Gnathostomata	ANCESTRAL SPECIES	353																ENSGT01050000244887.A.a.a.a #22	ENSGT00390000005584	ENSGT00940000161012	ENSGT00940000161046	ENSGT00940000156887 #7	ENSGT00940000160377 #11	ENSGT01050000244879.a.b	ENSGT00390000009595.b	ENSGT00950000183135.A.b
Euteleostomi	ANCESTRAL SPECIES	911																ENSGT01050000244887.A.a.a.a #22	ENSGT00390000005584	ENSGT00940000159788.b #24
Sarcopterygii	ANCESTRAL SPECIES	198						ENSGT00940000160969	ENSGT00530000064158	ENSGT01030000234518.C.a.a	ENSGT00390000005100 #36	ENSGT01050000244887.A.a.a.b #35	ENSGT00940000159005 #27	ENSGT00470000042444 #30	ENSGT00940000161143 #29	ENSGT00940000160550 #28	ENSGT00940000159869 #26	ENSGT01050000244887.A.a.a.a #22	ENSGT00940000159543 #23	ENSGT00390000005584	ENSGT00940000159788.b #24	ENSGT00940000155078.b	ENSGT00940000166677	ENSGT00950000183209.a	ENSGT00390000006734.a	ENSGT00950000182923.A	ENSGT00530000063000.a.a.b #21
Tetrapoda	ANCESTRAL SPECIES	45	ENSGT00390000018541 #9	ENSGT00390000010157.b #10	ENSGT00940000160377 #11	ENSGT00940000158445 #13	ENSGT00940000155764.C #14	ENSGT00530000063679.B #15	ENSGT00940000166551	ENSGT00940000163421	ENSGT00940000156719 #16	ENSGT00940000158178 #17	ENSGT00900000143551	ENSGT00940000159089 #18	ENSGT00940000159801.B #19	ENSGT00390000005605 #20	ENSGT00530000063000.a.a.b #21	ENSGT01050000244887.A.a.a.a #22	ENSGT00940000159543 #23	ENSGT00390000005584	ENSGT00940000159788.b #24	ENSGT00390000013443.c #25	ENSGT00940000159869 #26	ENSGT00940000160550 #28	ENSGT00940000161143 #29	ENSGT00470000042444 #30	ENSGT00940000159005 #27	ENSGT00390000014512 #34	ENSGT01050000244887.A.a.a.b #35	ENSGT00390000005100 #36	ENSGT00510000047802	ENSGT01030000234518.C.a.a	ENSGT00530000064158
Amniota	ANCESTRAL SPECIES	31	ENSGT00390000018541 #9	ENSGT00390000010157.b #10	ENSGT00940000160377 #11	ENSGT00940000158445 #13	ENSGT00940000155764.C #14	ENSGT00530000063679.B #15	ENSGT00940000166551	ENSGT00940000163421	ENSGT00940000156719 #16	ENSGT00940000158178 #17	ENSGT00940000159089 #18	ENSGT00940000159801.B #19	ENSGT00390000005605 #20	ENSGT00950000182923.A	ENSGT00530000063000.a.a.b #21	ENSGT01050000244887.A.a.a.a #22	ENSGT00940000159543 #23	ENSGT00390000005584	ENSGT00940000159788.b #24	ENSGT00390000013443.c #25	ENSGT00940000159869 #26	ENSGT00940000160550 #28	ENSGT00940000161143 #29	ENSGT00470000042444 #30	ENSGT00940000159005 #27	ENSGT00390000014512 #34	ENSGT01050000244887.A.a.a.b #35	ENSGT00940000172524	ENSGT00390000005100 #36	ENSGT00510000047802	ENSGT01030000234518.C.a.a
Mammalia	ANCESTRAL SPECIES	42	ENSGT00940000156887 #7	ENSGT00390000018541 #9	ENSGT00390000010157.b #10	ENSGT00940000160377 #11	ENSGT00390000008862 #12	ENSGT00940000158445 #13	ENSGT00940000155764.C #14	ENSGT00530000063679.B #15	ENSGT00940000163421	ENSGT00940000156719 #16	ENSGT00940000158178 #17	ENSGT00940000159089 #18	ENSGT00940000159801.B #19	ENSGT00390000005605 #20	ENSGT00530000063000.a.a.b #21	ENSGT01050000244887.A.a.a.a #22	ENSGT00940000159543 #23	ENSGT00940000159788.b #24	ENSGT00390000013443.c #25	ENSGT00940000159869 #26	ENSGT00940000160550 #28	ENSGT00940000161143 #29	ENSGT00470000042444 #30	ENSGT00940000159005 #27	ENSGT00390000014512 #34	ENSGT01050000244887.A.a.a.b #35	ENSGT00940000172524	ENSGT00390000005100 #36	ENSGT00510000047802	ENSGT01030000234518.C.a.a	ENSGT00530000064158
Theria	ANCESTRAL SPECIES	29	ENSGT00940000156887 #7	ENSGT00390000018541 #9	ENSGT00390000010157.b #10	ENSGT00940000160377 #11	ENSGT00390000008862 #12	ENSGT00940000158445 #13	ENSGT00940000155764.C #14	ENSGT00530000063679.B #15	ENSGT00940000163421	ENSGT00940000156719 #16	ENSGT00940000158178 #17	ENSGT00940000159089 #18	ENSGT00940000159801.B #19	ENSGT00390000005605 #20	ENSGT00530000063000.a.a.b #21	ENSGT01050000244887.A.a.a.a #22	ENSGT00940000159543 #23	ENSGT00940000159788.b #24	ENSGT00390000013443.c #25	ENSGT00940000159869 #26	ENSGT00940000159005 #27	ENSGT00940000160550 #28	ENSGT00940000161143 #29	ENSGT00470000042444 #30	ENSGT00940000162184 #31	ENSGT00940000162431 #32	ENSGT00390000014512 #34	ENSGT01050000244887.A.a.a.b #35	ENSGT00940000172524	ENSGT00390000005100 #36	ENSGT00510000047802
Eutheria	ANCESTRAL SPECIES	27	ENSGT00940000161046	ENSGT00940000156887 #7	ENSGT00390000018541 #9	ENSGT00390000010157.b #10	ENSGT00940000160377 #11	ENSGT00390000008862 #12	ENSGT00940000158445 #13	ENSGT00940000155764.C #14	ENSGT00530000063679.B #15	ENSGT00940000156719 #16	ENSGT00940000158178 #17	ENSGT00940000159089 #18	ENSGT00940000159801.B #19	ENSGT00390000005605 #20	ENSGT00530000063000.a.a.b #21	ENSGT01050000244887.A.a.a.a #22	ENSGT00940000159543 #23	ENSGT00940000159788.b #24	ENSGT00390000013443.c #25	ENSGT00940000159869 #26	ENSGT00940000159005 #27	ENSGT00940000160550 #28	ENSGT00940000161143 #29	ENSGT00470000042444 #30	ENSGT00940000162184 #31	ENSGT00940000162431 #32	ENSGT00940000162311 #33	ENSGT00390000014512 #34	ENSGT01050000244887.A.a.a.b #35	ENSGT00940000172524	ENSGT00390000005100 #36
Boreoeutheria	ANCESTRAL SPECIES	18	ENSGT00940000156887 #7	ENSGT00390000018541 #9	ENSGT00390000010157.b #10	ENSGT00940000160377 #11	ENSGT00390000008862 #12	ENSGT00940000158445 #13	ENSGT00940000155764.C #14	ENSGT00530000063679.B #15	ENSGT00940000156719 #16	ENSGT00900000143551	ENSGT00940000158178 #17	ENSGT00940000159089 #18	ENSGT00940000159801.B #19	ENSGT00390000005605 #20	ENSGT00530000063000.a.a.b #21	ENSGT01050000244887.A.a.a.a #22	ENSGT00940000159543 #23	ENSGT00940000159788.b #24	ENSGT00390000013443.c #25	ENSGT00940000159869 #26	ENSGT00940000159005 #27	ENSGT00940000160550 #28	ENSGT00940000161143 #29	ENSGT00470000042444 #30	ENSGT00940000162184 #31	ENSGT00940000162431 #32	ENSGT00940000162311 #33	ENSGT00390000014512 #34	ENSGT01050000244887.A.a.a.b #35	ENSGT00940000172524	ENSGT00390000005100 #36
Laurasiatheria	ANCESTRAL SPECIES	15	ENSGT00390000018541 #9	ENSGT00390000010157.b #10	ENSGT00940000160377 #11	ENSGT00390000008862 #12	ENSGT00940000158445 #13	ENSGT00940000155764.C #14	ENSGT00530000063679.B #15	ENSGT00940000156719 #16	ENSGT01100000264612	ENSGT00940000158178 #17	ENSGT00900000143551	ENSGT00940000159089 #18	ENSGT00940000159801.B #19	ENSGT00390000005605 #20	ENSGT00530000063000.a.a.b #21	ENSGT01050000244887.A.a.a.a #22	ENSGT00940000159543 #23	ENSGT00940000159788.b #24	ENSGT00390000013443.c #25	ENSGT00940000159869 #26	ENSGT00940000159005 #27	ENSGT00940000160550 #28	ENSGT00940000161143 #29	ENSGT00470000042444 #30	ENSGT00940000162184 #31	ENSGT00940000162431 #32	ENSGT00940000162311 #33	ENSGT00390000014512 #34	ENSGT01050000244887.A.a.a.b #35	ENSGT00390000005100 #36	ENSGT00510000047802
Laurasiatheria_a	ANCESTRAL SPECIES	19	ENSGT00390000018541 #9	ENSGT00390000010157.b #10	ENSGT00940000160377 #11	ENSGT00390000008862 #12	ENSGT00940000158445 #13	ENSGT00940000155764.C #14	ENSGT00530000063679.B #15	ENSGT00940000156719 #16	ENSGT01100000264612	ENSGT00940000158178 #17	ENSGT00900000143551	ENSGT00940000159089 #18	ENSGT00940000159801.B #19	ENSGT00390000005605 #20	ENSGT00530000063000.a.a.b #21	ENSGT01050000244887.A.a.a.a #22	ENSGT00940000159543 #23	ENSGT00940000159788.b #24	ENSGT00390000013443.c #25	ENSGT00940000159869 #26	ENSGT00940000159005 #27	ENSGT00940000160550 #28	ENSGT00940000161143 #29	ENSGT00470000042444 #30	ENSGT00940000162184 #31	ENSGT00940000162431 #32	ENSGT00940000162311 #33	ENSGT00390000014512 #34	ENSGT01050000244887.A.a.a.b #35	ENSGT00390000005100 #36	ENSGT00510000047802
Artiodactyla	ANCESTRAL SPECIES	22	ENSGT00940000156887 #7	ENSGT00390000018541 #9	ENSGT00390000010157.b #10	ENSGT00940000160377 #11	ENSGT00390000008862 #12	ENSGT00940000158445 #13	ENSGT00940000155764.C #14	ENSGT00530000063679.B #15	ENSGT00940000156719 #16	ENSGT00940000158178 #17	ENSGT00900000143551	ENSGT00940000159089 #18	ENSGT00940000159801.B #19	ENSGT00390000005605 #20	ENSGT00530000063000.a.a.b #21	ENSGT01050000244887.A.a.a.a #22	ENSGT00940000159543 #23	ENSGT00940000159788.b #24	ENSGT00390000013443.c #25	ENSGT00940000159869 #26	ENSGT00940000159005 #27	ENSGT00940000160550 #28	ENSGT00940000161143 #29	ENSGT00470000042444 #30	ENSGT00940000162184 #31	ENSGT00940000162431 #32	ENSGT00940000162311 #33	ENSGT00390000014512 #34	ENSGT01050000244887.A.a.a.b #35	ENSGT00390000005100 #36	ENSGT00510000047802
Artiodactyla_a	ANCESTRAL SPECIES	23	ENSGT00940000156887 #7	ENSGT00390000018541 #9	ENSGT00390000010157.b #10	ENSGT00940000160377 #11	ENSGT00390000008862 #12	ENSGT00940000158445 #13	ENSGT00940000155764.C #14	ENSGT00530000063679.B #15	ENSGT00940000156719 #16	ENSGT00940000158178 #17	ENSGT00900000143551	ENSGT00940000159089 #18	ENSGT00940000159801.B #19	ENSGT00390000005605 #20	ENSGT00530000063000.a.a.b #21	ENSGT01050000244887.A.a.a.a #22	ENSGT00940000159543 #23	ENSGT00940000159788.b #24	ENSGT00390000013443.c #25	ENSGT00940000159869 #26	ENSGT00940000159005 #27	ENSGT00940000160550 #28	ENSGT00940000161143 #29	ENSGT00470000042444 #30	ENSGT00940000162184 #31	ENSGT00940000162431 #32	ENSGT00940000162311 #33	ENSGT00390000014512 #34	ENSGT01050000244887.A.a.a.b #35	ENSGT00390000005100 #36	ENSGT00510000047802
Artiodactyla_b	ANCESTRAL SPECIES	23	ENSGT00940000156887 #7	ENSGT00390000018541 #9	ENSGT00390000010157.b #10	ENSGT00940000160377 #11	ENSGT00390000008862 #12	ENSGT00940000158445 #13	ENSGT00940000155764.C #14	ENSGT00530000063679.B #15	ENSGT00940000156719 #16	ENSGT00940000158178 #17	ENSGT00900000143551	ENSGT00940000159089 #18	ENSGT00940000159801.B #19	ENSGT00390000005605 #20	ENSGT00530000063000.a.a.b #21	ENSGT01050000244887.A.a.a.a #22	ENSGT00940000159543 #23	ENSGT00940000159788.b #24	ENSGT00390000013443.c #25	ENSGT00940000159869 #26	ENSGT00940000159005 #27	ENSGT00940000160550 #28	ENSGT00940000161143 #29	ENSGT00470000042444 #30	ENSGT00940000162184 #31	ENSGT00940000162431 #32	ENSGT00940000162311 #33	ENSGT00390000014512 #34	ENSGT01050000244887.A.a.a.b #35	ENSGT00390000005100 #36	ENSGT00510000047802
Cetacea	ANCESTRAL SPECIES	1	ENSGT00940000155653.b.bb.b #8	ENSGT00390000018541 #9	ENSGT00390000010157.b #10	ENSGT00940000160377 #11	ENSGT00390000008862 #12	ENSGT00940000158445 #13	ENSGT00940000155764.C #14	ENSGT00530000063679.B #15	ENSGT00940000156719 #16	ENSGT00940000158178 #17	ENSGT00900000143551	ENSGT00940000159089 #18	ENSGT00940000159801.B #19	ENSGT00390000005605 #20	ENSGT00530000063000.a.a.b #21	ENSGT01050000244887.A.a.a.a #22	ENSGT00940000159543 #23	ENSGT00940000159788.b #24	ENSGT00390000013443.c #25	ENSGT00940000159869 #26	ENSGT00940000159005 #27	ENSGT00940000160550 #28	ENSGT00940000161143 #29	ENSGT00470000042444 #30	ENSGT00940000162184 #31	ENSGT00940000162431 #32	ENSGT00940000162311 #33	ENSGT00390000014512 #34	ENSGT01050000244887.A.a.a.b #35	ENSGT00390000005100 #36	ENSGT00510000047802
Odontoceti	ANCESTRAL SPECIES	1	ENSGT00940000155653.b.bb.b #8	ENSGT00390000018541 #9	ENSGT00390000010157.b #10	ENSGT00940000160377 #11	ENSGT00390000008862 #12	ENSGT00940000158445 #13	ENSGT00940000155764.C #14	ENSGT00530000063679.B #15	ENSGT00940000156719 #16	ENSGT00940000158178 #17	ENSGT00900000143551	ENSGT00940000159089 #18	ENSGT00940000159801.B #19	ENSGT00390000005605 #20	ENSGT00530000063000.a.a.b #21	ENSGT01050000244887.A.a.a.a #22	ENSGT00940000159543 #23	ENSGT00940000159788.b #24	ENSGT00390000013443.c #25	ENSGT00940000159869 #26	ENSGT00940000159005 #27	ENSGT00940000160550 #28	ENSGT00940000161143 #29	ENSGT00470000042444 #30	ENSGT00940000162184 #31	ENSGT00940000162431 #32	ENSGT00940000162311 #33	ENSGT00390000014512 #34	ENSGT01050000244887.A.a.a.b #35	ENSGT00390000005100 #36	ENSGT00510000047802
Odontoceti_a	ANCESTRAL SPECIES	1	ENSGT00940000156887 #7	ENSGT00940000155653.b.bb.b #8	ENSGT00390000018541 #9	ENSGT00390000010157.b #10	ENSGT00940000160377 #11	ENSGT00390000008862 #12	ENSGT00940000158445 #13	ENSGT00940000155764.C #14	ENSGT00530000063679.B #15	ENSGT00940000156719 #16	ENSGT00940000158178 #17	ENSGT00940000159089 #18	ENSGT00940000159801.B #19	ENSGT00390000005605 #20	ENSGT00530000063000.a.a.b #21	ENSGT01050000244887.A.a.a.a #22	ENSGT00940000159543 #23	ENSGT00940000159788.b #24	ENSGT00390000013443.c #25	ENSGT00940000159869 #26	ENSGT00940000159005 #27	ENSGT00940000160550 #28	ENSGT00940000161143 #29	ENSGT00470000042444 #30	ENSGT00940000162184 #31	ENSGT00940000162431 #32	ENSGT00940000162311 #33	ENSGT00390000014512 #34	ENSGT01050000244887.A.a.a.b #35	ENSGT00390000005100 #36	ENSGT00510000047802
Odontoceti_b	ANCESTRAL SPECIES	1	ENSGT00940000156887 #7	ENSGT00940000155653.b.bb.b #8	ENSGT00390000018541 #9	ENSGT00390000010157.b #10	ENSGT00940000160377 #11	ENSGT00390000008862 #12	ENSGT00940000158445 #13	ENSGT00940000155764.C #14	ENSGT00530000063679.B #15	ENSGT00940000156719 #16	ENSGT00940000158178 #17	ENSGT00940000159089 #18	ENSGT00940000159801.B #19	ENSGT00390000005605 #20	ENSGT00530000063000.a.a.b #21	ENSGT01050000244887.A.a.a.a #22	ENSGT00940000159543 #23	ENSGT00940000159788.b #24	ENSGT00390000013443.c #25	ENSGT00940000159869 #26	ENSGT00940000159005 #27	ENSGT00940000160550 #28	ENSGT00940000161143 #29	ENSGT00470000042444 #30	ENSGT00940000162184 #31	ENSGT00940000162431 #32	ENSGT00940000162311 #33	ENSGT00390000014512 #34	ENSGT01050000244887.A.a.a.b #35	ENSGT00390000005100 #36	ENSGT00510000047802
Monodontidae	ANCESTRAL SPECIES	17	ENSGT00940000156887 #7	ENSGT00940000155653.b.bb.b #8	ENSGT00390000018541 #9	ENSGT00390000010157.b #10	ENSGT00940000160377 #11	ENSGT00390000008862 #12	ENSGT00940000158445 #13	ENSGT00940000155764.C #14	ENSGT00530000063679.B #15	ENSGT00940000156719 #16	ENSGT00940000158178 #17	ENSGT00940000159089 #18	ENSGT00940000159801.B #19	ENSGT00390000005605 #20	ENSGT00530000063000.a.a.b #21	ENSGT01050000244887.A.a.a.a #22	ENSGT00940000159543 #23	ENSGT00940000159788.b #24	ENSGT00390000013443.c #25	ENSGT00940000159869 #26	ENSGT00940000159005 #27	ENSGT00940000160550 #28	ENSGT00940000161143 #29	ENSGT00470000042444 #30	ENSGT00940000162184 #31	ENSGT00940000162431 #32	ENSGT00940000162311 #33	ENSGT00390000014512 #34	ENSGT01050000244887.A.a.a.b #35	ENSGT00390000005100 #36	ENSGT00510000047802
Narwhal	MODERN SPECIES	298	SMARCA4 (ENSMMNG00015001717) #7	ENSMMNG00015001640 #8	TIMM29 (ENSMMNG00015001609) #9	YIPF2 (ENSMMNG00015001562) #10	CARM1 (ENSMMNG00015001462) #11	C19orf38 (ENSMMNG00015001399) #12	TMED1 (ENSMMNG00015001368) #13	DNM2 (ENSMMNG00015001292) #14	QTRT1 (ENSMMNG00015001130) #15	ILF3 (ENSMMNG00015001074) #16	SLC44A2 (ENSMMNG00015000973) #17	AP1M2 (ENSMMNG00015000863) #18	CDKN2D (ENSMMNG00015000838) #19	KRI1 (ENSMMNG00015000795) #20	ATG4D (ENSMMNG00015000763) #21	S1PR5 (ENSMMNG00015000744) #22	KEAP1 (ENSMMNG00015000719) #23	PDE4A (ENSMMNG00015000552) #24	CDC37 (ENSMMNG00015000345) #25	TYK2 (ENSMMNG00015000290) #26	ICAM3 (ENSMMNG00015000259) #27	RAVER1 (ENSMMNG00015000152) #28	FDX2 (ENSMMNG00015000085) #29	ENSMMNG00015000055 #30	ICAM5 (ENSMMNG00015021254) #31	ICAM4 (ENSMMNG00015021245) #32	ICAM1 (ENSMMNG00015021230) #33	MRPL4 (ENSMMNG00015021211) #34	S1PR2 (ENSMMNG00015021200) #35	DNMT1 (ENSMMNG00015021181) #36	ENSMMNG00015021161 #37
Beluga whale	MODERN SPECIES	62	SMARCA4 (ENSDLEG00000021692) #7	ENSDLEG00000021713 #8	TIMM29 (ENSDLEG00000021716) #9	YIPF2 (ENSDLEG00000021720) #10	CARM1 (ENSDLEG00000021724) #11	ENSDLEG00000021729	TMED1 (ENSDLEG00000021734) #13	DNM2 (ENSDLEG00000021738) #14	QTRT1 (ENSDLEG00000007761) #15	ILF3 (ENSDLEG00000007764) #16	SLC44A2 (ENSDLEG00000007781) #17	AP1M2 (ENSDLEG00000007808) #18	CDKN2D (ENSDLEG00000007864) #19	KRI1 (ENSDLEG00000007870) #20	ATG4D (ENSDLEG00000007877) #21	S1PR5 (ENSDLEG00000007878) #22	KEAP1 (ENSDLEG00000007880) #23	PDE4A (ENSDLEG00000007886) #24	CDC37 (ENSDLEG00000007897) #25	TYK2 (ENSDLEG00000007981) #26	ICAM3 (ENSDLEG00000008009) #27	RAVER1 (ENSDLEG00000008069) #28	FDX2 (ENSDLEG00000008119) #29	ZGLP1 (ENSDLEG00000008184) #30	ICAM5 (ENSDLEG00000008273) #31	ICAM4 (ENSDLEG00000008412) #32	ICAM1 (ENSDLEG00000008458) #33	MRPL4 (ENSDLEG00000008517) #34	S1PR2 (ENSDLEG00000008556) #35	DNMT1 (ENSDLEG00000008585) #36	ENSDLEG00000008705
Vaquita	MODERN SPECIES	14	ENSPSNG00000000867 #8	TIMM29 (ENSPSNG00000000852) #9	YIPF2 (ENSPSNG00000000829) #10	CARM1 (ENSPSNG00000000745) #11	C19orf38 (ENSPSNG00000000687) #12	ENSPSNG00000000673	TMED1 (ENSPSNG00000000656) #13	DNM2 (ENSPSNG00000000544) #14	QTRT1 (ENSPSNG00000000385) #15	ILF3 (ENSPSNG00000000300) #16	SLC44A2 (ENSPSNG00000000222) #17	AP1M2 (ENSPSNG00000000086) #18	CDKN2D (ENSPSNG00000021264) #19	KRI1 (ENSPSNG00000021232) #20	ATG4D (ENSPSNG00000021190) #21	S1PR5 (ENSPSNG00000021161) #22	KEAP1 (ENSPSNG00000021144) #23	PDE4A (ENSPSNG00000020907) #24	CDC37 (ENSPSNG00000020799) #25	TYK2 (ENSPSNG00000020692) #26	ICAM3 (ENSPSNG00000020411) #27	RAVER1 (ENSPSNG00000020306) #28	FDX2 (ENSPSNG00000020258) #29	ENSPSNG00000020238 #30	ICAM5 (ENSPSNG00000020176) #31	ICAM4 (ENSPSNG00000020128) #32	ICAM1 (ENSPSNG00000020091) #33	MRPL4 (ENSPSNG00000020027) #34	S1PR2 (ENSPSNG00000019997) #35	DNMT1 (ENSPSNG00000019956) #36	ENSPSNG00000019916
Sperm whale	MODERN SPECIES	78										SLC44A2 (ENSPCTG00005014970) #17	ENSPCTG00005015109	AP1M2 (ENSPCTG00005015228) #18	CDKN2D (ENSPCTG00005015270) #19	KRI1 (ENSPCTG00005015315) #20	ATG4D (ENSPCTG00005015372) #21	S1PR5 (ENSPCTG00005015527) #22	KEAP1 (ENSPCTG00005015546) #23
Blue whale	MODERN SPECIES	14	SMARCA4 (ENSBMSG00010010730) #7	ENSBMSG00010010816 #8	TIMM29 (ENSBMSG00010010845) #9	YIPF2 (ENSBMSG00010010869) #10	CARM1 (ENSBMSG00010010948) #11	C19orf38 (ENSBMSG00010011004) #12	TMED1 (ENSBMSG00010011020) #13	DNM2 (ENSBMSG00010011050) #14	QTRT1 (ENSBMSG00010011150) #15	ILF3 (ENSBMSG00010011185) #16	SLC44A2 (ENSBMSG00010011271) #17	AP1M2 (ENSBMSG00010011325) #18	CDKN2D (ENSBMSG00010011355) #19	KRI1 (ENSBMSG00010011370) #20	ATG4D (ENSBMSG00010011422) #21	S1PR5 (ENSBMSG00010011450) #22	KEAP1 (ENSBMSG00010011463) #23	PDE4A (ENSBMSG00010011522) #24	CDC37 (ENSBMSG00010011605) #25	TYK2 (ENSBMSG00010011619) #26	ENSBMSG00010011643 #33	RAVER1 (ENSBMSG00010011661) #28	FDX2 (ENSBMSG00010011705) #29	ENSBMSG00010011722 #30	ICAM5 (ENSBMSG00010011788) #31	ICAM4 (ENSBMSG00010011803) #32	ICAM1 (ENSBMSG00010011829) #33	MRPL4 (ENSBMSG00010011859) #34	S1PR2 (ENSBMSG00010011881) #35	DNMT1 (ENSBMSG00010011892) #36	EIF3G (ENSBMSG00010011917)
Pecora	ANCESTRAL SPECIES		ENSGT00940000161046	ENSGT00940000156887 #7	ENSGT00390000018541 #9	ENSGT00390000010157.b #10	ENSGT00940000160377 #11	ENSGT00390000008862 #12	ENSGT00940000158445 #13	ENSGT00940000155764.C #14	ENSGT00530000063679.B #15	ENSGT00940000156719 #16	ENSGT00940000158178 #17	ENSGT00940000159089 #18	ENSGT00940000159801.B #19	ENSGT00390000005605 #20	ENSGT00530000063000.a.a.b #21	ENSGT01050000244887.A.a.a.a #22	ENSGT00940000159543 #23	ENSGT00940000159788.b #24	ENSGT00390000013443.c #25	ENSGT00940000159869 #26	ENSGT00940000159005 #27	ENSGT00940000160550 #28	ENSGT00940000161143 #29	ENSGT00470000042444 #30	ENSGT00940000162184 #31	ENSGT00940000162431 #32	ENSGT00940000162311.c.a #33	ENSGT00390000014512 #34	ENSGT01050000244887.A.a.a.b #35	ENSGT00390000005100 #36	ENSGT00510000047802
Percora_a	ANCESTRAL SPECIES		ENSGT00940000156887 #7	ENSGT00390000018541 #9	ENSGT00390000010157.b #10	ENSGT00940000160377 #11	ENSGT00390000008862 #12	ENSGT00940000158445 #13	ENSGT00940000155764.C #14	ENSGT00530000063679.B #15	ENSGT00940000156719 #16	ENSGT00940000158178 #17	ENSGT00940000159089 #18	ENSGT00940000159801.B #19	ENSGT00390000005605 #20	ENSGT00530000063000.a.a.b #21	ENSGT00390000003710.d.c.b.b	ENSGT01050000244887.A.a.a.a #22	ENSGT00940000159543 #23	ENSGT00940000159788.b #24	ENSGT00390000013443.c #25	ENSGT00940000159869 #26	ENSGT00940000159005 #27	ENSGT00940000160550 #28	ENSGT00940000161143 #29	ENSGT00470000042444 #30	ENSGT00940000162184 #31	ENSGT00940000162431 #32	ENSGT00940000162311.c.a #33	ENSGT00940000162311.c.b #33	ENSGT00390000014512 #34	ENSGT01050000244887.A.a.a.b #35	ENSGT00390000005100 #36
Bovidae	ANCESTRAL SPECIES		ENSGT00940000156887 #7	ENSGT00390000018541 #9	ENSGT00390000010157.b #10	ENSGT00940000160377 #11	ENSGT00390000008862 #12	ENSGT00940000158445 #13	ENSGT00940000155764.C #14	ENSGT00530000063679.B #15	ENSGT00940000156719 #16	ENSGT00940000158178 #17	ENSGT00940000159089 #18	ENSGT00940000159801.B #19	ENSGT00390000005605 #20	ENSGT00530000063000.a.a.b #21	ENSGT00390000003710.d.c.b.b	ENSGT01050000244887.A.a.a.a #22	ENSGT00940000159543 #23	ENSGT00940000159788.b #24	ENSGT00390000013443.c #25	ENSGT00940000159869 #26	ENSGT00940000159005 #27	ENSGT00940000160550 #28	ENSGT00940000161143 #29	ENSGT00470000042444 #30	ENSGT00940000162184 #31	ENSGT00940000162431 #32	ENSGT00940000162311.c.a #33	ENSGT00940000162311.c.b #33	ENSGT00390000014512 #34	ENSGT01050000244887.A.a.a.b #35	ENSGT00390000005100 #36
Caprinae	ANCESTRAL SPECIES	3	ENSGT00940000161046	ENSGT00940000156887 #7	ENSGT00390000018541.m #9	ENSGT00390000010157.b #10	ENSGT00940000160377 #11	ENSGT00390000008862 #12	ENSGT00940000158445 #13	ENSGT00940000155764.C #14	ENSGT00530000063679.B #15	ENSGT00940000156719 #16	ENSGT00940000158178 #17	ENSGT00940000159089 #18	ENSGT00940000159801.B #19	ENSGT00390000005605 #20	ENSGT00530000063000.a.a.b #21	ENSGT01050000244887.A.a.a.a #22	ENSGT00940000159543 #23	ENSGT00940000159788.b #24	ENSGT00390000013443.c #25	ENSGT00940000159869 #26	ENSGT00940000159005 #27	ENSGT00940000160550 #28	ENSGT00940000161143 #29	ENSGT00470000042444 #30	ENSGT00940000162184 #31	ENSGT00940000162431 #32	ENSGT00940000162311.c.a #33	ENSGT00390000014512 #34	ENSGT01050000244887.A.a.a.b #35	ENSGT00390000005100 #36	ENSGT00510000047802
Rambouillet Sheep	MODERN SPECIES	21	LDLR (ENSOARG00020007651)	SMARCA4 (ENSOARG00020007539) #7	TIMM29 (ENSOARG00020007507) #9	YIPF2 (ENSOARG00020007419) #10	CARM1 (ENSOARG00020007076) #11	C19orf38 (ENSOARG00020006962) #12	TMED1 (ENSOARG00020006915) #13	DNM2 (ENSOARG00020006664) #14	QTRT1 (ENSOARG00020006553) #15	ILF3 (ENSOARG00020005811) #16	ENSOARG00020005505 #17	AP1M2 (ENSOARG00020005364) #18	CDKN2D (ENSOARG00020005338) #19	KRI1 (ENSOARG00020005100) #20	ATG4D (ENSOARG00020005015) #21	S1PR5 (ENSOARG00020004996) #22	KEAP1 (ENSOARG00020004964) #23	PDE4A (ENSOARG00020004490) #24	CDC37 (ENSOARG00020004409) #25	TYK2 (ENSOARG00020004293) #26	ICAM3 (ENSOARG00020004268) #27	RAVER1 (ENSOARG00020004220) #28	FDX2 (ENSOARG00020004158) #29	ENSOARG00020004133 #30	ICAM5 (ENSOARG00020004084) #31	ICAM4 (ENSOARG00020004056) #32	ICAM1 (ENSOARG00020003991) #33	MRPL4 (ENSOARG00020003926) #34	S1PR2 (ENSOARG00020003905) #35	DNMT1 (ENSOARG00020003738) #36	EIF3G (ENSOARG00020003676)
Goat	MODERN SPECIES	26	ENSCHIG00000008021 #9	YIPF2 (ENSCHIG00000017268) #10	CARM1 (ENSCHIG00000008507) #11	C19orf38 (ENSCHIG00000016641) #12	TMED1 (ENSCHIG00000026595) #13	DNM2 (ENSCHIG00000025917) #14	QTRT1 (ENSCHIG00000014137) #15	ILF3 (ENSCHIG00000024731) #16	SLC44A2 (ENSCHIG00000005817) #17	ENSCHIG00000008328	AP1M2 (ENSCHIG00000013386) #18	CDKN2D (ENSCHIG00000019940) #19	KRI1 (ENSCHIG00000011851) #20	ATG4D (ENSCHIG00000017777) #21	ENSCHIG00000018242	S1PR5 (ENSCHIG00000013199) #22	KEAP1 (ENSCHIG00000012093) #23	PDE4A (ENSCHIG00000020219) #24	CDC37 (ENSCHIG00000000718) #25	ENSCHIG00000000917	TYK2 (ENSCHIG00000018652) #26	ICAM3 (ENSCHIG00000008833) #27	RAVER1 (ENSCHIG00000006718) #28	FDX2 (ENSCHIG00000026261) #29	ZGLP1 (ENSCHIG00000017287) #30	ICAM5 (ENSCHIG00000024600) #31	ICAM4 (ENSCHIG00000006891) #32	ICAM1 (ENSCHIG00000015941) #33	MRPL4 (ENSCHIG00000000516) #34	S1PR2 (ENSCHIG00000010178) #35	DNMT1 (ENSCHIG00000023294) #36
Bovinae	ANCESTRAL SPECIES	2	ENSGT00940000156887 #7	ENSGT00390000018541 #9	ENSGT00390000010157.b #10	ENSGT00940000160377 #11	ENSGT00390000008862 #12	ENSGT00940000158445 #13	ENSGT00940000155764.C #14	ENSGT00530000063679.B #15	ENSGT00940000156719 #16	ENSGT00940000158178 #17	ENSGT00940000159089 #18	ENSGT00940000159801.B #19	ENSGT00390000005605 #20	ENSGT00530000063000.a.a.b #21	ENSGT00390000003710.d.c.b.b	ENSGT01050000244887.A.a.a.a #22	ENSGT00940000159543 #23	ENSGT00940000159788.b #24	ENSGT00390000013443.c #25	ENSGT00940000159869 #26	ENSGT00940000159005 #27	ENSGT00940000160550 #28	ENSGT00940000161143 #29	ENSGT00470000042444 #30	ENSGT00940000162184 #31	ENSGT00940000162431 #32	ENSGT00940000162311.c.a #33	ENSGT00940000162311.c.b #33	ENSGT00390000014512 #34	ENSGT01050000244887.A.a.a.b #35	ENSGT00390000005100 #36
Bos	ANCESTRAL SPECIES	3	ENSGT00940000156887 #7	ENSGT00390000018541 #9	ENSGT00390000010157.b #10	ENSGT00940000160377 #11	ENSGT00390000008862 #12	ENSGT00940000158445 #13	ENSGT00940000155764.C #14	ENSGT00530000063679.B #15	ENSGT00940000156719 #16	ENSGT00940000158178 #17	ENSGT00940000159089 #18	ENSGT00940000159801.B #19	ENSGT00390000005605 #20	ENSGT00530000063000.a.a.b #21	ENSGT00390000003710.d.c.b.b	ENSGT01050000244887.A.a.a.a #22	ENSGT00940000159543 #23	ENSGT00940000159788.b #24	ENSGT00390000013443.c #25	ENSGT00940000159869 #26	ENSGT00940000159005 #27	ENSGT00940000160550 #28	ENSGT00940000161143 #29	ENSGT00470000042444 #30	ENSGT00940000162184 #31	ENSGT00940000162431 #32	ENSGT00940000162311.c.a #33	ENSGT00940000162311.c.b #33	ENSGT00390000014512 #34	ENSGT01050000244887.A.a.a.b #35	ENSGT00390000005100 #36
Bos_b	ANCESTRAL SPECIES	2	ENSGT00940000156887 #7	ENSGT00390000018541 #9	ENSGT00390000010157.b #10	ENSGT00940000160377 #11	ENSGT00390000008862 #12	ENSGT00940000158445 #13	ENSGT00940000155764.C #14	ENSGT00530000063679.B #15	ENSGT00940000156719 #16	ENSGT00940000158178 #17	ENSGT00940000159089 #18	ENSGT00940000159801.B #19	ENSGT00390000005605 #20	ENSGT00530000063000.a.a.b #21	ENSGT00390000003710.d.c.b.b	ENSGT01050000244887.A.a.a.a #22	ENSGT00940000159543 #23	ENSGT00940000159788.b #24	ENSGT00390000013443.c #25	ENSGT00940000159869 #26	ENSGT00940000159005 #27	ENSGT00940000160550 #28	ENSGT00940000161143 #29	ENSGT00470000042444 #30	ENSGT00940000162184 #31	ENSGT00940000162431 #32	ENSGT00940000162311.c.a #33	ENSGT00940000162311.c.b #33	ENSGT00940000162311.d #33	ENSGT00950000185283	ENSGT00390000014512 #34
Hybrid Bos Indicus	MODERN SPECIES	26	SMARCA4 (ENSBIXG00005028150) #7	TIMM29 (ENSBIXG00005004808) #9	YIPF2 (ENSBIXG00005027965) #10	CARM1 (ENSBIXG00005004797) #11	C19orf38 (ENSBIXG00005006957) #12	TMED1 (ENSBIXG00005027829) #13	DNM2 (ENSBIXG00005027715) #14	QTRT1 (ENSBIXG00005027486) #15	ILF3 (ENSBIXG00005027423) #16	SLC44A2 (ENSBIXG00005027228) #17	AP1M2 (ENSBIXG00005027157) #18	CDKN2D (ENSBIXG00005027099) #19	KRI1 (ENSBIXG00005027063) #20	ATG4D (ENSBIXG00005004641) #21	ENSBIXG00005027013	S1PR5 (ENSBIXG00005026991) #22	KEAP1 (ENSBIXG00005026956) #23	PDE4A (ENSBIXG00005026880) #24	CDC37 (ENSBIXG00005026794) #25	TYK2 (ENSBIXG00005004567) #26	ICAM3 (ENSBIXG00005026686) #27	RAVER1 (ENSBIXG00005026635) #28	FDX2 (ENSBIXG00005026494) #29	ZGLP1 (ENSBIXG00005007249) #30	ICAM5 (ENSBIXG00005026475) #31	ICAM4 (ENSBIXG00005026456) #32	ENSBIXG00005026437 #33	ENSBIXG00005026424 #33	MRPL4 (ENSBIXG00005026363) #34	S1PR2 (ENSBIXG00005002546) #35	DNMT1 (ENSBIXG00005026225) #36
Cow	MODERN SPECIES	26	TIMM29 (ENSBTAG00000045893) #9	YIPF2 (ENSBTAG00000025606) #10	CARM1 (ENSBTAG00000012048) #11	C7H19orf38 (ENSBTAG00000004224) #12	TMED1 (ENSBTAG00000010968) #13	DNM2 (ENSBTAG00000013362) #14	QTRT1 (ENSBTAG00000037941) #15	ENSBTAG00000051140	ILF3 (ENSBTAG00000040076) #16	SLC44A2 (ENSBTAG00000002628) #17	AP1M2 (ENSBTAG00000021160) #18	CDKN2D (ENSBTAG00000010731) #19	KRI1 (ENSBTAG00000010729) #20	ATG4D (ENSBTAG00000010727) #21	ENSBTAG00000051490	S1PR5 (ENSBTAG00000003544) #22	KEAP1 (ENSBTAG00000003543) #23	PDE4A (ENSBTAG00000012032) #24	CDC37 (ENSBTAG00000011699) #25	TYK2 (ENSBTAG00000011698) #26	ICAM3 (ENSBTAG00000015742) #27	RAVER1 (ENSBTAG00000015721) #28	FDX2 (ENSBTAG00000010318) #29	ZGLP1 (ENSBTAG00000038976) #30	ICAM5 (ENSBTAG00000010316) #31	ICAM4 (ENSBTAG00000010314) #32	ICAM1 (ENSBTAG00000010303) #33	ENSBTAG00000049560 #33	ENSBTAG00000053933 #33	MRPL4 (ENSBTAG00000001419)	S1PR2 (ENSBTAG00000002738) #35
Bos_a	ANCESTRAL SPECIES	2	ENSGT00940000156887 #7	ENSGT00390000018541 #9	ENSGT00390000010157.b #10	ENSGT00940000160377 #11	ENSGT00390000008862 #12	ENSGT00940000158445 #13	ENSGT00940000155764.C #14	ENSGT00530000063679.B #15	ENSGT00940000156719 #16	ENSGT00940000158178 #17	ENSGT00940000159089 #18	ENSGT00940000159801.B #19	ENSGT00390000005605 #20	ENSGT00530000063000.a.a.b #21	ENSGT00390000003710.d.c.b.b	ENSGT01050000244887.A.a.a.a #22	ENSGT00940000159543 #23	ENSGT00940000159788.b #24	ENSGT00390000013443.c #25	ENSGT00940000159869 #26	ENSGT00940000159005 #27	ENSGT00940000160550 #28	ENSGT00940000161143 #29	ENSGT00470000042444 #30	ENSGT00940000162184 #31	ENSGT00940000162431 #32	ENSGT00940000162311.c.a #33	ENSGT00390000014512 #34	ENSGT01050000244887.A.a.a.b #35	ENSGT00390000005100 #36	ENSGT00510000047802.p
Wild yak	MODERN SPECIES	347	SMARCA4 (ENSBMUG00000001526) #7	TIMM29 (ENSBMUG00000002186) #9	YIPF2 (ENSBMUG00000002282) #10	CARM1 (ENSBMUG00000003201) #11	C19orf38 (ENSBMUG00000003745) #12	TMED1 (ENSBMUG00000003776) #13	DNM2 (ENSBMUG00000003859) #14	QTRT1 (ENSBMUG00000003900) #15	ILF3 (ENSBMUG00000004135) #16	SLC44A2 (ENSBMUG00000004323) #17	AP1M2 (ENSBMUG00000004367) #18	CDKN2D (ENSBMUG00000004379) #19	KRI1 (ENSBMUG00000004481) #20	ATG4D (ENSBMUG00000004558) #21	ENSBMUG00000004581	S1PR5 (ENSBMUG00000004599) #22
Domestic yak	MODERN SPECIES	27	SMARCA4 (ENSBGRG00000005725) #7	TIMM29 (ENSBGRG00000005681) #9	YIPF2 (ENSBGRG00000005541) #10	CARM1 (ENSBGRG00000005309) #11	C19orf38 (ENSBGRG00000005246) #12	TMED1 (ENSBGRG00000005206) #13	DNM2 (ENSBGRG00000004270) #14	QTRT1 (ENSBGRG00000004106) #15	ILF3 (ENSBGRG00000003981) #16	SLC44A2 (ENSBGRG00000003649) #17	AP1M2 (ENSBGRG00000003553) #18	CDKN2D (ENSBGRG00000003538) #19	KRI1 (ENSBGRG00000003495) #20	ATG4D (ENSBGRG00000003396) #21	ENSBGRG00000003351	S1PR5 (ENSBGRG00000003343) #22	ENSBGRG00000003338 #23	PDE4A (ENSBGRG00000003241) #24	CDC37 (ENSBGRG00000003152) #25	TYK2 (ENSBGRG00000003025) #26	ICAM3 (ENSBGRG00000002967) #27	RAVER1 (ENSBGRG00000002843) #28	FDX2 (ENSBGRG00000002821) #29	ZGLP1 (ENSBGRG00000002807) #30	ICAM5 (ENSBGRG00000002740) #31	ICAM4 (ENSBGRG00000002716) #32	ENSBGRG00000002625 #33	MRPL4 (ENSBGRG00000002458) #34	S1PR2 (ENSBGRG00000002416) #35	DNMT1 (ENSBGRG00000002388) #36	EIF3G (ENSBGRG00000002308)
American bison	MODERN SPECIES	3349	LDLR (ENSBBBG00000017534)	SMARCA4 (ENSBBBG00000017202) #7	YIPF2 (ENSBBBG00000000756) #10	CARM1 (ENSBBBG00000016525) #11	C19orf38 (ENSBBBG00000004061) #12	TMED1 (ENSBBBG00000004053) #13	DNM2 (ENSBBBG00000016364) #14	QTRT1 (ENSBBBG00000016137) #15	ILF3 (ENSBBBG00000016084) #16	SLC44A2 (ENSBBBG00000015812) #17	AP1M2 (ENSBBBG00000015730) #18	CDKN2D (ENSBBBG00000015703) #19	KRI1 (ENSBBBG00000015696) #20	ATG4D (ENSBBBG00000015641) #21	ENSBBBG00000003902	S1PR5 (ENSBBBG00000003420) #22	KEAP1 (ENSBBBG00000003432) #23	PDE4A (ENSBBBG00000003458) #24	CDC37 (ENSBBBG00000003882) #25	TYK2 (ENSBBBG00000003878) #26	ICAM3 (ENSBBBG00000015517) #27	RAVER1 (ENSBBBG00000015499) #28	FDX2 (ENSBBBG00000015465) #29	ENSBBBG00000015460 #30	ICAM5 (ENSBBBG00000003849) #31	ICAM4 (ENSBBBG00000003843) #32	ICAM1 (ENSBBBG00000015412) #33	MRPL4 (ENSBBBG00000015394) #34	S1PR2 (ENSBBBG00000015343) #35	DNMT1 (ENSBBBG00000003484) #36	EIF3G (ENSBBBG00000001326)
Siberian musk deer	MODERN SPECIES	1187									ENSMMSG00000015502	ENSMMSG00000015463	ENSMMSG00000015425 #18	CDKN2D (ENSMMSG00000015413) #19	KRI1 (ENSMMSG00000015359) #20	ATG4D (ENSMMSG00000015299) #21	ENSMMSG00000015283	S1PR5 (ENSMMSG00000015275) #22	KEAP1 (ENSMMSG00000015254) #23	PDE4A (ENSMMSG00000015222) #24	CDC37 (ENSMMSG00000015195) #25
Yarkand deer	MODERN SPECIES	32	LDLR (ENSCHYG00000003225)	ENSCHYG00000003084	SMARCA4 (ENSCHYG00000003001) #7	ENSCHYG00000002972 #9	YIPF2 (ENSCHYG00000002943) #10	CARM1 (ENSCHYG00000002834) #11	C19orf38 (ENSCHYG00000002801) #12	TMED1 (ENSCHYG00000002770) #13	DNM2 (ENSCHYG00000002577) #14	ILF3 (ENSCHYG00000002410) #16	SLC44A2 (ENSCHYG00000002236) #17	AP1M2 (ENSCHYG00000002197) #18	CDKN2D (ENSCHYG00000002191) #19	KRI1 (ENSCHYG00000002126) #20	ATG4D (ENSCHYG00000002100) #21	S1PR5 (ENSCHYG00000002028) #22	KEAP1 (ENSCHYG00000002009) #23	PDE4A (ENSCHYG00000001936) #24	ENSCHYG00000001887 #25	TYK2 (ENSCHYG00000001767) #26	ICAM3 (ENSCHYG00000001683) #27	RAVER1 (ENSCHYG00000001635) #28	FDX2 (ENSCHYG00000001580) #29	ZGLP1 (ENSCHYG00000001560) #30	ICAM5 (ENSCHYG00000001528) #31	ICAM4 (ENSCHYG00000001512) #32	ENSCHYG00000001506 #33	MRPL4 (ENSCHYG00000001481) #34	S1PR2 (ENSCHYG00000001459) #35	DNMT1 (ENSCHYG00000001426) #36	EIF3G (ENSCHYG00000001385)
Camelidae	ANCESTRAL SPECIES	61	ENSGT00390000005584	ENSGT00940000161046	ENSGT00940000156887 #7	ENSGT00390000018541 #9	ENSGT00390000010157.b #10	ENSGT00940000160377 #11	ENSGT00390000008862 #12	ENSGT00940000158445 #13	ENSGT00940000155764.C #14	ENSGT00530000063679.B #15	ENSGT00940000156719 #16	ENSGT00940000158178 #17	ENSGT00940000159089 #18	ENSGT00940000159801.B #19	ENSGT00530000063000.a.a.b #21	ENSGT01050000244887.A.a.a.a #22	ENSGT00940000159543 #23	ENSGT00940000159788.b #24	ENSGT00390000013443.c #25	ENSGT00940000159869 #26	ENSGT00940000159005 #27	ENSGT00940000160550 #28	ENSGT00940000161143 #29	ENSGT00470000042444 #30	ENSGT00940000162184 #31	ENSGT00940000162431 #32	ENSGT00940000162311 #33	ENSGT00390000014512 #34	ENSGT01050000244887.A.a.a.b #35	ENSGT00390000005100 #36	ENSGT00510000047802
Arabian camel	MODERN SPECIES	14	SPC24 (ENSCDRG00005011442)	LDLR (ENSCDRG00005010935)	SMARCA4 (ENSCDRG00005010495) #7	TIMM29 (ENSCDRG00005010442) #9	YIPF2 (ENSCDRG00005010339) #10	CARM1 (ENSCDRG00005009567) #11	C19orf38 (ENSCDRG00005009399) #12	TMED1 (ENSCDRG00005009300) #13	DNM2 (ENSCDRG00005008985) #14	QTRT1 (ENSCDRG00005008893) #15	ILF3 (ENSCDRG00005008623) #16	SLC44A2 (ENSCDRG00005007784) #17	ENSCDRG00005007581 #18	CDKN2D (ENSCDRG00005007540) #19	ATG4D (ENSCDRG00005007407) #21	S1PR5 (ENSCDRG00005007394) #22	KEAP1 (ENSCDRG00005007359) #23	PDE4A (ENSCDRG00005007237) #24	CDC37 (ENSCDRG00005007169) #25	TYK2 (ENSCDRG00005007070) #26	ICAM3 (ENSCDRG00005007018) #27	RAVER1 (ENSCDRG00005006900) #28	FDX2 (ENSCDRG00005006823) #29	ENSCDRG00005006783 #30	ICAM5 (ENSCDRG00005006746) #31	ICAM4 (ENSCDRG00005006691) #32	ICAM1 (ENSCDRG00005006651) #33	MRPL4 (ENSCDRG00005006515) #34	S1PR2 (ENSCDRG00005006497) #35	DNMT1 (ENSCDRG00005006428) #36	EIF3G (ENSCDRG00005006325)
Suina	ANCESTRAL SPECIES	16	ENSGT00940000161046	ENSGT00940000156887 #7	ENSGT00390000018541 #9	ENSGT00390000010157.b #10	ENSGT00940000160377 #11	ENSGT00390000008862 #12	ENSGT00940000158445 #13	ENSGT00940000155764.C #14	ENSGT00530000063679.B #15	ENSGT00940000156719 #16	ENSGT00940000158178 #17	ENSGT00940000159089 #18	ENSGT00940000159801.B #19	ENSGT00390000005605 #20	ENSGT00530000063000.a.a.b #21	ENSGT01050000244887.A.a.a.a #22	ENSGT00940000159543 #23	ENSGT00940000159788.b #24	ENSGT00390000013443.c #25	ENSGT00940000159869 #26	ENSGT00940000159005 #27	ENSGT00940000160550 #28	ENSGT00940000161143 #29	ENSGT00470000042444 #30	ENSGT00940000162184 #31	ENSGT00940000162431 #32	ENSGT00940000162311 #33	ENSGT00390000014512 #34	ENSGT01050000244887.A.a.a.b #35	ENSGT00390000005100 #36	ENSGT00510000047802
Chacoan peccary	MODERN SPECIES	770	LDLR (ENSCWAG00000019244)	SMARCA4 (ENSCWAG00000019349) #7	TIMM29 (ENSCWAG00000019409) #9	YIPF2 (ENSCWAG00000019426) #10	CARM1 (ENSCWAG00000019487) #11	C19orf38 (ENSCWAG00000019636) #12	TMED1 (ENSCWAG00000019663) #13	DNM2 (ENSCWAG00000019692) #14	QTRT1 (ENSCWAG00000019852) #15	ILF3 (ENSCWAG00000019885) #16	SLC44A2 (ENSCWAG00000019968) #17	AP1M2 (ENSCWAG00000020120) #18	CDKN2D (ENSCWAG00000020167) #19	KRI1 (ENSCWAG00000003660) #20	ATG4D (ENSCWAG00000003684) #21	S1PR5 (ENSCWAG00000003701) #22	KEAP1 (ENSCWAG00000003719) #23	PDE4A (ENSCWAG00000003784) #24	CDC37 (ENSCWAG00000004120) #25	TYK2 (ENSCWAG00000004159) #26	ENSCWAG00000004200 #27	RAVER1 (ENSCWAG00000004238) #28	FDX2 (ENSCWAG00000004322) #29	ENSCWAG00000004336 #30	ICAM5 (ENSCWAG00000004370) #31	ICAM4 (ENSCWAG00000004447) #32	ICAM1 (ENSCWAG00000004470) #33	MRPL4 (ENSCWAG00000004503) #34	S1PR2 (ENSCWAG00000004569) #35	DNMT1 (ENSCWAG00000004600) #36	EIF3G (ENSCWAG00000004694)
Pig	MODERN SPECIES	10	LDLR (ENSSSCG00000028512)	SMARCA4 (ENSSSCG00000013629) #7	TIMM29 (ENSSSCG00000013635) #9	YIPF2 (ENSSSCG00000013634) #10	CARM1 (ENSSSCG00000013633) #11	C19orf38 (ENSSSCG00000013632) #12	TMED1 (ENSSSCG00000038623) #13	DNM2 (ENSSSCG00000013630) #14	QTRT1 (ENSSSCG00000013637) #15	ILF3 (ENSSSCG00000013638) #16	SLC44A2 (ENSSSCG00000013639) #17	AP1M2 (ENSSSCG00000025838) #18	CDKN2D (ENSSSCG00000013643) #19	KRI1 (ENSSSCG00000013644) #20	ATG4D (ENSSSCG00000013645) #21	S1PR5 (ENSSSCG00000028460) #22	KEAP1 (ENSSSCG00000023667) #23	PDE4A (ENSSSCG00000013642) #24	CDC37 (ENSSSCG00000013647) #25	TYK2 (ENSSSCG00000013648) #26	ICAM3 (ENSSSCG00000013649) #27	RAVER1 (ENSSSCG00000013650) #28	FDX2 (ENSSSCG00000062738) #29	ZGLP1 (ENSSSCG00000025754) #30	ICAM5 (ENSSSCG00000013653) #31	ICAM4 (ENSSSCG00000013654) #32	ICAM1 (ENSSSCG00000013655) #33	MRPL4 (ENSSSCG00000013656) #34	S1PR2 (ENSSSCG00000013658) #35	DNMT1 (ENSSSCG00000013659) #36	EIF3G (ENSSSCG00000013661)
Laurasiatheria_b	ANCESTRAL SPECIES	18	ENSGT00390000018541 #9	ENSGT00390000010157.b #10	ENSGT00940000160377 #11	ENSGT00390000008862 #12	ENSGT00940000158445 #13	ENSGT00940000155764.C #14	ENSGT00530000063679.B #15	ENSGT00940000156719 #16	ENSGT01100000264612	ENSGT00940000158178 #17	ENSGT00900000143551	ENSGT00940000159089 #18	ENSGT00940000159801.B #19	ENSGT00390000005605 #20	ENSGT00530000063000.a.a.b #21	ENSGT01050000244887.A.a.a.a #22	ENSGT00940000159543 #23	ENSGT00940000159788.b #24	ENSGT00390000013443.c #25	ENSGT00940000159869 #26	ENSGT00940000159005 #27	ENSGT00940000160550 #28	ENSGT00940000161143 #29	ENSGT00470000042444 #30	ENSGT00940000162184 #31	ENSGT00940000162431 #32	ENSGT00940000162311 #33	ENSGT00390000014512 #34	ENSGT01050000244887.A.a.a.b #35	ENSGT00390000005100 #36	ENSGT00510000047802
Carnivora	ANCESTRAL SPECIES	6	ENSGT00390000018541 #9	ENSGT00390000010157.b #10	ENSGT00940000160377 #11	ENSGT00390000008862 #12	ENSGT00940000158445 #13	ENSGT00940000155764.C #14	ENSGT00530000063679.B #15	ENSGT00940000156719 #16	ENSGT01100000264612	ENSGT00940000158178 #17	ENSGT00900000143551	ENSGT00940000159089 #18	ENSGT00940000159801.B #19	ENSGT00390000005605 #20	ENSGT00530000063000.a.a.b #21	ENSGT01050000244887.A.a.a.a #22	ENSGT00940000159543 #23	ENSGT00940000159788.b #24	ENSGT00390000013443.c #25	ENSGT00940000159869 #26	ENSGT00940000159005 #27	ENSGT00940000160550 #28	ENSGT00940000161143 #29	ENSGT00470000042444 #30	ENSGT00940000162184 #31	ENSGT00940000162431 #32	ENSGT00940000162311 #33	ENSGT00390000014512 #34	ENSGT01050000244887.A.a.a.b #35	ENSGT00390000005100 #36	ENSGT00510000047802
Felidae	ANCESTRAL SPECIES	21	ENSGT00940000156887 #7	ENSGT00390000018541 #9	ENSGT00390000010157.b #10	ENSGT00940000160377 #11	ENSGT00390000008862 #12	ENSGT00940000158445 #13	ENSGT00940000155764.C #14	ENSGT00530000063679.B #15	ENSGT00940000156719 #16	ENSGT00940000158178 #17	ENSGT00900000143551	ENSGT00940000159089 #18	ENSGT00940000159801.B #19	ENSGT00390000005605 #20	ENSGT00530000063000.a.a.b #21	ENSGT01050000244887.A.a.a.a #22	ENSGT00940000159543 #23	ENSGT00940000159788.b #24	ENSGT00390000013443.c #25	ENSGT00940000159869 #26	ENSGT00940000159005 #27	ENSGT00940000160550 #28	ENSGT00940000161143 #29	ENSGT00470000042444 #30	ENSGT00940000162184 #31	ENSGT00940000162431 #32	ENSGT00940000162311 #33	ENSGT00390000014512 #34	ENSGT01050000244887.A.a.a.b #35	ENSGT00390000005100 #36	ENSGT00510000047802
Panthera	ANCESTRAL SPECIES	15	ENSGT00940000156887 #7	ENSGT00390000018541 #9	ENSGT00390000010157.b #10	ENSGT00940000160377 #11	ENSGT00390000008862 #12	ENSGT00940000158445 #13	ENSGT00940000155764.C #14	ENSGT00530000063679.B #15	ENSGT00940000156719 #16	ENSGT00940000158178 #17	ENSGT00900000143551	ENSGT00940000159089 #18	ENSGT00940000159801.B #19	ENSGT00390000005605 #20	ENSGT00530000063000.a.a.b #21	ENSGT01050000244887.A.a.a.a #22	ENSGT00940000159543 #23	ENSGT00940000159788.b #24	ENSGT00940000170960	ENSGT00390000013443.c #25	ENSGT00940000159869 #26	ENSGT00940000159005 #27	ENSGT00940000160550 #28	ENSGT00940000161143 #29	ENSGT00470000042444 #30	ENSGT00940000162184 #31	ENSGT00940000162431 #32	ENSGT00940000162311 #33	ENSGT00390000014512 #34	ENSGT01050000244887.A.a.a.b #35	ENSGT00390000005100 #36
Panthera_a	ANCESTRAL SPECIES		ENSGT00940000156887 #7	ENSGT00390000018541 #9	ENSGT00390000010157.b #10	ENSGT00940000160377 #11	ENSGT00390000008862 #12	ENSGT00940000158445 #13	ENSGT00940000155764.C #14	ENSGT00530000063679.B #15	ENSGT00940000156719 #16	ENSGT00900000143551	ENSGT00940000158178 #17	ENSGT00940000159089 #18	ENSGT00940000159801.B #19	ENSGT00390000005605 #20	ENSGT00530000063000.a.a.b #21	ENSGT01050000244887.A.a.a.a #22	ENSGT00940000159543 #23	ENSGT00940000159788.b #24	ENSGT00940000170960	ENSGT00390000013443.c #25	ENSGT00940000159869 #26	ENSGT00940000159005 #27	ENSGT00940000160550 #28	ENSGT00940000161143 #29	ENSGT00470000042444 #30	ENSGT00940000162184 #31	ENSGT00940000162431 #32	ENSGT00940000162311 #33	ENSGT00390000014512 #34	ENSGT01050000244887.A.a.a.b #35	ENSGT00390000005100 #36
leopard	DUPLICATION
leopard	MODERN SPECIES	457																ENSPPRG00000011972 #22
leopard	MODERN SPECIES	110	TIMM29 (ENSPPRG00000009470) #9	YIPF2 (ENSPPRG00000009314) #10	CARM1 (ENSPPRG00000007534) #11	C19orf38 (ENSPPRG00000006099) #12	TMED1 (ENSPPRG00000005601) #13	DNM2 (ENSPPRG00000005225) #14	ENSPPRG00000000095 #14	QTRT1 (ENSPPRG00000022719) #15	ILF3 (ENSPPRG00000021486) #16	SLC44A2 (ENSPPRG00000006187) #17	ENSPPRG00000002741	AP1M2 (ENSPPRG00000002436) #18	CDKN2D (ENSPPRG00000001424) #19	KRI1 (ENSPPRG00000001072) #20	ATG4D (ENSPPRG00000000081) #21	ENSPPRG00000022644 #22	KEAP1 (ENSPPRG00000023110) #23	PDE4A (ENSPPRG00000023496) #24	ENSPPRG00000017450	CDC37 (ENSPPRG00000013068) #25	TYK2 (ENSPPRG00000012402) #26	ICAM3 (ENSPPRG00000011491) #27	RAVER1 (ENSPPRG00000009912) #28	FDX2 (ENSPPRG00000007655) #29	ZGLP1 (ENSPPRG00000007383) #30	ICAM5 (ENSPPRG00000006799) #31	ICAM4 (ENSPPRG00000005803) #32	ICAM1 (ENSPPRG00000005262) #33	MRPL4 (ENSPPRG00000004312) #34	S1PR2 (ENSPPRG00000017112) #35	DNMT1 (ENSPPRG00000003596) #36
lion	MODERN SPECIES	2	TIMM29 (ENSPLOG00000010493) #9	YIPF2 (ENSPLOG00000004338) #10	CARM1 (ENSPLOG00000004311) #11	C19orf38 (ENSPLOG00000004284) #12	TMED1 (ENSPLOG00000004267) #13	DNM2 (ENSPLOG00000004141) #14	QTRT1 (ENSPLOG00000004032) #15	ENSPLOG00000004021	ILF3 (ENSPLOG00000003999) #16	ENSPLOG00000003962	SLC44A2 (ENSPLOG00000003904) #17	AP1M2 (ENSPLOG00000003836) #18	CDKN2D (ENSPLOG00000003822) #19	KRI1 (ENSPLOG00000003783) #20	ATG4D (ENSPLOG00000003751) #21	S1PR5 (ENSPLOG00000003732) #22	KEAP1 (ENSPLOG00000003715) #23	PDE4A (ENSPLOG00000003631) #24	CDC37 (ENSPLOG00000003550) #25	TYK2 (ENSPLOG00000003514) #26	ICAM3 (ENSPLOG00000003485) #27	RAVER1 (ENSPLOG00000003453) #28	FDX2 (ENSPLOG00000003426) #29	ENSPLOG00000003406 #30	ICAM5 (ENSPLOG00000003385) #31	ICAM4 (ENSPLOG00000003370) #32	ICAM1 (ENSPLOG00000003347) #33	MRPL4 (ENSPLOG00000003305) #34	S1PR2 (ENSPLOG00000003282) #35	DNMT1 (ENSPLOG00000003231) #36	EIF3G (ENSPLOG00000003189)
Cat	MODERN SPECIES	1	LDLR (ENSFCAG00000004895)	SMARCA4 (ENSFCAG00000004894) #7	TIMM29 (ENSFCAG00000045120) #9	YIPF2 (ENSFCAG00000027596) #10	CARM1 (ENSFCAG00000004893) #11	CA2H19orf38 (ENSFCAG00000018213) #12	TMED1 (ENSFCAG00000032603) #13	DNM2 (ENSFCAG00000004892) #14	QTRT1 (ENSFCAG00000026012) #15	ILF3 (ENSFCAG00000004887) #16	SLC44A2 (ENSFCAG00000004885) #17	AP1M2 (ENSFCAG00000004258) #18	CDKN2D (ENSFCAG00000022117) #19	KRI1 (ENSFCAG00000004884) #20	ATG4D (ENSFCAG00000004883) #21	S1PR5 (ENSFCAG00000031632) #22	KEAP1 (ENSFCAG00000012518) #23	PDE4A (ENSFCAG00000004881) #24	ENSFCAG00000009437 #25	TYK2 (ENSFCAG00000009436) #26	ICAM3 (ENSFCAG00000029803) #27	RAVER1 (ENSFCAG00000009435) #28	FDX2 (ENSFCAG00000009434) #29	ZGLP1 (ENSFCAG00000031808) #30	ICAM5 (ENSFCAG00000009433) #31	ICAM4 (ENSFCAG00000009432) #32	ICAM1 (ENSFCAG00000009431) #33	MRPL4 (ENSFCAG00000043071) #34	S1PR2 (ENSFCAG00000013003) #35	DNMT1 (ENSFCAG00000012246) #36	EIF3G (ENSFCAG00000009389)
Caniformia	ANCESTRAL SPECIES	4	ENSGT00940000156887 #7	ENSGT00390000018541 #9	ENSGT00390000010157.b #10	ENSGT00940000160377 #11	ENSGT00390000008862 #12	ENSGT00940000158445 #13	ENSGT00940000155764.C #14	ENSGT00530000063679.B #15	ENSGT00940000156719 #16	ENSGT01100000264612	ENSGT00940000158178 #17	ENSGT00940000159089 #18	ENSGT00940000159801.B #19	ENSGT00390000005605 #20	ENSGT00530000063000.a.a.b #21	ENSGT01050000244887.A.a.a.a #22	ENSGT00940000159543 #23	ENSGT00940000159788.b #24	ENSGT00390000013443.c #25	ENSGT00940000159869 #26	ENSGT00940000159005 #27	ENSGT00940000160550 #28	ENSGT00940000161143 #29	ENSGT00470000042444 #30	ENSGT00940000162184 #31	ENSGT00940000162431 #32	ENSGT00940000162311 #33	ENSGT00390000014512 #34	ENSGT01050000244887.A.a.a.b #35	ENSGT00390000005100 #36	ENSGT00510000047802
Caniformia_b	ANCESTRAL SPECIES	23	ENSGT00940000156887 #7	ENSGT00390000018541 #9	ENSGT00390000010157.b #10	ENSGT00940000160377 #11	ENSGT00390000008862 #12	ENSGT00940000158445 #13	ENSGT00940000155764.C #14	ENSGT00530000063679.B #15	ENSGT00940000156719 #16	ENSGT01100000264612	ENSGT00940000158178 #17	ENSGT00940000159089 #18	ENSGT00940000159801.B #19	ENSGT00390000005605 #20	ENSGT00530000063000.a.a.b #21	ENSGT01050000244887.A.a.a.a #22	ENSGT00940000159543 #23	ENSGT00940000159788.b #24	ENSGT00390000013443.c #25	ENSGT00940000159869 #26	ENSGT00940000159005 #27	ENSGT00940000160550 #28	ENSGT00940000161143 #29	ENSGT00470000042444 #30	ENSGT00940000162184 #31	ENSGT00940000162431 #32	ENSGT00940000162311 #33	ENSGT00390000014512 #34	ENSGT01050000244887.A.a.a.b #35	ENSGT00390000005100 #36	ENSGT00510000047802
