163592	ENSGT01100000263536.B.c.b #17	ENSGT01050000245003 #18	ENSGT00940000163808 #19	ENSGT01040000240444.A.a.a.a.b #20	ENSGT01100000263536.A.a.a.b #21	ENSGT01100000263536.A.a.a.a #22	ENSGT01030000234518.D #23	ENSGT00950000183115.b.b #24	ENSGT00940000161206 #25	ENSGT00950000182832.D.b #26	ENSGT00940000162488 #27	ENSGT00950000182962.b.b.a #28	ENSGT01050000244948.d #29	ENSGT00950000183107.a.b.b #30	ENSGT00730000111570 #31	ENSGT00940000156017 #32	ENSGT00940000165353	ENSGT00390000011425.A #33	ENSGT00390000017581.a	ENSGT00940000161429 #34	ENSGT00730000111075.b #35
Mus	ANCESTRAL SPECIES	9	ENSGT00940000163182 #8	ENSGT00940000160087 #9	ENSGT00940000155902 #10	ENSGT00390000012030.b.a #11	ENSGT00390000012178.g.b #12	ENSGT00940000159568 #13	ENSGT00950000183593 #14	ENSGT00390000008820.e.b #15	ENSGT00940000161697 #16	ENSGT00940000163592.c	ENSGT01100000263536.B.c.b #17	ENSGT01050000245003 #18	ENSGT00940000163808 #19	ENSGT01040000240444.A.a.a.a.b #20	ENSGT01100000263536.A.a.a.b #21	ENSGT01100000263536.A.a.a.a #22	ENSGT01030000234518.D #23	ENSGT00950000183115.b.b #24	ENSGT00940000161206 #25	ENSGT00950000182832.D.b #26	ENSGT00940000162488 #27	ENSGT00950000182962.b.b.a #28	ENSGT01050000244948.d #29	ENSGT00950000183107.a.b.b #30	ENSGT00730000111570 #31	ENSGT00940000156017 #32	ENSGT00940000165353	ENSGT00390000011425.A #33	ENSGT00940000161429 #34	ENSGT00730000111075.b #35	ENSGT00940000159242 #37
Mus_A	ANCESTRAL SPECIES	15	ENSGT00390000016779.b.a.a.b	ENSGT00940000160087 #9	ENSGT00940000155902 #10	ENSGT00390000012030.b.a #11	ENSGT00390000012178.g.b.k #12	ENSGT00940000159568 #13	ENSGT00950000183593 #14	ENSGT00390000008820.e.b #15	ENSGT00940000161697 #16	ENSGT00940000163592.c	ENSGT01100000263536.B.c.b #17	ENSGT01050000245003 #18	ENSGT00940000163808 #19	ENSGT01040000240444.A.a.a.a.b #20	ENSGT01100000263536.A.a.a.b #21	ENSGT01100000263536.A.a.a.a #22	ENSGT01030000234518.D #23	ENSGT00950000183115.b.b #24	ENSGT00940000161206 #25	ENSGT00950000182832.D.b #26	ENSGT00940000162488 #27	ENSGT00950000182962.b.b.a #28	ENSGT01050000244948.d #29	ENSGT00950000183107.a.b.b #30	ENSGT00730000111570 #31	ENSGT00940000156017 #32	ENSGT00940000165353	ENSGT00390000011425.A #33	ENSGT00940000161429 #34	ENSGT00730000111075.b #35	ENSGT00940000159242 #37
Mus_B	ANCESTRAL SPECIES	14	ENSGT00390000016779.b.a.a.b	ENSGT00940000160087 #9	ENSGT00940000155902 #10	ENSGT00390000012030.b.a #11	ENSGT00390000012178.g.b.k #12	ENSGT00940000159568 #13	ENSGT00950000183593 #14	ENSGT00390000008820.e.b #15	ENSGT00940000161697 #16	ENSGT00940000163592.c	ENSGT01100000263536.B.c.b #17	ENSGT01050000245003 #18	ENSGT00940000163808 #19	ENSGT01040000240444.A.a.a.a.b #20	ENSGT01100000263536.A.a.a.b #21	ENSGT01100000263536.A.a.a.a #22	ENSGT01030000234518.D #23	ENSGT00950000183115.b.b #24	ENSGT00940000161206 #25	ENSGT00950000182832.D.b #26	ENSGT00940000162488 #27	ENSGT00950000182962.b.b.a #28	ENSGT01050000244948.d #29	ENSGT00950000183107.a.b.b #30	ENSGT00730000111570 #31	ENSGT00940000156017 #32	ENSGT00940000165353	ENSGT00390000011425.A #33	ENSGT00940000161429 #34	ENSGT00730000111075.b #35	ENSGT00940000159242 #37
Mus_C	ANCESTRAL SPECIES	22	ENSGT00390000016333 #7	ENSGT00940000163182 #8	ENSGT00940000160087 #9	ENSGT00940000155902 #10	ENSGT00390000012030.b.a #11	ENSGT00390000012178.g.b.k #12	ENSGT00940000159568 #13	ENSGT00950000183593 #14	ENSGT00390000008820.e.b #15	ENSGT00940000161697 #16	ENSGT01100000263536.B.c.b #17	ENSGT01050000245003 #18	ENSGT00940000163808 #19	ENSGT01040000240444.A.a.a.a.b #20	ENSGT01100000263536.A.a.a.b #21	ENSGT01100000263536.A.a.a.a #22	ENSGT01030000234518.D #23	ENSGT00950000183115.b.b #24	ENSGT00940000161206 #25	ENSGT00950000182832.D.b #26	ENSGT00940000162488 #27	ENSGT00950000182962.b.b.a #28	ENSGT01050000244948.d #29	ENSGT00950000183107.a.b.b #30	ENSGT00730000111570 #31	ENSGT00940000156017 #32	ENSGT00940000165353	ENSGT00390000011425.A #33	ENSGT00940000161429 #34	ENSGT00730000111075.b #35	ENSGT00940000159242 #37
spretus	MODERN SPECIES	19	Pbdc1 (MGP_SPRETEiJ_G0034483) #7	Magee1 (MGP_SPRETEiJ_G0034484) #8	Fgf16 (MGP_SPRETEiJ_G0034486) #9	Atrx (MGP_SPRETEiJ_G0034487) #10	Magt1 (MGP_SPRETEiJ_G0034488) #11	Cox7b (MGP_SPRETEiJ_G0034489) #12	Atp7a (MGP_SPRETEiJ_G0034490) #13	Tlr13 (MGP_SPRETEiJ_G0034491) #14	Pgk1 (MGP_SPRETEiJ_G0034492) #15	Taf9b (MGP_SPRETEiJ_G0034493) #16	Cysltr1 (MGP_SPRETEiJ_G0034495) #17	Gm5127 (MGP_SPRETEiJ_G0034496) #18	Rtl3 (MGP_SPRETEiJ_G0034497) #19	Lpar4 (MGP_SPRETEiJ_G0034498) #20	P2ry10 (MGP_SPRETEiJ_G0034499) #21	P2ry10b (MGP_SPRETEiJ_G0034500) #22	Gpr174 (MGP_SPRETEiJ_G0034501) #23	Itm2a (MGP_SPRETEiJ_G0034502) #24	Tbx22 (MGP_SPRETEiJ_G0034503) #25	Chmp1b2 (MGP_SPRETEiJ_G0034504) #26	Tent5d (MGP_SPRETEiJ_G0034505) #27	MGP_SPRETEiJ_G0034506 #28	MGP_SPRETEiJ_G0034507 #29	MGP_SPRETEiJ_G0034508 #30	MGP_SPRETEiJ_G0034509 #31	Sh3bgrl (MGP_SPRETEiJ_G0034510) #32	Gm6377 (MGP_SPRETEiJ_G0034511) #33	Pou3f4 (MGP_SPRETEiJ_G0034512) #34	Cylc1 (MGP_SPRETEiJ_G0034513) #35	MGP_SPRETEiJ_G0034514 #36	Rps6ka6 (MGP_SPRETEiJ_G0034515) #37
Steppe mouse	MODERN SPECIES	2165																P2ry10b (ENSMSIG00000020509) #22	Gpr174 (ENSMSIG00000020497) #23
Mouse	MODERN SPECIES	37	Fgf16 (ENSMUSG00000031230) #9	Atrx (ENSMUSG00000031229) #10	Magt1 (ENSMUSG00000031232) #11	Cox7b (ENSMUSG00000031231) #12	Atp7a (ENSMUSG00000033792) #13	Tlr13 (ENSMUSG00000033777) #14	Pgk1 (ENSMUSG00000062070) #15	Taf9b (ENSMUSG00000047242) #16	Fnd3c2 (ENSMUSG00000073012)	Fndc3c1 (ENSMUSG00000033737)	Cysltr1 (ENSMUSG00000052821) #17	Gm5127 (ENSMUSG00000073010) #18	Rtl3 (ENSMUSG00000047686) #19	Lpar4 (ENSMUSG00000049929) #20	P2ry10 (ENSMUSG00000050921) #21	P2ry10b (ENSMUSG00000054293) #22	Gpr174 (ENSMUSG00000073008) #23	Itm2a (ENSMUSG00000031239) #24	Tbx22 (ENSMUSG00000031241) #25	Chmp1b2 (ENSMUSG00000031242) #26	Tent5d (ENSMUSG00000073007) #27	Wmp (ENSMUSG00000073006) #28	Brwd3 (ENSMUSG00000063663) #30	Hmgn5 (ENSMUSG00000031245) #31	Sh3bgrl (ENSMUSG00000031246) #32	Gm6377 (ENSMUSG00000048621) #33	Pou3f4 (ENSMUSG00000056854) #34	Cylc1 (ENSMUSG00000073001) #35	Rps6ka6 (ENSMUSG00000025665) #37	Hdx (ENSMUSG00000034551)	Gm45194 (ENSMUSG00000109156)
Ryukyu mouse	MODERN SPECIES	19	Cypt2 (MGP_CAROLIEiJ_G0033321)	Fgf16 (MGP_CAROLIEiJ_G0033322) #9	Atrx (MGP_CAROLIEiJ_G0033323) #10	Magt1 (MGP_CAROLIEiJ_G0033324) #11	Cox7b (MGP_CAROLIEiJ_G0033325) #12	Atp7a (MGP_CAROLIEiJ_G0033326) #13	MGP_CAROLIEiJ_G0033327 #14	MGP_CAROLIEiJ_G0033328 #15	Taf9b (MGP_CAROLIEiJ_G0033329) #16	Fndc3c1 (MGP_CAROLIEiJ_G0033330)	Cysltr1 (MGP_CAROLIEiJ_G0033331) #17	Gm5127 (MGP_CAROLIEiJ_G0033332) #18	Rtl3 (MGP_CAROLIEiJ_G0033333) #19	Lpar4 (MGP_CAROLIEiJ_G0033334) #20	P2ry10 (MGP_CAROLIEiJ_G0033335) #21	P2ry10b (MGP_CAROLIEiJ_G0033336) #22	Gpr174 (MGP_CAROLIEiJ_G0033337) #23	Itm2a (MGP_CAROLIEiJ_G0033338) #24	Tbx22 (MGP_CAROLIEiJ_G0033339) #25	Chmp1b2 (MGP_CAROLIEiJ_G0033340) #26	Tent5d (MGP_CAROLIEiJ_G0033341) #27	Wmp (MGP_CAROLIEiJ_G0033342) #28	MGP_CAROLIEiJ_G0033343 #29	Brwd3 (MGP_CAROLIEiJ_G0033344) #30	MGP_CAROLIEiJ_G0033345 #31	Sh3bgrl (MGP_CAROLIEiJ_G0033346) #32	Gm6377 (MGP_CAROLIEiJ_G0033347) #33	Pou3f4 (MGP_CAROLIEiJ_G0033348) #34	Cylc1 (MGP_CAROLIEiJ_G0033349) #35	Rps6ka6 (MGP_CAROLIEiJ_G0033350) #37	Hdx (MGP_CAROLIEiJ_G0033351)
Shrew mouse	MODERN SPECIES	23	Magee1 (MGP_PahariEiJ_G0031857) #8	Fgf16 (MGP_PahariEiJ_G0031858) #9	Atrx (MGP_PahariEiJ_G0031859) #10	Magt1 (MGP_PahariEiJ_G0031860) #11	Cox7b (MGP_PahariEiJ_G0031861) #12	Atp7a (MGP_PahariEiJ_G0031862) #13	MGP_PahariEiJ_G0031863 #14	MGP_PahariEiJ_G0031864 #15	Taf9b (MGP_PahariEiJ_G0031865) #16	Fndc3c1 (MGP_PahariEiJ_G0031866)	Cysltr1 (MGP_PahariEiJ_G0031867) #17	Gm5127 (MGP_PahariEiJ_G0031868) #18	Rtl3 (MGP_PahariEiJ_G0031869) #19	Lpar4 (MGP_PahariEiJ_G0031870) #20	P2ry10 (MGP_PahariEiJ_G0031871) #21	P2ry10b (MGP_PahariEiJ_G0031872) #22	Gpr174 (MGP_PahariEiJ_G0031873) #23	Itm2a (MGP_PahariEiJ_G0031874) #24	Tbx22 (MGP_PahariEiJ_G0031875) #25	Chmp1b2 (MGP_PahariEiJ_G0031876) #26	Tent5d (MGP_PahariEiJ_G0031877) #27	Wmp (MGP_PahariEiJ_G0031878) #28	MGP_PahariEiJ_G0031879 #29	Brwd3 (MGP_PahariEiJ_G0031880) #30	Hmgn5 (MGP_PahariEiJ_G0031881) #31	Sh3bgrl (MGP_PahariEiJ_G0031882) #32	Gm6377 (MGP_PahariEiJ_G0031883) #33	MGP_PahariEiJ_G0031884	MGP_PahariEiJ_G0031886	MGP_PahariEiJ_G0031885	MGP_PahariEiJ_G0031887
