Vertebrata	DUPLICATION
Vertebrata	ANCESTRAL SPECIES																	ENSGT00940000154790.a.a #22
Gnathostomata	DUPLICATION
Gnathostomata	ANCESTRAL SPECIES	78	ENSGT00390000002089.a	ENSGT00940000156484.b	ENSGT00940000156989	ENSGT00390000011724 #7	ENSGT00530000064210 #8	ENSGT01030000234620.a.b.b.b #9	ENSGT00390000017528 #10	ENSGT00940000162504 #11	ENSGT00940000156376 #12	ENSGT00390000001374 #14	ENSGT00720000108846.a #15	ENSGT01030000234625.B.c #17	ENSGT00390000012703.a #18	ENSGT00940000157391 #19	ENSGT00940000155656 #21	ENSGT00940000154790.a.a.b #22	ENSGT00940000157082 #23	ENSGT00940000156874 #24	ENSGT00730000111187.a.b ##25
Euteleostomi	ANCESTRAL SPECIES	5	ENSGT00390000011724 #7	ENSGT00530000064210 #8	ENSGT01030000234620.a.b.b.b #9	ENSGT00390000017528 #10	ENSGT00940000162504 #11	ENSGT00940000156376 #12	ENSGT00940000161120 #13	ENSGT00390000001374 #14	ENSGT00720000108846.a #15	ENSGT00720000108846.b ##15	ENSGT00390000018676	ENSGT01030000234625.B.c #17	ENSGT00390000012703.a #18	ENSGT00940000157391 #19	ENSGT00940000155656 #21	ENSGT00940000154790.a.a.b #22	ENSGT00940000157082 #23	ENSGT00940000156874 #24	ENSGT00730000111187.a.b ##25	ENSGT00940000156560 #26	ENSGT00940000153881.a #27	ENSGT00940000165654	ENSGT00940000158456 #28	ENSGT00940000153433.B.a.b #29	ENSGT00410000025698.a #30	ENSGT00390000011270 #31	ENSGT00390000001960 #32	ENSGT00940000157390 #33	ENSGT00940000159171 #35	ENSGT00940000159967 #36	ENSGT00940000179241
Sarcopterygii	ANCESTRAL SPECIES	20	ENSGT00390000011724 #7	ENSGT00530000064210 #8	ENSGT01030000234620.a.b.b.b #9	ENSGT00390000017528 #10	ENSGT00940000162504 #11	ENSGT00940000156376 #12	ENSGT00940000161120 #13	ENSGT00390000001374 #14	ENSGT00720000108846.a #15	ENSGT00720000108846.b ##15	ENSGT00390000018676	ENSGT01030000234625.B.c #17	ENSGT00390000012703.a #18	ENSGT00940000157391 #19	ENSGT00940000155656 #21	ENSGT00940000154790.a.a.b #22	ENSGT00940000157082 #23	ENSGT00940000156874 #24	ENSGT00730000111187.b #25	ENSGT00940000156560 #26	ENSGT00940000153881.a #27	ENSGT00940000165654	ENSGT00940000158456 #28	ENSGT00940000153433.B.a.b #29	ENSGT00410000025698.a #30	ENSGT00390000011270 #31	ENSGT00390000001960 #32	ENSGT00940000157390 #33	ENSGT00940000159171 #35	ENSGT00940000159967 #36	ENSGT00550000074815 #37
Tetrapoda	ANCESTRAL SPECIES	15	ENSGT00390000011724 #7	ENSGT00530000064210 #8	ENSGT01030000234620.a.b.b.b #9	ENSGT00390000017528 #10	ENSGT00940000162504 #11	ENSGT00940000156376 #12	ENSGT00940000161120 #13	ENSGT00390000001374 #14	ENSGT00720000108846.a #15	ENSGT00720000108846.b ##15	ENSGT00390000018676	ENSGT01030000234625.B.c #17	ENSGT00390000012703.a #18	ENSGT00940000157391 #19	ENSGT00940000155656 #21	ENSGT00940000154790.a.a.b #22	ENSGT00940000157082 #23	ENSGT00940000156874 #24	ENSGT00730000111187.b #25	ENSGT00730000111187.a.b ##25	ENSGT00940000156560 #26	ENSGT00940000153881.a #27	ENSGT00940000165654	ENSGT00940000158456 #28	ENSGT00940000153433.B.a.b #29	ENSGT00410000025698.a #30	ENSGT00390000011270 #31	ENSGT00390000001960 #32	ENSGT00940000157390 #33	ENSGT00940000159171 #35	ENSGT00940000159967 #36
Amniota	ANCESTRAL SPECIES	12	ENSGT00390000011724 #7	ENSGT00530000064210 #8	ENSGT01030000234620.a.b.b.b #9	ENSGT00390000017528 #10	ENSGT00940000162504 #11	ENSGT00940000156376 #12	ENSGT00940000161120 #13	ENSGT00390000001374 #14	ENSGT00720000108846.a #15	ENSGT00720000108846.b ##15	ENSGT00390000018676	ENSGT01030000234625.B.c #17	ENSGT00390000012703.a #18	ENSGT00940000157391 #19	ENSGT00940000155656 #21	ENSGT00940000154790.a.a.b #22	ENSGT00940000157082 #23	ENSGT00940000156874 #24	ENSGT00730000111187.b #25	ENSGT00940000156560 #26	ENSGT00940000153881.a #27	ENSGT00940000165654	ENSGT00940000158456 #28	ENSGT00940000153433.B.a.b #29	ENSGT00410000025698.a #30	ENSGT00940000174613	ENSGT00390000011270 #31	ENSGT00390000001960 #32	ENSGT00940000157390 #33	ENSGT00940000159171 #35	ENSGT00940000179241
Mammalia	ANCESTRAL SPECIES	2	ENSGT00390000011724 #7	ENSGT00530000064210 #8	ENSGT01030000234620.a.b.b.b #9	ENSGT00390000017528 #10	ENSGT00940000162504 #11	ENSGT00940000156376 #12	ENSGT00940000161120 #13	ENSGT00390000001374 #14	ENSGT00720000108846.a #15	ENSGT00960000188973	ENSGT00390000018676	ENSGT01030000234625.B.c #17	ENSGT00390000012703.a #18	ENSGT00940000157391 #19	ENSGT00940000155656 #21	ENSGT00940000154790.a.a.b #22	ENSGT00940000157082 #23	ENSGT00940000156874 #24	ENSGT00730000111187.b #25	ENSGT00940000156560 #26	ENSGT00940000153881.a #27	ENSGT00940000165654	ENSGT00940000158456 #28	ENSGT00940000153433.B.a.b #29	ENSGT00410000025698.a #30	ENSGT00940000174613	ENSGT00390000011270 #31	ENSGT00390000001960 #32	ENSGT00940000157390 #33	ENSGT00940000159171 #35	ENSGT00940000159967 #36
Theria	ANCESTRAL SPECIES	12	ENSGT00950000182836.b.a.b	ENSGT00390000011724 #7	ENSGT00530000064210 #8	ENSGT01030000234620.a.b.b.b #9	ENSGT00390000017528 #10	ENSGT00940000162504 #11	ENSGT00940000156376 #12	ENSGT00940000161120 #13	ENSGT00390000001374 #14	ENSGT00720000108846.a #15	ENSGT00390000018676	ENSGT01030000234625.B.c #17	ENSGT00390000012703.a #18	ENSGT00940000157391 #19	ENSGT00940000155656 #21	ENSGT00940000154790.a.a.b #22	ENSGT00940000157082 #23	ENSGT00940000156874 #24	ENSGT00730000111187.b #25	ENSGT00940000156560 #26	ENSGT00940000153881.a #27	ENSGT00940000165654	ENSGT00940000158456 #28	ENSGT00940000153433.B.a.b #29	ENSGT00410000025698.a #30	ENSGT00940000174613	ENSGT00390000011270 #31	ENSGT00390000001960 #32	ENSGT00940000157390 #33	ENSGT00940000159171 #35	ENSGT00940000159967 #36
Eutheria	ANCESTRAL SPECIES		ENSGT00390000011724 #7	ENSGT00530000064210 #8	ENSGT01030000234620.a.b.b.b #9	ENSGT00390000017528 #10	ENSGT00940000162504 #11	ENSGT00940000156376 #12	ENSGT00940000162770	ENSGT00940000161120 #13	ENSGT00390000001374 #14	ENSGT00720000108846.a #15	ENSGT00390000018676	ENSGT01030000234625.B.c #17	ENSGT00390000012703.a #18	ENSGT00940000157391 #19	ENSGT00940000155656 #21	ENSGT00940000154790.a.a.b #22	ENSGT00940000157082 #23	ENSGT00940000156874 #24	ENSGT00730000111187.b #25	ENSGT00940000156560 #26	ENSGT00940000153881.a #27	ENSGT00940000165654	ENSGT00940000158456 #28	ENSGT00940000153433.B.a.b #29	ENSGT00410000025698.a #30	ENSGT00940000174613	ENSGT00390000011270 #31	ENSGT00390000001960 #32	ENSGT00940000157390 #33	ENSGT00940000159171 #35	ENSGT00940000159967 #36
Boreoeutheria	ANCESTRAL SPECIES		ENSGT00390000011724 #7	ENSGT00530000064210 #8	ENSGT01030000234620.a.b.b.b #9	ENSGT00390000017528 #10	ENSGT00940000162504 #11	ENSGT00940000156376 #12	ENSGT00940000162770	ENSGT00940000161120 #13	ENSGT00390000001374 #14	ENSGT00720000108846.a #15	ENSGT00390000018676	ENSGT01030000234625.B.c #17	ENSGT00390000012703.a #18	ENSGT00940000157391 #19	ENSGT00940000155656 #21	ENSGT00940000154790.a.a.b #22	ENSGT00940000157082 #23	ENSGT00940000156874 #24	ENSGT00730000111187.b #25	ENSGT00940000156560 #26	ENSGT00940000153881.a #27	ENSGT00940000158456 #28	ENSGT00940000153433.B.a.b #29	ENSGT00410000025698.a #30	ENSGT00940000174613	ENSGT00390000011270 #31	ENSGT00390000001960 #32	ENSGT00940000157390 #33	ENSGT00940000159171 #35	ENSGT00940000159967 #36	ENSGT00900000143215
Euarchontoglires	ANCESTRAL SPECIES		ENSGT00390000011724 #7	ENSGT00530000064210 #8	ENSGT01030000234620.a.b.b.b #9	ENSGT00390000017528 #10	ENSGT00940000162504 #11	ENSGT00940000156376 #12	ENSGT00940000162770	ENSGT00940000161120 #13	ENSGT00390000001374 #14	ENSGT00720000108846.a #15	ENSGT00390000018676	ENSGT01030000234625.B.c #17	ENSGT00390000012703.a #18	ENSGT00940000157391 #19	ENSGT00940000155656 #21	ENSGT00940000154790.a.a.b #22	ENSGT00940000157082 #23	ENSGT00940000156874 #24	ENSGT00730000111187.b #25	ENSGT00940000156560 #26	ENSGT00940000153881.a #27	ENSGT00940000158456 #28	ENSGT00940000153433.B.a.b #29	ENSGT00410000025698.a #30	ENSGT00390000011270 #31	ENSGT00390000001960 #32	ENSGT00940000157390 #33	ENSGT00940000159171 #35	ENSGT00940000159967 #36	ENSGT00900000143215	ENSGT00550000074815 #37
Primates	ANCESTRAL SPECIES	7	ENSGT00390000011724 #7	ENSGT00530000064210 #8	ENSGT01030000234620.a.b.b.b #9	ENSGT00390000017528 #10	ENSGT00940000162504 #11	ENSGT00940000156376 #12	ENSGT00940000162770	ENSGT00940000161120 #13	ENSGT00390000001374 #14	ENSGT00720000108846.a #15	ENSGT00390000018676	ENSGT01030000234625.B.c #17	ENSGT00390000012703.a #18	ENSGT00940000157391 #19	ENSGT00940000155656 #21	ENSGT00940000154790.a.a.b #22	ENSGT00940000157082 #23	ENSGT00940000156874 #24	ENSGT00730000111187.b #25	ENSGT00940000156560 #26	ENSGT00940000153881.a #27	ENSGT00940000158456 #28	ENSGT00940000153433.B.a.b #29	ENSGT00410000025698.a #30	ENSGT00390000011270 #31	ENSGT00390000001960 #32	ENSGT00940000157390 #33	ENSGT00940000159171 #35	ENSGT00940000159967 #36	ENSGT00550000074815 #37	ENSGT00940000157359
Haplorrhini	ANCESTRAL SPECIES	7	ENSGT00390000011724 #7	ENSGT00530000064210 #8	ENSGT01030000234620.a.b.b.b #9	ENSGT00390000017528 #10	ENSGT00940000162504 #11	ENSGT00940000156376 #12	ENSGT00940000162770	ENSGT00940000161120 #13	ENSGT00390000001374 #14	ENSGT00720000108846.a #15	ENSGT00390000018676	ENSGT01030000234625.B.c #17	ENSGT00390000012703.a #18	ENSGT00940000157391 #19	ENSGT00940000155656 #21	ENSGT00940000154790.a.a.b #22	ENSGT00940000157082 #23	ENSGT00940000156874 #24	ENSGT00730000111187.b #25	ENSGT00940000156560 #26	ENSGT00940000153881.a #27	ENSGT00940000158456 #28	ENSGT00940000153433.B.a.b #29	ENSGT00410000025698.a #30	ENSGT00390000011270 #31	ENSGT00390000001960 #32	ENSGT00940000157390 #33	ENSGT00940000159171 #35	ENSGT00940000159967 #36	ENSGT00550000074815 #37	ENSGT00940000157359
Simiiformes	ANCESTRAL SPECIES	8	ENSGT00390000011724 #7	ENSGT00530000064210 #8	ENSGT01030000234620.a.b.b.b #9	ENSGT00390000017528 #10	ENSGT00940000162504 #11	ENSGT00940000156376 #12	ENSGT00940000162770	ENSGT00940000161120 #13	ENSGT00390000001374 #14	ENSGT00720000108846.a #15	ENSGT00390000018676	ENSGT01030000234625.B.c #17	ENSGT00390000012703.a #18	ENSGT00940000157391 #19	ENSGT00940000155656 #21	ENSGT00940000154790.a.a.b #22	ENSGT00940000157082 #23	ENSGT00940000156874 #24	ENSGT00730000111187.b #25	ENSGT00940000156560 #26	ENSGT00940000153881.a #27	ENSGT00940000158456 #28	ENSGT00940000153433.B.a.b #29	ENSGT00410000025698.a #30	ENSGT00390000011270 #31	ENSGT00390000001960 #32	ENSGT00940000157390 #33	ENSGT00940000159171 #35	ENSGT00940000159967 #36	ENSGT00550000074815 #37	ENSGT00940000157359
Platyrrhini	ANCESTRAL SPECIES	24	ENSGT00390000011724 #7	ENSGT00530000064210 #8	ENSGT01030000234620.a.b.b.b #9	ENSGT00390000017528 #10	ENSGT00940000162504 #11	ENSGT00940000156376 #12	ENSGT00940000162770	ENSGT00940000161120 #13	ENSGT00390000001374 #14	ENSGT00720000108846.a #15	ENSGT00390000018676	ENSGT01030000234625.B.c #17	ENSGT00390000012703.a #18	ENSGT00940000157391 #19	ENSGT00940000155656 #21	ENSGT00940000154790.a.a.b #22	ENSGT00940000157082 #23	ENSGT00940000156874 #24	ENSGT00730000111187.b #25	ENSGT00940000156560 #26	ENSGT00940000153881.a #27	ENSGT00940000158456 #28	ENSGT00940000153433.B.a.b #29	ENSGT00410000025698.a #30	ENSGT00390000011270 #31	ENSGT00390000001960.e.a #32	ENSGT00940000157390 #33	ENSGT00940000159171 #35	ENSGT00940000159967 #36	ENSGT00550000074815 #37	ENSGT00940000157359
Mas night monkey	MODERN SPECIES	958	INTS7 (ENSANAG00000036266) #7	DTL (ENSANAG00000034442) #8	PPP2R5A (ENSANAG00000030090) #9	PACC1 (ENSANAG00000035062) #10	NENF (ENSANAG00000028745) #11	ATF3 (ENSANAG00000037037) #12	BATF3 (ENSANAG00000036250) #13	NSL1 (ENSANAG00000034470) #14	TATDN3 (ENSANAG00000034556) #15	ENSANAG00000036696 #16	FLVCR1 (ENSANAG00000029598) #17	VASH2 (ENSANAG00000032216) #18	ANGEL2 (ENSANAG00000029357) #19	ENSANAG00000017378 #20	RPS6KC1 (ENSANAG00000036580) #21	PROX1 (ENSANAG00000028544) #22	SMYD2 (ENSANAG00000028402) #23	PTPN14 (ENSANAG00000024204) #24	CENPF (ENSANAG00000023683) #25	KCNK2 (ENSANAG00000027145) #26	KCTD3 (ENSANAG00000028292) #27	USH2A (ENSANAG00000024118) #28	ESRRG (ENSANAG00000021556) #29	GPATCH2 (ENSANAG00000032851) #30	SPATA17 (ENSANAG00000017809) #31	ENSANAG00000019880 #32	TGFB2 (ENSANAG00000032505) #33	ENSANAG00000024112 #34	LYPLAL1 (ENSANAG00000025763) #35	SLC30A10 (ENSANAG00000021852) #36	EPRS1 (ENSANAG00000022208) #37
Cebidae	ANCESTRAL SPECIES	23	ENSGT00390000011724 #7	ENSGT00530000064210 #8	ENSGT01030000234620.a.b.b.b #9	ENSGT00390000017528 #10	ENSGT00940000162504 #11	ENSGT00940000156376 #12	ENSGT00940000162770	ENSGT00940000161120 #13	ENSGT00390000001374 #14	ENSGT00720000108846.a #15	ENSGT00390000018676	ENSGT01030000234625.B.c #17	ENSGT00390000012703.a #18	ENSGT00940000157391 #19	ENSGT00940000155656 #21	ENSGT00940000154790.a.a.b #22	ENSGT00940000157082 #23	ENSGT00940000156874 #24	ENSGT00730000111187.b #25	ENSGT00940000156560 #26	ENSGT00940000153881.a #27	ENSGT00940000158456 #28	ENSGT00940000153433.B.a.b #29	ENSGT00410000025698.a #30	ENSGT00390000011270 #31	ENSGT00390000001960.e.a #32	ENSGT00940000157390 #33	ENSGT00940000159171 #35	ENSGT00940000159967 #36	ENSGT00550000074815 #37	ENSGT00940000157359
Cebidae_a	ANCESTRAL SPECIES	11	ENSGT00390000011724 #7	ENSGT00530000064210 #8	ENSGT01030000234620.a.b.b.b #9	ENSGT00390000017528 #10	ENSGT00940000162504 #11	ENSGT00940000156376 #12	ENSGT00940000162770	ENSGT00940000161120 #13	ENSGT00390000001374 #14	ENSGT00720000108846.a #15	ENSGT00390000018676	ENSGT01030000234625.B.c #17	ENSGT00390000012703.a #18	ENSGT00940000157391.a #19	ENSGT00940000155656 #21	ENSGT00940000154790.a.a.b #22	ENSGT00940000157082 #23	ENSGT00940000156874 #24	ENSGT00730000111187.b #25	ENSGT00940000156560 #26	ENSGT00940000153881.a #27	ENSGT00940000158456 #28	ENSGT00940000153433.B.a.b #29	ENSGT00410000025698.a #30	ENSGT00390000011270 #31	ENSGT00390000001960.e.a #32	ENSGT00940000157390 #33	ENSGT00940000159171 #35	ENSGT00940000159967 #36	ENSGT00550000074815 #37	ENSGT00940000157359
Bolivian squirrel monkey	MODERN SPECIES	79	INTS7 (ENSSBOG00000023687) #7	DTL (ENSSBOG00000020769) #8	PPP2R5A (ENSSBOG00000031243) #9	PACC1 (ENSSBOG00000022283) #10	ENSSBOG00000031457	ATF3 (ENSSBOG00000030879) #12	BATF3 (ENSSBOG00000028690) #13	NSL1 (ENSSBOG00000018022) #14	SPATA45 (ENSSBOG00000031495)	TATDN3 (ENSSBOG00000026391) #15	FLVCR1 (ENSSBOG00000034630) #17	VASH2 (ENSSBOG00000003716) #18	ANGEL2 (ENSSBOG00000023625) #19	ENSSBOG00000024418	RPS6KC1 (ENSSBOG00000018202) #21	PROX1 (ENSSBOG00000032750) #22	SMYD2 (ENSSBOG00000029207) #23	PTPN14 (ENSSBOG00000007166) #24	CENPF (ENSSBOG00000024619) #25	ENSSBOG00000027013	KCNK2 (ENSSBOG00000024888) #26	KCTD3 (ENSSBOG00000027335) #27	USH2A (ENSSBOG00000022136) #28	ESRRG (ENSSBOG00000029289) #29	GPATCH2 (ENSSBOG00000028891) #30	SPATA17 (ENSSBOG00000035908) #31	ENSSBOG00000020746	ENSSBOG00000011565 #32	TGFB2 (ENSSBOG00000031148) #33	LYPLAL1 (ENSSBOG00000022915) #35	SLC30A10 (ENSSBOG00000019263) #36
Capuchin	MODERN SPECIES	198	MTFR1 (ENSCCAG00000033890)	PDE7A (ENSCCAG00000028863)	DNAJC5B (ENSCCAG00000019515)	TRIM55 (ENSCCAG00000006396)	RRS1 (ENSCCAG00000032186)	ADHFE1 (ENSCCAG00000027712)	VXN (ENSCCAG00000015867)	MYBL1 (ENSCCAG00000026826)	VCPIP1 (ENSCCAG00000016170)	SPATA45 (ENSCCAG00000016193)	FLVCR1 (ENSCCAG00000037713) #17	ENSCCAG00000025928 #16	VASH2 (ENSCCAG00000035020) #18	ANGEL2 (ENSCCAG00000037910) #19	RPS6KC1 (ENSCCAG00000024101) #21	PROX1 (ENSCCAG00000035172) #22	ENSCCAG00000019884	SMYD2 (ENSCCAG00000029531) #23	PTPN14 (ENSCCAG00000023778) #24
Marmoset	MODERN SPECIES	10	SLC30A1 (ENSCJAG00000015892)	ENSCJAG00000082707	ENSCJAG00000015738	ENSCJAG00000087037	ATF3 (ENSCJAG00000047183) #12	BATF3 (ENSCJAG00000077626) #13	NSL1 (ENSCJAG00000015718) #14	TATDN3 (ENSCJAG00000015712) #15	SPATA45 (ENSCJAG00000015706)	FLVCR1 (ENSCJAG00000015690) #17	VASH2 (ENSCJAG00000042796) #18	ANGEL2 (ENSCJAG00000015618) #19	ENSCJAG00000080375	RPS6KC1 (ENSCJAG00000015526) #21	ENSCJAG00000075052	PROX1 (ENSCJAG00000015514) #22	ENSCJAG00000085826	ENSCJAG00000083995	ENSCJAG00000081067	SMYD2 (ENSCJAG00000015441) #23	PTPN14 (ENSCJAG00000015389) #24	ENSCJAG00000074620	KCNK2 (ENSCJAG00000015327) #26	KCTD3 (ENSCJAG00000046030) #27	ENSCJAG00000074427	ENSCJAG00000071156	USH2A (ENSCJAG00000015184) #28	ESRRG (ENSCJAG00000015141) #29	ENSCJAG00000038362	GPATCH2 (ENSCJAG00000047537) #30	ENSCJAG00000078398
Catarrhini	ANCESTRAL SPECIES	10	ENSGT00390000011724 #7	ENSGT00530000064210 #8	ENSGT01030000234620.a.b.b.b #9	ENSGT00390000017528 #10	ENSGT00940000162504 #11	ENSGT00940000156376 #12	ENSGT00940000162770	ENSGT00940000161120 #13	ENSGT00390000001374 #14	ENSGT00720000108846.a #15	ENSGT00390000018676	ENSGT01030000234625.B.c #17	ENSGT00390000012703.a #18	ENSGT00940000157391 #19	ENSGT00940000155656 #21	ENSGT00940000154790.a.a.b #22	ENSGT00940000157082 #23	ENSGT00940000156874 #24	ENSGT00730000111187.b #25	ENSGT00940000156560 #26	ENSGT00940000153881.a #27	ENSGT00940000158456 #28	ENSGT00940000153433.B.a.b #29	ENSGT00410000025698.a #30	ENSGT00390000011270 #31	ENSGT00390000001960 #32	ENSGT00940000157390 #33	ENSGT00940000159171 #35	ENSGT00940000159967 #36	ENSGT00550000074815 #37	ENSGT00940000157359
Hominoidea	ANCESTRAL SPECIES	7	ENSGT00390000011724 #7	ENSGT00530000064210 #8	ENSGT01030000234620.a.b.b.b #9	ENSGT00390000017528 #10	ENSGT00940000162504 #11	ENSGT00940000156376 #12	ENSGT00940000162770	ENSGT00940000161120 #13	ENSGT00390000001374 #14	ENSGT00720000108846.a #15	ENSGT00390000018676	ENSGT01030000234625.B.c #17	ENSGT00390000012703.a #18	ENSGT00940000157391 #19	ENSGT00940000155656 #21	ENSGT00940000154790.a.a.b #22	ENSGT00940000157082 #23	ENSGT00940000156874 #24	ENSGT00730000111187.b #25	ENSGT00940000156560 #26	ENSGT00940000153881.a #27	ENSGT00940000158456 #28	ENSGT00940000153433.B.a.b #29	ENSGT00410000025698.a #30	ENSGT00390000011270 #31	ENSGT00390000001960 #32	ENSGT00940000157390 #33	ENSGT00940000159171 #35	ENSGT00940000159967 #36	ENSGT00550000074815 #37	ENSGT00940000157359
Hominidae	ANCESTRAL SPECIES	6	ENSGT00390000011724 #7	ENSGT00530000064210 #8	ENSGT01030000234620.a.b.b.b #9	ENSGT00390000017528 #10	ENSGT00940000162504 #11	ENSGT00940000156376 #12	ENSGT00940000162770	ENSGT00940000161120 #13	ENSGT00390000001374 #14	ENSGT00720000108846.a #15	ENSGT00390000018676	ENSGT01030000234625.B.c #17	ENSGT00390000012703.a #18	ENSGT00940000157391 #19	ENSGT00940000155656 #21	ENSGT00940000154790.a.a.b #22	ENSGT00940000157082 #23	ENSGT00940000156874 #24	ENSGT00730000111187.b #25	ENSGT00940000156560 #26	ENSGT00940000153881.a #27	ENSGT00940000158456 #28	ENSGT00940000153433.B.a.b #29	ENSGT00410000025698.a #30	ENSGT00390000011270 #31	ENSGT00390000001960 #32	ENSGT00940000157390 #33	ENSGT00940000159171 #35	ENSGT00940000159967 #36	ENSGT00550000074815 #37	ENSGT00940000157359
Homo/Pan/Gorilla group	ANCESTRAL SPECIES	6	ENSGT00530000064210 #8	ENSGT00950000182901.a.a.b.a.a	ENSGT01030000234620.a.b.b.b #9	ENSGT00390000017528 #10	ENSGT00940000162504 #11	ENSGT00940000156376 #12	ENSGT00940000162770	ENSGT00940000161120 #13	ENSGT00390000001374 #14	ENSGT00720000108846.a #15	ENSGT00390000018676	ENSGT01030000234625.B.c #17	ENSGT00390000012703.a #18	ENSGT00940000157391 #19	ENSGT00940000155656 #21	ENSGT00940000154790.a.a.b #22	ENSGT00940000157082 #23	ENSGT00940000156874 #24	ENSGT00730000111187.b #25	ENSGT00940000156560 #26	ENSGT00940000153881.a #27	ENSGT00940000158456 #28	ENSGT00940000153433.B.a.b #29	ENSGT00410000025698.a #30	ENSGT00390000011270 #31	ENSGT00390000001960 #32	ENSGT00940000157390 #33	ENSGT00940000159171 #35	ENSGT01010000222851.c	ENSGT00920000149095.a.h	ENSGT00940000159967 #36
Homo/Pan group	ANCESTRAL SPECIES	7	ENSGT00530000064210 #8	ENSGT00950000182901.a.a.b.a.a	ENSGT01030000234620.a.b.b.b #9	ENSGT00390000017528 #10	ENSGT00940000162504 #11	ENSGT00940000156376 #12	ENSGT00940000162770	ENSGT00940000161120 #13	ENSGT00390000001374 #14	ENSGT00720000108846.a #15	ENSGT00390000018676	ENSGT01030000234625.B.c #17	ENSGT00390000012703.a #18	ENSGT00940000157391 #19	ENSGT00940000155656 #21	ENSGT00940000154790.a.a.b #22	ENSGT00940000157082 #23	ENSGT00940000156874 #24	ENSGT00730000111187.b #25	ENSGT00940000156560 #26	ENSGT00940000153881.a #27	ENSGT00940000158456 #28	ENSGT00940000153433.B.a.b #29	ENSGT00410000025698.a #30	ENSGT00390000011270 #31	ENSGT00390000001960 #32	ENSGT00940000157390 #33	ENSGT00940000159171 #35	ENSGT00920000149095.a.h	ENSGT00940000159967 #36	ENSGT00550000074815 #37
Pan	ANCESTRAL SPECIES		ENSGT00530000064210 #8	ENSGT00950000182901.a.a.b.a.a	ENSGT01030000234620.a.b.b.b #9	ENSGT00390000017528 #10	ENSGT00940000162504 #11	ENSGT00940000156376 #12	ENSGT00940000162770	ENSGT00940000161120 #13	ENSGT00390000001374 #14	ENSGT00720000108846.a #15	ENSGT00390000018676	ENSGT01030000234625.B.c #17	ENSGT00390000012703.a #18	ENSGT00940000157391 #19	ENSGT00940000155656 #21	ENSGT00940000154790.a.a.b #22	ENSGT00940000157082 #23	ENSGT00940000156874 #24	ENSGT00730000111187.b #25	ENSGT00940000156560 #26	ENSGT00910000147483	ENSGT00940000153881.a #27	ENSGT00940000158456 #28	ENSGT00940000153433.B.a.b #29	ENSGT00410000025698.a #30	ENSGT00390000011270 #31	ENSGT00390000001960 #32	ENSGT00940000157390 #33	ENSGT00940000159171 #35	ENSGT00940000159967 #36	ENSGT00550000074815 #37
Chimpanzee	MODERN SPECIES		DTL (ENSPTRG00000001956) #8	PPP2R5A (ENSPTRG00000001958) #9	ENSPTRG00000029329	PACC1 (ENSPTRG00000001960) #10	NENF (ENSPTRG00000001961) #11	ATF3 (ENSPTRG00000001962) #12	GARIN4 (ENSPTRG00000001964)	BATF3 (ENSPTRG00000001965) #13	NSL1 (ENSPTRG00000001966) #14	TATDN3 (ENSPTRG00000030168) #15	ENSPTRG00000001967	FLVCR1 (ENSPTRG00000001968) #17	VASH2 (ENSPTRG00000001969) #18	ANGEL2 (ENSPTRG00000001970) #19	RPS6KC1 (ENSPTRG00000001972) #21	PROX1 (ENSPTRG00000001974) #22	SMYD2 (ENSPTRG00000001975) #23	PTPN14 (ENSPTRG00000001976) #24	CENPF (ENSPTRG00000001977) #25	ENSPTRG00000042737	KCNK2 (ENSPTRG00000001978) #26	ENSPTRG00000046254	KCTD3 (ENSPTRG00000001979) #27	USH2A (ENSPTRG00000001984) #28	ESRRG (ENSPTRG00000023622) #29	GPATCH2 (ENSPTRG00000001986) #30	SPATA17 (ENSPTRG00000001988) #31	RRP15 (ENSPTRG00000039779) #32	TGFB2 (ENSPTRG00000001992) #33	LYPLAL1 (ENSPTRG00000001993) #35	SLC30A10 (ENSPTRG00000001994) #36
Bonobo	MODERN SPECIES		DTL (ENSPPAG00000030472) #8	PPP2R5A (ENSPPAG00000015631) #9	ENSPPAG00000029595	PACC1 (ENSPPAG00000027044) #10	ENSPPAG00000040317	ATF3 (ENSPPAG00000029919) #12	GARIN4 (ENSPPAG00000013681)	BATF3 (ENSPPAG00000028294) #13	NSL1 (ENSPPAG00000002209) #14	TATDN3 (ENSPPAG00000036534) #15	SPATA45 (ENSPPAG00000034742)	FLVCR1 (ENSPPAG00000037631) #17	VASH2 (ENSPPAG00000033209) #18	ANGEL2 (ENSPPAG00000031266) #19	RPS6KC1 (ENSPPAG00000004085) #21	PROX1 (ENSPPAG00000035353) #22	SMYD2 (ENSPPAG00000031724) #23	PTPN14 (ENSPPAG00000030914) #24	CENPF (ENSPPAG00000030416) #25	KCNK2 (ENSPPAG00000030707) #26	ENSPPAG00000034142	KCTD3 (ENSPPAG00000041980) #27	USH2A (ENSPPAG00000030873) #28	ESRRG (ENSPPAG00000035120) #29	GPATCH2 (ENSPPAG00000038887) #30	SPATA17 (ENSPPAG00000031018) #31	ENSPPAG00000018811	RRP15 (ENSPPAG00000042109) #32	TGFB2 (ENSPPAG00000030603) #33	LYPLAL1 (ENSPPAG00000038656) #35	SLC30A10 (ENSPPAG00000041238) #36
Human	MODERN SPECIES		INTS7 (ENSG00000143493) #7	DTL (ENSG00000143476) #8	PPP2R5A (ENSG00000066027) #9	PACC1 (ENSG00000065600) #10	NENF (ENSG00000117691) #11	ATF3 (ENSG00000162772) #12	GARIN4 (ENSG00000162771)	BATF3 (ENSG00000123685) #13	NSL1 (ENSG00000117697) #14	TATDN3 (ENSG00000203705) #15	SPATA45 (ENSG00000185523)	FLVCR1 (ENSG00000162769) #17	VASH2 (ENSG00000143494) #18	ANGEL2 (ENSG00000174606) #19	RPS6KC1 (ENSG00000136643) #21	PROX1 (ENSG00000117707) #22	SMYD2 (ENSG00000143499) #23	PTPN14 (ENSG00000152104) #24	CENPF (ENSG00000117724) #25	KCNK2 (ENSG00000082482) #26	KCTD3 (ENSG00000136636) #27	USH2A (ENSG00000042781) #28	ESRRG (ENSG00000196482) #29	GPATCH2 (ENSG00000092978) #30	SPATA17 (ENSG00000162814) #31	RRP15 (ENSG00000067533) #32	TGFB2 (ENSG00000092969) #33	LYPLAL1 (ENSG00000143353) #35	ZC3H11B (ENSG00000215817)	SLC30A10 (ENSG00000196660) #36	EPRS1 (ENSG00000136628) #37
Gorilla	MODERN SPECIES		DTL (ENSGGOG00000012154) #8	PPP2R5A (ENSGGOG00000014986) #9	ENSGGOG00000025513	PACC1 (ENSGGOG00000008925) #10	NENF (ENSGGOG00000025197) #11	ATF3 (ENSGGOG00000014206) #12	GARIN4 (ENSGGOG00000002765)	BATF3 (ENSGGOG00000042619) #13	NSL1 (ENSGGOG00000003473) #14	TATDN3 (ENSGGOG00000027473) #15	SPATA45 (ENSGGOG00000037749)	FLVCR1 (ENSGGOG00000001738) #17	VASH2 (ENSGGOG00000004494) #18	ANGEL2 (ENSGGOG00000009560) #19	RPS6KC1 (ENSGGOG00000002154) #21	PROX1 (ENSGGOG00000015130) #22	SMYD2 (ENSGGOG00000005698) #23	PTPN14 (ENSGGOG00000000957) #24	ENSGGOG00000036819	CENPF (ENSGGOG00000002373) #25	KCNK2 (ENSGGOG00000022229) #26	ENSGGOG00000040219	USH2A (ENSGGOG00000009561) #28	ESRRG (ENSGGOG00000010263) #29	GPATCH2 (ENSGGOG00000009440) #30	SPATA17 (ENSGGOG00000009448) #31	KCTD3 (ENSGGOG00000001811) #27	RRP15 (ENSGGOG00000016603) #32	TGFB2 (ENSGGOG00000004593) #33	LYPLAL1 (ENSGGOG00000001773) #35	ENSGGOG00000008911
Orangutan	MODERN SPECIES		DTL (ENSPPYG00000000238) #8	ENSPPYG00000011541	PPP2R5A (ENSPPYG00000000237) #9	PACC1 (ENSPPYG00000029432) #10	NENF (ENSPPYG00000000236) #11	ATF3 (ENSPPYG00000000235) #12	GARIN4 (ENSPPYG00000040057)	BATF3 (ENSPPYG00000000234) #13	NSL1 (ENSPPYG00000000233) #14	TATDN3 (ENSPPYG00000000232) #15	SPATA45 (ENSPPYG00000000231)	FLVCR1 (ENSPPYG00000000229) #17	VASH2 (ENSPPYG00000000228) #18	ANGEL2 (ENSPPYG00000000227) #19	RPS6KC1 (ENSPPYG00000000226) #21	PROX1 (ENSPPYG00000000224) #22	SMYD2 (ENSPPYG00000000223) #23	PTPN14 (ENSPPYG00000000222) #24	CENPF (ENSPPYG00000000221) #25	KCNK2 (ENSPPYG00000000220) #26	KCTD3 (ENSPPYG00000000219) #27	USH2A (ENSPPYG00000000218) #28	ESRRG (ENSPPYG00000000217) #29	GPATCH2 (ENSPPYG00000000216) #30	SPATA17 (ENSPPYG00000000215) #31	RRP15 (ENSPPYG00000000214) #32	TGFB2 (ENSPPYG00000000213) #33	LYPLAL1 (ENSPPYG00000000212) #35	SLC30A10 (ENSPPYG00000000211) #36	EPRS1 (ENSPPYG00000000210) #37	BPNT1 (ENSPPYG00000000209)
Gibbon	MODERN SPECIES	20	FYB2 (ENSNLEG00000014691)	PRKAA2 (ENSNLEG00000014678)	PLPP3 (ENSNLEG00000031721)	ENSNLEG00000016180	USP24 (ENSNLEG00000014601)	PCSK9 (ENSNLEG00000014590)	ENSNLEG00000014589	TMEM61 (ENSNLEG00000014586)	DHCR24 (ENSNLEG00000014578)	LEXM (ENSNLEG00000014568)	TTC22 (ENSNLEG00000014562)	FLVCR1 (ENSNLEG00000014539) #17	ENSNLEG00000014519 #18	ANGEL2 (ENSNLEG00000014500) #19	RPS6KC1 (ENSNLEG00000014441) #21	PROX1 (ENSNLEG00000014435) #22	SMYD2 (ENSNLEG00000014428) #23	PTPN14 (ENSNLEG00000014407) #24	CENPF (ENSNLEG00000014381) #25	ENSNLEG00000033042	KCNK2 (ENSNLEG00000014361) #26	KCTD3 (ENSNLEG00000014312) #27	USH2A (ENSNLEG00000014249) #28	ESRRG (ENSNLEG00000014216) #29	GPATCH2 (ENSNLEG00000014201) #30	ENSNLEG00000028800	SPATA17 (ENSNLEG00000014182) #31	RRP15 (ENSNLEG00000031373) #32	TGFB2 (ENSNLEG00000014141) #33	LYPLAL1 (ENSNLEG00000032025) #35	SLC30A10 (ENSNLEG00000014114) #36
Cercopithecidae	ANCESTRAL SPECIES	20	ENSGT00390000011724 #7	ENSGT00530000064210 #8	ENSGT01030000234620.a.b.b.b #9	ENSGT00390000017528 #10	ENSGT00940000162504 #11	ENSGT00940000156376 #12	ENSGT00940000162770	ENSGT00940000161120 #13	ENSGT00390000001374.f #14	ENSGT00720000108846.a #15	ENSGT00390000018676	ENSGT01030000234625.B.c #17	ENSGT00390000012703.a #18	ENSGT00940000157391 #19	ENSGT00940000155656 #21	ENSGT00940000154790.a.a.b #22	ENSGT00940000157082 #23	ENSGT00940000156874 #24	ENSGT00730000111187.b #25	ENSGT00940000156560 #26	ENSGT00940000153881.a #27	ENSGT00940000158456 #28	ENSGT00940000153433.B.a.b #29	ENSGT00410000025698.a #30	ENSGT00390000011270 #31	ENSGT00390000001960 #32	ENSGT00940000157390 #33	ENSGT00940000159171 #35	ENSGT00940000159967 #36	ENSGT00550000074815 #37	ENSGT00940000157359
Cercopithecinae	ANCESTRAL SPECIES	18	ENSGT00390000011724 #7	ENSGT00530000064210 #8	ENSGT01030000234620.a.b.b.b #9	ENSGT00390000017528 #10	ENSGT00940000162504 #11	ENSGT00940000156376 #12	ENSGT00940000162770	ENSGT00940000161120 #13	ENSGT00390000001374.f #14	ENSGT00720000108846.a #15	ENSGT00390000018676	ENSGT01030000234625.B.c #17	ENSGT00390000012703.a #18	ENSGT00940000157391 #19	ENSGT00940000155656 #21	ENSGT00940000154790.a.a.b #22	ENSGT00940000157082 #23	ENSGT00940000156874 #24	ENSGT00730000111187.b #25	ENSGT00940000156560 #26	ENSGT00940000153881.a #27	ENSGT00940000158456 #28	ENSGT00940000153433.B.a.b #29	ENSGT00410000025698.a #30	ENSGT00390000011270 #31	ENSGT00390000001960 #32	ENSGT00940000157390 #33	ENSGT00940000159171 #35	ENSGT00940000159967 #36	ENSGT00550000074815 #37	ENSGT00940000157359
Vervet Monkey	MODERN SPECIES	17	INTS7 (ENSCSAG00000015377) #7	DTL (ENSCSAG00000015380) #8	PPP2R5A (ENSCSAG00000015387) #9	PACC1 (ENSCSAG00000015392) #10	NENF (ENSCSAG00000015395) #11	ATF3 (ENSCSAG00000015405) #12	GARIN4 (ENSCSAG00000000263)	BATF3 (ENSCSAG00000015412) #13	NSL1 (ENSCSAG00000015419) #14	TATDN3 (ENSCSAG00000015424) #15	ENSCSAG00000015430	FLVCR1 (ENSCSAG00000015440) #17	VASH2 (ENSCSAG00000015494) #18	ANGEL2 (ENSCSAG00000015513) #19	RPS6KC1 (ENSCSAG00000015524) #21	PROX1 (ENSCSAG00000015530) #22	SMYD2 (ENSCSAG00000015537) #23	PTPN14 (ENSCSAG00000015544) #24	CENPF (ENSCSAG00000015553) #25	KCNK2 (ENSCSAG00000015559) #26	ENSCSAG00000000264	ENSCSAG00000015567	KCTD3 (ENSCSAG00000015574) #27	USH2A (ENSCSAG00000015644) #28	ESRRG (ENSCSAG00000015679) #29	ENSCSAG00000015701 #30	ENSCSAG00000015704 #30	SPATA17 (ENSCSAG00000015709) #31	RRP15 (ENSCSAG00000015713) #32	TGFB2 (ENSCSAG00000015715) #33	ENSCSAG00000015738
Cercopithecinae_a	ANCESTRAL SPECIES		ENSGT00390000011724 #7	ENSGT00530000064210 #8	ENSGT01030000234620.a.b.b.b #9	ENSGT00390000017528 #10	ENSGT00940000162504 #11	ENSGT00940000156376 #12	ENSGT00940000162770	ENSGT00940000161120 #13	ENSGT00390000001374.f #14	ENSGT00720000108846.a #15	ENSGT00390000018676	ENSGT01030000234625.B.c #17	ENSGT00390000012703.a #18	ENSGT00940000157391 #19	ENSGT00940000155656 #21	ENSGT00940000154790.a.a.b #22	ENSGT00940000157082 #23	ENSGT00940000156874 #24	ENSGT00730000111187.b #25	ENSGT00940000156560 #26	ENSGT00940000153881.a #27	ENSGT00940000158456 #28	ENSGT00940000153433.B.a.b #29	ENSGT00410000025698.a #30	ENSGT00390000011270 #31	ENSGT00390000001960 #32	ENSGT00940000157390 #33	ENSGT00940000159171 #35	ENSGT00940000154879.lb.a.a	ENSGT00940000159967 #36	ENSGT00550000074815 #37
Macaca	ANCESTRAL SPECIES		ENSGT00390000011724 #7	ENSGT00530000064210 #8	ENSGT01030000234620.a.b.b.b #9	ENSGT00390000017528 #10	ENSGT00940000162504 #11	ENSGT00940000156376 #12	ENSGT00940000162770	ENSGT00940000161120 #13	ENSGT00390000001374.f #14	ENSGT00720000108846.a #15	ENSGT00390000018676	ENSGT01030000234625.B.c #17	ENSGT00390000012703.a #18	ENSGT00940000157391 #19	ENSGT00940000155656 #21	ENSGT00940000154790.a.a.b #22	ENSGT00940000157082 #23	ENSGT00940000156874 #24	ENSGT00730000111187.b #25	ENSGT00940000156560 #26	ENSGT00940000153881.a #27	ENSGT00940000158456 #28	ENSGT00940000153433.B.a.b #29	ENSGT00410000025698.a #30	ENSGT00390000011270 #31	ENSGT00390000001960 #32	ENSGT00940000157390 #33	ENSGT00940000159171 #35	ENSGT00940000154879.lb.a.a	ENSGT00940000159967 #36	ENSGT00550000074815 #37
Pig-tailed macaque	MODERN SPECIES	204	LPGAT1 (ENSMNEG00000038962)	INTS7 (ENSMNEG00000031972) #7	DTL (ENSMNEG00000029309) #8	PPP2R5A (ENSMNEG00000044046) #9	PACC1 (ENSMNEG00000040751) #10	NENF (ENSMNEG00000036836) #11	ATF3 (ENSMNEG00000044528) #12	BATF3 (ENSMNEG00000012965) #13	ENSMNEG00000021942	NSL1 (ENSMNEG00000034616) #14	TATDN3 (ENSMNEG00000033507) #15	FLVCR1 (ENSMNEG00000029472) #17	VASH2 (ENSMNEG00000020215) #18	ANGEL2 (ENSMNEG00000027131) #19	RPS6KC1 (ENSMNEG00000029897) #21	PROX1 (ENSMNEG00000031336) #22	SMYD2 (ENSMNEG00000037770) #23	PTPN14 (ENSMNEG00000029573) #24	CENPF (ENSMNEG00000040232) #25	ENSMNEG00000001691	ENSMNEG00000000754	KCNK2 (ENSMNEG00000035782) #26	KCTD3 (ENSMNEG00000029482) #27	USH2A (ENSMNEG00000030217) #28	ESRRG (ENSMNEG00000042999) #29	GPATCH2 (ENSMNEG00000034969) #30	SPATA17 (ENSMNEG00000039678) #31	RRP15 (ENSMNEG00000044170) #32	TGFB2 (ENSMNEG00000043377) #33	LYPLAL1 (ENSMNEG00000028805) #35	ENSMNEG00000012078
Macaca_a	ANCESTRAL SPECIES		ENSGT00390000011724 #7	ENSGT00530000064210 #8	ENSGT01030000234620.a.b.b.b #9	ENSGT00390000017528 #10	ENSGT00940000162504 #11	ENSGT00940000156376 #12	ENSGT00940000162770	ENSGT00940000161120 #13	ENSGT00390000001374.f #14	ENSGT00720000108846.a #15	ENSGT00390000018676	ENSGT01030000234625.B.c #17	ENSGT00390000012703.a #18	ENSGT00940000157391 #19	ENSGT00940000155656 #21	ENSGT00940000154790.a.a.b #22	ENSGT00940000157082 #23	ENSGT00940000156874 #24	ENSGT00730000111187.b #25	ENSGT00940000156560 #26	ENSGT00940000153881.a #27	ENSGT00940000158456 #28	ENSGT00940000153433.B.a.b #29	ENSGT00410000025698.a #30	ENSGT00390000011270 #31	ENSGT00390000001960 #32	ENSGT00940000157390 #33	ENSGT00940000159171 #35	ENSGT00940000154879.lb.a.a	ENSGT00940000159967 #36	ENSGT00550000074815 #37
Rhesus	MODERN SPECIES		DTL (ENSMMUG00000010176) #8	PPP2R5A (ENSMMUG00000019771) #9	PACC1 (ENSMMUG00000002141) #10	NENF (ENSMMUG00000002142) #11	ATF3 (ENSMMUG00000012185) #12	GARIN4 (ENSMMUG00000052576)	BATF3 (ENSMMUG00000015056) #13	NSL1 (ENSMMUG00000019287) #14	TATDN3 (ENSMMUG00000031430) #15	ENSMMUG00000051591	SPATA45 (ENSMMUG00000059169)	FLVCR1 (ENSMMUG00000011732) #17	VASH2 (ENSMMUG00000011733) #18	ANGEL2 (ENSMMUG00000011735) #19	RPS6KC1 (ENSMMUG00000005210) #21	PROX1 (ENSMMUG00000011914) #22	SMYD2 (ENSMMUG00000015631) #23	PTPN14 (ENSMMUG00000015632) #24	CENPF (ENSMMUG00000015634) #25	ENSMMUG00000031435	KCNK2 (ENSMMUG00000016931) #26	KCTD3 (ENSMMUG00000022639) #27	USH2A (ENSMMUG00000022640) #28	ENSMMUG00000056375	ESRRG (ENSMMUG00000014167) #29	GPATCH2 (ENSMMUG00000014946) #30	SPATA17 (ENSMMUG00000007213) #31	RRP15 (ENSMMUG00000004070) #32	TGFB2 (ENSMMUG00000004071) #33	ENSMMUG00000052461	ENSMMUG00000057626
Crab-eating macaque	MODERN SPECIES		DTL (ENSMFAG00000045273) #8	PPP2R5A (ENSMFAG00000034643) #9	ENSMFAG00000065004	PACC1 (ENSMFAG00000042534) #10	NENF (ENSMFAG00000061910) #11	ENSMFAG00000058853	ENSMFAG00000033392 #12	GARIN4 (ENSMFAG00000001230)	ENSMFAG00000031859 #13	NSL1 (ENSMFAG00000042309) #14	TATDN3 (ENSMFAG00000041006) #15	FLVCR1 (ENSMFAG00000032026) #17	VASH2 (ENSMFAG00000041909) #18	ANGEL2 (ENSMFAG00000039813) #19	RPS6KC1 (ENSMFAG00000034322) #21	PROX1 (ENSMFAG00000042228) #22	SMYD2 (ENSMFAG00000022994) #23	PTPN14 (ENSMFAG00000001580) #24	CENPF (ENSMFAG00000038702) #25	KCNK2 (ENSMFAG00000037275) #26	KCTD3 (ENSMFAG00000042976) #27	USH2A (ENSMFAG00000043973) #28	ENSMFAG00000016818	ESRRG (ENSMFAG00000004706) #29	ENSMFAG00000055622	GPATCH2 (ENSMFAG00000000617) #30	SPATA17 (ENSMFAG00000030832) #31	RRP15 (ENSMFAG00000046095) #32	TGFB2 (ENSMFAG00000054210) #33	LYPLAL1 (ENSMFAG00000003062) #35	ENSMFAG00000030239
Cercopithecinae_b	ANCESTRAL SPECIES	3	ENSGT00390000011724 #7	ENSGT00530000064210 #8	ENSGT01030000234620.a.b.b.b #9	ENSGT00390000017528 #10	ENSGT00940000162504 #11	ENSGT00940000156376 #12	ENSGT00940000162770	ENSGT00940000161120 #13	ENSGT00390000001374.f #14	ENSGT00720000108846.a #15	ENSGT00390000018676	ENSGT01030000234625.B.c #17	ENSGT00390000012703.a #18	ENSGT00940000157391 #19	ENSGT00940000155656 #21	ENSGT00940000154790.a.a.b #22	ENSGT00940000157082 #23	ENSGT00940000156874 #24	ENSGT00730000111187.b #25	ENSGT00940000156560 #26	ENSGT00940000153881.a #27	ENSGT00950000183080.a.b.a.b.b.ab	ENSGT00940000158456 #28	ENSGT00940000153433.B.a.b #29	ENSGT00410000025698.a #30	ENSGT00390000011270 #31	ENSGT00390000001960 #32	ENSGT00940000157390 #33	ENSGT00940000159171 #35	ENSGT00940000154879.lb.a.a	ENSGT00940000159967 #36
Olive baboon	MODERN SPECIES		ENSPANG00000039397	NENF (ENSPANG00000007781) #11	ATF3 (ENSPANG00000021687) #12	GARIN4 (ENSPANG00000008984)	BATF3 (ENSPANG00000046484) #13	ENSPANG00000044876	ENSPANG00000037410	NSL1 (ENSPANG00000021442) #14	TATDN3 (ENSPANG00000026097) #15	SPATA45 (ENSPANG00000003460)	FLVCR1 (ENSPANG00000015223) #17	ENSPANG00000040581	VASH2 (ENSPANG00000008486) #18	ANGEL2 (ENSPANG00000024020) #19	RPS6KC1 (ENSPANG00000017815) #21	PROX1 (ENSPANG00000017714) #22	SMYD2 (ENSPANG00000013753) #23	PTPN14 (ENSPANG00000003305) #24	CENPF (ENSPANG00000002386) #25	ENSPANG00000007591	KCNK2 (ENSPANG00000010636) #26	ENSPANG00000039006	KCTD3 (ENSPANG00000016718) #27	ENSPANG00000020677	USH2A (ENSPANG00000010480) #28	ESRRG (ENSPANG00000014193) #29	ENSPANG00000040866	GPATCH2 (ENSPANG00000020943) #30	SPATA17 (ENSPANG00000012134) #31	ENSPANG00000045253	RRP15 (ENSPANG00000016573) #32
Cercopithecinae_d	ANCESTRAL SPECIES	67	ENSGT00950000182836.b.a.b	ENSGT00390000011724 #7	ENSGT00530000064210 #8	ENSGT01030000234620.a.b.b.b #9	ENSGT00390000017528 #10	ENSGT00940000162504 #11	ENSGT00940000156376 #12	ENSGT00940000161120 #13	ENSGT00390000001374.f #14	ENSGT00720000108846.a #15	ENSGT00390000018676	ENSGT01030000234625.B.c #17	ENSGT00390000012703.a #18	ENSGT00940000157391 #19	ENSGT00940000155656 #21	ENSGT00940000154790.a.a.b #22	ENSGT00940000157082 #23	ENSGT00940000156874 #24	ENSGT00730000111187.b #25	ENSGT00940000156560 #26	ENSGT00940000153881.a #27	ENSGT00950000183080.a.b.a.b.b.ab	ENSGT00940000158456 #28	ENSGT00940000153433.B.a.b #29	ENSGT00410000025698.a #30	ENSGT00390000011270 #31	ENSGT00390000001960 #32	ENSGT00940000157390 #33	ENSGT00940000159171 #35	ENSGT00940000159967 #36	ENSGT00550000074815 #37
Drill	MODERN SPECIES	1196								NSL1 (ENSMLEG00000028636) #14	ENSMLEG00000035745	TATDN3 (ENSMLEG00000039404) #15	SPATA45 (ENSMLEG00000040911)	FLVCR1 (ENSMLEG00000033007) #17	VASH2 (ENSMLEG00000029869) #18	ANGEL2 (ENSMLEG00000031699) #19	RPS6KC1 (ENSMLEG00000029917) #21	PROX1 (ENSMLEG00000036413) #22	SMYD2 (ENSMLEG00000034225) #23	PTPN14 (ENSMLEG00000033075) #24	CENPF (ENSMLEG00000037072) #25	KCNK2 (ENSMLEG00000042490) #26
Sooty mangabey	MODERN SPECIES	513	LPGAT1 (ENSCATG00000030005)	INTS7 (ENSCATG00000034492) #7	DTL (ENSCATG00000040087) #8	PPP2R5A (ENSCATG00000045120) #9	PACC1 (ENSCATG00000012633) #10	NENF (ENSCATG00000044551) #11	ATF3 (ENSCATG00000037360) #12	BATF3 (ENSCATG00000037195) #13	NSL1 (ENSCATG00000045286) #14	TATDN3 (ENSCATG00000045213) #15	SPATA45 (ENSCATG00000015825)	FLVCR1 (ENSCATG00000040192) #17	VASH2 (ENSCATG00000042912) #18	ANGEL2 (ENSCATG00000031702) #19	RPS6KC1 (ENSCATG00000013042) #21	PROX1 (ENSCATG00000038887) #22	SMYD2 (ENSCATG00000043581) #23	PTPN14 (ENSCATG00000038177) #24	CENPF (ENSCATG00000040315) #25	KCNK2 (ENSCATG00000015955) #26	KCTD3 (ENSCATG00000040895) #27	ENSCATG00000034336	USH2A (ENSCATG00000029777) #28	ESRRG (ENSCATG00000044398) #29	GPATCH2 (ENSCATG00000038238) #30	SPATA17 (ENSCATG00000025059) #31	RRP15 (ENSCATG00000021235) #32	TGFB2 (ENSCATG00000030306) #33	LYPLAL1 (ENSCATG00000043110) #35	SLC30A10 (ENSCATG00000033354) #36	EPRS1 (ENSCATG00000045050) #37
Rhinopithecus	ANCESTRAL SPECIES	379						ENSGT00940000162504 #11	ENSGT00940000156376 #12	ENSGT00940000161120 #13	ENSGT00390000001374.f #14	ENSGT00720000108846.a #15	ENSGT00390000018676	ENSGT01030000234625.B.c #17	ENSGT00390000012703.a #18	ENSGT00940000157391 #19	ENSGT00940000155656 #21	ENSGT00940000154790.a.a.b #22	ENSGT00940000157082 #23	ENSGT00940000156874 #24	ENSGT00730000111187.b #25
Black snub-nosed monkey	MODERN SPECIES	255																PROX1 (ENSRBIG00000040759) #22	SMYD2 (ENSRBIG00000030110) #23	PTPN14 (ENSRBIG00000021235) #24	CENPF (ENSRBIG00000031040) #25	AP1G1 (ENSRBIG00000018408)	PHLPP2 (ENSRBIG00000042103)	MARVELD3 (ENSRBIG00000034252)	TAT (ENSRBIG00000034409)	ENSRBIG00000031232	ZNF19 (ENSRBIG00000033441)	ZNF23 (ENSRBIG00000035403)	TLE7 (ENSRBIG00000034413)	CALB2 (ENSRBIG00000040466)	HYDIN (ENSRBIG00000028337)	ENSRBIG00000005851	VAC14 (ENSRBIG00000031397)
Golden snub-nosed monkey	MODERN SPECIES	1701												FLVCR1 (ENSRROG00000036850) #17	VASH2 (ENSRROG00000041014) #18	ANGEL2 (ENSRROG00000045523) #19	RPS6KC1 (ENSRROG00000041969) #21	PROX1 (ENSRROG00000032338) #22	SMYD2 (ENSRROG00000041537) #23	PTPN14 (ENSRROG00000035190) #24	CENPF (ENSRROG00000010374) #25
Tarsier	MODERN SPECIES	6545															ENSTSYG00000031950	PROX1 (ENSTSYG00000002059) #22	SMYD2 (ENSTSYG00000003056) #23	PTPN14 (ENSTSYG00000002550) #24	ENSTSYG00000029306	CENPF (ENSTSYG00000007079) #25
Strepsirrhini	ANCESTRAL SPECIES		ENSGT00390000011724 #7	ENSGT00530000064210 #8	ENSGT01030000234620.a.b.b.b #9	ENSGT00390000017528 #10	ENSGT00940000162504 #11	ENSGT00940000156376 #12	ENSGT00940000162770	ENSGT00940000161120 #13	ENSGT00390000001374 #14	ENSGT00720000108846.a #15	ENSGT00390000018676	ENSGT01030000234625.B.c.m #17	ENSGT00390000012703.a #18	ENSGT00940000157391 #19	ENSGT00940000155656 #21	ENSGT00940000154790.a.a.b #22	ENSGT00940000157082 #23	ENSGT00940000156874 #24	ENSGT00730000111187.b #25	ENSGT00940000156560.a #26	ENSGT00940000156560.b #26	ENSGT00940000153881.a #27	ENSGT00940000158456 #28	ENSGT00940000153433.B.a.b #29	ENSGT00410000025698.a #30	ENSGT00390000011270 #31	ENSGT00390000001960 #32	ENSGT00940000157390 #33	ENSGT00940000159171 #35	ENSGT00940000159967 #36	ENSGT00550000074815 #37
Bushbaby	MODERN SPECIES	344													RPS6KC1 (ENSOGAG00000013193) #21	ENSOGAG00000024451	ENSOGAG00000000449	PROX1 (ENSOGAG00000017025) #22	SMYD2 (ENSOGAG00000017028) #23	ENSOGAG00000033159	PTPN14 (ENSOGAG00000017030) #24	CENPF (ENSOGAG00000001123) #25	ENSOGAG00000033696 #26
Lemuriformes	ANCESTRAL SPECIES	26	ENSGT00390000011724 #7	ENSGT00530000064210 #8	ENSGT01030000234620.a.b.b.b #9	ENSGT00390000017528 #10	ENSGT00940000162504 #11	ENSGT00940000156376 #12	ENSGT00940000162770	ENSGT00940000161120 #13	ENSGT00390000001374 #14	ENSGT00720000108846.a #15	ENSGT00390000018676	ENSGT01030000234625.B.c.m #17	ENSGT00390000012703.a #18	ENSGT00940000157391 #19	ENSGT00940000155656 #21	ENSGT00940000154790.a.a.b #22	ENSGT00940000157082 #23	ENSGT00940000156874 #24	ENSGT00730000111187.b #25	ENSGT00940000156560.b #26	ENSGT00940000153881.a #27	ENSGT00940000158456 #28	ENSGT00940000153433.B.a.b #29	ENSGT00410000025698.a #30	ENSGT00390000011270 #31	ENSGT00390000001960 #32	ENSGT00940000157390 #33	ENSGT00940000159171 #35	ENSGT00940000159967 #36	ENSGT00550000074815 #37	ENSGT00940000157359
Lemuriformes_a	ANCESTRAL SPECIES	12	ENSGT00390000011724 #7	ENSGT00530000064210 #8	ENSGT01030000234620.a.b.b.b #9	ENSGT00390000017528 #10	ENSGT00940000162504 #11	ENSGT00940000156376 #12	ENSGT00940000162770	ENSGT00940000161120 #13	ENSGT00390000001374 #14	ENSGT00720000108846.a #15	ENSGT00390000018676	ENSGT01030000234625.B.c.m #17	ENSGT00390000012703.a #18	ENSGT00940000157391 #19	ENSGT00940000155656 #21	ENSGT00940000154790.a.a.b #22	ENSGT00940000157082 #23	ENSGT00940000156874 #24	ENSGT00730000111187.b #25	ENSGT00940000156560.a #26	ENSGT00940000153881.a #27	ENSGT00940000158456 #28	ENSGT00940000153433.B.a.b #29	ENSGT00410000025698.a #30	ENSGT00390000011270 #31	ENSGT00390000001960 #32	ENSGT00940000157390 #33	ENSGT00940000159171 #35	ENSGT00940000159967 #36	ENSGT00940000179241	ENSGT00550000074815 #37
Coquerels sifaka	MODERN SPECIES	136	ENSPCOG00000017872	DTL (ENSPCOG00000023467) #8	PPP2R5A (ENSPCOG00000023720) #9	PACC1 (ENSPCOG00000019194) #10	ENSPCOG00000025541 #11	ATF3 (ENSPCOG00000014411) #12	GARIN4 (ENSPCOG00000023922)	BATF3 (ENSPCOG00000020309) #13	NSL1 (ENSPCOG00000023360) #14	ENSPCOG00000013500	SPATA45 (ENSPCOG00000011584)	FLVCR1 (ENSPCOG00000023146) #17	VASH2 (ENSPCOG00000018323) #18	ANGEL2 (ENSPCOG00000024621) #19	RPS6KC1 (ENSPCOG00000023248) #21	PROX1 (ENSPCOG00000018563) #22	SMYD2 (ENSPCOG00000028523) #23	PTPN14 (ENSPCOG00000006004) #24	CENPF (ENSPCOG00000013597) #25	KCNK2 (ENSPCOG00000001877) #26	KCTD3 (ENSPCOG00000008460) #27
Greater bamboo lemur	MODERN SPECIES	542	INTS7 (ENSPSMG00000024557) #7	DTL (ENSPSMG00000024600) #8	PPP2R5A (ENSPSMG00000024611) #9	PACC1 (ENSPSMG00000024623) #10	NENF (ENSPSMG00000024628) #11	ATF3 (ENSPSMG00000024632) #12	ENSPSMG00000024639	BATF3 (ENSPSMG00000024644) #13	NSL1 (ENSPSMG00000024661) #14	TATDN3 (ENSPSMG00000024676) #15	SPATA45 (ENSPSMG00000024684)	FLVCR1 (ENSPSMG00000024687) #17	VASH2 (ENSPSMG00000024701) #18	ANGEL2 (ENSPSMG00000024726) #19	RPS6KC1 (ENSPSMG00000024765) #21	PROX1 (ENSPSMG00000024779) #22	SMYD2 (ENSPSMG00000024785) #23	PTPN14 (ENSPSMG00000024802) #24	CENPF (ENSPSMG00000024824) #25	KCNK2 (ENSPSMG00000000095) #26
Mouse lemur	MODERN SPECIES	19	LPGAT1 (ENSMICG00000007842)	INTS7 (ENSMICG00000015396) #7	DTL (ENSMICG00000015416) #8	PPP2R5A (ENSMICG00000015435) #9	PACC1 (ENSMICG00000015461) #10	NENF (ENSMICG00000028060) #11	ATF3 (ENSMICG00000033583) #12	GARIN4 (ENSMICG00000037119)	BATF3 (ENSMICG00000027907) #13	NSL1 (ENSMICG00000037746) #14	TATDN3 (ENSMICG00000014664) #15	FLVCR1 (ENSMICG00000027099) #17	VASH2 (ENSMICG00000014703) #18	ANGEL2 (ENSMICG00000014726) #19	ENSMICG00000029442 #21	PROX1 (ENSMICG00000011593) #22
Euarchontoglires_A	ANCESTRAL SPECIES		ENSGT00390000011724 #7	ENSGT00530000064210 #8	ENSGT01030000234620.a.b.b.b #9	ENSGT00390000017528 #10	ENSGT00940000162504 #11	ENSGT00940000156376 #12	ENSGT00940000162770	ENSGT00940000161120 #13	ENSGT00390000001374 #14	ENSGT00720000108846.a #15	ENSGT00390000018676	ENSGT01030000234625.B.c #17	ENSGT00390000012703.a #18	ENSGT00940000157391 #19	ENSGT00940000155656 #21	ENSGT00940000154790.a.a.b #22	ENSGT00940000157082 #23	ENSGT00940000156874 #24	ENSGT00730000111187.b #25	ENSGT00940000156560 #26	ENSGT00940000153881.a #27	ENSGT00940000158456 #28	ENSGT00940000153433.B.a.b #29	ENSGT00410000025698.a #30	ENSGT00390000011270 #31	ENSGT00390000001960 #32	ENSGT00940000157390 #33	ENSGT00940000159171 #35	ENSGT00940000159967 #36	ENSGT00900000143215	ENSGT00550000074815 #37
Tree shrew	MODERN SPECIES	748																PROX1 (ENSTBEG00000013162) #22
Glires	ANCESTRAL SPECIES		ENSGT00390000011724 #7	ENSGT00530000064210 #8	ENSGT01030000234620.a.b.b.b #9	ENSGT00390000017528 #10	ENSGT00940000162504 #11	ENSGT00940000156376 #12	ENSGT00940000162770	ENSGT00940000161120 #13	ENSGT00390000001374 #14	ENSGT00720000108846.a #15	ENSGT00390000018676	ENSGT01030000234625.B.c #17	ENSGT00390000012703.a #18	ENSGT00940000157391 #19	ENSGT00940000155656 #21	ENSGT00940000154790.a.a.b #22	ENSGT00940000157082 #23	ENSGT00940000156874 #24	ENSGT00730000111187.b #25	ENSGT00940000156560 #26	ENSGT00940000153881.a #27	ENSGT00940000158456 #28	ENSGT00940000153433.B.a.b #29	ENSGT00410000025698.a #30	ENSGT00390000011270 #31	ENSGT00390000001960 #32	ENSGT00940000157390 #33	ENSGT00940000159171 #35	ENSGT00940000159967 #36	ENSGT00900000143215	ENSGT00550000074815 #37
Lagomorpha	ANCESTRAL SPECIES	15	ENSGT00950000182836.b.a.b	ENSGT00390000011724 #7	ENSGT00530000064210 #8	ENSGT01030000234620.a.b.b.b #9	ENSGT00390000017528 #10	ENSGT00940000162504 #11	ENSGT00940000156376 #12	ENSGT00940000161120 #13	ENSGT00390000001374 #14	ENSGT00720000108846.a #15	ENSGT00390000018676	ENSGT01030000234625.B.c #17	ENSGT00390000012703.a #18	ENSGT00940000157391 #19	ENSGT00940000155656 #21	ENSGT00940000154790.a.a.b #22	ENSGT00940000157082 #23	ENSGT00940000156874 #24	ENSGT00940000156560 #26	ENSGT00940000153881.a #27	ENSGT00940000158456 #28	ENSGT00940000153433.B.a.b #29	ENSGT00410000025698.a #30	ENSGT00390000011270 #31	ENSGT00390000001960 #32	ENSGT00940000157390 #33	ENSGT00940000159171 #35	ENSGT00940000159967 #36	ENSGT00940000179241	ENSGT00550000074815 #37	ENSGT00940000157359
Pika	MODERN SPECIES	526																PROX1 (ENSOPRG00000005115) #22	SMYD2 (ENSOPRG00000005141) #23	PTPN14 (ENSOPRG00000005166) #24
Rabbit	MODERN SPECIES	7	ENSOCUG00000023322	PPP2R5A (ENSOCUG00000017572) #9	NENF (ENSOCUG00000010810) #11	PACC1 (ENSOCUG00000009061) #10	ATF3 (ENSOCUG00000017424) #12	GARIN4 (ENSOCUG00000017415)	NSL1 (ENSOCUG00000004789) #14	ENSOCUG00000004792 #15	SPATA45 (ENSOCUG00000004799)	FLVCR1 (ENSOCUG00000004804) #17	VASH2 (ENSOCUG00000008579) #18	ANGEL2 (ENSOCUG00000008585) #19	ENSOCUG00000035779	ENSOCUG00000013968	RPS6KC1 (ENSOCUG00000013953) #21	PROX1 (ENSOCUG00000008274) #22	SMYD2 (ENSOCUG00000015379) #23	PTPN14 (ENSOCUG00000015400) #24	KCNK2 (ENSOCUG00000008629) #26	KCTD3 (ENSOCUG00000001943) #27	ENSOCUG00000014710 #28	ESRRG (ENSOCUG00000000984) #29	ENSOCUG00000033147	GPATCH2 (ENSOCUG00000014512) #30	SPATA17 (ENSOCUG00000014523) #31	RRP15 (ENSOCUG00000017863) #32	TGFB2 (ENSOCUG00000005279) #33	LYPLAL1 (ENSOCUG00000000388) #35	ENSOCUG00000007393	ENSOCUG00000038407	ENSOCUG00000022661
Rodentia	ANCESTRAL SPECIES		ENSGT00390000011724 #7	ENSGT00530000064210 #8	ENSGT01030000234620.a.b.b.b #9	ENSGT00390000017528 #10	ENSGT00940000162504 #11	ENSGT00940000156376 #12	ENSGT00940000162770	ENSGT00940000161120 #13	ENSGT00390000001374 #14	ENSGT00720000108846.a #15	ENSGT00390000018676	ENSGT01030000234625.B.c #17	ENSGT00390000012703.a #18	ENSGT00940000157391 #19	ENSGT00940000155656 #21	ENSGT00940000154790.a.a.b #22	ENSGT00940000157082 #23	ENSGT00940000156874 #24	ENSGT00730000111187.b #25	ENSGT00940000156560 #26	ENSGT00940000153881.a #27	ENSGT00940000158456 #28	ENSGT00940000153433.B.a.b #29	ENSGT00410000025698.a #30	ENSGT00390000011270 #31	ENSGT00390000001960 #32	ENSGT00940000157390 #33	ENSGT00940000159171 #35	ENSGT00940000159967 #36	ENSGT00900000143215	ENSGT00550000074815 #37
Rodentia_B	ANCESTRAL SPECIES		ENSGT00390000011724 #7	ENSGT00530000064210 #8	ENSGT01030000234620.a.b.b.b #9	ENSGT00390000017528 #10	ENSGT00940000162504 #11	ENSGT00940000156376 #12	ENSGT00940000162770	ENSGT00940000161120 #13	ENSGT00390000001374 #14	ENSGT00720000108846.a #15	ENSGT00390000018676	ENSGT01030000234625.B.c #17	ENSGT00390000012703.a #18	ENSGT00940000157391 #19	ENSGT00940000155656 #21	ENSGT00940000154790.a.a.b #22	ENSGT00940000157082 #23	ENSGT00940000156874 #24	ENSGT00730000111187.b #25	ENSGT00940000156560 #26	ENSGT00940000153881.a #27	ENSGT00940000158456 #28	ENSGT00940000153433.B.a.b #29	ENSGT00410000025698.a #30	ENSGT00390000011270 #31	ENSGT00390000001960 #32	ENSGT00940000157390 #33	ENSGT00940000159171 #35	ENSGT00940000159967 #36	ENSGT00900000143215	ENSGT00550000074815 #37
Myomorpha	ANCESTRAL SPECIES	48	ENSGT00390000011724 #7	ENSGT00530000064210 #8	ENSGT01030000234620.a.b.b.b #9	ENSGT00390000017528 #10	ENSGT00940000162504 #11	ENSGT00940000156376 #12	ENSGT00940000162770	ENSGT00940000161120 #13	ENSGT00390000001374 #14	ENSGT00720000108846.a #15	ENSGT00390000018676	ENSGT01030000234625.B.c #17	ENSGT00390000012703.a #18	ENSGT00940000157391 #19	ENSGT00940000155656 #21	ENSGT00940000154790.a.a.b #22	ENSGT00940000157082 #23	ENSGT00940000156874 #24	ENSGT00730000111187.b #25	ENSGT00940000156560 #26	ENSGT00940000153881.a #27	ENSGT00940000158456 #28	ENSGT00940000153433.B.a.b #29	ENSGT00410000025698.a #30	ENSGT00390000011270 #31	ENSGT00390000001960 #32	ENSGT00940000157390 #33	ENSGT00940000159171 #35	ENSGT00940000159967 #36	ENSGT00900000143215	ENSGT00550000074815 #37
Muroidea	ANCESTRAL SPECIES	9	ENSGT00390000011724 #7	ENSGT00530000064210 #8	ENSGT01030000234620.a.b.b.b #9	ENSGT00390000017528 #10	ENSGT00940000162504 #11	ENSGT00940000156376 #12	ENSGT00940000162770	ENSGT00940000161120 #13	ENSGT00390000001374 #14	ENSGT00720000108846.a #15	ENSGT00390000018676	ENSGT01030000234625.B.c #17	ENSGT00390000012703.a #18	ENSGT00940000157391 #19	ENSGT00940000155656 #21	ENSGT00940000154790.a.a.b #22	ENSGT00940000157082 #23	ENSGT00940000156874 #24	ENSGT00730000111187.b #25	ENSGT00940000156560 #26	ENSGT00940000153881.a #27	ENSGT00940000158456 #28	ENSGT00940000153433.B.a.b #29	ENSGT00410000025698.a #30	ENSGT00390000011270 #31	ENSGT00390000001960 #32	ENSGT00940000157390 #33	ENSGT00940000159171 #35	ENSGT00940000159967 #36	ENSGT00900000143215	ENSGT00550000074815 #37
Muroidea_A	ANCESTRAL SPECIES	12	ENSGT00390000011724 #7	ENSGT00530000064210 #8	ENSGT01030000234620.a.b.b.b #9	ENSGT00390000017528 #10	ENSGT00940000162504 #11	ENSGT00940000156376 #12	ENSGT00940000162770	ENSGT00940000161120 #13	ENSGT00390000001374 #14	ENSGT00720000108846.a #15	ENSGT00390000018676	ENSGT01030000234625.B.c #17	ENSGT00390000012703.a #18	ENSGT00940000157391 #19	ENSGT00940000155656 #21	ENSGT00940000154790.a.a.b #22	ENSGT00940000157082 #23	ENSGT00940000156874 #24	ENSGT00730000111187.b #25	ENSGT00940000156560 #26	ENSGT00940000153881.a #27	ENSGT00940000158456 #28	ENSGT00940000153433.B.a.b #29	ENSGT00410000025698.a #30	ENSGT00390000011270 #31	ENSGT00390000001960 #32	ENSGT00940000157390 #33	ENSGT00940000159171 #35	ENSGT00940000159967 #36	ENSGT00900000143215	ENSGT00550000074815 #37
Cricetidae	ANCESTRAL SPECIES	13	ENSGT00390000011724 #7	ENSGT00530000064210 #8	ENSGT01030000234620.a.b.b.b #9	ENSGT00390000017528 #10	ENSGT00940000162504 #11	ENSGT00940000156376 #12	ENSGT00940000162770	ENSGT00940000161120 #13	ENSGT00390000001374 #14	ENSGT00720000108846.a #15	ENSGT00390000018676	ENSGT01030000234625.B.c #17	ENSGT00390000012703.a #18	ENSGT00940000157391 #19	ENSGT00940000155656 #21	ENSGT00940000154790.a.a.b #22	ENSGT00940000157082 #23	ENSGT00940000156874 #24	ENSGT00730000111187.b #25	ENSGT00940000156560 #26	ENSGT00940000153881.a #27	ENSGT00940000158456 #28	ENSGT00940000153433.B.a.b #29	ENSGT00410000025698.a #30	ENSGT00390000011270 #31	ENSGT00390000001960 #32	ENSGT00940000157390 #33	ENSGT00940000159171 #35	ENSGT00940000159967 #36	ENSGT00900000143215	ENSGT00550000074815 #37
Cricetinae	ANCESTRAL SPECIES	4	ENSGT00390000011724 #7	ENSGT00530000064210 #8	ENSGT01030000234620.a.b.b.b #9	ENSGT00390000017528 #10	ENSGT00940000162504 #11	ENSGT00940000156376 #12	ENSGT00940000162770	ENSGT00940000161120 #13	ENSGT00390000001374 #14	ENSGT00720000108846.a #15	ENSGT00390000018676	ENSGT01030000234625.B.c #17	ENSGT00390000012703.a #18	ENSGT00940000157391 #19	ENSGT00940000155656 #21	ENSGT00940000154790.a.a.b #22	ENSGT00940000157082 #23	ENSGT00940000156874 #24	ENSGT00730000111187.b #25	ENSGT00940000156560 #26	ENSGT00940000153881.a #27	ENSGT00940000158456 #28	ENSGT00940000153433.B.a.b #29	ENSGT00410000025698.a #30	ENSGT00390000011270 #31	ENSGT00940000154443.b.a	ENSGT00390000001960 #32	ENSGT00940000157390 #33	ENSGT00940000159171 #35	ENSGT00940000159967 #36	ENSGT00900000143215
Chinese hamster chok1gshd	MODERN SPECIES	2	Dtl (ENSCGRG00001023163) #8	Ppp2r5a (ENSCGRG00001002484) #9	Pacc1 (ENSCGRG00001006900) #10	Nenf (ENSCGRG00001012055) #11	Atf3 (ENSCGRG00001013063) #12	Garin4 (ENSCGRG00001010554)	Batf3 (ENSCGRG00001017448) #13	Nsl1 (ENSCGRG00001017667) #14	Tatdn3 (ENSCGRG00001019330) #15	Spata45 (ENSCGRG00001020534)	Flvcr1 (ENSCGRG00001021256) #17	Vash2 (ENSCGRG00001022829) #18	Angel2 (ENSCGRG00001024663) #19	Rps6kc1 (ENSCGRG00001018952) #21	ENSCGRG00001012264	Prox1 (ENSCGRG00001000943) #22	Smyd2 (ENSCGRG00001013013) #23	Ptpn14 (ENSCGRG00001017884) #24	Cenpf (ENSCGRG00001016593) #25	Kcnk2 (ENSCGRG00001013573) #26	Kctd3 (ENSCGRG00001016634) #27	Ush2a (ENSCGRG00001010994) #28	Esrrg (ENSCGRG00001012185) #29	ENSCGRG00001012111	Gpatch2 (ENSCGRG00001024577) #30	Spata17 (ENSCGRG00001019652) #31	D1Pas1 (ENSCGRG00001002373)	Rrp15 (ENSCGRG00001023815) #32	Tgfb2 (ENSCGRG00001021969) #33	ENSCGRG00001012226	Lyplal1 (ENSCGRG00001016783) #35
Golden Hamster	MODERN SPECIES	755	Ints7 (ENSMAUG00000002724) #7	ENSMAUG00000021059 #8	Ppp2r5a (ENSMAUG00000000319) #9	Pacc1 (ENSMAUG00000009322) #10	Nenf (ENSMAUG00000010743) #11	Atf3 (ENSMAUG00000011123) #12	Garin4 (ENSMAUG00000013757)	Batf3 (ENSMAUG00000014205) #13	Nsl1 (ENSMAUG00000016792) #14	Tatdn3 (ENSMAUG00000018308) #15	Spata45 (ENSMAUG00000016023)	Flvcr1 (ENSMAUG00000016771) #17	Vash2 (ENSMAUG00000009215) #18	Angel2 (ENSMAUG00000010091) #19	Rps6kc1 (ENSMAUG00000012269) #21	Prox1 (ENSMAUG00000009474) #22	Smyd2 (ENSMAUG00000010994) #23	Ptpn14 (ENSMAUG00000008419) #24
Cricetidae_B	ANCESTRAL SPECIES	8	ENSGT00390000011724 #7	ENSGT00530000064210 #8	ENSGT01030000234620.a.b.b.b #9	ENSGT00390000017528 #10	ENSGT00940000162504 #11	ENSGT00940000156376 #12	ENSGT00940000162770	ENSGT00940000161120 #13	ENSGT00390000001374 #14	ENSGT00720000108846.a #15	ENSGT00390000018676	ENSGT01030000234625.B.c #17	ENSGT00390000012703.a #18	ENSGT00940000157391 #19	ENSGT00940000155656 #21	ENSGT00940000154790.a.a.b #22	ENSGT00940000157082 #23	ENSGT00940000156874 #24	ENSGT00730000111187.b #25	ENSGT00940000156560 #26	ENSGT00940000153881.a #27	ENSGT00940000158456 #28	ENSGT00940000153433.B.a.b #29	ENSGT00410000025698.a #30	ENSGT00390000011270 #31	ENSGT00390000001960 #32	ENSGT00940000157390 #33	ENSGT00940000159171 #35	ENSGT00940000159967 #36	ENSGT00900000143215	ENSGT00550000074815 #37
Northern American deer mouse	MODERN SPECIES	2	Ppp2r5a (ENSPEMG00000007353) #9	Nenf (ENSPEMG00000004190) #11	ENSPEMG00000024914 #12	Garin4 (ENSPEMG00000027162)	ENSPEMG00000029759 #12	Batf3 (ENSPEMG00000007835) #13	Nsl1 (ENSPEMG00000001946) #14	Tatdn3 (ENSPEMG00000016778) #15	Spata45 (ENSPEMG00000015887)	Flvcr1 (ENSPEMG00000014742) #17	Vash2 (ENSPEMG00000009643) #18	Angel2 (ENSPEMG00000009630) #19	Rps6kc1 (ENSPEMG00000008234) #21	ENSPEMG00000006434	ENSPEMG00000025216 ##22	Prox1 (ENSPEMG00000005585) #22	ENSPEMG00000029028	Smyd2 (ENSPEMG00000016202) #23	Ptpn14 (ENSPEMG00000012598) #24	Cenpf (ENSPEMG00000008292) #25	ENSPEMG00000030532	Kcnk2 (ENSPEMG00000003700) #26	Kctd3 (ENSPEMG00000010370) #27	Ush2a (ENSPEMG00000011465) #28	Esrrg (ENSPEMG00000024753) #29	Gpatch2 (ENSPEMG00000018364) #30	Spata17 (ENSPEMG00000012857) #31	D1Pas1 (ENSPEMG00000010847)	Rrp15 (ENSPEMG00000009408) #32	Tgfb2 (ENSPEMG00000014434) #33	Lyplal1 (ENSPEMG00000012126) #35
Prairie vole	MODERN SPECIES	14	ENSMOCG00000021658 #8	Ppp2r5a (ENSMOCG00000018187) #9	Pacc1 (ENSMOCG00000015297) #10	Nenf (ENSMOCG00000010741) #11	Atf3 (ENSMOCG00000019538) #12	Garin4 (ENSMOCG00000017084)	Batf3 (ENSMOCG00000020540) #13	Nsl1 (ENSMOCG00000020317) #14	Tatdn3 (ENSMOCG00000019831) #15	Spata45 (ENSMOCG00000017094)	Flvcr1 (ENSMOCG00000013229) #17	Vash2 (ENSMOCG00000002399) #18	Angel2 (ENSMOCG00000022027) #19	Rps6kc1 (ENSMOCG00000021401) #21	ENSMOCG00000014377	Prox1 (ENSMOCG00000003310) #22	Smyd2 (ENSMOCG00000000847) #23	Ptpn14 (ENSMOCG00000010851) #24	Cenpf (ENSMOCG00000012377) #25	Kcnk2 (ENSMOCG00000018400) #26	Kctd3 (ENSMOCG00000021391) #27	Esrrg (ENSMOCG00000013956) #29	ENSMOCG00000008935	Gpatch2 (ENSMOCG00000020821) #30	Spata17 (ENSMOCG00000006657) #31	D1Pas1 (ENSMOCG00000002596)	Rrp15 (ENSMOCG00000019339) #32	Tgfb2 (ENSMOCG00000022415) #33	Lyplal1 (ENSMOCG00000019697) #35	Slc30a10 (ENSMOCG00000018487) #36	ENSMOCG00000016971
Murinae	ANCESTRAL SPECIES	11	ENSGT00390000011724 #7	ENSGT00530000064210 #8	ENSGT01030000234620.a.b.b.b #9	ENSGT00390000017528 #10	ENSGT00940000162504 #11	ENSGT00940000156376 #12	ENSGT00940000162770	ENSGT00940000161120 #13	ENSGT00390000001374 #14	ENSGT00720000108846.a #15	ENSGT00390000018676	ENSGT01030000234625.B.c #17	ENSGT00390000012703.a #18	ENSGT00940000157391 #19	ENSGT00940000155656 #21	ENSGT00940000154790.a.a.b #22	ENSGT00940000157082 #23	ENSGT00940000156874 #24	ENSGT00730000111187.b #25	ENSGT00940000156560 #26	ENSGT00940000153881.a #27	ENSGT00940000158456 #28	ENSGT00940000153433.B.a.b #29	ENSGT00410000025698.a #30	ENSGT00390000011270 #31	ENSGT00390000001960 #32	ENSGT00940000157390 #33	ENSGT00940000159171 #35	ENSGT00940000159967 #36	ENSGT00900000143215	ENSGT00550000074815 #37
Mus	ANCESTRAL SPECIES	5	ENSGT00390000011724 #7	ENSGT00530000064210 #8	ENSGT01030000234620.a.b.b.b #9	ENSGT00390000017528 #10	ENSGT00940000162504 #11	ENSGT00940000156376 #12	ENSGT00940000162770	ENSGT00940000161120 #13	ENSGT00390000001374 #14	ENSGT00720000108846.a #15	ENSGT00390000018676	ENSGT01030000234625.B.c #17	ENSGT00390000012703.a #18	ENSGT00940000157391 #19	ENSGT00940000155656 #21	ENSGT00940000154790.a.a.b #22	ENSGT00940000157082 #23	ENSGT00940000156874 #24	ENSGT00730000111187.b #25	ENSGT00940000156560 #26	ENSGT00940000153881.a #27	ENSGT00940000158456 #28	ENSGT00940000153433.B.a.b #29	ENSGT00410000025698.a #30	ENSGT00390000011270 #31	ENSGT00390000001960 #32	ENSGT00940000157390 #33	ENSGT00940000159171 #35	ENSGT00940000159967 #36	ENSGT00900000143215	ENSGT00550000074815 #37
Mus_A	ANCESTRAL SPECIES	5	ENSGT00390000011724 #7	ENSGT00530000064210 #8	ENSGT01030000234620.a.b.b.b #9	ENSGT00390000017528 #10	ENSGT00940000162504 #11	ENSGT00940000156376 #12	ENSGT00940000162770	ENSGT00940000161120 #13	ENSGT00390000001374 #14	ENSGT00720000108846.a #15	ENSGT00390000018676	ENSGT01030000234625.B.c #17	ENSGT00390000012703.a #18	ENSGT00940000157391 #19	ENSGT00940000155656 #21	ENSGT00940000154790.a.a.b #22	ENSGT00940000157082 #23	ENSGT00940000156874 #24	ENSGT00730000111187.b #25	ENSGT00940000156560 #26	ENSGT00940000153881.a #27	ENSGT00940000158456 #28	ENSGT00940000153433.B.a.b #29	ENSGT00410000025698.a #30	ENSGT00390000011270 #31	ENSGT00390000001960 #32	ENSGT00940000157390 #33	ENSGT00940000159171 #35	ENSGT00940000159967 #36	ENSGT00900000143215	ENSGT00550000074815 #37
Mus_B	ANCESTRAL SPECIES	7	ENSGT00390000011724 #7	ENSGT00530000064210 #8	ENSGT01030000234620.a.b.b.b #9	ENSGT00390000017528 #10	ENSGT00940000162504 #11	ENSGT00940000156376 #12	ENSGT00940000162770	ENSGT00940000161120 #13	ENSGT00390000001374 #14	ENSGT00720000108846.a #15	ENSGT00390000018676	ENSGT01030000234625.B.c #17	ENSGT00390000012703.a #18	ENSGT00940000157391 #19	ENSGT00940000155656 #21	ENSGT00940000154790.a.a.b #22	ENSGT00940000157082 #23	ENSGT00940000156874 #24	ENSGT00730000111187.b #25	ENSGT00940000156560 #26	ENSGT00940000153881.a #27	ENSGT00940000158456 #28	ENSGT00940000153433.B.a.b #29	ENSGT00410000025698.a #30	ENSGT00390000011270 #31	ENSGT00390000001960 #32	ENSGT00940000157390 #33	ENSGT00940000159171 #35	ENSGT00940000159967 #36	ENSGT00900000143215	ENSGT00550000074815 #37