Ursidae	ANCESTRAL SPECIES	20	ENSGT00940000156887 #7	ENSGT00390000018541 #9	ENSGT00390000010157.b #10	ENSGT00940000160377 #11	ENSGT00390000008862 #12	ENSGT00940000158445 #13	ENSGT00940000155764.C #14	ENSGT00530000063679.B #15	ENSGT00940000156719 #16	ENSGT01100000264612	ENSGT00940000158178 #17	ENSGT00940000159089 #18	ENSGT00940000159801.B #19	ENSGT00390000005605 #20	ENSGT00530000063000.a.a.b #21	ENSGT01050000244887.A.a.a.a #22	ENSGT00940000159543 #23	ENSGT00940000159788.b #24	ENSGT00390000013443.c #25	ENSGT00940000159869 #26	ENSGT00940000159005 #27	ENSGT00940000160550 #28	ENSGT00940000161143 #29	ENSGT00470000042444 #30	ENSGT00940000162184 #31	ENSGT00940000162431 #32	ENSGT00940000162311 #33	ENSGT00390000014512 #34	ENSGT01050000244887.A.a.a.b #35	ENSGT00390000005100 #36	ENSGT00510000047802.n
Ursus	ANCESTRAL SPECIES	93	ENSGT00940000156887 #7	ENSGT00390000018541 #9	ENSGT00390000010157.b #10	ENSGT00940000160377 #11	ENSGT00390000008862 #12	ENSGT00940000158445 #13	ENSGT00940000155764.C #14	ENSGT00530000063679.B #15	ENSGT00940000156719 #16	ENSGT01100000264612	ENSGT00940000158178 #17	ENSGT00940000159089 #18	ENSGT00940000159801.B #19	ENSGT00390000005605 #20	ENSGT00530000063000.a.a.b #21	ENSGT01050000244887.A.a.a.a #22	ENSGT00940000159543 #23	ENSGT00940000159788.b #24	ENSGT00390000013443.c #25	ENSGT00940000159869 #26	ENSGT00940000159005 #27	ENSGT00940000160550 #28	ENSGT00940000161143 #29	ENSGT00470000042444 #30	ENSGT00940000162184 #31	ENSGT00940000162431 #32	ENSGT00940000162311 #33	ENSGT00390000014512 #34	ENSGT01050000244887.A.a.a.b #35	ENSGT00390000005100 #36	ENSGT00510000047802.n
American black bear	MODERN SPECIES	486									ILF3 (ENSUAMG00000017664) #16	ENSUAMG00000018404	SLC44A2 (ENSUAMG00000018423) #17	AP1M2 (ENSUAMG00000018610) #18	CDKN2D (ENSUAMG00000018611) #19	KRI1 (ENSUAMG00000018612) #20	ATG4D (ENSUAMG00000018615) #21	S1PR5 (ENSUAMG00000018618) #22	KEAP1 (ENSUAMG00000018620) #23	PDE4A (ENSUAMG00000018637) #24	CDC37 (ENSUAMG00000018652) #25	TYK2 (ENSUAMG00000018663) #26	ICAM3 (ENSUAMG00000020384) #27	RAVER1 (ENSUAMG00000020385) #28	FDX2 (ENSUAMG00000020386) #29	ZGLP1 (ENSUAMG00000020388) #30	ICAM5 (ENSUAMG00000020389) #31	ICAM4 (ENSUAMG00000020390) #32	ENSUAMG00000020391 #33	MRPL4 (ENSUAMG00000020392) #34	S1PR2 (ENSUAMG00000020393) #35
Giant Panda	MODERN SPECIES	14	LDLR (ENSAMEG00000010827)	SMARCA4 (ENSAMEG00000010868) #7	TIMM29 (ENSAMEG00000010998) #9	YIPF2 (ENSAMEG00000011001) #10	CARM1 (ENSAMEG00000011015) #11	C19orf38 (ENSAMEG00000011044) #12	TMED1 (ENSAMEG00000011047) #13	DNM2 (ENSAMEG00000011055) #14	QTRT1 (ENSAMEG00000011134) #15	ILF3 (ENSAMEG00000011152) #16	SLC44A2 (ENSAMEG00000011218) #17	AP1M2 (ENSAMEG00000011318) #18	CDKN2D (ENSAMEG00000011370) #19	KRI1 (ENSAMEG00000011373) #20	ATG4D (ENSAMEG00000011409) #21	S1PR5 (ENSAMEG00000030671) #22	KEAP1 (ENSAMEG00000011445) #23	PDE4A (ENSAMEG00000011455) #24	CDC37 (ENSAMEG00000011542) #25	TYK2 (ENSAMEG00000011557) #26	ICAM3 (ENSAMEG00000011709) #27	RAVER1 (ENSAMEG00000011738) #28	FDX2 (ENSAMEG00000011765) #29	ZGLP1 (ENSAMEG00000011774) #30	ENSAMEG00000026236	ICAM5 (ENSAMEG00000011775) #31	ICAM4 (ENSAMEG00000011803) #32	ICAM1 (ENSAMEG00000011805) #33	MRPL4 (ENSAMEG00000011808) #34	S1PR2 (ENSAMEG00000019659) #35	DNMT1 (ENSAMEG00000011823) #36
Mustelinae	ANCESTRAL SPECIES	45	ENSGT00940000156887 #7	ENSGT00390000018541 #9	ENSGT00390000010157.b #10	ENSGT00940000160377 #11	ENSGT00390000008862 #12	ENSGT00940000158445 #13	ENSGT00940000155764.C #14	ENSGT00530000063679.B #15	ENSGT00940000156719 #16	ENSGT01100000264612	ENSGT00940000158178 #17	ENSGT00940000159089 #18	ENSGT00940000159801.B #19	ENSGT00390000005605 #20	ENSGT00530000063000.a.a.b #21	ENSGT01050000244887.A.a.a.a #22	ENSGT00940000159543 #23	ENSGT00940000159788.b #24	ENSGT00390000013443.c #25	ENSGT00940000159869 #26	ENSGT00940000159005 #27	ENSGT00940000160550 #28	ENSGT00940000161143 #29	ENSGT00470000042444 #30	ENSGT00940000162184 #31	ENSGT00940000162431 #32	ENSGT00940000162311 #33	ENSGT00390000014512 #34	ENSGT01050000244887.A.a.a.b #35	ENSGT00390000005100 #36	ENSGT00510000047802
American mink	MODERN SPECIES	233	LDLR (ENSNVIG00000002095)	SMARCA4 (ENSNVIG00000000964) #7	TIMM29 (ENSNVIG00000000951) #9	YIPF2 (ENSNVIG00000000916) #10	CARM1 (ENSNVIG00000000875) #11	C19orf38 (ENSNVIG00000000851) #12	TMED1 (ENSNVIG00000000836) #13	DNM2 (ENSNVIG00000000504) #14	ILF3 (ENSNVIG00000000028) #16	ENSNVIG00000024114	SLC44A2 (ENSNVIG00000024109) #17	AP1M2 (ENSNVIG00000024101) #18	CDKN2D (ENSNVIG00000024098) #19	KRI1 (ENSNVIG00000024085) #20	ATG4D (ENSNVIG00000024084) #21	S1PR5 (ENSNVIG00000024083) #22	KEAP1 (ENSNVIG00000024081) #23	PDE4A (ENSNVIG00000024079) #24	CDC37 (ENSNVIG00000024077) #25	TYK2 (ENSNVIG00000023790) #26	ICAM3 (ENSNVIG00000023787) #27	RAVER1 (ENSNVIG00000023781) #28	ENSNVIG00000023780 #29	ENSNVIG00000023779 #30	ICAM5 (ENSNVIG00000023776) #31	ICAM4 (ENSNVIG00000023772) #32	ICAM1 (ENSNVIG00000023769) #33	MRPL4 (ENSNVIG00000023765) #34	S1PR2 (ENSNVIG00000023762) #35	DNMT1 (ENSNVIG00000023752) #36	EIF3G (ENSNVIG00000023747)
Ferret	MODERN SPECIES	185	LDLR (ENSMPUG00000005700)	SMARCA4 (ENSMPUG00000005711) #7	TIMM29 (ENSMPUG00000005726) #9	YIPF2 (ENSMPUG00000005740) #10	CARM1 (ENSMPUG00000005752) #11	C19orf38 (ENSMPUG00000005817) #12	TMED1 (ENSMPUG00000005821) #13	ENSMPUG00000005856 #14	QTRT1 (ENSMPUG00000006190) #15	ILF3 (ENSMPUG00000006205) #16	SLC44A2 (ENSMPUG00000006218) #17	AP1M2 (ENSMPUG00000006512) #18	CDKN2D (ENSMPUG00000006525) #19	KRI1 (ENSMPUG00000006534) #20	ATG4D (ENSMPUG00000006554) #21	S1PR5 (ENSMPUG00000006658) #22	KEAP1 (ENSMPUG00000006665) #23	PDE4A (ENSMPUG00000006672) #24	CDC37 (ENSMPUG00000006683) #25	TYK2 (ENSMPUG00000006692) #26	RAVER1 (ENSMPUG00000006712) #28	FDX2 (ENSMPUG00000006723) #29	ENSMPUG00000006747	ICAM5 (ENSMPUG00000006752) #31	ICAM4 (ENSMPUG00000006813) #32	ICAM1 (ENSMPUG00000006820) #33	MRPL4 (ENSMPUG00000006825) #34	S1PR2 (ENSMPUG00000018709) #35	DNMT1 (ENSMPUG00000006829) #36	EIF3G (ENSMPUG00000006847)	P2RY11 (ENSMPUG00000018711)
Canidae	ANCESTRAL SPECIES		ENSGT00940000161046	ENSGT00940000156887 #7	ENSGT00390000018541 #9	ENSGT00390000010157.b #10	ENSGT00940000160377 #11	ENSGT00390000008862 #12	ENSGT00940000158445 #13	ENSGT00940000155764.C #14	ENSGT00530000063679.B #15	ENSGT00940000156719 #16	ENSGT00940000158178 #17	ENSGT00940000159089 #18	ENSGT00940000159801.B #19	ENSGT00390000005605 #20	ENSGT00530000063000.a.a.b #21	ENSGT01050000244887.A.a.a.a #22	ENSGT00940000159543 #23	ENSGT00940000159788.b #24	ENSGT00390000013443.c #25	ENSGT00940000159869 #26	ENSGT00940000159005 #27	ENSGT00940000160550 #28	ENSGT00940000161143 #29	ENSGT00470000042444 #30	ENSGT00940000162184 #31	ENSGT00940000162431 #32	ENSGT00940000162311 #33	ENSGT00390000014512 #34	ENSGT01050000244887.A.a.a.b #35	ENSGT00390000005100 #36	ENSGT00510000047802
Red fox	MODERN SPECIES	182	SPC24 (ENSVVUG00000017858)	LDLR (ENSVVUG00000017844)	SMARCA4 (ENSVVUG00000017820) #7	TIMM29 (ENSVVUG00000017817) #9	YIPF2 (ENSVVUG00000017813) #10	CARM1 (ENSVVUG00000017717) #11	TMED1 (ENSVVUG00000017707) #13	DNM2 (ENSVVUG00000017697) #14	QTRT1 (ENSVVUG00000017540) #15	ILF3 (ENSVVUG00000017504) #16	SLC44A2 (ENSVVUG00000017455) #17	ENSVVUG00000017448 #18	CDKN2D (ENSVVUG00000017432) #19	KRI1 (ENSVVUG00000017413) #20	ATG4D (ENSVVUG00000017356) #21	ENSVVUG00000017346 #22	KEAP1 (ENSVVUG00000017341) #23	PDE4A (ENSVVUG00000017287) #24	CDC37 (ENSVVUG00000017252) #25
Canis_lupus	ANCESTRAL SPECIES	1	ENSGT00940000161046	ENSGT00940000156887 #7	ENSGT00390000018541 #9	ENSGT00390000010157.b #10	ENSGT00940000160377 #11	ENSGT00390000008862 #12	ENSGT00940000158445 #13	ENSGT00940000155764.C #14	ENSGT00530000063679.B #15	ENSGT00940000156719 #16	ENSGT00940000158178 #17	ENSGT00940000159089 #18	ENSGT00940000159801.B #19	ENSGT00390000005605 #20	ENSGT00530000063000.a.a.b #21	ENSGT01050000244887.A.a.a.a #22	ENSGT00940000159543 #23	ENSGT00940000159788.b #24	ENSGT00390000013443.c #25	ENSGT00940000159869 #26	ENSGT00940000159005 #27	ENSGT00940000160550 #28	ENSGT00940000161143 #29	ENSGT00470000042444 #30	ENSGT00940000162184 #31	ENSGT00940000162431 #32	ENSGT00940000162311 #33	ENSGT00390000014512 #34	ENSGT01050000244887.A.a.a.b #35	ENSGT00390000005100 #36	ENSGT00510000047802
Dingo	MODERN SPECIES	112	LDLR (ENSCAFG00020025417)	SMARCA4 (ENSCAFG00020024620) #7	TIMM29 (ENSCAFG00020024523) #9	YIPF2 (ENSCAFG00020024521) #10	ENSCAFG00020024515 #11	C19orf38 (ENSCAFG00020024508) #12	TMED1 (ENSCAFG00020024503) #13	DNM2 (ENSCAFG00020024497) #14	QTRT1 (ENSCAFG00020024495) #15	ILF3 (ENSCAFG00020024492) #16	SLC44A2 (ENSCAFG00020024490) #17	AP1M2 (ENSCAFG00020024487) #18	CDKN2D (ENSCAFG00020024485) #19	KRI1 (ENSCAFG00020024483) #20	ATG4D (ENSCAFG00020024480) #21	ENSCAFG00020024479 #22	KEAP1 (ENSCAFG00020024476) #23	PDE4A (ENSCAFG00020024472) #24	CDC37 (ENSCAFG00020024470) #25	TYK2 (ENSCAFG00020024459) #26	ICAM3 (ENSCAFG00020024455) #27	RAVER1 (ENSCAFG00020024449) #28	FDX2 (ENSCAFG00020024447) #29	ZGLP1 (ENSCAFG00020024441) #30	ICAM5 (ENSCAFG00020024426) #31	ICAM4 (ENSCAFG00020024419) #32	ICAM1 (ENSCAFG00020024415) #33	MRPL4 (ENSCAFG00020024405) #34	S1PR2 (ENSCAFG00020024403) #35	DNMT1 (ENSCAFG00020023719) #36	EIF3G (ENSCAFG00020023628)
Dog	MODERN SPECIES	12	LDLR (ENSCAFG00845021826)	SMARCA4 (ENSCAFG00845022085) #7	YIPF2 (ENSCAFG00845022472) #10	TIMM29 (ENSCAFG00845022723) #9	ENSCAFG00845022768 #11	C20H19orf38 (ENSCAFG00845022938) #12	TMED1 (ENSCAFG00845023014) #13	DNM2 (ENSCAFG00845023306) #14	ILF3 (ENSCAFG00845024192) #16	SLC44A2 (ENSCAFG00845024850) #17	AP1M2 (ENSCAFG00845026105) #18	CDKN2D (ENSCAFG00845026179) #19	KRI1 (ENSCAFG00845026221) #20	ATG4D (ENSCAFG00845026379) #21	KEAP1 (ENSCAFG00845026598) #23	S1PR5 (ENSCAFG00845026691) #22	PDE4A (ENSCAFG00845026907) #24	CDC37 (ENSCAFG00845027375) #25	TYK2 (ENSCAFG00845027438) #26	ICAM3 (ENSCAFG00845027621) #27	RAVER1 (ENSCAFG00845027658) #28	FDX2 (ENSCAFG00845027784) #29	ENSCAFG00845027817 #30	ICAM5 (ENSCAFG00845027874) #31	ICAM4 (ENSCAFG00845027954) #32	ICAM1 (ENSCAFG00845027986) #33	MRPL4 (ENSCAFG00845028082) #34	S1PR2 (ENSCAFG00845018161) #35	DNMT1 (ENSCAFG00845018246) #36	EIF3G (ENSCAFG00845018422)	P2RY11 (ENSCAFG00845018602)
Laurasiatheria_c	ANCESTRAL SPECIES	16	ENSGT00940000156887 #7	ENSGT00390000018541 #9	ENSGT00390000010157.b #10	ENSGT00940000160377 #11	ENSGT00390000008862 #12	ENSGT00940000158445 #13	ENSGT00940000155764.C #14	ENSGT00530000063679.B #15	ENSGT00940000156719 #16	ENSGT00900000143551	ENSGT00940000158178 #17	ENSGT00940000159089 #18	ENSGT00940000159801.B #19	ENSGT00390000005605 #20	ENSGT00530000063000.a.a.b #21	ENSGT01050000244887.A.a.a.a #22	ENSGT00940000159543 #23	ENSGT00940000159788.b #24	ENSGT00390000013443.c #25	ENSGT00940000159869 #26	ENSGT00940000159005 #27	ENSGT00940000160550 #28	ENSGT00940000161143 #29	ENSGT00470000042444 #30	ENSGT00940000162184 #31	ENSGT00940000162431 #32	ENSGT00940000162311 #33	ENSGT00390000014512 #34	ENSGT01050000244887.A.a.a.b #35	ENSGT00390000005100 #36	ENSGT00510000047802
Equus	ANCESTRAL SPECIES	53	ENSGT00940000156887 #7	ENSGT00390000018541 #9	ENSGT00390000010157.b #10	ENSGT00940000160377 #11	ENSGT00390000008862 #12	ENSGT00940000158445 #13	ENSGT00940000155764.C #14	ENSGT00530000063679.B #15	ENSGT00940000156719 #16	ENSGT00900000143551	ENSGT00940000158178 #17	ENSGT00940000159089 #18	ENSGT00940000159801.B #19	ENSGT00390000005605 #20	ENSGT00530000063000.a.a.b #21	ENSGT01050000244887.A.a.a.a #22	ENSGT00940000159543 #23	ENSGT00940000159788.b #24	ENSGT00390000013443.c #25	ENSGT00390000016292.i.a.h	ENSGT00940000159869 #26	ENSGT00940000159005 #27	ENSGT00940000160550 #28	ENSGT00940000161143 #29	ENSGT00470000042444 #30	ENSGT00940000162184 #31	ENSGT00940000162431 #32	ENSGT00940000162311 #33	ENSGT00390000014512 #34	ENSGT01050000244887.A.a.a.b #35	ENSGT00390000005100 #36
Donkey	MODERN SPECIES	12	SMARCA4 (ENSEASG00005006167) #7	TIMM29 (ENSEASG00005007528) #9	YIPF2 (ENSEASG00005007530) #10	CARM1 (ENSEASG00005007536) #11	ENSEASG00005030995 #12	TMED1 (ENSEASG00005031420) #13	DNM2 (ENSEASG00005007575) #14	QTRT1 (ENSEASG00005008453) #15	ILF3 (ENSEASG00005008476) #16	ENSEASG00005010451	SLC44A2 (ENSEASG00005008771) #17	AP1M2 (ENSEASG00005010464) #18	CDKN2D (ENSEASG00005026481) #19	KRI1 (ENSEASG00005010499) #20	ATG4D (ENSEASG00005038617) #21	S1PR5 (ENSEASG00005027849) #22	KEAP1 (ENSEASG00005010513) #23	PDE4A (ENSEASG00005010517) #24	CDC37 (ENSEASG00005036500) #25	ENSEASG00005034109	TYK2 (ENSEASG00005010539) #26	ICAM3 (ENSEASG00005010542) #27	RAVER1 (ENSEASG00005010544) #28	FDX2 (ENSEASG00005010545) #29	ENSEASG00005030776 #30	ICAM5 (ENSEASG00005010548) #31	ICAM4 (ENSEASG00005024479) #32	ENSEASG00005010553 #33	MRPL4 (ENSEASG00005010556) #34	S1PR2 (ENSEASG00005026403) #35	DNMT1 (ENSEASG00005010561) #36
Horse	MODERN SPECIES	28	LDLR (ENSECAG00000019557)	SMARCA4 (ENSECAG00000008334) #7	ENSECAG00000046578 #9	YIPF2 (ENSECAG00000012720) #10	CARM1 (ENSECAG00000013563) #11	C7H19orf38 (ENSECAG00000019977) #12	TMED1 (ENSECAG00000021522) #13	DNM2 (ENSECAG00000022341) #14	QTRT1 (ENSECAG00000014773) #15	ILF3 (ENSECAG00000017640) #16	SLC44A2 (ENSECAG00000010363) #17	ENSECAG00000039388	ATG4D (ENSECAG00000015306) #21	CDKN2D (ENSECAG00000034985) #19	KRI1 (ENSECAG00000011767) #20	S1PR5 (ENSECAG00000031779) #22	KEAP1 (ENSECAG00000020533) #23	PDE4A (ENSECAG00000023182) #24	CDC37 (ENSECAG00000012896) #25	ENSECAG00000004638	TYK2 (ENSECAG00000020260) #26	RAVER1 (ENSECAG00000024966) #28	FDX2 (ENSECAG00000008220) #29	ZGLP1 (ENSECAG00000028652) #30	ICAM5 (ENSECAG00000009299) #31	ICAM4 (ENSECAG00000012805) #32	S1PR2 (ENSECAG00000004727) #35	ICAM1 (ENSECAG00000013883) #33	MRPL4 (ENSECAG00000017013) #34	DNMT1 (ENSECAG00000026909) #36	ANGPTL6 (ENSECAG00000024918)
Chiroptera	ANCESTRAL SPECIES	59	ENSGT00940000161046	ENSGT00940000156887 #7	ENSGT00390000018541 #9	ENSGT00390000010157.b #10	ENSGT00940000160377 #11	ENSGT00390000008862 #12	ENSGT00940000158445 #13	ENSGT00940000155764.C #14	ENSGT00530000063679.B #15	ENSGT00940000156719 #16	ENSGT00940000158178 #17	ENSGT00940000159089 #18	ENSGT00940000159801.B #19	ENSGT00390000005605 #20	ENSGT00530000063000.a.a.b #21	ENSGT01050000244887.A.a.a.a #22	ENSGT00940000159543 #23	ENSGT00940000159788.b #24	ENSGT00390000013443.c #25	ENSGT00940000159869 #26	ENSGT00940000159005 #27	ENSGT00940000160550 #28	ENSGT00940000161143 #29	ENSGT00470000042444 #30	ENSGT00940000162184 #31	ENSGT00940000162431 #32	ENSGT00940000162311 #33	ENSGT00390000014512 #34	ENSGT01050000244887.A.a.a.b #35	ENSGT00390000005100 #36	ENSGT00510000047802
Microchiroptera	ANCESTRAL SPECIES	53	ENSGT00940000161046	ENSGT00940000156887 #7	ENSGT00390000018541 #9	ENSGT00390000010157.b #10	ENSGT00940000160377 #11	ENSGT00390000008862 #12	ENSGT00940000158445 #13	ENSGT00940000155764.C #14	ENSGT00530000063679.B #15	ENSGT00940000156719 #16	ENSGT00940000158178 #17	ENSGT00940000159089 #18	ENSGT00940000159801.B #19	ENSGT00390000005605 #20	ENSGT00530000063000.a.a.b #21	ENSGT01050000244887.A.a.a.a #22	ENSGT00940000159543 #23	ENSGT00940000159788.b #24	ENSGT00390000013443.c #25	ENSGT00940000159869 #26	ENSGT00940000159005 #27	ENSGT00940000160550 #28	ENSGT00940000161143 #29	ENSGT00470000042444 #30	ENSGT00940000162184 #31	ENSGT00940000162431 #32	ENSGT00940000162311 #33	ENSGT00390000014512 #34	ENSGT01050000244887.A.a.a.b #35	ENSGT00390000005100 #36	ENSGT00510000047802
Microbat	MODERN SPECIES	1472																S1PR5 (ENSMLUG00000015144) #22	KEAP1 (ENSMLUG00000015137) #23	PDE4A (ENSMLUG00000015123) #24	CDC37 (ENSMLUG00000012357) #25	TYK2 (ENSMLUG00000012345) #26	ICAM3 (ENSMLUG00000012338) #27	RAVER1 (ENSMLUG00000012328) #28	FDX2 (ENSMLUG00000012316) #29	ICAM5 (ENSMLUG00000012304) #31	ICAM4 (ENSMLUG00000012295) #32	ICAM1 (ENSMLUG00000012289) #33	MRPL4 (ENSMLUG00000012280) #34	S1PR2 (ENSMLUG00000026451) #35	DNMT1 (ENSMLUG00000001347) #36	EIF3G (ENSMLUG00000014196)	P2RY11 (ENSMLUG00000014192)
Greater horseshoe bat	MODERN SPECIES	9	SMARCA4 (ENSRFEG00010013040) #7	ENSRFEG00010013191	TIMM29 (ENSRFEG00010013206) #9	YIPF2 (ENSRFEG00010013241) #10	CARM1 (ENSRFEG00010013355) #11	C19orf38 (ENSRFEG00010013441) #12	TMED1 (ENSRFEG00010013495) #13	DNM2 (ENSRFEG00010013597) #14	QTRT1 (ENSRFEG00010013865) #15	ILF3 (ENSRFEG00010013937) #16	SLC44A2 (ENSRFEG00010014184) #17	AP1M2 (ENSRFEG00010014366) #18	CDKN2D (ENSRFEG00010014449) #19	KRI1 (ENSRFEG00010014507) #20	ATG4D (ENSRFEG00010014575) #21	S1PR5 (ENSRFEG00010014610) #22	KEAP1 (ENSRFEG00010014642) #23	ENSRFEG00010014682	PDE4A (ENSRFEG00010014770) #24	CDC37 (ENSRFEG00010015698) #25	TYK2 (ENSRFEG00010015752) #26	ICAM3 (ENSRFEG00010015850) #27	RAVER1 (ENSRFEG00010015894) #28	FDX2 (ENSRFEG00010016631) #29	ENSRFEG00010016728 #30	ICAM5 (ENSRFEG00010016803) #31	ICAM4 (ENSRFEG00010016957) #32	ICAM1 (ENSRFEG00010017025) #33	MRPL4 (ENSRFEG00010017044) #34	EIF3G (ENSRFEG00010018651)	P2RY11 (ENSRFEG00010018700)
Megabat	MODERN SPECIES	2074																S1PR5 (ENSPVAG00000003695) #22	KEAP1 (ENSPVAG00000003694) #23	PDE4A (ENSPVAG00000003693) #24	CDC37 (ENSPVAG00000003692) #25	TYK2 (ENSPVAG00000003691) #26	ICAM3 (ENSPVAG00000003690) #27	RAVER1 (ENSPVAG00000003689) #28	FDX2 (ENSPVAG00000003688) #29	ZGLP1 (ENSPVAG00000003687) #30	ICAM5 (ENSPVAG00000003686) #31	ENSPVAG00000003685 #32	ICAM1 (ENSPVAG00000003684) #33	MRPL4 (ENSPVAG00000003681) #34	S1PR2 (ENSPVAG00000003680) #35	DNMT1 (ENSPVAG00000003676) #36	EIF3G (ENSPVAG00000003674)
Euarchontoglires	ANCESTRAL SPECIES	18	ENSGT00940000156887 #7	ENSGT00390000018541 #9	ENSGT00390000010157.b #10	ENSGT00940000160377 #11	ENSGT00390000008862 #12	ENSGT00940000158445 #13	ENSGT00940000155764.C #14	ENSGT00530000063679.B #15	ENSGT00940000156719 #16	ENSGT00900000143551	ENSGT00940000158178 #17	ENSGT00940000159089 #18	ENSGT00940000159801.B #19	ENSGT00390000005605 #20	ENSGT00530000063000.a.a.b #21	ENSGT01050000244887.A.a.a.a #22	ENSGT00940000159543 #23	ENSGT00940000159788.b #24	ENSGT00390000013443.c #25	ENSGT00940000159869 #26	ENSGT00940000159005 #27	ENSGT00940000160550 #28	ENSGT00940000161143 #29	ENSGT00470000042444 #30	ENSGT00940000162184 #31	ENSGT00940000162431 #32	ENSGT00940000162311 #33	ENSGT00390000014512 #34	ENSGT01050000244887.A.a.a.b #35	ENSGT00940000172524	ENSGT00390000005100 #36
Primates	ANCESTRAL SPECIES	18	ENSGT00940000156887 #7	ENSGT00390000018541 #9	ENSGT00390000010157.b #10	ENSGT00940000160377 #11	ENSGT00390000008862 #12	ENSGT00940000158445 #13	ENSGT00940000155764.C #14	ENSGT00530000063679.B #15	ENSGT00940000156719 #16	ENSGT00900000143551	ENSGT00940000158178 #17	ENSGT00940000159089 #18	ENSGT00940000159801.B #19	ENSGT00390000005605 #20	ENSGT00530000063000.a.a.b #21	ENSGT01050000244887.A.a.a.a #22	ENSGT00940000159543 #23	ENSGT00940000159788.b #24	ENSGT00390000013443.c #25	ENSGT00940000159869 #26	ENSGT00940000159005 #27	ENSGT00940000160550 #28	ENSGT00940000161143 #29	ENSGT00470000042444 #30	ENSGT00940000162184 #31	ENSGT00940000162431 #32	ENSGT00940000162311 #33	ENSGT00390000014512 #34	ENSGT01050000244887.A.a.a.b #35	ENSGT00940000172524	ENSGT00390000005100 #36
Haplorrhini	ANCESTRAL SPECIES	14	ENSGT00940000156887 #7	ENSGT00390000018541 #9	ENSGT00390000010157.b #10	ENSGT00940000160377 #11	ENSGT00390000008862 #12	ENSGT00940000158445 #13	ENSGT00940000155764.C #14	ENSGT00530000063679.B #15	ENSGT00940000156719 #16	ENSGT00900000143551	ENSGT00940000158178 #17	ENSGT00940000159089 #18	ENSGT00940000159801.B #19	ENSGT00390000005605 #20	ENSGT00530000063000.a.a.b #21	ENSGT01050000244887.A.a.a.a #22	ENSGT00940000159543 #23	ENSGT00940000159788.b #24	ENSGT00390000013443.c #25	ENSGT00940000159869 #26	ENSGT00940000159005 #27	ENSGT00940000160550 #28	ENSGT00940000161143 #29	ENSGT00470000042444 #30	ENSGT00940000162184 #31	ENSGT00940000162431 #32	ENSGT00940000162311 #33	ENSGT00390000014512 #34	ENSGT01050000244887.A.a.a.b #35	ENSGT00940000172524	ENSGT00390000005100 #36
Simiiformes	ANCESTRAL SPECIES	13	ENSGT00940000156887 #7	ENSGT00390000018541 #9	ENSGT00390000010157.b #10	ENSGT00940000160377 #11	ENSGT00390000008862 #12	ENSGT00940000158445 #13	ENSGT00940000155764.C #14	ENSGT00530000063679.B #15	ENSGT00940000156719 #16	ENSGT00900000143551	ENSGT00940000158178 #17	ENSGT00940000159089 #18	ENSGT00940000159801.B #19	ENSGT00390000005605 #20	ENSGT00530000063000.a.a.b #21	ENSGT01050000244887.A.a.a.a #22	ENSGT00940000159543 #23	ENSGT00940000159788.b #24	ENSGT00390000013443.c.e.b #25	ENSGT00940000159869 #26	ENSGT00910000147865	ENSGT00940000159005 #27	ENSGT00940000160550 #28	ENSGT00940000161143 #29	ENSGT00470000042444 #30	ENSGT00940000162184 #31	ENSGT00940000162431 #32	ENSGT00940000162311 #33	ENSGT00390000014512 #34	ENSGT01050000244887.A.a.a.b #35	ENSGT00940000172524
Catarrhini	ANCESTRAL SPECIES		ENSGT00940000156887 #7	ENSGT00390000018541 #9	ENSGT00390000010157.b #10	ENSGT00940000160377 #11	ENSGT00390000008862 #12	ENSGT00940000158445 #13	ENSGT00940000155764.C #14	ENSGT00530000063679.B #15	ENSGT00940000156719 #16	ENSGT00900000143551	ENSGT00940000158178 #17	ENSGT00940000159089 #18	ENSGT00940000159801.B #19	ENSGT00390000005605 #20	ENSGT00530000063000.a.a.b #21	ENSGT01050000244887.A.a.a.a #22	ENSGT00940000159543 #23	ENSGT00940000159788.b #24	ENSGT00390000013443.c.e.b #25	ENSGT00940000159869 #26	ENSGT00910000147270	ENSGT00940000159005 #27	ENSGT00940000160550 #28	ENSGT00940000161143 #29	ENSGT00470000042444 #30	ENSGT00940000162184 #31	ENSGT00940000162431 #32	ENSGT00940000162311 #33	ENSGT00390000014512 #34	ENSGT01050000244887.A.a.a.b #35	ENSGT00940000172524
Hominoidea	ANCESTRAL SPECIES		ENSGT00940000156887 #7	ENSGT00390000018541 #9	ENSGT00390000010157.b #10	ENSGT00940000160377 #11	ENSGT00390000008862 #12	ENSGT00940000158445 #13	ENSGT00940000155764.C #14	ENSGT00530000063679.B #15	ENSGT00940000156719 #16	ENSGT00900000143551	ENSGT00940000158178 #17	ENSGT00940000159089 #18	ENSGT00940000159801.B #19	ENSGT00390000005605 #20	ENSGT00530000063000.a.a.b #21	ENSGT01050000244887.A.a.a.a #22	ENSGT00940000159543 #23	ENSGT00940000159788.b #24	ENSGT00390000013443.c.e.a.a #25	ENSGT00940000159869 #26	ENSGT00910000147270	ENSGT00940000159005 #27	ENSGT00940000160550 #28	ENSGT00940000161143 #29	ENSGT00470000042444 #30	ENSGT00940000162184 #31	ENSGT00940000162431 #32	ENSGT00940000162311 #33	ENSGT00390000014512 #34	ENSGT01050000244887.A.a.a.b #35	ENSGT00390000005100 #36
Hominidae	ANCESTRAL SPECIES		ENSGT00940000156887 #7	ENSGT00390000018541 #9	ENSGT00390000010157.b #10	ENSGT00940000160377 #11	ENSGT00390000008862 #12	ENSGT00940000158445 #13	ENSGT00940000155764.C #14	ENSGT00530000063679.B #15	ENSGT00940000156719 #16	ENSGT00900000143551	ENSGT00940000158178 #17	ENSGT00940000159089 #18	ENSGT00940000159801.B #19	ENSGT00390000005605 #20	ENSGT00530000063000.a.a.b #21	ENSGT01050000244887.A.a.a.a #22	ENSGT00940000159543 #23	ENSGT00940000159788.b #24	ENSGT00390000013443.c.e.a.a #25	ENSGT00940000159869 #26	ENSGT00910000147270	ENSGT00940000159005 #27	ENSGT00940000160550 #28	ENSGT00940000161143 #29	ENSGT00470000042444 #30	ENSGT00940000162184 #31	ENSGT00940000162431 #32	ENSGT00940000162311 #33	ENSGT00390000014512 #34	ENSGT01050000244887.A.a.a.b #35	ENSGT00390000005100 #36
Homo/Pan/Gorilla group	ANCESTRAL SPECIES		ENSGT00940000156887 #7	ENSGT00390000018541 #9	ENSGT00390000010157.b #10	ENSGT00940000160377 #11	ENSGT00390000008862 #12	ENSGT00940000158445 #13	ENSGT00940000155764.C #14	ENSGT00530000063679.B #15	ENSGT00940000156719 #16	ENSGT00900000143551	ENSGT00940000158178 #17	ENSGT00940000159089 #18	ENSGT00940000159801.B #19	ENSGT00390000005605 #20	ENSGT00530000063000.a.a.b #21	ENSGT01050000244887.A.a.a.a #22	ENSGT00940000159543 #23	ENSGT00940000159788.b #24	ENSGT00390000013443.c.e.a.a #25	ENSGT00940000159869 #26	ENSGT00910000147270	ENSGT00940000159005 #27	ENSGT00940000160550 #28	ENSGT00940000161143 #29	ENSGT00470000042444 #30	ENSGT00940000162184 #31	ENSGT00940000162431 #32	ENSGT00940000162311 #33	ENSGT00390000014512 #34	ENSGT01050000244887.A.a.a.b #35	ENSGT00390000005100 #36
Homo/Pan group	ANCESTRAL SPECIES		ENSGT00940000156887 #7	ENSGT00390000018541 #9	ENSGT00390000010157.b #10	ENSGT00940000160377 #11	ENSGT00390000008862 #12	ENSGT00940000158445 #13	ENSGT00940000155764.C #14	ENSGT00530000063679.B #15	ENSGT00940000156719 #16	ENSGT00900000143551	ENSGT00940000158178 #17	ENSGT00940000159089 #18	ENSGT00940000159801.B #19	ENSGT00390000005605 #20	ENSGT00530000063000.a.a.b #21	ENSGT01050000244887.A.a.a.a #22	ENSGT00940000159543 #23	ENSGT00940000159788.b #24	ENSGT00390000013443.c.e.a.a #25	ENSGT00940000159869 #26	ENSGT00910000147270	ENSGT00940000159005 #27	ENSGT00940000160550 #28	ENSGT00940000161143 #29	ENSGT00470000042444 #30	ENSGT00940000162184 #31	ENSGT00940000162431 #32	ENSGT00940000162311 #33	ENSGT00390000014512 #34	ENSGT01050000244887.A.a.a.b #35	ENSGT00390000005100 #36
Pan	ANCESTRAL SPECIES	14	ENSGT00940000156887 #7	ENSGT00390000018541 #9	ENSGT00390000010157.b #10	ENSGT00940000160377 #11	ENSGT00390000008862 #12	ENSGT00940000158445 #13	ENSGT00940000155764.C #14	ENSGT00530000063679.B #15	ENSGT00940000156719 #16	ENSGT00900000143551	ENSGT00940000158178 #17	ENSGT00940000159089 #18	ENSGT00940000159801.B #19	ENSGT00390000005605 #20	ENSGT00530000063000.a.a.b #21	ENSGT01050000244887.A.a.a.a #22	ENSGT00940000159543 #23	ENSGT00940000159788.b #24	ENSGT00390000013443.c.e.a.a #25	ENSGT00940000159869 #26	ENSGT00910000147270	ENSGT00940000159005 #27	ENSGT00940000160550 #28	ENSGT00940000161143 #29	ENSGT00470000042444 #30	ENSGT00940000162184 #31	ENSGT00940000162431 #32	ENSGT00940000162311 #33	ENSGT00390000014512 #34	ENSGT01050000244887.A.a.a.b #35	ENSGT00390000005100 #36
Bonobo	MODERN SPECIES	10	LDLR (ENSPPAG00000027195)	SMARCA4 (ENSPPAG00000043191) #7	YIPF2 (ENSPPAG00000037888) #10	CARM1 (ENSPPAG00000030586) #11	C19orf38 (ENSPPAG00000042367) #12	TMED1 (ENSPPAG00000031704) #13	DNM2 (ENSPPAG00000004096) #14	QTRT1 (ENSPPAG00000030556) #15	ILF3 (ENSPPAG00000040547) #16	ENSPPAG00000042775	SLC44A2 (ENSPPAG00000039593) #17	AP1M2 (ENSPPAG00000042634) #18	ENSPPAG00000038326 #19	KRI1 (ENSPPAG00000040241) #20	ATG4D (ENSPPAG00000031810) #21	S1PR5 (ENSPPAG00000036033) #22	KEAP1 (ENSPPAG00000038958) #23	PDE4A (ENSPPAG00000043851) #24	CDC37 (ENSPPAG00000041597) #25	TYK2 (ENSPPAG00000039135) #26	ENSPPAG00000020234	ICAM3 (ENSPPAG00000042660) #27	RAVER1 (ENSPPAG00000002611) #28	FDX2 (ENSPPAG00000012689) #29	ZGLP1 (ENSPPAG00000028628) #30	ICAM5 (ENSPPAG00000030844) #31	ICAM4 (ENSPPAG00000035190) #32	ICAM1 (ENSPPAG00000034232) #33	ENSPPAG00000041740 #34	S1PR2 (ENSPPAG00000019512) #35	DNMT1 (ENSPPAG00000027461) #36
Human	MODERN SPECIES	10	LDLR (ENSG00000130164)	SMARCA4 (ENSG00000127616) #7	TIMM29 (ENSG00000142444) #9	YIPF2 (ENSG00000130733) #10	CARM1 (ENSG00000142453) #11	C19orf38 (ENSG00000214212) #12	TMED1 (ENSG00000099203) #13	DNM2 (ENSG00000079805) #14	QTRT1 (ENSG00000213339) #15	ILF3 (ENSG00000129351) #16	SLC44A2 (ENSG00000129353) #17	AP1M2 (ENSG00000129354) #18	CDKN2D (ENSG00000129355) #19	KRI1 (ENSG00000129347) #20	ATG4D (ENSG00000130734) #21	S1PR5 (ENSG00000180739) #22	KEAP1 (ENSG00000079999) #23	PDE4A (ENSG00000065989) #24	CDC37 (ENSG00000105401) #25	TYK2 (ENSG00000105397) #26	ICAM3 (ENSG00000076662) #27	RAVER1 (ENSG00000161847) #28	FDX2 (ENSG00000267673) #29	ZGLP1 (ENSG00000220201) #30	ICAM5 (ENSG00000105376) #31	ICAM4 (ENSG00000105371) #32	ICAM1 (ENSG00000090339) #33	MRPL4 (ENSG00000105364) #34	S1PR2 (ENSG00000267534) #35	DNMT1 (ENSG00000130816) #36	EIF3G (ENSG00000130811)
Orangutan	MODERN SPECIES	10	SMARCA4 (ENSPPYG00000009568) #7	TIMM29 (ENSPPYG00000009567) #9	YIPF2 (ENSPPYG00000009566) #10	CARM1 (ENSPPYG00000009565) #11	C19orf38 (ENSPPYG00000009564) #12	TMED1 (ENSPPYG00000009563) #13	DNM2 (ENSPPYG00000009562) #14	QTRT1 (ENSPPYG00000009561) #15	ILF3 (ENSPPYG00000029648) #16	ENSPPYG00000034793	SLC44A2 (ENSPPYG00000009559) #17	AP1M2 (ENSPPYG00000009558) #18	CDKN2D (ENSPPYG00000009557) #19	KRI1 (ENSPPYG00000009556) #20	ATG4D (ENSPPYG00000036362) #21	S1PR5 (ENSPPYG00000009554) #22	KEAP1 (ENSPPYG00000009553) #23	PDE4A (ENSPPYG00000009552) #24	CDC37 (ENSPPYG00000009551) #25	TYK2 (ENSPPYG00000010516) #26	ENSPPYG00000036913	ENSPPYG00000010514 #28	FDX2 (ENSPPYG00000009550) #29	ZGLP1 (ENSPPYG00000029769) #30	ICAM5 (ENSPPYG00000031661) #31	ENSPPYG00000009549 #32	ICAM1 (ENSPPYG00000009548) #33	ENSPPYG00000009547 #34	ENSPPYG00000009546 #35	DNMT1 (ENSPPYG00000009545) #36	EIF3G (ENSPPYG00000009544)
Gibbon	MODERN SPECIES		TIMM29 (ENSNLEG00000012388) #9	YIPF2 (ENSNLEG00000012384) #10	CARM1 (ENSNLEG00000012371) #11	ENSNLEG00000031325 #12	ENSNLEG00000027586	TMED1 (ENSNLEG00000012365) #13	DNM2 (ENSNLEG00000012352) #14	QTRT1 (ENSNLEG00000012343) #15	ILF3 (ENSNLEG00000012290) #16	SLC44A2 (ENSNLEG00000012275) #17	ENSNLEG00000035868	ENSNLEG00000012270 #18	CDKN2D (ENSNLEG00000012265) #19	ENSNLEG00000012256 #20	ATG4D (ENSNLEG00000012244) #21	ENSNLEG00000032388 #22	ENSNLEG00000012241 #23	PDE4A (ENSNLEG00000012207) #24	CDC37 (ENSNLEG00000012202) #25	TYK2 (ENSNLEG00000012193) #26	ENSNLEG00000027633 #27	ENSNLEG00000028546	RAVER1 (ENSNLEG00000012181) #28	FDX2 (ENSNLEG00000012175) #29	ZGLP1 (ENSNLEG00000029808) #30	ICAM4 (ENSNLEG00000028505) #32	ICAM1 (ENSNLEG00000012158) #33	ENSNLEG00000012155 #34	DNMT1 (ENSNLEG00000012092) #36	EIF3G (ENSNLEG00000012067)	P2RY11 (ENSNLEG00000034093)
Cercopithecidae	ANCESTRAL SPECIES	17	ENSGT00390000018541 #9	ENSGT00390000010157.b #10	ENSGT00940000160377 #11	ENSGT00390000008862 #12	ENSGT00940000158445 #13	ENSGT00940000155764.C #14	ENSGT00530000063679.B #15	ENSGT00940000156719 #16	ENSGT01100000264612	ENSGT00940000158178 #17	ENSGT00900000143551	ENSGT00940000159089 #18	ENSGT00940000159801.B #19	ENSGT00390000005605 #20	ENSGT00530000063000.a.a.b #21	ENSGT01050000244887.A.a.a.a #22	ENSGT00940000159543 #23	ENSGT00940000159788.b #24	ENSGT00390000013443.c.e.b #25	ENSGT00940000159869 #26	ENSGT00910000147270	ENSGT00940000159005 #27	ENSGT00940000160550 #28	ENSGT00940000161143 #29	ENSGT00470000042444 #30	ENSGT00940000162184 #31	ENSGT00940000162431 #32	ENSGT00940000162311 #33	ENSGT00390000014512 #34	ENSGT01050000244887.A.a.a.b #35	ENSGT00940000172524
Cercopithecinae	ANCESTRAL SPECIES	1	ENSGT00940000156887 #7	ENSGT00390000018541 #9	ENSGT00390000010157.b #10	ENSGT00940000160377 #11	ENSGT00390000008862 #12	ENSGT00940000158445 #13	ENSGT00940000155764.C #14	ENSGT00530000063679.B #15	ENSGT00940000156719 #16	ENSGT00900000143551	ENSGT00940000158178 #17	ENSGT00940000159089 #18	ENSGT00940000159801.B #19	ENSGT00390000005605 #20	ENSGT00530000063000.a.a.b #21	ENSGT01050000244887.A.a.a.a #22	ENSGT00940000159543 #23	ENSGT00940000159788.b #24	ENSGT00390000013443.c.e.b #25	ENSGT00940000159869 #26	ENSGT00910000147270	ENSGT00940000159005 #27	ENSGT00940000160550 #28	ENSGT00940000161143 #29	ENSGT00470000042444 #30	ENSGT00940000162184 #31	ENSGT00940000162431 #32	ENSGT00940000162311 #33	ENSGT00390000014512 #34	ENSGT01050000244887.A.a.a.b #35	ENSGT00390000005100 #36
Cercopithecinae_a	ANCESTRAL SPECIES	3	ENSGT00940000156887 #7	ENSGT00390000018541 #9	ENSGT00390000010157.b #10	ENSGT00940000160377 #11	ENSGT00390000008862 #12	ENSGT00940000158445 #13	ENSGT00940000155764.C #14	ENSGT00530000063679.B #15	ENSGT00940000156719 #16	ENSGT00900000143551	ENSGT00940000158178 #17	ENSGT00940000159089 #18	ENSGT00940000159801.B #19	ENSGT00390000005605 #20	ENSGT00530000063000.a.a.b #21	ENSGT01050000244887.A.a.a.a #22	ENSGT00940000159543 #23	ENSGT00940000159788.b #24	ENSGT00390000013443.c.e.b #25	ENSGT00940000159869 #26	ENSGT00910000147270	ENSGT00910000147865	ENSGT00940000159005 #27	ENSGT00940000160550 #28	ENSGT00940000161143 #29	ENSGT00470000042444 #30	ENSGT00940000162184 #31	ENSGT00940000162431 #32	ENSGT00940000162311 #33	ENSGT00390000014512 #34	ENSGT01050000244887.A.a.a.b #35
Cercopithecinae_b	ANCESTRAL SPECIES	13	ENSGT00940000156887 #7	ENSGT00390000018541 #9	ENSGT00390000010157.b #10	ENSGT00940000160377 #11	ENSGT00390000008862 #12	ENSGT00940000158445 #13	ENSGT00940000155764.C #14	ENSGT00530000063679.B #15	ENSGT00940000156719 #16	ENSGT00900000143551	ENSGT00940000158178 #17	ENSGT00940000159089 #18	ENSGT00940000159801.B #19	ENSGT00390000005605 #20	ENSGT00530000063000.a.a.b #21	ENSGT01050000244887.A.a.a.a #22	ENSGT00940000159543 #23	ENSGT00940000159788.b #24	ENSGT00390000013443.c.e.b #25	ENSGT00940000159869 #26	ENSGT00910000147270	ENSGT00910000147865	ENSGT00940000159005 #27	ENSGT00940000160550 #28	ENSGT00940000161143 #29	ENSGT00470000042444 #30	ENSGT00940000162184 #31	ENSGT00940000162431 #32	ENSGT00940000162311 #33	ENSGT00390000014512 #34	ENSGT01050000244887.A.a.a.b #35
Olive baboon	MODERN SPECIES	12	SPC24 (ENSPANG00000005947)	LDLR (ENSPANG00000018406)	SMARCA4 (ENSPANG00000011042) #7	TIMM29 (ENSPANG00000005370) #9	YIPF2 (ENSPANG00000003969) #10	CARM1 (ENSPANG00000021071) #11	C19orf38 (ENSPANG00000007431) #12	TMED1 (ENSPANG00000020664) #13	DNM2 (ENSPANG00000003166) #14	QTRT1 (ENSPANG00000014330) #15	ILF3 (ENSPANG00000014995) #16	SLC44A2 (ENSPANG00000004916) #17	CDKN2D (ENSPANG00000022407) #19	KRI1 (ENSPANG00000022951) #20	ATG4D (ENSPANG00000006123) #21	S1PR5 (ENSPANG00000047566) #22	KEAP1 (ENSPANG00000003566) #23	PDE4A (ENSPANG00000007730) #24	ENSPANG00000011043 #25	TYK2 (ENSPANG00000019963) #26	ICAM3 (ENSPANG00000011402) #27	FDX2 (ENSPANG00000035899) #29	ZGLP1 (ENSPANG00000005034) #30	ICAM5 (ENSPANG00000017123) #31	ICAM4 (ENSPANG00000011444) #32	ICAM1 (ENSPANG00000009752) #33	MRPL4 (ENSPANG00000001265) #34	S1PR2 (ENSPANG00000010514) #35	DNMT1 (ENSPANG00000001264) #36	PPAN (ENSPANG00000005948)	ANGPTL6 (ENSPANG00000008463)
Macaca	ANCESTRAL SPECIES	21	ENSGT00940000156887 #7	ENSGT00390000018541 #9	ENSGT00390000010157.b #10	ENSGT00940000160377 #11	ENSGT00390000008862 #12	ENSGT00940000158445 #13	ENSGT00940000155764.C #14	ENSGT00530000063679.B #15	ENSGT00940000156719 #16	ENSGT00940000158178 #17	ENSGT00900000143551	ENSGT00940000159089 #18	ENSGT00940000159801.B #19	ENSGT00390000005605 #20	ENSGT00530000063000.a.a.b #21	ENSGT01050000244887.A.a.a.a #22	ENSGT00940000159543 #23	ENSGT00940000159788.b #24	ENSGT00390000013443.c.e.b #25	ENSGT00940000159869 #26	ENSGT00940000159005 #27	ENSGT00910000147270	ENSGT00910000147865	ENSGT00940000160550 #28	ENSGT00940000161143 #29	ENSGT00470000042444 #30	ENSGT00940000162184 #31	ENSGT00940000162431 #32	ENSGT00940000162311 #33	ENSGT00390000014512 #34	ENSGT01050000244887.A.a.a.b #35
Macaca_a	ANCESTRAL SPECIES	1	ENSGT00940000161046	ENSGT00940000156887 #7	ENSGT00390000018541 #9	ENSGT00390000010157.b #10	ENSGT00940000160377 #11	ENSGT00390000008862 #12	ENSGT00940000158445 #13	ENSGT00940000155764.C #14	ENSGT00530000063679.B #15	ENSGT00940000156719 #16	ENSGT00940000158178 #17	ENSGT00940000159089 #18	ENSGT00940000159801.B #19	ENSGT00390000005605 #20	ENSGT00530000063000.a.a.b #21	ENSGT01050000244887.A.a.a.a #22	ENSGT00940000159543 #23	ENSGT00940000159788.b #24	ENSGT00390000013443.c.e.b #25	ENSGT00940000159869 #26	ENSGT00910000147865	ENSGT00940000160550 #28	ENSGT00940000161143 #29	ENSGT00470000042444 #30	ENSGT00940000162184 #31	ENSGT00940000162431 #32	ENSGT00940000162311 #33	ENSGT00390000014512 #34	ENSGT01050000244887.A.a.a.b #35	ENSGT00390000005100 #36	ENSGT00510000047802.q.a
Rhesus	MODERN SPECIES	10	TIMM29 (ENSMMUG00000053764) #9	YIPF2 (ENSMMUG00000004400) #10	CARM1 (ENSMMUG00000004401) #11	C19H19orf38 (ENSMMUG00000018981) #12	TMED1 (ENSMMUG00000055775) #13	DNM2 (ENSMMUG00000014677) #14	QTRT1 (ENSMMUG00000028882) #15	ENSMMUG00000053725	ILF3 (ENSMMUG00000014673) #16	ENSMMUG00000060522	SLC44A2 (ENSMMUG00000003744) #17	AP1M2 (ENSMMUG00000016593) #18	CDKN2D (ENSMMUG00000011953) #19	KRI1 (ENSMMUG00000011951) #20	ATG4D (ENSMMUG00000046883) #21	S1PR5 (ENSMMUG00000008686) #22	KEAP1 (ENSMMUG00000005218) #23	ENSMMUG00000059305	PDE4A (ENSMMUG00000016122) #24	CDC37 (ENSMMUG00000003111) #25	TYK2 (ENSMMUG00000003110) #26	RAVER1 (ENSMMUG00000014897) #28	FDX2 (ENSMMUG00000059073) #29	ZGLP1 (ENSMMUG00000050415) #30	ICAM5 (ENSMMUG00000040746) #31	ICAM4 (ENSMMUG00000009343) #32	ICAM1 (ENSMMUG00000014896) #33	MRPL4 (ENSMMUG00000001219) #34	S1PR2 (ENSMMUG00000006586) #35	ENSMMUG00000058342	DNMT1 (ENSMMUG00000014604) #36
Vervet Monkey	MODERN SPECIES	25	KANK2 (ENSCSAG00000006850)	LDLR (ENSCSAG00000006885)	ENSCSAG00000006894 #7	TIMM29 (ENSCSAG00000006898) #9	YIPF2 (ENSCSAG00000006910) #10	CARM1 (ENSCSAG00000006939) #11	TMED1 (ENSCSAG00000006950) #13	DNM2 (ENSCSAG00000006956) #14	QTRT1 (ENSCSAG00000006976) #15	ILF3 (ENSCSAG00000006983) #16	SLC44A2 (ENSCSAG00000007045) #17	CDKN2D (ENSCSAG00000007080) #19	AP1M2 (ENSCSAG00000007087) #18	KRI1 (ENSCSAG00000007096) #20	ATG4D (ENSCSAG00000007103) #21	S1PR5 (ENSCSAG00000018836) #22	KEAP1 (ENSCSAG00000007107) #23	PDE4A (ENSCSAG00000007204) #24	ENSCSAG00000007234 #25	TYK2 (ENSCSAG00000007285) #26	RAVER1 (ENSCSAG00000007317) #28	FDX2 (ENSCSAG00000007325) #29	ZGLP1 (ENSCSAG00000007336) #30	ICAM5 (ENSCSAG00000007342) #31	ICAM4 (ENSCSAG00000007349) #32	ICAM1 (ENSCSAG00000007356) #33	MRPL4 (ENSCSAG00000007362) #34	S1PR2 (ENSCSAG00000018835) #35	DNMT1 (ENSCSAG00000007378) #36	ENSCSAG00000007406	P2RY11 (ENSCSAG00000007416)
Platyrrhini	ANCESTRAL SPECIES	16	ENSGT00940000156887 #7	ENSGT00390000018541 #9	ENSGT00390000010157.b #10	ENSGT00940000160377 #11	ENSGT00390000008862.a #12	ENSGT00940000158445 #13	ENSGT00940000155764.C #14	ENSGT00530000063679.B #15	ENSGT00940000156719 #16	ENSGT00900000143551	ENSGT00940000158178 #17	ENSGT00940000159089.i #18	ENSGT00940000159801.B #19	ENSGT00390000005605 #20	ENSGT00530000063000.a.a.b #21	ENSGT01050000244887.A.a.a.a #22	ENSGT00940000159543 #23	ENSGT00940000159788.b #24	ENSGT00390000013443.c.e.b #25	ENSGT00940000159869 #26	ENSGT00910000147865	ENSGT00940000159005 #27	ENSGT00940000160550 #28	ENSGT00940000161143 #29	ENSGT00470000042444 #30	ENSGT00940000162184 #31	ENSGT00940000162431 #32	ENSGT00940000162311 #33	ENSGT00390000014512 #34	ENSGT01050000244887.A.a.a.b #35	ENSGT00390000005100 #36
Cebidae	ANCESTRAL SPECIES	20	ENSGT00940000156887 #7	ENSGT00390000018541 #9	ENSGT00390000010157.b #10	ENSGT00940000160377 #11	ENSGT00390000008862.a #12	ENSGT00940000158445 #13	ENSGT00940000155764.C #14	ENSGT00530000063679.B #15	ENSGT00940000156719 #16	ENSGT01100000264612	ENSGT00940000158178 #17	ENSGT00940000159089.i.a.a #18	ENSGT00940000159801.B #19	ENSGT00390000005605 #20	ENSGT00530000063000.a.a.b #21	ENSGT01050000244887.A.a.a.a #22	ENSGT00940000159543 #23	ENSGT00940000159788.b #24	ENSGT00390000013443.c.e.b #25	ENSGT00940000159869 #26	ENSGT00940000159005 #27	ENSGT00940000160550 #28	ENSGT00940000161143 #29	ENSGT00470000042444 #30	ENSGT00940000162184 #31	ENSGT00940000162431 #32	ENSGT00940000162311 #33	ENSGT00390000014512 #34	ENSGT01050000244887.A.a.a.b #35	ENSGT00390000005100.n #36	ENSGT00510000047802
Marmoset	MODERN SPECIES	14	LDLR (ENSCJAG00000005907)	SMARCA4 (ENSCJAG00000005936) #7	TIMM29 (ENSCJAG00000006287) #9	YIPF2 (ENSCJAG00000006294) #10	CARM1 (ENSCJAG00000006228) #11	C19orf38 (ENSCJAG00000006309) #12	TMED1 (ENSCJAG00000006313) #13	DNM2 (ENSCJAG00000006319) #14	QTRT1 (ENSCJAG00000006506) #15	ILF3 (ENSCJAG00000006374) #16	SLC44A2 (ENSCJAG00000035886) #17	ENSCJAG00000006616 #18	CDKN2D (ENSCJAG00000083382) #19	KRI1 (ENSCJAG00000006629) #20	ATG4D (ENSCJAG00000006637) #21	S1PR5 (ENSCJAG00000041143) #22	KEAP1 (ENSCJAG00000006677) #23	PDE4A (ENSCJAG00000006698) #24	ENSCJAG00000006753 #25	TYK2 (ENSCJAG00000006781) #26	ICAM3 (ENSCJAG00000005644) #27	RAVER1 (ENSCJAG00000005671) #28	FDX2 (ENSCJAG00000080365) #29	ZGLP1 (ENSCJAG00000075845) #30	ICAM5 (ENSCJAG00000005726) #31	ICAM4 (ENSCJAG00000005760) #32	ICAM1 (ENSCJAG00000047562) #33	MRPL4 (ENSCJAG00000005764) #34	S1PR2 (ENSCJAG00000022912) #35	DNMT1 (ENSCJAG00000005794) #36	EIF3G (ENSCJAG00000005889)
Strepsirrhini	ANCESTRAL SPECIES	28	ENSGT00940000161046	ENSGT00940000156887 #7	ENSGT00390000018541 #9	ENSGT00390000010157.b #10	ENSGT00940000160377 #11	ENSGT00390000008862 #12	ENSGT00940000158445 #13	ENSGT00940000155764.C #14	ENSGT00530000063679.B #15	ENSGT00940000156719 #16	ENSGT00940000158178 #17	ENSGT00940000159089 #18	ENSGT00940000159801.B #19	ENSGT00390000005605 #20	ENSGT00530000063000.a.a.b #21	ENSGT01050000244887.A.a.a.a #22	ENSGT00940000159543 #23	ENSGT00940000159788.b #24	ENSGT00390000013443.c #25	ENSGT00940000159869 #26	ENSGT00940000159005 #27	ENSGT00940000160550 #28	ENSGT00940000161143 #29	ENSGT00470000042444 #30	ENSGT00940000162184 #31	ENSGT00940000162431 #32	ENSGT00940000162311 #33	ENSGT00390000014512 #34	ENSGT01050000244887.A.a.a.b #35	ENSGT00390000005100 #36	ENSGT00510000047802
Bushbaby	DUPLICATION
Bushbaby	DUPLICATION
Bushbaby	MODERN SPECIES	548																ENSOGAG00000028860 #22
Bushbaby	MODERN SPECIES	575																ENSOGAG00000030597 #22
Bushbaby	MODERN SPECIES	242	LDLR (ENSOGAG00000016055)	SMARCA4 (ENSOGAG00000016148) #7	TIMM29 (ENSOGAG00000016147) #9	YIPF2 (ENSOGAG00000016837) #10	CARM1 (ENSOGAG00000016835) #11	C19orf38 (ENSOGAG00000025609) #12	TMED1 (ENSOGAG00000011037) #13	DNM2 (ENSOGAG00000011030) #14	QTRT1 (ENSOGAG00000029328) #15	ENSOGAG00000015244 #16	SLC44A2 (ENSOGAG00000029872) #17	AP1M2 (ENSOGAG00000014423) #18	CDKN2D (ENSOGAG00000030833) #19	KRI1 (ENSOGAG00000027909) #20	ATG4D (ENSOGAG00000012591) #21	ENSOGAG00000027497 #22	KEAP1 (ENSOGAG00000012589) #23	PDE4A (ENSOGAG00000012581) #24	CDC37 (ENSOGAG00000011088) #25	TYK2 (ENSOGAG00000011083) #26	ICAM3 (ENSOGAG00000011078) #27	RAVER1 (ENSOGAG00000011071) #28	FDX2 (ENSOGAG00000011070) #29	ZGLP1 (ENSOGAG00000025914) #30	ICAM5 (ENSOGAG00000011064) #31	ICAM4 (ENSOGAG00000011058) #32	ICAM1 (ENSOGAG00000011055) #33	MRPL4 (ENSOGAG00000011051) #34	S1PR2 (ENSOGAG00000011114) #35	DNMT1 (ENSOGAG00000001265) #36	ENSOGAG00000014463
Euarchontoglires_A	ANCESTRAL SPECIES	20	ENSGT00940000156887 #7	ENSGT00390000018541 #9	ENSGT00390000010157.b #10	ENSGT00940000160377 #11	ENSGT00390000008862 #12	ENSGT00940000158445 #13	ENSGT00940000155764.C #14	ENSGT00530000063679.B #15	ENSGT00940000156719 #16	ENSGT00900000143551	ENSGT00940000158178 #17	ENSGT00940000159089 #18	ENSGT00940000159801.B #19	ENSGT00390000005605 #20	ENSGT00530000063000.a.a.b #21	ENSGT01050000244887.A.a.a.a #22	ENSGT00940000159543 #23	ENSGT00940000159788.b #24	ENSGT00390000013443.c #25	ENSGT00940000159869 #26	ENSGT00940000159005 #27	ENSGT00940000160550 #28	ENSGT00940000161143 #29	ENSGT00470000042444 #30	ENSGT00940000162184 #31	ENSGT00940000162431 #32	ENSGT00940000162311 #33	ENSGT00390000014512 #34	ENSGT01050000244887.A.a.a.b #35	ENSGT00940000172524	ENSGT00390000005100 #36
Glires	ANCESTRAL SPECIES	21	ENSGT00940000156887 #7	ENSGT00390000018541 #9	ENSGT00390000010157.b #10	ENSGT00940000160377 #11	ENSGT00390000008862 #12	ENSGT00940000158445 #13	ENSGT00940000155764.C #14	ENSGT00530000063679.B #15	ENSGT00940000156719 #16	ENSGT00900000143551	ENSGT00940000158178 #17	ENSGT00940000159089 #18	ENSGT00940000159801.B #19	ENSGT00390000005605 #20	ENSGT00530000063000.a.a.b #21	ENSGT01050000244887.A.a.a.a #22	ENSGT00940000159543 #23	ENSGT00940000159788.b #24	ENSGT00390000013443.c #25	ENSGT00940000159869 #26	ENSGT00940000159005 #27	ENSGT00940000160550 #28	ENSGT00940000161143 #29	ENSGT00470000042444 #30	ENSGT00940000162184 #31	ENSGT00940000162431 #32	ENSGT00940000162311 #33	ENSGT00390000014512 #34	ENSGT01050000244887.A.a.a.b #35	ENSGT00940000172524	ENSGT00390000005100 #36
Lagomorpha	ANCESTRAL SPECIES	258									ENSGT00530000063679.B #15	ENSGT00940000156719 #16	ENSGT00940000158178 #17	ENSGT00940000159801.B #19	ENSGT00940000159089 #18	ENSGT00390000005605 #20	ENSGT00530000063000.a.a.b #21	ENSGT01050000244887.A.a.a.a #22	ENSGT00940000159543 #23	ENSGT00940000159788.b #24
Rabbit	MODERN SPECIES	647	LDLR (ENSOCUG00000000651)	SMARCA4 (ENSOCUG00000001787) #7	DNM2 (ENSOCUG00000015302) #14	TIMM29 (ENSOCUG00000003385) #9	YIPF2 (ENSOCUG00000003381) #10	CARM1 (ENSOCUG00000003368) #11	C19orf38 (ENSOCUG00000027943) #12	TMED1 (ENSOCUG00000015317) #13	QTRT1 (ENSOCUG00000021082) #15	ILF3 (ENSOCUG00000013990) #16	SLC44A2 (ENSOCUG00000015558) #17	ENSOCUG00000022727 #19	AP1M2 (ENSOCUG00000024334) #18	KRI1 (ENSOCUG00000014181) #20	ATG4D (ENSOCUG00000014176) #21	S1PR5 (ENSOCUG00000001437) #22	KEAP1 (ENSOCUG00000001435) #23	PDE4A (ENSOCUG00000001428) #24
Rodentia	ANCESTRAL SPECIES	17	ENSGT00940000156887 #7	ENSGT00390000018541 #9	ENSGT00390000010157.b #10	ENSGT00940000160377 #11	ENSGT00390000008862 #12	ENSGT00940000158445 #13	ENSGT00940000155764.C #14	ENSGT00530000063679.B #15	ENSGT00940000156719 #16	ENSGT00900000143551	ENSGT00940000158178 #17	ENSGT00940000159089 #18	ENSGT00940000159801.B #19	ENSGT00390000005605 #20	ENSGT00530000063000.a.a.b #21	ENSGT01050000244887.A.a.a.a #22	ENSGT00940000159543 #23	ENSGT00940000159788.b #24	ENSGT00390000013443.c #25	ENSGT00940000159869 #26	ENSGT00940000159005 #27	ENSGT00940000160550 #28	ENSGT00940000161143 #29	ENSGT00470000042444 #30	ENSGT00940000162184 #31	ENSGT00940000162431 #32	ENSGT00940000162311 #33	ENSGT00390000014512 #34	ENSGT01050000244887.A.a.a.b #35	ENSGT00940000172524	ENSGT00390000005100 #36
Rodentia_B	ANCESTRAL SPECIES	42	ENSGT00940000161046	ENSGT00940000156887 #7	ENSGT00390000018541 #9	ENSGT00390000010157.b #10	ENSGT00940000160377 #11	ENSGT00390000008862 #12	ENSGT00940000158445 #13	ENSGT00940000155764.C #14	ENSGT00530000063679.B #15	ENSGT00940000156719 #16	ENSGT00940000158178 #17	ENSGT00940000159089 #18	ENSGT00940000159801.B #19	ENSGT00390000005605 #20	ENSGT00530000063000.a.a.b #21	ENSGT01050000244887.A.a.a.a #22	ENSGT00940000159543 #23	ENSGT00940000159788.b #24	ENSGT00390000013443.c #25	ENSGT00940000159869 #26	ENSGT00940000160550 #28	ENSGT00940000161143 #29	ENSGT00470000042444 #30	ENSGT00940000162184 #31	ENSGT00940000162431 #32	ENSGT00940000162311 #33	ENSGT00390000014512 #34	ENSGT01050000244887.A.a.a.b #35	ENSGT00390000005100 #36	ENSGT00510000047802	ENSGT00530000064158