Rat	MODERN SPECIES	46	ENSRNOG00000055485	Atp7a (ENSRNOG00000061367) #13	Tlr13 (ENSRNOG00000061403)	Pgk1 (ENSRNOG00000058249) #15	Taf9b (ENSRNOG00000061102) #16	LOC100359505 (ENSRNOG00000032807)	ENSRNOG00000069323	LOC120099223 (ENSRNOG00000068306)	Fndc3c1 (ENSRNOG00000002451)	Cysltr1 (ENSRNOG00000037845) #17	LOC100359656 (ENSRNOG00000029090) #18	RGD1560821 (ENSRNOG00000023733)	Rtl3 (ENSRNOG00000002429) #19	Lpar4 (ENSRNOG00000002428) #20	P2ry10 (ENSRNOG00000037839) #21	P2ry10b (ENSRNOG00000037838) #22	Gpr174 (ENSRNOG00000032970) #23	Itm2a (ENSRNOG00000002365) #24	Tbx22 (ENSRNOG00000002346) #25	Chmp1b2 (ENSRNOG00000002323) #26	Tent5d (ENSRNOG00000023637) #27	RGD1561552 (ENSRNOG00000037827) #28	Rfk-ps1 (ENSRNOG00000066048)	RGD1562871 (ENSRNOG00000033458)	LOC103690878 (ENSRNOG00000031283) #29	Brwd3 (ENSRNOG00000002291) #30	Hmgn5 (ENSRNOG00000029078) #31	Sh3bgrl (ENSRNOG00000069303) #32	RGD1562039 (ENSRNOG00000030519)	LOC681325 (ENSRNOG00000023005) #33	LOC102554937 (ENSRNOG00000068802)
Cricetidae	ANCESTRAL SPECIES	8	ENSGT00940000163182 #8	ENSGT00940000160087 #9	ENSGT00940000155902 #10	ENSGT00390000012030.b.a #11	ENSGT00390000012178.g.b #12	ENSGT00940000159568 #13	ENSGT00940000163576	ENSGT00390000008820.e.b.t.a #15	ENSGT00940000161697 #16	ENSGT00940000163592	ENSGT01100000263536.B.c.b #17	ENSGT01050000245003 #18	ENSGT00940000163808 #19	ENSGT01040000240444.A.a.a.a.b #20	ENSGT01100000263536.A.a.a.b #21	ENSGT01100000263536.A.a.a.a #22	ENSGT01030000234518.D #23	ENSGT00950000183115.b.b #24	ENSGT00940000161206 #25	ENSGT00950000182832.D.b #26	ENSGT00940000162488 #27	ENSGT00950000182962.b.b.a #28	ENSGT01050000244948.d #29	ENSGT00950000183107.a.b.b #30	ENSGT00730000111570 #31	ENSGT00940000156017 #32	ENSGT00940000165353	ENSGT00390000011425.A #33	ENSGT00940000161429 #34	ENSGT00730000111075.b #35	ENSGT00940000159242 #37
Cricetinae	ANCESTRAL SPECIES	17	ENSGT00940000163182 #8	ENSGT00940000160087 #9	ENSGT00940000155902 #10	ENSGT00390000012030.b.a #11	ENSGT00390000012178.g.b #12	ENSGT00940000159568 #13	ENSGT00940000164586.b	ENSGT00390000008820.e.b.t.a.a #15	ENSGT00940000161697 #16	ENSGT00940000163592	ENSGT01100000263536.B.c.b #17	ENSGT01050000245003 #18	ENSGT00940000163808 #19	ENSGT01040000240444.A.a.a.a.b #20	ENSGT01100000263536.A.a.a.b #21	ENSGT01100000263536.A.a.a.a #22	ENSGT01030000234518.D #23	ENSGT00950000183115.b.b #24	ENSGT00940000161206 #25	ENSGT00950000182832.D.b #26	ENSGT00940000162488 #27	ENSGT00950000182962.b.b.a #28	ENSGT01050000244948.d #29	ENSGT00950000183107.a.b.b #30	ENSGT00730000111570 #31	ENSGT00940000156017 #32	ENSGT00940000161429 #34	ENSGT01030000235438	ENSGT00730000111075.b #35	ENSGT00940000159242 #37	ENSGT00390000008591
Golden Hamster	MODERN SPECIES	826		ENSMAUG00000019451	Fgf16 (ENSMAUG00000018532) #9	Atrx (ENSMAUG00000008243) #10	Magt1 (ENSMAUG00000013417) #11	Cox7b (ENSMAUG00000008542) #12	Atp7a (ENSMAUG00000020233) #13	ENSMAUG00000017499	Pgk1 (ENSMAUG00000014623) #15	ENSMAUG00000012589 #16	ENSMAUG00000009059	Cysltr1 (ENSMAUG00000016351) #17	Rtl3 (ENSMAUG00000011823) #19	Lpar4 (ENSMAUG00000014705) #20	P2ry10 (ENSMAUG00000001792) #21	ENSMAUG00000001708 #22	Gpr174 (ENSMAUG00000002554) #23	Itm2a (ENSMAUG00000009143) #24	ENSMAUG00000004575	Tbx22 (ENSMAUG00000008767) #25
Chinese hamster chok1gshd	MODERN SPECIES	16	Magee1 (ENSCGRG00001014880) #8	Fgf16 (ENSCGRG00001020173) #9	Atrx (ENSCGRG00001010011) #10	Magt1 (ENSCGRG00001023814) #11	ENSCGRG00001021912 #12	Atp7a (ENSCGRG00001011757) #13	ENSCGRG00001022224	PGK1 (ENSCGRG00001005933) #15	Taf9b (ENSCGRG00001017738) #16	ENSCGRG00001002344	Cysltr1 (ENSCGRG00001010323) #17	Gm5127 (ENSCGRG00001007445) #18	Rtl3 (ENSCGRG00001015952) #19	Lpar4 (ENSCGRG00001006727) #20	P2ry10 (ENSCGRG00001007928) #21	P2ry10b (ENSCGRG00001011228) #22	Gpr174 (ENSCGRG00001015402) #23	Itm2a (ENSCGRG00001008417) #24	ENSCGRG00001000247	Tbx22 (ENSCGRG00001019725) #25	Chmp1b2 (ENSCGRG00001005877) #26	Tent5d (ENSCGRG00001012351) #27	Wmp (ENSCGRG00001017986) #28	ENSCGRG00001004740 #29	Brwd3 (ENSCGRG00001016099) #30	Hmgn5 (ENSCGRG00001013973) #31	Sh3bgrl (ENSCGRG00001000603) #32	ENSCGRG00001011016	Gm6377 (ENSCGRG00001012169) #33	ENSCGRG00001024450	Pou3f4 (ENSCGRG00001011962) #34
Cricetidae_B	ANCESTRAL SPECIES	47	ENSGT00390000016333 #7	ENSGT00940000163182 #8	ENSGT00940000160087 #9	ENSGT00940000155902 #10	ENSGT00390000012030.b.a #11	ENSGT00390000012178.g.b #12	ENSGT00940000159568 #13	ENSGT00940000163576	ENSGT00390000008820.e.b.t.a #15	ENSGT00940000161697 #16	ENSGT00940000163592	ENSGT01100000263536.B.c.b #17	ENSGT00940000163808 #19	ENSGT01040000240444.A.a.a.a.b #20	ENSGT01100000263536.A.a.a.b #21	ENSGT01100000263536.A.a.a.a #22	ENSGT01030000234518.D #23	ENSGT00950000183115.b.b #24	ENSGT00940000161206 #25	ENSGT00950000182832.D.b #26	ENSGT00940000162488 #27	ENSGT00950000182962.b.b.a #28	ENSGT01050000244948.d #29	ENSGT00950000183107.a.b.b #30	ENSGT00730000111570 #31	ENSGT00940000156017 #32	ENSGT00940000165353	ENSGT00390000011425.A #33	ENSGT00940000161429 #34	ENSGT00730000111075.b #35	ENSGT00940000159242 #37
Prairie vole	MODERN SPECIES	148	ENSMOCG00000000200 #10	ENSMOCG00000016097	ENSMOCG00000015369	Magt1 (ENSMOCG00000005129) #11	Cox7b (ENSMOCG00000000328) #12	Atp7a (ENSMOCG00000002028) #13	ENSMOCG00000010730	ENSMOCG00000000983 #15	ENSMOCG00000017397 #16	ENSMOCG00000015345	ENSMOCG00000011961	Cysltr1 (ENSMOCG00000001518) #17	Rtl3 (ENSMOCG00000017247) #19	Lpar4 (ENSMOCG00000015702) #20	P2ry10 (ENSMOCG00000014359) #21	P2ry10b (ENSMOCG00000012027) #22
Northern American deer mouse	MODERN SPECIES	475	ENSPEMG00000030156	ENSPEMG00000030780 #8	Fgf16 (ENSPEMG00000021916) #9	Atrx (ENSPEMG00000022358) #10	ENSPEMG00000016457	Magt1 (ENSPEMG00000021915) #11	ENSPEMG00000012083 #12	Atp7a (ENSPEMG00000006787) #13	ENSPEMG00000012872	Taf9b (ENSPEMG00000022582) #16	ENSPEMG00000021468	ENSPEMG00000026887	Cysltr1 (ENSPEMG00000023120) #17	Lpar4 (ENSPEMG00000030102) #20	P2ry10 (ENSPEMG00000023462) #21	P2ry10b (ENSPEMG00000024642) #22	ENSPEMG00000004229	Gpr174 (ENSPEMG00000005742) #23	Itm2a (ENSPEMG00000023946) #24	Tbx22 (ENSPEMG00000023383) #25	Chmp1b2 (ENSPEMG00000022335) #26	Tent5d (ENSPEMG00000031184) #27	Wmp (ENSPEMG00000027638) #28	ENSPEMG00000031328 #29	Brwd3 (ENSPEMG00000022305) #30	Sh3bgrl (ENSPEMG00000027781) #32	ENSPEMG00000024318	Gm6377 (ENSPEMG00000023246) #33	ENSPEMG00000025843	Pou3f4 (ENSPEMG00000003663) #34	Cylc1 (ENSPEMG00000017301) #35
Upper Galilee mountains blind mole rat	MODERN SPECIES	1001	Atrx (ENSNGAG00000023904) #10	Magt1 (ENSNGAG00000022711) #11	ENSNGAG00000012256 #12	ENSNGAG00000023001	ENSNGAG00000014750	Atp7a (ENSNGAG00000012201) #13	ENSNGAG00000012711	ENSNGAG00000011781 #15	ENSNGAG00000007200 #16	ENSNGAG00000007438	ENSNGAG00000022530	Cysltr1 (ENSNGAG00000010412) #17	Rtl3 (ENSNGAG00000002851) #19	Lpar4 (ENSNGAG00000024167) #20	P2ry10 (ENSNGAG00000011583) #21	ENSNGAG00000020015 #22	Gpr174 (ENSNGAG00000012600) #23	Itm2a (ENSNGAG00000024161) #24
Kangaroo rat	MODERN SPECIES	435	Uprt (ENSDORG00000015956)	Zdhhc15 (ENSDORG00000028824)	Magee1 (ENSDORG00000026617) #8	Fgf16 (ENSDORG00000028103) #9	Atrx (ENSDORG00000027540) #10	Magt1 (ENSDORG00000027252) #11	Cox7b (ENSDORG00000025171) #12	Atp7a (ENSDORG00000025464) #13	Pgk1 (ENSDORG00000025747) #15	ENSDORG00000029555 #16	Cysltr1 (ENSDORG00000025755) #17	Gm5127 (ENSDORG00000026330) #18	Rtl3 (ENSDORG00000029995) #19	Lpar4 (ENSDORG00000025204) #20	P2ry10 (ENSDORG00000004365) #21	P2ry10b (ENSDORG00000028974) #22	Gpr174 (ENSDORG00000011385) #23	Itm2a (ENSDORG00000003742) #24	Tbx22 (ENSDORG00000009980) #25	ENSDORG00000014964