Mus_C	ANCESTRAL SPECIES	1	ENSGT00390000011724 #7	ENSGT00530000064210 #8	ENSGT01030000234620.a.b.b.b #9	ENSGT00390000017528 #10	ENSGT00940000162504 #11	ENSGT00940000156376 #12	ENSGT00940000162770	ENSGT00940000161120 #13	ENSGT00390000001374 #14	ENSGT00720000108846.a #15	ENSGT00390000018676	ENSGT01030000234625.B.c #17	ENSGT00390000012703.a #18	ENSGT00940000157391 #19	ENSGT00940000155656 #21	ENSGT00940000154790.a.a.b #22	ENSGT00940000157082 #23	ENSGT00940000156874 #24	ENSGT00730000111187.b #25	ENSGT00940000156560 #26	ENSGT00940000153881.a #27	ENSGT00940000158456 #28	ENSGT00940000153433.B.a.b #29	ENSGT00410000025698.a #30	ENSGT00390000011270 #31	ENSGT00940000154443.b.a	ENSGT00390000001960 #32	ENSGT00940000157390 #33	ENSGT00940000159171 #35	ENSGT00940000159967 #36	ENSGT00900000143215
spretus	MODERN SPECIES		Ints7 (MGP_SPRETEiJ_G0015853) #7	Dtl (MGP_SPRETEiJ_G0015852) #8	Ppp2r5a (MGP_SPRETEiJ_G0015851) #9	Pacc1 (MGP_SPRETEiJ_G0015850) #10	Nenf (MGP_SPRETEiJ_G0015849) #11	Atf3 (MGP_SPRETEiJ_G0015848) #12	Garin4 (MGP_SPRETEiJ_G0015847)	Batf3 (MGP_SPRETEiJ_G0015846) #13	Nsl1 (MGP_SPRETEiJ_G0015845) #14	Tatdn3 (MGP_SPRETEiJ_G0015844) #15	Spata45 (MGP_SPRETEiJ_G0015843)	Flvcr1 (MGP_SPRETEiJ_G0015842) #17	Vash2 (MGP_SPRETEiJ_G0015841) #18	Angel2 (MGP_SPRETEiJ_G0015840) #19	Rps6kc1 (MGP_SPRETEiJ_G0015839) #21	Prox1 (MGP_SPRETEiJ_G0015838) #22	Ighv2-7 (MGP_SPRETEiJ_G0000034)	Smyd2 (MGP_SPRETEiJ_G0015837) #23	Ptpn14 (MGP_SPRETEiJ_G0015836) #24	Cenpf (MGP_SPRETEiJ_G0015835) #25	Kcnk2 (MGP_SPRETEiJ_G0015834) #26	Kctd3 (MGP_SPRETEiJ_G0015833) #27	MGP_SPRETEiJ_G0015832	Esrrg (MGP_SPRETEiJ_G0015831) #29	Gpatch2 (MGP_SPRETEiJ_G0015830) #30	Spata17 (MGP_SPRETEiJ_G0015829) #31	D1Pas1 (MGP_SPRETEiJ_G0015828)	Rrp15 (MGP_SPRETEiJ_G0015827) #32	Tgfb2 (MGP_SPRETEiJ_G0015826) #33	Lyplal1 (MGP_SPRETEiJ_G0015825) #35	Slc30a10 (MGP_SPRETEiJ_G0015824) #36
Steppe mouse	MODERN SPECIES	3418	Dtl (ENSMSIG00000029283) #8	Ppp2r5a (ENSMSIG00000029289) #9	Pacc1 (ENSMSIG00000029302) #10	Nenf (ENSMSIG00000029311) #11	ENSMSIG00000029314	ENSMSIG00000029315	Atf3 (ENSMSIG00000029326) #12	Garin4 (ENSMSIG00000029331)	ENSMSIG00000029332 #14	ENSMSIG00000029353 #15	Spata45 (ENSMSIG00000029382)	Flvcr1 (ENSMSIG00000029386) #17	Vash2 (ENSMSIG00000029392) #18	Angel2 (ENSMSIG00000029399) #19	Rps6kc1 (ENSMSIG00000029410) #21	Prox1 (ENSMSIG00000029428) #22	Smyd2 (ENSMSIG00000029433) #23	Ptpn14 (ENSMSIG00000029436) #24	Cenpf (ENSMSIG00000029453) #25	Kcnk2 (ENSMSIG00000029469) #26	Kctd3 (ENSMSIG00000029533) #27	Ush2a (ENSMSIG00000029542) #28	Esrrg (ENSMSIG00000029593) #29	ENSMSIG00000029619	Gpatch2 (ENSMSIG00000029622) #30	Spata17 (ENSMSIG00000029638) #31
Mouse	MODERN SPECIES		Ints7 (ENSMUSG00000037461) #7	Dtl (ENSMUSG00000037474) #8	Ppp2r5a (ENSMUSG00000026626) #9	Pacc1 (ENSMUSG00000026627) #10	Nenf (ENSMUSG00000037499) #11	Atf3 (ENSMUSG00000026628) #12	Garin4 (ENSMUSG00000091017)	Batf3 (ENSMUSG00000026630) #13	Nsl1 (ENSMUSG00000062510) #14	Tatdn3 (ENSMUSG00000026632) #15	Spata45 (ENSMUSG00000057072)	Flvcr1 (ENSMUSG00000066595) #17	Vash2 (ENSMUSG00000037568) #18	Angel2 (ENSMUSG00000026634) #19	Rps6kc1 (ENSMUSG00000089872) #21	Prox1 (ENSMUSG00000010175) #22	Smyd2 (ENSMUSG00000026603) #23	Ptpn14 (ENSMUSG00000026604) #24	Cenpf (ENSMUSG00000026605) #25	Kcnk2 (ENSMUSG00000037624) #26	Kctd3 (ENSMUSG00000026608) #27	Ush2a (ENSMUSG00000026609) #28	Esrrg (ENSMUSG00000026610) #29	Gpatch2 (ENSMUSG00000039210) #30	Spata17 (ENSMUSG00000026611) #31	D1Pas1 (ENSMUSG00000039224)	Rrp15 (ENSMUSG00000001305) #32	Tgfb2 (ENSMUSG00000039239) #33	Lyplal1 (ENSMUSG00000039246) #35	Slc30a10 (ENSMUSG00000026614) #36	Eprs (ENSMUSG00000026615) #37
Ryukyu mouse	MODERN SPECIES		Ints7 (MGP_CAROLIEiJ_G0015053) #7	Dtl (MGP_CAROLIEiJ_G0015052) #8	Ppp2r5a (MGP_CAROLIEiJ_G0015051) #9	Pacc1 (MGP_CAROLIEiJ_G0015050) #10	Nenf (MGP_CAROLIEiJ_G0015049) #11	Atf3 (MGP_CAROLIEiJ_G0015048) #12	Garin4 (MGP_CAROLIEiJ_G0015047)	Batf3 (MGP_CAROLIEiJ_G0015046) #13	Nsl1 (MGP_CAROLIEiJ_G0015045) #14	Tatdn3 (MGP_CAROLIEiJ_G0015044) #15	Spata45 (MGP_CAROLIEiJ_G0015043)	Flvcr1 (MGP_CAROLIEiJ_G0015042) #17	Vash2 (MGP_CAROLIEiJ_G0015041) #18	Angel2 (MGP_CAROLIEiJ_G0015040) #19	Rps6kc1 (MGP_CAROLIEiJ_G0015039) #21	Prox1 (MGP_CAROLIEiJ_G0015038) #22	Smyd2 (MGP_CAROLIEiJ_G0015037) #23	Ptpn14 (MGP_CAROLIEiJ_G0015036) #24	Cenpf (MGP_CAROLIEiJ_G0015035) #25	Kcnk2 (MGP_CAROLIEiJ_G0015034) #26	Kctd3 (MGP_CAROLIEiJ_G0015033) #27	MGP_CAROLIEiJ_G0015032	Esrrg (MGP_CAROLIEiJ_G0015031) #29	Gpatch2 (MGP_CAROLIEiJ_G0015030) #30	Spata17 (MGP_CAROLIEiJ_G0015029) #31	D1Pas1 (MGP_CAROLIEiJ_G0015028)	Rrp15 (MGP_CAROLIEiJ_G0015027) #32	Tgfb2 (MGP_CAROLIEiJ_G0015026) #33	Lyplal1 (MGP_CAROLIEiJ_G0015025) #35	Slc30a10 (MGP_CAROLIEiJ_G0015024) #36	Eprs (MGP_CAROLIEiJ_G0015023) #37
Shrew mouse	MODERN SPECIES	18	Ints7 (MGP_PahariEiJ_G0028285) #7	Dtl (MGP_PahariEiJ_G0028284) #8	Ppp2r5a (MGP_PahariEiJ_G0028283) #9	Pacc1 (MGP_PahariEiJ_G0028282) #10	Nenf (MGP_PahariEiJ_G0028281) #11	Atf3 (MGP_PahariEiJ_G0028280) #12	Garin4 (MGP_PahariEiJ_G0028279)	Batf3 (MGP_PahariEiJ_G0028278) #13	Nsl1 (MGP_PahariEiJ_G0028277) #14	MGP_PahariEiJ_G0028276 #15	Spata45 (MGP_PahariEiJ_G0028275)	Flvcr1 (MGP_PahariEiJ_G0028274) #17	Vash2 (MGP_PahariEiJ_G0028273) #18	Angel2 (MGP_PahariEiJ_G0028272) #19	Rps6kc1 (MGP_PahariEiJ_G0028271) #21	Prox1 (MGP_PahariEiJ_G0028270) #22	MGP_PahariEiJ_G0028269 #23	MGP_PahariEiJ_G0028268 #24	Cenpf (MGP_PahariEiJ_G0028267) #25	Kcnk2 (MGP_PahariEiJ_G0028266) #26	Kctd3 (MGP_PahariEiJ_G0028265) #27	Ush2a (MGP_PahariEiJ_G0028264) #28	Esrrg (MGP_PahariEiJ_G0028263) #29	Gpatch2 (MGP_PahariEiJ_G0028262) #30	Spata17 (MGP_PahariEiJ_G0028261) #31	D1Pas1 (MGP_PahariEiJ_G0028260)	Rrp15 (MGP_PahariEiJ_G0028259) #32	Tgfb2 (MGP_PahariEiJ_G0028258) #33	Lyplal1 (MGP_PahariEiJ_G0028257) #35	Slc30a10 (MGP_PahariEiJ_G0028256) #36	Eprs (MGP_PahariEiJ_G0028255) #37
Rat	MODERN SPECIES	4	Dtl (ENSRNOG00000004195) #8	Ppp2r5a (ENSRNOG00000000068) #9	Pacc1 (ENSRNOG00000003915) #10	Nenf (ENSRNOG00000003833) #11	Atf3 (ENSRNOG00000003745) #12	Garin4 (ENSRNOG00000029371)	Batf3 (ENSRNOG00000003716) #13	Nsl1 (ENSRNOG00000042286) #14	Tatdn3 (ENSRNOG00000046460) #15	SPATA45 (ENSRNOG00000048659)	Flvcr1 (ENSRNOG00000049633) #17	Vash2 (ENSRNOG00000003832) #18	Angel2 (ENSRNOG00000003795) #19	LOC678708 (ENSRNOG00000071166)	Rps6kc1 (ENSRNOG00000003767) #21	Prox1 (ENSRNOG00000003694) #22	LOC498308 (ENSRNOG00000032812)	Smyd2 (ENSRNOG00000003583) #23	Ptpn14 (ENSRNOG00000003407) #24	Cenpf (ENSRNOG00000003388) #25	Kcnk2 (ENSRNOG00000002653) #26	LOC100361993 (ENSRNOG00000022144)	Kctd3 (ENSRNOG00000002627) #27	Ush2a (ENSRNOG00000003738) #28	Esrrg (ENSRNOG00000002593) #29	Gpatch2 (ENSRNOG00000002512) #30	Spata17 (ENSRNOG00000002504) #31	Ddx3y (ENSRNOG00000002501)	Rrp15 (ENSRNOG00000002450) #32	Tgfb2 (ENSRNOG00000002418) #33	Lyplal1 (ENSRNOG00000023130) #35
Upper Galilee mountains blind mole rat	MODERN SPECIES	1872	Lpgat1 (ENSNGAG00000020207)	Ints7 (ENSNGAG00000011793) #7	Dtl (ENSNGAG00000015330) #8	Ppp2r5a (ENSNGAG00000011634) #9	Pacc1 (ENSNGAG00000001036) #10	Nenf (ENSNGAG00000015999) #11	Atf3 (ENSNGAG00000017384) #12	Batf3 (ENSNGAG00000012341) #13	Nsl1 (ENSNGAG00000021030) #14	Tatdn3 (ENSNGAG00000015819) #15	Spata45 (ENSNGAG00000001409)	Flvcr1 (ENSNGAG00000009986) #17	Vash2 (ENSNGAG00000000617) #18	Angel2 (ENSNGAG00000009708) #19	Rps6kc1 (ENSNGAG00000007216) #21	Prox1 (ENSNGAG00000003426) #22	Smyd2 (ENSNGAG00000017594) #23	Ptpn14 (ENSNGAG00000000903) #24	Cenpf (ENSNGAG00000017286) #25	Kcnk2 (ENSNGAG00000015617) #26
Lesser Egyptian jerboa	MODERN SPECIES	202	Ints7 (ENSJJAG00000016411) #7	Dtl (ENSJJAG00000018467) #8	ENSJJAG00000011922	Ppp2r5a (ENSJJAG00000000086) #9	Pacc1 (ENSJJAG00000016674) #10	Nenf (ENSJJAG00000017183) #11	Atf3 (ENSJJAG00000017443) #12	Garin4 (ENSJJAG00000018541)	Batf3 (ENSJJAG00000018647) #13	Nsl1 (ENSJJAG00000018765) #14	Tatdn3 (ENSJJAG00000019566) #15	Flvcr1 (ENSJJAG00000008943) #17	Vash2 (ENSJJAG00000010725) #18	Angel2 (ENSJJAG00000011228) #19	Rps6kc1 (ENSJJAG00000012880) #21	Prox1 (ENSJJAG00000014483) #22	Smyd2 (ENSJJAG00000016418) #23	Ptpn14 (ENSJJAG00000018171) #24	ENSJJAG00000016212	Cenpf (ENSJJAG00000018391) #25	ENSJJAG00000011950
Kangaroo rat	MODERN SPECIES	345	Ints7 (ENSDORG00000004343) #7	Dtl (ENSDORG00000004346) #8	Ppp2r5a (ENSDORG00000007631) #9	Pacc1 (ENSDORG00000007633) #10	Nenf (ENSDORG00000027260) #11	Atf3 (ENSDORG00000025141) #12	Garin4 (ENSDORG00000006027)	Batf3 (ENSDORG00000025907) #13	Nsl1 (ENSDORG00000028451) #14	Tatdn3 (ENSDORG00000014148) #15	Spata45 (ENSDORG00000014481)	Flvcr1 (ENSDORG00000002942) #17	Vash2 (ENSDORG00000000751) #18	Angel2 (ENSDORG00000000752) #19	Rps6kc1 (ENSDORG00000000754) #21	Prox1 (ENSDORG00000007622) #22	ENSDORG00000026445	Smyd2 (ENSDORG00000016521) #23	ENSDORG00000016522 #24	ENSDORG00000029041 #24	Cenpf (ENSDORG00000025961) #25	ENSDORG00000024360	Kcnk2 (ENSDORG00000005481) #26	Kctd3 (ENSDORG00000014846) #27	Ush2a (ENSDORG00000014848) #28	Esrrg (ENSDORG00000005752) #29	Gpatch2 (ENSDORG00000030155) #30	Spata17 (ENSDORG00000013451) #31	Rrp15 (ENSDORG00000004058) #32	Tgfb2 (ENSDORG00000004061) #33	Lyplal1 (ENSDORG00000013506) #35
Rodentia_A	ANCESTRAL SPECIES		ENSGT00390000011724 #7	ENSGT00530000064210 #8	ENSGT01030000234620.a.b.b.b #9	ENSGT00390000017528 #10	ENSGT00940000162504 #11	ENSGT00940000156376 #12	ENSGT00940000162770	ENSGT00940000161120 #13	ENSGT00390000001374 #14	ENSGT00720000108846.a #15	ENSGT00390000018676	ENSGT01030000234625.B.c #17	ENSGT00390000012703.a #18	ENSGT00940000157391 #19	ENSGT00940000155656 #21	ENSGT00940000154790.a.a.b #22	ENSGT00940000157082 #23	ENSGT00940000156874 #24	ENSGT00730000111187.b #25	ENSGT00940000156560 #26	ENSGT00940000153881.a #27	ENSGT00940000158456 #28	ENSGT00940000153433.B.a.b #29	ENSGT00410000025698.a #30	ENSGT00390000011270 #31	ENSGT00390000001960 #32	ENSGT00940000157390 #33	ENSGT00940000159171 #35	ENSGT00940000159967 #36	ENSGT00550000074815 #37	ENSGT00940000157359
Sciuridae	ANCESTRAL SPECIES		ENSGT00390000011724 #7	ENSGT00530000064210 #8	ENSGT01030000234620.a.b.b.b #9	ENSGT00390000017528 #10	ENSGT00940000162504 #11	ENSGT00940000156376 #12	ENSGT00940000162770	ENSGT00940000161120 #13	ENSGT00390000001374 #14	ENSGT00720000108846.a #15	ENSGT00390000018676	ENSGT01030000234625.B.c #17	ENSGT00390000012703.a #18	ENSGT00940000157391 #19	ENSGT00940000155656 #21	ENSGT00940000154790.a.a.b #22	ENSGT00940000157082 #23	ENSGT00940000156874 #24	ENSGT00730000111187.b #25	ENSGT00940000156560 #26	ENSGT00940000153881.a #27	ENSGT00940000158456 #28	ENSGT00940000153433.B.a.b #29	ENSGT00940000154268.e.a	ENSGT00410000025698.a #30	ENSGT00390000011270 #31	ENSGT00390000001960 #32	ENSGT00940000157390 #33	ENSGT00940000159171 #35	ENSGT00940000159967 #36	ENSGT00550000074815 #37
Marmotini	ANCESTRAL SPECIES	21	ENSGT00390000011724 #7	ENSGT00530000064210 #8	ENSGT01030000234620.a.b.b.b #9	ENSGT00390000017528 #10	ENSGT00940000162504 #11	ENSGT00940000156376 #12	ENSGT00940000162770	ENSGT00940000161120 #13	ENSGT00390000001374 #14	ENSGT00720000108846.a #15	ENSGT00390000018676	ENSGT01030000234625.B.c #17	ENSGT00390000012703.a #18	ENSGT00940000157391 #19	ENSGT00940000155656 #21	ENSGT00940000154790.a.a.b #22	ENSGT00940000157082 #23	ENSGT00940000156874 #24	ENSGT00730000111187.b #25	ENSGT00900000143015.b	ENSGT00940000156560 #26	ENSGT00940000153881.a #27	ENSGT00940000158456 #28	ENSGT00940000153433.B.a.b #29	ENSGT00940000154268.e.a	ENSGT00410000025698.a #30	ENSGT00390000011270 #31	ENSGT00390000001960 #32	ENSGT00940000157390 #33	ENSGT00940000159171 #35	ENSGT00940000159967 #36
Marmotini_b	ANCESTRAL SPECIES	160																ENSGT00940000154790.a.a.b #22	ENSGT00940000157082 #23	ENSGT00940000156874 #24	ENSGT00730000111187.b #25	ENSGT00900000143015.b	ENSGT00940000156560 #26	ENSGT00940000153881.a #27	ENSGT00940000158456 #28	ENSGT00940000153433.B.a.b #29	ENSGT00410000025698.a #30	ENSGT00390000011270 #31	ENSGT00390000001960 #32	ENSGT00940000157390 #33	ENSGT00940000159171 #35	ENSGT00940000159967 #36	ENSGT00550000074815 #37
Arctic ground squirrel	MODERN SPECIES	710																PROX1 (ENSUPAG00010009353) #22	SMYD2 (ENSUPAG00010009330) #23	ENSUPAG00010009155 #24
Squirrel	MODERN SPECIES	228																PROX1 (ENSSTOG00000026238) #22	SMYD2 (ENSSTOG00000008142) #23	PTPN14 (ENSSTOG00000024270) #24	CENPF (ENSSTOG00000034538) #25	KCNK2 (ENSSTOG00000010156) #26	KCTD3 (ENSSTOG00000005730) #27	USH2A (ENSSTOG00000008983) #28	ESRRG (ENSSTOG00000009493) #29	GPATCH2 (ENSSTOG00000024959) #30	ENSSTOG00000001331	RRP15 (ENSSTOG00000001244) #32	TGFB2 (ENSSTOG00000001250) #33
Alpin marmot	MODERN SPECIES	12	DTL (ENSMMMG00000000544) #8	PPP2R5A (ENSMMMG00000000523) #9	PACC1 (ENSMMMG00000000497) #10	ENSMMMG00000000478	ATF3 (ENSMMMG00000000462) #12	ENSMMMG00000000435	BATF3 (ENSMMMG00000000419) #13	NSL1 (ENSMMMG00000000394) #14	TATDN3 (ENSMMMG00000000340) #15	ENSMMMG00000000314	FLVCR1 (ENSMMMG00000000275) #17	VASH2 (ENSMMMG00000000245) #18	ANGEL2 (ENSMMMG00000000181) #19	ENSMMMG00000000164	RPS6KC1 (ENSMMMG00000000125) #21	PROX1 (ENSMMMG00000024214) #22	ENSMMMG00000024213 #23	PTPN14 (ENSMMMG00000024212) #24	CENPF (ENSMMMG00000024211) #25	ENSMMMG00000024210	KCNK2 (ENSMMMG00000024209) #26	KCTD3 (ENSMMMG00000024208) #27	USH2A (ENSMMMG00000024206) #28	ESRRG (ENSMMMG00000024205) #29	ENSMMMG00000024203	GPATCH2 (ENSMMMG00000024202) #30	SPATA17 (ENSMMMG00000024201) #31	RRP15 (ENSMMMG00000024199) #32	TGFB2 (ENSMMMG00000024197) #33	LYPLAL1 (ENSMMMG00000024196) #35	SLC30A10 (ENSMMMG00000024195) #36
Eurasian red squirrel	MODERN SPECIES	3	PPP2R5A (ENSSVLG00005017066) #9	PACC1 (ENSSVLG00005016932) #10	NENF (ENSSVLG00005016898) #11	ENSSVLG00005016732 #12	GARIN4 (ENSSVLG00005016703)	BATF3 (ENSSVLG00005016663) #13	NSL1 (ENSSVLG00005016609) #14	ENSSVLG00005016573	TATDN3 (ENSSVLG00005016168) #15	SPATA45 (ENSSVLG00005016084)	ENSSVLG00005016057	FLVCR1 (ENSSVLG00005015972) #17	VASH2 (ENSSVLG00005015835) #18	ANGEL2 (ENSSVLG00005015787) #19	RPS6KC1 (ENSSVLG00005015251) #21	PROX1 (ENSSVLG00005015139) #22	SMYD2 (ENSSVLG00005014781) #23	PTPN14 (ENSSVLG00005014690) #24	CENPF (ENSSVLG00005014494) #25	ENSSVLG00005014446	KCNK2 (ENSSVLG00005014267) #26	KCTD3 (ENSSVLG00005014023) #27	ENSSVLG00005021878	USH2A (ENSSVLG00005020592) #28	ESRRG (ENSSVLG00005020291) #29	ENSSVLG00005020247	GPATCH2 (ENSSVLG00005020165) #30	SPATA17 (ENSSVLG00005020029) #31	ENSSVLG00005019966	RRP15 (ENSSVLG00005019888) #32	TGFB2 (ENSSVLG00005019711) #33
Hystricomorpha	ANCESTRAL SPECIES	49	ENSGT00390000011724 #7	ENSGT00530000064210 #8	ENSGT01030000234620.a.b.b.b #9	ENSGT00390000017528 #10	ENSGT00940000162504 #11	ENSGT00940000156376 #12	ENSGT00940000162770	ENSGT00940000161120 #13	ENSGT00390000001374.d #14	ENSGT00720000108846.a #15	ENSGT00390000018676	ENSGT01030000234625.B.c #17	ENSGT00390000012703.a #18	ENSGT00940000157391 #19	ENSGT00940000155656 #21	ENSGT00940000154790.a.a.b #22	ENSGT00940000157082 #23	ENSGT00940000156874 #24	ENSGT00730000111187.b #25	ENSGT00940000156560 #26	ENSGT00940000153881.a #27	ENSGT00940000158456 #28	ENSGT00940000153433.B.a.b #29	ENSGT00410000025698.a #30	ENSGT00390000011270 #31	ENSGT00390000001960 #32	ENSGT00940000157390 #33	ENSGT00940000159171 #35	ENSGT00940000159967 #36	ENSGT00550000074815 #37	ENSGT00940000157359
Hystricomorpha_a	ANCESTRAL SPECIES	13	ENSGT00390000011724 #7	ENSGT00530000064210 #8	ENSGT01030000234620.a.b.b.b #9	ENSGT00390000017528 #10	ENSGT00940000162504 #11	ENSGT00940000156376 #12	ENSGT00940000162770	ENSGT00940000161120 #13	ENSGT00390000001374.d #14	ENSGT00720000108846.a #15	ENSGT00390000018676	ENSGT01030000234625.B.c #17	ENSGT00390000012703.a #18	ENSGT00940000157391 #19	ENSGT00940000155656 #21	ENSGT00940000154790.a.a.b #22	ENSGT00940000157082 #23	ENSGT00940000156874 #24	ENSGT00730000111187.b #25	ENSGT00940000156560 #26	ENSGT00940000153881.a #27	ENSGT00940000158456 #28	ENSGT00940000153433.B.a.b #29	ENSGT00410000025698.a #30	ENSGT00390000011270 #31	ENSGT00390000001960 #32	ENSGT00940000157390 #33	ENSGT00940000159171 #35	ENSGT00940000159967 #36	ENSGT00550000074815 #37	ENSGT00940000157359
Hystricomorpha_b	ANCESTRAL SPECIES	4	ENSGT00390000011724 #7	ENSGT00530000064210 #8	ENSGT01030000234620.a.b.b.b #9	ENSGT00390000017528 #10	ENSGT00940000162504 #11	ENSGT00940000156376 #12	ENSGT00940000162770	ENSGT00940000161120 #13	ENSGT00390000001374.d #14	ENSGT00720000108846.a #15	ENSGT00390000018676	ENSGT01030000234625.B.c #17	ENSGT00390000012703.a #18	ENSGT00940000157391 #19	ENSGT00940000155656 #21	ENSGT00940000154790.a.a.b #22	ENSGT00940000157082 #23	ENSGT00940000156874 #24	ENSGT00730000111187.b #25	ENSGT00940000156560 #26	ENSGT00940000153881.a #27	ENSGT00940000158456 #28	ENSGT00940000153433.B.a.b #29	ENSGT00410000025698.a #30	ENSGT00390000011270 #31	ENSGT00390000001960 #32	ENSGT00940000157390 #33	ENSGT00940000159171 #35	ENSGT00940000159967 #36	ENSGT00550000074815 #37	ENSGT00940000157359
Long-tailed chinchilla	MODERN SPECIES	113	NEK2 (ENSCLAG00000010880)	LPGAT1 (ENSCLAG00000011509)	INTS7 (ENSCLAG00000011748) #7	DTL (ENSCLAG00000014236) #8	PPP2R5A (ENSCLAG00000012816) #9	PACC1 (ENSCLAG00000009570) #10	ENSCLAG00000007912	ATF3 (ENSCLAG00000013767) #12	NSL1 (ENSCLAG00000015217) #14	TATDN3 (ENSCLAG00000008909) #15	SPATA45 (ENSCLAG00000008856)	FLVCR1 (ENSCLAG00000012241) #17	VASH2 (ENSCLAG00000008864) #18	ANGEL2 (ENSCLAG00000007133) #19	RPS6KC1 (ENSCLAG00000008718) #21	PROX1 (ENSCLAG00000009881) #22	SMYD2 (ENSCLAG00000010831) #23	PTPN14 (ENSCLAG00000007231) #24	CENPF (ENSCLAG00000010635) #25	KCNK2 (ENSCLAG00000015253) #26	KCTD3 (ENSCLAG00000008084) #27	USH2A (ENSCLAG00000009662) #28	ESRRG (ENSCLAG00000006694) #29	GPATCH2 (ENSCLAG00000009274) #30	SPATA17 (ENSCLAG00000006629) #31	RRP15 (ENSCLAG00000008564) #32	TGFB2 (ENSCLAG00000007436) #33
Degu	MODERN SPECIES	58	DTL (ENSODEG00000016385) #8	PPP2R5A (ENSODEG00000014272) #9	PACC1 (ENSODEG00000013328) #10	NENF (ENSODEG00000016432) #11	ATF3 (ENSODEG00000013598) #12	GARIN4 (ENSODEG00000013574)	ENSODEG00000013720 #13	NSL1 (ENSODEG00000014696) #14	TATDN3 (ENSODEG00000013799) #15	SPATA45 (ENSODEG00000014271)	FLVCR1 (ENSODEG00000013456) #17	VASH2 (ENSODEG00000014165) #18	ANGEL2 (ENSODEG00000014913) #19	ENSODEG00000013498	RPS6KC1 (ENSODEG00000014689) #21	PROX1 (ENSODEG00000014117) #22	SMYD2 (ENSODEG00000014303) #23	PTPN14 (ENSODEG00000015282) #24	CENPF (ENSODEG00000013904) #25	KCNK2 (ENSODEG00000015231) #26	KCTD3 (ENSODEG00000014449) #27	USH2A (ENSODEG00000014824) #28	ESRRG (ENSODEG00000013965) #29	GPATCH2 (ENSODEG00000014927) #30	SPATA17 (ENSODEG00000016248) #31	RRP15 (ENSODEG00000013879) #32	TGFB2 (ENSODEG00000015102) #33	ENSODEG00000013760	ENSODEG00000015201	LYPLAL1 (ENSODEG00000014681) #35	SLC30A10 (ENSODEG00000014204) #36
Guinea pig	MODERN SPECIES	13	INTS7 (ENSCPOG00000014960) #7	DTL (ENSCPOG00000014965) #8	PPP2R5A (ENSCPOG00000040049) #9	PACC1 (ENSCPOG00000009329) #10	ENSCPOG00000033847	ATF3 (ENSCPOG00000034947) #12	BATF3 (ENSCPOG00000032323) #13	NSL1 (ENSCPOG00000002451) #14	TATDN3 (ENSCPOG00000002454) #15	SPATA45 (ENSCPOG00000002457)	FLVCR1 (ENSCPOG00000011300) #17	ENSCPOG00000023888	VASH2 (ENSCPOG00000003871) #18	ANGEL2 (ENSCPOG00000003875) #19	RPS6KC1 (ENSCPOG00000009490) #21	PROX1 (ENSCPOG00000011987) #22	SMYD2 (ENSCPOG00000024400) #23	PTPN14 (ENSCPOG00000013729) #24	CENPF (ENSCPOG00000014374) #25	KCNK2 (ENSCPOG00000014507) #26	KCTD3 (ENSCPOG00000007778) #27	USH2A (ENSCPOG00000007786) #28	ESRRG (ENSCPOG00000036099) #29	GPATCH2 (ENSCPOG00000003966) #30	SPATA17 (ENSCPOG00000003975) #31	RRP15 (ENSCPOG00000007644) #32	TGFB2 (ENSCPOG00000007647) #33	LYPLAL1 (ENSCPOG00000010837) #35	SLC30A10 (ENSCPOG00000003584) #36	EPRS1 (ENSCPOG00000003586) #37	BPNT1 (ENSCPOG00000037184)
Naked mole-rat female	MODERN SPECIES	16	ENSHGLG00000032112	ENSHGLG00000005464	ENSHGLG00000037874	ENSHGLG00000028910	NEK2 (ENSHGLG00000004280)	LPGAT1 (ENSHGLG00000008115)	INTS7 (ENSHGLG00000005372) #7	DTL (ENSHGLG00000006063) #8	ENSHGLG00000003379 #9	PACC1 (ENSHGLG00000004632) #10	NENF (ENSHGLG00000005390) #11	ENSHGLG00000006406 #12	ENSHGLG00000007863 #18	ANGEL2 (ENSHGLG00000009577) #19	ENSHGLG00000011298 #21	PROX1 (ENSHGLG00000004005) #22	SMYD2 (ENSHGLG00000005014) #23	PTPN14 (ENSHGLG00000006819) #24	CENPF (ENSHGLG00000012286) #25	ENSHGLG00000043491	ENSHGLG00000050259	KCNK2 (ENSHGLG00000014892) #26	KCTD3 (ENSHGLG00000003630) #27	ESRRG (ENSHGLG00000009345) #29	GPATCH2 (ENSHGLG00000019513) #30	SPATA17 (ENSHGLG00000037088) #31	RRP15 (ENSHGLG00000002183) #32	TGFB2 (ENSHGLG00000002933) #33	LYPLAL1 (ENSHGLG00000035753) #35	ENSHGLG00000046215 #36	EPRS1 (ENSHGLG00000001974) #37
Laurasiatheria	ANCESTRAL SPECIES	25	ENSGT00390000011724 #7	ENSGT00530000064210 #8	ENSGT01030000234620.a.b.b.b #9	ENSGT00390000017528 #10	ENSGT00940000162504 #11	ENSGT00940000156376 #12	ENSGT00940000162770	ENSGT00940000161120 #13	ENSGT00390000001374 #14	ENSGT00720000108846.a #15	ENSGT00390000018676	ENSGT01030000234625.B.c #17	ENSGT00390000012703.a #18	ENSGT00940000157391 #19	ENSGT00940000155656 #21	ENSGT00940000154790.a.a.b #22	ENSGT00940000157082 #23	ENSGT00940000156874 #24	ENSGT00730000111187.b #25	ENSGT00940000156560 #26
Eulipotyphla	ANCESTRAL SPECIES																	ENSGT00940000154790.a.a.b #22
Common shrew	MODERN SPECIES	1366																PROX1 (ENSSARG00000012636) #22
Laurasiatheria_a	ANCESTRAL SPECIES		ENSGT00390000011724 #7	ENSGT00530000064210 #8	ENSGT01030000234620.a.b.b.b #9	ENSGT00390000017528 #10	ENSGT00940000162504 #11	ENSGT00940000156376 #12	ENSGT00940000162770	ENSGT00940000161120 #13	ENSGT00390000001374 #14	ENSGT00720000108846.a #15	ENSGT00390000018676	ENSGT01030000234625.B.c #17	ENSGT00390000012703.a #18	ENSGT00940000157391 #19	ENSGT00940000155656 #21	ENSGT00940000154790.a.a.b #22	ENSGT00940000157082 #23	ENSGT00940000156874 #24	ENSGT00730000111187.b #25	ENSGT00940000156560 #26	ENSGT01030000234606.b	ENSGT00390000010743.a	ENSGT00940000156236	ENSGT00390000012568	ENSGT00730000111014	ENSGT00990000204652	ENSGT00530000063751.a	ENSGT00940000154614	ENSGT00940000155635	ENSGT00390000001254	ENSGT00530000063646.a
Artiodactyla	ANCESTRAL SPECIES		ENSGT00390000011724 #7	ENSGT00530000064210 #8	ENSGT01030000234620.a.b.b.b #9	ENSGT00390000017528 #10	ENSGT00940000162504 #11	ENSGT00940000156376 #12	ENSGT00940000162770	ENSGT00940000161120 #13	ENSGT00390000001374 #14	ENSGT00720000108846.a #15	ENSGT00390000018676	ENSGT01030000234625.B.c #17	ENSGT00390000012703.a #18	ENSGT00940000157391 #19	ENSGT00940000155656 #21	ENSGT00940000154790.a.a.b #22	ENSGT00940000157082 #23	ENSGT00940000156874 #24	ENSGT00730000111187.b #25	ENSGT00940000156560 #26	ENSGT01030000234606.b	ENSGT00390000010743.a	ENSGT00940000156236	ENSGT00390000012568	ENSGT00730000111014	ENSGT00990000204652	ENSGT00530000063751.a	ENSGT00940000154614	ENSGT00940000155635	ENSGT00390000001254	ENSGT00530000063646.a
Suina	ANCESTRAL SPECIES	15	ENSGT00390000011724 #7	ENSGT00530000064210 #8	ENSGT01030000234620.a.b.b.b #9	ENSGT00390000017528 #10	ENSGT00940000162504 #11	ENSGT00940000156376 #12	ENSGT00940000162770	ENSGT00940000161120 #13	ENSGT00390000001374 #14	ENSGT00720000108846.a #15	ENSGT00390000018676	ENSGT01030000234625.B.c #17	ENSGT00390000012703.a #18	ENSGT00940000157391 #19	ENSGT00940000155656 #21	ENSGT00940000154790.a.a.b #22	ENSGT00940000157082 #23	ENSGT00940000156874 #24	ENSGT00730000111187.b #25	ENSGT00940000156560 #26	ENSGT01030000234606.b	ENSGT00390000010743.a	ENSGT00940000156236	ENSGT00390000012568	ENSGT00730000111014	ENSGT00530000063751.a	ENSGT00940000154614	ENSGT00950000185732	ENSGT00940000155635	ENSGT00390000001254	ENSGT00530000063646.a
Pig	MODERN SPECIES	17	ENSSSCG00000045296	PPP2R5A (ENSSSCG00000015599) #9	NENF (ENSSSCG00000038614) #11	ENSSSCG00000045561	PACC1 (ENSSSCG00000015598) #10	ATF3 (ENSSSCG00000015595) #12	ENSSSCG00000059329	BATF3 (ENSSSCG00000026587) #13	NSL1 (ENSSSCG00000015593) #14	TATDN3 (ENSSSCG00000015592) #15	SPATA45 (ENSSSCG00000015591)	FLVCR1 (ENSSSCG00000015590) #17	VASH2 (ENSSSCG00000015589) #18	ANGEL2 (ENSSSCG00000015588) #19	RPS6KC1 (ENSSSCG00000015586) #21	PROX1 (ENSSSCG00000015584) #22	SMYD2 (ENSSSCG00000015583) #23	PTPN14 (ENSSSCG00000015582) #24	CENPF (ENSSSCG00000015581) #25	KCNK2 (ENSSSCG00000023451) #26	PLA2G4A (ENSSSCG00000023351)	PTGS2 (ENSSSCG00000015579)	ENSSSCG00000039898	PDC (ENSSSCG00000015578)	ODR4 (ENSSSCG00000015577)	TPR (ENSSSCG00000015576)	ENSSSCG00000029449	ENSSSCG00000045604	ENSSSCG00000050098	HMCN1 (ENSSSCG00000035595)	ENSSSCG00000028670
Chacoan peccary	MODERN SPECIES	102	INTS7 (ENSCWAG00000008597) #7	DTL (ENSCWAG00000008314) #8	PPP2R5A (ENSCWAG00000008090) #9	PACC1 (ENSCWAG00000007977) #10	NENF (ENSCWAG00000007956) #11	ATF3 (ENSCWAG00000007808) #12	ENSCWAG00000007772	BATF3 (ENSCWAG00000007743) #13	NSL1 (ENSCWAG00000021373) #14	TATDN3 (ENSCWAG00000021346) #15	SPATA45 (ENSCWAG00000021330)	FLVCR1 (ENSCWAG00000021319) #17	VASH2 (ENSCWAG00000021305) #18	ANGEL2 (ENSCWAG00000021291) #19	RPS6KC1 (ENSCWAG00000021246) #21	PROX1 (ENSCWAG00000021228) #22	SMYD2 (ENSCWAG00000021219) #23	PTPN14 (ENSCWAG00000021202) #24	CENPF (ENSCWAG00000021183) #25	KCNK2 (ENSCWAG00000021158) #26	PLA2G4A (ENSCWAG00000021126)	PTGS2 (ENSCWAG00000021110)	PDC (ENSCWAG00000021098)	ODR4 (ENSCWAG00000021064)	TPR (ENSCWAG00000021028)	ENSCWAG00000021006	HMCN1 (ENSCWAG00000020583)	ENSCWAG00000020542	IVNS1ABP (ENSCWAG00000020529)	SWT1 (ENSCWAG00000020520)	TRMT1L (ENSCWAG00000020507)
Artiodactyla_a	ANCESTRAL SPECIES		ENSGT00390000011724 #7	ENSGT00530000064210 #8	ENSGT01030000234620.a.b.b.b #9	ENSGT00390000017528 #10	ENSGT00940000162504 #11	ENSGT00940000156376 #12	ENSGT00940000162770	ENSGT00940000161120 #13	ENSGT00390000001374 #14	ENSGT00720000108846.a #15	ENSGT00390000018676	ENSGT01030000234625.B.c #17	ENSGT00390000012703.a #18	ENSGT00940000157391 #19	ENSGT00940000155656 #21	ENSGT00940000154790.a.a.b #22	ENSGT00940000157082 #23	ENSGT00940000156874 #24	ENSGT00730000111187.b #25	ENSGT00940000156560 #26	ENSGT01030000234606.b	ENSGT00390000010743.a	ENSGT00940000156236	ENSGT00390000012568	ENSGT00730000111014	ENSGT00990000204652	ENSGT00530000063751.a	ENSGT00940000154614	ENSGT00940000155635	ENSGT00390000001254	ENSGT00530000063646.a
Artiodactyla_b	ANCESTRAL SPECIES		ENSGT00390000011724 #7	ENSGT00530000064210 #8	ENSGT01030000234620.a.b.b.b #9	ENSGT00390000017528 #10	ENSGT00940000162504 #11	ENSGT00940000156376 #12	ENSGT00940000162770	ENSGT00940000161120 #13	ENSGT00390000001374 #14	ENSGT00720000108846.a #15	ENSGT00390000018676	ENSGT01030000234625.B.c #17	ENSGT00390000012703.a #18	ENSGT00940000157391 #19	ENSGT00940000155656 #21	ENSGT00940000154790.a.a.b #22	ENSGT00940000157082 #23	ENSGT00940000156874 #24	ENSGT00730000111187.b #25	ENSGT00940000156560 #26	ENSGT01030000234606.b	ENSGT00390000010743.a	ENSGT00940000156236	ENSGT00390000012568	ENSGT00730000111014	ENSGT00990000204652	ENSGT00530000063751.a	ENSGT00940000154614	ENSGT00940000155635	ENSGT00390000001254	ENSGT00530000063646.a
Pecora	ANCESTRAL SPECIES	33	ENSGT00390000011724 #7	ENSGT00530000064210 #8	ENSGT01030000234620.a.b.b.b #9	ENSGT00390000017528 #10	ENSGT00940000162504 #11	ENSGT00940000156376 #12	ENSGT00940000162770	ENSGT00940000161120 #13	ENSGT00390000001374 #14	ENSGT00720000108846.a #15	ENSGT00390000018676	ENSGT01030000234625.B.c #17	ENSGT00390000012703.a #18	ENSGT00940000157391 #19	ENSGT00940000155656 #21	ENSGT00940000154790.a.a.b #22	ENSGT00940000157082 #23	ENSGT00940000156874 #24	ENSGT00730000111187.b #25	ENSGT00940000156560 #26	ENSGT01030000234606.b	ENSGT00390000010743.a	ENSGT00940000156236	ENSGT00390000012568	ENSGT00730000111014	ENSGT00990000204652	ENSGT00530000063751.a	ENSGT00970000194703	ENSGT00940000154614	ENSGT00940000155635	ENSGT00390000001254
Yarkand deer	MODERN SPECIES	5	PPP2R5A (ENSCHYG00000014835) #9	ENSCHYG00000014785	PACC1 (ENSCHYG00000014712) #10	NENF (ENSCHYG00000014643) #11	ATF3 (ENSCHYG00000014511) #12	GARIN4 (ENSCHYG00000014489)	BATF3 (ENSCHYG00000014453) #13	NSL1 (ENSCHYG00000014242) #14	TATDN3 (ENSCHYG00000013409) #15	SPATA45 (ENSCHYG00000013280)	FLVCR1 (ENSCHYG00000013138) #17	ENSCHYG00000013113	VASH2 (ENSCHYG00000012969) #18	ANGEL2 (ENSCHYG00000012880) #19	RPS6KC1 (ENSCHYG00000012272) #21	PROX1 (ENSCHYG00000012173) #22	SMYD2 (ENSCHYG00000012013) #23	PTPN14 (ENSCHYG00000011756) #24	CENPF (ENSCHYG00000011625) #25	KCNK2 (ENSCHYG00000011476) #26	PLA2G4A (ENSCHYG00000011189)	PTGS2 (ENSCHYG00000011084)	PDC (ENSCHYG00000011029)	ODR4 (ENSCHYG00000010804)	TPR (ENSCHYG00000010259)	ENSCHYG00000010138	ENSCHYG00000010100	HMCN1 (ENSCHYG00000009811)	ENSCHYG00000009772	IVNS1ABP (ENSCHYG00000009539)	SWT1 (ENSCHYG00000009022)
Percora_a	ANCESTRAL SPECIES	15	ENSGT00390000011724 #7	ENSGT00530000064210 #8	ENSGT01030000234620.a.b.b.b #9	ENSGT00390000017528 #10	ENSGT00940000162504 #11	ENSGT00940000156376 #12	ENSGT00940000162770	ENSGT00940000161120 #13	ENSGT00390000001374 #14	ENSGT00720000108846.a #15	ENSGT00390000018676	ENSGT01030000234625.B.c #17	ENSGT00390000012703.a #18	ENSGT00940000157391 #19	ENSGT00940000155656 #21	ENSGT00940000154790.a.a.b #22	ENSGT00940000157082 #23	ENSGT00940000156874 #24	ENSGT00730000111187.b #25	ENSGT00940000156560 #26	ENSGT01030000234606.b	ENSGT00390000010743.a	ENSGT01000000216183.a	ENSGT00940000156236	ENSGT00390000012568	ENSGT00730000111014	ENSGT00990000204652	ENSGT00530000063751.a	ENSGT00970000194703	ENSGT00940000154614	ENSGT00940000155635
Siberian musk deer	MODERN SPECIES	387																PROX1 (ENSMMSG00000012390) #22	SMYD2 (ENSMMSG00000012419) #23	PTPN14 (ENSMMSG00000012483) #24	CENPF (ENSMMSG00000012586) #25	KCNK2 (ENSMMSG00000012676) #26
Bovidae	ANCESTRAL SPECIES	15	ENSGT00390000011724 #7	ENSGT00530000064210 #8	ENSGT01030000234620.a.b.b.b #9	ENSGT00390000017528 #10	ENSGT00940000162504 #11	ENSGT00940000156376 #12	ENSGT00940000162770	ENSGT00940000161120 #13	ENSGT00390000001374 #14	ENSGT00720000108846.a #15	ENSGT00390000018676	ENSGT01030000234625.B.c #17	ENSGT00390000012703.a #18	ENSGT00940000157391 #19	ENSGT00940000155656 #21	ENSGT00940000154790.a.a.b #22	ENSGT00940000157082 #23	ENSGT00940000156874 #24	ENSGT00730000111187.b #25	ENSGT00940000156560 #26	ENSGT01030000234606.b	ENSGT00390000010743.a	ENSGT01000000216183.a	ENSGT00940000156236	ENSGT00390000012568	ENSGT00730000111014	ENSGT00990000204652	ENSGT00530000063751.a	ENSGT00970000194703	ENSGT00940000154614	ENSGT00940000155635
Caprinae	ANCESTRAL SPECIES	12	ENSGT00390000011724 #7	ENSGT00530000064210 #8	ENSGT01030000234620.a.b.b.b #9	ENSGT00390000017528 #10	ENSGT00940000162504 #11	ENSGT00940000156376 #12	ENSGT00940000162770	ENSGT00940000161120 #13	ENSGT00390000001374 #14	ENSGT00720000108846.a #15	ENSGT00390000018676	ENSGT01030000234625.B.c #17	ENSGT00390000012703.a #18	ENSGT00940000157391 #19	ENSGT00940000155656 #21	ENSGT00940000154790.a.a.b #22	ENSGT00940000157082 #23	ENSGT00940000156874 #24	ENSGT00730000111187.b #25	ENSGT00940000156560 #26	ENSGT01030000234606.b	ENSGT00390000010743.a	ENSGT01000000216183.a	ENSGT00940000156236	ENSGT00390000012568	ENSGT00730000111014	ENSGT00530000063751.a	ENSGT00970000194703	ENSGT00940000154614	ENSGT00940000155635	ENSGT00390000001254
Rambouillet Sheep	MODERN SPECIES	3	LAMB3 (ENSOARG00020020472)	G0S2 (ENSOARG00020020456)	HSD11B1 (ENSOARG00020020417)	TRAF3IP3 (ENSOARG00020019992)	C1orf74 (ENSOARG00020019909)	ENSOARG00020019761	UTP25 (ENSOARG00020019628)	SYT14 (ENSOARG00020019477)	SERTAD4 (ENSOARG00020019447)	KCNH1 (ENSOARG00020018286)	ENSOARG00020018204	RCOR3 (ENSOARG00020017402)	TRAF5 (ENSOARG00020017026)	RD3 (ENSOARG00020016974)	SLC30A1 (ENSOARG00020016940)	PROX1 (ENSOARG00020016871) #22	SMYD2 (ENSOARG00020016785) #23	PTPN14 (ENSOARG00020016706) #24	CSNK1A1 (ENSOARG00020016517)	KCNK2 (ENSOARG00020016271) #26	PLA2G4A (ENSOARG00020016112)	PTGS2 (ENSOARG00020015961)	ENSOARG00020015900	PDC (ENSOARG00020015837)	ODR4 (ENSOARG00020015548)	TPR (ENSOARG00020015200)	ENSOARG00020015135	HMCN1 (ENSOARG00020007150)	IVNS1ABP (ENSOARG00020006631)	TRMT1L (ENSOARG00020006285)	RNF2 (ENSOARG00020006226)
Goat	MODERN SPECIES	7	INTS7 (ENSCHIG00000021252) #7	DTL (ENSCHIG00000018130) #8	PPP2R5A (ENSCHIG00000017773) #9	PACC1 (ENSCHIG00000025983) #10	NENF (ENSCHIG00000025026) #11	ATF3 (ENSCHIG00000015367) #12	GARIN4 (ENSCHIG00000011288)	BATF3 (ENSCHIG00000019379) #13	NSL1 (ENSCHIG00000015806) #14	TATDN3 (ENSCHIG00000012673) #15	SPATA45 (ENSCHIG00000012564)	FLVCR1 (ENSCHIG00000024444) #17	VASH2 (ENSCHIG00000011863) #18	ANGEL2 (ENSCHIG00000015562) #19	RPS6KC1 (ENSCHIG00000014648) #21	PROX1 (ENSCHIG00000021581) #22	SMYD2 (ENSCHIG00000018913) #23	PTPN14 (ENSCHIG00000013844) #24	CENPF (ENSCHIG00000012476) #25	KCNK2 (ENSCHIG00000021436) #26	PLA2G4A (ENSCHIG00000026282)	PTGS2 (ENSCHIG00000023277)	PDC (ENSCHIG00000009984)	ODR4 (ENSCHIG00000014516)	TPR (ENSCHIG00000014240)	PRG4 (ENSCHIG00000010860)	ENSCHIG00000016570	HMCN1 (ENSCHIG00000023131)	IVNS1ABP (ENSCHIG00000025228)	SWT1 (ENSCHIG00000023511)	TRMT1L (ENSCHIG00000016522)
Bovinae	ANCESTRAL SPECIES	12	ENSGT00390000011724 #7	ENSGT00530000064210 #8	ENSGT01030000234620.a.b.b.b #9	ENSGT00390000017528 #10	ENSGT00940000162504 #11	ENSGT00940000156376 #12	ENSGT00940000162770	ENSGT00940000161120 #13	ENSGT00390000001374 #14	ENSGT00720000108846.a #15	ENSGT00390000018676	ENSGT01030000234625.B.c #17	ENSGT00390000012703.a #18	ENSGT00940000157391 #19	ENSGT00940000155656 #21	ENSGT00940000154790.a.a.b #22	ENSGT00940000157082 #23	ENSGT00940000156874 #24	ENSGT00730000111187.b #25	ENSGT00940000156560 #26	ENSGT01030000234606.b	ENSGT00390000010743.a	ENSGT00940000156236	ENSGT00390000012568	ENSGT00730000111014	ENSGT00990000204652	ENSGT00530000063751.a	ENSGT00940000154614	ENSGT00940000155635	ENSGT00390000001254	ENSGT00530000063646.a
American bison	MODERN SPECIES	3236	INTS7 (ENSBBBG00000024708) #7	DTL (ENSBBBG00000024611) #8	PPP2R5A (ENSBBBG00000024543) #9	PACC1 (ENSBBBG00000006382) #10	NENF (ENSBBBG00000006377) #11	ATF3 (ENSBBBG00000024444) #12	GARIN4 (ENSBBBG00000006342)	BATF3 (ENSBBBG00000008830) #13	NSL1 (ENSBBBG00000024348) #14	TATDN3 (ENSBBBG00000008996) #15	SPATA45 (ENSBBBG00000006263)	FLVCR1 (ENSBBBG00000024087) #17	VASH2 (ENSBBBG00000024010) #18	ANGEL2 (ENSBBBG00000006232) #19	RPS6KC1 (ENSBBBG00000023896) #21	PROX1 (ENSBBBG00000006190) #22	SMYD2 (ENSBBBG00000023759) #23	ENSBBBG00000023741 #24	ENSBBBG00000023733 #24	ENSBBBG00000023727 #24	CENPF (ENSBBBG00000023713) #25	KCNK2 (ENSBBBG00000023686) #26	PLA2G4A (ENSBBBG00000023675)	PTGS2 (ENSBBBG00000023652)	PDC (ENSBBBG00000023637)	ODR4 (ENSBBBG00000023626)	TPR (ENSBBBG00000023530)	ENSBBBG00000023417	ENSBBBG00000023414	HMCN1 (ENSBBBG00000023377)	IVNS1ABP (ENSBBBG00000023274)
Bos	ANCESTRAL SPECIES	12	ENSGT00390000011724 #7	ENSGT00530000064210 #8	ENSGT01030000234620.a.b.b.b #9	ENSGT00390000017528 #10	ENSGT00940000162504 #11	ENSGT00940000156376 #12	ENSGT00940000162770	ENSGT00940000161120 #13	ENSGT00390000001374 #14	ENSGT00720000108846.a #15	ENSGT00390000018676	ENSGT01030000234625.B.c #17	ENSGT00390000012703.a #18	ENSGT00940000157391 #19	ENSGT00940000155656 #21	ENSGT00940000154790.a.a.b #22	ENSGT01100000263481.n.b.a.a.b	ENSGT00940000157082 #23	ENSGT01100000263480.a.a.b.a.a.a.b.b.b.a.a.a.a	ENSGT00940000156874 #24	ENSGT00730000111187.b #25	ENSGT00940000156560 #26	ENSGT01030000234606.b	ENSGT00390000010743.a	ENSGT00940000156236	ENSGT00390000012568	ENSGT00730000111014	ENSGT00990000204652	ENSGT00530000063751.a	ENSGT00940000154614	ENSGT00940000155635
Bos_b	ANCESTRAL SPECIES	27	ENSGT00390000011724 #7	ENSGT00530000064210 #8	ENSGT01030000234620.a.b.b.b #9	ENSGT00390000017528 #10	ENSGT00940000162504 #11	ENSGT00940000156376 #12	ENSGT00940000162770	ENSGT00940000161120 #13	ENSGT00390000001374 #14	ENSGT00720000108846.a #15	ENSGT00390000018676	ENSGT01030000234625.B.c #17	ENSGT00390000012703.a #18	ENSGT00940000157391 #19	ENSGT00940000155656 #21	ENSGT00940000154790.a.a.b #22	ENSGT01100000263481.n.b.a.a.b	ENSGT00940000157082 #23	ENSGT01100000263480.a.a.b.a.a.a.b.b.b.a.a.a.a	ENSGT00940000156874 #24	ENSGT00730000111187.b #25	ENSGT00940000156560 #26	ENSGT01030000234606.b	ENSGT00390000010743.a	ENSGT00940000156236	ENSGT00390000012568	ENSGT01100000263506.a.e.a.a.b.b.c.a	ENSGT00730000111014	ENSGT00530000063751.a	ENSGT00940000154614	ENSGT00390000002398.f.b.a
Hybrid Bos Indicus	MODERN SPECIES	7	DTL (ENSBIXG00005024306) #8	ENSBIXG00005024328	PACC1 (ENSBIXG00005004164) #10	NENF (ENSBIXG00005024408) #11	PPP2R5A (ENSBIXG00005024585) #9	ATF3 (ENSBIXG00005024730) #12	GARIN4 (ENSBIXG00005024742)	BATF3 (ENSBIXG00005024775) #13	NSL1 (ENSBIXG00005007082) #14	TATDN3 (ENSBIXG00005024928) #15	SPATA45 (ENSBIXG00005024959)	FLVCR1 (ENSBIXG00005004258) #17	VASH2 (ENSBIXG00005025071) #18	ANGEL2 (ENSBIXG00005025180) #19	RPS6KC1 (ENSBIXG00005025469) #21	PROX1 (ENSBIXG00005004362) #22	ENSBIXG00005025653	SMYD2 (ENSBIXG00005025677) #23	ENSBIXG00005025689	PTPN14 (ENSBIXG00005025759) #24	CENPF (ENSBIXG00005007633) #25	KCNK2 (ENSBIXG00005026006) #26	PLA2G4A (ENSBIXG00005026089)	PTGS2 (ENSBIXG00005026136)	PDC (ENSBIXG00005026156)	ODR4 (ENSBIXG00005026230)	ENSBIXG00005007200	TPR (ENSBIXG00005026389)	ENSBIXG00005026453	HMCN1 (ENSBIXG00005026493)	ENSBIXG00005026571
Cow	MODERN SPECIES	7	LPGAT1 (ENSBTAG00000005137)	INTS7 (ENSBTAG00000018548) #7	DTL (ENSBTAG00000018142) #8	PPP2R5A (ENSBTAG00000000754) #9	PACC1 (ENSBTAG00000000758) #10	NENF (ENSBTAG00000000759) #11	ATF3 (ENSBTAG00000008545) #12	BATF3 (ENSBTAG00000011982) #13	NSL1 (ENSBTAG00000011340) #14	TATDN3 (ENSBTAG00000024443) #15	SPATA45 (ENSBTAG00000010016)	FLVCR1 (ENSBTAG00000015974) #17	VASH2 (ENSBTAG00000003701) #18	ANGEL2 (ENSBTAG00000003702) #19	RPS6KC1 (ENSBTAG00000001181) #21	PROX1 (ENSBTAG00000010978) #22	SMYD2 (ENSBTAG00000013166) #23	PTPN14 (ENSBTAG00000021553) #24	CENPF (ENSBTAG00000024449) #25	KCNK2 (ENSBTAG00000004407) #26	PLA2G4A (ENSBTAG00000013298)	PTGS2 (ENSBTAG00000014127)	PDC (ENSBTAG00000004176)	ODR4 (ENSBTAG00000011946)	ENSBTAG00000047559	PRG4 (ENSBTAG00000011932)	ENSBTAG00000054031	HMCN1 (ENSBTAG00000015235)	ENSBTAG00000045729	IVNS1ABP (ENSBTAG00000014249)	SWT1 (ENSBTAG00000004492)
Bos_a	ANCESTRAL SPECIES	8	ENSGT00390000011724 #7	ENSGT00530000064210 #8	ENSGT01030000234620.a.b.b.b #9	ENSGT00390000017528 #10	ENSGT00940000162504 #11	ENSGT00940000156376 #12	ENSGT00940000162770	ENSGT00940000161120 #13	ENSGT00390000001374 #14	ENSGT00720000108846.a #15	ENSGT00390000018676	ENSGT01030000234625.B.c #17	ENSGT00390000012703.a #18	ENSGT00940000157391 #19	ENSGT00940000155656 #21	ENSGT00940000154790.a.a.b #22	ENSGT01100000263481.n.b.a.a.b	ENSGT00940000157082 #23	ENSGT01100000263480.a.a.b.a.a.a.b.b.b.a.a.a.a	ENSGT00940000156874 #24	ENSGT00730000111187.b #25	ENSGT00940000156560 #26	ENSGT01030000234606.b	ENSGT00390000010743.a	ENSGT00940000156236	ENSGT00390000012568	ENSGT00730000111014	ENSGT00990000204652	ENSGT00530000063751.a	ENSGT00940000154614	ENSGT00940000155635
Domestic yak	MODERN SPECIES	5	INTS7 (ENSBGRG00000021952) #7	DTL (ENSBGRG00000021712) #8	PPP2R5A (ENSBGRG00000021515) #9	PACC1 (ENSBGRG00000021413) #10	NENF (ENSBGRG00000021350) #11	ATF3 (ENSBGRG00000021213) #12	GARIN4 (ENSBGRG00000021184)	ENSBGRG00000021111 #13	NSL1 (ENSBGRG00000021044) #14	TATDN3 (ENSBGRG00000020764) #15	SPATA45 (ENSBGRG00000020720)	FLVCR1 (ENSBGRG00000020614) #17	VASH2 (ENSBGRG00000020510) #18	ANGEL2 (ENSBGRG00000020402) #19	RPS6KC1 (ENSBGRG00000020152) #21	PROX1 (ENSBGRG00000020065) #22	ENSBGRG00000020049	SMYD2 (ENSBGRG00000019833) #23	ENSBGRG00000019804	PTPN14 (ENSBGRG00000019676) #24	CENPF (ENSBGRG00000019358) #25	KCNK2 (ENSBGRG00000019112) #26	PLA2G4A (ENSBGRG00000018857)	PTGS2 (ENSBGRG00000018786)	PDC (ENSBGRG00000018729)	ODR4 (ENSBGRG00000018391)	TPR (ENSBGRG00000018185)	ENSBGRG00000018146	ENSBGRG00000018032	HMCN1 (ENSBGRG00000016713)	IVNS1ABP (ENSBGRG00000016348)
Wild yak	MODERN SPECIES	1265															ENSBMUG00000022539	PROX1 (ENSBMUG00000022529) #22	SMYD2 (ENSBMUG00000022509) #23	PTPN14 (ENSBMUG00000022468) #24	CENPF (ENSBMUG00000022412) #25	KCNK2 (ENSBMUG00000022388) #26	PLA2G4A (ENSBMUG00000022346)	ENSBMUG00000022310	PTGS2 (ENSBMUG00000022305)
Cetacea	ANCESTRAL SPECIES		ENSGT00390000011724 #7	ENSGT00530000064210 #8	ENSGT01030000234620.a.b.b.b #9	ENSGT00390000017528 #10	ENSGT00940000162504 #11	ENSGT00940000156376 #12	ENSGT00940000162770	ENSGT00940000161120 #13	ENSGT00390000001374.b #14	ENSGT00720000108846.a #15	ENSGT00390000018676	ENSGT01030000234625.B.c #17	ENSGT00390000012703.a #18	ENSGT00940000157391 #19	ENSGT00940000155656 #21	ENSGT00940000154790.a.a.b #22	ENSGT00940000157082 #23	ENSGT00940000156874 #24	ENSGT00730000111187.b #25	ENSGT00940000156560 #26	ENSGT01030000234606.b	ENSGT00390000010743.a	ENSGT00940000156236	ENSGT00390000012568	ENSGT00730000111014	ENSGT00530000063751.a	ENSGT00940000154614	ENSGT00940000155635	ENSGT00390000001254	ENSGT00530000063646.a	ENSGT00940000154499
Blue whale	MODERN SPECIES		INTS7 (ENSBMSG00010002812) #7	DTL (ENSBMSG00010002763) #8	PPP2R5A (ENSBMSG00010002700) #9	PACC1 (ENSBMSG00010002673) #10	NENF (ENSBMSG00010002661) #11	ATF3 (ENSBMSG00010002626) #12	BATF3 (ENSBMSG00010002581) #13	ENSBMSG00010002561 #14	TATDN3 (ENSBMSG00010002497) #15	SPATA45 (ENSBMSG00010002443)	FLVCR1 (ENSBMSG00010002424) #17	ENSBMSG00010002385	VASH2 (ENSBMSG00010002235) #18	ANGEL2 (ENSBMSG00010002179) #19	RPS6KC1 (ENSBMSG00010002148) #21	PROX1 (ENSBMSG00010002126) #22	SMYD2 (ENSBMSG00010002033) #23	PTPN14 (ENSBMSG00010002010) #24	CENPF (ENSBMSG00010001984) #25	KCNK2 (ENSBMSG00010001955) #26	PLA2G4A (ENSBMSG00010001939)	ENSBMSG00010001919	PTGS2 (ENSBMSG00010001902)	PDC (ENSBMSG00010001886)	ENSBMSG00010001875	ODR4 (ENSBMSG00010001834)	TPR (ENSBMSG00010001604)	PRG4 (ENSBMSG00010001505)	ENSBMSG00010001487	ENSBMSG00010001467	HMCN1 (ENSBMSG00010001306)
Odontoceti	ANCESTRAL SPECIES		ENSGT00390000011724 #7	ENSGT00530000064210 #8	ENSGT01030000234620.a.b.b.b #9	ENSGT00390000017528 #10	ENSGT00940000162504 #11	ENSGT00940000156376 #12	ENSGT00940000162770	ENSGT00940000161120 #13	ENSGT00390000001374.b #14	ENSGT00720000108846.a #15	ENSGT00390000018676	ENSGT01030000234625.B.c #17	ENSGT00390000012703.a #18	ENSGT00940000157391 #19	ENSGT00940000155656 #21	ENSGT00940000154790.a.a.b #22	ENSGT00940000157082 #23	ENSGT00940000156874 #24	ENSGT00730000111187.b #25	ENSGT00940000156560 #26	ENSGT01030000234606.b	ENSGT00390000010743.a	ENSGT00940000156236	ENSGT00390000012568	ENSGT00730000111014	ENSGT00530000063751.a	ENSGT00390000011010.b.r	ENSGT00940000165095	ENSGT00940000154614	ENSGT00940000155635	ENSGT00390000001254
Sperm whale	MODERN SPECIES	15	NEK2 (ENSPCTG00005004014)	LPGAT1 (ENSPCTG00005004002)	INTS7 (ENSPCTG00005003928) #7	DTL (ENSPCTG00005003869) #8	PPP2R5A (ENSPCTG00005003839) #9	TMEM206 (ENSPCTG00005003816) #10	ATF3 (ENSPCTG00005003791) #12	BATF3 (ENSPCTG00005003779) #13	NSL1 (ENSPCTG00005003768) #14	TATDN3 (ENSPCTG00005003740) #15	SPATA45 (ENSPCTG00005003721)	FLVCR1 (ENSPCTG00005003708) #17	VASH2 (ENSPCTG00005003680) #18	ANGEL2 (ENSPCTG00005003641) #19	RPS6KC1 (ENSPCTG00005003591) #21	PROX1 (ENSPCTG00005003580) #22	SMYD2 (ENSPCTG00005003567) #23	PTPN14 (ENSPCTG00005003527) #24	CENPF (ENSPCTG00005003467) #25	KCNK2 (ENSPCTG00005003432) #26	PLA2G4A (ENSPCTG00005003343)	PTGS2 (ENSPCTG00005003319)	PDC (ENSPCTG00005003309)	ODR4 (ENSPCTG00005003254)	TPR (ENSPCTG00005003205)	ENSPCTG00005003189	ENSPCTG00005003178	HMCN1 (ENSPCTG00005003155)	IVNS1ABP (ENSPCTG00005003106)	SWT1 (ENSPCTG00005003065)	TRMT1L (ENSPCTG00005003038)
Odontoceti_a	ANCESTRAL SPECIES		ENSGT00950000182836.b.a.b	ENSGT00390000011724 #7	ENSGT00530000064210 #8	ENSGT01030000234620.a.b.b.b #9	ENSGT00390000017528 #10	ENSGT00940000162504 #11	ENSGT00940000156376 #12	ENSGT00940000162770	ENSGT00940000161120 #13	ENSGT00390000001374.b #14	ENSGT00720000108846.a #15	ENSGT01030000234625.B.c #17	ENSGT00390000012703.a #18	ENSGT00940000157391 #19	ENSGT00940000155656 #21	ENSGT00940000154790.a.a.b #22	ENSGT00940000157082 #23	ENSGT00940000156874 #24	ENSGT00730000111187.b #25	ENSGT00940000156560 #26	ENSGT01030000234606.b	ENSGT00390000010743.a	ENSGT00940000156236	ENSGT00390000012568	ENSGT00730000111014	ENSGT00530000063751.a	ENSGT00390000011010.b.r	ENSGT00940000165095	ENSGT00940000154614	ENSGT00940000155635	ENSGT00390000001254
Odontoceti_b	ANCESTRAL SPECIES		ENSGT00390000011724 #7	ENSGT00530000064210 #8	ENSGT01030000234620.a.b.b.b #9	ENSGT00390000017528 #10	ENSGT00940000162504 #11	ENSGT00940000156376 #12	ENSGT00940000162770.d.a.b.a	ENSGT00940000161120 #13	ENSGT00390000001374.b #14	ENSGT00720000108846.a #15	ENSGT01030000234625.B.c #17	ENSGT00940000164345.b	ENSGT00390000012703.a #18	ENSGT00940000157391 #19	ENSGT00940000155656 #21	ENSGT00940000154790.a.a.b #22	ENSGT00940000157082 #23	ENSGT00940000156874 #24	ENSGT00730000111187.b #25	ENSGT01010000228810	ENSGT00940000156560 #26	ENSGT01030000234606.b	ENSGT00390000010743.a	ENSGT00940000156236	ENSGT00390000012568	ENSGT00730000111014	ENSGT00530000063751.a	ENSGT00390000011010.b.r	ENSGT00940000154614	ENSGT00940000155635	ENSGT00390000001254
Monodontidae	ANCESTRAL SPECIES		ENSGT00390000011724 #7	ENSGT00530000064210 #8	ENSGT01030000234620.a.b.b.b #9	ENSGT00390000017528 #10	ENSGT00940000162504 #11	ENSGT00940000156376 #12	ENSGT00940000161120 #13	ENSGT00390000001374.b #14	ENSGT00720000108846.a #15	ENSGT01030000234625.B.c #17	ENSGT00940000164345.b	ENSGT00390000012703.a #18	ENSGT00940000157391 #19	ENSGT00940000155656 #21	ENSGT00940000162770.d.a.b.a	ENSGT00940000154790.a.a.b #22	ENSGT00940000157082 #23	ENSGT00940000156874 #24	ENSGT00730000111187.b #25	ENSGT01010000228810	ENSGT00940000156560 #26	ENSGT01030000234606.b	ENSGT00390000010743.a	ENSGT00940000156236	ENSGT00390000012568	ENSGT00730000111014	ENSGT00530000063751.a	ENSGT00940000154614	ENSGT00390000011010.b.r	ENSGT00940000155635	ENSGT00390000001254
Narwhal	MODERN SPECIES	304	LPGAT1 (ENSMMNG00015018946)	INTS7 (ENSMMNG00015018987) #7	DTL (ENSMMNG00015019067) #8	PPP2R5A (ENSMMNG00015019141) #9	PACC1 (ENSMMNG00015019197) #10	NENF (ENSMMNG00015019225) #11	ATF3 (ENSMMNG00015019269) #12	BATF3 (ENSMMNG00015019336) #13	NSL1 (ENSMMNG00015019362) #14	TATDN3 (ENSMMNG00015019427) #15	FLVCR1 (ENSMMNG00015019473) #17	VASH2 (ENSMMNG00015019521) #18	ANGEL2 (ENSMMNG00015019589) #19	RPS6KC1 (ENSMMNG00015019616) #21	ENSMMNG00015019666	PROX1 (ENSMMNG00015019673) #22	SMYD2 (ENSMMNG00015019693) #23	PTPN14 (ENSMMNG00015019713) #24	CENPF (ENSMMNG00015019788) #25	ENSMMNG00015019879	KCNK2 (ENSMMNG00015019914) #26	ENSMMNG00015019957	ENSMMNG00015019980	PLA2G4A (ENSMMNG00015019995)	PTGS2 (ENSMMNG00015020023)	PDC (ENSMMNG00015020042)	ODR4 (ENSMMNG00015009258)	TPR (ENSMMNG00015009293)	PRG4 (ENSMMNG00015009329)	HMCN1 (ENSMMNG00015009447)	ENSMMNG00015009512
Beluga whale	MODERN SPECIES	27	INTS7 (ENSDLEG00000005323) #7	DTL (ENSDLEG00000005279) #8	PPP2R5A (ENSDLEG00000005259) #9	TMEM206 (ENSDLEG00000005248) #10	NENF (ENSDLEG00000005240) #11	ATF3 (ENSDLEG00000005236) #12	BATF3 (ENSDLEG00000005232) #13	NSL1 (ENSDLEG00000005221) #14	TATDN3 (ENSDLEG00000005209) #15	FLVCR1 (ENSDLEG00000005195) #17	ENSDLEG00000005192	VASH2 (ENSDLEG00000005184) #18	ANGEL2 (ENSDLEG00000005172) #19	RPS6KC1 (ENSDLEG00000005167) #21	ENSDLEG00000005159	PROX1 (ENSDLEG00000005155) #22	SMYD2 (ENSDLEG00000005142) #23	PTPN14 (ENSDLEG00000005130) #24	CENPF (ENSDLEG00000005094) #25	ENSDLEG00000005084	KCNK2 (ENSDLEG00000005077) #26	PLA2G4A (ENSDLEG00000005068)	PTGS2 (ENSDLEG00000005058)	ENSDLEG00000005053	PDC (ENSDLEG00000005043)	CUNH1orf27 (ENSDLEG00000005037)	TPR (ENSDLEG00000004878)	ENSDLEG00000004856	ENSDLEG00000004839	ENSDLEG00000020965	HMCN1 (ENSDLEG00000020934)
Vaquita	MODERN SPECIES		PPP2R5A (ENSPSNG00000009955) #9	PACC1 (ENSPSNG00000009896) #10	NENF (ENSPSNG00000009776) #11	ATF3 (ENSPSNG00000005166) #12	ENSPSNG00000005129	ENSPSNG00000005121	BATF3 (ENSPSNG00000005108) #13	NSL1 (ENSPSNG00000005089) #14	TATDN3 (ENSPSNG00000005047) #15	FLVCR1 (ENSPSNG00000004997) #17	ENSPSNG00000004972	VASH2 (ENSPSNG00000004908) #18	ANGEL2 (ENSPSNG00000004864) #19	RPS6KC1 (ENSPSNG00000004780) #21	ENSPSNG00000004733	PROX1 (ENSPSNG00000004714) #22	SMYD2 (ENSPSNG00000004685) #23	ENSPSNG00000004642 #24	ENSPSNG00000004626 #24	CENPF (ENSPSNG00000004592) #25	ENSPSNG00000004575	KCNK2 (ENSPSNG00000004556) #26	ENSPSNG00000004538	PLA2G4A (ENSPSNG00000004509)	PTGS2 (ENSPSNG00000004466)	ENSPSNG00000004446	ODR4 (ENSPSNG00000004359)	TPR (ENSPSNG00000004223)	ENSPSNG00000004150	ENSPSNG00000004130	HMCN1 (ENSPSNG00000004051)
Dolphin	MODERN SPECIES	4548																PROX1 (ENSTTRG00000003405) #22
Camelidae	ANCESTRAL SPECIES	52	ENSGT00390000011724 #7	ENSGT00530000064210 #8	ENSGT01030000234620.a.b.b.b #9	ENSGT00390000017528 #10	ENSGT00940000162504 #11	ENSGT00940000156376 #12	ENSGT00940000162770	ENSGT00940000161120 #13	ENSGT00390000001374 #14	ENSGT00720000108846.a #15	ENSGT00390000018676	ENSGT01030000234625.B.c #17	ENSGT00390000012703.a #18	ENSGT00940000157391 #19	ENSGT00940000155656 #21	ENSGT00940000154790.a.a.b #22	ENSGT00940000157082 #23	ENSGT00940000156874 #24	ENSGT00730000111187.b #25	ENSGT00940000156560 #26	ENSGT01030000234606.b	ENSGT00390000010743.a	ENSGT00940000156236	ENSGT00390000012568	ENSGT00730000111014	ENSGT00530000063751.a	ENSGT00940000154614	ENSGT00940000155635	ENSGT00390000001254	ENSGT00530000063646.a	ENSGT00940000154499
Arabian camel	MODERN SPECIES	15	DTL (ENSCDRG00005018574) #8	PPP2R5A (ENSCDRG00005018461) #9	PACC1 (ENSCDRG00005018426) #10	NENF (ENSCDRG00005018397) #11	ATF3 (ENSCDRG00005018313) #12	GARIN4 (ENSCDRG00005018296)	BATF3 (ENSCDRG00005018273) #13	NSL1 (ENSCDRG00005018177) #14	TATDN3 (ENSCDRG00005018011) #15	SPATA45 (ENSCDRG00005017983)	FLVCR1 (ENSCDRG00005017954) #17	VASH2 (ENSCDRG00005017896) #18	ANGEL2 (ENSCDRG00005017790) #19	RPS6KC1 (ENSCDRG00005017537) #21	ENSCDRG00005017471	PROX1 (ENSCDRG00005017410) #22	SMYD2 (ENSCDRG00005017161) #23	PTPN14 (ENSCDRG00005017064) #24	CENPF (ENSCDRG00005016956) #25	KCNK2 (ENSCDRG00005016790) #26	ENSCDRG00005016749	PLA2G4A (ENSCDRG00005016646)	PTGS2 (ENSCDRG00005016525)	PDC (ENSCDRG00005016460)	ODR4 (ENSCDRG00005016274)	TPR (ENSCDRG00005016006)	ENSCDRG00005015924	ENSCDRG00005015910	HMCN1 (ENSCDRG00005015717)	IVNS1ABP (ENSCDRG00005015575)	SWT1 (ENSCDRG00005015345)
Alpaca	MODERN SPECIES	34																PROX1 (ENSVPAG00000010381) #22	CENPF (ENSVPAG00000010384) #25	KCNK2 (ENSVPAG00000010387) #26
Laurasiatheria_b	ANCESTRAL SPECIES		ENSGT00390000011724 #7	ENSGT00530000064210 #8	ENSGT01030000234620.a.b.b.b #9	ENSGT00390000017528 #10	ENSGT00940000162504 #11	ENSGT00940000156376 #12	ENSGT00940000162770	ENSGT00940000161120 #13	ENSGT00390000001374 #14	ENSGT00720000108846.a #15	ENSGT00390000018676	ENSGT01030000234625.B.c #17	ENSGT00390000012703.a #18	ENSGT00940000157391 #19	ENSGT00940000155656 #21	ENSGT00940000154790.a.a.b #22	ENSGT00940000157082 #23	ENSGT00940000156874 #24	ENSGT00730000111187.b #25	ENSGT00940000156560 #26	ENSGT01030000234606.b	ENSGT00390000010743.a	ENSGT00940000156236	ENSGT00390000012568	ENSGT00730000111014	ENSGT00990000204652	ENSGT00530000063751.a	ENSGT00940000154614	ENSGT00940000155635	ENSGT00390000001254	ENSGT00530000063646.a
Carnivora	ANCESTRAL SPECIES	14	ENSGT00390000011724 #7	ENSGT00530000064210 #8	ENSGT01030000234620.a.b.b.b #9	ENSGT00390000017528 #10	ENSGT00940000162504 #11	ENSGT00940000156376 #12	ENSGT00940000162770	ENSGT00940000161120 #13	ENSGT00390000001374 #14	ENSGT00720000108846.a #15	ENSGT00390000018676	ENSGT01030000234625.B.c #17	ENSGT00390000012703.a #18	ENSGT00940000157391 #19	ENSGT00940000155656 #21	ENSGT00940000154790.a.a.b #22	ENSGT00940000157082 #23	ENSGT00940000156874 #24	ENSGT00730000111187.b #25	ENSGT00940000156560 #26	ENSGT00390000012166.o	ENSGT00430000032886	ENSGT00390000012166.p	ENSGT00940000155130	ENSGT00940000159504	ENSGT00940000157906	ENSGT00940000157458	ENSGT00500000044895	ENSGT00390000013003	ENSGT00940000157639	ENSGT00900000141021.a
Felidae	ANCESTRAL SPECIES	11	ENSGT00390000011724 #7	ENSGT00530000064210 #8	ENSGT01030000234620.a.b.b.b #9	ENSGT00390000017528 #10	ENSGT00940000162504 #11	ENSGT00940000156376 #12	ENSGT00940000162770	ENSGT00940000161120 #13	ENSGT00390000001374 #14	ENSGT00720000108846.a #15	ENSGT00390000018676	ENSGT01030000234625.B.c #17	ENSGT00390000012703.a #18	ENSGT00940000157391 #19	ENSGT00940000155656 #21	ENSGT00940000154790.a.a.b #22	ENSGT00940000157082 #23	ENSGT00940000156874 #24	ENSGT00730000111187.b #25	ENSGT00940000156560 #26	ENSGT00390000012166.o	ENSGT00430000032886	ENSGT00390000012166.p	ENSGT00940000155130	ENSGT00940000159504	ENSGT00940000157906	ENSGT00940000157458	ENSGT00500000044895	ENSGT00390000013003	ENSGT00940000157639	ENSGT00900000141021.a
Panthera	ANCESTRAL SPECIES	19	ENSGT00390000011724 #7	ENSGT00530000064210 #8	ENSGT01030000234620.a.b.b.b #9	ENSGT00390000017528 #10	ENSGT00940000162504 #11	ENSGT00940000156376 #12	ENSGT00940000162770	ENSGT00940000161120 #13	ENSGT00390000001374 #14	ENSGT00720000108846.a #15	ENSGT00390000018676	ENSGT01030000234625.B.c #17	ENSGT00390000012703.a #18	ENSGT00940000157391 #19	ENSGT00940000155656 #21	ENSGT00940000154790.a.a.b #22	ENSGT00940000157082 #23	ENSGT00940000156874 #24	ENSGT00730000111187.b #25	ENSGT00940000156560 #26	ENSGT00390000012166.o	ENSGT00430000032886	ENSGT00390000012166.p	ENSGT00940000155130	ENSGT00940000159504	ENSGT00940000157906	ENSGT00940000157458	ENSGT00500000044895	ENSGT00390000013003	ENSGT00940000157639	ENSGT00900000141021.a
Tiger	MODERN SPECIES	521	INTS7 (ENSPTIG00000006122) #7	DTL (ENSPTIG00000011890) #8	PPP2R5A (ENSPTIG00000014125) #9	PACC1 (ENSPTIG00000017660) #10	NENF (ENSPTIG00000019040) #11	ATF3 (ENSPTIG00000019609) #12	ENSPTIG00000004611	BATF3 (ENSPTIG00000005700) #13	NSL1 (ENSPTIG00000006400) #14	TATDN3 (ENSPTIG00000008310) #15	SPATA45 (ENSPTIG00000010479)	FLVCR1 (ENSPTIG00000010910) #17	VASH2 (ENSPTIG00000012122) #18	ANGEL2 (ENSPTIG00000013210) #19	RPS6KC1 (ENSPTIG00000015231) #21	PROX1 (ENSPTIG00000020637) #22	SMYD2 (ENSPTIG00000001732) #23	PTPN14 (ENSPTIG00000007134) #24	CENPF (ENSPTIG00000011051) #25	KCNK2 (ENSPTIG00000013664) #26	TOR1AIP2 (ENSPTIG00000015394)	ENSPTIG00000004327	TOR1AIP1 (ENSPTIG00000016393)	CEP350 (ENSPTIG00000017678)	QSOX1 (ENSPTIG00000018972)	LHX4 (ENSPTIG00000020936)	ACBD6 (ENSPTIG00000021140)	XPR1 (ENSPTIG00000021336)	KIAA1614 (ENSPTIG00000021831)	STX6 (ENSPTIG00000001345)	ENSPTIG00000003503
Panthera_a	ANCESTRAL SPECIES	19	ENSGT00390000011724 #7	ENSGT00530000064210 #8	ENSGT01030000234620.a.b.b.b #9	ENSGT00390000017528 #10	ENSGT00940000162504 #11	ENSGT00940000156376 #12	ENSGT00940000162770	ENSGT00940000161120 #13	ENSGT00390000001374 #14	ENSGT00720000108846.a #15	ENSGT00390000018676	ENSGT01030000234625.B.c #17	ENSGT00390000012703.a #18	ENSGT00940000157391 #19	ENSGT00940000155656 #21	ENSGT00940000154790.a.a.b #22	ENSGT00940000157082 #23	ENSGT00940000156874 #24	ENSGT00730000111187.b #25	ENSGT00940000156560 #26	ENSGT00390000012166.o	ENSGT00430000032886	ENSGT00390000012166.p	ENSGT00940000155130	ENSGT00940000159504	ENSGT00940000157906	ENSGT00940000157458	ENSGT00500000044895	ENSGT00390000013003	ENSGT00940000157639	ENSGT00900000141021.a
lion	MODERN SPECIES	17	INTS7 (ENSPLOG00000018844) #7	DTL (ENSPLOG00000018578) #8	PPP2R5A (ENSPLOG00000018428) #9	PACC1 (ENSPLOG00000018379) #10	NENF (ENSPLOG00000018345) #11	ATF3 (ENSPLOG00000018263) #12	ENSPLOG00000018205	BATF3 (ENSPLOG00000018177) #13	NSL1 (ENSPLOG00000018060) #14	TATDN3 (ENSPLOG00000017946) #15	SPATA45 (ENSPLOG00000017903)	FLVCR1 (ENSPLOG00000017866) #17	VASH2 (ENSPLOG00000017598) #18	ANGEL2 (ENSPLOG00000017554) #19	RPS6KC1 (ENSPLOG00000017403) #21	PROX1 (ENSPLOG00000017338) #22	SMYD2 (ENSPLOG00000017235) #23	PTPN14 (ENSPLOG00000017061) #24	CENPF (ENSPLOG00000017000) #25	KCNK2 (ENSPLOG00000016856) #26	TOR1AIP2 (ENSPLOG00000016786)	ENSPLOG00000016766	TOR1AIP1 (ENSPLOG00000016658)	CEP350 (ENSPLOG00000016365)	QSOX1 (ENSPLOG00000016291)	LHX4 (ENSPLOG00000016206)	ENSPLOG00000016177	ACBD6 (ENSPLOG00000016143)	XPR1 (ENSPLOG00000016050)	KIAA1614 (ENSPLOG00000015895)	STX6 (ENSPLOG00000015854)
leopard	MODERN SPECIES	4	INTS7 (ENSPPRG00000023594) #7	DTL (ENSPPRG00000022900) #8	PPP2R5A (ENSPPRG00000000673) #9	PACC1 (ENSPPRG00000000785) #10	NENF (ENSPPRG00000000821) #11	ATF3 (ENSPPRG00000002289) #12	BATF3 (ENSPPRG00000002718) #13	NSL1 (ENSPPRG00000002797) #14	TATDN3 (ENSPPRG00000004462) #15	SPATA45 (ENSPPRG00000005103)	FLVCR1 (ENSPPRG00000005353) #17	VASH2 (ENSPPRG00000005999) #18	ANGEL2 (ENSPPRG00000006421) #19	RPS6KC1 (ENSPPRG00000007642) #21	ENSPPRG00000008943	PROX1 (ENSPPRG00000009669) #22	SMYD2 (ENSPPRG00000009916) #23	PTPN14 (ENSPPRG00000010114) #24	ENSPPRG00000010575 #25	ENSPPRG00000010674 #25	KCNK2 (ENSPPRG00000011471) #26	TOR1AIP2 (ENSPPRG00000011986)	ENSPPRG00000022134	ENSPPRG00000012704	CEP350 (ENSPPRG00000013007)	QSOX1 (ENSPPRG00000013585)	LHX4 (ENSPPRG00000013805)	ACBD6 (ENSPPRG00000014588)	XPR1 (ENSPPRG00000017244)	KIAA1614 (ENSPPRG00000019158)	STX6 (ENSPPRG00000019648)
Cat	MODERN SPECIES	248	INTS7 (ENSFCAG00000009059) #7	DTL (ENSFCAG00000009064) #8	PPP2R5A (ENSFCAG00000025917) #9	NENF (ENSFCAG00000044045) #11	PACC1 (ENSFCAG00000014609) #10	ATF3 (ENSFCAG00000029636) #12	GARIN4 (ENSFCAG00000029432)	BATF3 (ENSFCAG00000040785) #13	NSL1 (ENSFCAG00000026230) #14	TATDN3 (ENSFCAG00000015401) #15	ENSFCAG00000044441	FLVCR1 (ENSFCAG00000000207) #17	VASH2 (ENSFCAG00000019311) #18	ANGEL2 (ENSFCAG00000000208) #19	RPS6KC1 (ENSFCAG00000011825) #21	PROX1 (ENSFCAG00000029702) #22	SMYD2 (ENSFCAG00000018917) #23	PTPN14 (ENSFCAG00000023866) #24	CENPF (ENSFCAG00000051534) #25	KCNK2 (ENSFCAG00000031853) #26	TOR1AIP2 (ENSFCAG00000042164)	TOR1AIP1 (ENSFCAG00000018463)	CEP350 (ENSFCAG00000014835)	QSOX1 (ENSFCAG00000031957)	LHX4 (ENSFCAG00000036053)	ACBD6 (ENSFCAG00000030568)	XPR1 (ENSFCAG00000011866)	KIAA1614 (ENSFCAG00000011867)	STX6 (ENSFCAG00000011869)	IER5 (ENSFCAG00000042819)	ENSFCAG00000037987
Caniformia	ANCESTRAL SPECIES	10	ENSGT00390000011724 #7	ENSGT00530000064210 #8	ENSGT01030000234620.a.b.b.b #9	ENSGT00390000017528 #10	ENSGT00940000162504 #11	ENSGT00940000156376 #12	ENSGT00940000162770	ENSGT00940000161120 #13	ENSGT00390000001374 #14	ENSGT00720000108846.a #15	ENSGT00390000018676	ENSGT01030000234625.B.c #17	ENSGT00390000012703.a #18	ENSGT00940000157391 #19	ENSGT00940000155656 #21	ENSGT00940000154790.a.a.b #22	ENSGT00940000157082 #23	ENSGT00940000156874 #24	ENSGT00730000111187.b #25	ENSGT00940000156560 #26	ENSGT00390000012166.o	ENSGT00430000032886	ENSGT00390000012166.p	ENSGT00940000155130	ENSGT00940000159504	ENSGT00940000157906	ENSGT00940000157458	ENSGT00500000044895	ENSGT00390000013003	ENSGT00940000157639	ENSGT00900000141021.a
Caniformia_b	ANCESTRAL SPECIES	8	ENSGT00390000011724 #7	ENSGT00530000064210 #8	ENSGT01030000234620.a.b.b.b #9	ENSGT00390000017528 #10	ENSGT00940000162504 #11	ENSGT00940000156376 #12	ENSGT00940000162770	ENSGT00940000161120 #13	ENSGT00390000001374 #14	ENSGT00720000108846.a #15	ENSGT00390000018676	ENSGT01030000234625.B.c #17	ENSGT00390000012703.a #18	ENSGT00940000157391 #19	ENSGT00940000155656 #21	ENSGT00940000154790.a.a.b #22	ENSGT00940000157082 #23	ENSGT00940000156874 #24	ENSGT00730000111187.b #25	ENSGT00940000156560 #26	ENSGT00390000012166.o	ENSGT00430000032886	ENSGT00390000012166.p	ENSGT00940000155130	ENSGT00940000159504	ENSGT00940000157906	ENSGT00940000157458	ENSGT00500000044895	ENSGT00390000013003	ENSGT00940000157639	ENSGT00900000141021.a
Ursidae	ANCESTRAL SPECIES	4	ENSGT00390000011724 #7	ENSGT00530000064210 #8	ENSGT01030000234620.a.b.b.b #9	ENSGT00390000017528 #10	ENSGT00940000162504 #11	ENSGT00940000156376 #12	ENSGT00940000162770	ENSGT00940000161120 #13	ENSGT00390000001374 #14	ENSGT00720000108846.a #15	ENSGT00390000018676	ENSGT01030000234625.B.c #17	ENSGT00390000012703.a #18	ENSGT00940000157391 #19	ENSGT00940000155656 #21	ENSGT00940000154790.a.a.b #22	ENSGT00940000157082 #23	ENSGT00940000156874 #24	ENSGT00730000111187.b #25	ENSGT00940000156560 #26	ENSGT00390000012166.o	ENSGT00390000012166.p	ENSGT00940000155130	ENSGT00940000159504	ENSGT00940000157906	ENSGT00940000157458	ENSGT00500000044895	ENSGT00390000013003	ENSGT00940000157639	ENSGT00900000141021.a	ENSGT00940000155601
Ursus	ANCESTRAL SPECIES	77	ENSGT00530000064210 #8	ENSGT01030000234620.a.b.b.b #9	ENSGT00390000017528 #10	ENSGT00940000162504 #11	ENSGT00940000163755	ENSGT00940000156376 #12	ENSGT00940000162770	ENSGT00940000161120 #13	ENSGT00390000001374 #14	ENSGT00720000108846.a #15	ENSGT00390000018676	ENSGT01030000234625.B.c #17	ENSGT00390000012703.a #18	ENSGT00940000157391 #19	ENSGT00940000155656 #21	ENSGT00940000154790.a.a.b #22	ENSGT00940000157082 #23	ENSGT00940000156874 #24	ENSGT00730000111187.b #25	ENSGT00940000156560 #26	ENSGT00390000012166.o	ENSGT00390000012166.p	ENSGT00940000155130	ENSGT00940000159504	ENSGT00940000157906	ENSGT00940000157458	ENSGT00500000044895	ENSGT00390000013003	ENSGT00940000157639	ENSGT00900000141021.a	ENSGT00940000155601
American black bear	MODERN SPECIES	1587																PROX1 (ENSUAMG00000002034) #22