Myomorpha	ANCESTRAL SPECIES	51	ENSGT00940000161046	ENSGT00940000156887 #7	ENSGT00390000018541 #9	ENSGT00390000010157.b #10	ENSGT00940000160377 #11	ENSGT00390000008862 #12	ENSGT00940000158445 #13	ENSGT00940000155764.C #14	ENSGT00530000063679.B #15	ENSGT00940000156719 #16	ENSGT00940000158178 #17	ENSGT00940000159089 #18	ENSGT00940000159801.B #19	ENSGT00390000005605 #20	ENSGT00530000063000.a.a.b #21	ENSGT01050000244887.A.a.a.a #22	ENSGT00940000159543 #23	ENSGT00940000159788.b #24	ENSGT00390000013443.c #25	ENSGT00940000159869 #26	ENSGT00940000160550 #28	ENSGT00940000161143 #29	ENSGT00470000042444 #30	ENSGT00940000162184 #31	ENSGT00940000162431 #32	ENSGT00940000162311 #33	ENSGT00390000014512 #34	ENSGT01050000244887.A.a.a.b #35	ENSGT00390000005100 #36	ENSGT00510000047802	ENSGT00530000064158
Muroidea	ANCESTRAL SPECIES	58	ENSGT00940000161046	ENSGT00940000156887 #7	ENSGT00390000018541 #9	ENSGT00390000010157.b #10	ENSGT00940000160377 #11	ENSGT00390000008862 #12	ENSGT00940000158445 #13	ENSGT00940000155764.C #14	ENSGT00530000063679.B #15	ENSGT00940000156719 #16	ENSGT00940000158178 #17	ENSGT00940000159089 #18	ENSGT00940000159801.B #19	ENSGT00390000005605 #20	ENSGT00530000063000.a.a.b #21	ENSGT01050000244887.A.a.a.a #22	ENSGT00940000159543 #23	ENSGT00940000159788.b #24	ENSGT00390000013443.c #25	ENSGT00940000159869 #26	ENSGT00940000160550 #28	ENSGT00940000161143 #29	ENSGT00470000042444 #30	ENSGT00940000162184 #31	ENSGT00940000162431 #32	ENSGT00940000162311 #33	ENSGT00390000014512 #34	ENSGT01050000244887.A.a.a.b #35	ENSGT00390000005100 #36	ENSGT00510000047802	ENSGT00530000064158
Muroidea_A	ANCESTRAL SPECIES	23	ENSGT00940000161046	ENSGT00940000156887 #7	ENSGT00390000018541 #9	ENSGT00390000010157.b #10	ENSGT00940000160377 #11	ENSGT00390000008862 #12	ENSGT00940000158445 #13	ENSGT00940000155764.C #14	ENSGT00530000063679.B #15	ENSGT00940000156719 #16	ENSGT00940000158178 #17	ENSGT00940000159089 #18	ENSGT00940000159801.B #19	ENSGT00390000005605 #20	ENSGT00530000063000.a.a.b #21	ENSGT01050000244887.A.a.a.a #22	ENSGT00940000159543 #23	ENSGT00940000159788.b #24	ENSGT00390000013443.c #25	ENSGT00940000159869 #26	ENSGT00940000160550 #28	ENSGT00940000161143 #29	ENSGT00470000042444 #30	ENSGT00940000162184 #31	ENSGT00940000162431 #32	ENSGT00940000162311 #33	ENSGT00390000014512 #34	ENSGT01050000244887.A.a.a.b #35	ENSGT00390000005100 #36	ENSGT00510000047802	ENSGT00530000064158
Cricetidae	ANCESTRAL SPECIES	4	ENSGT00940000161046	ENSGT00940000156887 #7	ENSGT00390000018541 #9	ENSGT00390000010157.b #10	ENSGT00940000160377 #11	ENSGT00390000008862 #12	ENSGT00940000158445 #13	ENSGT00940000155764.C #14	ENSGT00530000063679.B #15	ENSGT00940000156719 #16	ENSGT00940000158178 #17	ENSGT00940000159089 #18	ENSGT00940000159801.B #19	ENSGT00390000005605 #20	ENSGT00530000063000.a.a.b #21	ENSGT01050000244887.A.a.a.a #22	ENSGT00940000159543 #23	ENSGT00940000159788.b #24	ENSGT00390000013443.c #25	ENSGT00940000159869 #26	ENSGT00940000160550 #28	ENSGT00940000161143 #29	ENSGT00470000042444 #30	ENSGT00940000162184 #31	ENSGT00940000162431 #32	ENSGT00940000162311 #33	ENSGT00390000014512 #34	ENSGT01050000244887.A.a.a.b #35	ENSGT00390000005100 #36	ENSGT00510000047802	ENSGT00530000064158
Cricetinae	ANCESTRAL SPECIES	30	ENSGT00940000161046	ENSGT00940000156887 #7	ENSGT00390000018541 #9	ENSGT00390000010157.b #10	ENSGT00940000160377 #11	ENSGT00390000008862 #12	ENSGT00940000158445 #13	ENSGT00940000155764.C #14	ENSGT00530000063679.B #15	ENSGT00940000156719 #16	ENSGT00940000158178 #17	ENSGT00940000159089 #18	ENSGT00940000159801.B #19	ENSGT00390000005605 #20	ENSGT00530000063000.a.a.b #21	ENSGT01050000244887.A.a.a.a #22	ENSGT00940000159543 #23	ENSGT00940000159788.b #24	ENSGT00390000013443.c #25	ENSGT00940000159869 #26	ENSGT00940000160550 #28	ENSGT00940000161143 #29	ENSGT00470000042444 #30	ENSGT00940000162184 #31	ENSGT00940000162431 #32	ENSGT00940000162311 #33	ENSGT00390000014512 #34	ENSGT01050000244887.A.a.a.b #35	ENSGT00390000005100 #36	ENSGT00510000047802	ENSGT00530000064158
Chinese hamster chok1gshd	MODERN SPECIES	189	Ldlr (ENSCGRG00001014331)	Smarca4 (ENSCGRG00001016732) #7	Timm29 (ENSCGRG00001007273) #9	Yipf2 (ENSCGRG00001005089) #10	Carm1 (ENSCGRG00001023212) #11	AB124611 (ENSCGRG00001019412) #12	Tmed1 (ENSCGRG00001018097) #13	Dnm2 (ENSCGRG00001015804) #14	Qtrt1 (ENSCGRG00001001152) #15	Ilf3 (ENSCGRG00001021577) #16	Slc44a2 (ENSCGRG00001014087) #17	Ap1m2 (ENSCGRG00001020691) #18	Cdkn2d (ENSCGRG00001019561) #19	Kri1 (ENSCGRG00001018764) #20	Atg4d (ENSCGRG00001017644) #21	S1pr5 (ENSCGRG00001009679) #22	Keap1 (ENSCGRG00001016562) #23	Pde4a (ENSCGRG00001014442) #24	ENSCGRG00001017764 #25	Tyk2 (ENSCGRG00001016315) #26	Raver1 (ENSCGRG00001013260) #28	Fdx2 (ENSCGRG00001012584) #29	Zglp1 (ENSCGRG00001002376) #30	Icam5 (ENSCGRG00001000449) #31	Icam4 (ENSCGRG00001018219) #32	Icam1 (ENSCGRG00001015045) #33	Mrpl4 (ENSCGRG00001013642) #34	S1pr2 (ENSCGRG00001016552) #35	Dnmt1 (ENSCGRG00001022275) #36	EIF3G (ENSCGRG00001017726)	Ppan (ENSCGRG00001015990)
Golden Hamster	MODERN SPECIES	700	Ldlr (ENSMAUG00000018237)	Smarca4 (ENSMAUG00000020731) #7	Timm29 (ENSMAUG00000016236) #9	Yipf2 (ENSMAUG00000019367) #10	Carm1 (ENSMAUG00000020443) #11	Tmed1 (ENSMAUG00000008835) #13	ENSMAUG00000013381 #14	ENSMAUG00000019307 #14	Qtrt1 (ENSMAUG00000020794) #15	Ilf3 (ENSMAUG00000020405) #16	Slc44a2 (ENSMAUG00000010847) #17	Ap1m2 (ENSMAUG00000012894) #18	Cdkn2d (ENSMAUG00000001161) #19	Kri1 (ENSMAUG00000011484) #20	Atg4d (ENSMAUG00000020205) #21	S1pr5 (ENSMAUG00000000259) #22	Keap1 (ENSMAUG00000007914) #23	Pde4a (ENSMAUG00000013828) #24	Cdc37 (ENSMAUG00000008486) #25	Tyk2 (ENSMAUG00000017865) #26	Raver1 (ENSMAUG00000017948) #28	Fdx2 (ENSMAUG00000016958) #29	Zglp1 (ENSMAUG00000000170) #30	Icam5 (ENSMAUG00000001262) #31	Icam4 (ENSMAUG00000002833) #32	Icam1 (ENSMAUG00000006369) #33	Mrpl4 (ENSMAUG00000013451) #34	S1pr2 (ENSMAUG00000016946) #35	Dnmt1 (ENSMAUG00000019579) #36	Eif3g (ENSMAUG00000003373)	Ppan (ENSMAUG00000000310)
Cricetidae_B	ANCESTRAL SPECIES	16	ENSGT00940000161046	ENSGT00940000156887 #7	ENSGT00390000018541 #9	ENSGT00390000010157.b #10	ENSGT00940000160377 #11	ENSGT00390000008862 #12	ENSGT00940000158445 #13	ENSGT00940000155764.C #14	ENSGT00530000063679.B #15	ENSGT00940000156719 #16	ENSGT00940000158178 #17	ENSGT00940000159089 #18	ENSGT00940000159801.B #19	ENSGT00390000005605 #20	ENSGT00530000063000.a.a.b #21	ENSGT01050000244887.A.a.a.a #22	ENSGT00940000159543 #23	ENSGT00940000159788.b #24	ENSGT00390000013443.c #25	ENSGT00940000159869 #26	ENSGT00940000160550 #28	ENSGT00940000161143 #29	ENSGT00470000042444 #30	ENSGT00940000162184 #31	ENSGT00940000162431 #32	ENSGT00940000162311 #33	ENSGT00390000014512 #34	ENSGT01050000244887.A.a.a.b #35	ENSGT00390000005100 #36	ENSGT00510000047802	ENSGT00530000064158
Northern American deer mouse	MODERN SPECIES	20	Ldlr (ENSPEMG00000021260)	Smarca4 (ENSPEMG00000020389) #7	Timm29 (ENSPEMG00000031004) #9	Yipf2 (ENSPEMG00000022941) #10	Carm1 (ENSPEMG00000023286) #11	AB124611 (ENSPEMG00000011218) #12	Tmed1 (ENSPEMG00000014342) #13	Dnm2 (ENSPEMG00000022844) #14	Qtrt1 (ENSPEMG00000009897) #15	ENSPEMG00000000465 #16	Slc44a2 (ENSPEMG00000008320) #17	Ap1m2 (ENSPEMG00000023352) #18	Cdkn2d (ENSPEMG00000030087) #19	Kri1 (ENSPEMG00000024201) #20	Atg4d (ENSPEMG00000004633) #21	S1pr5 (ENSPEMG00000015460) #22	Keap1 (ENSPEMG00000022907) #23	Pde4a (ENSPEMG00000023071) #24	Cdc37 (ENSPEMG00000023710) #25	Tyk2 (ENSPEMG00000011071) #26	Raver1 (ENSPEMG00000016411) #28	Fdx2 (ENSPEMG00000023101) #29	Zglp1 (ENSPEMG00000023438) #30	Icam5 (ENSPEMG00000008387) #31	Icam4 (ENSPEMG00000023979) #32	Icam1 (ENSPEMG00000024025) #33	Mrpl4 (ENSPEMG00000017474) #34	S1pr2 (ENSPEMG00000030885) #35	ENSPEMG00000004880 #36	Eif3g (ENSPEMG00000001978)	Ppan (ENSPEMG00000015393)
Prairie vole	MODERN SPECIES	13	Ldlr (ENSMOCG00000016718)	Smarca4 (ENSMOCG00000022209) #7	ENSMOCG00000019898 #9	Yipf2 (ENSMOCG00000017806) #10	Carm1 (ENSMOCG00000004215) #11	AB124611 (ENSMOCG00000014256) #12	Tmed1 (ENSMOCG00000007785) #13	Dnm2 (ENSMOCG00000018580) #14	Qtrt1 (ENSMOCG00000019584) #15	Ilf3 (ENSMOCG00000018740) #16	Slc44a2 (ENSMOCG00000014267) #17	Ap1m2 (ENSMOCG00000000638) #18	Cdkn2d (ENSMOCG00000016257) #19	Kri1 (ENSMOCG00000017013) #20	Atg4d (ENSMOCG00000002959) #21	S1pr5 (ENSMOCG00000005836) #22	Keap1 (ENSMOCG00000009445) #23	Pde4a (ENSMOCG00000007095) #24	Cdc37 (ENSMOCG00000020700) #25	Tyk2 (ENSMOCG00000017994) #26	Raver1 (ENSMOCG00000015553) #28	Fdx2 (ENSMOCG00000014317) #29	Zglp1 (ENSMOCG00000011301) #30	Icam5 (ENSMOCG00000002626) #31	Icam4 (ENSMOCG00000019163) #32	ENSMOCG00000013950	Icam1 (ENSMOCG00000013230) #33	Mrpl4 (ENSMOCG00000014755) #34	S1pr2 (ENSMOCG00000013385) #35	Dnmt1 (ENSMOCG00000013903) #36	ENSMOCG00000016861
Murinae	ANCESTRAL SPECIES	3	ENSGT00940000161046	ENSGT00940000156887 #7	ENSGT00390000018541 #9	ENSGT00390000010157.b #10	ENSGT00940000160377 #11	ENSGT00390000008862 #12	ENSGT00940000158445 #13	ENSGT00940000155764.C #14	ENSGT00530000063679.B #15	ENSGT00940000156719 #16	ENSGT00940000158178 #17	ENSGT00940000159089 #18	ENSGT00940000159801.B #19	ENSGT00390000005605 #20	ENSGT00530000063000.a.a.b #21	ENSGT01050000244887.A.a.a.a #22	ENSGT00940000159543 #23	ENSGT00940000159788.b #24	ENSGT00390000013443.c #25	ENSGT00940000159869 #26	ENSGT00940000160550 #28	ENSGT00940000161143 #29	ENSGT00470000042444 #30	ENSGT00940000162184 #31	ENSGT00940000162431 #32	ENSGT00940000162311 #33	ENSGT00390000014512 #34	ENSGT01050000244887.A.a.a.b #35	ENSGT00390000005100 #36	ENSGT00510000047802	ENSGT00530000064158
Mus	ANCESTRAL SPECIES	4	ENSGT00940000161046	ENSGT00940000156887 #7	ENSGT00390000018541 #9	ENSGT00390000010157.b #10	ENSGT00940000160377 #11	ENSGT00390000008862 #12	ENSGT00940000158445 #13	ENSGT00940000155764.C #14	ENSGT00530000063679.B #15	ENSGT00940000156719 #16	ENSGT00940000158178 #17	ENSGT00940000159089 #18	ENSGT00940000159801.B #19	ENSGT00390000005605 #20	ENSGT00530000063000.a.a.b #21	ENSGT01050000244887.A.a.a.a #22	ENSGT00940000159543 #23	ENSGT00940000159788.b #24	ENSGT00390000013443.c #25	ENSGT00940000159869 #26	ENSGT00940000160550 #28	ENSGT00940000161143 #29	ENSGT00470000042444 #30	ENSGT00940000162184 #31	ENSGT00940000162431 #32	ENSGT00940000162311 #33	ENSGT00390000014512 #34	ENSGT01050000244887.A.a.a.b #35	ENSGT00390000005100 #36	ENSGT00510000047802	ENSGT00530000064158
Mus_A	ANCESTRAL SPECIES	4	ENSGT00940000161046	ENSGT00940000156887 #7	ENSGT00390000018541 #9	ENSGT00390000010157.b #10	ENSGT00940000160377 #11	ENSGT00390000008862 #12	ENSGT00940000158445 #13	ENSGT00940000155764.C #14	ENSGT00530000063679.B #15	ENSGT00940000156719 #16	ENSGT00940000158178 #17	ENSGT00940000159089 #18	ENSGT00940000159801.B #19	ENSGT00390000005605 #20	ENSGT00530000063000.a.a.b #21	ENSGT01050000244887.A.a.a.a #22	ENSGT00940000159543 #23	ENSGT00940000159788.b #24	ENSGT00390000013443.c #25	ENSGT00940000159869 #26	ENSGT00940000160550 #28	ENSGT00940000161143 #29	ENSGT00470000042444 #30	ENSGT00940000162184 #31	ENSGT00940000162431 #32	ENSGT00940000162311 #33	ENSGT00390000014512 #34	ENSGT01050000244887.A.a.a.b #35	ENSGT00390000005100 #36	ENSGT00510000047802	ENSGT00530000064158
Mus_B	ANCESTRAL SPECIES	3	ENSGT00940000161046	ENSGT00940000156887 #7	ENSGT00390000018541 #9	ENSGT00390000010157.b #10	ENSGT00940000160377 #11	ENSGT00390000008862 #12	ENSGT00940000158445 #13	ENSGT00940000155764.C #14	ENSGT00530000063679.B #15	ENSGT00940000156719 #16	ENSGT00940000158178 #17	ENSGT00940000159089 #18	ENSGT00940000159801.B #19	ENSGT00390000005605 #20	ENSGT00530000063000.a.a.b #21	ENSGT01050000244887.A.a.a.a #22	ENSGT00940000159543 #23	ENSGT00940000159788.b #24	ENSGT00390000013443.c #25	ENSGT00940000159869 #26	ENSGT00940000160550 #28	ENSGT00940000161143.c #29	ENSGT00470000042444 #30	ENSGT00940000162184 #31	ENSGT00940000162431 #32	ENSGT00940000162311 #33	ENSGT00390000014512 #34	ENSGT01050000244887.A.a.a.b #35	ENSGT00390000005100 #36	ENSGT00510000047802	ENSGT00530000064158
Mus_C	ANCESTRAL SPECIES	8	ENSGT00940000161046	ENSGT00940000156887 #7	ENSGT00390000018541 #9	ENSGT00390000010157.b #10	ENSGT00940000160377 #11	ENSGT00390000008862 #12	ENSGT00940000158445 #13	ENSGT00940000155764.C #14	ENSGT00530000063679.B #15	ENSGT00940000156719 #16	ENSGT00940000158178 #17	ENSGT00940000159089 #18	ENSGT00940000159801.B #19	ENSGT00390000005605 #20	ENSGT00530000063000.a.a.b #21	ENSGT01050000244887.A.a.a.a #22	ENSGT00940000159543 #23	ENSGT00940000159788.b #24	ENSGT00390000013443.c #25	ENSGT00940000159869 #26	ENSGT00940000160550 #28	ENSGT00940000161143.c #29	ENSGT00470000042444 #30	ENSGT00940000162184 #31	ENSGT00940000162431 #32	ENSGT00940000162311 #33	ENSGT00390000014512 #34	ENSGT01050000244887.A.a.a.b #35	ENSGT00390000005100 #36	ENSGT00510000047802	ENSGT00530000064158
spretus	MODERN SPECIES	18	Ldlr (MGP_SPRETEiJ_G0033004)	Smarca4 (MGP_SPRETEiJ_G0033003) #7	Timm29 (MGP_SPRETEiJ_G0033002) #9	Yipf2 (MGP_SPRETEiJ_G0033001) #10	Carm1 (MGP_SPRETEiJ_G0033000) #11	AB124611 (MGP_SPRETEiJ_G0032999) #12	Tmed1 (MGP_SPRETEiJ_G0032998) #13	Dnm2 (MGP_SPRETEiJ_G0032997) #14	Qtrt1 (MGP_SPRETEiJ_G0032996) #15	Ilf3 (MGP_SPRETEiJ_G0032995) #16	Slc44a2 (MGP_SPRETEiJ_G0032994) #17	Ap1m2 (MGP_SPRETEiJ_G0032993) #18	Cdkn2d (MGP_SPRETEiJ_G0032992) #19	Kri1 (MGP_SPRETEiJ_G0032991) #20	Atg4d (MGP_SPRETEiJ_G0032990) #21	S1pr5 (MGP_SPRETEiJ_G0032989) #22	Keap1 (MGP_SPRETEiJ_G0032988) #23	Pde4a (MGP_SPRETEiJ_G0032987) #24	Cdc37 (MGP_SPRETEiJ_G0032986) #25	Tyk2 (MGP_SPRETEiJ_G0032985) #26	Raver1 (MGP_SPRETEiJ_G0032984) #28	Fdx2 (MGP_SPRETEiJ_G0032983) #29	Zglp1 (MGP_SPRETEiJ_G0032982) #30	Icam5 (MGP_SPRETEiJ_G0032981) #31	Icam4 (MGP_SPRETEiJ_G0032980) #32	Icam1 (MGP_SPRETEiJ_G0032979) #33	Mrpl4 (MGP_SPRETEiJ_G0032978) #34	S1pr2 (MGP_SPRETEiJ_G0032977) #35	Dnmt1 (MGP_SPRETEiJ_G0032976) #36	Eif3g (MGP_SPRETEiJ_G0032975)	Ppan (MGP_SPRETEiJ_G0032974)
Steppe mouse	MODERN SPECIES	3115	Spc24 (ENSMSIG00000015419)	Ldlr (ENSMSIG00000015469)	Smarca4 (ENSMSIG00000015575) #7	Carm1 (ENSMSIG00000015744) #11	Yipf2 (ENSMSIG00000015831) #10	AB124611 (ENSMSIG00000015890) #12	Tmed1 (ENSMSIG00000015965) #13	Dnm2 (ENSMSIG00000015982) #14	Qtrt1 (ENSMSIG00000016262) #15	Ilf3 (ENSMSIG00000016302) #16	Slc44a2 (ENSMSIG00000016395) #17	Ap1m2 (ENSMSIG00000016529) #18	Cdkn2d (ENSMSIG00000016582) #19	Kri1 (ENSMSIG00000016603) #20	Atg4d (ENSMSIG00000016653) #21	S1pr5 (ENSMSIG00000016710) #22	Keap1 (ENSMSIG00000016713) #23	Pde4a (ENSMSIG00000016751) #24	Cdc37 (ENSMSIG00000016922) #25	Tyk2 (ENSMSIG00000016941) #26	Raver1 (ENSMSIG00000017020) #28	Fdx2 (ENSMSIG00000017053) #29	Zglp1 (ENSMSIG00000017087) #30	Icam5 (ENSMSIG00000017102) #31	Icam4 (ENSMSIG00000017145) #32	Icam1 (ENSMSIG00000017165) #33	Mrpl4 (ENSMSIG00000017179) #34	S1pr2 (ENSMSIG00000017197) #35	Dnmt1 (ENSMSIG00000017200) #36	Eif3g (ENSMSIG00000017537)	Ppan (ENSMSIG00000017577)
Mouse	MODERN SPECIES	18	Ldlr (ENSMUSG00000032193)	Smarca4 (ENSMUSG00000032187) #7	Timm29 (ENSMUSG00000048429) #9	Yipf2 (ENSMUSG00000032182) #10	Carm1 (ENSMUSG00000032185) #11	AB124611 (ENSMUSG00000057191) #12	Tmed1 (ENSMUSG00000032180) #13	Dnm2 (ENSMUSG00000033335) #14	Qtrt1 (ENSMUSG00000002825) #15	Ilf3 (ENSMUSG00000032178) #16	Slc44a2 (ENSMUSG00000057193) #17	Ap1m2 (ENSMUSG00000003309) #18	Cdkn2d (ENSMUSG00000096472) #19	Kri1 (ENSMUSG00000035047) #20	Atg4d (ENSMUSG00000002820) #21	S1pr5 (ENSMUSG00000045087) #22	Keap1 (ENSMUSG00000003308) #23	Pde4a (ENSMUSG00000032177) #24	Cdc37 (ENSMUSG00000019471) #25	Tyk2 (ENSMUSG00000032175) #26	Raver1 (ENSMUSG00000010205) #28	Fdx2 (ENSMUSG00000079677) #29	Zglp1 (ENSMUSG00000079681) #30	Icam5 (ENSMUSG00000032174) #31	Icam4 (ENSMUSG00000001014) #32	Icam1 (ENSMUSG00000037405) #33	Mrpl4 (ENSMUSG00000003299) #34	S1pr2 (ENSMUSG00000043895) #35	Dnmt1 (ENSMUSG00000004099) #36	Eif3g (ENSMUSG00000070319)	Ppan (ENSMUSG00000004100)
Ryukyu mouse	MODERN SPECIES	18	Ldlr (MGP_CAROLIEiJ_G0031880)	Smarca4 (MGP_CAROLIEiJ_G0031879) #7	Timm29 (MGP_CAROLIEiJ_G0031878) #9	Yipf2 (MGP_CAROLIEiJ_G0031877) #10	Carm1 (MGP_CAROLIEiJ_G0031876) #11	AB124611 (MGP_CAROLIEiJ_G0031875) #12	Tmed1 (MGP_CAROLIEiJ_G0031874) #13	Dnm2 (MGP_CAROLIEiJ_G0031873) #14	Qtrt1 (MGP_CAROLIEiJ_G0031872) #15	Ilf3 (MGP_CAROLIEiJ_G0031871) #16	Slc44a2 (MGP_CAROLIEiJ_G0031870) #17	Ap1m2 (MGP_CAROLIEiJ_G0031869) #18	Cdkn2d (MGP_CAROLIEiJ_G0031868) #19	Kri1 (MGP_CAROLIEiJ_G0031867) #20	Atg4d (MGP_CAROLIEiJ_G0031866) #21	S1pr5 (MGP_CAROLIEiJ_G0031865) #22	Keap1 (MGP_CAROLIEiJ_G0031864) #23	Pde4a (MGP_CAROLIEiJ_G0031863) #24	Cdc37 (MGP_CAROLIEiJ_G0031862) #25	Tyk2 (MGP_CAROLIEiJ_G0031861) #26	Raver1 (MGP_CAROLIEiJ_G0031860) #28	Fdx2 (MGP_CAROLIEiJ_G0031859) #29	Zglp1 (MGP_CAROLIEiJ_G0031858) #30	Icam5 (MGP_CAROLIEiJ_G0031857) #31	Icam4 (MGP_CAROLIEiJ_G0031856) #32	Icam1 (MGP_CAROLIEiJ_G0031855) #33	Mrpl4 (MGP_CAROLIEiJ_G0031854) #34	S1pr2 (MGP_CAROLIEiJ_G0031853) #35	Dnmt1 (MGP_CAROLIEiJ_G0031852) #36	Eif3g (MGP_CAROLIEiJ_G0031851)	Ppan (MGP_CAROLIEiJ_G0031850)
Shrew mouse	MODERN SPECIES	1	Ldlr (MGP_PahariEiJ_G0014746)	Smarca4 (MGP_PahariEiJ_G0014745) #7	Timm29 (MGP_PahariEiJ_G0014744) #9	Yipf2 (MGP_PahariEiJ_G0014743) #10	Carm1 (MGP_PahariEiJ_G0014742) #11	AB124611 (MGP_PahariEiJ_G0014741) #12	Tmed1 (MGP_PahariEiJ_G0014740) #13	Dnm2 (MGP_PahariEiJ_G0014739) #14	Qtrt1 (MGP_PahariEiJ_G0014738) #15	Ilf3 (MGP_PahariEiJ_G0014737) #16	Slc44a2 (MGP_PahariEiJ_G0014736) #17	Ap1m2 (MGP_PahariEiJ_G0014735) #18	Cdkn2d (MGP_PahariEiJ_G0014734) #19	Kri1 (MGP_PahariEiJ_G0014733) #20	Atg4d (MGP_PahariEiJ_G0014732) #21	S1pr5 (MGP_PahariEiJ_G0014731) #22	Keap1 (MGP_PahariEiJ_G0014730) #23	Pde4a (MGP_PahariEiJ_G0014729) #24	Cdc37 (MGP_PahariEiJ_G0014728) #25	Tyk2 (MGP_PahariEiJ_G0014727) #26	Raver1 (MGP_PahariEiJ_G0014726) #28	Fdx2 (MGP_PahariEiJ_G0014725) #29	Zglp1 (MGP_PahariEiJ_G0014724) #30	Icam5 (MGP_PahariEiJ_G0014723) #31	Icam4 (MGP_PahariEiJ_G0014722) #32	Icam1 (MGP_PahariEiJ_G0014721) #33	Mrpl4 (MGP_PahariEiJ_G0014720) #34	S1pr2 (MGP_PahariEiJ_G0014719) #35	Dnmt1 (MGP_PahariEiJ_G0014718) #36	Eif3g (MGP_PahariEiJ_G0014717)	Ppan (MGP_PahariEiJ_G0014716)
Rat	MODERN SPECIES	18	Spc24 (ENSRNOG00000029862)	Ldlr (ENSRNOG00000009946)	Smarca4 (ENSRNOG00000009271) #7	Yipf2 (ENSRNOG00000022043) #10	Carm1 (ENSRNOG00000031129) #11	LOC691141 (ENSRNOG00000033256) #12	Tmed1 (ENSRNOG00000008037) #13	Dnm2 (ENSRNOG00000007649) #14	Qtrt1 (ENSRNOG00000007158) #15	Ilf3 (ENSRNOG00000022741) #16	Slc44a2 (ENSRNOG00000031824) #17	Ap1m2 (ENSRNOG00000043093) #18	Cdkn2d (ENSRNOG00000064248) #19	Kri1 (ENSRNOG00000057447) #20	Atg4d (ENSRNOG00000047625) #21	S1pr5 (ENSRNOG00000020901) #22	Keap1 (ENSRNOG00000020878) #23	Pde4a (ENSRNOG00000020828) #24	Cdc37 (ENSRNOG00000033426) #25	Tyk2 (ENSRNOG00000032948) #26	Raver1 (ENSRNOG00000020710) #28	Fdx2 (ENSRNOG00000023020) #29	Zglp1 (ENSRNOG00000042601) #30	Icam5 (ENSRNOG00000020694) #31	Icam4 (ENSRNOG00000042078) #32	Icam1 (ENSRNOG00000020679) #33	Mrpl4 (ENSRNOG00000020659) #34	S1pr2 (ENSRNOG00000020653) #35	Dnmt1 (ENSRNOG00000039859) #36	Eif3g (ENSRNOG00000020619)	Ppan (ENSRNOG00000020608)
Upper Galilee mountains blind mole rat	MODERN SPECIES	1514						ENSNGAG00000001659	Tmed1 (ENSNGAG00000004594) #13	Dnm2 (ENSNGAG00000016299) #14	Qtrt1 (ENSNGAG00000012294) #15	ENSNGAG00000009786 #16	Slc44a2 (ENSNGAG00000000063) #17	Ap1m2 (ENSNGAG00000013508) #18	Cdkn2d (ENSNGAG00000020636) #19	Kri1 (ENSNGAG00000000508) #20	Atg4d (ENSNGAG00000000291) #21	S1pr5 (ENSNGAG00000011944) #22	Keap1 (ENSNGAG00000012825) #23	Pde4a (ENSNGAG00000016357) #24	Cdc37 (ENSNGAG00000017380) #25	Tyk2 (ENSNGAG00000003917) #26	Raver1 (ENSNGAG00000001260) #28	Fdx2 (ENSNGAG00000009605) #29	Zglp1 (ENSNGAG00000015996) #30	Icam5 (ENSNGAG00000017094) #31	Icam4 (ENSNGAG00000001140) #32	Icam1 (ENSNGAG00000014166) #33	Mrpl4 (ENSNGAG00000014705) #34	S1pr2 (ENSNGAG00000000186) #35	Dnmt1 (ENSNGAG00000010277) #36	Eif3g (ENSNGAG00000012159)	Ppan (ENSNGAG00000012813)
Lesser Egyptian jerboa	MODERN SPECIES	143	Ldlr (ENSJJAG00000016661)	Smarca4 (ENSJJAG00000012877) #7	Timm29 (ENSJJAG00000010999) #9	Yipf2 (ENSJJAG00000010227) #10	Carm1 (ENSJJAG00000008047) #11	AB124611 (ENSJJAG00000002332) #12	Tmed1 (ENSJJAG00000018485) #13	Dnm2 (ENSJJAG00000015316) #14	Qtrt1 (ENSJJAG00000013307) #15	ENSJJAG00000013051 #16	Slc44a2 (ENSJJAG00000011453) #17	Ap1m2 (ENSJJAG00000009862) #18	Cdkn2d (ENSJJAG00000008566) #19	Kri1 (ENSJJAG00000002972) #20	Atg4d (ENSJJAG00000000341) #21	S1pr5 (ENSJJAG00000013383) #22	Keap1 (ENSJJAG00000000119) #23	Pde4a (ENSJJAG00000022269) #24	Cdc37 (ENSJJAG00000021223) #25	Tyk2 (ENSJJAG00000020250) #26	Raver1 (ENSJJAG00000018219) #28	Fdx2 (ENSJJAG00000017700) #29	Zglp1 (ENSJJAG00000017375) #30	Icam5 (ENSJJAG00000016403) #31	Icam4 (ENSJJAG00000016127) #32	Icam1 (ENSJJAG00000014180) #33	Mrpl4 (ENSJJAG00000010573) #34	ENSJJAG00000013403	S1pr2 (ENSJJAG00000013342) #35	ENSJJAG00000009832	Dnmt1 (ENSJJAG00000021067) #36
Rodentia_A	ANCESTRAL SPECIES	16	ENSGT00940000156887 #7	ENSGT00390000018541 #9	ENSGT00390000010157.b #10	ENSGT00940000160377 #11	ENSGT00390000008862 #12	ENSGT00940000158445 #13	ENSGT00940000155764.C #14	ENSGT00530000063679.B #15	ENSGT00940000156719 #16	ENSGT00900000143551	ENSGT00940000158178 #17	ENSGT00940000159089 #18	ENSGT00940000159801.B #19	ENSGT00390000005605 #20	ENSGT00530000063000.a.a.b #21	ENSGT01050000244887.A.a.a.a #22	ENSGT00940000159543 #23	ENSGT00940000159788.b #24	ENSGT00390000013443.c #25	ENSGT00940000159869 #26	ENSGT00940000159005 #27	ENSGT00940000160550 #28	ENSGT00940000161143 #29	ENSGT00470000042444 #30	ENSGT00940000162184 #31	ENSGT00940000162431 #32	ENSGT00940000162311 #33	ENSGT00390000014512 #34	ENSGT01050000244887.A.a.a.b #35	ENSGT00940000172524	ENSGT00390000005100 #36
Hystricomorpha	ANCESTRAL SPECIES	19	ENSGT00940000156887 #7	ENSGT00390000018541 #9	ENSGT00390000010157.b #10	ENSGT00940000160377 #11	ENSGT00390000008862 #12	ENSGT00940000158445 #13	ENSGT00940000155764.C #14	ENSGT00530000063679.B #15	ENSGT00940000156719 #16	ENSGT00940000158178 #17	ENSGT00900000143551	ENSGT00940000159089 #18	ENSGT00940000159801.B #19	ENSGT00390000005605 #20	ENSGT00530000063000.a.a.b #21	ENSGT01050000244887.A.a.a.a #22	ENSGT00940000159543 #23	ENSGT00940000159788.b #24	ENSGT00390000013443.c #25	ENSGT00940000159869 #26	ENSGT00940000159005 #27	ENSGT00940000160550 #28	ENSGT00940000161143 #29	ENSGT00470000042444 #30	ENSGT00940000162184 #31	ENSGT00940000162431 #32	ENSGT00940000162311 #33	ENSGT00390000014512 #34	ENSGT01050000244887.A.a.a.b #35	ENSGT00940000172524	ENSGT00390000005100 #36
Hystricomorpha_a	ANCESTRAL SPECIES	15	ENSGT00940000161046	ENSGT00940000156887 #7	ENSGT00390000018541 #9	ENSGT00390000010157.b #10	ENSGT00940000160377 #11	ENSGT00390000008862 #12	ENSGT00940000158445 #13	ENSGT00940000155764.C #14	ENSGT00530000063679.B #15	ENSGT00940000156719 #16	ENSGT00940000158178 #17	ENSGT00940000159089 #18	ENSGT00940000159801.B #19	ENSGT00390000005605 #20	ENSGT00530000063000.a.a.b #21	ENSGT01050000244887.A.a.a.a #22	ENSGT00940000159543 #23	ENSGT00940000159788.b #24	ENSGT00390000013443.c #25	ENSGT00940000159869 #26	ENSGT00940000160550 #28	ENSGT00940000161143 #29	ENSGT00470000042444 #30	ENSGT00940000162184 #31	ENSGT00940000162431 #32	ENSGT00940000162311 #33	ENSGT00390000014512 #34	ENSGT01050000244887.A.a.a.b #35	ENSGT00390000005100 #36	ENSGT00510000047802	ENSGT00530000064158
Hystricomorpha_b	ANCESTRAL SPECIES	17	ENSGT00940000161046	ENSGT00940000156887 #7	ENSGT00390000018541 #9	ENSGT00390000010157.b #10	ENSGT00940000160377 #11	ENSGT00390000008862 #12	ENSGT00940000158445 #13	ENSGT00940000155764.C #14	ENSGT00530000063679.B #15	ENSGT00940000156719 #16	ENSGT00940000158178 #17	ENSGT00940000159089 #18	ENSGT00940000159801.B #19	ENSGT00390000005605 #20	ENSGT00530000063000.a.a.b #21	ENSGT01050000244887.A.a.a.a #22	ENSGT00940000159543 #23	ENSGT00940000159788.b #24	ENSGT00390000013443.c #25	ENSGT00940000159869 #26	ENSGT00940000160550 #28	ENSGT00940000161143 #29	ENSGT00470000042444 #30	ENSGT00940000162184 #31	ENSGT00940000162431 #32	ENSGT00940000162311 #33	ENSGT00390000014512 #34	ENSGT01050000244887.A.a.a.b #35	ENSGT00390000005100 #36	ENSGT00510000047802	ENSGT00530000064158
Long-tailed chinchilla	MODERN SPECIES	202	LDLR (ENSCLAG00000015453)	SMARCA4 (ENSCLAG00000011946) #7	TIMM29 (ENSCLAG00000014951) #9	YIPF2 (ENSCLAG00000011701) #10	CARM1 (ENSCLAG00000011012) #11	C19orf38 (ENSCLAG00000009782) #12	TMED1 (ENSCLAG00000008870) #13	DNM2 (ENSCLAG00000008156) #14	QTRT1 (ENSCLAG00000009859) #15	ILF3 (ENSCLAG00000011537) #16	SLC44A2 (ENSCLAG00000017339) #17	AP1M2 (ENSCLAG00000015388) #18	CDKN2D (ENSCLAG00000016365) #19	KRI1 (ENSCLAG00000006582) #20	ATG4D (ENSCLAG00000004668) #21	S1PR5 (ENSCLAG00000011673) #22	KEAP1 (ENSCLAG00000011003) #23	PDE4A (ENSCLAG00000005445) #24	CDC37 (ENSCLAG00000004550) #25	TYK2 (ENSCLAG00000013417) #26	RAVER1 (ENSCLAG00000009336) #28	FDX2 (ENSCLAG00000007657) #29	ZGLP1 (ENSCLAG00000006578) #30	ICAM5 (ENSCLAG00000004832) #31	ICAM4 (ENSCLAG00000006269) #32	ICAM1 (ENSCLAG00000005350) #33	MRPL4 (ENSCLAG00000004552) #34	S1PR2 (ENSCLAG00000017915) #35	DNMT1 (ENSCLAG00000009575) #36	EIF3G (ENSCLAG00000007381)	PPAN (ENSCLAG00000009362)
Degu	MODERN SPECIES	91	LDLR (ENSODEG00000015446)	SMARCA4 (ENSODEG00000017127) #7	TIMM29 (ENSODEG00000015866) #9	YIPF2 (ENSODEG00000015957) #10	CARM1 (ENSODEG00000015950) #11	C19orf38 (ENSODEG00000015704) #12	TMED1 (ENSODEG00000016351) #13	DNM2 (ENSODEG00000016299) #14	QTRT1 (ENSODEG00000015894) #15	ILF3 (ENSODEG00000015951) #16	SLC44A2 (ENSODEG00000016516) #17	AP1M2 (ENSODEG00000016673) #18	CDKN2D (ENSODEG00000016627) #19	KRI1 (ENSODEG00000016083) #20	ATG4D (ENSODEG00000016344) #21	S1PR5 (ENSODEG00000020555) #22	KEAP1 (ENSODEG00000016128) #23	PDE4A (ENSODEG00000016246) #24	CDC37 (ENSODEG00000016453) #25	TYK2 (ENSODEG00000016347) #26	RAVER1 (ENSODEG00000016260) #28	FDX2 (ENSODEG00000016614) #29	ENSODEG00000016522 #30	ICAM5 (ENSODEG00000016352) #31	ICAM4 (ENSODEG00000016513) #32	ICAM1 (ENSODEG00000016545) #33	MRPL4 (ENSODEG00000016194) #34	S1PR2 (ENSODEG00000020460) #35	DNMT1 (ENSODEG00000016929) #36	ENSODEG00000016542	PPAN (ENSODEG00000016743)
Naked mole-rat female	MODERN SPECIES	21	TIMM29 (ENSHGLG00000031869) #9	YIPF2 (ENSHGLG00000005585) #10	CARM1 (ENSHGLG00000007754) #11	C19orf38 (ENSHGLG00000048163) #12	TMED1 (ENSHGLG00000034031) #13	DNM2 (ENSHGLG00000014318) #14	QTRT1 (ENSHGLG00000018553) #15	ENSHGLG00000019494 #16	ENSHGLG00000036847	SLC44A2 (ENSHGLG00000011332) #17	ENSHGLG00000044071	AP1M2 (ENSHGLG00000017835) #18	CDKN2D (ENSHGLG00000013311) #19	KRI1 (ENSHGLG00000015240) #20	ATG4D (ENSHGLG00000007086) #21	S1PR5 (ENSHGLG00000045386) #22	KEAP1 (ENSHGLG00000015222) #23	PDE4A (ENSHGLG00000015878) #24	CDC37 (ENSHGLG00000050693) #25	TYK2 (ENSHGLG00000015161) #26	ICAM3 (ENSHGLG00000040279) #27	RAVER1 (ENSHGLG00000015460) #28	FDX2 (ENSHGLG00000018345) #29	ZGLP1 (ENSHGLG00000043835) #30	ICAM5 (ENSHGLG00000015929) #31	ICAM4 (ENSHGLG00000042569) #32	ICAM1 (ENSHGLG00000010281) #33	S1PR2 (ENSHGLG00000041926) #35	MRPL4 (ENSHGLG00000007839) #34	ENSHGLG00000037635	DNMT1 (ENSHGLG00000018262) #36
Sciuridae	ANCESTRAL SPECIES	20	ENSGT00940000156887 #7	ENSGT00390000018541 #9	ENSGT00390000010157.b #10	ENSGT00940000160377 #11	ENSGT00390000008862 #12	ENSGT00940000158445 #13	ENSGT00940000155764.C #14	ENSGT00530000063679.B #15	ENSGT00940000156719 #16	ENSGT00900000143551	ENSGT00940000158178 #17	ENSGT00940000159089 #18	ENSGT00940000159801.B #19	ENSGT00390000005605 #20	ENSGT00530000063000.a.a.b #21	ENSGT01050000244887.A.a.a.a #22	ENSGT00940000159543 #23	ENSGT00940000159788.b #24	ENSGT00390000013443.c #25	ENSGT00940000159869 #26	ENSGT00940000159005 #27	ENSGT00940000160550 #28	ENSGT00940000161143.b #29	ENSGT00470000042444 #30	ENSGT00940000162184 #31	ENSGT00940000162431 #32	ENSGT00940000162311 #33	ENSGT00390000014512 #34	ENSGT01050000244887.A.a.a.b #35	ENSGT00390000005100 #36	ENSGT00510000047802
Eurasian red squirrel	MODERN SPECIES	7	SPC24 (ENSSVLG00005024002)	LDLR (ENSSVLG00005023861)	YIPF2 (ENSSVLG00005022404) #10	CARM1 (ENSSVLG00005022155) #11	C19orf38 (ENSSVLG00005022088) #12	TMED1 (ENSSVLG00005022048) #13	DNM2 (ENSSVLG00005021854) #14	QTRT1 (ENSSVLG00005021743) #15	ILF3 (ENSSVLG00005021649) #16	ENSSVLG00005021542	SLC44A2 (ENSSVLG00005021433) #17	ENSSVLG00005021219 #18	CDKN2D (ENSSVLG00005021167) #19	KRI1 (ENSSVLG00005020995) #20	ATG4D (ENSSVLG00005020947) #21	S1PR5 (ENSSVLG00005020921) #22	KEAP1 (ENSSVLG00005020889) #23	PDE4A (ENSSVLG00005020638) #24	CDC37 (ENSSVLG00005020567) #25	TYK2 (ENSSVLG00005020519) #26	ICAM3 (ENSSVLG00005020483) #27	RAVER1 (ENSSVLG00005020415) #28	FDX2 (ENSSVLG00005020343) #29	ZGLP1 (ENSSVLG00005020288) #30	ICAM5 (ENSSVLG00005020255) #31	ICAM4 (ENSSVLG00005020213) #32	ICAM1 (ENSSVLG00005020131) #33	MRPL4 (ENSSVLG00005020006) #34	S1PR2 (ENSSVLG00005019959) #35	DNMT1 (ENSSVLG00005019922) #36	EIF3G (ENSSVLG00005019867)
Marmotini	ANCESTRAL SPECIES	41	ENSGT00940000161046	ENSGT00940000156887 #7	ENSGT00390000018541 #9	ENSGT00390000010157.b #10	ENSGT00940000160377 #11	ENSGT00390000008862 #12	ENSGT00940000158445 #13	ENSGT00940000155764.C #14	ENSGT00530000063679.B #15	ENSGT00940000156719 #16	ENSGT00940000158178 #17	ENSGT00940000159089 #18	ENSGT00940000159801.B #19	ENSGT00390000005605 #20	ENSGT00530000063000.a.a.b #21	ENSGT01050000244887.A.a.a.a #22	ENSGT00940000159543 #23	ENSGT00940000159788.b #24	ENSGT00390000013443.c #25	ENSGT00940000159869 #26	ENSGT00940000159005 #27	ENSGT00940000160550 #28	ENSGT00940000161143.b #29	ENSGT00470000042444 #30	ENSGT00940000162184 #31	ENSGT00940000162431 #32	ENSGT00940000162311 #33	ENSGT00390000014512 #34	ENSGT01050000244887.A.a.a.b #35	ENSGT00390000005100 #36	ENSGT00510000047802
Alpin marmot	MODERN SPECIES	24	LDLR (ENSMMMG00000019891)	SMARCA4 (ENSMMMG00000019826) #7	ENSMMMG00000019820 #9	YIPF2 (ENSMMMG00000019805) #10	CARM1 (ENSMMMG00000019799) #11	C19orf38 (ENSMMMG00000019779) #12	TMED1 (ENSMMMG00000019775) #13	DNM2 (ENSMMMG00000019573) #14	QTRT1 (ENSMMMG00000019561) #15	ILF3 (ENSMMMG00000019155) #16	SLC44A2 (ENSMMMG00000019127) #17	AP1M2 (ENSMMMG00000019106) #18	ENSMMMG00000019102	KRI1 (ENSMMMG00000019036) #20	ATG4D (ENSMMMG00000018985) #21	ENSMMMG00000018981 #22	KEAP1 (ENSMMMG00000018969) #23	PDE4A (ENSMMMG00000017967) #24	CDC37 (ENSMMMG00000017941) #25	TYK2 (ENSMMMG00000017895) #26	ICAM3 (ENSMMMG00000017891) #27	RAVER1 (ENSMMMG00000017883) #28	FDX2 (ENSMMMG00000017878) #29	ENSMMMG00000017874 #30	ICAM5 (ENSMMMG00000017859) #31	ICAM4 (ENSMMMG00000017853) #32	ICAM1 (ENSMMMG00000017017) #33	MRPL4 (ENSMMMG00000017010) #34	S1PR2 (ENSMMMG00000017008) #35	DNMT1 (ENSMMMG00000015887) #36	ENSMMMG00000015867
Marmotini_b	ANCESTRAL SPECIES	40	ENSGT00940000161046	ENSGT00940000156887 #7	ENSGT00390000018541 #9	ENSGT00390000010157.b #10	ENSGT00940000160377 #11	ENSGT00390000008862 #12	ENSGT00940000158445 #13	ENSGT00940000155764.C #14	ENSGT00530000063679.B #15	ENSGT00940000156719 #16	ENSGT00940000158178 #17	ENSGT00940000159089 #18	ENSGT00940000159801.B #19	ENSGT00390000005605 #20	ENSGT00530000063000.a.a.b #21	ENSGT01050000244887.A.a.a.a #22	ENSGT00940000159543 #23	ENSGT00940000159788.b #24	ENSGT00390000013443.c #25	ENSGT00940000159869 #26	ENSGT00940000159005 #27	ENSGT00940000160550 #28	ENSGT00940000161143.b #29	ENSGT00470000042444 #30	ENSGT00940000162184 #31	ENSGT00940000162431 #32	ENSGT00940000162311 #33	ENSGT00390000014512 #34	ENSGT01050000244887.A.a.a.b #35	ENSGT00390000005100 #36	ENSGT00510000047802
Arctic ground squirrel	MODERN SPECIES	217	LDLR (ENSUPAG00010003299)	SMARCA4 (ENSUPAG00010003222) #7	TIMM29 (ENSUPAG00010003216) #9	YIPF2 (ENSUPAG00010003190) #10	CARM1 (ENSUPAG00010003160) #11	C19orf38 (ENSUPAG00010003139) #12	TMED1 (ENSUPAG00010003125) #13	DNM2 (ENSUPAG00010002497) #14	QTRT1 (ENSUPAG00010002480) #15	ILF3 (ENSUPAG00010002202) #16	SLC44A2 (ENSUPAG00010002115) #17	AP1M2 (ENSUPAG00010002081) #18	CDKN2D (ENSUPAG00010002067) #19	KRI1 (ENSUPAG00010002031) #20	ATG4D (ENSUPAG00010002014) #21	ENSUPAG00010002004 #22	KEAP1 (ENSUPAG00010001991) #23	PDE4A (ENSUPAG00010001873) #24	CDC37 (ENSUPAG00010001857) #25	TYK2 (ENSUPAG00010001822) #26	ICAM3 (ENSUPAG00010001065) #27	RAVER1 (ENSUPAG00010001012) #28	FDX2 (ENSUPAG00010001004) #29	ZGLP1 (ENSUPAG00010000992) #30	ICAM5 (ENSUPAG00010000960) #31	ICAM4 (ENSUPAG00010000954) #32	ICAM1 (ENSUPAG00010000950) #33	MRPL4 (ENSUPAG00010000934) #34	S1PR2 (ENSUPAG00010000933) #35	DNMT1 (ENSUPAG00010000182) #36	EIF3G (ENSUPAG00010000146)
Squirrel	MODERN SPECIES	259	LDLR (ENSSTOG00000007999)	SMARCA4 (ENSSTOG00000007939) #7	TIMM29 (ENSSTOG00000026705) #9	YIPF2 (ENSSTOG00000007905) #10	CARM1 (ENSSTOG00000007864) #11	C19orf38 (ENSSTOG00000024893) #12	TMED1 (ENSSTOG00000023250) #13	DNM2 (ENSSTOG00000007826) #14	QTRT1 (ENSSTOG00000020466) #15	ILF3 (ENSSTOG00000007786) #16	SLC44A2 (ENSSTOG00000007737) #17	AP1M2 (ENSSTOG00000007719) #18	ENSSTOG00000023338 #19	KRI1 (ENSSTOG00000007660) #20	ATG4D (ENSSTOG00000023750) #21	S1PR5 (ENSSTOG00000024850) #22	KEAP1 (ENSSTOG00000010114) #23	PDE4A (ENSSTOG00000027947) #24	CDC37 (ENSSTOG00000015962) #25	TYK2 (ENSSTOG00000003264) #26	RAVER1 (ENSSTOG00000003241) #28	FDX2 (ENSSTOG00000008207) #29	ZGLP1 (ENSSTOG00000021194) #30	ICAM5 (ENSSTOG00000008181) #31	ICAM4 (ENSSTOG00000019729) #32	ICAM1 (ENSSTOG00000031629) #33	MRPL4 (ENSSTOG00000030121) #34	S1PR2 (ENSSTOG00000022687) #35	DNMT1 (ENSSTOG00000010841) #36	EIF3G (ENSSTOG00000027655)	P2RY11 (ENSSTOG00000010839)
Atlantogenata	ANCESTRAL SPECIES	41	ENSGT00940000161046	ENSGT00940000156887 #7	ENSGT00390000018541 #9	ENSGT00390000010157.b #10	ENSGT00940000160377 #11	ENSGT00390000008862 #12	ENSGT00940000158445 #13	ENSGT00940000155764.C #14	ENSGT00530000063679.B #15	ENSGT00940000156719 #16	ENSGT00940000158178 #17	ENSGT00940000159089 #18	ENSGT00940000159801.B #19	ENSGT00390000005605 #20	ENSGT00530000063000.a.a.b #21	ENSGT01050000244887.A.a.a.a #22	ENSGT00940000159543 #23	ENSGT00940000159788.b #24	ENSGT00390000013443.c #25	ENSGT00940000159869 #26	ENSGT00940000159005 #27	ENSGT00940000160550 #28	ENSGT00940000161143 #29	ENSGT00470000042444 #30	ENSGT00940000162184 #31	ENSGT00940000162431 #32	ENSGT00940000162311 #33	ENSGT00390000014512 #34	ENSGT01050000244887.A.a.a.b #35	ENSGT00390000005100 #36	ENSGT00510000047802
Afrotheria	ANCESTRAL SPECIES	38	ENSGT00940000161046	ENSGT00940000156887 #7	ENSGT00390000018541 #9	ENSGT00390000010157.b #10	ENSGT00940000160377 #11	ENSGT00390000008862 #12	ENSGT00940000158445 #13	ENSGT00940000155764.C #14	ENSGT00530000063679.B #15	ENSGT00940000156719 #16	ENSGT00940000158178 #17	ENSGT00940000159089 #18	ENSGT00940000159801.B #19	ENSGT00390000005605 #20	ENSGT00530000063000.a.a.b #21	ENSGT01050000244887.A.a.a.a #22	ENSGT00940000159543 #23	ENSGT00940000159788.b #24	ENSGT00390000013443.c #25	ENSGT00940000159869 #26	ENSGT00940000159005 #27	ENSGT00940000160550 #28	ENSGT00940000161143 #29	ENSGT00470000042444 #30	ENSGT00940000162184 #31	ENSGT00940000162431 #32	ENSGT00940000162311 #33	ENSGT00390000014512 #34	ENSGT01050000244887.A.a.a.b #35	ENSGT00390000005100 #36	ENSGT00510000047802
Afrotheria_a	ANCESTRAL SPECIES	39	ENSGT00940000161046	ENSGT00940000156887 #7	ENSGT00390000018541 #9	ENSGT00390000010157.b #10	ENSGT00940000160377 #11	ENSGT00390000008862 #12	ENSGT00940000158445 #13	ENSGT00940000155764.C #14	ENSGT00530000063679.B #15	ENSGT00940000156719 #16	ENSGT00940000158178 #17	ENSGT00940000159089 #18	ENSGT00940000159801.B #19	ENSGT00390000005605 #20	ENSGT00530000063000.a.a.b #21	ENSGT01050000244887.A.a.a.a #22	ENSGT00940000159543 #23	ENSGT00940000159788.b #24	ENSGT00390000013443.c #25	ENSGT00940000159869 #26	ENSGT00940000159005 #27	ENSGT00940000160550 #28	ENSGT00940000161143 #29	ENSGT00470000042444 #30	ENSGT00940000162184 #31	ENSGT00940000162431 #32	ENSGT00940000162311 #33	ENSGT00390000014512 #34	ENSGT01050000244887.A.a.a.b #35	ENSGT00390000005100 #36	ENSGT00510000047802
Elephant	MODERN SPECIES	270	LDLR (ENSLAFG00000000360)	SMARCA4 (ENSLAFG00000001433) #7	TIMM29 (ENSLAFG00000022030) #9	YIPF2 (ENSLAFG00000004436) #10	CARM1 (ENSLAFG00000004431) #11	C19orf38 (ENSLAFG00000030795) #12	TMED1 (ENSLAFG00000026891) #13	DNM2 (ENSLAFG00000003417) #14	QTRT1 (ENSLAFG00000020858) #15	ILF3 (ENSLAFG00000021667) #16	SLC44A2 (ENSLAFG00000016829) #17	AP1M2 (ENSLAFG00000001589) #18	CDKN2D (ENSLAFG00000032625) #19	KRI1 (ENSLAFG00000021854) #20	ATG4D (ENSLAFG00000011701) #21	S1PR5 (ENSLAFG00000030547) #22	KEAP1 (ENSLAFG00000017907) #23	ENSLAFG00000032058 #24	CDC37 (ENSLAFG00000026818) #25	TYK2 (ENSLAFG00000003922) #26	RAVER1 (ENSLAFG00000003664) #28	FDX2 (ENSLAFG00000022295) #29	ZGLP1 (ENSLAFG00000029015) #30	ICAM5 (ENSLAFG00000026578) #31	ENSLAFG00000013278 #32	MRPL4 (ENSLAFG00000015366) #34	S1PR2 (ENSLAFG00000028576) #35	DNMT1 (ENSLAFG00000002818) #36	EIF3G (ENSLAFG00000006469)	P2RY11 (ENSLAFG00000031035)	PPAN (ENSLAFG00000016399)
Hyrax	MODERN SPECIES	606												AP1M2 (ENSPCAG00000014461) #18	CDKN2D (ENSPCAG00000014414) #19	KRI1 (ENSPCAG00000014272) #20	ATG4D (ENSPCAG00000014194) #21	S1PR5 (ENSPCAG00000014178) #22	KEAP1 (ENSPCAG00000014140) #23	PDE4A (ENSPCAG00000014052) #24	CDC37 (ENSPCAG00000014005) #25
Xenarthra	ANCESTRAL SPECIES	1074													ENSGT00940000159089 #18	ENSGT00390000005605 #20	ENSGT00530000063000.a.a.b #21	ENSGT01050000244887.A.a.a.a #22	ENSGT00940000159543 #23
Armadillo	MODERN SPECIES	2332											ENSDNOG00000031887	ENSDNOG00000046550	AP1M2 (ENSDNOG00000032725) #18	KRI1 (ENSDNOG00000034329) #20	ATG4D (ENSDNOG00000049329) #21	S1PR5 (ENSDNOG00000045015) #22	KEAP1 (ENSDNOG00000031031) #23
Marsupialia	ANCESTRAL SPECIES	1	ENSGT00390000018541 #9	ENSGT00390000010157.b #10	ENSGT00940000160377 #11	ENSGT00390000008862 #12	ENSGT00940000158445 #13	ENSGT00940000155764.C #14	ENSGT00530000063679.B #15	ENSGT00940000163421.j.b	ENSGT00940000163421.j.a.a	ENSGT00940000156719 #16	ENSGT00940000158178 #17	ENSGT00940000159089 #18	ENSGT00940000159801.B #19	ENSGT00390000005605 #20	ENSGT00530000063000.a.a.b #21	ENSGT01050000244887.A.a.a.a #22	ENSGT00940000159543 #23	ENSGT00940000159788.b #24	ENSGT00390000013443.c #25	ENSGT00940000159869 #26	ENSGT00940000159005.i #27	ENSGT00940000160550 #28	ENSGT00940000161143 #29	ENSGT00470000042444 #30	ENSGT00940000162184 #31	ENSGT00940000162431 #32	ENSGT00940000159005.j #27	ENSGT00390000014512 #34	ENSGT01050000244887.A.a.a.b #35	ENSGT00390000005100.r.a #36	ENSGT00390000005100.r.b #36
Opossum	MODERN SPECIES	2	YIPF2 (ENSMODG00000025629) #10	CARM1 (ENSMODG00000006104) #11	C19orf38 (ENSMODG00000006091) #12	TMED1 (ENSMODG00000044610) #13	DNM2 (ENSMODG00000006064) #14	QTRT1 (ENSMODG00000005954) #15	ENSMODG00000029059	ENSMODG00000028035	ENSMODG00000005923	ILF3 (ENSMODG00000005911) #16	SLC44A2 (ENSMODG00000005859) #17	AP1M2 (ENSMODG00000005838) #18	CDKN2D (ENSMODG00000005828) #19	KRI1 (ENSMODG00000005816) #20	ATG4D (ENSMODG00000005790) #21	S1PR5 (ENSMODG00000005761) #22	KEAP1 (ENSMODG00000005745) #23	ENSMODG00000005727 #24	ENSMODG00000045262 #24	CDC37 (ENSMODG00000005701) #25	TYK2 (ENSMODG00000005684) #26	ENSMODG00000049607 #27	RAVER1 (ENSMODG00000005584) #28	ENSMODG00000005546 #29	ICAM5 (ENSMODG00000040312) #31	ENSMODG00000028933 #27	MRPL4 (ENSMODG00000005476) #34	S1PR2 (ENSMODG00000028318) #35	DNMT1 (ENSMODG00000048820) #36	ENSMODG00000005463 #36	EIF3G (ENSMODG00000005173)
Marsupialia_b	ANCESTRAL SPECIES	2	ENSGT00940000160377 #11	ENSGT00390000008862 #12	ENSGT00940000158445 #13	ENSGT00940000155764.C #14	ENSGT00530000063679.B #15	ENSGT00940000163421.j.b	ENSGT00940000163421.j.a.b	ENSGT00940000163421.j.a.a	ENSGT00940000163421.i	ENSGT00940000156719 #16	ENSGT00940000158178 #17	ENSGT00940000159089 #18	ENSGT00940000159801.B #19	ENSGT00390000005605 #20	ENSGT00530000063000.a.a.b #21	ENSGT01050000244887.A.a.a.a #22	ENSGT00940000159543 #23	ENSGT00940000159788.b #24	ENSGT00390000013443.c #25	ENSGT00940000159869 #26	ENSGT00940000159005.i #27	ENSGT00940000160550 #28	ENSGT00940000161143 #29	ENSGT00470000042444 #30	ENSGT00940000162184 #31	ENSGT00940000162431 #32	ENSGT00940000159005.j #27	ENSGT00390000014512 #34	ENSGT01050000244887.A.a.a.b #35	ENSGT00390000005100.r.a #36	ENSGT00390000005100.r.b #36
Diprotodontia	ANCESTRAL SPECIES	20	ENSGT00940000160377 #11	ENSGT00390000008862 #12	ENSGT00940000158445 #13	ENSGT00940000155764.C #14	ENSGT00530000063679.B #15	ENSGT00940000163421.j.b	ENSGT00940000163421.j.a.b	ENSGT00940000163421.j.a.a	ENSGT00940000163421.i	ENSGT00940000156719 #16	ENSGT00940000158178 #17	ENSGT00940000159089 #18	ENSGT00940000159801.B #19	ENSGT00390000005605 #20	ENSGT00530000063000.a.a.b #21	ENSGT01050000244887.A.a.a.a #22	ENSGT00940000159543 #23	ENSGT00940000159788.b #24	ENSGT00390000013443.c #25	ENSGT00940000159869 #26	ENSGT00940000160550 #28	ENSGT00940000161143 #29	ENSGT00470000042444 #30	ENSGT00940000162184 #31	ENSGT00940000162431 #32	ENSGT00940000159005.j #27	ENSGT00390000014512 #34	ENSGT01050000244887.A.a.a.b #35	ENSGT00390000005100.r.a #36	ENSGT00390000005100.r.b #36	ENSGT00390000005100.q #36
Diprotodontia_a	ANCESTRAL SPECIES	16	ENSGT00940000160377.o #11	ENSGT00390000008862 #12	ENSGT00940000158445 #13	ENSGT00940000155764.C #14	ENSGT00530000063679.B #15	ENSGT00940000163421.j.b	ENSGT00940000163421.j.a.b	ENSGT00940000163421.j.a.a	ENSGT00940000163421.i	ENSGT00940000156719 #16	ENSGT00940000158178 #17	ENSGT00940000159089 #18	ENSGT00940000159801.B #19	ENSGT00390000005605 #20	ENSGT00530000063000.a.a.b #21	ENSGT01050000244887.A.a.a.a #22	ENSGT00940000159543 #23	ENSGT00940000159788.b #24	ENSGT00390000013443.c #25	ENSGT00940000159869 #26	ENSGT00940000160550 #28	ENSGT00940000161143 #29	ENSGT00470000042444 #30	ENSGT00940000162184 #31	ENSGT00940000162431 #32	ENSGT00940000159005.j #27	ENSGT00390000014512 #34	ENSGT01050000244887.A.a.a.b #35	ENSGT00390000005100.r.a #36	ENSGT00390000005100.r.b #36	ENSGT00390000005100.q #36
Common wonbat	DUPLICATION
Common wonbat	MODERN SPECIES	798																ENSVURG00010011792 #22	ENSVURG00010011803 #23
Common wonbat	MODERN SPECIES	797																ENSVURG00010011779 #22	ENSVURG00010011781 #23
koala	MODERN SPECIES	58	DNM2 (ENSPCIG00000017114) #14	ENSPCIG00000035002 #14	QTRT1 (ENSPCIG00000017110) #15	ENSPCIG00000017107	ENSPCIG00000017106	ENSPCIG00000034604	ENSPCIG00000032816	ENSPCIG00000015441	ENSPCIG00000033447	ILF3 (ENSPCIG00000015447) #16	SLC44A2 (ENSPCIG00000015531) #17	AP1M2 (ENSPCIG00000016957) #18	CDKN2D (ENSPCIG00000035848) #19	KRI1 (ENSPCIG00000018661) #20	ATG4D (ENSPCIG00000018664) #21	S1PR5 (ENSPCIG00000018666) #22	KEAP1 (ENSPCIG00000018668) #23	PDE4A (ENSPCIG00000018672) #24	CDC37 (ENSPCIG00000018680) #25	TYK2 (ENSPCIG00000018684) #26	ENSPCIG00000018689	RAVER1 (ENSPCIG00000018695) #28	ENSPCIG00000034101 #30	ICAM5 (ENSPCIG00000018766) #31	ENSPCIG00000036585 #32	ENSPCIG00000018769 #27	MRPL4 (ENSPCIG00000033688) #34	S1PR2 (ENSPCIG00000018778) #35	ENSPCIG00000018780 #36	ENSPCIG00000018782 #36	ENSPCIG00000033373 #36
Tasmanian devil	MODERN SPECIES		ENSSHAG00000026938 #15	ENSSHAG00000030449	ENSSHAG00000020483	ENSSHAG00000001700	ENSSHAG00000000578	ENSSHAG00000001997	ENSSHAG00000031461	ENSSHAG00000024820	ENSSHAG00000001788	ENSSHAG00000001712 #16	SLC44A2 (ENSSHAG00000004341) #17	AP1M2 (ENSSHAG00000005131) #18	CDKN2D (ENSSHAG00000005312) #19	KRI1 (ENSSHAG00000005378) #20	ATG4D (ENSSHAG00000005520) #21	S1PR5 (ENSSHAG00000006242) #22	KEAP1 (ENSSHAG00000024185) #23	PDE4A (ENSSHAG00000006562) #24	CDC37 (ENSSHAG00000022863) #25	TYK2 (ENSSHAG00000007617) #26	ENSSHAG00000008104 #27	RAVER1 (ENSSHAG00000008181) #28	ENSSHAG00000028563 #30	ENSSHAG00000025294 #32	ICAM5 (ENSSHAG00000032328) #31	MRPL4 (ENSSHAG00000008539) #34	S1PR2 (ENSSHAG00000028683) #35	ENSSHAG00000008894 #36	ENSSHAG00000027218 #36	ENSSHAG00000024917 #36	EIF3G (ENSSHAG00000009231)
Platypus	MODERN SPECIES	85	ENSOANG00000013709	ENSOANG00000013710	HDGFL2 (ENSOANG00000040438)	UBXN6 (ENSOANG00000002985)	CHAF1A (ENSOANG00000030964)	ENSOANG00000046062	SH3GL1 (ENSOANG00000012873)	MPND (ENSOANG00000038751)	QTRT1 (ENSOANG00000044363) #15	ENSOANG00000042646 #16	SLC44A2 (ENSOANG00000050628) #17	AP1M2 (ENSOANG00000010455) #18	CDKN2D (ENSOANG00000010456) #19	KRI1 (ENSOANG00000039875) #20	ATG4D (ENSOANG00000009372) #21	S1PR5 (ENSOANG00000049448) #22	KEAP1 (ENSOANG00000009371) #23	ENSOANG00000043439 #24	CDC37 (ENSOANG00000013393) #25	TYK2 (ENSOANG00000037034) #26	RAVER1 (ENSOANG00000039656) #28	FDX2 (ENSOANG00000022666) #29	ENSOANG00000031406 #27	ENSOANG00000013892 #27	MRPL4 (ENSOANG00000045427) #34	S1PR2 (ENSOANG00000037970) #35	DNMT1 (ENSOANG00000012255) #36	EIF3G (ENSOANG00000028960)	PPAN (ENSOANG00000006740)	ANGPTL6 (ENSOANG00000022103)	RDH8 (ENSOANG00000041813)
Sauria	ANCESTRAL SPECIES	22	ENSGT00390000018541 #9	ENSGT00390000010157.b #10	ENSGT00940000160377 #11	ENSGT00940000158445 #13	ENSGT00940000155764.C #14	ENSGT00530000063679.B #15	ENSGT00940000166551	ENSGT00940000163421	ENSGT00940000156719 #16	ENSGT00940000158178 #17	ENSGT00940000159089 #18	ENSGT00940000159801.B #19	ENSGT00390000005605 #20	ENSGT00950000182923.A	ENSGT00530000063000.a.a.b #21	ENSGT01050000244887.A.a.a.a #22	ENSGT00940000159543 #23	ENSGT00390000005584	ENSGT00940000159788.b #24	ENSGT00390000013443.c #25	ENSGT00940000159869 #26	ENSGT00940000160550 #28	ENSGT00940000161143 #29	ENSGT00470000042444 #30	ENSGT00940000159005 #27	ENSGT00390000014512 #34	ENSGT01050000244887.A.a.a.b #35	ENSGT00940000172524	ENSGT00390000005100 #36	ENSGT00940000154535.B	ENSGT00940000159148
Lepidosauria	ANCESTRAL SPECIES	44	ENSGT00390000018541 #9	ENSGT00390000010157.b #10	ENSGT00940000160377 #11	ENSGT00940000158445 #13	ENSGT00940000155764.C #14	ENSGT00530000063679.B #15	ENSGT00940000166551	ENSGT00940000163421	ENSGT00940000156719 #16	ENSGT00940000158178 #17	ENSGT00940000159089 #18	ENSGT00940000159801.B #19	ENSGT00390000005605 #20	ENSGT00950000182923.A	ENSGT00530000063000.a.a.b #21	ENSGT01050000244887.A.a.a.a #22	ENSGT00940000159543 #23	ENSGT00390000005584	ENSGT00940000159788.b #24	ENSGT00390000013443.c #25	ENSGT00940000159869 #26	ENSGT00940000160550 #28	ENSGT00940000161143 #29	ENSGT00470000042444 #30	ENSGT00940000159005 #27	ENSGT00390000014512 #34	ENSGT01050000244887.A.a.a.b #35	ENSGT00390000005100 #36	ENSGT00510000047802	ENSGT01030000234518.C.a.a	ENSGT00530000064158