Rodentia_A	ANCESTRAL SPECIES	9	ENSGT00940000163182 #8	ENSGT00940000160087 #9	ENSGT00940000155902 #10	ENSGT00390000012030.b.a #11	ENSGT00390000012178.g.b #12	ENSGT00940000159568 #13	ENSGT00940000163576	ENSGT00390000008820.e.b #15	ENSGT00940000161697 #16	ENSGT00940000163592	ENSGT01100000263536.B.c.b #17	ENSGT01050000245003 #18	ENSGT00940000163808 #19	ENSGT01040000240444.A.a.a.a.b #20	ENSGT01100000263536.A.a.a.b #21	ENSGT01100000263536.A.a.a.a #22	ENSGT01030000234518.D #23	ENSGT00950000183115.b.b #24	ENSGT00940000161206 #25	ENSGT00950000182832.D.b #26	ENSGT00940000162488 #27	ENSGT00950000183107.a.b.b #30	ENSGT00730000111570 #31	ENSGT00940000156017 #32	ENSGT00940000165353	ENSGT00390000011425.A #33	ENSGT00940000164351	ENSGT00940000161429 #34	ENSGT00730000111075.b #35	ENSGT00940000159242 #37	ENSGT00390000008591
Sciuridae	ANCESTRAL SPECIES	35	ENSGT00390000015009.h	ENSGT00940000160087 #9	ENSGT00940000155902 #10	ENSGT00390000012030.b.a #11	ENSGT00390000012178.g.b #12	ENSGT00940000159568 #13	ENSGT00940000163576	ENSGT00390000008820.e.b #15	ENSGT00940000161697 #16	ENSGT00940000163592	ENSGT01100000263536.B.c.b #17	ENSGT01050000245003 #18	ENSGT00940000163808 #19	ENSGT01040000240444.A.a.a.a.b #20	ENSGT01100000263536.A.a.a.b #21	ENSGT01100000263536.A.a.a.a #22	ENSGT01030000234518.D #23	ENSGT00950000183115.b.b #24	ENSGT00940000161206 #25	ENSGT00950000182832.D.b #26	ENSGT00940000162488 #27	ENSGT00950000183107.a.b.b #30	ENSGT00730000111570 #31	ENSGT00940000156017 #32	ENSGT00940000165353	ENSGT00390000011425.A #33	ENSGT00940000164351	ENSGT00940000161429 #34	ENSGT00730000111075.b #35	ENSGT00940000159242 #37	ENSGT00390000008591
Marmotini	ANCESTRAL SPECIES	78								ENSGT00390000008820.e.b #15	ENSGT00940000161697 #16	ENSGT00940000163592	ENSGT01100000263536.B.c.b #17	ENSGT01050000245003 #18	ENSGT00940000163808 #19	ENSGT01040000240444.A.a.a.a.b #20	ENSGT01100000263536.A.a.a.b #21	ENSGT01100000263536.A.a.a.a #22	ENSGT01030000234518.D #23	ENSGT00950000183115.b.b #24	ENSGT00940000161206 #25	ENSGT00950000182832.D.b #26	ENSGT00940000162488 #27	ENSGT00950000183107.a.b.b #30	ENSGT00730000111570 #31	ENSGT00940000156017 #32	ENSGT00940000165353	ENSGT00390000011425.A #33	ENSGT00940000164351	ENSGT00940000161429 #34	ENSGT00730000111075.b #35	ENSGT00940000159242 #37	ENSGT00390000008591
Alpin marmot	MODERN SPECIES	78												ENSMMMG00000011576 #18	RTL3 (ENSMMMG00000011558) #19	LPAR4 (ENSMMMG00000011556) #20	P2RY10 (ENSMMMG00000011546) #21	ENSMMMG00000011538 #22	GPR174 (ENSMMMG00000011530) #23	ITM2A (ENSMMMG00000011491) #24	ENSMMMG00000011489	ENSMMMG00000011488	TBX22 (ENSMMMG00000011419) #25	ENSMMMG00000011394 #26	TENT5D (ENSMMMG00000011385) #27	ENSMMMG00000011351	ENSMMMG00000011334 #31	SH3BGRL (ENSMMMG00000011328) #32	ENSMMMG00000011323	ENSMMMG00000011315 #33	ENSMMMG00000011302	CYLC1 (ENSMMMG00000011257) #35	RPS6KA6 (ENSMMMG00000011222) #37
Marmotini_b	ANCESTRAL SPECIES	121							ENSGT00390000008820.e.b #15	ENSGT00940000161697 #16	ENSGT00940000163592	ENSGT00390000016617.j	ENSGT01100000263536.B.c.b #17	ENSGT01050000245003 #18	ENSGT00940000163808 #19	ENSGT01040000240444.A.a.a.a.b #20	ENSGT01100000263536.A.a.a.b #21	ENSGT01100000263536.A.a.a.a #22	ENSGT01030000234518.D #23	ENSGT00950000183115.b.b #24	ENSGT00940000161206 #25	ENSGT00940000166733	ENSGT00940000162488 #27	ENSGT00390000015930.e.b	ENSGT00950000183107.a.b.b #30	ENSGT00730000111570 #31	ENSGT00940000156017 #32	ENSGT00940000165353	ENSGT00390000011425.A #33	ENSGT00940000164351	ENSGT00940000161429 #34	ENSGT00940000159242 #37	ENSGT00390000008591
Arctic ground squirrel	MODERN SPECIES	452						ENSUPAG00010008171	PGK1 (ENSUPAG00010008138) #15	TAF9B (ENSUPAG00010008118) #16	ENSUPAG00010007988	ENSUPAG00010007966	CYSLTR1 (ENSUPAG00010007962) #17	ENSUPAG00010007949 #18	RTL3 (ENSUPAG00010007942) #19	LPAR4 (ENSUPAG00010007932) #20	P2RY10 (ENSUPAG00010007928) #21	ENSUPAG00010007926 #22	GPR174 (ENSUPAG00010007918) #23	ITM2A (ENSUPAG00010007895) #24
Eurasian red squirrel	MODERN SPECIES	156	ENSSVLG00005012574	ENSSVLG00005012533	ATP7A (ENSSVLG00005012051) #13	ENSSVLG00005011999	ENSSVLG00005011883 #15	TAF9B (ENSSVLG00005011826) #16	ENSSVLG00005011533	ENSSVLG00005011494	CYSLTR1 (ENSSVLG00005011474) #17	ENSSVLG00005011444	ENSSVLG00005011426 #18	RTL3 (ENSSVLG00005011379) #19	LPAR4 (ENSSVLG00005011359) #20	ENSSVLG00005011328	P2RY10 (ENSSVLG00005011313) #21	ENSSVLG00005011291 #22	GPR174 (ENSSVLG00005011269) #23	ITM2A (ENSSVLG00005011136) #24	TBX22 (ENSSVLG00005011035) #25	ENSSVLG00005010993	ENSSVLG00005010961	TENT5D (ENSSVLG00005010945) #27	ENSSVLG00005010912	BRWD3 (ENSSVLG00005010574) #30	ENSSVLG00005010444	SH3BGRL (ENSSVLG00005010419) #32	ENSSVLG00005010369	ENSSVLG00005010356 #33	ENSSVLG00005010323	ENSSVLG00005024677	POU3F4 (ENSSVLG00005024640) #34
Hystricomorpha	ANCESTRAL SPECIES	11	ENSGT00940000159746	ENSGT00940000156281	ENSGT01020000230412.D	ENSGT00940000158214	ENSGT00390000016333 #7	ENSGT00940000163182 #8	ENSGT00940000160087 #9	ENSGT00940000155902 #10	ENSGT00390000012030.b.a #11	ENSGT00390000012178.g.a.a ##12	ENSGT00940000159568 #13	ENSGT00390000008820.e.b #15	ENSGT00940000161697 #16	ENSGT01100000263536.B.c.b #17	ENSGT01100000263536.A.a.a.b #21	ENSGT01100000263536.A.a.a.a #22	ENSGT01030000234518.D #23	ENSGT00950000183115.b.b #24	ENSGT00940000161206 #25	ENSGT00950000182832.D.b #26	ENSGT00940000162488 #27	ENSGT00950000183107.a.b.b #30	ENSGT00940000156017 #32	ENSGT00390000011425.A #33	ENSGT00940000161429 #34	ENSGT00730000111075.b #35	ENSGT00940000159242 #37	ENSGT00390000008591	ENSGT00530000063666.a	ENSGT00520000059318	ENSGT00940000159611
Naked mole-rat female	MODERN SPECIES	31	GLA (ENSHGLG00000001617)	BTK (ENSHGLG00000000626)	ENSHGLG00000046185	TAF7L (ENSHGLG00000008998)	ENSHGLG00000045650	DRP2 (ENSHGLG00000002400)	ENSHGLG00000002339	TMEM35A (ENSHGLG00000001359)	ENSHGLG00000044261	ENSHGLG00000032087	XKRX (ENSHGLG00000001130)	NOX1 (ENSHGLG00000001560)	ENSHGLG00000000659	ENSHGLG00000034411	ENSHGLG00000001881 #21	P2RY10 (ENSHGLG00000001264) #22	ENSHGLG00000001279	ITM2A (ENSHGLG00000001163) #24	ENSHGLG00000001147	TBX22 (ENSHGLG00000001099) #25	ENSHGLG00000000868 #26	TENT5D (ENSHGLG00000020434) #27	ENSHGLG00000041421	BRWD3 (ENSHGLG00000002063) #30	ENSHGLG00000037295	ENSHGLG00000007722 #32	ENSHGLG00000007062	ENSHGLG00000020488	ENSHGLG00000020202	ENSHGLG00000005940	ENSHGLG00000050061
Hystricomorpha_a	ANCESTRAL SPECIES	51	ENSGT00940000159746	ENSGT00940000156281	ENSGT01020000230412.D	ENSGT00940000158214	ENSGT00390000016333 #7	ENSGT00940000163182 #8	ENSGT00940000160087 #9	ENSGT00940000155902 #10	ENSGT00390000012030.b.a #11	ENSGT00390000012178.g.a.a ##12	ENSGT00940000159568 #13	ENSGT00390000008820.e.b #15	ENSGT00940000161697 #16	ENSGT01100000263536.B.c.b #17	ENSGT01100000263536.A.a.a.b #21	ENSGT01100000263536.A.a.a.a #22	ENSGT01030000234518.D #23	ENSGT00950000183115.b.b #24	ENSGT00940000161206 #25	ENSGT00950000182832.D.b #26	ENSGT00950000183107.a.b.b #30	ENSGT00940000156017 #32	ENSGT00390000011425.A #33	ENSGT00940000161429 #34	ENSGT00730000111075.b #35	ENSGT00940000159242 #37	ENSGT00390000008591	ENSGT00530000063666.a	ENSGT00520000059318	ENSGT00940000159611	ENSGT00390000000141
Hystricomorpha_b	ANCESTRAL SPECIES	123						ENSGT00390000016333 #7	ENSGT00940000163182 #8	ENSGT00940000160087 #9	ENSGT00940000155902 #10	ENSGT00390000012030.b.a #11	ENSGT00390000012178.g.a.a ##12	ENSGT00940000159568 #13	ENSGT00390000008820.e.b.h #15	ENSGT00940000161697 #16	ENSGT01100000263536.A.a.a.b #21	ENSGT01100000263536.A.a.a.a #22	ENSGT01030000234518.D #23	ENSGT00950000183115.b.b #24
Long-tailed chinchilla	MODERN SPECIES	264							MAGEE1 (ENSCLAG00000017388) #8	FGF16 (ENSCLAG00000000096) #9	ATRX (ENSCLAG00000000229) #10	MAGT1 (ENSCLAG00000000546) #11	ENSCLAG00000000296 ##12	ATP7A (ENSCLAG00000000444) #13	ENSCLAG00000000146 #15	TAF9B (ENSCLAG00000000199) #16	P2RY10 (ENSCLAG00000000218) #21	ENSCLAG00000000222 #22	GPR174 (ENSCLAG00000000259) #23	ITM2A (ENSCLAG00000000574) #24
Lagomorpha	ANCESTRAL SPECIES	95			ENSGT00390000016333 #7	ENSGT00940000163182 #8	ENSGT00940000160087 #9	ENSGT00940000155902 #10	ENSGT00390000012030.b.a #11	ENSGT00390000012178.g.a.b.b ##12	ENSGT00940000159568 #13	ENSGT00940000163576	ENSGT00390000008820.e.b #15	ENSGT00940000161697 #16	ENSGT00940000163592	ENSGT01100000263536.B.c.b #17	ENSGT01100000263536.A.a.a.b #21	ENSGT01100000263536.A.a.a.a #22	ENSGT01030000234518.D #23	ENSGT00950000183115.b.b #24	ENSGT01050000244948.d #29	ENSGT00950000183107.a.b.b #30	ENSGT00730000111570 #31	ENSGT00940000156017 #32	ENSGT00940000165353	ENSGT00390000011425.A #33	ENSGT00940000164351	ENSGT00390000017581.a	ENSGT00940000161429 #34	ENSGT00730000111075.b #35	ENSGT00940000159242 #37	ENSGT00390000008591	ENSGT00530000067269