Polar bear	MODERN SPECIES	230	INTS7 (ENSUMAG00000021062) #7	DTL (ENSUMAG00000020974) #8	PPP2R5A (ENSUMAG00000018579) #9	PACC1 (ENSUMAG00000018077) #10	ENSUMAG00000018069	ATF3 (ENSUMAG00000018064) #12	ENSUMAG00000018059	BATF3 (ENSUMAG00000018055) #13	NSL1 (ENSUMAG00000018042) #14	TATDN3 (ENSUMAG00000018034) #15	SPATA45 (ENSUMAG00000018025)	FLVCR1 (ENSUMAG00000018014) #17	VASH2 (ENSUMAG00000018002) #18	ANGEL2 (ENSUMAG00000017991) #19	RPS6KC1 (ENSUMAG00000017947) #21	PROX1 (ENSUMAG00000017920) #22	SMYD2 (ENSUMAG00000017891) #23	PTPN14 (ENSUMAG00000017744) #24	CENPF (ENSUMAG00000017628) #25	KCNK2 (ENSUMAG00000017613) #26	ENSUMAG00000017601	TOR1AIP2 (ENSUMAG00000017599)	TOR1AIP1 (ENSUMAG00000017588)	CEP350 (ENSUMAG00000017462)	QSOX1 (ENSUMAG00000017423)	LHX4 (ENSUMAG00000017412)	ACBD6 (ENSUMAG00000017394)	XPR1 (ENSUMAG00000017076)	KIAA1614 (ENSUMAG00000017039)	ENSUMAG00000017033	STX6 (ENSUMAG00000017027)
Giant Panda	MODERN SPECIES	18	INTS7 (ENSAMEG00000001226) #7	DTL (ENSAMEG00000001259) #8	PPP2R5A (ENSAMEG00000001284) #9	PACC1 (ENSAMEG00000001326) #10	NENF (ENSAMEG00000031283) #11	ATF3 (ENSAMEG00000001342) #12	GARIN4 (ENSAMEG00000020024)	BATF3 (ENSAMEG00000001350) #13	NSL1 (ENSAMEG00000023537) #14	TATDN3 (ENSAMEG00000001364) #15	SPATA45 (ENSAMEG00000001391)	FLVCR1 (ENSAMEG00000001394) #17	VASH2 (ENSAMEG00000001425) #18	ANGEL2 (ENSAMEG00000001436) #19	RPS6KC1 (ENSAMEG00000015771) #21	PROX1 (ENSAMEG00000015776) #22	SMYD2 (ENSAMEG00000015788) #23	PTPN14 (ENSAMEG00000015814) #24	CENPF (ENSAMEG00000015869) #25	ENSAMEG00000015760 #26	ENSAMEG00000030026	TOR1AIP1 (ENSAMEG00000002996)	CEP350 (ENSAMEG00000002966)	QSOX1 (ENSAMEG00000002935)	LHX4 (ENSAMEG00000002919)	ACBD6 (ENSAMEG00000002908)	XPR1 (ENSAMEG00000002871)	KIAA1614 (ENSAMEG00000002864)	STX6 (ENSAMEG00000002848)	ENSAMEG00000002844	CACNA1E (ENSAMEG00000007637)
Mustelinae	ANCESTRAL SPECIES	88	ENSGT00950000182836.b.a.b	ENSGT00390000011724 #7	ENSGT00530000064210 #8	ENSGT01030000234620.a.b.b.b #9	ENSGT00390000017528 #10	ENSGT00940000162504 #11	ENSGT00940000156376 #12	ENSGT00940000161120 #13	ENSGT00390000001374 #14	ENSGT00720000108846.a #15	ENSGT00390000018676	ENSGT01030000234625.B.c #17	ENSGT00390000012703.a #18	ENSGT00940000157391 #19	ENSGT00940000155656 #21	ENSGT00940000154790.a.a.b #22	ENSGT00940000157082 #23	ENSGT00940000156874 #24	ENSGT00730000111187.b #25	ENSGT00940000156560 #26
Ferret	MODERN SPECIES	451						ENSMPUG00000020069	BATF3 (ENSMPUG00000013390) #13	NSL1 (ENSMPUG00000013391) #14	TATDN3 (ENSMPUG00000013406) #15	ENSMPUG00000013410	FLVCR1 (ENSMPUG00000013413) #17	VASH2 (ENSMPUG00000013418) #18	ANGEL2 (ENSMPUG00000013439) #19	RPS6KC1 (ENSMPUG00000013445) #21	ENSMPUG00000013452	PROX1 (ENSMPUG00000013456) #22	ENSMPUG00000013461	SMYD2 (ENSMPUG00000013463) #23	PTPN14 (ENSMPUG00000013504) #24
American mink	MODERN SPECIES	43	LGAT1 (ENSNVIG00000004432)	INT7 (ENSNVIG00000004452) #7	DTL (ENSNVIG00000004646) #8	PPP2R5A (ENSNVIG00000004688) #9	TM206 (ENSNVIG00000004730) #10	NENF (ENSNVIG00000004737) #11	ATF3 (ENSNVIG00000004753) #12	BATF3 (ENSNVIG00000004806) #13	NSL1 (ENSNVIG00000004815) #14	TATDN3 (ENSNVIG00000004850) #15	CA227 (ENSNVIG00000005023)	FLVCR1 (ENSNVIG00000005037) #17	VASH2 (ENSNVIG00000005082) #18	ANGEL2 (ENSNVIG00000005114) #19	RPS6KC1 (ENSNVIG00000005128) #21	PROX1 (ENSNVIG00000005310) #22	SMYD2 (ENSNVIG00000005342) #23	PTPN14 (ENSNVIG00000005367) #24	CENPF (ENSNVIG00000005412) #25	KCNK2 (ENSNVIG00000005447) #26
Canidae	ANCESTRAL SPECIES	1	ENSGT00390000011724 #7	ENSGT00530000064210 #8	ENSGT01030000234620.a.b.b.b #9	ENSGT00390000017528 #10	ENSGT00940000162504 #11	ENSGT00940000156376 #12	ENSGT00940000162770	ENSGT00940000161120 #13	ENSGT00390000001374 #14	ENSGT00720000108846.a #15	ENSGT00390000018676	ENSGT01030000234625.B.c #17	ENSGT00390000012703.a #18	ENSGT00940000157391 #19	ENSGT00940000155656 #21	ENSGT00940000154790.a.a.b #22	ENSGT00940000157082 #23	ENSGT00940000156874 #24	ENSGT00730000111187.b #25	ENSGT00940000156560 #26	ENSGT00390000012166.o	ENSGT00430000032886	ENSGT00390000012166.p	ENSGT00940000155130	ENSGT00940000159504	ENSGT00940000157906	ENSGT00940000157458	ENSGT00500000044895	ENSGT00390000013003	ENSGT00940000157639	ENSGT00950000183198.c.b.a.u
Red fox	MODERN SPECIES	35			PPP2R5A (ENSVVUG00000007879) #9	PACC1 (ENSVVUG00000007887) #10	ENSVVUG00000007899	ATF3 (ENSVVUG00000007910) #12	ENSVVUG00000007913	BATF3 (ENSVVUG00000007918) #13	ENSVVUG00000007921 #14	TATDN3 (ENSVVUG00000007930) #15	SPATA45 (ENSVVUG00000007935)	FLVCR1 (ENSVVUG00000007944) #17	VASH2 (ENSVVUG00000007952) #18	ANGEL2 (ENSVVUG00000007956) #19	RPS6KC1 (ENSVVUG00000007970) #21	PROX1 (ENSVVUG00000008030) #22	SMYD2 (ENSVVUG00000008062) #23	PTPN14 (ENSVVUG00000008306) #24	CENPF (ENSVVUG00000008374) #25	KCNK2 (ENSVVUG00000008394) #26	ENSVVUG00000008463	TOR1AIP2 (ENSVVUG00000008469)	TOR1AIP1 (ENSVVUG00000008478)	CEP350 (ENSVVUG00000008522)	QSOX1 (ENSVVUG00000008583)	ENSVVUG00000008656	LHX4 (ENSVVUG00000008659)	ACBD6 (ENSVVUG00000008692)	XPR1 (ENSVVUG00000008743)	KIAA1614 (ENSVVUG00000008762)	STX6 (ENSVVUG00000008773)
Canis_lupus	ANCESTRAL SPECIES	4	ENSGT00530000064210 #8	ENSGT00940000158890.p.b	ENSGT01030000234620.a.b.b.b #9	ENSGT00390000017528 #10	ENSGT00940000162504 #11	ENSGT00940000156376 #12	ENSGT00940000162770	ENSGT00940000161120 #13	ENSGT00390000001374 #14	ENSGT00720000108846.a #15	ENSGT00390000018676	ENSGT01030000234625.B.c #17	ENSGT00390000012703.a #18	ENSGT00940000157391 #19	ENSGT00940000155656 #21	ENSGT00940000154790.a.a.b #22	ENSGT00940000157082 #23	ENSGT00940000156874 #24	ENSGT00730000111187.b #25	ENSGT00940000156560 #26	ENSGT00390000012166.o	ENSGT00430000032886	ENSGT00390000012166.p	ENSGT00940000155130	ENSGT00940000159504	ENSGT00940000157906	ENSGT00940000157458	ENSGT00500000044895	ENSGT00390000013003	ENSGT00940000157639	ENSGT00900000141021.a
Dog	MODERN SPECIES	35	PACC1 (ENSCAFG00845003695) #10	NENF (ENSCAFG00845003726) #11	ATF3 (ENSCAFG00845003749) #12	GARIN4 (ENSCAFG00845003772)	ENSCAFG00845003779	BATF3 (ENSCAFG00845003785) #13	NSL1 (ENSCAFG00845003808) #14	ENSCAFG00845003831	TATDN3 (ENSCAFG00845003857) #15	ENSCAFG00845001121	FLVCR1 (ENSCAFG00845001151) #17	ENSCAFG00845001182	VASH2 (ENSCAFG00845001231) #18	ANGEL2 (ENSCAFG00845001293) #19	RPS6KC1 (ENSCAFG00845001399) #21	PROX1 (ENSCAFG00845001606) #22	SMYD2 (ENSCAFG00845001630) #23	ENSCAFG00845001638	PTPN14 (ENSCAFG00845001665) #24	CENPF (ENSCAFG00845001752) #25	ENSCAFG00845001892 #26	ENSCAFG00845001932	ENSCAFG00845001949	ENSCAFG00845001973	ENSCAFG00845001988	ENSCAFG00845002008	TOR1AIP1 (ENSCAFG00845002082)	CEP350 (ENSCAFG00845002165)	ENSCAFG00845002252	QSOX1 (ENSCAFG00845002288)	LHX4 (ENSCAFG00845002410)
Dingo	DUPLICATION
Dingo	DUPLICATION
Dingo	MODERN SPECIES	271	ENSCAFG00020013907	PPP2R5A (ENSCAFG00020013910) #9	PACC1 (ENSCAFG00020013915) #10	NENF (ENSCAFG00020013923) #11	ATF3 (ENSCAFG00020013925) #12	ENSCAFG00020013926	BATF3 (ENSCAFG00020013939) #13	ENSCAFG00020013943 #14	TATDN3 (ENSCAFG00020013945) #15	SPATA45 (ENSCAFG00020013949)	FLVCR1 (ENSCAFG00020013952) #17	VASH2 (ENSCAFG00020013980) #18	ANGEL2 (ENSCAFG00020013985) #19	RPS6KC1 (ENSCAFG00020014029) #21	ENSCAFG00020014356 #22	ENSCAFG00020014358 #22	SMYD2 (ENSCAFG00020014364) #23	PTPN14 (ENSCAFG00020014374) #24	ENSCAFG00020014420 #25	ENSCAFG00020014427	KCNK2 (ENSCAFG00020014440) #26	ENSCAFG00020014457	TOR1AIP2 (ENSCAFG00020014460)	ENSCAFG00020014461	TOR1AIP1 (ENSCAFG00020014463)	ENSCAFG00020014465	CEP350 (ENSCAFG00020014473)	QSOX1 (ENSCAFG00020014546)	LHX4 (ENSCAFG00020014557)	ACBD6 (ENSCAFG00020014559)	ENSCAFG00020014563
Dingo	MODERN SPECIES	225																ENSCAFG00020000006 #22
Dingo	MODERN SPECIES	271	DTL (ENSCAFG00020013894) #8	ENSCAFG00020013907	PPP2R5A (ENSCAFG00020013910) #9	PACC1 (ENSCAFG00020013915) #10	NENF (ENSCAFG00020013923) #11	ATF3 (ENSCAFG00020013925) #12	ENSCAFG00020013926	BATF3 (ENSCAFG00020013939) #13	ENSCAFG00020013943 #14	TATDN3 (ENSCAFG00020013945) #15	SPATA45 (ENSCAFG00020013949)	FLVCR1 (ENSCAFG00020013952) #17	VASH2 (ENSCAFG00020013980) #18	ANGEL2 (ENSCAFG00020013985) #19	RPS6KC1 (ENSCAFG00020014029) #21	ENSCAFG00020014356 #22	ENSCAFG00020014358 #22	SMYD2 (ENSCAFG00020014364) #23	PTPN14 (ENSCAFG00020014374) #24	ENSCAFG00020014420 #25	ENSCAFG00020014427	KCNK2 (ENSCAFG00020014440) #26	ENSCAFG00020014457	TOR1AIP2 (ENSCAFG00020014460)	ENSCAFG00020014461	TOR1AIP1 (ENSCAFG00020014463)	ENSCAFG00020014465	CEP350 (ENSCAFG00020014473)	QSOX1 (ENSCAFG00020014546)	LHX4 (ENSCAFG00020014557)	ACBD6 (ENSCAFG00020014559)
Laurasiatheria_c	ANCESTRAL SPECIES		ENSGT00390000011724 #7	ENSGT00530000064210 #8	ENSGT01030000234620.a.b.b.b #9	ENSGT00390000017528 #10	ENSGT00940000162504 #11	ENSGT00940000156376 #12	ENSGT00940000162770	ENSGT00940000161120 #13	ENSGT00390000001374 #14	ENSGT00720000108846.a #15	ENSGT00390000018676	ENSGT01030000234625.B.c #17	ENSGT00390000012703.a #18	ENSGT00940000157391 #19	ENSGT00940000155656 #21	ENSGT00940000154790.a.a.b #22	ENSGT00940000157082 #23	ENSGT00940000156874 #24	ENSGT00730000111187.b #25	ENSGT00940000156560 #26	ENSGT01030000234606.b	ENSGT00390000010743.a	ENSGT00940000156236	ENSGT00390000012568	ENSGT00730000111014	ENSGT00530000063751.a	ENSGT00940000154614	ENSGT00940000155635	ENSGT00390000001254	ENSGT00530000063646.a	ENSGT00940000154499
Equus	ANCESTRAL SPECIES	33	ENSGT00530000064210 #8	ENSGT01030000234620.a.b.b.b #9	ENSGT00390000017528 #10	ENSGT00940000162504 #11	ENSGT00940000156376 #12	ENSGT00940000162770	ENSGT00940000161120 #13	ENSGT00390000001374 #14	ENSGT00720000108846.a #15	ENSGT00390000018676	ENSGT00950000183198.c.b.a.u.a	ENSGT01030000234625.B.c #17	ENSGT00390000012703.a #18	ENSGT00940000157391 #19	ENSGT00940000155656 #21	ENSGT00940000154790.a.a.b #22	ENSGT00940000157082 #23	ENSGT00940000156874 #24	ENSGT00730000111187.b #25	ENSGT00940000156560 #26	ENSGT01030000234606.b	ENSGT00390000010743.a	ENSGT00940000156236	ENSGT00390000012568	ENSGT00730000111014	ENSGT00530000063751.a.h	ENSGT00940000154614	ENSGT00940000155635	ENSGT00390000001254	ENSGT00530000063646.a	ENSGT00940000154499
Donkey	MODERN SPECIES	17	DTL (ENSEASG00005002794) #8	PPP2R5A (ENSEASG00005002799) #9	PACC1 (ENSEASG00005002801) #10	NENF (ENSEASG00005034192) #11	ATF3 (ENSEASG00005002809) #12	GARIN4 (ENSEASG00005002812)	BATF3 (ENSEASG00005038008) #13	NSL1 (ENSEASG00005002819) #14	TATDN3 (ENSEASG00005002825) #15	SPATA45 (ENSEASG00005024302)	ENSEASG00005002833	FLVCR1 (ENSEASG00005002836) #17	VASH2 (ENSEASG00005002846) #18	ANGEL2 (ENSEASG00005002856) #19	RPS6KC1 (ENSEASG00005002866) #21	PROX1 (ENSEASG00005030708) #22	SMYD2 (ENSEASG00005002894) #23	PTPN14 (ENSEASG00005003087) #24	CENPF (ENSEASG00005003253) #25	ENSEASG00005003260 #26	ENSEASG00005003268	ENSEASG00005003470	PTGS2 (ENSEASG00005005459)	PDC (ENSEASG00005005464)	ODR4 (ENSEASG00005005469)	TPR (ENSEASG00005005475)	ENSEASG00005005489	ENSEASG00005024699	HMCN1 (ENSEASG00005027535)	IVNS1ABP (ENSEASG00005005527)	SWT1 (ENSEASG00005005530)
Horse	MODERN SPECIES	26	ENSECAG00000046910	PPP2R5A (ENSECAG00000007665) #9	PACC1 (ENSECAG00000018726) #10	NENF (ENSECAG00000014943) #11	ATF3 (ENSECAG00000011486) #12	GARIN4 (ENSECAG00000011089)	BATF3 (ENSECAG00000011042) #13	NSL1 (ENSECAG00000009355) #14	TATDN3 (ENSECAG00000008513) #15	SPATA45 (ENSECAG00000038528)	ENSECAG00000033183	FLVCR1 (ENSECAG00000017787) #17	ANGEL2 (ENSECAG00000010723) #19	VASH2 (ENSECAG00000015846) #18	RPS6KC1 (ENSECAG00000021706) #21	PROX1 (ENSECAG00000019220) #22	SMYD2 (ENSECAG00000022049) #23	PTPN14 (ENSECAG00000007687) #24	CENPF (ENSECAG00000024127) #25	KCNK2 (ENSECAG00000023472) #26	ENSECAG00000031761	PLA2G4A (ENSECAG00000024810)	PTGS2 (ENSECAG00000017181)	PDC (ENSECAG00000015729)	ODR4 (ENSECAG00000008289)	TPR (ENSECAG00000020724)	ENSECAG00000020648	ENSECAG00000044821	HMCN1 (ENSECAG00000007173)	IVNS1ABP (ENSECAG00000018870)	SWT1 (ENSECAG00000012085)
Chiroptera	ANCESTRAL SPECIES	22	ENSGT00390000011724 #7	ENSGT00530000064210 #8	ENSGT01030000234620.a.b.b.b #9	ENSGT00390000017528 #10	ENSGT00940000162504 #11	ENSGT00940000156376 #12	ENSGT00940000162770	ENSGT00940000161120 #13	ENSGT00390000001374 #14	ENSGT00720000108846.a #15	ENSGT00390000018676	ENSGT01030000234625.B.c #17	ENSGT00390000012703.a #18	ENSGT00940000157391 #19	ENSGT00940000155656 #21	ENSGT00940000154790.a.a.b #22	ENSGT00940000157082 #23	ENSGT00940000156874 #24	ENSGT00730000111187.b #25	ENSGT00940000156560 #26	ENSGT01030000234606.b	ENSGT00390000010743.a	ENSGT00940000156236	ENSGT00390000012568	ENSGT00730000111014	ENSGT00530000063751.a	ENSGT00940000154614	ENSGT00940000155635	ENSGT00390000001254	ENSGT00530000063646.a	ENSGT00940000154499
Microchiroptera	ANCESTRAL SPECIES	22	ENSGT00390000011724 #7	ENSGT00530000064210 #8	ENSGT01030000234620.a.b.b.b #9	ENSGT00390000017528 #10	ENSGT00940000162504 #11	ENSGT00940000156376 #12	ENSGT00940000162770	ENSGT00940000161120 #13	ENSGT00390000001374 #14	ENSGT00720000108846.a #15	ENSGT00390000018676	ENSGT01030000234625.B.c #17	ENSGT00390000012703.a #18	ENSGT00940000157391 #19	ENSGT00940000155656 #21	ENSGT00940000154790.a.a.b #22	ENSGT00940000157082 #23	ENSGT00940000156874 #24	ENSGT00730000111187.b #25	ENSGT00940000156560 #26	ENSGT01030000234606.b	ENSGT00390000010743.a	ENSGT00940000156236	ENSGT00390000012568	ENSGT00730000111014	ENSGT00530000063751.a	ENSGT00940000154614	ENSGT00940000155635	ENSGT00390000001254	ENSGT00530000063646.a	ENSGT00940000154499
Greater horseshoe bat	MODERN SPECIES	14	ENSRFEG00010016189	PPP2R5A (ENSRFEG00010015983) #9	PACC1 (ENSRFEG00010015931) #10	NENF (ENSRFEG00010015882) #11	ATF3 (ENSRFEG00010015691) #12	ENSRFEG00010015625	BATF3 (ENSRFEG00010015564) #13	NSL1 (ENSRFEG00010015474) #14	ENSRFEG00010015432	TATDN3 (ENSRFEG00010015243) #15	SPATA45 (ENSRFEG00010015162)	FLVCR1 (ENSRFEG00010015101) #17	VASH2 (ENSRFEG00010014636) #18	ANGEL2 (ENSRFEG00010014572) #19	RPS6KC1 (ENSRFEG00010014099) #21	PROX1 (ENSRFEG00010013970) #22	SMYD2 (ENSRFEG00010013761) #23	PTPN14 (ENSRFEG00010013663) #24	CENPF (ENSRFEG00010013471) #25	KCNK2 (ENSRFEG00010013369) #26	PLA2G4A (ENSRFEG00010013298)	PTGS2 (ENSRFEG00010013243)	PDC (ENSRFEG00010013111)	ODR4 (ENSRFEG00010012882)	TPR (ENSRFEG00010011972)	PRG4 (ENSRFEG00010011855)	HMCN1 (ENSRFEG00010011748)	IVNS1ABP (ENSRFEG00010011670)	SWT1 (ENSRFEG00010011617)	TRMT1L (ENSRFEG00010011478)	RNF2 (ENSRFEG00010011316)
Microbat	MODERN SPECIES	1002	INTS7 (ENSMLUG00000011317) #7	DTL (ENSMLUG00000011353) #8	PPP2R5A (ENSMLUG00000009549) #9	PACC1 (ENSMLUG00000009572) #10	ENSMLUG00000009603	ATF3 (ENSMLUG00000015048) #12	GARIN4 (ENSMLUG00000015054)	BATF3 (ENSMLUG00000025827) #13	NSL1 (ENSMLUG00000009680) #14	TATDN3 (ENSMLUG00000009692) #15	SPATA45 (ENSMLUG00000009716)	FLVCR1 (ENSMLUG00000009724) #17	ENSMLUG00000002386 #18	ANGEL2 (ENSMLUG00000002393) #19	RPS6KC1 (ENSMLUG00000002406) #21	PROX1 (ENSMLUG00000006993) #22	SMYD2 (ENSMLUG00000017025) #23	PTPN14 (ENSMLUG00000017033) #24	CENPF (ENSMLUG00000017038) #25	KCNK2 (ENSMLUG00000007701) #26	PLA2G4A (ENSMLUG00000007650)	PTGS2 (ENSMLUG00000008204)	PDC (ENSMLUG00000013147)	ODR4 (ENSMLUG00000013135)	TPR (ENSMLUG00000016913)	ENSMLUG00000016901	HMCN1 (ENSMLUG00000016911)	IVNS1ABP (ENSMLUG00000014652)	SWT1 (ENSMLUG00000001142)	TRMT1L (ENSMLUG00000001136)	RNF2 (ENSMLUG00000001129)
Megabat	MODERN SPECIES	5002																PROX1 (ENSPVAG00000009067) #22	SMYD2 (ENSPVAG00000009068) #23	PTPN14 (ENSPVAG00000009069) #24
Atlantogenata	ANCESTRAL SPECIES	18	ENSGT00390000011724 #7	ENSGT00530000064210 #8	ENSGT01030000234620.a.b.b.b #9	ENSGT00390000017528 #10	ENSGT00940000162504 #11	ENSGT00940000156376 #12	ENSGT00940000162770	ENSGT00940000161120 #13	ENSGT00390000001374 #14	ENSGT00720000108846.a #15	ENSGT00390000018676	ENSGT01030000234625.B.c #17	ENSGT00390000012703.a #18	ENSGT00940000157391 #19	ENSGT00940000155656 #21	ENSGT00940000154790.a.a.b #22	ENSGT00940000157082 #23	ENSGT00940000156874 #24	ENSGT00730000111187.b #25	ENSGT00940000156560 #26	ENSGT00940000153881.a #27	ENSGT00940000165654	ENSGT00940000158456 #28	ENSGT00940000153433.B.a.b #29	ENSGT00410000025698.a #30	ENSGT00390000011270 #31	ENSGT00390000001960 #32	ENSGT00940000157390 #33	ENSGT00940000159171 #35	ENSGT00940000159967 #36	ENSGT00550000074815 #37
Afrotheria	ANCESTRAL SPECIES	140												ENSGT01030000234625.B.c #17	ENSGT00390000012703.a #18	ENSGT00940000157391 #19	ENSGT00940000155656 #21	ENSGT00940000154790.a.a.b #22	ENSGT00940000157082 #23	ENSGT00940000156874 #24	ENSGT00730000111187.b #25	ENSGT00940000156560 #26	ENSGT00940000153881.a #27	ENSGT00940000165654	ENSGT00940000158456 #28	ENSGT00940000153433.B.a.b #29	ENSGT00410000025698.a #30	ENSGT00390000011270 #31	ENSGT00390000001960 #32	ENSGT00940000157390 #33	ENSGT00940000159171 #35	ENSGT00940000159967 #36	ENSGT00550000074815 #37
Tenrec	MODERN SPECIES	1833																PROX1 (ENSETEG00000010042) #22	STAM2 (ENSETEG00000010035)
Afrotheria_a	ANCESTRAL SPECIES	141												ENSGT01030000234625.B.c #17	ENSGT00390000012703.a #18	ENSGT00940000157391 #19	ENSGT00940000155656 #21	ENSGT00940000154790.a.a.b #22	ENSGT00940000157082 #23	ENSGT00940000156874 #24	ENSGT00730000111187.b #25	ENSGT00940000156560 #26	ENSGT00940000153881.a #27	ENSGT00940000165654	ENSGT00940000158456 #28	ENSGT00940000153433.B.a.b #29	ENSGT00410000025698.a #30	ENSGT00390000011270 #31	ENSGT00390000001960 #32	ENSGT00940000157390 #33	ENSGT00940000159171 #35	ENSGT00940000159967 #36	ENSGT00550000074815 #37
Hyrax	MODERN SPECIES	10456																PROX1 (ENSPCAG00000009522) #22
Elephant	MODERN SPECIES	548												FLVCR1 (ENSLAFG00000011716) #17	VASH2 (ENSLAFG00000013919) #18	ANGEL2 (ENSLAFG00000013925) #19	RPS6KC1 (ENSLAFG00000021839) #21	PROX1 (ENSLAFG00000006344) #22	SMYD2 (ENSLAFG00000014142) #23	PTPN14 (ENSLAFG00000008102) #24	CENPF (ENSLAFG00000027249) #25	ENSLAFG00000031601	KCNK2 (ENSLAFG00000012174) #26	KCTD3 (ENSLAFG00000001745) #27	ENSLAFG00000027136	ENSLAFG00000026141 #28	ENSLAFG00000001746 #28	ESRRG (ENSLAFG00000007032) #29	ENSLAFG00000025672	GPATCH2 (ENSLAFG00000003787) #30	SPATA17 (ENSLAFG00000003789) #31	ENSLAFG00000014869 #32	TGFB2 (ENSLAFG00000002358) #33
Xenarthra	ANCESTRAL SPECIES	241									ENSGT00390000001374 #14	ENSGT00720000108846.a #15	ENSGT00390000018676	ENSGT01030000234625.B.c #17	ENSGT00390000012703.a #18	ENSGT00940000157391 #19	ENSGT00940000155656 #21	ENSGT00940000154790.a.a.b #22	ENSGT00940000157082 #23	ENSGT00940000156874 #24	ENSGT00730000111187.b #25	ENSGT00940000156560 #26	ENSGT00940000153881.a #27	ENSGT00940000158456 #28	ENSGT00940000153433.B.a.b #29
Sloth	MODERN SPECIES	1653																PROX1 (ENSCHOG00000010660) #22
Armadillo	MODERN SPECIES	2797						ENSDNOG00000041907	ENSDNOG00000003462 #14	TATDN3 (ENSDNOG00000031553) #15	SPATA45 (ENSDNOG00000003477)	FLVCR1 (ENSDNOG00000031484) #17	ENSDNOG00000038786	VASH2 (ENSDNOG00000008969) #18	ANGEL2 (ENSDNOG00000008978) #19	ENSDNOG00000013631 #21	ENSDNOG00000042638	PROX1 (ENSDNOG00000001297) #22	SMYD2 (ENSDNOG00000014059) #23	PTPN14 (ENSDNOG00000014080) #24	CENPF (ENSDNOG00000010010) #25	KCNK2 (ENSDNOG00000008257) #26	KCTD3 (ENSDNOG00000002406) #27	USH2A (ENSDNOG00000002408) #28	ESRRG (ENSDNOG00000037798) #29	ENSDNOG00000037766
Marsupialia	ANCESTRAL SPECIES	3	ENSGT00950000182836.b.a.b	ENSGT00390000011724 #7	ENSGT00530000064210 #8	ENSGT01030000234620.a.b.b.b #9	ENSGT00390000017528 #10	ENSGT00940000162504 #11	ENSGT00940000156376 #12	ENSGT00940000161120 #13	ENSGT00390000001374 #14	ENSGT00720000108846.a #15	ENSGT00390000018676	ENSGT01030000234625.B.c #17	ENSGT00390000012703.a #18	ENSGT00940000157391 #19	ENSGT00940000155656 #21	ENSGT00940000154790.a.a.b #22	ENSGT00940000157082 #23	ENSGT00940000156874 #24	ENSGT00730000111187.b #25	ENSGT00940000156560 #26	ENSGT00940000153881.a #27	ENSGT00940000158456 #28	ENSGT00940000153433.B.a.b #29	ENSGT00410000025698.a #30	ENSGT00390000011270 #31	ENSGT00390000001960 #32	ENSGT00940000157390 #33	ENSGT00940000159171 #35	ENSGT00940000159967 #36	ENSGT00550000074815 #37	ENSGT00940000157359
Opossum	MODERN SPECIES	1	DTL (ENSMODG00000002910) #8	PPP2R5A (ENSMODG00000002945) #9	PACC1 (ENSMODG00000002976) #10	NENF (ENSMODG00000002982) #11	ENSMODG00000044731	ATF3 (ENSMODG00000024736) #12	BATF3 (ENSMODG00000044517) #13	NSL1 (ENSMODG00000003069) #14	TATDN3 (ENSMODG00000003075) #15	ENSMODG00000048923	FLVCR1 (ENSMODG00000039454) #17	VASH2 (ENSMODG00000003103) #18	ANGEL2 (ENSMODG00000003145) #19	RPS6KC1 (ENSMODG00000003186) #21	ENSMODG00000047673	PROX1 (ENSMODG00000003211) #22	SMYD2 (ENSMODG00000003237) #23	PTPN14 (ENSMODG00000003269) #24	ENSMODG00000036470	ENSMODG00000003291 #25	ENSMODG00000041266	KCNK2 (ENSMODG00000003329) #26	KCTD3 (ENSMODG00000003356) #27	ENSMODG00000004113 #28	ENSMODG00000042624	ESRRG (ENSMODG00000004163) #29	GPATCH2 (ENSMODG00000004195) #30	SPATA17 (ENSMODG00000004247) #31	RRP15 (ENSMODG00000004288) #32	TGFB2 (ENSMODG00000004307) #33	LYPLAL1 (ENSMODG00000036911) #35
Marsupialia_b	ANCESTRAL SPECIES	6	ENSGT00950000182836.b.a.b	ENSGT00390000011724 #7	ENSGT00530000064210 #8	ENSGT01030000234620.a.b.b.b #9	ENSGT00390000017528 #10	ENSGT00940000162504 #11	ENSGT00940000156376 #12	ENSGT00940000161120 #13	ENSGT00390000001374 #14	ENSGT00720000108846.a #15	ENSGT00390000018676	ENSGT01030000234625.B.c #17	ENSGT00390000012703.a #18	ENSGT00940000157391 #19	ENSGT00940000155656 #21	ENSGT00940000154790.a.a.b #22	ENSGT00940000157082 #23	ENSGT00940000156874 #24	ENSGT00730000111187.b #25	ENSGT00940000156560 #26	ENSGT00940000153881.a #27	ENSGT00940000158456 #28	ENSGT00940000153433.B.a.b #29	ENSGT00410000025698.a #30	ENSGT00390000011270 #31	ENSGT00390000001960 #32	ENSGT00940000157390 #33	ENSGT00940000159171 #35	ENSGT00940000159967 #36	ENSGT00550000074815 #37	ENSGT00390000013770
Tasmanian devil	MODERN SPECIES	3	ENSSHAG00000022411	NEK2 (ENSSHAG00000023705)	LPGAT1 (ENSSHAG00000025369)	INTS7 (ENSSHAG00000001809) #7	DTL (ENSSHAG00000004304) #8	PPP2R5A (ENSSHAG00000007280) #9	PACC1 (ENSSHAG00000007950) #10	ENSSHAG00000030030 #12	ENSSHAG00000021860 #13	NSL1 (ENSSHAG00000031501) #14	TATDN3 (ENSSHAG00000029907) #15	FLVCR1 (ENSSHAG00000030976) #17	VASH2 (ENSSHAG00000012677) #18	ANGEL2 (ENSSHAG00000012912) #19	RPS6KC1 (ENSSHAG00000013922) #21	PROX1 (ENSSHAG00000030877) #22	SMYD2 (ENSSHAG00000017288) #23	PTPN14 (ENSSHAG00000017396) #24	ENSSHAG00000017822 #25	KCNK2 (ENSSHAG00000018337) #26	KCTD3 (ENSSHAG00000018757) #27	ENSSHAG00000028582 #28	ESRRG (ENSSHAG00000010535) #29	GPATCH2 (ENSSHAG00000015123) #30	ENSSHAG00000015894 #31	RRP15 (ENSSHAG00000017509) #32	TGFB2 (ENSSHAG00000017613) #33	ENSSHAG00000018298	ENSSHAG00000022431 #35	ENSSHAG00000026841	ENSSHAG00000029940 #36
Diprotodontia	ANCESTRAL SPECIES	7	ENSGT00950000182836.b.a.b	ENSGT00390000011724 #7	ENSGT00530000064210 #8	ENSGT01030000234620.a.b.b.b #9	ENSGT00390000017528 #10	ENSGT00940000162504 #11	ENSGT00940000156376 #12	ENSGT00940000161120 #13	ENSGT00390000001374 #14	ENSGT00720000108846.a #15	ENSGT00390000018676	ENSGT01030000234625.B.c #17	ENSGT00390000012703.a #18	ENSGT00940000157391 #19	ENSGT00940000155656 #21	ENSGT00940000154790.a.a.b #22	ENSGT00940000157082 #23	ENSGT00940000156874 #24	ENSGT00730000111187.b #25	ENSGT00940000156560 #26	ENSGT00940000153881.a #27	ENSGT00940000158456 #28	ENSGT00940000153433.B.a.b #29	ENSGT00410000025698.a #30	ENSGT00390000011270 #31	ENSGT00390000001960 #32	ENSGT00940000157390 #33	ENSGT00940000159171 #35	ENSGT00940000159967 #36	ENSGT00550000074815 #37	ENSGT00390000013770
Diprotodontia_a	ANCESTRAL SPECIES	3	ENSGT00390000011724 #7	ENSGT00530000064210 #8	ENSGT01030000234620.a.b.b.b #9	ENSGT00390000017528 #10	ENSGT00940000162504 #11	ENSGT00940000156376 #12	ENSGT00940000161120 #13	ENSGT00390000001374 #14	ENSGT00720000108846.a #15	ENSGT00390000018676	ENSGT01030000234625.B.c #17	ENSGT00390000012703.a #18	ENSGT00940000157391 #19	ENSGT00940000155656 #21	ENSGT00940000154859.d	ENSGT00940000154790.a.a.b #22	ENSGT00940000157082 #23	ENSGT00940000156874 #24	ENSGT00730000111187.b #25	ENSGT00940000156560 #26	ENSGT00940000153881.a #27	ENSGT00940000158456 #28	ENSGT00940000153433.B.a.b #29	ENSGT00410000025698.a #30	ENSGT00390000011270 #31	ENSGT00390000001960 #32	ENSGT00940000157390 #33	ENSGT00940000159171 #35	ENSGT00940000159967 #36	ENSGT00550000074815 #37	ENSGT00390000013770
Common wonbat	MODERN SPECIES	1035	DTL (ENSVURG00010011506) #8	ENSVURG00010011491	PPP2R5A (ENSVURG00010011454) #9	ENSVURG00010011442	PACC1 (ENSVURG00010011432) #10	NENF (ENSVURG00010011416) #11	ATF3 (ENSVURG00010011382) #12	BATF3 (ENSVURG00010011366) #13	NSL1 (ENSVURG00010011350) #14	TATDN3 (ENSVURG00010011308) #15	FLVCR1 (ENSVURG00010011238) #17	VASH2 (ENSVURG00010011158) #18	ANGEL2 (ENSVURG00010011143) #19	RPS6KC1 (ENSVURG00010010979) #21	ENSVURG00010010926	PROX1 (ENSVURG00010010899) #22	SMYD2 (ENSVURG00010010816) #23	PTPN14 (ENSVURG00010010786) #24	ENSVURG00010010704 #25	KCNK2 (ENSVURG00010010625) #26	ENSVURG00010010581	KCTD3 (ENSVURG00010010541) #27	ENSVURG00010010467 #28	ESRRG (ENSVURG00010010394) #29	GPATCH2 (ENSVURG00010010365) #30	ENSVURG00010010341	SPATA17 (ENSVURG00010010330) #31	ENSVURG00010010307 #32	ENSVURG00010010286 #33	ENSVURG00010010277	LYPLAL1 (ENSVURG00010010262) #35
koala	MODERN SPECIES	125	INTS7 (ENSPCIG00000006326) #7	DTL (ENSPCIG00000007249) #8	PPP2R5A (ENSPCIG00000013362) #9	PACC1 (ENSPCIG00000013367) #10	NENF (ENSPCIG00000013369) #11	ATF3 (ENSPCIG00000013371) #12	BATF3 (ENSPCIG00000030036) #13	NSL1 (ENSPCIG00000030035) #14	TATDN3 (ENSPCIG00000030033) #15	ENSPCIG00000030031	FLVCR1 (ENSPCIG00000030030) #17	VASH2 (ENSPCIG00000030028) #18	ANGEL2 (ENSPCIG00000030021) #19	RPS6KC1 (ENSPCIG00000030020) #21	ENSPCIG00000030016	PROX1 (ENSPCIG00000030015) #22	SMYD2 (ENSPCIG00000030013) #23	PTPN14 (ENSPCIG00000030011) #24	CENPF (ENSPCIG00000028486) #25	KCNK2 (ENSPCIG00000033427) #26
Wallaby	MODERN SPECIES	2673																PROX1 (ENSMEUG00000013465) #22
Platypus	MODERN SPECIES	10	LPGAT1 (ENSOANG00000008481)	INTS7 (ENSOANG00000008482) #7	DTL (ENSOANG00000008486) #8	PPP2R5A (ENSOANG00000008492) #9	ENSOANG00000008500	ATF3 (ENSOANG00000040285) #12	PACC1 (ENSOANG00000037820) #10	BATF3 (ENSOANG00000045778) #13	NSL1 (ENSOANG00000049937) #14	TATDN3 (ENSOANG00000008509) #15	ENSOANG00000043660	FLVCR1 (ENSOANG00000008510) #17	VASH2 (ENSOANG00000008512) #18	ANGEL2 (ENSOANG00000008513) #19	RPS6KC1 (ENSOANG00000008515) #21	PROX1 (ENSOANG00000008518) #22	SMYD2 (ENSOANG00000008519) #23	PTPN14 (ENSOANG00000008522) #24	ENSOANG00000008524 #25	ENSOANG00000037449	KCNK2 (ENSOANG00000008527) #26	KCTD3 (ENSOANG00000008530) #27	ENSOANG00000008536 #28	ESRRG (ENSOANG00000037936) #29	GPATCH2 (ENSOANG00000045673) #30	SPATA17 (ENSOANG00000008551) #31	RRP15 (ENSOANG00000008552) #32	TGFB2 (ENSOANG00000003782) #33	ENSOANG00000037826 #35	EPRS1 (ENSOANG00000001424) #37	BPNT1 (ENSOANG00000001425)
Sauria	ANCESTRAL SPECIES	1	ENSGT00530000064210 #8	ENSGT01030000234620.a.b.b.b #9	ENSGT00390000017528 #10	ENSGT00940000162504 #11	ENSGT00940000156376 #12	ENSGT00940000161120 #13	ENSGT00390000001374 #14	ENSGT00720000108846.a #15	ENSGT00960000188973	ENSGT00720000108846.b ##15	ENSGT00390000018676	ENSGT01030000234625.B.c #17	ENSGT00390000012703.a #18	ENSGT00940000157391 #19	ENSGT00940000155656 #21	ENSGT00940000154790.a.a.b #22	ENSGT00940000157082 #23	ENSGT00940000156874 #24	ENSGT00730000111187.b #25	ENSGT00940000156560 #26	ENSGT00940000153881.a #27	ENSGT00940000158456 #28	ENSGT00940000153433.B.a.b #29	ENSGT00410000025698.a #30	ENSGT00940000174613	ENSGT00390000011270 #31	ENSGT00390000001960 #32	ENSGT00940000157390 #33	ENSGT00940000159171 #35	ENSGT00940000179241	ENSGT00940000159967 #36
Lepidosauria	ANCESTRAL SPECIES		ENSGT00950000182836.b.a.b	ENSGT00390000011724 #7	ENSGT00530000064210 #8	ENSGT01030000234620.a.b.b.b #9	ENSGT00390000017528 #10	ENSGT00940000162504 #11	ENSGT00940000156376 #12	ENSGT00940000161120 #13	ENSGT00390000001374 #14	ENSGT00720000108846.a #15	ENSGT00960000188973	ENSGT01030000234625.B.c #17	ENSGT00390000012703.a #18	ENSGT00940000157391 #19	ENSGT00940000155656 #21	ENSGT00940000154790.a.a.b #22	ENSGT00940000157082 #23	ENSGT00940000156874 #24	ENSGT00730000111187.b #25	ENSGT00940000156560 #26	ENSGT00940000153881.a #27	ENSGT00940000158456 #28	ENSGT00940000153433.B.a.b #29	ENSGT00410000025698.a #30	ENSGT00940000174613	ENSGT00390000011270 #31	ENSGT00390000001960 #32	ENSGT00940000157390 #33	ENSGT00940000159171 #35	ENSGT00940000179241	ENSGT00940000159967 #36
Episquamata	ANCESTRAL SPECIES		ENSGT00390000011724 #7	ENSGT00530000064210 #8	ENSGT01030000234620.a.b.b.b #9	ENSGT00390000017528 #10	ENSGT00940000162504 #11	ENSGT00940000156376 #12	ENSGT00940000161120 #13	ENSGT00390000001374 #14	ENSGT00720000108846.a #15	ENSGT00960000188973	ENSGT01030000234625.B.c #17	ENSGT00390000012703.a #18	ENSGT00940000157391 #19	ENSGT00390000002443	ENSGT00940000155656 #21	ENSGT00940000154790.a.a.b #22	ENSGT00940000157082 #23	ENSGT00940000156874 #24	ENSGT00730000111187.b #25	ENSGT00940000156560 #26	ENSGT00940000153881.a #27	ENSGT00940000158456 #28	ENSGT00940000153433.B.a.b #29	ENSGT00410000025698.a #30	ENSGT00940000174613	ENSGT00390000011270 #31	ENSGT00390000001960 #32	ENSGT00940000157390 #33	ENSGT00940000159171 #35	ENSGT00940000179241	ENSGT00940000159967 #36
Toxicofera	ANCESTRAL SPECIES		ENSGT00390000011724 #7	ENSGT00530000064210 #8	ENSGT01030000234620.a.b.b.b #9	ENSGT00390000017528 #10	ENSGT00940000162504 #11	ENSGT00940000156376 #12	ENSGT00940000161120 #13	ENSGT00390000001374 #14	ENSGT00720000108846.a #15	ENSGT00960000188973	ENSGT01030000234625.B.c #17	ENSGT00390000012703.a #18	ENSGT00940000157391 #19	ENSGT00390000002443	ENSGT00940000155656 #21	ENSGT00940000154790.a.a.b #22	ENSGT00940000157082 #23	ENSGT00940000156874 #24	ENSGT00730000111187.b #25	ENSGT00940000156560 #26	ENSGT00940000153881.a #27	ENSGT00940000158456 #28	ENSGT00940000153433.B.a.b #29	ENSGT00410000025698.a #30	ENSGT00940000174613	ENSGT00390000011270 #31	ENSGT00390000001960 #32	ENSGT00940000157390 #33	ENSGT00940000159171 #35	ENSGT00940000179241	ENSGT00940000159967 #36
Elapidae	ANCESTRAL SPECIES		ENSGT00530000064210 #8	ENSGT01030000234620.a.b.b.b #9	ENSGT00390000017528 #10	ENSGT00940000162504 #11	ENSGT00940000156376 #12	ENSGT00940000161120 #13	ENSGT00390000001374 #14	ENSGT00720000108846.a #15	ENSGT00960000188973	ENSGT01030000234625.B.c #17	ENSGT00390000012703.a #18	ENSGT00940000157391 #19	ENSGT00390000002443	ENSGT00940000155656.d #21	ENSGT00940000155656.c #21	ENSGT00940000154790.a.a.b #22	ENSGT00940000157082 #23	ENSGT00940000156874 #24	ENSGT00730000111187.b #25	ENSGT00940000156560 #26	ENSGT00940000153881.a #27	ENSGT00940000158456 #28	ENSGT00940000153433.B.a.b #29	ENSGT00410000025698.a #30	ENSGT00940000174613	ENSGT00390000011270 #31	ENSGT00940000157390 #33	ENSGT00940000159171 #35	ENSGT00940000179241	ENSGT00940000159967 #36	ENSGT00900000143215
Elapidae_a	ANCESTRAL SPECIES	2	ENSGT01030000234620.a.b.b.b #9	ENSGT00390000017528 #10	ENSGT00940000162504 #11	ENSGT00940000156376 #12	ENSGT00940000161120 #13	ENSGT00390000001374 #14	ENSGT00720000108846.a #15	ENSGT00960000188973	ENSGT01030000234625.B.c #17	ENSGT00390000012703.a #18	ENSGT00940000157391 #19	ENSGT01000000221346	ENSGT00390000002443	ENSGT00940000155656.d #21	ENSGT00940000155656.c #21	ENSGT00940000154790.a.a.b #22	ENSGT00940000157082 #23	ENSGT00940000156874 #24	ENSGT00730000111187.a.b ##25	ENSGT00730000111187.b #25	ENSGT00940000156560 #26	ENSGT00940000153881.a #27	ENSGT00940000158456 #28	ENSGT00940000153433.B.a.b #29	ENSGT00410000025698.a #30	ENSGT00940000174613	ENSGT00390000011270 #31	ENSGT00940000157390 #33	ENSGT00940000159171 #35	ENSGT00940000179241	ENSGT00940000159967 #36
Acanthophiinae	ANCESTRAL SPECIES	3	ENSGT01030000234620.a.b.b.b #9	ENSGT00390000017528 #10	ENSGT00940000162504 #11	ENSGT00940000156376 #12	ENSGT00940000161120 #13	ENSGT00390000001374 #14	ENSGT00720000108846.a #15	ENSGT00960000188973	ENSGT01030000234625.B.c #17	ENSGT00390000012703.a #18	ENSGT00940000157391 #19	ENSGT01000000221346	ENSGT00390000002443	ENSGT00940000155656.d #21	ENSGT00940000155656.c #21	ENSGT00940000154790.a.a.b #22	ENSGT00940000157082 #23	ENSGT00940000156874.s #24	ENSGT00940000156874.t #24	ENSGT00730000111187.a.b ##25	ENSGT00730000111187.b #25	ENSGT00940000156560 #26	ENSGT00940000153881.a #27	ENSGT00940000158456 #28	ENSGT00940000153433.B.a.b #29	ENSGT00410000025698.a #30	ENSGT00940000174613	ENSGT00390000011270 #31	ENSGT00940000157390 #33	ENSGT00940000159171 #35	ENSGT00940000179241
Mainland tiger snake	MODERN SPECIES	3	PACC1 (ENSNSUG00000012829) #10	NENF (ENSNSUG00000012828) #11	ATF3 (ENSNSUG00000012827) #12	BATF3 (ENSNSUG00000012826) #13	NSL1 (ENSNSUG00000012825) #14	TATDN3 (ENSNSUG00000012823) #15	ENSNSUG00000012822	ENSNSUG00000012821 #17	ENSNSUG00000012819 #17	ENSNSUG00000012818 #17	VASH2 (ENSNSUG00000012817) #18	ANGEL2 (ENSNSUG00000012816) #19	KTI12 (ENSNSUG00000012815)	ENSNSUG00000012814 #21	ENSNSUG00000012792 #21	PROX1 (ENSNSUG00000012790) #22	SMYD2 (ENSNSUG00000012788) #23	ENSNSUG00000012786 #24	ENSNSUG00000012785 #24	ENSNSUG00000012784 #24	ENSNSUG00000012783 #24	CENPF (ENSNSUG00000012781) #25	KCNK2 (ENSNSUG00000012780) #26	KCTD3 (ENSNSUG00000012775) #27	USH2A (ENSNSUG00000012773) #28	ESRRG (ENSNSUG00000012772) #29	GPATCH2 (ENSNSUG00000012771) #30	SPATA17 (ENSNSUG00000012770) #31	TGFB2 (ENSNSUG00000012769) #33	LYPLAL1 (ENSNSUG00000012768) #35	ENSNSUG00000012767
Eastern brown snake	MODERN SPECIES	5	PPP2R5A (ENSPTXG00000013187) #9	PACC1 (ENSPTXG00000013186) #10	NENF (ENSPTXG00000013184) #11	ATF3 (ENSPTXG00000013183) #12	BATF3 (ENSPTXG00000013182) #13	ENSPTXG00000013179 #14	ENSPTXG00000013178	TATDN3 (ENSPTXG00000013177) #15	ENSPTXG00000013176	FLVCR1 (ENSPTXG00000013174) #17	VASH2 (ENSPTXG00000013171) #18	ANGEL2 (ENSPTXG00000013167) #19	ENSPTXG00000013166	KTI12 (ENSPTXG00000013165)	RPS6KC1 (ENSPTXG00000013082) #21	PROX1 (ENSPTXG00000013080) #22	SMYD2 (ENSPTXG00000013077) #23	ENSPTXG00000013075 #24	ENSPTXG00000013073 #24	ENSPTXG00000013072 #24	ENSPTXG00000013069 ##25	KCNK2 (ENSPTXG00000013067) #26	KCTD3 (ENSPTXG00000013065) #27	USH2A (ENSPTXG00000013057) #28	ESRRG (ENSPTXG00000013048) #29	GPATCH2 (ENSPTXG00000013043) #30	ENSPTXG00000013040	SPATA17 (ENSPTXG00000013036) #31	TGFB2 (ENSPTXG00000013032) #33	LYPLAL1 (ENSPTXG00000013029) #35	ENSPTXG00000013027 #36
Blue-lipped sea krait	MODERN SPECIES	1706																PROX1 (ENSLLTG00000016240) #22
Indian cobra	MODERN SPECIES		INTS7 (ENSNNAG00000004100) #7	DTL (ENSNNAG00000004150) #8	PPP2R5A (ENSNNAG00000004222) #9	PACC1 (ENSNNAG00000004337) #10	ENSNNAG00000004411	ATF3 (ENSNNAG00000004429) #12	BATF3 (ENSNNAG00000004447) #13	NSL1 (ENSNNAG00000004462) #14	TATDN3 (ENSNNAG00000004506) #15	ENSNNAG00000004540	FLVCR1 (ENSNNAG00000004570) #17	VASH2 (ENSNNAG00000004597) #18	ANGEL2 (ENSNNAG00000004624) #19	KTI12 (ENSNNAG00000004647)	RPS6KC1 (ENSNNAG00000004678) #21	PROX1 (ENSNNAG00000004851) #22	SMYD2 (ENSNNAG00000004887) #23	PTPN14 (ENSNNAG00000005319) #24	ENSNNAG00000005358 #25	KCNK2 (ENSNNAG00000005417) #26	KCTD3 (ENSNNAG00000005447) #27	USH2A (ENSNNAG00000005549) #28	ESRRG (ENSNNAG00000006202) #29	GPATCH2 (ENSNNAG00000006224) #30	ENSNNAG00000006251	SPATA17 (ENSNNAG00000006261) #31	TGFB2 (ENSNNAG00000006272) #33	LYPLAL1 (ENSNNAG00000006296) #35	ENSNNAG00000006306 #36	ENSNNAG00000006319 #36	EPRS1 (ENSNNAG00000006657) #37
Lizard	MODERN SPECIES		ENSACAG00000038796	INTS7 (ENSACAG00000006668) #7	DTL (ENSACAG00000006628) #8	PPP2R5A (ENSACAG00000029680) #9	ENSACAG00000037416	PACC1 (ENSACAG00000006381) #10	ENSACAG00000006366	ATF3 (ENSACAG00000006353) #12	BATF3 (ENSACAG00000006345) #13	NSL1 (ENSACAG00000038951) #14	TATDN3 (ENSACAG00000006315) #15	ENSACAG00000042552	VASH2 (ENSACAG00000006244) #18	ANGEL2 (ENSACAG00000006224) #19	RPS6KC1 (ENSACAG00000006181) #21	PROX1 (ENSACAG00000006174) #22	SMYD2 (ENSACAG00000006117) #23	PTPN14 (ENSACAG00000005904) #24	CENPF (ENSACAG00000005901) #25	KCNK2 (ENSACAG00000005812) #26	KCTD3 (ENSACAG00000017622) #27	USH2A (ENSACAG00000005658) #28	ESRRG (ENSACAG00000005586) #29	ENSACAG00000042984	GPATCH2 (ENSACAG00000014945) #30	ENSACAG00000045103	SPATA17 (ENSACAG00000014917) #31	ENSACAG00000043955	RRP15 (ENSACAG00000014906) #32	TGFB2 (ENSACAG00000001183) #33	ENSACAG00000044546
Laterata	ANCESTRAL SPECIES	4	ENSGT00390000011724 #7	ENSGT00530000064210 #8	ENSGT01030000234620.a.b.b.b #9	ENSGT00390000017528 #10	ENSGT00940000162504 #11	ENSGT00940000156376 #12	ENSGT00940000161120 #13	ENSGT00390000001374 #14	ENSGT00720000108846.a #15	ENSGT00960000188973	ENSGT01030000234625.B.c #17	ENSGT00390000012703.a #18	ENSGT00940000157391 #19	ENSGT00390000002443	ENSGT00940000155656 #21	ENSGT00940000154790.a.a.b #22	ENSGT00940000157082 #23	ENSGT00940000156874 #24	ENSGT00730000111187.b #25	ENSGT00940000156560 #26	ENSGT00940000153881.a #27	ENSGT00940000158456 #28	ENSGT00940000153433.B.a.b #29	ENSGT00410000025698.a #30	ENSGT00390000011270 #31	ENSGT00390000001960 #32	ENSGT00940000157390 #33	ENSGT00940000159171 #35	ENSGT00940000159967 #36	ENSGT00940000179241	ENSGT00550000074815 #37
Argentine black and white tegu	MODERN SPECIES	7	DTL (ENSSMRG00000018593) #8	PPP2R5A (ENSSMRG00000018595) #9	PACC1 (ENSSMRG00000018597) #10	ENSSMRG00000018598	NENF (ENSSMRG00000018599) #11	ATF3 (ENSSMRG00000018601) #12	BATF3 (ENSSMRG00000018602) #13	NSL1 (ENSSMRG00000018603) #14	TATDN3 (ENSSMRG00000018604) #15	ENSSMRG00000018605	FLVCR1 (ENSSMRG00000018606) #17	VASH2 (ENSSMRG00000018607) #18	ANGEL2 (ENSSMRG00000018609) #19	KTI12 (ENSSMRG00000018610)	RPS6KC1 (ENSSMRG00000018611) #21	PROX1 (ENSSMRG00000018612) #22	SMYD2 (ENSSMRG00000018613) #23	PTPN14 (ENSSMRG00000018703) #24	CENPF (ENSSMRG00000018705) #25	ENSSMRG00000018708	KCNK2 (ENSSMRG00000018709) #26	KCTD3 (ENSSMRG00000018712) #27	USH2A (ENSSMRG00000018713) #28	ESRRG (ENSSMRG00000018719) #29	GPATCH2 (ENSSMRG00000018722) #30	SPATA17 (ENSSMRG00000018724) #31	RRP15 (ENSSMRG00000018725) #32	TGFB2 (ENSSMRG00000018726) #33	LYPLAL1 (ENSSMRG00000018727) #35	ENSSMRG00000018728 #36	ENSSMRG00000018729 #36
Common wall lizard	MODERN SPECIES	11	DTL (ENSPMRG00000004523) #8	PPP2R5A (ENSPMRG00000004514) #9	PACC1 (ENSPMRG00000004508) #10	NENF (ENSPMRG00000004502) #11	ATF3 (ENSPMRG00000004496) #12	BATF3 (ENSPMRG00000004483) #13	NSL1 (ENSPMRG00000004477) #14	TATDN3 (ENSPMRG00000004468) #15	ENSPMRG00000004462	ENSPMRG00000004454	FLVCR1 (ENSPMRG00000004448) #17	VASH2 (ENSPMRG00000004436) #18	ANGEL2 (ENSPMRG00000004428) #19	KTI12 (ENSPMRG00000004423)	RPS6KC1 (ENSPMRG00000004404) #21	PROX1 (ENSPMRG00000004397) #22	SMYD2 (ENSPMRG00000004335) #23	PTPN14 (ENSPMRG00000004299) #24	CENPF (ENSPMRG00000004279) #25	ENSPMRG00000004258	KCNK2 (ENSPMRG00000004251) #26	KCTD3 (ENSPMRG00000004190) #27	ENSPMRG00000004169	USH2A (ENSPMRG00000004117) #28	ENSPMRG00000004095	ENSPMRG00000004090	ESRRG (ENSPMRG00000004060) #29	GPATCH2 (ENSPMRG00000004038) #30	SPATA17 (ENSPMRG00000004026) #31	ENSPMRG00000004022	RRP15 (ENSPMRG00000004017) #32
tuatara	MODERN SPECIES	792																PROX1 (ENSSPUG00000010541) #22	SMYD2 (ENSSPUG00000010580) #23	PTPN14 (ENSSPUG00000010602) #24	ENSSPUG00000010632 #25	KCNK2 (ENSSPUG00000010639) #26
Archelosauria	ANCESTRAL SPECIES	1	ENSGT00530000064210 #8	ENSGT01030000234620.a.b.b.b #9	ENSGT00390000017528 #10	ENSGT00940000162504 #11	ENSGT00940000156376 #12	ENSGT00940000161120 #13	ENSGT00390000001374 #14	ENSGT00720000108846.a #15	ENSGT00960000188973	ENSGT00720000108846.b ##15	ENSGT00390000018676	ENSGT01030000234625.B.c #17	ENSGT00390000012703.a #18	ENSGT00940000157391 #19	ENSGT00940000155656 #21	ENSGT00940000154790.a.a.b #22	ENSGT00940000157082 #23	ENSGT00940000156874 #24	ENSGT00730000111187.a.b ##25	ENSGT00730000111187.b #25	ENSGT00940000156560 #26	ENSGT00940000153881.a #27	ENSGT00940000158456 #28	ENSGT00940000153433.B.a.b #29	ENSGT00410000025698.a #30	ENSGT00940000174613	ENSGT00390000011270 #31	ENSGT00390000001960 #32	ENSGT00940000157390 #33	ENSGT00940000159171 #35	ENSGT00940000159967 #36
Cryptodira	ANCESTRAL SPECIES	1	ENSGT00390000011724 #7	ENSGT00530000064210 #8	ENSGT01030000234620.a.b.b.b #9	ENSGT00390000017528 #10	ENSGT00940000162504 #11	ENSGT00940000156376 #12	ENSGT00940000161120 #13	ENSGT00390000001374 #14	ENSGT00720000108846.a #15	ENSGT00720000108846.b ##15	ENSGT00390000018676	ENSGT01030000234625.B.c #17	ENSGT00390000012703.a #18	ENSGT00940000157391 #19	ENSGT00940000155656 #21	ENSGT00940000154790.a.a.b #22	ENSGT00940000157082 #23	ENSGT00940000156874 #24	ENSGT00730000111187.a.b ##25	ENSGT00730000111187.b #25	ENSGT00940000156560 #26	ENSGT00940000153881.a #27	ENSGT00940000158456 #28	ENSGT00940000153433.B.a.b #29	ENSGT00410000025698.a #30	ENSGT00940000174613	ENSGT00390000011270 #31	ENSGT00390000001960 #32	ENSGT00940000157390 #33	ENSGT00940000159171 #35	ENSGT00940000159967 #36
Testudinoidea	ANCESTRAL SPECIES		ENSGT00550000074815 #37	ENSGT00940000159967 #36	ENSGT00940000159171 #35	ENSGT00940000157390 #33	ENSGT00390000001960 #32	ENSGT00390000018321.h	ENSGT00390000011270 #31	ENSGT00940000174613	ENSGT00410000025698.a #30	ENSGT00940000153433.B.a.b #29	ENSGT00940000158456 #28	ENSGT00940000153881.a #27	ENSGT00390000012703.a #18	ENSGT00940000157391 #19	ENSGT00940000155656 #21	ENSGT00940000154790.a.a.b #22	ENSGT00940000157082.gb #23	ENSGT00940000156874 #24	ENSGT00730000111187.a.b ##25	ENSGT00730000111187.b #25	ENSGT00940000156560 #26	ENSGT01030000234625.B.c #17	ENSGT00390000018676	ENSGT00720000108846.b ##15	ENSGT00720000108846.a #15	ENSGT00390000001374 #14	ENSGT00940000161120 #13	ENSGT00940000156376 #12	ENSGT00940000162504 #11	ENSGT00390000017528 #10	ENSGT01030000234620.a.b.b.b #9
Emydidae	ANCESTRAL SPECIES	9	ENSGT00940000157359	ENSGT00550000074815 #37	ENSGT00940000159967 #36	ENSGT00940000159171 #35	ENSGT00940000157390 #33	ENSGT00390000001960 #32	ENSGT00390000018321.h	ENSGT00390000011270 #31	ENSGT00410000025698.a #30	ENSGT00940000153433.B.a.b #29	ENSGT00940000158456 #28	ENSGT00940000153881.a #27	ENSGT00390000012703.a #18	ENSGT00940000157391 #19	ENSGT00940000155656 #21	ENSGT00940000154790.a.a.b #22	ENSGT00940000157082.gb #23	ENSGT00940000156874 #24	ENSGT00940000156560 #26	ENSGT01030000234625.B.c #17	ENSGT00390000018676	ENSGT00720000108846.b ##15	ENSGT00720000108846.a #15	ENSGT00390000001374 #14	ENSGT00940000161120 #13	ENSGT00940000156376 #12	ENSGT00940000162504 #11	ENSGT00390000017528 #10	ENSGT01030000234620.a.b.b.b #9	ENSGT00530000064210 #8	ENSGT00390000011724 #7
painted turtle	MODERN SPECIES	2377	LYPLAL1 (ENSCPBG00000012940) #35	ENSCPBG00000012944	TGFB2 (ENSCPBG00000012945) #33	RRP15 (ENSCPBG00000012947) #32	ENSCPBG00000012949	SPATA17 (ENSCPBG00000012953) #31	GPATCH2 (ENSCPBG00000013037) #30	ENSCPBG00000013038	ESRRG (ENSCPBG00000013041) #29	ENSCPBG00000013050 #28	ENSCPBG00000013070 #28	KCTD3 (ENSCPBG00000013082) #27	VASH2 (ENSCPBG00000013087) #18	ANGEL2 (ENSCPBG00000013091) #19	RPS6KC1 (ENSCPBG00000013097) #21	PROX1 (ENSCPBG00000013115) #22	SMYD2 (ENSCPBG00000013122) #23	PTPN14 (ENSCPBG00000013127) #24	ENSCPBG00000013138 #26
Three-toed box turtle	MODERN SPECIES	125	EPRS1 (ENSTMTG00000017956) #37	SLC30A10 (ENSTMTG00000018008) #36	LYPLAL1 (ENSTMTG00000018020) #35	TGFB2 (ENSTMTG00000018029) #33	RRP15 (ENSTMTG00000018052) #32	ENSTMTG00000018126	SPATA17 (ENSTMTG00000018142) #31	GPATCH2 (ENSTMTG00000018164) #30	ENSTMTG00000018179	ESRRG (ENSTMTG00000018197) #29	USH2A (ENSTMTG00000018294) #28	KCTD3 (ENSTMTG00000018473) #27	VASH2 (ENSTMTG00000018512) #18	ANGEL2 (ENSTMTG00000018536) #19	RPS6KC1 (ENSTMTG00000018552) #21	PROX1 (ENSTMTG00000018584) #22	SMYD2 (ENSTMTG00000018593) #23	ENSTMTG00000018626 #24
Testudinidae	ANCESTRAL SPECIES	6	ENSGT00550000074815 #37	ENSGT00940000159967 #36	ENSGT00940000159171 #35	ENSGT00940000157390 #33	ENSGT00390000001960 #32	ENSGT00390000018321.h	ENSGT00390000011270 #31	ENSGT00940000174613	ENSGT00410000025698.a #30	ENSGT00940000153433.B.a.b #29	ENSGT00940000158456 #28	ENSGT00940000153881.a #27	ENSGT00390000012703.a #18	ENSGT00940000157391 #19	ENSGT00940000155656 #21	ENSGT00940000154790.a.a.b #22	ENSGT00940000157082.gb #23	ENSGT00940000156874 #24	ENSGT00730000111187.a.b ##25	ENSGT00730000111187.b #25	ENSGT00940000156560 #26	ENSGT01030000234625.B.c #17	ENSGT00960000188973	ENSGT00720000108846.b ##15	ENSGT00720000108846.a #15	ENSGT00390000001374 #14	ENSGT00940000161120 #13	ENSGT00940000156376 #12	ENSGT00940000162504 #11	ENSGT00390000017528 #10	ENSGT01030000234620.a.b.b.b #9
Goode s thornscrub tortoise	MODERN SPECIES	17	BPNT1 (ENSGEVG00005002738)	EPRS1 (ENSGEVG00005002772) #37	SLC30A10 (ENSGEVG00005002834) #36	LYPLAL1 (ENSGEVG00005002840) #35	TGFB2 (ENSGEVG00005002852) #33	RRP15 (ENSGEVG00005002868) #32	ENSGEVG00005002876	SPATA17 (ENSGEVG00005002887) #31	GPATCH2 (ENSGEVG00005002901) #30	ESRRG (ENSGEVG00005002932) #29	ENSGEVG00005002969 #28	KCTD3 (ENSGEVG00005002993) #27	VASH2 (ENSGEVG00005003035) #18	ANGEL2 (ENSGEVG00005003057) #19	RPS6KC1 (ENSGEVG00005003072) #21	PROX1 (ENSGEVG00005003094) #22	ENSGEVG00005003108 #23	SMYD2 (ENSGEVG00005003117) #23	PTPN14 (ENSGEVG00005003136) #24	CENPF (ENSGEVG00005003163) #25	KCNK2 (ENSGEVG00005003188) #26	FLVCR1 (ENSGEVG00005003222) #17	ENSGEVG00005003271	ENSGEVG00005003282 ##15	TATDN3 (ENSGEVG00005003294) #15	NSL1 (ENSGEVG00005003308) #14	BATF3 (ENSGEVG00005003315) #13	ATF3 (ENSGEVG00005003323) #12	NENF (ENSGEVG00005003335) #11	PACC1 (ENSGEVG00005003344) #10	PPP2R5A (ENSGEVG00005003359) #9
Abingdon island giant tortoise	MODERN SPECIES	2807													ANGEL2 (ENSCABG00000009475) #19	ENSCABG00000009474 #21	ENSCABG00000009470 #21	PROX1 (ENSCABG00000009463) #22	SMYD2 (ENSCABG00000009461) #23	PTPN14 (ENSCABG00000009435) #24	ENSCABG00000009432 ##25	ENSCABG00000009430 #25
Chinese turtle	MODERN SPECIES	1670																PROX1 (ENSPSIG00000008098) #22
Archosauria	ANCESTRAL SPECIES	3	ENSGT00950000182836.b.a.b	ENSGT00390000011724 #7	ENSGT00530000064210 #8	ENSGT01030000234620.a.b.b.b #9	ENSGT00390000017528 #10	ENSGT00940000162504 #11	ENSGT00940000156376 #12	ENSGT00940000161120 #13	ENSGT00390000001374 #14	ENSGT00720000108846.a #15	ENSGT00960000188973	ENSGT01030000234625.B.c #17	ENSGT00390000012703.a #18	ENSGT00940000157391 #19	ENSGT00940000155656 #21	ENSGT00940000154790.a.a.b #22	ENSGT00940000157082 #23	ENSGT00940000156874 #24	ENSGT00730000111187.a.b ##25	ENSGT00730000111187.b #25	ENSGT00940000156560 #26	ENSGT00940000153881.a #27	ENSGT00940000158456 #28	ENSGT00940000153433.B.a.b #29	ENSGT00410000025698.a #30	ENSGT00390000011270 #31	ENSGT00390000001960 #32	ENSGT00940000157390 #33	ENSGT00940000159171 #35	ENSGT00940000159967 #36	ENSGT00900000143215
Aves	ANCESTRAL SPECIES	12	ENSGT00950000182836.b.a.b	ENSGT00390000011724 #7	ENSGT00530000064210 #8	ENSGT01030000234620.a.b.b.b #9	ENSGT00390000017528 #10	ENSGT00940000162504 #11	ENSGT00940000156376 #12	ENSGT00940000161120 #13	ENSGT00390000001374 #14	ENSGT00720000108846.a #15	ENSGT00960000188973	ENSGT01030000234625.B.c #17	ENSGT00390000012703.a #18	ENSGT00940000157391 #19	ENSGT00940000155656 #21	ENSGT00940000154790.a.a.b #22	ENSGT00940000157082 #23	ENSGT00940000156874 #24	ENSGT00730000111187.a.b ##25	ENSGT00730000111187.b #25	ENSGT00940000156560 #26	ENSGT00940000153881.a #27	ENSGT00940000158456 #28	ENSGT00940000153433.B.a.b #29	ENSGT00410000025698.a #30	ENSGT00390000011270 #31	ENSGT00390000001960 #32	ENSGT00940000157390 #33	ENSGT00940000159171 #35	ENSGT00940000159967 #36	ENSGT00900000143215
Neognathae	ANCESTRAL SPECIES	2	ENSGT00950000182836.b.a.b	ENSGT00390000011724 #7	ENSGT00530000064210 #8	ENSGT01030000234620.a.b.b.b #9	ENSGT00940000163755	ENSGT00390000017528 #10	ENSGT00940000162504 #11	ENSGT00940000156376 #12	ENSGT00940000161120 #13	ENSGT00390000001374 #14	ENSGT00720000108846.a #15	ENSGT01030000234625.B.c #17	ENSGT00390000012703.a #18	ENSGT00940000157391 #19	ENSGT00940000155656 #21	ENSGT00940000154790.a.a.b #22	ENSGT00940000157082 #23	ENSGT00940000156874 #24	ENSGT00730000111187.a.b ##25	ENSGT00730000111187.b #25	ENSGT00940000156560 #26	ENSGT00940000153881.a #27	ENSGT00940000158456 #28	ENSGT00940000153433.B.a.b #29	ENSGT00410000025698.a #30	ENSGT00390000011270 #31	ENSGT00390000001960 #32	ENSGT00940000157390 #33	ENSGT00940000159171 #35	ENSGT00940000159967 #36	ENSGT00900000143215
Neognathae_b	ANCESTRAL SPECIES	1	ENSGT00950000182836.b.a.b	ENSGT00390000011724 #7	ENSGT00530000064210 #8	ENSGT01030000234620.a.b.b.b #9	ENSGT00940000163755	ENSGT00390000017528 #10	ENSGT00940000162504 #11	ENSGT00940000156376 #12	ENSGT00940000161120 #13	ENSGT00390000001374 #14	ENSGT00720000108846.a #15	ENSGT01030000234625.B.c #17	ENSGT00390000012703.a #18	ENSGT00940000157391 #19	ENSGT00940000155656 #21	ENSGT00940000154790.a.a.b #22	ENSGT00940000157082 #23	ENSGT00940000156874 #24	ENSGT00730000111187.a.b ##25	ENSGT00730000111187.b #25	ENSGT00940000156560 #26	ENSGT00940000153881.a #27	ENSGT00940000158456 #28	ENSGT00940000153433.B.a.b #29	ENSGT00410000025698.a #30	ENSGT00390000011270 #31	ENSGT00390000001960 #32	ENSGT00940000157390 #33	ENSGT00940000159171 #35	ENSGT00940000159967 #36	ENSGT00900000143215
Passeriformes	ANCESTRAL SPECIES	2	ENSGT00950000182836.b.a.b	ENSGT00390000011724 #7	ENSGT00530000064210 #8	ENSGT01030000234620.a.b.b.b #9	ENSGT00940000163755	ENSGT00390000017528 #10	ENSGT00940000162504 #11	ENSGT00940000156376 #12	ENSGT00940000161120 #13	ENSGT00390000001374 #14	ENSGT00720000108846.a #15	ENSGT01030000234625.B.c #17	ENSGT00390000012703.a #18	ENSGT00940000157391 #19	ENSGT00940000155656 #21	ENSGT00940000154790.a.a.b #22	ENSGT00940000157082 #23	ENSGT00940000156874 #24	ENSGT00730000111187.b #25	ENSGT00940000156560 #26	ENSGT00940000153881.a #27	ENSGT00940000158456 #28	ENSGT00940000153433.B.a.b #29	ENSGT00410000025698.a #30	ENSGT00390000011270 #31	ENSGT00390000001960 #32	ENSGT00940000157390 #33	ENSGT00940000159171 #35	ENSGT00940000162430.d.a.a	ENSGT00960000189403	ENSGT00940000162430.d.a.b
Great tit	MODERN SPECIES	22	NEK2 (ENSPMJG00000013580)	LPGAT1 (ENSPMJG00000013577)	INTS7 (ENSPMJG00000013576) #7	DTL (ENSPMJG00000013575) #8	PPP2R5A (ENSPMJG00000013574) #9	PACC1 (ENSPMJG00000013573) #10	NENF (ENSPMJG00000013572) #11	ATF3 (ENSPMJG00000013569) #12	BATF3 (ENSPMJG00000013565) #13	NSL1 (ENSPMJG00000013564) #14	TATDN3 (ENSPMJG00000013563) #15	FLVCR1 (ENSPMJG00000013562) #17	VASH2 (ENSPMJG00000013561) #18	ANGEL2 (ENSPMJG00000013560) #19	RPS6KC1 (ENSPMJG00000013553) #21	PROX1 (ENSPMJG00000013542) #22	SMYD2 (ENSPMJG00000013517) #23	PTPN14 (ENSPMJG00000013509) #24	CENPF (ENSPMJG00000013507) #25	KCNK2 (ENSPMJG00000013506) #26	KCTD3 (ENSPMJG00000013505) #27	USH2A (ENSPMJG00000013499) #28	ESRRG (ENSPMJG00000013493) #29	GPATCH2 (ENSPMJG00000013460) #30	SPATA17 (ENSPMJG00000013459) #31	RRP15 (ENSPMJG00000013443) #32	TGFB2 (ENSPMJG00000013438) #33	LYPLAL1 (ENSPMJG00000013434) #35	ENSPMJG00000013419	ENSPMJG00000013415	ENSPMJG00000013413 #36
Passeriformes_d	ANCESTRAL SPECIES	2	ENSGT00950000182836.b.a.b	ENSGT00390000011724 #7	ENSGT00530000064210 #8	ENSGT01030000234620.a.b.b.b #9	ENSGT00940000163755	ENSGT00390000017528 #10	ENSGT00940000162504 #11	ENSGT00940000156376.d #12	ENSGT00940000161120 #13	ENSGT00390000001374 #14	ENSGT00720000108846.a #15	ENSGT01030000234625.B.c #17	ENSGT00390000012703.a #18	ENSGT00940000157391 #19	ENSGT00940000155656 #21	ENSGT00940000154790.a.a.b #22	ENSGT00940000157082 #23	ENSGT00940000156874 #24	ENSGT00730000111187.b #25	ENSGT00940000156560 #26	ENSGT00940000153881.a #27	ENSGT00940000158456 #28	ENSGT00940000153433.B.a.b #29	ENSGT00410000025698.a #30	ENSGT00390000011270 #31	ENSGT00390000001960 #32	ENSGT00940000157390 #33	ENSGT00940000159171 #35	ENSGT00940000162430.d.a.a	ENSGT00960000189403	ENSGT00940000162430.d.a.b
Flycatcher	MODERN SPECIES	21	NEK2 (ENSFALG00000012477)	LPGAT1 (ENSFALG00000012463)	INTS7 (ENSFALG00000012450) #7	DTL (ENSFALG00000012431) #8	PPP2R5A (ENSFALG00000012423) #9	PACC1 (ENSFALG00000012420) #10	NENF (ENSFALG00000024990) #11	ATF3 (ENSFALG00000012408) #12	BATF3 (ENSFALG00000012404) #13	NSL1 (ENSFALG00000012399) #14	TATDN3 (ENSFALG00000012386) #15	FLVCR1 (ENSFALG00000012381) #17	VASH2 (ENSFALG00000012378) #18	ANGEL2 (ENSFALG00000012373) #19	RPS6KC1 (ENSFALG00000012366) #21	PROX1 (ENSFALG00000012357) #22	SMYD2 (ENSFALG00000012334) #23	PTPN14 (ENSFALG00000012316) #24	CENPF (ENSFALG00000012295) #25	KCNK2 (ENSFALG00000012286) #26	KCTD3 (ENSFALG00000012280) #27	USH2A (ENSFALG00000012264) #28	ESRRG (ENSFALG00000028650) #29	GPATCH2 (ENSFALG00000012223) #30	SPATA17 (ENSFALG00000012221) #31	RRP15 (ENSFALG00000012213) #32	TGFB2 (ENSFALG00000012209) #33	LYPLAL1 (ENSFALG00000012206) #35	ENSFALG00000012203	ENSFALG00000025614 #36	ENSFALG00000026781 #36
Passeriformes_g	ANCESTRAL SPECIES	1	ENSGT00950000182836.b.a.b	ENSGT00390000011724 #7	ENSGT00530000064210 #8	ENSGT01030000234620.a.b.b.b #9	ENSGT00940000163755	ENSGT00390000017528 #10	ENSGT00940000162504 #11	ENSGT00940000156376.d #12	ENSGT00940000161120 #13	ENSGT00390000001374 #14	ENSGT00720000108846.a #15	ENSGT01030000234625.B.c #17	ENSGT00390000012703.a #18	ENSGT00940000157391 #19	ENSGT00940000155656 #21	ENSGT00940000154790.a.a.b #22	ENSGT00940000157082 #23	ENSGT00940000156874 #24	ENSGT00730000111187.b #25	ENSGT00940000156560 #26	ENSGT00940000153881.a #27	ENSGT00940000158456 #28	ENSGT00940000153433.B.a.b #29	ENSGT00410000025698.a #30	ENSGT00390000011270 #31	ENSGT00390000001960 #32	ENSGT00940000157390 #33	ENSGT00940000159171 #35	ENSGT00940000162430.d.a.a	ENSGT00940000162777.a.a.b.a.a.b	ENSGT00940000159967 #36
Passeroidea	ANCESTRAL SPECIES		ENSGT00950000182836.b.a.b	ENSGT00390000011724 #7	ENSGT00530000064210 #8	ENSGT01030000234620.a.b.b.b #9	ENSGT00390000017528 #10	ENSGT00940000162504 #11	ENSGT00940000156376.d #12	ENSGT00940000156376.c #12	ENSGT00940000161120 #13	ENSGT00390000001374 #14	ENSGT00720000108846.a #15	ENSGT01030000234625.B.c #17	ENSGT00390000012703.a #18	ENSGT00940000157391 #19	ENSGT00940000155656 #21	ENSGT00940000154790.a.a.b #22	ENSGT00940000157082 #23	ENSGT00940000156874 #24	ENSGT00730000111187.b #25	ENSGT00940000156560 #26	ENSGT00940000153881.a #27	ENSGT00940000158456 #28	ENSGT00940000153433.B.a.b #29	ENSGT00410000025698.a #30	ENSGT00390000011270 #31	ENSGT00390000001960 #32	ENSGT00940000157390 #33	ENSGT00940000159171 #35	ENSGT00940000162430.d.a.a	ENSGT00940000162777.a.a.b.a.a.b	ENSGT00940000159967 #36
Common canary	MODERN SPECIES	41	LPGAT1 (ENSSCAG00000005968)	INTS7 (ENSSCAG00000005962) #7	DTL (ENSSCAG00000005955) #8	PPP2R5A (ENSSCAG00000005950) #9	PACC1 (ENSSCAG00000005947) #10	ENSSCAG00000005944	ENSSCAG00000005940 #12	ENSSCAG00000005938 #12	BATF3 (ENSSCAG00000005934) #13	NSL1 (ENSSCAG00000005931) #14	TATDN3 (ENSSCAG00000005926) #15	FLVCR1 (ENSSCAG00000005885) #17	VASH2 (ENSSCAG00000005868) #18	ANGEL2 (ENSSCAG00000005862) #19	RPS6KC1 (ENSSCAG00000005853) #21	PROX1 (ENSSCAG00000005837) #22	SMYD2 (ENSSCAG00000005830) #23	PTPN14 (ENSSCAG00000005823) #24	ENSSCAG00000005821	CENPF (ENSSCAG00000005817) #25	KCNK2 (ENSSCAG00000005813) #26	KCTD3 (ENSSCAG00000005803) #27	USH2A (ENSSCAG00000005780) #28	ESRRG (ENSSCAG00000005760) #29	GPATCH2 (ENSSCAG00000005750) #30	SPATA17 (ENSSCAG00000005721) #31	RRP15 (ENSSCAG00000005706) #32	TGFB2 (ENSSCAG00000005703) #33	LYPLAL1 (ENSSCAG00000005700) #35	ENSSCAG00000005697	ENSSCAG00000005695
Zebra finch	MODERN SPECIES	23	ENSTGUG00000003167	NEK2 (ENSTGUG00000003146)	LPGAT1 (ENSTGUG00000019484)	INTS7 (ENSTGUG00000003120) #7	DTL (ENSTGUG00000003109) #8	PPP2R5A (ENSTGUG00000003063) #9	PACC1 (ENSTGUG00000003056) #10	NENF (ENSTGUG00000022854) #11	ATF3 (ENSTGUG00000003050) #12	NSL1 (ENSTGUG00000003044) #14	TATDN3 (ENSTGUG00000003025) #15	FLVCR1 (ENSTGUG00000003013) #17	VASH2 (ENSTGUG00000003006) #18	ANGEL2 (ENSTGUG00000002995) #19	RPS6KC1 (ENSTGUG00000002977) #21	PROX1 (ENSTGUG00000002974) #22	SMYD2 (ENSTGUG00000002951) #23	PTPN14 (ENSTGUG00000002916) #24	CENPF (ENSTGUG00000002912) #25	KCNK2 (ENSTGUG00000002899) #26	KCTD3 (ENSTGUG00000002895) #27	USH2A (ENSTGUG00000002871) #28	ESRRG (ENSTGUG00000002862) #29	GPATCH2 (ENSTGUG00000002852) #30	SPATA17 (ENSTGUG00000002843) #31	RRP15 (ENSTGUG00000023322) #32	TGFB2 (ENSTGUG00000002825) #33	LYPLAL1 (ENSTGUG00000002820) #35	ENSTGUG00000002815	ENSTGUG00000027878	SLC30A10 (ENSTGUG00000026929) #36
Medium ground finch	MODERN SPECIES	2	LPGAT1 (ENSGFOG00000002275)	INTS7 (ENSGFOG00000002263) #7	DTL (ENSGFOG00000010366) #8	ENSGFOG00000010359	PPP2R5A (ENSGFOG00000010353) #9	ENSGFOG00000010339	PACC1 (ENSGFOG00000010330) #10	ATF3 (ENSGFOG00000010326) #12	BATF3 (ENSGFOG00000010323) #13	NSL1 (ENSGFOG00000010313) #14	TATDN3 (ENSGFOG00000010297) #15	FLVCR1 (ENSGFOG00000010235) #17	VASH2 (ENSGFOG00000010213) #18	ANGEL2 (ENSGFOG00000010208) #19	RPS6KC1 (ENSGFOG00000010195) #21	PROX1 (ENSGFOG00000010181) #22	SMYD2 (ENSGFOG00000010171) #23	PTPN14 (ENSGFOG00000010150) #24	CENPF (ENSGFOG00000010125) #25	KCNK2 (ENSGFOG00000010115) #26	KCTD3 (ENSGFOG00000010102) #27	USH2A (ENSGFOG00000009976) #28	ESRRG (ENSGFOG00000009952) #29	GPATCH2 (ENSGFOG00000009945) #30	SPATA17 (ENSGFOG00000009932) #31	RRP15 (ENSGFOG00000009921) #32	TGFB2 (ENSGFOG00000009915) #33	LYPLAL1 (ENSGFOG00000009887) #35	ENSGFOG00000009873	ENSGFOG00000009858	SLC30A10 (ENSGFOG00000009856) #36
Neognathae_c	ANCESTRAL SPECIES	5	ENSGT00940000156989	ENSGT00950000182836.b.a.b	ENSGT00390000011724 #7	ENSGT00530000064210 #8	ENSGT01030000234620.a.b.b.b #9	ENSGT00390000017528 #10	ENSGT00940000162504 #11	ENSGT00940000156376 #12	ENSGT00940000161120 #13	ENSGT00390000001374 #14	ENSGT00720000108846.a #15	ENSGT01030000234625.B.c #17	ENSGT00390000012703.a #18	ENSGT00940000157391 #19	ENSGT00940000155656 #21	ENSGT00940000154790.a.a.b #22	ENSGT00940000157082 #23	ENSGT00940000156874 #24	ENSGT00730000111187.b.b #25	ENSGT00730000111187.a.b ##25	ENSGT00730000111187.b.a #25	ENSGT00940000156560 #26	ENSGT00940000153881.a #27	ENSGT00940000158456 #28	ENSGT00940000153433.B.a.b #29	ENSGT00410000025698.a #30	ENSGT00390000011270 #31	ENSGT00390000001960 #32	ENSGT00940000157390 #33	ENSGT00940000159171 #35	ENSGT00940000159967 #36
Golden eagle	MODERN SPECIES	4	NEK2 (ENSACCG00020008781)	LPGAT1 (ENSACCG00020008768)	INTS7 (ENSACCG00020008723) #7	DTL (ENSACCG00020008681) #8	PPP2R5A (ENSACCG00020008659) #9	NENF (ENSACCG00020008643) #11	PACC1 (ENSACCG00020008621) #10	ATF3 (ENSACCG00020008599) #12	BATF3 (ENSACCG00020015065) #13	NSL1 (ENSACCG00020015051) #14	TATDN3 (ENSACCG00020015033) #15	FLVCR1 (ENSACCG00020014999) #17	VASH2 (ENSACCG00020014981) #18	ANGEL2 (ENSACCG00020014925) #19	RPS6KC1 (ENSACCG00020014884) #21	PROX1 (ENSACCG00020014825) #22	SMYD2 (ENSACCG00020014807) #23	PTPN14 (ENSACCG00020014781) #24	ENSACCG00020014753 ##25	ENSACCG00020014735 #25	KCNK2 (ENSACCG00020014721) #26	KCTD3 (ENSACCG00020014697) #27	USH2A (ENSACCG00020014624) #28	ENSACCG00020014577	ESRRG (ENSACCG00020014557) #29	GPATCH2 (ENSACCG00020014537) #30	SPATA17 (ENSACCG00020014481) #31	RRP15 (ENSACCG00020014447) #32	TGFB2 (ENSACCG00020014434) #33	LYPLAL1 (ENSACCG00020014412) #35	ENSACCG00020014375 #36
Kakapo	MODERN SPECIES	2	NEK2 (ENSSHBG00005006157)	LPGAT1 (ENSSHBG00005006133)	INTS7 (ENSSHBG00005006098) #7	DTL (ENSSHBG00005006047) #8	PPP2R5A (ENSSHBG00005006014) #9	PACC1 (ENSSHBG00005005980) #10	NENF (ENSSHBG00005005957) #11	ATF3 (ENSSHBG00005005920) #12	BATF3 (ENSSHBG00005005898) #13	ENSSHBG00005005869	TATDN3 (ENSSHBG00005005845) #15	FLVCR1 (ENSSHBG00005005819) #17	VASH2 (ENSSHBG00005005806) #18	ANGEL2 (ENSSHBG00005005783) #19	RPS6KC1 (ENSSHBG00005005756) #21	PROX1 (ENSSHBG00005005712) #22	SMYD2 (ENSSHBG00005005681) #23	PTPN14 (ENSSHBG00005005642) #24	ENSSHBG00005005611 #25	ENSSHBG00005005590 #25	KCNK2 (ENSSHBG00005005569) #26	COX7A2L (ENSSHBG00005005543)	KCNG3 (ENSSHBG00005000624)	MTA3 (ENSSHBG00005000620)	ENSSHBG00005020720	ZFP36L2 (ENSSHBG00005020717)	KCTD3 (ENSSHBG00005020715) #27	USH2A (ENSSHBG00005020696) #28	ESRRG (ENSSHBG00005020679) #29	GPATCH2 (ENSSHBG00005020675) #30	ENSSHBG00005020670
Galloanserae	ANCESTRAL SPECIES	2	ENSGT00950000182836.b.a.b	ENSGT00390000011724 #7	ENSGT00530000064210 #8	ENSGT01030000234620.a.b.b.b #9	ENSGT00940000163755	ENSGT00390000017528 #10	ENSGT00940000162504 #11	ENSGT00940000156376 #12	ENSGT00940000161120 #13	ENSGT00390000001374 #14	ENSGT00720000108846.a #15	ENSGT01030000234625.B.c #17	ENSGT00390000012703.a #18	ENSGT00940000157391 #19	ENSGT00940000155656 #21	ENSGT00940000154790.a.a.b #22	ENSGT00940000157082 #23	ENSGT00940000156874 #24	ENSGT00730000111187.a.b ##25	ENSGT00730000111187.b #25	ENSGT00940000156560 #26	ENSGT00940000153881.a #27	ENSGT00940000158456 #28	ENSGT00940000153433.B.a.b #29	ENSGT00410000025698.a #30	ENSGT00390000011270 #31	ENSGT00390000001960 #32	ENSGT00940000157390 #33	ENSGT00940000159171 #35	ENSGT00940000159967 #36	ENSGT00900000143215
Anatidae	ANCESTRAL SPECIES	11	ENSGT00390000003188	ENSGT00940000162190	ENSGT00530000063651.a	ENSGT01100000263504.b	ENSGT00530000063402.b	ENSGT00390000010056	ENSGT00940000159576	ENSGT00940000156376 #12	ENSGT00940000161120 #13	ENSGT00390000001374 #14	ENSGT00720000108846.a #15	ENSGT01030000234625.B.c #17	ENSGT00390000012703.a #18	ENSGT00940000157391 #19	ENSGT00940000155656 #21	ENSGT00940000154790.a.a.b #22	ENSGT00940000157082 #23	ENSGT00940000156874 #24	ENSGT00730000111187.a.b ##25	ENSGT00730000111187.b #25	ENSGT00940000156560 #26	ENSGT00940000153881.a #27	ENSGT00940000158456 #28	ENSGT00940000153433.B.a.b #29	ENSGT00410000025698.a #30	ENSGT00390000011270 #31	ENSGT00390000001960 #32	ENSGT00940000157390 #33	ENSGT00940000159171 #35	ENSGT00940000159967 #36	ENSGT00900000143215