Episquamata	ANCESTRAL SPECIES	6	ENSGT00670000098076	ENSGT00390000018541 #9	ENSGT00390000010157.b #10	ENSGT00940000160377 #11	ENSGT00940000158445 #13	ENSGT00940000155764.C #14	ENSGT00530000063679.B #15	ENSGT00940000163421	ENSGT00940000156719 #16	ENSGT00940000158178 #17	ENSGT00940000159089 #18	ENSGT00940000159801.B #19	ENSGT00390000005605 #20	ENSGT00950000182923.A	ENSGT00530000063000.a.a.b #21	ENSGT01050000244887.A.a.a.a #22	ENSGT00940000158035	ENSGT01030000234635.a.a.a.b	ENSGT01030000234575.c.b	ENSGT00940000159130	ENSGT00950000183036.b	ENSGT00940000161507	ENSGT00940000158718	ENSGT00940000161423	ENSGT00940000161046	ENSGT00940000161012	ENSGT00940000159313	ENSGT00940000164506	ENSGT00940000157552	ENSGT00390000016298.a	ENSGT00390000008201
Laterata	ANCESTRAL SPECIES	7	ENSGT00670000098076	ENSGT00390000018541 #9	ENSGT00390000010157.b #10	ENSGT00940000160377 #11	ENSGT00940000158445 #13	ENSGT00940000155764.C #14	ENSGT00530000063679.B #15	ENSGT00940000163421	ENSGT00940000156719 #16	ENSGT00940000158178 #17	ENSGT00940000159089 #18	ENSGT00940000159801.B #19	ENSGT00390000005605 #20	ENSGT00950000182923.A	ENSGT00530000063000.a.a.b #21	ENSGT01050000244887.A.a.a.a #22	ENSGT00940000158035	ENSGT01030000234635.a.a.a.b	ENSGT01030000234575.c.b	ENSGT00940000159130	ENSGT00950000183036.b.c	ENSGT00940000161507	ENSGT00940000158718	ENSGT00940000161423	ENSGT00940000161046	ENSGT00940000161012	ENSGT00940000159313	ENSGT00940000164506	ENSGT00940000157552	ENSGT00940000158145	ENSGT00390000007170
Common wall lizard	DUPLICATION
Common wall lizard	MODERN SPECIES	8	TMED1 (ENSPMRG00000022360) #13	DNM2 (ENSPMRG00000022363) #14	QTRT1 (ENSPMRG00000022375) #15	ENSPMRG00000022383	ENSPMRG00000022385	ENSPMRG00000022392	ENSPMRG00000022395	ILF3 (ENSPMRG00000022429) #16	SLC44A2 (ENSPMRG00000017149) #17	AP1M2 (ENSPMRG00000017933) #18	CDKN2D (ENSPMRG00000017968) #19	KRI1 (ENSPMRG00000017975) #20	GAL3ST3 (ENSPMRG00000017991)	ATG4D (ENSPMRG00000018001) #21	ENSPMRG00000018037 #22	ENSPMRG00000018045 #22	ENSPMRG00000018058	ILVBL (ENSPMRG00000018146)	SYDE1 (ENSPMRG00000018494)	PNPLA6 (ENSPMRG00000019012)	MCOLN1 (ENSPMRG00000022249)	CYP4F22 (ENSPMRG00000022362)	ENSPMRG00000022591	PGLYRP2 (ENSPMRG00000022596)	RASAL3 (ENSPMRG00000022609)	ENSPMRG00000022644	LDLR (ENSPMRG00000022649)	KANK2 (ENSPMRG00000022667)	DOCK6 (ENSPMRG00000023028)	ENSPMRG00000023582	RAB3D (ENSPMRG00000023586)
Common wall lizard	MODERN SPECIES	8	CARM1 (ENSPMRG00000022349) #11	TMED1 (ENSPMRG00000022360) #13	DNM2 (ENSPMRG00000022363) #14	QTRT1 (ENSPMRG00000022375) #15	ENSPMRG00000022383	ENSPMRG00000022385	ENSPMRG00000022392	ENSPMRG00000022395	ILF3 (ENSPMRG00000022429) #16	SLC44A2 (ENSPMRG00000017149) #17	AP1M2 (ENSPMRG00000017933) #18	CDKN2D (ENSPMRG00000017968) #19	KRI1 (ENSPMRG00000017975) #20	GAL3ST3 (ENSPMRG00000017991)	ATG4D (ENSPMRG00000018001) #21	ENSPMRG00000018037 #22	ENSPMRG00000018045 #22	ENSPMRG00000018058	ILVBL (ENSPMRG00000018146)	SYDE1 (ENSPMRG00000018494)	PNPLA6 (ENSPMRG00000019012)	MCOLN1 (ENSPMRG00000022249)	CYP4F22 (ENSPMRG00000022362)	ENSPMRG00000022591	PGLYRP2 (ENSPMRG00000022596)	RASAL3 (ENSPMRG00000022609)	ENSPMRG00000022644	LDLR (ENSPMRG00000022649)	KANK2 (ENSPMRG00000022667)	DOCK6 (ENSPMRG00000023028)	ENSPMRG00000023582
Argentine black and white tegu	MODERN SPECIES	45	TIMM29 (ENSSMRG00000004611) #9	YIPF2 (ENSSMRG00000004613) #10	CARM1 (ENSSMRG00000004619) #11	TMED1 (ENSSMRG00000004629) #13	DNM2 (ENSSMRG00000004636) #14	QTRT1 (ENSSMRG00000004655) #15	ENSSMRG00000004662	ENSSMRG00000004663	ILF3 (ENSSMRG00000004665) #16	SLC44A2 (ENSSMRG00000004687) #17	AP1M2 (ENSSMRG00000004709) #18	CDKN2D (ENSSMRG00000004717) #19	KRI1 (ENSSMRG00000004719) #20	ENSSMRG00000004733	ATG4D (ENSSMRG00000004737) #21	S1PR5 (ENSSMRG00000004740) #22	ILVBL (ENSSMRG00000004757)	SYDE1 (ENSSMRG00000004759)	ENSSMRG00000004761	PNPLA6 (ENSSMRG00000004764)	ENSSMRG00000004785	ENSSMRG00000004792	PLA1A (ENSSMRG00000004830)	POPDC2 (ENSSMRG00000004843)	CFAP91 (ENSSMRG00000004857)	GSK3B (ENSSMRG00000004891)	ENSSMRG00000004908	LRRC58 (ENSSMRG00000004920)	FSTL1 (ENSSMRG00000004922)	NDUFB4 (ENSSMRG00000004928)	HGD (ENSSMRG00000004933)
Toxicofera	ANCESTRAL SPECIES	6	ENSGT00670000098076	ENSGT00390000018541 #9	ENSGT00390000010157.b #10	ENSGT00940000160377 #11	ENSGT00940000158445 #13	ENSGT00940000155764.C #14	ENSGT00530000063679.B #15	ENSGT00940000163421	ENSGT00940000156719 #16	ENSGT00940000158178 #17	ENSGT00940000159089.u #18	ENSGT00940000159801.B #19	ENSGT00390000005605 #20	ENSGT00950000182923.A	ENSGT00530000063000.a.a.b #21	ENSGT01050000244887.A.a.a.a #22	ENSGT00940000158035	ENSGT01030000234635.a.a.a.b	ENSGT01030000234575.c.b	ENSGT00940000159130	ENSGT00950000183036.b	ENSGT00940000161507	ENSGT00940000158718	ENSGT00940000161423	ENSGT00940000161046	ENSGT00940000161012	ENSGT00940000159313	ENSGT00940000157552	ENSGT00390000016298.a	ENSGT00390000008201	ENSGT00940000158145
Lizard	MODERN SPECIES	1	ENSACAG00000015317	TIMM29 (ENSACAG00000041442) #9	YIPF2 (ENSACAG00000015324) #10	CARM1 (ENSACAG00000015347) #11	TMED1 (ENSACAG00000015386) #13	DNM2 (ENSACAG00000015436) #14	ENSACAG00000015590 #15	ENSACAG00000015630	ILF3 (ENSACAG00000015632) #16	SLC44A2 (ENSACAG00000015726) #17	AP1M2 (ENSACAG00000015870) #18	CDKN2D (ENSACAG00000015955) #19	KRI1 (ENSACAG00000015966) #20	ENSACAG00000026255	ATG4D (ENSACAG00000015993) #21	S1PR5 (ENSACAG00000016058) #22	ENSACAG00000016064	ENSACAG00000016096	ENSACAG00000016113	ENSACAG00000016134	ENSACAG00000016313	ENSACAG00000039153	ENSACAG00000043906	ENSACAG00000016354	ENSACAG00000041676	ENSACAG00000016557	RASAL3 (ENSACAG00000016567)	LDLR (ENSACAG00000016589)	ENSACAG00000042311	KANK2 (ENSACAG00000016624)	ENSACAG00000036635
tuatara	MODERN SPECIES	1327					ENSSPUG00000002943	CDCA5 (ENSSPUG00000002930)	ENSSPUG00000002898	SNX15 (ENSSPUG00000002865)	ARL2 (ENSSPUG00000002850)	ENSSPUG00000002569	SLC44A2 (ENSSPUG00000002524) #17	CDKN2D (ENSSPUG00000002515) #19	ENSSPUG00000002511 #18	KRI1 (ENSSPUG00000002483) #20	ATG4D (ENSSPUG00000002362) #21	S1PR5 (ENSSPUG00000002333) #22	KEAP1 (ENSSPUG00000002322) #23	ENSSPUG00000002307	PDE4A (ENSSPUG00000002280) #24	CDC37 (ENSSPUG00000002268) #25	ENSSPUG00000002258 #26	FDX2 (ENSSPUG00000002158) #29	ENSSPUG00000002138 #27	ENSSPUG00000002134 #27
Archelosauria	ANCESTRAL SPECIES	40	ENSGT00390000018541 #9	ENSGT00390000010157.b #10	ENSGT00940000160377 #11	ENSGT00940000158445 #13	ENSGT00940000155764.C #14	ENSGT00530000063679.B #15	ENSGT00940000166551	ENSGT00940000163421	ENSGT00940000156719 #16	ENSGT00940000158178 #17	ENSGT00940000159089 #18	ENSGT00940000159801.B #19	ENSGT00390000005605 #20	ENSGT00950000182923.A	ENSGT00530000063000.a.a.b #21	ENSGT01050000244887.A.a.a.a #22	ENSGT00940000159543 #23	ENSGT00390000005584	ENSGT00940000159788.b #24	ENSGT00390000013443.c #25	ENSGT00940000159869 #26	ENSGT00940000160550 #28	ENSGT00940000161143 #29	ENSGT00470000042444 #30	ENSGT00940000159005 #27	ENSGT00390000014512 #34	ENSGT01050000244887.A.a.a.b #35	ENSGT00940000172524	ENSGT00390000005100 #36	ENSGT00940000155412.b	ENSGT00940000154535.C
Cryptodira	ANCESTRAL SPECIES	45	ENSGT00940000156887 #7	ENSGT00390000018541 #9	ENSGT00390000010157.b #10	ENSGT00940000160377 #11	ENSGT00940000158445 #13	ENSGT00940000155764.C #14	ENSGT00530000063679.B #15	ENSGT00940000166551	ENSGT00940000163421	ENSGT00940000156719 #16	ENSGT00940000158178 #17	ENSGT00940000159089 #18	ENSGT00940000159801.B #19	ENSGT00390000005605 #20	ENSGT00530000063000.a.a.b #21	ENSGT01050000244887.A.a.a.a #22	ENSGT00940000159543 #23	ENSGT00390000005584	ENSGT00940000159788.b #24	ENSGT00390000013443.c #25	ENSGT00940000159869 #26	ENSGT00940000160550 #28	ENSGT00940000161143 #29	ENSGT00470000042444 #30	ENSGT00940000159005 #27	ENSGT00390000014512 #34	ENSGT01050000244887.A.a.a.b #35	ENSGT00940000172524	ENSGT00390000005100 #36	ENSGT00510000047802	ENSGT00940000162394
Testudinoidea	ANCESTRAL SPECIES	38	ENSGT00940000156887 #7	ENSGT00390000018541 #9	ENSGT00390000010157.b #10	ENSGT00940000160377 #11	ENSGT00940000158445 #13	ENSGT00940000155764.C #14	ENSGT00530000063679.B #15	ENSGT00940000166551	ENSGT00940000163421	ENSGT00940000156719 #16	ENSGT00940000158178.f #17	ENSGT00940000159089 #18	ENSGT00940000159801.B #19	ENSGT00390000005605 #20	ENSGT00530000063000.a.a.b #21	ENSGT01050000244887.A.a.a.a #22	ENSGT00940000159543 #23	ENSGT00390000005584	ENSGT00940000159788.b #24	ENSGT00390000013443.c #25	ENSGT00940000159869 #26	ENSGT00940000160550 #28	ENSGT00940000161143 #29	ENSGT00470000042444 #30	ENSGT00940000159005.s.a.b #27	ENSGT00940000159005.s.b.b #27	ENSGT00390000014512 #34	ENSGT01050000244887.A.a.a.b #35	ENSGT00940000172524	ENSGT00390000005100 #36	ENSGT00510000047802
Testudinidae	ANCESTRAL SPECIES	59	ENSGT00940000156887 #7	ENSGT00390000018541 #9	ENSGT00390000010157.b #10	ENSGT00940000160377 #11	ENSGT00940000158445 #13	ENSGT00940000155764.C #14	ENSGT00530000063679.B #15	ENSGT00940000166551	ENSGT00940000163421	ENSGT00940000156719 #16	ENSGT00940000158178.f #17	ENSGT00940000159089 #18	ENSGT00940000159801.B #19	ENSGT00390000005605 #20	ENSGT00530000063000.a.a.b #21	ENSGT01050000244887.A.a.a.a #22	ENSGT00940000159543 #23	ENSGT00390000005584	ENSGT00940000159788.b #24	ENSGT00390000013443.c #25	ENSGT00940000159869 #26	ENSGT00940000160550 #28	ENSGT00940000161143 #29	ENSGT00940000159005.s.a.b #27	ENSGT00940000159005.s.b.b #27	ENSGT00390000014512 #34	ENSGT01050000244887.A.a.a.b #35	ENSGT00390000005100 #36	ENSGT00510000047802	ENSGT00390000005065	ENSGT00940000164135
Abingdon island giant tortoise	MODERN SPECIES	727	TIMM29 (ENSCABG00000004350) #9	YIPF2 (ENSCABG00000004351) #10	CARM1 (ENSCABG00000004353) #11	TMED1 (ENSCABG00000004354) #13	DNM2 (ENSCABG00000004356) #14	QTRT1 (ENSCABG00000004363) #15	ENSCABG00000004371	ENSCABG00000004386	ILF3 (ENSCABG00000004393) #16	SLC44A2 (ENSCABG00000004399) #17	AP1M2 (ENSCABG00000004408) #18	CDKN2D (ENSCABG00000004480) #19	KRI1 (ENSCABG00000004483) #20	ENSCABG00000004486	ATG4D (ENSCABG00000004488) #21	S1PR5 (ENSCABG00000004491) #22	KEAP1 (ENSCABG00000004500) #23	SPC24 (ENSCABG00000004502)	PDE4A (ENSCABG00000004523) #24
Goode s thornscrub tortoise	MODERN SPECIES	152	TIMM29 (ENSGEVG00005012977) #9	YIPF2 (ENSGEVG00005012953) #10	CARM1 (ENSGEVG00005012888) #11	ENSGEVG00005012855	TMED1 (ENSGEVG00005012804) #13	DNM2 (ENSGEVG00005012668) #14	QTRT1 (ENSGEVG00005012604) #15	ENSGEVG00005012568	ILF3 (ENSGEVG00005012517) #16	SLC44A2 (ENSGEVG00005012442) #17	AP1M2 (ENSGEVG00005012248) #18	CDKN2D (ENSGEVG00005012225) #19	ENSGEVG00005012156 #20	ENSGEVG00005012135	ATG4D (ENSGEVG00005012059) #21	S1PR5 (ENSGEVG00005011999) #22	KEAP1 (ENSGEVG00005011978) #23	SPC24 (ENSGEVG00005011958)	PDE4A (ENSGEVG00005011879) #24	CDC37 (ENSGEVG00005011840) #25	TYK2 (ENSGEVG00005011784) #26	RAVER1 (ENSGEVG00005019864) #28	ENSGEVG00005019859 #29	ENSGEVG00005019771 #27	ENSGEVG00005019702 #27	ENSGEVG00005019695 #27	ENSGEVG00005019679 #27	MRPL4 (ENSGEVG00005019653) #34	S1PR2 (ENSGEVG00005019646) #35	DNMT1 (ENSGEVG00005019590) #36	EIF3G (ENSGEVG00005019571)
Emydidae	ANCESTRAL SPECIES	48	ENSGT00390000018541 #9	ENSGT00390000010157.b #10	ENSGT00940000160377 #11	ENSGT00940000158445 #13	ENSGT00940000155764.C #14	ENSGT00530000063679.B #15	ENSGT00940000166551	ENSGT00940000163421	ENSGT00940000156719 #16	ENSGT00940000158178.f #17	ENSGT00940000158178.e #17	ENSGT00940000159089 #18	ENSGT00940000159801.B #19	ENSGT00390000005605 #20	ENSGT00530000063000.a.a.b #21	ENSGT01050000244887.A.a.a.a #22	ENSGT00940000159543 #23	ENSGT00390000005584	ENSGT00940000159788.b #24	ENSGT00390000013443.c #25	ENSGT00940000159869 #26	ENSGT00940000160550 #28	ENSGT00940000161143 #29	ENSGT00470000042444 #30	ENSGT00940000159005.s.a.b #27	ENSGT00940000159005.s.a.a #27	ENSGT00390000014512 #34	ENSGT01050000244887.A.a.a.b #35	ENSGT00940000172524	ENSGT00390000005100 #36	ENSGT00510000047802
painted turtle	MODERN SPECIES	992																S1PR5 (ENSCPBG00000004985) #22	KEAP1 (ENSCPBG00000004989) #23	SPC24 (ENSCPBG00000004995)	ENSCPBG00000005025 #24	AP1M2 (ENSCPBG00000005150) #18	CDKN2D (ENSCPBG00000005185) #19	ENSCPBG00000005190 #20	ATG4D (ENSCPBG00000005212) #21	ENSCPBG00000005230 #20	ENSCPBG00000005246	CLPP (ENSCPBG00000005251)	ALKBH7 (ENSCPBG00000005256)	PSPN (ENSCPBG00000005261)	GTF2F1 (ENSCPBG00000005268)	ENSCPBG00000005277	KHSRP (ENSCPBG00000005286)
Three-toed box turtle	MODERN SPECIES	382	LDLR (ENSTMTG00000022131)	SMARCA4 (ENSTMTG00000022193) #7	TIMM29 (ENSTMTG00000022274) #9	YIPF2 (ENSTMTG00000022276) #10	CARM1 (ENSTMTG00000022282) #11	TMED1 (ENSTMTG00000022306) #13	DNM2 (ENSTMTG00000022315) #14	ENSTMTG00000022328	ILF3 (ENSTMTG00000022335) #16	SLC44A2 (ENSTMTG00000022351) #17	ENSTMTG00000022355 #17	AP1M2 (ENSTMTG00000022362) #18	KRI1 (ENSTMTG00000022373) #20	ENSTMTG00000022382	ATG4D (ENSTMTG00000022388) #21	ENSTMTG00000022393 #22	KEAP1 (ENSTMTG00000022398) #23	ENSTMTG00000022401	PDE4A (ENSTMTG00000022405) #24	CDC37 (ENSTMTG00000022410) #25	TYK2 (ENSTMTG00000022414) #26	RAVER1 (ENSTMTG00000003375) #28	ENSTMTG00000003427 #27	ENSTMTG00000003458 #27	MRPL4 (ENSTMTG00000003492) #34	S1PR2 (ENSTMTG00000003524) #35	DNMT1 (ENSTMTG00000003556) #36	EIF3G (ENSTMTG00000003638)	ENSTMTG00000003662	PPAN (ENSTMTG00000003680)	OLFM2 (ENSTMTG00000003714)
Archosauria	ANCESTRAL SPECIES	34	ENSGT01050000244879.a.b	ENSGT00940000161046	ENSGT00940000156887 #7	ENSGT00390000018541 #9	ENSGT00390000010157.b #10	ENSGT00940000160377 #11	ENSGT00940000158445 #13	ENSGT00940000155764.C #14	ENSGT00530000063679.B #15	ENSGT00940000163421	ENSGT00940000156719 #16	ENSGT00940000158178 #17	ENSGT00940000159089 #18	ENSGT00390000005605 #20	ENSGT00530000063000.a.a.b #21	ENSGT01050000244887.A.a.a.a #22	ENSGT00940000159543 #23	ENSGT00390000005584	ENSGT00940000159788.b #24	ENSGT00390000013443.c #25	ENSGT00940000159869 #26	ENSGT00940000160550 #28	ENSGT00940000161143 #29	ENSGT00940000159005 #27	ENSGT00390000014512 #34	ENSGT01050000244887.A.a.a.b #35	ENSGT00390000005100 #36	ENSGT00510000047802	ENSGT01030000234518.C.a.a	ENSGT00530000064158	ENSGT00940000155412.b
Aves	ANCESTRAL SPECIES	34	ENSGT00940000161046	ENSGT00940000156887 #7	ENSGT00390000018541 #9	ENSGT00390000010157.b #10	ENSGT00940000160377 #11	ENSGT00940000158445 #13	ENSGT00940000155764.C #14	ENSGT00530000063679.B #15	ENSGT00940000163421	ENSGT00940000156719 #16	ENSGT00980000198857	ENSGT00940000158178 #17	ENSGT00940000159089 #18	ENSGT00390000005605 #20	ENSGT00530000063000.a.a.b #21	ENSGT01050000244887.A.a.a.a #22	ENSGT00940000159543 #23	ENSGT00390000005584	ENSGT00940000159788.b #24	ENSGT00390000013443.c #25	ENSGT00940000159869 #26	ENSGT00940000160550 #28	ENSGT00940000161143 #29	ENSGT00940000159005 #27	ENSGT00390000014512 #34	ENSGT01050000244887.A.a.a.b #35	ENSGT00390000005100 #36	ENSGT00510000047802	ENSGT01030000234518.C.a.a	ENSGT00530000064158	ENSGT00940000155412.b
Neognathae	ANCESTRAL SPECIES	34	ENSGT00940000161046	ENSGT00940000156887 #7	ENSGT00390000018541 #9	ENSGT00390000010157.b #10	ENSGT00940000160377 #11	ENSGT00940000158445 #13	ENSGT00940000155764.C #14	ENSGT00530000063679.B #15	ENSGT00940000163421	ENSGT00940000156719 #16	ENSGT00980000198857	ENSGT00940000158178 #17	ENSGT00940000159089 #18	ENSGT00390000005605 #20	ENSGT00530000063000.a.a.b #21	ENSGT01050000244887.A.a.a.a #22	ENSGT00940000159543 #23	ENSGT00390000005584	ENSGT00940000159788.b.e.a #24	ENSGT00390000013443.c #25	ENSGT00940000159869 #26	ENSGT00940000160550 #28	ENSGT00940000161143 #29	ENSGT00940000159005.p #27	ENSGT00390000014512 #34	ENSGT01050000244887.A.a.a.b #35	ENSGT00390000005100 #36	ENSGT00510000047802	ENSGT01030000234518.C.a.a	ENSGT00530000064158	ENSGT00940000155412.b
Galloanserae	ANCESTRAL SPECIES																	ENSGT01050000244887.A.a.a.a #22
Anatidae	ANCESTRAL SPECIES																	ENSGT01050000244887.A.a.a.a #22
Pink-footed goose	MODERN SPECIES	1094																S1PR5 (ENSABRG00000021761) #22
Duck	MODERN SPECIES	2266																ENSAPLG00000021051 #22
Neognathae_b	ANCESTRAL SPECIES	36	ENSGT00940000161046	ENSGT00940000156887 #7	ENSGT00390000018541 #9	ENSGT00390000010157.b #10	ENSGT00940000160377 #11	ENSGT00940000158445 #13	ENSGT00940000155764.C #14	ENSGT00530000063679.B #15	ENSGT00940000163421	ENSGT00940000156719 #16	ENSGT00980000198857	ENSGT00940000158178 #17	ENSGT00940000159089 #18	ENSGT00390000005605 #20	ENSGT00530000063000.a.a.b #21	ENSGT01050000244887.A.a.a.a #22	ENSGT00940000159543 #23	ENSGT00390000005584	ENSGT00940000159788.b.e.a #24	ENSGT00390000013443.c #25	ENSGT00940000159869 #26	ENSGT00940000160550 #28	ENSGT00940000161143 #29	ENSGT00940000159005.p #27	ENSGT00390000014512 #34	ENSGT01050000244887.A.a.a.b #35	ENSGT00390000005100 #36	ENSGT00510000047802	ENSGT00530000064158.k	ENSGT01030000234518.C.a.a	ENSGT00530000064158.l
Neognathae_c	ANCESTRAL SPECIES	38	ENSGT00940000161046	ENSGT00940000156887 #7	ENSGT00390000018541 #9	ENSGT00390000010157.b #10	ENSGT00940000160377 #11	ENSGT00940000158445 #13	ENSGT00940000155764.C #14	ENSGT00530000063679.B #15	ENSGT00940000163421	ENSGT00940000156719 #16	ENSGT00980000198857	ENSGT00940000158178 #17	ENSGT00940000159089 #18	ENSGT00390000005605 #20	ENSGT00530000063000.a.a.b #21	ENSGT01050000244887.A.a.a.a #22	ENSGT00940000159543 #23	ENSGT00960000192617	ENSGT00940000159788.b.e.a #24	ENSGT00390000013443.c #25	ENSGT00940000159869 #26	ENSGT00940000160550 #28	ENSGT00940000161143 #29	ENSGT00940000175590	ENSGT00390000014512 #34	ENSGT01050000244887.A.a.a.b #35	ENSGT00390000005100 #36	ENSGT00510000047802	ENSGT01030000234518.C.a.a	ENSGT00530000064158.l	ENSGT00940000155412.b
Golden eagle	MODERN SPECIES	66								QTRT1 (ENSACCG00020013687) #15	ENSACCG00020013657 #16	ENSACCG00020013614	ENSACCG00020013583 #17	AP1M2 (ENSACCG00020013538) #18	KRI1 (ENSACCG00020013483) #20	ATG4D (ENSACCG00020013452) #21	ENSACCG00020013430	S1PR5 (ENSACCG00020013384) #22	KEAP1 (ENSACCG00020013344) #23	ENSACCG00020013327	ENSACCG00020013310 #24
Kakapo	MODERN SPECIES	73	ENSSHBG00005016729	ENSSHBG00005016725	FBXL12 (ENSSHBG00005016723)	UBL5 (ENSSHBG00005016718)	PIN1 (ENSSHBG00005016716)	ENSSHBG00005016711	OLFM2 (ENSSHBG00005016706)	ENSSHBG00005016696	ENSSHBG00005016691	RDH8 (ENSSHBG00005016683)	PPAN (ENSSHBG00005016676)	EIF3G (ENSSHBG00005016670)	DNMT1 (ENSSHBG00005014896) #36	S1PR2 (ENSSHBG00005014775) #35	MRPL4 (ENSSHBG00005014769) #34	S1PR5 (ENSSHBG00005014763) #22	KEAP1 (ENSSHBG00005014757) #23	PDE4A (ENSSHBG00005014607) #24	CDC37 (ENSSHBG00005014562) #25
Anura	ANCESTRAL SPECIES	67	ENSGT00390000010157.b #10	ENSGT00940000160377 #11	ENSGT00940000158445 #13	ENSGT00940000155764.C #14	ENSGT00530000063679.B #15	ENSGT00940000166551	ENSGT00940000163421	ENSGT00940000155117.e.g	ENSGT00940000156719 #16	ENSGT00900000143551	ENSGT00940000158178 #17	ENSGT00940000159089 #18	ENSGT00940000159801.B #19	ENSGT00390000005605 #20	ENSGT00530000063000.a.a.b #21	ENSGT01050000244887.A.a.a.a #22	ENSGT00940000159543 #23	ENSGT00390000005584	ENSGT00940000159788.b #24	ENSGT00390000013443.c #25	ENSGT00940000159869 #26	ENSGT00940000160550 #28	ENSGT00470000042444 #30	ENSGT00940000159005 #27	ENSGT00390000014512 #34	ENSGT01050000244887.A.a.a.b #35	ENSGT00390000005100 #36	ENSGT00510000047802	ENSGT01030000234518.C.a.a	ENSGT00530000064158	ENSGT00940000154535.C
Frog	MODERN SPECIES	3	ENSXETG00000002261	ENSXETG00000040811	ENSXETG00000045194	ENSXETG00000039116	ENSXETG00000011652	ENSXETG00000042323	ENSXETG00000037381	ilf3 (ENSXETG00000011651) #16	ENSXETG00000041451	slc44a2 (ENSXETG00000011650) #17	ap1m2 (ENSXETG00000027684) #18	ENSXETG00000049143	cdkn2d (ENSXETG00000011649) #19	kri1 (ENSXETG00000011646) #20	atg4d (ENSXETG00000011644) #21	s1pr5 (ENSXETG00000039621) #22	keap1 (ENSXETG00000011638) #23	spc24 (ENSXETG00000027687)	pde4a (ENSXETG00000011637) #24	cdc37 (ENSXETG00000011625) #25	tyk2 (ENSXETG00000011623) #26	raver1 (ENSXETG00000011622) #28	zglp1 (ENSXETG00000039819) #30	icam5 (ENSXETG00000027690)	ENSXETG00000034765 #27	ENSXETG00000042034 #27	ENSXETG00000022064 #27	ENSXETG00000035655	ENSXETG00000036367 #27	mrpl4 (ENSXETG00000022060) #34	s1pr2 (ENSXETG00000041702) #35
Leishan spiny toad	MODERN SPECIES	6	ENSLLEG00000003925	ENSLLEG00000003930	ENSLLEG00000003934	ENSLLEG00000003939	ENSLLEG00000003943	ENSLLEG00000003949	ENSLLEG00000003952	ENSLLEG00000003959	ILF3 (ENSLLEG00000003992) #16	ENSLLEG00000004048 #17	ENSLLEG00000004081	AP1M2 (ENSLLEG00000004092) #18	CDKN2D (ENSLLEG00000004106) #19	KRI1 (ENSLLEG00000004114) #20	ATG4D (ENSLLEG00000004132) #21	S1PR5 (ENSLLEG00000004135) #22	ENSLLEG00000004138	KEAP1 (ENSLLEG00000004140) #23	ENSLLEG00000004143	ENSLLEG00000004149	PDE4A (ENSLLEG00000004157) #24	CDC37 (ENSLLEG00000004179) #25	TYK2 (ENSLLEG00000004188) #26	RAVER1 (ENSLLEG00000004201) #28	ENSLLEG00000004215 #30	ENSLLEG00000004228	ENSLLEG00000004236	ENSLLEG00000004246 #27	S1PR2 (ENSLLEG00000004255) #35	ENSLLEG00000004259	ENSLLEG00000004260
Coelacanth	MODERN SPECIES	611												CDC42 (ENSLACG00000015868)	ENSLACG00000014986	ZBTB40 (ENSLACG00000008263)	ENSLACG00000006019	S1PR5 (ENSLACG00000002254) #22	PRDX2 (ENSLACG00000000460)
Actinopterygii	ANCESTRAL SPECIES	172						ENSGT00940000161012	ENSGT00940000159313	ENSGT00740000117177	ENSGT00940000160389	ENSGT00510000047770.c.a	ENSGT00940000166140	ENSGT00940000157140.b.b	ENSGT00390000005147	ENSGT00470000042444 #30	ENSGT00940000161143 #29	ENSGT01050000244887.A.a.a.a #22	ENSGT00940000159543 #23	ENSGT00940000159089 #18	ENSGT00940000159801.B #19	ENSGT00390000005605 #20	ENSGT00950000182923.A	ENSGT00530000063000.a.a.b #21	ENSGT00940000157700	ENSGT00950000183144.B	ENSGT00390000010768	ENSGT00940000155828	ENSGT00940000161195	ENSGT00940000160152	ENSGT00940000161361	ENSGT00390000003817
Neopterygii	ANCESTRAL SPECIES	86									ENSGT00940000160389	ENSGT00510000047770.c.a	ENSGT00940000166140	ENSGT00940000157140.b.b	ENSGT00470000042444 #30	ENSGT00940000161143 #29	ENSGT00390000005147	ENSGT01050000244887.A.a.a.a #22	ENSGT00940000159543 #23	ENSGT00390000005584	ENSGT00940000161046	ENSGT00940000156887 #7	ENSGT00530000063000.a.a.b #21	ENSGT00940000157700	ENSGT00950000183144.B	ENSGT00390000010768	ENSGT00940000155828	ENSGT00940000161195.a.b	ENSGT00940000161195.a.a	ENSGT00940000160152	ENSGT00940000161361	ENSGT00390000003817	ENSGT00390000012267
Osteoglossocephalai	ANCESTRAL SPECIES	128															ENSGT00940000157140.b.b.a	ENSGT01050000244887.A.a.a.a #22	ENSGT00390000005584	ENSGT00390000005605 #20	ENSGT00940000159801.B #19	ENSGT00940000159089 #18	ENSGT00940000161195.b	ENSGT00940000160152	ENSGT00940000161361	ENSGT00390000003817	ENSGT00390000012267	ENSGT00940000163721	ENSGT00390000012078.a.b	ENSGT00940000177692	ENSGT00950000182916.a.b.a.a.a.b.a.b	ENSGT00390000013719	ENSGT00950000182917.a.b.b
Clupeocephala	DUPLICATION
Clupeocephala	ANCESTRAL SPECIES	5	ENSGT00440000038745.a.a.b	ENSGT00940000156865.b	ENSGT01050000244824.G	ENSGT00390000017673.b.l	ENSGT00640000091519	ENSGT00940000157805	ENSGT00390000012436.g	ENSGT00940000165343.c.b	ENSGT01030000234881	ENSGT00390000012436.h	ENSGT00940000165343.c.a	ENSGT00940000166140	ENSGT00940000157140.b.b.b	ENSGT00470000042444 #30	ENSGT00940000161143 #29	ENSGT01050000244887.A.a.a.a.i #22	ENSGT01050000244887.A.a.a.a.j #22	ENSGT00390000005584	ENSGT00390000005605 #20	ENSGT00940000154819.a.b.c.a	ENSGT00940000156887.a #7	ENSGT00530000063000.a.a.b.i #21	ENSGT00940000157700.d	ENSGT00950000183144.B	ENSGT00940000154277.b.b.b	ENSGT00940000155828	ENSGT00940000161195.a.b	ENSGT00940000161361	ENSGT00390000003817	ENSGT00940000163721	ENSGT00950000182916.a.b.a.a.a.b.a.a
Otomorpha	ANCESTRAL SPECIES	4	ENSGT00530000063801.a.a	ENSGT00940000157534.a.a	ENSGT00390000013260.A.b.b	ENSGT00930000151058	ENSGT00710000107036.a.b	ENSGT00940000156865.a	ENSGT00390000006009.b	ENSGT00390000017673.b.k	ENSGT01030000234881	ENSGT00390000012436.h	ENSGT00940000165343.c.a	ENSGT00940000166140	ENSGT00940000157140.b.b.b	ENSGT00470000042444 #30	ENSGT00940000161143 #29	ENSGT01050000244887.A.a.a.a.i #22	ENSGT00940000159543 #23	ENSGT00940000165948	ENSGT00940000159801.B #19	ENSGT00940000159089 #18	ENSGT00940000177737	ENSGT00940000154819.a.b.c.b	ENSGT00940000156887.b #7	ENSGT00390000002393	ENSGT00440000038745.b	ENSGT00730000111088.a	ENSGT00940000162556.E.a	ENSGT00390000016730	ENSGT00940000160049	ENSGT00940000156448.a.a	ENSGT00940000156057.s.a
Otophysi	ANCESTRAL SPECIES	8	ENSGT01030000234599.a.b.d.b.b.a.h	ENSGT00530000063801.a.a	ENSGT00940000157534.a.a	ENSGT00390000013260.A.b.b	ENSGT00930000151058	ENSGT00710000107036.a.b	ENSGT00940000156865.a	ENSGT00390000006009.b	ENSGT00390000017673.b.k	ENSGT01030000234881.c	ENSGT00390000012436.h	ENSGT00940000165343.c.a	ENSGT00940000166140	ENSGT00470000042444 #30	ENSGT00940000161143 #29	ENSGT01050000244887.A.a.a.a.i #22	ENSGT00940000159543 #23	ENSGT00940000165948	ENSGT00940000159801.B #19	ENSGT00940000159089 #18	ENSGT00940000154819.a.b.c.b	ENSGT00940000156887.b #7	ENSGT01100000263495.A.a.b.b.a.a.b.a	ENSGT00390000002393	ENSGT00440000038745.b	ENSGT00730000111088.a	ENSGT00940000162556.E.a	ENSGT00390000016730	ENSGT00940000160049	ENSGT00940000156448.a.a	ENSGT00940000156057.s.a
Characiphysae	ANCESTRAL SPECIES	18	ENSGT01030000234599.a.b.d.b.b.a.h	ENSGT00530000063801.a.a	ENSGT00940000157534.a.a	ENSGT00390000013260.A.b.b	ENSGT00930000151058	ENSGT00710000107036.a.b	ENSGT00940000156865.a	ENSGT00390000006009.b	ENSGT00390000017673.b.k	ENSGT01030000234881.c	ENSGT00390000012436.h	ENSGT00940000165343.c.a	ENSGT00940000166140	ENSGT00470000042444 #30	ENSGT00940000161143 #29	ENSGT01050000244887.A.a.a.a.i #22	ENSGT00940000159543 #23	ENSGT00940000165948	ENSGT00940000159801.B #19	ENSGT00940000159089 #18	ENSGT00940000154819.a.b.c.b	ENSGT00940000156887.b #7	ENSGT01100000263495.A.a.b.b.a.a.b.a	ENSGT00390000002393	ENSGT00440000038745.b	ENSGT00730000111088.a	ENSGT00940000162556.E.a	ENSGT00390000016730	ENSGT00940000160049	ENSGT00940000156448.a.a	ENSGT00940000156057.s.a
Channel catfish	MODERN SPECIES	3	rbfox2 (ENSIPUG00000016896)	pde6h (ENSIPUG00000016874)	erp27 (ENSIPUG00000016860)	ENSIPUG00000016849	ENSIPUG00000016778	ENSIPUG00000016750	hmox (ENSIPUG00000016729)	ENSIPUG00000016708	ENSIPUG00000016698	ENSIPUG00000016677	ENSIPUG00000016660	ENSIPUG00000016654	ENSIPUG00000016647	zglp1 (ENSIPUG00000016640) #30	fdx1l (ENSIPUG00000016629) #29	S1pr1 (ENSIPUG00000016611) #22	keap1 (ENSIPUG00000016583) #23	ENSIPUG00000016571	cdkn2d (ENSIPUG00000016566) #19	AP1M2 (ENSIPUG00000016495) #18	ENSIPUG00000016428	SMARCA4 (ENSIPUG00000016346) #7	ENSIPUG00000016328	kiaa0430 (ENSIPUG00000016273)	bmerb1 (ENSIPUG00000016202)	mp17l (ENSIPUG00000016127)	zgc:158417 (ENSIPUG00000016110)	ntan1 (ENSIPUG00000015993)	ddx17 (ENSIPUG00000015768)	gga1 (ENSIPUG00000015656)	micall1 (ENSIPUG00000015621)
Characiphysae_b	ANCESTRAL SPECIES	46	ENSGT01030000234599.a.b.d.b.b.a.h	ENSGT00530000063801.a.a	ENSGT00940000157534.a.a	ENSGT00390000013260.A.b.b	ENSGT00930000151058	ENSGT00710000107036.a.b	ENSGT00940000156865.a	ENSGT00390000006009.b	ENSGT00390000017673.b.k	ENSGT01030000234881.c	ENSGT00390000012436.h	ENSGT00940000165343.c.a	ENSGT00940000166140	ENSGT00470000042444 #30	ENSGT00940000161143 #29	ENSGT01050000244887.A.a.a.a.i #22	ENSGT00940000159543 #23	ENSGT00940000165948	ENSGT00940000159801.B #19	ENSGT00940000159089 #18	ENSGT00940000154819.a.b.c.b	ENSGT00940000156887.b #7	ENSGT01100000263495.A.a.b.b.a.a.b.a	ENSGT00390000002393	ENSGT00440000038745.b	ENSGT00730000111088.a	ENSGT00940000162556.E.a	ENSGT00390000016730	ENSGT00940000160049	ENSGT00940000156448.a.a	ENSGT00940000156057.s.a
Characoidei	ANCESTRAL SPECIES	23	ENSGT00390000016774	ENSGT01030000234599.a.b.d.b.b.a.g	ENSGT01030000234599.a.b.d.b.b.a.h	ENSGT00530000063801.a.a	ENSGT00940000157534.a.a	ENSGT00390000013260.A.b.b	ENSGT00930000151058	ENSGT00710000107036.a.b	ENSGT00940000156865.a	ENSGT00390000017673.b.k	ENSGT00390000012436.h	ENSGT00940000165343.c.a	ENSGT00940000166140	ENSGT00470000042444 #30	ENSGT00940000161143 #29	ENSGT01050000244887.A.a.a.a.i #22	ENSGT00940000159543 #23	ENSGT00940000165948	ENSGT00940000159801.B #19	ENSGT00940000159089 #18	ENSGT00940000154819.a.b.c.b	ENSGT00940000156887.b #7	ENSGT01100000263495.A.a.b.b.a.a.b.a	ENSGT00390000002393	ENSGT00440000038745.b	ENSGT00730000111088.a	ENSGT00940000162556.E.a	ENSGT00390000016730	ENSGT00940000160049	ENSGT00940000156448.a.a	ENSGT00940000156057.s.a
Red-bellied piranha	MODERN SPECIES	25	ENSPNAG00000007414	ENSPNAG00000007413	ENSPNAG00000007412	atf4a (ENSPNAG00000000169)	rbfox2 (ENSPNAG00000000168)	pde6ha (ENSPNAG00000000167)	ENSPNAG00000000166	ENSPNAG00000007410	ENSPNAG00000007409	HMOX1 (ENSPNAG00000007407)	ENSPNAG00000007406	ENSPNAG00000000165	ENSPNAG00000007405	zglp1 (ENSPNAG00000007404) #30	fdx2 (ENSPNAG00000007403) #29	s1pr5b (ENSPNAG00000000164) #22	keap1b (ENSPNAG00000000163) #23	ENSPNAG00000030054	CDKN2D (ENSPNAG00000030052) #19	ap1m2 (ENSPNAG00000030049) #18	ENSPNAG00000030044	SMARCA4 (ENSPNAG00000006636) #7	ENSPNAG00000030023	MARF1 (ENSPNAG00000030013)	bmerb1 (ENSPNAG00000029988)	MPV17L (ENSPNAG00000029981)	ENSPNAG00000006584	ENSPNAG00000029964	ENSPNAG00000029960	ddx17 (ENSPNAG00000029948)	gga1 (ENSPNAG00000029929)
Mexicana tetra	MODERN SPECIES	4	ENSAMXG00000011475	ENSAMXG00000036773	atf4a (ENSAMXG00000033167)	rbfox2 (ENSAMXG00000011451)	pde6ha (ENSAMXG00000011446)	ENSAMXG00000011444	ENSAMXG00000040535	ENSAMXG00000031471	ENSAMXG00000043172	ENSAMXG00000011421	ENSAMXG00000011410	ENSAMXG00000040688	ENSAMXG00000038618	ENSAMXG00000034709	fdx2 (ENSAMXG00000038026) #29	s1pr5b (ENSAMXG00000025439) #22	keap1b (ENSAMXG00000011366) #23	ENSAMXG00000011356	ENSAMXG00000033328 #19	ap1m2 (ENSAMXG00000031560) #18	ENSAMXG00000011312	SMARCA4 (ENSAMXG00000011238) #7	ENSAMXG00000033110	MARF1 (ENSAMXG00000011210)	bmerb1 (ENSAMXG00000011201)	MPV17L (ENSAMXG00000011191)	ENSAMXG00000036694	ENSAMXG00000040955	ENSAMXG00000033037	ENSAMXG00000017360	ENSAMXG00000036369
Electric eel	MODERN SPECIES	10	atf4a (ENSEEEG00000004858)	ENSEEEG00000004859	rbfox2 (ENSEEEG00000004860)	ENSEEEG00000004861	ENSEEEG00000004863	ENSEEEG00000004864	ENSEEEG00000004865	HMOX1 (ENSEEEG00000004866)	ENSEEEG00000004867	ENSEEEG00000004868	ENSEEEG00000004870	ENSEEEG00000004871	ENSEEEG00000004872	zglp1 (ENSEEEG00000004874) #30	fdx2 (ENSEEEG00000004875) #29	s1pr5b (ENSEEEG00000004877) #22	keap1b (ENSEEEG00000004878) #23	ENSEEEG00000004879	CDKN2D (ENSEEEG00000004881) #19	ap1m2 (ENSEEEG00000004883) #18	ENSEEEG00000005428	SMARCA4 (ENSEEEG00000005806) #7	ENSEEEG00000005913	MARF1 (ENSEEEG00000005915)	bmerb1 (ENSEEEG00000005923)	ENSEEEG00000005925	mtif2 (ENSEEEG00000005929)	ENSEEEG00000005942	ENSEEEG00000005948	ENSEEEG00000005951	bcl11ab (ENSEEEG00000005952)
Cyprinoidei	ANCESTRAL SPECIES	103	ENSGT00900000142364	ENSGT00390000016774	ENSGT00530000063801.a.a	ENSGT00940000157534.a.a	ENSGT00390000013260.A.b.b	ENSGT00930000151058	ENSGT00710000107036.a.b	ENSGT00940000156865.a	ENSGT00390000017673.b.k	ENSGT01030000234881.c	ENSGT00390000012436.h	ENSGT00940000165343.c.a	ENSGT00940000166140	ENSGT00470000042444 #30	ENSGT00940000161143 #29	ENSGT01050000244887.A.a.a.a.i #22	ENSGT00940000159543 #23	ENSGT00940000165948	ENSGT00940000159801.B #19	ENSGT00940000159089.g #18	ENSGT00940000154819.a.b.c.b	ENSGT00940000156887.b #7	ENSGT01100000263495.A.a.b.b.a.a.b.a	ENSGT00390000002393	ENSGT00440000038745.b	ENSGT00730000111088.a	ENSGT00530000064137.a.b	ENSGT00950000183003.a.a.b.c.a
Cyprininae	ANCESTRAL SPECIES	355	ENSGT01030000234599.a.b.d.b.b.a.g	ENSGT01030000234599.a.b.d.b.b.a.h	ENSGT00530000063801.a.a	ENSGT00940000157534.a.a	ENSGT00390000013260.A.b.b.h.b	ENSGT00930000151058	ENSGT00940000173517	ENSGT00940000156865.a.d	ENSGT00390000017673.b.k	ENSGT01030000234881.c	ENSGT00390000012436.h	ENSGT00940000165343.c.a.a.b	ENSGT00940000166140	ENSGT00470000042444 #30	ENSGT00940000161143.e #29	ENSGT01050000244887.A.a.a.a.i #22	ENSGT00940000159543 #23	ENSGT00940000165948	ENSGT00940000159801.B #19	ENSGT00940000159089.g #18	ENSGT00940000154819.a.b.c.b.a.a	ENSGT00940000159089.h #18	ENSGT00940000154819.a.b.c.b.a.b	ENSGT00940000156887.b #7	ENSGT01100000263495.A.a.b.b.a.a.b.a	ENSGT00390000002393	ENSGT00440000038745.b	ENSGT00730000111088.a	ENSGT00530000064137.a.b.z
Goldfish	DUPLICATION
Goldfish	MODERN SPECIES	46	ENSCARG00000031547	cacng2b (ENSCARG00000031562)	ENSCARG00000031577	TAB1 (ENSCARG00000031618)	MGAT3 (ENSCARG00000032516)	ENSCARG00000032553	ENSCARG00000032563	ENSCARG00000032576	atf4a (ENSCARG00000032592)	rbfox2 (ENSCARG00000032604)	pde6ha (ENSCARG00000032617)	ENSCARG00000032626	ENSCARG00000032634	fdx2 (ENSCARG00000032658) #29	ENSCARG00000032675	s1pr5b (ENSCARG00000032686) #22	ENSCARG00000032693	CDKN2D (ENSCARG00000032699) #19	ENSCARG00000032712 #18	ENSCARG00000032756	SMARCA4 (ENSCARG00000033077) #7	ENSCARG00000033222	ENSCARG00000033227	bmerb1 (ENSCARG00000033238)	ENSCARG00000033366	MBD5 (ENSCARG00000033452)	bcl11ab (ENSCARG00000000179)	ENSCARG00000000202	ENSCARG00000000231	rps27a (ENSCARG00000000255)	CCDC88A (ENSCARG00000000374)
Goldfish	MODERN SPECIES	3204															ENSCARG00000048439	s1pr5b (ENSCARG00000048410) #22	keap1b (ENSCARG00000048321) #23	ENSCARG00000048279	ap1m2 (ENSCARG00000047696) #18	ENSCARG00000047000	SMARCA4 (ENSCARG00000046626) #7	ENSCARG00000046554	MARF1 (ENSCARG00000045618)	bmerb1 (ENSCARG00000045544)	MBD5 (ENSCARG00000045526)	sowahcb (ENSCARG00000045489)
Cyprininae_a	ANCESTRAL SPECIES	326	ENSGT01030000234599.a.b.d.b.b.a.g	ENSGT00530000063801.a.a	ENSGT00940000157534.a.a	ENSGT00390000013260.A.b.b.h.b	ENSGT00930000151058	ENSGT00940000173517	ENSGT00940000156865.a.d	ENSGT00390000017673.b.k	ENSGT01030000234881.c	ENSGT00390000012436.h	ENSGT00940000165343.d	ENSGT00940000165343.c.a.b	ENSGT00940000166140	ENSGT00470000042444 #30	ENSGT00940000161143.e #29	ENSGT01050000244887.A.a.a.a.i #22	ENSGT00940000159543 #23	ENSGT00940000165948	ENSGT00940000159801.B #19	ENSGT00940000159089.g #18	ENSGT00940000154819.a.b.c.b.a.a	ENSGT00940000156887.b #7	ENSGT01100000263495.A.a.b.b.a.a.b.a	ENSGT00390000002393	ENSGT00440000038745.b.j	ENSGT00730000111088.a	ENSGT00530000064137.a.b.y	ENSGT00950000183003.a.a.b.c.a
Common carp reference	DUPLICATION
Common carp reference	MODERN SPECIES	16	ENSCCRG00000034847	ENSCCRG00000031227	ENSCCRG00000072481	ENSCCRG00000045152	ENSCCRG00000063366	ENSCCRG00000071368	pde6ha (ENSCCRG00000063430)	ENSCCRG00000065946	ENSCCRG00000079895	ENSCCRG00000067237	ENSCCRG00000032092	ENSCCRG00000009863	ENSCCRG00000030829	ENSCCRG00000030832	ENSCCRG00000035946	s1pr5b (ENSCCRG00000054053) #22	ENSCCRG00000076781	keap1b (ENSCCRG00000004878) #23	ENSCCRG00000058945	ap1m2 (ENSCCRG00000003938) #18	ENSCCRG00000060832	ENSCCRG00000055679	ENSCCRG00000063595	ENSCCRG00000066377 #7	MARF1 (ENSCCRG00000064599)	bmerb1 (ENSCCRG00000064273)	MPV17L (ENSCCRG00000035638)	ENSCCRG00000077165	sowahcb (ENSCCRG00000027231)	ENSCCRG00000075949
Common carp reference	MODERN SPECIES	10	ENSCCRG00000073361	ENSCCRG00000001823	ENSCCRG00000075800	ENSCCRG00000065236	ENSCCRG00000070243	atf4a (ENSCCRG00000050073)	rbfox2 (ENSCCRG00000076458)	pde6ha (ENSCCRG00000079576)	ENSCCRG00000068111	ENSCCRG00000070287	ENSCCRG00000078032	ENSCCRG00000041377	zglp1 (ENSCCRG00000064737) #30	fdx2 (ENSCCRG00000073259) #29	ENSCCRG00000067482	s1pr5b (ENSCCRG00000075861) #22	ENSCCRG00000064400	ap1m2 (ENSCCRG00000060231) #18	ENSCCRG00000065710	ENSCCRG00000080857	ENSCCRG00000074467	bmerb1 (ENSCCRG00000054216)	ENSCCRG00000032455	ENSCCRG00000066160
Golden-line barbel	DUPLICATION
Golden-line barbel	MODERN SPECIES	2027															fdx2 (ENSSGRG00000007825) #29	s1pr5b (ENSSGRG00000007826) #22	ENSSGRG00000007828	CDKN2D (ENSSGRG00000007829) #19	ap1m2 (ENSSGRG00000007830) #18
Golden-line barbel	MODERN SPECIES	1236	ENSSGRG00000002374	atf4a (ENSSGRG00000002375)	ENSSGRG00000002377	rbfox2 (ENSSGRG00000002378)	pde6ha (ENSSGRG00000002380)	ENSSGRG00000002383	ENSSGRG00000002385	TOM1 (ENSSGRG00000002386)	ENSSGRG00000002389	ENSSGRG00000002390	ENSSGRG00000002391	ENSSGRG00000002392	ENSSGRG00000002394	zglp1 (ENSSGRG00000002393) #30	fdx2 (ENSSGRG00000002395) #29	s1pr5b (ENSSGRG00000002396) #22	keap1b (ENSSGRG00000002402) #23	ENSSGRG00000002403	ap1m2 (ENSSGRG00000002407) #18	ENSSGRG00000003736	bmerb1 (ENSSGRG00000005293)
Zebrafish	MODERN SPECIES	21	grap2b (ENSDARG00000101169)	fam83fb (ENSDARG00000104188)	cyth4b (ENSDARG00000103984)	ENSDARG00000103662	ENSDARG00000099309	pde6ha (ENSDARG00000102558)	rbfox2 (ENSDARG00000052182)	atf4a (ENSDARG00000111939)	ENSDARG00000091124	ENSDARG00000006544	MGAT3 (ENSDARG00000036619)	TAB1 (ENSDARG00000036613)	ENSDARG00000110178	zglp1 (ENSDARG00000067669) #30	fdx2 (ENSDARG00000052190) #29	s1pr5b (ENSDARG00000052192) #22	keap1b (ENSDARG00000074634) #23	ENSDARG00000078283	CDKN2D (ENSDARG00000094176) #19	ap1m2 (ENSDARG00000096454) #18	ENSDARG00000026759	SMARCA4 (ENSDARG00000104339) #7	crygm4 (ENSDARG00000008219)	sowahcb (ENSDARG00000059582)	ENSDARG00000059581	bmerb1 (ENSDARG00000086706)	MARF1 (ENSDARG00000115222)	ENSDARG00000112811
Clupeiformes	ANCESTRAL SPECIES	52	ENSGT00530000063801.a.a	ENSGT00940000157534.a.a	ENSGT00390000013260.A.b.b	ENSGT00930000151058	ENSGT00710000107036.a.b	ENSGT00940000156865.a	ENSGT00390000006009.b	ENSGT00390000017673.b.k	ENSGT01030000234881	ENSGT00390000012436.h	ENSGT00940000165343.c.a	ENSGT00940000166140	ENSGT00940000157140.b.b.b	ENSGT00470000042444 #30	ENSGT00940000161143.h #29	ENSGT01050000244887.A.a.a.a.i #22	ENSGT00940000159543 #23	ENSGT00940000165948	ENSGT00940000159801.B #19	ENSGT00940000159089 #18	ENSGT00940000177737	ENSGT00940000154819.a.b.c.b	ENSGT00940000156887.b #7	ENSGT00390000002393	ENSGT00440000038745.b	ENSGT00730000111088.a	ENSGT00390000016730	ENSGT00940000160049	ENSGT00940000156448.a.a	ENSGT00940000156057.s.a	ENSGT00390000010231
Atlantic herring	MODERN SPECIES	18	rbfox2 (ENSCHAG00000025529)	pde6ha (ENSCHAG00000025522)	ENSCHAG00000025519	ENSCHAG00000025511	ENSCHAG00000025506	ENSCHAG00000025482	ENSCHAG00000025474	HMOX1 (ENSCHAG00000025466)	ENSCHAG00000025464	ENSCHAG00000025462	ENSCHAG00000025461	ENSCHAG00000025457	foxd7 (ENSCHAG00000025453)	ENSCHAG00000025452 #30	fdx2 (ENSCHAG00000025451) #29	s1pr5b (ENSCHAG00000025449) #22	keap1b (ENSCHAG00000025443) #23	ENSCHAG00000025442	CDKN2D (ENSCHAG00000025438) #19	ap1m2 (ENSCHAG00000025169) #18	ENSCHAG00000025154	ENSCHAG00000022687	SMARCA4 (ENSCHAG00000011670) #7	MARF1 (ENSCHAG00000010402)	bmerb1 (ENSCHAG00000010319)	MPV17L (ENSCHAG00000010298)	ENSCHAG00000010226	ENSCHAG00000010208	ENSCHAG00000010180	ENSCHAG00000010171	ENSCHAG00000010153
Euteleosteomorpha	ANCESTRAL SPECIES	136	ENSGT00940000158145.a	ENSGT00390000000053.a	ENSGT00390000004368	ENSGT00940000157552.s.a	ENSGT00940000164506.b.a	ENSGT00530000063926.b	ENSGT00950000182916.a.b.a.a.a.b.a.a	ENSGT00940000163721	ENSGT00390000017673.b.k	ENSGT00390000012436.h	ENSGT00940000165343.c.a	ENSGT00940000166140	ENSGT00940000157140.b.b.a	ENSGT00470000042444 #30	ENSGT00940000161143 #29	ENSGT01050000244887.A.a.a.a.i #22	ENSGT00940000159543 #23	ENSGT00940000165948	ENSGT00940000159801.B #19	ENSGT00940000159089 #18	ENSGT00940000177737	ENSGT00940000154819.a.b.c.b	ENSGT00940000156887.b #7	ENSGT00530000063000.a.a.b.j #21	ENSGT00940000157700.c	ENSGT00390000010768
Acanthomorphata	ANCESTRAL SPECIES	40	ENSGT00940000158145.a	ENSGT00390000000053.a	ENSGT00390000004368	ENSGT00940000157552.s.a	ENSGT00940000164506.b.a	ENSGT00530000063926.b	ENSGT00950000182916.a.b.a.a.a.b.a.a	ENSGT00940000163721	ENSGT00390000017673.b.k	ENSGT00390000012436.h	ENSGT00940000165343.c.a	ENSGT00940000166140	ENSGT00940000157140.b.b.a	ENSGT00470000042444 #30	ENSGT00940000161143 #29	ENSGT01050000244887.A.a.a.a.i #22	ENSGT00940000159543 #23	ENSGT00940000165948	ENSGT00940000159801.B #19	ENSGT00940000159089 #18	ENSGT00940000177737	ENSGT00940000154819.a.b.c.b	ENSGT00940000156887.b #7	ENSGT00530000063000.a.a.b.j #21	ENSGT00940000157700.c	ENSGT00390000010768	ENSGT00940000158046.a.b	ENSGT01030000234586.A.b.a	ENSGT00940000157340.k.a	ENSGT00390000017489.b	ENSGT00950000183213.a.a.a
Euacanthomorphacea	ANCESTRAL SPECIES	3	ENSGT00940000158145.a	ENSGT00390000000053.a	ENSGT00390000004368	ENSGT00940000157552.s.a	ENSGT00940000164506.b.a	ENSGT00530000063926.b	ENSGT00950000182916.a.b.a.a.a.b.a.a	ENSGT00940000163721	ENSGT00390000017673.b.k	ENSGT00390000012436.h	ENSGT00940000165343.c.a	ENSGT00940000166140	ENSGT00940000157140.b.b.a	ENSGT00470000042444 #30	ENSGT00940000161143 #29	ENSGT01050000244887.A.a.a.a.i #22	ENSGT00940000159543 #23	ENSGT00940000165948	ENSGT00940000159801.B #19	ENSGT00940000159089 #18	ENSGT00940000177737	ENSGT00940000154819.a.b.c.b	ENSGT00940000156887.b #7	ENSGT00530000063000.a.a.b.j #21	ENSGT00940000157700.c	ENSGT00390000010768	ENSGT00940000158046.a.b	ENSGT01030000234586.A.b.a	ENSGT00940000157340.k.a	ENSGT00390000017489.b	ENSGT00950000183213.a.a.a
Percomorphaceae	ANCESTRAL SPECIES	17	ENSGT00940000158145.a	ENSGT00390000000053.a	ENSGT00390000004368	ENSGT00940000157552.s.a	ENSGT00940000164506.b.a	ENSGT00530000063926.b	ENSGT00950000182916.a.b.a.a.a.b.a.a	ENSGT00940000163721	ENSGT00390000017673.b.k	ENSGT00390000012436.h	ENSGT00940000165343.c.a	ENSGT00940000166140	ENSGT00940000157140.b.b.a	ENSGT00470000042444 #30	ENSGT00940000161143 #29	ENSGT01050000244887.A.a.a.a.i #22	ENSGT00940000159543 #23	ENSGT00940000165948	ENSGT00940000159801.B #19	ENSGT00940000159089 #18	ENSGT00940000177737	ENSGT00940000154819.a.b.c.b	ENSGT00940000156887.b #7	ENSGT00530000063000.a.a.b.j #21	ENSGT00940000157700.c	ENSGT00390000010768	ENSGT00940000158046.a.b	ENSGT01030000234586.A.b.a	ENSGT00940000157340.k.a	ENSGT00390000017489.b	ENSGT00950000183213.a.a.a
Tiger tail seahorse	MODERN SPECIES	518	ENSHCOG00000017190	ENSHCOG00000017174	elof1 (ENSHCOG00000017140)	pld6 (ENSHCOG00000017130)	RAB3D (ENSHCOG00000017123)	tspan34 (ENSHCOG00000017111)	dand5 (ENSHCOG00000017105)	NFIX (ENSHCOG00000017088)	rnf11a (ENSHCOG00000017008)	HMOX1 (ENSHCOG00000016995)	ENSHCOG00000016983	ENSHCOG00000016961	ENSHCOG00000016954	ENSHCOG00000016944 #30	fdx2 (ENSHCOG00000016915) #29	s1pr5b (ENSHCOG00000016900) #22	keap1b (ENSHCOG00000016897) #23	ENSHCOG00000016889	CDKN2D (ENSHCOG00000016885) #19	ap1m2 (ENSHCOG00000016877) #18	ENSHCOG00000016845	ENSHCOG00000016836 #7	ENSHCOG00000016821 #7	atg4da (ENSHCOG00000016797) #21	MAST1 (ENSHCOG00000016730)	ENSHCOG00000016696	rnaseh2a (ENSHCOG00000016593)	ENSHCOG00000016569	KCNJ4 (ENSHCOG00000016525)	ENSHCOG00000016404	ENSHCOG00000016398
Percomorphaceae_B	ANCESTRAL SPECIES		ENSGT00390000000053.a	ENSGT00390000004368	ENSGT00940000157552.s.a	ENSGT00940000164506.b.a	ENSGT00530000063926.b	ENSGT00950000182916.a.b.a.a.a.b.a.a	ENSGT00940000163721	ENSGT00390000017673.b.k	ENSGT00390000012436.h	ENSGT00940000165343.c.a	ENSGT00940000166140	ENSGT00950000182944.A.b.d	ENSGT00940000157140.b.b.a	ENSGT00470000042444 #30	ENSGT00940000161143 #29	ENSGT01050000244887.A.a.a.a.i #22	ENSGT00940000159543 #23	ENSGT00940000165948	ENSGT00940000159801.B #19	ENSGT00940000159089 #18	ENSGT00940000154819.a.b.c.b.d	ENSGT00940000177737	ENSGT00940000154819.a.b.c.b.c.a	ENSGT00940000156887.b #7	ENSGT00530000063000.a.a.b.j #21	ENSGT00940000157700.c	ENSGT00390000010768	ENSGT00940000158046.a.b	ENSGT01030000234586.A.b.a	ENSGT00650000094757	ENSGT00940000157340.k.a
Ovalentaria	ANCESTRAL SPECIES		ENSGT00390000000053.a	ENSGT00390000004368	ENSGT00940000157552.s.a	ENSGT00940000164506.b.a	ENSGT00530000063926.b	ENSGT00950000182916.a.b.a.a.a.b.a.a	ENSGT00940000163721	ENSGT00390000017673.b.k	ENSGT00390000012436.h	ENSGT00940000165343.c.a	ENSGT00940000166140	ENSGT00950000182944.A.b.d	ENSGT00940000157140.b.b.a	ENSGT00470000042444 #30	ENSGT00940000161143 #29	ENSGT01050000244887.A.a.a.a.i #22	ENSGT00940000159543 #23	ENSGT00940000165948	ENSGT00940000159801.B #19	ENSGT00940000159089 #18	ENSGT00940000154819.a.b.c.b.d	ENSGT00940000156887.b #7	ENSGT00530000063000.a.a.b.j #21	ENSGT00940000157700.c	ENSGT00390000010768	ENSGT00940000158046.a.b	ENSGT01030000234586.A.b.a	ENSGT00650000094757	ENSGT00940000157340.k.a	ENSGT00390000017489.b	ENSGT00950000183213.a.a.a
Atherinomorphae	ANCESTRAL SPECIES	20	ENSGT00390000000053.a	ENSGT00390000004368	ENSGT00940000157552.s.a	ENSGT00940000164506.b.a	ENSGT00530000063926.b	ENSGT00950000182916.a.b.a.a.a.b.a.a	ENSGT00940000163721	ENSGT00390000017673.b.k	ENSGT00390000012436.h	ENSGT00940000165343.c.a	ENSGT00940000166140	ENSGT00950000182944.A.b.d	ENSGT00940000157140.b.b.a	ENSGT00470000042444 #30	ENSGT00940000161143 #29	ENSGT01050000244887.A.a.a.a.i #22	ENSGT00940000159543 #23	ENSGT00940000165948	ENSGT00940000159801.B #19	ENSGT00940000159089 #18	ENSGT00940000154819.a.b.c.b.d	ENSGT00940000156887.b #7	ENSGT00530000063000.a.a.b.j #21	ENSGT00940000157700.c	ENSGT00390000010768	ENSGT00940000158046.a.b	ENSGT01030000234586.A.b.a	ENSGT00650000094757	ENSGT00940000157340.k.a	ENSGT00390000017489.b	ENSGT00950000183213.a.a.a
Cyprinodontiformes	ANCESTRAL SPECIES	18	ENSGT00390000000053.a	ENSGT00390000004368	ENSGT00940000157552.s.a	ENSGT00940000164506.b.a	ENSGT00530000063926.b	ENSGT00950000182916.a.b.a.a.a.b.a.a	ENSGT00940000163721	ENSGT00390000017673.b.k	ENSGT00390000012436.h	ENSGT00940000165343.c.a	ENSGT00940000166140	ENSGT00950000182944.A.b.d	ENSGT00940000157140.b.b.a	ENSGT00470000042444 #30	ENSGT00940000161143 #29	ENSGT01050000244887.A.a.a.a.i #22	ENSGT00940000159543 #23	ENSGT00940000165948	ENSGT00940000159801.B #19	ENSGT00940000159089 #18	ENSGT00940000154819.a.b.c.b.d	ENSGT00940000156887.b #7	ENSGT00530000063000.a.a.b.j #21	ENSGT00940000157700.c	ENSGT00390000010768	ENSGT00940000158046.a.b	ENSGT01030000234586.A.b.a	ENSGT00650000094757	ENSGT00940000157340.k.a	ENSGT00390000017489.b	ENSGT00950000183213.a.a.a