Rabbit	MODERN SPECIES	1401	ENSOCUG00000035239	FGF16 (ENSOCUG00000007576) #9	ATRX (ENSOCUG00000007579) #10	MAGT1 (ENSOCUG00000000203) #11	ENSOCUG00000039084	ENSOCUG00000036425 ##12	ATP7A (ENSOCUG00000014160) #13	ENSOCUG00000023649	ENSOCUG00000014726 #15	ENSOCUG00000014717 #16	ENSOCUG00000021293	CYSLTR1 (ENSOCUG00000016192) #17	ENSOCUG00000024148	RTL3 (ENSOCUG00000025689) #19	P2RY10 (ENSOCUG00000014507) #21	ENSOCUG00000024395 #22	GPR174 (ENSOCUG00000005049) #23	ITM2A (ENSOCUG00000008651) #24	ENSOCUG00000033641	TBX22 (ENSOCUG00000013685) #25	ENSOCUG00000024762	TENT5D (ENSOCUG00000001367) #27	ENSOCUG00000021400	ENSOCUG00000022541	ENSOCUG00000031557	ENSOCUG00000026656 #29	BRWD3 (ENSOCUG00000005170) #30	ENSOCUG00000038725	HMGN5 (ENSOCUG00000029345) #31	SH3BGRL (ENSOCUG00000014035) #32	ENSOCUG00000028103
Tree shrew	MODERN SPECIES	8796																ENSTBEG00000000619 #22
Primates	ANCESTRAL SPECIES	19	ENSGT00940000163182 #8	ENSGT00940000160087 #9	ENSGT00940000155902 #10	ENSGT00390000012030.b.a #11	ENSGT00390000012178.g.a.b.b ##12	ENSGT00940000159568 #13	ENSGT00940000163576	ENSGT00390000008820.e.b #15	ENSGT00940000161697 #16	ENSGT00940000163592	ENSGT01100000263536.B.c.b #17	ENSGT01050000245003 #18	ENSGT00940000163808 #19	ENSGT01040000240444.A.a.a.a.b #20	ENSGT01100000263536.A.a.a.b #21	ENSGT01100000263536.A.a.a.a #22	ENSGT01030000234518.D #23	ENSGT00950000183115.b.b #24	ENSGT00940000161206 #25	ENSGT00940000166733	ENSGT00940000162488 #27	ENSGT00950000183107.a.b.b #30	ENSGT00730000111570 #31	ENSGT00940000156017 #32	ENSGT00940000165353	ENSGT00390000011425.A #33	ENSGT00940000161429 #34	ENSGT00730000111075.b #35	ENSGT00940000159242 #37	ENSGT00390000008591	ENSGT00530000063666.a
Strepsirrhini	ANCESTRAL SPECIES	37	ENSGT00940000160087 #9	ENSGT00940000155902 #10	ENSGT00390000012030.b.a #11	ENSGT00390000012178.g.a.a ##12	ENSGT00390000012178.g.a.b.a ##12	ENSGT00940000159568 #13	ENSGT00940000163576	ENSGT00390000008820.e.b #15	ENSGT00940000161697 #16	ENSGT00940000163592	ENSGT01100000263536.B.c.b #17	ENSGT01050000245003 #18	ENSGT00940000163808 #19	ENSGT01040000240444.A.a.a.a.b #20	ENSGT01100000263536.A.a.a.b #21	ENSGT01100000263536.A.a.a.a #22	ENSGT01030000234518.D #23	ENSGT00950000183115.b.b #24	ENSGT00940000161206 #25	ENSGT00950000183107.a.b.b #30	ENSGT00940000171348	ENSGT00940000156017 #32	ENSGT00940000165353	ENSGT00390000011425.A #33	ENSGT00940000161429 #34	ENSGT00730000111075.b #35	ENSGT00940000159242 #37	ENSGT00390000008591	ENSGT00530000063666.a	ENSGT00950000183121.b.b.b.a	ENSGT00940000159611
Lemuriformes	ANCESTRAL SPECIES	49	ENSGT00940000158214	ENSGT00390000016333 #7	ENSGT00940000163182 #8	ENSGT00940000160087 #9	ENSGT00940000155902 #10	ENSGT00390000012030.b.a #11	ENSGT00390000012178.g.a.b.a.a ##12	ENSGT00940000159568 #13	ENSGT00940000163576	ENSGT00390000008820.e.b #15	ENSGT00940000161697 #16	ENSGT00940000163592	ENSGT00940000163808 #19	ENSGT01040000240444.A.a.a.a.b #20	ENSGT01100000263536.A.a.a.b #21	ENSGT01100000263536.A.a.a.a #22	ENSGT01030000234518.D #23	ENSGT00950000183115.b.b #24	ENSGT00940000161206 #25	ENSGT00950000183107.a.b.b #30	ENSGT00940000156017.t.b #32	ENSGT00940000171348	ENSGT00940000156017.u #32	ENSGT00940000165353	ENSGT00390000011425.A #33	ENSGT00940000161429 #34	ENSGT00730000111075.b #35	ENSGT00940000159242 #37	ENSGT00390000008591	ENSGT00530000063666.a	ENSGT00950000183121.b.b.b.a
Lemuriformes_a	ANCESTRAL SPECIES	152	ENSGT00940000158214	ENSGT00390000016333 #7	ENSGT00940000163182 #8	ENSGT00940000160087 #9	ENSGT00940000155902 #10	ENSGT00390000012030.b.a #11	ENSGT00390000012178.g.a.b.a.a ##12	ENSGT00940000159568 #13	ENSGT00940000163576	ENSGT00390000008820.e.b #15	ENSGT00940000161697 #16	ENSGT00940000163592	ENSGT00940000163808 #19	ENSGT01040000240444.A.a.a.a.b #20	ENSGT01100000263536.A.a.a.b #21	ENSGT01100000263536.A.a.a.a #22	ENSGT01030000234518.D #23	ENSGT00950000183115.b.b #24	ENSGT00940000161206 #25	ENSGT00950000183107.a.b.b #30	ENSGT00940000156017.t.b #32
Coquerels sifaka	MODERN SPECIES	971	UPRT (ENSPCOG00000027342)	ZDHHC15 (ENSPCOG00000015378)	PBDC1 (ENSPCOG00000015464) #7	ENSPCOG00000023864 #8	FGF16 (ENSPCOG00000004992) #9	ATRX (ENSPCOG00000019721) #10	ENSPCOG00000000509	MAGT1 (ENSPCOG00000016418) #11	ENSPCOG00000019240 ##12	ATP7A (ENSPCOG00000023408) #13	ENSPCOG00000018553	PGK1 (ENSPCOG00000027264) #15	TAF9B (ENSPCOG00000008362) #16	RTL3 (ENSPCOG00000016711) #19	LPAR4 (ENSPCOG00000010534) #20	ENSPCOG00000013558 #22	ITM2A (ENSPCOG00000015645) #24	TBX22 (ENSPCOG00000022867) #25	BRWD3 (ENSPCOG00000017411) #30	SH3BGRL (ENSPCOG00000014464) #32	ENSPCOG00000020173
Greater bamboo lemur	MODERN SPECIES	1211														LPAR4 (ENSPSMG00000019414) #20	P2RY10 (ENSPSMG00000019411) #21	ENSPSMG00000019407 #22	GPR174 (ENSPSMG00000019405) #23	ITM2A (ENSPSMG00000019395) #24
Laurasiatheria	ANCESTRAL SPECIES	16	ENSGT00390000016333 #7	ENSGT00940000160087 #9	ENSGT00940000155902 #10	ENSGT00390000012030.b.a #11	ENSGT00390000012178.g.b #12	ENSGT00940000159568 #13	ENSGT00940000163576	ENSGT00390000008820.e.b #15	ENSGT00940000161697 #16	ENSGT00940000163592	ENSGT01100000263536.B.c.b #17	ENSGT01050000245003 #18	ENSGT00940000163808 #19	ENSGT01040000240444.A.a.a.a.b #20	ENSGT01100000263536.A.a.a.b #21	ENSGT01100000263536.A.a.a.a #22	ENSGT01030000234518.D #23	ENSGT00950000183115.b.b #24	ENSGT00940000161206 #25	ENSGT00950000182832.D.b #26	ENSGT00940000162488 #27	ENSGT00950000183107.a.b.b #30	ENSGT00730000111570 #31	ENSGT00940000156017 #32	ENSGT00940000165353	ENSGT00390000011425.A #33	ENSGT00940000164351	ENSGT00390000017581.a	ENSGT00940000161429 #34	ENSGT00730000111075.b #35	ENSGT00940000159242 #37
Laurasiatheria_a	ANCESTRAL SPECIES	10	ENSGT00390000016333 #7	ENSGT00940000160087 #9	ENSGT00940000155902 #10	ENSGT00390000012030.b.a #11	ENSGT00390000012178.g.b.b #12	ENSGT00940000159568 #13	ENSGT00940000163576	ENSGT00390000008820.e.b #15	ENSGT00940000161697 #16	ENSGT00940000163592	ENSGT01100000263536.B.c.b #17	ENSGT01050000245003 #18	ENSGT00940000163808 #19	ENSGT01040000240444.A.a.a.a.b #20	ENSGT01100000263536.A.a.a.b #21	ENSGT01100000263536.A.a.a.a #22	ENSGT01030000234518.D #23	ENSGT00950000183115.b.b #24	ENSGT00940000161206 #25	ENSGT00950000182832.D.b #26	ENSGT00940000162488 #27	ENSGT00950000183107.a.b.b #30	ENSGT00730000111570 #31	ENSGT00940000156017 #32	ENSGT00940000165353	ENSGT00390000011425.A #33	ENSGT00940000164351	ENSGT00390000017581.a	ENSGT00940000161429 #34	ENSGT00730000111075.b #35	ENSGT00940000159242 #37
Artiodactyla	ANCESTRAL SPECIES	9	ENSGT00940000163487	ENSGT00390000016333 #7	ENSGT00940000160087 #9	ENSGT00940000155902 #10	ENSGT00390000012030.b.a #11	ENSGT00390000012178.g.b.b #12	ENSGT00940000159568 #13	ENSGT00940000163576	ENSGT00390000008820.e.b #15	ENSGT00940000161697 #16	ENSGT00940000163592	ENSGT01100000263536.B.c.b #17	ENSGT00940000163808 #19	ENSGT01040000240444.A.a.a.a.b #20	ENSGT01100000263536.A.a.a.b #21	ENSGT01100000263536.A.a.a.a #22	ENSGT01030000234518.D #23	ENSGT00950000183115.b.b #24	ENSGT00940000161206 #25	ENSGT00950000182832.D.b #26	ENSGT00940000162488 #27	ENSGT00950000183107.a.b.b #30	ENSGT00730000111570 #31	ENSGT00940000156017 #32	ENSGT00940000165353	ENSGT00390000011425.A #33	ENSGT00940000164351	ENSGT00940000161429 #34	ENSGT00730000111075.b #35	ENSGT00940000159242 #37	ENSGT00390000008591
Artiodactyla_a	ANCESTRAL SPECIES	9	ENSGT00940000158214	ENSGT00940000163487	ENSGT00390000016333 #7	ENSGT00940000160087 #9	ENSGT00940000155902 #10	ENSGT00390000012030.b.a #11	ENSGT00390000012178.g.b.b #12	ENSGT00940000159568 #13	ENSGT00390000008820.e.b #15	ENSGT00940000161697 #16	ENSGT00940000163592	ENSGT01100000263536.B.c.b #17	ENSGT00940000163808 #19	ENSGT01040000240444.A.a.a.a.b #20	ENSGT01100000263536.A.a.a.b #21	ENSGT01100000263536.A.a.a.a #22	ENSGT01030000234518.D #23	ENSGT00950000183115.b.b #24	ENSGT00940000161206 #25	ENSGT00950000182832.D.b #26	ENSGT00940000162488 #27	ENSGT00950000183107.a.b.b #30	ENSGT00730000111570 #31	ENSGT00940000156017 #32	ENSGT00940000165353	ENSGT00390000011425.A #33	ENSGT00940000164351	ENSGT00940000161429 #34	ENSGT00730000111075.b #35	ENSGT00940000159242 #37	ENSGT00390000008591