Duck	MODERN SPECIES	21	LIN9 (ENSAPLG00000013627)	MIXL1 (ENSAPLG00000025166)	ACBD3 (ENSAPLG00000013267)	ENSAPLG00000024151	SDE2 (ENSAPLG00000013231)	ENSAPLG00000013195	ENSAPLG00000012312	ATF3 (ENSAPLG00000012304) #12	BATF3 (ENSAPLG00000025402) #13	NSL1 (ENSAPLG00000024285) #14	TATDN3 (ENSAPLG00000011801) #15	FLVCR1 (ENSAPLG00000011448) #17	VASH2 (ENSAPLG00000011439) #18	ANGEL2 (ENSAPLG00000011269) #19	RPS6KC1 (ENSAPLG00000011098) #21	PROX1 (ENSAPLG00000028813) #22	SMYD2 (ENSAPLG00000010622) #23	PTPN14 (ENSAPLG00000010016) #24	CENPF (ENSAPLG00000009924) #25	ENSAPLG00000023638 ##25	ENSAPLG00000026344	KCNK2 (ENSAPLG00000009845) #26	KCTD3 (ENSAPLG00000009311) #27	USH2A (ENSAPLG00000008642) #28	ESRRG (ENSAPLG00000005309) #29	GPATCH2 (ENSAPLG00000005559) #30	SPATA17 (ENSAPLG00000005733) #31	RRP15 (ENSAPLG00000005787) #32	TGFB2 (ENSAPLG00000011679) #33	ENSAPLG00000028755	LYPLAL1 (ENSAPLG00000019149) #35
Pink-footed goose	MODERN SPECIES	3	PARP1 (ENSABRG00000016116)	LIN9 (ENSABRG00000016056)	ACBD3 (ENSABRG00000016051)	ENSABRG00000016045	SDE2 (ENSABRG00000016032)	ENSABRG00000016026	ENSABRG00000016021	ATF3 (ENSABRG00000016011) #12	BATF3 (ENSABRG00000016001) #13	NSL1 (ENSABRG00000015997) #14	TATDN3 (ENSABRG00000015988) #15	FLVCR1 (ENSABRG00000015963) #17	VASH2 (ENSABRG00000015959) #18	ANGEL2 (ENSABRG00000015955) #19	RPS6KC1 (ENSABRG00000015926) #21	PROX1 (ENSABRG00000015908) #22	SMYD2 (ENSABRG00000015892) #23	PTPN14 (ENSABRG00000015879) #24	CENPF (ENSABRG00000015855) #25	ENSABRG00000015844	KCNK2 (ENSABRG00000015838) #26	KCTD3 (ENSABRG00000015832) #27	USH2A (ENSABRG00000015743) #28	ESRRG (ENSABRG00000015726) #29	GPATCH2 (ENSABRG00000015714) #30	SPATA17 (ENSABRG00000015701) #31	RRP15 (ENSABRG00000015696) #32	TGFB2 (ENSABRG00000015692) #33	LYPLAL1 (ENSABRG00000015684) #35	SLC30A10 (ENSABRG00000015682) #36	ENSABRG00000015674
Phasianidae	ANCESTRAL SPECIES	3	ENSGT00950000182836.b.a.b	ENSGT00390000011724 #7	ENSGT00530000064210 #8	ENSGT01030000234620.a.b.b.b #9	ENSGT00940000163755	ENSGT00390000017528 #10	ENSGT00940000162504 #11	ENSGT00940000156376 #12	ENSGT00940000161120 #13	ENSGT00390000001374 #14	ENSGT00720000108846.a #15	ENSGT01030000234625.B.c #17	ENSGT00390000012703.a #18	ENSGT00940000157391 #19	ENSGT00940000155656 #21	ENSGT00940000154790.a.a.b #22	ENSGT00940000157082 #23	ENSGT00940000156874 #24	ENSGT00730000111187.b #25	ENSGT00940000156560 #26	ENSGT00940000153881.a #27	ENSGT00940000158456 #28	ENSGT00940000153433.B.a.b #29	ENSGT00410000025698.a #30	ENSGT00390000011270 #31	ENSGT00390000001960 #32	ENSGT00940000157390 #33	ENSGT00940000159171 #35	ENSGT00940000159967 #36	ENSGT00550000074815 #37	ENSGT00940000157359
Japanese quail	MODERN SPECIES	21	LPGAT1 (ENSCJPG00005007486)	INTS7 (ENSCJPG00005007485) #7	DTL (ENSCJPG00005007484) #8	ENSCJPG00005007482	PPP2R5A (ENSCJPG00005007473) #9	PACC1 (ENSCJPG00005007471) #10	NENF (ENSCJPG00005007470) #11	ATF3 (ENSCJPG00005007468) #12	BATF3 (ENSCJPG00005007466) #13	NSL1 (ENSCJPG00005007465) #14	TATDN3 (ENSCJPG00005007464) #15	FLVCR1 (ENSCJPG00005007463) #17	VASH2 (ENSCJPG00005007462) #18	ANGEL2 (ENSCJPG00005007461) #19	RPS6KC1 (ENSCJPG00005007460) #21	PROX1 (ENSCJPG00005007447) #22	SMYD2 (ENSCJPG00005007445) #23	PTPN14 (ENSCJPG00005007433) #24	CENPF (ENSCJPG00005007431) #25	ENSCJPG00005007429	KCNK2 (ENSCJPG00005007426) #26	KCTD3 (ENSCJPG00005007409) #27	USH2A (ENSCJPG00005007395) #28	ESRRG (ENSCJPG00005007364) #29	GPATCH2 (ENSCJPG00005007322) #30	SPATA17 (ENSCJPG00005007288) #31	RRP15 (ENSCJPG00005007256) #32	TGFB2 (ENSCJPG00005007255) #33	LYPLAL1 (ENSCJPG00005007209) #35	SLC30A10 (ENSCJPG00005007191) #36	EPRS1 (ENSCJPG00005007189) #37
Phasianidae_b	ANCESTRAL SPECIES	2	ENSGT00940000156989	ENSGT00950000182836.b.a.b	ENSGT00390000011724 #7	ENSGT00530000064210 #8	ENSGT01030000234620.a.b.b.b #9	ENSGT00390000017528 #10	ENSGT00940000163755	ENSGT00940000156376 #12	ENSGT00940000161120 #13	ENSGT00390000001374 #14	ENSGT00720000108846.a #15	ENSGT01030000234625.B.c #17	ENSGT00390000012703.a #18	ENSGT00940000157391 #19	ENSGT00940000155656 #21	ENSGT00940000154790.a.a.b #22	ENSGT00940000157082 #23	ENSGT00940000156874 #24	ENSGT00730000111187.b #25	ENSGT00940000156560 #26	ENSGT00940000153881.a #27	ENSGT00940000158456 #28	ENSGT00940000153433.B.a.b #29	ENSGT00410000025698.a #30	ENSGT00390000011270 #31	ENSGT00390000001960 #32	ENSGT00940000157390 #33	ENSGT00940000159171 #35	ENSGT00940000159967 #36	ENSGT00550000074815 #37	ENSGT00940000157359
Turkey	MODERN SPECIES	11	RD3 (ENSMGAG00000009834)	NEK2 (ENSMGAG00000009820)	LPGAT1 (ENSMGAG00000009816)	INTS7 (ENSMGAG00000009791) #7	DTL (ENSMGAG00000009764) #8	PPP2R5A (ENSMGAG00000009729) #9	ENSMGAG00000009712	PACC1 (ENSMGAG00000009719) #10	ATF3 (ENSMGAG00000009708) #12	BATF3 (ENSMGAG00000020333) #13	NSL1 (ENSMGAG00000016643) #14	FLVCR1 (ENSMGAG00000009696) #17	VASH2 (ENSMGAG00000009679) #18	ANGEL2 (ENSMGAG00000009662) #19	ENSMGAG00000022837 #21	PROX1 (ENSMGAG00000009635) #22	SMYD2 (ENSMGAG00000009603) #23	PTPN14 (ENSMGAG00000009571) #24	CENPF (ENSMGAG00000009530) #25	ENSMGAG00000022333 #26	KCTD3 (ENSMGAG00000009514) #27	ENSMGAG00000019221	ESRRG (ENSMGAG00000009436) #29	GPATCH2 (ENSMGAG00000009428) #30	SPATA17 (ENSMGAG00000009410) #31	RRP15 (ENSMGAG00000009399) #32	TGFB2 (ENSMGAG00000009386) #33	LYPLAL1 (ENSMGAG00000009278) #35	SLC30A10 (ENSMGAG00000009270) #36	EPRS1 (ENSMGAG00000009215) #37	BPNT1 (ENSMGAG00000009194)
Chicken	MODERN SPECIES	22	ENSGALG00010020618	LPGAT1 (ENSGALG00010020611)	INTS7 (ENSGALG00010020590) #7	DTL (ENSGALG00010020574) #8	PPP2R5A (ENSGALG00010019534) #9	NENF (ENSGALG00010019515)	TMEM206 (ENSGALG00010019403) #10	ATF3 (ENSGALG00010019307) #12	BATF3 (ENSGALG00010019285) #13	NSL1 (ENSGALG00010019268) #14	TATDN3 (ENSGALG00010019252) #15	FLVCR1 (ENSGALG00010021615) #17	VASH2 (ENSGALG00010019221) #18	ANGEL2 (ENSGALG00010019183) #19	RPS6KC1 (ENSGALG00010019130) #21	PROX1 (ENSGALG00010020704) #22	SMYD2 (ENSGALG00010020675) #23	PTPN14 (ENSGALG00010020640) #24	CENPF (ENSGALG00010019029) #25	KCNK2 (ENSGALG00010019020) #26	SHKBP1 (ENSGALG00010016422) #27	USH2A (ENSGALG00010016328) #28	ESRRG (ENSGALG00010016404) #29	GPATCH2 (ENSGALG00010016236) #30	SPATA17 (ENSGALG00010016215) #31	RRP15 (ENSGALG00010016141) #32	TGFB2 (ENSGALG00010019470) #33	LYPLAL1 (ENSGALG00010017580) #35	ENSGALG00010017573	SLC30A10 (ENSGALG00010017562) #36	EPRS (ENSGALG00010016118) #37
African ostrich	MODERN SPECIES	401	LPGAT1 (ENSSCUG00000006696)	INTS7 (ENSSCUG00000006722) #7	DTL (ENSSCUG00000006750) #8	PPP2R5A (ENSSCUG00000006769) #9	PACC1 (ENSSCUG00000006803) #10	ENSSCUG00000006808	ATF3 (ENSSCUG00000006812) #12	BATF3 (ENSSCUG00000006815) #13	NSL1 (ENSSCUG00000006816) #14	TATDN3 (ENSSCUG00000006817) #15	ENSSCUG00000006819	FLVCR1 (ENSSCUG00000006821) #17	VASH2 (ENSSCUG00000006823) #18	ANGEL2 (ENSSCUG00000006827) #19	RPS6KC1 (ENSSCUG00000006832) #21	PROX1 (ENSSCUG00000006855) #22	SMYD2 (ENSSCUG00000006860) #23	PTPN14 (ENSSCUG00000006871) #24	CENPF (ENSSCUG00000006877) #25	ENSSCUG00000006881	KCNK2 (ENSSCUG00000006885) #26	KCTD3 (ENSSCUG00000006892) #27	USH2A (ENSSCUG00000006901) #28	ESRRG (ENSSCUG00000006908) #29	GPATCH2 (ENSSCUG00000006916) #30	SPATA17 (ENSSCUG00000006922) #31	RRP15 (ENSSCUG00000006928) #32	TGFB2 (ENSSCUG00000006936) #33	LYPLAL1 (ENSSCUG00000006942) #35	ENSSCUG00000006947 #36	ENSSCUG00000006949 #36
Australian saltwater crocodile	MODERN SPECIES	60	INTS7 (ENSCPRG00005000314) #7	DTL (ENSCPRG00005000390) #8	PPP2R5A (ENSCPRG00005000419) #9	PACC1 (ENSCPRG00005000440) #10	NENF (ENSCPRG00005000447) #11	ATF3 (ENSCPRG00005000494) #12	BATF3 (ENSCPRG00005000509) #13	NSL1 (ENSCPRG00005000512) #14	TATDN3 (ENSCPRG00005000521) #15	ENSCPRG00005000527	FLVCR1 (ENSCPRG00005000556) #17	VASH2 (ENSCPRG00005000563) #18	ANGEL2 (ENSCPRG00005000574) #19	ENSCPRG00005000581 #21	ENSCPRG00005000600 #21	PROX1 (ENSCPRG00005000635) #22	SMYD2 (ENSCPRG00005000681) #23	PTPN14 (ENSCPRG00005000689) #24	CENPF (ENSCPRG00005000744) #25	KCNK2 (ENSCPRG00005000811) #26	KCTD3 (ENSCPRG00005000843) #27	USH2A (ENSCPRG00005000968) #28	ESRRG (ENSCPRG00005001047) #29	GPATCH2 (ENSCPRG00005001126) #30	SPATA17 (ENSCPRG00005001133) #31	RRP15 (ENSCPRG00005001178) #32	TGFB2 (ENSCPRG00005001180) #33	LYPLAL1 (ENSCPRG00005001252) #35	SLC30A10 (ENSCPRG00005001300) #36	EPRS1 (ENSCPRG00005001357) #37	BPNT1 (ENSCPRG00005001695)
Anura	ANCESTRAL SPECIES	21	ENSGT00950000182836.b.a.b	ENSGT00390000011724 #7	ENSGT00530000064210 #8	ENSGT01030000234620.a.b.b.b #9	ENSGT00390000017528 #10	ENSGT00940000162504 #11	ENSGT00940000156376 #12	ENSGT00940000161120 #13	ENSGT00390000001374 #14	ENSGT00720000108846.a #15	ENSGT00720000108846.b ##15	ENSGT01030000234625.B.c #17	ENSGT00390000012703.a #18	ENSGT00940000157391 #19	ENSGT00940000155656 #21	ENSGT00940000154790.a.a.b #22	ENSGT00940000157082 #23	ENSGT00940000156874 #24	ENSGT00730000111187.b #25	ENSGT00940000156560 #26	ENSGT00940000153881.a #27	ENSGT00940000158456 #28	ENSGT00940000170735	ENSGT00940000153433.B.a.b #29	ENSGT00410000025698.a #30	ENSGT00390000011270 #31	ENSGT00390000001960 #32	ENSGT00940000157390 #33	ENSGT00940000159171 #35	ENSGT00940000159967.l #36	ENSGT00550000074815 #37
Leishan spiny toad	MODERN SPECIES	7	PACC1 (ENSLLEG00000009187) #10	ENSLLEG00000009137	NENF (ENSLLEG00000009097) #11	ENSLLEG00000009079	ATF3 (ENSLLEG00000009021) #12	BATF3 (ENSLLEG00000008988) #13	NSL1 (ENSLLEG00000008933) #14	ENSLLEG00000008631 #15	ENSLLEG00000008543 ##15	FLVCR1 (ENSLLEG00000008403) #17	VASH2 (ENSLLEG00000008330) #18	ANGEL2 (ENSLLEG00000008242) #19	ENSLLEG00000008211	RPS6KC1 (ENSLLEG00000007837) #21	ENSLLEG00000007772	PROX1 (ENSLLEG00000007671) #22	ENSLLEG00000007647	SMYD2 (ENSLLEG00000007615) #23	ENSLLEG00000007591	PTPN14 (ENSLLEG00000007513) #24	ENSLLEG00000007470 #25	ENSLLEG00000007428	KCNK2 (ENSLLEG00000007336) #26	ENSLLEG00000007313	KCTD3 (ENSLLEG00000006919) #27	ENSLLEG00000006860	ENSLLEG00000006848	ESRRG (ENSLLEG00000006417) #29	ENSLLEG00000006319	GPATCH2 (ENSLLEG00000006257) #30	SPATA17 (ENSLLEG00000006091) #31
Frog	MODERN SPECIES	5	ENSXETG00000048053	ppp2r5a (ENSXETG00000014382) #9	ENSXETG00000044881	nenf (ENSXETG00000014379) #11	pacc1 (ENSXETG00000014356) #10	ENSXETG00000046226	atf3 (ENSXETG00000044220) #12	BATF3 (ENSXETG00000043512) #13	nsl1 (ENSXETG00000030886) #14	tatdn3 (ENSXETG00000042429) #15	ENSXETG00000031526 ##15	flvcr1 (ENSXETG00000014366) #17	vash2 (ENSXETG00000014363) #18	angel2 (ENSXETG00000014357) #19	rps6kc1 (ENSXETG00000014360) #21	prox1 (ENSXETG00000023176) #22	smyd2 (ENSXETG00000036934) #23	ptpn14 (ENSXETG00000023157) #24	ENSXETG00000048873	cenpf (ENSXETG00000023124) #25	ENSXETG00000036776	kcnk2 (ENSXETG00000023120) #26	ENSXETG00000042695	kctd3 (ENSXETG00000020907) #27	USH2A (ENSXETG00000020925) #28	ENSXETG00000044447	ENSXETG00000034424	esrrg (ENSXETG00000020932) #29	gpatch2 (ENSXETG00000021194) #30	spata17 (ENSXETG00000037992) #31	ENSXETG00000038118
Coelacanth	MODERN SPECIES	682														ENSLACG00000014890	ENSLACG00000014838	PROX1 (ENSLACG00000013691) #22	SMYD2 (ENSLACG00000012213) #23	PTPN14 (ENSLACG00000011263) #24	CENPF (ENSLACG00000007875) #25	KCNK2 (ENSLACG00000001371) #26
Actinopterygii	ANCESTRAL SPECIES	68	ENSGT00390000011724 #7	ENSGT00530000064210 #8	ENSGT01030000234620.a.b.b.b #9	ENSGT00390000017528 #10	ENSGT00940000162504 #11	ENSGT00940000156376 #12	ENSGT00940000161120 #13	ENSGT00390000001374 #14	ENSGT00720000108846.a #15	ENSGT00720000108846.b ##15	ENSGT00390000018676	ENSGT01030000234625.B.c #17	ENSGT00390000012703.a #18	ENSGT00940000157391 #19	ENSGT00940000155656 #21	ENSGT00940000154790.a.a.b #22	ENSGT00940000157082 #23	ENSGT00940000156874 #24	ENSGT00730000111187.a.b ##25	ENSGT00940000156560 #26	ENSGT00940000153881.a #27	ENSGT00940000165654	ENSGT00940000158456 #28	ENSGT00940000153433.B.a.b #29	ENSGT00410000025698.a #30	ENSGT00390000011270 #31
Neopterygii	ANCESTRAL SPECIES	165									ENSGT00940000166718	ENSGT00940000157133	ENSGT00390000002143.b.a	ENSGT00390000016811	ENSGT00940000164041	ENSGT00940000156557	ENSGT00940000155656 #21	ENSGT00940000154790.a.a.b #22	ENSGT00940000157082 #23	ENSGT00940000156874 #24	ENSGT00730000111187.a.b ##25	ENSGT00940000156560 #26	ENSGT00940000166224	ENSGT00940000165510	ENSGT00950000182902.a.d	ENSGT00940000158680	ENSGT00390000016034	ENSGT00940000158349	ENSGT01070000253766.A.a.a.b	ENSGT00510000046470.a.b	ENSGT00530000063528.A.a	ENSGT00940000180091	ENSGT00940000163305.b
Spotted gar	MODERN SPECIES	647	pdia6 (ENSLOCG00000016663)	kcnf1a (ENSLOCG00000018004)	ENSLOCG00000018005	si:dkey-18j18.3 (ENSLOCG00000016665)	ENSLOCG00000018006	rock2b (ENSLOCG00000016666)	ENSLOCG00000016669	lpin1a (ENSLOCG00000016673)	ENSLOCG00000016676	dnajc27 (ENSLOCG00000016679)	EFR3B (ENSLOCG00000016682)	pomcb (ENSLOCG00000016684)	ENSLOCG00000016685	snx9a (ENSLOCG00000016687)	rps6kc1 (ENSLOCG00000016691) #21	prox1a (ENSLOCG00000016698) #22	smyd2a (ENSLOCG00000016700) #23	PTPN14 (ENSLOCG00000016705) #24	CENPF (ENSLOCG00000016707) ##25	ephx2 (ENSLOCG00000016711)	ENSLOCG00000016715	ENSLOCG00000016722	ENSLOCG00000016724	plaat1l (ENSLOCG00000016725)	ENSLOCG00000016728	ENSLOCG00000016731	eif2b4 (ENSLOCG00000016732)	snx17 (ENSLOCG00000016735)	znf513a (ENSLOCG00000016739)	ENSLOCG00000016741	hbl4 (ENSLOCG00000016745)
Osteoglossocephalai	ANCESTRAL SPECIES	170				ENSGT01030000234555.a.b.f.b	ENSGT00950000183114.a.a	ENSGT00940000166718	ENSGT00940000157133	ENSGT00390000002143.b.a	ENSGT00390000016811.h	ENSGT00390000002143.b.b	ENSGT00390000016811.g	ENSGT00940000164041	ENSGT00940000156557.h	ENSGT00530000063085.A.a	ENSGT00940000155656 #21	ENSGT00940000154790.a.a.b #22	ENSGT00940000157082 #23	ENSGT00940000156874 #24	ENSGT00940000156560.h #26	ENSGT00940000165510	ENSGT00950000182902.a.d	ENSGT00940000165866	ENSGT00730000111187.a.b ##25	ENSGT00940000156560.g #26	ENSGT00940000166224	ENSGT00940000158680	ENSGT01070000253766.A.a.a.b.a.a	ENSGT00390000016034	ENSGT00940000158349	ENSGT01070000253766.A.a.a.b.a.b	ENSGT00510000046470.a.b
Osteoglossiformes	DUPLICATION
Osteoglossiformes	ANCESTRAL SPECIES	439															ENSGT00940000156557.g	ENSGT00940000154790.a.a.b.c #22	ENSGT00940000156874.c.a #24	ENSGT00730000111187.a.b ##25	ENSGT00940000156560.g #26	ENSGT00940000166224	ENSGT00940000158680.j.a	ENSGT00940000158680.j.b
Asian bonytongue	MODERN SPECIES	6	SH3YL1 (ENSSFOG00015016778)	ENSSFOG00015024515	cmtr1 (ENSSFOG00015016868)	NHSL1 (ENSSFOG00015016946)	ccdc28a (ENSSFOG00015016999)	ECT2L (ENSSFOG00015017030)	zgc:162964 (ENSSFOG00015017080)	lin9 (ENSSFOG00015017101)	XDH (ENSSFOG00015017156)	ENSSFOG00015017449	dnajc27 (ENSSFOG00015025414)	EFR3B (ENSSFOG00015017545)	pomca (ENSSFOG00015017610)	ENSSFOG00015017694	snx9a (ENSSFOG00015017714)	prox1a (ENSSFOG00015017766) #22	smyd2a (ENSSFOG00015017786) #23	ENSSFOG00015024296 #24	ENSSFOG00015017813 #24	ENSSFOG00015017829 #24	CENPF (ENSSFOG00015017861) ##25	KCNK2 (ENSSFOG00015017981) #26	ENSSFOG00015029860	CTSB (ENSSFOG00015018007)	CTSB (ENSSFOG00015018040)	ENSSFOG00015026806	ENSSFOG00015018084	tram2 (ENSSFOG00015018111)	ENSSFOG00015025221	gcfc2 (ENSSFOG00015018151)	ITSN2 (ENSSFOG00015018180)
P. kingsleyae	MODERN SPECIES	45	rab11fip4b (ENSPKIG00000004568)	ENSPKIG00000004530	trim25 (ENSPKIG00000004447)	dgke (ENSPKIG00000004381)	cbx8b (ENSPKIG00000004344)	cbx4 (ENSPKIG00000004326)	tbc1d16 (ENSPKIG00000004277)	CARD14 (ENSPKIG00000004238)	ccdc40 (ENSPKIG00000004181)	ENSPKIG00000004153	ENSPKIG00000004139	pomca (ENSPKIG00000004128)	ENSPKIG00000004100	snx9a (ENSPKIG00000004006)	ENSPKIG00000003936	prox1a (ENSPKIG00000003913) #22	smyd2a (ENSPKIG00000003870) #23	ENSPKIG00000003846 #24	ENSPKIG00000003818 #24	CENPF (ENSPKIG00000003704) ##25	ENSPKIG00000003649	ENSPKIG00000003630
Osteoglossiformes	ANCESTRAL SPECIES	4	ENSGT00390000004915.b	ENSGT00390000017888	ENSGT00530000063651.a.a.a	ENSGT00940000162190	ENSGT00390000003188.c	ENSGT01030000234555.a.b.f.a	ENSGT00940000156058	ENSGT00940000157133.h	ENSGT00390000002143.b.a.z	ENSGT00390000016811.h	ENSGT00390000016811.g	ENSGT00940000164041	ENSGT00940000156557.h	ENSGT00530000063085.A.a	ENSGT00940000155656.s #21	ENSGT00940000154790.a.a.b.d #22	ENSGT00940000157082 #23	ENSGT00940000156874.d #24	ENSGT00940000156560.h #26	ENSGT00940000165510	ENSGT00950000182902.a.d	ENSGT00940000165866	ENSGT00940000158680.i	ENSGT00390000016034	ENSGT00940000158349.l	ENSGT01070000253766.A.a.a.b.a.b	ENSGT00510000046470.a.b.d	ENSGT00530000063528.A.a	ENSGT00940000180091	ENSGT00940000154096.b.b.a	ENSGT00390000009415
P. kingsleyae	MODERN SPECIES	83	ENSPKIG00000006329	ENSPKIG00000006314	NHSL1 (ENSPKIG00000006273)	acbd3 (ENSPKIG00000006236)	mixl1 (ENSPKIG00000006218)	lin9 (ENSPKIG00000006192)	ENSPKIG00000006167	parp1 (ENSPKIG00000006039)	DNAJC27 (ENSPKIG00000005931)	EFR3B (ENSPKIG00000005768)	pomcb (ENSPKIG00000005704)	ENSPKIG00000005689	SNX9 (ENSPKIG00000005581)	ENSPKIG00000005536 #21	RPS6KC1 (ENSPKIG00000005516) #21	prox1a (ENSPKIG00000005483) #22	SMYD2 (ENSPKIG00000005433) #23	PTPN14 (ENSPKIG00000005280) #24	kcnk2b (ENSPKIG00000005197) #26	ENSPKIG00000005139	ABHD1 (ENSPKIG00000005093)	ENSPKIG00000005034	ENSPKIG00000004948	ctsba (ENSPKIG00000004874)	fdft1 (ENSPKIG00000004839)	gata4 (ENSPKIG00000004796)	xkr5a (ENSPKIG00000004777)	ENSPKIG00000004766	efhc1 (ENSPKIG00000004738)	ENSPKIG00000004721	eva1a (ENSPKIG00000004713)
Asian bonytongue	MODERN SPECIES		KIF25 (ENSSFOG00015019835)	hebp2 (ENSSFOG00015019865)	NHSL1 (ENSSFOG00015019880)	acbd3 (ENSSFOG00015019907)	mixl1 (ENSSFOG00015029811)	lin9 (ENSSFOG00015019943)	ENSSFOG00015020065	parp1 (ENSSFOG00015020017)	DNAJC27 (ENSSFOG00015020074)	EFR3B (ENSSFOG00015020097)	pomcb (ENSSFOG00015020172)	ENSSFOG00015020337	SNX9 (ENSSFOG00015020430)	ENSSFOG00015020491	rps6kc1 (ENSSFOG00015020535) #21	prox1a (ENSSFOG00015020586) #22	SMYD2 (ENSSFOG00015020598) #23	PTPN14 (ENSSFOG00015030086) #24	kcnk2b (ENSSFOG00015020640) #26	ENSSFOG00015020648	ABHD1 (ENSSFOG00015000067)	ENSSFOG00015030051	ENSSFOG00015000074	ctsba (ENSSFOG00015000111)	fdft1 (ENSSFOG00015000186)	gata4 (ENSSFOG00015000242)	xkr5a (ENSSFOG00015000277)	tram2 (ENSSFOG00015000283)	efhc1 (ENSSFOG00015000342)	ENSSFOG00015000355	ENSSFOG00015029839
Clupeocephala	ANCESTRAL SPECIES	128	ENSGT00990000204448	ENSGT00500000044870.a	ENSGT00940000158839	ENSGT00530000063651.a	ENSGT00940000162190	ENSGT00390000003188	ENSGT00940000156058	ENSGT01030000234555.a.b.f.a	ENSGT00940000167206	ENSGT00390000002143.b.a	ENSGT00390000016811.h	ENSGT00940000164041.b.a	ENSGT00940000156557.h	ENSGT00530000063085.A.a	ENSGT00940000155656 #21	ENSGT00940000154790.a.a.b #22	ENSGT00940000157082 #23	ENSGT00940000156874 #24	ENSGT00940000156560.h #26	ENSGT00940000165510	ENSGT00950000182902.a.d	ENSGT00940000165866	ENSGT00940000166128	ENSGT00390000016034	ENSGT00940000158349	ENSGT00940000175851	ENSGT00940000155141.w.a	ENSGT00510000047616.a.b
Euteleosteomorpha	ANCESTRAL SPECIES	81	ENSGT00940000162166	ENSGT00940000160412.a	ENSGT00950000182963.a.a	ENSGT00530000063651.a	ENSGT00940000162190	ENSGT00390000003188	ENSGT00940000156058	ENSGT01030000234555.a.b.f.a	ENSGT00940000167206	ENSGT00390000002143.b.a	ENSGT00390000016811.h	ENSGT00940000164041.b.a	ENSGT00940000156557.h	ENSGT00530000063085.A.a	ENSGT00940000155656 #21	ENSGT00940000154790.a.a.b #22	ENSGT00940000157082 #23	ENSGT00940000156874 #24	ENSGT00940000156560.h #26	ENSGT00940000165510	ENSGT00950000182902.a.d	ENSGT00940000166128	ENSGT00390000016034	ENSGT00940000158349	ENSGT00940000155141.w.a	ENSGT00510000047616.a.b	ENSGT00510000047616.a.a
Protacanthopterygii	ANCESTRAL SPECIES	22	ENSGT00940000157172	ENSGT00390000010210	ENSGT00940000162166	ENSGT00940000160412.a	ENSGT00950000182963.a.a.d	ENSGT00530000063651.a	ENSGT00940000162190	ENSGT00390000003188	ENSGT00940000156058	ENSGT01030000234555.a.b.f.a	ENSGT00940000167206	ENSGT00940000164041.b.a	ENSGT00940000156557.h	ENSGT00530000063085.A.a	ENSGT00940000155656 #21	ENSGT00940000154790.a.a.b #22	ENSGT00940000157082 #23	ENSGT00940000156874.n #24	ENSGT00940000156560.h #26	ENSGT00940000165510	ENSGT00950000182902.a.d	ENSGT00940000165866	ENSGT00940000163581.f.a	ENSGT00940000166128	ENSGT00390000016034	ENSGT00940000158349	ENSGT00940000155141.w.a	ENSGT00510000047616.a.b	ENSGT00510000047616.a.a
Salmoninae	DUPLICATION
Salmoninae	ANCESTRAL SPECIES	56	ENSGT00940000157172	ENSGT00390000010210	ENSGT00940000162166	ENSGT00940000160412.a	ENSGT00950000182963.a.a.d	ENSGT00530000063651.a.d	ENSGT00940000162190	ENSGT00390000003188.j	ENSGT00940000156058.g.a	ENSGT01030000234555.a.b.f.a	ENSGT00940000167206	ENSGT00940000164041.b.a	ENSGT00940000156557.h	ENSGT00530000063085.A.a.c	ENSGT00940000155656 #21	ENSGT00940000154790.a.a.b.e #22	ENSGT00940000157082 #23	ENSGT00940000156874.n.b.a #24	ENSGT00940000156560.h #26	ENSGT00940000165510.d	ENSGT00950000182902.a.d	ENSGT00940000165866.p.a.a.a	ENSGT00940000166128	ENSGT00390000016034	ENSGT00940000158349	ENSGT00940000155141.w.a.h	ENSGT00510000047616.a.b	ENSGT00510000047616.a.a	ENSGT01030000234912.d	ENSGT00940000157815.b	ENSGT00390000000358.z.b
Huchen	MODERN SPECIES	5086																prox1a (ENSHHUG00000050989) #22
Salmoninae_a	ANCESTRAL SPECIES	30	ENSGT00390000017888	ENSGT00940000157172	ENSGT00390000010210	ENSGT00940000162166	ENSGT00940000160412.a	ENSGT00950000182963.a.a.d	ENSGT00530000063651.a.d	ENSGT00940000162190	ENSGT00390000003188.j	ENSGT00940000156058.g.a	ENSGT01030000234555.a.b.f.a	ENSGT00940000164041.b.a	ENSGT00940000156557.h	ENSGT00530000063085.A.a.c	ENSGT00940000155656 #21	ENSGT00940000154790.a.a.b.e #22	ENSGT00940000157082 #23	ENSGT00940000156874.n.b.a #24	ENSGT00940000156560.h #26	ENSGT00940000165510.d	ENSGT00950000182902.a.d	ENSGT00940000165866.o	ENSGT00940000165866.p.a.a.b	ENSGT00940000165866.p.a.a.a	ENSGT00940000166128	ENSGT00390000016034	ENSGT00940000158349	ENSGT00940000155141.w.a.h	ENSGT00510000047616.a.b	ENSGT00510000047616.a.a	ENSGT01030000234912.d
Oncorhynchus	ANCESTRAL SPECIES	30	ENSGT00940000157172	ENSGT00390000010210	ENSGT00940000162166	ENSGT00940000160412.a	ENSGT00950000182963.a.a.d	ENSGT00530000063651.a.d	ENSGT00940000162190	ENSGT00390000003188.j	ENSGT00940000156058.g.a	ENSGT01030000234555.a.b.f.a	ENSGT00390000016811.h	ENSGT00940000164041.b.a	ENSGT00940000156557.h	ENSGT00530000063085.A.a.c	ENSGT00940000155656 #21	ENSGT00940000154790.a.a.b.e #22	ENSGT00940000157082 #23	ENSGT00940000156874.n.b.a #24	ENSGT00940000156560.h #26	ENSGT00940000165510.d	ENSGT00950000182902.a.d	ENSGT00940000165866.p.a.a.b	ENSGT00940000165866.p.a.a.a	ENSGT00940000166128	ENSGT00390000016034	ENSGT00940000158349	ENSGT00940000155141.w.a.h	ENSGT00510000047616.a.b	ENSGT00510000047616.a.a	ENSGT01030000234912.d	ENSGT00940000157815.b
Rainbow trout	MODERN SPECIES	25	acbd3 (ENSOMYG00000023585)	mixl1 (ENSOMYG00000023601)	lin9 (ENSOMYG00000023642)	ENSOMYG00000024267	parp1 (ENSOMYG00000023952)	ENSOMYG00000069636	ENSOMYG00000060176	ENSOMYG00000025023	pomcb (ENSOMYG00000027563)	ENSOMYG00000076836	ENSOMYG00000050139	ENSOMYG00000027905	ENSOMYG00000029111	RPS6KC1 (ENSOMYG00000029129) #21	ENSOMYG00000029151	PROX1 (ENSOMYG00000029170) #22	SMYD2 (ENSOMYG00000019127) #23	PTPN14 (ENSOMYG00000019113) #24	KCNK2 (ENSOMYG00000019093) #26	ENSOMYG00000019083	ENSOMYG00000018842	ENSOMYG00000018790	ENSOMYG00000018767	ctsbb (ENSOMYG00000018692)	ENSOMYG00000018653	ENSOMYG00000054609	ENSOMYG00000057473	gata4 (ENSOMYG00000018611)	ENSOMYG00000018498	ENSOMYG00000018474	ENSOMYG00000018448
Oncorhynchus_a	ANCESTRAL SPECIES	35	ENSGT00940000157172	ENSGT00390000010210	ENSGT00940000162166	ENSGT00940000160412.a	ENSGT00950000182963.a.a.d	ENSGT00530000063651.a.d	ENSGT00940000162190	ENSGT00390000003188.j	ENSGT00940000156058.g.a	ENSGT01030000234555.a.b.f.a	ENSGT00390000016811.h	ENSGT00940000164041.b.a	ENSGT00940000156557.h	ENSGT00530000063085.A.a.c	ENSGT00940000155656 #21	ENSGT00940000154790.a.a.b.e #22	ENSGT01010000229482	ENSGT00940000157082 #23	ENSGT00940000156874.n.b.a #24	ENSGT00940000156560.h #26	ENSGT00940000165510.d	ENSGT00950000182902.a.d	ENSGT00940000165866.p.a.a.a	ENSGT00940000166128	ENSGT00390000016034	ENSGT00940000158349	ENSGT00940000155141.w.a.h	ENSGT00510000047616.a.b	ENSGT00940000153524.d.a.b	ENSGT00510000047616.a.a	ENSGT00940000157815.b
Chinook salmon	MODERN SPECIES	658																prox1a (ENSOTSG00005017148) #22
Coho salmon	MODERN SPECIES	13	KIF25 (ENSOKIG00005020392)	hebp2 (ENSOKIG00005020383)	ENSOKIG00005020379	NHSL1 (ENSOKIG00005020318)	acbd3 (ENSOKIG00005020270)	mixl1 (ENSOKIG00005020267)	lin9 (ENSOKIG00005020195)	ENSOKIG00005020186	parp1 (ENSOKIG00005019712)	EFR3B (ENSOKIG00005017133)	pomcb (ENSOKIG00005017014)	ENSOKIG00005017008	SNX9 (ENSOKIG00005016430)	ENSOKIG00005016382	rps6kc1 (ENSOKIG00005016337) #21	prox1a (ENSOKIG00005016323) #22	ENSOKIG00005016316	SMYD2 (ENSOKIG00005016190) #23	PTPN14 (ENSOKIG00005016154) #24	KCNK2 (ENSOKIG00005016144) #26	ENSOKIG00005016109	ABHD1 (ENSOKIG00005016020)	ctsbb (ENSOKIG00005015891)	fdft1 (ENSOKIG00005015873)	gata4 (ENSOKIG00005015867)	NCOA7 (ENSOKIG00005015822)	ENSOKIG00005015791	ENSOKIG00005015776	ENSOKIG00005015769	ENSOKIG00005015734	RSPO3 (ENSOKIG00005015725)
Salmo	ANCESTRAL SPECIES	12	ENSGT00940000157172	ENSGT00390000010210	ENSGT00940000162166	ENSGT00940000160412.a	ENSGT00950000182963.a.a.d	ENSGT00530000063651.a.d	ENSGT00940000162190	ENSGT00390000003188.j	ENSGT00940000156058.g.a	ENSGT01030000234555.a.b.f.a	ENSGT00390000016811.h	ENSGT00940000164041.b.a	ENSGT00940000156557.h	ENSGT00530000063085.A.a.c	ENSGT00940000155656 #21	ENSGT00940000154790.a.a.b.e #22	ENSGT00940000157082 #23	ENSGT00940000156874.n.b.a #24	ENSGT00940000156560.h #26	ENSGT00940000165510.d	ENSGT00950000182902.a.d	ENSGT00940000165866.o	ENSGT00940000165866.p.a.a.b	ENSGT00940000165866.p.a.a.a	ENSGT00940000166128	ENSGT00390000016034	ENSGT00940000158349	ENSGT00940000155141.w.a.h	ENSGT00510000047616.a.b	ENSGT00510000047616.a.a	ENSGT00940000157815.b
Atlantic salmon	MODERN SPECIES	25	cmtr1 (ENSSSAG00000039951)	kif25 (ENSSSAG00000043108)	hebp2 (ENSSSAG00000093847)	ENSSSAG00000097334	ENSSSAG00000043145	acbd3 (ENSSSAG00000104054)	mixl1 (ENSSSAG00000043253)	lin9 (ENSSSAG00000043294)	ENSSSAG00000052881	parp1 (ENSSSAG00000043582)	ENSSSAG00000052938	ENSSSAG00000053140	ENSSSAG00000053430	ENSSSAG00000061632	RPS6KC1 (ENSSSAG00000008200) #21	PROX1 (ENSSSAG00000008215) #22	smyd2 (ENSSSAG00000008118) #23	PTPN14 (ENSSSAG00000105131) #24	KCNK2 (ENSSSAG00000008039) #26	ENSSSAG00000084223	ENSSSAG00000007980	ENSSSAG00000102925	ENSSSAG00000094846	ctsb (ENSSSAG00000007868)	fdft1 (ENSSSAG00000007833)	gata4 (ENSSSAG00000007823)	ENSSSAG00000101655	ENSSSAG00000108652	hint3 (ENSSSAG00000007801)	ENSSSAG00000089147	RSPO3 (ENSSSAG00000097178)
River trout	MODERN SPECIES		ccdc167 (ENSSTUG00000026436)	ENSSTUG00000026457	hebp2 (ENSSTUG00000026479)	NHSL1 (ENSSTUG00000026506)	acbd3 (ENSSTUG00000026572)	mixl1 (ENSSTUG00000026624)	lin9 (ENSSTUG00000026632)	parp1 (ENSSTUG00000026695)	ENSSTUG00000027108	EFR3B (ENSSTUG00000027175)	pomcb (ENSSTUG00000029036)	ENSSTUG00000000055	SNX9 (ENSSTUG00000000101)	ENSSTUG00000000720	rps6kc1 (ENSSTUG00000000729) #21	prox1a (ENSSTUG00000000736) #22	SMYD2 (ENSSTUG00000000746) #23	PTPN14 (ENSSTUG00000000773) #24	kcnk2b (ENSSTUG00000000783) #26	ENSSTUG00000000788	ABHD1 (ENSSTUG00000000794)	ENSSTUG00000000817	ENSSTUG00000000833	ctsbb (ENSSTUG00000000855)	fdft1 (ENSSTUG00000000941)	gata4 (ENSSTUG00000000954)	NCOA7 (ENSSTUG00000000961)	ENSSTUG00000000977	ENSSTUG00000000984	ENSSTUG00000000994	RSPO3 (ENSSTUG00000000995)
Salmoninae	ANCESTRAL SPECIES	2163															ENSGT00940000156058.g.b	ENSGT00940000154790.a.a.b.f #22
Salmoninae_a	ANCESTRAL SPECIES	23	ENSGT00940000158824.g	ENSGT00550000074694.b.m	ENSGT00390000005318.b.b.a.i	ENSGT00390000001660.m	ENSGT00940000153311.a.b.b.e	ENSGT00390000011892.g.a	ENSGT01100000263524.D.d.e	ENSGT00940000153804.A	ENSGT00940000155086.B.f	ENSGT00530000063558.B.k	ENSGT00390000011877	ENSGT00390000013931.m.a	ENSGT00530000063651.a.c	ENSGT00390000003188.i	ENSGT00940000156058.g.b	ENSGT00940000154790.a.a.b.f #22	ENSGT00940000165510.c	ENSGT00940000158133.e	ENSGT00730000111244.a.b.d	ENSGT01050000244948.c.b.a.a.a.i	ENSGT00940000153467.a.a.j	ENSGT01030000234595.A.b.a.b.a	ENSGT00940000162477.c.e.b	ENSGT00390000014904	ENSGT00950000182906.b.a.i.b.a	ENSGT00510000048701.a.b	ENSGT00940000156778.l.b	ENSGT00530000063408.A.j	ENSGT00940000160723.w	ENSGT00390000002881.fc.a	ENSGT00530000063583.b.b
Salmo	ANCESTRAL SPECIES	26	ENSGT00940000158824.g	ENSGT00550000074694.b.m	ENSGT00390000005318.b.b.a.i	ENSGT00390000001660.m	ENSGT00940000153311.a.b.b.e	ENSGT00390000011892.g.a	ENSGT01100000263524.D.d.e	ENSGT00940000153804.A	ENSGT00940000155086.B.f	ENSGT00530000063558.B.k	ENSGT00390000011877	ENSGT00390000013931.m.a	ENSGT00530000063651.a.c	ENSGT00390000003188.i	ENSGT00990000210479	ENSGT00940000154790.a.a.b.f #22	ENSGT00940000165510.c	ENSGT00940000158133.e	ENSGT00730000111244.a.b.d	ENSGT01050000244948.c.b.a.a.a.i	ENSGT00940000153467.a.a.j	ENSGT01030000234595.A.b.a.b.a	ENSGT00940000162477.c.e.b	ENSGT00390000014904	ENSGT00950000182906.b.a.i.b.a	ENSGT00510000048701.a.b	ENSGT00940000156778.l.b	ENSGT00530000063408.A.j	ENSGT00940000160723.w	ENSGT00390000002881.fc.a	ENSGT00530000063583.b.b
River trout	MODERN SPECIES	28	KLHL29 (ENSSTUG00000019640)	ATAD2B (ENSSTUG00000017837)	mfsd2b (ENSSTUG00000017708)	wdcp (ENSSTUG00000017700)	fkbp1b (ENSSTUG00000017668)	mmut (ENSSTUG00000017215)	opn8a (ENSSTUG00000017153)	drc1 (ENSSTUG00000017081)	otofa (ENSSTUG00000016416)	FNDC1 (ENSSTUG00000016260)	sod2 (ENSSTUG00000016111)	wtap (ENSSTUG00000016092)	acbd3 (ENSSTUG00000016082)	lin9 (ENSSTUG00000015004)	ENSSTUG00000014946	prox1a (ENSSTUG00000014925) #22	ENSSTUG00000014919	ENSSTUG00000014895	ENSSTUG00000014847	ENSSTUG00000014838	ENSSTUG00000014834	ENSSTUG00000014829	ENSSTUG00000013735	ENSSTUG00000013571	GRM1 (ENSSTUG00000025908)	rab32a (ENSSTUG00000025885)	ADGB (ENSSTUG00000025805)	stxbp5a (ENSSTUG00000023731)	SAMD5 (ENSSTUG00000023642)	SAMD5 (ENSSTUG00000023631)	ENSSTUG00000023627
Atlantic salmon	MODERN SPECIES	6	ENSSSAG00000072904	KLHL29 (ENSSSAG00000072906)	ATAD2B (ENSSSAG00000072937)	mfsd2b (ENSSSAG00000072986)	wdcp (ENSSSAG00000073030)	mut (ENSSSAG00000073058)	ENSSSAG00000074073	ENSSSAG00000074076	otofa (ENSSSAG00000074129)	FNDC1 (ENSSSAG00000074589)	sod2 (ENSSSAG00000074606)	wtap (ENSSSAG00000074636)	ENSSSAG00000121592	ENSSSAG00000074661	ENSSSAG00000112855	ENSSSAG00000039610 #22	ENSSSAG00000039664	ENSSSAG00000039737	ENSSSAG00000039839	ENSSSAG00000040053	ENSSSAG00000009650	ENSSSAG00000040169	GRM1 (ENSSSAG00000045907)	rab32a (ENSSSAG00000045918)	ADGB (ENSSSAG00000045931)	stxbp5a (ENSSSAG00000003440)	ENSSSAG00000104744	SAMD5 (ENSSSAG00000054946)	sash1a (ENSSSAG00000105883)	usta (ENSSSAG00000054961)	slc22a16 (ENSSSAG00000003207)
Oncorhynchus	ANCESTRAL SPECIES	25	ENSGT00940000158824.g	ENSGT00550000074694.b.m	ENSGT00390000005318.b.b.a.i	ENSGT00390000001660.m	ENSGT00940000153311.a.b.b.e.a.b	ENSGT00390000011892.g.a	ENSGT01100000263524.D.d.e	ENSGT00940000153804.A	ENSGT00940000155086.B.f	ENSGT00530000063558.B.k	ENSGT00390000011877	ENSGT00390000013931.m.a	ENSGT00530000063651.a.c	ENSGT00390000003188.i	ENSGT00940000156058.g.b	ENSGT00940000154790.a.a.b.f #22	ENSGT00940000156874.m #24	ENSGT00940000165510.c	ENSGT00940000158133.e	ENSGT00730000111244.a.b.d	ENSGT01050000244948.c.b.a.b	ENSGT00940000153467.a.a.j	ENSGT01030000234595.A.b.a.b.a	ENSGT00940000162477.c.e.b	ENSGT00390000014904	ENSGT00950000182906.b.a.i.b.a	ENSGT00510000048701.a.b	ENSGT00940000156778.l.b	ENSGT00530000063408.A.j	ENSGT00940000160723.w	ENSGT00390000002881.fc.a
Rainbow trout	MODERN SPECIES	29	mfsd2b (ENSOMYG00000020521)	wdcp (ENSOMYG00000020639)	fkbp1b (ENSOMYG00000020645)	mmut (ENSOMYG00000020771)	opn8a (ENSOMYG00000057946)	ENSOMYG00000021893	otofa (ENSOMYG00000022197)	FNDC1 (ENSOMYG00000023817)	ENSOMYG00000053153	sod2 (ENSOMYG00000024260)	wtap (ENSOMYG00000024720)	ENSOMYG00000024771	ENSOMYG00000059774	ENSOMYG00000024864	ENSOMYG00000024937	ENSOMYG00000024977 #22	ENSOMYG00000025006 #24	ENSOMYG00000025048	ENSOMYG00000025173	ENSOMYG00000001313	ENSOMYG00000001328	ENSOMYG00000001665	ENSOMYG00000061397	ENSOMYG00000001786	ENSOMYG00000062599	GRM1 (ENSOMYG00000002055)	rab32a (ENSOMYG00000002145)	ENSOMYG00000002151	ENSOMYG00000065928	ENSOMYG00000070827	ENSOMYG00000058899
Oncorhynchus_a	ANCESTRAL SPECIES	17	ENSGT00550000074694.b.m	ENSGT00390000005318.b.b.a.i	ENSGT00390000001660.m	ENSGT00940000153311.a.b.b.e.a.a	ENSGT00390000011892.g.a	ENSGT01100000263524.D.d.e	ENSGT00940000153804.A	ENSGT00940000155086.B.f	ENSGT00530000063558.B.k	ENSGT00390000011877	ENSGT00390000013931.m.a	ENSGT00530000063651.a.c	ENSGT01000000220371	ENSGT00390000003188.i	ENSGT00940000156058.g.b	ENSGT00940000154790.a.a.b.f #22	ENSGT00940000156874.m #24	ENSGT00940000165510.c	ENSGT00940000158133.e	ENSGT00730000111244.a.b.d	ENSGT01050000244948.c.b.a.b	ENSGT00940000153467.a.a.j	ENSGT01030000234595.A.b.a.b.a	ENSGT00940000162477.c.e.b	ENSGT00390000014904	ENSGT00950000182906.b.a.i.b.a	ENSGT00510000048701.a.b	ENSGT00510000048701.a.a.b.b	ENSGT00940000156778.l.b	ENSGT00530000063408.A.j	ENSGT00940000160723.w
Chinook salmon	DUPLICATION
Chinook salmon	DUPLICATION
Chinook salmon	MODERN SPECIES	29	KLHL29 (ENSOTSG00005040148)	mfsd2b (ENSOTSG00005040149)	wdcp (ENSOTSG00005040275)	fkbp1b (ENSOTSG00005040277)	mmut (ENSOTSG00005040284)	opn8a (ENSOTSG00005040316)	drc1 (ENSOTSG00005040317)	otofa (ENSOTSG00005040324)	FNDC1 (ENSOTSG00005040328)	sod2 (ENSOTSG00005040331)	wtap (ENSOTSG00005040335)	acbd3 (ENSOTSG00005027690)	ENSOTSG00005027696	lin9 (ENSOTSG00005027731)	ENSOTSG00005027781	prox1a (ENSOTSG00005027782) #22	ENSOTSG00005027783 #24	ENSOTSG00005027784	esr1 (ENSOTSG00005027786)	akap12b (ENSOTSG00005027790)	STX11 (ENSOTSG00005027791)	ENSOTSG00005027800	ENSOTSG00005027896	GRM1 (ENSOTSG00005027897)	rab32a (ENSOTSG00005027898)	ADGB (ENSOTSG00005027899)	stxbp5a (ENSOTSG00005027904)	SAMD5 (ENSOTSG00005028609)	sash1a (ENSOTSG00005028610)	usta (ENSOTSG00005028612)	slc22a16 (ENSOTSG00005028613)
Chinook salmon	MODERN SPECIES	29	fgf18b (ENSOTSG00005028196)	ATAD2B (ENSOTSG00005028199)	mfsd2b (ENSOTSG00005028207)	wdcp (ENSOTSG00005028808)	fkbp1b (ENSOTSG00005028809)	mmut (ENSOTSG00005028812)	opn8a (ENSOTSG00005028847)	drc1 (ENSOTSG00005028848)	otofa (ENSOTSG00005028859)	FNDC1 (ENSOTSG00005028882)	sod2 (ENSOTSG00005028888)	wtap (ENSOTSG00005028892)	acbd3 (ENSOTSG00005028896)	ENSOTSG00005028897	lin9 (ENSOTSG00005028898)	prox1a (ENSOTSG00005028902) #22	ENSOTSG00005028904 #24	ENSOTSG00005028905	esr1 (ENSOTSG00005028906)	akap12b (ENSOTSG00005028907)	STX11 (ENSOTSG00005028908)	ENSOTSG00005028909	ENSOTSG00005028958	GRM1 (ENSOTSG00005028959)	rab32a (ENSOTSG00005028960)	ADGB (ENSOTSG00005028962)	stxbp5a (ENSOTSG00005028976)	SAMD5 (ENSOTSG00005029116)	SAMD5 (ENSOTSG00005029117)	usta (ENSOTSG00005029118)	slc22a16 (ENSOTSG00005029119)
Chinook salmon	MODERN SPECIES	43	ATAD2B (ENSOTSG00005039758)	mfsd2b (ENSOTSG00005039795)	wdcp (ENSOTSG00005040212)	fkbp1b (ENSOTSG00005040213)	mmut (ENSOTSG00005040215)	opn8a (ENSOTSG00005040287)	drc1 (ENSOTSG00005040291)	otofa (ENSOTSG00005040323)	FNDC1 (ENSOTSG00005040333)	sod2 (ENSOTSG00005040341)	wtap (ENSOTSG00005040342)	acbd3 (ENSOTSG00005040346)	ENSOTSG00005040347	lin9 (ENSOTSG00005040348)	ENSOTSG00005040354	prox1a (ENSOTSG00005040359) #22	ENSOTSG00005040361	esr1 (ENSOTSG00005040362)	akap12b (ENSOTSG00005040364)	STX11 (ENSOTSG00005040365)	ENSOTSG00005040370	ENSOTSG00005040395	GRM1 (ENSOTSG00005040397)	rab32a (ENSOTSG00005040400)	ADGB (ENSOTSG00005040401)	stxbp5a (ENSOTSG00005040409)	SAMD5 (ENSOTSG00005040523)	sash1a (ENSOTSG00005040526)	usta (ENSOTSG00005040528)	ENSOTSG00005040529	slc22a16 (ENSOTSG00005040530)
Coho salmon	MODERN SPECIES	3	mfsd2b (ENSOKIG00005017661)	wdcp (ENSOKIG00005017807)	fkbp1b (ENSOKIG00005017818)	mmut (ENSOKIG00005017867)	opn8a (ENSOKIG00005018141)	drc1 (ENSOKIG00005018160)	otofa (ENSOKIG00005018306)	ENSOKIG00005018674	ENSOKIG00005019053	WTAP (ENSOKIG00005019063)	sod2 (ENSOKIG00005019088)	ACBD3 (ENSOKIG00005019111)	ENSOKIG00005019123	LIN9 (ENSOKIG00005019147)	ENSOKIG00005019220	PROX1 (ENSOKIG00005019222) #22	ENSOKIG00005019242 #24	ENSOKIG00005019255	ENSOKIG00005019289	ENSOKIG00005019359	ENSOKIG00005019438	GRM1 (ENSOKIG00005021546)	rab32a (ENSOKIG00005021641)	ADGB (ENSOKIG00005021673)	stxbp5a (ENSOKIG00005021784)	SAMD5 (ENSOKIG00005023200)	SAMD5 (ENSOKIG00005023206)	sash1a (ENSOKIG00005023260)	usta (ENSOKIG00005023468)	slc22a16 (ENSOKIG00005023489)	ENSOKIG00005023502
Huchen	MODERN SPECIES	266	wdcp (ENSHHUG00000003774)	fkbp1b (ENSHHUG00000003777)	mmut (ENSHHUG00000003789)	opn8a (ENSHHUG00000003839)	drc1 (ENSHHUG00000003880)	otofa (ENSHHUG00000003900)	FNDC1 (ENSHHUG00000004155)	sod2 (ENSHHUG00000004257)	wtap (ENSHHUG00000004388)	ENSHHUG00000004437	acbd3 (ENSHHUG00000004442)	lin9 (ENSHHUG00000004446)	ENSHHUG00000004557	ENSHHUG00000004551	ENSHHUG00000004559	prox1a (ENSHHUG00000004587) #22	esr1 (ENSHHUG00000004593)	ENSHHUG00000004603	zbtb2b (ENSHHUG00000004663)	akap12b (ENSHHUG00000004667)	STX11 (ENSHHUG00000004669)	STX11 (ENSHHUG00000004675)	ENSHHUG00000004709	ENSHHUG00000004762	GRM1 (ENSHHUG00000004881)	rab32a (ENSHHUG00000004909)	ADGB (ENSHHUG00000004922)	ENSHHUG00000004934
Northern pike	MODERN SPECIES	17	parp1 (ENSELUG00000017336)	ENSELUG00000017263	lin9 (ENSELUG00000017400)	mixl1 (ENSELUG00000017417)	acbd3 (ENSELUG00000017434)	NHSL1 (ENSELUG00000017582)	KIF25 (ENSELUG00000024707)	ENSELUG00000031001	cmtr1 (ENSELUG00000004404)	ENSELUG00000004593	ENSELUG00000000455	fdft1 (ENSELUG00000012411)	ENSELUG00000031617	rps6kc1 (ENSELUG00000001745) #21	ENSELUG00000027479	prox1a (ENSELUG00000001746) #22	SMYD2 (ENSELUG00000004020) #23	ENSELUG00000027131	ENSELUG00000025112	PTPN14 (ENSELUG00000003696) #24
Acanthomorphata	ANCESTRAL SPECIES	59	ENSGT00940000156452.a.a	ENSGT00940000153463.a.c.b	ENSGT00510000047616.a.a	ENSGT00510000047616.a.b	ENSGT00940000155141.w.a	ENSGT00940000158349	ENSGT00390000016034	ENSGT00940000166128	ENSGT00950000182902.a.d	ENSGT00940000165510	ENSGT00940000156560.h #26	ENSGT00940000164041.b.a	ENSGT00940000156557.h	ENSGT00530000063085.A.a	ENSGT00940000155656 #21	ENSGT00940000154790.a.a.b #22	ENSGT00940000166832	ENSGT00940000156874 #24	ENSGT00390000016811.h	ENSGT00390000002143.b.a	ENSGT00940000167206	ENSGT01030000234555.a.b.f.a	ENSGT00940000156058	ENSGT00390000003188	ENSGT00940000162190	ENSGT00530000063651.a	ENSGT00950000182963.a.a	ENSGT00940000160412.a	ENSGT00940000157172	ENSGT00390000017888	ENSGT00390000004915.b
Euacanthomorphacea	ANCESTRAL SPECIES	13	ENSGT00940000156452.a.a	ENSGT00940000153463.a.c.b	ENSGT00510000047616.a.a	ENSGT00510000047616.a.b	ENSGT00940000155141.w.a	ENSGT00940000158349	ENSGT00390000016034	ENSGT00940000166128	ENSGT00950000182902.a.d	ENSGT00940000165510	ENSGT00940000156560.h #26	ENSGT00940000164041.b.a	ENSGT00940000156557.h	ENSGT00530000063085.A.a	ENSGT00940000155656 #21	ENSGT00940000154790.a.a.b #22	ENSGT00940000166832	ENSGT00940000156874 #24	ENSGT00390000016811.h	ENSGT00390000002143.b.a	ENSGT00940000167206	ENSGT01030000234555.a.b.f.a	ENSGT00940000156058	ENSGT00390000003188	ENSGT00940000162190	ENSGT00530000063651.a	ENSGT00950000182963.a.a	ENSGT00940000160412.a	ENSGT00940000157172	ENSGT00390000017888	ENSGT00390000004915.b
Percomorphaceae	ANCESTRAL SPECIES	14	ENSGT00940000156452.a.a	ENSGT00940000153463.a.c.b	ENSGT00510000047616.a.a	ENSGT00510000047616.a.b	ENSGT00940000155141.w.a	ENSGT00940000158349	ENSGT00390000016034	ENSGT00940000166128	ENSGT00950000182902.a.d	ENSGT00940000165510	ENSGT00940000156560.h #26	ENSGT00940000164041.b.a	ENSGT00940000156557.h	ENSGT00530000063085.A.a	ENSGT00940000155656 #21	ENSGT00940000154790.a.a.b #22	ENSGT00940000166832	ENSGT00940000156874 #24	ENSGT00390000016811.h	ENSGT00390000002143.b.a	ENSGT00940000167206	ENSGT01030000234555.a.b.f.a	ENSGT00940000156058	ENSGT00390000003188	ENSGT00940000162190	ENSGT00530000063651.a	ENSGT00950000182963.a.a	ENSGT00940000160412.a	ENSGT00940000157172	ENSGT00940000178326	ENSGT00940000175191
Percomorphaceae_B	ANCESTRAL SPECIES	18	ENSGT00940000153463.a.c.b	ENSGT00510000047616.a.a	ENSGT00510000047616.a.b	ENSGT00940000155141.w.a	ENSGT00940000175851	ENSGT00940000158349	ENSGT00390000016034	ENSGT00940000166128	ENSGT00950000182902.a.d	ENSGT00940000165510	ENSGT00940000156560.h #26	ENSGT00940000164041.b.a	ENSGT00940000156557.h	ENSGT00530000063085.A.a	ENSGT00940000155656 #21	ENSGT00940000154790.a.a.b #22	ENSGT00940000166832	ENSGT00940000156874 #24	ENSGT00390000016811.h	ENSGT00390000002143.b.a	ENSGT00940000167206	ENSGT01030000234555.a.b.f.a	ENSGT00940000156058	ENSGT00390000003188	ENSGT00940000162190	ENSGT00530000063651.a	ENSGT00950000182963.a.a	ENSGT00940000160412.a	ENSGT00940000157172	ENSGT00940000178326	ENSGT00940000175191
Ovalentaria	ANCESTRAL SPECIES	19	ENSGT00940000153463.a.c.b	ENSGT00510000047616.a.a	ENSGT00510000047616.a.b	ENSGT00940000155141.w.a	ENSGT00940000175851	ENSGT00940000158349	ENSGT00390000016034	ENSGT00940000166128	ENSGT00950000182902.a.d	ENSGT00940000165510	ENSGT00940000156560.h #26	ENSGT00940000164041.b.a	ENSGT00940000156557.h	ENSGT00530000063085.A.a	ENSGT00940000155656 #21	ENSGT00940000154790.a.a.b #22	ENSGT00940000166832	ENSGT00940000156874 #24	ENSGT00390000016811.h	ENSGT00390000002143.b.a	ENSGT00940000167206	ENSGT01030000234555.a.b.f.a	ENSGT00940000156058	ENSGT00390000003188	ENSGT00940000162190	ENSGT00530000063651.a	ENSGT00950000182963.a.a	ENSGT00940000160412.a	ENSGT00940000157172	ENSGT00940000178326	ENSGT00940000175191
Atherinomorphae	ANCESTRAL SPECIES	18	ENSGT00940000156452.a.a	ENSGT00940000153463.a.c.b	ENSGT00510000047616.a.b	ENSGT00940000155141.w.a	ENSGT00940000175851	ENSGT00940000158349	ENSGT00390000016034	ENSGT00940000166128	ENSGT00950000182902.a.d	ENSGT00940000165510	ENSGT00940000156560.h #26	ENSGT00940000164041.b.a	ENSGT00940000156557.h	ENSGT00530000063085.A.a	ENSGT00940000155656 #21	ENSGT00940000154790.a.a.b #22	ENSGT00940000166832	ENSGT00940000156874 #24	ENSGT00390000016811.h	ENSGT00390000002143.b.a	ENSGT00940000167206	ENSGT01030000234555.a.b.f.a	ENSGT00940000156058	ENSGT00390000003188	ENSGT00940000162190	ENSGT00530000063651.a	ENSGT00950000182963.a.a	ENSGT00940000160412.a	ENSGT00940000157172	ENSGT00940000175191	ENSGT00940000178326
Cyprinodontiformes	ANCESTRAL SPECIES	14	ENSGT00940000156452.a.a	ENSGT00940000153463.a.c.b	ENSGT00510000047616.a.b	ENSGT00940000155141.w.a	ENSGT00940000175851	ENSGT00940000158349	ENSGT00390000016034	ENSGT00940000166128	ENSGT00950000182902.a.d	ENSGT00940000165510	ENSGT00940000156560.h #26	ENSGT00940000164041.b.a	ENSGT00940000156557.h	ENSGT00530000063085.A.a	ENSGT00940000155656 #21	ENSGT00940000154790.a.a.b #22	ENSGT00940000166832	ENSGT00940000156874 #24	ENSGT00390000016811.h	ENSGT00390000002143.b.a	ENSGT00940000167206	ENSGT01030000234555.a.b.f.a	ENSGT00940000156058	ENSGT00390000003188	ENSGT00940000162190	ENSGT00530000063651.a	ENSGT00950000182963.a.a	ENSGT00940000160412.a	ENSGT00940000157172	ENSGT00390000017888	ENSGT00390000004915.b
Aplocheiloidei	ANCESTRAL SPECIES	36	ENSGT00940000153463.a.c.b	ENSGT00510000047616.a.b	ENSGT00940000155141.w.a	ENSGT00940000175851	ENSGT00940000158349	ENSGT00390000016034	ENSGT00940000166128	ENSGT00950000182902.a.d	ENSGT00940000165510	ENSGT00940000156560.h #26	ENSGT00940000164041.b.a	ENSGT00940000156557.h	ENSGT00940000178926	ENSGT00530000063085.A.a	ENSGT00940000155656 #21	ENSGT00940000154790.a.a.b #22	ENSGT00940000166832	ENSGT00940000156874 #24	ENSGT00940000169582	ENSGT00390000002143.b.a	ENSGT00940000167206	ENSGT01030000234555.a.b.f.a	ENSGT00940000156058	ENSGT00390000003188	ENSGT00940000162190	ENSGT00530000063651.a	ENSGT00950000182963.a.a	ENSGT00940000160412.a	ENSGT00940000157172	ENSGT00390000017888	ENSGT00390000004915.b
Mangrove rivulus	MODERN SPECIES	70	daam1b (ENSKMAG00000012440)	ppp1r13bb (ENSKMAG00000012386)	ENSKMAG00000012361	ENSKMAG00000012346	ENSKMAG00000012337	gata4 (ENSKMAG00000012323)	fdft1 (ENSKMAG00000012281)	ctsbb (ENSKMAG00000012243)	ENSKMAG00000012175	ENSKMAG00000012115	kcnk2b (ENSKMAG00000012086) #26	ENSKMAG00000012063	SNX9 (ENSKMAG00000012008)	ENSKMAG00000011979	rps6kc1 (ENSKMAG00000011947) #21	prox1a (ENSKMAG00000011924) #22	ENSKMAG00000011872	PTPN14 (ENSKMAG00000011829) #24	ENSKMAG00000011812	EFR3B (ENSKMAG00000011739)	ENSKMAG00000011690	parp1 (ENSKMAG00000011627)	lin9 (ENSKMAG00000011595)	mixl1 (ENSKMAG00000011573)	acbd3 (ENSKMAG00000011560)	NHSL1 (ENSKMAG00000011490)	hebp2 (ENSKMAG00000011416)	cmtr1 (ENSKMAG00000011344)	ENSKMAG00000011321	fbxo25 (ENSKMAG00000011281)	FAM110C (ENSKMAG00000011252)
Turquoise killifish	MODERN SPECIES	1613	kcnh5a (ENSNFUG00015003719)	CABZ01039235.1 (ENSNFUG00015003724)	DAAM1B (ENSNFUG00015003756)	ENSNFUG00015003887	ENSNFUG00015003889	NCOA7 (ENSNFUG00015003895)	gata4 (ENSNFUG00015003901)	FDFT1 (ENSNFUG00015003910)	ctsbb (ENSNFUG00015003917)	ABHD1 (ENSNFUG00015003927)	KCNK2B (ENSNFUG00015003932) #26	SNX9 (ENSNFUG00015004002)	ENSNFUG00015004132	ENSNFUG00015004139	RPS6KC1 (ENSNFUG00015004163) #21	PROX1 (ENSNFUG00015004242) #22	ENSNFUG00015004257	smyd2b (ENSNFUG00015004273)	PTPN14 (ENSNFUG00015004291) #24	ENSNFUG00015004295	EFR3BB (ENSNFUG00015004341)	ENSNFUG00015004503	parp1 (ENSNFUG00015004671)	ENSNFUG00015004930	lin9 (ENSNFUG00015004993)	mixl1 (ENSNFUG00015005040)	acbd3 (ENSNFUG00015005062)	NHSL1 (ENSNFUG00015005101)	HEBP2 (ENSNFUG00015005116)	ENSNFUG00015009565	ENSNFUG00015009575
Cyprinodontoidei	ANCESTRAL SPECIES	12	ENSGT00940000156452.a.a	ENSGT00940000153463.a.c.b	ENSGT00510000047616.a.b	ENSGT00940000155141.w.a	ENSGT00940000175851	ENSGT00940000158349	ENSGT00390000016034	ENSGT00940000166128	ENSGT00950000182902.a.d	ENSGT00940000165510	ENSGT00940000156560.h #26	ENSGT00940000164041.b.a	ENSGT00940000156557.h	ENSGT00530000063085.A.a	ENSGT00940000155656 #21	ENSGT00940000154790.a.a.b #22	ENSGT00940000166832	ENSGT00940000156874 #24	ENSGT00390000016811.h	ENSGT00390000002143.b.a	ENSGT00940000167206	ENSGT01030000234555.a.b.f.a	ENSGT00940000156058	ENSGT00390000003188	ENSGT00940000162190	ENSGT00530000063651.a	ENSGT00950000182963.a.a	ENSGT00940000160412.a	ENSGT00940000157172	ENSGT00390000017888	ENSGT00390000004915.b
Poeciliinae	ANCESTRAL SPECIES	15	ENSGT00940000156452.a.a	ENSGT00940000153463.a.c.b	ENSGT00510000047616.a.b	ENSGT00940000155141.w.a	ENSGT00940000155141.x	ENSGT00940000158349	ENSGT00390000016034	ENSGT00940000166128	ENSGT00950000182902.a.d	ENSGT00940000165510	ENSGT00940000156560.h #26	ENSGT00940000164041.b.a	ENSGT00940000156557.h	ENSGT00530000063085.A.a	ENSGT00940000155656 #21	ENSGT00940000154790.a.a.b #22	ENSGT00940000166832	ENSGT00940000156874 #24	ENSGT00390000016811.h	ENSGT00390000002143.b.a	ENSGT00940000167206	ENSGT01030000234555.a.b.f.a	ENSGT00940000156058	ENSGT00390000003188	ENSGT00940000162190	ENSGT00530000063651.a	ENSGT00950000182963.a.a	ENSGT00940000160412.a	ENSGT00940000157172	ENSGT00390000017888	ENSGT00390000004915.b
Poecilia	ANCESTRAL SPECIES	9	ENSGT00390000002032	ENSGT00940000156452.a.a	ENSGT00940000153463.a.c.b	ENSGT00510000047616.a.b	ENSGT00940000155141.w.a	ENSGT00940000158349	ENSGT00390000016034	ENSGT00940000166128	ENSGT00950000182902.a.d	ENSGT00940000165510	ENSGT00940000156560.h #26	ENSGT00940000164041.b.a	ENSGT00940000156557.h	ENSGT00530000063085.A.a	ENSGT00940000155656 #21	ENSGT00940000154790.a.a.b #22	ENSGT00940000166832	ENSGT00940000156874 #24	ENSGT00390000016811.h	ENSGT00390000002143.b.a	ENSGT00940000167206	ENSGT01030000234555.a.b.f.a	ENSGT00940000156058	ENSGT00390000003188	ENSGT00940000162190	ENSGT00530000063651.a	ENSGT00950000182963.a.a	ENSGT00940000160412.a	ENSGT00940000157172	ENSGT00390000017888	ENSGT00390000004915.b
NAME_6	ANCESTRAL SPECIES	2	ENSGT00390000002032	ENSGT00940000156452.a.a	ENSGT00940000153463.a.c.b	ENSGT00510000047616.a.b	ENSGT00940000155141.w.a	ENSGT00940000158349	ENSGT00390000016034	ENSGT00940000166128	ENSGT00950000182902.a.d	ENSGT00940000165510	ENSGT00940000156560.h #26	ENSGT00940000164041.b.a	ENSGT00940000156557.h	ENSGT00530000063085.A.a	ENSGT00940000155656 #21	ENSGT00940000154790.a.a.b #22	ENSGT00940000166832	ENSGT00940000156874 #24	ENSGT00390000016811.h	ENSGT00390000002143.b.a	ENSGT00940000167206	ENSGT01030000234555.a.b.f.a	ENSGT00940000156058	ENSGT00390000003188	ENSGT00940000162190	ENSGT00530000063651.a	ENSGT00950000182963.a.a	ENSGT00940000160412.a	ENSGT00940000157172	ENSGT00390000017888	ENSGT00390000004915.b
Amazon molly	MODERN SPECIES	304	L3HYPDH (ENSPFOG00000006416)	daam1b (ENSPFOG00000005990)	ppp1r13bb (ENSPFOG00000005703)	ENSPFOG00000005680	NCOA7 (ENSPFOG00000005513)	gata4 (ENSPFOG00000022572)	fdft1 (ENSPFOG00000005358)	ctsbb (ENSPFOG00000005337)	ENSPFOG00000005269	ENSPFOG00000005024	kcnk2b (ENSPFOG00000004806) #26	ENSPFOG00000004737	SNX9 (ENSPFOG00000004400)	ENSPFOG00000004129	rps6kc1 (ENSPFOG00000003901) #21	prox1a (ENSPFOG00000003774) #22	smyd2b (ENSPFOG00000003553)	PTPN14 (ENSPFOG00000003299) #24	POMC (ENSPFOG00000003288)	EFR3B (ENSPFOG00000003161)	ENSPFOG00000002814	ENSPFOG00000020508	parp1 (ENSPFOG00000002342)	lin9 (ENSPFOG00000002168)	mixl1 (ENSPFOG00000002132)	acbd3 (ENSPFOG00000002048)	NHSL1 (ENSPFOG00000001919)	hebp2 (ENSPFOG00000001832)	cmtr1 (ENSPFOG00000001587)	ENSPFOG00000001444	fbxo25 (ENSPFOG00000001226)
Sailfin molly	MODERN SPECIES	1624																prox1a (ENSPLAG00000013216) #22
Guppy	MODERN SPECIES	452	daam1b (ENSPREG00000020021)	ppp1r13bb (ENSPREG00000020137)	ENSPREG00000020200	NCOA7 (ENSPREG00000020213)	gata4 (ENSPREG00000020235)	fdft1 (ENSPREG00000020248)	ctsbb (ENSPREG00000020258)	ABHD1 (ENSPREG00000020269)	ENSPREG00000020292	ENSPREG00000020313	kcnk2b (ENSPREG00000020326) #26	ENSPREG00000000624	SNX9 (ENSPREG00000000638)	ENSPREG00000000670	rps6kc1 (ENSPREG00000000738) #21	prox1a (ENSPREG00000000769) #22	ENSPREG00000000790	PTPN14 (ENSPREG00000000870) #24	POMC (ENSPREG00000000968)	EFR3B (ENSPREG00000001028)	ENSPREG00000001081	parp1 (ENSPREG00000001114)	ENSPREG00000001210	lin9 (ENSPREG00000001237)	mixl1 (ENSPREG00000001369)	acbd3 (ENSPREG00000001402)	NHSL1 (ENSPREG00000001434)	hebp2 (ENSPREG00000001478)	cmtr1 (ENSPREG00000001500)	ENSPREG00000001578	fbxo25 (ENSPREG00000001610)
Platyfish	MODERN SPECIES	6	ppp1r13bb (ENSXMAG00000003812)	ENSXMAG00000003810	ENSXMAG00000030054	ENSXMAG00000022620	gata4 (ENSXMAG00000009238)	ENSXMAG00000024126	fdft1 (ENSXMAG00000003786)	ctsbb (ENSXMAG00000003780)	ABHD1 (ENSXMAG00000003774)	ENSXMAG00000024204	KCNK2 (ENSXMAG00000021485) #26	ENSXMAG00000003752	SNX9 (ENSXMAG00000003732)	ENSXMAG00000003722	rps6kc1 (ENSXMAG00000003715) #21	prox1a (ENSXMAG00000003709) #22	smyd2b (ENSXMAG00000003700)	PTPN14 (ENSXMAG00000003682) #24	POMC (ENSXMAG00000003681)	EFR3B (ENSXMAG00000003648)	ENSXMAG00000003633	ENSXMAG00000025693	ENSXMAG00000019547	parp1 (ENSXMAG00000003632)	lin9 (ENSXMAG00000007451)	mixl1 (ENSXMAG00000007472)	acbd3 (ENSXMAG00000007475)	NHSL1 (ENSXMAG00000007482)	hebp2 (ENSXMAG00000007484)	cmtr1 (ENSXMAG00000007486)	ENSXMAG00000024140
NAME_4	ANCESTRAL SPECIES	8	ENSGT00940000156452.a.a	ENSGT00940000153463.a.c.b	ENSGT00510000047616.a.b	ENSGT00940000155141.w.a	ENSGT00940000175851	ENSGT00940000158349	ENSGT00390000016034	ENSGT00940000166128	ENSGT00950000182902.a.d	ENSGT00940000165510	ENSGT00940000156560.h #26	ENSGT00940000164041.b.a	ENSGT00940000156557.h	ENSGT00530000063085.A.a	ENSGT00940000155656 #21	ENSGT00940000154790.a.a.b #22	ENSGT00940000166832	ENSGT00940000156874 #24	ENSGT00390000016811.h	ENSGT00390000002143.b.a	ENSGT00940000167206	ENSGT00940000156058	ENSGT01030000234555.a.b.f.a	ENSGT00390000003188	ENSGT00940000162190	ENSGT00530000063651.a	ENSGT00950000182963.a.a	ENSGT00940000160412.a	ENSGT00940000157172	ENSGT00390000017888	ENSGT00390000004915.b
Sheepshead minnow	MODERN SPECIES	116	daam1b (ENSCVAG00000022472)	ppp1r13bb (ENSCVAG00000022434)	ENSCVAG00000000732	ENSCVAG00000022346	ENSCVAG00000022331	gata4 (ENSCVAG00000022324)	fdft1 (ENSCVAG00000022314)	ctsbb (ENSCVAG00000022308)	ABHD1 (ENSCVAG00000022287)	ENSCVAG00000022279	kcnk2b (ENSCVAG00000022243) #26	ENSCVAG00000022220	SNX9 (ENSCVAG00000022206)	ENSCVAG00000022097	rps6kc1 (ENSCVAG00000022089) #21	prox1a (ENSCVAG00000022069) #22	smyd2b (ENSCVAG00000022057)	PTPN14 (ENSCVAG00000022019) #24	ENSCVAG00000021950	EFR3B (ENSCVAG00000021893)	ENSCVAG00000021766	parp1 (ENSCVAG00000021372)	ENSCVAG00000021272	lin9 (ENSCVAG00000021253)	mixl1 (ENSCVAG00000021246)	acbd3 (ENSCVAG00000021202)	NHSL1 (ENSCVAG00000021161)	hebp2 (ENSCVAG00000021137)	cmtr1 (ENSCVAG00000021132)	ENSCVAG00000021046	fbxo25 (ENSCVAG00000021036)
Mummichog	MODERN SPECIES	2240	daam1b (ENSFHEG00000001262)	ppp1r13bb (ENSFHEG00000001247)	ENSFHEG00000001227	NCOA7 (ENSFHEG00000001220)	gata4 (ENSFHEG00000001214)	fdft1 (ENSFHEG00000001212)	ctsbb (ENSFHEG00000001209)	ENSFHEG00000001206	ENSFHEG00000001201	ENSFHEG00000001199	kcnk2b (ENSFHEG00000001196) #26	ENSFHEG00000000050	SNX9 (ENSFHEG00000001170)	ENSFHEG00000001154	rps6kc1 (ENSFHEG00000001150) #21	prox1a (ENSFHEG00000001147) #22	ENSFHEG00000001143	PTPN14 (ENSFHEG00000001138) #24	ENSFHEG00000001134	EFR3B (ENSFHEG00000001130)	ENSFHEG00000001125	parp1 (ENSFHEG00000001117)	ENSFHEG00000001111	lin9 (ENSFHEG00000001109)	lin9 (ENSFHEG00000001107)	mixl1 (ENSFHEG00000001103)	acbd3 (ENSFHEG00000001102)	NHSL1 (ENSFHEG00000001098)	hebp2 (ENSFHEG00000001092)	cmtr1 (ENSFHEG00000001086)	ENSFHEG00000001078
Oryzias	ANCESTRAL SPECIES	19	ENSGT00940000164609.a	ENSGT00940000166133	ENSGT00390000012816	ENSGT00390000005665	ENSGT00950000183050.b.b.b.a.b.a.d	ENSGT00940000166514	ENSGT00390000005033	ENSGT00390000007479	ENSGT00940000154514	ENSGT00940000155369.A.d.b	ENSGT00940000154856.A.b	ENSGT00940000161931	ENSGT00390000007341.a	ENSGT00530000063085.A.a	ENSGT00940000155656 #21	ENSGT00940000154790.a.a.b #22	ENSGT00940000166832	ENSGT00940000156874 #24	ENSGT00390000016811.h	ENSGT00530000063695.b	ENSGT00530000063929.a.b	ENSGT00940000159634	ENSGT00940000159266	ENSGT00530000063712.a.b	ENSGT00390000009045	ENSGT00940000155913.d	ENSGT00390000007183	ENSGT00390000004028	ENSGT00390000003560	ENSGT00390000011642.e	ENSGT00940000154481.a.b
Oryzias_b	ANCESTRAL SPECIES	17	ENSGT00940000164609.a	ENSGT00940000166133	ENSGT00390000012816	ENSGT00390000005665	ENSGT00950000183050.b.b.b.a.b.a.d	ENSGT00940000166514	ENSGT00390000005033	ENSGT00390000007479	ENSGT00940000154514	ENSGT00940000155369.A.d.b	ENSGT00940000154856.A.b	ENSGT00940000154720	ENSGT00390000007341.a	ENSGT00530000063085.A.a	ENSGT00940000155656 #21	ENSGT00940000154790.a.a.b #22	ENSGT00940000166832	ENSGT00940000156874 #24	ENSGT00390000016811.h	ENSGT00530000063695.b	ENSGT00530000063929.a.b	ENSGT00940000159634	ENSGT00940000159266	ENSGT00530000063712.a.b	ENSGT01030000234809	ENSGT00390000009045	ENSGT00940000155913.d	ENSGT00390000007183	ENSGT00390000004028	ENSGT00390000003560	ENSGT00390000011642.e
Indian medaka	MODERN SPECIES	22	ENSOMEG00000011323	ENSOMEG00000011289	ENSOMEG00000011277	naa30 (ENSOMEG00000011245)	ENSOMEG00000011222	arf6a (ENSOMEG00000011194)	prpf39 (ENSOMEG00000011139)	faua (ENSOMEG00000011071)	FKBP3 (ENSOMEG00000011034)	MDGA2 (ENSOMEG00000010974)	ENSOMEG00000010871	rps29 (ENSOMEG00000010831)	mgat2 (ENSOMEG00000010820)	ENSOMEG00000010808	rps6kc1 (ENSOMEG00000010758) #21	prox1a (ENSOMEG00000010697) #22	smyd2b (ENSOMEG00000010678)	ENSOMEG00000010615 #24	ENSOMEG00000010608 #24	ENSOMEG00000010599 #24	ENSOMEG00000010586	cep57l1 (ENSOMEG00000010571)	ENSOMEG00000010548	ppil6 (ENSOMEG00000000253)	ENSOMEG00000010515	si:ch211-51e12.7 (ENSOMEG00000010489)	mrps10 (ENSOMEG00000010468)	tulp4a (ENSOMEG00000010431)	tmem181 (ENSOMEG00000010307)	gtf2h5 (ENSOMEG00000010204)	serac1 (ENSOMEG00000010191)
Javanese ricefish	MODERN SPECIES	16	mfsd4b (ENSOJAG00000023487)	ENSOJAG00000023477	naa30 (ENSOJAG00000023473)	ENSOJAG00000023471	ENSOJAG00000023467	prpf39 (ENSOJAG00000023428)	faua (ENSOJAG00000023420)	FKBP3 (ENSOJAG00000023416)	OjLCE (ENSOJAG00000023413)	MDGA2 (ENSOJAG00000023345)	rps29 (ENSOJAG00000023319)	mgat2 (ENSOJAG00000023318)	ENSOJAG00000023312	rps6kc1 (ENSOJAG00000023288) #21	ENSOJAG00000023278	prox1a (ENSOJAG00000023266) #22	smyd2b (ENSOJAG00000023140)	PTPN14 (ENSOJAG00000023097) #24	ENSOJAG00000023088	cep57l1 (ENSOJAG00000023083)	ENSOJAG00000023078	ppil6 (ENSOJAG00000023065)	ENSOJAG00000023047	msgn1 (ENSOJAG00000023041)	mrps10 (ENSOJAG00000023038)	tulp4a (ENSOJAG00000023032)	tmem181 (ENSOJAG00000023025)	gtf2h5 (ENSOJAG00000023015)	serac1 (ENSOJAG00000022976)	myct1a (ENSOJAG00000022970)	esr1 (ENSOJAG00000021522)
Oryzias_a	ANCESTRAL SPECIES	13	ENSGT00530000063320.B	ENSGT00940000156226	ENSGT00940000164609.a	ENSGT00940000166133	ENSGT00390000012816	ENSGT00390000005665	ENSGT00950000183050.b.b.b.a.b.a.d	ENSGT00390000005033	ENSGT00390000007479	ENSGT00940000155369.A.d.b	ENSGT00940000154856.A.b	ENSGT00940000161931	ENSGT00390000007341.a	ENSGT00530000063085.A.a	ENSGT00940000155656 #21	ENSGT00940000154790.a.a.b #22	ENSGT00940000166832	ENSGT00940000156874 #24	ENSGT00390000016811.h	ENSGT00530000063695.b	ENSGT00530000063929.a.b	ENSGT00940000159634	ENSGT00940000159266	ENSGT00530000063712.a.b	ENSGT00390000009045	ENSGT00940000155913.d	ENSGT00390000007183	ENSGT00390000004028	ENSGT00390000003560	ENSGT00390000011642.e	ENSGT00940000154481.a.b
Japanese Medaka HdrR	MODERN SPECIES	16	ENSORLG00000010929	ENSORLG00000029061	ENSORLG00000027962	ENSORLG00000029949	ENSORLG00000024112	ENSORLG00000023240	ENSORLG00000029488	ENSORLG00000025907	ENSORLG00000029914	ENSORLG00000005660	ENSORLG00000023534	ENSORLG00000015002	mgat2 (ENSORLG00000014997)	ENSORLG00000014993	rps6kc1 (ENSORLG00000014984) #21	prox1 (ENSORLG00000014947) #22	smyd2b (ENSORLG00000014927)	PTPN14 (ENSORLG00000014908) #24	ENSORLG00000014880	cep57l1 (ENSORLG00000014870)	ENSORLG00000026587	ppil6 (ENSORLG00000014836)	ENSORLG00000024497	msgn1 (ENSORLG00000014828)	mrps10 (ENSORLG00000014824)	tulp4a (ENSORLG00000014814)	tmem181 (ENSORLG00000014790)	gtf2h5 (ENSORLG00000030407)	serac1 (ENSORLG00000014762)	myct1a (ENSORLG00000027514)	ENSORLG00000028886
Chinese medaka	MODERN SPECIES	1302	rpf2 (ENSOSIG00000012048)	slc16a10 (ENSOSIG00000012047)	ENSOSIG00000012042	ENSOSIG00000012039	ENSOSIG00000012038	ENSOSIG00000012036	arf6a (ENSOSIG00000012035)	prpf39 (ENSOSIG00000011663)	faua (ENSOSIG00000011659)	ENSOSIG00000011658	MDGA2 (ENSOSIG00000011384)	ENSOSIG00000011369	mgat2 (ENSOSIG00000011367)	ENSOSIG00000011364	rps6kc1 (ENSOSIG00000011354) #21	prox1a (ENSOSIG00000011334) #22	smyd2b (ENSOSIG00000011282)	PTPN14 (ENSOSIG00000011265) #24	ENSOSIG00000011261	cep57l1 (ENSOSIG00000011256)	ppil6 (ENSOSIG00000011248)	ENSOSIG00000011228	msgn1 (ENSOSIG00000011224)	mrps10 (ENSOSIG00000011222)	tulp4a (ENSOSIG00000023929)	gtf2h5 (ENSOSIG00000023925)	serac1 (ENSOSIG00000023923)	myct1a (ENSOSIG00000023899)	esr1 (ENSOSIG00000023858)	armt1 (ENSOSIG00000023848)	zbtb2b (ENSOSIG00000023846)
Ovalentaria_B	ANCESTRAL SPECIES	17	ENSGT00940000153463.a.c.b	ENSGT00510000047616.a.a	ENSGT00510000047616.a.b	ENSGT00940000155141.w.a	ENSGT00940000175851	ENSGT00940000158349	ENSGT00390000016034	ENSGT00940000166128	ENSGT00950000182902.a.d	ENSGT00940000165510	ENSGT00940000156560.h #26	ENSGT00940000164041.b.a	ENSGT00940000156557.h	ENSGT00530000063085.A.a	ENSGT00940000155656 #21	ENSGT00940000154790.a.a.b #22	ENSGT00940000166832	ENSGT00940000156874 #24	ENSGT00390000016811.h	ENSGT00390000002143.b.a	ENSGT00940000167206	ENSGT01030000234555.a.b.f.a	ENSGT00940000156058	ENSGT00390000003188	ENSGT00940000162190	ENSGT00530000063651.a	ENSGT00950000182963.a.a	ENSGT00940000160412.a	ENSGT00940000157172	ENSGT00940000178326	ENSGT00940000175191
Pomacentridae	ANCESTRAL SPECIES	34	ENSGT00940000153463.a.c.b	ENSGT00510000047616.a.a	ENSGT00510000047616.a.b	ENSGT00940000155141.w.a	ENSGT00940000175851	ENSGT00940000158349	ENSGT00390000016034	ENSGT00940000166128	ENSGT00950000182902.a.d	ENSGT00940000165510	ENSGT00940000156560.h #26	ENSGT00940000164041.b.a	ENSGT00940000156557.h	ENSGT00530000063085.A.a	ENSGT00940000155656 #21	ENSGT00940000154790.a.a.b #22	ENSGT00940000166832	ENSGT00940000156874 #24	ENSGT00390000016811.h	ENSGT00390000002143.b.a	ENSGT00940000167206	ENSGT00940000156058	ENSGT01030000234555.a.b.f.a	ENSGT00390000003188	ENSGT00940000162190	ENSGT00530000063651.a	ENSGT00950000182963.a.a	ENSGT00940000160412.a	ENSGT00940000157172	ENSGT00940000175191	ENSGT00390000017888
Pomacentridae_A	ANCESTRAL SPECIES	33	ENSGT00940000153463.a.c.b	ENSGT00510000047616.a.a	ENSGT00510000047616.a.b	ENSGT00940000155141.w.a	ENSGT00940000175851	ENSGT00940000158349	ENSGT00390000016034	ENSGT00940000166128	ENSGT00950000182902.a.d	ENSGT00940000165510	ENSGT00940000156560.h #26	ENSGT00940000164041.b.a	ENSGT00940000156557.h	ENSGT00530000063085.A.a	ENSGT00940000155656 #21	ENSGT00940000154790.a.a.b #22	ENSGT00940000166832	ENSGT00940000156874 #24	ENSGT00390000016811.h	ENSGT00390000002143.b.a	ENSGT00940000167206	ENSGT00940000156058	ENSGT01030000234555.a.b.f.a	ENSGT00390000003188	ENSGT00940000162190	ENSGT00530000063651.a	ENSGT00950000182963.a.a	ENSGT00940000160412.a	ENSGT00940000157172	ENSGT00940000175191	ENSGT00390000017888
