Mus_A	ANCESTRAL SPECIES	5	ENSGT00390000011724 #7	ENSGT00530000064210 #8	ENSGT01030000234620.a.b.b.b #9	ENSGT00390000017528 #10	ENSGT00940000162504 #11	ENSGT00940000156376 #12	ENSGT00940000162770 #13	ENSGT00940000161120 #14	ENSGT00390000001374 #15	ENSGT00720000108846.a #16	ENSGT00390000018676 #17	ENSGT01030000234625.B.c #18	ENSGT00390000012703.a #19	ENSGT00940000157391 #20	ENSGT00940000155656 #21	ENSGT00940000154790.a.a.b #22	ENSGT00940000157082 #23	ENSGT00940000156874 #24	ENSGT00730000111187.b #25	ENSGT00940000156560 #26	ENSGT00940000153881.a #27	ENSGT00940000158456 #28	ENSGT00940000153433.B.a.b #29	ENSGT00410000025698.a #30	ENSGT00390000011270 #31	ENSGT00390000001960 #33	ENSGT00940000157390 #34	ENSGT00940000159171 #35	ENSGT00940000159967 #36	ENSGT00900000143215	ENSGT00550000074815 #37
Mus_B	ANCESTRAL SPECIES	7	ENSGT00390000011724 #7	ENSGT00530000064210 #8	ENSGT01030000234620.a.b.b.b #9	ENSGT00390000017528 #10	ENSGT00940000162504 #11	ENSGT00940000156376 #12	ENSGT00940000162770 #13	ENSGT00940000161120 #14	ENSGT00390000001374 #15	ENSGT00720000108846.a #16	ENSGT00390000018676 #17	ENSGT01030000234625.B.c #18	ENSGT00390000012703.a #19	ENSGT00940000157391 #20	ENSGT00940000155656 #21	ENSGT00940000154790.a.a.b #22	ENSGT00940000157082 #23	ENSGT00940000156874 #24	ENSGT00730000111187.b #25	ENSGT00940000156560 #26	ENSGT00940000153881.a #27	ENSGT00940000158456 #28	ENSGT00940000153433.B.a.b #29	ENSGT00410000025698.a #30	ENSGT00390000011270 #31	ENSGT00390000001960 #33	ENSGT00940000157390 #34	ENSGT00940000159171 #35	ENSGT00940000159967 #36	ENSGT00900000143215	ENSGT00550000074815 #37
Mouse	MODERN SPECIES		Ints7 (ENSMUSG00000037461) #7	Dtl (ENSMUSG00000037474) #8	Ppp2r5a (ENSMUSG00000026626) #9	Pacc1 (ENSMUSG00000026627) #10	Nenf (ENSMUSG00000037499) #11	Atf3 (ENSMUSG00000026628) #12	Garin4 (ENSMUSG00000091017) #13	Batf3 (ENSMUSG00000026630) #14	Nsl1 (ENSMUSG00000062510) #15	Tatdn3 (ENSMUSG00000026632) #16	Spata45 (ENSMUSG00000057072) #17	Flvcr1 (ENSMUSG00000066595) #18	Vash2 (ENSMUSG00000037568) #19	Angel2 (ENSMUSG00000026634) #20	Rps6kc1 (ENSMUSG00000089872) #21	Prox1 (ENSMUSG00000010175) #22	Smyd2 (ENSMUSG00000026603) #23	Ptpn14 (ENSMUSG00000026604) #24	Cenpf (ENSMUSG00000026605) #25	Kcnk2 (ENSMUSG00000037624) #26	Kctd3 (ENSMUSG00000026608) #27	Ush2a (ENSMUSG00000026609) #28	Esrrg (ENSMUSG00000026610) #29	Gpatch2 (ENSMUSG00000039210) #30	Spata17 (ENSMUSG00000026611) #31	D1Pas1 (ENSMUSG00000039224) #32	Rrp15 (ENSMUSG00000001305) #33	Tgfb2 (ENSMUSG00000039239) #34	Lyplal1 (ENSMUSG00000039246) #35	Slc30a10 (ENSMUSG00000026614) #36	Eprs (ENSMUSG00000026615) #37
Mus_C	ANCESTRAL SPECIES	1	ENSGT00390000011724 #7	ENSGT00530000064210 #8	ENSGT01030000234620.a.b.b.b #9	ENSGT00390000017528 #10	ENSGT00940000162504 #11	ENSGT00940000156376 #12	ENSGT00940000162770 #13	ENSGT00940000161120 #14	ENSGT00390000001374 #15	ENSGT00720000108846.a #16	ENSGT00390000018676 #17	ENSGT01030000234625.B.c #18	ENSGT00390000012703.a #19	ENSGT00940000157391 #20	ENSGT00940000155656 #21	ENSGT00940000154790.a.a.b #22	ENSGT00940000157082 #23	ENSGT00940000156874 #24	ENSGT00730000111187.b #25	ENSGT00940000156560 #26	ENSGT00940000153881.a #27	ENSGT00940000158456 #28	ENSGT00940000153433.B.a.b #29	ENSGT00410000025698.a #30	ENSGT00390000011270 #31	ENSGT00940000154443.b.a #32	ENSGT00390000001960 #33	ENSGT00940000157390 #34	ENSGT00940000159171 #35	ENSGT00940000159967 #36	ENSGT00900000143215