Artiodactyla_b	ANCESTRAL SPECIES	19	ENSGT01020000230412.D	ENSGT00940000158214	ENSGT00940000163487	ENSGT00390000016333 #7	ENSGT00940000160087 #9	ENSGT00940000155902 #10	ENSGT00390000012030.b.a #11	ENSGT00390000012178.g.b.b #12	ENSGT00940000159568 #13	ENSGT00390000008820.e.b #15	ENSGT00940000161697 #16	ENSGT00940000163592	ENSGT01100000263536.B.c.b #17	ENSGT01040000240444.A.a.a.a.b #20	ENSGT01100000263536.A.a.a.b #21	ENSGT01100000263536.A.a.a.a #22	ENSGT01030000234518.D #23	ENSGT00950000183115.b.b #24	ENSGT00940000161206 #25	ENSGT00950000182832.D.b #26	ENSGT00940000162488 #27	ENSGT00950000183107.a.b.b #30	ENSGT00730000111570 #31	ENSGT00940000156017 #32	ENSGT00940000165353	ENSGT00390000011425.A #33	ENSGT00940000164351	ENSGT00940000161429 #34	ENSGT00730000111075.b #35	ENSGT00940000159242 #37	ENSGT00390000008591
Cetacea	ANCESTRAL SPECIES	19	ENSGT00940000156281	ENSGT01020000230412.D	ENSGT00940000158214	ENSGT00940000163487	ENSGT00390000016333 #7	ENSGT00940000160087 #9	ENSGT00940000155902 #10	ENSGT00390000012030.b.a #11	ENSGT00390000012178.g.b.a.a #12	ENSGT00940000159568 #13	ENSGT00390000008820.e.b #15	ENSGT00940000161697 #16	ENSGT00940000163808 #19	ENSGT01040000240444.A.a.a.a.b #20	ENSGT01100000263536.A.a.a.b #21	ENSGT01100000263536.A.a.a.a #22	ENSGT01030000234518.D #23	ENSGT00950000183115.b.b #24	ENSGT00940000161206 #25	ENSGT00950000182832.D.b #26	ENSGT00940000162488 #27	ENSGT00950000183107.a.b.b #30	ENSGT00730000111570 #31	ENSGT00940000156017 #32	ENSGT00390000011425.A #33	ENSGT00940000164351	ENSGT00940000161429 #34	ENSGT00940000159242 #37	ENSGT00390000008591	ENSGT00530000063666.a.a.a	ENSGT00950000183121.b.b.b.a
Odontoceti	ANCESTRAL SPECIES	19	ENSGT00940000158214	ENSGT00940000163487	ENSGT00390000016333 #7	ENSGT00940000160087 #9	ENSGT00940000155902 #10	ENSGT00390000012030.b.a #11	ENSGT00390000012178.g.b.a.a #12	ENSGT00980000203089	ENSGT00940000159568 #13	ENSGT00940000164489	ENSGT00390000008820.e.b #15	ENSGT00940000161697 #16	ENSGT00940000163808 #19	ENSGT01040000240444.A.a.a.a.b #20	ENSGT01100000263536.A.a.a.b #21	ENSGT01100000263536.A.a.a.a #22	ENSGT01030000234518.D #23	ENSGT00950000183115.b.b #24	ENSGT00940000161206 #25	ENSGT00950000182832.D.b #26	ENSGT00940000162488 #27	ENSGT00950000183107.a.b.b #30	ENSGT00730000111570 #31	ENSGT00940000156017 #32	ENSGT00390000011425.A #33	ENSGT00940000164351	ENSGT00940000161429 #34	ENSGT00940000159242 #37	ENSGT00390000008591	ENSGT00530000063666.a.a.a	ENSGT00950000183121.b.b.b.a
Odontoceti_a	ANCESTRAL SPECIES	28	ENSGT00940000158214	ENSGT00940000163487	ENSGT00390000016333 #7	ENSGT00940000160087 #9	ENSGT00940000155902 #10	ENSGT00390000012030.b.a #11	ENSGT00390000012178.g.b.a.a #12	ENSGT00980000203089	ENSGT00940000159568 #13	ENSGT00940000164489	ENSGT00390000008820.e.b #15	ENSGT00940000161697 #16	ENSGT00940000163808 #19	ENSGT01040000240444.A.a.a.a.b #20	ENSGT01100000263536.A.a.a.b #21	ENSGT01100000263536.A.a.a.a #22	ENSGT01030000234518.D #23	ENSGT00950000183115.b.b #24	ENSGT00940000161206 #25	ENSGT00950000182832.D.b #26	ENSGT00940000162488 #27	ENSGT00950000183107.a.b.b #30	ENSGT00940000156017 #32	ENSGT00390000011425.A #33	ENSGT00940000164351	ENSGT00940000161429 #34	ENSGT00940000159242 #37	ENSGT00390000005534.b.b.d	ENSGT00390000008591	ENSGT00530000063666.a.a.a	ENSGT00950000183121.b.b.b.a
Odontoceti_b	ANCESTRAL SPECIES	17	ENSGT00940000163487	ENSGT00390000016333 #7	ENSGT00940000160087 #9	ENSGT00940000155902 #10	ENSGT00390000012030.b.a #11	ENSGT00390000012178.g.b.a.a #12	ENSGT00980000203089	ENSGT00940000159568 #13	ENSGT01090000260912.A	ENSGT00940000164489	ENSGT00390000008820.e.b #15	ENSGT00940000161697 #16	ENSGT00940000163808 #19	ENSGT01040000240444.A.a.a.a.b #20	ENSGT01100000263536.A.a.a.b #21	ENSGT01100000263536.A.a.a.a #22	ENSGT01030000234518.D #23	ENSGT00950000183115.b.b #24	ENSGT00940000161206 #25	ENSGT00950000182832.D.b #26	ENSGT00940000162488 #27	ENSGT00950000183107.a.b.b #30	ENSGT00390000002517.a.a.c.b	ENSGT00940000156017 #32	ENSGT00390000011425.A #33	ENSGT00940000164351	ENSGT00940000161429 #34	ENSGT00940000159242 #37	ENSGT00390000005534.b.b.d	ENSGT00390000008591	ENSGT00530000063666.a.a.a
Monodontidae	ANCESTRAL SPECIES	19	ENSGT00940000158214	ENSGT00940000163487	ENSGT00390000016333 #7	ENSGT00940000160087 #9	ENSGT00940000155902 #10	ENSGT00390000012030.b.a #11	ENSGT00390000012178.g.b.a.a #12	ENSGT00940000159568 #13	ENSGT01090000260912.A	ENSGT00940000164489	ENSGT00390000008820.e.b #15	ENSGT00940000161697 #16	ENSGT00940000163808 #19	ENSGT01040000240444.A.a.a.a.b #20	ENSGT01100000263536.A.a.a.b #21	ENSGT01100000263536.A.a.a.a #22	ENSGT01030000234518.D #23	ENSGT00950000183115.b.b #24	ENSGT00940000161206 #25	ENSGT00950000182832.D.b #26	ENSGT00940000162488 #27	ENSGT00950000183107.a.b.b #30	ENSGT00940000156017 #32	ENSGT00390000011425.A #33	ENSGT00940000164351	ENSGT01010000229653	ENSGT00940000161429 #34	ENSGT00940000159242 #37	ENSGT00390000005534.b.b.d	ENSGT00390000008591	ENSGT00530000063666.a.a.a
Beluga whale	MODERN SPECIES	15	ENSDLEG00000002753	PBDC1 (ENSDLEG00000002743) #7	FGF16 (ENSDLEG00000002733) #9	ENSDLEG00000002727	ATRX (ENSDLEG00000002566) #10	MAGT1 (ENSDLEG00000002529) #11	ENSDLEG00000002519 #12	ATP7A (ENSDLEG00000002484) #13	ENSDLEG00000002475	ENSDLEG00000002472	PGK1 (ENSDLEG00000002462) #15	TAF9B (ENSDLEG00000002449) #16	RTL3 (ENSDLEG00000002439) #19	LPAR4 (ENSDLEG00000002433) #20	P2RY10 (ENSDLEG00000002430) #21	ENSDLEG00000002427 #22	GPR174 (ENSDLEG00000002420) #23	ITM2A (ENSDLEG00000002408) #24	TBX22 (ENSDLEG00000002390) #25	ENSDLEG00000002378 #26	FAM46D (ENSDLEG00000002371) #27	ENSDLEG00000002366	BRWD3 (ENSDLEG00000002333) #30	ENSDLEG00000002320	ENSDLEG00000002316	SH3BGRL (ENSDLEG00000002296) #32	ENSDLEG00000002284	ENSDLEG00000002271	POU3F4 (ENSDLEG00000002267) #34	ENSDLEG00000002260	RPS6KA6 (ENSDLEG00000000947) #37
Narwhal	MODERN SPECIES	309	MAGEE2 (ENSMMNG00015011964)	ENSMMNG00015011974	PBDC1 (ENSMMNG00015011993) #7	ENSMMNG00015012016	FGF16 (ENSMMNG00015009354) #9	ATRX (ENSMMNG00015009368) #10	MAGT1 (ENSMMNG00015009385) #11	ENSMMNG00015009397 #12	ATP7A (ENSMMNG00015009419) #13	ENSMMNG00015009432	PGK1 (ENSMMNG00015009442) #15	TAF9B (ENSMMNG00015009451) #16	RTL3 (ENSMMNG00015009461) #19	LPAR4 (ENSMMNG00015009468) #20	P2RY10 (ENSMMNG00015009475) #21	ENSMMNG00015009482 #22	ITM2A (ENSMMNG00015009496) #24	ENSMMNG00015009510	TBX22 (ENSMMNG00015009523) #25	ENSMMNG00015009536	TENT5D (ENSMMNG00015009540) #27	BRWD3 (ENSMMNG00015009554) #30	ENSMMNG00015009577	ENSMMNG00015009579	ENSMMNG00015009582	HMGN5 (ENSMMNG00015009591) #31	ENSMMNG00015009599	SH3BGRL (ENSMMNG00015009604) #32	ENSMMNG00015009610 #33	ENSMMNG00015009619	ENSMMNG00015009625
Vaquita	MODERN SPECIES	34	MAGEE2 (ENSPSNG00000021558)	PBDC1 (ENSPSNG00000021568) #7	FGF16 (ENSPSNG00000021608) #9	ATRX (ENSPSNG00000021664) #10	MAGT1 (ENSPSNG00000021746) #11	ENSPSNG00000021781 #12	ENSPSNG00000021803	ATP7A (ENSPSNG00000013495) #13	ENSPSNG00000013610	ENSPSNG00000013679	PGK1 (ENSPSNG00000013773) #15	TAF9B (ENSPSNG00000013833) #16	RTL3 (ENSPSNG00000013887) #19	LPAR4 (ENSPSNG00000013916) #20	P2RY10 (ENSPSNG00000013950) #21	ENSPSNG00000013978 #22	GPR174 (ENSPSNG00000014042) #23	ITM2A (ENSPSNG00000014072) #24	TBX22 (ENSPSNG00000014253) #25	TENT5D (ENSPSNG00000014369) #27	BRWD3 (ENSPSNG00000014395) #30	ENSPSNG00000014459	ENSPSNG00000014508	ENSPSNG00000014737	SH3BGRL (ENSPSNG00000014759) #32	ENSPSNG00000014813 #33	POU3F4 (ENSPSNG00000014834) #34	RPS6KA6 (ENSPSNG00000014893) #37	HDX (ENSPSNG00000015468)	APOOL (ENSPSNG00000015621)	ENSPSNG00000015676