Amphiprion	ANCESTRAL SPECIES	51	ENSGT00950000182906.b.a.i.b	ENSGT00510000047616.a.a	ENSGT00510000047616.a.b	ENSGT00940000155141.w.a	ENSGT00940000175851	ENSGT00940000158349	ENSGT00390000016034	ENSGT00940000166128	ENSGT00950000182902.a.d	ENSGT00940000165510	ENSGT00940000156560.h #26	ENSGT00940000164041.b.a	ENSGT00940000156557.h	ENSGT00530000063085.A.a	ENSGT00940000155656 #21	ENSGT00940000154790.a.a.b #22	ENSGT00940000166832	ENSGT00940000156874.k #24	ENSGT00390000016811.h	ENSGT00390000002143.b.a	ENSGT00940000167206	ENSGT00940000156058	ENSGT01030000234555.a.b.f.a	ENSGT00390000003188	ENSGT00940000162190	ENSGT00530000063651.a	ENSGT00950000182963.a.a	ENSGT00940000160412.a	ENSGT00940000157172	ENSGT00940000175191	ENSGT00390000017888
Orange clownfish	MODERN SPECIES	2	stxbp5a (ENSAPEG00000003052)	ENSAPEG00000003155	ENSAPEG00000003207	ENSAPEG00000003236	ENSAPEG00000003285	gata4 (ENSAPEG00000003312)	fdft1 (ENSAPEG00000003327)	ctsbb (ENSAPEG00000003351)	ABHD1 (ENSAPEG00000003421)	ENSAPEG00000003659	KCNK2 (ENSAPEG00000003734) #26	ENSAPEG00000003766	SNX9 (ENSAPEG00000003792)	ENSAPEG00000003953	rps6kc1 (ENSAPEG00000004027) #21	prox1a (ENSAPEG00000004085) #22	ENSAPEG00000004123	PTPN14 (ENSAPEG00000004182) #24	ENSAPEG00000004234	EFR3B (ENSAPEG00000004292)	ENSAPEG00000004459	parp1 (ENSAPEG00000004784)	ENSAPEG00000004876	lin9 (ENSAPEG00000004895)	mixl1 (ENSAPEG00000004910)	acbd3 (ENSAPEG00000004954)	NHSL1 (ENSAPEG00000004988)	hebp2 (ENSAPEG00000005015)	cmtr1 (ENSAPEG00000005034)	ENSAPEG00000005135	ENSAPEG00000005146
Clown anemonefish	MODERN SPECIES	2044																prox1a (ENSAOCG00000003729) #22	ENSAOCG00000003716	ENSAOCG00000003699 #24
Spiny chromis	MODERN SPECIES	210						gata4 (ENSAPOG00000004084)	fdft1 (ENSAPOG00000004074)	ctsbb (ENSAPOG00000004045)	ABHD1 (ENSAPOG00000003982)	ENSAPOG00000003968	KCNK2 (ENSAPOG00000003936) #26	ENSAPOG00000003897	SNX9 (ENSAPOG00000003851)	ENSAPOG00000003736	rps6kc1 (ENSAPOG00000003689) #21	prox1a (ENSAPOG00000003670) #22	smyd2b (ENSAPOG00000003636)	PTPN14 (ENSAPOG00000003587) #24	ENSAPOG00000003544	EFR3B (ENSAPOG00000003525)
Bicolor damselfish	MODERN SPECIES	714																prox1a (ENSSPAG00000018624) #22	ENSSPAG00000018646	PTPN14 (ENSSPAG00000018687) #24	ENSSPAG00000018747 #24	ENSSPAG00000018755	EFR3B (ENSSPAG00000018787)	ENSSPAG00000018949	ENSSPAG00000019064	parp1 (ENSSPAG00000019074)	lin9 (ENSSPAG00000019155)	mixl1 (ENSSPAG00000019197)	acbd3 (ENSSPAG00000019203)	NHSL1 (ENSSPAG00000019212)	ENSSPAG00000019234
Cichlidae	ANCESTRAL SPECIES	12	ENSGT00940000153463.a.c.b	ENSGT00510000047616.a.a	ENSGT00510000047616.a.b	ENSGT00940000155141.w.a	ENSGT00940000175851	ENSGT00940000158349	ENSGT00390000016034	ENSGT00940000166128	ENSGT00950000182902.a.d	ENSGT00940000165510	ENSGT00940000156560.h #26	ENSGT00940000164041.b.a	ENSGT00940000156557.h	ENSGT00530000063085.A.a	ENSGT00940000155656 #21	ENSGT00940000154790.a.a.b #22	ENSGT00940000166832	ENSGT00940000156874 #24	ENSGT00390000016811.h	ENSGT00390000002143.b.a	ENSGT00940000167206	ENSGT01030000234555.a.b.f.a	ENSGT00940000156058	ENSGT00390000003188	ENSGT00940000162190	ENSGT00530000063651.a	ENSGT00950000182963.a.a	ENSGT00940000160412.a	ENSGT00940000157172	ENSGT00390000017888	ENSGT00390000004915.b
Pseudocrenilabrinae	ANCESTRAL SPECIES	6	ENSGT00940000153463.a.c.b	ENSGT00510000047616.a.a	ENSGT00730000111174.f	ENSGT00510000047616.a.b	ENSGT00940000155141.w.a	ENSGT00940000158349	ENSGT00390000016034	ENSGT00940000166128	ENSGT00950000182902.a.d	ENSGT00940000165510	ENSGT00940000156560.h #26	ENSGT00940000164041.b.a	ENSGT00940000156557.h	ENSGT00530000063085.A.a	ENSGT00940000155656 #21	ENSGT00940000154790.a.a.b #22	ENSGT00940000166832	ENSGT00940000156874 #24	ENSGT00390000016811.h	ENSGT00390000002143.b.a	ENSGT00940000167206	ENSGT01030000234555.a.b.f.a	ENSGT00940000156058	ENSGT00390000003188	ENSGT00940000162190	ENSGT00530000063651.a	ENSGT00950000182963.a.a	ENSGT00940000160412.a	ENSGT00940000157172	ENSGT00390000017888	ENSGT00390000004915.b
Pseudocrenilabrinae_A	ANCESTRAL SPECIES	3	ENSGT00940000153463.a.c.b	ENSGT00510000047616.a.a	ENSGT00730000111174.f	ENSGT00510000047616.a.b	ENSGT00940000155141.w.a	ENSGT00940000158349	ENSGT00390000016034	ENSGT00940000166128	ENSGT00950000182902.a.d	ENSGT00940000165510	ENSGT00940000156560.h #26	ENSGT00940000164041.b.a	ENSGT00940000156557.h	ENSGT00530000063085.A.a	ENSGT00940000155656 #21	ENSGT00940000154790.a.a.b #22	ENSGT00940000166832	ENSGT00940000156874 #24	ENSGT00390000016811.h	ENSGT00390000002143.b.a	ENSGT00940000167206	ENSGT00940000156058	ENSGT01030000234555.a.b.f.a	ENSGT00390000003188	ENSGT00940000162190	ENSGT00530000063651.a	ENSGT00950000182963.a.a	ENSGT00940000160412.a	ENSGT00940000157172	ENSGT00390000017888	ENSGT00390000004915.b
Haplochromini	ANCESTRAL SPECIES	13	ENSGT00510000047616.a.a	ENSGT00730000111174.f	ENSGT00510000047616.a.b	ENSGT00940000155141.w.a	ENSGT00940000158349.p	ENSGT00390000016034	ENSGT00940000166128	ENSGT00950000182902.a.d.d	ENSGT00950000182902.a.d.c	ENSGT00940000165510	ENSGT00940000156560.h #26	ENSGT00940000164041.b.a	ENSGT00940000156557.h	ENSGT00530000063085.A.a	ENSGT00940000155656 #21	ENSGT00940000154790.a.a.b #22	ENSGT00940000166832	ENSGT00940000156874 #24	ENSGT00390000016811.h	ENSGT00390000002143.b.a	ENSGT00940000167206	ENSGT00940000156058	ENSGT01030000234555.a.b.f.a	ENSGT00390000003188	ENSGT00940000162190	ENSGT00530000063651.a	ENSGT00950000182963.a.a	ENSGT00940000160412.a	ENSGT00940000157172	ENSGT00390000017888	ENSGT00390000004915.b
Haplochromini_A	ANCESTRAL SPECIES	11	ENSGT00510000047616.a.a	ENSGT00730000111174.f	ENSGT00510000047616.a.b	ENSGT00940000155141.w.a	ENSGT00940000158349.p	ENSGT00390000016034	ENSGT00940000166128	ENSGT00950000182902.a.d.d	ENSGT00950000182902.a.d.c	ENSGT00940000165510	ENSGT00940000156560.h #26	ENSGT00940000164041.b.a	ENSGT00940000156557.h	ENSGT00530000063085.A.a	ENSGT00940000155656 #21	ENSGT00940000154790.a.a.b #22	ENSGT00940000166832	ENSGT00940000156874 #24	ENSGT00390000016811.h	ENSGT00390000002143.b.a	ENSGT00940000167206	ENSGT00940000156058	ENSGT01030000234555.a.b.f.a	ENSGT00390000003188	ENSGT00940000162190	ENSGT00530000063651.a	ENSGT00950000182963.a.a	ENSGT00940000160412.a	ENSGT00940000157172	ENSGT00390000017888	ENSGT00390000004915.b
Haplochromini_B	ANCESTRAL SPECIES	22	ENSGT00510000047616.a.a	ENSGT00730000111174.f	ENSGT00510000047616.a.b	ENSGT00940000155141.w.a	ENSGT00940000158349.p	ENSGT00390000016034	ENSGT00940000166128.c	ENSGT00950000182902.a.d.d	ENSGT00950000182902.a.d.c	ENSGT00940000165510	ENSGT00940000156560.h #26	ENSGT00940000164041.b.a	ENSGT00940000156557.h	ENSGT00530000063085.A.a	ENSGT00940000155656 #21	ENSGT00940000154790.a.a.b #22	ENSGT00940000166832	ENSGT00940000156874 #24	ENSGT00390000016811.h	ENSGT00390000002143.b.a	ENSGT00940000167206	ENSGT00940000156058	ENSGT01030000234555.a.b.f.a	ENSGT00390000003188	ENSGT00940000162190	ENSGT00530000063651.a	ENSGT00950000182963.a.a	ENSGT00940000160412.a	ENSGT00940000157172	ENSGT00390000017888	ENSGT00390000004915.b
Eastern happy	MODERN SPECIES	6	cfap45 (ENSACLG00000014253)	ENSACLG00000014265	ENSACLG00000014282	gata4 (ENSACLG00000014316)	fdft1 (ENSACLG00000014331)	ctsbb (ENSACLG00000014361)	ENSACLG00000014393	ENSACLG00000014401	ENSACLG00000014418	kcnk2b (ENSACLG00000014487) #26	ENSACLG00000014541	SNX9 (ENSACLG00000014580)	ENSACLG00000014824	rps6kc1 (ENSACLG00000014835) #21	ENSACLG00000014879	prox1a (ENSACLG00000014892) #22	smyd2b (ENSACLG00000014922)	PTPN14 (ENSACLG00000014973) #24	ENSACLG00000015179	EFR3B (ENSACLG00000015187)	ENSACLG00000015404	parp1 (ENSACLG00000015489)	ENSACLG00000015578	ENSACLG00000015586	lin9 (ENSACLG00000015600)	mixl1 (ENSACLG00000015661)	acbd3 (ENSACLG00000015684)	NHSL1 (ENSACLG00000015762)	ENSACLG00000015856	hebp2 (ENSACLG00000015868)	cmtr1 (ENSACLG00000015901)
Zebra mbuna	MODERN SPECIES	1097	cfap45 (ENSMZEG00005016659)	ENSMZEG00005016662	ENSMZEG00005016663	gata4 (ENSMZEG00005016668)	fdft1 (ENSMZEG00005016673)	ctsbb (ENSMZEG00005016681)	ctsbb (ENSMZEG00005016694)	ENSMZEG00005016701	ENSMZEG00005016721	ENSMZEG00005016725	kcnk2b (ENSMZEG00005016731) #26	ENSMZEG00005016750	SNX9 (ENSMZEG00005016760)	ENSMZEG00005016806	rps6kc1 (ENSMZEG00005016813) #21	prox1a (ENSMZEG00005016822) #22	smyd2b (ENSMZEG00005016828)	PTPN14 (ENSMZEG00005016848) #24	ENSMZEG00005016860	EFR3B (ENSMZEG00005016865)	ENSMZEG00005016887	parp1 (ENSMZEG00005016907)	ENSMZEG00005016938	lin9 (ENSMZEG00005016945)	mixl1 (ENSMZEG00005016955)	acbd3 (ENSMZEG00005016962)	NHSL1 (ENSMZEG00005016981)	hebp2 (ENSMZEG00005017010)	cmtr1 (ENSMZEG00005017018)	ENSMZEG00005017039	fbxo25 (ENSMZEG00005017047)
P. nyererei	MODERN SPECIES	353	daam1b (ENSPNYG00000008482)	ppp1r13bb (ENSPNYG00000008590)	cfap45 (ENSPNYG00000008667)	ENSPNYG00000008699	ENSPNYG00000008713	ENSPNYG00000008766	gata4 (ENSPNYG00000008780)	fdft1 (ENSPNYG00000008796)	ENSPNYG00000008838	ENSPNYG00000008873	kcnk2b (ENSPNYG00000008908) #26	ENSPNYG00000009021	SNX9 (ENSPNYG00000009183)	ENSPNYG00000009274	rps6kc1 (ENSPNYG00000009316) #21	prox1a (ENSPNYG00000009378) #22	smyd2b (ENSPNYG00000009401)	PTPN14 (ENSPNYG00000009449) #24	ENSPNYG00000009507	EFR3B (ENSPNYG00000009546)	ENSPNYG00000009613	parp1 (ENSPNYG00000009702)	ENSPNYG00000009756	lin9 (ENSPNYG00000009773)	mixl1 (ENSPNYG00000009793)	acbd3 (ENSPNYG00000009812)	NHSL1 (ENSPNYG00000009859)	hebp2 (ENSPNYG00000009881)	cmtr1 (ENSPNYG00000009903)	ENSPNYG00000009967	fbxo25 (ENSPNYG00000009976)
Burton s mouthbrooder	MODERN SPECIES	276	cfap45 (ENSHBUG00000011608)	ENSHBUG00000011601	ENSHBUG00000011597	ENSHBUG00000011535	gata4 (ENSHBUG00000011525)	fdft1 (ENSHBUG00000000314)	ctsbb (ENSHBUG00000011508)	ENSHBUG00000011479	ENSHBUG00000011462	ENSHBUG00000011231	kcnk2b (ENSHBUG00000011176) #26	ENSHBUG00000011150	SNX9 (ENSHBUG00000011134)	ENSHBUG00000010948	rps6kc1 (ENSHBUG00000010938) #21	prox1a (ENSHBUG00000010886) #22	smyd2b (ENSHBUG00000010878)	PTPN14 (ENSHBUG00000010841) #24	ENSHBUG00000010750	EFR3B (ENSHBUG00000010728)	ENSHBUG00000010620	parp1 (ENSHBUG00000010490)	ENSHBUG00000010414	lin9 (ENSHBUG00000000941)	mixl1 (ENSHBUG00000010251)	acbd3 (ENSHBUG00000000266)	NHSL1 (ENSHBUG00000010193)	hebp2 (ENSHBUG00000010152)	cmtr1 (ENSHBUG00000010146)	ENSHBUG00000010065	fbxo25 (ENSHBUG00000010048)
Lyretail cichlid	MODERN SPECIES	338	ENSNBRG00000018451	cfap45 (ENSNBRG00000018424)	ENSNBRG00000018411	NCOA7 (ENSNBRG00000018393)	gata4 (ENSNBRG00000018383)	fdft1 (ENSNBRG00000018326)	ctsbb (ENSNBRG00000018306)	ENSNBRG00000018182	ENSNBRG00000018131	ENSNBRG00000018096	kcnk2b (ENSNBRG00000018071) #26	ENSNBRG00000017925	SNX9 (ENSNBRG00000017834)	ENSNBRG00000017813	rps6kc1 (ENSNBRG00000017759) #21	prox1a (ENSNBRG00000017729) #22	smyd2b (ENSNBRG00000017696)	PTPN14 (ENSNBRG00000017657) #24	ENSNBRG00000017628	EFR3B (ENSNBRG00000017592)	ENSNBRG00000017502	ENSNBRG00000017476	parp1 (ENSNBRG00000017434)	lin9 (ENSNBRG00000017407)	mixl1 (ENSNBRG00000017395)	acbd3 (ENSNBRG00000017356)	NHSL1 (ENSNBRG00000017331)	hebp2 (ENSNBRG00000017317)	cmtr1 (ENSNBRG00000017272)	ENSNBRG00000017252	fbxo25 (ENSNBRG00000017227)
Nile tilapia	MODERN SPECIES	6	ENSONIG00000013564	ENSONIG00000041404	HINT3 (ENSONIG00000013561)	NCOA7 (ENSONIG00000013557)	gata4 (ENSONIG00000013554)	fdft1 (ENSONIG00000013551)	ctsbb (ENSONIG00000038588)	ctsbb (ENSONIG00000040884)	ABHD1 (ENSONIG00000013550)	ENSONIG00000013541	KCNK2 (ENSONIG00000013538) #26	ENSONIG00000013537	SNX9 (ENSONIG00000013524)	ENSONIG00000013521	rps6kc1 (ENSONIG00000038709) #21	prox1a (ENSONIG00000013518) #22	ENSONIG00000013514	PTPN14 (ENSONIG00000013508) #24	ENSONIG00000013507	EFR3B (ENSONIG00000013501)	ENSONIG00000013497	parp1 (ENSONIG00000013486)	ENSONIG00000020898	lin9 (ENSONIG00000013480)	mixl1 (ENSONIG00000013479)	acbd3 (ENSONIG00000013477)	NHSL1 (ENSONIG00000037725)	hebp2 (ENSONIG00000043073)	ENSONIG00000030007	cmtr1 (ENSONIG00000013469)	ENSONIG00000040800
Midas cichlid	MODERN SPECIES	271	ppp1r13bb (ENSACIG00000004683)	ENSACIG00000004714	ENSACIG00000004761	ENSACIG00000004773	ENSACIG00000004787	gata4 (ENSACIG00000004792)	fdft1 (ENSACIG00000004817)	ctsbb (ENSACIG00000004873)	ENSACIG00000004910	ENSACIG00000005027	kcnk2b (ENSACIG00000005070) #26	ENSACIG00000005130	SNX9 (ENSACIG00000005187)	ENSACIG00000005222	rps6kc1 (ENSACIG00000005250) #21	prox1a (ENSACIG00000005302) #22	ENSACIG00000005314	PTPN14 (ENSACIG00000005336) #24	POMC (ENSACIG00000005372)	EFR3B (ENSACIG00000005402)	ENSACIG00000005449	parp1 (ENSACIG00000005651)	ENSACIG00000005709	lin9 (ENSACIG00000005720)	mixl1 (ENSACIG00000005755)	acbd3 (ENSACIG00000005772)	NHSL1 (ENSACIG00000005795)	hebp2 (ENSACIG00000005815)	cmtr1 (ENSACIG00000005878)	ENSACIG00000005916	fbxo25 (ENSACIG00000005933)
Percomorphaceae_C	ANCESTRAL SPECIES	19	ENSGT00940000153463.a.c.b	ENSGT00510000047616.a.a	ENSGT00510000047616.a.b	ENSGT00940000155141.w.a	ENSGT00940000175851	ENSGT00940000158349	ENSGT00390000016034	ENSGT00940000166128	ENSGT00950000182902.a.d	ENSGT00940000165510	ENSGT00940000156560.h #26	ENSGT00940000164041.b.a	ENSGT00940000156557.h	ENSGT00530000063085.A.a	ENSGT00940000155656 #21	ENSGT00940000154790.a.a.b #22	ENSGT00940000166832	ENSGT00940000156874 #24	ENSGT00390000016811.h	ENSGT00390000002143.b.a	ENSGT00940000167206	ENSGT01030000234555.a.b.f.a	ENSGT00940000156058	ENSGT00390000003188	ENSGT00940000162190	ENSGT00530000063651.a	ENSGT00950000182963.a.a	ENSGT00940000160412.a	ENSGT00940000157172	ENSGT00940000178326	ENSGT00940000175191
Eupercaria	ANCESTRAL SPECIES	16	ENSGT00940000156452.a.a	ENSGT00940000153463.a.c.b	ENSGT00510000047616.a.a	ENSGT00510000047616.a.b	ENSGT00940000155141.w.a	ENSGT00940000158349	ENSGT00390000016034	ENSGT00940000166128	ENSGT00950000182902.a.d	ENSGT00940000165510	ENSGT00940000156560.h #26	ENSGT00940000164041.b.a	ENSGT00940000156557.h	ENSGT00530000063085.A.a	ENSGT00940000155656 #21	ENSGT00940000154790.a.a.b #22	ENSGT00940000166832	ENSGT00940000156874 #24	ENSGT00390000016811.h	ENSGT00390000002143.b.a	ENSGT00940000167206	ENSGT01030000234555.a.b.f.a	ENSGT00940000156058	ENSGT00390000003188	ENSGT00940000162190	ENSGT00530000063651.a	ENSGT00950000182963.a.a	ENSGT00940000160412.a	ENSGT00940000157172	ENSGT00940000175191	ENSGT00390000017888
Tetraodontidae	ANCESTRAL SPECIES	15	ENSGT00940000156452.a.a	ENSGT00940000153463.a.c.b	ENSGT00510000047616.a.a	ENSGT00510000047616.a.b	ENSGT00940000155141.w.a	ENSGT00940000158349	ENSGT00390000016034	ENSGT00940000166128	ENSGT00950000182902.a.d	ENSGT00940000165510	ENSGT00940000156560.h #26	ENSGT00940000164041.b.a	ENSGT00940000156557.h	ENSGT00530000063085.A.a	ENSGT00940000155656 #21	ENSGT00940000154790.a.a.b #22	ENSGT00940000166832	ENSGT00940000156874 #24	ENSGT00940000169582	ENSGT00390000002143.b.a	ENSGT00940000167206	ENSGT00940000156058	ENSGT01030000234555.a.b.f.a	ENSGT00390000003188	ENSGT00940000162190	ENSGT00530000063651.a	ENSGT00950000182963.a.a	ENSGT00940000157172	ENSGT00940000175191	ENSGT00390000017888	ENSGT00390000004915.b
Fugu	MODERN SPECIES	7	daam1b (ENSTRUG00000011584)	ppp1r13bb (ENSTRUG00000011779)	ENSTRUG00000011980	ENSTRUG00000025277	NCOA7 (ENSTRUG00000012001)	gata4 (ENSTRUG00000012112)	fdft1 (ENSTRUG00000012217)	ctsbb (ENSTRUG00000012315)	ABHD1 (ENSTRUG00000012547)	ENSTRUG00000012659	kcnk2b (ENSTRUG00000013276) #26	ENSTRUG00000013428	SNX9 (ENSTRUG00000013436)	ENSTRUG00000031803	rps6kc1 (ENSTRUG00000013791) #21	prox1a (ENSTRUG00000013890) #22	smyd2b (ENSTRUG00000013934)	PTPN14 (ENSTRUG00000014100) #24	ENSTRUG00000014199	EFR3B (ENSTRUG00000014212)	ENSTRUG00000031424	parp1 (ENSTRUG00000014490)	ENSTRUG00000014471	lin9 (ENSTRUG00000014637)	mixl1 (ENSTRUG00000014706)	acbd3 (ENSTRUG00000014718)	NHSL1 (ENSTRUG00000014757)	cmtr1 (ENSTRUG00000014780)	ENSTRUG00000024795	ENSTRUG00000020932	fbxo25 (ENSTRUG00000014872)
Tetraodon	MODERN SPECIES	5	SGPP1 (ENSTNIG00000016363)	kcnh5a (ENSTNIG00000016364)	daam1b (ENSTNIG00000016365)	ppp1r13bb (ENSTNIG00000016366)	ENSTNIG00000016367	NCOA7 (ENSTNIG00000016368)	gata4 (ENSTNIG00000016369)	fdft1 (ENSTNIG00000016370)	ABHD1 (ENSTNIG00000016371)	ENSTNIG00000016372	kcnk2b (ENSTNIG00000016373) #26	ENSTNIG00000016374	SNX9 (ENSTNIG00000016375)	ENSTNIG00000016376	rps6kc1 (ENSTNIG00000016377) #21	prox1a (ENSTNIG00000016378) #22	smyd2b (ENSTNIG00000016379)	PTPN14 (ENSTNIG00000016380) #24	ENSTNIG00000016381	EFR3B (ENSTNIG00000016382)	ENSTNIG00000016383	parp1 (ENSTNIG00000016384)	lin9 (ENSTNIG00000016385)	mixl1 (ENSTNIG00000016386)	acbd3 (ENSTNIG00000016387)	NHSL1 (ENSTNIG00000016388)	susd6 (ENSTNIG00000016389)	acot22 (ENSTNIG00000016390)	slc35b2 (ENSTNIG00000016391)	nfkbie (ENSTNIG00000016392)	tmem151ba (ENSTNIG00000016393)
Eupecaria_A	ANCESTRAL SPECIES	16	ENSGT00940000156452.a.a	ENSGT00940000153463.a.c.b	ENSGT00510000047616.a.a	ENSGT00510000047616.a.b	ENSGT00940000155141.w.a	ENSGT00940000158349	ENSGT00390000016034	ENSGT00940000166128	ENSGT00950000182902.a.d	ENSGT00940000165510	ENSGT00940000156560.h #26	ENSGT00940000164041.b.a	ENSGT00940000156557.h	ENSGT00530000063085.A.a	ENSGT00940000155656 #21	ENSGT00940000154790.a.a.b #22	ENSGT00940000166832	ENSGT00940000156874 #24	ENSGT00390000016811.h	ENSGT00390000002143.b.a	ENSGT00940000167206	ENSGT01030000234555.a.b.f.a	ENSGT00940000156058	ENSGT00390000003188	ENSGT00940000162190	ENSGT00530000063651.a	ENSGT00950000182963.a.a	ENSGT00940000160412.a	ENSGT00940000157172	ENSGT00940000175191	ENSGT00940000178326
Ballan wrasse	MODERN SPECIES	281	daam1b (ENSLBEG00000011322)	ppp1r13bb (ENSLBEG00000011620)	ENSLBEG00000011756	ENSLBEG00000011798	NCOA7 (ENSLBEG00000011818)	gata4 (ENSLBEG00000011847)	fdft1 (ENSLBEG00000011877)	ctsbb (ENSLBEG00000011916)	ABHD1 (ENSLBEG00000011941)	ENSLBEG00000011980	kcnk2b (ENSLBEG00000012028) #26	ENSLBEG00000012058	SNX9 (ENSLBEG00000012148)	rps6kc1 (ENSLBEG00000012402) #21	ENSLBEG00000012476	prox1a (ENSLBEG00000012512) #22	smyd2b (ENSLBEG00000012530)	PTPN14 (ENSLBEG00000012576) #24	POMC (ENSLBEG00000012631)	EFR3B (ENSLBEG00000012761)	ENSLBEG00000012976	parp1 (ENSLBEG00000013376)	ENSLBEG00000013470	ENSLBEG00000013489	lin9 (ENSLBEG00000013506)	mixl1 (ENSLBEG00000013538)	acbd3 (ENSLBEG00000013560)	ENSLBEG00000013583
Eupecaria_B	ANCESTRAL SPECIES	16	ENSGT00940000156452.a.a	ENSGT00940000153463.a.c.b	ENSGT00510000047616.a.a	ENSGT00510000047616.a.b	ENSGT00940000155141.w.a	ENSGT00940000158349	ENSGT00390000016034	ENSGT00940000166128	ENSGT00950000182902.a.d	ENSGT00940000165510	ENSGT00940000156560.h #26	ENSGT00940000164041.b.a	ENSGT00940000156557.h	ENSGT00530000063085.A.a	ENSGT00940000155656 #21	ENSGT00940000154790.a.a.b #22	ENSGT00940000166832	ENSGT00940000156874 #24	ENSGT00390000016811.h	ENSGT00390000002143.b.a	ENSGT00940000167206	ENSGT01030000234555.a.b.f.a	ENSGT00940000156058	ENSGT00390000003188	ENSGT00940000162190	ENSGT00530000063651.a	ENSGT00950000182963.a.a	ENSGT00940000160412.a	ENSGT00940000157172	ENSGT00940000175191	ENSGT00940000178326
Perciformes	ANCESTRAL SPECIES	14	ENSGT00950000182825.A.a.b.a.b.a.a.a.a.b.td	ENSGT00940000153463.a.c.b	ENSGT00510000047616.a.a	ENSGT00510000047616.a.b	ENSGT00940000155141.w.a	ENSGT00940000158349	ENSGT00390000016034	ENSGT00940000166128	ENSGT00950000182902.a.d	ENSGT00940000165510	ENSGT00940000156560.h #26	ENSGT00940000164041.b.a	ENSGT00940000156557.h	ENSGT00530000063085.A.a	ENSGT00940000155656 #21	ENSGT00940000154790.a.a.b #22	ENSGT00940000166832	ENSGT00940000156874 #24	ENSGT00390000016811.h	ENSGT00390000002143.b.a	ENSGT00940000167206	ENSGT01030000234555.a.b.f.a	ENSGT00940000156058	ENSGT00390000003188	ENSGT00940000162190	ENSGT00530000063651.a	ENSGT00950000182963.a.a	ENSGT00940000160412.a	ENSGT00940000157172	ENSGT00940000175191	ENSGT00940000178326
Perciformes_a	ANCESTRAL SPECIES	15	ENSGT00950000182825.A.a.b.a.b.a.a.a.a.b.td	ENSGT00940000153463.a.c.b	ENSGT00510000047616.a.a	ENSGT00510000047616.a.b	ENSGT00940000155141.w.a	ENSGT00940000158349	ENSGT00390000016034	ENSGT00940000166128	ENSGT00950000182902.a.d	ENSGT00940000165510	ENSGT00940000156560.h #26	ENSGT00940000164041.b.a	ENSGT00940000156557.h	ENSGT00530000063085.A.a	ENSGT00940000155656 #21	ENSGT00940000154790.a.a.b #22	ENSGT00940000166832	ENSGT00940000156874 #24	ENSGT00390000016811.h	ENSGT00390000002143.b.a	ENSGT00940000167206	ENSGT01030000234555.a.b.f.a	ENSGT00940000156058	ENSGT00390000003188	ENSGT00940000162190	ENSGT00530000063651.a	ENSGT00950000182963.a.a	ENSGT00940000160412.a	ENSGT00940000157172	ENSGT00940000175191	ENSGT00940000178326
Channel bull blenny	MODERN SPECIES	16	ENSCGOG00000010907	ppp1r13bb (ENSCGOG00000010751)	ENSCGOG00000010745	ENSCGOG00000010738	NCOA7 (ENSCGOG00000010652)	gata4 (ENSCGOG00000010645)	fdft1 (ENSCGOG00000010611)	ctsbb (ENSCGOG00000010609)	ABHD1 (ENSCGOG00000010606)	ENSCGOG00000010605	kcnk2b (ENSCGOG00000010602) #26	ENSCGOG00000010582	SNX9 (ENSCGOG00000009988)	ENSCGOG00000009971	rps6kc1 (ENSCGOG00000009926) #21	prox1a (ENSCGOG00000009922) #22	smyd2b (ENSCGOG00000019171)	PTPN14 (ENSCGOG00000019064) #24	ENSCGOG00000019054	EFR3B (ENSCGOG00000018559)	ENSCGOG00000018542	ENSCGOG00000018541	ENSCGOG00000018540	parp1 (ENSCGOG00000017502)	lin9 (ENSCGOG00000017318)	mixl1 (ENSCGOG00000017313)	acbd3 (ENSCGOG00000017312)	NHSL1 (ENSCGOG00000017307)	hebp2 (ENSCGOG00000017306)	cmtr1 (ENSCGOG00000016874)	ENSCGOG00000016838
Pike perch	MODERN SPECIES	4	daam1b (ENSSLUG00000025047)	ppp1r13bb (ENSSLUG00000024949)	ENSSLUG00000024920	ENSSLUG00000024916	NCOA7 (ENSSLUG00000024913)	gata4 (ENSSLUG00000024907)	fdft1 (ENSSLUG00000024901)	ctsbb (ENSSLUG00000024893)	ABHD1 (ENSSLUG00000024886)	ENSSLUG00000024885	KCNK2 (ENSSLUG00000024884) #26	ENSSLUG00000024883	SNX9 (ENSSLUG00000024777)	ENSSLUG00000024761	rps6kc1 (ENSSLUG00000024757) #21	prox1a (ENSSLUG00000024753) #22	smyd2b (ENSSLUG00000024711)	PTPN14 (ENSSLUG00000024691) #24	POMC (ENSSLUG00000024688)	EFR3B (ENSSLUG00000024646)	ENSSLUG00000024618	ENSSLUG00000024613	ENSSLUG00000024611	parp1 (ENSSLUG00000024586)	lin9 (ENSSLUG00000024496)	mixl1 (ENSSLUG00000024484)	acbd3 (ENSSLUG00000024482)	NHSL1 (ENSSLUG00000024473)	hebp2 (ENSSLUG00000024469)	cmtr1 (ENSSLUG00000024337)	ENSSLUG00000024314
Cottioidei	ANCESTRAL SPECIES	23	ENSGT00940000156452.a.a	ENSGT00940000153463.a.c.b	ENSGT00510000047616.a.a	ENSGT00510000047616.a.b	ENSGT00940000155141.w.a	ENSGT00940000158349	ENSGT00390000016034	ENSGT00940000166128	ENSGT00950000182902.a.d	ENSGT00940000165510	ENSGT00940000156560.h #26	ENSGT00940000164041.b.a	ENSGT00940000156557.h	ENSGT00530000063085.A.a	ENSGT00940000155656 #21	ENSGT00940000154790.a.a.b #22	ENSGT00940000166832	ENSGT00940000156874 #24	ENSGT00390000016811.h	ENSGT00390000002143.b.a	ENSGT00940000167206	ENSGT01030000234555.a.b.f.a	ENSGT00940000156058	ENSGT00390000003188	ENSGT00940000162190	ENSGT00530000063651.a	ENSGT00950000182963.a.a	ENSGT00940000160412.a	ENSGT00940000157172	ENSGT00390000017888	ENSGT00390000004915.b
Lumpfish	MODERN SPECIES	16	daam1b (ENSCLMG00005019800)	ENSCLMG00005019926	ppp1r13bb (ENSCLMG00005019938)	ENSCLMG00005020407	ENSCLMG00005020408	NCOA7 (ENSCLMG00005020409)	gata4 (ENSCLMG00005020428)	fdft1 (ENSCLMG00005020429)	ctsbb (ENSCLMG00005020430)	ABHD1 (ENSCLMG00005020431)	kcnk2b (ENSCLMG00005020436) #26	ENSCLMG00005007418	SNX9 (ENSCLMG00005007434)	ENSCLMG00005008032	rps6kc1 (ENSCLMG00005008035) #21	prox1a (ENSCLMG00005008036) #22	smyd2b (ENSCLMG00005008038)	PTPN14 (ENSCLMG00005008040) #24	ENSCLMG00005008042	EFR3B (ENSCLMG00005008070)	ENSCLMG00005010816	parp1 (ENSCLMG00005010833)	ENSCLMG00005010896	lin9 (ENSCLMG00005010900)	mixl1 (ENSCLMG00005010931)	acbd3 (ENSCLMG00005010932)	NHSL1 (ENSCLMG00005010934)	fbxo25 (ENSCLMG00005010935)	FAM110C (ENSCLMG00005010936)	ACP1 (ENSCLMG00005010938)	ENSCLMG00005010939
Stickleback	MODERN SPECIES	18	L3HYPDH (ENSGACG00000010318)	daam1b (ENSGACG00000010299)	ppp1r13bb (ENSGACG00000010288)	ENSGACG00000010284	NCOA7 (ENSGACG00000010278)	gata4 (ENSGACG00000010274)	fdft1 (ENSGACG00000010266)	ctsbb (ENSGACG00000010234)	ABHD1 (ENSGACG00000010221)	ENSGACG00000010204	kcnk2b (ENSGACG00000010191) #26	ENSGACG00000010188	SNX9 (ENSGACG00000010171)	ENSGACG00000010160	rps6kc1 (ENSGACG00000010144) #21	prox1a (ENSGACG00000010140) #22	smyd2b (ENSGACG00000010127)	PTPN14 (ENSGACG00000010112) #24	POMC (ENSGACG00000010098)	EFR3B (ENSGACG00000010088)	ENSGACG00000010084	ENSGACG00000010081	ENSGACG00000010074	ENSGACG00000010071	taf1a (ENSGACG00000010065)	DUSP10 (ENSGACG00000010062)	hlx1 (ENSGACG00000010057)	slc35f6 (ENSGACG00000010044)	kcnk3a (ENSGACG00000010038)	enpp1 (ENSGACG00000010030)	ENSGACG00000010022
Eupecaria_C	ANCESTRAL SPECIES	16	ENSGT00940000156452.a.a	ENSGT00940000153463.a.c.b	ENSGT00510000047616.a.a	ENSGT00510000047616.a.b	ENSGT00940000155141.w.a	ENSGT00940000158349	ENSGT00390000016034	ENSGT00940000166128	ENSGT00950000182902.a.d	ENSGT00940000165510	ENSGT00940000156560.h #26	ENSGT00940000164041.b.a	ENSGT00940000156557.h	ENSGT00530000063085.A.a	ENSGT00940000155656 #21	ENSGT00940000154790.a.a.b #22	ENSGT00940000166832	ENSGT00940000156874 #24	ENSGT00390000016811.h	ENSGT00390000002143.b.a	ENSGT00940000167206	ENSGT01030000234555.a.b.f.a	ENSGT00940000156058	ENSGT00390000003188	ENSGT00940000162190	ENSGT00530000063651.a	ENSGT00950000182963.a.a	ENSGT00940000160412.a	ENSGT00940000157172	ENSGT00390000017888	ENSGT00390000004915.b
Eupercaria_incertae_sedis	ANCESTRAL SPECIES	11	ENSGT00940000156452.a.a	ENSGT00940000153463.a.c.b	ENSGT00510000047616.a.a	ENSGT00510000047616.a.b	ENSGT00940000155141.w.a	ENSGT00940000158349	ENSGT00390000016034	ENSGT00940000166128	ENSGT00950000182902.a.d	ENSGT00940000165510	ENSGT00940000156560.h #26	ENSGT00940000164041.b.a	ENSGT00940000156557.h	ENSGT00530000063085.A.a	ENSGT00940000155656 #21	ENSGT00940000154790.a.a.b #22	ENSGT00940000166832	ENSGT00940000156874 #24	ENSGT00390000016811.h	ENSGT00390000002143.b.a	ENSGT00940000167206	ENSGT01030000234555.a.b.f.a	ENSGT00940000156058	ENSGT00390000003188	ENSGT00940000162190	ENSGT00530000063651.a	ENSGT00950000182963.a.a	ENSGT00940000160412.a	ENSGT00940000157172	ENSGT00390000017888	ENSGT00390000004915.b
European seabass	MODERN SPECIES	7	ENSDLAG00005031391	ENSDLAG00005011986	ENSDLAG00005012000	ENSDLAG00005012214	ENSDLAG00005029515	ENSDLAG00005012798	gata4 (ENSDLAG00005013161)	ENSDLAG00005013169	ctsbb (ENSDLAG00005013196)	ENSDLAG00005013383	ENSDLAG00005013494 #26	ENSDLAG00005028616	ENSDLAG00005013558	ENSDLAG00005014625	RPS6KC1 (ENSDLAG00005014671) #21	ENSDLAG00005014708 #22	ENSDLAG00005014736	PTPN14 (ENSDLAG00005014848) #24	ENSDLAG00005014915	ENSDLAG00005014876	ENSDLAG00005016701	parp1 (ENSDLAG00005016955)	ENSDLAG00005019347	lin9 (ENSDLAG00005019351)	mixl1 (ENSDLAG00005019378)	acbd3 (ENSDLAG00005019380)	ENSDLAG00005033327	hebp2 (ENSDLAG00005019396)	ENSDLAG00005019404	tmem214 (ENSDLAG00005000178)	ENSDLAG00005000225
Large yellow croaker	MODERN SPECIES	482	daam1b (ENSLCRG00005011689)	ppp1r13bb (ENSLCRG00005010456)	ENSLCRG00005010449	si:dkey-25e12.3 (ENSLCRG00005010447)	NCOA7 (ENSLCRG00005009596)	gata4 (ENSLCRG00005009583)	fdft1 (ENSLCRG00005009578)	ctsbb (ENSLCRG00005009524)	ABHD1 (ENSLCRG00005009513)	ENSLCRG00005009512	kcnk2b (ENSLCRG00005009511) #26	ENSLCRG00005009510	SNX9 (ENSLCRG00005009496)	ENSLCRG00005009495	rps6kc1 (ENSLCRG00005009484) #21	prox1a (ENSLCRG00005009483) #22	smyd2b (ENSLCRG00005009480)	PTPN14 (ENSLCRG00005009468) #24	POMC (ENSLCRG00005009467)	EFR3B (ENSLCRG00005006400)	ENSLCRG00005006362	ENSLCRG00005006360	ENSLCRG00005006359	parp1 (ENSLCRG00005006264)	lin9 (ENSLCRG00005006194)	mixl1 (ENSLCRG00005006191)	acbd3 (ENSLCRG00005006190)	NHSL1 (ENSLCRG00005006187)	hebp2 (ENSLCRG00005006181)	cmtr1 (ENSLCRG00005005999)	ENSLCRG00005005992
Gilthead seabream	MODERN SPECIES	14	daam1b (ENSSAUG00010006758)	ppp1r13bb (ENSSAUG00010004582)	ENSSAUG00010004531	ENSSAUG00010004528	NCOA7 (ENSSAUG00010003134)	gata4 (ENSSAUG00010003096)	fdft1 (ENSSAUG00010003090)	ctsbb (ENSSAUG00010003083)	ABHD1 (ENSSAUG00010002895)	ENSSAUG00010002831	kcnk2b (ENSSAUG00010002808) #26	ENSSAUG00010002790	SNX9 (ENSSAUG00010023203)	ENSSAUG00010023188	rps6kc1 (ENSSAUG00010023181) #21	prox1a (ENSSAUG00010023176) #22	smyd2b (ENSSAUG00010023147)	PTPN14 (ENSSAUG00010023138) #24	POMC (ENSSAUG00010023137)	EFR3B (ENSSAUG00010021750)	ENSSAUG00010020677	ENSSAUG00010020653	parp1 (ENSSAUG00010020592)	lin9 (ENSSAUG00010020567)	mixl1 (ENSSAUG00010020566)	acbd3 (ENSSAUG00010020565)	NHSL1 (ENSSAUG00010020561)	hebp2 (ENSSAUG00010020560)	cmtr1 (ENSSAUG00010020549)	ENSSAUG00010020544	fbxo25 (ENSSAUG00010020542)
Percomorphaceae_D	ANCESTRAL SPECIES	18	ENSGT00940000153463.a.c.b	ENSGT00510000047616.a.a	ENSGT00510000047616.a.b	ENSGT00940000155141.w.a	ENSGT00940000175851	ENSGT00940000158349	ENSGT00390000016034	ENSGT00940000166128	ENSGT00950000182902.a.d	ENSGT00940000165510	ENSGT00940000156560.h #26	ENSGT00940000164041.b.a	ENSGT00940000156557.h	ENSGT00530000063085.A.a	ENSGT00940000155656 #21	ENSGT00940000154790.a.a.b #22	ENSGT00940000166832	ENSGT00940000156874 #24	ENSGT00390000016811.h	ENSGT00390000002143.b.a	ENSGT00940000167206	ENSGT01030000234555.a.b.f.a	ENSGT00940000156058	ENSGT00390000003188	ENSGT00940000162190	ENSGT00530000063651.a	ENSGT00950000182963.a.a	ENSGT00940000160412.a	ENSGT00940000157172	ENSGT00940000175191	ENSGT00390000017888
Anabantaria	ANCESTRAL SPECIES	20	ENSGT00940000156452.a.a	ENSGT00940000153463.a.c.b	ENSGT00510000047616.a.a	ENSGT00510000047616.a.b	ENSGT00940000155141.w.a	ENSGT00940000158349	ENSGT00390000016034	ENSGT00940000166128	ENSGT00950000182902.a.d	ENSGT00940000165510	ENSGT00940000156560.h #26	ENSGT00940000164041.b.a	ENSGT00940000156557.h	ENSGT00530000063085.A.a	ENSGT00940000155656 #21	ENSGT00940000154790.a.a.b #22	ENSGT00940000166832	ENSGT00940000156874 #24	ENSGT00390000016811.h	ENSGT00390000002143.b.a	ENSGT00940000167206	ENSGT01030000234555.a.b.f.a	ENSGT00940000156058	ENSGT00390000003188	ENSGT00940000162190	ENSGT00530000063651.a	ENSGT00950000182963.a.a	ENSGT00940000160412.a	ENSGT00940000157172	ENSGT00940000175191	ENSGT00390000017888
Anabantoidei	ANCESTRAL SPECIES	15	ENSGT00940000156452.a.a	ENSGT00940000153463.a.c.b	ENSGT00510000047616.a.a	ENSGT00510000047616.a.b	ENSGT00940000155141.w.a	ENSGT00940000158349	ENSGT00390000016034	ENSGT00940000166128	ENSGT00950000182902.a.d	ENSGT00940000165510	ENSGT00940000156560.h #26	ENSGT00940000164041.b.a	ENSGT00940000156557.h	ENSGT00530000063085.A.a	ENSGT00940000155656 #21	ENSGT00940000154790.a.a.b #22	ENSGT00940000166832	ENSGT00940000156874 #24	ENSGT00390000016811.h	ENSGT00390000002143.b.a	ENSGT00940000167206	ENSGT01030000234555.a.b.f.a	ENSGT00940000156058	ENSGT00390000003188	ENSGT00940000162190	ENSGT00530000063651.a	ENSGT00950000182963.a.a	ENSGT00940000160412.a	ENSGT00940000157172	ENSGT00940000178326	ENSGT00940000175191
Climbing perch	MODERN SPECIES	15	ENSATEG00000008155	HINT3 (ENSATEG00000026864)	ENSATEG00000008225	ENSATEG00000029505	gata4 (ENSATEG00000008328)	ENSATEG00000008409	ctsbb (ENSATEG00000008504)	ENSATEG00000009575	ENSATEG00000009586	ENSATEG00000009677 #26	ENSATEG00000009730	ENSATEG00000009787	ENSATEG00000027949	ENSATEG00000009814	RPS6KC1 (ENSATEG00000009883) #21	ENSATEG00000009952 #22	ENSATEG00000009976	PTPN14 (ENSATEG00000010022) #24	ENSATEG00000010127	ENSATEG00000010150	ENSATEG00000010288	parp1 (ENSATEG00000010457)	ENSATEG00000010529	lin9 (ENSATEG00000010544)	mixl1 (ENSATEG00000010551)	acbd3 (ENSATEG00000010586)	ENSATEG00000010607	hebp2 (ENSATEG00000010691)	cmtr1 (ENSATEG00000010704)	ENSATEG00000025486	fbxo25 (ENSATEG00000010785)
Siamese fighting fish	MODERN SPECIES	13	ENSBSLG00000009534	ppp1r13bb (ENSBSLG00000009560)	ENSBSLG00000010642	ENSBSLG00000010745	NCOA7 (ENSBSLG00000010837)	gata4 (ENSBSLG00000011585)	fdft1 (ENSBSLG00000011660)	ctsbb (ENSBSLG00000011798)	ABHD1 (ENSBSLG00000013108)	ENSBSLG00000013217	kcnk2b (ENSBSLG00000013371) #26	ENSBSLG00000013407	SNX9 (ENSBSLG00000013570)	ENSBSLG00000015369	rps6kc1 (ENSBSLG00000015461) #21	prox1a (ENSBSLG00000016632) #22	smyd2b (ENSBSLG00000016749)	PTPN14 (ENSBSLG00000017031) #24	ENSBSLG00000017191	EFR3B (ENSBSLG00000017291)	ENSBSLG00000018775	parp1 (ENSBSLG00000018953)	ENSBSLG00000020145	lin9 (ENSBSLG00000021111)	mixl1 (ENSBSLG00000021303)	acbd3 (ENSBSLG00000021371)	NHSL1 (ENSBSLG00000021391)	hebp2 (ENSBSLG00000021445)	cmtr1 (ENSBSLG00000021493)	ENSBSLG00000022321	ENSBSLG00000022342
Zig-zag eel	MODERN SPECIES	16	ENSMAMG00000018056	ENSMAMG00000020447	ENSMAMG00000020482	ENSMAMG00000020489	ENSMAMG00000020498	gata4 (ENSMAMG00000020506)	ENSMAMG00000020523	ctsbb (ENSMAMG00000020531)	ENSMAMG00000020534	ENSMAMG00000025008	ENSMAMG00000020549 #26	ENSMAMG00000020556	ENSMAMG00000025814	ENSMAMG00000020581	RPS6KC1 (ENSMAMG00000020585) #21	ENSMAMG00000020589 #22	ENSMAMG00000020596	PTPN14 (ENSMAMG00000020605) #24	ENSMAMG00000020630	ENSMAMG00000020634	parp1 (ENSMAMG00000020652)	ENSMAMG00000020667	lin9 (ENSMAMG00000020671)	mixl1 (ENSMAMG00000020679)	acbd3 (ENSMAMG00000020682)	ENSMAMG00000020693	hebp2 (ENSMAMG00000020703)	cmtr1 (ENSMAMG00000020706)	ENSMAMG00000020727	ENSMAMG00000020736	fbxo25 (ENSMAMG00000024715)
Carangaria	ANCESTRAL SPECIES	18	ENSGT00940000153463.a.c.b	ENSGT00510000047616.a.a	ENSGT00510000047616.a.b	ENSGT00940000155141.w.a	ENSGT00940000175851	ENSGT00940000158349	ENSGT00390000016034	ENSGT00940000166128	ENSGT00950000182902.a.d	ENSGT00940000165510	ENSGT00940000156560.h #26	ENSGT00940000164041.b.a	ENSGT00940000156557.h	ENSGT00530000063085.A.a	ENSGT00940000155656 #21	ENSGT00940000154790.a.a.b #22	ENSGT00940000166832	ENSGT00940000156874 #24	ENSGT00390000016811.h	ENSGT00390000002143.b.a	ENSGT00940000167206	ENSGT01030000234555.a.b.f.a	ENSGT00940000156058	ENSGT00390000003188	ENSGT00940000162190	ENSGT00530000063651.a	ENSGT00950000182963.a.a	ENSGT00940000160412.a	ENSGT00940000157172	ENSGT00940000175191	ENSGT00390000017888
Pleuronectoidei	ANCESTRAL SPECIES	11	ENSGT00940000153463.a.c.b	ENSGT00510000047616.a.a	ENSGT00510000047616.a.b	ENSGT00940000155141.w.a	ENSGT00940000175851	ENSGT00940000158349	ENSGT00390000016034	ENSGT00940000166128	ENSGT00950000182902.a.d	ENSGT00940000165510	ENSGT00940000156560.h #26	ENSGT00940000164041.b.a	ENSGT00940000156557.h	ENSGT00530000063085.A.a	ENSGT00940000155656 #21	ENSGT00940000154790.a.a.b #22	ENSGT00940000166832	ENSGT00940000156874 #24	ENSGT00390000016811.h	ENSGT00390000002143.b.a	ENSGT00940000167206	ENSGT01030000234555.a.b.f.a	ENSGT00940000156058	ENSGT00390000003188	ENSGT00940000162190	ENSGT00530000063651.a	ENSGT00950000182963.a.a	ENSGT00940000160412.a	ENSGT00940000157172	ENSGT00940000178326	ENSGT00940000175191
Turbot	MODERN SPECIES	12	ENSSMAG00000012524	ENSSMAG00000012563	ENSSMAG00000012682	ENSSMAG00000012751	ENSSMAG00000012765	ENSSMAG00000012775	gata4 (ENSSMAG00000012793)	ENSSMAG00000012802	ctsbb (ENSSMAG00000012842)	ENSSMAG00000012908	ENSSMAG00000012915	ENSSMAG00000012945 #26	ENSSMAG00000012973	ENSSMAG00000013039	RPS6KC1 (ENSSMAG00000013161) #21	ENSSMAG00000013176 #22	ENSSMAG00000013183	PTPN14 (ENSSMAG00000013207) #24	ENSSMAG00000013286	ENSSMAG00000013293	ENSSMAG00000013339	parp1 (ENSSMAG00000013799)	lin9 (ENSSMAG00000013873)	mixl1 (ENSSMAG00000013894)	acbd3 (ENSSMAG00000013907)	ENSSMAG00000013936	hebp2 (ENSSMAG00000024613)	cmtr1 (ENSSMAG00000014027)	ENSSMAG00000024591	fbxo25 (ENSSMAG00000014107)	ENSSMAG00000014165
Tongue sole	MODERN SPECIES	17	daam1b (ENSCSEG00000020438)	ppp1r13bb (ENSCSEG00000020508)	si:dkey-25e12.3 (ENSCSEG00000020525)	ENSCSEG00000020528	ENSCSEG00000020531	gata4 (ENSCSEG00000020533)	fdft1 (ENSCSEG00000020538)	ctsbb (ENSCSEG00000020545)	ABHD1 (ENSCSEG00000020549)	ENSCSEG00000020550	kcnk2b (ENSCSEG00000020551) #26	ENSCSEG00000020554	SNX9 (ENSCSEG00000020557)	ENSCSEG00000020566	rps6kc1 (ENSCSEG00000020571) #21	prox1a (ENSCSEG00000020639) #22	smyd2b (ENSCSEG00000020640)	PTPN14 (ENSCSEG00000020643) #24	ENSCSEG00000020647	EFR3B (ENSCSEG00000020649)	ENSCSEG00000020658	ENSCSEG00000020660	parp1 (ENSCSEG00000020665)	lin9 (ENSCSEG00000020680)	mixl1 (ENSCSEG00000020686)	acbd3 (ENSCSEG00000020688)	NHSL1 (ENSCSEG00000020691)	hebp2 (ENSCSEG00000020695)	cmtr1 (ENSCSEG00000020697)	ENSCSEG00000020698	ENSCSEG00000020699
Carangaria_A	ANCESTRAL SPECIES	13	ENSGT00940000153463.a.c.b	ENSGT00510000047616.a.a	ENSGT00510000047616.a.b	ENSGT00940000155141.w.a	ENSGT00940000155141.x	ENSGT00940000158349	ENSGT00390000016034	ENSGT00940000166128	ENSGT00950000182902.a.d	ENSGT00940000165510	ENSGT00940000156560.h #26	ENSGT00940000164041.b.a	ENSGT00940000156557.h	ENSGT00530000063085.A.a	ENSGT00940000155656 #21	ENSGT00940000154790.a.a.b #22	ENSGT00940000166832	ENSGT00940000156874 #24	ENSGT00390000016811.h	ENSGT00390000002143.b.a	ENSGT00940000167206	ENSGT01030000234555.a.b.f.a	ENSGT00940000156058	ENSGT00390000003188	ENSGT00940000162190	ENSGT00530000063651.a	ENSGT00950000182963.a.a	ENSGT00940000160412.a	ENSGT00940000157172	ENSGT00940000175191	ENSGT00390000017888
Seriola	ANCESTRAL SPECIES	4	ENSGT00940000153463.a.c.b	ENSGT00510000047616.a.a	ENSGT00510000047616.a.b	ENSGT00940000155141.w.a	ENSGT00940000155141.x	ENSGT00940000158349	ENSGT00390000016034	ENSGT00940000166128	ENSGT00950000182902.a.d	ENSGT00940000165510	ENSGT00940000156560.h #26	ENSGT00940000164041.b.a	ENSGT00940000156557.h	ENSGT00530000063085.A.a	ENSGT00940000155656 #21	ENSGT00940000154790.a.a.b #22	ENSGT00940000166832	ENSGT00940000156874 #24	ENSGT00390000016811.h	ENSGT00390000002143.b.a	ENSGT00940000167206	ENSGT01030000234555.a.b.f.a	ENSGT00940000156058	ENSGT00390000003188	ENSGT00940000162190	ENSGT00530000063651.a	ENSGT00950000182963.a.a	ENSGT00940000160412.a	ENSGT00940000157172	ENSGT00940000175191	ENSGT00390000017888
Greater amberjack	MODERN SPECIES	10	ppp1r13bb (ENSSDUG00000015641)	ENSSDUG00000015696	ENSSDUG00000015730	ENSSDUG00000015755	ENSSDUG00000015796	gata4 (ENSSDUG00000015806)	fdft1 (ENSSDUG00000015827)	ctsbb (ENSSDUG00000015853)	ABHD1 (ENSSDUG00000015886)	ENSSDUG00000015999	kcnk2b (ENSSDUG00000016030) #26	ENSSDUG00000016046	SNX9 (ENSSDUG00000016071)	ENSSDUG00000016180	rps6kc1 (ENSSDUG00000016207) #21	prox1a (ENSSDUG00000016285) #22	smyd2b (ENSSDUG00000016306)	PTPN14 (ENSSDUG00000016356) #24	POMC (ENSSDUG00000016440)	EFR3B (ENSSDUG00000016465)	ENSSDUG00000016588	parp1 (ENSSDUG00000016626)	ENSSDUG00000016692	lin9 (ENSSDUG00000016699)	mixl1 (ENSSDUG00000016720)	acbd3 (ENSSDUG00000016723)	NHSL1 (ENSSDUG00000016740)	hebp2 (ENSSDUG00000016817)	cmtr1 (ENSSDUG00000016830)	ENSSDUG00000016869	fbxo25 (ENSSDUG00000016883)
Yellowtail amberjack	MODERN SPECIES	2275										ENSSLDG00000006984	kcnk2b (ENSSLDG00000006952) #26	ENSSLDG00000006930	SNX9 (ENSSLDG00000006814)	ENSSLDG00000006756	rps6kc1 (ENSSLDG00000006680) #21	prox1a (ENSSLDG00000006650) #22	smyd2b (ENSSLDG00000006625)	PTPN14 (ENSSLDG00000006578) #24	ENSSLDG00000006562	EFR3B (ENSSLDG00000006520)	ENSSLDG00000006486	ENSSLDG00000006468	parp1 (ENSSLDG00000006384)	lin9 (ENSSLDG00000006318)	mixl1 (ENSSLDG00000006285)	acbd3 (ENSSLDG00000006241)	NHSL1 (ENSSLDG00000006162)	hebp2 (ENSSLDG00000006122)	cmtr1 (ENSSLDG00000006047)	ENSSLDG00000006012	ENSSLDG00000005994
Barramundi perch	MODERN SPECIES	162	ENSLCAG00010008765	si:dkey-25e12.3 (ENSLCAG00010008769)	NCOA7 (ENSLCAG00010008775)	gata4 (ENSLCAG00010008778)	ENSLCAG00010008788	fdft1 (ENSLCAG00010008793)	ctsbb (ENSLCAG00010008813)	ABHD1 (ENSLCAG00010008827)	ENSLCAG00010008833	kcnk2b (ENSLCAG00010008840) #26	ENSLCAG00010008845	SNX9 (ENSLCAG00010008944)	ENSLCAG00010009222	rps6kc1 (ENSLCAG00010009227) #21	rps6kc1 (ENSLCAG00010009230) #21	prox1a (ENSLCAG00010009233) #22	smyd2b (ENSLCAG00010009259)	ENSLCAG00010009357 #24	ENSLCAG00010009359 #24	ENSLCAG00010009362 #24	POMC (ENSLCAG00010009368)	EFR3B (ENSLCAG00010009430)	ENSLCAG00010009744	parp1 (ENSLCAG00010009960)	ENSLCAG00010010025	lin9 (ENSLCAG00010010050)	mixl1 (ENSLCAG00010010112)	acbd3 (ENSLCAG00010010116)	hebp2 (ENSLCAG00010010129)	cmtr1 (ENSLCAG00010010169)	ENSLCAG00010010425
Tiger tail seahorse	MODERN SPECIES	217																prox1a (ENSHCOG00000011374) #22	smyd2b (ENSHCOG00000011443)	PTPN14 (ENSHCOG00000011495) #24	ENSHCOG00000011509	ENSHCOG00000011520	ENSHCOG00000011558	parp1 (ENSHCOG00000011619)	lin9 (ENSHCOG00000011676)	mixl1 (ENSHCOG00000011701)	acbd3 (ENSHCOG00000011730)	NHSL1 (ENSHCOG00000011754)	hebp2 (ENSHCOG00000011772)	cmtr1 (ENSHCOG00000011866)	ENSHCOG00000011892	ENSHCOG00000011904	fbxo25 (ENSHCOG00000011916)
Pinecone sodierfish	MODERN SPECIES	16	daam1b (ENSMMDG00005023665)	ppp1r13bb (ENSMMDG00005023164)	ENSMMDG00005023126	ENSMMDG00005023124	NCOA7 (ENSMMDG00005023120)	ENSMMDG00005023117	ctsbb (ENSMMDG00005023115)	gata4 (ENSMMDG00005023111)	fdft1 (ENSMMDG00005023104)	ABHD1 (ENSMMDG00005022961)	kcnk2b (ENSMMDG00005022955) #26	ENSMMDG00005022952	SNX9 (ENSMMDG00005022117)	ENSMMDG00005022061	rps6kc1 (ENSMMDG00005022048) #21	prox1a (ENSMMDG00005022034) #22	ENSMMDG00005021949	PTPN14 (ENSMMDG00005021926) #24	ENSMMDG00005021916	EFR3B (ENSMMDG00005021097)	ENSMMDG00005021056	ENSMMDG00005021054	ENSMMDG00005021053	parp1 (ENSMMDG00005020925)	lin9 (ENSMMDG00005020869)	mixl1 (ENSMMDG00005020865)	acbd3 (ENSMMDG00005020863)	NHSL1 (ENSMMDG00005020857)	hebp2 (ENSMMDG00005020840)	cmtr1 (ENSMMDG00005020529)	ENSMMDG00005020511
Otomorpha	DUPLICATION
Otomorpha	ANCESTRAL SPECIES	166	ENSGT01030000234626.B	ENSGT00940000162166	ENSGT00940000160412.a	ENSGT00950000182963.a.a	ENSGT00530000063651.a	ENSGT00940000162190	ENSGT00390000003188	ENSGT00940000156058	ENSGT00940000167206	ENSGT01030000234555.a.b.f.a	ENSGT00390000016811.h	ENSGT00940000164041.b.a	ENSGT00940000156557.h	ENSGT00530000063085.A.a	ENSGT00940000155656 #21	ENSGT00940000154790.a.a.b.g #22	ENSGT00940000164041.a	ENSGT00940000156557.g	ENSGT00940000154790.a.a.b.h #22	ENSGT00940000157082 #23	ENSGT00940000156874 #24	ENSGT00940000156560.h #26	ENSGT00940000165510	ENSGT00950000182902.a.d	ENSGT00940000165866	ENSGT00940000166128	ENSGT00390000016034	ENSGT00940000158349	ENSGT00940000175851	ENSGT00940000155141.w.a	ENSGT00510000047616.a.b
Otophysi	ANCESTRAL SPECIES	423															ENSGT00940000155656 #21	ENSGT00940000154790.a.a.b.g #22	ENSGT00940000156874 #24	ENSGT00940000156560.h #26	ENSGT00940000165510	ENSGT00950000182902.a.d
Characiphysae	ANCESTRAL SPECIES	102	ENSGT00940000155107.a.b	ENSGT00950000183074.B.a.a	ENSGT00940000163960.b	ENSGT00520000055570.B.k	ENSGT00390000017022	ENSGT00940000154071.B	ENSGT00390000015936	ENSGT00390000003585	ENSGT00940000153370.a.b	ENSGT00390000002675	ENSGT00940000158461	ENSGT00600000085656	ENSGT00950000183186.A	ENSGT00390000018361	ENSGT00940000155656 #21	ENSGT00940000154790.a.a.b.g #22	ENSGT00940000156874 #24	ENSGT00940000156560.h #26	ENSGT00940000165510	ENSGT00950000182902.a.d
Characiphysae_b	ANCESTRAL SPECIES	214			ENSGT00940000163960.b	ENSGT00520000055570.B.k	ENSGT00390000017022	ENSGT00940000154071.B	ENSGT00390000015936	ENSGT00390000003585	ENSGT00940000153370.a.b	ENSGT00390000002675	ENSGT00940000158461	ENSGT00600000085656	ENSGT00950000183186.A	ENSGT00390000018361	ENSGT00940000155656 #21	ENSGT00940000154790.a.a.b.g #22
Characoidei	ANCESTRAL SPECIES	280			ENSGT00940000163960.b	ENSGT00520000055570.B.k	ENSGT00390000017022	ENSGT00940000154071.B	ENSGT00390000015936	ENSGT00390000003585	ENSGT00940000153370.a.b	ENSGT00390000002675	ENSGT00940000158461	ENSGT00600000085656	ENSGT00950000183186.A	ENSGT00390000018361	ENSGT00940000155656 #21	ENSGT00940000154790.a.a.b.g #22
Red-bellied piranha	MODERN SPECIES	388				GNPAT (ENSPNAG00000023426)	zgc:194224 (ENSPNAG00000023442)	TRIM67 (ENSPNAG00000023454)	exoc8 (ENSPNAG00000023463)	sprtn (ENSPNAG00000023533)	FAM89A (ENSPNAG00000023542)	arv1 (ENSPNAG00000023573)	ttc13 (ENSPNAG00000023890)	ENSPNAG00000023922	CLEC11A (ENSPNAG00000023949)	si:ch73-111k22.2 (ENSPNAG00000023980)	rps6kc1 (ENSPNAG00000024088) #21	ENSPNAG00000024119 #22	SMYD2 (ENSPNAG00000024205) #23
Mexicana tetra	MODERN SPECIES	18	il20ra (ENSAMXG00000002024)	ENSAMXG00000042576	ENSAMXG00000043679	GNPAT (ENSAMXG00000012405)	zgc:194224 (ENSAMXG00000012397)	TRIM67 (ENSAMXG00000012369)	exoc8 (ENSAMXG00000025641)	sprtn (ENSAMXG00000040282)	FAM89A (ENSAMXG00000034198)	arv1 (ENSAMXG00000038378)	ttc13 (ENSAMXG00000012290)	ENSAMXG00000033111	ENSAMXG00000032481	si:ch73-111k22.2 (ENSAMXG00000035007)	rps6kc1 (ENSAMXG00000012243) #21	ENSAMXG00000012231 #22	ENSAMXG00000001061	ENSAMXG00000001051	zgc:112332 (ENSAMXG00000001048)	tpk1 (ENSAMXG00000042237)	sec61g (ENSAMXG00000040156)	ENSAMXG00000032925	CNTNAP2 (ENSAMXG00000021544)	cul1b (ENSAMXG00000021535)	ezh2 (ENSAMXG00000021485)	pdia4 (ENSAMXG00000021465)	bmi1a (ENSAMXG00000034022)	commd3 (ENSAMXG00000043451)	MLLT10 (ENSAMXG00000021190)	SKIDA1 (ENSAMXG00000024968)	pip4k2aa (ENSAMXG00000020931)
Channel catfish	MODERN SPECIES	11	ENSIPUG00000011586	ENSIPUG00000011557	ENSIPUG00000011531	ENSIPUG00000011329	gnpat (ENSIPUG00000011225)	c2h1orf131 (ENSIPUG00000011214)	trim67 (ENSIPUG00000011203)	exoc8 (ENSIPUG00000011188)	sprtn (ENSIPUG00000011175)	fam89a (ENSIPUG00000011156)	arv1 (ENSIPUG00000011137)	ttc13 (ENSIPUG00000011124)	ENSIPUG00000011112	c2h1orf198 (ENSIPUG00000011103)	rps6kc1 (ENSIPUG00000011081) #21	ENSIPUG00000011063 #22	SMYD2 (ENSIPUG00000011020) #23	ptpn14 (ENSIPUG00000010953) #24	kcnk2b (ENSIPUG00000010928) #26	ENSIPUG00000010889	ABHD1 (ENSIPUG00000010873)	ENSIPUG00000010837	CTGF (ENSIPUG00000010786)	moxd1 (ENSIPUG00000010767)	epha7 (ENSIPUG00000010717)	ENSIPUG00000010441	BACH2 (ENSIPUG00000010404)	gja10 (ENSIPUG00000010380)	Casp8ap2 (ENSIPUG00000010358)	MDN1 (ENSIPUG00000010169)	ginm1 (ENSIPUG00000010123)
Cyprinoidei	ANCESTRAL SPECIES																	ENSGT00940000154790.a.a.b.g #22
Cyprininae	DUPLICATION
Cyprininae	ANCESTRAL SPECIES	259	ENSGT00940000165360	ENSGT00940000155887.b.a	ENSGT00940000156652.i	ENSGT00940000158591.g.a.e	ENSGT00940000156953.d	ENSGT01060000248564.a.a.a.a.h.a.a	ENSGT00950000182856.a.b.b.c	ENSGT00530000063775.a.a.d	ENSGT00390000013856	ENSGT00530000063503.a.b.g.a.b	ENSGT00940000156078.d.b	ENSGT00940000155724.r.c	ENSGT00940000166379.d	ENSGT00940000165510	ENSGT00940000156560.h #26	ENSGT00940000154790.a.a.b.g.a #22	ENSGT00940000158991	ENSGT00940000156987.c	ENSGT00940000155676.g	ENSGT00940000154317.a.b.b.b	ENSGT00390000006522.b.j	ENSGT00390000002112.a	ENSGT00950000183001.a.b.a.a	ENSGT00390000001627	ENSGT00940000155462.`b.b.a	ENSGT00940000164843.b.g.b	ENSGT00940000155462.`b.b.b	ENSGT00940000164843.b.g.a	ENSGT00940000160119	ENSGT00940000155723	ENSGT00940000165424.a.a.a.a
Cyprininae_a	ANCESTRAL SPECIES	345	ENSGT00940000157684.a	ENSGT00940000155887.b.a	ENSGT00940000156652.i	ENSGT00940000158591.g.a.e	ENSGT00940000156953.d	ENSGT01060000248564.a.a.a.a.h.a.a	ENSGT00950000182856.a.b.b.c	ENSGT00530000063775.a.a.d	ENSGT00390000013856	ENSGT00530000063503.a.b.g.a.b	ENSGT00940000156078.d.b	ENSGT00940000155724.r.c	ENSGT00940000166379.d	ENSGT00940000165510	ENSGT00940000156560.h.a #26	ENSGT00940000154790.a.a.b.g.a #22	ENSGT00940000158991	ENSGT00940000156987.c	ENSGT00940000155676.g	ENSGT00940000154317.a.b.b.b	ENSGT00940000155676.h	ENSGT00390000006522.b.j	ENSGT00390000002112.a	ENSGT00950000183001.a.b.a.a	ENSGT00390000001627.o	ENSGT00940000155462.`b.b.a	ENSGT00940000164843.b.g.b
Common carp reference	MODERN SPECIES	34	GABRR2 (ENSCCRG00000073993)	gabrr1 (ENSCCRG00000062871)	rngtt (ENSCCRG00000018127)	cnr1 (ENSCCRG00000081020)	snx14 (ENSCCRG00000009292)	nt5e (ENSCCRG00000022848)	ENSCCRG00000033059	myo6a (ENSCCRG00000022500)	SENP6 (ENSCCRG00000065270)	nrl (ENSCCRG00000002835)	ENSCCRG00000054712	kcnk2b (ENSCCRG00000057872) #26	ENSCCRG00000053911	ENSCCRG00000080108	ENSCCRG00000056967	ENSCCRG00000059646 #22	ENSCCRG00000070369	ENSCCRG00000040581	COL10A1 (ENSCCRG00000074688)	ENSCCRG00000073500	ENSCCRG00000027697	ufl1 (ENSCCRG00000079835)	GPR63 (ENSCCRG00000015550)	NDUFAF4 (ENSCCRG00000015546)	fynb (ENSCCRG00000015327)	ENSCCRG00000015289	ccn6 (ENSCCRG00000003023)	tube1 (ENSCCRG00000037750)	lama4 (ENSCCRG00000033581)	marcksa (ENSCCRG00000035694)	cebpz (ENSCCRG00000050486)
Golden-line barbel	MODERN SPECIES	2361																ENSSGRG00000008544 #22
Goldfish	MODERN SPECIES	12	ENSCARG00000004240	ENSCARG00000004236	ube2j1 (ENSCARG00000004210)	GABRR2 (ENSCARG00000004128)	gabrr1 (ENSCARG00000004032)	ENSCARG00000003998	rngtt (ENSCARG00000003928)	cnr1 (ENSCARG00000003897)	snx14 (ENSCARG00000003771)	nt5e (ENSCARG00000003735)	ENSCARG00000003728	myo6a (ENSCARG00000003683)	SENP6 (ENSCARG00000040225)	nrl (ENSCARG00000040209)	kcnk2b (ENSCARG00000040189) #26	ENSCARG00000040180 #22	HS3ST5 (ENSCARG00000040172)	FRK (ENSCARG00000040135)	COL10A1 (ENSCARG00000040127)	nt5dc1 (ENSCARG00000039529)	dse (ENSCARG00000039511)	ufl1 (ENSCARG00000037382)	GPR63 (ENSCARG00000037322)	NDUFAF4 (ENSCARG00000037313)	fynb (ENSCARG00000036984)	si:dkey-119m7.4 (ENSCARG00000036956)	ccn6 (ENSCARG00000036922)	tube1 (ENSCARG00000036807)	lama4 (ENSCARG00000027968)	marcksa (ENSCARG00000027739)	cebpz (ENSCARG00000027674)
Cyprininae	ANCESTRAL SPECIES																	ENSGT00940000154790.a.a.b.g.b #22
Cyprininae_a	ANCESTRAL SPECIES																	ENSGT00940000154790.a.a.b.g.b #22
Golden-line barbel	MODERN SPECIES	368														tshr (ENSSGRG00000045795)	PUM2 (ENSSGRG00000043331)	ENSSGRG00000043289 #22	ENSSGRG00000043288	foxi1 (ENSSGRG00000043287)	ENSSGRG00000043286	zgc:112964 (ENSSGRG00000043285)	ENSSGRG00000043284	INSYN2A (ENSSGRG00000043279)	dock1 (ENSSGRG00000043216)	ADAM12 (ENSSGRG00000043138)	dhx32a (ENSSGRG00000043137)	bccip (ENSSGRG00000043081)	wbp2 (ENSSGRG00000043079)	ENSSGRG00000043078	FDXR (ENSSGRG00000043075)
Clupeiformes	ANCESTRAL SPECIES	6	ENSGT00990000204360	ENSGT01030000234906	ENSGT00500000044870.a	ENSGT00940000158839	ENSGT00940000160412.a	ENSGT00530000063651.a	ENSGT00940000162190	ENSGT00390000003188	ENSGT00940000156058	ENSGT01030000234555.a.b.f.a	ENSGT00940000167206	ENSGT00390000016811.h	ENSGT00940000164041.b.a	ENSGT00940000156557.h	ENSGT00940000155656 #21	ENSGT00940000154790.a.a.b.g #22	ENSGT00940000156874 #24	ENSGT00940000156560.h #26	ENSGT00940000165510.b	ENSGT00950000182902.a.d	ENSGT00940000166128	ENSGT00390000016034	ENSGT00940000158349	ENSGT00940000155141.w.a	ENSGT00510000047616.a.b
Denticle herring	MODERN SPECIES	5	NHSL1 (ENSDCDG00000034352)	acbd3 (ENSDCDG00000034347)	mixl1 (ENSDCDG00000034346)	lin9 (ENSDCDG00000034335)	ENSDCDG00000034326	parp1 (ENSDCDG00000034290)	ENSDCDG00000034277	ENSDCDG00000034276	ENSDCDG00000034266	ENSDCDG00000034259	EFR3B (ENSDCDG00000033886)	pomcb (ENSDCDG00000033865)	ENSDCDG00000033864	SNX9 (ENSDCDG00000033822)	rps6kc1 (ENSDCDG00000033812) #21	ENSDCDG00000033806 #22	ENSDCDG00000033804	SMYD2 (ENSDCDG00000033789) #23	PTPN14 (ENSDCDG00000033759) #24	kcnk2b (ENSDCDG00000033752) #26	ENSDCDG00000033750	ENSDCDG00000033749	ctsbb (ENSDCDG00000033743)	fdft1 (ENSDCDG00000033739)	gata4 (ENSDCDG00000033736)	ENSDCDG00000033734	ENSDCDG00000033730	ENSDCDG00000033727	ENSDCDG00000033723	STX11 (ENSDCDG00000033720)	STX11 (ENSDCDG00000033716)
Otomorpha	ANCESTRAL SPECIES	166	ENSGT00950000182963.a.a	ENSGT00530000063651.a	ENSGT00940000162190	ENSGT00390000003188	ENSGT00940000156058	ENSGT00940000167206	ENSGT01030000234555.a.b.f.a	ENSGT00390000016811.h	ENSGT00940000164041.b.a	ENSGT00940000156557.h	ENSGT00530000063085.A.a	ENSGT00940000155656 #21	ENSGT00940000154790.a.a.b.g #22	ENSGT00940000164041.a	ENSGT00940000156557.g	ENSGT00940000154790.a.a.b.h #22	ENSGT00940000157082 #23	ENSGT00940000156874 #24	ENSGT00940000156560.h #26	ENSGT00940000165510	ENSGT00950000182902.a.d	ENSGT00940000165866	ENSGT00940000166128	ENSGT00390000016034	ENSGT00940000158349	ENSGT00940000175851	ENSGT00940000155141.w.a	ENSGT00510000047616.a.b	ENSGT01050000244948.c.b.a.a.a	ENSGT00940000157477	ENSGT00730000111244.a.b
Clupeiformes	ANCESTRAL SPECIES	330								ENSGT01030000234555.a.b.f.b	ENSGT00950000183114.a.a	ENSGT00940000166718	ENSGT00940000157133	ENSGT00390000002143.b.a	ENSGT00390000016811.g	ENSGT00940000164041.a	ENSGT00940000156557.g	ENSGT00940000154790.a.a.b.h #22	ENSGT00940000157082 #23	ENSGT00730000111187.a.b ##25	ENSGT00940000156560.g #26	ENSGT00940000166224	ENSGT00940000158680	ENSGT01070000253766.A.a.a.b.a.a	ENSGT00390000000455.b
Denticle herring	MODERN SPECIES		ENSDCDG00000021885	ENSDCDG00000021882	ENSDCDG00000021878	KLHL28 (ENSDCDG00000021876)	C14orf28 (ENSDCDG00000021875)	mthfd1b (ENSDCDG00000021011)	zgc:162964 (ENSDCDG00000020980)	ENSDCDG00000020977	XDH (ENSDCDG00000001922)	ENSDCDG00000001407	dnajc27 (ENSDCDG00000001390)	EFR3B (ENSDCDG00000001346)	pomca (ENSDCDG00000001333)	ENSDCDG00000001329	snx9a (ENSDCDG00000001172)	prox1a (ENSDCDG00000001164) #22	SH3YL1 (ENSDCDG00000001161)	alkal2b (ENSDCDG00000001158)	ENSDCDG00000001154	ENSDCDG00000001142	ldah (ENSDCDG00000001132)	GDF7 (ENSDCDG00000001128)	ENSDCDG00000001125	XKR5 (ENSDCDG00000001122)	ctsba (ENSDCDG00000001119)	KCNK2 (ENSDCDG00000001113) #26	ENSDCDG00000001107	ENSDCDG00000001103	gcfc2 (ENSDCDG00000001089)	eva1a (ENSDCDG00000001085)	XKR5 (ENSDCDG00000001083)
Atlantic herring	MODERN SPECIES	5	ccdc28a (ENSCHAG00000020778)	ECT2L (ENSCHAG00000020628)	ENSCHAG00000020621	ENSCHAG00000020618	zgc:162964 (ENSCHAG00000020612)	LIN9 (ENSCHAG00000020338)	ENSCHAG00000020307	XDH (ENSCHAG00000006100)	ENSCHAG00000003752	dnajc27 (ENSCHAG00000003658)	EFR3B (ENSCHAG00000002516)	pomca (ENSCHAG00000002368)	pomca (ENSCHAG00000002347)	ENSCHAG00000023593	snx9a (ENSCHAG00000023578)	prox1a (ENSCHAG00000023560) #22	smyd2a (ENSCHAG00000023508) #23	CENPF (ENSCHAG00000023466) ##25	KCNK2 (ENSCHAG00000023446) #26	eva1a (ENSCHAG00000023442)	ENSCHAG00000023333	ldah (ENSCHAG00000023320)	APOB (ENSCHAG00000023273)	ENSCHAG00000023264	alkal2b (ENSCHAG00000023252)	SH3YL1 (ENSCHAG00000023242)	ENSCHAG00000023233	NHSL1 (ENSCHAG00000023180)	ENSCHAG00000023170	slc8a3 (ENSCHAG00000023168)	MAP3K9 (ENSCHAG00000023050)
Otophysi	ANCESTRAL SPECIES	80	ENSGT00940000158839	ENSGT00390000013931	ENSGT01030000234626.B	ENSGT00940000162166	ENSGT00940000160412.a	ENSGT00950000182963.a.a	ENSGT00530000063651.a	ENSGT01030000234667.b.f.a	ENSGT00950000183114.a.a	ENSGT00940000166718	ENSGT00940000157133	ENSGT00390000002143.b.a	ENSGT00390000016811.g	ENSGT00940000164041.a	ENSGT00940000156557.g	ENSGT00940000154790.a.a.b.h #22	ENSGT00940000157082 #23	ENSGT00730000111187.a.b ##25	ENSGT00940000156560.g #26	ENSGT00940000166224	ENSGT00940000158680	ENSGT01070000253766.A.a.a.b.a.a	ENSGT00940000154096.b.b.a	ENSGT00390000000455.b	ENSGT01090000260040.b.b.b.a.m.a.a	ENSGT00940000157612	ENSGT00940000155982.e.a	ENSGT00940000157227.h	ENSGT00940000160878.e	ENSGT00940000155495.C.a.b	ENSGT00940000153123.C
Characiphysae	ANCESTRAL SPECIES	4	ENSGT00390000003866.a.b.a	ENSGT00410000026259	ENSGT00940000158622	ENSGT00950000182843.a.a.a.a	ENSGT00500000044870.a	ENSGT00940000158839	ENSGT00940000154607.a	ENSGT00950000182963.a.a	ENSGT00530000063651.a	ENSGT00950000183114.a.a	ENSGT00940000166718	ENSGT00940000157133	ENSGT00390000016811.g	ENSGT00940000164041.a	ENSGT00940000156557.g	ENSGT00940000154790.a.a.b.h #22	ENSGT00940000157082 #23	ENSGT00940000158680
Characiphysae_b	ANCESTRAL SPECIES	20	ENSGT00410000026259	ENSGT00940000158622	ENSGT00950000182843.a.a.a.a	ENSGT00500000044870.a	ENSGT00940000158839	ENSGT00940000154607.a	ENSGT00950000182963.a.a	ENSGT00530000063651.a	ENSGT00950000183114.a.a	ENSGT00940000166718	ENSGT00940000157133	ENSGT00390000002143.b.a	ENSGT00390000016811.g	ENSGT00940000164041.a	ENSGT00940000156557.g	ENSGT00940000154790.a.a.b.h #22	ENSGT00940000157082 #23	ENSGT00940000158680
Characoidei	ANCESTRAL SPECIES	208	ENSGT00390000003866.a.b.a	ENSGT00410000026259	ENSGT00940000158622	ENSGT00950000182843.a.a.a.a	ENSGT00500000044870.a	ENSGT00940000158839	ENSGT00950000182963.a.a	ENSGT00530000063651.a	ENSGT00950000183114.a.a	ENSGT00940000166718	ENSGT00940000157133	ENSGT00390000002143.b.a	ENSGT00390000016811.g	ENSGT00940000164041.a	ENSGT00940000156557.g	ENSGT00940000154790.a.a.b.h #22	ENSGT00940000157082 #23	ENSGT00940000158680
Red-bellied piranha	MODERN SPECIES	145	pth2 (ENSPNAG00000004018)	RIN3 (ENSPNAG00000026162)	snap23.1 (ENSPNAG00000006548)	ccdc28a (ENSPNAG00000026052)	ECT2L (ENSPNAG00000026027)	zgc:162964 (ENSPNAG00000026002)	LIN9 (ENSPNAG00000025955)	ENSPNAG00000025927	XDH (ENSPNAG00000025902)	ENSPNAG00000005596	dnajc27 (ENSPNAG00000025619)	EFR3B (ENSPNAG00000005499)	pomca (ENSPNAG00000025530)	ENSPNAG00000025527	snx9a (ENSPNAG00000025507)	prox1a (ENSPNAG00000025475) #22	smyd2a (ENSPNAG00000003923) #23	ctsba (ENSPNAG00000005563)	gnrh3 (ENSPNAG00000025366)	ENSPNAG00000025303	smndc1 (ENSPNAG00000025285)	add3b (ENSPNAG00000003897)	ENSPNAG00000003892	ENSPNAG00000024578	samd8 (ENSPNAG00000024525)	npy4r (ENSPNAG00000024487)	ENSPNAG00000024473	TMEM26 (ENSPNAG00000004719)	cdk1 (ENSPNAG00000024435)	ANK3 (ENSPNAG00000024361)	tmem30b (ENSPNAG00000023576)
Mexicana tetra	MODERN SPECIES	24	dnajc27 (ENSAMXG00000041488)	ENSAMXG00000011826	XDH (ENSAMXG00000011782)	zgc:162964 (ENSAMXG00000011772)	ENSAMXG00000011766	ccdc28a (ENSAMXG00000030205)	snap23.1 (ENSAMXG00000039971)	RIN3 (ENSAMXG00000011757)	pth2 (ENSAMXG00000011755)	TMEM121 (ENSAMXG00000025420)	ENSAMXG00000011754	dnal1 (ENSAMXG00000032331)	fut8a (ENSAMXG00000011744)	gphna (ENSAMXG00000011740)	pals1a (ENSAMXG00000011726)	prox1a (ENSAMXG00000011717) #22	smyd2a (ENSAMXG00000038767) #23	ctsba (ENSAMXG00000011699)	ENSAMXG00000033807	ENSAMXG00000011676	vax1 (ENSAMXG00000036022)	ENSAMXG00000035820	atp6v1ba (ENSAMXG00000011653)	shtn1 (ENSAMXG00000011638)	eno4 (ENSAMXG00000011630)	hspa12a (ENSAMXG00000011627)	abhd12 (ENSAMXG00000043906)	ENSAMXG00000029062	b3gnt2b (ENSAMXG00000025419)	ENSAMXG00000037682	ENSAMXG00000029465
Electric eel	MODERN SPECIES	354				RIN3 (ENSEEEG00000023214)	snap23.1 (ENSEEEG00000023209)	ccdc28a (ENSEEEG00000023207)	ENSEEEG00000023206	zgc:162964 (ENSEEEG00000023205)	zgc:162964 (ENSEEEG00000023204)	ENSEEEG00000023203	XDH (ENSEEEG00000019961)	dnajc27 (ENSEEEG00000019806)	EFR3B (ENSEEEG00000019804)	pomca (ENSEEEG00000019801)	snx9a (ENSEEEG00000019577)	prox1a (ENSEEEG00000019567) #22	smyd2a (ENSEEEG00000019490) #23	ctsba (ENSEEEG00000019435)	mrpl57 (ENSEEEG00000019432)	TTC7B (ENSEEEG00000019431)
Channel catfish	MODERN SPECIES	28	snap25b (ENSIPUG00000015696)	cdk1 (ENSIPUG00000015647)	dnal1 (ENSIPUG00000015580)	c9h14orf80 (ENSIPUG00000015561)	TMEM121 (ENSIPUG00000015552)	pth2 (ENSIPUG00000015545)	RIN3 (ENSIPUG00000015511)	snap23.1 (ENSIPUG00000015488)	ccdc28a (ENSIPUG00000015478)	ENSIPUG00000015398	zgc:162964 (ENSIPUG00000015380)	ENSIPUG00000015365	xdh (ENSIPUG00000015176)	dnajc27 (ENSIPUG00000015086)	pomca (ENSIPUG00000015065)	prox1 (ENSIPUG00000015051) #22	smyd2a (ENSIPUG00000014969) #23	ctsba (ENSIPUG00000014860)	DLK1 (ENSIPUG00000014836)	begain (ENSIPUG00000014802)	wdr25 (ENSIPUG00000014762)	wars (ENSIPUG00000014705)	slc25a47 (ENSIPUG00000014698)	slc25a29 (ENSIPUG00000014684)	soul3 (ENSIPUG00000014665)	fancm (ENSIPUG00000014629)	ENSIPUG00000014601	ENSIPUG00000014569	c9h14orf28 (ENSIPUG00000014548)	klhl28 (ENSIPUG00000014495)	PTPRE (ENSIPUG00000014415)
Cyprinoidei	ANCESTRAL SPECIES	72	ENSGT00410000026259	ENSGT00940000158622	ENSGT00950000182843.a.a.a.a.ub	ENSGT00950000182843.a.a.a.a.tb	ENSGT00500000044870.a	ENSGT00940000158839	ENSGT00530000063651.a	ENSGT01030000234667.b.f.a	ENSGT00950000183114.a.a	ENSGT00940000166718	ENSGT00940000157133	ENSGT00390000002143.b.a	ENSGT00390000016811.g	ENSGT00940000164041.a	ENSGT00940000156557.g	ENSGT00940000154790.a.a.b.h #22	ENSGT00940000157082 #23	ENSGT00730000111187.a.b.b ##25	ENSGT00940000156560.g #26	ENSGT00940000166224	ENSGT00940000158680	ENSGT01070000253766.A.a.a.b.a.a	ENSGT00390000000455.b	ENSGT01090000260040.b.b.b.a.m.a.a	ENSGT00940000157612	ENSGT00940000155982.e.a	ENSGT01060000253490	ENSGT00940000157227.h	ENSGT00940000160878.e	ENSGT00940000155495.C.a.b	ENSGT00940000153123.C
Cyprininae	DUPLICATION
Cyprininae	ANCESTRAL SPECIES	200	ENSGT00940000168283.a	ENSGT00390000003866.a.b.a.a	ENSGT00410000026259.c	ENSGT00940000158622.e	ENSGT00950000182843.a.a.a.a.ub.a.a	ENSGT00950000182843.a.a.a.a.tb.b	ENSGT00500000044870.a.i	ENSGT00940000158839	ENSGT00530000063651.a.p.b	ENSGT00950000183114.a.a.h	ENSGT00940000166718.b	ENSGT00940000157133.a	ENSGT00390000002143.b.a.g.a	ENSGT00390000016811.g.c	ENSGT00940000156557.g.b	ENSGT00940000154790.a.a.b.h.a #22	ENSGT00940000157082.o #23	ENSGT00730000111187.a.b.b.a ##25	ENSGT00940000156560.g.c #26	ENSGT00940000166224.b	ENSGT00940000158680.b	ENSGT01070000253766.A.a.a.b.a.a	ENSGT00940000154096.b.b.a.h.a.b	ENSGT00390000000455.b.g	ENSGT01090000260040.b.b.b.a.m.a.a.a	ENSGT00940000157612.h	ENSGT00940000155982.e.a.b	ENSGT01060000253490
Goldfish	MODERN SPECIES	8	TMEM121 (ENSCARG00000031678)	pth2 (ENSCARG00000031669)	RIN3 (ENSCARG00000031648)	snap23.2 (ENSCARG00000031642)	snap23.1 (ENSCARG00000031628)	ccdc28a (ENSCARG00000031622)	ECT2L (ENSCARG00000031614)	zgc:162964 (ENSCARG00000031594)	XDH (ENSCARG00000021943)	ENSCARG00000021659	ENSCARG00000021654	dnajc27 (ENSCARG00000021643)	EFR3B (ENSCARG00000021526)	pomca (ENSCARG00000021498)	snx9a (ENSCARG00000021439)	prox1a (ENSCARG00000021416) #22	smyd2a (ENSCARG00000021401) #23	CENPF (ENSCARG00000021252) ##25	KCNK2 (ENSCARG00000021240) #26	ENSCARG00000021238	ctsba (ENSCARG00000020956)	ENSCARG00000020915	eva1a (ENSCARG00000020908)	ENSCARG00000020893	cln8 (ENSCARG00000020886)	DLGAP2 (ENSCARG00000020869)	ENSCARG00000020858	zgc:193593 (ENSCARG00000020853)	gale (ENSCARG00000020788)	zbtb8a (ENSCARG00000020778)	hmgcl (ENSCARG00000020743)