Aplocheiloidei	ANCESTRAL SPECIES	32	ENSGT00940000158145.a	ENSGT00390000000053.a	ENSGT00390000004368	ENSGT00940000157552.s.a	ENSGT00940000164506.b.a	ENSGT00530000063926.b	ENSGT00950000182916.a.b.a.a.a.b.a.a	ENSGT00940000163721	ENSGT00390000017673.b.k	ENSGT00940000165343.c.a	ENSGT00940000166140	ENSGT00950000182944.A.b.d	ENSGT00940000157140.b.b.a	ENSGT00470000042444 #30	ENSGT00940000161143 #29	ENSGT01050000244887.A.a.a.a.i #22	ENSGT00940000159543 #23	ENSGT00940000165948	ENSGT00940000159801.B #19	ENSGT00940000159089 #18	ENSGT00940000154819.a.b.c.b.d	ENSGT00940000156887.b #7	ENSGT00530000063000.a.a.b.j #21	ENSGT00940000157700.c	ENSGT00390000010768	ENSGT00940000158046.a.b	ENSGT01030000234586.A.b.a	ENSGT00940000157340.k.a	ENSGT00390000017489.b	ENSGT00950000183213.a.a.a	ENSGT00390000017504
Turquoise killifish	MODERN SPECIES	1617	ENSNFUG00015010536	ENSNFUG00015010545	ENSNFUG00015010577	ENSNFUG00015010608	ENSNFUG00015010617	ENSNFUG00015010624	ENSNFUG00015010627	ENSNFUG00015010631	SRP68 (ENSNFUG00015010652)	EVPLA (ENSNFUG00015010882)	ten1 (ENSNFUG00015010921)	acox1 (ENSNFUG00015010985)	ENSNFUG00015011735	RHBDF2 (ENSNFUG00015011754)	aanat1 (ENSNFUG00015011841)	ENSNFUG00015011853 #22	keap1b (ENSNFUG00015011864) #23	CYGB (ENSNFUG00015011879)	ENSNFUG00015011886	SPHK1 (ENSNFUG00015011894)	fdx2 (ENSNFUG00015012082) #29	ENSNFUG00015012087 #30	CABZ01066695.1 (ENSNFUG00015012090)	ENSNFUG00015012097	HMOX1 (ENSNFUG00015012103)	RNF11A (ENSNFUG00015012110)	ENSNFUG00015012113	nags (ENSNFUG00015012116)	NFIX (ENSNFUG00015012171)	ENSNFUG00015012241	ENSNFUG00015012243
Mangrove rivulus	MODERN SPECIES	138	ENSKMAG00000018914	elof1 (ENSKMAG00000018948)	pld6 (ENSKMAG00000018960)	ENSKMAG00000018973	tspan34 (ENSKMAG00000018993)	dand5 (ENSKMAG00000019010)	NFIX (ENSKMAG00000019092)	rnf11a (ENSKMAG00000019233)	ENSKMAG00000019249	ENSKMAG00000019262	ENSKMAG00000019283	ENSKMAG00000019305	ENSKMAG00000019315	ENSKMAG00000019325 #30	fdx2 (ENSKMAG00000019336) #29	s1pr5b (ENSKMAG00000019347) #22	keap1b (ENSKMAG00000019360) #23	ENSKMAG00000019395	CDKN2D (ENSKMAG00000019404) #19	ap1m2 (ENSKMAG00000019421) #18	ENSKMAG00000019458	SMARCA4 (ENSKMAG00000019518) #7	atg4da (ENSKMAG00000019629) #21	MAST1 (ENSKMAG00000019681)	rnaseh2a (ENSKMAG00000019829)	SOX10 (ENSKMAG00000019870)	KCNJ4 (ENSKMAG00000019890)	ENSKMAG00000019899	ENSKMAG00000019930	ENSKMAG00000019985	zgc:158803 (ENSKMAG00000019994)
Cyprinodontoidei	ANCESTRAL SPECIES	15	ENSGT00390000000053.a	ENSGT00390000004368	ENSGT00940000157552.s.a	ENSGT00940000164506.b.a	ENSGT00530000063926.b	ENSGT00950000182916.a.b.a.a.a.b.a.a	ENSGT00940000163721	ENSGT00390000017673.b.k	ENSGT00390000012436.h	ENSGT00940000165343.c.a	ENSGT00940000166140	ENSGT00950000182944.A.b.d	ENSGT00940000157140.b.b.a	ENSGT00470000042444 #30	ENSGT00940000161143 #29	ENSGT01050000244887.A.a.a.a.i #22	ENSGT00940000159543 #23	ENSGT00940000165948	ENSGT00940000159801.B #19	ENSGT00940000159089 #18	ENSGT00940000154819.a.b.c.b.d	ENSGT00940000156887.b #7	ENSGT00530000063000.a.a.b.j #21	ENSGT00940000157700.c	ENSGT00390000010768	ENSGT00940000158046.a.b	ENSGT01030000234586.A.b.a	ENSGT00650000094757	ENSGT00940000157340.k.a	ENSGT00390000017489.b	ENSGT00950000183213.a.a.a
Poeciliinae	ANCESTRAL SPECIES	9	ENSGT00390000000053.a	ENSGT00390000004368	ENSGT00940000157552.s.a	ENSGT00940000164506.b.a	ENSGT00530000063926.b	ENSGT00950000182916.a.b.a.a.a.b.a.a	ENSGT00940000163721	ENSGT00390000017673.b.k	ENSGT00390000012436.h	ENSGT00940000165343.c.a	ENSGT00940000166140	ENSGT00950000182944.A.b.d	ENSGT00940000157140.b.b.a	ENSGT00470000042444 #30	ENSGT00940000161143 #29	ENSGT01050000244887.A.a.a.a.i #22	ENSGT00940000159543 #23	ENSGT00940000165948	ENSGT00940000159801.B #19	ENSGT00940000159089 #18	ENSGT00940000154819.a.b.c.b.d	ENSGT00940000156887.b #7	ENSGT00530000063000.a.a.b.j #21	ENSGT00940000157700.c	ENSGT00390000010768	ENSGT00940000158046.a.b	ENSGT01030000234586.A.b.a	ENSGT00650000094757	ENSGT00940000157340.k.a	ENSGT00390000017489.b	ENSGT00950000183213.a.a.a
Poecilia	ANCESTRAL SPECIES	6	ENSGT00390000000053.a	ENSGT00390000004368	ENSGT00940000157552.s.a	ENSGT00940000164506.b.a	ENSGT00530000063926.b	ENSGT00950000182916.a.b.a.a.a.b.a.a	ENSGT00940000163721	ENSGT00390000017673.b.k	ENSGT00940000165343.d	ENSGT00940000165343.c.a	ENSGT00940000166140	ENSGT00950000182944.A.b.d	ENSGT00940000157140.b.b.a	ENSGT00470000042444 #30	ENSGT00940000161143 #29	ENSGT01050000244887.A.a.a.a.i #22	ENSGT00940000159543 #23	ENSGT00940000165948	ENSGT00940000159801.B #19	ENSGT00940000159089 #18	ENSGT00940000154819.a.b.c.b.d	ENSGT00940000156887.b #7	ENSGT00530000063000.a.a.b.j #21	ENSGT00940000157700.c	ENSGT00390000010768	ENSGT00940000158046.a.b	ENSGT01030000234586.A.b.a	ENSGT00650000094757	ENSGT00940000157340.k.a	ENSGT00390000017489.b	ENSGT00950000183213.a.a.a
NAME_6	ANCESTRAL SPECIES	47	ENSGT00390000000053.a	ENSGT00390000004368	ENSGT00940000157552.s.a	ENSGT00940000164506.b.a	ENSGT00530000063926.b	ENSGT00950000182916.a.b.a.a.a.b.a.a	ENSGT00940000163721	ENSGT00390000017673.b.k	ENSGT00940000165343.d	ENSGT00940000165343.c.a	ENSGT00940000166140	ENSGT00950000182944.A.b.d	ENSGT00940000157140.b.b.a	ENSGT00470000042444 #30	ENSGT00940000161143 #29	ENSGT01050000244887.A.a.a.a.i #22	ENSGT00940000159543 #23	ENSGT00940000165948	ENSGT00940000159801.B #19	ENSGT00940000159089 #18	ENSGT00940000154819.a.b.c.b.d	ENSGT00940000156887.b #7	ENSGT00530000063000.a.a.b.j #21	ENSGT00940000157700.c	ENSGT00390000010768	ENSGT00940000158046.a.b	ENSGT01030000234586.A.b.a	ENSGT00650000094757	ENSGT00940000157340.k.a	ENSGT00390000017489.b	ENSGT00950000183213.a.a.a
Amazon molly	MODERN SPECIES	295	PLPPR2 (ENSPFOG00000013696)	elof1 (ENSPFOG00000023035)	pld6 (ENSPFOG00000013689)	RAB3D (ENSPFOG00000013657)	tspan34 (ENSPFOG00000013561)	dand5 (ENSPFOG00000013550)	NFIX (ENSPFOG00000013453)	rnf11a (ENSPFOG00000013436)	HMOX1 (ENSPFOG00000013418)	ENSPFOG00000022531	ENSPFOG00000013403	ENSPFOG00000013394	ENSPFOG00000013392	ENSPFOG00000023655	fdx2 (ENSPFOG00000013381) #29	s1pr5b (ENSPFOG00000020141) #22	keap1b (ENSPFOG00000013318) #23	ENSPFOG00000013303	CDKN2D (ENSPFOG00000013301) #19	ap1m2 (ENSPFOG00000023907) #18	ENSPFOG00000013091	SMARCA4 (ENSPFOG00000012930) #7	atg4da (ENSPFOG00000012852) #21	MAST1 (ENSPFOG00000012690)	rnaseh2a (ENSPFOG00000012627)	ENSPFOG00000012609	ENSPFOG00000012599	ENSPFOG00000021920	ENSPFOG00000012509	smdt1b (ENSPFOG00000012495)	zgc:158803 (ENSPFOG00000012437)
Sailfin molly	MODERN SPECIES	4	PLPPR2 (ENSPLAG00000018007)	elof1 (ENSPLAG00000018024)	pld6 (ENSPLAG00000018026)	RAB3D (ENSPLAG00000018052)	tspan34 (ENSPLAG00000018292)	dand5 (ENSPLAG00000018314)	NFIX (ENSPLAG00000018337)	rnf11a (ENSPLAG00000018356)	HMOX1 (ENSPLAG00000018364)	ENSPLAG00000018376	ENSPLAG00000018384	ENSPLAG00000018392	ENSPLAG00000018396	ENSPLAG00000018403 #30	fdx2 (ENSPLAG00000018407) #29	s1pr5b (ENSPLAG00000018413) #22	keap1b (ENSPLAG00000018426) #23	ENSPLAG00000018432	CDKN2D (ENSPLAG00000018442) #19	ap1m2 (ENSPLAG00000018476) #18	ENSPLAG00000018526	SMARCA4 (ENSPLAG00000018616) #7	atg4da (ENSPLAG00000018657) #21	MAST1 (ENSPLAG00000018711)	rnaseh2a (ENSPLAG00000018723)
Guppy	MODERN SPECIES	439	PLPPR2 (ENSPREG00000013258)	elof1 (ENSPREG00000013288)	pld6 (ENSPREG00000013297)	RAB3D (ENSPREG00000013308)	tspan34 (ENSPREG00000013321)	dand5 (ENSPREG00000013337)	NFIX (ENSPREG00000013386)	rnf11a (ENSPREG00000013482)	HMOX1 (ENSPREG00000013545)	ENSPREG00000013750	ENSPREG00000013765	ENSPREG00000013771	ENSPREG00000013775	ENSPREG00000013782 #30	fdx2 (ENSPREG00000013790) #29	s1pr5b (ENSPREG00000013844) #22	keap1b (ENSPREG00000013858) #23	ENSPREG00000013872	CDKN2D (ENSPREG00000013882) #19	ap1m2 (ENSPREG00000013898) #18	ENSPREG00000014073	SMARCA4 (ENSPREG00000014823) #7	atg4da (ENSPREG00000014939) #21	MAST1 (ENSPREG00000014975)	rnaseh2a (ENSPREG00000015015)	ENSPREG00000015036	ENSPREG00000015145	ENSPREG00000015510	smdt1b (ENSPREG00000015520)	zgc:158803 (ENSPREG00000015528)	ENSPREG00000015549
Platyfish	MODERN SPECIES	19	elof1 (ENSXMAG00000023395)	pld6 (ENSXMAG00000017375)	ENSXMAG00000017368	tspan34 (ENSXMAG00000024059)	dand5 (ENSXMAG00000017343)	NFIX (ENSXMAG00000007238)	rnf11a (ENSXMAG00000022184)	HMOX1 (ENSXMAG00000007220)	ENSXMAG00000025662	ENSXMAG00000025089	ENSXMAG00000027376	ENSXMAG00000026103	ENSXMAG00000019816	ENSXMAG00000020994 #30	fdx2 (ENSXMAG00000005511) #29	s1pr5b (ENSXMAG00000019815) #22	keap1b (ENSXMAG00000021448) #23	ENSXMAG00000007179	CDKN2D (ENSXMAG00000022409) #19	ap1m2 (ENSXMAG00000007151) #18	ENSXMAG00000007105	SMARCA4 (ENSXMAG00000007030) #7	atg4da (ENSXMAG00000007016) #21	MAST1 (ENSXMAG00000006970)	ENSXMAG00000027436	rnaseh2a (ENSXMAG00000006953)	ENSXMAG00000021473	ENSXMAG00000006940	ENSXMAG00000006923	ENSXMAG00000022941	zgc:158803 (ENSXMAG00000006903)
NAME_4	ANCESTRAL SPECIES	73	ENSGT00940000158145.a	ENSGT00390000004368	ENSGT00940000157552.s.a	ENSGT00940000164506.b.a.d	ENSGT00530000063926.b	ENSGT00950000182916.a.b.a.a.a.b.a.a	ENSGT00940000163721	ENSGT00390000017673.b.k	ENSGT00940000165343.d	ENSGT00940000165343.c.a	ENSGT00940000166140	ENSGT00950000182944.A.b.d	ENSGT00940000157140.b.b.a	ENSGT00470000042444 #30	ENSGT00940000161143 #29	ENSGT01050000244887.A.a.a.a.i #22	ENSGT00940000159543 #23	ENSGT00940000165948	ENSGT00940000159801.B #19	ENSGT00940000159089 #18	ENSGT00940000154819.a.b.c.b.d	ENSGT00940000156887.b #7	ENSGT00530000063000.a.a.b.j #21	ENSGT00940000157700.c	ENSGT00390000010768	ENSGT00940000158046.a.b	ENSGT01030000234586.A.b.a	ENSGT00940000157340.k.a	ENSGT00390000017489.b	ENSGT00950000183213.a.a.a	ENSGT00390000017504
Sheepshead minnow	MODERN SPECIES	1076										add1 (ENSCVAG00000019337)	nop14 (ENSCVAG00000019406)	ENSCVAG00000019418	SNCA (ENSCVAG00000019542)	klf4 (ENSCVAG00000019555)	ENSCVAG00000019565	s1pr5b (ENSCVAG00000019571) #22	keap1b (ENSCVAG00000019600) #23	ENSCVAG00000019605	CDKN2D (ENSCVAG00000019607) #19	AP1M2 (ENSCVAG00000019645) #18
Mummichog	MODERN SPECIES	399												ENSFHEG00000008060	ENSFHEG00000008045 #30	fdx2 (ENSFHEG00000008018) #29	ENSFHEG00000008010	s1pr5b (ENSFHEG00000008004) #22	keap1b (ENSFHEG00000007996) #23	ENSFHEG00000007992	CDKN2D (ENSFHEG00000007983) #19	ap1m2 (ENSFHEG00000007972) #18	ENSFHEG00000007933	ENSFHEG00000007919	SMARCA4 (ENSFHEG00000007902) #7	atg4da (ENSFHEG00000007752) #21	MAST1 (ENSFHEG00000007742)	rnaseh2a (ENSFHEG00000007682)	SOX10 (ENSFHEG00000007675)	KCNJ4 (ENSFHEG00000007650)	ENSFHEG00000007638	smdt1b (ENSFHEG00000007632)	zgc:158803 (ENSFHEG00000007623)
Oryzias	ANCESTRAL SPECIES	15	ENSGT00940000158145.a	ENSGT00390000000053.a	ENSGT00390000004368	ENSGT00940000157552.s.a	ENSGT00940000164506.b.a	ENSGT00530000063926.b	ENSGT00950000182916.a.b.a.a.a.b.a.a	ENSGT00940000163721	ENSGT00390000017673.b.k	ENSGT00390000012436.h	ENSGT00940000165343.c.a	ENSGT00940000166140	ENSGT00940000157140.b.b.a	ENSGT00470000042444 #30	ENSGT00940000161143 #29	ENSGT01050000244887.A.a.a.a.i #22	ENSGT00940000159543 #23	ENSGT00940000165948	ENSGT00940000159801.B #19	ENSGT00940000159089 #18	ENSGT00940000154819.a.b.c.b.d	ENSGT00940000156887.b #7	ENSGT00530000063000.a.a.b.j #21	ENSGT00940000157700.c	ENSGT00390000010768	ENSGT00940000158046.a.b	ENSGT01030000234586.A.b.a	ENSGT00940000157340.k.a	ENSGT00390000017489.b	ENSGT00950000183213.a.a.a	ENSGT00390000017504
Oryzias_a	ANCESTRAL SPECIES	23	ENSGT00940000158145.a	ENSGT00390000000053.a	ENSGT00390000004368	ENSGT00940000157552.s.a	ENSGT00940000164506.b.a	ENSGT00530000063926.b	ENSGT00950000182916.a.b.a.a.a.b.a.a	ENSGT00940000163721	ENSGT00390000017673.b.k	ENSGT00390000012436.h	ENSGT00940000165343.c.a	ENSGT00940000166140	ENSGT00940000157140.b.b.a	ENSGT00470000042444 #30	ENSGT00940000161143 #29	ENSGT01050000244887.A.a.a.a.i #22	ENSGT00940000159543 #23	ENSGT00940000165948	ENSGT00940000159801.B #19	ENSGT00940000159089 #18	ENSGT00940000154819.a.b.c.b.d	ENSGT00940000156887.b #7	ENSGT00530000063000.a.a.b.j #21	ENSGT00940000157700.c	ENSGT00390000010768	ENSGT00940000158046.a.b	ENSGT01030000234586.A.b.a	ENSGT00940000157340.k.a	ENSGT00390000017489.b	ENSGT00940000165833	ENSGT00390000017504
Japanese Medaka HdrR	MODERN SPECIES		ENSORLG00000003578	ENSORLG00000003588	pld6 (ENSORLG00000023663)	ENSORLG00000003625	tspan34 (ENSORLG00000003680)	dand5 (ENSORLG00000003690)	NFIX (ENSORLG00000003734)	rnf11a (ENSORLG00000022986)	ENSORLG00000003753	ENSORLG00000028289	ENSORLG00000003769	ENSORLG00000003776	ENSORLG00000003779	ENSORLG00000024901 #30	fdx2 (ENSORLG00000029397) #29	s1pr5b (ENSORLG00000003793) #22	keap1b (ENSORLG00000003823) #23	ENSORLG00000027541	ENSORLG00000003831	CDKN2D (ENSORLG00000003842) #19	ap1m2 (ENSORLG00000003846) #18	ENSORLG00000003886	ENSORLG00000003955 #7	atg4da (ENSORLG00000004021) #21	ENSORLG00000022445	rnaseh2a (ENSORLG00000004042)	ENSORLG00000024031	ENSORLG00000004067	ENSORLG00000004082	smdt1b (ENSORLG00000004088)	ENSORLG00000004110
Chinese medaka	MODERN SPECIES	272	elof1 (ENSOSIG00000000250)	pld6 (ENSOSIG00000000247)	ENSOSIG00000000243	tspan34 (ENSOSIG00000000238)	dand5 (ENSOSIG00000000234)	NFIX (ENSOSIG00000000182)	rnf11a (ENSOSIG00000000109)	HMOX1 (ENSOSIG00000000100)	ENSOSIG00000000088	ENSOSIG00000022870	ENSOSIG00000022869	ENSOSIG00000022867	ENSOSIG00000022863	ENSOSIG00000022860 #30	fdx2 (ENSOSIG00000022858) #29	s1pr5b (ENSOSIG00000022856) #22	keap1b (ENSOSIG00000022855) #23	ENSOSIG00000022853	ENSOSIG00000022851	CDKN2D (ENSOSIG00000022850) #19	AP1M2 (ENSOSIG00000022846) #18	ENSOSIG00000022637	SMARCA4 (ENSOSIG00000022566) #7	atg4da (ENSOSIG00000022514) #21	MAST1 (ENSOSIG00000021971)	rnaseh2a (ENSOSIG00000021790)	SOX10 (ENSOSIG00000021784)	ENSOSIG00000021766	ENSOSIG00000021756	ENSOSIG00000021753	ENSOSIG00000021748
Oryzias_b	ANCESTRAL SPECIES	29	ENSGT00940000173081	ENSGT00940000158145.a	ENSGT00390000000053.a	ENSGT00390000004368	ENSGT00940000157552.s.a	ENSGT00940000164506.b.a	ENSGT00530000063926.b	ENSGT00950000182916.a.b.a.a.a.b.a.a	ENSGT00940000163721	ENSGT00390000017673.b.k	ENSGT00940000165343.c.a	ENSGT00940000166140	ENSGT00940000157140.b.b.a	ENSGT00470000042444 #30	ENSGT00940000161143 #29	ENSGT01050000244887.A.a.a.a.i #22	ENSGT00940000159543 #23	ENSGT00940000165948	ENSGT00940000159801.B #19	ENSGT00940000159089 #18	ENSGT00940000154819.a.b.c.b.d	ENSGT00940000156887.b #7	ENSGT00530000063000.a.a.b.j #21	ENSGT00940000157700.c	ENSGT00390000010768	ENSGT00940000158046.a.b	ENSGT01030000234586.A.b.a	ENSGT00940000157340.k.a	ENSGT00390000017489.b	ENSGT00950000183213.a.a.a	ENSGT00390000017504
Javanese ricefish	MODERN SPECIES		ENSOJAG00000021989	ENSOJAG00000021984	elof1 (ENSOJAG00000021972)	pld6 (ENSOJAG00000021963)	RAB3D (ENSOJAG00000021948)	tspan34 (ENSOJAG00000021920)	dand5 (ENSOJAG00000021902)	NFIX (ENSOJAG00000021867)	rnf11a (ENSOJAG00000021842)	HMOX1 (ENSOJAG00000021814)	ENSOJAG00000021807	ENSOJAG00000021805	ENSOJAG00000021797	ENSOJAG00000021795 #30	fdx2 (ENSOJAG00000021790) #29	s1pr5b (ENSOJAG00000021789) #22	keap1b (ENSOJAG00000021777) #23	ENSOJAG00000021769	CDKN2D (ENSOJAG00000021763) #19	ap1m2 (ENSOJAG00000021653) #18	ENSOJAG00000020541	atg4da (ENSOJAG00000020110) #21	MAST1 (ENSOJAG00000018779)	rnaseh2a (ENSOJAG00000018576)	SOX10 (ENSOJAG00000018558)	ENSOJAG00000018551	ENSOJAG00000018533	smdt1b (ENSOJAG00000018524)	zgc:158803 (ENSOJAG00000018496)	ENSOJAG00000018485	mb (ENSOJAG00000018470)
Ovalentaria_B	ANCESTRAL SPECIES	4	ENSGT00390000004368	ENSGT00940000157552.s.a	ENSGT00940000164506.b.a	ENSGT00530000063926.b	ENSGT00950000182916.a.b.a.a.a.b.a.a	ENSGT00940000163721	ENSGT00390000017673.b.k	ENSGT00940000165343.d	ENSGT00940000181262	ENSGT00940000165343.c.a	ENSGT00940000166140	ENSGT00950000182944.A.b.d	ENSGT00940000157140.b.b.a	ENSGT00470000042444 #30	ENSGT00940000161143 #29	ENSGT01050000244887.A.a.a.a.i #22	ENSGT00940000159543 #23	ENSGT00940000165948	ENSGT00940000159801.B #19	ENSGT00940000159089 #18	ENSGT00940000154819.a.b.c.b.d	ENSGT00940000156887.b #7	ENSGT00530000063000.a.a.b.j #21	ENSGT00940000157700.c	ENSGT00390000010768	ENSGT00940000158046.a.b	ENSGT01030000234586.A.b.a	ENSGT00940000157340.k.a	ENSGT00390000017489.b	ENSGT00950000183213.a.a.a	ENSGT00390000017504
Cichlidae	ANCESTRAL SPECIES	3	ENSGT00940000158145.a	ENSGT00390000000053.a	ENSGT00390000004368	ENSGT00940000157552.s.a	ENSGT00940000164506.b.a	ENSGT00530000063926.b	ENSGT00950000182916.a.b.a.a.a.b.a.a	ENSGT00940000163721	ENSGT00390000017673.b.k	ENSGT00940000165343.c.a	ENSGT00940000166140	ENSGT00950000182944.A.b.d	ENSGT00940000157140.b.b.a	ENSGT00470000042444 #30	ENSGT00940000161143 #29	ENSGT01050000244887.A.a.a.a.i #22	ENSGT00940000159543 #23	ENSGT00940000165948	ENSGT00940000159801.B #19	ENSGT00940000159089 #18	ENSGT00940000154819.a.b.c.b.c.a	ENSGT00940000154819.a.b.c.b.c.b	ENSGT00940000156887.b #7	ENSGT00530000063000.a.a.b.j #21	ENSGT00940000157700.c	ENSGT00390000010768	ENSGT00940000158046.a.b	ENSGT01030000234586.A.b.a	ENSGT00940000157340.k.a	ENSGT00390000017489.b	ENSGT00950000183213.a.a.a
Pseudocrenilabrinae	ANCESTRAL SPECIES	3	ENSGT00940000158145.a	ENSGT00390000000053.a	ENSGT00390000004368	ENSGT00940000157552.s.a	ENSGT00940000164506.b.a	ENSGT00530000063926.b	ENSGT00950000182916.a.b.a.a.a.b.a.a	ENSGT00940000163721	ENSGT00390000017673.b.k	ENSGT00940000165343.c.a	ENSGT00940000166140	ENSGT00950000182944.A.b.d.f.a	ENSGT00940000157140.b.b.a	ENSGT00470000042444 #30	ENSGT00940000161143 #29	ENSGT01050000244887.A.a.a.a.i #22	ENSGT00940000159543 #23	ENSGT00940000165948	ENSGT00940000159801.B #19	ENSGT00940000159089 #18	ENSGT00940000154819.a.b.c.b.c.a.a	ENSGT00940000154819.a.b.c.b.c.b	ENSGT00940000156887.b #7	ENSGT00530000063000.a.a.b.j #21	ENSGT00940000157700.c	ENSGT00390000010768	ENSGT00940000158046.a.b	ENSGT01030000234586.A.b.a	ENSGT00940000157340.k.a	ENSGT00390000017489.b	ENSGT00950000183213.a.a.a
Pseudocrenilabrinae_A	ANCESTRAL SPECIES	5	ENSGT00940000158145.a	ENSGT00390000000053.a	ENSGT00390000004368	ENSGT00940000157552.s.a	ENSGT00940000164506.b.a	ENSGT00530000063926.b	ENSGT00950000182916.a.b.a.a.a.b.a.a	ENSGT00940000163721	ENSGT00390000017673.b.k	ENSGT00940000165343.c.a	ENSGT00940000166140	ENSGT00950000182944.A.b.d.f.a	ENSGT00940000157140.b.b.a	ENSGT00470000042444 #30	ENSGT00940000161143 #29	ENSGT01050000244887.A.a.a.a.i #22	ENSGT00940000159543 #23	ENSGT00940000165948	ENSGT00940000159801.B #19	ENSGT00940000159089 #18	ENSGT00940000154819.a.b.c.b.c.a.a	ENSGT00940000154819.a.b.c.b.c.b	ENSGT00940000156887.b #7	ENSGT00530000063000.a.a.b.j #21	ENSGT00940000157700.c	ENSGT00390000010768	ENSGT00940000158046.a.b	ENSGT01030000234586.A.b.a	ENSGT00940000157340.k.a	ENSGT00390000017489.b	ENSGT00950000183213.a.a.a
Haplochromini	ANCESTRAL SPECIES	3	ENSGT00390000000053.a	ENSGT00390000004368	ENSGT00940000157552.s.a	ENSGT00940000164506.b.a	ENSGT00530000063926.b	ENSGT00950000182916.a.b.a.a.a.b.a.a	ENSGT00940000163721	ENSGT00390000017673.b.k	ENSGT00940000165343.c.a	ENSGT00940000166140	ENSGT00950000182944.A.b.d.f.b	ENSGT00950000182944.A.b.d.f.a	ENSGT00940000157140.b.b.a	ENSGT00470000042444 #30	ENSGT00940000161143 #29	ENSGT01050000244887.A.a.a.a.i #22	ENSGT00940000159543 #23	ENSGT00940000165948	ENSGT00940000159801.B #19	ENSGT00940000159089 #18	ENSGT00940000154819.a.b.c.b.c.a.a	ENSGT00940000156887.b #7	ENSGT00530000063000.a.a.b.j #21	ENSGT00940000157700.c	ENSGT00390000010768	ENSGT00940000158046.a.b	ENSGT01030000234586.A.b.a	ENSGT00940000157340.k.a	ENSGT00390000017489.b	ENSGT00950000183213.a.a.a	ENSGT00390000017504
Haplochromini_A	ANCESTRAL SPECIES	2	ENSGT00390000000053.a	ENSGT00390000004368	ENSGT00940000157552.s.a	ENSGT00940000164506.b.a	ENSGT00530000063926.b	ENSGT00950000182916.a.b.a.a.a.b.a.a	ENSGT00940000163721	ENSGT00390000017673.b.k	ENSGT00940000165343.c.a	ENSGT00940000166140	ENSGT00950000182944.A.b.d.f.b	ENSGT00950000182944.A.b.d.f.a	ENSGT00940000157140.b.b.a	ENSGT00470000042444 #30	ENSGT00940000161143 #29	ENSGT01050000244887.A.a.a.a.i #22	ENSGT00940000159543 #23	ENSGT00940000165948	ENSGT00940000159801.B #19	ENSGT00940000159089 #18	ENSGT00940000154819.a.b.c.b.c.a.a	ENSGT00940000156887.b #7	ENSGT00530000063000.a.a.b.j #21	ENSGT00940000157700.c	ENSGT00390000010768	ENSGT00940000158046.a.b	ENSGT01030000234586.A.b.a	ENSGT00940000157340.k.a	ENSGT00390000017489.b	ENSGT00950000183213.a.a.a	ENSGT00390000017504
P. nyererei	MODERN SPECIES	643												ENSPNYG00000024017	ENSPNYG00000024016	zglp1 (ENSPNYG00000024014) #30	fdx2 (ENSPNYG00000024013) #29	s1pr5b (ENSPNYG00000024012) #22	keap1b (ENSPNYG00000024008) #23	ENSPNYG00000024006	CDKN2D (ENSPNYG00000024004) #19	ap1m2 (ENSPNYG00000024003) #18	ENSPNYG00000024002	ENSPNYG00000024000	SMARCA4 (ENSPNYG00000023995) #7	atg4da (ENSPNYG00000023991) #21	MAST1 (ENSPNYG00000023989)	ENSPNYG00000023988	ENSPNYG00000023987	rnaseh2a (ENSPNYG00000023986)	ENSPNYG00000023985	KCNJ4 (ENSPNYG00000023978)	smdt1b (ENSPNYG00000023975)
Haplochromini_B	ANCESTRAL SPECIES	8	ENSGT00940000157552.s.a	ENSGT00940000164506.b.a	ENSGT00530000063926.b	ENSGT00950000182916.a.b.a.a.a.b.b.a	ENSGT00950000182916.a.b.a.a.a.b.a.a	ENSGT00940000163721	ENSGT00390000017673.b.k	ENSGT00940000165343.c.a	ENSGT00940000166140	ENSGT00950000182944.A.b.d.f.b	ENSGT00950000182944.A.b.d.e	ENSGT00950000182944.A.b.d.f.a	ENSGT00940000157140.b.b.a	ENSGT00470000042444 #30	ENSGT00940000161143 #29	ENSGT01050000244887.A.a.a.a.i #22	ENSGT00940000159543 #23	ENSGT00940000165948	ENSGT00940000159801.B #19	ENSGT00940000159089 #18	ENSGT00940000154819.a.b.c.b.c.a.a	ENSGT00940000177737	ENSGT00940000154819.a.b.c.b.c.a.b	ENSGT00940000156887.b #7	ENSGT00530000063000.a.a.b.j #21	ENSGT00940000157700.c	ENSGT00390000010768	ENSGT00940000158046.a.b	ENSGT01030000234586.A.b.a	ENSGT00940000157340.k.a	ENSGT00390000017489.b
Eastern happy	MODERN SPECIES	18	pld6 (ENSACLG00000007544)	RAB3D (ENSACLG00000007553)	tspan34 (ENSACLG00000007580)	dand5 (ENSACLG00000007596)	NFIX (ENSACLG00000007600)	rnf11a (ENSACLG00000007714)	HMOX1 (ENSACLG00000007729)	ENSACLG00000007737	ENSACLG00000007748	NEU3 (ENSACLG00000007753)	NEU3 (ENSACLG00000007762)	ENSACLG00000007765	ENSACLG00000007772	ENSACLG00000007782 #30	fdx2 (ENSACLG00000007805) #29	s1pr5b (ENSACLG00000007818) #22	keap1b (ENSACLG00000007822) #23	ENSACLG00000007845	CDKN2D (ENSACLG00000007877) #19	ap1m2 (ENSACLG00000007855) #18	ENSACLG00000007886	ENSACLG00000007950	ENSACLG00000008000	SMARCA4 (ENSACLG00000008638) #7	atg4da (ENSACLG00000008714) #21	MAST1 (ENSACLG00000009080)	ENSACLG00000009128	rnaseh2a (ENSACLG00000009169)	ENSACLG00000009200	KCNJ4 (ENSACLG00000009229)	ENSACLG00000009236
Zebra mbuna	MODERN SPECIES	1109	ENSMZEG00005023886	PLPPR2 (ENSMZEG00005023885)	elof1 (ENSMZEG00005023883)	pld6 (ENSMZEG00005023882)	RAB3D (ENSMZEG00005023881)	tspan34 (ENSMZEG00005023880)	dand5 (ENSMZEG00005023879)	NFIX (ENSMZEG00005023878)	ENSMZEG00005023877	NEU3 (ENSMZEG00005023876)	NEU3 (ENSMZEG00005023875)	ENSMZEG00005023874	ENSMZEG00005023873	ENSMZEG00005023872 #30	fdx2 (ENSMZEG00005023871) #29	s1pr5b (ENSMZEG00005023870) #22	keap1b (ENSMZEG00005023869) #23	ENSMZEG00005023868	CDKN2D (ENSMZEG00005023867) #19	ap1m2 (ENSMZEG00005023866) #18	ENSMZEG00005023865	ENSMZEG00005023864	ENSMZEG00005023863	ENSMZEG00005023862	SMARCA4 (ENSMZEG00005023861) #7	atg4da (ENSMZEG00005023860) #21	ENSMZEG00005023859	ENSMZEG00005023858	rnaseh2a (ENSMZEG00005023857)	ENSMZEG00005023856	KCNJ4 (ENSMZEG00005023855)
Burton s mouthbrooder	MODERN SPECIES	734												ENSHBUG00000007502	ENSHBUG00000007027	ENSHBUG00000007015 #30	fdx2 (ENSHBUG00000007004) #29	s1pr5b (ENSHBUG00000006993) #22	keap1b (ENSHBUG00000006989) #23	ENSHBUG00000006982	CDKN2D (ENSHBUG00000006917) #19	ap1m2 (ENSHBUG00000006969) #18	ENSHBUG00000006790	ENSHBUG00000005484	ENSHBUG00000005468	SMARCA4 (ENSHBUG00000005447) #7	atg4da (ENSHBUG00000005336) #21	MAST1 (ENSHBUG00000005318)	ENSHBUG00000005303	rnaseh2a (ENSHBUG00000005267)	ENSHBUG00000005242	KCNJ4 (ENSHBUG00000005222)	ENSHBUG00000005215
Lyretail cichlid	MODERN SPECIES	301	ENSNBRG00000019508	elof1 (ENSNBRG00000019489)	pld6 (ENSNBRG00000019473)	RAB3D (ENSNBRG00000019454)	tspan34 (ENSNBRG00000019428)	dand5 (ENSNBRG00000019412)	NFIX (ENSNBRG00000019307)	rnf11a (ENSNBRG00000019250)	HMOX1 (ENSNBRG00000019244)	ENSNBRG00000019223	ENSNBRG00000019216	NEU3 (ENSNBRG00000019205)	ENSNBRG00000019197	zglp1 (ENSNBRG00000019171) #30	fdx2 (ENSNBRG00000019149) #29	s1pr5b (ENSNBRG00000019138) #22	keap1b (ENSNBRG00000019129) #23	ENSNBRG00000019117	CDKN2D (ENSNBRG00000019096) #19	ap1m2 (ENSNBRG00000019060) #18	ENSNBRG00000018963	ENSNBRG00000018933	SMARCA4 (ENSNBRG00000018865) #7	atg4da (ENSNBRG00000018815) #21	MAST1 (ENSNBRG00000018757)	rnaseh2a (ENSNBRG00000018731)	ENSNBRG00000018705	KCNJ4 (ENSNBRG00000018518)	smdt1b (ENSNBRG00000018490)	zgc:158803 (ENSNBRG00000018476)	ENSNBRG00000018440
Nile tilapia	MODERN SPECIES	18	pld6 (ENSONIG00000018083)	RAB3D (ENSONIG00000037772)	tspan34 (ENSONIG00000018079)	dand5 (ENSONIG00000018078)	NFIX (ENSONIG00000018077)	rnf11a (ENSONIG00000037073)	HMOX1 (ENSONIG00000018076)	ENSONIG00000018073	ENSONIG00000018071	ENSONIG00000028184	NEU3 (ENSONIG00000018069)	neu3e (ENSONIG00000018070)	ENSONIG00000018068	ENSONIG00000033442 #30	fdx2 (ENSONIG00000018067) #29	s1pr5b (ENSONIG00000021227) #22	keap1b (ENSONIG00000018066) #23	ENSONIG00000018063	CDKN2D (ENSONIG00000032001) #19	ap1m2 (ENSONIG00000018060) #18	ENSONIG00000018056	SMARCA4 (ENSONIG00000018040) #7	atg4da (ENSONIG00000031738) #21	MAST1 (ENSONIG00000018034)	rnaseh2a (ENSONIG00000018033)	ENSONIG00000018032	KCNJ4 (ENSONIG00000018031)	ENSONIG00000018028	smdt1b (ENSONIG00000036008)	zgc:158803 (ENSONIG00000018025)	ENSONIG00000018021
Midas cichlid	MODERN SPECIES	1199	RAB3D (ENSACIG00000003781)	tspan34 (ENSACIG00000003708)	dand5 (ENSACIG00000003692)	NFIX (ENSACIG00000003674)	rnf11a (ENSACIG00000003661)	HMOX1 (ENSACIG00000003536)	ENSACIG00000003529	ENSACIG00000003519	NEU3 (ENSACIG00000003494)	NEU3 (ENSACIG00000003415)	ENSACIG00000003395	NEU3 (ENSACIG00000003385)	ENSACIG00000003377	zglp1 (ENSACIG00000003353) #30	fdx2 (ENSACIG00000003335) #29	s1pr5b (ENSACIG00000003324) #22	keap1b (ENSACIG00000003284) #23	ENSACIG00000003274	CDKN2D (ENSACIG00000003266) #19	ap1m2 (ENSACIG00000003239) #18	ENSACIG00000003155	ENSACIG00000003107	SMARCA4 (ENSACIG00000003035) #7	atg4da (ENSACIG00000003005) #21	MAST1 (ENSACIG00000002693)	rnaseh2a (ENSACIG00000002658)	ENSACIG00000002643	KCNJ4 (ENSACIG00000002474)	smdt1b (ENSACIG00000002454)	zgc:158803 (ENSACIG00000002441)	ENSACIG00000002427
Pomacentridae	ANCESTRAL SPECIES	8	ENSGT00390000000053.a	ENSGT00390000004368	ENSGT00940000157552.s.a	ENSGT00940000164506.b.a	ENSGT00530000063926.b	ENSGT00950000182916.a.b.a.a.a.b.a.a	ENSGT00940000163721	ENSGT00390000017673.b.k	ENSGT00940000181262	ENSGT00940000165343.c.a	ENSGT00940000166140	ENSGT00950000182944.A.b.d	ENSGT00940000157140.b.b.a	ENSGT00470000042444 #30	ENSGT00940000161143 #29	ENSGT01050000244887.A.a.a.a.i #22	ENSGT00940000159543 #23	ENSGT00940000165948	ENSGT00940000159801.B #19	ENSGT00940000159089 #18	ENSGT00940000154819.a.b.c.b.d	ENSGT00940000156887.b #7	ENSGT00530000063000.a.a.b.j #21	ENSGT00940000157700.c	ENSGT00390000010768	ENSGT00940000158046.a.b	ENSGT01030000234586.A.b.a	ENSGT00940000157340.k.a	ENSGT00390000017489.b	ENSGT00950000183213.a.a.a	ENSGT00390000017504
Pomacentridae_A	ANCESTRAL SPECIES		ENSGT00390000000053.a	ENSGT00390000004368	ENSGT00940000157552.s.a	ENSGT00940000164506.b.a	ENSGT00530000063926.b	ENSGT00950000182916.a.b.a.a.a.b.a.a	ENSGT00940000163721	ENSGT00390000017673.b.k	ENSGT00940000181262	ENSGT00940000165343.c.a	ENSGT00940000166140	ENSGT00950000182944.A.b.d	ENSGT00940000157140.b.b.a	ENSGT00470000042444 #30	ENSGT00940000161143 #29	ENSGT01050000244887.A.a.a.a.i #22	ENSGT00940000159543 #23	ENSGT00940000165948	ENSGT00940000159801.B #19	ENSGT00940000159089 #18	ENSGT00940000154819.a.b.c.b.d	ENSGT00940000156887.b #7	ENSGT00530000063000.a.a.b.j #21	ENSGT00940000157700.c	ENSGT00390000010768	ENSGT00940000158046.a.b	ENSGT01030000234586.A.b.a	ENSGT00940000157340.k.a	ENSGT00390000017489.b	ENSGT00950000183213.a.a.a	ENSGT00390000017504
Amphiprion	ANCESTRAL SPECIES		ENSGT00390000004368	ENSGT00940000157552.s.a	ENSGT00940000164506.b.a	ENSGT00530000063926.b	ENSGT00950000182916.a.b.a.a.a.b.b.a	ENSGT00950000182916.a.b.a.a.a.b.a.a	ENSGT00940000163721	ENSGT00390000017673.b.k	ENSGT00940000181262	ENSGT00940000165343.c.a	ENSGT00940000166140	ENSGT00950000182944.A.b.d	ENSGT00940000157140.b.b.a	ENSGT00470000042444 #30	ENSGT00940000161143 #29	ENSGT01050000244887.A.a.a.a.i #22	ENSGT00940000159543 #23	ENSGT00940000165948	ENSGT00940000159801.B #19	ENSGT00940000159089 #18	ENSGT00940000154819.a.b.c.b.d	ENSGT00940000156887.b #7	ENSGT00530000063000.a.a.b.j #21	ENSGT00940000157700.c	ENSGT01090000261423	ENSGT00390000010768	ENSGT00940000158046.a.b	ENSGT01030000234586.A.b.a	ENSGT00940000157340.k.a	ENSGT00390000017489.b	ENSGT00950000183213.a.a.a
Clown anemonefish	MODERN SPECIES	1044													ENSAOCG00000009625	ENSAOCG00000009617 #30	fdx2 (ENSAOCG00000009574) #29	s1pr5b (ENSAOCG00000009535) #22	keap1b (ENSAOCG00000009527) #23	ENSAOCG00000002137	CDKN2D (ENSAOCG00000009517) #19	ap1m2 (ENSAOCG00000009505) #18	ENSAOCG00000009468	SMARCA4 (ENSAOCG00000009450) #7	atg4da (ENSAOCG00000009366) #21	MAST1 (ENSAOCG00000009348)	ENSAOCG00000009261	ENSAOCG00000009239	rnaseh2a (ENSAOCG00000009217)	SOX10 (ENSAOCG00000009184)	ENSAOCG00000009131	ENSAOCG00000009111	smdt1b (ENSAOCG00000009097)
Orange clownfish	MODERN SPECIES	17	elof1 (ENSAPEG00000023438)	pld6 (ENSAPEG00000023430)	RAB3D (ENSAPEG00000023416)	tspan34 (ENSAPEG00000023403)	dand5 (ENSAPEG00000023394)	NFIX (ENSAPEG00000023351)	rnf11a (ENSAPEG00000023334)	HMOX1 (ENSAPEG00000023325)	ENSAPEG00000023313	ENSAPEG00000023300	ENSAPEG00000023267	NEU3 (ENSAPEG00000023257)	ENSAPEG00000023251	ENSAPEG00000023241 #30	fdx2 (ENSAPEG00000023232) #29	s1pr5b (ENSAPEG00000023229) #22	keap1b (ENSAPEG00000023223) #23	ENSAPEG00000023218	CDKN2D (ENSAPEG00000023215) #19	ap1m2 (ENSAPEG00000023204) #18	ENSAPEG00000023188	SMARCA4 (ENSAPEG00000023108) #7	atg4da (ENSAPEG00000023035) #21	ENSAPEG00000023018	MAST1 (ENSAPEG00000022973)	ENSAPEG00000022961	rnaseh2a (ENSAPEG00000022937)	SOX10 (ENSAPEG00000022921)	ENSAPEG00000022889	ENSAPEG00000022874	smdt1b (ENSAPEG00000022857)
Spiny chromis	MODERN SPECIES	88					ENSAPOG00000005041	dand5 (ENSAPOG00000004996)	NFIX (ENSAPOG00000004937)	rnf11a (ENSAPOG00000004817)	HMOX1 (ENSAPOG00000004803)	ENSAPOG00000004786	ENSAPOG00000004766	ENSAPOG00000004745	ENSAPOG00000004728	zglp1 (ENSAPOG00000004713) #30	fdx2 (ENSAPOG00000004692) #29	s1pr5b (ENSAPOG00000004684) #22	keap1b (ENSAPOG00000004671) #23	ENSAPOG00000000116	CDKN2D (ENSAPOG00000004642) #19	ap1m2 (ENSAPOG00000004630) #18	ENSAPOG00000004583	SMARCA4 (ENSAPOG00000004542) #7	atg4da (ENSAPOG00000004393) #21	atg4da (ENSAPOG00000004347) #21	MAST1 (ENSAPOG00000004190)	rnaseh2a (ENSAPOG00000004101)	SOX10 (ENSAPOG00000004067)	ENSAPOG00000004042	ENSAPOG00000004017	smdt1b (ENSAPOG00000003995)	zgc:158803 (ENSAPOG00000003970)
Bicolor damselfish	MODERN SPECIES	239	pld6 (ENSSPAG00000012116)	ENSSPAG00000012133	tspan34 (ENSSPAG00000012150)	dand5 (ENSSPAG00000012165)	NFIX (ENSSPAG00000012179)	rnf11a (ENSSPAG00000012240)	HMOX1 (ENSSPAG00000012255)	ENSSPAG00000012292	ENSSPAG00000012330	NEU3 (ENSSPAG00000012338)	ENSSPAG00000012346	ENSSPAG00000012355	ENSSPAG00000012365	zglp1 (ENSSPAG00000012373) #30	fdx2 (ENSSPAG00000012392) #29	s1pr5b (ENSSPAG00000012405) #22	keap1b (ENSSPAG00000012410) #23	ENSSPAG00000012424	CDKN2D (ENSSPAG00000012438) #19	ap1m2 (ENSSPAG00000012447) #18	ENSSPAG00000012489	SMARCA4 (ENSSPAG00000012533) #7	atg4da (ENSSPAG00000012672) #21	MAST1 (ENSSPAG00000012704)	ENSSPAG00000012759	rnaseh2a (ENSSPAG00000012769)	SOX10 (ENSSPAG00000012804)	ENSSPAG00000012865	ENSSPAG00000013289	ENSSPAG00000013302	zgc:158803 (ENSSPAG00000013318)
Percomorphaceae_C	ANCESTRAL SPECIES	3	ENSGT00390000000053.a	ENSGT00390000004368	ENSGT00940000157552.s.a	ENSGT00940000164506.b.a	ENSGT00530000063926.b	ENSGT00950000182916.a.b.a.a.a.b.a.a	ENSGT00940000163721	ENSGT00390000017673.b.k	ENSGT00390000012436.h	ENSGT00940000165343.c.a	ENSGT00940000166140	ENSGT00950000182944.A.b.d	ENSGT00940000157140.b.b.a	ENSGT00470000042444 #30	ENSGT00940000161143 #29	ENSGT01050000244887.A.a.a.a.i #22	ENSGT00940000159543 #23	ENSGT00940000165948	ENSGT00940000159801.B #19	ENSGT00940000159089 #18	ENSGT00940000177737	ENSGT00940000154819.a.b.c.b.d	ENSGT00940000156887.b #7	ENSGT00530000063000.a.a.b.j #21	ENSGT00940000157700.c	ENSGT00390000010768	ENSGT00940000158046.a.b	ENSGT01030000234586.A.b.a	ENSGT00650000094757	ENSGT00940000157340.k.a	ENSGT00390000017489.b
Percomorphaceae_D	ANCESTRAL SPECIES		ENSGT00390000004368	ENSGT00940000157552.s.a	ENSGT00940000164506.b.a	ENSGT00530000063926.b	ENSGT00950000182916.a.b.a.a.a.b.a.a	ENSGT00940000163721	ENSGT00390000017673.b.k	ENSGT00940000165343.d	ENSGT00940000181262	ENSGT00940000165343.c.a	ENSGT00940000166140	ENSGT00950000182944.A.b.d	ENSGT00940000157140.b.b.a	ENSGT00470000042444 #30	ENSGT00940000161143 #29	ENSGT01050000244887.A.a.a.a.i #22	ENSGT00940000159543 #23	ENSGT00940000165948	ENSGT00940000159801.B #19	ENSGT00940000159089 #18	ENSGT00940000177737	ENSGT00940000154819.a.b.c.b.d	ENSGT00940000156887.b #7	ENSGT00530000063000.a.a.b.j #21	ENSGT00940000157700.c	ENSGT00390000010768	ENSGT00940000158046.a.b	ENSGT01030000234586.A.b.a	ENSGT00940000157340.k.a	ENSGT00390000017489.b	ENSGT00950000183213.a.a.a
Anabantaria	ANCESTRAL SPECIES	1	ENSGT00940000158145.a	ENSGT00390000000053.a	ENSGT00390000004368	ENSGT00940000157552.s.a	ENSGT00940000164506.b.a	ENSGT00530000063926.b	ENSGT00950000182916.a.b.a.a.a.b.a.a	ENSGT00940000163721	ENSGT00390000017673.b.k	ENSGT00940000181262	ENSGT00940000165343.c.a	ENSGT00940000166140	ENSGT00940000157140.b.b.a	ENSGT00470000042444 #30	ENSGT00940000161143 #29	ENSGT01050000244887.A.a.a.a.i #22	ENSGT00940000159543 #23	ENSGT00940000165948	ENSGT00940000159801.B #19	ENSGT00940000159089 #18	ENSGT00940000177737	ENSGT00940000154819.a.b.c.b.d	ENSGT00940000156887.b #7	ENSGT00530000063000.a.a.b.j #21	ENSGT00940000157700.c	ENSGT00390000010768	ENSGT00940000158046.a.b	ENSGT01030000234586.A.b.a	ENSGT00940000157340.k.a	ENSGT00390000017489.b	ENSGT00950000183213.a.a.a
Anabantoidei	ANCESTRAL SPECIES		ENSGT00940000173081	ENSGT00940000158145.a	ENSGT00390000000053.a	ENSGT00390000004368	ENSGT00940000157552.s.a	ENSGT00940000164506.b.a	ENSGT00530000063926.b	ENSGT00950000182916.a.b.a.a.a.b.a.a	ENSGT00940000163721	ENSGT00390000017673.b.k	ENSGT00940000165343.c.a	ENSGT00940000166140	ENSGT00940000157140.b.b.a	ENSGT00470000042444 #30	ENSGT00940000161143 #29	ENSGT01050000244887.A.a.a.a.i #22	ENSGT00940000159543 #23	ENSGT00940000165948	ENSGT00940000159801.B #19	ENSGT00940000159089 #18	ENSGT00940000177737	ENSGT00940000154819.a.b.c.b.d	ENSGT00940000156887.b #7	ENSGT00530000063000.a.a.b.j #21	ENSGT00940000157700.c	ENSGT00390000010768	ENSGT00940000158046.a.b	ENSGT01030000234586.A.b.a	ENSGT00940000157340.k.a	ENSGT00390000017489.b	ENSGT00950000183213.a.a.a
Climbing perch	MODERN SPECIES		ENSATEG00000003237	ENSATEG00000003223	ENSATEG00000029063	ENSATEG00000026771	ENSATEG00000003181	ENSATEG00000003157	ENSATEG00000003118	NFIX (ENSATEG00000003018)	ENSATEG00000002973	ENSATEG00000002962	ENSATEG00000029628	ENSATEG00000002944	ENSATEG00000025191	ENSATEG00000026180 #30	fdx2 (ENSATEG00000002919) #29	s1pr5b (ENSATEG00000002909) #22	keap1b (ENSATEG00000002872) #23	ENSATEG00000002865 #19	ap1m2 (ENSATEG00000002811) #18	ENSATEG00000002793	ENSATEG00000002785	ENSATEG00000001094 #7	ENSATEG00000001031 #21	ENSATEG00000000943	ENSATEG00000000908	ENSATEG00000000870	ENSATEG00000000464	ENSATEG00000000458	ENSATEG00000027300	zgc:158803 (ENSATEG00000000437)	ENSATEG00000000430
Siamese fighting fish	MODERN SPECIES		ENSBSLG00000016386	PLPPR2 (ENSBSLG00000016392)	elof1 (ENSBSLG00000016406)	pld6 (ENSBSLG00000016408)	ENSBSLG00000016412	tspan34 (ENSBSLG00000016418)	dand5 (ENSBSLG00000016422)	NFIX (ENSBSLG00000016432)	rnf11a (ENSBSLG00000004959)	HMOX1 (ENSBSLG00000004992)	ENSBSLG00000005031	ENSBSLG00000005091	ENSBSLG00000005116	ENSBSLG00000005130 #30	fdx2 (ENSBSLG00000005155) #29	s1pr5b (ENSBSLG00000005182) #22	keap1b (ENSBSLG00000005218) #23	ENSBSLG00000005374	CDKN2D (ENSBSLG00000005390) #19	ap1m2 (ENSBSLG00000005447) #18	ENSBSLG00000005904	SMARCA4 (ENSBSLG00000007283) #7	atg4da (ENSBSLG00000007401) #21	ENSBSLG00000007984	rnaseh2a (ENSBSLG00000009501)	ENSBSLG00000009520	KCNJ4 (ENSBSLG00000009531)	ENSBSLG00000009704	smdt1b (ENSBSLG00000009756)	zgc:158803 (ENSBSLG00000009773)	ENSBSLG00000009814
Zig-zag eel	MODERN SPECIES		ENSMAMG00000002329	ENSMAMG00000002383	ENSMAMG00000002390	ENSMAMG00000002400	ENSMAMG00000002427	dand5 (ENSMAMG00000002436)	ENSMAMG00000002467	rnf11a (ENSMAMG00000027180)	ENSMAMG00000002595	ENSMAMG00000027973	ENSMAMG00000027487	ENSMAMG00000002631	ENSMAMG00000002648	ENSMAMG00000025847 #30	fdx2 (ENSMAMG00000002665) #29	s1pr5b (ENSMAMG00000002676) #22	keap1b (ENSMAMG00000002679) #23	ENSMAMG00000002687	ENSMAMG00000025026 #19	ap1m2 (ENSMAMG00000002700) #18	ENSMAMG00000002789	ENSMAMG00000002841 #7	ENSMAMG00000002970 #21	ENSMAMG00000002992	ENSMAMG00000026089	ENSMAMG00000003107	ENSMAMG00000003152	ENSMAMG00000003879	ENSMAMG00000003891	zgc:158803 (ENSMAMG00000003914)	ENSMAMG00000003936
Carangaria	ANCESTRAL SPECIES		ENSGT00940000158145.a	ENSGT00390000000053.a	ENSGT00390000004368	ENSGT00940000157552.s.a	ENSGT00940000164506.b.a	ENSGT00530000063926.b	ENSGT00950000182916.a.b.a.a.a.b.a.a	ENSGT00940000163721	ENSGT00390000017673.b.k	ENSGT00940000165343.c.a	ENSGT00940000166140	ENSGT00950000182944.A.b.d	ENSGT00940000157140.b.b.a	ENSGT00470000042444 #30	ENSGT00940000161143 #29	ENSGT01050000244887.A.a.a.a.i #22	ENSGT00940000159543 #23	ENSGT00940000165948	ENSGT00940000159801.B #19	ENSGT00940000159089 #18	ENSGT00940000154819.a.b.c.b.d	ENSGT00940000156887.b.f #7	ENSGT00530000063000.a.a.b.j #21	ENSGT00940000157700.c	ENSGT00390000010768	ENSGT00940000158046.a.b	ENSGT01030000234586.A.b.a	ENSGT00940000157340.k.a	ENSGT00390000017489.b	ENSGT00950000183213.a.a.a	ENSGT00390000017504
Pleuronectoidei	ANCESTRAL SPECIES	21	ENSGT00390000009016	ENSGT00940000158145.a	ENSGT00390000000053.a	ENSGT00390000004368	ENSGT00940000157552.s.a	ENSGT00940000164506.b.a	ENSGT00530000063926.b	ENSGT00950000182916.a.b.a.a.a.b.a.a	ENSGT00940000163721	ENSGT00390000017673.b.k	ENSGT00940000165343.c.a	ENSGT00940000166140	ENSGT00940000157140.b.b.a	ENSGT00470000042444 #30	ENSGT00940000161143 #29	ENSGT01050000244887.A.a.a.a.i #22	ENSGT00940000159543 #23	ENSGT00940000165948	ENSGT00940000159801.B #19	ENSGT00940000159089 #18	ENSGT00940000154819.a.b.c.b.d	ENSGT00940000156887.b.f #7	ENSGT00530000063000.a.a.b.j #21	ENSGT00940000157700.c	ENSGT00390000010768	ENSGT00940000158046.a.b	ENSGT01030000234586.A.b.a	ENSGT00940000157340.k.a	ENSGT00390000017489.b	ENSGT00950000183213.a.a.a	ENSGT00390000017504
Turbot	MODERN SPECIES	20	ENSSMAG00000014707	ENSSMAG00000014699	ENSSMAG00000027463	ENSSMAG00000014684	ENSSMAG00000014671	ENSSMAG00000014639	dand5 (ENSSMAG00000014617)	ENSSMAG00000014430	rnf11a (ENSSMAG00000014402)	HO-1 (ENSSMAG00000030685)	ENSSMAG00000014359	ENSSMAG00000014349	ENSSMAG00000014340	ENSSMAG00000034429 #30	fdx2 (ENSSMAG00000014312) #29	s1pr5b (ENSSMAG00000014302) #22	ENSSMAG00000014293	ENSSMAG00000030085 #19	ap1m2 (ENSSMAG00000014240) #18	ENSSMAG00000014211	ENSSMAG00000014050 #21	ENSSMAG00000014004	ENSSMAG00000013970	ENSSMAG00000013959	ENSSMAG00000013938	ENSSMAG00000013932	zgc:158803 (ENSSMAG00000013905)	ENSSMAG00000013896	mb (ENSSMAG00000035935)	serhl (ENSSMAG00000013860)	serhl (ENSSMAG00000021742)
Tongue sole	MODERN SPECIES	19	rab11fip4b (ENSCSEG00000013558)	ENSCSEG00000013580	lrrc42 (ENSCSEG00000013583)	ENSCSEG00000013590	PLPPR2 (ENSCSEG00000013598)	elof1 (ENSCSEG00000013606)	pld6 (ENSCSEG00000013610)	ENSCSEG00000013616	dand5 (ENSCSEG00000013627)	NFIX (ENSCSEG00000013646)	rnf11a (ENSCSEG00000013753)	ENSCSEG00000013762	ENSCSEG00000013767	ENSCSEG00000013771 #30	fdx2 (ENSCSEG00000013776) #29	s1pr5b (ENSCSEG00000013780) #22	keap1b (ENSCSEG00000013786) #23	ENSCSEG00000013791	CDKN2D (ENSCSEG00000013798) #19	ap1m2 (ENSCSEG00000013803) #18	DOK7 (ENSCSEG00000013814)	lrpap1 (ENSCSEG00000013834)	adra2c (ENSCSEG00000013863)	hmx1 (ENSCSEG00000013871)	hmx4 (ENSCSEG00000013877)	CPZ (ENSCSEG00000013882)	GPR78 (ENSCSEG00000013891)	htra3a (ENSCSEG00000013897)	pi4k2b (ENSCSEG00000013924)	zgc:195282 (ENSCSEG00000013954)	ENSCSEG00000013967
Carangaria_A	ANCESTRAL SPECIES	14	ENSGT00940000158145.a	ENSGT00390000000053.a	ENSGT00390000004368	ENSGT00940000157552.s.a	ENSGT00940000164506.b.a	ENSGT00530000063926.b	ENSGT00950000182916.a.b.a.a.a.b.a.a	ENSGT00940000163721	ENSGT00390000017673.b.k	ENSGT00940000165343.c.a	ENSGT00940000166140	ENSGT00950000182944.A.b.d	ENSGT00940000157140.b.b.a	ENSGT00470000042444 #30	ENSGT00940000161143 #29	ENSGT01050000244887.A.a.a.a.i #22	ENSGT00940000159543 #23	ENSGT00940000165948	ENSGT00940000159801.B #19	ENSGT00940000159089 #18	ENSGT00940000154819.a.b.c.b.d	ENSGT00940000156887.b.f #7	ENSGT00530000063000.a.a.b.j #21	ENSGT00940000157700.c	ENSGT00390000010768	ENSGT00940000158046.a.b	ENSGT01030000234586.A.b.a	ENSGT00940000157340.k.a	ENSGT00390000017489.b	ENSGT00950000183213.a.a.a	ENSGT00390000017504
Seriola	ANCESTRAL SPECIES	29	ENSGT00390000000053.a	ENSGT00390000004368	ENSGT00940000157552.s.a	ENSGT00940000164506.b.a	ENSGT00530000063926.b	ENSGT00950000182916.a.b.a.a.a.b.a.a	ENSGT00940000163721	ENSGT00390000017673.b.k	ENSGT00940000165343.c.a	ENSGT00940000166140	ENSGT00950000182944.A.b.d.j	ENSGT00950000182944.A.b.d.i	ENSGT00940000157140.b.b.a	ENSGT00470000042444 #30	ENSGT00940000161143 #29	ENSGT01050000244887.A.a.a.a.i #22	ENSGT00940000159543 #23	ENSGT00940000165948	ENSGT00940000159801.B #19	ENSGT00940000159089 #18	ENSGT00940000154819.a.b.c.b.d	ENSGT00940000156887.b.f #7	ENSGT00530000063000.a.a.b.j #21	ENSGT00940000157700.c	ENSGT00390000010768	ENSGT00940000158046.a.b	ENSGT01030000234586.A.b.a	ENSGT00940000157340.k.a	ENSGT00390000017489.b	ENSGT00950000183213.a.a.a	ENSGT00390000017504
Greater amberjack	MODERN SPECIES	214	elof1 (ENSSDUG00000023329)	pld6 (ENSSDUG00000023326)	RAB3D (ENSSDUG00000023322)	tspan34 (ENSSDUG00000023318)	dand5 (ENSSDUG00000023316)	NFIX (ENSSDUG00000023300)	rnf11a (ENSSDUG00000023294)	HMOX1 (ENSSDUG00000023292)	ENSSDUG00000023284	ENSSDUG00000023281	NEU3 (ENSSDUG00000023279)	NEU3 (ENSSDUG00000023278)	ENSSDUG00000023275	ENSSDUG00000023273 #30	fdx2 (ENSSDUG00000023270) #29	s1pr5b (ENSSDUG00000023268) #22	keap1b (ENSSDUG00000023265) #23	ENSSDUG00000023263	CDKN2D (ENSSDUG00000023261) #19	ap1m2 (ENSSDUG00000023256) #18
Yellowtail amberjack	MODERN SPECIES	2982						NFIX (ENSSLDG00000023509)	rnf11a (ENSSLDG00000023520)	HMOX1 (ENSSLDG00000023531)	ENSSLDG00000023542	ENSSLDG00000023552	NEU3 (ENSSLDG00000023560)	NEU3 (ENSSLDG00000023565)	ENSSLDG00000023572	ENSSLDG00000023581 #30	fdx2 (ENSSLDG00000023600) #29	s1pr5b (ENSSLDG00000023617) #22	keap1b (ENSSLDG00000023620) #23	ENSSLDG00000023625	CDKN2D (ENSSLDG00000023627) #19	ap1m2 (ENSSLDG00000023631) #18	ENSSLDG00000023644	SMARCA4 (ENSSLDG00000023663) #7	atg4da (ENSSLDG00000023718) #21	MAST1 (ENSSLDG00000023742)	rnaseh2a (ENSSLDG00000023766)	SOX10 (ENSSLDG00000023781)	ENSSLDG00000023789	ENSSLDG00000023792	smdt1b (ENSSLDG00000023802)	zgc:158803 (ENSSLDG00000023807)	pane1 (ENSSLDG00000023816)
Barramundi perch	MODERN SPECIES	113	tspan34 (ENSLCAG00010025227)	dand5 (ENSLCAG00010025230)	NFIX (ENSLCAG00010025252)	rnf11a (ENSLCAG00010025300)	HMOX1 (ENSLCAG00010025306)	ENSLCAG00010025315	ENSLCAG00010025320	ENSLCAG00010025324	ENSLCAG00010025325	ENSLCAG00010025327	ENSLCAG00010025331	ENSLCAG00010025333	ENSLCAG00010025336	ENSLCAG00010025338 #30	fdx2 (ENSLCAG00010025344) #29	s1pr5b (ENSLCAG00010025347) #22	keap1b (ENSLCAG00010025348) #23	ENSLCAG00010025351	CDKN2D (ENSLCAG00010025359) #19	ap1m2 (ENSLCAG00010025411) #18	ENSLCAG00010025594	SMARCA4 (ENSLCAG00010025736) #7	atg4da (ENSLCAG00010025792) #21	MAST1 (ENSLCAG00010025816)	rnaseh2a (ENSLCAG00010025845)	SOX10 (ENSLCAG00010025851)	ENSLCAG00010025857	ENSLCAG00010025859	smdt1b (ENSLCAG00010025863)	zgc:158803 (ENSLCAG00010025868)	pane1 (ENSLCAG00010025871)
Eupercaria	ANCESTRAL SPECIES	2	ENSGT00940000158145.a	ENSGT00390000000053.a	ENSGT00390000004368	ENSGT00940000157552.s.a	ENSGT00940000164506.b.a	ENSGT00530000063926.b	ENSGT00950000182916.a.b.a.a.a.b.a.a	ENSGT00940000163721	ENSGT00390000017673.b.k	ENSGT00390000012436.h	ENSGT00940000165343.c.a	ENSGT00940000166140	ENSGT00940000157140.b.b.a	ENSGT00470000042444 #30	ENSGT00940000161143 #29	ENSGT01050000244887.A.a.a.a.i #22	ENSGT00940000159543 #23	ENSGT00940000165948	ENSGT00940000159801.B #19	ENSGT00940000159089 #18	ENSGT00940000154819.a.b.c.b.d	ENSGT00940000156887.b #7	ENSGT00530000063000.a.a.b.j #21	ENSGT00940000157700.c	ENSGT00390000010768	ENSGT00940000158046.a.b	ENSGT01030000234586.A.b.a	ENSGT00650000094757	ENSGT00940000157340.k.a	ENSGT00390000017489.b	ENSGT00950000183213.a.a.a
Tetraodontidae	ANCESTRAL SPECIES	44	ENSGT00940000166223.b.b.a.b.b	ENSGT00940000158145.a	ENSGT00390000000053.a	ENSGT00390000004368	ENSGT00940000157552.s.a	ENSGT00940000164506.b.a	ENSGT00530000063926.b	ENSGT00950000182916.a.b.a.a.a.b.a.a	ENSGT00940000163721	ENSGT00390000017673.b.k	ENSGT00940000165343.c.a	ENSGT00940000166140	ENSGT00940000157140.b.b.a	ENSGT00940000175590	ENSGT00940000161143 #29	ENSGT01050000244887.A.a.a.a.i #22	ENSGT00940000159543 #23	ENSGT00940000165948	ENSGT00940000159801.B #19	ENSGT00940000159089 #18	ENSGT00940000154819.a.b.c.b.d	ENSGT00940000156887.b #7	ENSGT00530000063000.a.a.b.j #21	ENSGT00940000157700.c	ENSGT00390000010768	ENSGT00940000158046.a.b	ENSGT01030000234586.A.b.a	ENSGT00940000157340.k.a	ENSGT00390000017489.b	ENSGT00950000183213.a.a.a	ENSGT00390000017504