Sperm whale	MODERN SPECIES	13	ENSPCTG00005015177	MAGEE2 (ENSPCTG00005015233)	PBDC1 (ENSPCTG00005015248) #7	ENSPCTG00005015275	FGF16 (ENSPCTG00005015353) #9	ATRX (ENSPCTG00005015436) #10	MAGT1 (ENSPCTG00005015692) #11	ENSPCTG00005015887 #12	ENSPCTG00005015993	ATP7A (ENSPCTG00005016014) #13	ENSPCTG00005016116	PGK1 (ENSPCTG00005016156) #15	TAF9B (ENSPCTG00005016200) #16	LPAR4 (ENSPCTG00005016476) #20	P2RY10 (ENSPCTG00005016500) #21	ENSPCTG00005016517 #22	GPR174 (ENSPCTG00005016529) #23	ITM2A (ENSPCTG00005016548) #24	TBX22 (ENSPCTG00005016705) #25	ENSPCTG00005016800 #26	ENSPCTG00005016832	TENT5D (ENSPCTG00005016891) #27	BRWD3 (ENSPCTG00005016926) #30	HMGN5 (ENSPCTG00005017184) #31	ENSPCTG00005017210	SH3BGRL (ENSPCTG00005017239) #32	ENSPCTG00005017278 #33	ENSPCTG00005017342	ENSPCTG00005017351	POU3F4 (ENSPCTG00005017365) #34	RPS6KA6 (ENSPCTG00005017401) #37
Camelidae	ANCESTRAL SPECIES	43	ENSGT01020000230412.D	ENSGT00940000158214	ENSGT00940000163487	ENSGT00390000016333 #7	ENSGT00940000160087 #9	ENSGT00940000155902 #10	ENSGT00390000012030.b.a #11	ENSGT00390000012178.g.b.b #12	ENSGT00940000159568 #13	ENSGT00390000008820.e.b #15	ENSGT00940000161697 #16	ENSGT01100000263536.B.c.b #17	ENSGT00940000163808 #19	ENSGT01040000240444.A.a.a.a.b #20	ENSGT01100000263536.A.a.a.b #21	ENSGT01100000263536.A.a.a.a #22	ENSGT01030000234518.D #23	ENSGT00950000183115.b.b #24	ENSGT00940000161206 #25	ENSGT00950000182832.D.b #26	ENSGT00940000162488 #27	ENSGT00950000183107.a.b.b #30	ENSGT00730000111570 #31	ENSGT00940000156017 #32	ENSGT00940000165353	ENSGT00390000011425.A #33	ENSGT00940000164351	ENSGT00940000161429 #34	ENSGT00730000111075.b #35	ENSGT00940000159242 #37	ENSGT00390000008591
Arabian camel	MODERN SPECIES	204	ZDHHC15 (ENSCDRG00005020979)	MAGEE2 (ENSCDRG00005020988)	PBDC1 (ENSCDRG00005020992) #7	FGF16 (ENSCDRG00005020998) #9	ATRX (ENSCDRG00005021010) #10	ENSCDRG00005021046	MAGT1 (ENSCDRG00005021053) #11	COX7B (ENSCDRG00005021062) #12	ATP7A (ENSCDRG00005021074) #13	PGK1 (ENSCDRG00005021108) #15	TAF9B (ENSCDRG00005021113) #16	CYSLTR1 (ENSCDRG00005021119) #17	RTL3 (ENSCDRG00005021121) #19	LPAR4 (ENSCDRG00005021124) #20	P2RY10 (ENSCDRG00005021126) #21	ENSCDRG00005021132 #22	GPR174 (ENSCDRG00005021134) #23	ITM2A (ENSCDRG00005021142) #24	TBX22 (ENSCDRG00005021148) #25	ENSCDRG00005021154 #26	TENT5D (ENSCDRG00005021162) #27	BRWD3 (ENSCDRG00005021171) #30	ENSCDRG00005021186 #31	SH3BGRL (ENSCDRG00005021189) #32	ENSCDRG00005021194	ENSCDRG00005021199 #33	ENSCDRG00005021204	POU3F4 (ENSCDRG00005021206) #34	CYLC1 (ENSCDRG00005021207) #35	RPS6KA6 (ENSCDRG00005021214) #37	ENSCDRG00005021222
Laurasiatheria_b	ANCESTRAL SPECIES	10	ENSGT00940000160087 #9	ENSGT00940000155902 #10	ENSGT00390000012030.b.a #11	ENSGT00390000012178.g.b.a.a #12	ENSGT00390000012178.g.b.a.b #12	ENSGT00940000159568 #13	ENSGT00940000163576	ENSGT00390000008820.e.b #15	ENSGT00940000161697 #16	ENSGT00940000163592	ENSGT01100000263536.B.c.b #17	ENSGT01050000245003 #18	ENSGT00940000163808 #19	ENSGT01040000240444.A.a.a.a.b #20	ENSGT01100000263536.A.a.a.b #21	ENSGT01100000263536.A.a.a.a #22	ENSGT01030000234518.D #23	ENSGT00950000183115.b.b #24	ENSGT00940000161206 #25	ENSGT00950000182832.D.b #26	ENSGT00940000162488 #27	ENSGT00950000183107.a.b.b #30	ENSGT00730000111570 #31	ENSGT00940000156017 #32	ENSGT00940000165353	ENSGT00390000011425.A #33	ENSGT00390000017581.a	ENSGT00940000161429 #34	ENSGT00730000111075.b #35	ENSGT00940000159242 #37	ENSGT00390000008591
Carnivora	ANCESTRAL SPECIES	11	ENSGT00940000163487	ENSGT00390000016333 #7	ENSGT00940000160087 #9	ENSGT00940000155902 #10	ENSGT00390000012030.b.a #11	ENSGT00390000012178.g.b.a.a #12	ENSGT00390000012178.g.b.a.b #12	ENSGT00940000159568 #13	ENSGT00390000008820.e.b #15	ENSGT00940000161697 #16	ENSGT00940000163592	ENSGT01100000263536.B.c.b #17	ENSGT01050000245003 #18	ENSGT01040000240444.A.a.a.a.b #20	ENSGT01100000263536.A.a.a.b #21	ENSGT01100000263536.A.a.a.a #22	ENSGT01030000234518.D #23	ENSGT00950000183115.b.b #24	ENSGT00940000161206 #25	ENSGT00950000182832.D.b #26	ENSGT00940000162488 #27	ENSGT00950000183107.a.b.b #30	ENSGT00730000111570 #31	ENSGT00940000156017 #32	ENSGT00940000165353	ENSGT00940000161429 #34	ENSGT00730000111075.b #35	ENSGT00940000159242 #37	ENSGT00390000008591	ENSGT00530000063666.a	ENSGT00950000183121.b.b.b.a
Caniformia	ANCESTRAL SPECIES																	ENSGT01100000263536.A.a.a.a #22
Caniformia_b	ANCESTRAL SPECIES																	ENSGT01100000263536.A.a.a.a #22
Ursidae	ANCESTRAL SPECIES	47	ENSGT01030000239825	ENSGT00940000163487	ENSGT00390000016333 #7	ENSGT00940000160087 #9	ENSGT00940000155902 #10	ENSGT00390000012030.b.a #11	ENSGT00390000012178.g.b.a.b.d.b.a #12	ENSGT00940000159568 #13	ENSGT00390000008820.e.b #15	ENSGT00940000161697 #16	ENSGT00940000163592	ENSGT01100000263536.B.c.b #17	ENSGT01050000245003 #18	ENSGT01040000240444.A.a.a.a.b #20	ENSGT01100000263536.A.a.a.b #21	ENSGT01100000263536.A.a.a.a #22	ENSGT01030000234518.D #23	ENSGT00950000183115.b.b.e.b #24	ENSGT00940000161206 #25	ENSGT00940000162488 #27	ENSGT00950000183107.a.b.b #30	ENSGT00730000111570 #31	ENSGT00940000156017 #32	ENSGT00940000165353	ENSGT00940000161429 #34	ENSGT00730000111075.b #35	ENSGT00940000159242 #37	ENSGT00390000008591	ENSGT00530000063666.a	ENSGT00950000183121.b.b.b.a	ENSGT00940000159611
Ursus	ANCESTRAL SPECIES	203																ENSGT01100000263536.A.a.a.a #22	ENSGT01030000234518.D #23	ENSGT00950000183115.b.b.e.b #24	ENSGT00940000161206 #25	ENSGT00940000162488 #27	ENSGT00950000183107.a.b.b #30	ENSGT00730000111570 #31	ENSGT00940000156017 #32	ENSGT00940000165353	ENSGT00940000161429 #34	ENSGT00730000111075.b #35	ENSGT00940000159242 #37	ENSGT00390000008591	ENSGT00530000063666.a	ENSGT00950000183121.b.b.b.a	ENSGT00940000159611
American black bear	MODERN SPECIES	8434																ENSUAMG00000005446 #22
Polar bear	MODERN SPECIES	224																ENSUMAG00000023610 #22	GPR174 (ENSUMAG00000023611) #23	ITM2A (ENSUMAG00000023612) #24	TBX22 (ENSUMAG00000023615) #25	ENSUMAG00000023617	TENT5D (ENSUMAG00000023620) #27	BRWD3 (ENSUMAG00000023646) #30	ENSUMAG00000023844 #31	SH3BGRL (ENSUMAG00000023846) #32	ENSUMAG00000023847	ENSUMAG00000023853	ENSUMAG00000023857	POU3F4 (ENSUMAG00000023858) #34	CYLC1 (ENSUMAG00000023861) #35	ENSUMAG00000023863 #37	HDX (ENSUMAG00000023864)
Felidae	ANCESTRAL SPECIES	12	ENSGT00940000156281	ENSGT01020000230412.D	ENSGT00940000158214	ENSGT00940000163487	ENSGT00390000016333 #7	ENSGT00940000160087 #9	ENSGT00940000155902 #10	ENSGT00390000012030.b.a #11	ENSGT00390000012178.g.b.a.a #12	ENSGT00940000159568 #13	ENSGT00940000161697 #16	ENSGT00940000163592	ENSGT01100000263536.B.c.b #17	ENSGT01040000240444.A.a.a.a.b #20	ENSGT01100000263536.A.a.a.b #21	ENSGT01100000263536.A.a.a.a #22	ENSGT01030000234518.D #23	ENSGT00950000183115.b.b #24	ENSGT00940000161206 #25	ENSGT00950000182832.D.b #26	ENSGT00940000162488 #27	ENSGT00950000183107.a.b.b #30	ENSGT00730000111570 #31	ENSGT00940000156017 #32	ENSGT00940000165353	ENSGT00940000161429 #34	ENSGT00730000111075.b #35	ENSGT00940000159242 #37	ENSGT00390000008591	ENSGT00530000063666.a.c	ENSGT00940000159611
Panthera	ANCESTRAL SPECIES	51												ENSGT00940000161697 #16	ENSGT01100000263536.B.c.b #17	ENSGT01040000240444.A.a.a.a.b #20	ENSGT01100000263536.A.a.a.b #21	ENSGT01100000263536.A.a.a.a #22	ENSGT00950000182832.D.b #26	ENSGT00940000162488 #27	ENSGT00950000183107.a.b.b #30	ENSGT00730000111570 #31	ENSGT00940000156017 #32	ENSGT00940000165353	ENSGT00940000161429 #34	ENSGT00730000111075.b #35	ENSGT00940000159242 #37	ENSGT00390000008591	ENSGT00950000182994.A.n.a.c	ENSGT00390000001134.b	ENSGT00940000159818	ENSGT00940000163848	ENSGT00940000162668
Panthera_a	ANCESTRAL SPECIES	59												ENSGT00940000161697 #16	ENSGT01100000263536.B.c.b #17	ENSGT01040000240444.A.a.a.a.b #20	ENSGT01100000263536.A.a.a.b #21	ENSGT01100000263536.A.a.a.a #22	ENSGT00950000182832.D.b #26	ENSGT00940000162488 #27	ENSGT00950000183107.a.b.b #30	ENSGT00730000111570 #31	ENSGT00940000156017 #32	ENSGT00940000165353	ENSGT00940000161429 #34	ENSGT00730000111075.b #35	ENSGT00940000159242 #37	ENSGT00390000008591	ENSGT00950000182994.A.n.a.c	ENSGT00390000001134.b	ENSGT00940000159818	ENSGT00940000163848	ENSGT00940000162668