Cyprininae_a	ANCESTRAL SPECIES	186	ENSGT00940000168283.a	ENSGT00390000003866.a.b.a.a	ENSGT00410000026259.c	ENSGT00940000158622.e	ENSGT00950000182843.a.a.a.a.ub.a.a	ENSGT00950000182843.a.a.a.a.tb.b	ENSGT00500000044870.a.i	ENSGT00940000158839	ENSGT00530000063651.a.p.b	ENSGT00950000183114.a.a.h	ENSGT00940000166718.b	ENSGT00940000157133.a	ENSGT00390000002143.b.a.g.a	ENSGT00390000016811.g.c	ENSGT00940000156557.g.b	ENSGT00940000154790.a.a.b.h.a #22	ENSGT00940000157082.o #23	ENSGT00730000111187.a.b.b.a ##25	ENSGT00940000156560.g.c #26	ENSGT00940000166224.b	ENSGT00940000158680.b	ENSGT01070000253766.A.a.a.b.a.a	ENSGT00940000154096.b.b.a.h.a.b	ENSGT00390000000455.b.g	ENSGT01090000260040.b.b.b.a.m.a.a.a	ENSGT00940000157612.h	ENSGT00940000155982.e.a.b	ENSGT01060000253490	ENSGT00940000155982.e.a.a	ENSGT00940000157227.h	ENSGT00940000160878.e.a
Common carp reference	MODERN SPECIES	30	ENSCCRG00000061596	pth2 (ENSCCRG00000064392)	ENSCCRG00000036557	snap23.2 (ENSCCRG00000036552)	snap23.2 (ENSCCRG00000047736)	snap23.1 (ENSCCRG00000066190)	ccdc28a (ENSCCRG00000047722)	ENSCCRG00000047720	zgc:162964 (ENSCCRG00000047711)	ENSCCRG00000029439	ENSCCRG00000013319	ENSCCRG00000067536	dnajc27 (ENSCCRG00000058575)	ENSCCRG00000015411	snx9a (ENSCCRG00000041673)	prox1a (ENSCCRG00000061297) #22	smyd2a (ENSCCRG00000033331) #23	CENPF (ENSCCRG00000039055) ##25	ENSCCRG00000024315	KCNK2 (ENSCCRG00000043815) #26	ENSCCRG00000064348	ENSCCRG00000024360	eva1a (ENSCCRG00000024363)	grhl1 (ENSCCRG00000004918)	gcfc2 (ENSCCRG00000037792)	ywhaqb (ENSCCRG00000027933)	klf11b (ENSCCRG00000006609)	ENSCCRG00000065724	DHX32 (ENSCCRG00000029108)	FANK1 (ENSCCRG00000029066)	ADAM12 (ENSCCRG00000028317)
Golden-line barbel	MODERN SPECIES	157	TMEM121 (ENSSGRG00000021963)	pth2 (ENSSGRG00000021961)	RIN3 (ENSSGRG00000021859)	snap23.2 (ENSSGRG00000021852)	snap23.1 (ENSSGRG00000021849)	ccdc28a (ENSSGRG00000021845)	ENSSGRG00000021841	zgc:162964 (ENSSGRG00000021833)	XDH (ENSSGRG00000010165)	ENSSGRG00000009944	dnajc27 (ENSSGRG00000009943)	EFR3B (ENSSGRG00000008221)	pomca (ENSSGRG00000008174)	ENSSGRG00000008172	snx9a (ENSSGRG00000008164)	prox1a (ENSSGRG00000008163) #22	smyd2a (ENSSGRG00000008035) #23	CENPF (ENSSGRG00000008011) ##25	KCNK2 (ENSSGRG00000008010) #26	ENSSGRG00000008009	ctsba (ENSSGRG00000006701)	ENSSGRG00000006647	eva1a (ENSSGRG00000006639)	gcfc2 (ENSSGRG00000006635)	ywhaqb (ENSSGRG00000006616)	grhl1 (ENSSGRG00000006530)	klf11b (ENSSGRG00000006527)	DHX32 (ENSSGRG00000006524)	FANK1 (ENSSGRG00000006523)	ADAM12 (ENSSGRG00000006480)	traf4a (ENSSGRG00000006404)
Cyprininae	ANCESTRAL SPECIES	158	ENSGT00940000168283.b	ENSGT00390000003866.a.b.a.b	ENSGT00410000026259.d	ENSGT00940000158622.f	ENSGT00950000182843.a.a.a.a.ub.a.b	ENSGT00950000182843.a.a.a.a.tb.a	ENSGT00500000044870.a.j.a.a	ENSGT00530000063651.a.p.a	ENSGT00950000183114.a.a.g	ENSGT00940000166718.a	ENSGT00940000157133.b	ENSGT00390000002143.b.a.g.b	ENSGT00390000016811.g.d	ENSGT00940000164041.a	ENSGT00940000156557.g.a	ENSGT00940000154790.a.a.b.h.b #22	ENSGT00940000157082.p #23	ENSGT00730000111187.a.b.b.b ##25	ENSGT00940000156560.g.d #26	ENSGT00940000166224.a	ENSGT00940000158680.a	ENSGT00940000154096.b.b.a.h.a.a	ENSGT00390000000455.b.h	ENSGT01090000260040.b.b.b.a.m.a.a.b	ENSGT00940000157612.g	ENSGT00940000155982.e.a.a	ENSGT00940000157227.h	ENSGT00940000160878.e.a	ENSGT00940000155495.C.a.b.i	ENSGT00940000153123.C.d	ENSGT00940000160878.e.b
Goldfish	MODERN SPECIES	36	DNAL1 (ENSCARG00000067868)	ENSCARG00000067857	TMEM121 (ENSCARG00000067855)	pth2 (ENSCARG00000067850)	RIN3 (ENSCARG00000067819)	snap23.1 (ENSCARG00000067794)	ccdc28a (ENSCARG00000067784)	zgc:162964 (ENSCARG00000067770)	XDH (ENSCARG00000026293)	ENSCARG00000025049	eif2s1a (ENSCARG00000025029)	EFR3B (ENSCARG00000024897)	pomca (ENSCARG00000024875)	ENSCARG00000024866	snx9a (ENSCARG00000024699)	prox1a (ENSCARG00000024670) #22	smyd2a (ENSCARG00000024597) #23	KCNK2 (ENSCARG00000024588) #26	ENSCARG00000024579	ctsba (ENSCARG00000024534)	eva1a (ENSCARG00000024515)	ywhaqb (ENSCARG00000024494)	grhl1 (ENSCARG00000024405)	klf11b (ENSCARG00000024374)	ENSCARG00000024363	ADAM12 (ENSCARG00000022871)	ENSCARG00000022818	INSYN2A (ENSCARG00000022815)	abraxas2 (ENSCARG00000022807)	ARHGAP5 (ENSCARG00000022795)	nubpl (ENSCARG00000022718)
Cyprininae_a	ANCESTRAL SPECIES	160	ENSGT00940000168283.b	ENSGT00390000003866.a.b.a.b	ENSGT00410000026259.d	ENSGT00940000158622.f	ENSGT00950000182843.a.a.a.a.ub.a.b	ENSGT00950000182843.a.a.a.a.tb.a	ENSGT00500000044870.a.j.a.a	ENSGT00530000063651.a.p.a	ENSGT00950000183114.a.a.g	ENSGT00940000166718.a	ENSGT00940000157133.b	ENSGT00390000002143.b.a.g.b	ENSGT00390000016811.g.d	ENSGT00940000164041.a	ENSGT00940000156557.g.a	ENSGT00940000154790.a.a.b.h.b #22	ENSGT00940000157082.p #23	ENSGT00730000111187.a.b.b.b ##25	ENSGT00940000156560.g.d #26	ENSGT00940000166224.a	ENSGT00940000158680.a	ENSGT00940000154096.b.b.a.h.a.a	ENSGT00390000000455.b.h	ENSGT01090000260040.b.b.b.a.m.a.a.b	ENSGT00940000157612.g	ENSGT00940000160878.e.b	ENSGT00940000155495.C.a.b.j	ENSGT00940000153123.C.c	ENSGT00530000063787.B.d.b.f	ENSGT00390000013399.r	ENSGT00530000063424.a.m
Common carp reference	MODERN SPECIES	4	ENSCCRG00000078141	pth2 (ENSCCRG00000034617)	ENSCCRG00000034624	snap23.2 (ENSCCRG00000066564)	snap23.1 (ENSCCRG00000047726)	ccdc28a (ENSCCRG00000046167)	zgc:162964 (ENSCCRG00000046158)	ENSCCRG00000045851	ENSCCRG00000008596	dnajc27 (ENSCCRG00000008603)	ENSCCRG00000022454	pomca (ENSCCRG00000008745)	ENSCCRG00000057267	ENSCCRG00000008753	snx9a (ENSCCRG00000008760)	prox1a (ENSCCRG00000061921) #22	smyd2a (ENSCCRG00000026022) #23	CENPF (ENSCCRG00000027044) ##25	KCNK2 (ENSCCRG00000027064) #26	ENSCCRG00000024298	ctsba (ENSCCRG00000027069)	eva1a (ENSCCRG00000027099)	gcfc2 (ENSCCRG00000031037)	grhl1 (ENSCCRG00000052831)	klf11b (ENSCCRG00000029179)	DHX32 (ENSCCRG00000020766)	ENSCCRG00000020768	ADAM12 (ENSCCRG00000020796)	ENSCCRG00000021291	INSYN2A (ENSCCRG00000034423)	ENSCCRG00000075160
Golden-line barbel	MODERN SPECIES	190	dnal1 (ENSSGRG00000042302)	ENSSGRG00000042331	TMEM121 (ENSSGRG00000042332)	RIN3 (ENSSGRG00000042334)	snap23.2 (ENSSGRG00000042367)	snap23.1 (ENSSGRG00000042368)	ccdc28a (ENSSGRG00000042369)	ENSSGRG00000042370	zgc:162964 (ENSSGRG00000042371)	XDH (ENSSGRG00000042373)	ENSSGRG00000042379	dnajc27 (ENSSGRG00000042406)	EFR3B (ENSSGRG00000042418)	pomca (ENSSGRG00000042419)	snx9a (ENSSGRG00000042431)	prox1a (ENSSGRG00000043063) #22	smyd2a (ENSSGRG00000043065) #23	ENSSGRG00000043085 ##25	ENSSGRG00000043086 ##25	KCNK2 (ENSSGRG00000043090) #26	ENSSGRG00000043092	ENSSGRG00000043095	eva1a (ENSSGRG00000043096)	gcfc2 (ENSSGRG00000043099)	ywhaqb (ENSSGRG00000043103)	grhl1 (ENSSGRG00000043113)	klf11b (ENSSGRG00000043202)	DHX32 (ENSSGRG00000043205)	FANK1 (ENSSGRG00000043208)	ADAM12 (ENSSGRG00000043213)	INSYN2A (ENSSGRG00000043214)
Zebrafish	MODERN SPECIES	8	ENSDARG00000091366	TMEM121 (ENSDARG00000061562)	pth2 (ENSDARG00000022951)	ENSDARG00000077618	snap23.2 (ENSDARG00000055252)	snap23.1 (ENSDARG00000012874)	ccdc28a (ENSDARG00000022983)	ECT2L (ENSDARG00000091471)	zgc:162964 (ENSDARG00000024602)	XDH (ENSDARG00000055240)	ENSDARG00000043141	dnajc27 (ENSDARG00000070916)	EFR3B (ENSDARG00000033516)	pomca (ENSDARG00000043135)	snx9a (ENSDARG00000000837)	prox1a (ENSDARG00000055158) #22	smyd2a (ENSDARG00000055151) #23	CENPF (ENSDARG00000055133) ##25	KCNK2 (ENSDARG00000055123) #26	ENSDARG00000075444	ctsba (ENSDARG00000055120)	ENSDARG00000097530	eva1a (ENSDARG00000061405)	gcfc2 (ENSDARG00000079020)	grhl1 (ENSDARG00000061391)	ywhaqb (ENSDARG00000023323)	klf11b (ENSDARG00000013794)	ENSDARG00000097372	DHX32 (ENSDARG00000079029)	ADAM12 (ENSDARG00000079068)	INSYN2A (ENSDARG00000107576)
Elephant shark	MODERN SPECIES	1619	RD3 (ENSCMIG00000011449)	slc30a1a (ENSCMIG00000011452)	nek2 (ENSCMIG00000011460)	ints7 (ENSCMIG00000011505) #7	ENSCMIG00000011653 #8	PPP2R5A (ENSCMIG00000011705) #9	pacc1 (ENSCMIG00000011833) #10	nenf (ENSCMIG00000011860) #11	atf3 (ENSCMIG00000011864) #12	ENSCMIG00000011867 #14	TATDN3 (ENSCMIG00000011882) #15	flvcr1 (ENSCMIG00000011919) #17	VASH2 (ENSCMIG00000011924) #18	angel2 (ENSCMIG00000011929) #19	RPS6KC1 (ENSCMIG00000011943) #21	prox1a (ENSCMIG00000012020) #22	smyd2a (ENSCMIG00000012031) #23	PTPN14 (ENSCMIG00000012058) #24	ENSCMIG00000012075 ##25	ENSCMIG00000012083 ##25	ENSCMIG00000012089	kcnk2b (ENSCMIG00000012121) #26	ENSCMIG00000012188	ENSCMIG00000012190	ENSCMIG00000012193
Gnathostomata	ANCESTRAL SPECIES																	ENSGT00940000154790.a.a.a ##22
Euteleostomi	ANCESTRAL SPECIES																	ENSGT00940000154790.a.a.a ##22
Sarcopterygii	ANCESTRAL SPECIES																	ENSGT00940000154790.a.a.a ##22
Tetrapoda	ANCESTRAL SPECIES																	ENSGT00940000154790.a.a.a ##22
Amniota	ANCESTRAL SPECIES																	ENSGT00940000154790.a.a.a ##22
Sauria	ANCESTRAL SPECIES																	ENSGT00940000154790.a.a.a ##22
Lepidosauria	ANCESTRAL SPECIES																	ENSGT00940000154790.a.a.a ##22
tuatara	MODERN SPECIES	522	ENSSPUG00000014265	ERG28 (ENSSPUG00000014300)	FLVCR2 (ENSSPUG00000014311) ##17	BATF (ENSSPUG00000014361)	JDP2 (ENSSPUG00000014368)	FOS (ENSSPUG00000014379)	TMED10 (ENSSPUG00000014389)	NEK9 (ENSSPUG00000014413)	ZC2HC1C (ENSSPUG00000014480)	ENSSPUG00000014488	MLH3 (ENSSPUG00000014576)	EIF2B2 (ENSSPUG00000014804)	ENSSPUG00000014813	RPS6KL1 (ENSSPUG00000014833)	DLST (ENSSPUG00000014913)	ENSSPUG00000014927 ##22	ENSSPUG00000014971	ENSSPUG00000015096	FCF1 (ENSSPUG00000015109)	AREL1 (ENSSPUG00000015123)	LTBP2 (ENSSPUG00000015468)	NPC2 (ENSSPUG00000016951)	ISCA2 (ENSSPUG00000016966)	ABCD4 (ENSSPUG00000017009)	ENSSPUG00000017032	VSX2 (ENSSPUG00000017050)	LIN52 (ENSSPUG00000017058)	ALDH6A1 (ENSSPUG00000017066)	BBOF1 (ENSSPUG00000017078)	ENTPD5 (ENSSPUG00000017101)	COQ6 (ENSSPUG00000017115)
Mammalia	ANCESTRAL SPECIES																	ENSGT00940000154790.a.a.a ##22
Theria	ANCESTRAL SPECIES																	ENSGT00940000154790.a.a.a ##22
Eutheria	ANCESTRAL SPECIES																	ENSGT00940000154790.a.a.a ##22
Boreoeutheria	ANCESTRAL SPECIES																	ENSGT00940000154790.a.a.a ##22
Euarchontoglires	ANCESTRAL SPECIES																	ENSGT00940000154790.a.a.a ##22
Euarchontoglires_A	ANCESTRAL SPECIES																	ENSGT00940000154790.a.a.a ##22
Glires	ANCESTRAL SPECIES																	ENSGT00940000154790.a.a.a ##22
Rodentia	ANCESTRAL SPECIES																	ENSGT00940000154790.a.a.a ##22
Rodentia_B	ANCESTRAL SPECIES																	ENSGT00940000154790.a.a.a ##22
Myomorpha	ANCESTRAL SPECIES																	ENSGT00940000154790.a.a.a ##22
Muroidea	ANCESTRAL SPECIES																	ENSGT00940000154790.a.a.a ##22
Muroidea_A	ANCESTRAL SPECIES																	ENSGT00940000154790.a.a.a ##22
Cricetidae	ANCESTRAL SPECIES																	ENSGT00940000154790.a.a.a ##22
Cricetidae_B	ANCESTRAL SPECIES																	ENSGT00940000154790.a.a.a ##22
Northern American deer mouse	MODERN SPECIES	2	Dtl (ENSPEMG00000009566) #8	Ppp2r5a (ENSPEMG00000007353) #9	Nenf (ENSPEMG00000004190) #11	ENSPEMG00000024914 #12	Garin4 (ENSPEMG00000027162)	ENSPEMG00000029759 #12	Batf3 (ENSPEMG00000007835) #13	Nsl1 (ENSPEMG00000001946) #14	Tatdn3 (ENSPEMG00000016778) #15	Spata45 (ENSPEMG00000015887)	Flvcr1 (ENSPEMG00000014742) #17	Vash2 (ENSPEMG00000009643) #18	Angel2 (ENSPEMG00000009630) #19	Rps6kc1 (ENSPEMG00000008234) #21	ENSPEMG00000006434	ENSPEMG00000025216 ##22	Prox1 (ENSPEMG00000005585) #22	ENSPEMG00000029028	Smyd2 (ENSPEMG00000016202) #23	Ptpn14 (ENSPEMG00000012598) #24	Cenpf (ENSPEMG00000008292) #25	ENSPEMG00000030532	Kcnk2 (ENSPEMG00000003700) #26	Kctd3 (ENSPEMG00000010370) #27	Ush2a (ENSPEMG00000011465) #28	Esrrg (ENSPEMG00000024753) #29	Gpatch2 (ENSPEMG00000018364) #30	Spata17 (ENSPEMG00000012857) #31	D1Pas1 (ENSPEMG00000010847)	Rrp15 (ENSPEMG00000009408) #32	Tgfb2 (ENSPEMG00000014434) #33
Actinopterygii	ANCESTRAL SPECIES																	ENSGT00940000154790.a.a.a ##22
Neopterygii	ANCESTRAL SPECIES																	ENSGT00940000154790.a.a.a ##22
Osteoglossocephalai	ANCESTRAL SPECIES																	ENSGT00940000154790.a.a.a ##22
Clupeocephala	ANCESTRAL SPECIES																	ENSGT00940000154790.a.a.a ##22
Euteleosteomorpha	ANCESTRAL SPECIES	285			ENSGT00940000156557.g	ENSGT00940000164041.b.b	ENSGT00390000016811.g	ENSGT00390000002143.b.b	ENSGT00940000160303.a.b	ENSGT00940000154607.a	ENSGT00510000048137	ENSGT00940000175756	ENSGT00940000157133	ENSGT00940000166718	ENSGT00950000183114.a.a	ENSGT00940000158839	ENSGT00500000044870.a	ENSGT00940000154790.a.a.a ##22
Acanthomorphata	ANCESTRAL SPECIES	85	ENSGT00940000153534.A	ENSGT00390000003758	ENSGT00940000159144.A	ENSGT00940000175375	ENSGT00940000156877	ENSGT00390000013956	ENSGT01000000214434.B.a.b	ENSGT00940000153695.B	ENSGT00390000005596.a	ENSGT00940000158272.c.a	ENSGT00940000169105	ENSGT00940000171777	ENSGT00950000182852.A.a.b.c	ENSGT00940000158839	ENSGT00500000044870.a	ENSGT00940000154790.a.a.a ##22
Euacanthomorphacea	ANCESTRAL SPECIES	36	ENSGT00930000150950.b	ENSGT00940000153534.A	ENSGT00390000003758	ENSGT00940000159144.A	ENSGT00940000175375	ENSGT00940000156877	ENSGT00390000013956	ENSGT01000000214434.B.a.b	ENSGT00940000153695.B	ENSGT00390000005596.a	ENSGT00940000158272.c.a	ENSGT00940000171777	ENSGT00950000182852.A.a.b.c	ENSGT00940000158839	ENSGT00500000044870.a	ENSGT00940000154790.a.a.a ##22	ENSGT00940000154840.b.f	ENSGT01090000260459
Percomorphaceae	ANCESTRAL SPECIES	22	ENSGT00940000153534.A	ENSGT00390000003758	ENSGT00940000159144.A	ENSGT00940000175375	ENSGT00940000156877	ENSGT00390000013956	ENSGT01000000214434.B.a.b	ENSGT00940000153695.B	ENSGT00390000005596.a	ENSGT00940000158272.c.a	ENSGT00940000169105	ENSGT00940000171777	ENSGT00950000182852.A.a.b.c	ENSGT00940000158839	ENSGT00500000044870.a	ENSGT00940000154790.a.a.a ##22	ENSGT00940000156702.a.b.b	ENSGT01040000240451.a.a.d	ENSGT00940000163418.D	ENSGT00940000177589	ENSGT00390000005935	ENSGT01090000260005.a.a.a.b.a.b.b	ENSGT00940000158471	ENSGT00940000158542.a	ENSGT00940000155890.a.b	ENSGT00940000155400.A	ENSGT00940000154453.a.b.a.a.b	ENSGT00940000157249	ENSGT00940000155408.o.b	ENSGT00940000155235.k.b	ENSGT00940000165586.b
Percomorphaceae_B	ANCESTRAL SPECIES	22	ENSGT00940000155318.b.b	ENSGT01030000234635.a.b.a.b.a	ENSGT00940000163647	ENSGT00940000159144.A.f	ENSGT00940000175375	ENSGT00940000156877	ENSGT00390000013956	ENSGT01000000214434.B.a.b	ENSGT00940000153695.B	ENSGT00390000005596.a	ENSGT00940000158272.c.a	ENSGT00940000169105	ENSGT00950000182852.A.a.b.c	ENSGT00940000158839	ENSGT00500000044870.a	ENSGT00940000154790.a.a.a ##22	ENSGT00940000154840.b.f.c.a	ENSGT01090000260459	ENSGT00940000154840.b.f.c.b	ENSGT01100000263585	ENSGT00940000156702.a.b.b	ENSGT01040000240451.a.a.d	ENSGT00940000163418.D	ENSGT00940000177589	ENSGT00940000163418.A.a.b	ENSGT00940000161126	ENSGT00390000005935	ENSGT01090000260005.a.a.a.b.a.b.b	ENSGT00940000158471	ENSGT00940000158542.a	ENSGT00940000155890.a.b
Percomorphaceae_C	ANCESTRAL SPECIES	23	ENSGT00390000010543	ENSGT00940000155318.b.b	ENSGT01030000234635.a.b.a.b.a	ENSGT00940000159144.A.e.a	ENSGT00940000175375	ENSGT00940000156877	ENSGT00390000013956	ENSGT01000000214434.B.a.b	ENSGT00940000153695.B	ENSGT00390000005596.a	ENSGT00940000158272.c.a	ENSGT00940000169105	ENSGT00950000182852.A.a.b.c	ENSGT00940000158839	ENSGT00500000044870.a	ENSGT00940000154790.a.a.a ##22	ENSGT00940000154840.b.f.c.a	ENSGT01100000263585	ENSGT00940000154840.b.f.c.b	ENSGT00940000156702.a.b.b	ENSGT01040000240451.a.a.d	ENSGT00940000163418.D	ENSGT00390000005935	ENSGT01090000260005.a.a.a.b.a.b.b	ENSGT00940000158471	ENSGT00940000158542.a	ENSGT00940000155890.a.b	ENSGT00940000176837	ENSGT00940000155400.A	ENSGT00940000154453.a.b.a.a.b	ENSGT00940000157249
Eupercaria	ANCESTRAL SPECIES	23	ENSGT00940000156365	ENSGT00390000010543	ENSGT00940000155318.b.b	ENSGT01030000234635.a.b.a.b.a	ENSGT00940000178584	ENSGT00940000156877	ENSGT00390000013956	ENSGT01000000214434.B.a.b	ENSGT00940000153695.B	ENSGT00390000005596.a	ENSGT00940000158272.c.a	ENSGT00940000169105	ENSGT00950000182852.A.a.b.c	ENSGT00940000158839	ENSGT00500000044870.a	ENSGT00940000154790.a.a.a ##22	ENSGT00940000154840.b.f.c.a	ENSGT01100000263585	ENSGT00940000154840.b.f.c.b	ENSGT00940000156702.a.b.b	ENSGT01040000240451.a.a.d	ENSGT00940000163418.D	ENSGT00390000005935	ENSGT01090000260005.a.a.a.b.a.b.b	ENSGT00940000158471	ENSGT00940000158542.a	ENSGT00940000155890.a.b	ENSGT00940000176837	ENSGT00940000155400.A	ENSGT00940000154453.a.b.a.a.b	ENSGT00940000157249
Tetraodontidae	ANCESTRAL SPECIES	26	ENSGT00940000159723	ENSGT00940000154851.A.l	ENSGT00940000166110	ENSGT00940000159616	ENSGT00390000014242.k.c	ENSGT00390000009940	ENSGT00950000182882.A.b.b.f	ENSGT00950000183165.b.a.e.a	ENSGT01000000214434.B.a.b	ENSGT00940000153695.B	ENSGT00390000005596.a	ENSGT00940000158272.c.a	ENSGT00950000182852.A.a.b.c	ENSGT00940000158839	ENSGT00500000044870.a	ENSGT00940000154790.a.a.a ##22	ENSGT01100000263585	ENSGT00940000154840.b.f.c.b.c	ENSGT00940000156702.a.b.b	ENSGT01040000240451.a.a.d	ENSGT00940000163418.D	ENSGT01090000260005.a.a.a.b.a.b.b	ENSGT00940000158471	ENSGT00940000158542.a	ENSGT00940000155890.a.b	ENSGT00940000155400.A	ENSGT00940000157249	ENSGT00940000155408.o.b
Fugu	MODERN SPECIES	20	ZNF513 (ENSTRUG00000011706)	dusp27 (ENSTRUG00000011751)	ENSTRUG00000011796	gp91phox (ENSTRUG00000011809)	tdp2b (ENSTRUG00000012085)	nhej1 (ENSTRUG00000020336)	bin1b (ENSTRUG00000012332)	si:ch211-114n24.6 (ENSTRUG00000023619)	ENSTRUG00000012417	jagn1b (ENSTRUG00000012548)	COL8A1 (ENSTRUG00000012571)	ENSTRUG00000024668	FILIP1L (ENSTRUG00000012610)	ENSTRUG00000012669	ccdc28a (ENSTRUG00000020271)	ENSTRUG00000012738 ##22	ENSTRUG00000029548	atp1a1a.2 (ENSTRUG00000012850)	CTDSP1 (ENSTRUG00000023492)	spega (ENSTRUG00000033164)	ENSTRUG00000003267	stk11ip (ENSTRUG00000013564)	igfbp2a (ENSTRUG00000013702)	igfbp5a (ENSTRUG00000020976)	lancl1 (ENSTRUG00000008880)	RAMP1 (ENSTRUG00000014618)	si:ch211-93g23.2 (ENSTRUG00000014609)	ENSTRUG00000029169	ENSTRUG00000026686	SLC19A1 (ENSTRUG00000027993)	ENSTRUG00000031585
Tetraodon	MODERN SPECIES	18	clcn4 (ENSTNIG00000010254)	ENSTNIG00000010255	ZNF513 (ENSTNIG00000010256)	ENSTNIG00000001786	cybb (ENSTNIG00000010258)	ENSTNIG00000010259	tdp2b (ENSTNIG00000010260)	ENSTNIG00000008898	ENSTNIG00000010262	ENSTNIG00000010263	jagn1b (ENSTNIG00000010264)	COL8A1 (ENSTNIG00000010265)	FILIP1L (ENSTNIG00000010266)	ENSTNIG00000001353	ccdc28a (ENSTNIG00000010267)	ENSTNIG00000004923 ##22	ATP1A1 (ENSTNIG00000006396)	ENSTNIG00000006257	obsl1a (ENSTNIG00000008348)	CTDSP1 (ENSTNIG00000008347)	spega (ENSTNIG00000008346)	ENSTNIG00000008345	igfbp2a (ENSTNIG00000008344)	igfbp5a (ENSTNIG00000008343)	ENSTNIG00000008342	ENSTNIG00000008341	mettl21a (ENSTNIG00000008340)	CREB1 (ENSTNIG00000008339)	ENSTNIG00000008338	unc50 (ENSTNIG00000008337)	ENSTNIG00000008336
Eupecaria_A	ANCESTRAL SPECIES	23	ENSGT00940000156365	ENSGT00390000010543	ENSGT00940000155318.b.b	ENSGT01030000234635.a.b.a.b.a	ENSGT00940000178584	ENSGT00940000156877	ENSGT00390000013956	ENSGT01000000214434.B.a.b	ENSGT00940000153695.B	ENSGT00390000005596.a	ENSGT00940000158272.c.a	ENSGT00940000169105	ENSGT00950000182852.A.a.b.c	ENSGT00940000158839	ENSGT00500000044870.a	ENSGT00940000154790.a.a.a ##22	ENSGT00940000154840.b.f.c.a	ENSGT01100000263585	ENSGT00940000154840.b.f.c.b	ENSGT00940000156702.a.b.b	ENSGT01040000240451.a.a.d	ENSGT00940000163418.D	ENSGT00390000005935	ENSGT01090000260005.a.a.a.b.a.b.b	ENSGT00940000158471	ENSGT00940000158542.a	ENSGT00940000155890.a.b	ENSGT00940000176837	ENSGT00940000155400.A	ENSGT00940000154453.a.b.a.a.b	ENSGT00940000157249
Ballan wrasse	MODERN SPECIES	177	ENSLBEG00000015263	ENSLBEG00000015241	mbnl2 (ENSLBEG00000015200)	rap2ab (ENSLBEG00000015171)	mrpl39 (ENSLBEG00000015152)	jam2a (ENSLBEG00000015125)	ENSLBEG00000015085	ENSLBEG00000015070	ENSLBEG00000015056	jagn1b (ENSLBEG00000015019)	COL8A1 (ENSLBEG00000014993)	ENSLBEG00000014962	FILIP1L (ENSLBEG00000014937)	ENSLBEG00000014897	ccdc28a (ENSLBEG00000014880)	ENSLBEG00000014841 ##22	ENSLBEG00000014756	ENSLBEG00000014730	ENSLBEG00000014685	obsl1a (ENSLBEG00000014588)	CTDSP1 (ENSLBEG00000014530)	spega (ENSLBEG00000014437)	inha (ENSLBEG00000014403)	ENSLBEG00000014385	ENSLBEG00000014361	igfbp2a (ENSLBEG00000014348)	igfbp5a (ENSLBEG00000014331)	ENSLBEG00000014316	ENSLBEG00000014213	ENSLBEG00000014131	ENSLBEG00000014075
Eupecaria_B	ANCESTRAL SPECIES	23	ENSGT00940000156365	ENSGT00390000010543	ENSGT00940000155318.b.b	ENSGT01030000234635.a.b.a.b.a	ENSGT00940000159144.A.f	ENSGT00940000156877	ENSGT00390000013956	ENSGT01000000214434.B.a.b	ENSGT00940000153695.B	ENSGT00390000005596.a	ENSGT00940000158272.c.a	ENSGT00940000169105	ENSGT00950000182852.A.a.b.c	ENSGT00940000158839	ENSGT00500000044870.a	ENSGT00940000154790.a.a.a ##22	ENSGT00940000154840.b.f.c.a	ENSGT01100000263585	ENSGT00940000154840.b.f.c.b	ENSGT00940000156702.a.b.b	ENSGT01040000240451.a.a.d	ENSGT00940000163418.D	ENSGT00390000005935	ENSGT01090000260005.a.a.a.b.a.b.b	ENSGT00940000158471	ENSGT00940000158542.a	ENSGT00940000155890.a.b	ENSGT00940000155400.A	ENSGT00940000154453.a.b.a.a.b	ENSGT00940000157249	ENSGT00940000155408.o.b
Perciformes	ANCESTRAL SPECIES	24				ENSGT00940000159144.A.e.a	ENSGT00940000175375	ENSGT00940000156877	ENSGT00390000013956	ENSGT01000000214434.B.a.b	ENSGT00940000153695.B	ENSGT00390000005596.a	ENSGT00940000158272.c.a	ENSGT00940000169105	ENSGT00950000182852.A.a.b.c	ENSGT00940000158839	ENSGT00500000044870.a	ENSGT00940000154790.a.a.a ##22	ENSGT00940000154840.b.f.c.a	ENSGT01100000263585	ENSGT00940000154840.b.f.c.b	ENSGT00940000156702.a.b.b	ENSGT01040000240451.a.a.d	ENSGT00940000163418.D	ENSGT00390000005935	ENSGT01090000260005.a.a.a.b.a.b.b	ENSGT00940000158471	ENSGT00940000158542.a	ENSGT00940000155890.a.b	ENSGT00940000155400.A	ENSGT00940000154453.a.b.a.a.b	ENSGT00940000157249	ENSGT00940000155408.o.b
Cottioidei	ANCESTRAL SPECIES	24	ENSGT00940000159942.a.c.a	ENSGT00940000161628	ENSGT00940000154344.b	ENSGT00940000159144.A.e.a	ENSGT00940000175375	ENSGT00940000156877	ENSGT00390000013956	ENSGT01000000214434.B.a.b	ENSGT00940000153695.B	ENSGT00390000005596.a	ENSGT00940000158272.c.a	ENSGT00940000171777	ENSGT00950000182852.A.a.b.c	ENSGT00940000158839	ENSGT00500000044870.a	ENSGT00940000154790.a.a.a ##22	ENSGT00940000154840.b.f.c.a	ENSGT00940000154840.b.f.c.b	ENSGT00940000156702.a.b.b	ENSGT01040000240451.a.a.d	ENSGT00940000163418.D	ENSGT00390000005935	ENSGT01090000260005.a.a.a.b.a.b.b	ENSGT00940000158471	ENSGT00940000158542.a	ENSGT00940000155890.a.b	ENSGT00940000155400.A	ENSGT00940000176837	ENSGT00940000154453.a.b.a.a.b	ENSGT00940000153981.A	ENSGT00940000159196
Lumpfish	MODERN SPECIES	11	ENSCLMG00005006496	FARP1 (ENSCLMG00005005518)	ggact.3 (ENSCLMG00005005507)	arl13b (ENSCLMG00005005504)	ENSCLMG00005005503	NCAM2 (ENSCLMG00005005502)	ENSCLMG00005005501	ENSCLMG00005005499	ENSCLMG00005005497	jagn1b (ENSCLMG00005005495)	COL8A1 (ENSCLMG00005005494)	ENSCLMG00005005492	FILIP1L (ENSCLMG00005005481)	ENSCLMG00005005465	ccdc28a (ENSCLMG00005005458)	ENSCLMG00005005457 ##22	atp1a1a.2 (ENSCLMG00005003148)	OBSL1 (ENSCLMG00005003015)	CYP4F8 (ENSCLMG00005002994)	ENSCLMG00005002983	SLC19A1 (ENSCLMG00005002976)	ENSCLMG00005002970	arpc2 (ENSCLMG00005002833)	ENSCLMG00005016676	ENSCLMG00005016675	ENSCLMG00005016674	aamp (ENSCLMG00005016669)	HDAC4 (ENSCLMG00005015160)	ENSCLMG00005015149	ENSCLMG00005015148	TCEANC (ENSCLMG00005015145)
Stickleback	MODERN SPECIES		ENSGACG00000014436	fam184aa (ENSGACG00000014429)	ENSGACG00000014424	ENSGACG00000014419	ENSGACG00000014407	ENSGACG00000014396	GPR180 (ENSGACG00000014388)	ENSGACG00000014378	jagn1b (ENSGACG00000014376)	COL8A1 (ENSGACG00000014373)	ENSGACG00000014371	ENSGACG00000014367	FILIP1L (ENSGACG00000014358)	ENSGACG00000014353	ccdc28a (ENSGACG00000014349)	ENSGACG00000014345 ##22	atp1a1a.2 (ENSGACG00000014324)	obsl1a (ENSGACG00000014323)	ENSGACG00000014321	CTDSP1 (ENSGACG00000014313)	spega (ENSGACG00000014299)	inha (ENSGACG00000014296)	ENSGACG00000014294	stk11ip (ENSGACG00000014289)	igfbp2a (ENSGACG00000014280)	igfbp5a (ENSGACG00000014275)	ENSGACG00000014274	ENSGACG00000014268	jagn1b (ENSGACG00000014256)	n6amt1 (ENSGACG00000014248)	gart (ENSGACG00000014244)
Perciformes_a	ANCESTRAL SPECIES	25				ENSGT00940000159144.A.e.a	ENSGT00940000175375	ENSGT00940000156877	ENSGT00390000013956	ENSGT01000000214434.B.a.b	ENSGT00940000153695.B	ENSGT00390000005596.a	ENSGT00940000158272.c.a	ENSGT00940000169105	ENSGT00950000182852.A.a.b.c	ENSGT00940000158839	ENSGT00500000044870.a	ENSGT00940000154790.a.a.a ##22	ENSGT00940000154840.b.f.c.a	ENSGT01100000263585	ENSGT00940000154840.b.f.c.b	ENSGT00940000156702.a.b.b	ENSGT01040000240451.a.a.d	ENSGT00390000005935	ENSGT01090000260005.a.a.a.b.a.b.b	ENSGT00940000158471	ENSGT00940000158542.a	ENSGT00940000155890.a.b	ENSGT00940000155400.A	ENSGT00940000154453.a.b.a.a.b	ENSGT00940000157249	ENSGT00940000155408.o.b	ENSGT00940000155235.k.b
Channel bull blenny	MODERN SPECIES	11	cpo (ENSCGOG00000000424)	cckbra (ENSCGOG00000000429)	nudt15 (ENSCGOG00000000432)	ENSCGOG00000000434	ENSCGOG00000000435	ENSCGOG00000000438	ENSCGOG00000000483	ENSCGOG00000000696	ENSCGOG00000001076	jagn1b (ENSCGOG00000001078)	COL8A1 (ENSCGOG00000001079)	FILIP1L (ENSCGOG00000001081)	ENSCGOG00000001082	ccdc28a (ENSCGOG00000001087)	ENSCGOG00000001090	ENSCGOG00000001092 ##22	ENSCGOG00000001097	atp1a1a.2 (ENSCGOG00000001511)	ENSCGOG00000015155	obsl1a (ENSCGOG00000015161)	CTDSP1 (ENSCGOG00000015229)	inha (ENSCGOG00000015271)	ENSCGOG00000015272	stk11ip (ENSCGOG00000015278)	igfbp2a (ENSCGOG00000015300)	igfbp5a (ENSCGOG00000015302)	ENSCGOG00000015311	ENSCGOG00000016221	ENSCGOG00000016222	mettl21a (ENSCGOG00000016258)	CREB1 (ENSCGOG00000016247)
Pike perch	MODERN SPECIES	9	tmem47 (ENSSLUG00000025979)	ENSSLUG00000025981	zgc:65895 (ENSSLUG00000025986)	ENSSLUG00000025987	ENSSLUG00000025990	ENSSLUG00000025991	ENSSLUG00000025996	ENSSLUG00000026010	jagn1b (ENSSLUG00000026012)	COL8A1 (ENSSLUG00000026013)	ENSSLUG00000026014	FILIP1L (ENSSLUG00000026015)	ENSSLUG00000026018	ccdc28a (ENSSLUG00000026019)	ENSSLUG00000026020	ENSSLUG00000026021 ##22	ATP1A1 (ENSSLUG00000026029)	ENSSLUG00000026063	ENSSLUG00000026087	ENSSLUG00000026107	ENSSLUG00000026108	ENSSLUG00000026109	ENSSLUG00000026111	acadl (ENSSLUG00000026112)	mylz3 (ENSSLUG00000026113)	lancl1 (ENSSLUG00000026114)	erbb4a (ENSSLUG00000026115)	RAMP1 (ENSSLUG00000026116)	si:ch211-93g23.2 (ENSSLUG00000026117)	si:ch211-93g23.2 (ENSSLUG00000026118)	klf7a (ENSSLUG00000026119)
Eupecaria_C	ANCESTRAL SPECIES	30	ENSGT00940000156365	ENSGT00390000010543	ENSGT00940000155318.b.b	ENSGT01030000234635.a.b.a.b.a	ENSGT00940000159144.A.e.a	ENSGT00940000156877	ENSGT00390000013956	ENSGT01000000214434.B.a.b	ENSGT00940000153695.B	ENSGT00390000005596.a	ENSGT00940000158272.c.a	ENSGT00940000169105	ENSGT00950000182852.A.a.b.c	ENSGT00940000158839	ENSGT00500000044870.a	ENSGT00940000154790.a.a.a ##22	ENSGT00940000154840.b.f.c.a	ENSGT01100000263585	ENSGT00940000154840.b.f.c.b	ENSGT00940000156702.a.b.b	ENSGT01040000240451.a.a.d	ENSGT00940000163418.D	ENSGT00390000005935	ENSGT01090000260005.a.a.a.b.a.b.b	ENSGT00940000158471	ENSGT00940000158542.a	ENSGT00940000155890.a.b	ENSGT00940000155400.A	ENSGT00940000154453.a.b.a.a.b	ENSGT00940000157249	ENSGT00940000155408.o.b
Eupercaria_incertae_sedis	ANCESTRAL SPECIES	41	ENSGT00940000156365	ENSGT00390000010543	ENSGT00940000155318.b.b	ENSGT01030000234635.a.b.a.b.a	ENSGT00940000159144.A.f	ENSGT00940000175375	ENSGT00940000156877	ENSGT00390000013956	ENSGT01000000214434.B.a.b	ENSGT00390000005596.a	ENSGT00940000158272.c.a	ENSGT00940000169105	ENSGT00950000182852.A.a.b.c	ENSGT00940000158839	ENSGT00500000044870.a	ENSGT00940000154790.a.a.a ##22	ENSGT00940000154840.b.f.c.a	ENSGT01100000263585	ENSGT00940000156702.a.b.b	ENSGT01040000240451.a.a.d	ENSGT00940000163418.D	ENSGT00390000005935	ENSGT01090000260005.a.a.a.b.a.b.b	ENSGT00940000158471	ENSGT00940000158542.a	ENSGT00940000155890.a.b	ENSGT00940000155400.A	ENSGT00940000154453.a.b.a.a.b	ENSGT00940000157249	ENSGT00940000155408.o.b	ENSGT00940000155235.k.b
European seabass	MODERN SPECIES	15	ENSDLAG00005033679	ENSDLAG00005010799	ENSDLAG00005009709	ENSDLAG00005031513	ENSDLAG00005009274	ENSDLAG00005008916	ENSDLAG00005034796	ENSDLAG00005033899	ENSDLAG00005008866	ENSDLAG00005008856	ENSDLAG00005008723	jagn1b (ENSDLAG00005008710)	ENSDLAG00005034157	ENSDLAG00005008697	ENSDLAG00005008692	ENSDLAG00005008587 ##22	ENSDLAG00005008623	ENSDLAG00005008580	ENSDLAG00005001937	ENSDLAG00005008575	obsl1a (ENSDLAG00005001666)	ENSDLAG00005031224	spega (ENSDLAG00005001309)	inha (ENSDLAG00005001265)	ENSDLAG00005001248	stk11ip (ENSDLAG00005026309)	igfbp2a (ENSDLAG00005026308)	igfbp5a (ENSDLAG00005031221)	ENSDLAG00005026299	ENSDLAG00005034442	METTL21A (ENSDLAG00005032128)
Large yellow croaker	MODERN SPECIES	486	ENSLCRG00005001071	cybb (ENSLCRG00005001094)	dynlt3 (ENSLCRG00005001390)	rpgrb (ENSLCRG00005001404)	nhej1 (ENSLCRG00005001412)	ENSLCRG00005001416	ihhb (ENSLCRG00005001418)	bin1b (ENSLCRG00005001440)	si:ch211-114n24.6 (ENSLCRG00005002033)	jagn1b (ENSLCRG00005002054)	COL8A1 (ENSLCRG00005002058)	ENSLCRG00005002063	FILIP1L (ENSLCRG00005002068)	ENSLCRG00005002075	ccdc28a (ENSLCRG00005002088)	ENSLCRG00005002096 ##22	atp1a1a.2 (ENSLCRG00005002126)	obsl1a (ENSLCRG00005003532)	CTDSP1 (ENSLCRG00005003597)	spega (ENSLCRG00005003627)	inha (ENSLCRG00005003650)	ENSLCRG00005003652	stk11ip (ENSLCRG00005003656)	igfbp2a (ENSLCRG00005003663)	igfbp5a (ENSLCRG00005003666)	ENSLCRG00005003684	ENSLCRG00005004184	mettl21a (ENSLCRG00005004270)	CREB1 (ENSLCRG00005004271)	klf7a (ENSLCRG00005004301)	si:ch211-93g23.2 (ENSLCRG00005004302)
Gilthead seabream	MODERN SPECIES	16	ENSSAUG00010027013	ENSSAUG00010027009	ENSSAUG00010027007	ENSSAUG00010027006	ENSSAUG00010027004	ENSSAUG00010027003	ENSSAUG00010027002	ENSSAUG00010026999	ENSSAUG00010026988	jagn1b (ENSSAUG00010026976)	ENSSAUG00010026974	ENSSAUG00010026972	FILIP1L (ENSSAUG00010026967)	ENSSAUG00010026962	ccdc28a (ENSSAUG00010026959)	ENSSAUG00010026957 ##22	ENSSAUG00010026956	atp1a1a.2 (ENSSAUG00010025170)	obsl1a (ENSSAUG00010024878)	CTDSP1 (ENSSAUG00010024864)	spega (ENSSAUG00010024860)	ENSSAUG00010024748	ENSSAUG00010024733	ENSSAUG00010024714	stk11ip (ENSSAUG00010024706)	igfbp2a (ENSSAUG00010024704)	igfbp5a (ENSSAUG00010024703)	ENSSAUG00010024206	ENSSAUG00010024190	ENSSAUG00010024189	mettl21a (ENSSAUG00010024187)
Percomorphaceae_D	ANCESTRAL SPECIES	23	ENSGT00390000010543	ENSGT00940000155318.b.b	ENSGT01030000234635.a.b.a.b.a	ENSGT00940000159144.A.e.a	ENSGT00940000175375	ENSGT00940000156877	ENSGT00390000013956	ENSGT01000000214434.B.a.b	ENSGT00940000153695.B	ENSGT00390000005596.a	ENSGT00940000158272.c.a	ENSGT00940000169105	ENSGT00950000182852.A.a.b.c	ENSGT00940000158839	ENSGT00500000044870.a	ENSGT00940000154790.a.a.a ##22	ENSGT01100000263585.f	ENSGT00940000154840.b.f.c.b	ENSGT01100000263585.e.a	ENSGT00940000154840.b.f.c.a	ENSGT01100000263585.e.b	ENSGT00940000156702.a.b.b	ENSGT01040000240451.a.a.d	ENSGT00940000163418.D	ENSGT00390000005935	ENSGT01090000260005.a.a.a.b.a.b.b	ENSGT00940000158471	ENSGT00940000158542.a	ENSGT00940000155890.a.b	ENSGT00940000176837	ENSGT00940000155400.A
Anabantaria	ANCESTRAL SPECIES	14	ENSGT00940000156365	ENSGT00390000010543	ENSGT00940000155318.b.b	ENSGT01030000234635.a.b.a.b.a	ENSGT00390000005130	ENSGT00940000156877	ENSGT00390000013956	ENSGT01000000214434.B.a.b	ENSGT00940000153695.B	ENSGT00390000005596.a	ENSGT00940000158272.c.a	ENSGT00940000169105	ENSGT00950000182852.A.a.b.c	ENSGT00940000158839	ENSGT00500000044870.a	ENSGT00940000154790.a.a.a ##22	ENSGT00940000154840.b.f.c.a	ENSGT01100000263585.f	ENSGT00940000154840.b.f.c.b	ENSGT01100000263585.e.a	ENSGT00940000156702.a.b.b	ENSGT01040000240451.a.a.d	ENSGT00940000163418.D	ENSGT00390000005935	ENSGT01090000260005.a.a.a.b.a.b.b	ENSGT00940000158471	ENSGT00940000158542.a	ENSGT00940000155890.a.b	ENSGT00940000176837	ENSGT00940000155400.A	ENSGT00940000154453.a.b.a.a.b
Zig-zag eel	MODERN SPECIES	11	ENSMAMG00000021515	ENSMAMG00000021484	ENSMAMG00000026854	ENSMAMG00000021458	ENSMAMG00000021481	ENSMAMG00000021452	ENSMAMG00000026084	ENSMAMG00000023088	ENSMAMG00000021442	ENSMAMG00000021307	ENSMAMG00000021303	ENSMAMG00000021301	ENSMAMG00000021300	ENSMAMG00000021299	ENSMAMG00000021298	ENSMAMG00000021296 ##22	ENSMAMG00000021281	ENSMAMG00000021265	ENSMAMG00000021256	ENSMAMG00000021276	obsl1a (ENSMAMG00000021250)	ENSMAMG00000025232	spega (ENSMAMG00000021230)	inha (ENSMAMG00000021227)	ENSMAMG00000021223	stk11ip (ENSMAMG00000021220)	igfbp2a (ENSMAMG00000021218)	igfbp5a (ENSMAMG00000021214)	ENSMAMG00000021206	ENSMAMG00000027480	METTL21A (ENSMAMG00000026332)
Anabantoidei	ANCESTRAL SPECIES	23	ENSGT00940000156365	ENSGT00390000010543	ENSGT00940000155318.b.b	ENSGT01030000234635.a.b.a.b.a	ENSGT00390000005130	ENSGT00940000156877	ENSGT00390000013956	ENSGT01000000214434.B.a.b	ENSGT00940000153695.B	ENSGT00390000005596.a	ENSGT00940000158272.c.a	ENSGT00940000169105	ENSGT00950000182852.A.a.b.c	ENSGT00940000158839	ENSGT00500000044870.a	ENSGT00940000154790.a.a.a ##22	ENSGT00940000154840.b.f.c.a	ENSGT01100000263585.f	ENSGT00940000154840.b.f.c.b	ENSGT01100000263585.e.a	ENSGT00940000156702.a.b.b	ENSGT01040000240451.a.a.d	ENSGT00940000163418.D	ENSGT00390000005935	ENSGT01090000260005.a.a.a.b.a.b.b	ENSGT00940000158471	ENSGT00940000158542.a	ENSGT00940000155890.a.b	ENSGT00940000176837	ENSGT00940000155400.A	ENSGT00940000154453.a.b.a.a.b
Siamese fighting fish	MODERN SPECIES	10	FARP1 (ENSBSLG00000001406)	chn1 (ENSBSLG00000001277)	ENSBSLG00000001209	ENSBSLG00000001189	ENSBSLG00000000916	ENSBSLG00000000912	ENSBSLG00000000907	ENSBSLG00000000871	ENSBSLG00000000839	jagn1b (ENSBSLG00000000831)	ENSBSLG00000000829	FILIP1L (ENSBSLG00000000822)	ENSBSLG00000000818	ENSBSLG00000000806	ccdc28a (ENSBSLG00000000804)	ENSBSLG00000000800 ##22	ATP1A1 (ENSBSLG00000000739)	ENSBSLG00000000717	ENSBSLG00000000711	ENSBSLG00000000359	obsl1a (ENSBSLG00000000192)	CTDSP1 (ENSBSLG00000000123)	inha (ENSBSLG00000022940)	ENSBSLG00000022921	stk11ip (ENSBSLG00000022845)	igfbp2a (ENSBSLG00000022803)	igfbp5a (ENSBSLG00000022607)	ENSBSLG00000022605	ENSBSLG00000022466	ENSBSLG00000022388	mettl21a (ENSBSLG00000022369)
Climbing perch	MODERN SPECIES	11	ENSATEG00000017546	ENSATEG00000017488	ENSATEG00000017469	ENSATEG00000017447	ENSATEG00000027904	ENSATEG00000028401	ENSATEG00000026081	ENSATEG00000017314	ENSATEG00000017276	jagn1b (ENSATEG00000025315)	ENSATEG00000017259	ENSATEG00000029263	ENSATEG00000017244	ENSATEG00000017222	ENSATEG00000028636	ENSATEG00000017165 ##22	ENSATEG00000017119	ENSATEG00000017044	ENSATEG00000017105	ENSATEG00000025533	ENSATEG00000029999	ENSATEG00000016858	ENSATEG00000028227	spega (ENSATEG00000016711)	inha (ENSATEG00000016691)	ENSATEG00000016685	stk11ip (ENSATEG00000016659)	igfbp2a (ENSATEG00000016648)	igfbp5a (ENSATEG00000016633)	ENSATEG00000016553	ENSATEG00000016462
Carangaria	ANCESTRAL SPECIES	23	ENSGT00390000010543	ENSGT00940000155318.b.b	ENSGT01030000234635.a.b.a.b.a	ENSGT00940000159144.A.e.a	ENSGT00940000175375	ENSGT00940000156877	ENSGT00390000013956	ENSGT01000000214434.B.a.b	ENSGT00940000153695.B	ENSGT00390000005596.a	ENSGT00940000158272.c.a	ENSGT00940000169105	ENSGT00950000182852.A.a.b.c	ENSGT00940000158839	ENSGT00500000044870.a	ENSGT00940000154790.a.a.a ##22	ENSGT00940000154840.b.f.c.a	ENSGT01100000263585.e.a	ENSGT01100000263585.f	ENSGT00940000154840.b.f.c.b	ENSGT01100000263585.e.b	ENSGT00940000156702.a.b.b	ENSGT01040000240451.a.a.d	ENSGT00940000163418.D	ENSGT00390000005935	ENSGT01090000260005.a.a.a.b.a.b.b	ENSGT00940000158471	ENSGT00940000158542.a	ENSGT00940000155890.a.b	ENSGT00940000176837	ENSGT00940000177880
Pleuronectoidei	ANCESTRAL SPECIES	62	ENSGT00940000156365	ENSGT00390000010543	ENSGT00940000155318.b.b	ENSGT01030000234635.a.b.a.b.a	ENSGT00390000005130	ENSGT00940000156877	ENSGT00390000013956	ENSGT01000000214434.B.a.b	ENSGT00940000153695.B	ENSGT00390000005596.a	ENSGT00940000158272.c.a	ENSGT00940000169105	ENSGT00950000182852.A.a.b.c	ENSGT00940000158839	ENSGT00500000044870.a	ENSGT00940000154790.a.a.a ##22	ENSGT01100000263585.f	ENSGT00940000154840.b.f.c.b	ENSGT00940000156702.a.b.b
Turbot	MODERN SPECIES		ENSSMAG00000015522	ENSSMAG00000015648	ENSSMAG00000015691	ENSSMAG00000015699	ENSSMAG00000028514	ENSSMAG00000015740	ENSSMAG00000015714	ENSSMAG00000015752	ENSSMAG00000036569	jagn1b (ENSSMAG00000015803)	ENSSMAG00000015817	ENSSMAG00000015826	ENSSMAG00000015838	ENSSMAG00000015855	ENSSMAG00000015876	ENSSMAG00000015891 ##22	ENSSMAG00000000767	ENSSMAG00000016653	ENSSMAG00000000792	ENSSMAG00000000890	nhej1 (ENSSMAG00000000932)	ENSSMAG00000000951	bin1b (ENSSMAG00000000969)	ENSSMAG00000001062	tmem198b (ENSSMAG00000001083)	desmb (ENSSMAG00000001121)	dnpep (ENSSMAG00000001132)	PTPRN (ENSSMAG00000001165)	ENSSMAG00000001218	ENSSMAG00000001247	ENSSMAG00000001269
Tongue sole	MODERN SPECIES	5	ENSCSEG00000001221	tmem230a (ENSCSEG00000001217)	ENSCSEG00000001209	LRRTM4 (ENSCSEG00000001196)	DGKZ (ENSCSEG00000001180)	cryaa (ENSCSEG00000001151)	ENSCSEG00000001148	ENSCSEG00000001143	ENSCSEG00000001137	cbsa (ENSCSEG00000001129)	u2af1 (ENSCSEG00000001122)	zgc:172122 (ENSCSEG00000001113)	ENSCSEG00000001111	JAGN1 (ENSCSEG00000001103)	FAM171B (ENSCSEG00000001098)	ENSCSEG00000001091 ##22	ENSCSEG00000001088	ENSCSEG00000001086	ATP1A1 (ENSCSEG00000001076)	ENSCSEG00000001070	ENSCSEG00000001057	rpgrb (ENSCSEG00000001033)	si:ch211-114n24.6 (ENSCSEG00000001027)	bin1b (ENSCSEG00000001008)	ihhb (ENSCSEG00000000996)	ENSCSEG00000000969	COL8A1 (ENSCSEG00000000963)	FILIP1L (ENSCSEG00000000958)	ENSCSEG00000000946	ENSCSEG00000000939	ENSCSEG00000000903
Carangaria_A	ANCESTRAL SPECIES	23	ENSGT00940000155318.b.b	ENSGT01030000234635.a.b.a.b.a	ENSGT00940000159144.B	ENSGT00940000159144.A.e.a	ENSGT00940000175375	ENSGT00940000156877	ENSGT00390000013956	ENSGT01000000214434.B.a.b	ENSGT00940000153695.B	ENSGT00390000005596.a	ENSGT00940000158272.c.a	ENSGT00940000169105	ENSGT00950000182852.A.a.b.c	ENSGT00940000158839	ENSGT00500000044870.a	ENSGT00940000154790.a.a.a ##22	ENSGT00940000154840.b.f.c.a	ENSGT01100000263585.e.a	ENSGT00940000154840.b.f.c.b	ENSGT01100000263585.e.b	ENSGT00940000156702.a.b.b	ENSGT01040000240451.a.a.d	ENSGT00940000163418.D	ENSGT00390000005935	ENSGT01090000260005.a.a.a.b.a.b.b	ENSGT00940000158471	ENSGT00940000158542.a	ENSGT00940000155890.a.b	ENSGT00940000176837	ENSGT00940000155400.A	ENSGT00940000154453.a.b.a.a.b
Seriola	ANCESTRAL SPECIES	44	ENSGT00390000010543	ENSGT00940000155318.b.b	ENSGT01030000234635.a.b.a.b.a	ENSGT00940000159144.A.e.a	ENSGT00940000175375	ENSGT00940000156877	ENSGT00390000013956	ENSGT01000000214434.B.a.b	ENSGT00940000153695.B	ENSGT00390000005596.a	ENSGT00940000158272.c.a	ENSGT00940000169105	ENSGT00950000182852.A.a.b.c	ENSGT00940000158839	ENSGT00500000044870.a	ENSGT00940000154790.a.a.a ##22	ENSGT01100000263585.e.a	ENSGT00940000154840.b.f.c.a	ENSGT00940000154840.b.f.c.b	ENSGT00940000156702.a.b.b	ENSGT01040000240451.a.a.d	ENSGT00940000163418.D	ENSGT00730000111912.A.b.h.b	ENSGT00940000168817.v	ENSGT00390000005935	ENSGT01090000260005.a.a.a.b.a.b.b	ENSGT00940000158471	ENSGT00940000158542.a	ENSGT00940000155890.a.b	ENSGT00940000155400.A	ENSGT00940000154453.a.b.a.a.b
Greater amberjack	MODERN SPECIES	8					zgc:65895 (ENSSDUG00000022619)	ENSSDUG00000022614	ENSSDUG00000022608	ENSSDUG00000022603	ENSSDUG00000022588	jagn1b (ENSSDUG00000022584)	COL8A1 (ENSSDUG00000022581)	ENSSDUG00000022575	FILIP1L (ENSSDUG00000022571)	ENSSDUG00000022543	ccdc28a (ENSSDUG00000022533)	ENSSDUG00000022523 ##22	ENSSDUG00000022521	ENSSDUG00000022513	ATP1A1 (ENSSDUG00000022483)	obsl1a (ENSSDUG00000022471)	CTDSP1 (ENSSDUG00000022464)	spega (ENSSDUG00000022403)	ENSSDUG00000022396	ENSSDUG00000022391	inha (ENSSDUG00000022385)	ENSSDUG00000022382	stk11ip (ENSSDUG00000022373)	igfbp2a (ENSSDUG00000022368)	igfbp5a (ENSSDUG00000022364)	ENSSDUG00000022345	ENSSDUG00000022335
Yellowtail amberjack	MODERN SPECIES	3005											COL8A1 (ENSSLDG00000006992)	ENSSLDG00000006980	FILIP1L (ENSSLDG00000006948)	ENSSLDG00000006915	ccdc28a (ENSSLDG00000006899)	ENSSLDG00000006864 ##22	ATP1A1 (ENSSLDG00000006796)	ENSSLDG00000006733	obsl1a (ENSSLDG00000006670)	CTDSP1 (ENSSLDG00000006608)	spega (ENSSLDG00000006523)	ENSSLDG00000006483	ENSSLDG00000006464	ENSSLDG00000006455	inha (ENSSLDG00000006429)	ENSSLDG00000006412	stk11ip (ENSSLDG00000006300)	igfbp2a (ENSSLDG00000006271)	igfbp5a (ENSSLDG00000006254)	ENSSLDG00000006240	ENSSLDG00000006146
Barramundi perch	MODERN SPECIES	179												COL8A1 (ENSLCAG00010014854)	FILIP1L (ENSLCAG00010014858)	ENSLCAG00010014867	ccdc28a (ENSLCAG00010014892)	ENSLCAG00010014899 ##22	ATP1A1 (ENSLCAG00010015946)	ENSLCAG00010020463	ENSLCAG00010020514	ENSLCAG00010020727	obsl1a (ENSLCAG00010020745)	CTDSP1 (ENSLCAG00010020750)	spega (ENSLCAG00010020806)	inha (ENSLCAG00010020928)	ENSLCAG00010020929	stk11ip (ENSLCAG00010020939)	igfbp2a (ENSLCAG00010020967)	igfbp5a (ENSLCAG00010020973)	ENSLCAG00010021034	ENSLCAG00010021140	ENSLCAG00010021145
Ovalentaria	ANCESTRAL SPECIES	23	ENSGT00940000178886	ENSGT01030000234635.a.b.a.b.a	ENSGT00940000159144.A.e.a	ENSGT00940000159144.A.f	ENSGT00940000175375	ENSGT00940000156877	ENSGT00390000013956	ENSGT01000000214434.B.a.b	ENSGT00940000153695.B	ENSGT00390000005596.a	ENSGT00940000158272.c.a	ENSGT00940000169105	ENSGT00950000182852.A.a.b.c	ENSGT00940000158839	ENSGT00500000044870.a	ENSGT00940000154790.a.a.a ##22	ENSGT00940000154840.b.f.c.a	ENSGT01090000260459	ENSGT00940000154840.b.f.c.b	ENSGT01100000263585	ENSGT00940000156702.a.b.b	ENSGT01040000240451.a.a.d	ENSGT00940000163418.D	ENSGT00940000177589	ENSGT00390000005935	ENSGT01090000260005.a.a.a.b.a.b.b	ENSGT00940000158471	ENSGT00940000158542.a	ENSGT00940000155890.a.b	ENSGT00940000176837	ENSGT00940000155400.A
Atherinomorphae	ANCESTRAL SPECIES	24	ENSGT00940000163254	ENSGT00530000063484.b.b.d.b	ENSGT00940000154342.C	ENSGT00940000159144.A.f	ENSGT00940000175375	ENSGT00940000156877	ENSGT00390000013956	ENSGT01000000214434.B.a.b	ENSGT00940000153695.B	ENSGT00390000005596.a	ENSGT00940000158272.c.a	ENSGT00940000169105	ENSGT00950000182852.A.a.b.c	ENSGT00940000158839	ENSGT00500000044870.a	ENSGT00940000154790.a.a.a ##22	ENSGT00940000154840.b.f.c.a	ENSGT01100000263585	ENSGT01090000260459	ENSGT00940000154840.b.f.c.b	ENSGT00940000156702.a.b.b	ENSGT01040000240451.a.a.d	ENSGT00940000163418.D	ENSGT00940000177589	ENSGT00940000161126	ENSGT00390000005935	ENSGT01090000260005.a.a.a.b.a.b.b	ENSGT00940000158471	ENSGT00940000158542.a	ENSGT00940000155890.a.b	ENSGT00940000155400.A
Oryzias	ANCESTRAL SPECIES	55											ENSGT00940000158272.c.a	ENSGT00940000169105	ENSGT00950000182852.A.a.b.c	ENSGT00940000158839	ENSGT00500000044870.a	ENSGT00940000154790.a.a.a ##22	ENSGT00940000154840.b.f.c.a	ENSGT00940000154840.b.f.c.b	ENSGT00940000156702.a.b.b	ENSGT01040000240451.a.a.d	ENSGT00940000163418.D	ENSGT00390000005935	ENSGT01090000260005.a.a.a.b.a.b.b	ENSGT00940000158471	ENSGT00940000158542.a	ENSGT00940000155890.a.b	ENSGT00940000155400.A	ENSGT00940000154453.a.b.a.a.b	ENSGT00940000157249	ENSGT00940000155408.o.b	ENSGT00940000155235.k.b
Oryzias_b	ANCESTRAL SPECIES	24	ENSGT00930000150950.b.c	ENSGT00940000153534.A	ENSGT00390000003758	ENSGT00940000159144.A.f	ENSGT00940000175375	ENSGT00940000156877	ENSGT00390000013956	ENSGT01000000214434.B.a.b	ENSGT00940000153695.B	ENSGT00390000005596.a	ENSGT00940000158839	ENSGT00950000182852.A.a.b.c	ENSGT00940000169105	ENSGT00940000158272.c.a	ENSGT00500000044870.a	ENSGT00940000154790.a.a.a ##22	ENSGT00940000154840.b.f.c.a	ENSGT00940000154840.b.f.c.b	ENSGT00940000156702.a.b.b	ENSGT01040000240451.a.a.d	ENSGT00940000163418.D	ENSGT00390000005935	ENSGT01090000260005.a.a.a.b.a.b.b	ENSGT00940000158471	ENSGT00940000158542.a	ENSGT00940000155890.a.b	ENSGT00940000155400.A	ENSGT00940000154453.a.b.a.a.b	ENSGT00940000157249	ENSGT00940000155408.o.b	ENSGT00940000155235.k.b
Indian medaka	MODERN SPECIES	20	SLAIN1 (ENSOMEG00000015080)	mrps9 (ENSOMEG00000015064)	pou3f3b (ENSOMEG00000015038)	MATN2 (ENSOMEG00000015004)	LAPTM4B (ENSOMEG00000014886)	ENSOMEG00000014858	ENSOMEG00000014819	ubr5 (ENSOMEG00000014794)	ncalda (ENSOMEG00000014721)	ENSOMEG00000000368	azin1a (ENSOMEG00000014684)	atp6v1c1a (ENSOMEG00000014607)	ENSOMEG00000014548	COL8A1 (ENSOMEG00000014510)	ccdc28a (ENSOMEG00000014477)	ENSOMEG00000014454 ##22	ENSOMEG00000014415	ATP1A1 (ENSOMEG00000014366)	obsl1a (ENSOMEG00000014266)	CTDSP1 (ENSOMEG00000014176)	ENSOMEG00000014156	ENSOMEG00000014144	ENSOMEG00000014128	ENSOMEG00000014099	inha (ENSOMEG00000014087)	ENSOMEG00000014072	stk11ip (ENSOMEG00000014048)	igfbp2a (ENSOMEG00000014012)	igfbp5a (ENSOMEG00000013983)	ENSOMEG00000013932	ENSOMEG00000013727
Javanese ricefish	MODERN SPECIES	11	ical1 (ENSOJAG00000013853)	wdr12 (ENSOJAG00000013804)	nop58 (ENSOJAG00000013730)	nufip1 (ENSOJAG00000013715)	ENSOJAG00000013694	ENSOJAG00000013662	MTRF1 (ENSOJAG00000013650)	ENSOJAG00000013637	ENSOJAG00000013175	jagn1b (ENSOJAG00000013151)	ENSOJAG00000013138	FILIP1L (ENSOJAG00000013129)	ENSOJAG00000013101	COL8A1 (ENSOJAG00000013092)	ccdc28a (ENSOJAG00000013081)	ENSOJAG00000013051 ##22	ENSOJAG00000013034	atp1a1a.2 (ENSOJAG00000012725)	obsl1a (ENSOJAG00000012480)	CTDSP1 (ENSOJAG00000012413)	inha (ENSOJAG00000011912)	ENSOJAG00000011828	stk11ip (ENSOJAG00000011798)	igfbp2a (ENSOJAG00000011789)	igfbp5a (ENSOJAG00000011783)	ENSOJAG00000010889	mettl21a (ENSOJAG00000010881)	CREB1 (ENSOJAG00000010805)	klf7a (ENSOJAG00000010793)	si:ch211-93g23.2 (ENSOJAG00000010785)	RAMP1 (ENSOJAG00000010777)
Oryzias_a	ANCESTRAL SPECIES	76	ENSGT00390000014376.c.b	ENSGT01030000235131	ENSGT00940000155773.a	ENSGT00390000017860.a.b.f	ENSGT00390000011204	ENSGT00940000164385.a.a.a.b	ENSGT00940000158398	ENSGT00390000003114.e.b.a	ENSGT00530000063607.b.j.b	ENSGT00390000002215.i.b	ENSGT00940000158272.c.a	ENSGT00940000169105	ENSGT00950000182852.A.a.b.c	ENSGT00940000158839	ENSGT00500000044870.a	ENSGT00940000154790.a.a.a ##22	ENSGT00940000154840.b.f.c.a	ENSGT00940000154840.b.f.c.b.e	ENSGT00940000156702.a.b.b	ENSGT01040000240451.a.a.d	ENSGT00940000163418.D	ENSGT00390000005935	ENSGT01090000260005.a.a.a.b.a.b.b	ENSGT00940000158471	ENSGT00940000158542.a	ENSGT00940000155890.a.b	ENSGT00940000155400.A	ENSGT00940000154453.a.b.a.a.b	ENSGT00940000157249	ENSGT00940000155408.o.b	ENSGT00940000155235.k.b
Chinese medaka	MODERN SPECIES	229	ENSOSIG00000000615	ENSOSIG00000000616	si:dkey-276j7.1 (ENSOSIG00000000617)	ENSOSIG00000000618	mrps9 (ENSOSIG00000000621)	pou3f3b (ENSOSIG00000001036)	OSBPL11 (ENSOSIG00000001053)	gpd1c (ENSOSIG00000003177)	NCKAP5 (ENSOSIG00000003206)	LYPD1 (ENSOSIG00000003228)	ACTR3 (ENSOSIG00000003238)	COL8A1 (ENSOSIG00000003281)	ENSOSIG00000003286	FILIP1L (ENSOSIG00000003291)	ccdc28a (ENSOSIG00000003296)	ENSOSIG00000003306 ##22	ATP1A1 (ENSOSIG00000003574)
Japanese Medaka HdrR	MODERN SPECIES	11	ENSORLG00000001869	ENSORLG00000001882	mrps9 (ENSORLG00000001896)	pou3f3b (ENSORLG00000001901)	ENSORLG00000023000	OSBPL11 (ENSORLG00000001914)	gpd1c (ENSORLG00000001939)	NCKAP5 (ENSORLG00000001953)	ENSORLG00000028132	ACTR3 (ENSORLG00000001964)	COL8A1 (ENSORLG00000001968)	ENSORLG00000001973	FILIP1L (ENSORLG00000001976)	ENSORLG00000024492	ccdc28a (ENSORLG00000026855)	prox1a (ENSORLG00000001996) ##22	ENSORLG00000027612	ATP1A1 (ENSORLG00000018557)	ENSORLG00000002047	obsl1a (ENSORLG00000002135)	CTDSP1 (ENSORLG00000002151)	spega (ENSORLG00000002177)	inha (ENSORLG00000002184)	ENSORLG00000002202	stk11ip (ENSORLG00000002225)	igfbp2a (ENSORLG00000022125)	igfbp5a (ENSORLG00000002243)	ENSORLG00000002301	ENSORLG00000022647	ENSORLG00000002319	mettl21a (ENSORLG00000002331)
Cyprinodontiformes	ANCESTRAL SPECIES	26		ENSGT00940000159144.A.e.a	ENSGT00390000005130	ENSGT00940000159144.A.f	ENSGT00940000175375	ENSGT00940000156877	ENSGT00390000013956	ENSGT01000000214434.B.a.b	ENSGT00940000153695.B	ENSGT00390000005596.a	ENSGT00940000158272.c.a	ENSGT00940000171777	ENSGT00950000182852.A.a.b.c	ENSGT00940000158839	ENSGT00500000044870.a	ENSGT00940000154790.a.a.a ##22	ENSGT00940000154840.b.f.c.a	ENSGT01100000263585	ENSGT01090000260459	ENSGT00940000154840.b.f.c.b	ENSGT00940000156702.a.b.b	ENSGT01040000240451.a.a.d	ENSGT00940000163418.D	ENSGT00940000177589	ENSGT00940000161126	ENSGT00390000005935	ENSGT01090000260005.a.a.a.b.a.b.b	ENSGT00940000158471	ENSGT00940000158542.a	ENSGT00940000155890.a.b	ENSGT00940000155400.A
Cyprinodontoidei	ANCESTRAL SPECIES	26			ENSGT00940000159144.A.e.a	ENSGT00390000005130	ENSGT00940000159144.A.f	ENSGT00940000175375	ENSGT00940000156877	ENSGT00390000013956	ENSGT01000000214434.B.a.b	ENSGT00940000153695.B	ENSGT00390000005596.a	ENSGT00940000158272.c.a	ENSGT00950000182852.A.a.b.c	ENSGT00940000158839	ENSGT00500000044870.a	ENSGT00940000154790.a.a.a ##22	ENSGT00940000154840.b.f.c.a	ENSGT01090000260459	ENSGT00940000154840.b.f.c.b	ENSGT00940000156702.a.b.b	ENSGT01040000240451.a.a.d	ENSGT00940000163418.D	ENSGT00940000177589	ENSGT00390000005935	ENSGT01090000260005.a.a.a.b.a.b.b	ENSGT00940000158471	ENSGT00940000158542.a	ENSGT00940000155890.a.b	ENSGT00940000155400.A	ENSGT00940000154453.a.b.a.a.b	ENSGT00940000157249
NAME_4	ANCESTRAL SPECIES	466													ENSGT00950000182852.A.a.b.c	ENSGT00940000158839	ENSGT00500000044870.a	ENSGT00940000154790.a.a.a ##22
Mummichog	MODERN SPECIES	562																ENSFHEG00000000504 ##22
Sheepshead minnow	MODERN SPECIES	844													FILIP1L (ENSCVAG00000005861)	ENSCVAG00000005888	ccdc28a (ENSCVAG00000005894)	ENSCVAG00000005927 ##22
Poeciliinae	ANCESTRAL SPECIES	23			ENSGT00940000159144.A.e.a	ENSGT00390000005130	ENSGT00940000159144.A.f	ENSGT00940000175375	ENSGT00940000156877	ENSGT00390000013956	ENSGT01000000214434.B.a.b	ENSGT00940000153695.B	ENSGT00390000005596.a	ENSGT00940000158272.c.a	ENSGT00950000182852.A.a.b.c	ENSGT00940000158839	ENSGT00500000044870.a	ENSGT00940000154790.a.a.a ##22	ENSGT00940000154840.b.f.c.a	ENSGT01090000260600	ENSGT00940000154840.b.f.c.b	ENSGT00940000156702.a.b.b	ENSGT01040000240451.a.a.d	ENSGT00940000163418.D	ENSGT00940000177589	ENSGT00390000005935	ENSGT01090000260005.a.a.a.b.a.b.b	ENSGT00940000158471	ENSGT00940000158542.a	ENSGT00940000155890.a.b	ENSGT00940000155400.A	ENSGT00940000154453.a.b.a.a.b	ENSGT00940000157249
Poecilia	ANCESTRAL SPECIES	45																ENSGT00940000154790.a.a.a ##22	ENSGT00940000154840.b.f.c.a	ENSGT01090000260600	ENSGT00940000154840.b.f.c.b	ENSGT00940000156702.a.b.b	ENSGT01040000240451.a.a.d	ENSGT00940000163418.D	ENSGT00940000177589	ENSGT00390000005935	ENSGT01090000260005.a.a.a.b.a.b.b	ENSGT00940000158471	ENSGT00940000158542.a	ENSGT00940000155890.a.b	ENSGT00940000155400.A	ENSGT00940000154453.a.b.a.a.b	ENSGT00940000157249
NAME_6	ANCESTRAL SPECIES	232																ENSGT00940000154790.a.a.a ##22	ENSGT00940000154840.b.f.c.a	ENSGT01090000260600	ENSGT00940000154840.b.f.c.b	ENSGT00940000156702.a.b.b	ENSGT01040000240451.a.a.d	ENSGT00940000163418.D	ENSGT00940000177589	ENSGT00390000005935	ENSGT01090000260005.a.a.a.b.a.b.b	ENSGT00940000158471	ENSGT00940000158542.a	ENSGT00940000155890.a.b	ENSGT00940000155400.A	ENSGT00940000154453.a.b.a.a.b	ENSGT00940000157249
Amazon molly	MODERN SPECIES	460																ENSPFOG00000015503 ##22	ENSPFOG00000015178	ATP1A1 (ENSPFOG00000014864)	obsl1a (ENSPFOG00000014777)	CTDSP1 (ENSPFOG00000014754)	spega (ENSPFOG00000014558)	inha (ENSPFOG00000014537)	ENSPFOG00000014526	stk11ip (ENSPFOG00000014410)	igfbp2a (ENSPFOG00000014380)	igfbp5a (ENSPFOG00000014348)	ENSPFOG00000014114	ENSPFOG00000014028	mettl21a (ENSPFOG00000014013)	CREB1 (ENSPFOG00000013920)	CREB1 (ENSPFOG00000023773)
Sailfin molly	MODERN SPECIES	1940													ENSPLAG00000009574	atp5mf (ENSPLAG00000009577)	cpsf4 (ENSPLAG00000009599)	ENSPLAG00000009625 ##22
Guppy	MODERN SPECIES	450	cryaa (ENSPREG00000017897)	ENSPREG00000017886	ENSPREG00000017872	ddx4 (ENSPREG00000017840)	UBE3A (ENSPREG00000017799)	CNGA3 (ENSPREG00000017756)	atp1b1b (ENSPREG00000017732)	ENSPREG00000017697	ENSPREG00000017679	SLC19A2 (ENSPREG00000017667)	atg3 (ENSPREG00000017638)	ENSPREG00000017622	ENSPREG00000017610	ENSPREG00000017596	ENSPREG00000017586	ENSPREG00000017519 ##22	ATP1A1 (ENSPREG00000017481)	ENSPREG00000017463	ENSPREG00000017415	obsl1a (ENSPREG00000017290)	CTDSP1 (ENSPREG00000017262)	ENSPREG00000017206	spega (ENSPREG00000017121)	inha (ENSPREG00000017100)	ENSPREG00000017092	ENSPREG00000017083	ENSPREG00000017069	igfbp2a (ENSPREG00000017056)	igfbp5a (ENSPREG00000017043)	ENSPREG00000016961	ENSPREG00000016919
Platyfish	MODERN SPECIES	16	ENSXMAG00000023949	ENSXMAG00000025376	ENSXMAG00000009847	ENSXMAG00000020169	ENSXMAG00000026199	ENSXMAG00000009852	ENSXMAG00000009853	ENSXMAG00000029739	ENSXMAG00000009878	ENSXMAG00000009933	jagn1b (ENSXMAG00000009941)	COL8A1 (ENSXMAG00000022370)	FILIP1L (ENSXMAG00000009955)	ENSXMAG00000009965	ccdc28a (ENSXMAG00000022750)	ENSXMAG00000009972 ##22	ATP1A1 (ENSXMAG00000008520)	ENSXMAG00000028735	ENSXMAG00000013209	obsl1a (ENSXMAG00000000533)	CTDSP1 (ENSXMAG00000000525)	spega (ENSXMAG00000000514)	inha (ENSXMAG00000000511)	ENSXMAG00000000509	stk11ip (ENSXMAG00000029049)	igfbp2a (ENSXMAG00000024734)	igfbp5a (ENSXMAG00000007799)	ENSXMAG00000007804	ENSXMAG00000021456	ENSXMAG00000029269	ENSXMAG00000027034
Aplocheiloidei	ANCESTRAL SPECIES	80											ENSGT00940000158272.c.a	ENSGT00940000171777	ENSGT00950000182852.A.a.b.c	ENSGT00940000158839	ENSGT00500000044870.a	ENSGT00940000154790.a.a.a ##22	ENSGT00940000154840.b.f.c.a	ENSGT01100000263585	ENSGT00940000154840.b.f.c.b	ENSGT00940000156702.a.b.b	ENSGT01040000240451.a.a.d	ENSGT00940000161126	ENSGT00390000005935	ENSGT01090000260005.a.a.a.b.a.b.b	ENSGT00940000158471	ENSGT00940000158542.a	ENSGT00940000155890.a.b	ENSGT00940000155400.A	ENSGT00940000154453.a.b.a.a.b	ENSGT00940000157249	ENSGT00940000155408.o.b
Turquoise killifish	MODERN SPECIES	1613	tmem237b (ENSNFUG00015000151)	ABI2B (ENSNFUG00015000290)	abi2b (ENSNFUG00015000506)	COL18A1 (ENSNFUG00015000608)	ENSNFUG00015000681	ENSNFUG00015000691	ENSNFUG00015000695	FHL2 (ENSNFUG00015000700)	PKP4 (ENSNFUG00015000923)	ENSNFUG00015001734	FILIP1L (ENSNFUG00015001737)	ENSNFUG00015001740	CCDC28A (ENSNFUG00015001769)	ENSNFUG00015001776	ENSNFUG00015001782	PROX1 (ENSNFUG00015001790) ##22	ENSNFUG00015001799	ATP1A1B (ENSNFUG00015001901)	ENSNFUG00015002186	ENSNFUG00015002189	obsl1a (ENSNFUG00015002229)	CTDSP1 (ENSNFUG00015002312)	ENSNFUG00015002370	inha (ENSNFUG00015002374)	OLA.20466 (ENSNFUG00015002378)	STK11IP (ENSNFUG00015002382)	IGFBP2A (ENSNFUG00015002390)	igfbp5a (ENSNFUG00015002393)	ENSNFUG00015002522	ENSNFUG00015003129	ENSNFUG00015003137
Mangrove rivulus	MODERN SPECIES	96										ENSKMAG00000002104	COL8A1 (ENSKMAG00000002289)	ENSKMAG00000002299	FILIP1L (ENSKMAG00000002312)	ENSKMAG00000002348	ccdc28a (ENSKMAG00000002405)	ENSKMAG00000002423 ##22	ATP1A1 (ENSKMAG00000002471)	ENSKMAG00000002529	obsl1a (ENSKMAG00000002614)	ENSKMAG00000002688	CTDSP1 (ENSKMAG00000002718)	ENSKMAG00000002805	inha (ENSKMAG00000002829)	ENSKMAG00000002850	stk11ip (ENSKMAG00000002880)	igfbp2a (ENSKMAG00000002915)	igfbp5a (ENSKMAG00000002961)	ENSKMAG00000003134	ENSKMAG00000003227	ENSKMAG00000003283	mettl21a (ENSKMAG00000003323)
Ovalentaria_B	ANCESTRAL SPECIES	22	ENSGT00940000178886	ENSGT01030000234635.a.b.a.b.a	ENSGT00940000163647	ENSGT00940000159144.A.e.a	ENSGT00940000175375	ENSGT00940000156877	ENSGT00390000013956	ENSGT01000000214434.B.a.b	ENSGT00940000153695.B	ENSGT00390000005596.a	ENSGT00940000154317.b	ENSGT00940000169105	ENSGT00950000182852.A.a.b.c	ENSGT00940000158839	ENSGT00500000044870.a	ENSGT00940000154790.a.a.a ##22	ENSGT00940000154840.b.f.c.a	ENSGT01100000263585	ENSGT00940000154840.b.f.c.b	ENSGT00940000156702.a.b.b	ENSGT01040000240451.a.a.d	ENSGT00940000163418.D	ENSGT00940000163418.A.a.b	ENSGT00940000177589	ENSGT00940000161126	ENSGT00390000005935	ENSGT01090000260005.a.a.a.b.a.b.b	ENSGT00940000158471	ENSGT00940000158542.a	ENSGT00940000155890.a.b	ENSGT00940000176837
Cichlidae	ANCESTRAL SPECIES	27	ENSGT00940000178886	ENSGT01030000234635.a.b.a.b.a	ENSGT00940000163647	ENSGT00940000175375	ENSGT00940000178584	ENSGT00940000156877	ENSGT00390000013956	ENSGT01000000214434.B.a.b	ENSGT00940000153695.B	ENSGT00390000005596.a	ENSGT00940000154317.b	ENSGT00940000169105	ENSGT00950000182852.A.a.b.c	ENSGT00940000158839	ENSGT00500000044870.a	ENSGT00940000154790.a.a.a ##22	ENSGT00940000154840.b.f.c.a	ENSGT01100000263585	ENSGT00940000154840.b.f.c.b.g	ENSGT00940000154840.b.f.c.b.h.a	ENSGT00940000154840.b.f.c.b.h.b	ENSGT00940000156702.a.b.b	ENSGT01040000240451.a.a.d	ENSGT00940000163418.D	ENSGT00390000005935	ENSGT01090000260005.a.a.a.b.a.b.b	ENSGT00940000158471	ENSGT00940000158542.a	ENSGT00940000155890.a.b	ENSGT00940000176837.b.a.b	ENSGT00940000177880
Pseudocrenilabrinae	ANCESTRAL SPECIES	10	ENSGT00940000178886	ENSGT01030000234635.a.b.a.b.a	ENSGT00940000163647	ENSGT00940000175375	ENSGT00940000178584	ENSGT00940000156877	ENSGT00390000013956	ENSGT01000000214434.B.a.b	ENSGT00940000153695.B	ENSGT00390000005596.a	ENSGT00940000154317.b	ENSGT00940000169105	ENSGT00950000182852.A.a.b.c	ENSGT00940000158839	ENSGT00500000044870.a	ENSGT00940000154790.a.a.a ##22	ENSGT01100000263585.l	ENSGT00940000154840.b.f.c.a	ENSGT01100000263585.k.b.a	ENSGT00940000154840.b.f.c.b.g	ENSGT01100000263585.k.b.b	ENSGT00940000154840.b.f.c.b.h.a	ENSGT01100000263585.k.a	ENSGT00940000154840.b.f.c.b.h.b	ENSGT00940000156702.a.b.b	ENSGT01040000240451.a.a.d	ENSGT00940000163418.D	ENSGT00940000158299.b	ENSGT00940000155861.C.e	ENSGT00940000156444.c	ENSGT00390000005159.j
Pseudocrenilabrinae_A	ANCESTRAL SPECIES	16	ENSGT00940000178886	ENSGT01030000234635.a.b.a.b.a	ENSGT00940000163647	ENSGT00940000175375	ENSGT00940000178584	ENSGT00940000156877	ENSGT00390000013956	ENSGT01000000214434.B.a.b	ENSGT00940000153695.B	ENSGT00390000005596.a	ENSGT00940000154317.b	ENSGT00940000169105	ENSGT00950000182852.A.a.b.c	ENSGT00940000158839	ENSGT00500000044870.a	ENSGT00940000154790.a.a.a ##22	ENSGT01100000263585.l	ENSGT00940000154840.b.f.c.a	ENSGT01100000263585.k.b.a	ENSGT00940000154840.b.f.c.b.g.a	ENSGT00940000154840.b.f.c.b.g.b	ENSGT01100000263585.k.b.b	ENSGT00940000154840.b.f.c.b.h.a	ENSGT01100000263585.k.a	ENSGT00940000154840.b.f.c.b.h.b	ENSGT00940000156702.a.b.b	ENSGT01040000240451.a.a.d	ENSGT00940000163418.D	ENSGT00940000158299.b	ENSGT00940000155861.C.e	ENSGT00940000156444.c
Haplochromini	ANCESTRAL SPECIES	38	ENSGT00390000010543.w.a.a.a	ENSGT01030000234635.a.b.a.b.a	ENSGT00940000163647	ENSGT00940000175375	ENSGT00940000178584	ENSGT00940000156877	ENSGT00390000013956	ENSGT01000000214434.B.a.b	ENSGT00940000153695.B	ENSGT00390000005596.a	ENSGT00940000154317.b	ENSGT00940000169105	ENSGT00950000182852.A.a.b.c	ENSGT00940000158839	ENSGT00500000044870.a	ENSGT00940000154790.a.a.a ##22	ENSGT01100000263585.l	ENSGT00940000154840.b.f.c.a	ENSGT01100000263585.k.b.a.b	ENSGT00940000154840.b.f.c.b.g.a	ENSGT01100000263585.k.b.a.a.b	ENSGT00940000154840.b.f.c.b.g.b	ENSGT01100000263585.k.b.b	ENSGT00940000154840.b.f.c.b.h.a	ENSGT01100000263585.k.a	ENSGT00940000154840.b.f.c.b.h.b	ENSGT00940000156702.a.b.b	ENSGT01040000240451.a.a.d	ENSGT00940000163418.D	ENSGT00940000163418.B	ENSGT00940000163418.A.a.b
Haplochromini_A	ANCESTRAL SPECIES	42	ENSGT01030000234635.a.b.a.b.a	ENSGT00940000163647	ENSGT00940000175375	ENSGT00940000178584	ENSGT00940000156877	ENSGT00390000013956	ENSGT01000000214434.B.a.b	ENSGT00940000153695.B	ENSGT00390000005596.a	ENSGT00940000154317.b	ENSGT00940000169105	ENSGT00950000182852.A.a.b.c	ENSGT00940000158839	ENSGT00500000044870.a	ENSGT00530000064692.B.b.b.d.a	ENSGT00940000154790.a.a.a ##22	ENSGT01100000263585.l	ENSGT00940000154840.b.f.c.a	ENSGT01100000263585.k.b.a.b	ENSGT00940000154840.b.f.c.b.g.a	ENSGT01100000263585.k.b.a.a.b	ENSGT00940000154840.b.f.c.b.g.b	ENSGT01100000263585.k.b.b	ENSGT00940000154840.b.f.c.b.h.a	ENSGT01100000263585.k.a	ENSGT00940000154840.b.f.c.b.h.b	ENSGT00940000156702.a.b.b	ENSGT01040000240451.a.a.d	ENSGT00940000163418.D	ENSGT00940000163418.B	ENSGT00940000163418.A.a.b
Haplochromini_B	ANCESTRAL SPECIES	48	ENSGT00390000010543.w.a.a.a	ENSGT01030000234635.a.b.a.b.a	ENSGT00940000163647	ENSGT00940000175375	ENSGT00940000156877	ENSGT00390000013956	ENSGT01000000214434.B.a.b	ENSGT00940000153695.B	ENSGT00390000005596.a	ENSGT00940000154317.b	ENSGT00940000169105	ENSGT00950000182852.A.a.b.c	ENSGT00940000158839	ENSGT00500000044870.a	ENSGT00530000064692.B.b.b.d.a.a	ENSGT00940000154790.a.a.a ##22	ENSGT01100000263585.l	ENSGT00940000154840.b.f.c.a	ENSGT01100000263585.k.b.a.b	ENSGT00940000154840.b.f.c.b.g.a	ENSGT00940000154840.b.f.c.b.g.b	ENSGT01100000263585.k.b.b	ENSGT00940000154840.b.f.c.b.h.a	ENSGT01100000263585.k.a	ENSGT00940000154840.b.f.c.b.h.b	ENSGT00940000156702.a.b.b	ENSGT01040000240451.a.a.d	ENSGT00940000163418.D	ENSGT00940000163418.B	ENSGT00940000163418.A.a.b	ENSGT00940000177589