Tetraodon	MODERN SPECIES	10	ENSTNIG00000012036	ENSTNIG00000000266	PLPPR2 (ENSTNIG00000002644)	elof1 (ENSTNIG00000006072)	pld6 (ENSTNIG00000006073)	ENSTNIG00000006074	tspan34 (ENSTNIG00000000549)	dand5 (ENSTNIG00000006075)	NFIX (ENSTNIG00000003955)	ENSTNIG00000004024	rnf11a (ENSTNIG00000006136)	HMOX1 (ENSTNIG00000006135)	ENSTNIG00000006134	ENSTNIG00000006133	ENSTNIG00000006132	s1pr5b (ENSTNIG00000004542) #22	keap1b (ENSTNIG00000004541) #23	ENSTNIG00000004540	CDKN2D (ENSTNIG00000004539) #19	ap1m2 (ENSTNIG00000004538) #18	ENSTNIG00000004537	SMARCA4 (ENSTNIG00000004536) #7	atg4da (ENSTNIG00000004535) #21	MAST1 (ENSTNIG00000004534)	rnaseh2a (ENSTNIG00000004533)	ENSTNIG00000004532	KCNJ4 (ENSTNIG00000004531)	ENSTNIG00000004530	zgc:158803 (ENSTNIG00000005519)	ENSTNIG00000001651	mb (ENSTNIG00000005518)
Fugu	MODERN SPECIES	8	ENSTRUG00000024735	PLPPR2 (ENSTRUG00000005826)	elof1 (ENSTRUG00000021085)	pld6 (ENSTRUG00000005778)	ENSTRUG00000005632	tspan34 (ENSTRUG00000025232)	charon (ENSTRUG00000005611)	NFIX (ENSTRUG00000005030)	rnf11a (ENSTRUG00000027847)	HMOX1 (ENSTRUG00000021266)	ENSTRUG00000004540	ENSTRUG00000021117	ENSTRUG00000019645	ENSTRUG00000019733	fdx2 (ENSTRUG00000004468) #29	s1pr5b (ENSTRUG00000004396) #22	keap1b (ENSTRUG00000003855) #23	ENSTRUG00000003757	cdkn2D (ENSTRUG00000003739) #19	ap1m2 (ENSTRUG00000003149) #18	ENSTRUG00000033211	ENSTRUG00000002369	atg4da (ENSTRUG00000001314) #21	MAST1 (ENSTRUG00000001299)	rnaseh2a (ENSTRUG00000000049)	Sox10a (ENSTRUG00000033126)	KCNJ4 (ENSTRUG00000027165)	ENSTRUG00000030066	ENSTRUG00000026631	zgc:158803 (ENSTRUG00000000039)	ENSTRUG00000000037
Eupecaria_A	ANCESTRAL SPECIES	3	ENSGT00390000004368	ENSGT00940000157552.s.a	ENSGT00940000164506.b.a	ENSGT00530000063926.b	ENSGT00950000182916.a.b.a.a.a.b.a.a	ENSGT00940000163721	ENSGT00390000017673.b.k	ENSGT00390000012436.h	ENSGT00940000165343.c.a	ENSGT00940000166140	ENSGT00950000182944.A.b.c	ENSGT00950000182944.A.b.d	ENSGT00940000157140.b.b.a	ENSGT00470000042444 #30	ENSGT00940000161143 #29	ENSGT01050000244887.A.a.a.a.i #22	ENSGT00940000159543 #23	ENSGT00940000165948	ENSGT00940000159801.B #19	ENSGT00940000159089 #18	ENSGT00940000154819.a.b.c.b.d	ENSGT00940000156887.b #7	ENSGT00530000063000.a.a.b.j #21	ENSGT00940000157700.c	ENSGT00390000010768	ENSGT00940000158046.a.b	ENSGT01030000234586.A.b.a	ENSGT00650000094757	ENSGT00940000157340.k.a	ENSGT00390000017489.b	ENSGT00950000183213.a.a.a
Ballan wrasse	MODERN SPECIES	287				NFIX (ENSLBEG00000021105)	rnf11a (ENSLBEG00000021032)	HMOX1 (ENSLBEG00000021015)	ENSLBEG00000020993	ENSLBEG00000020977	NEU3 (ENSLBEG00000020961)	NEU3 (ENSLBEG00000020949)	NEU3 (ENSLBEG00000020937)	NEU3 (ENSLBEG00000020919)	ENSLBEG00000020905	ENSLBEG00000020889	fdx2 (ENSLBEG00000020878) #29	s1pr5b (ENSLBEG00000020859) #22	keap1b (ENSLBEG00000020837) #23	ENSLBEG00000020827	CDKN2D (ENSLBEG00000020818) #19	ap1m2 (ENSLBEG00000020783) #18	ENSLBEG00000020752	SMARCA4 (ENSLBEG00000020655) #7	atg4da (ENSLBEG00000020609) #21	MAST1 (ENSLBEG00000020537)	rnaseh2a (ENSLBEG00000020494)	ENSLBEG00000020466	ENSLBEG00000020228	ENSLBEG00000020143	smdt1b (ENSLBEG00000020160)	zgc:158803 (ENSLBEG00000020118)	pane1 (ENSLBEG00000020088)
Eupecaria_B	ANCESTRAL SPECIES	1	ENSGT00390000004368	ENSGT00940000157552.s.a	ENSGT00940000164506.b.a	ENSGT00530000063926.b	ENSGT00950000182916.a.b.a.a.a.b.a.a	ENSGT00940000163721	ENSGT00390000017673.b.k	ENSGT00390000012436.h	ENSGT00940000165343.c.a	ENSGT00940000166140	ENSGT00950000182944.A.b.c	ENSGT00950000182944.A.b.d	ENSGT00940000157140.b.b.a	ENSGT00470000042444 #30	ENSGT00940000161143 #29	ENSGT01050000244887.A.a.a.a.i #22	ENSGT00940000159543 #23	ENSGT00940000165948	ENSGT00940000159801.B #19	ENSGT00940000159089 #18	ENSGT00940000154819.a.b.c.b.d	ENSGT00940000156887.b #7	ENSGT00530000063000.a.a.b.j #21	ENSGT00940000157700.c	ENSGT00390000010768	ENSGT00940000158046.a.b	ENSGT01030000234586.A.b.a	ENSGT00650000094757	ENSGT00940000157340.k.a	ENSGT00390000017489.b	ENSGT00950000183213.a.a.a
Perciformes	ANCESTRAL SPECIES	2	ENSGT00390000000053.a	ENSGT00390000004368	ENSGT00940000157552.s.a	ENSGT00940000164506.b.a	ENSGT00530000063926.b	ENSGT00950000182916.a.b.a.a.a.b.a.a	ENSGT00940000163721	ENSGT00390000017673.b.k	ENSGT00390000012436.h	ENSGT00940000165343.c.a	ENSGT00940000166140	ENSGT00950000182944.A.b.c	ENSGT00940000157140.b.b.a	ENSGT00470000042444 #30	ENSGT00940000161143 #29	ENSGT01050000244887.A.a.a.a.i #22	ENSGT00940000159543 #23	ENSGT00940000165948	ENSGT00940000159801.B #19	ENSGT00940000159089 #18	ENSGT00940000154819.a.b.c.b.d	ENSGT00940000156887.b #7	ENSGT00530000063000.a.a.b.j #21	ENSGT00940000157700.c	ENSGT00390000010768	ENSGT00940000158046.a.b	ENSGT01030000234586.A.b.a	ENSGT00650000094757	ENSGT00940000157340.k.a	ENSGT00390000017489.b	ENSGT00950000183213.a.a.a
Cottioidei	ANCESTRAL SPECIES	3	ENSGT00940000158145.a	ENSGT00390000000053.a	ENSGT00390000004368	ENSGT00940000157552.s.a	ENSGT00940000164506.b.a	ENSGT00530000063926.b	ENSGT00950000182916.a.b.a.a.a.b.a.a	ENSGT00940000163721	ENSGT00390000017673.b.k	ENSGT00390000012436.h	ENSGT00940000165343.c.a	ENSGT00940000166140	ENSGT00940000157140.b.b.a	ENSGT00470000042444 #30	ENSGT00940000161143 #29	ENSGT01050000244887.A.a.a.a.i #22	ENSGT00940000159543 #23	ENSGT00940000165948	ENSGT00940000159801.B #19	ENSGT00940000159089 #18	ENSGT00940000154819.a.b.c.b.d	ENSGT00940000156887.b #7	ENSGT00530000063000.a.a.b.j #21	ENSGT00940000157700.c	ENSGT00390000010768	ENSGT00940000158046.a.b	ENSGT01030000234586.A.b.a	ENSGT00650000094757	ENSGT00940000157340.k.a	ENSGT00390000017489.b	ENSGT00950000183213.a.a.a
Lumpfish	MODERN SPECIES		ENSCLMG00005009870	ENSCLMG00005009868	pld6 (ENSCLMG00005009867)	RAB3D (ENSCLMG00005009866)	tspan34 (ENSCLMG00005009728)	dand5 (ENSCLMG00005009726)	NFIX (ENSCLMG00005009722)	rnf11a (ENSCLMG00005009721)	ENSCLMG00005009720	ENSCLMG00005009719	ENSCLMG00005009718	ENSCLMG00005009717	ENSCLMG00005009716	zglp1 (ENSCLMG00005009715) #30	fdx2 (ENSCLMG00005009714) #29	s1pr5b (ENSCLMG00005009713) #22	keap1b (ENSCLMG00005009711) #23	ENSCLMG00005009710	CDKN2D (ENSCLMG00005009709) #19	ap1m2 (ENSCLMG00005009306) #18	ENSCLMG00005003849	SMARCA4 (ENSCLMG00005002722) #7	atg4da (ENSCLMG00005002712) #21	ENSCLMG00005002709	ENSCLMG00005002707	rnaseh2a (ENSCLMG00005002705)	ENSCLMG00005002704	ENSCLMG00005002703	ENSCLMG00005002702	smdt1b (ENSCLMG00005002701)	zgc:158803 (ENSCLMG00005002700)
Stickleback	MODERN SPECIES	4	ENSGACG00000019444	ENSGACG00000019446	ENSGACG00000019448	pld6 (ENSGACG00000019449)	RAB3D (ENSGACG00000019452)	tspan34 (ENSGACG00000019454)	dand5 (ENSGACG00000019460)	NFIX (ENSGACG00000019462)	ENSGACG00000019465	rnf11a (ENSGACG00000019466)	HMOX1 (ENSGACG00000019469)	ENSGACG00000019473	ENSGACG00000019475	ENSGACG00000019476	fdx2 (ENSGACG00000019477) #29	s1pr5b (ENSGACG00000019478) #22	keap1b (ENSGACG00000019479) #23	ENSGACG00000019486	ENSGACG00000019487	ENSGACG00000019488	CDKN2D (ENSGACG00000019491) #19	ap1m2 (ENSGACG00000019492) #18	ENSGACG00000019500	parn (ENSGACG00000019501)	ENSGACG00000019507	ENSGACG00000019510	thumpd1 (ENSGACG00000019511)	AXIN1 (ENSGACG00000019513)	GTF3C1 (ENSGACG00000019516)	ENSGACG00000019523 #27	ENSGACG00000019526 ##24
Perciformes_a	ANCESTRAL SPECIES		ENSGT00390000000053.a	ENSGT00390000004368	ENSGT00940000157552.s.a	ENSGT00940000164506.b.a	ENSGT00530000063926.b	ENSGT00950000182916.a.b.a.a.a.b.a.a	ENSGT00940000163721	ENSGT00390000017673.b.k	ENSGT00390000012436.h	ENSGT00940000165343.c.a	ENSGT00940000166140	ENSGT00950000182944.A.b.c	ENSGT00940000157140.b.b.a	ENSGT00470000042444 #30	ENSGT00940000161143 #29	ENSGT01050000244887.A.a.a.a.i #22	ENSGT00940000159543 #23	ENSGT00940000165948	ENSGT00940000159801.B #19	ENSGT00940000159089 #18	ENSGT00940000154819.a.b.c.b.d	ENSGT00940000156887.b #7	ENSGT00530000063000.a.a.b.j #21	ENSGT00940000157700.c	ENSGT00390000010768	ENSGT00940000158046.a.b	ENSGT01030000234586.A.b.a	ENSGT00940000157340.k.a	ENSGT00390000017489.b	ENSGT00950000183213.a.a.a	ENSGT00390000017504
Pike perch	MODERN SPECIES	69	PLPPR2 (ENSSLUG00000024794)	elof1 (ENSSLUG00000024791)	pld6 (ENSSLUG00000024790)	RAB3D (ENSSLUG00000024787)	tspan34 (ENSSLUG00000024786)	dand5 (ENSSLUG00000024784)	NFIX (ENSSLUG00000024749)	rnf11a (ENSSLUG00000024737)	HMOX1 (ENSSLUG00000024735)	ENSSLUG00000024733	ENSSLUG00000024731	NEU3 (ENSSLUG00000024708)	ENSSLUG00000024698	ENSSLUG00000024697 #30	fdx2 (ENSSLUG00000024696) #29	s1pr5b (ENSSLUG00000024694) #22	keap1b (ENSSLUG00000024692) #23	ENSSLUG00000024687	CDKN2D (ENSSLUG00000024686) #19	ap1m2 (ENSSLUG00000024580) #18	ENSSLUG00000023970	SMARCA4 (ENSSLUG00000016006) #7	atg4da (ENSSLUG00000015299) #21	MAST1 (ENSSLUG00000015278)	ENSSLUG00000015266	rnaseh2a (ENSSLUG00000015229)	SOX10 (ENSSLUG00000015215)	ENSSLUG00000015124	smdt1b (ENSSLUG00000015111)	zgc:158803 (ENSSLUG00000015101)	ENSSLUG00000015093
Channel bull blenny	MODERN SPECIES		elof1 (ENSCGOG00000021727)	pld6 (ENSCGOG00000021726)	ENSCGOG00000021724	tspan34 (ENSCGOG00000021722)	dand5 (ENSCGOG00000021720)	NFIX (ENSCGOG00000021693)	rnf11a (ENSCGOG00000021688)	HMOX1 (ENSCGOG00000021690)	ENSCGOG00000021685	ENSCGOG00000021681	ENSCGOG00000021679	NEU3 (ENSCGOG00000021678)	ENSCGOG00000021677	ENSCGOG00000021676 #30	fdx2 (ENSCGOG00000021674) #29	s1pr5b (ENSCGOG00000021673) #22	keap1b (ENSCGOG00000021671) #23	ENSCGOG00000021669	CDKN2D (ENSCGOG00000021666) #19	ap1m2 (ENSCGOG00000021610) #18	ENSCGOG00000021526	SMARCA4 (ENSCGOG00000020723) #7	atg4da (ENSCGOG00000020669) #21	MAST1 (ENSCGOG00000020651)	rnaseh2a (ENSCGOG00000020614)	SOX10 (ENSCGOG00000020612)	ENSCGOG00000020610	ENSCGOG00000020609	ENSCGOG00000020606	smdt1b (ENSCGOG00000020607)	zgc:158803 (ENSCGOG00000020554)
Eupecaria_C	ANCESTRAL SPECIES	14	ENSGT00390000004368	ENSGT00940000157552.s.a	ENSGT00940000164506.b.a	ENSGT00530000063926.b	ENSGT00950000182916.a.b.a.a.a.b.a.a	ENSGT00940000163721	ENSGT00390000017673.b.k	ENSGT00390000012436.h	ENSGT00940000165343.c.a	ENSGT00940000166140	ENSGT00950000182944.A.b.c.d	ENSGT00950000182944.A.b.d	ENSGT00940000157140.b.b.a	ENSGT00470000042444 #30	ENSGT00940000161143 #29	ENSGT01050000244887.A.a.a.a.i #22	ENSGT00940000159543 #23	ENSGT00940000165948	ENSGT00940000159801.B #19	ENSGT00940000159089 #18	ENSGT00940000154819.a.b.c.b.d	ENSGT00940000156887.b #7	ENSGT00530000063000.a.a.b.j #21	ENSGT00940000157700.c	ENSGT00390000010768	ENSGT00940000158046.a.b	ENSGT01030000234586.A.b.a	ENSGT00940000157340.k.a	ENSGT00390000017489.b	ENSGT00950000183213.a.a.a	ENSGT00390000017504
Eupercaria_incertae_sedis	ANCESTRAL SPECIES	13	ENSGT00390000004368	ENSGT00940000157552.s.a	ENSGT00940000164506.b.a	ENSGT00530000063926.b	ENSGT00950000182916.a.b.a.a.a.b.a.a	ENSGT00940000163721	ENSGT00390000017673.b.k	ENSGT00390000012436.h	ENSGT00940000165343.c.a	ENSGT00940000166140	ENSGT00950000182944.A.b.c.d	ENSGT00950000182944.A.b.d	ENSGT00940000157140.b.b.a	ENSGT00470000042444 #30	ENSGT00940000161143 #29	ENSGT01050000244887.A.a.a.a.i #22	ENSGT00940000159543 #23	ENSGT00940000165948	ENSGT00940000159801.B #19	ENSGT00940000159089 #18	ENSGT00940000154819.a.b.c.b.d	ENSGT00940000156887.b #7	ENSGT00530000063000.a.a.b.j #21	ENSGT00940000157700.c	ENSGT00390000010768	ENSGT00940000158046.a.b	ENSGT01030000234586.A.b.a	ENSGT00940000157340.k.a	ENSGT00390000017489.b	ENSGT00950000183213.a.a.a	ENSGT00390000017504
Large yellow croaker	MODERN SPECIES	481	ENSLCRG00005002436	tspan34 (ENSLCRG00005002441)	dand5 (ENSLCRG00005002448)	NFIX (ENSLCRG00005002487)	rnf11a (ENSLCRG00005002528)	HMOX1 (ENSLCRG00005002532)	ENSLCRG00005002538	ENSLCRG00005002542	ENSLCRG00005002548	NEU3 (ENSLCRG00005002553)	ENSLCRG00005002559	NEU3 (ENSLCRG00005002612)	ENSLCRG00005002614	ENSLCRG00005002617 #30	fdx2 (ENSLCRG00005002620) #29	s1pr5b (ENSLCRG00005002624) #22	keap1 (ENSLCRG00005002628) #23	ENSLCRG00005002636	CDKN2D (ENSLCRG00005002639) #19	ap1m2 (ENSLCRG00005002656) #18	ENSLCRG00005002982	SMARCA4 (ENSLCRG00005007894) #7	atg4da (ENSLCRG00005008780) #21	MAST1 (ENSLCRG00005008792)	rnaseh2a (ENSLCRG00005009186)	SOX10 (ENSLCRG00005009213)	KCNJ4 (ENSLCRG00005009214)	ENSLCRG00005009215	smdt1b (ENSLCRG00005009216)	zgc:158803 (ENSLCRG00005009217)	pane1 (ENSLCRG00005009220)
European seabass	MODERN SPECIES	20	ENSDLAG00005033110	ENSDLAG00005029455	ENSDLAG00005007991	ENSDLAG00005008025	ENSDLAG00005021936	ENSDLAG00005008056	ENSDLAG00005030170	ENSDLAG00005008075	ENSDLAG00005031386	ENSDLAG00005008204	ENSDLAG00005032780	ENSDLAG00005008225	ENSDLAG00005008231	ENSDLAG00005008241	ENSDLAG00005029476 #30	s1pr5b (ENSDLAG00005035010) #22	keap1b (ENSDLAG00005008271) #23	ENSDLAG00005008311	ap1m2 (ENSDLAG00005008335) #18	ENSDLAG00005008870	ENSDLAG00005009156 #7	ENSDLAG00005009447 #21	ENSDLAG00005009485	ENSDLAG00005010262	ENSDLAG00005010273	ENSDLAG00005010276	ENSDLAG00005010277	ENSDLAG00005010287	zgc:158803 (ENSDLAG00005010289)	ENSDLAG00005027542	mb (ENSDLAG00005010315)
Gilthead seabream	MODERN SPECIES		palm3 (ENSSAUG00010003874)	ENSSAUG00010003869	elof1 (ENSSAUG00010003841)	pld6 (ENSSAUG00010003834)	ENSSAUG00010003832	tspan34 (ENSSAUG00010003831)	dand5 (ENSSAUG00010003827)	NFIX (ENSSAUG00010003122)	rnf11a (ENSSAUG00010003075)	HMOX1 (ENSSAUG00010003067)	ENSSAUG00010003063	ENSSAUG00010003057	NEU3 (ENSSAUG00010003053)	ENSSAUG00010003043 #30	fdx2 (ENSSAUG00010003033) #29	s1pr5b (ENSSAUG00010003030) #22	keap1b (ENSSAUG00010003018) #23	ENSSAUG00010003007	CDKN2D (ENSSAUG00010002999) #19	ap1m2 (ENSSAUG00010025874) #18	ENSSAUG00010025464	SMARCA4 (ENSSAUG00010025426) #7	atg4da (ENSSAUG00010025418) #21	MAST1 (ENSSAUG00010025373)	rnaseh2a (ENSSAUG00010025366)	SOX10 (ENSSAUG00010025364)	KCNJ4 (ENSSAUG00010025363)	ENSSAUG00010025362	smdt1b (ENSSAUG00010025359)	zgc:158803 (ENSSAUG00010025358)	ENSSAUG00010025357
Pinecone sodierfish	MODERN SPECIES		ENSMMDG00005024846	PLPPR2 (ENSMMDG00005024847)	elof1 (ENSMMDG00005024849)	pld6 (ENSMMDG00005024850)	RAB3D (ENSMMDG00005024851)	ENSMMDG00005024852	dand5 (ENSMMDG00005024853)	NFIX (ENSMMDG00005024854)	rnf11a (ENSMMDG00005024855)	HMOX1 (ENSMMDG00005024856)	ENSMMDG00005024857	ENSMMDG00005024858	ENSMMDG00005024859	zglp1 (ENSMMDG00005024860) #30	fdx2 (ENSMMDG00005024861) #29	s1pr5b (ENSMMDG00005024862) #22	keap1b (ENSMMDG00005024863) #23	ENSMMDG00005024864	CDKN2D (ENSMMDG00005024865) #19	ap1m2 (ENSMMDG00005024866) #18	ENSMMDG00005024867	SMARCA4 (ENSMMDG00005024868) #7	atg4da (ENSMMDG00005024869) #21	ENSMMDG00005024870	ENSMMDG00005024871	ENSMMDG00005024872	rnaseh2a (ENSMMDG00005024873)	SOX10 (ENSMMDG00005024874)	ENSMMDG00005024875	ENSMMDG00005024876	smdt1b (ENSMMDG00005024877)
Cod	MODERN SPECIES	16	ENSGMOG00000028620	ENSGMOG00000031089	ENSGMOG00000034361	ENSGMOG00000034761	ENSGMOG00000011994	dand5 (ENSGMOG00000024210)	ENSGMOG00000012009	rnf11a (ENSGMOG00000027236)	ENSGMOG00000012030	ENSGMOG00000030122	ENSGMOG00000032896	ENSGMOG00000020570	ENSGMOG00000029319 #30	fdx2 (ENSGMOG00000012048) #29	ENSGMOG00000034659	s1pr5b (ENSGMOG00000017756) #22	ENSGMOG00000017706	ENSGMOG00000017671	acox1 (ENSGMOG00000017643)	ten1 (ENSGMOG00000017638)	evpla (ENSGMOG00000017592)	srp68 (ENSGMOG00000017562)	ENSGMOG00000017535	ENSGMOG00000030175	ENSGMOG00000006294	ENSGMOG00000006262	ENSGMOG00000033400	ENSGMOG00000003665	ENSGMOG00000003509	ENSGMOG00000003439	ENSGMOG00000003410
Protacanthopterygii	ANCESTRAL SPECIES	59	ENSGT00990000204498	ENSGT00990000204330	ENSGT00940000158145.a	ENSGT00390000000053.a	ENSGT00390000004368	ENSGT00940000157552.s.a	ENSGT00940000164506.b.a	ENSGT00940000164506.a.a	ENSGT00530000063926.b	ENSGT00950000182916.a.b.a.a.a.b.a.a	ENSGT00940000163721	ENSGT00390000017673.b.k	ENSGT00390000012436.h	ENSGT00940000165343.c.a	ENSGT00940000166140	ENSGT01050000244887.A.a.a.a.i #22	ENSGT00940000159543 #23	ENSGT00940000165948	ENSGT00940000159801.B #19	ENSGT00940000159089 #18	ENSGT00940000177737	ENSGT00940000154819.a.b.c.b	ENSGT00940000156887.b #7	ENSGT00530000063000.a.a.b.j #21	ENSGT00940000157700.c	ENSGT00390000010768	ENSGT00940000161451.a.a	ENSGT00940000156270	ENSGT00390000009265	ENSGT00390000015948.b	ENSGT01030000234642.a.a
Salmoninae	ANCESTRAL SPECIES	14	ENSGT00530000063926.b	ENSGT00950000182916.a.b.a.a.a.b.a.a.c.a	ENSGT00940000163721	ENSGT00390000017673.b.k.c.a	ENSGT00390000017673.b.k.c.b	ENSGT00390000012436.h.d	ENSGT00940000165343.c.a	ENSGT00940000166140.a.b	ENSGT00390000017673.b.k.d	ENSGT00390000012436.h.c	ENSGT00940000165343.d	ENSGT00940000166140.a.a	ENSGT00940000157140.b.b.b.d	ENSGT00470000042444 #30	ENSGT00940000161143.i.b #29	ENSGT01050000244887.A.a.a.a.i #22	ENSGT00940000159543 #23	ENSGT00940000165948	ENSGT00940000159801.B.c #19	ENSGT00940000159089.e #18	ENSGT00940000154819.a.b.c.b	ENSGT00940000156887.b #7	ENSGT00530000063000.a.a.b.j #21	ENSGT00940000157700.c.q	ENSGT00530000063000.a.a.b.i.d #21	ENSGT00940000157700.c.r	ENSGT00390000010768	ENSGT00940000161451.a.a.c.b	ENSGT00940000161451.a.a.d	ENSGT00940000156270	ENSGT00390000009265
Huchen	DUPLICATION
Huchen	MODERN SPECIES	3210																s1pr5b (ENSHHUG00000019204) #22	keap1b (ENSHHUG00000019174) #23	ENSHHUG00000019170	CDKN2D (ENSHHUG00000019167) #19	AP1M2 (ENSHHUG00000019047) #18	ENSHHUG00000018989
Huchen	MODERN SPECIES	1637													ENSHHUG00000034422	ENSHHUG00000034416	fdx2 (ENSHHUG00000034413) #29	s1pr5b (ENSHHUG00000034409) #22	ENSHHUG00000034405	keap1b (ENSHHUG00000034372) #23	ENSHHUG00000034366	CDKN2D (ENSHHUG00000034356) #19	AP1M2 (ENSHHUG00000034024) #18	ENSHHUG00000033245	SMARCA4 (ENSHHUG00000032794) #7	ENSHHUG00000032790	ENSHHUG00000032788	ENSHHUG00000032785	ENSHHUG00000032783
Salmoninae_a	ANCESTRAL SPECIES	33	ENSGT00940000157552.s.a.b	ENSGT00940000164506.b.a.f	ENSGT00940000164506.a.a	ENSGT00940000157552.s.a.a	ENSGT00940000164506.b.a.e.a	ENSGT00530000063926.b	ENSGT00950000182916.a.b.a.a.a.b.a.a.c.a	ENSGT00940000163721	ENSGT00390000017673.b.k.d	ENSGT00390000012436.h.c	ENSGT00940000165343.c.a	ENSGT00940000166140.a.b	ENSGT00940000157140.b.b.b.d	ENSGT00470000042444 #30	ENSGT00940000161143.i.b #29	ENSGT01050000244887.A.a.a.a.i #22	ENSGT00940000159543 #23	ENSGT00940000165948.k	ENSGT00940000159801.B.c.a #19	ENSGT00940000159089.e #18	ENSGT00940000154819.a.b.c.b	ENSGT00940000156887.b #7	ENSGT00530000063000.a.a.b.j #21	ENSGT00940000157700.c.r	ENSGT00390000010768.h.b	ENSGT00940000161451.a.a.d	ENSGT00940000156270.e	ENSGT00390000009265	ENSGT00390000015948.b.d	ENSGT01030000234642.a.a	ENSGT00580000081628
Salmo	DUPLICATION
Salmo	ANCESTRAL SPECIES	75	ENSGT00940000158145.a.e	ENSGT00390000000053.b.t	ENSGT00390000004368.i	ENSGT00940000157552.s.a.b	ENSGT00940000164506.b.a.e.a.b	ENSGT00950000182916.a.b.a.a.a.b.a.a.c.a.b	ENSGT00940000163721.t.b	ENSGT00390000017673.b.k.d	ENSGT00390000012436.h.c	ENSGT00940000165343.c.a.e	ENSGT00940000166140.a.b	ENSGT00940000166140.b	ENSGT00940000157140.b.b.b.d.b	ENSGT00470000042444.b #30	ENSGT00940000161143.i.a #29	ENSGT01050000244887.A.a.a.a.i.i #22	ENSGT00940000159543.b #23	ENSGT00940000165948.k	ENSGT00940000159801.B.d #19	ENSGT00940000159089.f #18	ENSGT00940000154819.a.b.c.b.f	ENSGT00940000156887.b.j #7	ENSGT00530000063000.a.a.b.j.h #21	ENSGT00940000157700.c.q	ENSGT00390000009265	ENSGT00390000010768.h.a	ENSGT00940000161451.a.a.c.b	ENSGT00940000156270.f	ENSGT00390000015948.b.c.a	ENSGT01030000234642.a.a.c	ENSGT00580000081628.i
Atlantic salmon	MODERN SPECIES	3	ENSSSAG00000116686	ENSSSAG00000000569	ENSSSAG00000000594	dand5 (ENSSSAG00000097215)	ENSSSAG00000119542	ENSSSAG00000109061	ENSSSAG00000000674	rnf11a (ENSSSAG00000000704)	ENSSSAG00000000719	ENSSSAG00000105344	ENSSSAG00000000734	ENSSSAG00000111482	ENSSSAG00000000738	ENSSSAG00000063503	ENSSSAG00000000748 #30	s1pr5b (ENSSSAG00000109157) #22	keap1b (ENSSSAG00000000789) #23	ENSSSAG00000059543	ENSSSAG00000059525 #19	ENSSSAG00000059187 #18	ENSSSAG00000039549	ENSSSAG00000007791 #7	ENSSSAG00000007658 #21	ENSSSAG00000007403	ENSSSAG00000007449	ENSSSAG00000007077	adra2a (ENSSSAG00000007378)	ENSSSAG00000116566	shoc2 (ENSSSAG00000007350)	pdcd4b (ENSSSAG00000007194)	RBM20 (ENSSSAG00000007161)
River trout	MODERN SPECIES	5	PLPPR2 (ENSSTUG00000038067)	elof1 (ENSSTUG00000038104)	pld6 (ENSSTUG00000038116)	RAB3D (ENSSTUG00000038123)	tspan34 (ENSSTUG00000038169)	ENSSTUG00000038188	NFIX (ENSSTUG00000038221)	rnf11a (ENSSTUG00000038274)	ENSSTUG00000038287	ENSSTUG00000038318	ENSSTUG00000038329	ENSSTUG00000038333	ENSSTUG00000038340	ENSSTUG00000038363 #30	fdx2 (ENSSTUG00000038372) #29	s1pr5b (ENSSTUG00000038384) #22	keap1b (ENSSTUG00000038417) #23	ENSSTUG00000039030	CDKN2D (ENSSTUG00000039035) #19	AP1M2 (ENSSTUG00000039048) #18	ENSSTUG00000039191	SMARCA4 (ENSSTUG00000043678) #7	atg4da (ENSSTUG00000045777) #21	MAST1 (ENSSTUG00000045793)	rnaseh2a (ENSSTUG00000045957)	adra2a (ENSSTUG00000045983)	shoc2 (ENSSTUG00000045994)	bbip1 (ENSSTUG00000046022)	pdcd4b (ENSSTUG00000046044)	RBM20 (ENSSTUG00000046530)	smc3 (ENSSTUG00000046554)
Salmo	ANCESTRAL SPECIES	79	ENSGT00940000158145.a.f.b	ENSGT00390000000053.a	ENSGT00390000004368.j	ENSGT00940000157552.s.a.a	ENSGT00940000164506.b.a.e.a.a	ENSGT00940000164506.a.a	ENSGT00530000063926.b	ENSGT00950000182916.a.b.a.a.a.b.a.a.c.a.a	ENSGT00940000163721.t.a	ENSGT00390000012436.h.d	ENSGT00940000165343.c.a.f	ENSGT00940000166140.a.a	ENSGT00940000157140.b.b.b.d.a	ENSGT00470000042444.a.a #30	ENSGT00940000161143.i.b #29	ENSGT01050000244887.A.a.a.a.i.j #22	ENSGT00940000159543.a #23	ENSGT00940000165948.l	ENSGT00940000159801.B.c.a #19	ENSGT00940000159089.e #18	ENSGT00940000154819.a.b.c.b.e	ENSGT00940000156887.b.i #7	ENSGT00530000063000.a.a.b.j.g #21	ENSGT00940000157700.c.r	ENSGT00390000010768.h.b	ENSGT00940000161451.a.a.c.a	ENSGT00940000156270.e	ENSGT00390000015948.b.c.b	ENSGT01030000234642.a.a.d	ENSGT00580000081628.j	ENSGT00940000159529.c.a.e
Atlantic salmon	MODERN SPECIES	11	ENSSSAG00000083002	ENSSSAG00000000530	ENSSSAG00000095053	ENSSSAG00000070438	ENSSSAG00000115616	ENSSSAG00000000395	ENSSSAG00000000404	ENSSSAG00000119130	ENSSSAG00000090884	ENSSSAG00000094474	ENSSSAG00000039415	ENSSSAG00000039368	ENSSSAG00000039388	ENSSSAG00000100662	ENSSSAG00000112778 #30	s1pr5b (ENSSSAG00000103422) #22	keap1b (ENSSSAG00000059599) #23	ENSSSAG00000101878	ENSSSAG00000119700	cdn2d (ENSSSAG00000000830) #19	ENSSSAG00000000837 #18	ENSSSAG00000000924	ENSSSAG00000001534 #7	ENSSSAG00000120604 #21	ENSSSAG00000010449	ENSSSAG00000095214	ENSSSAG00000007380	adra2a (ENSSSAG00000010836)	shoc2 (ENSSSAG00000010861)	pdcd4 (ENSSSAG00000012709)	RBM20 (ENSSSAG00000020216)
River trout	MODERN SPECIES	31	elof1 (ENSSTUG00000045232)	pld6 (ENSSTUG00000045225)	tspan34 (ENSSTUG00000045196)	ENSSTUG00000045190	dand5 (ENSSTUG00000045174)	NFIX (ENSSTUG00000045022)	rnf11a (ENSSTUG00000045005)	ENSSTUG00000045001	ENSSTUG00000044969	ENSSTUG00000044957	ENSSTUG00000044941	ENSSTUG00000044938	ENSSTUG00000044924	ENSSTUG00000044914 #30	fdx2 (ENSSTUG00000044907) #29	s1pr5b (ENSSTUG00000044895) #22	keap1b (ENSSTUG00000044774) #23	ENSSTUG00000044764	CDKN2D (ENSSTUG00000044759) #19	AP1M2 (ENSSTUG00000044456) #18	ENSSTUG00000044422	ENSSTUG00000040557	SMARCA4 (ENSSTUG00000037345) #7	atg4da (ENSSTUG00000037257) #21	MAST1 (ENSSTUG00000036970)	rnaseh2a (ENSSTUG00000036814)	adra2a (ENSSTUG00000036789)	shoc2 (ENSSTUG00000036759)	bbip1 (ENSSTUG00000036752)	pdcd4b (ENSSTUG00000036027)	RBM20 (ENSSTUG00000036000)
Oncorhynchus	ANCESTRAL SPECIES	1	ENSGT00390000004368	ENSGT00940000157552.s.a.b	ENSGT00940000164506.b.a.f.a.b	ENSGT00940000164506.a.a	ENSGT00940000164506.b.a.f.b	ENSGT00530000063926.b	ENSGT00950000182916.a.b.a.a.a.b.a.a.d	ENSGT00940000163721	ENSGT00390000017673.b.k.d	ENSGT00390000012436.h.c	ENSGT00940000165343.c.a	ENSGT00940000166140.a.b	ENSGT00940000157140.b.b.b.d.c	ENSGT00470000042444.c.a #30	ENSGT00940000161143.i.b #29	ENSGT01050000244887.A.a.a.a.i #22	ENSGT00940000159543 #23	ENSGT00940000165948.k.a.a	ENSGT00940000159801.B.c.a #19	ENSGT00940000159089.e #18	ENSGT00940000154819.a.b.c.b	ENSGT00940000156887.b #7	ENSGT00530000063000.a.a.b.j #21	ENSGT00940000157700.c.r	ENSGT00390000010768.h.b	ENSGT00940000161451.a.a.d	ENSGT00940000156270.e	ENSGT00390000009265	ENSGT00390000015948.b.d	ENSGT01030000234642.a.a	ENSGT00580000081628
Oncorhynchus_a	ANCESTRAL SPECIES	125	ENSGT00940000157552.s.a.b	ENSGT00940000164506.b.a.f.a.b	ENSGT00940000164506.a.a	ENSGT00940000164506.b.a.f.b	ENSGT00530000063926.b	ENSGT00950000182916.a.b.a.a.a.b.a.b.n	ENSGT00390000012078.a.b.c	ENSGT00940000163721	ENSGT00390000017673.b.k.d.a	ENSGT00390000012436.h.d	ENSGT00940000165343.c.a	ENSGT00940000166140.a.b	ENSGT00940000157140.b.b.b.d.d	ENSGT00470000042444.d #30	ENSGT00940000161143.i.b #29	ENSGT01050000244887.A.a.a.a.i #22	ENSGT00940000159543 #23	ENSGT00940000165948.k.a.b	ENSGT00940000165948.k.a.a	ENSGT00940000159801.B.c.a #19	ENSGT00940000159089.f #18	ENSGT00940000154819.a.b.c.b	ENSGT00940000156887.b #7	ENSGT00530000063000.a.a.b.j #21	ENSGT00940000157700.c.r	ENSGT00390000010768.h.b	ENSGT00940000161451.a.a.d	ENSGT00940000156270.e	ENSGT01030000235307	ENSGT00390000015948.b.d	ENSGT01030000234642.a.a
Coho salmon	DUPLICATION
Coho salmon	MODERN SPECIES		ENSOKIG00005009796	PLD6 (ENSOKIG00005009810)	rab3da (ENSOKIG00005009822)	ENSOKIG00005009859	dand5 (ENSOKIG00005020059)	NFIX (ENSOKIG00005020079)	ENSOKIG00005020202	ENSOKIG00005020207	rnf11a (ENSOKIG00005020210)	ENSOKIG00005020215	ENSOKIG00005020227	ENSOKIG00005020238	ENSOKIG00005020244	ENSOKIG00005020266 #30	fdx2 (ENSOKIG00005020273) #29	s1pr5b (ENSOKIG00005020277) #22	keap1b (ENSOKIG00005020303) #23	ENSOKIG00005020370	CDKN2D (ENSOKIG00005021389) #19	AP1M2 (ENSOKIG00005020441) #18	ENSOKIG00005021547	SMARCA4 (ENSOKIG00005024660) #7	atg4da (ENSOKIG00005025851) #21	MAST1 (ENSOKIG00005025942)	ENSOKIG00005026329	rnaseh2a (ENSOKIG00005026346)	adra2a (ENSOKIG00005026391)	shoc2 (ENSOKIG00005026396)	bbip1 (ENSOKIG00005026413)	pdcd4b (ENSOKIG00005026471)	RBM20 (ENSOKIG00005027529)
Coho salmon	MODERN SPECIES	12	ENSOKIG00005018180	JUNB (ENSOKIG00005018202)	BEST2 (ENSOKIG00005018213)	GET3 (ENSOKIG00005018253)	ENSOKIG00005018272	DDX17 (ENSOKIG00005018358)	GGA1 (ENSOKIG00005020336)	wdr83os (ENSOKIG00005020745)	wdr83 (ENSOKIG00005020770)	PSPN (ENSOKIG00005020798)	ENSOKIG00005020804	yju2b (ENSOKIG00005020810)	ENSOKIG00005020826	PDGFA (ENSOKIG00005020981)	fdx2 (ENSOKIG00005021008) #29	ENSOKIG00005021022 #22	fdx2 (ENSOKIG00005021030) #29	ENSOKIG00005021040 #30	ENSOKIG00005021054	ENSOKIG00005021063	ENSOKIG00005021082	ENSOKIG00005021118	ENSOKIG00005021132	ENSOKIG00005021147	ENSOKIG00005021195	ENSOKIG00005021207	pdcd4b (ENSOKIG00005021221)	ENSOKIG00005021229	ENSOKIG00005021243	ADRA2A (ENSOKIG00005021247)	SHOC2 (ENSOKIG00005021256)
Chinook salmon	MODERN SPECIES	2081																ENSOTSG00005018290 #22
Rainbow trout	DUPLICATION
Rainbow trout	MODERN SPECIES	8	ENSOMYG00000068738	ENSOMYG00000057483	ENSOMYG00000071095	ENSOMYG00000065896	dand5 (ENSOMYG00000070027)	ENSOMYG00000050973	rnf11a (ENSOMYG00000043465)	ENSOMYG00000060443	ENSOMYG00000071975	ENSOMYG00000076070	ENSOMYG00000071344	ENSOMYG00000070142	ENSOMYG00000007070	ENSOMYG00000006941 #30	fdx2 (ENSOMYG00000048092) #29	s1pr5b (ENSOMYG00000006845) #22	keap1b (ENSOMYG00000058246) #23	ENSOMYG00000074612	ENSOMYG00000056829 #19	ENSOMYG00000066058 #18	ENSOMYG00000056046	ENSOMYG00000010588 #7	ENSOMYG00000009349 #21	ENSOMYG00000057174	ENSOMYG00000065508	ENSOMYG00000076744	ENSOMYG00000077793	adra2a (ENSOMYG00000077571)	shoc2 (ENSOMYG00000050955)	bbip1 (ENSOMYG00000009143)	pdcd4b (ENSOMYG00000009912)
Rainbow trout	MODERN SPECIES	4	ENSOMYG00000052930	ENSOMYG00000011525	ENSOMYG00000011585	ENSOMYG00000039118	ENSOMYG00000011600	ENSOMYG00000075789	ENSOMYG00000067255	ENSOMYG00000011475	ENSOMYG00000034574	ENSOMYG00000060084	ENSOMYG00000034627	ENSOMYG00000034636	ENSOMYG00000007049	ENSOMYG00000065341 #30	fdx2 (ENSOMYG00000007009) #29	s1pr5b (ENSOMYG00000066942) #22	keap1b (ENSOMYG00000011445) #23	ENSOMYG00000011424	ENSOMYG00000011413 #19	ENSOMYG00000011167 #18	ENSOMYG00000010728	ENSOMYG00000009750 #7	ENSOMYG00000060444 #21	ENSOMYG00000069973	ENSOMYG00000006242	ENSOMYG00000076437	ENSOMYG00000032267	adra2a (ENSOMYG00000009116)	shoc2 (ENSOMYG00000009051)	bbip1 (ENSOMYG00000007091)	pdcd4b (ENSOMYG00000007073)
Northern pike	MODERN SPECIES	8	pld6 (ENSELUG00000023764)	RAB3D (ENSELUG00000023722)	tspan34 (ENSELUG00000023690)	ENSELUG00000029302	dand5 (ENSELUG00000023679)	ENSELUG00000023674	NFIX (ENSELUG00000023645)	rnf11a (ENSELUG00000032594)	hmox (ENSELUG00000023580)	ENSELUG00000023550	ENSELUG00000023533	ENSELUG00000023503	ENSELUG00000023498	ENSELUG00000023468 #30	fdx2 (ENSELUG00000023442) #29	s1pr5b (ENSELUG00000023398) #22	keap1b (ENSELUG00000023382) #23	ENSELUG00000023317	CDKN2D (ENSELUG00000023292) #19	ap1m2 (ENSELUG00000023282) #18	ENSELUG00000029870	ENSELUG00000023242	SMARCA4 (ENSELUG00000023232) #7	atg4da (ENSELUG00000023164) #21	MAST1 (ENSELUG00000023152)	rnaseh2a (ENSELUG00000023079)	adra2a (ENSELUG00000023041)	shoc2 (ENSELUG00000023017)	bbip1 (ENSELUG00000030082)	pdcd4b (ENSELUG00000022960)	RBM20 (ENSELUG00000022906)
Clupeocephala	ANCESTRAL SPECIES	5	ENSGT00940000156865.b	ENSGT01050000244824.G	ENSGT00390000017673.b.l	ENSGT00640000091519	ENSGT00940000157805	ENSGT00390000012436.g	ENSGT00940000165343.c.b	ENSGT01030000234881	ENSGT00390000012436.h	ENSGT00940000165343.c.a	ENSGT00940000166140	ENSGT00940000157140.b.b.b	ENSGT00470000042444 #30	ENSGT00940000161143 #29	ENSGT01050000244887.A.a.a.a.i #22	ENSGT01050000244887.A.a.a.a.j #22	ENSGT00390000005584	ENSGT00390000005605 #20	ENSGT00940000154819.a.b.c.a	ENSGT00940000156887.a #7	ENSGT00530000063000.a.a.b.i #21	ENSGT00940000157700.d	ENSGT00950000183144.B	ENSGT00940000154277.b.b.b	ENSGT00940000155828	ENSGT00940000161195.a.b	ENSGT00940000161361	ENSGT00390000003817	ENSGT00940000163721	ENSGT00950000182916.a.b.a.a.a.b.a.a	ENSGT00530000063926.b
Otomorpha	ANCESTRAL SPECIES	4	ENSGT00530000063753.A.a	ENSGT00440000038745.a.a.a	ENSGT00940000178527	ENSGT00530000063753.A.b	ENSGT00530000063599.A	ENSGT00440000038745.a.a.b	ENSGT00940000156865.b	ENSGT00940000155729	ENSGT01050000244824.G	ENSGT00390000017673.b.l	ENSGT00640000091519	ENSGT00940000157805	ENSGT00390000012436.g	ENSGT00940000165343.c.b	ENSGT00940000157140.b.b.a	ENSGT01050000244887.A.a.a.a.j #22
Clupeiformes	ANCESTRAL SPECIES	315		ENSGT00530000063753.A.b	ENSGT00530000063599.A	ENSGT00440000038745.a.a.b	ENSGT00940000156865.b	ENSGT00940000155729	ENSGT01050000244824.G	ENSGT00390000017673.b.l	ENSGT00640000091519	ENSGT00940000157805	ENSGT00390000012436.g	ENSGT00940000165343.c.b	ENSGT00940000157140.b.b.a	ENSGT00940000175590	ENSGT00940000161143.g #29	ENSGT01050000244887.A.a.a.a.j #22	ENSGT00390000005584	ENSGT00940000166251
Denticle herring	MODERN SPECIES	17	MCHR1 (ENSDCDG00000030182)	ENSDCDG00000030192	ntn1b (ENSDCDG00000030197)	ENSDCDG00000030213	mfsd6l (ENSDCDG00000030218)	zgc:171844 (ENSDCDG00000030220)	tom1 (ENSDCDG00000030230)	gcat (ENSDCDG00000030262)	mcm5 (ENSDCDG00000030446)	hmox1a (ENSDCDG00000030454)	foxred2 (ENSDCDG00000030455)	ankrd54 (ENSDCDG00000030461)	hmgxb4a (ENSDCDG00000030463)	si:dkeyp-69e1.8 (ENSDCDG00000030466)	ENSDCDG00000030467	s1pr5a (ENSDCDG00000030468) #22	spc24 (ENSDCDG00000030469)	uqcrc2a (ENSDCDG00000030482)	snu13a (ENSDCDG00000031461)	ENSDCDG00000031463	anks4b (ENSDCDG00000031468)	ENSDCDG00000002898	DXO (ENSDCDG00000002918)	stk19 (ENSDCDG00000002936)	RAC1 (ENSDCDG00000002986)	ENSDCDG00000003051	SLC44A2 (ENSDCDG00000003514) #17	ENSDCDG00000005533	RBFOX3 (ENSDCDG00000005538)	cbx2 (ENSDCDG00000005543)	nog1 (ENSDCDG00000005545)
Atlantic herring	MODERN SPECIES		ENSCHAG00000015341	cfap52 (ENSCHAG00000015357)	ntn1b (ENSCHAG00000015494)	ENSCHAG00000015548	mfsd6l (ENSCHAG00000015564)	zgc:171844 (ENSCHAG00000015575)	tom1 (ENSCHAG00000015586)	gcat (ENSCHAG00000015618)	mcm5 (ENSCHAG00000016259)	hmox1a (ENSCHAG00000016675)	foxred2 (ENSCHAG00000016685)	ankrd54 (ENSCHAG00000016730)	hmgxb4a (ENSCHAG00000016777)	si:dkeyp-69e1.8 (ENSCHAG00000000076)	FDX2 (ENSCHAG00000000081) #29	s1pr5a (ENSCHAG00000000083) #22	spc24 (ENSCHAG00000000085)	ENSCHAG00000000087	uqcrc2a (ENSCHAG00000000097)	stk19 (ENSCHAG00000000147)	DXO (ENSCHAG00000000153)	ENSCHAG00000000159	RBFOX3 (ENSCHAG00000000171)	ENPP7 (ENSCHAG00000000182)	cbx2 (ENSCHAG00000000188)	nog1 (ENSCHAG00000000199)	pctp (ENSCHAG00000000206)	TMEM100 (ENSCHAG00000000216)	mmd (ENSCHAG00000000244)	hlfa (ENSCHAG00000000311)	FOXK2 (ENSCHAG00000000358)
Otophysi	ANCESTRAL SPECIES	8	ENSGT00530000063753.B.c	ENSGT00530000063753.A.a	ENSGT00940000178527	ENSGT00530000063753.A.b	ENSGT00530000063599.A	ENSGT00440000038745.a.a.b	ENSGT00940000156865.b	ENSGT00940000155729	ENSGT01050000244824.G	ENSGT00390000017673.b.l	ENSGT00640000091519	ENSGT00940000157805	ENSGT00390000012436.g	ENSGT00940000165343.c.b	ENSGT00940000157140.b.b.b	ENSGT01050000244887.A.a.a.a.j #22	ENSGT00390000005584	ENSGT00390000005605 #20	ENSGT00940000154819.a.b.c.a	ENSGT00940000156887.a #7	ENSGT00940000155603.B	ENSGT00940000154396.b.a.a.a	ENSGT01050000244879.a.b.e	ENSGT00940000156964.B	ENSGT00390000001244	ENSGT00940000156708.b	ENSGT00940000159355	ENSGT00940000158541	ENSGT00940000160081.c.b	ENSGT00940000158476.b	ENSGT00390000001390.a.b
Characiphysae	ANCESTRAL SPECIES	33					ENSGT00940000165096.b.a	ENSGT00950000183213.a.b	ENSGT00940000164726.a	ENSGT00940000155729	ENSGT01050000244824.G	ENSGT00390000017673.b.l	ENSGT00640000091519	ENSGT00940000157805	ENSGT00390000012436.g	ENSGT00940000165343.c.b	ENSGT00940000157140.b.b.b	ENSGT01050000244887.A.a.a.a.j #22	ENSGT00390000005584	ENSGT00390000005605 #20	ENSGT00940000154819.a.b.c.a	ENSGT00940000156887.a #7	ENSGT00940000155603.B	ENSGT00940000154396.b.a.a.a	ENSGT01050000244879.a.b.e	ENSGT00940000156964.B	ENSGT00390000001244	ENSGT00940000156708.b	ENSGT00940000159355	ENSGT00940000158541	ENSGT00940000160081.c.b	ENSGT00940000156201.a.b	ENSGT00940000157690
Characiphysae_b	ANCESTRAL SPECIES	24					ENSGT00940000165096.b.a	ENSGT00950000183213.a.b	ENSGT00940000164726.a	ENSGT00940000155729	ENSGT01050000244824.G	ENSGT00390000017673.b.l	ENSGT00640000091519	ENSGT00940000157805	ENSGT00390000012436.g	ENSGT00940000165343.c.b	ENSGT00940000157140.b.b.b	ENSGT01050000244887.A.a.a.a.j #22	ENSGT00390000005584	ENSGT00390000005605 #20	ENSGT00940000154819.a.b.c.a	ENSGT00940000156887.a #7	ENSGT00940000155603.B	ENSGT00940000154396.b.a.a.a	ENSGT01050000244879.a.b.e	ENSGT00940000156964.B	ENSGT00390000001244	ENSGT00940000156708.b	ENSGT00940000159355	ENSGT00940000158541	ENSGT00940000160081.c.b	ENSGT00940000158476.b	ENSGT00390000001390.a.b
Characoidei	ANCESTRAL SPECIES	97	ENSGT00940000166888	ENSGT00940000157296.o.b	ENSGT00390000002856	ENSGT00390000000111.a.m	ENSGT00940000165096.b.a	ENSGT00950000183213.a.b	ENSGT00940000164726.a	ENSGT00940000155729	ENSGT01050000244824.G	ENSGT00390000017673.b.l	ENSGT00640000091519	ENSGT00940000157805	ENSGT00390000012436.g	ENSGT00940000165343.c.b	ENSGT00940000157140.b.b.a	ENSGT01050000244887.A.a.a.a.j #22	ENSGT00390000005584	ENSGT00390000005605 #20	ENSGT00940000154819.a.b.c.a	ENSGT00940000156887.a #7	ENSGT00940000155603.B	ENSGT00940000154396.b.a.a.a	ENSGT01050000244879.a.b.e	ENSGT00940000156964.B	ENSGT00390000001244	ENSGT00940000156708.b	ENSGT00940000159355	ENSGT00940000158541	ENSGT00940000160081.c.b	ENSGT00940000158476.b	ENSGT00390000001390.a.b
Red-bellied piranha	MODERN SPECIES	114	ENSPNAG00000005086	ndel1b (ENSPNAG00000023401)	atp5pd (ENSPNAG00000023419)	SLC16A5 (ENSPNAG00000023433)	ENSPNAG00000023444	luc7l3 (ENSPNAG00000023459)	radil2a (ENSPNAG00000023548)	gcat (ENSPNAG00000023604)	mcm5 (ENSPNAG00000023704)	hmox1a (ENSPNAG00000023750)	foxred2 (ENSPNAG00000023787)	ankrd54 (ENSPNAG00000023810)	hmgxb4a (ENSPNAG00000023830)	si:dkeyp-69e1.8 (ENSPNAG00000023855)	ENSPNAG00000003795	s1pr5a (ENSPNAG00000023881) #22	spc24 (ENSPNAG00000023892)	kri1 (ENSPNAG00000023903) #20	ldlra (ENSPNAG00000024016)	smarca4a (ENSPNAG00000024136) #7	ENSPNAG00000024161	rln3a (ENSPNAG00000003813)	rfx1a (ENSPNAG00000024242)	GRIN2C (ENSPNAG00000005556)	TMEM104 (ENSPNAG00000024346)	ENSPNAG00000024491	ENSPNAG00000024526	ENSPNAG00000024556	tbc1d16 (ENSPNAG00000024605)	cbx4 (ENSPNAG00000024618)	cbx8a (ENSPNAG00000024649)
Mexicana tetra	MODERN SPECIES	11	SLC16A5 (ENSAMXG00000037665)	atp5pd (ENSAMXG00000038134)	ENSAMXG00000032828	luc7l3 (ENSAMXG00000020856)	radil2a (ENSAMXG00000020871)	ENSAMXG00000032039	gcat (ENSAMXG00000020893)	mcm5 (ENSAMXG00000034157)	hmox1a (ENSAMXG00000042453)	foxred2 (ENSAMXG00000020917)	ankrd54 (ENSAMXG00000020927)	hmgxb4a (ENSAMXG00000030681)	ENSAMXG00000031937	si:dkeyp-69e1.8 (ENSAMXG00000029085)	ENSAMXG00000038286	s1pr5a (ENSAMXG00000025307) #22	spc24 (ENSAMXG00000041119)	kri1 (ENSAMXG00000031825) #20	ldlra (ENSAMXG00000034717)	smarca4a (ENSAMXG00000021023) #7	ENSAMXG00000042598	rln3a (ENSAMXG00000034611)	rfx1a (ENSAMXG00000021077)	GRIN2C (ENSAMXG00000039510)	TMEM104 (ENSAMXG00000025606)	ENSAMXG00000010246	GAA (ENSAMXG00000031791)	tbc1d16 (ENSAMXG00000041524)	cbx4 (ENSAMXG00000035979)	ENSAMXG00000043344	ENSAMXG00000035064
Electric eel	MODERN SPECIES	68	tlk2 (ENSEEEG00000008141)	ENSEEEG00000008125	MRC2 (ENSEEEG00000008106)	rnd2 (ENSEEEG00000008091)	ENSEEEG00000008082	luc7l3 (ENSEEEG00000008078)	radil2a (ENSEEEG00000008073)	gcat (ENSEEEG00000008048)	mcm5 (ENSEEEG00000008042)	hmox1a (ENSEEEG00000008040)	foxred2 (ENSEEEG00000008035)	ankrd54 (ENSEEEG00000008033)	hmgxb4a (ENSEEEG00000008031)	si:dkeyp-69e1.8 (ENSEEEG00000008030)	foxd7 (ENSEEEG00000008029)	s1pr5a (ENSEEEG00000008028) #22	spc24 (ENSEEEG00000008027)	kri1 (ENSEEEG00000008024) #20	ldlra (ENSEEEG00000008019)	smarca4a (ENSEEEG00000005959) #7	ENSEEEG00000005861	rln3a (ENSEEEG00000005857)	rfx1a (ENSEEEG00000005804)	GRIN2C (ENSEEEG00000005802)	TMEM104 (ENSEEEG00000005800)	ENSEEEG00000005610	GAA (ENSEEEG00000005594)	tbc1d16 (ENSEEEG00000005592)	cbx4 (ENSEEEG00000005589)	cbx8a (ENSEEEG00000005588)	ENSEEEG00000005585
Channel catfish	MODERN SPECIES	11	ndel1b (ENSIPUG00000004269)	ACSF2 (ENSIPUG00000004283)	SLC16A5 (ENSIPUG00000004300)	atp5pd (ENSIPUG00000004307)	sbk1 (ENSIPUG00000004379)	luc7l3 (ENSIPUG00000004396)	radil2a (ENSIPUG00000004427)	GCAT (ENSIPUG00000004446)	mcm5 (ENSIPUG00000004465)	hmox1 (ENSIPUG00000004527)	foxred2 (ENSIPUG00000004540)	ankrd54 (ENSIPUG00000004592)	HMGXB4 (ENSIPUG00000004613)	si:dkeyp-69e1.8 (ENSIPUG00000004642)	foxd7 (ENSIPUG00000004646)	s1pr5a (ENSIPUG00000004663) #22	spc24 (ENSIPUG00000004670)	tob1a (ENSIPUG00000004705)	spag9a (ENSIPUG00000004752)	tmem159 (ENSIPUG00000004969)	kdelr2a (ENSIPUG00000004993)	ENSIPUG00000005045	ndufb10 (ENSIPUG00000005055)	ENSIPUG00000005160	ENSIPUG00000005171	msrb1a (ENSIPUG00000005193)	hs3st6 (ENSIPUG00000005215)	Fahd1 (ENSIPUG00000005222)	hagh (ENSIPUG00000005230)	narfl (ENSIPUG00000005263)	haghl (ENSIPUG00000005298)
Cyprinoidei	ANCESTRAL SPECIES	77	ENSGT00530000063753.B.c	ENSGT00440000038745.a.a.a	ENSGT00390000010047.g.a	ENSGT00530000063753.A.b	ENSGT00530000063599.A	ENSGT00440000038745.a.a.b	ENSGT00940000156865.b	ENSGT00940000155729.s.a	ENSGT01050000244824.G	ENSGT00390000017673.b.l	ENSGT00640000091519	ENSGT00940000157805	ENSGT00390000012436.g	ENSGT00940000165343.c.b	ENSGT00940000157140.b.b.b	ENSGT01050000244887.A.a.a.a.j #22	ENSGT00390000005584	ENSGT00390000005605 #20	ENSGT00940000154819.a.b.c.a	ENSGT00940000156887.a #7	ENSGT00940000155603.B	ENSGT00940000154396.b.a.a.a	ENSGT01050000244879.a.b.e	ENSGT00940000156964.B	ENSGT00390000001244	ENSGT00940000156708.b	ENSGT00940000159355.c	ENSGT00940000158541	ENSGT00940000160081.c.b	ENSGT00940000158476.b	ENSGT00940000165638.a.a
Cyprininae	DUPLICATION
Cyprininae	ANCESTRAL SPECIES	73	ENSGT00940000154272.B.b.b	ENSGT00940000158772.b.a	ENSGT00940000153882.a.b.a.j.a	ENSGT00530000063753.A.b.b	ENSGT00530000063599.A.f	ENSGT00440000038745.a.a.b.g.b	ENSGT00940000156865.b.b	ENSGT00940000155729.s.a	ENSGT01050000244824.G.g	ENSGT00390000017673.b.l.c	ENSGT00640000091519.d	ENSGT00940000157805.b	ENSGT00390000012436.g.a	ENSGT00940000165343.c.b.a.b	ENSGT00940000157140.b.b.b.f	ENSGT01050000244887.A.a.a.a.j.a #22	ENSGT00390000005584	ENSGT00390000005605 #20	ENSGT00940000154819.a.b.c.a.b	ENSGT00940000156887.a.b #7	ENSGT00940000155603.B.a	ENSGT00940000154396.b.a.a.a.c	ENSGT01050000244879.a.b.e.f	ENSGT00940000156964.B.b	ENSGT00390000001244.d	ENSGT00940000156708.b.b	ENSGT00940000158541.b	ENSGT00940000160081.c.b.a	ENSGT00940000158476.b.a	ENSGT00940000165638.a.a.a	ENSGT00940000156201.a.b.a.a
Goldfish	MODERN SPECIES	22	srl (ENSCARG00000063117)	ADCY9 (ENSCARG00000063133)	ENSCARG00000063146	snrnp25 (ENSCARG00000063166)	polr3k (ENSCARG00000063185)	cdip1 (ENSCARG00000063212)	ENSCARG00000063219 #27	zgc:171844 (ENSCARG00000007326)	tom1 (ENSCARG00000007345)	gcat (ENSCARG00000007389)	mcm5 (ENSCARG00000007468)	hmox1a (ENSCARG00000007675)	ankrd54 (ENSCARG00000007691)	hmgxb4a (ENSCARG00000007705)	foxd7 (ENSCARG00000007735)	s1pr5a (ENSCARG00000007740) #22	spc24 (ENSCARG00000007745)	kri1 (ENSCARG00000007775) #20	ldlra (ENSCARG00000007959)	smarca4a (ENSCARG00000008929) #7	rln3a (ENSCARG00000009010)	rfx1a (ENSCARG00000009027)	GRIN2C (ENSCARG00000009070)	TMEM104 (ENSCARG00000009121)	tnpo2a (ENSCARG00000009157)	cbx4 (ENSCARG00000009243)	cbx8a (ENSCARG00000009252)	aqp8b (ENSCARG00000009266)	ENSCARG00000009381	slc5a11 (ENSCARG00000009864)	GRID2IP (ENSCARG00000009870)
Cyprininae_a	ANCESTRAL SPECIES	93	ENSGT00940000158772.b.a	ENSGT00940000153882.a.b.a.j.a	ENSGT00530000063753.A.b.b	ENSGT00530000063599.A.f	ENSGT00440000038745.a.a.b.g.b	ENSGT00940000156865.b.b	ENSGT01050000244824.G.g	ENSGT00390000017673.b.l.c	ENSGT00640000091519.d	ENSGT00940000157805.b	ENSGT00390000012436.g.a	ENSGT00940000165343.c.b.a.b	ENSGT00940000157140.b.b.b.f	ENSGT00390000005584	ENSGT00390000005605.d #20	ENSGT01050000244887.A.a.a.a.j.a #22	ENSGT00940000154819.a.b.c.a.b	ENSGT00400000024875.d.e	ENSGT00940000156887.a.b #7	ENSGT00940000155603.B.a	ENSGT00940000154396.b.a.a.a.c	ENSGT01050000244879.a.b.e.f	ENSGT00940000156964.B.b	ENSGT00390000001244.d	ENSGT00940000156708.b.b	ENSGT00940000158541.b	ENSGT00940000160081.c.b.a	ENSGT00940000158476.b.a	ENSGT00940000165638.a.a.a	ENSGT00940000156201.a.b.a.a	ENSGT00940000157690
Common carp reference	MODERN SPECIES	3	grb2b (ENSCCRG00000012723)	ENSCCRG00000071516	ENSCCRG00000057714	ntn1b (ENSCCRG00000042266)	ENSCCRG00000064846	mfsd6l (ENSCCRG00000054768)	zgc:171844 (ENSCCRG00000000941)	tom1 (ENSCCRG00000000946)	mcm5 (ENSCCRG00000000956)	gcat (ENSCCRG00000071612)	ENSCCRG00000056915	hmgxb4a (ENSCCRG00000001001)	ENSCCRG00000059448	foxd7 (ENSCCRG00000076821)	kri1 (ENSCCRG00000057189) #20	s1pr5a (ENSCCRG00000077475) #22	ldlra (ENSCCRG00000005451)	ENSCCRG00000005753	smarca4a (ENSCCRG00000005852) #7	ENSCCRG00000016343	rln3a (ENSCCRG00000016377)	rfx1a (ENSCCRG00000016380)	ENSCCRG00000016386	ENSCCRG00000016400	tnpo2a (ENSCCRG00000016423)	tbc1d16 (ENSCCRG00000074539)	tbc1d16 (ENSCCRG00000047509)	cbx4 (ENSCCRG00000058350)	ENSCCRG00000036111	cbx8a (ENSCCRG00000073016)	aqp8b (ENSCCRG00000039607)
Golden-line barbel	MODERN SPECIES	3101																s1pr5a (ENSSGRG00000001564) #22	ENSSGRG00000001561
Cyprininae	ANCESTRAL SPECIES	56	ENSGT00940000160534.k	ENSGT00950000183197.a.c	ENSGT00940000156447.a.b.f	ENSGT00940000159871.b.a.a.c.b	ENSGT00950000182860.a.a.a.ub.a.e	ENSGT00510000050089.b.d	ENSGT01030000235499.B	ENSGT00940000155729.s.b	ENSGT01050000244824.G.h	ENSGT00390000017673.b.l.d	ENSGT00640000091519.c	ENSGT00940000157805.a.a	ENSGT00390000012436.g.b	ENSGT00940000165343.c.b.a.a	ENSGT00940000157140.b.b.b.e	ENSGT01050000244887.A.a.a.a.j.b #22	ENSGT00940000154819.a.b.c.a.a	ENSGT00940000156887.a.a #7	ENSGT00940000155603.B.b	ENSGT00940000154396.b.a.a.a.d	ENSGT01050000244879.a.b.e.e	ENSGT00940000156964.B.a	ENSGT00390000001244.c	ENSGT00940000156708.b.a.b	ENSGT00940000159355.c	ENSGT00940000158541.a	ENSGT00940000160081.c.b.b	ENSGT00940000158476.b.b	ENSGT00940000165638.a.a.b	ENSGT00940000156201.a.b.a.b	ENSGT00940000157625.a.a.a
Goldfish	MODERN SPECIES	20	cyb561 (ENSCARG00000022124)	TANC2 (ENSCARG00000020476)	ENSCARG00000020374	ENSCARG00000020339	ifnphi1 (ENSCARG00000020317)	ENSCARG00000020280	ENSCARG00000020258	GCAT (ENSCARG00000020146)	mcm5 (ENSCARG00000019928)	hmox1a (ENSCARG00000019905)	foxred2 (ENSCARG00000019900)	ankrd54 (ENSCARG00000019881)	hmgxb4a (ENSCARG00000019870)	si:dkeyp-69e1.8 (ENSCARG00000019866)	foxd7 (ENSCARG00000019863)	s1pr5a (ENSCARG00000019861) #22	ENSCARG00000019840	spc24 (ENSCARG00000019829)	ldlra (ENSCARG00000017938)	smarca4a (ENSCARG00000017563) #7	ENSCARG00000017413	rln3a (ENSCARG00000017398)	rfx1a (ENSCARG00000017113)	GRIN2C (ENSCARG00000017054)	TMEM104 (ENSCARG00000017021)	tnpo2a (ENSCARG00000016894)	GAA (ENSCARG00000016425)	tbc1d16 (ENSCARG00000016367)	cbx4 (ENSCARG00000016344)	cbx8a (ENSCARG00000016326)	ENSCARG00000015792
Cyprininae_a	ANCESTRAL SPECIES	12	ENSGT00940000160534.k	ENSGT00950000183197.a.c	ENSGT00940000156447.a.b.f	ENSGT00940000159871.b.a.a.c.b	ENSGT00950000182860.a.a.a.ub.a.e	ENSGT00510000050089.b.d	ENSGT01030000235499.B	ENSGT00940000155729.s.b	ENSGT01050000244824.G.h	ENSGT00390000017673.b.l.d	ENSGT00640000091519.c	ENSGT00940000157805.a.a	ENSGT01030000234881.d	ENSGT00940000165343.c.b.a.a	ENSGT00940000157140.b.b.b.e	ENSGT01050000244887.A.a.a.a.j.b #22	ENSGT00390000005605.c #20	ENSGT00940000154819.a.b.c.a.a	ENSGT00940000156887.a.a #7	ENSGT00940000155603.B.b	ENSGT00940000154396.b.a.a.a.d	ENSGT01050000244879.a.b.e.e	ENSGT00940000156964.B.a	ENSGT00390000001244.c	ENSGT00940000156708.b.a.b	ENSGT00940000159355.c	ENSGT00940000158541.a	ENSGT00940000160081.c.b.b	ENSGT00940000158476.b.b	ENSGT00940000165638.a.a.b	ENSGT00940000156201.a.b.a.b
Common carp reference	MODERN SPECIES	1	ENSCCRG00000022651	ENSCCRG00000022661	ifnphi1 (ENSCCRG00000022671)	ENSCCRG00000022659	ENSCCRG00000022684	ifnphi1 (ENSCCRG00000023842)	ENSCCRG00000067475	ENSCCRG00000063496	mcm5 (ENSCCRG00000000832)	hmox1a (ENSCCRG00000071293)	foxred2 (ENSCCRG00000004995)	ankrd54 (ENSCCRG00000005008)	ENSCCRG00000064452	si:dkeyp-69e1.8 (ENSCCRG00000056356)	ENSCCRG00000078920	s1pr5a (ENSCCRG00000078650) #22	ENSCCRG00000005420	kri1 (ENSCCRG00000005433) #20	ldlra (ENSCCRG00000040492)	ENSCCRG00000071569	smarca4a (ENSCCRG00000001090) #7	ENSCCRG00000024491	rln3a (ENSCCRG00000024488)	rfx1a (ENSCCRG00000051836)	ENSCCRG00000036592	ENSCCRG00000033769	tnpo2a (ENSCCRG00000036218)	ENSCCRG00000036192	ENSCCRG00000076899	tbc1d16 (ENSCCRG00000036164)	cbx4 (ENSCCRG00000067339)