lion	MODERN SPECIES	88	TAB3 (ENSPLOG00000020219)	ENSPLOG00000020178	ENSPLOG00000019098	ENSPLOG00000018811	ENSPLOG00000018761	ENSPLOG00000018687	TMEM47 (ENSPLOG00000018651)	ENSPLOG00000018607	MAGEB16 (ENSPLOG00000018561)	CFAP47 (ENSPLOG00000017913)	ENSPLOG00000017801 #15	TAF9B (ENSPLOG00000017774) #16	CYSLTR1 (ENSPLOG00000017757) #17	LPAR4 (ENSPLOG00000017742) #20	P2RY10 (ENSPLOG00000017725) #21	ENSPLOG00000017648 #22	TENT5D (ENSPLOG00000017623) #27	BRWD3 (ENSPLOG00000017318) #30	ENSPLOG00000017281 #31	SH3BGRL (ENSPLOG00000017246) #32	ENSPLOG00000017210	POU3F4 (ENSPLOG00000017183) #34	CYLC1 (ENSPLOG00000017131) #35	RPS6KA6 (ENSPLOG00000016820) #37	HDX (ENSPLOG00000016668)	ENSPLOG00000016617	ENSPLOG00000016565	DACH2 (ENSPLOG00000016162)	KLHL4 (ENSPLOG00000016046)	ENSPLOG00000016027	PABPC5 (ENSPLOG00000016010)
Laurasiatheria_c	ANCESTRAL SPECIES	10	ENSGT00940000160087 #9	ENSGT00940000155902 #10	ENSGT00980000202753	ENSGT00390000012030.b.a #11	ENSGT00390000012178.g.b.b #12	ENSGT00940000159568 #13	ENSGT00940000163576	ENSGT00390000008820.e.b #15	ENSGT00940000161697 #16	ENSGT00940000163592	ENSGT01100000263536.B.c.b #17	ENSGT01050000245003 #18	ENSGT00940000163808 #19	ENSGT01040000240444.A.a.a.a.b #20	ENSGT01100000263536.A.a.a.b #21	ENSGT01100000263536.A.a.a.a #22	ENSGT01030000234518.D #23	ENSGT00950000183115.b.b #24	ENSGT00940000161206 #25	ENSGT00950000182832.D.b #26	ENSGT00940000162488 #27	ENSGT00950000183107.a.b.b #30	ENSGT00730000111570 #31	ENSGT00940000156017 #32	ENSGT00940000165353	ENSGT00390000011425.A #33	ENSGT00390000017581.a	ENSGT00940000161429 #34	ENSGT00730000111075.b #35	ENSGT00940000159242 #37	ENSGT00390000008591
Equus	ANCESTRAL SPECIES	27	ENSGT00940000158214	ENSGT00940000163487	ENSGT00390000016333 #7	ENSGT00940000160087 #9	ENSGT00940000155902 #10	ENSGT00390000012030.b.a #11	ENSGT00390000012178.g.a.a ##12	ENSGT00940000159568 #13	ENSGT00390000008820.e.b #15	ENSGT00940000161697 #16	ENSGT00940000163592	ENSGT01100000263536.B.c.b #17	ENSGT00940000163808 #19	ENSGT01040000240444.A.a.a.a.b #20	ENSGT01100000263536.A.a.a.b #21	ENSGT01100000263536.A.a.a.a #22	ENSGT01030000234518.D #23	ENSGT00950000183115.b.b #24	ENSGT00940000161206 #25	ENSGT00950000182832.D.b #26	ENSGT00940000162488 #27	ENSGT00390000015252.z	ENSGT00950000183107.a.b.b #30	ENSGT00940000171348	ENSGT00940000156017 #32	ENSGT00940000165353	ENSGT00390000011425.A #33	ENSGT00390000017581.a	ENSGT00940000161429 #34	ENSGT00730000111075.b #35	ENSGT00940000159242 #37
Donkey	MODERN SPECIES	36	PBDC1 (ENSEASG00005025828) #7	ENSEASG00005003850	FGF16 (ENSEASG00005026344) #9	ATRX (ENSEASG00005018552) #10	ENSEASG00005038290	MAGT1 (ENSEASG00005007135) #11	ENSEASG00005026470 ##12	ATP7A (ENSEASG00005005867) #13	PGK1 (ENSEASG00005006468) #15	TAF9B (ENSEASG00005006471) #16	ENSEASG00005033851	CYSLTR1 (ENSEASG00005033616) #17	RTL3 (ENSEASG00005024251) #19	LPAR4 (ENSEASG00005032556) #20	P2RY10 (ENSEASG00005024071) #21	ENSEASG00005025689 #22	GPR174 (ENSEASG00005033902) #23	ITM2A (ENSEASG00005021993) #24	TBX22 (ENSEASG00005034364) #25	ENSEASG00005035394 #26	TENT5D (ENSEASG00005036140) #27	ENSEASG00005007773	BRWD3 (ENSEASG00005012247) #30	ENSEASG00005030462	SH3BGRL (ENSEASG00005032697) #32	ENSEASG00005010782	ENSEASG00005033419 #33	ENSEASG00005035953	POU3F4 (ENSEASG00005005148) #34	CYLC1 (ENSEASG00005017371) #35	RPS6KA6 (ENSEASG00005029386) #37
Horse	MODERN SPECIES	480	ENSECAG00000053954	ENSECAG00000055841	FGF16 (ENSECAG00000031442) #9	ATRX (ENSECAG00000016707) #10	ENSECAG00000001832	MAGT1 (ENSECAG00000008074) #11	ENSECAG00000033422 ##12	ATP7A (ENSECAG00000016767) #13	PGK1 (ENSECAG00000014984) #15	TAF9B (ENSECAG00000010189) #16	ENSECAG00000015462	CYSLTR1 (ENSECAG00000007107) #17	RTL3 (ENSECAG00000029496) #19	LPAR4 (ENSECAG00000041218) #20	P2RY10 (ENSECAG00000003181) #21	ENSECAG00000003466 #22	GPR174 (ENSECAG00000032528) #23	ITM2A (ENSECAG00000011335) #24	ENSECAG00000033730 #24	TBX22 (ENSECAG00000014426) #25	ENSECAG00000018625 #26	TENT5D (ENSECAG00000055387) #27	ENSECAG00000028456	BRWD3 (ENSECAG00000007187) #30	ENSECAG00000054141	ENSECAG00000033394	SH3BGRL (ENSECAG00000012612) #32	ENSECAG00000002165 #33	ENSECAG00000047832	ENSECAG00000038924	ENSECAG00000058100
Chiroptera	ANCESTRAL SPECIES	28		ENSGT00940000160087 #9	ENSGT00940000155902 #10	ENSGT00980000202753	ENSGT00390000012030.b.a #11	ENSGT00390000012178.g.b.b #12	ENSGT00940000159568 #13	ENSGT00940000163576	ENSGT00390000008820.e.b #15	ENSGT00940000161697 #16	ENSGT01100000263536.B.c.b #17	ENSGT01050000245003 #18	ENSGT00940000163808 #19	ENSGT01040000240444.A.a.a.a.b #20	ENSGT01100000263536.A.a.a.b #21	ENSGT01100000263536.A.a.a.a #22	ENSGT01030000234518.D #23	ENSGT00390000015224.c.a.a.b	ENSGT00950000183115.b.b #24	ENSGT00940000161206 #25	ENSGT00950000182832.D.b #26	ENSGT00940000162488 #27	ENSGT00950000183107.a.b.b #30	ENSGT00730000111570 #31	ENSGT00940000156017 #32	ENSGT00390000011425.A #33	ENSGT00940000161429 #34	ENSGT00730000111075.b #35	ENSGT00940000159242 #37	ENSGT00390000008591	ENSGT00530000067269
Microchiroptera	ANCESTRAL SPECIES	28		ENSGT00940000160087 #9	ENSGT00940000155902 #10	ENSGT00980000202753	ENSGT00390000012030.b.a #11	ENSGT00390000012178.g.b.b.c #12	ENSGT00940000159568 #13	ENSGT00940000163576	ENSGT00390000008820.e.b #15	ENSGT00940000161697 #16	ENSGT01100000263536.B.c.b #17	ENSGT01050000245003 #18	ENSGT00940000163808 #19	ENSGT01040000240444.A.a.a.a.b #20	ENSGT01100000263536.A.a.a.b #21	ENSGT01100000263536.A.a.a.a #22	ENSGT01030000234518.D #23	ENSGT00950000183115.b.b #24	ENSGT00940000161206 #25	ENSGT00950000182832.D.b #26	ENSGT00940000162488 #27	ENSGT00950000183107.a.b.b #30	ENSGT00730000111570 #31	ENSGT00940000156017 #32	ENSGT00390000011425.A #33	ENSGT00940000161429 #34	ENSGT00730000111075.b #35	ENSGT00940000159242 #37	ENSGT00390000008591	ENSGT00530000067269	ENSGT00530000063666.a
Microbat	MODERN SPECIES	941	ENSMLUG00000005846	ENSMLUG00000027225	FGF16 (ENSMLUG00000011190) #9	ENSMLUG00000027761 #10	ENSMLUG00000028355 #10	ENSMLUG00000027763	MAGT1 (ENSMLUG00000008595) #11	ENSMLUG00000022443 #12	ATP7A (ENSMLUG00000025990) #13	ENSMLUG00000026413	PGK1 (ENSMLUG00000017791) #15	TAF9B (ENSMLUG00000014581) #16	RTL3 (ENSMLUG00000002371) #19	LPAR4 (ENSMLUG00000006096) #20	P2RY10 (ENSMLUG00000010499) #21	ENSMLUG00000025815 #22	GPR174 (ENSMLUG00000005162) #23	ENSMLUG00000025668	ITM2A (ENSMLUG00000010431) #24	TBX22 (ENSMLUG00000016826) #25	ENSMLUG00000024811 #26	TENT5D (ENSMLUG00000000409) #27	BRWD3 (ENSMLUG00000005607) #30	ENSMLUG00000013978	ENSMLUG00000024815	HMGN5 (ENSMLUG00000029467) #31	SH3BGRL (ENSMLUG00000010051) #32	ENSMLUG00000025070 #33	ENSMLUG00000006065	POU3F4 (ENSMLUG00000004140) #34	ENSMLUG00000011590 #35
Atlantogenata	ANCESTRAL SPECIES	61	ENSGT00940000158214	ENSGT00940000163487	ENSGT00390000016333 #7	ENSGT00940000160087 #9	ENSGT00940000155902 #10	ENSGT00390000012030.b.a #11	ENSGT00390000012178.g #12	ENSGT00940000159568 #13	ENSGT00940000163576	ENSGT00390000008820.e.b #15	ENSGT00940000161697 #16	ENSGT01100000263536.B.c.b #17	ENSGT01040000240444.A.a.a.a.b #20	ENSGT01100000263536.A.a.a.b #21	ENSGT01030000234518.D #23	ENSGT01100000263536.A.a.a.a #22	ENSGT00950000183115.b.b #24	ENSGT00940000161206 #25	ENSGT00950000182832.D.b #26	ENSGT00940000162488 #27	ENSGT01000000215268	ENSGT00950000183107.a.b.b #30	ENSGT00730000111570 #31	ENSGT00940000156017 #32	ENSGT00390000017581.a	ENSGT00940000161429 #34	ENSGT01030000235438	ENSGT00940000159242 #37	ENSGT00390000008591
Afrotheria	ANCESTRAL SPECIES	71	ENSGT01020000230412.D	ENSGT00940000158214	ENSGT00940000163487	ENSGT00390000016333 #7	ENSGT00940000160087 #9	ENSGT00940000155902 #10	ENSGT00390000012030.b.a #11	ENSGT00390000012178.g #12	ENSGT00940000159568 #13	ENSGT00940000163576	ENSGT00390000008820.e.b #15	ENSGT00940000161697 #16	ENSGT01100000263536.B.c.b #17	ENSGT01040000240444.A.a.a.a.b #20	ENSGT01100000263536.A.a.a.b #21	ENSGT01100000263536.A.a.a.a #22	ENSGT00950000183115.b.b #24	ENSGT00940000161206 #25	ENSGT00950000182832.D.b #26	ENSGT00940000162488 #27	ENSGT01000000215268	ENSGT00950000183107.a.b.b #30	ENSGT00730000111570 #31	ENSGT00940000156017 #32	ENSGT00390000017581.a	ENSGT00940000161429 #34	ENSGT01030000235438	ENSGT00940000159242 #37	ENSGT00390000008591