Eastern happy	MODERN SPECIES	14	FARP1 (ENSACLG00000024105)	chn1 (ENSACLG00000024013)	ENSACLG00000024001	ENSACLG00000023974	MTRF1 (ENSACLG00000023945)	ENSACLG00000023922	ENSACLG00000023863	ENSACLG00000023823	jagn1b (ENSACLG00000023842)	ENSACLG00000023818	ENSACLG00000023781	FILIP1L (ENSACLG00000023767)	ENSACLG00000023736	ccdc28a (ENSACLG00000023727)	ENSACLG00000023720	ENSACLG00000023697 ##22	ENSACLG00000023651	ATP1A1 (ENSACLG00000023619)	ENSACLG00000023606	ENSACLG00000023544	ENSACLG00000023504	ENSACLG00000023491	ENSACLG00000023458	ENSACLG00000023442	ENSACLG00000016283	ENSACLG00000016079	obsl1a (ENSACLG00000016009)	CTDSP1 (ENSACLG00000015973)	spega (ENSACLG00000015860)	CHRNA2 (ENSACLG00000015825)	ALS2 (ENSACLG00000015714)
Zebra mbuna	MODERN SPECIES	1105	gart (ENSMZEG00005017801)	n6amt1 (ENSMZEG00005017792)	ENSMZEG00005017786	ENSMZEG00005017783	ENSMZEG00005017780	ENSMZEG00005017774	ENSMZEG00005017767	cbsa (ENSMZEG00005017757)	u2af1 (ENSMZEG00005017751)	zgc:172122 (ENSMZEG00005017744)	ENSMZEG00005017736	FILIP1L (ENSMZEG00005017728)	ENSMZEG00005017719	ccdc28a (ENSMZEG00005017709)	ENSMZEG00005017697	ENSMZEG00005017685 ##22	ATP1A1 (ENSMZEG00005017655)	ENSMZEG00005017652	ENSMZEG00005017648	ENSMZEG00005017639	ENSMZEG00005017626	ENSMZEG00005017620	ENSMZEG00005017609	ENSMZEG00005017608	ENSMZEG00005017594	obsl1a (ENSMZEG00005017536)	CTDSP1 (ENSMZEG00005017519)	ENSMZEG00005017512	ENSMZEG00005017509	ENSMZEG00005017505	CHRNA2 (ENSMZEG00005017497)
P. nyererei	MODERN SPECIES	540									ENSPNYG00000021622	jagn1b (ENSPNYG00000021643)	ENSPNYG00000021654	FILIP1L (ENSPNYG00000021666)	ENSPNYG00000021682	ccdc28a (ENSPNYG00000021713)	ENSPNYG00000021736	ENSPNYG00000021759 ##22	ATP1A1 (ENSPNYG00000021779)	ENSPNYG00000021807	ENSPNYG00000021826	ENSPNYG00000021840	ENSPNYG00000021858	ENSPNYG00000021866	ENSPNYG00000021881	ENSPNYG00000021892	obsl1a (ENSPNYG00000021916)	CTDSP1 (ENSPNYG00000021982)	spega (ENSPNYG00000022026)	CHRNA2 (ENSPNYG00000022083)
Burton s mouthbrooder	MODERN SPECIES	492					ENSHBUG00000020842	ENSHBUG00000020861	ENSHBUG00000000644	ENSHBUG00000020880	ENSHBUG00000020932	ENSHBUG00000020958	jagn1b (ENSHBUG00000020947)	ENSHBUG00000020967	FILIP1L (ENSHBUG00000020981)	ENSHBUG00000021030	ccdc28a (ENSHBUG00000021039)	ENSHBUG00000021064 ##22	ATP1A1 (ENSHBUG00000021121)	ENSHBUG00000021146	ENSHBUG00000021178	ENSHBUG00000021193	ENSHBUG00000021275	ENSHBUG00000000658	ENSHBUG00000021359	ENSHBUG00000021421	obsl1a (ENSHBUG00000021477)	CTDSP1 (ENSHBUG00000021545)	ENSHBUG00000021559	ENSHBUG00000021567	ENSHBUG00000021574	ENSHBUG00000021591	CHRNA2 (ENSHBUG00000021704)
Lyretail cichlid	MODERN SPECIES	315	arl13b (ENSNBRG00000004078)	FARP1 (ENSNBRG00000004166)	ENSNBRG00000004547	chn1 (ENSNBRG00000004568)	ENSNBRG00000004607	ENSNBRG00000004614	MTRF1 (ENSNBRG00000004634)	ENSNBRG00000004655	ENSNBRG00000004673	jagn1b (ENSNBRG00000004740)	COL8A1 (ENSNBRG00000004746)	ENSNBRG00000004754	FILIP1L (ENSNBRG00000004784)	ENSNBRG00000004805	ccdc28a (ENSNBRG00000004859)	ENSNBRG00000004876 ##22	ENSNBRG00000004895	ATP1A1 (ENSNBRG00000004921)	ENSNBRG00000004998	ENSNBRG00000005065	ENSNBRG00000005085	ENSNBRG00000005153	ATP1A1 (ENSNBRG00000005416)	ENSNBRG00000007930	ATP1A1 (ENSNBRG00000008877)	ENSNBRG00000013779	obsl1a (ENSNBRG00000013788)	CTDSP1 (ENSNBRG00000013840)	ENSNBRG00000013896	ENSNBRG00000013908	CHRNA2 (ENSNBRG00000013966)
Nile tilapia	MODERN SPECIES	14	ENSONIG00000020947	ENSONIG00000036956	ENSONIG00000040495	ENSONIG00000038222	ENSONIG00000040072	ENSONIG00000033858	ENSONIG00000042299	ENSONIG00000032249	ENSONIG00000043206	jagn1b (ENSONIG00000040771)	ENSONIG00000012472	ENSONIG00000012471	FILIP1L (ENSONIG00000012470)	ENSONIG00000012469	ccdc28a (ENSONIG00000012468)	ENSONIG00000012467 ##22	ATP1A1 (ENSONIG00000012456)	ENSONIG00000036775	ENSONIG00000042153	ENSONIG00000032416	ENSONIG00000035563	ENSONIG00000012358	obsl1a (ENSONIG00000027470)	CTDSP1 (ENSONIG00000012356)	spega (ENSONIG00000012351)	CHRNA2 (ENSONIG00000012349)	ALS2 (ENSONIG00000027435)	MPP4 (ENSONIG00000032396)	tmem237b (ENSONIG00000012346)	cyp20a1 (ENSONIG00000012336)	abi2b (ENSONIG00000012331)
Midas cichlid	MODERN SPECIES	971				ENSACIG00000001459	ENSACIG00000001473	ENSACIG00000001488	MTRF1 (ENSACIG00000001495)	ENSACIG00000001515	ENSACIG00000001551	jagn1b (ENSACIG00000001599)	COL8A1 (ENSACIG00000001609)	ENSACIG00000001621	FILIP1L (ENSACIG00000001638)	ENSACIG00000001652	ccdc28a (ENSACIG00000001700)	ENSACIG00000001713 ##22	ENSACIG00000001741	ATP1A1 (ENSACIG00000001788)	ENSACIG00000001836	ENSACIG00000001848	ENSACIG00000001901	ENSACIG00000001965	ENSACIG00000002015	obsl1a (ENSACIG00000002022)	CTDSP1 (ENSACIG00000002070)	spega (ENSACIG00000002119)	inha (ENSACIG00000002528)	ENSACIG00000002543	ENSACIG00000002626	igfbp2a (ENSACIG00000002653)	igfbp5a (ENSACIG00000002677)
Pomacentridae	ANCESTRAL SPECIES	111	ENSGT01030000234570.d.a.p	ENSGT00940000157652	ENSGT00940000156597.a.b.a	ENSGT00640000091496	ENSGT00390000011204	ENSGT00940000164385.a.a.a.b	ENSGT00940000158398	ENSGT00390000003114.e.b.a	ENSGT00530000063607.b.j.b	ENSGT00390000002215.i.b	ENSGT00940000155065.xb.b	ENSGT00940000154317.b	ENSGT00950000182852.A.a.b.c	ENSGT00940000158839	ENSGT00500000044870.a	ENSGT00940000154790.a.a.a ##22	ENSGT00940000154840.b.f.c.a	ENSGT01100000263585	ENSGT00940000154840.b.f.c.b	ENSGT00940000156702.a.b.b	ENSGT01040000240451.a.a.d	ENSGT00940000163418.D	ENSGT00390000005935
Pomacentridae_A	ANCESTRAL SPECIES	115	ENSGT00530000063186.b.b	ENSGT01030000234570.d.a.p	ENSGT00940000157652	ENSGT00940000156597.a.b.a	ENSGT00640000091496	ENSGT00390000011204	ENSGT00940000164385.a.a.a.b	ENSGT00940000158398	ENSGT00390000003114.e.b.a	ENSGT00530000063607.b.j.b	ENSGT00390000002215.i.b	ENSGT00940000155065.xb.b	ENSGT00950000182852.A.a.b.c	ENSGT00940000158839	ENSGT00500000044870.a	ENSGT00940000154790.a.a.a ##22	ENSGT00940000154840.b.f.c.a	ENSGT01100000263585.h	ENSGT00940000154840.b.f.c.b	ENSGT01100000263585.g	ENSGT00940000156702.a.b.b	ENSGT01040000240451.a.a.d	ENSGT00940000163418.D	ENSGT00390000005935
Amphiprion	ANCESTRAL SPECIES	135	ENSGT00530000063186.b.b	ENSGT01030000234570.d.a.p	ENSGT00940000157652	ENSGT00940000156597.a.b.a	ENSGT00640000091496	ENSGT00390000011204	ENSGT00940000164385.a.a.a.b	ENSGT00940000158398	ENSGT00390000003114.e.b.a	ENSGT00530000063607.b.j.b	ENSGT00390000002215.i.b	ENSGT00940000155065.xb.b	ENSGT00950000182852.A.a.b.c	ENSGT00940000158839	ENSGT00500000044870.a	ENSGT00940000154790.a.a.a ##22	ENSGT00940000154840.b.f.c.a	ENSGT01100000263585.h	ENSGT00940000154840.b.f.c.b	ENSGT01100000263585.g	ENSGT00940000156702.a.b.b	ENSGT01040000240451.a.a.d	ENSGT00940000163418.D	ENSGT00390000005935
Clown anemonefish	MODERN SPECIES	598													FILIP1L (ENSAOCG00000021107)	ENSAOCG00000021086	ccdc28a (ENSAOCG00000021060)	ENSAOCG00000021046 ##22	ATP1A1 (ENSAOCG00000020990)	ENSAOCG00000020904	ENSAOCG00000020893	ENSAOCG00000020818	obsl1a (ENSAOCG00000020800)	CTDSP1 (ENSAOCG00000001528)	spega (ENSAOCG00000020690)	inha (ENSAOCG00000020577)	NCAM2 (ENSAOCG00000020562)	ENSAOCG00000020505
Orange clownfish	MODERN SPECIES	16	mylz3 (ENSAPEG00000012988)	acadl (ENSAPEG00000013016)	ENSAPEG00000013075	UNC80 (ENSAPEG00000013145)	mrps9 (ENSAPEG00000013413)	pou3f3b (ENSAPEG00000013456)	OSBPL11 (ENSAPEG00000013486)	gpd1c (ENSAPEG00000013535)	NCKAP5 (ENSAPEG00000013630)	LYPD1 (ENSAPEG00000013659)	actr3 (ENSAPEG00000013673)	FILIP1L (ENSAPEG00000013770)	ENSAPEG00000013789	ENSAPEG00000013811	ccdc28a (ENSAPEG00000013881)	ENSAPEG00000013974 ##22	ATP1A1 (ENSAPEG00000014030)	ENSAPEG00000014118	ENSAPEG00000014141	obsl1a (ENSAPEG00000014228)	CTDSP1 (ENSAPEG00000014300)	spega (ENSAPEG00000014333)	inha (ENSAPEG00000014437)	ENSAPEG00000014463	NCAM2 (ENSAPEG00000014541)	arl13b (ENSAPEG00000014654)	ggact.3 (ENSAPEG00000014676)	FARP1 (ENSAPEG00000014702)	ENSAPEG00000014824	ENSAPEG00000014844	ENSAPEG00000014854
Spiny chromis	MODERN SPECIES	1756																ENSAPOG00000012539 ##22
Bicolor damselfish	MODERN SPECIES	584					inha (ENSSPAG00000007175)	CTDSP1 (ENSSPAG00000007192)	ENSSPAG00000007241	ENSSPAG00000007254	ENSSPAG00000007272	ATP1A1 (ENSSPAG00000007326)	ENSSPAG00000007374	FILIP1L (ENSSPAG00000007387)	ENSSPAG00000007417	ENSSPAG00000007429	ccdc28a (ENSSPAG00000007443)	ENSSPAG00000007455 ##22	obsl1a (ENSSPAG00000007485)	ENSSPAG00000007531
Tiger tail seahorse	MODERN SPECIES	487	zgc:77375 (ENSHCOG00000003467)	cnbpa (ENSHCOG00000003457)	raf1a (ENSHCOG00000003447)	syn2a (ENSHCOG00000003422)	VGLL4 (ENSHCOG00000003393)	slc6a1a (ENSHCOG00000003383)	ENSHCOG00000003365	DUSP7 (ENSHCOG00000003353)	mrps9 (ENSHCOG00000003338)	ENSHCOG00000003331	jagn1b (ENSHCOG00000003324)	ENSHCOG00000003317	FILIP1L (ENSHCOG00000000101)	ENSHCOG00000003278	ccdc28a (ENSHCOG00000003252)	ENSHCOG00000003239 ##22	ATP1A1 (ENSHCOG00000003216)	ENSHCOG00000003177	ENSHCOG00000003146	obsl1a (ENSHCOG00000003139)	CTDSP1 (ENSHCOG00000003099)	ENSHCOG00000003082	ENSHCOG00000003065	ENSHCOG00000003056	ENSHCOG00000003049	igfbp2a (ENSHCOG00000003034)	igfbp5a (ENSHCOG00000003030)	ENSHCOG00000003013	ENSHCOG00000002953	ENSHCOG00000000837
Pinecone sodierfish	MODERN SPECIES	11	FARP1 (ENSMMDG00005006372)	chn1 (ENSMMDG00005006516)	ENSMMDG00005006891	ENSMMDG00005006894	ENSMMDG00005006895	ENSMMDG00005006897	ENSMMDG00005006907	ENSMMDG00005007497	jagn1b (ENSMMDG00005007646)	ENSMMDG00005007647	ENSMMDG00005007649	ENSMMDG00005007651	FILIP1L (ENSMMDG00005007656)	ENSMMDG00005007661	ccdc28a (ENSMMDG00005007667)	ENSMMDG00005007670 ##22	atp1a1a.2 (ENSMMDG00005007789)	ENSMMDG00005015403	ENSMMDG00005015409	ENSMMDG00005015423	ENSMMDG00005015466	HECW2 (ENSMMDG00005000161)	gtf3c3 (ENSMMDG00005000464)	dmd (ENSMMDG00005000976)	ENSMMDG00005003335	tmem47 (ENSMMDG00005003341)	ENSMMDG00005003343	nop58 (ENSMMDG00005003349)	wdr12 (ENSMMDG00005003362)	ical1 (ENSMMDG00005003365)	ENSMMDG00005003369
Cod	MODERN SPECIES	20	ENSGMOG00000031496	ENSGMOG00000033640	ENSGMOG00000022981	ENSGMOG00000024483	ENSGMOG00000030081	ENSGMOG00000022324	ENSGMOG00000025286	ENSGMOG00000033347	ENSGMOG00000023909	ENSGMOG00000029019	ENSGMOG00000028453	ENSGMOG00000027805	ENSGMOG00000027197	ENSGMOG00000034082	ENSGMOG00000033630	ENSGMOG00000027579 ##22	ENSGMOG00000027911	ENSGMOG00000005261	ENSGMOG00000007889	ENSGMOG00000034046	ENSGMOG00000032832	ENSGMOG00000027854	ENSGMOG00000022842	ENSGMOG00000005104	ENSGMOG00000023264	ENSGMOG00000014088	ENSGMOG00000026707	ENSGMOG00000019125	ENSGMOG00000023186	ENSGMOG00000032400	ENSGMOG00000036807
Protacanthopterygii	ANCESTRAL SPECIES	185	ENSGT00940000157269.a.b	ENSGT00940000160303.a.b	ENSGT00940000154607.a	ENSGT00510000048137	ENSGT00940000159969.b.a.b	ENSGT00940000156557.g	ENSGT00940000164041.b.b	ENSGT00390000016811.g	ENSGT00390000016811.h	ENSGT00390000002143.b.a	ENSGT00940000157133	ENSGT00940000166718	ENSGT00950000183114.a.a	ENSGT00940000158839	ENSGT00500000044870.a	ENSGT00940000154790.a.a.a ##22
Salmoninae	DUPLICATION
Salmoninae	ANCESTRAL SPECIES																	ENSGT00940000154790.a.a.a.a ##22
Salmoninae_a	ANCESTRAL SPECIES																	ENSGT00940000154790.a.a.a.a ##22
Oncorhynchus	ANCESTRAL SPECIES																	ENSGT00940000154790.a.a.a.a ##22
Rainbow trout	MODERN SPECIES	10	ENSOMYG00000014422	ENSOMYG00000014436	plaat1l (ENSOMYG00000051314)	ephx2 (ENSOMYG00000014450)	chrna2a (ENSOMYG00000076962)	ENSOMYG00000059755	ENSOMYG00000014470	ENSOMYG00000076781	ENSOMYG00000014480	ENSOMYG00000069239	pomca (ENSOMYG00000014502)	ENSOMYG00000055861	dnajc27 (ENSOMYG00000074771)	ENSOMYG00000074973	ENSOMYG00000050729	ENSOMYG00000069829 ##22	ENSOMYG00000073579	ENSOMYG00000050549	ENSOMYG00000072445	ENSOMYG00000077313	ENSOMYG00000014544	ENSOMYG00000073971	trim9 (ENSOMYG00000024311)	pygl (ENSOMYG00000014642)	ENSOMYG00000015041	NIN (ENSOMYG00000015170)	sav1 (ENSOMYG00000015163)	atl1 (ENSOMYG00000015151)	map4k5 (ENSOMYG00000064573)	ENSOMYG00000065168	cdkl1 (ENSOMYG00000015126)
Salmo	ANCESTRAL SPECIES																	ENSGT00940000154790.a.a.a.a ##22
Atlantic salmon	MODERN SPECIES		ENSSSAG00000121022	plaat1l (ENSSSAG00000035519)	ephx2 (ENSSSAG00000035097)	chrna2a (ENSSSAG00000037181)	ENSSSAG00000115052	ENSSSAG00000034575	ENSSSAG00000120676	ENSSSAG00000034886	alkal2b (ENSSSAG00000034188)	ENSSSAG00000036357	pomca (ENSSSAG00000070765)	ENSSSAG00000070629	dnajc27 (ENSSSAG00000112028)	ENSSSAG00000106554	ENSSSAG00000039639	ENSSSAG00000083748 ##22	ENSSSAG00000116603	ENSSSAG00000107292	ENSSSAG00000058229	trim9 (ENSSSAG00000104684)	pygl (ENSSSAG00000036264)	ENSSSAG00000093779	NIN (ENSSSAG00000053915)	ENSSSAG00000092315	sav1 (ENSSSAG00000053919)	atl1 (ENSSSAG00000053952)	map4k5 (ENSSSAG00000055072)	cdkl1 (ENSSSAG00000099783)	dmac2l (ENSSSAG00000056816)	l2hgdh (ENSSSAG00000056846)	ENSSSAG00000108437
Huchen	MODERN SPECIES	3206											ENSHHUG00000016901	sqstm1 (ENSHHUG00000016894)	ENSHHUG00000016891	TBC1D9B (ENSHHUG00000016764)	ENSHHUG00000016746	ENSHHUG00000016742 ##22	ENSHHUG00000016731 #23
Salmoninae	DUPLICATION
Salmoninae	DUPLICATION
Salmoninae	ANCESTRAL SPECIES																	ENSGT00940000154790.a.a.a.b.a.a ##22
Huchen	MODERN SPECIES	8513																ENSHHUG00000008167 ##22
Salmoninae_a	ANCESTRAL SPECIES																	ENSGT00940000154790.a.a.a.b.a.a ##22
Oncorhynchus	ANCESTRAL SPECIES																	ENSGT00940000154790.a.a.a.b.a.a ##22
Oncorhynchus_a	ANCESTRAL SPECIES																	ENSGT00940000154790.a.a.a.b.a.a ##22
Chinook salmon	MODERN SPECIES	3	fbl (ENSOTSG00005032874)	dyrk1b (ENSOTSG00005032878)	zp3d.1 (ENSOTSG00005032880)	ENSOTSG00005032883	ALDH2 (ENSOTSG00005032898)	ENSOTSG00005035327	fzd6 (ENSOTSG00005035329)	CTHRC1 (ENSOTSG00005035331)	slc25a32b (ENSOTSG00005035334)	ENSOTSG00005035335	ENSOTSG00005035336	bves (ENSOTSG00005035337)	ENSOTSG00005035340	HACE1 (ENSOTSG00005035347)	ENSOTSG00005036761	ENSOTSG00005036762 ##22	cemip2 (ENSOTSG00005036765)	abhd17b (ENSOTSG00005037076)	zgc:101016 (ENSOTSG00005037077)	gda (ENSOTSG00005037078)	si:ch211-214j8.12 (ENSOTSG00005037293)	zfand5a (ENSOTSG00005037294)	TMC1 (ENSOTSG00005037295)	tmc2b (ENSOTSG00005037296)	ALDH1A1 (ENSOTSG00005037297)	ENSOTSG00005037304	anxa1a (ENSOTSG00005037311)	anxa1a (ENSOTSG00005037341)	MFSD3 (ENSOTSG00005037457)	rorb (ENSOTSG00005037461)	ENSOTSG00005037467
Salmoninae	ANCESTRAL SPECIES																	ENSGT00940000154790.a.a.a.b.a.b ##22
Salmoninae_a	ANCESTRAL SPECIES																	ENSGT00940000154790.a.a.a.b.a.b ##22
Oncorhynchus	ANCESTRAL SPECIES																	ENSGT00940000154790.a.a.a.b.a.b ##22
Oncorhynchus_a	ANCESTRAL SPECIES																	ENSGT00940000154790.a.a.a.b.a.b ##22
Coho salmon	MODERN SPECIES	27	plaat1l (ENSOKIG00005002266)	ephx2 (ENSOKIG00005002318)	chrna2a (ENSOKIG00005002385)	ENSOKIG00005002431	ENSOKIG00005002463	ENSOKIG00005002478	SH3YL1 (ENSOKIG00005002486)	ENSOKIG00005002497	ENSOKIG00005002507	pomca (ENSOKIG00005002514)	EFR3B (ENSOKIG00005002729)	ENSOKIG00005003693	dnajc27 (ENSOKIG00005003701)	ENSOKIG00005003712	XDH (ENSOKIG00005004002)	ENSOKIG00005009434 ##22	trim9 (ENSOKIG00005009443)	pygl (ENSOKIG00005009568)	ENSOKIG00005010464	NIN (ENSOKIG00005010479)	sav1 (ENSOKIG00005010521)	atl1 (ENSOKIG00005010550)	map4k5 (ENSOKIG00005011002)	cdkl1 (ENSOKIG00005014097)	ENSOKIG00005014118	dmac2l (ENSOKIG00005014127)	l2hgdh (ENSOKIG00005014142)	sos2 (ENSOKIG00005014205)	cdkn3 (ENSOKIG00005014503)	cnih1 (ENSOKIG00005014515)	gmfb (ENSOKIG00005014523)
Salmo	ANCESTRAL SPECIES																	ENSGT00940000154790.a.a.a.b.a.b ##22
River trout	MODERN SPECIES	42																ENSSTUG00000035308 ##22
Huchen	MODERN SPECIES	7862																ENSHHUG00000020660 ##22
Salmoninae	ANCESTRAL SPECIES	337		ENSGT00940000158687.a.b.f	ENSGT00940000156634.b.h.a	ENSGT00940000158614.k	ENSGT00940000160303.a.b	ENSGT00940000154607.a.c	ENSGT00510000048137.j	ENSGT00940000162505.b.f	ENSGT00940000156557.g	ENSGT00940000164041.b.b	ENSGT00390000016811.g.f	ENSGT00940000157133.f	ENSGT00940000166718.d	ENSGT00940000158839	ENSGT00500000044870.a	ENSGT00940000154790.a.a.a.b.b ##22	ENSGT00940000154071.A.h.a	ENSGT00950000183148.a.a.a	ENSGT00660000095541.a.b.c.b	ENSGT00940000156106.g	ENSGT00940000158704.e	ENSGT00940000158072.g	ENSGT00940000158324.f.a	ENSGT00950000182834.A.a.a.d.b	ENSGT00940000157224.ab	ENSGT00830000128402	ENSGT00940000164487.e	ENSGT00940000164884.d	ENSGT00950000183209.b.b.i	ENSGT00950000182900.A.b.j	ENSGT00940000155548.sb.b.a
Salmoninae_a	ANCESTRAL SPECIES	8	ENSGT00940000158614.k	ENSGT00940000160303.a.b	ENSGT00940000154607.a.c	ENSGT00510000048137.j	ENSGT00940000162505.b.f	ENSGT00940000175756.a	ENSGT00950000182963.a.a.c	ENSGT00940000156557.g	ENSGT00940000164041.b.b	ENSGT00390000016811.g.f	ENSGT00940000157133.f	ENSGT00940000166718.d	ENSGT01030000234555.a.b.f.b	ENSGT00940000158839	ENSGT00500000044870.a	ENSGT00940000154790.a.a.a.b.b ##22	ENSGT00940000154071.A.h.a	ENSGT00950000183148.a.a.a	ENSGT00660000095541.a.b.c.b	ENSGT00940000156106.g	ENSGT00940000158704.e	ENSGT00940000158072.g	ENSGT00940000158324.f.a	ENSGT00950000182834.A.a.a.d.b	ENSGT00940000157224.ab	ENSGT00830000128402.a.b	ENSGT00940000164487.e	ENSGT00940000164884.d	ENSGT00950000183209.b.b.i	ENSGT00950000182900.A.b.j	ENSGT00940000155548.sb.b.a
Salmo	ANCESTRAL SPECIES	11	ENSGT00940000158614.k	ENSGT00940000160303.a.b	ENSGT00940000154607.a.c	ENSGT00510000048137.j	ENSGT00940000162505.b.f	ENSGT00940000175756.a	ENSGT00950000182963.a.a.c	ENSGT00940000156557.g	ENSGT00940000164041.b.b	ENSGT00390000016811.g.f	ENSGT00940000157133.f	ENSGT00940000166718.d	ENSGT01030000234555.a.b.f.b	ENSGT00940000158839	ENSGT00500000044870.a	ENSGT00940000154790.a.a.a.b.b ##22	ENSGT00940000154071.A.h.a	ENSGT00950000183148.a.a.a	ENSGT00660000095541.a.b.c.b	ENSGT00940000156106.g	ENSGT00940000158704.e	ENSGT00940000158072.g	ENSGT00940000158324.f.b.a	ENSGT00950000182834.A.a.a.d.b	ENSGT00940000157224.ab	ENSGT00830000128402.a.b	ENSGT00940000164487.e	ENSGT00940000164884.d	ENSGT00950000183209.b.b.i	ENSGT00950000182900.A.b.j	ENSGT00940000155548.sb.b.a
Atlantic salmon	MODERN SPECIES	28	ENSSSAG00000107339	ENSSSAG00000004933	ENSSSAG00000004919	ENSSSAG00000113067	alkal2b (ENSSSAG00000114050)	ENSSSAG00000095726	ENSSSAG00000108119	snx9a (ENSSSAG00000070769)	ENSSSAG00000083622	pomca (ENSSSAG00000095078)	dnajc27 (ENSSSAG00000118648)	ENSSSAG00000004795	ENSSSAG00000095109	ENSSSAG00000064209	ccdc28a (ENSSSAG00000064213)	ENSSSAG00000104417 ##22	ENSSSAG00000095709 #23	trim9 (ENSSSAG00000034367)	pygl (ENSSSAG00000049653)	NIN (ENSSSAG00000118026)	sav1 (ENSSSAG00000103444)	atl1 (ENSSSAG00000049174)	map4k5 (ENSSSAG00000040875)	ENSSSAG00000099814	ENSSSAG00000039308	ENSSSAG00000082438	cnih1 (ENSSSAG00000042132)	lgals3a (ENSSSAG00000010091)	synj2bp (ENSSSAG00000092630)	ENSSSAG00000049835	srsf5a (ENSSSAG00000049847)
Oncorhynchus	ANCESTRAL SPECIES	54	ENSGT00940000158614.k	ENSGT00940000160303.a.b	ENSGT00940000154607.a.c	ENSGT00510000048137.j	ENSGT00940000162505.b.f	ENSGT00940000175756.a	ENSGT00950000182963.a.a.c	ENSGT00940000156557.g	ENSGT00940000164041.b.b	ENSGT00390000016811.g.f	ENSGT00940000157133.f	ENSGT00940000166718.c.a.a	ENSGT01030000234555.a.b.f.b	ENSGT00940000158839	ENSGT00500000044870.a	ENSGT00940000154790.a.a.a.b.b ##22	ENSGT00940000154071.A.h.a	ENSGT00950000183148.a.a.a	ENSGT00660000095541.a.b.c.b	ENSGT00940000156106.g	ENSGT00940000158704.e	ENSGT00940000158072.g	ENSGT00940000158324.f.a	ENSGT00950000182834.A.a.a.d.b
Oncorhynchus_a	ANCESTRAL SPECIES	60	ENSGT00940000158687.a.b.f	ENSGT00940000156634.b.h.a	ENSGT00940000158614.k	ENSGT00940000160303.a.b	ENSGT00940000154607.a.c	ENSGT00510000048137.j	ENSGT00940000162505.b.f	ENSGT00940000156557.g	ENSGT00940000164041.b.b	ENSGT00390000016811.g.f	ENSGT00940000157133.f	ENSGT00940000166718.c.a.a	ENSGT01030000234555.a.b.f.b	ENSGT00940000158839	ENSGT00500000044870.a	ENSGT00940000154790.a.a.a.b.b ##22	ENSGT00940000154071.A.h.a	ENSGT00950000183148.a.a.a	ENSGT00660000095541.a.b.c.b	ENSGT00940000156106.g	ENSGT00940000158704.e	ENSGT00940000158072.g
Coho salmon	MODERN SPECIES	5	ENSOKIG00005008735	ENSOKIG00005008701	ENSOKIG00005008695	ENSOKIG00005008667	ENSOKIG00005008491	ENSOKIG00005008438	alkal2b (ENSOKIG00005008431)	ENSOKIG00005008427	snx9a (ENSOKIG00005008030)	ENSOKIG00005007988	pomca (ENSOKIG00005007948)	dnajc27 (ENSOKIG00005007784)	ENSOKIG00005007655	ENSOKIG00005007627	ENSOKIG00005007618	ENSOKIG00005007607 ##22	ENSOKIG00005007596	SMYD2 (ENSOKIG00005007510) #23	trim9 (ENSOKIG00005007454)	pygl (ENSOKIG00005004611)	ENSOKIG00005004181	NIN (ENSOKIG00005014194)	sav1 (ENSOKIG00005014189)	atl1 (ENSOKIG00005014178)	map4k5 (ENSOKIG00005011988)	ENSOKIG00005011742	cnih1 (ENSOKIG00005011694)	ENSOKIG00005011658	ENSOKIG00005011635	lgals3a (ENSOKIG00005011609)	synj2bp (ENSOKIG00005011594)
Rainbow trout	MODERN SPECIES	17	ENSOMYG00000030527	ENSOMYG00000068475	ENSOMYG00000024116	ENSOMYG00000060170	ENSOMYG00000077839	ENSOMYG00000052264	snx9a (ENSOMYG00000073053)	ENSOMYG00000057712	pomca (ENSOMYG00000048731)	dnajc27 (ENSOMYG00000049044)	ENSOMYG00000072083	ENSOMYG00000065975	ENSOMYG00000066811	ENSOMYG00000030619	ENSOMYG00000051910	ENSOMYG00000030565 ##22	ENSOMYG00000024326 #23	pygl (ENSOMYG00000024285)	NIN (ENSOMYG00000057487)	ENSOMYG00000074814	sav1 (ENSOMYG00000024232)	atl1 (ENSOMYG00000024221)	map4k5 (ENSOMYG00000052517)	ENSOMYG00000049088	cnih1 (ENSOMYG00000024376)	ENSOMYG00000058861	lgals3a (ENSOMYG00000024419)	ENSOMYG00000053875	ENSOMYG00000024446	srsf5a (ENSOMYG00000024465)	pacs2 (ENSOMYG00000024483)
Northern pike	MODERN SPECIES	14	ENSELUG00000026497	snx9a (ENSELUG00000018211)	ENSELUG00000018221	pomca (ENSELUG00000018258)	EFR3B (ENSELUG00000018320)	ENSELUG00000019174	dnajc27 (ENSELUG00000019264)	ENSELUG00000019292	XDH (ENSELUG00000019382)	ENSELUG00000029307	ENSELUG00000029959	ENSELUG00000019414	ENSELUG00000019487	ccdc28a (ENSELUG00000019504)	ENSELUG00000026820	ENSELUG00000031575 ##22	smyd2a (ENSELUG00000019543) #23	ENSELUG00000027863	ENSELUG00000019555	ENSELUG00000019571	ENSELUG00000026521	trim9 (ENSELUG00000019700)	pygl (ENSELUG00000019760)	ENSELUG00000019932	sav1 (ENSELUG00000034215)	sav1 (ENSELUG00000019971)	atl1 (ENSELUG00000020010)	map4k5 (ENSELUG00000020074)	cdkl1 (ENSELUG00000020093)	dmac2l (ENSELUG00000000887)	l2hgdh (ENSELUG00000020151)
Reedfish	MODERN SPECIES	6	ints7 (ENSECRG00000014961) #7	dtl (ENSECRG00000014895) #8	PPP2R5A (ENSECRG00000014821) #9	pacc1 (ENSECRG00000014790) #10	nenf (ENSECRG00000014763) #11	atf3 (ENSECRG00000014748) #12	batf3 (ENSECRG00000014732) #13	NSL1 (ENSECRG00000014702) #14	TATDN3 (ENSECRG00000014664) #15	tatdn3 (ENSECRG00000014581) ##15	ENSECRG00000014549	flvcr1 (ENSECRG00000014534) #17	VASH2 (ENSECRG00000014477) #18	angel2 (ENSECRG00000014385) #19	rps6kc1 (ENSECRG00000014298) #21	ENSECRG00000014262 ##22	smyd2a (ENSECRG00000014114) #23	PTPN14 (ENSECRG00000014069) #24	CENPF (ENSECRG00000013988) ##25	kcnk2b (ENSECRG00000013744) #26	KCTD3 (ENSECRG00000013663) #27	esrrga (ENSECRG00000013623) #29	spata17 (ENSECRG00000013607) #31	TCTE1 (ENSECRG00000013587)	extl3 (ENSECRG00000013569)	ENSECRG00000013556	ppm1g (ENSECRG00000013535)	rrp15 (ENSECRG00000013510) #32	plek (ENSECRG00000013475)
Cyclostomata	ANCESTRAL SPECIES																	ENSGT00940000154790.a.a #22
Hagfish	MODERN SPECIES	767							ENSEBUG00000007450	ENSEBUG00000009465	babam2 (ENSEBUG00000016182)	ENSEBUG00000011051	ENSEBUG00000007756	ENSEBUG00000009413 #15	ENSEBUG00000013173	ENSEBUG00000013008 ##17	ENSEBUG00000003413	prox1a (ENSEBUG00000002067) #22	ENSEBUG00000009276	ENSEBUG00000000570	ENSEBUG00000009112	tgfb2 (ENSEBUG00000010851) #33	RRP15 (ENSEBUG00000011777) #32	ENSEBUG00000007405	ENSEBUG00000012523
Lamprey	MODERN SPECIES	3331																ENSPMAG00000006606 #22
Vertebrata	ANCESTRAL SPECIES																	ENSGT00940000154790.a.b ##22
Gnathostomata	ANCESTRAL SPECIES																	ENSGT00940000154790.a.b ##22
Euteleostomi	ANCESTRAL SPECIES	699														ENSGT00940000157941	ENSGT00940000160125	ENSGT00940000154790.a.b ##22	ENSGT01030000234598.b.b
Actinopterygii	ANCESTRAL SPECIES	630														ENSGT00940000157941	ENSGT00940000160125	ENSGT00940000154790.a.b ##22	ENSGT01030000234598.b.b
Neopterygii	ANCESTRAL SPECIES	46	ENSGT00730000111179.a	ENSGT00390000009379	ENSGT01060000249679	ENSGT00940000164137	ENSGT00940000160539	ENSGT00950000182985.b.b	ENSGT00940000157074	ENSGT00940000165651	ENSGT00900000141164	ENSGT00940000164681	ENSGT00390000018613.b	ENSGT00390000007071	ENSGT00940000164878	ENSGT00940000157941	ENSGT00940000160125	ENSGT00940000154790.a.b ##22	ENSGT01030000234598.b.b	ENSGT00940000159086	ENSGT00490000043395	ENSGT00730000110989	ENSGT00940000155771	ENSGT00390000015930	ENSGT00440000039046	ENSGT00940000166823	ENSGT00940000163574	ENSGT00940000154290.b	ENSGT00530000063681.b.a	ENSGT00390000012355.A.a	ENSGT00940000165661	ENSGT00550000074949	ENSGT00940000155679
Osteoglossocephalai	ANCESTRAL SPECIES	54	ENSGT00390000007971	ENSGT00940000164916	ENSGT00940000167292	ENSGT00940000164137.a	ENSGT00940000160539	ENSGT00950000182985.b.b	ENSGT00940000157074	ENSGT00940000165651.a	ENSGT00900000141164.q.a	ENSGT00950000182980.a.b.b.a.b.b	ENSGT00900000141164.r	ENSGT00940000165651.b	ENSGT00900000141164.q.b	ENSGT00940000156646.c	ENSGT00940000160125	ENSGT00940000154790.a.b ##22	ENSGT00510000048151.a	ENSGT00510000048151.b	ENSGT00770000120838.A	ENSGT00390000013762.a.e	ENSGT00390000013762.a.f	ENSGT00390000005498	ENSGT00940000165739	ENSGT00950000183000.c.a.a	ENSGT00390000012589	ENSGT00940000164137.b	ENSGT00940000156646.d	ENSGT00390000015815.h	ENSGT00940000159437.d	ENSGT00530000064165.a.c	ENSGT00550000075103
Clupeocephala	ANCESTRAL SPECIES	65	ENSGT00940000167292.a	ENSGT00940000164137.a	ENSGT00940000160539	ENSGT00950000182985.b.b.sc	ENSGT00940000157074	ENSGT00940000165651.a	ENSGT00900000141164.q.a	ENSGT00950000182980.a.b.b.a.b.b	ENSGT00940000166868.b	ENSGT00940000166331	ENSGT00940000165651.b	ENSGT00900000141164.r.b	ENSGT00940000160303.a.a	ENSGT00940000156646.c	ENSGT00940000160125	ENSGT00940000154790.a.b ##22	ENSGT00510000048151.a	ENSGT00390000013762.a.f	ENSGT00390000005498	ENSGT00940000165739	ENSGT00940000165127.b	ENSGT00950000182924.A.a	ENSGT00390000015415	ENSGT01060000253480	ENSGT00940000160134	ENSGT00940000155384.b.b	ENSGT00390000002849	ENSGT00390000006227	ENSGT00550000075058	ENSGT00940000176904	ENSGT01030000234590.B.a.b
Otomorpha	ANCESTRAL SPECIES	43	ENSGT00550000074832	ENSGT00940000164137.a	ENSGT00940000160539	ENSGT00950000182985.b.b.sc	ENSGT00940000157074	ENSGT00940000165651.a	ENSGT00900000141164.q.a	ENSGT00950000182980.a.b.b.a.b.b.b	ENSGT00940000166331	ENSGT00940000165651.b	ENSGT00900000141164.q.b	ENSGT00900000141164.r.b	ENSGT00940000160303.a.a	ENSGT00940000156646.c	ENSGT00940000160125	ENSGT00940000154790.a.b ##22	ENSGT00510000048151.a	ENSGT00390000013762.a.f	ENSGT00390000005498	ENSGT00940000165739	ENSGT00940000165127.b	ENSGT00950000182924.A.a	ENSGT00390000015415	ENSGT00940000153322.A	ENSGT01060000248840	ENSGT00530000063506.B	ENSGT00940000160134	ENSGT00940000155384.b.b	ENSGT00390000002849	ENSGT00390000006227
Clupeiformes	ANCESTRAL SPECIES	45	ENSGT00390000005656	ENSGT00940000155980.A	ENSGT00510000047418	ENSGT00390000017284.a.b.c	ENSGT00940000159032.e	ENSGT00550000074832	ENSGT00940000164137.a	ENSGT00940000160539	ENSGT00950000182985.b.b.rc.a	ENSGT00940000166331	ENSGT00940000165651.b	ENSGT00900000141164.r.b	ENSGT00940000160303.a.a	ENSGT00940000156646.c	ENSGT00940000160125	ENSGT00940000154790.a.b ##22	ENSGT00510000048151.a	ENSGT00940000166947	ENSGT00940000166766	ENSGT00940000164342	ENSGT00400000022326.a	ENSGT00390000018596.A.a.b	ENSGT00950000182893.a.b.e.a	ENSGT00940000159574	ENSGT00940000165806	ENSGT00940000158278.e.a
Atlantic herring	MODERN SPECIES	9	SEMA4F (ENSCHAG00000006416)	m1ap (ENSCHAG00000006387)	dok1b (ENSCHAG00000006381)	nagk (ENSCHAG00000006241)	ENSCHAG00000006224	hspa12b (ENSCHAG00000006026)	cct7 (ENSCHAG00000005923)	slc8a4b (ENSCHAG00000005644)	plcb3 (ENSCHAG00000002669)	ppp1r14bb (ENSCHAG00000026240)	brms1 (ENSCHAG00000026236)	ENSCHAG00000026228	PC (ENSCHAG00000026054)	slc3a2a (ENSCHAG00000026017)	snx15 (ENSCHAG00000026008)	prox3 (ENSCHAG00000026003) ##22	tmem179ba (ENSCHAG00000026001)	ENSCHAG00000025997	krcp (ENSCHAG00000025984)	dhrs4 (ENSCHAG00000025969)	tinf2 (ENSCHAG00000025958)	cideb (ENSCHAG00000025952)	homezb (ENSCHAG00000025946)	gmpr2 (ENSCHAG00000025901)	ENSCHAG00000025889	slc7a8a (ENSCHAG00000025805)	SVEP1 (ENSCHAG00000025368)	TXN (ENSCHAG00000025301)	ENSCHAG00000025259	FHDC1 (ENSCHAG00000025253)	ENSCHAG00000025250
Denticle herring	MODERN SPECIES		ENSDCDG00000010828	SVEP1 (ENSDCDG00000007861)	PAIP2B (ENSDCDG00000007717)	hspa12b (ENSDCDG00000006882)	ENSDCDG00000006702	cct7 (ENSDCDG00000005448)	slc8a4b (ENSDCDG00000005433)	plcb3 (ENSDCDG00000002719)	PPP1R14B (ENSDCDG00000002648)	brms1 (ENSDCDG00000002645)	ENSDCDG00000002643	pcxb (ENSDCDG00000002624)	ENSDCDG00000002614	slc3a2a (ENSDCDG00000002612)	snx15 (ENSDCDG00000002610)	prox3 (ENSDCDG00000002606) ##22	tmem179ba (ENSDCDG00000002604)	tmem179ba (ENSDCDG00000002603)	ENSDCDG00000002602	krcp (ENSDCDG00000002600)	dhrs4 (ENSDCDG00000002590)	tinf2 (ENSDCDG00000002585)	cideb (ENSDCDG00000002583)	homezb (ENSDCDG00000002580)	gmpr2 (ENSDCDG00000002577)	ENSDCDG00000002572	slc7a8a (ENSDCDG00000002524)	ENSDCDG00000002513	ENSDCDG00000002511	nat16l (ENSDCDG00000002509)	nagk (ENSDCDG00000002496)
Otophysi	ANCESTRAL SPECIES	280															ENSGT00940000160125	ENSGT00940000154790.a.b ##22	ENSGT00510000048151.a	ENSGT00390000013762.a.f	ENSGT00390000005498	ENSGT00940000165739	ENSGT00940000165127.b	ENSGT00950000182924.A.a	ENSGT00390000015415	ENSGT00940000153322.A	ENSGT01060000248840	ENSGT00510000050415.C.m.a	ENSGT00990000204286.b	ENSGT01040000240385.A.b.b.b.a.a.a.c.b	ENSGT00940000162428.n	ENSGT00530000063506.B	ENSGT00940000160134
Characiphysae	ANCESTRAL SPECIES	19	ENSGT00940000167107	ENSGT00940000156646.c	ENSGT00940000160303.a.a	ENSGT00940000163503.A.a.a.a	ENSGT00650000094881	ENSGT00800000125278	ENSGT00950000183121.a.c.b	ENSGT00510000050706	ENSGT00940000158001	ENSGT00440000037582	ENSGT00940000165987	ENSGT00940000165100.b.f	ENSGT00390000000592	ENSGT00940000163503.A.a.a.b	ENSGT00940000160125	ENSGT00940000154790.a.b ##22	ENSGT00510000048151.a	ENSGT00390000013762.a.f	ENSGT00390000005498	ENSGT00940000165739	ENSGT00940000165127.b	ENSGT00950000182924.A.a	ENSGT00390000015415	ENSGT00940000153322.A	ENSGT00510000050415.C.m.a	ENSGT00990000204286.b	ENSGT01040000240385.A.b.b.b.a.a.a.c.b	ENSGT00940000162428.n	ENSGT00530000063506.B	ENSGT00940000160134	ENSGT00940000155384.b.b
Channel catfish	MODERN SPECIES	26	ENSIPUG00000003458	zgc:103586 (ENSIPUG00000003442)	slc3a2a (ENSIPUG00000003434)	ENSIPUG00000003422	ENSIPUG00000003392	ENSIPUG00000003373	ENSIPUG00000003369	sat2a.2 (ENSIPUG00000003340)	tnfsf12 (ENSIPUG00000003318)	CHD3 (ENSIPUG00000003271)	cyb5d1 (ENSIPUG00000003237)	DNAJC3 (ENSIPUG00000003204)	cldn15a (ENSIPUG00000003172)	fis1 (ENSIPUG00000003157)	snx15 (ENSIPUG00000003125)	Prox1 (ENSIPUG00000003082) ##22	tmem179ba (ENSIPUG00000003057)	ENSIPUG00000003038	mus81 (ENSIPUG00000002988)	ovol1a (ENSIPUG00000002983)	ENSIPUG00000002952	tkfc (ENSIPUG00000002906)	ENSIPUG00000002885	zgc:194655 (ENSIPUG00000002873)	ENSIPUG00000002867	ENSIPUG00000002752	ENSIPUG00000002721	ENSIPUG00000002715	zgc:194655 (ENSIPUG00000002701)	CASP1 (ENSIPUG00000002683)	oxa1l (ENSIPUG00000002671)
Characiphysae_b	ANCESTRAL SPECIES	18	ENSGT00940000167107	ENSGT00940000156646.c	ENSGT00940000160303.a.a	ENSGT00940000163503.A.a.a.a	ENSGT00650000094881	ENSGT00800000125278	ENSGT00950000183121.a.c.b	ENSGT00510000050706	ENSGT00940000158001	ENSGT00440000037582	ENSGT00940000165987	ENSGT00940000165100.b.f	ENSGT00390000000592	ENSGT00940000163503.A.a.a.b	ENSGT00940000160125	ENSGT00940000154790.a.b ##22	ENSGT00510000048151.a	ENSGT00390000013762.a.f	ENSGT00390000005498	ENSGT00940000165739	ENSGT00940000165127.b	ENSGT00950000182924.A.a	ENSGT00390000015415	ENSGT00940000153322.A	ENSGT00510000050415.C.m.a	ENSGT00990000204286.b	ENSGT01040000240385.A.b.b.b.a.a.a.c.b	ENSGT00940000162428.n	ENSGT00530000063506.B	ENSGT00940000160134	ENSGT00940000155384.b.b
Electric eel	MODERN SPECIES	212	ENSEEEG00000000043	bmp15 (ENSEEEG00000000048)	leap2 (ENSEEEG00000000052)	PHKA1 (ENSEEEG00000000277)	ENSEEEG00000000436	zgc:103586 (ENSEEEG00000000528)	slc3a2a (ENSEEEG00000000533)	ENSEEEG00000000541	tnfsf12 (ENSEEEG00000000546)	CHD3 (ENSEEEG00000000857)	cyb5d1 (ENSEEEG00000002159)	dnajc3b (ENSEEEG00000002160)	cldn15a (ENSEEEG00000002175)	fis1 (ENSEEEG00000002177)	snx15 (ENSEEEG00000002178)	prox3 (ENSEEEG00000002180) ##22	tmem179ba (ENSEEEG00000002184)	ENSEEEG00000002185
Characoidei	ANCESTRAL SPECIES	9	ENSGT00940000156646.c	ENSGT00940000160303.a.a	ENSGT00940000163503.A.a.a.a	ENSGT00650000094881	ENSGT00800000125278	ENSGT00950000183121.a.c.b	ENSGT00510000050706	ENSGT00940000158001.d	ENSGT00440000037582	ENSGT00940000165987	ENSGT00940000165100.b.f	ENSGT00390000000592	ENSGT00940000163503.A.a.a.b	ENSGT01030000234571.b.b.a.a.b.e.b.b	ENSGT00940000160125	ENSGT00940000154790.a.b ##22	ENSGT00510000048151.a	ENSGT01100000263473.a.b.g.a.a.a.a.a	ENSGT00390000013762.a.f	ENSGT00390000005498	ENSGT00940000165739	ENSGT00940000165127.b	ENSGT00950000182924.A.a	ENSGT00390000015415	ENSGT00940000153322.A	ENSGT00510000050415.C.m.a	ENSGT00990000204286.b	ENSGT01040000240385.A.b.b.b.a.a.a.c.b	ENSGT00940000162428.n	ENSGT00530000063506.B	ENSGT00940000160134
Red-bellied piranha	MODERN SPECIES	162	ENSPNAG00000020008	zgc:103586 (ENSPNAG00000020031)	slc3a2a (ENSPNAG00000020047)	ENSPNAG00000003622	ENSPNAG00000020121	ENSPNAG00000020127	ENSPNAG00000020137	sat2a.2 (ENSPNAG00000020140)	tnfsf12 (ENSPNAG00000020154)	CHD3 (ENSPNAG00000020393)	cyb5d1 (ENSPNAG00000020426)	dnajc3b (ENSPNAG00000020466)	cldn15a (ENSPNAG00000020488)	fis1 (ENSPNAG00000020514)	snx15 (ENSPNAG00000020521)	prox3 (ENSPNAG00000020537) ##22	tmem179ba (ENSPNAG00000020549)	ENSPNAG00000020562	ENSPNAG00000020575	ENSPNAG00000020591	ENSPNAG00000020604	ENSPNAG00000020611	mus81 (ENSPNAG00000020624)	ovol1a (ENSPNAG00000020630)	ENSPNAG00000003655	ENSPNAG00000020685	tkfc (ENSPNAG00000020704)	ENSPNAG00000020736	ENSPNAG00000020769	zgc:194655 (ENSPNAG00000020776)	ENSPNAG00000020784
Mexicana tetra	MODERN SPECIES	7	ENSAMXG00000035926	ENSAMXG00000011226	ENSAMXG00000041951	ENSAMXG00000036445	sat2a.2 (ENSAMXG00000035614)	tnfsf12 (ENSAMXG00000011202)	ENSAMXG00000039461	ENSAMXG00000034545	ENSAMXG00000031495	ENSAMXG00000042432	cyb5d1 (ENSAMXG00000030430)	dnajc3b (ENSAMXG00000011158)	cldn15a (ENSAMXG00000011143)	fis1 (ENSAMXG00000038004)	snx15 (ENSAMXG00000011125)	prox3 (ENSAMXG00000011110) ##22	tmem179ba (ENSAMXG00000037067)	ENSAMXG00000042729	ENSAMXG00000038240	ENSAMXG00000011101	ENSAMXG00000011085	ENSAMXG00000011076	mus81 (ENSAMXG00000011060)	ovol1a (ENSAMXG00000011046)	ENSAMXG00000011037	ENSAMXG00000011030	tkfc (ENSAMXG00000011018)	ENSAMXG00000011007	ENSAMXG00000043567	zgc:194655 (ENSAMXG00000035609)	ENSAMXG00000031152
Cyprinoidei	ANCESTRAL SPECIES	14	ENSGT00940000163927.a.a	ENSGT01100000263613	ENSGT00940000158535	ENSGT00950000182903.a.b.i	ENSGT00940000174877	ENSGT00730000112287	ENSGT00940000166370	ENSGT00940000161071	ENSGT00940000160289	ENSGT00940000159372	ENSGT00940000159844	ENSGT00940000156022.a	ENSGT00940000154273.b	ENSGT01090000260185	ENSGT00940000160125	ENSGT00940000154790.a.b ##22	ENSGT00510000048151.a	ENSGT00390000013762.a.f	ENSGT00390000005498	ENSGT00940000165739	ENSGT00940000165127.b	ENSGT00950000182924.A.a	ENSGT00390000015415	ENSGT00940000153322.A	ENSGT01060000248840	ENSGT00510000050415.C.m.a	ENSGT00990000204286.b	ENSGT01100000263538.A.b.c.b	ENSGT01040000240385.A.b.b.b.a.a.a.c.b	ENSGT00940000162428.n.a	ENSGT00530000063506.B
Cyprininae	DUPLICATION
Cyprininae	ANCESTRAL SPECIES	70	ENSGT00940000166316.a	ENSGT00940000153491.b.b.b.a	ENSGT00940000163927.a.a.bb	ENSGT01100000263613.f	ENSGT00940000158535.ab	ENSGT00950000182903.a.b.i.i	ENSGT00730000112287.a	ENSGT00940000166370.d	ENSGT00940000161071.e	ENSGT00940000160289.j	ENSGT00940000159372.e	ENSGT00940000159844.e	ENSGT00940000156022.a	ENSGT00940000154273.b.f	ENSGT00940000160125.l	ENSGT00940000154790.a.b.a ##22	ENSGT00510000048151.a.d	ENSGT00390000013762.a.f.b	ENSGT00390000005498.a	ENSGT00940000165739.f.b	ENSGT00940000165127.b.a	ENSGT00950000182924.A.a.d	ENSGT00390000015415.b	ENSGT00940000153322.A.gb	ENSGT01060000248840	ENSGT00510000050415.C.m.a.d	ENSGT00990000204286.b.a.a	ENSGT01040000240385.A.b.b.b.a.a.a.c.b.c	ENSGT00940000162428.n.a.b	ENSGT00530000063506.B.n	ENSGT00940000160134.j
Cyprininae_a	ANCESTRAL SPECIES	183	ENSGT00390000014072.B.e	ENSGT00940000166316.a	ENSGT00940000153491.b.b.b.a	ENSGT00940000163927.a.a.bb	ENSGT01100000263613.f	ENSGT00940000158535.ab	ENSGT00950000182903.a.b.i.i	ENSGT00730000112287.a	ENSGT00940000166370.d	ENSGT00940000161071.e	ENSGT00940000160289.j	ENSGT00940000159372.e	ENSGT00940000159844.e	ENSGT00940000154273.b.f	ENSGT00940000160125.l	ENSGT00940000154790.a.b.a ##22	ENSGT00510000048151.a.d	ENSGT00390000013762.a.f.b	ENSGT00390000005498.a	ENSGT00940000165739.f.b	ENSGT00940000165127.b.a	ENSGT00950000182924.A.a.d	ENSGT00390000015415.b	ENSGT00940000153322.A.gb	ENSGT01040000240385.A.b.b.b.a.a.a.c.b.c	ENSGT00940000162428.n.a.b	ENSGT00530000063506.B.n	ENSGT00940000160134.j	ENSGT00940000155384.b.b.a	ENSGT00390000002849.e	ENSGT00390000006227.a
Golden-line barbel	MODERN SPECIES	226	ENSSGRG00000001307	ENSSGRG00000001529	ponzr1 (ENSSGRG00000001531)	ENSSGRG00000001532	dvl2 (ENSSGRG00000001541)	si:ch73-335l21.4 (ENSSGRG00000001719)	ENSSGRG00000001721	agfg2 (ENSSGRG00000001723)	acap1 (ENSSGRG00000001728)	SLC16A13 (ENSSGRG00000001878)	BCL6B (ENSSGRG00000001879)	ENSSGRG00000001881	ENSSGRG00000001883	ENSSGRG00000001884	snx15 (ENSSGRG00000001886)	prox3 (ENSSGRG00000001887) ##22	tmem179ba (ENSSGRG00000001889)	ENSSGRG00000001891	mus81 (ENSSGRG00000001892)	ovol1a (ENSSGRG00000001893)	ENSSGRG00000001894	ENSSGRG00000001896	tkfc (ENSSGRG00000001897)	ENSSGRG00000001898	zgc:194655 (ENSSGRG00000001899)
Common carp reference	MODERN SPECIES		cnpy4 (ENSCCRG00000054790)	ENSCCRG00000051467	ENSCCRG00000024980	ponzr1 (ENSCCRG00000057472)	ENSCCRG00000060260	acadvl (ENSCCRG00000059681)	dvl2 (ENSCCRG00000031042)	ENSCCRG00000023812	ENSCCRG00000066390	agfg2 (ENSCCRG00000058070)	acap1 (ENSCCRG00000055599)	ENSCCRG00000073841	ENSCCRG00000040056	ENSCCRG00000047066	snx15 (ENSCCRG00000082844)	prox3 (ENSCCRG00000075683) ##22	ENSCCRG00000067345	mus81 (ENSCCRG00000028738)	ENSCCRG00000028745	ENSCCRG00000028749	ENSCCRG00000077923	ENSCCRG00000072781	casp23 (ENSCCRG00000061202)	oxa1l (ENSCCRG00000072896)	slc7a7 (ENSCCRG00000033143)	ENSCCRG00000002417	ENSCCRG00000080499	ttc5 (ENSCCRG00000002385)	ENSCCRG00000077816	si:ch211-212k18.8 (ENSCCRG00000033033)	ENSCCRG00000044139
Goldfish	MODERN SPECIES	47	ENSCARG00000069146	ENSCARG00000069129	ponzr1 (ENSCARG00000069121)	ENSCARG00000069113	acadvl (ENSCARG00000068888)	dvl2 (ENSCARG00000068817)	si:ch73-335l21.2 (ENSCARG00000068802)	si:ch73-335l21.4 (ENSCARG00000068794)	ENSCARG00000068783	agfg2 (ENSCARG00000068769)	acap1 (ENSCARG00000068552)	SLC16A13 (ENSCARG00000068491)	BCL6B (ENSCARG00000068480)	ENSCARG00000068468	snx15 (ENSCARG00000068447)	prox3 (ENSCARG00000068431) ##22	tmem179ba (ENSCARG00000068422)	ENSCARG00000068397	ENSCARG00000068333	ovol1a (ENSCARG00000068326)	ENSCARG00000068323	ENSCARG00000068294	ENSCARG00000068270	ENSCARG00000068245	ENSCARG00000068215	zgc:194655 (ENSCARG00000068207)	ENSCARG00000068186	casp23 (ENSCARG00000068141)	oxa1l (ENSCARG00000068110)	slc7a7 (ENSCARG00000067988)	ENSCARG00000067933
Cyprininae	ANCESTRAL SPECIES	1	ENSGT00940000153491.b.b.b.b	ENSGT00940000163927.a.a.cb	ENSGT01100000263613.e	ENSGT00940000158535.`b	ENSGT00950000182903.a.b.i.j	ENSGT00940000174877	ENSGT00730000112287.b	ENSGT00940000166370.c	ENSGT00940000161071.f	ENSGT00940000160289.i	ENSGT00940000159372.f	ENSGT00940000159844.f	ENSGT00940000154273.b.e	ENSGT01090000260185	ENSGT00940000160125.k	ENSGT00940000154790.a.b.b ##22	ENSGT00510000048151.a.c	ENSGT00390000013762.a.f.a	ENSGT00390000005498.b	ENSGT00940000165739.f.a	ENSGT00940000165127.b.b	ENSGT00950000182924.A.a.c	ENSGT00390000015415.a	ENSGT00940000153322.A.fb	ENSGT00510000050415.C.m.a.c	ENSGT00990000204286.b.a.b	ENSGT00940000162428.n.a.a	ENSGT00530000063506.B.m	ENSGT00940000160134.i	ENSGT00940000155384.b.b.b	ENSGT00390000002849.f
Cyprininae_a	ANCESTRAL SPECIES	56	ENSGT00940000153491.b.b.b.b	ENSGT00940000163927.a.a.cb	ENSGT01100000263613.e	ENSGT00940000158535.`b	ENSGT00950000182903.a.b.i.j	ENSGT00940000174877	ENSGT00730000112287.b	ENSGT00940000166370.c	ENSGT00940000161071.f	ENSGT00940000160289.i	ENSGT00940000159372.f	ENSGT00940000159844.f	ENSGT00940000156022.a	ENSGT00940000154273.b.e	ENSGT00940000160125.k	ENSGT00940000154790.a.b.b ##22	ENSGT00510000048151.a.c	ENSGT00390000013762.a.f.a	ENSGT00390000005498.b	ENSGT00940000165739.f.a	ENSGT00940000165127.b.b	ENSGT00950000182924.A.a.c	ENSGT00390000015415.a	ENSGT00940000153322.A.fb	ENSGT00510000050415.C.m.a.c	ENSGT00990000204286.b.b	ENSGT01100000263538.A.b.c.b	ENSGT01040000240385.A.b.b.b.a.a.a.c.b.d	ENSGT00940000162428.n.a.a	ENSGT00530000063506.B.m	ENSGT00940000160134.i
Common carp reference	MODERN SPECIES	6	ENSCCRG00000066145	ENSCCRG00000021610	ponzr1 (ENSCCRG00000081415)	ENSCCRG00000021604	acadvl (ENSCCRG00000054675)	dvl2 (ENSCCRG00000021583)	si:ch73-335l21.2 (ENSCCRG00000079520)	si:ch73-335l21.4 (ENSCCRG00000082199)	ENSCCRG00000034175	agfg2 (ENSCCRG00000028440)	acap1 (ENSCCRG00000067284)	ENSCCRG00000040049	ENSCCRG00000028478	ENSCCRG00000028488	snx15 (ENSCCRG00000057490)	prox3 (ENSCCRG00000052974) ##22	si:ch211-285j22.3 (ENSCCRG00000081031)	mus81 (ENSCCRG00000028513)	ovol1a (ENSCCRG00000070411)	ENSCCRG00000057527	ENSCCRG00000077729	tkfc (ENSCCRG00000028527)	ENSCCRG00000028540	ENSCCRG00000080363	zgc:194655 (ENSCCRG00000028554)	ENSCCRG00000054572	ENSCCRG00000028558	casp23 (ENSCCRG00000028563)	oxa1l (ENSCCRG00000028571)	ENSCCRG00000054717	ENSCCRG00000033133
Golden-line barbel	MODERN SPECIES	199	ENSSGRG00000045602	ENSSGRG00000045659	ponzr1 (ENSSGRG00000045661)	ENSSGRG00000045663	acadvl (ENSSGRG00000045698)	dvl2 (ENSSGRG00000046435)	si:ch73-335l21.2 (ENSSGRG00000046437)	si:ch73-335l21.4 (ENSSGRG00000046438)	ENSSGRG00000046440	agfg2 (ENSSGRG00000046442)	acap1 (ENSSGRG00000046443)	SLC16A13 (ENSSGRG00000046446)	BCL6B (ENSSGRG00000046447)	ENSSGRG00000046448	snx15 (ENSSGRG00000046449)	prox3 (ENSSGRG00000046450) ##22	tmem179ba (ENSSGRG00000046452)	TMEM151A (ENSSGRG00000046453)	mus81 (ENSSGRG00000046454)	ovol1a (ENSSGRG00000046457)	ENSSGRG00000046458	ENSSGRG00000046460	tkfc (ENSSGRG00000046461)
Goldfish	MODERN SPECIES	25	ENSCARG00000058100	ENSCARG00000058113	ponzr1 (ENSCARG00000058134)	ENSCARG00000058156	acadvl (ENSCARG00000058232)	dvl2 (ENSCARG00000061847)	si:ch73-335l21.4 (ENSCARG00000062152)	ENSCARG00000062164	agfg2 (ENSCARG00000062191)	acap1 (ENSCARG00000062266)	SLC16A13 (ENSCARG00000062339)	BCL6B (ENSCARG00000062355)	ENSCARG00000062371	ENSCARG00000062379	snx15 (ENSCARG00000062393)	prox3 (ENSCARG00000062406) ##22	tmem179ba (ENSCARG00000062422)	TMEM151A (ENSCARG00000062450)	mus81 (ENSCARG00000062463)	ovol1a (ENSCARG00000062511)	ENSCARG00000062528	ENSCARG00000062588	tkfc (ENSCARG00000062623)	ENSCARG00000062677	ENSCARG00000062729	zgc:194655 (ENSCARG00000062757)	casp23 (ENSCARG00000062764)	oxa1l (ENSCARG00000062789)	slc7a7 (ENSCARG00000062928)	ENSCARG00000063286	CCNB1IP1 (ENSCARG00000063313)
Zebrafish	MODERN SPECIES	22	ENSDARG00000036420	ponzr1 (ENSDARG00000090444)	ENSDARG00000077414	acadvl (ENSDARG00000016687)	dvl2 (ENSDARG00000056184)	si:ch73-335l21.2 (ENSDARG00000105617)	ENSDARG00000105541	si:ch73-335l21.4 (ENSDARG00000091234)	ENSDARG00000036414	agfg2 (ENSDARG00000069334)	acap1 (ENSDARG00000056346)	SLC16A13 (ENSDARG00000055342)	BCL6B (ENSDARG00000069335)	ENSDARG00000069331	snx15 (ENSDARG00000020397)	prox3 (ENSDARG00000088810) ##22	tmem179ba (ENSDARG00000056233)	si:ch211-285j22.3 (ENSDARG00000100703)	ENSDARG00000100885	TMEM151A (ENSDARG00000077986)	mus81 (ENSDARG00000069326)	ovol1a (ENSDARG00000076472)	ENSDARG00000010940	ENSDARG00000089821	tkfc (ENSDARG00000062085)	ENSDARG00000101750	ENSDARG00000104169	ENSDARG00000089432	zgc:194655 (ENSDARG00000100942)	ENSDARG00000105614	casp23 (ENSDARG00000014657)
Euteleosteomorpha	ANCESTRAL SPECIES	201									ENSGT00950000182985.b.b.rc.a	ENSGT00940000166331	ENSGT00940000165651.b	ENSGT00900000141164.r.b	ENSGT00940000160303.a.a	ENSGT00940000156646.c	ENSGT00940000160125	ENSGT00940000154790.a.b ##22	ENSGT00510000048151.a	ENSGT00390000013762.a.f	ENSGT00390000005498	ENSGT00940000165739	ENSGT00940000165127.b	ENSGT00950000182924.A.a	ENSGT00390000015415	ENSGT00390000005739.a.a	ENSGT00800000124060.A.a	ENSGT00940000156187	ENSGT01060000248840	ENSGT01060000248594.e.a.m.a	ENSGT00390000014072.A	ENSGT00390000001134.b.`b.b	ENSGT00940000158972
Acanthomorphata	ANCESTRAL SPECIES	325											ENSGT00940000165651.b	ENSGT00900000141164.r.b	ENSGT00940000160303.a.a	ENSGT00940000156646.c	ENSGT00940000160125	ENSGT00940000154790.a.b ##22	ENSGT00510000048151.a
Euacanthomorphacea	ANCESTRAL SPECIES	17	ENSGT00390000008250	ENSGT00550000074944	ENSGT00940000158006	ENSGT00950000182916.a.b.a.b	ENSGT00390000008787.a	ENSGT00940000156306	ENSGT00990000213447	ENSGT00530000063652.a.a	ENSGT00390000013693	ENSGT00390000013762.a.f	ENSGT00940000165651.b	ENSGT00900000141164.r.b	ENSGT00940000160303.a.a	ENSGT00940000156646.c	ENSGT00940000160125	ENSGT00940000154790.a.b ##22	ENSGT00510000048151.a	ENSGT00940000166331	ENSGT00950000182985.b.b.sc	ENSGT00940000160539	ENSGT00940000164137.a	ENSGT00940000167292.a	ENSGT00940000164916	ENSGT00390000007971	ENSGT00390000009379	ENSGT00730000111179.a	ENSGT01030000234620.a.b.b.a ##9	ENSGT01030000234924	ENSGT00940000157941	ENSGT00800000125313	ENSGT00940000156954
Percomorphaceae	ANCESTRAL SPECIES	18	ENSGT00390000008250	ENSGT00550000074944	ENSGT00940000158006	ENSGT00950000182916.a.b.a.b	ENSGT00390000008787.a	ENSGT00940000156306	ENSGT00990000213447	ENSGT00530000063652.a.a	ENSGT00390000013693	ENSGT00390000013762.a.f	ENSGT00940000165651.b	ENSGT00900000141164.r.b	ENSGT00940000160303.a.a	ENSGT00940000156646.c	ENSGT00940000160125	ENSGT00940000154790.a.b ##22	ENSGT00510000048151.a	ENSGT00940000176150	ENSGT00940000166331	ENSGT00950000182985.b.b.sc	ENSGT00940000160539	ENSGT00940000164137.a	ENSGT00940000167292.a	ENSGT00940000164916	ENSGT00390000007971	ENSGT00390000009379	ENSGT00730000111179.a	ENSGT01030000234620.a.b.b.a ##9	ENSGT01030000234924	ENSGT00940000157941	ENSGT00800000125313
Percomorphaceae_B	ANCESTRAL SPECIES	19	ENSGT00390000008250	ENSGT00550000074944	ENSGT00940000158006	ENSGT00950000182916.a.b.a.b	ENSGT00390000008787.a	ENSGT00940000156306	ENSGT00990000213447	ENSGT00530000063652.a.a	ENSGT00390000013693	ENSGT00390000013762.a.f	ENSGT00940000165651.b	ENSGT00900000141164.r.b	ENSGT00940000160303.a.a	ENSGT00940000156646.c	ENSGT00940000160125	ENSGT00940000154790.a.b ##22	ENSGT00510000048151.a	ENSGT00770000120838.A	ENSGT00940000166331	ENSGT00950000182985.b.b.sc	ENSGT00940000160539	ENSGT00940000164137.a	ENSGT00940000167292.a	ENSGT00940000164916	ENSGT00940000168662	ENSGT00390000007971	ENSGT00390000009379	ENSGT00730000111179.a.b	ENSGT01030000234620.a.b.b.a ##9	ENSGT01030000234924	ENSGT00940000157941
Ovalentaria	ANCESTRAL SPECIES	20	ENSGT00940000158215	ENSGT00390000008250	ENSGT00550000074944	ENSGT00940000158006	ENSGT00950000182916.a.b.a.b	ENSGT00390000008787.a	ENSGT00940000156306	ENSGT00530000063652.a.a	ENSGT00390000013693	ENSGT00390000013762.a.f	ENSGT00940000165651.b	ENSGT00900000141164.r.b	ENSGT00940000160303.a.a	ENSGT00940000156646.c	ENSGT00940000160125	ENSGT00940000154790.a.b ##22	ENSGT00510000048151.a	ENSGT00770000120838.A	ENSGT00940000166331	ENSGT00950000182985.b.b.sc	ENSGT00940000160539	ENSGT00940000164137.a	ENSGT00940000167292.a	ENSGT00940000164916	ENSGT00940000168662	ENSGT00390000009379	ENSGT00390000007971	ENSGT00730000111179.a.b	ENSGT01030000234620.a.b.b.a ##9	ENSGT01030000234924	ENSGT00940000157941
Atherinomorphae	ANCESTRAL SPECIES	22	ENSGT00390000008250	ENSGT00550000074944	ENSGT00940000158006	ENSGT00950000182916.a.b.a.b	ENSGT00390000008787.a	ENSGT00940000156306	ENSGT00530000063652.a.a	ENSGT00390000013693.f	ENSGT00390000013762.a.f	ENSGT00940000165651.b	ENSGT00900000141164.r.b	ENSGT00940000160303.a.a	ENSGT00940000160330	ENSGT00940000156646.c	ENSGT00940000160125	ENSGT00940000154790.a.b ##22	ENSGT00510000048151.a	ENSGT00770000120838.A	ENSGT00940000166331	ENSGT00950000182985.b.b.sc	ENSGT00940000160539	ENSGT00940000164137.a	ENSGT00940000167292.a	ENSGT00940000164916	ENSGT00940000168662	ENSGT00390000009379	ENSGT00730000111179.a.b	ENSGT01030000234620.a.b.b.a ##9	ENSGT01030000234924	ENSGT00940000157941	ENSGT00800000125313
Cyprinodontiformes	ANCESTRAL SPECIES	22	ENSGT00940000158215	ENSGT00390000008250	ENSGT00550000074944	ENSGT00940000158006	ENSGT00950000182916.a.b.a.b	ENSGT00390000008787.a	ENSGT00940000156306	ENSGT00530000063652.a.a	ENSGT00390000013693.f	ENSGT00390000013762.a.f	ENSGT00940000165651.b	ENSGT00900000141164.r.b	ENSGT00940000160330	ENSGT00940000156646.c	ENSGT00940000160125	ENSGT00940000154790.a.b ##22	ENSGT00510000048151.a	ENSGT00770000120838.A	ENSGT00940000166331	ENSGT00950000182985.b.b.sc	ENSGT00940000160539	ENSGT00940000164137.a	ENSGT00940000167292.a	ENSGT00940000164916	ENSGT00390000007971	ENSGT00390000009379	ENSGT00730000111179.a.b	ENSGT01030000234620.a.b.b.a ##9	ENSGT01030000234924	ENSGT00940000157941	ENSGT00800000125313
Cyprinodontoidei	ANCESTRAL SPECIES	21	ENSGT00390000005970	ENSGT00940000158215	ENSGT00390000008250	ENSGT00550000074944	ENSGT00940000158006	ENSGT00950000182916.a.b.a.b	ENSGT00390000008787.a	ENSGT00940000156306	ENSGT00530000063652.a.a	ENSGT00390000013762.a.f	ENSGT00940000165651.b	ENSGT00900000141164.r.b	ENSGT00940000160330	ENSGT00940000156646.c	ENSGT00940000160125	ENSGT00940000154790.a.b ##22	ENSGT00510000048151.a	ENSGT00770000120838.A	ENSGT00940000166331	ENSGT00950000182985.b.b.sc	ENSGT00940000160539	ENSGT00940000164137.a	ENSGT00940000167292.a	ENSGT00940000164916	ENSGT00390000007971	ENSGT00390000009379	ENSGT00730000111179.a.b	ENSGT01030000234620.a.b.b.a ##9	ENSGT01030000234924	ENSGT00940000157941	ENSGT00800000125313
NAME_4	ANCESTRAL SPECIES	89	ENSGT00940000158215	ENSGT00390000008250	ENSGT00550000074944	ENSGT00940000158006	ENSGT00950000182916.a.b.a.b	ENSGT00390000008787.a	ENSGT00940000156306	ENSGT00530000063652.a.a	ENSGT00940000181945	ENSGT00390000013762.a.f	ENSGT00940000165651.b	ENSGT00900000141164.r.b	ENSGT00940000160303.a.a	ENSGT00940000156646.c	ENSGT00940000160125	ENSGT00940000154790.a.b ##22	ENSGT00510000048151.a	ENSGT00770000120838.A	ENSGT00940000166331	ENSGT00950000182985.b.b.sc	ENSGT00940000160539	ENSGT00940000164137.a	ENSGT00940000167292.a	ENSGT00940000164916	ENSGT00390000007971	ENSGT00390000009379	ENSGT00730000111179.a.b	ENSGT01030000234620.a.b.b.a ##9	ENSGT01030000234924	ENSGT00940000157941	ENSGT00940000156954
Mummichog	MODERN SPECIES	2374				zdhhc21 (ENSFHEG00000009925)	NFIB (ENSFHEG00000010053)	PPP3CA (ENSFHEG00000010077)	ENSFHEG00000010086	DDIT4L (ENSFHEG00000010090)	ENSFHEG00000010095	ENSFHEG00000010190	ENSFHEG00000010276	pcxb (ENSFHEG00000010369)	ENSFHEG00000010378	slc3a2a (ENSFHEG00000010390)	snx15 (ENSFHEG00000010396)	prox3 (ENSFHEG00000010411) ##22	tmem179ba (ENSFHEG00000010424)	si:ch211-285j22.3 (ENSFHEG00000010429)	brms1 (ENSFHEG00000010440)	ppp1r14bb (ENSFHEG00000010452)	ENSFHEG00000010461
Sheepshead minnow	MODERN SPECIES	205	DENND4C (ENSCVAG00000015506)	ENSCVAG00000015565	plaa (ENSCVAG00000015614)	zdhhc21 (ENSCVAG00000015652)	NFIB (ENSCVAG00000015678)	ENSCVAG00000015703	PPP3CA (ENSCVAG00000015759)	DDIT4L (ENSCVAG00000015778)	ENSCVAG00000015890	ENSCVAG00000015913	ENSCVAG00000015938	pcxb (ENSCVAG00000016055)	ENSCVAG00000016070	ENSCVAG00000016080	snx15 (ENSCVAG00000016085)	prox3 (ENSCVAG00000016093) ##22	tmem179ba (ENSCVAG00000016099)	si:ch211-285j22.3 (ENSCVAG00000016108)	brms1 (ENSCVAG00000016237)	ppp1r14bb (ENSCVAG00000016257)	plcb3 (ENSCVAG00000016277)	slc8a4b (ENSCVAG00000016400)	ENSCVAG00000016418	zgc:101765 (ENSCVAG00000016462)	gpha2 (ENSCVAG00000016474)	ENSCVAG00000016505	PPP2R5B (ENSCVAG00000016545) ##9
Poeciliinae	ANCESTRAL SPECIES	21	ENSGT00390000005970	ENSGT00940000158215	ENSGT00390000008250	ENSGT00550000074944	ENSGT00940000158006	ENSGT00950000182916.a.b.a.b	ENSGT00390000008787.a	ENSGT00940000156306	ENSGT00530000063652.a.a	ENSGT00390000013762.a.f	ENSGT00900000141164.r.b	ENSGT00940000165651.b	ENSGT00940000160330	ENSGT00940000156646.c	ENSGT00940000160125	ENSGT00940000154790.a.b ##22	ENSGT00510000048151.a	ENSGT00770000120838.A	ENSGT00940000166331	ENSGT00950000182985.b.b.sc	ENSGT00940000160539	ENSGT00940000164137.a	ENSGT00940000167292.a	ENSGT00940000164916	ENSGT00390000007971	ENSGT00390000009379	ENSGT00730000111179.a.b	ENSGT01030000234620.a.b.b.a ##9	ENSGT01030000234924	ENSGT00940000157941	ENSGT00800000125313
Poecilia	ANCESTRAL SPECIES	48	ENSGT00940000158215	ENSGT00390000008250	ENSGT00550000074944	ENSGT00940000158006	ENSGT00950000182916.a.b.a.b	ENSGT00390000008787.a	ENSGT00940000156306	ENSGT00530000063652.a.a	ENSGT00390000013693.f	ENSGT00390000013762.a.f	ENSGT00900000141164.r.b	ENSGT00940000165651.b	ENSGT00940000160330	ENSGT00940000156646.c	ENSGT00940000160125	ENSGT00940000154790.a.b ##22	ENSGT00510000048151.a	ENSGT00770000120838.A	ENSGT00940000166331	ENSGT00950000182985.b.b.sc	ENSGT00940000160539	ENSGT00940000164137.a	ENSGT00940000167292.a	ENSGT00940000164916	ENSGT00390000007971	ENSGT00390000009379	ENSGT00730000111179.a.b	ENSGT01030000234620.a.b.b.a ##9	ENSGT01030000234924	ENSGT00940000157941	ENSGT00800000125313
NAME_6	ANCESTRAL SPECIES	362												ENSGT00900000141164.r.b.f	ENSGT00940000160330	ENSGT00940000156646.c	ENSGT00940000160125	ENSGT00940000154790.a.b ##22	ENSGT00510000048151.a	ENSGT00770000120838.A	ENSGT00940000166331	ENSGT00950000182985.b.b.sc	ENSGT00940000160539	ENSGT00940000164137.a
Amazon molly	MODERN SPECIES	623													ENSPFOG00000006459	slc3a2a (ENSPFOG00000006520)	snx15 (ENSPFOG00000006598)	prox3 (ENSPFOG00000006645) ##22	tmem179ba (ENSPFOG00000006667)	si:ch211-285j22.3 (ENSPFOG00000020236)	brms1 (ENSPFOG00000006706)	ppp1r14bb (ENSPFOG00000006767)	plcb3 (ENSPFOG00000006869)	slc8a4b (ENSPFOG00000007726)
Sailfin molly	MODERN SPECIES	266												PC (ENSPLAG00000002906)	ENSPLAG00000002886	slc3a2a (ENSPLAG00000002878)	snx15 (ENSPLAG00000002873)	prox3 (ENSPLAG00000002869) ##22	tmem179ba (ENSPLAG00000002857)	si:ch211-285j22.3 (ENSPLAG00000002853)	brms1 (ENSPLAG00000002844)	ppp1r14bb (ENSPLAG00000023884)	plcb3 (ENSPLAG00000023782)
Guppy	MODERN SPECIES	448	DENND4C (ENSPREG00000019613)	ENSPREG00000019666	plaa (ENSPREG00000019752)	zdhhc21 (ENSPREG00000019810)	NFIB (ENSPREG00000019859)	ENSPREG00000019896	PPP3CA (ENSPREG00000019921)	DDIT4L (ENSPREG00000019942)	ENSPREG00000019956	pcxb (ENSPREG00000020000)	ENSPREG00000020067	ENSPREG00000020093	ENSPREG00000020118	ENSPREG00000020138	snx15 (ENSPREG00000020149)	prox3 (ENSPREG00000020160) ##22	tmem179ba (ENSPREG00000020173)	si:ch211-285j22.3 (ENSPREG00000020184)	brms1 (ENSPREG00000020193)	ppp1r14bb (ENSPREG00000020224)	plcb3 (ENSPREG00000020245)	slc8a4b (ENSPREG00000020294)	badb (ENSPREG00000020367)	zgc:101765 (ENSPREG00000020382)	ENSPREG00000020394	gpha2 (ENSPREG00000020405)	ENSPREG00000020412	PPP2R5B (ENSPREG00000020420) ##9	batf2 (ENSPREG00000020458)	arl2 (ENSPREG00000020490)	b3gat3 (ENSPREG00000000590)
Platyfish	MODERN SPECIES	5	DENND4C (ENSXMAG00000008498)	haus6 (ENSXMAG00000029941)	plaa (ENSXMAG00000008506)	zdhhc21 (ENSXMAG00000008523)	NFIB (ENSXMAG00000008538)	ENSXMAG00000008559	PPP3CA (ENSXMAG00000008560)	DDIT4L (ENSXMAG00000022743)	ENSXMAG00000005888	ENSXMAG00000023753	pcxb (ENSXMAG00000008574)	ENSXMAG00000024139	ENSXMAG00000029159	slc3a2a (ENSXMAG00000008626)	snx15 (ENSXMAG00000026422)	prox3 (ENSXMAG00000022382) ##22	tmem179ba (ENSXMAG00000027159)	si:ch211-285j22.3 (ENSXMAG00000019523)	brms1 (ENSXMAG00000008643)	ppp1r14bb (ENSXMAG00000025753)	plcb3 (ENSXMAG00000008666)	slc8a4b (ENSXMAG00000008678)	badb (ENSXMAG00000025229)	zgc:101765 (ENSXMAG00000008699)	ENSXMAG00000008706	gpha2 (ENSXMAG00000008709)	ENSXMAG00000008712	PPP2R5B (ENSXMAG00000008714) ##9	batf2 (ENSXMAG00000022355)	arl2 (ENSXMAG00000017060)	sb:cb1058 (ENSXMAG00000028999)
Oryzias	ANCESTRAL SPECIES	21	ENSGT00940000158215	ENSGT00390000008250	ENSGT00550000074944	ENSGT00940000158006	ENSGT00950000182916.a.b.a.b	ENSGT00390000008787.a	ENSGT00940000156306	ENSGT00530000063652.a.a	ENSGT00390000013693.f	ENSGT00390000013762.a.f	ENSGT00940000165651.b	ENSGT00900000141164.r.b	ENSGT00940000160303.a.a	ENSGT00940000156646.c	ENSGT00940000160125	ENSGT00940000154790.a.b ##22	ENSGT00510000048151.a	ENSGT00940000166331	ENSGT00950000182985.b.b.sc	ENSGT00940000160539	ENSGT00940000164137.a	ENSGT00940000167292.a	ENSGT00940000164916	ENSGT00940000168662	ENSGT00390000009379	ENSGT00730000111179.a.b	ENSGT01030000234620.a.b.b.a ##9	ENSGT01030000234924	ENSGT00940000157941	ENSGT00800000125313	ENSGT00940000156954
Oryzias_b	ANCESTRAL SPECIES	18	ENSGT00390000005970	ENSGT00940000158215	ENSGT00390000008250	ENSGT00550000074944	ENSGT00940000158006	ENSGT00950000182916.a.b.a.b	ENSGT00390000008787.a	ENSGT00940000156306	ENSGT00530000063652.a.a	ENSGT00390000013762.a.f	ENSGT00940000165651.b	ENSGT00900000141164.r.b	ENSGT00940000160303.a.a	ENSGT00940000156646.c	ENSGT00940000160125	ENSGT00940000154790.a.b ##22	ENSGT00510000048151.a	ENSGT00940000166331	ENSGT00950000182985.b.b.sc	ENSGT00940000160539	ENSGT00940000164137.a	ENSGT00940000167292.a	ENSGT00940000164916	ENSGT00940000168662	ENSGT00390000009379	ENSGT00730000111179.a.b	ENSGT01030000234620.a.b.b.a ##9	ENSGT01030000234924	ENSGT00940000157941	ENSGT00800000125313	ENSGT00940000156954
Indian medaka	MODERN SPECIES	19	ENSOMEG00000007048	plin2 (ENSOMEG00000007065)	DENND4C (ENSOMEG00000007166)	ENSOMEG00000007219	plaa (ENSOMEG00000007273)	zdhhc21 (ENSOMEG00000000948)	NFIB (ENSOMEG00000007380)	ENSOMEG00000007427	PPP3CA (ENSOMEG00000007511)	DDIT4L (ENSOMEG00000007560)	ENSOMEG00000007594	ENSOMEG00000007609	pcxb (ENSOMEG00000007719)	SLC3A2 (ENSOMEG00000007823)	snx15 (ENSOMEG00000007842)	prox3 (ENSOMEG00000007863) ##22	tmem179ba (ENSOMEG00000007901)	brms1 (ENSOMEG00000007933)	ppp1r14bb (ENSOMEG00000007960)	plcb3 (ENSOMEG00000008118)	slc8a4b (ENSOMEG00000008263)	ENSOMEG00000008313	zgc:101765 (ENSOMEG00000008336)	ENSOMEG00000008355	gpha2 (ENSOMEG00000008367)	ENSOMEG00000000205	PPP2R5B (ENSOMEG00000008434) ##9	batf2 (ENSOMEG00000008462)	arl2 (ENSOMEG00000008521)	sb:cb1058 (ENSOMEG00000008543)	b3gat3 (ENSOMEG00000000643)
Javanese ricefish	MODERN SPECIES	9	ENSOJAG00000012873	DENND4C (ENSOJAG00000012692)	ENSOJAG00000012564	plaa (ENSOJAG00000012010)	zdhhc21 (ENSOJAG00000011974)	NFIB (ENSOJAG00000011889)	ENSOJAG00000011862	PPP3CA (ENSOJAG00000011436)	DDIT4L (ENSOJAG00000011375)	ENSOJAG00000011365	ENSOJAG00000011355	pcxb (ENSOJAG00000010733)	ENSOJAG00000010603	SLC3A2 (ENSOJAG00000010590)	snx15 (ENSOJAG00000010581)	prox3 (ENSOJAG00000020644) ##22	tmem179ba (ENSOJAG00000020636)	brms1 (ENSOJAG00000020625)	ppp1r14bb (ENSOJAG00000020615)	slc8a4b (ENSOJAG00000019561)	zgc:101765 (ENSOJAG00000019498)	ENSOJAG00000019488	gpha2 (ENSOJAG00000019460)	ENSOJAG00000019420	PPP2R5B (ENSOJAG00000019078) ##9	batf2 (ENSOJAG00000018989)	arl2 (ENSOJAG00000018967)	b3gat3 (ENSOJAG00000018934)	naa40 (ENSOJAG00000018861)	rcor2 (ENSOJAG00000018737)	MARK2 (ENSOJAG00000018021)
Oryzias_a	ANCESTRAL SPECIES	27	ENSGT00940000158215	ENSGT00390000008250	ENSGT00550000074944	ENSGT00940000158006	ENSGT00950000182916.a.b.a.b	ENSGT00390000008787.a	ENSGT00940000156306	ENSGT00530000063652.a.a	ENSGT00390000013693.f	ENSGT00390000013762.a.f	ENSGT00940000165651.b	ENSGT00900000141164.r.b	ENSGT00940000160330	ENSGT00940000156646.c	ENSGT00940000160125	ENSGT00940000154790.a.b ##22	ENSGT00510000048151.a	ENSGT00940000166331	ENSGT00950000182985.b.b.sc	ENSGT00940000160539	ENSGT00940000164137.a	ENSGT00940000167292.a	ENSGT00940000164916	ENSGT00940000168662	ENSGT00390000009379	ENSGT00730000111179.a.b	ENSGT01030000234620.a.b.b.a ##9	ENSGT01030000234924	ENSGT00940000157941	ENSGT00800000125313	ENSGT00940000156954
Japanese Medaka HdrR	MODERN SPECIES	9	DENND4C (ENSORLG00000005090)	ENSORLG00000005097	plaa (ENSORLG00000005124)	zdhhc21 (ENSORLG00000005132)	NFIB (ENSORLG00000005185)	ENSORLG00000005223	ENSORLG00000024971	DDIT4L (ENSORLG00000030486)	ENSORLG00000005265	ENSORLG00000005287	pcxb (ENSORLG00000005298)	ENSORLG00000005321	ENSORLG00000028848	slc3a2a (ENSORLG00000005367)	snx15 (ENSORLG00000005383)	prox3 (ENSORLG00000024210) ##22	tmem179ba (ENSORLG00000005394)	ENSORLG00000027489	brms1 (ENSORLG00000005411)	ppp1r14bb (ENSORLG00000028526)	plcb3 (ENSORLG00000005471)	slc8a4b (ENSORLG00000005496)	ENSORLG00000022436	zgc:101765 (ENSORLG00000005511)	ENSORLG00000024283	gpha2 (ENSORLG00000005517)	ENSORLG00000023415	ENSORLG00000005552 ##9	batf2 (ENSORLG00000005559)	arl2 (ENSORLG00000005571)	sb:cb1058 (ENSORLG00000005581)