Golden-line barbel	MODERN SPECIES	3265																s1pr5a (ENSSGRG00000006220) #22
Zebrafish	MODERN SPECIES	18	tmub2 (ENSDARG00000056467)	asb16 (ENSDARG00000056468)	vat1 (ENSDARG00000056481)	rnd2 (ENSDARG00000070735)	MRC2 (ENSDARG00000078135)	tlk2 (ENSDARG00000010779)	mettl2a (ENSDARG00000008105)	itgb3a (ENSDARG00000056767)	rprml (ENSDARG00000056768)	zgc:163079 (ENSDARG00000056773)	ENSDARG00000101956	ENSDARG00000101990	ENSDARG00000031534	pde6ga (ENSDARG00000056791)	zgc:123297 (ENSDARG00000056798)	s1pr5a (ENSDARG00000040526) #22	spc24 (ENSDARG00000093622)	kri1 (ENSDARG00000075380) #20	ldlra (ENSDARG00000029476)	smarca4a (ENSDARG00000077226) #7	ENSDARG00000074850	rln3a (ENSDARG00000070780)	rfx1a (ENSDARG00000005883)	GRIN2C (ENSDARG00000078149)	si:ch211-198m1.1 (ENSDARG00000093192)	TMEM104 (ENSDARG00000088560)	tnpo2a (ENSDARG00000038239)	msrb1a (ENSDARG00000025436)	fahd1 (ENSDARG00000031657)	hagh (ENSDARG00000025338)	narfl (ENSDARG00000062216)
Euteleosteomorpha	ANCESTRAL SPECIES		ENSGT00940000154830.c	ENSGT00940000155738	ENSGT00940000154272.B.b	ENSGT00940000158772.b	ENSGT00940000156865.b	ENSGT00940000155729	ENSGT00940000172325	ENSGT01050000244824.G	ENSGT00390000017673.b.l	ENSGT00640000091519	ENSGT00940000157805	ENSGT01030000234881	ENSGT00390000012436.g	ENSGT00940000165343.c.b	ENSGT00940000157140.b.b.b	ENSGT01050000244887.A.a.a.a.j #22	ENSGT00390000005584	ENSGT00390000005605 #20	ENSGT00940000154819.a.b.c.a	ENSGT00940000156887.a #7	ENSGT00530000063000.a.a.b.i #21	ENSGT00940000157700.d	ENSGT00950000183144.B	ENSGT00940000154277.b.b.b	ENSGT00940000161195.a.a	ENSGT00940000160152	ENSGT00390000012267	ENSGT00940000155858.e	ENSGT00550000075117.m.b	ENSGT00940000155632.o	ENSGT00530000064086
Protacanthopterygii	ANCESTRAL SPECIES	8	ENSGT00530000063753.B.d	ENSGT00530000063753.A.b	ENSGT00530000063599.A	ENSGT00440000038745.a.a.b	ENSGT00940000156865.b	ENSGT00940000155729.r	ENSGT01050000244824.G	ENSGT00390000017673.b.l	ENSGT00640000091519	ENSGT00940000157805	ENSGT00390000012436.g	ENSGT00940000165343.c.b	ENSGT00940000157140.b.b.b	ENSGT00470000042444 #30	ENSGT00940000161143 #29	ENSGT01050000244887.A.a.a.a.j #22	ENSGT00390000005584	ENSGT00390000005605 #20	ENSGT00940000154819.a.b.c.a	ENSGT00940000156887.a #7	ENSGT00530000063000.a.a.b.i #21	ENSGT00940000157700.d	ENSGT00950000183144.B	ENSGT00940000154277.b.b.b	ENSGT00940000155828	ENSGT00940000161195.a.a	ENSGT00940000160152	ENSGT00390000012267.e	ENSGT00940000155858.e	ENSGT00390000000159	ENSGT00950000183099.b
Salmoninae	ANCESTRAL SPECIES		ENSGT00530000063753.B.d.d	ENSGT00530000063753.A.b.d	ENSGT00530000063599.A	ENSGT00440000038745.a.a.b	ENSGT00940000156865.b	ENSGT00940000155729.r.a.a	ENSGT01050000244824.G.k	ENSGT00390000017673.b.l.b	ENSGT00640000091519	ENSGT00940000157805	ENSGT00390000012436.g.f	ENSGT00940000165343.c.b.d	ENSGT00940000157140.b.b.b.c.b	ENSGT01030000234940.h.a	ENSGT00990000210763	ENSGT01050000244887.A.a.a.a.j #22	ENSGT00390000005584.a.a	ENSGT00390000005605.f #20	ENSGT00940000154819.a.b.c.a.g	ENSGT00940000156887.a.e #7	ENSGT00950000182923.A.ib.a.a	ENSGT00530000063000.a.a.b.i.c.b #21	ENSGT00940000157700.d.b	ENSGT00940000156887.a.f.a #7	ENSGT00950000182923.A.ib.a.b	ENSGT00530000063000.a.a.b.i.c.a #21	ENSGT00940000157700.d.a.b	ENSGT00950000183144.B.ab	ENSGT00940000154277.b.b.b.b	ENSGT00940000161195.a.a.f	ENSGT00940000160152.k
Salmoninae_a	DUPLICATION
Salmoninae_a	ANCESTRAL SPECIES	195									ENSGT00390000017673.b.l.b.b	ENSGT00640000091519.f	ENSGT00940000157805.g	ENSGT00390000012436.g.e	ENSGT00940000165343.c.b.c	ENSGT00940000157140.b.b.b.c.b	ENSGT01030000234940.h.a	ENSGT01050000244887.A.a.a.a.j.c #22	ENSGT00390000005584.a.a	ENSGT00390000005605.f #20	ENSGT00940000154819.a.b.c.a.h
Salmo	ANCESTRAL SPECIES	69	ENSGT00940000158772.b.l	ENSGT00940000157016.f	ENSGT00940000153882.a.b.a.b.c	ENSGT00530000063753.B.d.d	ENSGT00530000063753.A.b.d	ENSGT00530000063599.A.g	ENSGT00440000038745.a.a.b.a	ENSGT00940000156865.b.h	ENSGT00940000155729.r.a.b	ENSGT01050000244824.G.k.c	ENSGT00390000017673.b.l.a	ENSGT00640000091519.f	ENSGT00940000157805.g	ENSGT00390000012436.g.f.b	ENSGT00940000160757.k	ENSGT01050000244887.A.a.a.a.j.c #22	ENSGT00390000005605.f #20	ENSGT00940000154819.a.b.c.a.h	ENSGT00940000156887.a.e.b #7	ENSGT00530000063000.a.a.b.i.c.b #21	ENSGT00940000157700.d.b	ENSGT00950000183144.B.`b	ENSGT00940000154277.b.b.b.b.b	ENSGT00940000161195.a.a.f	ENSGT00940000160152.k.b	ENSGT00390000012267.e.b.a	ENSGT00940000155858.e.f	ENSGT00940000155632.o.d	ENSGT00530000064086.ab	ENSGT00940000165172.a.f.b	ENSGT00940000154912.u.a.c
Atlantic salmon	MODERN SPECIES	22	ENSSSAG00000070957	ntn1b (ENSSSAG00000070934)	ENSSSAG00000089137	ENSSSAG00000070894	ENSSSAG00000100063	zgc:171844 (ENSSSAG00000070861)	tom1 (ENSSSAG00000091826)	gcat (ENSSSAG00000070799)	mcm5 (ENSSSAG00000040979)	hmox1a (ENSSSAG00000070727)	foxred2 (ENSSSAG00000070717)	hmgxb4a (ENSSSAG00000026951)	si:dkeyp-69e1.8 (ENSSSAG00000070767)	mip2a (ENSSSAG00000070770)	ENSSSAG00000006510	s1pr5a (ENSSSAG00000089324) #22	kri1 (ENSSSAG00000070681) #20	ldlra (ENSSSAG00000069976)	smarca4a (ENSSSAG00000069499) #7	ENSSSAG00000085374 #21	MAST1 (ENSSSAG00000068180)	rtbdn (ENSSSAG00000001518)	ENSSSAG00000117056	junbb (ENSSSAG00000084114)	HOOK2 (ENSSSAG00000009349)	trir (ENSSSAG00000102091)	ubn2b (ENSSSAG00000067711)	ENSSSAG00000067676	ENSSSAG00000116040	ENSSSAG00000092859	ENSSSAG00000084151
River trout	MODERN SPECIES	25	PIK3R5 (ENSSTUG00000005105)	PIK3R6 (ENSSTUG00000005023)	mfsd6l (ENSSTUG00000005014)	zgc:171844 (ENSSTUG00000004996)	tom1 (ENSSTUG00000004954)	gcat (ENSSTUG00000004921)	mcm5 (ENSSTUG00000004887)	hmox1a (ENSSTUG00000004862)	foxred2 (ENSSTUG00000004843)	ankrd54 (ENSSTUG00000004828)	hmgxb4a (ENSSTUG00000004802)	si:dkeyp-69e1.8 (ENSSTUG00000004797)	foxd7 (ENSSTUG00000004790)	ENSSTUG00000004785	ENSSTUG00000004778	s1pr5a (ENSSTUG00000004772) #22	spc24 (ENSSTUG00000004767)	kri1 (ENSSTUG00000004737) #20	ldlra (ENSSTUG00000004443)	smarca4a (ENSSTUG00000003900) #7	ATG4D (ENSSTUG00000019419) #21	MAST1 (ENSSTUG00000018719)	rtbdn (ENSSTUG00000018684)	ENSSTUG00000018679	junbb (ENSSTUG00000018671)	ENSSTUG00000018644	HOOK2 (ENSSTUG00000017625)	trir (ENSSTUG00000017553)	ubn2b (ENSSTUG00000017508)	ENSSTUG00000017497	SLC25A38 (ENSSTUG00000017494)
Oncorhynchus	ANCESTRAL SPECIES	172															ENSGT00940000160757.m.b	ENSGT01050000244887.A.a.a.a.j.c #22	ENSGT00390000005584.a.a	ENSGT00390000005605.f #20	ENSGT00940000154819.a.b.c.a.g.a	ENSGT00940000156887.a.e.d #7	ENSGT00940000156887.a.e.c.a.b #7	ENSGT00940000156887.a.f.a #7	ENSGT00950000182923.A.ib.a.b
Rainbow trout	MODERN SPECIES	3	PIK3R5 (ENSOMYG00000029423)	ENSOMYG00000029386	mfsd6l (ENSOMYG00000029377)	zgc:171844 (ENSOMYG00000029371)	tom1 (ENSOMYG00000029327)	ENSOMYG00000029268	mcm5 (ENSOMYG00000029221)	hmox1a (ENSOMYG00000029140)	ENSOMYG00000051884	foxred2 (ENSOMYG00000029047)	ankrd54 (ENSOMYG00000029023)	hmgxb4a (ENSOMYG00000029002)	si:dkeyp-69e1.8 (ENSOMYG00000028962)	foxd7 (ENSOMYG00000056670)	CXCL8 (ENSOMYG00000028934)	s1pr5a (ENSOMYG00000028915) #22	spc24 (ENSOMYG00000028907)	kri1 (ENSOMYG00000028885) #20	ldlra (ENSOMYG00000028150)	smarca4a (ENSOMYG00000027454) #7	ENSOMYG00000027277 #7	ENSOMYG00000027267	ENSOMYG00000027244 #21	MAST1 (ENSOMYG00000024088)	rtbdn (ENSOMYG00000023506)	ENSOMYG00000069568	junbb (ENSOMYG00000023473)	HOOK2 (ENSOMYG00000022731)	trir (ENSOMYG00000022503)	ubn2b (ENSOMYG00000022462)	ENSOMYG00000022207
Oncorhynchus_a	ANCESTRAL SPECIES	288															ENSGT00940000160757.m.b	ENSGT01050000244887.A.a.a.a.j.c #22	ENSGT00390000005584.a.a	ENSGT00390000005605.f #20	ENSGT00940000154819.a.b.c.a.g.a	ENSGT00940000156887.a.e.d #7	ENSGT00950000182923.A.ib.a.b
Chinook salmon	DUPLICATION
Chinook salmon	MODERN SPECIES	71	ntn1b (ENSOTSG00005038362)	PIK3R5 (ENSOTSG00005038359)	ENSOTSG00005038358	mfsd6l (ENSOTSG00005038357)	zgc:171844 (ENSOTSG00005038356)	tom1 (ENSOTSG00005038355)	GCAT (ENSOTSG00005038354)	mcm5 (ENSOTSG00005038299)	hmox1a (ENSOTSG00005038296)	foxred2 (ENSOTSG00005038294)	ankrd54 (ENSOTSG00005038293)	hmgxb4a (ENSOTSG00005038292)	si:dkeyp-69e1.8 (ENSOTSG00005038290)	ENSOTSG00005038287	ENSOTSG00005038285	s1pr5a (ENSOTSG00005038283) #22	spc24 (ENSOTSG00005038282)	kri1 (ENSOTSG00005038278) #20	ldlra (ENSOTSG00005037915)	ENSOTSG00005037904 #7	pgbd5 (ENSOTSG00005037903)	cog2 (ENSOTSG00005037533)	ENSOTSG00005037524	sf3b5 (ENSOTSG00005037520)	oprm1 (ENSOTSG00005037517)	rgs17 (ENSOTSG00005037515)	ENSOTSG00005037503	ENSOTSG00005037498	olig3 (ENSOTSG00005037496)	TNFAIP3 (ENSOTSG00005037494)	perp (ENSOTSG00005037493)
Chinook salmon	MODERN SPECIES	67	PIK3R5 (ENSOTSG00005026546)	ENSOTSG00005026548	mfsd6l (ENSOTSG00005026549)	zgc:171844 (ENSOTSG00005026550)	tom1 (ENSOTSG00005026554)	GCAT (ENSOTSG00005026557)	mcm5 (ENSOTSG00005026560)	hmox1a (ENSOTSG00005026589)	foxred2 (ENSOTSG00005026591)	ankrd54 (ENSOTSG00005026592)	hmgxb4a (ENSOTSG00005026593)	si:dkeyp-69e1.8 (ENSOTSG00005026594)	foxd7 (ENSOTSG00005026595)	ENSOTSG00005026596	ENSOTSG00005026597	s1pr5a (ENSOTSG00005026600) #22	spc24 (ENSOTSG00005026601)	kri1 (ENSOTSG00005033397) #20	ldlra (ENSOTSG00005033419)	ENSOTSG00005034002 #7
Coho salmon	MODERN SPECIES	26	ENSOKIG00005018364	mfsd6l (ENSOKIG00005018356)	zgc:171844 (ENSOKIG00005018348)	tom1 (ENSOKIG00005018334)	mcm5 (ENSOKIG00005018292)	hmox1a (ENSOKIG00005018274)	foxred2 (ENSOKIG00005018222)	ankrd54 (ENSOKIG00005018189)	hmgxb4a (ENSOKIG00005018178)	si:dkeyp-69e1.8 (ENSOKIG00005018169)	foxd7 (ENSOKIG00005018155)	ENSOKIG00005018149	ENSOKIG00005018132	ENSOKIG00005018117	ENSOKIG00005018100	s1pr5a (ENSOKIG00005018093) #22	spc24 (ENSOKIG00005018079)	kri1 (ENSOKIG00005018066) #20	ldlra (ENSOKIG00005017598)	ENSOKIG00005017571	smarca4a (ENSOKIG00005017216) #7	ENSOKIG00005017153	ATG4D (ENSOKIG00005017147) #21	MAST1 (ENSOKIG00005015826)	rtbdn (ENSOKIG00005015720)	ENSOKIG00005015705	junbb (ENSOKIG00005015699)	HOOK2 (ENSOKIG00005015416)	trir (ENSOKIG00005015385)	ubn2b (ENSOKIG00005015236)	TTC26 (ENSOKIG00005014788)
Salmoninae_a	ANCESTRAL SPECIES	37	ENSGT00530000063753.B.d.d	ENSGT00530000063753.A.b.d	ENSGT00530000063599.A.g	ENSGT00440000038745.a.a.b.a	ENSGT00940000156865.b	ENSGT00940000155729.r.a.a	ENSGT01050000244824.G.k	ENSGT00390000017673.b.l.b.a	ENSGT00640000091519.e	ENSGT00940000157805.h	ENSGT00390000012436.g.f	ENSGT00940000165343.c.b.d	ENSGT00940000157140.b.b.b.c.a	ENSGT00940000160757	ENSGT00990000210763	ENSGT01050000244887.A.a.a.a.j.d #22	ENSGT00390000005584.a.b	ENSGT00390000005605.e #20	ENSGT00940000154819.a.b.c.a.g	ENSGT00940000156887.a.e #7	ENSGT00950000182923.A.ib.a.a	ENSGT00530000063000.a.a.b.i.c.b #21	ENSGT00940000157700.d.b	ENSGT00940000156887.a.f.a #7	ENSGT00950000182923.A.ib.a.b	ENSGT00530000063000.a.a.b.i.c.a #21	ENSGT00940000157700.d.a.b	ENSGT00950000183144.B.ab	ENSGT00940000154277.b.b.b.b.a	ENSGT00940000154277.b.b.b.a	ENSGT00940000161195.a.a.f
Salmo	ANCESTRAL SPECIES	53	ENSGT00940000153882.a.b.a.b.d	ENSGT00530000063753.B.d.c	ENSGT00530000063753.A.b.c	ENSGT00530000063599.A.h	ENSGT00440000038745.a.a.b.b	ENSGT00940000156865.b.g	ENSGT00940000155729.r.a.a	ENSGT01050000244824.G.k.d	ENSGT00390000017673.b.l.b.a	ENSGT00640000091519.e	ENSGT00390000012436.g.f.a	ENSGT00940000165343.c.b.d	ENSGT00940000157140.b.b.b.c.a	ENSGT00940000160757.l	ENSGT00990000210763	ENSGT01050000244887.A.a.a.a.j.d #22	ENSGT00390000005584.b	ENSGT00390000005605.e #20	ENSGT00940000154819.a.b.c.a.g	ENSGT00940000156887.a.e.a #7	ENSGT00950000182923.A.ib.a.a	ENSGT00530000063000.a.a.b.i.c.a #21	ENSGT00940000157700.d.a.a	ENSGT00950000183144.B.ab	ENSGT00940000154277.b.b.b.b.a	ENSGT00940000161195.a.a.e	ENSGT00940000160152.k.a	ENSGT00390000012267.e.b.b	ENSGT00940000155858.e.e	ENSGT00390000000159.i.a	ENSGT00950000183099.a.b
Atlantic salmon	MODERN SPECIES	25	ENSSSAG00000009617	ntn1b (ENSSSAG00000075407)	PIK3R5 (ENSSSAG00000005939)	ENSSSAG00000005952	zgc:171844 (ENSSSAG00000110747)	tom1 (ENSSSAG00000099257)	gcat (ENSSSAG00000004922)	mcm5 (ENSSSAG00000005359)	HMOX (ENSSSAG00000006231)	foxred2 (ENSSSAG00000006269)	hmgxb4a (ENSSSAG00000006466)	si:dkeyp-69e1.8 (ENSSSAG00000006481)	foxd7 (ENSSSAG00000105207)	il8 (ENSSSAG00000006498)	ENSSSAG00000006518	s1pr5a (ENSSSAG00000121767) #22	kri1 (ENSSSAG00000005024) #20	ldlra (ENSSSAG00000005295)	smarca4a (ENSSSAG00000096866) #7	ENSSSAG00000008548	ENSSSAG00000008557 #21	MAST1 (ENSSSAG00000008779)	rbp (ENSSSAG00000108597)	ENSSSAG00000059068	junbb (ENSSSAG00000084145)	HOOK2 (ENSSSAG00000067743)	ubn2b (ENSSSAG00000037952)	ENSSSAG00000039421	ENSSSAG00000041429	ENSSSAG00000109013	ENSSSAG00000041571
River trout	MODERN SPECIES		ENSSTUG00000013256	ENSSTUG00000013230	mfsd6l (ENSSTUG00000013226)	zgc:171844 (ENSSTUG00000013217)	tom1 (ENSSTUG00000013164)	gcat (ENSSTUG00000012850)	mcm5 (ENSSTUG00000012738)	hmox1a (ENSSTUG00000012728)	ENSSTUG00000012711	ankrd54 (ENSSTUG00000012695)	hmgxb4a (ENSSTUG00000012674)	si:dkeyp-69e1.8 (ENSSTUG00000012665)	foxd7 (ENSSTUG00000012658)	ENSSTUG00000012638	ENSSTUG00000012498	s1pr5a (ENSSTUG00000012490) #22	spc24 (ENSSTUG00000012473)	kri1 (ENSSTUG00000012419) #20	ldlra (ENSSTUG00000012337)	smarca4a (ENSSTUG00000004756) #7	ENSSTUG00000004499	ATG4D (ENSSTUG00000004457) #21	MAST1 (ENSSTUG00000003591)	rtbdn (ENSSTUG00000003533)	ENSSTUG00000003523	junbb (ENSSTUG00000003514)	HOOK2 (ENSSTUG00000003162)	trir (ENSSTUG00000003123)	ubn2b (ENSSTUG00000002990)	TTC26 (ENSSTUG00000002163)	rpsa (ENSSTUG00000002092)
Oncorhynchus	ANCESTRAL SPECIES	65	ENSGT00530000063753.B.d.c	ENSGT00530000063753.A.b.c	ENSGT00530000063599.A.h	ENSGT00440000038745.a.a.b.a.a.a.b	ENSGT00940000156865.b.f	ENSGT00940000155729.r.a.a	ENSGT01050000244824.G.k.a	ENSGT00390000017673.b.l.b.a	ENSGT00640000091519.f.a	ENSGT00940000157805.h	ENSGT00390000012436.g.f	ENSGT00940000165343.c.b.d	ENSGT00940000157140.b.b.b.c.a	ENSGT00940000160757.n	ENSGT00990000210763.a	ENSGT01050000244887.A.a.a.a.j.d #22	ENSGT00390000005584.a.b	ENSGT00390000005605.e #20	ENSGT00940000154819.a.b.c.a.g.b	ENSGT00940000156887.a.e.c.a.a #7	ENSGT00950000182923.A.ib.a.a	ENSGT00530000063000.a.a.b.i.c.b #21	ENSGT00940000157700.d.a.a	ENSGT00950000183144.B.`b	ENSGT00940000154277.b.b.b.b.a.a	ENSGT00940000155828	ENSGT00940000161195.a.a.e	ENSGT00940000160152.k.a	ENSGT00390000012267.f	ENSGT00940000160152.l	ENSGT00390000012267.e.a
Oncorhynchus_a	ANCESTRAL SPECIES	44	ENSGT00530000063753.A.b.c	ENSGT00530000063599.A.h	ENSGT00440000038745.a.a.b.b	ENSGT00440000038745.a.a.b.a.a.a.b	ENSGT00940000156865.b.f	ENSGT00940000155729.r.a.a	ENSGT01050000244824.G.k.a	ENSGT00390000017673.b.l.b.a	ENSGT00640000091519.f.a	ENSGT00940000157805.h	ENSGT00390000012436.g.f	ENSGT00940000165343.c.b.d	ENSGT00940000157140.b.b.b.c.a	ENSGT00940000160757.n	ENSGT00990000210763.a	ENSGT01050000244887.A.a.a.a.j.d #22	ENSGT00390000005584.a.b	ENSGT00390000005605.e #20	ENSGT00940000154819.a.b.c.a.g.b	ENSGT00940000156887.a.e.c.a.a #7	ENSGT00950000182923.A.ib.a.a	ENSGT00530000063000.a.a.b.i.c.b #21	ENSGT00940000157700.d.a.a	ENSGT00950000183144.B.`b	ENSGT00940000154277.b.b.b.b.a.a	ENSGT00940000155828	ENSGT00940000161195.a.a.e	ENSGT00940000160152.k.a	ENSGT00390000012267.f	ENSGT00940000155858.e.e	ENSGT00390000000159.i.a
Coho salmon	MODERN SPECIES	1	ENSOKIG00005014842	ENSOKIG00005014826	mfsd6l (ENSOKIG00005014808)	zgc:171844 (ENSOKIG00005014803)	tom1 (ENSOKIG00005014794)	gcat (ENSOKIG00005014637)	mcm5 (ENSOKIG00005014560)	hmox1a (ENSOKIG00005014543)	foxred2 (ENSOKIG00005014539)	ankrd54 (ENSOKIG00005014514)	hmgxb4a (ENSOKIG00005014505)	si:dkeyp-69e1.8 (ENSOKIG00005014497)	foxd7 (ENSOKIG00005014487)	ENSOKIG00005014478	ENSOKIG00005014394	s1pr5a (ENSOKIG00005022154) #22	spc24 (ENSOKIG00005022132)	kri1 (ENSOKIG00005022118) #20	ldlra (ENSOKIG00005022079)	smarca4a (ENSOKIG00005021743) #7	ENSOKIG00005021672	ATG4D (ENSOKIG00005021601) #21	MAST1 (ENSOKIG00005020950)	rtbdn (ENSOKIG00005020855)	PRDX2 (ENSOKIG00005020821)	junbb (ENSOKIG00005020817)	HOOK2 (ENSOKIG00005020304)	trir (ENSOKIG00005020242)	TTC26 (ENSOKIG00005019958)	ENSOKIG00005019727	slc25a38a (ENSOKIG00005019706)
Chinook salmon	MODERN SPECIES	2944	ENSOTSG00005045521	ENSOTSG00005045520	ENSOTSG00005045519	mfsd6l (ENSOTSG00005045518)	zgc:171844 (ENSOTSG00005045516)	tom1 (ENSOTSG00005045515)	gcat (ENSOTSG00005045509)	mcm5 (ENSOTSG00005045493)	hmox1a (ENSOTSG00005045492)	foxred2 (ENSOTSG00005045490)	ankrd54 (ENSOTSG00005045489)	hmgxb4a (ENSOTSG00005045488)	si:dkeyp-69e1.8 (ENSOTSG00005045486)	foxd7 (ENSOTSG00005045485)	ENSOTSG00005045484	s1pr5a (ENSOTSG00005045483) #22	spc24 (ENSOTSG00005045482)	kri1 (ENSOTSG00005045480) #20	ldlra (ENSOTSG00005045479)
Rainbow trout	MODERN SPECIES	4	ENSOMYG00000052090	ENSOMYG00000023105	mfsd6l (ENSOMYG00000070250)	zgc:171844 (ENSOMYG00000023053)	tom1 (ENSOMYG00000023003)	gcat (ENSOMYG00000022783)	mcm5 (ENSOMYG00000022528)	hmox1a (ENSOMYG00000022498)	ENSOMYG00000022488	ankrd54 (ENSOMYG00000022483)	hmgxb4a (ENSOMYG00000022467)	si:dkeyp-69e1.8 (ENSOMYG00000022458)	foxd7 (ENSOMYG00000022453)	il-8 (ENSOMYG00000022444)	ENSOMYG00000022433	s1pr5a (ENSOMYG00000022427) #22	spc24 (ENSOMYG00000022421)	kri1 (ENSOMYG00000022391) #20	ENSOMYG00000067083 #20	ldlra (ENSOMYG00000021575)	smarca4a (ENSOMYG00000021175) #7	ENSOMYG00000021049	ENSOMYG00000021036 #21	ENSOMYG00000053440	MAST1 (ENSOMYG00000020896)	rtbdn (ENSOMYG00000020840)	ENSOMYG00000020832	junbb (ENSOMYG00000020826)	ENSOMYG00000068385	HOOK2 (ENSOMYG00000020139)	trir (ENSOMYG00000020022)
Huchen	DUPLICATION
Huchen	MODERN SPECIES	953														ENSHHUG00000017310	ENSHHUG00000017362	s1pr5a (ENSHHUG00000017377) #22	spc24 (ENSHHUG00000017386)	kri1 (ENSHHUG00000017399) #20	ldlra (ENSHHUG00000017448)	smarca4a (ENSHHUG00000018463) #7	ENSHHUG00000018512	ATG4D (ENSHHUG00000018522) #21	ENSHHUG00000018532	ENSHHUG00000018535	ENSHHUG00000018544	ENSHHUG00000018546	rtbdn (ENSHHUG00000018556)	ENSHHUG00000018569	junbb (ENSHHUG00000018764)	HOOK2 (ENSHHUG00000018768)	trir (ENSHHUG00000018821)
Huchen	MODERN SPECIES	317	ntn1b (ENSHHUG00000039945)	PIK3R5 (ENSHHUG00000039925)	PIK3R6 (ENSHHUG00000039910)	mfsd6l (ENSHHUG00000039905)	zgc:171844 (ENSHHUG00000039893)	tom1 (ENSHHUG00000039854)	gcat (ENSHHUG00000039789)	mcm5 (ENSHHUG00000039650)	hmox1a (ENSHHUG00000039640)	foxred2 (ENSHHUG00000039634)	ankrd54 (ENSHHUG00000039611)	hmgxb4a (ENSHHUG00000039598)	si:dkeyp-69e1.8 (ENSHHUG00000039593)	foxd7 (ENSHHUG00000039586)	ENSHHUG00000039565	s1pr5a (ENSHHUG00000039562) #22	spc24 (ENSHHUG00000039554)	kri1 (ENSHHUG00000039523) #20	ldlra (ENSHHUG00000039243)	smarca4a (ENSHHUG00000039198) #7	ENSHHUG00000039187 #7	ENSHHUG00000039166	ATG4D (ENSHHUG00000039142) #21	ENSHHUG00000039134	MAST1 (ENSHHUG00000039044)	rtbdn (ENSHHUG00000039030)	ENSHHUG00000039023	junbb (ENSHHUG00000039017)	HOOK2 (ENSHHUG00000038729)	trir (ENSHHUG00000038721)	ubn2b (ENSHHUG00000038701)
Northern pike	MODERN SPECIES	10	grb2b (ENSELUG00000009534)	ENSELUG00000001614	ntn1b (ENSELUG00000009578)	ENSELUG00000009671	mfsd6l (ENSELUG00000001441)	zgc:171844 (ENSELUG00000009715)	tom1 (ENSELUG00000009734)	gcat (ENSELUG00000009760)	hmox1a (ENSELUG00000009818)	mcm5 (ENSELUG00000009925)	foxred2 (ENSELUG00000009953)	ankrd54 (ENSELUG00000009995)	hmgxb4a (ENSELUG00000010039)	si:dkeyp-69e1.8 (ENSELUG00000010066)	foxd7 (ENSELUG00000010078)	s1pr5a (ENSELUG00000010090) #22	spc24 (ENSELUG00000010106)	kri1 (ENSELUG00000010137) #20	ldlra (ENSELUG00000010150)	smarca4a (ENSELUG00000010247) #7	ENSELUG00000010272	ENSELUG00000010305	ENSELUG00000010316	ABCC1 (ENSELUG00000000373)	ENSELUG00000010434	ENSELUG00000025393	mgat3a (ENSELUG00000010460)	ENSELUG00000000377	il2rb (ENSELUG00000010497)	ENSELUG00000010523	mpst (ENSELUG00000010532)
Acanthomorphata	ANCESTRAL SPECIES	25	ENSGT00530000063753.B.d	ENSGT00530000063753.A.b	ENSGT00530000063599.A	ENSGT00440000038745.a.a.b	ENSGT00940000156865.b	ENSGT00940000155729	ENSGT00940000172325	ENSGT01050000244824.G	ENSGT00390000017673.b.l	ENSGT00640000091519	ENSGT00940000157805	ENSGT01030000234881	ENSGT00390000012436.g	ENSGT00940000165343.c.b	ENSGT00940000157140.b.b.b	ENSGT01050000244887.A.a.a.a.j #22	ENSGT00390000005584	ENSGT00390000005605 #20	ENSGT00940000154819.a.b.c.a	ENSGT00940000156887.a #7	ENSGT00530000063000.a.a.b.i #21	ENSGT00940000157700.d	ENSGT00950000183144.B	ENSGT00940000161195.a.a	ENSGT00940000160152	ENSGT00390000012267	ENSGT00940000155858.e	ENSGT00950000183099	ENSGT00550000075117.m.b	ENSGT00940000155632.o	ENSGT00530000064086
Euacanthomorphacea	ANCESTRAL SPECIES	5	ENSGT00530000063753.B.d	ENSGT00530000063753.A.b	ENSGT00530000063599.A	ENSGT00440000038745.a.a.b	ENSGT00940000156865.b	ENSGT00940000155729	ENSGT00940000172325	ENSGT01050000244824.G	ENSGT00390000017673.b.l	ENSGT00640000091519	ENSGT00940000157805	ENSGT01030000234881	ENSGT00390000012436.g	ENSGT00940000165343.c.b	ENSGT00940000157140.b.b.b	ENSGT01050000244887.A.a.a.a.j #22	ENSGT00390000005584	ENSGT00390000005605 #20	ENSGT00940000154819.a.b.c.a	ENSGT00940000156887.a #7	ENSGT00530000063000.a.a.b.i #21	ENSGT00940000157700.d	ENSGT00950000183144.B	ENSGT00940000161195.a.a	ENSGT00940000160152	ENSGT00390000012267	ENSGT00940000155858.e	ENSGT00950000183099	ENSGT00550000075117.m.b	ENSGT00940000155632.o	ENSGT00530000064086
Percomorphaceae	ANCESTRAL SPECIES	3	ENSGT00530000063753.B.d	ENSGT00530000063753.A.b	ENSGT00530000063599.A	ENSGT00440000038745.a.a.b	ENSGT00940000156865.b	ENSGT00940000155729	ENSGT00940000172325	ENSGT01050000244824.G	ENSGT00390000017673.b.l	ENSGT00640000091519	ENSGT00940000157805	ENSGT01030000234881	ENSGT00390000012436.g	ENSGT00940000165343.c.b	ENSGT00940000157140.b.b.b	ENSGT01050000244887.A.a.a.a.j #22	ENSGT00390000005584	ENSGT00390000005605 #20	ENSGT00940000154819.a.b.c.a	ENSGT00940000156887.a #7	ENSGT00530000063000.a.a.b.i #21	ENSGT00940000157700.d	ENSGT00950000183144.B	ENSGT00940000161195.a.a	ENSGT00940000160152	ENSGT00390000012267	ENSGT00940000155858.e	ENSGT00950000183099	ENSGT00550000075117.m.b	ENSGT00940000155632.o	ENSGT00530000064086
Tiger tail seahorse	MODERN SPECIES	506	smim20 (ENSHCOG00000010007)	RBPJ (ENSHCOG00000009992)	CCKAR (ENSHCOG00000009933)	tbc1d19 (ENSHCOG00000000630)	zgc:77880 (ENSHCOG00000009864)	stk26 (ENSHCOG00000009843)	ENSHCOG00000009825	MAP3K11 (ENSHCOG00000009802)	drap1 (ENSHCOG00000009796)	zgc:63470 (ENSHCOG00000009790)	rela (ENSHCOG00000009779)	PPP1CB (ENSHCOG00000009767)	SLC29A2 (ENSHCOG00000000638)	ift57 (ENSHCOG00000009743)	SORCS2 (ENSHCOG00000009730)	s1pr5a (ENSHCOG00000009647) #22	spc24 (ENSHCOG00000009636)	kri1 (ENSHCOG00000009624) #20	ldlra (ENSHCOG00000009609)	smarca4a (ENSHCOG00000009510) #7	ATG4D (ENSHCOG00000009439) #21	MAST1 (ENSHCOG00000009422)	ENSHCOG00000009388	ENSHCOG00000009379	rtbdn (ENSHCOG00000009346)	junbb (ENSHCOG00000009342)	hook2 (ENSHCOG00000009310)	trir (ENSHCOG00000009299)	ubn2b (ENSHCOG00000009284)	rpsa (ENSHCOG00000009232)	slc25a38a (ENSHCOG00000009218)
Percomorphaceae_B	ANCESTRAL SPECIES	2	ENSGT00940000153882.a.b.a	ENSGT00530000063753.B.d	ENSGT00530000063753.A.b	ENSGT00530000063599.A	ENSGT00440000038745.a.a.b	ENSGT00940000156865.b	ENSGT00940000155729	ENSGT01050000244824.G	ENSGT00390000017673.b.l	ENSGT00640000091519	ENSGT00940000157805	ENSGT01030000234881	ENSGT00390000012436.g	ENSGT00940000165343.c.b	ENSGT00940000157140.b.b.b	ENSGT01050000244887.A.a.a.a.j #22	ENSGT00390000005584	ENSGT00390000005605 #20	ENSGT00940000154819.a.b.c.a	ENSGT00940000156887.a #7	ENSGT00530000063000.a.a.b.i #21	ENSGT00940000157700.d	ENSGT00950000183144.B	ENSGT00940000161195.a.a	ENSGT00940000160152	ENSGT00390000012267	ENSGT00940000155858.e	ENSGT00950000183099	ENSGT00550000075117.m.b	ENSGT00940000155632.o	ENSGT00530000064086
Percomorphaceae_C	ANCESTRAL SPECIES		ENSGT00940000153882.a.b.a	ENSGT00530000063753.B.d	ENSGT00530000063753.A.b	ENSGT00530000063599.A	ENSGT00440000038745.a.a.b	ENSGT00940000156865.b	ENSGT00940000155729	ENSGT01050000244824.G	ENSGT00390000017673.b.l	ENSGT00640000091519	ENSGT00940000157805	ENSGT01030000234881	ENSGT00390000012436.g	ENSGT00940000165343.c.b	ENSGT00940000157140.b.b.b	ENSGT01050000244887.A.a.a.a.j #22	ENSGT00390000005584	ENSGT00390000005605 #20	ENSGT00940000154819.a.b.c.a	ENSGT00940000156887.a #7	ENSGT00530000063000.a.a.b.i #21	ENSGT00940000157700.d	ENSGT00950000183144.B	ENSGT00940000161195.a.a	ENSGT00940000160152	ENSGT00390000012267	ENSGT00940000155858.e	ENSGT00950000183099	ENSGT00550000075117.m.b	ENSGT00940000155632.o	ENSGT00530000064086
Percomorphaceae_D	ANCESTRAL SPECIES	1	ENSGT00940000153882.a.b.a	ENSGT00530000063753.B.d	ENSGT00530000063753.A.b	ENSGT00530000063599.A	ENSGT00440000038745.a.a.b	ENSGT00940000156865.b	ENSGT00940000155729	ENSGT01050000244824.G	ENSGT00390000017673.b.l	ENSGT00640000091519	ENSGT00940000157805	ENSGT01030000234881	ENSGT00390000012436.g	ENSGT00940000165343.c.b	ENSGT00940000157140.b.b.b	ENSGT01050000244887.A.a.a.a.j #22	ENSGT00390000005584	ENSGT00390000005605 #20	ENSGT00940000154819.a.b.c.a	ENSGT00940000156887.a #7	ENSGT00530000063000.a.a.b.i #21	ENSGT00940000157700.d	ENSGT00950000183144.B	ENSGT00940000161195.a.a	ENSGT00940000160152	ENSGT00390000012267	ENSGT00940000155858.e	ENSGT00950000183099	ENSGT00550000075117.m.b	ENSGT00940000155632.o	ENSGT00530000064086
Carangaria	ANCESTRAL SPECIES	4	ENSGT00940000158772.b	ENSGT00940000153882.a.b.a	ENSGT00530000063753.B.d	ENSGT00530000063753.A.b	ENSGT00530000063599.A	ENSGT00440000038745.a.a.b	ENSGT00940000156865.b	ENSGT00940000155729	ENSGT01050000244824.G	ENSGT00390000017673.b.l	ENSGT00640000091519	ENSGT00940000157805	ENSGT00390000012436.g	ENSGT00940000165343.c.b	ENSGT00940000157140.b.b.b	ENSGT01050000244887.A.a.a.a.j #22	ENSGT00390000005584	ENSGT00390000005605 #20	ENSGT00940000154819.a.b.c.a	ENSGT00940000156887.a #7	ENSGT00530000063000.a.a.b.i #21	ENSGT00940000157700.d	ENSGT00950000183144.B	ENSGT00940000161195.a.a	ENSGT00940000160152	ENSGT00390000012267	ENSGT00940000155858.e	ENSGT00950000183099	ENSGT00550000075117.m.b	ENSGT00940000155632.o	ENSGT00530000064086
Pleuronectoidei	ANCESTRAL SPECIES	2	ENSGT00940000155738	ENSGT00940000158772.b	ENSGT00940000153882.a.b.a	ENSGT00530000063753.B.d	ENSGT00530000063599.A	ENSGT00440000038745.a.a.b	ENSGT00940000156865.b	ENSGT00940000155729	ENSGT01050000244824.G	ENSGT00390000017673.b.l	ENSGT00640000091519	ENSGT00940000157805	ENSGT00390000012436.g	ENSGT00940000165343.c.b	ENSGT00940000157140.b.b.b	ENSGT01050000244887.A.a.a.a.j #22	ENSGT00390000005584	ENSGT00390000005605 #20	ENSGT00940000154819.a.b.c.a	ENSGT00940000156887.a #7	ENSGT00530000063000.a.a.b.i #21	ENSGT00940000157700.d	ENSGT00950000183144.B	ENSGT00940000160152	ENSGT00940000161195.a.a	ENSGT00390000012267	ENSGT00940000155858.e	ENSGT00950000183099	ENSGT00550000075117.m.b	ENSGT00940000155632.o	ENSGT00530000064086
Tongue sole	MODERN SPECIES	8	BPTF (ENSCSEG00000014334)	grb2b (ENSCSEG00000014367)	ENSCSEG00000014381	hmgxb4a (ENSCSEG00000014399)	ankrd54 (ENSCSEG00000014415)	foxred2 (ENSCSEG00000014468)	hmox1a (ENSCSEG00000014482)	mcm5 (ENSCSEG00000014503)	gcat (ENSCSEG00000014525)	tom1 (ENSCSEG00000014540)	mfsd6l (ENSCSEG00000014552)	ENSCSEG00000014558	ntn1b (ENSCSEG00000014566)	si:dkeyp-69e1.8 (ENSCSEG00000014574)	foxd7 (ENSCSEG00000014582)	s1pr5a (ENSCSEG00000014590) #22	spc24 (ENSCSEG00000014595)	kri1 (ENSCSEG00000014632) #20	ldlra (ENSCSEG00000014678)	smarca4a (ENSCSEG00000014771) #7	ATG4D (ENSCSEG00000014816) #21	MAST1 (ENSCSEG00000014975)	rtbdn (ENSCSEG00000014991)	ENSCSEG00000015003	junbb (ENSCSEG00000015048)	trir (ENSCSEG00000015054)	ubn2b (ENSCSEG00000015063)	rpsa (ENSCSEG00000015086)	slc25a38a (ENSCSEG00000015201)	MYH9 (ENSCSEG00000015246)	ENSCSEG00000015385
Turbot	MODERN SPECIES	10	ENSSMAG00000003709	ENSSMAG00000027086	ntn1b (ENSSMAG00000003692)	ENSSMAG00000003654	mfsd6l (ENSSMAG00000003647)	zgc:171844 (ENSSMAG00000003644)	tom1 (ENSSMAG00000003633)	gcat (ENSSMAG00000003602)	mcm5 (ENSSMAG00000003553)	foxred2 (ENSSMAG00000003473)	ankrd54 (ENSSMAG00000003542)	ENSSMAG00000034140	hmgxb4a (ENSSMAG00000003433)	si:dkeyp-69e1.8 (ENSSMAG00000003420)	foxd7 (ENSSMAG00000003416)	s1pr5a (ENSSMAG00000003411) #22	spc24 (ENSSMAG00000025121)	kri1 (ENSSMAG00000003342) #20	ldlra (ENSSMAG00000003321)	smarca4a (ENSSMAG00000003200) #7	ENSSMAG00000003181 #21	ENSSMAG00000003147	rtbdn (ENSSMAG00000003131)	ENSSMAG00000003103	ENSSMAG00000003094	ENSSMAG00000023842	ENSSMAG00000002993	ENSSMAG00000002885	txn2 (ENSSMAG00000002868)	ENSSMAG00000002861	ENSSMAG00000002831
Carangaria_A	ANCESTRAL SPECIES	12	ENSGT00940000158772.b	ENSGT00940000153882.a.b.a	ENSGT00530000063753.B.d	ENSGT00530000063753.A.b	ENSGT00530000063599.A	ENSGT00440000038745.a.a.b	ENSGT00940000156865.b	ENSGT00940000155729	ENSGT01050000244824.G	ENSGT00390000017673.b.l	ENSGT00640000091519	ENSGT00940000157805	ENSGT00390000012436.g	ENSGT00940000165343.c.b	ENSGT00940000157140.b.b.b	ENSGT01050000244887.A.a.a.a.j #22	ENSGT00390000005584	ENSGT00390000005605 #20	ENSGT00940000154819.a.b.c.a	ENSGT00940000156887.a #7	ENSGT00530000063000.a.a.b.i #21	ENSGT00940000157700.d	ENSGT00950000183144.B	ENSGT00940000161195.a.a	ENSGT00940000160152	ENSGT00390000012267	ENSGT00940000155858.e	ENSGT00950000183099	ENSGT00550000075117.m.b	ENSGT00940000155632.o	ENSGT00530000064086
Barramundi perch	MODERN SPECIES	138	USP43 (ENSLCAG00010021058)	ntn1b (ENSLCAG00010021046)	PIK3R5 (ENSLCAG00010021035)	ENSLCAG00010021029	mfsd6l (ENSLCAG00010021027)	zgc:171844 (ENSLCAG00010021024)	tom1 (ENSLCAG00010021017)	gcat (ENSLCAG00010021011)	mcm5 (ENSLCAG00010020992)	hmox1a (ENSLCAG00010020980)	foxred2 (ENSLCAG00010020974)	ankrd54 (ENSLCAG00010020969)	hmgxb4a (ENSLCAG00010020965)	si:dkeyp-69e1.8 (ENSLCAG00010020962)	foxd7 (ENSLCAG00010020945)	s1pr5a (ENSLCAG00010020943) #22	spc24 (ENSLCAG00010020940)	kri1 (ENSLCAG00010020932) #20	ldlra (ENSLCAG00010020566)	smarca4a (ENSLCAG00010020479) #7	ENSLCAG00010020430	ATG4D (ENSLCAG00010020427) #21	MAST1 (ENSLCAG00010020419)	rtbdn (ENSLCAG00010020407)	junbb (ENSLCAG00010020403)	hook2 (ENSLCAG00010020100)	trir (ENSLCAG00010019994)	ubn2b (ENSLCAG00010019976)	rpsa (ENSLCAG00010019953)	slc25a38a (ENSLCAG00010019948)	MYH9 (ENSLCAG00010017682)
Seriola	ANCESTRAL SPECIES	23	ENSGT00940000180418	ENSGT00940000158772.b	ENSGT00940000153882.a.b.a	ENSGT00530000063753.B.d	ENSGT00530000063599.A	ENSGT00440000038745.a.a.b	ENSGT00940000156865.b	ENSGT00940000155729	ENSGT01050000244824.G	ENSGT00390000017673.b.l	ENSGT00640000091519	ENSGT00940000157805	ENSGT00390000012436.g	ENSGT00940000165343.c.b	ENSGT00940000157140.b.b.b	ENSGT01050000244887.A.a.a.a.j #22	ENSGT00390000005584	ENSGT00390000005605 #20	ENSGT00940000154819.a.b.c.a	ENSGT00940000156887.a #7	ENSGT00530000063000.a.a.b.i #21	ENSGT00940000157700.d	ENSGT00950000183144.B	ENSGT00940000161195.a.a	ENSGT00940000160152	ENSGT00390000012267	ENSGT00940000155858.e	ENSGT00390000018482	ENSGT00940000161324.h.b	ENSGT00390000018868.A	ENSGT00530000063694.b
Greater amberjack	MODERN SPECIES	225	MCHR1 (ENSSDUG00000017748)	USP43 (ENSSDUG00000017730)	ntn1b (ENSSDUG00000017718)	PIK3R5 (ENSSDUG00000017697)	mfsd6l (ENSSDUG00000017690)	zgc:171844 (ENSSDUG00000017674)	tom1 (ENSSDUG00000017623)	gcat (ENSSDUG00000017601)	mcm5 (ENSSDUG00000017539)	hmox1a (ENSSDUG00000017522)	foxred2 (ENSSDUG00000017501)	ankrd54 (ENSSDUG00000017492)	hmgxb4a (ENSSDUG00000017480)	si:dkeyp-69e1.8 (ENSSDUG00000017466)	foxd7 (ENSSDUG00000017459)	s1pr5a (ENSSDUG00000017452) #22	spc24 (ENSSDUG00000017432)	kri1 (ENSSDUG00000017395) #20	ldlra (ENSSDUG00000017366)	smarca4a (ENSSDUG00000017298) #7	ATG4D (ENSSDUG00000017265) #21	MAST1 (ENSSDUG00000017147)	rtbdn (ENSSDUG00000017125)	junbb (ENSSDUG00000017119)	hook2 (ENSSDUG00000017095)	trir (ENSSDUG00000017089)	ubn2b (ENSSDUG00000016985)	rrp7a (ENSSDUG00000016921)	ENSSDUG00000016940	POLDIP3 (ENSSDUG00000016881)	fam234b (ENSSDUG00000016835)
Yellowtail amberjack	MODERN SPECIES	3214	ENSSLDG00000024265	ENSSLDG00000024270	ntn1b (ENSSLDG00000024278)	PIK3R5 (ENSSLDG00000024284)	mfsd6l (ENSSLDG00000024296)	zgc:171844 (ENSSLDG00000024299)	tom1 (ENSSLDG00000024310)	gcat (ENSSLDG00000024328)	mcm5 (ENSSLDG00000024344)	hmox1a (ENSSLDG00000024376)	foxred2 (ENSSLDG00000024389)	ankrd54 (ENSSLDG00000024403)	hmgxb4a (ENSSLDG00000024411)	si:dkeyp-69e1.8 (ENSSLDG00000024430)	foxd7 (ENSSLDG00000024433)	s1pr5a (ENSSLDG00000024435) #22	spc24 (ENSSLDG00000024439)	kri1 (ENSSLDG00000024449) #20	ldlra (ENSSLDG00000024476)	smarca4a (ENSSLDG00000024486) #7	ATG4D (ENSSLDG00000024552) #21	MAST1 (ENSSLDG00000024572)	ENSSLDG00000024651	rtbdn (ENSSLDG00000024661)	junbb (ENSSLDG00000024674)	hook2 (ENSSLDG00000024683)	trir (ENSSLDG00000024724)	ubn2b (ENSSLDG00000024732)	rrp7a (ENSSLDG00000024758)	POLDIP3 (ENSSLDG00000024763)	fam234b (ENSSLDG00000024774)
Anabantaria	ANCESTRAL SPECIES	6	ENSGT00940000153882.a.b.a	ENSGT00530000063753.B.d	ENSGT00530000063753.A.b	ENSGT00530000063599.A	ENSGT00440000038745.a.a.b	ENSGT00940000156865.b	ENSGT00940000155729	ENSGT01050000244824.G	ENSGT00390000017673.b.l	ENSGT00640000091519	ENSGT00940000157805	ENSGT01030000234881	ENSGT00390000012436.g	ENSGT00940000165343.c.b	ENSGT00940000157140.b.b.b	ENSGT01050000244887.A.a.a.a.j #22	ENSGT00390000005584	ENSGT00390000005605 #20	ENSGT00940000154819.a.b.c.a	ENSGT00940000156887.a #7	ENSGT00530000063000.a.a.b.i #21	ENSGT00940000157700.d	ENSGT00950000183144.B	ENSGT00940000161195.a.a	ENSGT00940000160152	ENSGT00390000012267	ENSGT00940000155858.e	ENSGT00950000183099	ENSGT00550000075117.m.b	ENSGT00940000155632.o	ENSGT00530000064086
Anabantoidei	ANCESTRAL SPECIES	7	ENSGT00940000158772.b	ENSGT00940000153882.a.b.a	ENSGT00530000063753.B.d	ENSGT00530000063599.A	ENSGT00440000038745.a.a.b	ENSGT00940000156865.b	ENSGT00940000155729	ENSGT01050000244824.G	ENSGT00390000017673.b.l	ENSGT00640000091519	ENSGT00940000157805	ENSGT01030000234881	ENSGT00390000012436.g	ENSGT00940000165343.c.b	ENSGT00940000157140.b.b.b	ENSGT01050000244887.A.a.a.a.j #22	ENSGT00390000005584	ENSGT00390000005605 #20	ENSGT00940000154819.a.b.c.a	ENSGT00940000156887.a #7	ENSGT00530000063000.a.a.b.i #21	ENSGT00940000157700.d	ENSGT00950000183144.B	ENSGT00940000161195.a.a	ENSGT00940000160152	ENSGT00390000012267	ENSGT00940000155858.e	ENSGT00950000183099	ENSGT00550000075117.m.b	ENSGT00940000155632.o	ENSGT00530000064086
Climbing perch	MODERN SPECIES	21	ENSATEG00000010903	ntn1b (ENSATEG00000004066)	PIK3R5 (ENSATEG00000010968)	mfsd6l (ENSATEG00000010980)	zgc:171844 (ENSATEG00000010985)	tom1 (ENSATEG00000010996)	gcat (ENSATEG00000011027)	mcm5 (ENSATEG00000011079)	hmox1a (ENSATEG00000026604)	foxred2 (ENSATEG00000011159)	ankrd54 (ENSATEG00000011200)	hmgxb4a (ENSATEG00000011233)	si:dkeyp-69e1.8 (ENSATEG00000028983)	foxd7 (ENSATEG00000011254)	ENSATEG00000011261	s1pr5a (ENSATEG00000011280) #22	spc24 (ENSATEG00000025331)	kri1 (ENSATEG00000011294) #20	ldlra (ENSATEG00000011318)	ENSATEG00000011473	smarca4a (ENSATEG00000011524) #7	ENSATEG00000011639 #21	MAST1 (ENSATEG00000011656)	ENSATEG00000028219	junbb (ENSATEG00000026800)	hook2 (ENSATEG00000011779)	trir (ENSATEG00000011822)	ubn2b (ENSATEG00000011798)	ENSATEG00000011829	ENSATEG00000011864	ENSATEG00000011896
Siamese fighting fish	MODERN SPECIES	19	ENSBSLG00000008480	ntn1b (ENSBSLG00000008236)	PIK3R5 (ENSBSLG00000007699)	ENSBSLG00000007698	mfsd6l (ENSBSLG00000007696)	tom1 (ENSBSLG00000007690)	ENSBSLG00000007686	gcat (ENSBSLG00000007653)	mcm5 (ENSBSLG00000007575)	hmox1a (ENSBSLG00000007561)	ankrd54 (ENSBSLG00000007549)	ENSBSLG00000007547	hmgxb4a (ENSBSLG00000007543)	si:dkeyp-69e1.8 (ENSBSLG00000007541)	foxd7 (ENSBSLG00000007540)	s1pr5a (ENSBSLG00000007536) #22	spc24 (ENSBSLG00000007535)	kri1 (ENSBSLG00000007526) #20	ldlra (ENSBSLG00000007510)	smarca4a (ENSBSLG00000007418) #7	ATG4D (ENSBSLG00000007413) #21	ENSBSLG00000007367	rtbdn (ENSBSLG00000007358)	junbb (ENSBSLG00000007355)	hook2 (ENSBSLG00000006692)	trir (ENSBSLG00000006271)	rpsa (ENSBSLG00000006254)	ENSBSLG00000006253	ENSBSLG00000006252	ENSBSLG00000006249	ENSBSLG00000004589
Zig-zag eel	MODERN SPECIES	22	ENSMAMG00000008623	USP43 (ENSMAMG00000008613)	ntn1b (ENSMAMG00000008579)	PIK3R5 (ENSMAMG00000008557)	PIK3R6 (ENSMAMG00000008538)	mfsd6l (ENSMAMG00000025339)	zgc:171844 (ENSMAMG00000008507)	tom1 (ENSMAMG00000008469)	gcat (ENSMAMG00000008447)	mcm5 (ENSMAMG00000008389)	hmox1a (ENSMAMG00000028242)	foxred2 (ENSMAMG00000008352)	ankrd54 (ENSMAMG00000008322)	hmgxb4a (ENSMAMG00000008307)	si:dkeyp-69e1.8 (ENSMAMG00000008300)	s1pr5a (ENSMAMG00000008282) #22	ENSMAMG00000008278	kri1 (ENSMAMG00000008253) #20	ENSMAMG00000026730	ndufa6 (ENSMAMG00000028307)	triobpb (ENSMAMG00000008212)	nol12 (ENSMAMG00000008197)	srebf2 (ENSMAMG00000008175)	ENSMAMG00000008163	ENSMAMG00000008151	ENSMAMG00000008137	ENSMAMG00000026507	ENSMAMG00000008120	ENSMAMG00000008091	sox10 (ENSMAMG00000008069)	POLR2F (ENSMAMG00000024609)
Eupercaria	ANCESTRAL SPECIES	3	ENSGT00940000158772.b	ENSGT00940000153882.a.b.a	ENSGT00530000063753.B.d	ENSGT00530000063753.A.b	ENSGT00530000063599.A	ENSGT00440000038745.a.a.b	ENSGT00940000156865.b	ENSGT00940000155729	ENSGT01050000244824.G	ENSGT00390000017673.b.l	ENSGT00640000091519	ENSGT00940000157805	ENSGT00390000012436.g	ENSGT00940000165343.c.b	ENSGT00940000157140.b.b.b	ENSGT01050000244887.A.a.a.a.j #22	ENSGT00390000005584	ENSGT00390000005605 #20	ENSGT00940000154819.a.b.c.a	ENSGT00940000156887.a #7	ENSGT00530000063000.a.a.b.i #21	ENSGT00940000157700.d	ENSGT00950000183144.B	ENSGT00940000161195.a.a	ENSGT00940000160152	ENSGT00390000012267	ENSGT00940000155858.e	ENSGT00950000183099	ENSGT00550000075117.m.b	ENSGT00940000155632.o	ENSGT00530000064086
Eupecaria_A	ANCESTRAL SPECIES	5	ENSGT00940000158772.b	ENSGT00940000153882.a.b.a	ENSGT00530000063753.B.d	ENSGT00530000063753.A.b	ENSGT00530000063599.A	ENSGT00440000038745.a.a.b	ENSGT00940000156865.b	ENSGT00940000155729	ENSGT01050000244824.G	ENSGT00390000017673.b.l	ENSGT00640000091519	ENSGT00940000157805	ENSGT00390000012436.g	ENSGT00940000165343.c.b	ENSGT00940000157140.b.b.b	ENSGT01050000244887.A.a.a.a.j #22	ENSGT00390000005584	ENSGT00390000005605 #20	ENSGT00940000154819.a.b.c.a	ENSGT00940000156887.a #7	ENSGT00530000063000.a.a.b.i #21	ENSGT00940000157700.d	ENSGT00950000183144.B	ENSGT00940000161195.a.a	ENSGT00940000160152	ENSGT00390000012267	ENSGT00940000155858.e	ENSGT00950000183099	ENSGT00550000075117.m.b	ENSGT00940000155632.o	ENSGT00530000064086
Ballan wrasse	MODERN SPECIES	690														si:dkeyp-69e1.8 (ENSLBEG00000017644)	foxd7 (ENSLBEG00000017622)	s1pr5a (ENSLBEG00000017616) #22	spc24 (ENSLBEG00000017586)	kri1 (ENSLBEG00000017518) #20	ldlra (ENSLBEG00000017475)	smarca4a (ENSLBEG00000017383) #7	ENSLBEG00000017233	ATG4D (ENSLBEG00000017157) #21
Eupecaria_B	ANCESTRAL SPECIES		ENSGT00940000158772.b	ENSGT00940000153882.a.b.a	ENSGT00530000063753.B.d	ENSGT00530000063753.A.b	ENSGT00530000063599.A	ENSGT00440000038745.a.a.b	ENSGT00940000156865.b	ENSGT00940000155729	ENSGT01050000244824.G	ENSGT00390000017673.b.l	ENSGT00640000091519	ENSGT00940000157805	ENSGT00390000012436.g	ENSGT00940000165343.c.b	ENSGT00940000157140.b.b.b	ENSGT01050000244887.A.a.a.a.j #22	ENSGT00390000005584	ENSGT00390000005605 #20	ENSGT00940000154819.a.b.c.a	ENSGT00940000156887.a #7	ENSGT00530000063000.a.a.b.i #21	ENSGT00940000157700.d	ENSGT00950000183144.B	ENSGT00940000161195.a.a	ENSGT00940000160152	ENSGT00390000012267	ENSGT00940000155858.e	ENSGT00950000183099	ENSGT00550000075117.m.b	ENSGT00940000155632.o	ENSGT00530000064086
Perciformes	ANCESTRAL SPECIES	1	ENSGT00940000158772.b	ENSGT00940000153882.a.b.a	ENSGT00530000063753.B.d	ENSGT00530000063753.A.b	ENSGT00530000063599.A	ENSGT00440000038745.a.a.b	ENSGT00940000156865.b	ENSGT00940000155729	ENSGT01050000244824.G	ENSGT00390000017673.b.l	ENSGT00640000091519	ENSGT00940000157805	ENSGT00390000012436.g	ENSGT00940000165343.c.b	ENSGT00940000157140.b.b.b	ENSGT01050000244887.A.a.a.a.j #22	ENSGT00390000005584	ENSGT00390000005605 #20	ENSGT00940000154819.a.b.c.a	ENSGT00940000156887.a #7	ENSGT00530000063000.a.a.b.i #21	ENSGT00940000157700.d	ENSGT00950000183144.B	ENSGT00940000161195.a.a	ENSGT00940000160152	ENSGT00390000012267	ENSGT00940000155858.e	ENSGT00950000183099	ENSGT00550000075117.m.b	ENSGT00940000155632.o	ENSGT00530000064086
Perciformes_a	ANCESTRAL SPECIES	1	ENSGT00940000154272.B.b	ENSGT00940000158772.b	ENSGT00940000153882.a.b.a	ENSGT00530000063753.B.d	ENSGT00530000063599.A	ENSGT00440000038745.a.a.b	ENSGT00940000156865.b	ENSGT00940000155729	ENSGT01050000244824.G	ENSGT00390000017673.b.l	ENSGT00640000091519	ENSGT00940000157805	ENSGT00390000012436.g	ENSGT00940000165343.c.b	ENSGT00940000157140.b.b.b	ENSGT01050000244887.A.a.a.a.j #22	ENSGT00390000005584	ENSGT00390000005605 #20	ENSGT00940000154819.a.b.c.a	ENSGT00940000156887.a #7	ENSGT00530000063000.a.a.b.i #21	ENSGT00940000157700.d	ENSGT00950000183144.B	ENSGT00940000161195.a.a	ENSGT00940000160152	ENSGT00940000155858.e	ENSGT00390000012267	ENSGT00950000183099	ENSGT00550000075117.m.b	ENSGT00940000155632.o	ENSGT00530000064086
Pike perch	MODERN SPECIES	38	USP43 (ENSSLUG00000005938)	ntn1b (ENSSLUG00000005910)	ENSSLUG00000005884	ENSSLUG00000005882	mfsd6l (ENSSLUG00000005875)	zgc:171844 (ENSSLUG00000005864)	ENSSLUG00000005849	gcat (ENSSLUG00000005665)	mcm5 (ENSSLUG00000005621)	hmox1a (ENSSLUG00000005599)	foxred2 (ENSSLUG00000005588)	ankrd54 (ENSSLUG00000005577)	hmgxb4a (ENSSLUG00000005569)	si:dkeyp-69e1.8 (ENSSLUG00000005562)	foxd7 (ENSSLUG00000005557)	s1pr5a (ENSSLUG00000005546) #22	spc24 (ENSSLUG00000005537)	kri1 (ENSSLUG00000005522) #20	ldlra (ENSSLUG00000018042)	smarca4a (ENSSLUG00000017847) #7	ATG4D (ENSSLUG00000017825) #21	MAST1 (ENSSLUG00000017811)	rtbdn (ENSSLUG00000017798)	junbb (ENSSLUG00000017793)	hook2 (ENSSLUG00000016658)
Channel bull blenny	MODERN SPECIES	22	MCHR1 (ENSCGOG00000011216)	ENSCGOG00000011220	ENSCGOG00000011225	ntn1b (ENSCGOG00000011229)	mfsd6l (ENSCGOG00000011254)	zgc:171844 (ENSCGOG00000011255)	tom1 (ENSCGOG00000011258)	gcat (ENSCGOG00000011272)	mcm5 (ENSCGOG00000011316)	hmox1a (ENSCGOG00000011632)	foxred2 (ENSCGOG00000011637)	ankrd54 (ENSCGOG00000011675)	hmgxb4a (ENSCGOG00000011687)	si:dkeyp-69e1.8 (ENSCGOG00000011695)	foxd7 (ENSCGOG00000011699)	s1pr5a (ENSCGOG00000011705) #22	spc24 (ENSCGOG00000011708)	kri1 (ENSCGOG00000011712) #20	ldlra (ENSCGOG00000011766)	smarca4a (ENSCGOG00000012016) #7	ATG4D (ENSCGOG00000016428) #21	MAST1 (ENSCGOG00000016453)	rtbdn (ENSCGOG00000017728)	junbb (ENSCGOG00000017729)	hook2 (ENSCGOG00000017755)	ubn2b (ENSCGOG00000018563)	trir (ENSCGOG00000018567)	rpsa (ENSCGOG00000018572)	slc25a38a (ENSCGOG00000018575)	MYH9 (ENSCGOG00000018703)	txn2 (ENSCGOG00000023533)
Cottioidei	ANCESTRAL SPECIES	1	ENSGT00940000158772.b	ENSGT00940000153882.a.b.a	ENSGT00530000063753.B.d	ENSGT00530000063753.A.b	ENSGT00530000063599.A	ENSGT00440000038745.a.a.b	ENSGT00940000156865.b	ENSGT00940000155729	ENSGT01050000244824.G	ENSGT00390000017673.b.l	ENSGT00640000091519	ENSGT00940000157805	ENSGT00390000012436.g	ENSGT00940000165343.c.b	ENSGT00940000157140.b.b.b	ENSGT01050000244887.A.a.a.a.j #22	ENSGT00390000005584	ENSGT00390000005605 #20	ENSGT00940000154819.a.b.c.a	ENSGT00940000156887.a #7	ENSGT00530000063000.a.a.b.i #21	ENSGT00940000157700.d	ENSGT00950000183144.B	ENSGT00940000161195.a.a	ENSGT00940000160152	ENSGT00940000166981	ENSGT00940000160609.f	ENSGT00510000048192	ENSGT01060000248595.b.a.b.b.a.a	ENSGT00940000164511.C	ENSGT00950000182818.A
Stickleback	MODERN SPECIES	10	BPTF (ENSGACG00000006907)	grb2b (ENSGACG00000006896)	USP43 (ENSGACG00000006879)	ntn1b (ENSGACG00000006867)	PIK3R5 (ENSGACG00000006852)	ENSGACG00000006848	mfsd6l (ENSGACG00000006845)	zgc:171844 (ENSGACG00000006843)	tom1 (ENSGACG00000006786)	mcm5 (ENSGACG00000006776)	hmox1a (ENSGACG00000006771)	foxred2 (ENSGACG00000006763)	ankrd54 (ENSGACG00000006757)	hmgxb4a (ENSGACG00000006744)	si:dkeyp-69e1.8 (ENSGACG00000006740)	s1pr5a (ENSGACG00000006737) #22	spc24 (ENSGACG00000006733)	kri1 (ENSGACG00000006712) #20	ldlra (ENSGACG00000006705)	smarca4a (ENSGACG00000006691) #7	ENSGACG00000006688 #21	MAST1 (ENSGACG00000006669)	rtbdn (ENSGACG00000006658)	junbb (ENSGACG00000006654)	hook2 (ENSGACG00000006640)	syt5a (ENSGACG00000006630)	tnnt1 (ENSGACG00000006626)	pih1d1 (ENSGACG00000006615)	ENSGACG00000006606	ENSGACG00000006598	prl (ENSGACG00000006561)
Lumpfish	MODERN SPECIES	23	USP43 (ENSCLMG00005016506)	ntn1b (ENSCLMG00005016505)	PIK3R5 (ENSCLMG00005016499)	ENSCLMG00005016494	mfsd6l (ENSCLMG00005016492)	zgc:171844 (ENSCLMG00005016490)	tom1 (ENSCLMG00005016489)	gcat (ENSCLMG00005016299)	mcm5 (ENSCLMG00005016272)	hmox1a (ENSCLMG00005016269)	foxred2 (ENSCLMG00005016267)	ankrd54 (ENSCLMG00005016265)	hmgxb4a (ENSCLMG00005016263)	si:dkeyp-69e1.8 (ENSCLMG00005016262)	foxd7 (ENSCLMG00005016261)	s1pr5a (ENSCLMG00005016260) #22	spc24 (ENSCLMG00005016259)	kri1 (ENSCLMG00005016257) #20	ldlra (ENSCLMG00005015217)	smarca4a (ENSCLMG00005015175) #7	ATG4D (ENSCLMG00005015166) #21	MAST1 (ENSCLMG00005014982)	rtbdn (ENSCLMG00005014980)	junbb (ENSCLMG00005014979)	hook2 (ENSCLMG00005010761)	syt5a (ENSCLMG00005010737)	tnnt1 (ENSCLMG00005010732)	pih1d1 (ENSCLMG00005010731)	ENSCLMG00005004872	ENSCLMG00005004778	prl (ENSCLMG00005004773)
Eupecaria_C	ANCESTRAL SPECIES	17	ENSGT00940000158772.b	ENSGT00940000153882.a.b.a	ENSGT00530000063753.B.d	ENSGT00530000063753.A.b	ENSGT00530000063599.A	ENSGT00440000038745.a.a.b	ENSGT00940000156865.b	ENSGT00940000155729	ENSGT01050000244824.G	ENSGT00390000017673.b.l	ENSGT00640000091519	ENSGT00940000157805	ENSGT00390000012436.g	ENSGT00940000165343.c.b	ENSGT00940000157140.b.b.b	ENSGT01050000244887.A.a.a.a.j #22	ENSGT00390000005584	ENSGT00390000005605 #20	ENSGT00940000154819.a.b.c.a	ENSGT00940000156887.a #7	ENSGT00530000063000.a.a.b.i #21	ENSGT00940000157700.d	ENSGT00950000183144.B	ENSGT00940000161195.a.a	ENSGT00940000160152	ENSGT00390000012267	ENSGT00940000155858.e	ENSGT00950000183099	ENSGT00550000075117.m.b	ENSGT00940000155632.o	ENSGT00530000064086