Afrotheria_a	ANCESTRAL SPECIES	70	ENSGT01020000230412.D	ENSGT00940000158214	ENSGT00940000163487	ENSGT00390000016333 #7	ENSGT00940000160087 #9	ENSGT00940000155902 #10	ENSGT00390000012030.b.a #11	ENSGT00390000012178.g #12	ENSGT00940000159568 #13	ENSGT00940000163576	ENSGT00390000008820.e.b #15	ENSGT00940000161697 #16	ENSGT01100000263536.B.c.b #17	ENSGT01040000240444.A.a.a.a.b #20	ENSGT01100000263536.A.a.a.b #21	ENSGT01100000263536.A.a.a.a #22	ENSGT00950000183115.b.b #24	ENSGT00940000161206 #25	ENSGT00950000182832.D.b #26	ENSGT00940000162488 #27	ENSGT01000000215268	ENSGT00950000183107.a.b.b #30	ENSGT00730000111570 #31	ENSGT00940000156017 #32	ENSGT00390000017581.a	ENSGT00940000161429 #34	ENSGT01030000235438	ENSGT00940000159242 #37	ENSGT00390000008591
Elephant	MODERN SPECIES	251	ZDHHC15 (ENSLAFG00000008568)	MAGEE2 (ENSLAFG00000000647)	PBDC1 (ENSLAFG00000026665) #7	ENSLAFG00000030374	FGF16 (ENSLAFG00000010821) #9	ATRX (ENSLAFG00000020570) #10	MAGT1 (ENSLAFG00000012886) #11	COX7B (ENSLAFG00000022996) #12	ATP7A (ENSLAFG00000020866) #13	ENSLAFG00000025903	PGK1 (ENSLAFG00000011954) #15	TAF9B (ENSLAFG00000011956) #16	CYSLTR1 (ENSLAFG00000022602) #17	LPAR4 (ENSLAFG00000008857) #20	P2RY10 (ENSLAFG00000017615) #21	ENSLAFG00000025887 #22	ITM2A (ENSLAFG00000009973) #24	TBX22 (ENSLAFG00000001881) #25	ENSLAFG00000026457 #26	TENT5D (ENSLAFG00000027086) #27	ENSLAFG00000032363	BRWD3 (ENSLAFG00000002711) #30	ENSLAFG00000017956 #31	SH3BGRL (ENSLAFG00000011746) #32	ENSLAFG00000026530	POU3F4 (ENSLAFG00000015688) #34	ENSLAFG00000027489	RPS6KA6 (ENSLAFG00000007777) #37	HDX (ENSLAFG00000028655)	ENSLAFG00000031687	ENSLAFG00000032687
Tenrec	MODERN SPECIES	10386																ENSETEG00000020146 #22
Marsupialia	ANCESTRAL SPECIES	36	ENSGT01020000230412.D	ENSGT00940000158214.e	ENSGT00940000160087 #9	ENSGT00940000155902 #10	ENSGT00390000012030.b.a #11	ENSGT00390000012178 #12	ENSGT00940000159568 #13	ENSGT00950000183593 #14	ENSGT00390000008820.e.a ##15	ENSGT00940000155097.a	ENSGT00940000163592	ENSGT01100000263536.B.c.b #17	ENSGT01050000245003 #18	ENSGT01040000240444.A.a.a.a.b #20	ENSGT01100000263536.A.a.a.b #21	ENSGT01100000263536.A.a.a.a #22	ENSGT01100000263536.A.a.b ##22	ENSGT00950000183115.b.b #24	ENSGT00940000161206 #25	ENSGT00950000182832.D.b.uc #26	ENSGT00940000162488 #27	ENSGT00950000183107.a.b.b #30	ENSGT00940000156017 #32	ENSGT00390000011425.A #33	ENSGT00940000164351	ENSGT00390000017581.a	ENSGT00940000161429 #34	ENSGT00730000111075 #35	ENSGT00940000159242 #37	ENSGT00390000008591	ENSGT00940000164237
Marsupialia_b	ANCESTRAL SPECIES	32	ENSGT01020000230412.D	ENSGT00940000158214.e	ENSGT00940000160087 #9	ENSGT00940000155902.i #10	ENSGT00390000012030.b.a #11	ENSGT00390000012178 #12	ENSGT00940000159568 #13	ENSGT00940000163576	ENSGT00390000008820.e.a ##15	ENSGT00940000155097.a	ENSGT00940000163592	ENSGT01100000263536.B.c.b #17	ENSGT01050000245003 #18	ENSGT01040000240444.A.a.a.a.b #20	ENSGT01100000263536.A.a.a.b #21	ENSGT01100000263536.A.a.a.a #22	ENSGT01100000263536.A.a.b ##22	ENSGT00950000183115.b.b #24	ENSGT00940000161206 #25	ENSGT00950000182832.D.b.uc #26	ENSGT00940000162488 #27	ENSGT00950000183107.a.b.b #30	ENSGT00940000156017 #32	ENSGT00390000011425.A #33	ENSGT00940000164351	ENSGT00390000017581.a	ENSGT00940000161429 #34	ENSGT00730000111075 #35	ENSGT00940000159242 #37	ENSGT00390000008591	ENSGT00530000064086.q
Diprotodontia	ANCESTRAL SPECIES	72	ENSGT01020000230412.D	ENSGT00940000158214.e	ENSGT00940000160087 #9	ENSGT00940000155902.i #10	ENSGT00390000012030.b.a #11	ENSGT00390000012178 #12	ENSGT00940000159568 #13	ENSGT00940000163576	ENSGT00390000008820.e.a ##15	ENSGT00940000155097.a	ENSGT00940000163592	ENSGT01100000263536.B.c.b #17	ENSGT01050000245003 #18	ENSGT01040000240444.A.a.a.a.b #20	ENSGT01100000263536.A.a.a.b #21	ENSGT01100000263536.A.a.a.a #22	ENSGT01100000263536.A.a.b ##22	ENSGT00950000183115.b.b #24	ENSGT00940000161206 #25	ENSGT00950000182832.D.b.uc #26	ENSGT00940000162488 #27	ENSGT00950000183107.a.b.b #30	ENSGT00940000156017 #32	ENSGT00390000011425.A #33	ENSGT00940000164351	ENSGT00390000017581.a	ENSGT00940000161429 #34	ENSGT00940000159242 #37	ENSGT00390000008591	ENSGT00530000064086.q	ENSGT00940000164237
Diprotodontia_a	ANCESTRAL SPECIES	69	ENSGT01020000230412.D	ENSGT00940000158214.e	ENSGT00940000160087 #9	ENSGT00940000155902.i #10	ENSGT00390000012030.b.a #11	ENSGT00390000012178 #12	ENSGT00940000159568 #13	ENSGT00940000163576	ENSGT00390000008820.e.a.g ##15	ENSGT00940000155097.a	ENSGT00940000163592	ENSGT01100000263536.B.c.b #17	ENSGT01050000245003 #18	ENSGT01040000240444.A.a.a.a.b #20	ENSGT01100000263536.A.a.a.b #21	ENSGT01100000263536.A.a.a.a #22	ENSGT01100000263536.A.a.b ##22	ENSGT00950000183115.b.b #24	ENSGT00940000161206 #25	ENSGT00950000182832.D.b.uc #26	ENSGT00940000162488 #27	ENSGT00950000183107.a.b.b #30	ENSGT00940000156017 #32	ENSGT00390000011425.A #33	ENSGT00940000164351	ENSGT00390000017581.a	ENSGT00940000161429 #34	ENSGT00940000159242 #37	ENSGT00390000008591	ENSGT00530000064086.q	ENSGT00940000164237
koala	MODERN SPECIES	153	UPRT (ENSPCIG00000017115)	ZDHHC15 (ENSPCIG00000017111)	FGF16 (ENSPCIG00000017103) #9	ATRX (ENSPCIG00000017088) #10	MAGT1 (ENSPCIG00000026890) #11	ENSPCIG00000026893 #12	ATP7A (ENSPCIG00000026898) #13	ENSPCIG00000026914	ENSPCIG00000026908 ##15	ENSPCIG00000026916	ENSPCIG00000026996	CYSLTR1 (ENSPCIG00000028506) #17	ENSPCIG00000007698 #18	LPAR4 (ENSPCIG00000036415) #20	P2RY10 (ENSPCIG00000007695) #21	ENSPCIG00000007694 #22	ENSPCIG00000007693 ##22	ITM2A (ENSPCIG00000007691) #24	TBX22 (ENSPCIG00000007687) #25	ENSPCIG00000007686 #26	TENT5D (ENSPCIG00000007683) #27	BRWD3 (ENSPCIG00000021973) #30	SH3BGRL (ENSPCIG00000021959) #32	ENSPCIG00000021957	ENSPCIG00000034797	POU3F4 (ENSPCIG00000018483) #34	RPS6KA6 (ENSPCIG00000018480) #37	HDX (ENSPCIG00000018657)	ENSPCIG00000011754	ENSPCIG00000036766	ENSPCIG00000002457
Common wonbat	MODERN SPECIES	256	UPRT (ENSVURG00010005471)	ZDHHC15 (ENSVURG00010005482)	FGF16 (ENSVURG00010005505) #9	ATRX (ENSVURG00010005552) #10	ENSVURG00010005709	MAGT1 (ENSVURG00010005717) #11	ENSVURG00010005732 #12	ATP7A (ENSVURG00010005745) #13	ENSVURG00010005765 ##15	ENSVURG00010005813	ENSVURG00010006043	CYSLTR1 (ENSVURG00010010720) #17	ENSVURG00010010723 #18	LPAR4 (ENSVURG00010010729) #20	P2RY10 (ENSVURG00010010733) #21	ENSVURG00010010739 #22	ENSVURG00010010742 ##22	ITM2A (ENSVURG00010010753) #24	ENSVURG00010010796	TBX22 (ENSVURG00010010806) #25	ENSVURG00010010827 #26	TENT5D (ENSVURG00010010847) #27	ENSVURG00010010850	BRWD3 (ENSVURG00010010949) #30	ENSVURG00010012917	SH3BGRL (ENSVURG00010012931) #32	ENSVURG00010012935 #33	ENSVURG00010012938	ENSVURG00010012946	POU3F4 (ENSVURG00010012952) #34	RPS6KA6 (ENSVURG00010012986) #37
Tasmanian devil	MODERN SPECIES	21	UPRT (ENSSHAG00000029910)	ENSSHAG00000023346	ENSSHAG00000021047 #9	ENSSHAG00000011030 #10	MAGT1 (ENSSHAG00000012304) #11	ENSSHAG00000020548 #12	ENSSHAG00000012787 #13	ENSSHAG00000022184	ENSSHAG00000001853 ##15	ENSSHAG00000023354	ENSSHAG00000013267	CYSLTR1 (ENSSHAG00000013758) #17	ENSSHAG00000014281 #18	ENSSHAG00000026487 #20	P2RY10 (ENSSHAG00000028613) #21	ENSSHAG00000023574 #22	GPR174 (ENSSHAG00000020632) #23	ITM2A (ENSSHAG00000023986) #24	TBX22 (ENSSHAG00000031949) #25	ENSSHAG00000016903 #26	TENT5D (ENSSHAG00000030992) #27	BRWD3 (ENSSHAG00000017788) #30	ENSSHAG00000006740 #32	ENSSHAG00000026737 #33	ENSSHAG00000007416	ENSSHAG00000024526	POU3F4 (ENSSHAG00000028260) #34	ENSSHAG00000013212 #35	RPS6KA6 (ENSSHAG00000013276) #37	HDX (ENSSHAG00000014376)	ENSSHAG00000029424
Opossum	MODERN SPECIES	627	ZDHHC15 (ENSMODG00000003871)	ENSMODG00000043274	ENSMODG00000003877	FGF16 (ENSMODG00000003900) #9	ATRX (ENSMODG00000003920) #10	MAGT1 (ENSMODG00000003944) #11	ENSMODG00000003953 #12	ATP7A (ENSMODG00000004010) #13	ENSMODG00000028942 #14	ENSMODG00000004055 ##15	ENSMODG00000004077	ENSMODG00000004142	CYSLTR1 (ENSMODG00000004207) #17	ENSMODG00000045736 #18	LPAR4 (ENSMODG00000022866) #20	ENSMODG00000004214 #22	GPR174 (ENSMODG00000022863) #23	ENSMODG00000004233 #24	ENSMODG00000043149	ENSMODG00000043255	TBX22 (ENSMODG00000004255) #25	ENSMODG00000004273 #26	ENSMODG00000014584 #27	BRWD3 (ENSMODG00000004308) #30	SH3BGRL (ENSMODG00000004322) #32	ENSMODG00000022861	ENSMODG00000027595	ENSMODG00000017423	ENSMODG00000025192	ENSMODG00000017465	ENSMODG00000029644