Chinese medaka	MODERN SPECIES	2699																prox3 (ENSOSIG00000004178) ##22
Ovalentaria_B	ANCESTRAL SPECIES	19	ENSGT00940000158215	ENSGT00390000008250	ENSGT00550000074944	ENSGT00940000158006	ENSGT00950000182916.a.b.a.b	ENSGT00390000008787.a	ENSGT00940000156306	ENSGT00530000063652.a.a	ENSGT00390000013693	ENSGT00390000013762.a.f	ENSGT00940000165651.b	ENSGT00900000141164.r.b	ENSGT00940000160303.a.a	ENSGT00940000156646.c	ENSGT00940000160125	ENSGT00940000154790.a.b ##22	ENSGT00510000048151.a	ENSGT00770000120838.A	ENSGT00940000166331	ENSGT00950000182985.b.b.sc	ENSGT00940000160539	ENSGT00940000164137.a	ENSGT00940000167292.a	ENSGT00940000164916	ENSGT00940000168662	ENSGT00390000009379	ENSGT00390000007971	ENSGT00730000111179.a.b	ENSGT01030000234620.a.b.b.a ##9	ENSGT01030000234924	ENSGT00940000157941
Pomacentridae	ANCESTRAL SPECIES	28	ENSGT00940000158215	ENSGT00390000008250	ENSGT00550000074944	ENSGT00940000158006	ENSGT00950000182916.a.b.a.b	ENSGT00390000008787.a	ENSGT00940000156306	ENSGT00530000063652.a.a	ENSGT00390000013693	ENSGT00390000013762.a.f	ENSGT00940000165651.b	ENSGT00900000141164.r.b	ENSGT00940000160303.a.a	ENSGT00940000156646.c	ENSGT00940000160125	ENSGT00940000154790.a.b ##22	ENSGT00510000048151.a	ENSGT00770000120838.A	ENSGT00940000166331	ENSGT00950000182985.b.b.sc	ENSGT00940000160539	ENSGT00940000164137.a	ENSGT00940000167292.a	ENSGT00940000164916	ENSGT00940000168662	ENSGT00390000007971	ENSGT00390000009379	ENSGT00730000111179.a.b	ENSGT01030000234620.a.b.b.a ##9	ENSGT01030000234924	ENSGT00940000157941
Pomacentridae_A	ANCESTRAL SPECIES	22	ENSGT00950000182920.b.a.b.a.a	ENSGT00390000005970	ENSGT00940000158215	ENSGT00390000008250	ENSGT00550000074944	ENSGT00940000158006	ENSGT00950000182916.a.b.a.b	ENSGT00390000008787.a	ENSGT00940000156306	ENSGT00530000063652.a.a	ENSGT00390000013762.a.f	ENSGT00940000165651.b	ENSGT00900000141164.r.b	ENSGT00940000156646.c	ENSGT00940000160125	ENSGT00940000154790.a.b ##22	ENSGT00510000048151.a	ENSGT00770000120838.A	ENSGT00940000166331	ENSGT00950000182985.b.b.sc	ENSGT00940000160539	ENSGT00940000164137.a	ENSGT00940000167292.a	ENSGT00940000164916	ENSGT00940000168662	ENSGT00390000007971	ENSGT00390000009379	ENSGT00730000111179.a.b	ENSGT01030000234620.a.b.b.a ##9	ENSGT00940000157941	ENSGT00940000156954
Amphiprion	ANCESTRAL SPECIES	43	ENSGT00950000182920.b.a.b.a.a	ENSGT00390000005970	ENSGT00940000158215	ENSGT00390000008250	ENSGT00550000074944	ENSGT00940000158006	ENSGT00950000182916.a.b.a.b	ENSGT00390000008787.a	ENSGT00940000156306	ENSGT00530000063652.a.a	ENSGT00390000013762.a.f	ENSGT00940000165651.b	ENSGT00900000141164.r.b	ENSGT00940000156646.c	ENSGT00940000160125	ENSGT00940000154790.a.b ##22	ENSGT00510000048151.a	ENSGT00770000120838.A	ENSGT00940000166331	ENSGT00950000182985.b.b.sc	ENSGT00940000160539	ENSGT00940000164137.a	ENSGT00940000167292.a	ENSGT00940000164916	ENSGT00390000007971	ENSGT00390000009379	ENSGT00730000111179.a.b	ENSGT01030000234620.a.b.b.a ##9	ENSGT00940000157941	ENSGT00940000156954	ENSGT00390000014903
Clown anemonefish	MODERN SPECIES	2034														slc3a2a (ENSAOCG00000005303)	snx15 (ENSAOCG00000005284)	ENSAOCG00000005276 ##22	tmem179ba (ENSAOCG00000005267)	si:ch211-285j22.3 (ENSAOCG00000005252)	brms1 (ENSAOCG00000002744)	ppp1r14bb (ENSAOCG00000005191)	plcb3 (ENSAOCG00000005175)
Orange clownfish	MODERN SPECIES	15	larp7 (ENSAPEG00000021823)	etnppl (ENSAPEG00000021767)	ENSAPEG00000021720	plaa (ENSAPEG00000021678)	zdhhc21 (ENSAPEG00000021644)	NFIB (ENSAPEG00000021618)	ENSAPEG00000021533	PPP3CA (ENSAPEG00000021489)	DDIT4L (ENSAPEG00000021471)	ENSAPEG00000021426	ENSAPEG00000021404	pcxb (ENSAPEG00000021274)	slc3a2a (ENSAPEG00000021232)	ENSAPEG00000021221	snx15 (ENSAPEG00000021203)	ENSAPEG00000021181 ##22	tmem179ba (ENSAPEG00000021161)	si:ch211-285j22.3 (ENSAPEG00000021151)	brms1 (ENSAPEG00000021133)	ppp1r14bb (ENSAPEG00000021114)	plcb3 (ENSAPEG00000021001)	slc8a4b (ENSAPEG00000020954)	badb (ENSAPEG00000020939)	zgc:101765 (ENSAPEG00000020929)	gpha2 (ENSAPEG00000020864)	ENSAPEG00000020849	PPP2R5B (ENSAPEG00000020809) ##9	arl2 (ENSAPEG00000020786)	b3gat3 (ENSAPEG00000020734)	naa40 (ENSAPEG00000020711)	rcor2 (ENSAPEG00000020634)
Spiny chromis	MODERN SPECIES	29	ENSAPOG00000022915	p2rx7 (ENSAPOG00000022980)	slc3a2a (ENSAPOG00000023046)	ENSAPOG00000023059	ENSAPOG00000023078	ENSAPOG00000023094	pcxb (ENSAPOG00000023217)	ENSAPOG00000023253	DDIT4L (ENSAPOG00000023267)	PPP3CA (ENSAPOG00000023432)	BANK1 (ENSAPOG00000023557)	NFIB (ENSAPOG00000023677)	zdhhc21 (ENSAPOG00000023746)	plaa (ENSAPOG00000023834)	snx15 (ENSAPOG00000023849)	prox3 (ENSAPOG00000023882) ##22	tmem179ba (ENSAPOG00000023916)	si:ch211-285j22.3 (ENSAPOG00000023940)	brms1 (ENSAPOG00000023974)	ppp1r14bb (ENSAPOG00000023980)	plcb3 (ENSAPOG00000024044)	slc8a4b (ENSAPOG00000024121)	zgc:101765 (ENSAPOG00000024194)	ENSAPOG00000024212
Bicolor damselfish	MODERN SPECIES	877											ENSSPAG00000023550	PC (ENSSPAG00000023548)	ENSSPAG00000023544	zgc:158423 (ENSSPAG00000023541)	snx15 (ENSSPAG00000023540)	prox3 (ENSSPAG00000023538) ##22
Cichlidae	ANCESTRAL SPECIES	20	ENSGT00940000158215	ENSGT00390000008250	ENSGT00550000074944	ENSGT00940000158006	ENSGT00950000182916.a.b.a.b	ENSGT00390000008787.a	ENSGT00940000156306	ENSGT00530000063652.a.a	ENSGT00390000013693	ENSGT00390000013762.a.f	ENSGT00940000165651.b	ENSGT00900000141164.r.b	ENSGT00940000160303.a.a	ENSGT00940000156646.c	ENSGT00940000160125	ENSGT00940000154790.a.b ##22	ENSGT00510000048151.a	ENSGT00770000120838.A	ENSGT00940000166331	ENSGT00950000182985.b.b.sc	ENSGT00940000160539	ENSGT00940000164137.a	ENSGT00940000167292.a	ENSGT00940000164916	ENSGT00940000168662	ENSGT00390000009379	ENSGT00730000111179.a.b	ENSGT01030000234620.a.b.b.a ##9	ENSGT01030000234924	ENSGT00940000157941	ENSGT00800000125313
Pseudocrenilabrinae	ANCESTRAL SPECIES	18	ENSGT00940000158215	ENSGT00390000008250	ENSGT00550000074944	ENSGT00940000158006	ENSGT00950000182916.a.b.a.b	ENSGT00390000008787.a	ENSGT00940000156306	ENSGT00530000063652.a.a	ENSGT00390000013693	ENSGT00390000013762.a.f	ENSGT00940000165651.b	ENSGT00900000141164.r.b	ENSGT00940000160303.a.a	ENSGT00940000156646.c	ENSGT00940000160125	ENSGT00940000154790.a.b ##22	ENSGT00510000048151.a	ENSGT00770000120838.A	ENSGT00940000166331	ENSGT00950000182985.b.b.sc	ENSGT00940000160539	ENSGT00940000164137.a	ENSGT00940000167292.a	ENSGT00940000164916	ENSGT00940000168662	ENSGT00390000009379	ENSGT00730000111179.a.b	ENSGT01030000234620.a.b.b.a ##9	ENSGT01030000234924	ENSGT00940000157941	ENSGT00800000125313
Pseudocrenilabrinae_A	ANCESTRAL SPECIES	23	ENSGT00940000158215	ENSGT00390000008250	ENSGT00550000074944	ENSGT00940000158006	ENSGT00950000182916.a.b.a.b	ENSGT00390000008787.a	ENSGT00940000156306	ENSGT00530000063652.a.a	ENSGT00390000013693	ENSGT00390000013762.a.f	ENSGT00940000165651.b	ENSGT00900000141164.r.b	ENSGT00940000160303.a.a	ENSGT00940000156646.c	ENSGT00940000160125	ENSGT00940000154790.a.b ##22	ENSGT00510000048151.a	ENSGT00770000120838.A	ENSGT00940000166331	ENSGT00950000182985.b.b.sc	ENSGT00940000160539	ENSGT00940000164137.a	ENSGT00940000167292.a	ENSGT00940000164916	ENSGT00940000168662	ENSGT00390000009379	ENSGT00730000111179.a.b	ENSGT01030000234620.a.b.b.a ##9	ENSGT01030000234924	ENSGT00940000157941	ENSGT00800000125313
Haplochromini	ANCESTRAL SPECIES	28	ENSGT00940000158215	ENSGT00390000008250	ENSGT00550000074944	ENSGT00940000158006	ENSGT00950000182916.a.b.a.b	ENSGT00390000008787.a	ENSGT00940000156306	ENSGT00530000063652.a.a	ENSGT00390000013693	ENSGT00390000013762.a.f	ENSGT00940000165651.b	ENSGT00900000141164.r.b	ENSGT00940000160303.a.a	ENSGT00940000156646.c	ENSGT00940000160125	ENSGT00940000154790.a.b ##22	ENSGT00510000048151.a	ENSGT00770000120838.A	ENSGT00940000166331	ENSGT00950000182985.b.b.sc	ENSGT00940000160539	ENSGT00940000164137.a	ENSGT00940000167292.a	ENSGT00940000164916	ENSGT00940000168662	ENSGT00390000009379	ENSGT00730000111179.a.b	ENSGT01030000234620.a.b.b.a ##9	ENSGT01030000234924	ENSGT00940000157941	ENSGT00800000125313
Burton s mouthbrooder	MODERN SPECIES	358	plin2 (ENSHBUG00000019172)	ENSHBUG00000019182	ENSHBUG00000019148	ENSHBUG00000019124	plaa (ENSHBUG00000019109)	zdhhc21 (ENSHBUG00000019087)	NFIB (ENSHBUG00000019049)	BANK1 (ENSHBUG00000019000)	ENSHBUG00000018985	DDIT4L (ENSHBUG00000018898)	ENSHBUG00000018874	pcxb (ENSHBUG00000018780)	ENSHBUG00000017200	slc3a2a (ENSHBUG00000000935)	snx15 (ENSHBUG00000017182)	prox3 (ENSHBUG00000017170) ##22	tmem179ba (ENSHBUG00000017159)	si:ch211-285j22.3 (ENSHBUG00000017141)	brms1 (ENSHBUG00000017133)	ppp1r14bb (ENSHBUG00000017091)	plcb3 (ENSHBUG00000017029)	slc8a4b (ENSHBUG00000016783)	ENSHBUG00000016684	zgc:101765 (ENSHBUG00000016681)	ENSHBUG00000016672	gpha2 (ENSHBUG00000016660)	PPP2R5B (ENSHBUG00000016642) ##9	batf2 (ENSHBUG00000016600)	arl2 (ENSHBUG00000016592)	b3gat3 (ENSHBUG00000016560)	naa40 (ENSHBUG00000016533)
Haplochromini_A	ANCESTRAL SPECIES	38	ENSGT00940000158215	ENSGT00390000008250	ENSGT00550000074944	ENSGT00940000158006	ENSGT00950000182916.a.b.a.b	ENSGT00390000008787.a	ENSGT00940000156306	ENSGT00530000063652.a.a	ENSGT00390000013693	ENSGT00390000013762.a.f	ENSGT00940000165651.b	ENSGT00900000141164.r.b	ENSGT00940000160303.a.a	ENSGT00940000156646.c	ENSGT00940000160125	ENSGT00940000154790.a.b ##22	ENSGT00510000048151.a	ENSGT00770000120838.A	ENSGT00940000166331	ENSGT00950000182985.b.b.sc	ENSGT00940000160539	ENSGT00940000164137.a	ENSGT00940000167292.a	ENSGT00940000164916	ENSGT00940000168662	ENSGT00390000009379	ENSGT00730000111179.a.b	ENSGT01030000234620.a.b.b.a ##9	ENSGT01030000234924	ENSGT00940000157941	ENSGT00800000125313
Haplochromini_B	ANCESTRAL SPECIES	25	ENSGT00940000158215	ENSGT00390000008250	ENSGT00550000074944	ENSGT00940000158006	ENSGT00950000182916.a.b.a.b	ENSGT00390000008787.a	ENSGT00940000156306	ENSGT00530000063652.a.a	ENSGT00390000013693	ENSGT00390000013762.a.f	ENSGT00940000165651.b	ENSGT00900000141164.r.b	ENSGT00940000160303.a.a	ENSGT00940000156646.c	ENSGT00940000160125	ENSGT00940000154790.a.b ##22	ENSGT00510000048151.a	ENSGT00770000120838.A	ENSGT00940000166331	ENSGT00950000182985.b.b.sc	ENSGT00940000160539	ENSGT00940000164137.a	ENSGT00940000167292.a	ENSGT00940000164916	ENSGT00940000168662	ENSGT00390000009379	ENSGT00730000111179.a.b	ENSGT01030000234620.a.b.b.a ##9	ENSGT01030000234924	ENSGT00940000157941	ENSGT00800000125313
Zebra mbuna	MODERN SPECIES	1106	DENND4C (ENSMZEG00005002264)	ENSMZEG00005002374	plaa (ENSMZEG00005002404)	zdhhc21 (ENSMZEG00005002434)	NFIB (ENSMZEG00005002467)	ENSMZEG00005002523	PPP3CA (ENSMZEG00005002547)	DDIT4L (ENSMZEG00005002599)	ENSMZEG00005002614	ENSMZEG00005002689	pcxb (ENSMZEG00005002715)	ENSMZEG00005002788	ENSMZEG00005002823	slc3a2a (ENSMZEG00005002842)	snx15 (ENSMZEG00005002849)	prox3 (ENSMZEG00005002858) ##22	tmem179ba (ENSMZEG00005002862)	si:ch211-285j22.3 (ENSMZEG00005002868)	brms1 (ENSMZEG00005002894)	ppp1r14bb (ENSMZEG00005002913)	plcb3 (ENSMZEG00005002928)	slc8a4b (ENSMZEG00005003054)	ENSMZEG00005003099	slc8a4b (ENSMZEG00005003115)	ENSMZEG00005003172	zgc:101765 (ENSMZEG00005003180)	ENSMZEG00005003217	gpha2 (ENSMZEG00005003229)	ENSMZEG00005003251	PPP2R5B (ENSMZEG00005003266) ##9	batf2 (ENSMZEG00005003315)
Eastern happy	MODERN SPECIES	15	plaa (ENSACLG00000022649)	zdhhc21 (ENSACLG00000022617)	NFIB (ENSACLG00000022544)	ENSACLG00000022465	ENSACLG00000022322	DDIT4L (ENSACLG00000022303)	ENSACLG00000022234	ENSACLG00000022184	ENSACLG00000022170	ENSACLG00000022149	ENSACLG00000022140	pcxb (ENSACLG00000022114)	ENSACLG00000022086	zgc:158423 (ENSACLG00000022026)	snx15 (ENSACLG00000022010)	prox3 (ENSACLG00000021996) ##22	tmem179ba (ENSACLG00000021977)	brms1 (ENSACLG00000021905)	ppp1r14bb (ENSACLG00000021867)	plcb3 (ENSACLG00000021657)	slc8a4b (ENSACLG00000021477)	ENSACLG00000021441	zgc:101765 (ENSACLG00000021435)	ENSACLG00000021425	gpha2 (ENSACLG00000021410)	ENSACLG00000021399	PPP2R5B (ENSACLG00000021379) ##9	batf2 (ENSACLG00000021362)	ENSACLG00000021354	arl2 (ENSACLG00000021338)	sb:cb1058 (ENSACLG00000021268)
P. nyererei	MODERN SPECIES	506		DENND4C (ENSPNYG00000021922)	haus6 (ENSPNYG00000021852)	plaa (ENSPNYG00000021816)	zdhhc21 (ENSPNYG00000021792)	NFIB (ENSPNYG00000021742)	ENSPNYG00000021703	PPP3CA (ENSPNYG00000021649)	DDIT4L (ENSPNYG00000021625)	ENSPNYG00000021612	ENSPNYG00000021558	ENSPNYG00000021533	PC (ENSPNYG00000021491)	slc3a2a (ENSPNYG00000021444)	snx15 (ENSPNYG00000021411)	prox3 (ENSPNYG00000021381) ##22	tmem179ba (ENSPNYG00000021362)	si:ch211-285j22.3 (ENSPNYG00000021350)	brms1 (ENSPNYG00000021336)	ppp1r14bb (ENSPNYG00000021318)	plcb3 (ENSPNYG00000021207)	slc8a4b (ENSPNYG00000021147)	ENSPNYG00000021132	zgc:101765 (ENSPNYG00000021115)	ENSPNYG00000021103	gpha2 (ENSPNYG00000021084)	ENSPNYG00000021076
Lyretail cichlid	MODERN SPECIES	381	DENND4C (ENSNBRG00000007705)	ENSNBRG00000007696	ENSNBRG00000007648	haus6 (ENSNBRG00000007598)	plaa (ENSNBRG00000007538)	zdhhc21 (ENSNBRG00000007509)	NFIB (ENSNBRG00000007455)	ENSNBRG00000007379	PPP3CA (ENSNBRG00000007040)	DDIT4L (ENSNBRG00000006989)	ENSNBRG00000006960	ENSNBRG00000006890	pcxb (ENSNBRG00000006831)	slc3a2a (ENSNBRG00000006815)	snx15 (ENSNBRG00000006804)	prox3 (ENSNBRG00000006786) ##22	tmem179ba (ENSNBRG00000006759)	brms1 (ENSNBRG00000006704)	ppp1r14bb (ENSNBRG00000006684)	plcb3 (ENSNBRG00000006591)	slc8a4b (ENSNBRG00000006527)	ENSNBRG00000006508	zgc:101765 (ENSNBRG00000006488)	gpha2 (ENSNBRG00000006468)	ENSNBRG00000006441	PPP2R5B (ENSNBRG00000006399) ##9	arl2 (ENSNBRG00000006393)	b3gat3 (ENSNBRG00000006305)	naa40 (ENSNBRG00000006277)	rcor2 (ENSNBRG00000005738)	ENSNBRG00000005677
Nile tilapia	MODERN SPECIES	15	DENND4C (ENSONIG00000013437)	ENSONIG00000013446	plaa (ENSONIG00000013448)	zdhhc21 (ENSONIG00000035752)	NFIB (ENSONIG00000013455)	BANK1 (ENSONIG00000013461)	PPP3CA (ENSONIG00000013465)	DDIT4L (ENSONIG00000013475)	ENSONIG00000013476	ENSONIG00000013478	ENSONIG00000013495	pcxb (ENSONIG00000013481)	ENSONIG00000040255	slc3a2a (ENSONIG00000013499)	snx15 (ENSONIG00000013503)	prox3 (ENSONIG00000037877) ##22	tmem179ba (ENSONIG00000013506)	brms1 (ENSONIG00000013509)	ppp1r14bb (ENSONIG00000013511)	plcb3 (ENSONIG00000013512)	slc8a4b (ENSONIG00000013515)	badb (ENSONIG00000013527)	zgc:101765 (ENSONIG00000034181)	ENSONIG00000031712	gpha2 (ENSONIG00000013529)	ENSONIG00000013530	ppp2r5b (ENSONIG00000013531) ##9	batf2 (ENSONIG00000037996)	arl2 (ENSONIG00000013539)	b3gat3 (ENSONIG00000013540)	naa40 (ENSONIG00000028929)
Midas cichlid	MODERN SPECIES	1021	ENSACIG00000023889	ENSACIG00000023893	plaa (ENSACIG00000023901)	zdhhc21 (ENSACIG00000023902)	NFIB (ENSACIG00000023904)	ENSACIG00000023907	ENSACIG00000023922	DDIT4L (ENSACIG00000023973)	ENSACIG00000023975	ENSACIG00000023977	pcxb (ENSACIG00000023981)	ENSACIG00000023987	ENSACIG00000023997	slc3a2a (ENSACIG00000024000)	snx15 (ENSACIG00000024004)	prox3 (ENSACIG00000024008) ##22	tmem179ba (ENSACIG00000024010)	si:ch211-285j22.3 (ENSACIG00000024012)	brms1 (ENSACIG00000024013)	ppp1r14bb (ENSACIG00000024015)	plcb3 (ENSACIG00000024019)
Percomorphaceae_C	ANCESTRAL SPECIES	20	ENSGT00390000008250	ENSGT00550000074944	ENSGT00940000158006	ENSGT00950000182916.a.b.a.b	ENSGT00390000008787.a	ENSGT00940000156306	ENSGT00990000213447	ENSGT00530000063652.a.a	ENSGT00390000013693	ENSGT00390000013762.a.f	ENSGT00940000165651.b	ENSGT00900000141164.r.b	ENSGT00940000160303.a.a	ENSGT00940000156646.c	ENSGT00940000160125	ENSGT00940000154790.a.b ##22	ENSGT00510000048151.a	ENSGT00770000120838.A	ENSGT00940000166331	ENSGT00950000182985.b.b.sc	ENSGT00940000160539	ENSGT00940000164137.a	ENSGT00940000167292.a	ENSGT00940000164916	ENSGT00940000168662	ENSGT00390000007971	ENSGT00390000009379	ENSGT00730000111179.a.b	ENSGT01030000234620.a.b.b.a ##9	ENSGT01030000234924	ENSGT00940000157941
Percomorphaceae_D	ANCESTRAL SPECIES	20	ENSGT00940000158215	ENSGT00390000008250	ENSGT00550000074944	ENSGT00940000158006	ENSGT00950000182916.a.b.a.b	ENSGT00390000008787.a	ENSGT00940000156306	ENSGT00530000063652.a.a	ENSGT00390000013693	ENSGT00390000013762.a.f	ENSGT00940000165651.b	ENSGT00900000141164.r.b	ENSGT00940000160303.a.a	ENSGT00940000156646.c	ENSGT00940000160125	ENSGT00940000154790.a.b ##22	ENSGT00510000048151.a	ENSGT00770000120838.A	ENSGT00940000166331	ENSGT00950000182985.b.b.sc	ENSGT00940000160539	ENSGT00940000164137.a	ENSGT00940000167292.a	ENSGT00940000164916	ENSGT00940000168662	ENSGT00390000007971	ENSGT00390000009379	ENSGT00730000111179.a.b	ENSGT01030000234620.a.b.b.a ##9	ENSGT01030000234924	ENSGT00940000157941
Carangaria	ANCESTRAL SPECIES	20	ENSGT00940000158215	ENSGT00390000008250	ENSGT00550000074944	ENSGT00940000158006	ENSGT00950000182916.a.b.a.b	ENSGT00390000008787.a	ENSGT00940000156306	ENSGT00530000063652.a.a	ENSGT00390000013693	ENSGT00390000013762.a.f	ENSGT00940000165651.b	ENSGT00900000141164.r.b	ENSGT00940000160303.a.a	ENSGT00940000156646.c	ENSGT00940000160125	ENSGT00940000154790.a.b ##22	ENSGT00510000048151.a	ENSGT00770000120838.A	ENSGT00940000166331	ENSGT00950000182985.b.b.sc	ENSGT00940000160539	ENSGT00940000164137.a	ENSGT00940000167292.a	ENSGT00940000164916	ENSGT00940000168662	ENSGT00390000007971	ENSGT00390000009379	ENSGT00730000111179.a.b	ENSGT01030000234620.a.b.b.a ##9	ENSGT01030000234924	ENSGT00940000157941
Carangaria_A	ANCESTRAL SPECIES	32	ENSGT00940000158215	ENSGT00390000008250	ENSGT00550000074944	ENSGT00940000158006	ENSGT00950000182916.a.b.a.b	ENSGT00390000008787.a	ENSGT00940000156306	ENSGT00530000063652.a.a	ENSGT00390000013693	ENSGT00390000013762.a.f	ENSGT00900000141164.r.b	ENSGT00940000165651.b	ENSGT00940000160303.a.a	ENSGT00940000156646.c	ENSGT00940000160125	ENSGT00940000154790.a.b ##22	ENSGT00510000048151.a	ENSGT00770000120838.A	ENSGT00940000166331	ENSGT00950000182985.b.b.sc	ENSGT00940000160539	ENSGT00940000164137.a	ENSGT00940000167292.a	ENSGT00940000164916	ENSGT00940000168662	ENSGT00390000007971	ENSGT00390000009379	ENSGT00730000111179.a.b	ENSGT01030000234620.a.b.b.a ##9	ENSGT01020000231217	ENSGT00940000157941
Seriola	ANCESTRAL SPECIES	43											ENSGT00900000141164.r.b	ENSGT00940000165651.b	ENSGT00940000160303.a.a	ENSGT00940000156646.c	ENSGT00940000160125	ENSGT00940000154790.a.b ##22	ENSGT00510000048151.a	ENSGT00770000120838.A	ENSGT00940000166331	ENSGT00950000182985.b.b.sc	ENSGT00940000160539	ENSGT00940000164137.a	ENSGT00940000167292.a	ENSGT00940000164916	ENSGT00940000168662	ENSGT00390000007971	ENSGT00390000009379	ENSGT00730000111179.a.b	ENSGT01030000234620.a.b.b.a ##9	ENSGT00940000157941	ENSGT00800000125313
Greater amberjack	MODERN SPECIES	100											pcxb (ENSSDUG00000020952)	ENSSDUG00000021056	ENSSDUG00000021089	zgc:158423 (ENSSDUG00000021101)	snx15 (ENSSDUG00000021146)	prox3 (ENSSDUG00000021157) ##22	tmem179ba (ENSSDUG00000021160)	si:ch211-285j22.3 (ENSSDUG00000021174)	brms1 (ENSSDUG00000021180)	ppp1r14bb (ENSSDUG00000021222)	plcb3 (ENSSDUG00000021257)	slc8a4b (ENSSDUG00000021324)	badb (ENSSDUG00000021348)	zgc:101765 (ENSSDUG00000021354)	MAJIN (ENSSDUG00000021360)	gpha2 (ENSSDUG00000021369)	ENSSDUG00000021375	PPP2R5B (ENSSDUG00000021381) ##9	arl2 (ENSSDUG00000021397)	sb:cb1058 (ENSSDUG00000021447)	b3gat3 (ENSSDUG00000021450)
Yellowtail amberjack	MODERN SPECIES	2656												ENSSLDG00000023039	pcxb (ENSSLDG00000022968)	zgc:158423 (ENSSLDG00000022941)	snx15 (ENSSLDG00000022936)	prox3 (ENSSLDG00000022928) ##22	tmem179ba (ENSSLDG00000022919)	si:ch211-285j22.3 (ENSSLDG00000022913)	brms1 (ENSSLDG00000022833)	ppp1r14bb (ENSSLDG00000022801)	ENSSLDG00000022788	plcb3 (ENSSLDG00000022702)
Barramundi perch	MODERN SPECIES	17	DENND4C (ENSLCAG00010017140)	haus6 (ENSLCAG00010017194)	plaa (ENSLCAG00010017203)	ENSLCAG00010017207	zdhhc21 (ENSLCAG00010017209)	NFIB (ENSLCAG00010017217)	BANK1 (ENSLCAG00010017237)	PPP3CA (ENSLCAG00010017315)	DDIT4L (ENSLCAG00010018169)	ENSLCAG00010018194	pcxb (ENSLCAG00010018212)	ENSLCAG00010018228	ENSLCAG00010018230	slc3a2a (ENSLCAG00010018234)	snx15 (ENSLCAG00010018239)	prox3 (ENSLCAG00010018245) ##22	tmem179ba (ENSLCAG00010018249)	brms1 (ENSLCAG00010018256)	ppp1r14bb (ENSLCAG00010018283)	plcb3 (ENSLCAG00010018321)
Pleuronectoidei	ANCESTRAL SPECIES	17	ENSGT00940000158215	ENSGT00390000008250	ENSGT00550000074944	ENSGT00940000158006	ENSGT00950000182916.a.b.a.b	ENSGT00390000008787.a	ENSGT00940000156306	ENSGT00530000063652.a.a	ENSGT00390000013693	ENSGT00390000013762.a.f	ENSGT00940000165651.b	ENSGT00900000141164.r.b	ENSGT00940000160303.a.a	ENSGT00940000156646.c	ENSGT00940000160125	ENSGT00940000154790.a.b ##22	ENSGT00510000048151.a	ENSGT00940000166331	ENSGT00950000182985.b.b.sc	ENSGT00940000160539	ENSGT00940000164137.a	ENSGT00940000167292.a	ENSGT00940000164916	ENSGT00940000168662	ENSGT00390000009379	ENSGT00730000111179.a.b	ENSGT01030000234620.a.b.b.a ##9	ENSGT01030000234924	ENSGT00940000157941	ENSGT00800000125313	ENSGT00940000156954
Turbot	MODERN SPECIES	16	ENSSMAG00000019441	ENSSMAG00000019421	ENSSMAG00000019189	ENSSMAG00000019168	ENSSMAG00000019060	BANK1 (ENSSMAG00000019045)	ENSSMAG00000018957	DDIT4L (ENSSMAG00000018933)	ENSSMAG00000018168	ENSSMAG00000018204	ENSSMAG00000018160	ENSSMAG00000018104	ENSSMAG00000018069	ENSSMAG00000018044	snx15 (ENSSMAG00000018024)	ENSSMAG00000018015 ##22	tmem179ba (ENSSMAG00000017975)	brms1 (ENSSMAG00000017913)	ppp1r14bb (ENSSMAG00000017898)	plcb3 (ENSSMAG00000017856)	slc8a4b (ENSSMAG00000017761)	badb (ENSSMAG00000017749)	zgc:101765 (ENSSMAG00000017732)	ENSSMAG00000032728	gpha2 (ENSSMAG00000026586)	ENSSMAG00000017698	ENSSMAG00000017668 ##9	batf2 (ENSSMAG00000017652)	arl2 (ENSSMAG00000017643)	b3gat3 (ENSSMAG00000017571)	naa40 (ENSSMAG00000017554)
Tongue sole	MODERN SPECIES		ENSCSEG00000017755	ENSCSEG00000017820	ENSCSEG00000017833	ENSCSEG00000017843	ENSCSEG00000017849	vbp1 (ENSCSEG00000017854)	RAB39B (ENSCSEG00000017861)	zgc:162171 (ENSCSEG00000017867)	ENSCSEG00000017883	zgc:92429 (ENSCSEG00000017919)	pcxb (ENSCSEG00000017955)	ENSCSEG00000018019	ENSCSEG00000018030	slc3a2a (ENSCSEG00000018043)	snx15 (ENSCSEG00000018054)	prox3 (ENSCSEG00000018067) ##22	tmem179ba (ENSCSEG00000018073)	brms1 (ENSCSEG00000018079)	si:ch211-285j22.3 (ENSCSEG00000018086)	ppp1r14bb (ENSCSEG00000018093)	ENSCSEG00000018098	plcb3 (ENSCSEG00000018114)	ANK2 (ENSCSEG00000018198)	ACO1 (ENSCSEG00000018262)	DNMT3B (ENSCSEG00000018277)	PAQR9 (ENSCSEG00000018284)	ENSCSEG00000018286	frem1a (ENSCSEG00000018293)	RAP1GDS1 (ENSCSEG00000018328)	ENSCSEG00000018336	slc1a1 (ENSCSEG00000018344)
Anabantaria	ANCESTRAL SPECIES	19	ENSGT01100000263582	ENSGT00940000162818.c.a.g.b	ENSGT00990000203723.b	ENSGT00390000003680.a.a.b	ENSGT00940000164842	ENSGT00940000157904.b	ENSGT00940000158972	ENSGT00390000001134.b.`b.b	ENSGT00390000014072.A	ENSGT01060000248594.e.a.n	ENSGT00940000165651.b	ENSGT00900000141164.r.b	ENSGT00940000160303.a.a	ENSGT00940000156646.c	ENSGT00940000160125	ENSGT00940000154790.a.b ##22	ENSGT00510000048151.a	ENSGT00940000166331	ENSGT00950000182985.b.b.sc	ENSGT00940000160539	ENSGT00940000164137.a	ENSGT00940000167292.a	ENSGT00940000164916	ENSGT00940000168662	ENSGT00390000007971	ENSGT00390000009379	ENSGT00730000111179.a.b	ENSGT01030000234620.a.b.b.a ##9	ENSGT01030000234924	ENSGT00940000157941	ENSGT00940000156954
Anabantoidei	ANCESTRAL SPECIES	22	ENSGT01100000263582	ENSGT00940000162818.c.a.g.b	ENSGT00990000203723.b	ENSGT00390000003680.a.a.b	ENSGT00940000164842	ENSGT00940000157904.b	ENSGT00940000158972	ENSGT00390000001134.b.`b.b	ENSGT00390000014072.A	ENSGT01060000248594.e.a.n	ENSGT00940000165651.b	ENSGT00900000141164.r.b	ENSGT00940000160303.a.a	ENSGT00940000156646.c	ENSGT00940000160125	ENSGT00940000154790.a.b ##22	ENSGT00510000048151.a	ENSGT00940000166331	ENSGT00950000182985.b.b.sc	ENSGT00940000160539	ENSGT00940000164137.a	ENSGT00940000167292.a	ENSGT00940000164916	ENSGT00940000168662	ENSGT00390000007971	ENSGT00390000009379	ENSGT00730000111179.a.b	ENSGT01030000234620.a.b.b.a ##9	ENSGT01030000234924	ENSGT00940000157941	ENSGT00940000156954
Climbing perch	MODERN SPECIES	9	ENSATEG00000015464	ENSATEG00000015485	ENSATEG00000015515	ENSATEG00000029189	ENSATEG00000015626	ENSATEG00000015664	ENSATEG00000015711	dachb (ENSATEG00000015743)	cnpy3 (ENSATEG00000015761)	trpc5a (ENSATEG00000015769)	ENSATEG00000015815	ENSATEG00000015899	ENSATEG00000015918	ENSATEG00000015953	snx15 (ENSATEG00000015964)	ENSATEG00000015978 ##22	tmem179ba (ENSATEG00000015993)	brms1 (ENSATEG00000016026)	ppp1r14bb (ENSATEG00000016041)	plcb3 (ENSATEG00000016052)	slc8a4b (ENSATEG00000016105)	badb (ENSATEG00000016189)	zgc:101765 (ENSATEG00000027016)	MAJIN (ENSATEG00000027471)	gpha2 (ENSATEG00000016216)	ENSATEG00000016225	PPP2R5B (ENSATEG00000030186) ##9	batf2 (ENSATEG00000027196)	arl2 (ENSATEG00000016272)	b3gat3 (ENSATEG00000016343)	naa40 (ENSATEG00000016349)
Siamese fighting fish	MODERN SPECIES	10	ENSBSLG00000000836	ENSBSLG00000000810	SORCS2 (ENSBSLG00000000496)	grpel1 (ENSBSLG00000000373)	tada2b (ENSBSLG00000000366)	ENSBSLG00000000362	ENSBSLG00000000357	ENSBSLG00000000348	pcxb (ENSBSLG00000000280)	ENSBSLG00000000196	ENSBSLG00000000185	ENSBSLG00000000168	ENSBSLG00000000157	ENSBSLG00000000149	snx15 (ENSBSLG00000000137)	prox3 (ENSBSLG00000000113) ##22	brms1 (ENSBSLG00000000102)	plcb3 (ENSBSLG00000001382)	ENSBSLG00000001208	tmem179ba (ENSBSLG00000001187)	brms1 (ENSBSLG00000001186)	ppp1r14bb (ENSBSLG00000001185)	slc8a4b (ENSBSLG00000001180)	badb (ENSBSLG00000001165)	zgc:101765 (ENSBSLG00000001164)	ENSBSLG00000001163	gpha2 (ENSBSLG00000001162)	ENSBSLG00000001160	PPP2R5B (ENSBSLG00000001156) ##9	arl2 (ENSBSLG00000001151)	b3gat3 (ENSBSLG00000001146)
Zig-zag eel	MODERN SPECIES	9	ENSMAMG00000009352	ENSMAMG00000027005	ENSMAMG00000009326	ENSMAMG00000024542	ENSMAMG00000009260	ENSMAMG00000009249	ENSMAMG00000009225	dachb (ENSMAMG00000009201)	cnpy3 (ENSMAMG00000009186)	trpc5a (ENSMAMG00000009148)	ENSMAMG00000009092	ENSMAMG00000009013	ENSMAMG00000008982	ENSMAMG00000008965	snx15 (ENSMAMG00000008962)	ENSMAMG00000008948 ##22	tmem179ba (ENSMAMG00000027109)	brms1 (ENSMAMG00000008874)	ppp1r14bb (ENSMAMG00000008860)	plcb3 (ENSMAMG00000008785)	slc8a4b (ENSMAMG00000008734)	badb (ENSMAMG00000008728)	zgc:101765 (ENSMAMG00000008718)	ENSMAMG00000008708	gpha2 (ENSMAMG00000008694)	ENSMAMG00000008688	ENSMAMG00000008651 ##9	batf2 (ENSMAMG00000024415)	arl2 (ENSMAMG00000028208)	b3gat3 (ENSMAMG00000008560)	naa40 (ENSMAMG00000024824)
Eupercaria	ANCESTRAL SPECIES	19	ENSGT00390000008250	ENSGT00550000074944	ENSGT00940000158006	ENSGT00950000182916.a.b.a.b	ENSGT00390000008787.a	ENSGT00940000156306	ENSGT00990000213447	ENSGT00530000063652.a.a	ENSGT00390000013693	ENSGT00390000013762.a.f	ENSGT00940000165651.b	ENSGT00900000141164.r.b	ENSGT00940000160303.a.a	ENSGT00940000156646.c	ENSGT00940000160125	ENSGT00940000154790.a.b ##22	ENSGT00510000048151.a	ENSGT00770000120838.A	ENSGT00940000166331	ENSGT00950000182985.b.b.sc	ENSGT00940000160539	ENSGT00940000164137.a	ENSGT00940000167292.a	ENSGT00940000164916	ENSGT00940000168662	ENSGT00390000007971	ENSGT00390000009379	ENSGT00730000111179.a.b	ENSGT01030000234620.a.b.b.a ##9	ENSGT01030000234924	ENSGT00940000157941
Tetraodontidae	ANCESTRAL SPECIES	29										ENSGT00390000013762.a.f	ENSGT00940000165651.b	ENSGT00900000141164.r.b	ENSGT00940000160330	ENSGT00940000156646.c	ENSGT00940000160125	ENSGT00940000154790.a.b ##22	ENSGT00510000048151.a	ENSGT00940000166331	ENSGT00950000182985.b.b.sc	ENSGT01010000227968	ENSGT00510000050415.C.i.a.a	ENSGT00940000174852	ENSGT00530000063506.B	ENSGT00940000160134	ENSGT00940000155384.b.b	ENSGT00390000002849	ENSGT00390000006227	ENSGT00550000075058	ENSGT01030000234590.B.a.b	ENSGT00940000167107	ENSGT00390000000592
Tetraodon	MODERN SPECIES	14	CTSO (ENSTNIG00000013029)	ENSTNIG00000001669	asb5a (ENSTNIG00000013028)	gpm6aa (ENSTNIG00000013027)	lrit3a (ENSTNIG00000000464)	egf (ENSTNIG00000013026)	elovl6 (ENSTNIG00000013025)	pitx2 (ENSTNIG00000013024)	gar1 (ENSTNIG00000013023)	ENSTNIG00000013022	eif4ea (ENSTNIG00000013021)	PC (ENSTNIG00000013020)	ENSTNIG00000013019	slc3a2a (ENSTNIG00000013018)	snx15 (ENSTNIG00000013017)	ENSTNIG00000013016 ##22	tmem179ba (ENSTNIG00000013015)	brms1 (ENSTNIG00000013014)	ppp1r14bb (ENSTNIG00000013013)	ENSTNIG00000013012	ENSTNIG00000013011	oxa1l (ENSTNIG00000013010)	slc7a7 (ENSTNIG00000013009)	ENSTNIG00000013008	CCNB1IP1 (ENSTNIG00000013007)	ttc5 (ENSTNIG00000013006)	mettl3 (ENSTNIG00000013005)	tm4sf5 (ENSTNIG00000013004)	zgc:103586 (ENSTNIG00000013003)	fis1 (ENSTNIG00000013002)	cldn15a (ENSTNIG00000013001)
Fugu	MODERN SPECIES	20	ENSTRUG00000017467	TMEM184C (ENSTRUG00000017477)	ednrab (ENSTRUG00000017482)	slc10a7 (ENSTRUG00000017490)	REELD1 (ENSTRUG00000022355)	ENSTRUG00000028270	ENSTRUG00000017497	abce1 (ENSTRUG00000017503)	anapc10 (ENSTRUG00000017519)	ENSTRUG00000017522	pcxb (ENSTRUG00000021779)	ENSTRUG00000015601	ENSTRUG00000032884	slc3a2a (ENSTRUG00000015563)	snx15 (ENSTRUG00000015560)	prox3 (ENSTRUG00000021817) ##22	brms1 (ENSTRUG00000015533)	ppp1r14bb (ENSTRUG00000015511)	ENSTRUG00000024574	ENSTRUG00000029750	ENSTRUG00000024949	oxa1l (ENSTRUG00000015484)	slc7a7 (ENSTRUG00000022931)	ENSTRUG00000025082	CCNB1IP1 (ENSTRUG00000022746)	ttc5 (ENSTRUG00000015399)	mettl3 (ENSTRUG00000015365)	tm4sf5 (ENSTRUG00000015352)	zgc:103586 (ENSTRUG00000015344)	fis1 (ENSTRUG00000028230)	cldn15a (ENSTRUG00000015308)
Eupecaria_A	ANCESTRAL SPECIES	20	ENSGT00390000008250	ENSGT00550000074944	ENSGT00940000158006	ENSGT00950000182916.a.b.a.b	ENSGT00390000008787.a	ENSGT00940000156306	ENSGT00990000213447	ENSGT00530000063652.a.a	ENSGT00390000013693	ENSGT00390000013762.a.f	ENSGT00940000165651.b	ENSGT00900000141164.r.b	ENSGT00940000160303.a.a	ENSGT00940000156646.c	ENSGT00940000160125	ENSGT00940000154790.a.b ##22	ENSGT00510000048151.a	ENSGT00770000120838.A	ENSGT00940000166331	ENSGT00950000182985.b.b.sc	ENSGT00940000160539	ENSGT00940000164137.a	ENSGT00940000167292.a	ENSGT00940000164916	ENSGT00940000168662	ENSGT00390000007971	ENSGT00390000009379	ENSGT00730000111179.a.b	ENSGT01030000234620.a.b.b.a ##9	ENSGT01030000234924	ENSGT00940000157941
Ballan wrasse	MODERN SPECIES	203								DDIT4L (ENSLBEG00000014803)	ENSLBEG00000014847	ENSLBEG00000014952	pcxb (ENSLBEG00000015103)	ENSLBEG00000015268	ENSLBEG00000015340	slc3a2a (ENSLBEG00000015391)	snx15 (ENSLBEG00000015411)	prox3 (ENSLBEG00000015435) ##22	tmem179ba (ENSLBEG00000015454)	brms1 (ENSLBEG00000015491)	ppp1r14bb (ENSLBEG00000015587)	ENSLBEG00000015658	plcb3 (ENSLBEG00000015918)	slc8a4b (ENSLBEG00000016129)	badb (ENSLBEG00000016200)	zgc:101765 (ENSLBEG00000016280)	gpha2 (ENSLBEG00000016346)	ENSLBEG00000016388	PPP2R5B (ENSLBEG00000016423) ##9	arl2 (ENSLBEG00000016494)	sb:cb1058 (ENSLBEG00000016671)	b3gat3 (ENSLBEG00000016700)	naa40 (ENSLBEG00000016743)
Eupecaria_B	ANCESTRAL SPECIES	20	ENSGT00390000008250	ENSGT00550000074944	ENSGT00940000158006	ENSGT00950000182916.a.b.a.b	ENSGT00390000008787.a	ENSGT00940000156306	ENSGT00990000213447	ENSGT00530000063652.a.a	ENSGT00390000013693	ENSGT00390000013762.a.f	ENSGT00940000165651.b	ENSGT00900000141164.r.b	ENSGT00940000160303.a.a	ENSGT00940000156646.c	ENSGT00940000160125	ENSGT00940000154790.a.b ##22	ENSGT00510000048151.a	ENSGT00770000120838.A	ENSGT00940000166331	ENSGT00950000182985.b.b.sc	ENSGT00940000160539	ENSGT00940000164137.a	ENSGT00940000167292.a	ENSGT00940000164916	ENSGT00940000168662	ENSGT00390000007971	ENSGT00390000009379	ENSGT00730000111179.a.b	ENSGT01030000234620.a.b.b.a ##9	ENSGT01030000234924	ENSGT00940000157941
Perciformes	ANCESTRAL SPECIES	19	ENSGT00390000008250	ENSGT00550000074944	ENSGT00940000158006	ENSGT00950000182916.a.b.a.b	ENSGT00390000008787.a	ENSGT00940000156306	ENSGT00990000213447	ENSGT00530000063652.a.a	ENSGT00390000013693	ENSGT00390000013762.a.f	ENSGT00940000165651.b	ENSGT00900000141164.r.b	ENSGT00940000160303.a.a	ENSGT00940000156646.c	ENSGT00940000160125	ENSGT00940000154790.a.b ##22	ENSGT00510000048151.a	ENSGT00940000166331	ENSGT00950000182985.b.b.sc	ENSGT00940000160539	ENSGT00940000164137.a	ENSGT00940000167292.a	ENSGT00940000164916	ENSGT00940000168662	ENSGT00390000007971	ENSGT00390000009379	ENSGT00730000111179.a.b	ENSGT01030000234620.a.b.b.a ##9	ENSGT01020000231217	ENSGT00940000157941	ENSGT00940000156954
Perciformes_a	ANCESTRAL SPECIES	18	ENSGT00390000008250	ENSGT00550000074944	ENSGT00940000158006	ENSGT00950000182916.a.b.a.b	ENSGT00390000008787.a	ENSGT00940000156306	ENSGT00990000213447	ENSGT00530000063652.a.a	ENSGT00390000013693	ENSGT00390000013762.a.f	ENSGT00940000165651.b	ENSGT00900000141164.r.b	ENSGT00940000160303.a.a	ENSGT00940000156646.c	ENSGT00940000160125	ENSGT00940000154790.a.b ##22	ENSGT00510000048151.a	ENSGT00940000166331	ENSGT00950000182985.b.b.sc	ENSGT00940000160539	ENSGT00940000164137.a	ENSGT00940000167292.a	ENSGT00940000164916	ENSGT00940000168662	ENSGT00390000007971	ENSGT00390000009379	ENSGT00730000111179.a.b	ENSGT01030000234620.a.b.b.a ##9	ENSGT01020000231217	ENSGT00940000157941	ENSGT00940000156954
Channel bull blenny	MODERN SPECIES	9	zdhhc21 (ENSCGOG00000013541)	NFIB (ENSCGOG00000013550)	ENSCGOG00000013627	PPP3CA (ENSCGOG00000013678)	PPP3CB (ENSCGOG00000013732)	DDIT4L (ENSCGOG00000013735)	ENSCGOG00000013737	ENSCGOG00000013750	ENSCGOG00000013754	pcxb (ENSCGOG00000013813)	ENSCGOG00000016042	ENSCGOG00000016047	ENSCGOG00000016081	slc3a2a (ENSCGOG00000016085)	snx15 (ENSCGOG00000016091)	prox3 (ENSCGOG00000016094) ##22	tmem179ba (ENSCGOG00000016096)	brms1 (ENSCGOG00000016099)	ppp1r14bb (ENSCGOG00000016120)	plcb3 (ENSCGOG00000016182)	slc8a4b (ENSCGOG00000017891)	badb (ENSCGOG00000018248)	zgc:101765 (ENSCGOG00000018249)	ENSCGOG00000018250	ENSCGOG00000018251	ENSCGOG00000018253	ENSCGOG00000018254	gpha2 (ENSCGOG00000018255)	ENSCGOG00000018258	PPP2R5B (ENSCGOG00000018285) ##9	arl2 (ENSCGOG00000020110)
Pike perch	MODERN SPECIES	65	haus6 (ENSSLUG00000023864)	plaa (ENSSLUG00000023886)	zdhhc21 (ENSSLUG00000023908)	NFIB (ENSSLUG00000023914)	BANK1 (ENSSLUG00000023931)	PPP3CA (ENSSLUG00000023960)	ENSSLUG00000024286	DDIT4L (ENSSLUG00000024289)	ENSSLUG00000024298	ENSSLUG00000024306	pcxb (ENSSLUG00000024376)	ENSSLUG00000024712	ENSSLUG00000024714	slc3a2a (ENSSLUG00000024715)	snx15 (ENSSLUG00000024716)	prox3 (ENSSLUG00000024719) ##22	tmem179ba (ENSSLUG00000024721)	brms1 (ENSSLUG00000024723)	ppp1r14bb (ENSSLUG00000024725)	plcb3 (ENSSLUG00000024765)	slc8a4b (ENSSLUG00000024964)
Cottioidei	ANCESTRAL SPECIES	20	ENSGT00940000158215	ENSGT00390000008250	ENSGT00550000074944	ENSGT00940000158006	ENSGT00950000182916.a.b.a.b	ENSGT00390000008787.a	ENSGT00940000156306	ENSGT00990000213447	ENSGT00530000063652.a.a	ENSGT00390000013693	ENSGT00390000013762.a.f	ENSGT00940000165651.b	ENSGT00900000141164.r.b	ENSGT00940000156646.c	ENSGT00940000160125	ENSGT00940000154790.a.b ##22	ENSGT00510000048151.a	ENSGT00940000166331	ENSGT00950000182985.b.b.sc	ENSGT00940000160539	ENSGT00940000164137.a	ENSGT00940000167292.a	ENSGT00940000164916	ENSGT00940000168662	ENSGT00390000009379	ENSGT00730000111179.a.b	ENSGT01030000234620.a.b.b.a ##9	ENSGT00940000157941	ENSGT00940000156954	ENSGT00390000014903	ENSGT00940000154196.a
Stickleback	MODERN SPECIES	7	ENSGACG00000019655	ENSGACG00000019656	plaa (ENSGACG00000019658)	zdhhc21 (ENSGACG00000019672)	NFIB (ENSGACG00000019677)	ENSGACG00000019686	PPP3CA (ENSGACG00000019688)	ENSGACG00000019699	DDIT4L (ENSGACG00000019700)	ENSGACG00000019701	ENSGACG00000019708	pcxb (ENSGACG00000019710)	ENSGACG00000019743	ENSGACG00000019745	snx15 (ENSGACG00000019747)	ENSGACG00000019750 ##22	tmem179ba (ENSGACG00000019751)	brms1 (ENSGACG00000019753)	ENSGACG00000019757	ppp1r14bb (ENSGACG00000019758)	plcb3 (ENSGACG00000019760)	ENSGACG00000019763	slc8a4b (ENSGACG00000019764)	badb (ENSGACG00000019768)	zgc:101765 (ENSGACG00000019770)	zgc:101765 (ENSGACG00000019790)	zgc:101765 (ENSGACG00000019794)	gpha2 (ENSGACG00000019799)	ENSGACG00000019802	PPP2R5B (ENSGACG00000019803) ##9	arl2 (ENSGACG00000019812)
Lumpfish	MODERN SPECIES	9	DENND4C (ENSCLMG00005011298)	ENSCLMG00005011360	plaa (ENSCLMG00005011366)	zdhhc21 (ENSCLMG00005011416)	NFIB (ENSCLMG00005011424)	ENSCLMG00005011521	PPP3CA (ENSCLMG00005011573)	ENSCLMG00005017458	DDIT4L (ENSCLMG00005017459)	ENSCLMG00005017460	ENSCLMG00005017461	pcxb (ENSCLMG00005017462)	ENSCLMG00005017476	slc3a2a (ENSCLMG00005017478)	snx15 (ENSCLMG00005017479)	prox3 (ENSCLMG00005017480) ##22	tmem179ba (ENSCLMG00005017481)	brms1 (ENSCLMG00005017482)	ppp1r14bb (ENSCLMG00005017483)	plcb3 (ENSCLMG00005017505)	slc8a4b (ENSCLMG00005020487)	badb (ENSCLMG00005020488)	zgc:101765 (ENSCLMG00005020489)	zgc:101765 (ENSCLMG00005020490)	ENSCLMG00005020491	gpha2 (ENSCLMG00005020492)	ENSCLMG00005020495	PPP2R5B (ENSCLMG00005020499) ##9	arl2 (ENSCLMG00005020507)	sox19b (ENSCLMG00005020513)	eif4a1a (ENSCLMG00005020514)
Eupecaria_C	ANCESTRAL SPECIES	20	ENSGT00390000008250	ENSGT00550000074944	ENSGT00940000158006	ENSGT00950000182916.a.b.a.b	ENSGT00390000008787.a	ENSGT00940000156306	ENSGT00990000213447	ENSGT00530000063652.a.a	ENSGT00390000013693	ENSGT00390000013762.a.f	ENSGT00940000165651.b	ENSGT00900000141164.r.b	ENSGT00940000160303.a.a	ENSGT00940000156646.c	ENSGT00940000160125.d	ENSGT00940000154790.a.b ##22	ENSGT00510000048151.a	ENSGT00770000120838.A	ENSGT00940000166331	ENSGT00950000182985.b.b.sc	ENSGT00940000160539	ENSGT00940000164137.a	ENSGT00940000167292.a	ENSGT00940000164916	ENSGT00940000168662	ENSGT00390000007971	ENSGT00390000009379	ENSGT00730000111179.a.b	ENSGT01030000234620.a.b.b.a ##9	ENSGT01030000234924	ENSGT00940000157941
Eupercaria_incertae_sedis	ANCESTRAL SPECIES	19	ENSGT00390000008250	ENSGT00550000074944	ENSGT00940000158006	ENSGT00950000182916.a.b.a.b	ENSGT00390000008787.a	ENSGT00940000156306	ENSGT00990000213447	ENSGT00530000063652.a.a	ENSGT00390000013693	ENSGT00390000013762.a.f	ENSGT00940000165651.b	ENSGT00900000141164.r.b	ENSGT00940000160303.a.a	ENSGT00940000156646.c	ENSGT00940000160125.d	ENSGT00940000154790.a.b ##22	ENSGT00510000048151.a	ENSGT00770000120838.A	ENSGT00940000166331	ENSGT00950000182985.b.b.sc	ENSGT00940000160539	ENSGT00940000164137.a	ENSGT00940000167292.a	ENSGT00940000164916	ENSGT00940000168662	ENSGT00390000007971	ENSGT00390000009379	ENSGT00730000111179.a.b	ENSGT01030000234620.a.b.b.a ##9	ENSGT01020000231217	ENSGT00940000157941
European seabass	MODERN SPECIES	16	ENSDLAG00005021817	ENSDLAG00005021759	ENSDLAG00005021746	ENSDLAG00005021687	BANK1 (ENSDLAG00005021567)	ENSDLAG00005020224	ENSDLAG00005020155	DDIT4L (ENSDLAG00005033814)	ENSDLAG00005020039	ENSDLAG00005034162	ENSDLAG00005027359	ENSDLAG00005019774	ENSDLAG00005019754	ENSDLAG00005019747	snx15 (ENSDLAG00005019744)	ENSDLAG00005019737 ##22	tmem179ba (ENSDLAG00005027982)	ENSDLAG00005028278	brms1 (ENSDLAG00005019691)	ppp1r14bb (ENSDLAG00005019688)	plcb3 (ENSDLAG00005014729)	badb (ENSDLAG00005027464)	slc8a4b (ENSDLAG00005013407)	MAJIN (ENSDLAG00005030779)	gpha2 (ENSDLAG00005013334)	PPP2R5B (ENSDLAG00005011693) ##9	arl2 (ENSDLAG00005026470)	b3gat3 (ENSDLAG00005011611)	naa40 (ENSDLAG00005028020)	rcor2 (ENSDLAG00005030856)	MARK2 (ENSDLAG00005009354)
Large yellow croaker	MODERN SPECIES	2	zdhhc21 (ENSLCRG00005011700)	NFIB (ENSLCRG00005011270)	ENSLCRG00005011266	ENSLCRG00005011263	PPP3CA (ENSLCRG00005010890)	DDIT4L (ENSLCRG00005010880)	ENSLCRG00005010879	ENSLCRG00005010877	ENSLCRG00005010876	ENSLCRG00005010874	pcxb (ENSLCRG00005009469)	ENSLCRG00005009448	slc3a2a (ENSLCRG00005009447)	ENSLCRG00005009445	ENSLCRG00005009441	prox3 (ENSLCRG00005009436) ##22	tmem179ba (ENSLCRG00005009433)	si:ch211-285j22.3 (ENSLCRG00005009432)	brms1 (ENSLCRG00005009407)	ppp1r14bb (ENSLCRG00005009403)	ENSLCRG00005009398	plcb3 (ENSLCRG00005005412)	slc8a4b (ENSLCRG00005000412)	badb (ENSLCRG00005000122)	zgc:101765 (ENSLCRG00005000097)	ENSLCRG00005000073	gpha2 (ENSLCRG00005000067)	ENSLCRG00005000063	ENSLCRG00005000059	arl2 (ENSLCRG00005021859)	b3gat3 (ENSLCRG00005021855)
Gilthead seabream	MODERN SPECIES	1	haus6 (ENSSAUG00010026875)	plaa (ENSSAUG00010026879)	zdhhc21 (ENSSAUG00010026889)	NFIB (ENSSAUG00010026891)	ENSSAUG00010026904	PPP3CA (ENSSAUG00010026929)	DDIT4L (ENSSAUG00010027011)	ENSSAUG00010027020	ENSSAUG00010027027	pcxb (ENSSAUG00010027042)	ENSSAUG00010027046	ENSSAUG00010027047	slc3a2a (ENSSAUG00010027055)	snx15 (ENSSAUG00010027071)	ENSSAUG00010027073	prox3 (ENSSAUG00010027074) ##22	tmem179ba (ENSSAUG00010027075)	brms1 (ENSSAUG00010027077)	ppp1r14bb (ENSSAUG00010027078)	plcb3 (ENSSAUG00010027111)	badb (ENSSAUG00010001301)	zgc:101765 (ENSSAUG00010001317)	ENSSAUG00010001336	gpha2 (ENSSAUG00010001350)	ENSSAUG00010001357	PPP2R5B (ENSSAUG00010001366) ##9	batf2 (ENSSAUG00010001371)	arl2 (ENSSAUG00010001376)	ENSSAUG00010001399	b3gat3 (ENSSAUG00010001406)	naa40 (ENSSAUG00010001421)
Tiger tail seahorse	MODERN SPECIES	479														ENSHCOG00000017770	snx15 (ENSHCOG00000017760)	prox3 (ENSHCOG00000017750) ##22	tmem179ba (ENSHCOG00000017722)	ENSHCOG00000017711	ppp1r14bb (ENSHCOG00000017702)	plcb3 (ENSHCOG00000017696)	ENSHCOG00000017668	kiaa0232 (ENSHCOG00000017647)	TBC1D14 (ENSHCOG00000017633)	ENSHCOG00000017569	ENSHCOG00000017519	cnpy4 (ENSHCOG00000017099)	ENSHCOG00000017091	ENSHCOG00000017085	pcolceb (ENSHCOG00000017077)	per1b (ENSHCOG00000017052)	rell1 (ENSHCOG00000017001)
Pinecone sodierfish	MODERN SPECIES	9	DENND4C (ENSMMDG00005015764)	ENSMMDG00005015805	plaa (ENSMMDG00005015812)	zdhhc21 (ENSMMDG00005015823)	NFIB (ENSMMDG00005015836)	BANK1 (ENSMMDG00005016148)	PPP3CA (ENSMMDG00005016762)	ENSMMDG00005019273	DDIT4L (ENSMMDG00005019275)	ENSMMDG00005019279	ENSMMDG00005019280	pcxb (ENSMMDG00005019294)	ENSMMDG00005019486	ENSMMDG00005019487	snx15 (ENSMMDG00005019490)	prox3 (ENSMMDG00005019492) ##22	tmem179ba (ENSMMDG00005019495)	ENSMMDG00005019497	brms1 (ENSMMDG00005019500)	ppp1r14bb (ENSMMDG00005019504)	plcb3 (ENSMMDG00005019507)	slc8a4b (ENSMMDG00005019514)	badb (ENSMMDG00005019525)	zgc:101765 (ENSMMDG00005019527)	MAJIN (ENSMMDG00005019530)	gpha2 (ENSMMDG00005019534)	ENSMMDG00005019537	PPP2R5B (ENSMMDG00005019547) ##9	arl2 (ENSMMDG00005019609)	b3gat3 (ENSMMDG00005019621)	naa40 (ENSMMDG00005019623)
Protacanthopterygii	ANCESTRAL SPECIES	136										ENSGT00940000166331.e	ENSGT00940000165651.b	ENSGT00900000141164.r.b	ENSGT00940000160303.a.a	ENSGT00940000156646.c	ENSGT00940000160125	ENSGT00940000154790.a.b ##22	ENSGT00510000048151.a	ENSGT00390000013762.a.f	ENSGT00390000005498	ENSGT00940000165739	ENSGT00940000165127.b	ENSGT00950000182924.A.a	ENSGT00940000160539	ENSGT00940000164137.a	ENSGT00940000167292.a	ENSGT00940000164916	ENSGT00390000007971	ENSGT00390000009379	ENSGT00730000111179.a	ENSGT01030000234620.a.b.b.a ##9	ENSGT01030000234924
Salmoninae	DUPLICATION
Salmoninae	ANCESTRAL SPECIES	832											ENSGT00940000165651.b.i	ENSGT00900000141164.r.b	ENSGT00940000160303.a.a.b	ENSGT00940000156646.c.f	ENSGT00940000160125	ENSGT00940000154790.a.b.c ##22	ENSGT00510000048151.a.e	ENSGT00390000013762.a.f.c.b	ENSGT00940000165739.d
Salmoninae_a	ANCESTRAL SPECIES	101														ENSGT00940000160303.a.a.a	ENSGT00940000156646.c.e	ENSGT00940000154790.a.b.c ##22	ENSGT00510000048151.a.e	ENSGT00390000013762.a.f.c.b	ENSGT00940000165739.d	ENSGT00390000001189.b.i.c	ENSGT00390000002596.a	ENSGT00540000073610.B	ENSGT00940000154285.a.a.f	ENSGT01070000253822.D.b.w	ENSGT00530000063854	ENSGT00940000161036.A.e	ENSGT00940000157146.a.a	ENSGT00390000017890.b.b	ENSGT00940000159617	ENSGT00800000124172.i	ENSGT00940000160640
Oncorhynchus	ANCESTRAL SPECIES	9	ENSGT00940000155905.b.k	ENSGT00940000156323.c.b	ENSGT00390000013075.b	ENSGT00940000158122.j	ENSGT00940000157467.z	ENSGT00390000011679	ENSGT00510000047351.b.s	ENSGT00940000155973.b.c.d.a	ENSGT00940000164842	ENSGT00390000003680.a.a.b	ENSGT00390000015415	ENSGT00950000182985.b.b.sc.d.a.a	ENSGT00940000166331.f	ENSGT00940000160303.a.a.a	ENSGT00940000156646.c.e	ENSGT00940000154790.a.b.c ##22	ENSGT00510000048151.a.e	ENSGT00390000013762.a.f.c.b	ENSGT00390000001189.b.i.c	ENSGT00390000002596.a	ENSGT00540000073610.B	ENSGT00940000154285.a.a.f	ENSGT01070000253822.D.b.w	ENSGT00530000063854	ENSGT00940000161036.A.e	ENSGT00940000157146.a.a	ENSGT00390000017890.b.b	ENSGT00940000159617	ENSGT00800000124172.i	ENSGT00940000160640	ENSGT00510000047770.c.b
Oncorhynchus_a	ANCESTRAL SPECIES	122														ENSGT00940000160303.a.a.a	ENSGT00940000156646.c.e	ENSGT00940000154790.a.b.c ##22	ENSGT00510000048151.a.e	ENSGT00390000013762.a.f.c.b	ENSGT00390000001189.b.i.c	ENSGT00390000002596.a	ENSGT00540000073610.B	ENSGT00940000154285.a.a.f	ENSGT01070000253822.D.b.w	ENSGT00530000063854	ENSGT00940000161036.A.e	ENSGT00940000157146.a.a	ENSGT00390000017890.b.b	ENSGT00940000159617	ENSGT00800000124172.i	ENSGT00940000160640	ENSGT00510000047770.c.b
Coho salmon	MODERN SPECIES	29	RNF150 (ENSOKIG00005032959)	ENSOKIG00005032937	ENSOKIG00005032932	ENSOKIG00005032916	TMEM184C (ENSOKIG00005032865)	ENSOKIG00005032850	PIP4P1 (ENSOKIG00005032812)	zgc:77880 (ENSOKIG00005032788)	NPY2R (ENSOKIG00005032772)	LRAT (ENSOKIG00005032762)	ENSOKIG00005032740	ENSOKIG00005032733	ENSOKIG00005032673	ENSOKIG00005032656	ENSOKIG00005032640	ENSOKIG00005032604 ##22	ENSOKIG00005032598	ENSOKIG00005032591	ENSOKIG00005032586	ENSOKIG00005032571	ENSOKIG00005032565	ENSOKIG00005032552	ENSOKIG00005032531	CLDND1 (ENSOKIG00005032522)	ENSOKIG00005032518	ENSOKIG00005032498	ENSOKIG00005032421	ENSOKIG00005032406	mfsd8 (ENSOKIG00005032397)	ENSOKIG00005032393	ENSOKIG00005032323
Rainbow trout	MODERN SPECIES	13	ENSOMYG00000065635	ENSOMYG00000024056	ENSOMYG00000051393	zgc:77880 (ENSOMYG00000060039)	ENSOMYG00000075790	ENSOMYG00000012002	ENSOMYG00000051074	ENSOMYG00000058779	ENSOMYG00000065277	ENSOMYG00000048693	ENSOMYG00000071042	ENSOMYG00000023713	ENSOMYG00000070401	ENSOMYG00000024019	ENSOMYG00000024003	ENSOMYG00000023971 ##22	ENSOMYG00000020500	ENSOMYG00000017475	ENSOMYG00000064038	ENSOMYG00000023777	ENSOMYG00000023865	ENSOMYG00000023875	ENSOMYG00000023881	ENSOMYG00000023891	ENSOMYG00000058958	ENSOMYG00000023922	ENSOMYG00000076447	ENSOMYG00000025448	ENSOMYG00000025496	ENSOMYG00000053123	ENSOMYG00000025565
Salmo	ANCESTRAL SPECIES	49																ENSGT00940000154790.a.b.c ##22	ENSGT00510000048151.a.e	ENSGT00390000013762.a.f.c.b	ENSGT00940000165739.d	ENSGT00950000182924.A.a.e	ENSGT00390000002596.a	ENSGT00650000093871	ENSGT00990000213768	ENSGT00540000073610.B	ENSGT00940000154285.a.a.f	ENSGT01070000253822.D.b.w	ENSGT00530000063854	ENSGT00940000161036.A.e	ENSGT00940000157146.a.a	ENSGT00390000017890.b.b	ENSGT00940000159617
River trout	MODERN SPECIES	38	ENSSTUG00000005001	ENSSTUG00000005052	ENSSTUG00000005055	LRAT (ENSSTUG00000005064)	ENSSTUG00000005067	ENSSTUG00000005071	cnpy3 (ENSSTUG00000005090)	ENSSTUG00000005107	ENSSTUG00000005162	ENSSTUG00000005166	ENSSTUG00000005185	ENSSTUG00000005190	brms1 (ENSSTUG00000005221)	ENSSTUG00000005233	ENSSTUG00000005252	prox3 (ENSSTUG00000005273) ##22	tmem179ba (ENSSTUG00000005288)	ENSSTUG00000005311	ENSSTUG00000005318	ovol1a (ENSSTUG00000005324)	ENSSTUG00000005331	cldnd1a (ENSSTUG00000005348)	ENSSTUG00000005358	ENSSTUG00000005371	ENSSTUG00000005391	ENSSTUG00000005610	ENSSTUG00000005651	ENSSTUG00000001107	SGCZ (ENSSTUG00000001152)	DCTN6 (ENSSTUG00000001195)	RBPMS (ENSSTUG00000001353)
Atlantic salmon	MODERN SPECIES	26	ENSSSAG00000110906	ENSSSAG00000003857	cnpy3 (ENSSSAG00000003877)	trpc5a (ENSSSAG00000119977)	ENSSSAG00000101621	ENSSSAG00000116019	ENSSSAG00000091100	ENSSSAG00000085707	ENSSSAG00000003898	tkfc (ENSSSAG00000003915)	ENSSSAG00000121389	ENSSSAG00000098904	ENSSSAG00000004015	ENSSSAG00000004035	4f2 (ENSSSAG00000004049)	prox3 (ENSSSAG00000121496) ##22	ENSSSAG00000107439	ENSSSAG00000096306	ENSSSAG00000083133	ovol1a (ENSSSAG00000089795)	ENSSSAG00000004107	ENSSSAG00000107874	ENSSSAG00000004487	ENSSSAG00000004293	ENSSSAG00000004444	ENSSSAG00000004327	ENSSSAG00000004284	ENSSSAG00000004254	ENSSSAG00000004126	ENSSSAG00000002771	ENSSSAG00000002712
Huchen	MODERN SPECIES	4966															snx15 (ENSHHUG00000041836)	prox3 (ENSHHUG00000041829) ##22
Salmoninae	ANCESTRAL SPECIES	941																ENSGT00940000154790.a.b.d ##22	ENSGT00510000048151.a.f	ENSGT00390000013762.a.f.c.a	ENSGT00390000005498	ENSGT00940000165739.c	ENSGT00940000165127.b	ENSGT00950000182924.A.a
Salmoninae_a	ANCESTRAL SPECIES	34							ENSGT00510000047351.b.t	ENSGT00940000165274.a	ENSGT00940000155927	ENSGT00940000155973.b.c.d.b	ENSGT00940000165651.b.i	ENSGT00900000141164.r.b	ENSGT00940000160303.a.a.b	ENSGT00940000156646.c.f	ENSGT00940000160125	ENSGT00940000154790.a.b.d ##22	ENSGT00510000048151.a.f	ENSGT00390000013762.a.f.d	ENSGT00940000161437.s.b	ENSGT00950000182774.b.a.b.a.b.a.b.a.a.b.a	ENSGT01100000263489.a.a.b.b.f.c.a.a.b.b.a.b.a.a.a.b.b	ENSGT00950000182774.b.a.b.a.b.a.b.a.a.a.a.a.a.b.a.b	ENSGT01100000263489.a.a.b.b.f.c.a.a.b.b.a.b.a.a.a.a.b	ENSGT00940000160539.j.b.a	ENSGT00940000164137.a.c.a	ENSGT00940000167292.a	ENSGT00940000164916	ENSGT00390000007971	ENSGT00390000009379.d	ENSGT01030000234620.a.b.b.a.l ##9	ENSGT00730000111179.a
Oncorhynchus	ANCESTRAL SPECIES	31													ENSGT00940000165651.b.i	ENSGT00900000141164.r.b	ENSGT00940000160125	ENSGT00940000154790.a.b.d ##22	ENSGT00510000048151.a.f	ENSGT00390000013762.a.f.c.a	ENSGT00390000005498	ENSGT00940000165739.c	ENSGT01100000263489.a.a.b.b.f.c.a.a.b.b.a.b.a.a.a.b.b	ENSGT00950000182774.b.a.b.a.b.a.b.a.a.a.a.a.a.b.a.b	ENSGT00940000160539.j.b.a	ENSGT00940000164137.a.c.a	ENSGT00940000167292.a	ENSGT00940000164916.ob	ENSGT00390000009379.d	ENSGT00730000111179.a	ENSGT01030000234620.a.b.b.a.l ##9	ENSGT00940000157941	ENSGT00940000163467.a.b.a.b.d
Rainbow trout	MODERN SPECIES	30	ENSOMYG00000012428	ENSOMYG00000074190	ENSOMYG00000012418	ENSOMYG00000053863	ENSOMYG00000012455	ENSOMYG00000059900	ENSOMYG00000076406	ENSOMYG00000070617	ENSOMYG00000051428	ENSOMYG00000061465	ENSOMYG00000075619	ENSOMYG00000074309	ENSOMYG00000069285	ENSOMYG00000063717	snx15 (ENSOMYG00000062212)	prox3 (ENSOMYG00000065817) ##22	tmem179ba (ENSOMYG00000057991)	ENSOMYG00000048367	ENSOMYG00000017457	ENSOMYG00000049980	mus81 (ENSOMYG00000017415)	ovol1a (ENSOMYG00000054390)	ENSOMYG00000052434	ENSOMYG00000012395	ENSOMYG00000074690	ENSOMYG00000054483	ENSOMYG00000055308	ENSOMYG00000065693	ENSOMYG00000069736	ENSOMYG00000055891	ENSOMYG00000012373
Oncorhynchus_a	ANCESTRAL SPECIES	207														ENSGT00940000160125	ENSGT00970000196969.a	ENSGT00940000154790.a.b.d ##22	ENSGT00510000048151.a.f	ENSGT00390000013762.a.f.c.a	ENSGT00390000005498	ENSGT00940000165739.c	ENSGT00950000182774.b.a.b.a.b.a.b.a.a.a.a.a.a.b.a.b	ENSGT00940000164137.a.c.a	ENSGT00940000167292.a	ENSGT00940000164916.ob	ENSGT00730000111179.a
Chinook salmon	MODERN SPECIES	23	wdr73 (ENSOTSG00005038458)	NEU3 (ENSOTSG00005038457)	pold3 (ENSOTSG00005038455)	chrdl2 (ENSOTSG00005038452)	spag7 (ENSOTSG00005038450)	KCNAB3 (ENSOTSG00005034741)	psmb6 (ENSOTSG00005034723)	ENSOTSG00005034722	ephb4a (ENSOTSG00005034706)	DLG4 (ENSOTSG00005034702)	mepcea (ENSOTSG00005034701)	her1 (ENSOTSG00005034700)	PAK3 (ENSOTSG00005034401)	ENSOTSG00005034394	ENSOTSG00005034393	prox3 (ENSOTSG00005034392) ##22	ENSOTSG00005034390	ENSOTSG00005034387	ENSOTSG00005034382	ENSOTSG00005034381	il13ra2 (ENSOTSG00005034378)	LRCH2 (ENSOTSG00005034373)	zgc:163098 (ENSOTSG00005034345)	WDR44 (ENSOTSG00005034157)	ENSOTSG00005034012	ENSOTSG00005034011	ENSOTSG00005034010	LTBP3 (ENSOTSG00005033793)	SPTBN2 (ENSOTSG00005033367)	dpf2 (ENSOTSG00005033361)	ENSOTSG00005033360
Salmo	ANCESTRAL SPECIES	238												ENSGT00900000141164.r.b	ENSGT00940000160303.a.a.b	ENSGT00940000156646.c.f	ENSGT00940000160125	ENSGT00940000154790.a.b.d ##22	ENSGT00510000048151.a.f	ENSGT00390000013762.a.f.c.a	ENSGT00390000005498	ENSGT00940000165739.c	ENSGT00940000165127.b	ENSGT00950000182924.A.a.f
River trout	MODERN SPECIES	35	ENSSTUG00000001044	rnf150b (ENSSTUG00000001037)	ENSSTUG00000001027	ENSSTUG00000001020	PPM1K (ENSSTUG00000001014)	abcg2a (ENSSTUG00000000848)	abcg2a (ENSSTUG00000000802)	ENSSTUG00000000792	tec (ENSSTUG00000000587)	CORO2A (ENSSTUG00000000483)	ENSSTUG00000000475	ENSSTUG00000000455	ENSSTUG00000000443	ENSSTUG00000000427	snx15 (ENSSTUG00000000417)	prox3 (ENSSTUG00000000409) ##22	tmem179ba (ENSSTUG00000000396)	ENSSTUG00000007092	ENSSTUG00000007082	ENSSTUG00000007076	ENSSTUG00000007070	ENSSTUG00000007067	ENSSTUG00000007053	ENSSTUG00000007011	ENSSTUG00000006976	ENSSTUG00000006960	ENSSTUG00000006957	arl2 (ENSSTUG00000006926)	ENSSTUG00000006869	b3gat3 (ENSSTUG00000006846)	NAA40 (ENSSTUG00000006829)
Huchen	MODERN SPECIES	12402																ENSHHUG00000015759 ##22
Northern pike	MODERN SPECIES	23	ENSELUG00000008085	ENSELUG00000027680	ENSELUG00000025650	ENSELUG00000028969	ENSELUG00000025334	tlr2 (ENSELUG00000008732)	ENSELUG00000008765	ENSELUG00000008797	ppp1r14bb (ENSELUG00000008839)	brms1 (ENSELUG00000008858)	PC (ENSELUG00000008974)	ENSELUG00000008888	ENSELUG00000009058	ENSELUG00000009099	snx15 (ENSELUG00000009138)	prox3 (ENSELUG00000009156) ##22	tmem179ba (ENSELUG00000009184)	ENSELUG00000009247	mus81 (ENSELUG00000009296)	ovol1a (ENSELUG00000000343)	ENSELUG00000009330	ENSELUG00000027499	ENSELUG00000030299	ENSELUG00000007305	ENSELUG00000029444	ENSELUG00000025084	osbp (ENSELUG00000009428)	ACY3 (ENSELUG00000009487)	cldnd1a (ENSELUG00000009499)	ENSELUG00000027838	ENSELUG00000009529
Osteoglossiformes	ANCESTRAL SPECIES	22	ENSGT01030000234924	ENSGT01030000234620.a.b.b.a.e ##9	ENSGT00730000111179.a	ENSGT00390000009379	ENSGT00390000007971	ENSGT00940000164916	ENSGT00940000167292	ENSGT00940000164137.a	ENSGT00940000160539	ENSGT00950000182985.b.b	ENSGT00940000166331	ENSGT00940000165651.b	ENSGT00900000141164.q.a.f	ENSGT00940000156646.c	ENSGT00940000160125	ENSGT00940000154790.a.b ##22	ENSGT00510000048151.a	ENSGT00390000013762.a.f	ENSGT00390000005498	ENSGT00940000165739.r.a	ENSGT00950000183000.c.a.a.b	ENSGT00940000158566	ENSGT00940000166209	ENSGT00390000009423.a	ENSGT00940000160034	ENSGT00940000162317	ENSGT00390000015815.g	ENSGT00940000159437.c	ENSGT00530000064165.a.d	ENSGT00390000003866.b	ENSGT00390000003153
Asian bonytongue	MODERN SPECIES	4	batf2 (ENSSFOG00015028308)	PPP2R5B (ENSSFOG00015030786) ##9	ENSSFOG00015030875	gpha2 (ENSSFOG00015008253)	zgc:101765 (ENSSFOG00015008299)	badb (ENSSFOG00015027637)	slc8a4b (ENSSFOG00015008306)	plcb3 (ENSSFOG00015008324)	PPP1R14B (ENSSFOG00015029736)	brms1 (ENSSFOG00015008462)	ENSSFOG00015008554	PC (ENSSFOG00015008487)	ENSSFOG00015030538	SLC3A2 (ENSSFOG00015008587)	snx15 (ENSSFOG00015008607)	prox3 (ENSSFOG00015008630) ##22	tmem179ba (ENSSFOG00015008651)	ENSSFOG00015008690	mus81 (ENSSFOG00015008711)	ovol1a (ENSSFOG00015008822)	cfl1 (ENSSFOG00015027485)	atl3 (ENSSFOG00015008871)	ENSSFOG00015008983	yif1a (ENSSFOG00015009008)	fosl1a (ENSSFOG00015009063)	ccdc85b (ENSSFOG00015009073)	fibpa (ENSSFOG00015009096)	efemp2a (ENSSFOG00015009134)	npas4a (ENSSFOG00015030070)	ENSSFOG00015009230	mrpl11 (ENSSFOG00015009200)
P. kingsleyae	MODERN SPECIES	114	arl2 (ENSPKIG00000024946)	batf2 (ENSPKIG00000024939)	PPP2R5B (ENSPKIG00000024922) ##9	ENSPKIG00000024912	gpha2 (ENSPKIG00000024906)	ENSPKIG00000024902	zgc:101765 (ENSPKIG00000024895)	badb (ENSPKIG00000024892)	slc8a4b (ENSPKIG00000024887)	plcb3 (ENSPKIG00000024871)	PPP1R14B (ENSPKIG00000024859)	BRMS1 (ENSPKIG00000024847)	ENSPKIG00000024840	PC (ENSPKIG00000024799)	snx15 (ENSPKIG00000024766)	prox3 (ENSPKIG00000024757) ##22	ENSPKIG00000024754	ENSPKIG00000024751	tmem179ba (ENSPKIG00000024743)	ENSPKIG00000024737	mus81 (ENSPKIG00000024730)	ovol1a (ENSPKIG00000024718)	CFL1 (ENSPKIG00000024709)	atl3 (ENSPKIG00000024694)	ENSPKIG00000024682	yif1a (ENSPKIG00000024673)	fosl1a (ENSPKIG00000024665)	ccdc85b (ENSPKIG00000024655)	fibpa (ENSPKIG00000024645)	efemp2a (ENSPKIG00000024628)	npas4a (ENSPKIG00000024609)
Spotted gar	MODERN SPECIES	667	ENSLOCG00000001978	slc8a4b (ENSLOCG00000001997)	ENSLOCG00000002021	gpha2 (ENSLOCG00000002035)	cth1 (ENSLOCG00000002047)	ENSLOCG00000002062	ENSLOCG00000002079	men1 (ENSLOCG00000002090)	ENSLOCG00000002101	pygmb (ENSLOCG00000002115)	sf1 (ENSLOCG00000002130)	ENSLOCG00000017609	taf6l (ENSLOCG00000002156)	arl2 (ENSLOCG00000002173)	ENSLOCG00000002188	ENSLOCG00000002197 ##22	ENSLOCG00000002212	TMEM151A (ENSLOCG00000017610)	si:ch211-285j22.3 (ENSLOCG00000017611)	tmem179ba (ENSLOCG00000002224)	cnih2 (ENSLOCG00000002236)	ENSLOCG00000002253	vps51 (ENSLOCG00000002267)	ENSLOCG00000002274	ENSLOCG00000002285	SCYL1 (ENSLOCG00000002300)	ENSLOCG00000002317	ENSLOCG00000002333	ENSLOCG00000002344	ENSLOCG00000002361	ENSLOCG00000002397
Reedfish	MODERN SPECIES		ENSECRG00000000354	ENSECRG00000000353	ENSECRG00000000352	ENSECRG00000000351	vars1 (ENSECRG00000000350)	ENSECRG00000000349	ENSECRG00000000348	ENSECRG00000000347	ENSECRG00000000346	ENSECRG00000000345	zgc:162193 (ENSECRG00000000344)	ENSECRG00000000343	ENSECRG00000000342	arl2 (ENSECRG00000000341)	ENSECRG00000000340	ENSECRG00000000339 ##22	naaladl1 (ENSECRG00000000338)	yif1a (ENSECRG00000000337)	ENSECRG00000000336	TMEM151A (ENSECRG00000000335)	nt5c2l1 (ENSECRG00000000334)	tmed4 (ENSECRG00000000333)	ddx56 (ENSECRG00000000332)	NPC1L1 (ENSECRG00000000331)	ykt6 (ENSECRG00000000330)	gck (ENSECRG00000000329)	myl7 (ENSECRG00000000328)	pold2 (ENSECRG00000000327)	aebp1a (ENSECRG00000000326)	pnx (ENSECRG00000000325)	ELMOD3 (ENSECRG00000000324)
Sarcopterygii	ANCESTRAL SPECIES	611														ENSGT00940000157941	ENSGT00940000160125	ENSGT00940000154790.a.b ##22	ENSGT01030000234598.b.b
Tetrapoda	ANCESTRAL SPECIES																	ENSGT00940000154790.a.b ##22
Amniota	ANCESTRAL SPECIES																	ENSGT00940000154790.a.b ##22
Sauria	ANCESTRAL SPECIES																	ENSGT00940000154790.a.b ##22
Archelosauria	ANCESTRAL SPECIES																	ENSGT00940000154790.a.b ##22
Cryptodira	ANCESTRAL SPECIES																	ENSGT00940000154790.a.b ##22
Testudinoidea	ANCESTRAL SPECIES																	ENSGT00940000154790.a.b ##22
Emydidae	ANCESTRAL SPECIES	13					ENSGT00940000156764.b	ENSGT00620000087966.b	ENSGT00940000157004	ENSGT00940000154901.C.b.f.a	ENSGT01030000234620.a.b.b.a ##9	ENSGT00390000009379	ENSGT00940000162373	ENSGT00940000164485	ENSGT00940000157941	ENSGT00940000160125	ENSGT00940000160988	ENSGT00940000154790.a.b ##22	ENSGT01030000234598.b.b	ENSGT00390000010028.c	ENSGT00390000009753	ENSGT00390000001738	ENSGT00940000162464	ENSGT00390000000417.a.a.b.a.a.b	ENSGT00390000017147	ENSGT00390000007479	ENSGT00390000017253.o	ENSGT00940000157743	ENSGT00940000154524.a	ENSGT00940000159147.f	ENSGT00390000016784	ENSGT00940000161776	ENSGT00940000155070
Three-toed box turtle	MODERN SPECIES	33	SCYL1 (ENSTMTG00000003827)	CDC42BPG (ENSTMTG00000002953)	EHD1 (ENSTMTG00000002871)	ENSTMTG00000002834	ENSTMTG00000002823	ATG2A (ENSTMTG00000002761)	ENSTMTG00000002676	ENSTMTG00000002660	PPP2R5B (ENSTMTG00000002653) ##9	GPHA2 (ENSTMTG00000002649)	ENSTMTG00000002643	ENSTMTG00000002640	ARL2 (ENSTMTG00000002634)	SNX15 (ENSTMTG00000002628)	SAC3D1 (ENSTMTG00000002623)	ENSTMTG00000002618 ##22	ENSTMTG00000002612	ZFPL1 (ENSTMTG00000002607)	VPS51 (ENSTMTG00000002597)	ENSTMTG00000002591	TM7SF2 (ENSTMTG00000002585)	ZNHIT2 (ENSTMTG00000002573)	FAU (ENSTMTG00000002567)	MRPL49 (ENSTMTG00000002564)	ENSTMTG00000002555	SYVN1 (ENSTMTG00000002548)	SPDYC (ENSTMTG00000002540)	CAPN1 (ENSTMTG00000002515)	POLA2 (ENSTMTG00000002499)	CDC42EP2 (ENSTMTG00000002496)	DPF2 (ENSTMTG00000002493)
painted turtle	MODERN SPECIES	2386	ENSCPBG00000023696	ENSCPBG00000023693	EHD1 (ENSCPBG00000023692)	ENSCPBG00000023687	ENSCPBG00000023685	ATG2A (ENSCPBG00000023681)	ENSCPBG00000023679	ENSCPBG00000023677	PPP2R5B (ENSCPBG00000023672) ##9	GPHA2 (ENSCPBG00000023669)	ENSCPBG00000023667	ENSCPBG00000023666	ARL2 (ENSCPBG00000023664)	SNX15 (ENSCPBG00000023662)	SAC3D1 (ENSCPBG00000023660)	ENSCPBG00000023657 ##22	NAALADL1 (ENSCPBG00000023654)	CDCA5 (ENSCPBG00000023649)	ZFPL1 (ENSCPBG00000023648)	VPS51 (ENSCPBG00000023645)	ENSCPBG00000023643	TM7SF2 (ENSCPBG00000023641)	ZNHIT2 (ENSCPBG00000023638)	FAU (ENSCPBG00000023637)	ENSCPBG00000023636	ENSCPBG00000023634	SYVN1 (ENSCPBG00000023630)	SPDYC (ENSCPBG00000023629)	CAPN1 (ENSCPBG00000023622)	POLA2 (ENSCPBG00000023619)	CHRM1 (ENSCPBG00000023618)
Cyclostomata	ANCESTRAL SPECIES																	ENSGT00940000154790.a.b ##22
Hagfish	DUPLICATION
Hagfish	MODERN SPECIES	1307									lhfpl3 (ENSEBUG00000002713)	lhfpl3 (ENSEBUG00000009495)	ENSEBUG00000012575	ENSEBUG00000003667	lhfpl3 (ENSEBUG00000010594)	ENSEBUG00000008438	ENSEBUG00000011705	ENSEBUG00000000310 ##22	ENSEBUG00000016845 #23	ENSEBUG00000006047	ENSEBUG00000003635	ENSEBUG00000010566	enc3 (ENSEBUG00000006538)	ENSEBUG00000010461	ENSEBUG00000011838	ENSEBUG00000002787	ENSEBUG00000005219	ENSEBUG00000013312	FGF22 (ENSEBUG00000003583)	ENSEBUG00000005728	ENSEBUG00000015472
Hagfish	MODERN SPECIES	1448	ENSEBUG00000011033	ENSEBUG00000011373	ENSEBUG00000015001	ENSEBUG00000001323	ENSEBUG00000016848	ENSEBUG00000001266	CSNK2A2 (ENSEBUG00000010907)	ENSEBUG00000000485	RAB2B (ENSEBUG00000007110)	ENSEBUG00000008922	mettl3 (ENSEBUG00000012428)	ENSEBUG00000015965	ENSEBUG00000004412	ENSEBUG00000002163	ZBTB18 (ENSEBUG00000011621)	ENSEBUG00000013981 ##22	ENSEBUG00000004089 #24	ENSEBUG00000009732	ENSEBUG00000005051	ENSEBUG00000001835	ENSEBUG00000002298	ENSEBUG00000002352