Gilthead seabream	MODERN SPECIES	15	MCHR1 (ENSSAUG00010002913)	ENSSAUG00010002905	ntn1b (ENSSAUG00010002889)	ENSSAUG00010002823	mfsd6l (ENSSAUG00010025872)	zgc:171844 (ENSSAUG00010025871)	tom1 (ENSSAUG00010025869)	gcat (ENSSAUG00010025862)	mcm5 (ENSSAUG00010025861)	hmox1a (ENSSAUG00010025859)	foxred2 (ENSSAUG00010025858)	ankrd54 (ENSSAUG00010025857)	hmgxb4a (ENSSAUG00010025855)	si:dkeyp-69e1.8 (ENSSAUG00010025854)	foxd7 (ENSSAUG00010025853)	s1pr5a (ENSSAUG00010025851) #22	spc24 (ENSSAUG00010025850)	kri1 (ENSSAUG00010025845) #20	ldlra (ENSSAUG00010025481)	smarca4a (ENSSAUG00010025438) #7	ATG4D (ENSSAUG00010025435) #21	MAST1 (ENSSAUG00010025250)	rtbdn (ENSSAUG00010025236)	junbb (ENSSAUG00010025234)	hook2 (ENSSAUG00010025205)	trir (ENSSAUG00010025196)	ubn2b (ENSSAUG00010025195)	rpsa (ENSSAUG00010025190)	slc25a38a (ENSSAUG00010025186)	MYH9 (ENSSAUG00010024631)	txn2 (ENSSAUG00010024601)
Eupercaria_incertae_sedis	ANCESTRAL SPECIES	26	ENSGT00940000158772.b	ENSGT00940000153882.a.b.a	ENSGT00530000063753.B.d	ENSGT00530000063753.A.b	ENSGT00530000063599.A	ENSGT00440000038745.a.a.b	ENSGT00940000156865.b	ENSGT00940000155729	ENSGT01050000244824.G	ENSGT00390000017673.b.l	ENSGT00640000091519	ENSGT00940000157805	ENSGT00390000012436.g	ENSGT00940000165343.c.b	ENSGT00940000157140.b.b.b	ENSGT01050000244887.A.a.a.a.j #22	ENSGT00390000005584	ENSGT00390000005605 #20	ENSGT00940000154819.a.b.c.a	ENSGT00940000156887.a #7	ENSGT00530000063000.a.a.b.i #21	ENSGT00940000157700.d	ENSGT00950000183144.B	ENSGT00940000161195.a.a	ENSGT00940000160152	ENSGT00390000012267	ENSGT00940000155858.e	ENSGT00950000183099	ENSGT00550000075117.m.b	ENSGT00940000155632.o	ENSGT00530000064086
European seabass	MODERN SPECIES	21	ENSDLAG00005004657	ENSDLAG00005031824	ENSDLAG00005003683	ENSDLAG00005031261	ENSDLAG00005031572	ENSDLAG00005029130	mfsd6l (ENSDLAG00005033039)	tom1 (ENSDLAG00005025467)	gcat (ENSDLAG00005025460)	mcm5 (ENSDLAG00005025443)	hmox1a (ENSDLAG00005025440)	foxred2 (ENSDLAG00005025435)	ankrd54 (ENSDLAG00005025423)	si:dkeyp-69e1.8 (ENSDLAG00005025420)	foxd7 (ENSDLAG00005030410)	s1pr5a (ENSDLAG00005034138) #22	spc24 (ENSDLAG00005025414)	kri1 (ENSDLAG00005025407) #20	ldlra (ENSDLAG00005025005)	smarca4a (ENSDLAG00005024921) #7	ENSDLAG00005024911 #21	MAST1 (ENSDLAG00005024754)	rtbdn (ENSDLAG00005029809)	junbb (ENSDLAG00005024718)	hook2 (ENSDLAG00005024232)	trir (ENSDLAG00005030948)	ubn2b (ENSDLAG00005024137)	ENSDLAG00005033984	ENSDLAG00005022268	ENSDLAG00005022198	ENSDLAG00005022196
Large yellow croaker	MODERN SPECIES	483	ENSLCRG00005016814	mfsd6l (ENSLCRG00005016813)	zgc:171844 (ENSLCRG00005016811)	ENSLCRG00005016810	ENSLCRG00005016809	ENSLCRG00005016808	tom1 (ENSLCRG00005016807)	gcat (ENSLCRG00005016803)	mcm5 (ENSLCRG00005016396)	hmox1a (ENSLCRG00005016391)	foxred2 (ENSLCRG00005016389)	ankrd54 (ENSLCRG00005016377)	hmgxb4a (ENSLCRG00005016374)	si:dkeyp-69e1.8 (ENSLCRG00005016373)	foxd7 (ENSLCRG00005016371)	s1pr5a (ENSLCRG00005016370) #22	spc24 (ENSLCRG00005016367)	ENSLCRG00005016364	kri1 (ENSLCRG00005016338) #20	ldlra (ENSLCRG00005011815)	ENSLCRG00005011744	ENSLCRG00005011737	AATK (ENSLCRG00005011717)	baiap2a (ENSLCRG00005011647)	CHMP6 (ENSLCRG00005011636)	ttyh2l (ENSLCRG00005011632)	SDK2 (ENSLCRG00005011252)	pmp22a (ENSLCRG00005011239)	hs3st3b1a (ENSLCRG00005011238)	ARHGAP44 (ENSLCRG00005011235)	ENSLCRG00005011234
Ovalentaria	ANCESTRAL SPECIES	1	ENSGT00940000158772.b	ENSGT00940000153882.a.b.a	ENSGT00530000063753.B.d	ENSGT00530000063753.A.b	ENSGT00530000063599.A	ENSGT00440000038745.a.a.b	ENSGT00940000156865.b	ENSGT00940000155729	ENSGT01050000244824.G	ENSGT00390000017673.b.l	ENSGT00640000091519	ENSGT00940000157805	ENSGT00390000012436.g	ENSGT00940000165343.c.b	ENSGT00940000157140.b.b.b	ENSGT01050000244887.A.a.a.a.j #22	ENSGT00390000005584	ENSGT00390000005605 #20	ENSGT00940000154819.a.b.c.a	ENSGT00940000156887.a #7	ENSGT00530000063000.a.a.b.i #21	ENSGT00940000157700.d	ENSGT00950000183144.B	ENSGT00940000161195.a.a	ENSGT00940000160152	ENSGT00390000012267	ENSGT00940000155858.e	ENSGT00950000183099	ENSGT00550000075117.m.b	ENSGT00940000155632.o	ENSGT00530000064086
Atherinomorphae	ANCESTRAL SPECIES	25	ENSGT00940000155738	ENSGT00940000158772.b	ENSGT00940000153882.a.b.a	ENSGT00530000063753.B.d	ENSGT00530000063599.A	ENSGT00440000038745.a.a.b	ENSGT00940000156865.b	ENSGT00940000155729	ENSGT01050000244824.G	ENSGT00390000017673.b.l	ENSGT00640000091519	ENSGT00940000157805	ENSGT00390000012436.g	ENSGT00940000165343.c.b	ENSGT00940000157140.b.b.b	ENSGT01050000244887.A.a.a.a.j #22	ENSGT00390000005584	ENSGT00390000005605 #20	ENSGT00940000154819.a.b.c.a	ENSGT00940000177737	ENSGT00940000156887.a #7	ENSGT00530000063000.a.a.b.i #21	ENSGT00940000157700.d	ENSGT00950000183144.B	ENSGT00940000161195.a.a	ENSGT00940000160152	ENSGT00390000012267	ENSGT00940000155858.e	ENSGT00950000183099	ENSGT00550000075117.m.b	ENSGT00940000155632.o
Cyprinodontiformes	ANCESTRAL SPECIES	3	ENSGT00940000155738	ENSGT00940000158772.b	ENSGT00940000153882.a.b.a	ENSGT00530000063753.B.d	ENSGT00530000063599.A	ENSGT00440000038745.a.a.b	ENSGT00940000156865.b	ENSGT00940000155729	ENSGT01050000244824.G	ENSGT00390000017673.b.l	ENSGT00640000091519	ENSGT00940000157805	ENSGT00390000012436.g	ENSGT00940000165343.c.b	ENSGT00940000157140.b.b.b	ENSGT01050000244887.A.a.a.a.j #22	ENSGT00390000005584	ENSGT00390000005605 #20	ENSGT00940000154819.a.b.c.a	ENSGT00940000177737	ENSGT00940000156887.a #7	ENSGT00530000063000.a.a.b.i #21	ENSGT00940000157700.d	ENSGT00950000183144.B	ENSGT00940000161195.a.a	ENSGT00940000160152	ENSGT00390000012267	ENSGT00940000155858.e	ENSGT00950000183099	ENSGT00550000075117.m.b	ENSGT00940000155632.o
Aplocheiloidei	ANCESTRAL SPECIES	30	ENSGT00940000154830.c	ENSGT00940000155738	ENSGT00940000158772.b	ENSGT00940000153882.a.b.a	ENSGT00530000063753.B.d	ENSGT00530000063599.A	ENSGT00940000156865.b	ENSGT00940000155729	ENSGT01050000244824.G	ENSGT00390000017673.b.l	ENSGT00640000091519	ENSGT00940000157805	ENSGT00390000012436.g	ENSGT00940000165343.c.b	ENSGT00940000157140.b.b.b	ENSGT01050000244887.A.a.a.a.j #22	ENSGT00390000005584	ENSGT00390000005605 #20	ENSGT00940000154819.a.b.c.a	ENSGT00940000156887.a #7	ENSGT00530000063000.a.a.b.i #21	ENSGT00940000157700.d	ENSGT00950000183144.B	ENSGT00940000161195.a.a	ENSGT00940000160152	ENSGT00390000012267	ENSGT00940000155858.e	ENSGT00950000183099	ENSGT00550000075117.m.b	ENSGT00940000155632.o	ENSGT00530000064086
Mangrove rivulus	MODERN SPECIES	37	BPTF (ENSKMAG00000012749)	grb2b (ENSKMAG00000012716)	ENSKMAG00000012694	ntn1b (ENSKMAG00000012664)	ENSKMAG00000012627	mfsd6l (ENSKMAG00000012614)	tom1 (ENSKMAG00000012555)	gcat (ENSKMAG00000012497)	mcm5 (ENSKMAG00000012432)	hmox1a (ENSKMAG00000012409)	foxred2 (ENSKMAG00000012353)	ankrd54 (ENSKMAG00000012297)	hmgxb4a (ENSKMAG00000012268)	si:dkeyp-69e1.8 (ENSKMAG00000012252)	foxd7 (ENSKMAG00000012240)	s1pr5a (ENSKMAG00000012231) #22	spc24 (ENSKMAG00000012212)	kri1 (ENSKMAG00000012111) #20	ldlra (ENSKMAG00000012041)	smarca4a (ENSKMAG00000011931) #7	ATG4D (ENSKMAG00000011884) #21	MAST1 (ENSKMAG00000011861)	ENSKMAG00000011834	rtbdn (ENSKMAG00000011820)	junbb (ENSKMAG00000011813)	hook2 (ENSKMAG00000011755)	ENSKMAG00000011717	trir (ENSKMAG00000011701)	ubn2b (ENSKMAG00000011657)	rpsa (ENSKMAG00000011591)	slc25a38a (ENSKMAG00000011567)
Turquoise killifish	MODERN SPECIES	1612	ENSNFUG00015017199	grb2b (ENSNFUG00015017212)	USP43 (ENSNFUG00015017221)	NTN1B (ENSNFUG00015017236)	ENSNFUG00015017246	mfsd6l (ENSNFUG00015017252)	TOM1 (ENSNFUG00015017264)	GCAT (ENSNFUG00015017282)	mcm5 (ENSNFUG00015017292)	hmox1a (ENSNFUG00015017310)	foxred2 (ENSNFUG00015017313)	ankrd54 (ENSNFUG00015017321)	HMGXB4 (ENSNFUG00015017370)	ENSNFUG00015017401	foxd7 (ENSNFUG00015017403)	S1PR5A (ENSNFUG00015017411) #22	SPC24 (ENSNFUG00015017416)	KRI1 (ENSNFUG00015017426) #20	LDLR (ENSNFUG00015017463)	ENSNFUG00015017623	ENSNFUG00015017627	smarca4a (ENSNFUG00015017646) #7	ATG4D (ENSNFUG00015017721) #21	MAST1 (ENSNFUG00015000406)	ENSNFUG00015000831	rtbdn (ENSNFUG00015000833)	hook2 (ENSNFUG00015000942)	C3H19ORF43 (ENSNFUG00015001354)	UBN2 (ENSNFUG00015001361)	RPSA (ENSNFUG00015001374)	slc25a38a (ENSNFUG00015001388)
Cyprinodontoidei	ANCESTRAL SPECIES	22	ENSGT00940000155738	ENSGT00940000158772.b	ENSGT00940000153882.a.b.a	ENSGT00530000063753.B.d	ENSGT00530000063599.A	ENSGT00440000038745.a.a.b	ENSGT00940000156865.b	ENSGT00940000155729	ENSGT01050000244824.G	ENSGT00390000017673.b.l	ENSGT00640000091519	ENSGT00940000157805	ENSGT00390000012436.g	ENSGT00940000165343.c.b	ENSGT00940000157140.b.b.b	ENSGT01050000244887.A.a.a.a.j #22	ENSGT00390000005584	ENSGT00390000005605 #20	ENSGT00940000154819.a.b.c.a	ENSGT00940000177737	ENSGT00940000156887.a #7	ENSGT00530000063000.a.a.b.i #21	ENSGT00940000157700.d	ENSGT00950000183144.B	ENSGT00940000161195.a.a	ENSGT00940000160152	ENSGT00390000012267	ENSGT00940000155858.e	ENSGT00950000183099	ENSGT00550000075117.m.b	ENSGT00940000155632.o
Poeciliinae	ANCESTRAL SPECIES	1	ENSGT00940000155738	ENSGT00940000158772.b	ENSGT00940000153882.a.b.a	ENSGT00530000063753.B.d	ENSGT00530000063599.A	ENSGT00440000038745.a.a.b	ENSGT00940000156865.b	ENSGT00940000155729	ENSGT01050000244824.G	ENSGT00390000017673.b.l	ENSGT00640000091519	ENSGT00940000157805	ENSGT00390000012436.g	ENSGT00940000165343.c.b	ENSGT00940000157140.b.b.b	ENSGT01050000244887.A.a.a.a.j #22	ENSGT00390000005584	ENSGT00390000005605 #20	ENSGT00940000154819.a.b.c.a	ENSGT00940000177737	ENSGT00940000156887.a #7	ENSGT00530000063000.a.a.b.i #21	ENSGT00940000157700.d	ENSGT00950000183144.B	ENSGT00940000161195.a.a	ENSGT00940000160152	ENSGT00390000012267	ENSGT00940000155858.e	ENSGT00950000183099	ENSGT00550000075117.m.b	ENSGT00940000155632.o
Poecilia	ANCESTRAL SPECIES	18	ENSGT00940000155738	ENSGT00940000158772.b	ENSGT00940000153882.a.b.a	ENSGT00530000063753.B.d	ENSGT00530000063599.A	ENSGT00440000038745.a.a.b	ENSGT00940000156865.b	ENSGT00940000155729	ENSGT01050000244824.G	ENSGT00390000017673.b.l	ENSGT00640000091519	ENSGT00940000157805	ENSGT00390000012436.g	ENSGT00940000165343.c.b	ENSGT00940000157140.b.b.b	ENSGT01050000244887.A.a.a.a.j #22	ENSGT00390000005584	ENSGT00390000005605 #20	ENSGT00940000154819.a.b.c.a	ENSGT00940000177737	ENSGT00940000156887.a #7	ENSGT00530000063000.a.a.b.i #21	ENSGT00940000157700.d	ENSGT00950000183144.B	ENSGT00940000161195.a.a	ENSGT00940000160152	ENSGT00390000012267	ENSGT00940000155858.e	ENSGT00950000183099	ENSGT00550000075117.m.b	ENSGT00940000155632.o
NAME_6	ANCESTRAL SPECIES	40	ENSGT00940000155738	ENSGT00940000158772.b	ENSGT00940000153882.a.b.a	ENSGT00530000063753.B.d	ENSGT00530000063599.A	ENSGT00440000038745.a.a.b	ENSGT00940000156865.b	ENSGT00940000155729	ENSGT01050000244824.G	ENSGT00390000017673.b.l	ENSGT00640000091519	ENSGT00940000157805	ENSGT00390000012436.g	ENSGT00940000165343.c.b	ENSGT00940000157140.b.b.b	ENSGT01050000244887.A.a.a.a.j #22	ENSGT00390000005584	ENSGT00390000005605 #20	ENSGT00940000154819.a.b.c.a	ENSGT00940000177737	ENSGT00940000156887.a #7	ENSGT00530000063000.a.a.b.i #21	ENSGT00940000157700.d	ENSGT00950000183144.B	ENSGT00940000161195.a.a	ENSGT00940000160152	ENSGT00390000012267	ENSGT00940000155858.e	ENSGT00950000183099	ENSGT00550000075117.m.b	ENSGT00940000155632.o
Sailfin molly	MODERN SPECIES	1562				ENSPLAG00000000710	mfsd6l (ENSPLAG00000005903)	zgc:171844 (ENSPLAG00000005901)	ENSPLAG00000005882	gcat (ENSPLAG00000005875)	mcm5 (ENSPLAG00000005853)	hmox1a (ENSPLAG00000005805)	foxred2 (ENSPLAG00000005577)	ankrd54 (ENSPLAG00000000106)	hmgxb4a (ENSPLAG00000005553)	si:dkeyp-69e1.8 (ENSPLAG00000005544)	foxd7 (ENSPLAG00000005529)	s1pr5a (ENSPLAG00000005523) #22	spc24 (ENSPLAG00000005511)	kri1 (ENSPLAG00000005491) #20
Amazon molly	MODERN SPECIES	364	grb2b (ENSPFOG00000005204)	ENSPFOG00000005294	ntn1b (ENSPFOG00000005483)	ENSPFOG00000005665	mfsd6l (ENSPFOG00000020946)	zgc:171844 (ENSPFOG00000005970)	tom1 (ENSPFOG00000006020)	gcat (ENSPFOG00000006148)	mcm5 (ENSPFOG00000006454)	hmox1a (ENSPFOG00000006716)	foxred2 (ENSPFOG00000006801)	ankrd54 (ENSPFOG00000006969)	hmgxb4a (ENSPFOG00000007097)	si:dkeyp-69e1.8 (ENSPFOG00000007214)	foxd7 (ENSPFOG00000020947)	s1pr5a (ENSPFOG00000020948) #22	spc24 (ENSPFOG00000007227)	kri1 (ENSPFOG00000007297) #20	ldlra (ENSPFOG00000007522)	smarca4a (ENSPFOG00000007892) #7	ATG4D (ENSPFOG00000008224) #21	ENSPFOG00000008245	rtbdn (ENSPFOG00000008571)	junbb (ENSPFOG00000008616)
Guppy	MODERN SPECIES	460	BPTF (ENSPREG00000015243)	grb2b (ENSPREG00000015203)	ENSPREG00000015179	ntn1b (ENSPREG00000015138)	ENSPREG00000015082	mfsd6l (ENSPREG00000015066)	zgc:171844 (ENSPREG00000015057)	ENSPREG00000015041	gcat (ENSPREG00000015026)	ENSPREG00000015020	hmox1a (ENSPREG00000015010)	foxred2 (ENSPREG00000014993)	ankrd54 (ENSPREG00000014877)	hmgxb4a (ENSPREG00000014834)	foxd7 (ENSPREG00000014826)	s1pr5a (ENSPREG00000014811) #22	spc24 (ENSPREG00000014799)	kri1 (ENSPREG00000014731) #20	ldlra (ENSPREG00000014707)	smarca4a (ENSPREG00000014608) #7	ATG4D (ENSPREG00000014549) #21	MAST1 (ENSPREG00000014461)	junbb (ENSPREG00000014425)	rtbdn (ENSPREG00000014383)	hook2 (ENSPREG00000014349)	trir (ENSPREG00000014314)	ubn2b (ENSPREG00000014253)	ENSPREG00000014229	rpsa (ENSPREG00000014208)	slc25a38a (ENSPREG00000014185)	MYH9 (ENSPREG00000014041)
Platyfish	MODERN SPECIES	7	grb2b (ENSXMAG00000004985)	ENSXMAG00000008358	ntn1b (ENSXMAG00000014525)	ENSXMAG00000014507	mfsd6l (ENSXMAG00000020358)	zgc:171844 (ENSXMAG00000021641)	ENSXMAG00000004607	gcat (ENSXMAG00000004589)	mcm5 (ENSXMAG00000004527)	hmox1a (ENSXMAG00000021191)	foxred2 (ENSXMAG00000004517)	ankrd54 (ENSXMAG00000004508)	hmgxb4a (ENSXMAG00000004489)	si:dkeyp-69e1.8 (ENSXMAG00000004487)	foxd7 (ENSXMAG00000022105)	s1pr5a (ENSXMAG00000019997) #22	spc24 (ENSXMAG00000004479)	kri1 (ENSXMAG00000004461) #20	ldlra (ENSXMAG00000006284)	smarca4a (ENSXMAG00000006321) #7	ATG4D (ENSXMAG00000009160) #21	MAST1 (ENSXMAG00000009142)	rtbdn (ENSXMAG00000021867)	hook2 (ENSXMAG00000009113)	trir (ENSXMAG00000009111)	ubn2b (ENSXMAG00000009106)	rpsa (ENSXMAG00000009095)	slc25a38a (ENSXMAG00000009093)	MYH9 (ENSXMAG00000008955)	txn2 (ENSXMAG00000021471)	ENSXMAG00000008657
NAME_4	ANCESTRAL SPECIES	77	ENSGT00940000155738	ENSGT00940000158772.b	ENSGT00940000153882.a.b.a	ENSGT00530000063753.B.d	ENSGT00530000063599.A	ENSGT00440000038745.a.a.b	ENSGT00940000156865.b	ENSGT00940000155729	ENSGT01050000244824.G	ENSGT00390000017673.b.l	ENSGT00640000091519	ENSGT00940000157805	ENSGT00390000012436.g	ENSGT00940000165343.c.b	ENSGT00940000157140.b.b.b	ENSGT01050000244887.A.a.a.a.j #22	ENSGT00390000005605 #20	ENSGT00940000154819.a.b.c.a	ENSGT00940000156887.a #7	ENSGT00530000063000.a.a.b.i #21	ENSGT00940000157700.d	ENSGT00950000183144.B	ENSGT00940000161195.a.a	ENSGT00940000160152	ENSGT00390000012267	ENSGT00940000155858.e	ENSGT00950000183099	ENSGT00550000075117.m.b	ENSGT00940000155632.o	ENSGT00530000064086	ENSGT00940000165172.a
Mummichog	MODERN SPECIES	2245	ENSFHEG00000000822	ntn1b (ENSFHEG00000010775)	PIK3R5 (ENSFHEG00000010740)	mfsd6l (ENSFHEG00000010726)	zgc:171844 (ENSFHEG00000010713)	tom1 (ENSFHEG00000010571)	gcat (ENSFHEG00000010474)	mcm5 (ENSFHEG00000010419)	hmox1a (ENSFHEG00000010353)	foxred2 (ENSFHEG00000010341)	ankrd54 (ENSFHEG00000010317)	hmgxb4a (ENSFHEG00000010296)	si:dkeyp-69e1.8 (ENSFHEG00000010271)	foxd7 (ENSFHEG00000010262)	spc24 (ENSFHEG00000010254)	s1pr5a (ENSFHEG00000010242) #22	kri1 (ENSFHEG00000010230) #20	ldlra (ENSFHEG00000010208)	smarca4a (ENSFHEG00000010182) #7	ATG4D (ENSFHEG00000010060) #21	MAST1 (ENSFHEG00000010045)	rtbdn (ENSFHEG00000009971)	junbb (ENSFHEG00000009954)	hook2 (ENSFHEG00000009928)	trir (ENSFHEG00000009862)	ubn2b (ENSFHEG00000009890)	rpsa (ENSFHEG00000009847)	slc25a38a (ENSFHEG00000009834)	MYH9 (ENSFHEG00000009825)	txn2 (ENSFHEG00000009742)	ENSFHEG00000009726
Sheepshead minnow	MODERN SPECIES	606	ENSCVAG00000002081	ENSCVAG00000002087	ntn1b (ENSCVAG00000002091)	ENSCVAG00000002105	mfsd6l (ENSCVAG00000002114)	zgc:171844 (ENSCVAG00000002122)	tom1 (ENSCVAG00000002134)	gcat (ENSCVAG00000002140)	mcm5 (ENSCVAG00000002158)	hmox1a (ENSCVAG00000002165)	foxred2 (ENSCVAG00000002176)	ankrd54 (ENSCVAG00000002186)	hmgxb4a (ENSCVAG00000002197)	si:dkeyp-69e1.8 (ENSCVAG00000002199)	foxd7 (ENSCVAG00000002203)	s1pr5a (ENSCVAG00000002205) #22
Oryzias	ANCESTRAL SPECIES		ENSGT00940000155738	ENSGT00940000158772.b	ENSGT00940000153882.a.b.a	ENSGT00530000063753.B.d	ENSGT00530000063599.A	ENSGT00440000038745.a.a.b	ENSGT00940000156865.b	ENSGT00940000155729	ENSGT01050000244824.G	ENSGT00390000017673.b.l	ENSGT00640000091519	ENSGT00940000157805	ENSGT00390000012436.g	ENSGT00940000165343.c.b	ENSGT00940000157140.b.b.b	ENSGT01050000244887.A.a.a.a.j #22	ENSGT00390000005584	ENSGT00390000005605 #20	ENSGT00940000154819.a.b.c.a	ENSGT00940000177737	ENSGT00940000156887.a #7	ENSGT00530000063000.a.a.b.i #21	ENSGT00940000157700.d	ENSGT00950000183144.B	ENSGT00940000161195.a.a	ENSGT00940000160152	ENSGT00390000012267	ENSGT00940000155858.e	ENSGT00950000183099	ENSGT00550000075117.m.b	ENSGT00940000155632.o
Oryzias_b	ANCESTRAL SPECIES	42	ENSGT00940000154830.c	ENSGT01050000244891.E.a.b	ENSGT00940000155563.k.a	ENSGT00940000154705.A.a	ENSGT00940000153578.A.e	ENSGT00390000015579.a.b	ENSGT00940000155774.b	ENSGT01010000222553	ENSGT00940000155083.a.c	ENSGT00940000157534.a.b	ENSGT00950000182961.a.b.b	ENSGT00390000013260.A.b.a	ENSGT00390000003753	ENSGT00940000160728.j	ENSGT01000000214705	ENSGT01050000244887.A.a.a.a.j #22	ENSGT00390000005584	ENSGT00390000005605 #20	ENSGT00940000154819.a.b.c.a	ENSGT00940000177737	ENSGT00940000156887.a #7	ENSGT00530000063000.a.a.b.i #21	ENSGT00940000157700.d	ENSGT00950000183144.B	ENSGT00940000161195.a.a	ENSGT00940000160152	ENSGT00390000012267	ENSGT00940000155858.e	ENSGT00950000183099	ENSGT00550000075117.m.b	ENSGT00940000155632.o
Indian medaka	MODERN SPECIES	9	smurf2 (ENSOMEG00000008441)	ddx5 (ENSOMEG00000008354)	ENSOMEG00000008269	AANAT (ENSOMEG00000008215)	MYH10 (ENSOMEG00000008175)	ENSOMEG00000008084	ddx47 (ENSOMEG00000008065)	wbp11 (ENSOMEG00000008020)	ENSOMEG00000007962	ENSOMEG00000007909	GPRC5D (ENSOMEG00000007877)	ENSOMEG00000007862	ENSOMEG00000007838	PLEKHF1 (ENSOMEG00000007830)	ENSOMEG00000007807	s1pr5a (ENSOMEG00000007746) #22	spc24 (ENSOMEG00000007738)	kri1 (ENSOMEG00000007717) #20	ldlra (ENSOMEG00000007607)	ENSOMEG00000007516	smarca4a (ENSOMEG00000007486) #7	ENSOMEG00000007418	ENSOMEG00000007404	ENSOMEG00000007390 #21	ENSOMEG00000007367	EMP1 (ENSOMEG00000001045)	GSG1 (ENSOMEG00000000176)	ENSOMEG00000007278	GRIN2B (ENSOMEG00000007238)	FMC1 (ENSOMEG00000007175)	ENSOMEG00000007164
Javanese ricefish	MODERN SPECIES	22	BPTF (ENSOJAG00000004067)	kpna2 (ENSOJAG00000004010)	smurf2 (ENSOJAG00000003743)	ddx5 (ENSOJAG00000003430)	ENSOJAG00000003369	AANAT (ENSOJAG00000003354)	ddx47 (ENSOJAG00000002783)	wbp11 (ENSOJAG00000002768)	ENSOJAG00000002748	ENSOJAG00000002737	GPRC5D (ENSOJAG00000002725)	ENSOJAG00000002708	ENSOJAG00000002697	PLEKHF1 (ENSOJAG00000002687)	ENSOJAG00000002684	s1pr5a (ENSOJAG00000002679) #22	spc24 (ENSOJAG00000002675)	ENSOJAG00000002621	GADD45GIP1 (ENSOJAG00000002181)	ENSOJAG00000002150	ENSOJAG00000002140 #21	MAST1 (ENSOJAG00000001680)	rtbdn (ENSOJAG00000001580)	junbb (ENSOJAG00000001566)	trir (ENSOJAG00000001541)	ubn2b (ENSOJAG00000001517)	RPSA (ENSOJAG00000001492)	slc25a38a (ENSOJAG00000001481)	txn2 (ENSOJAG00000000925)	ENSOJAG00000000920	DDX39A (ENSOJAG00000000913)
Oryzias_a	ANCESTRAL SPECIES	20	ENSGT00940000155738	ENSGT00940000158772.b	ENSGT00940000153882.a.b.a	ENSGT00530000063753.B.d	ENSGT00530000063599.A	ENSGT00440000038745.a.a.b	ENSGT00940000156865.b	ENSGT00940000155729	ENSGT01050000244824.G	ENSGT00390000017673.b.l	ENSGT00640000091519	ENSGT00940000157805	ENSGT00390000012436.g	ENSGT00940000165343.c.b	ENSGT00940000157140.b.b.b	ENSGT01050000244887.A.a.a.a.j #22	ENSGT00390000005584	ENSGT00390000005605.i.a #20	ENSGT00940000154819.a.b.c.a	ENSGT00390000005605.i.b #20	ENSGT00940000156887.a #7	ENSGT00530000063000.a.a.b.i #21	ENSGT00940000157700.d	ENSGT00950000183144.B	ENSGT00940000161195.a.a	ENSGT00940000160152	ENSGT00940000154912.u.b	ENSGT00940000165172.a	ENSGT00530000064086	ENSGT00940000155632.o	ENSGT00550000075117.m.b
Chinese medaka	MODERN SPECIES	1074	ddx5 (ENSOSIG00000017077)	smurf2 (ENSOSIG00000017049)	kpna2 (ENSOSIG00000017046)	BPTF (ENSOSIG00000017045)	grb2b (ENSOSIG00000017042)	ENSOSIG00000017039	ntn1b (ENSOSIG00000017038)	PIK3R5 (ENSOSIG00000017034)	mfsd6l (ENSOSIG00000017025)	zgc:171844 (ENSOSIG00000017023)	gcat (ENSOSIG00000017022)	mcm5 (ENSOSIG00000017010)	hmox1a (ENSOSIG00000017004)	foxred2 (ENSOSIG00000016999)	ankrd54 (ENSOSIG00000016998)	s1pr5a (ENSOSIG00000016995) #22
Japanese Medaka HdrR	MODERN SPECIES	22	ENSORLG00000024072	ENSORLG00000024310	ntn1b (ENSORLG00000015276)	ENSORLG00000015305	mfsd6l (ENSORLG00000023268)	zgc:171844 (ENSORLG00000029943)	tom1 (ENSORLG00000015311)	gcat (ENSORLG00000010542)	mcm5 (ENSORLG00000010517)	hmox1a (ENSORLG00000010457)	foxred2 (ENSORLG00000015336)	ankrd54 (ENSORLG00000015347)	hmgxb4a (ENSORLG00000015359)	si:dkeyp-69e1.8 (ENSORLG00000015364)	foxd7 (ENSORLG00000023860)	s1pr5a (ENSORLG00000015375) #22	spc24 (ENSORLG00000015391)	kri1 (ENSORLG00000015403) #20	ENSORLG00000025827 #20	kri1 (ENSORLG00000030111) #20	ENSORLG00000027952	ENSORLG00000019647 #20	ENSORLG00000021901	ENSORLG00000028274 #20	ENSORLG00000015398	ENSORLG00000023163	ENSORLG00000029111 #20	ENSORLG00000025742 #20	ENSORLG00000022846	ENSORLG00000023944	ENSORLG00000025256 #20
Ovalentaria_B	ANCESTRAL SPECIES		ENSGT00940000158772.b	ENSGT00940000153882.a.b.a	ENSGT00530000063753.B.d	ENSGT00530000063753.A.b	ENSGT00530000063599.A	ENSGT00440000038745.a.a.b	ENSGT00940000156865.b	ENSGT00940000155729	ENSGT01050000244824.G	ENSGT00390000017673.b.l	ENSGT00640000091519	ENSGT00940000157805	ENSGT00390000012436.g	ENSGT00940000165343.c.b	ENSGT00940000157140.b.b.b	ENSGT01050000244887.A.a.a.a.j #22	ENSGT00390000005584	ENSGT00390000005605 #20	ENSGT00940000154819.a.b.c.a	ENSGT00940000156887.a #7	ENSGT00530000063000.a.a.b.i #21	ENSGT00940000157700.d	ENSGT00950000183144.B	ENSGT00940000161195.a.a	ENSGT00940000160152	ENSGT00390000012267	ENSGT00940000155858.e	ENSGT00950000183099	ENSGT00550000075117.m.b	ENSGT00940000155632.o	ENSGT00530000064086
Cichlidae	ANCESTRAL SPECIES	19	ENSGT00940000158772.b	ENSGT00940000153882.a.b.a	ENSGT00530000063753.B.d	ENSGT00530000063753.A.b	ENSGT00530000063599.A	ENSGT00440000038745.a.a.b	ENSGT00940000156865.b	ENSGT00940000155729	ENSGT01050000244824.G	ENSGT00390000017673.b.l	ENSGT00640000091519	ENSGT00940000157805	ENSGT00390000012436.g	ENSGT00940000165343.c.b	ENSGT00940000157140.b.b.b	ENSGT01050000244887.A.a.a.a.j #22	ENSGT00390000005584	ENSGT00390000005605 #20	ENSGT00940000154819.a.b.c.a	ENSGT00940000156887.a #7	ENSGT00530000063000.a.a.b.i #21	ENSGT00940000157700.d	ENSGT00950000183144.B	ENSGT00940000161195.a.a	ENSGT00940000160152	ENSGT00390000012267	ENSGT00940000155858.e	ENSGT00950000183099	ENSGT00550000075117.m.b	ENSGT00940000155632.o	ENSGT00530000064086
Pseudocrenilabrinae	ANCESTRAL SPECIES	1	ENSGT00940000153882.a.b.a	ENSGT00530000063753.B.d	ENSGT00530000063753.A.b	ENSGT00530000063599.A	ENSGT00440000038745.a.a.b	ENSGT00940000156865.b	ENSGT00940000155729	ENSGT01050000244824.G	ENSGT00390000017673.b.l	ENSGT00940000163467.a.b.b.b	ENSGT00640000091519	ENSGT00940000157805	ENSGT00390000012436.g	ENSGT00940000165343.c.b	ENSGT00940000157140.b.b.b	ENSGT01050000244887.A.a.a.a.j #22	ENSGT00390000005584	ENSGT00390000005605 #20	ENSGT00940000154819.a.b.c.a	ENSGT00940000156887.a #7	ENSGT00530000063000.a.a.b.i #21	ENSGT00940000157700.d	ENSGT00950000183144.B	ENSGT00940000161195.a.a	ENSGT00940000160152	ENSGT00390000012267	ENSGT00940000155858.e	ENSGT00950000183099	ENSGT00550000075117.m.b	ENSGT00940000155632.o	ENSGT00530000064086
Pseudocrenilabrinae_A	ANCESTRAL SPECIES	27	ENSGT00940000153882.a.b.a	ENSGT00530000063753.B.d	ENSGT00530000063753.A.b	ENSGT00530000063599.A	ENSGT00440000038745.a.a.b	ENSGT00940000156865.b	ENSGT00940000155729	ENSGT01050000244824.G	ENSGT00390000017673.b.l	ENSGT00940000163467.a.b.b.b	ENSGT00640000091519	ENSGT00940000157805	ENSGT00390000012436.g	ENSGT00940000165343.c.b	ENSGT00940000157140.b.b.b	ENSGT01050000244887.A.a.a.a.j #22	ENSGT00390000005584	ENSGT00390000005605 #20	ENSGT00940000154819.a.b.c.a	ENSGT00940000156887.a #7	ENSGT00530000063000.a.a.b.i #21	ENSGT00940000157700.d	ENSGT00950000183144.B	ENSGT00940000161195.a.a	ENSGT00940000160152	ENSGT00390000012267	ENSGT00940000155858.e	ENSGT00950000183099	ENSGT00550000075117.m.b	ENSGT00940000155632.o	ENSGT00530000064086
Haplochromini	ANCESTRAL SPECIES	32	ENSGT00940000153882.a.b.a	ENSGT00530000063753.B.d	ENSGT00530000063753.A.b	ENSGT00530000063599.A	ENSGT00440000038745.a.a.b	ENSGT00940000156865.b	ENSGT00940000155729	ENSGT01050000244824.G	ENSGT00390000017673.b.l	ENSGT00940000163467.a.b.b.b	ENSGT00640000091519	ENSGT00940000157805	ENSGT00390000012436.g	ENSGT00940000165343.c.b	ENSGT00940000157140.b.b.b	ENSGT01050000244887.A.a.a.a.j #22	ENSGT00390000005584	ENSGT00390000005605 #20	ENSGT00940000154819.a.b.c.a	ENSGT00940000156887.a #7	ENSGT00530000063000.a.a.b.i #21	ENSGT00940000157700.d	ENSGT00950000183144.B	ENSGT00940000161195.a.a	ENSGT00940000160152	ENSGT00390000012267	ENSGT00940000155858.e	ENSGT00950000183099	ENSGT00550000075117.m.b	ENSGT00940000155632.o	ENSGT00530000064086
Burton s mouthbrooder	MODERN SPECIES	350	ntn1b (ENSHBUG00000021688)	PIK3R5 (ENSHBUG00000021650)	ENSHBUG00000021620	mfsd6l (ENSHBUG00000021603)	zgc:171844 (ENSHBUG00000021599)	tom1 (ENSHBUG00000021554)	gcat (ENSHBUG00000021527)	mcm5 (ENSHBUG00000021496)	hmox1a (ENSHBUG00000021422)	ENSHBUG00000021412	foxred2 (ENSHBUG00000021404)	ankrd54 (ENSHBUG00000021341)	hmgxb4a (ENSHBUG00000021327)	si:dkeyp-69e1.8 (ENSHBUG00000021253)	foxd7 (ENSHBUG00000021244)	s1pr5a (ENSHBUG00000021232) #22	spc24 (ENSHBUG00000021224)	kri1 (ENSHBUG00000021212) #20	ldlra (ENSHBUG00000021197)	smarca4a (ENSHBUG00000021172) #7	ATG4D (ENSHBUG00000020894) #21	MAST1 (ENSHBUG00000020881)	ENSHBUG00000020862	rtbdn (ENSHBUG00000020722)	junbb (ENSHBUG00000020693)	hook2 (ENSHBUG00000020665)	ubn2b (ENSHBUG00000020646)	trir (ENSHBUG00000000633)	rpsa (ENSHBUG00000020630)	slc25a38a (ENSHBUG00000020594)	MYH9 (ENSHBUG00000020558)
Haplochromini_A	ANCESTRAL SPECIES	34	ENSGT00940000153882.a.b.a	ENSGT00530000063753.B.d	ENSGT00530000063753.A.b	ENSGT00530000063599.A	ENSGT00440000038745.a.a.b	ENSGT00940000156865.b	ENSGT00940000155729	ENSGT01050000244824.G	ENSGT00390000017673.b.l	ENSGT00940000163467.a.b.b.b	ENSGT00640000091519	ENSGT00940000157805	ENSGT00390000012436.g	ENSGT00940000165343.c.b	ENSGT00940000157140.b.b.b	ENSGT01050000244887.A.a.a.a.j #22	ENSGT00390000005584	ENSGT00390000005605 #20	ENSGT00940000154819.a.b.c.a	ENSGT00940000156887.a #7	ENSGT00530000063000.a.a.b.i #21	ENSGT00940000157700.d	ENSGT00950000183144.B	ENSGT00940000161195.a.a	ENSGT00940000160152	ENSGT00390000012267	ENSGT00940000155858.e	ENSGT00950000183099	ENSGT00550000075117.m.b	ENSGT00940000155632.o	ENSGT00530000064086
Haplochromini_B	ANCESTRAL SPECIES	31	ENSGT00940000153882.a.b.a	ENSGT00530000063753.B.d	ENSGT00530000063753.A.b	ENSGT00530000063599.A	ENSGT00440000038745.a.a.b	ENSGT00940000156865.b	ENSGT00940000155729	ENSGT01050000244824.G	ENSGT00390000017673.b.l	ENSGT00940000163467.a.b.b.b	ENSGT00640000091519	ENSGT00940000157805	ENSGT00390000012436.g	ENSGT00940000165343.c.b	ENSGT00940000157140.b.b.b	ENSGT01050000244887.A.a.a.a.j #22	ENSGT00390000005584	ENSGT00390000005605 #20	ENSGT00940000154819.a.b.c.a	ENSGT00940000156887.a #7	ENSGT00530000063000.a.a.b.i #21	ENSGT00940000157700.d	ENSGT00950000183144.B	ENSGT00940000161195.a.a	ENSGT00940000160152	ENSGT00390000012267	ENSGT00940000155858.e	ENSGT00950000183099	ENSGT00550000075117.m.b	ENSGT00940000155632.o	ENSGT00530000064086
Zebra mbuna	MODERN SPECIES	1107	USP43 (ENSMZEG00005004383)	ntn1b (ENSMZEG00005004358)	PIK3R5 (ENSMZEG00005004332)	ENSMZEG00005004310	mfsd6l (ENSMZEG00005004295)	tom1 (ENSMZEG00005004252)	gcat (ENSMZEG00005004192)	mcm5 (ENSMZEG00005004143)	hmox1a (ENSMZEG00005004189)	ENSMZEG00005004130	foxred2 (ENSMZEG00005004108)	ankrd54 (ENSMZEG00005004094)	hmgxb4a (ENSMZEG00005004079)	si:dkeyp-69e1.8 (ENSMZEG00005004070)	foxd7 (ENSMZEG00005004053)	s1pr5a (ENSMZEG00005004045) #22	spc24 (ENSMZEG00005004038)	kri1 (ENSMZEG00005004013) #20	ldlra (ENSMZEG00005003998)	smarca4a (ENSMZEG00005003889) #7	ATG4D (ENSMZEG00005003809) #21	MAST1 (ENSMZEG00005003727)	ENSMZEG00005003701	rtbdn (ENSMZEG00005003679)	junbb (ENSMZEG00005003658)	hook2 (ENSMZEG00005003284)	trir (ENSMZEG00005003258)	ubn2b (ENSMZEG00005003197)	rpsa (ENSMZEG00005003155)	slc25a38a (ENSMZEG00005003047)	MYH9 (ENSMZEG00005002935)
Eastern happy	MODERN SPECIES	16	ntn1b (ENSACLG00000018659)	ENSACLG00000018682	ENSACLG00000018696	mfsd6l (ENSACLG00000018727)	zgc:171844 (ENSACLG00000018735)	tom1 (ENSACLG00000018763)	gcat (ENSACLG00000018826)	mcm5 (ENSACLG00000018865)	hmox1a (ENSACLG00000018952)	ENSACLG00000018971	foxred2 (ENSACLG00000018978)	ankrd54 (ENSACLG00000019008)	hmgxb4a (ENSACLG00000019023)	si:dkeyp-69e1.8 (ENSACLG00000019084)	foxd7 (ENSACLG00000019118)	s1pr5a (ENSACLG00000000124) #22	spc24 (ENSACLG00000000132)	kri1 (ENSACLG00000000135) #20	ldlra (ENSACLG00000000151)	smarca4a (ENSACLG00000000163) #7	ATG4D (ENSACLG00000000346) #21	MAST1 (ENSACLG00000000372)	ENSACLG00000000427	rtbdn (ENSACLG00000000460)	junbb (ENSACLG00000000469)	ENSACLG00000000499	hook2 (ENSACLG00000000514)	trir (ENSACLG00000000917)	ubn2b (ENSACLG00000000931)	rpsa (ENSACLG00000000951)	slc25a38a (ENSACLG00000000983)
P. nyererei	MODERN SPECIES	376	PIK3R5 (ENSPNYG00000021225)	ENSPNYG00000021262	mfsd6l (ENSPNYG00000021280)	zgc:171844 (ENSPNYG00000021295)	ENSPNYG00000021311	gcat (ENSPNYG00000021324)	ENSPNYG00000000385	ENSPNYG00000000388	hmox1a (ENSPNYG00000000397)	ENSPNYG00000000401	foxred2 (ENSPNYG00000000407)	ankrd54 (ENSPNYG00000000428)	hmgxb4a (ENSPNYG00000000445)	si:dkeyp-69e1.8 (ENSPNYG00000000483)	foxd7 (ENSPNYG00000000490)	s1pr5a (ENSPNYG00000000501) #22	spc24 (ENSPNYG00000000511)	kri1 (ENSPNYG00000000553) #20	ldlra (ENSPNYG00000000697)	smarca4a (ENSPNYG00000000717) #7	ATG4D (ENSPNYG00000000837) #21	MAST1 (ENSPNYG00000000851)	ENSPNYG00000000905	rtbdn (ENSPNYG00000000986)	junbb (ENSPNYG00000001015)	hook2 (ENSPNYG00000001067)	trir (ENSPNYG00000001295)	ubn2b (ENSPNYG00000001273)	rpsa (ENSPNYG00000001305)	slc25a38a (ENSPNYG00000001346)	MYH9 (ENSPNYG00000001361)
Lyretail cichlid	MODERN SPECIES	423							ENSNBRG00000012108	mcm5 (ENSNBRG00000012070)	hmox1a (ENSNBRG00000011786)	ENSNBRG00000011779	foxred2 (ENSNBRG00000011754)	ankrd54 (ENSNBRG00000011732)	hmgxb4a (ENSNBRG00000011693)	si:dkeyp-69e1.8 (ENSNBRG00000011683)	foxd7 (ENSNBRG00000011668)	s1pr5a (ENSNBRG00000011662) #22	spc24 (ENSNBRG00000011610)	kri1 (ENSNBRG00000011580) #20	ldlra (ENSNBRG00000011554)	smarca4a (ENSNBRG00000011457) #7	ATG4D (ENSNBRG00000011391) #21	MAST1 (ENSNBRG00000011320)	rtbdn (ENSNBRG00000011306)	junbb (ENSNBRG00000011282)	hook2 (ENSNBRG00000010993)	trir (ENSNBRG00000010941)	ubn2b (ENSNBRG00000010895)	rpsa (ENSNBRG00000010854)	slc25a38a (ENSNBRG00000010824)	MYH9 (ENSNBRG00000010730)	ENSNBRG00000010711
Nile tilapia	MODERN SPECIES	16	USP43 (ENSONIG00000029045)	ntn1b (ENSONIG00000008254)	ENSONIG00000008249	ENSONIG00000008242	zgc:171844 (ENSONIG00000038216)	tom1 (ENSONIG00000008241)	gcat (ENSONIG00000008236)	mcm5 (ENSONIG00000008233)	hmox1a (ENSONIG00000036898)	ENSONIG00000021075	foxred2 (ENSONIG00000008228)	ankrd54 (ENSONIG00000008226)	hmgxb4a (ENSONIG00000008225)	si:dkeyp-69e1.8 (ENSONIG00000008223)	foxd7 (ENSONIG00000041330)	s1pr5a (ENSONIG00000021073) #22	spc24 (ENSONIG00000008221)	kri1 (ENSONIG00000008218) #20	ldlra (ENSONIG00000008214)	smarca4a (ENSONIG00000008196) #7	ATG4D (ENSONIG00000043096) #21	MAST1 (ENSONIG00000008189)	rtbdn (ENSONIG00000008184)	junbb (ENSONIG00000021072)	hook2 (ENSONIG00000008175)	trir (ENSONIG00000038123)	ubn2b (ENSONIG00000008172)	rpsa (ENSONIG00000008163)	slc25a38a (ENSONIG00000008160)	MYH9 (ENSONIG00000008128)	txn2 (ENSONIG00000008126)
Midas cichlid	MODERN SPECIES	80	USP43 (ENSACIG00000022309)	ntn1b (ENSACIG00000022295)	ENSACIG00000022279	ENSACIG00000022268	mfsd6l (ENSACIG00000022258)	zgc:171844 (ENSACIG00000022247)	tom1 (ENSACIG00000022224)	gcat (ENSACIG00000022210)	mcm5 (ENSACIG00000022193)	hmox1a (ENSACIG00000021980)	foxred2 (ENSACIG00000021951)	ankrd54 (ENSACIG00000021835)	hmgxb4a (ENSACIG00000021800)	si:dkeyp-69e1.8 (ENSACIG00000021792)	foxd7 (ENSACIG00000021788)	s1pr5a (ENSACIG00000021777) #22	spc24 (ENSACIG00000021764)	kri1 (ENSACIG00000021726) #20	ldlra (ENSACIG00000021617)	smarca4a (ENSACIG00000021550) #7	ATG4D (ENSACIG00000021464) #21	MAST1 (ENSACIG00000021403)	rtbdn (ENSACIG00000021389)	junbb (ENSACIG00000021369)	hook2 (ENSACIG00000021128)	trir (ENSACIG00000021095)	ubn2b (ENSACIG00000021073)	rpsa (ENSACIG00000021049)	slc25a38a (ENSACIG00000020998)	MYH9 (ENSACIG00000020930)	txn2 (ENSACIG00000020923)
Pomacentridae	ANCESTRAL SPECIES	31	ENSGT00940000180418	ENSGT00940000158772.b	ENSGT00940000153882.a.b.a	ENSGT00530000063753.B.d	ENSGT00530000063599.A	ENSGT00440000038745.a.a.b	ENSGT00940000156865.b	ENSGT00940000155729	ENSGT01050000244824.G	ENSGT00390000017673.b.l	ENSGT00640000091519	ENSGT00940000157805	ENSGT00390000012436.g	ENSGT00940000165343.c.b	ENSGT00940000157140.b.b.b	ENSGT01050000244887.A.a.a.a.j #22	ENSGT00390000005584	ENSGT00390000005605 #20	ENSGT00940000154819.a.b.c.a	ENSGT00940000156887.a #7	ENSGT00530000063000.a.a.b.i #21	ENSGT00940000157700.d	ENSGT00950000183144.B	ENSGT00940000161195.a.a	ENSGT00940000160152	ENSGT00390000012267	ENSGT00940000155858.e	ENSGT00950000183099	ENSGT00550000075117.m.b	ENSGT00940000155632.o	ENSGT00530000064086
Pomacentridae_A	ANCESTRAL SPECIES	21	ENSGT00940000180418	ENSGT00940000158772.b	ENSGT00940000153882.a.b.a	ENSGT00530000063753.B.d	ENSGT00530000063599.A	ENSGT00440000038745.a.a.b	ENSGT00940000156865.b	ENSGT00940000155729	ENSGT01050000244824.G	ENSGT00390000017673.b.l	ENSGT00640000091519	ENSGT00940000157805	ENSGT00390000012436.g	ENSGT00940000165343.c.b	ENSGT00940000157140.b.b.b	ENSGT01050000244887.A.a.a.a.j #22	ENSGT00390000005584	ENSGT00390000005605.k #20	ENSGT00940000154819.a.b.c.a	ENSGT00940000156887.a.c #7	ENSGT00530000063000.a.a.b.i #21	ENSGT00940000157700.d	ENSGT00950000183144.B	ENSGT00940000161195.a.a	ENSGT00940000160152	ENSGT00390000012267	ENSGT00940000155858.e	ENSGT00950000183099	ENSGT00550000075117.m.b	ENSGT00940000155632.o	ENSGT00530000064086
Amphiprion	ANCESTRAL SPECIES	25	ENSGT00940000158772.b	ENSGT01090000260059.a.b.b.b.a.d.a.a.b.b.b	ENSGT00940000153882.a.b.a	ENSGT00530000063753.B.d	ENSGT00530000063599.A	ENSGT00440000038745.a.a.b	ENSGT00940000156865.b	ENSGT00940000155729	ENSGT01050000244824.G	ENSGT00390000017673.b.l	ENSGT00640000091519	ENSGT00940000157805	ENSGT00390000012436.g	ENSGT00940000165343.c.b	ENSGT00940000157140.b.b.b	ENSGT01050000244887.A.a.a.a.j #22	ENSGT00390000005584	ENSGT00390000005605.k #20	ENSGT00940000154819.a.b.c.a	ENSGT00940000156887.a.c #7	ENSGT00530000063000.a.a.b.i #21	ENSGT00940000157700.d	ENSGT00950000183144.B	ENSGT00940000161195.a.a	ENSGT00940000160152	ENSGT00390000012267	ENSGT00940000155858.e	ENSGT00950000183099	ENSGT00550000075117.m.b	ENSGT00940000155632.o	ENSGT00530000064086
Orange clownfish	MODERN SPECIES	5	ENSAPEG00000015011	ENSAPEG00000015047	ntn1b (ENSAPEG00000015091)	ENSAPEG00000015127	mfsd6l (ENSAPEG00000015156)	zgc:171844 (ENSAPEG00000015161)	ENSAPEG00000015184	gcat (ENSAPEG00000015204)	mcm5 (ENSAPEG00000015245)	hmox1a (ENSAPEG00000015298)	foxred2 (ENSAPEG00000015316)	ankrd54 (ENSAPEG00000015351)	hmgxb4a (ENSAPEG00000015362)	si:dkeyp-69e1.8 (ENSAPEG00000015370)	foxd7 (ENSAPEG00000015388)	s1pr5a (ENSAPEG00000015400) #22	spc24 (ENSAPEG00000015408)	kri1 (ENSAPEG00000015417) #20	ldlra (ENSAPEG00000015445)	ENSAPEG00000015536 #7	smarca4a (ENSAPEG00000015559) #7	ENSAPEG00000015638	ATG4D (ENSAPEG00000015658) #21	MAST1 (ENSAPEG00000015668)	rtbdn (ENSAPEG00000015759)	ENSAPEG00000015779	hook2 (ENSAPEG00000015844)	trir (ENSAPEG00000016221)	ubn2b (ENSAPEG00000016235)	rpsa (ENSAPEG00000016294)	slc25a38a (ENSAPEG00000016352)
Clown anemonefish	MODERN SPECIES	1879															ENSAOCG00000007369	s1pr5a (ENSAOCG00000007377) #22	ENSAOCG00000007451	ENSAOCG00000007469	mrpl57 (ENSAOCG00000007480)	KCNH1 (ENSAOCG00000007526)	hhat (ENSAOCG00000007566)	MYOZ1 (ENSAOCG00000007570)	SYNPO2L (ENSAOCG00000007582)	ENSAOCG00000007595	ENSAOCG00000002384
Spiny chromis	MODERN SPECIES	89	ENSAPOG00000002886	ntn1b (ENSAPOG00000002919)	ENSAPOG00000002939	mfsd6l (ENSAPOG00000002951)	zgc:171844 (ENSAPOG00000002988)	tom1 (ENSAPOG00000003037)	gcat (ENSAPOG00000003080)	mcm5 (ENSAPOG00000003163)	hmox1a (ENSAPOG00000003093)	foxred2 (ENSAPOG00000003223)	ankrd54 (ENSAPOG00000003240)	hmgxb4a (ENSAPOG00000003261)	si:dkeyp-69e1.8 (ENSAPOG00000003274)	foxd7 (ENSAPOG00000003284)	ENSAPOG00000003312	s1pr5a (ENSAPOG00000003320) #22	spc24 (ENSAPOG00000003328)	kri1 (ENSAPOG00000003361) #20	ldlra (ENSAPOG00000003428)	smarca4a (ENSAPOG00000003509) #7	ENSAPOG00000003542	ATG4D (ENSAPOG00000003552) #21	ENSAPOG00000003617	rtbdn (ENSAPOG00000003640)	ENSAPOG00000003699
Bicolor damselfish	MODERN SPECIES	1032														si:dkeyp-69e1.8 (ENSSPAG00000003968)	foxd7 (ENSSPAG00000003978)	s1pr5a (ENSSPAG00000003987) #22	spc24 (ENSSPAG00000003995)	kri1 (ENSSPAG00000004023) #20	ldlra (ENSSPAG00000004135)	smarca4a (ENSSPAG00000004248) #7	ENSSPAG00000004418	ATG4D (ENSSPAG00000004473) #21	MAST1 (ENSSPAG00000004488)	ENSSPAG00000004515	rtbdn (ENSSPAG00000004563)	hook2 (ENSSPAG00000004624)
Pinecone sodierfish	MODERN SPECIES	22	ENSMMDG00005006312	ntn1b (ENSMMDG00005006316)	ENSMMDG00005006322	mfsd6l (ENSMMDG00005006327)	zgc:171844 (ENSMMDG00005006328)	tom1 (ENSMMDG00005006330)	gcat (ENSMMDG00005006353)	nudcd3 (ENSMMDG00005006377)	mcm5 (ENSMMDG00005006384)	hmox1a (ENSMMDG00005006394)	foxred2 (ENSMMDG00005006400)	ankrd54 (ENSMMDG00005006413)	hmgxb4a (ENSMMDG00005006426)	si:dkeyp-69e1.8 (ENSMMDG00005006430)	foxd7 (ENSMMDG00005006431)	s1pr5a (ENSMMDG00005006433) #22	spc24 (ENSMMDG00005006434)	kri1 (ENSMMDG00005006438) #20	ldlra (ENSMMDG00005006489)	smarca4a (ENSMMDG00005010874) #7	ENSMMDG00005019256	ATG4D (ENSMMDG00005019261) #21	ENSMMDG00005019264	rtbdn (ENSMMDG00005019269)	junbb (ENSMMDG00005019271)	hook2 (ENSMMDG00005019286)	trir (ENSMMDG00005019306)	ubn2b (ENSMMDG00005019309)	TTC26 (ENSMMDG00005019320)	rpsa (ENSMMDG00005019334)	slc25a38a (ENSMMDG00005019340)
Osteoglossiformes	DUPLICATION
Osteoglossiformes	ANCESTRAL SPECIES	64	ENSGT01050000244814.a.a.a.b	ENSGT00950000182696.A.a.a.b	ENSGT00940000155083.a	ENSGT00940000157534.a.b	ENSGT00950000182961.a.b.b	ENSGT00390000013260.A.b	ENSGT00390000003753.c	ENSGT00710000107036.a.a	ENSGT00940000155774.b	ENSGT00940000156865.b	ENSGT00940000155729	ENSGT01050000244824.G	ENSGT00640000091519	ENSGT00940000157805	ENSGT00940000157140.b.b.a	ENSGT01050000244887.A.a.a.a.k #22	ENSGT00390000005584	ENSGT00390000005605 #20	ENSGT00940000154819.a.b.c.a	ENSGT00940000156887.a #7	ENSGT00950000182923.A.s	ENSGT00940000157700.b	ENSGT00950000183144.B.db.b	ENSGT00940000154277.b.b.b	ENSGT00940000161195.a.a.b	ENSGT00940000160152.n	ENSGT00390000003817.d
Asian bonytongue	MODERN SPECIES	18	ENSSFOG00015025633	GSG1 (ENSSFOG00015013225)	emp1 (ENSSFOG00015030357)	ENSSFOG00015013268	ENSSFOG00015013291	ENSSFOG00015013307	pde6ha (ENSSFOG00015032155)	ENSSFOG00015013360	ENSSFOG00015027877	ddx47 (ENSSFOG00015013392)	gcat (ENSSFOG00015013409)	ENSSFOG00015013478	mcm5 (ENSSFOG00015013517)	foxred2 (ENSSFOG00015013582)	ENSSFOG00015013623	S1PR5 (ENSSFOG00015024243) #22	spc24 (ENSSFOG00015013634)	kri1 (ENSSFOG00015013646) #20	CDKN2D (ENSSFOG00015032731) #19	ldlra (ENSSFOG00015013750)	smarca4a (ENSSFOG00015013823) #7	ENSSFOG00015013947	MAST1 (ENSSFOG00015013958)	rtbdn (ENSSFOG00015014018)	ENSSFOG00015014054	junbb (ENSSFOG00015009655)	HOOK2 (ENSSFOG00015014239)	get3 (ENSSFOG00015027208)	trir (ENSSFOG00015028164)	nfixb (ENSSFOG00015014321)	GADD45GIP1 (ENSSFOG00015024648)
P. kingsleyae	MODERN SPECIES	305	ilf3b (ENSPKIG00000007019) #16	farsa (ENSPKIG00000007170)	ENSPKIG00000007215	syce2 (ENSPKIG00000007229)	gcdhb (ENSPKIG00000007270)	SLC44A2 (ENSPKIG00000007358) #17	ENSPKIG00000007418	ENSPKIG00000007434	ENSPKIG00000007453	plppr2a (ENSPKIG00000007463)	tlcd4b (ENSPKIG00000007483)	CNN1 (ENSPKIG00000007513)	tmem205 (ENSPKIG00000007544)	ENSPKIG00000007563	foxd7 (ENSPKIG00000007581)	ENSPKIG00000007590 #22	spc24 (ENSPKIG00000007607)	kri1 (ENSPKIG00000007632) #20	CDKN2D (ENSPKIG00000007669) #19	ldlra (ENSPKIG00000007690)	smarca4a (ENSPKIG00000007770) #7	MAST1 (ENSPKIG00000008007)	ENSPKIG00000008169	junbb (ENSPKIG00000008190)	HOOK2 (ENSPKIG00000008237)	get3 (ENSPKIG00000008352)	trir (ENSPKIG00000008377)
Osteoglossiformes	ANCESTRAL SPECIES	41	ENSGT00390000013260.A.a	ENSGT00930000151058	ENSGT00390000003753.d	ENSGT00710000107036.a.b	ENSGT00940000162350.b.b	ENSGT00940000162350.b.a	ENSGT00940000156865.a	ENSGT00390000006009.b	ENSGT00390000017673.b.k	ENSGT00390000012436.g	ENSGT00940000165343	ENSGT00940000166140	ENSGT00940000157140.b.b.b	ENSGT00470000042444 #30	ENSGT00940000161143 #29	ENSGT01050000244887.A.a.a.a.l #22	ENSGT00940000159543 #23	ENSGT00940000165948	ENSGT00940000159801.B #19	ENSGT00940000159089 #18	ENSGT00940000154819.a.b.d	ENSGT00940000156887.b #7	ENSGT00530000063000.a.a.b #21	ENSGT00940000157700.a	ENSGT00950000183144.B.db.a	ENSGT00390000010768	ENSGT00940000155828	ENSGT00940000161195.a.a.a	ENSGT00940000160152.m	ENSGT00940000161361	ENSGT00390000003817.c
Asian bonytongue	MODERN SPECIES	12	ENSSFOG00015025737	ENSSFOG00015010458	ENSSFOG00015010410	ENSSFOG00015030975	ENSSFOG00015010393	ENSSFOG00015010367	TOM1 (ENSSFOG00015010332)	ENSSFOG00015010320	ENSSFOG00015010271	hmgxb4a (ENSSFOG00015010243)	ENSSFOG00015031199	ENSSFOG00015031783	foxd7 (ENSSFOG00015010194)	ENSSFOG00015010183 #30	fdx2 (ENSSFOG00015030952) #29	ENSSFOG00015010170 #22	keap1b (ENSSFOG00015010140) #23	ENSSFOG00015010119	CDKN2D (ENSSFOG00015010093) #19	ap1m2 (ENSSFOG00015010047) #18	ENSSFOG00015010040	SMARCA4 (ENSSFOG00015009921) #7	atg4da (ENSSFOG00015009908) #21	MAST1 (ENSSFOG00015009789)	rtbdn (ENSSFOG00015009745)	rnaseh2a (ENSSFOG00015009692)	ENSSFOG00015009666	JUNB (ENSSFOG00015031678)	HOOK2 (ENSSFOG00015009620)	BEST2 (ENSSFOG00015009584)	get3 (ENSSFOG00015009554)
P. kingsleyae	MODERN SPECIES	45	ENSPKIG00000010790	ENSPKIG00000010735	ENSPKIG00000010689	ENSPKIG00000010668	ENSPKIG00000010650	ENSPKIG00000010635	TOM1 (ENSPKIG00000010602)	ENSPKIG00000010580	HMOX1 (ENSPKIG00000010541)	hmgxb4a (ENSPKIG00000010496)	ENSPKIG00000010465	ENSPKIG00000010456	ENSPKIG00000010442	zglp1 (ENSPKIG00000010420) #30	fdx2 (ENSPKIG00000010398) #29	ENSPKIG00000010381 #22	keap1b (ENSPKIG00000010365) #23	ENSPKIG00000010349	CDKN2D (ENSPKIG00000010335) #19	ap1m2 (ENSPKIG00000010279) #18	ENSPKIG00000010225	SMARCA4 (ENSPKIG00000010087) #7	atg4da (ENSPKIG00000010015) #21	MAST1 (ENSPKIG00000009888)	rtbdn (ENSPKIG00000009782)	rnaseh2a (ENSPKIG00000009756)	PRDX2 (ENSPKIG00000009726)	JUNB (ENSPKIG00000009704)	HOOK2 (ENSPKIG00000009652)	BEST2 (ENSPKIG00000009609)	get3 (ENSPKIG00000009567)
Spotted gar	MODERN SPECIES	672	raver1 (ENSLOCG00000007500) #28	TYK2 (ENSLOCG00000007532) #26	cdc37 (ENSLOCG00000007552) #25	ENSLOCG00000007564	PDE4A (ENSLOCG00000007575) #24	kank2 (ENSLOCG00000007602)	DOCK6 (ENSLOCG00000007613)	ENSLOCG00000007635	elavl3 (ENSLOCG00000007647)	prkcsh (ENSLOCG00000007655)	ENSLOCG00000007669	ecsit (ENSLOCG00000007679)	foxd7 (ENSLOCG00000018295)	ENSLOCG00000007686 #30	fdx2 (ENSLOCG00000007698) #29	s1pr5b (ENSLOCG00000018296) #22	keap1b (ENSLOCG00000007721) #23	spc24 (ENSLOCG00000007731)	ENSLOCG00000007742	kri1 (ENSLOCG00000007754) #20	CDKN2D (ENSLOCG00000007768) #19	ap1m2 (ENSLOCG00000007782) #18	LDLR (ENSLOCG00000007795)	smarca4a (ENSLOCG00000007820) #7	atg4da (ENSLOCG00000007842) #21	MAST1 (ENSLOCG00000007853)	rtbdn (ENSLOCG00000007879)	rnaseh2a (ENSLOCG00000007890)	prdx2 (ENSLOCG00000007904)	junbb (ENSLOCG00000018297)	hook2 (ENSLOCG00000007916)
Reedfish	MODERN SPECIES	8	trir (ENSECRG00000016949)	rnf11a (ENSECRG00000016960)	rad23aa (ENSECRG00000016975)	ENSECRG00000017009	ENSECRG00000017071	ENSECRG00000017081	kank2 (ENSECRG00000017107)	DOCK6 (ENSECRG00000017288)	elavl3 (ENSECRG00000018117)	prkcsh (ENSECRG00000018911)	ENSECRG00000018941	foxd7 (ENSECRG00000018952)	ecsit (ENSECRG00000018979)	ENSECRG00000018996 #30	fdx2 (ENSECRG00000019024) #29	s1pr5b (ENSECRG00000019068) #22	keap1b (ENSECRG00000019072) #23	ENSECRG00000019100	PDE4A (ENSECRG00000019124) #24	snrpa1 (ENSECRG00000019177)	selenos (ENSECRG00000019200)	chsy1 (ENSECRG00000019218)	ENSECRG00000019236	aldh1a3 (ENSECRG00000019329)	asb7 (ENSECRG00000019395)	ENSECRG00000019431	cers3b (ENSECRG00000019454)	ADAMTS17 (ENSECRG00000019513)	ENSECRG00000019633	MINAR1 (ENSECRG00000019647)	ENSECRG00000019665
Elephant shark	MODERN SPECIES	1665	TRIP10 (ENSCMIG00000005715)	TNPO2 (ENSCMIG00000005025)	FBXW9 (ENSCMIG00000004871)	ENSCMIG00000004870	wdr83 (ENSCMIG00000004863)	wdr83os (ENSCMIG00000004852)	ALKBH7 (ENSCMIG00000004848)	PSPN (ENSCMIG00000004844)	GTF2F1 (ENSCMIG00000004835)	YJU2B (ENSCMIG00000004795)	s1pr2 (ENSCMIG00000004780) #35	ENSCMIG00000004774	ENSCMIG00000004772	ENSCMIG00000004765	ENSCMIG00000004758	s1pr5a (ENSCMIG00000004754) #22	ENSCMIG00000004753	ENSCMIG00000004749	DOCK6 (ENSCMIG00000003754)	ENSCMIG00000003400	ENSCMIG00000003397	LDLR (ENSCMIG00000003383)	smarca4a (ENSCMIG00000001355) #7	carm1 (ENSCMIG00000000561) #11	rfx1a (ENSCMIG00000000422)	ENSCMIG00000000386	ENSCMIG00000000372	ENSCMIG00000000335	ENSCMIG00000000325	ENSCMIG00000000320	CC2D1A (ENSCMIG00000000295)