spretus	MODERN SPECIES		Ints7 (MGP_SPRETEiJ_G0015853) #7	Dtl (MGP_SPRETEiJ_G0015852) #8	Ppp2r5a (MGP_SPRETEiJ_G0015851) #9	Pacc1 (MGP_SPRETEiJ_G0015850) #10	Nenf (MGP_SPRETEiJ_G0015849) #11	Atf3 (MGP_SPRETEiJ_G0015848) #12	Garin4 (MGP_SPRETEiJ_G0015847) #13	Batf3 (MGP_SPRETEiJ_G0015846) #14	Nsl1 (MGP_SPRETEiJ_G0015845) #15	Tatdn3 (MGP_SPRETEiJ_G0015844) #16	Spata45 (MGP_SPRETEiJ_G0015843) #17	Flvcr1 (MGP_SPRETEiJ_G0015842) #18	Vash2 (MGP_SPRETEiJ_G0015841) #19	Angel2 (MGP_SPRETEiJ_G0015840) #20	Rps6kc1 (MGP_SPRETEiJ_G0015839) #21	Prox1 (MGP_SPRETEiJ_G0015838) #22	Ighv2-7 (MGP_SPRETEiJ_G0000034)	Smyd2 (MGP_SPRETEiJ_G0015837) #23	Ptpn14 (MGP_SPRETEiJ_G0015836) #24	Cenpf (MGP_SPRETEiJ_G0015835) #25	Kcnk2 (MGP_SPRETEiJ_G0015834) #26	Kctd3 (MGP_SPRETEiJ_G0015833) #27	MGP_SPRETEiJ_G0015832	Esrrg (MGP_SPRETEiJ_G0015831) #29	Gpatch2 (MGP_SPRETEiJ_G0015830) #30	Spata17 (MGP_SPRETEiJ_G0015829) #31	D1Pas1 (MGP_SPRETEiJ_G0015828) #32	Rrp15 (MGP_SPRETEiJ_G0015827) #33	Tgfb2 (MGP_SPRETEiJ_G0015826) #34	Lyplal1 (MGP_SPRETEiJ_G0015825) #35	Slc30a10 (MGP_SPRETEiJ_G0015824) #36
Steppe mouse	MODERN SPECIES	3418	Dtl (ENSMSIG00000029283) #8	Ppp2r5a (ENSMSIG00000029289) #9	Pacc1 (ENSMSIG00000029302) #10	Nenf (ENSMSIG00000029311) #11	ENSMSIG00000029314	ENSMSIG00000029315	Atf3 (ENSMSIG00000029326) #12	Garin4 (ENSMSIG00000029331) #13	ENSMSIG00000029332 #15	ENSMSIG00000029353 #16	Spata45 (ENSMSIG00000029382) #17	Flvcr1 (ENSMSIG00000029386) #18	Vash2 (ENSMSIG00000029392) #19	Angel2 (ENSMSIG00000029399) #20	Rps6kc1 (ENSMSIG00000029410) #21	Prox1 (ENSMSIG00000029428) #22	Smyd2 (ENSMSIG00000029433) #23	Ptpn14 (ENSMSIG00000029436) #24	Cenpf (ENSMSIG00000029453) #25	Kcnk2 (ENSMSIG00000029469) #26	Kctd3 (ENSMSIG00000029533) #27	Ush2a (ENSMSIG00000029542) #28	Esrrg (ENSMSIG00000029593) #29	ENSMSIG00000029619	Gpatch2 (ENSMSIG00000029622) #30	Spata17 (ENSMSIG00000029638) #31
Ryukyu mouse	MODERN SPECIES		Ints7 (MGP_CAROLIEiJ_G0015053) #7	Dtl (MGP_CAROLIEiJ_G0015052) #8	Ppp2r5a (MGP_CAROLIEiJ_G0015051) #9	Pacc1 (MGP_CAROLIEiJ_G0015050) #10	Nenf (MGP_CAROLIEiJ_G0015049) #11	Atf3 (MGP_CAROLIEiJ_G0015048) #12	Garin4 (MGP_CAROLIEiJ_G0015047) #13	Batf3 (MGP_CAROLIEiJ_G0015046) #14	Nsl1 (MGP_CAROLIEiJ_G0015045) #15	Tatdn3 (MGP_CAROLIEiJ_G0015044) #16	Spata45 (MGP_CAROLIEiJ_G0015043) #17	Flvcr1 (MGP_CAROLIEiJ_G0015042) #18	Vash2 (MGP_CAROLIEiJ_G0015041) #19	Angel2 (MGP_CAROLIEiJ_G0015040) #20	Rps6kc1 (MGP_CAROLIEiJ_G0015039) #21	Prox1 (MGP_CAROLIEiJ_G0015038) #22	Smyd2 (MGP_CAROLIEiJ_G0015037) #23	Ptpn14 (MGP_CAROLIEiJ_G0015036) #24	Cenpf (MGP_CAROLIEiJ_G0015035) #25	Kcnk2 (MGP_CAROLIEiJ_G0015034) #26	Kctd3 (MGP_CAROLIEiJ_G0015033) #27	MGP_CAROLIEiJ_G0015032	Esrrg (MGP_CAROLIEiJ_G0015031) #29	Gpatch2 (MGP_CAROLIEiJ_G0015030) #30	Spata17 (MGP_CAROLIEiJ_G0015029) #31	D1Pas1 (MGP_CAROLIEiJ_G0015028) #32	Rrp15 (MGP_CAROLIEiJ_G0015027) #33	Tgfb2 (MGP_CAROLIEiJ_G0015026) #34	Lyplal1 (MGP_CAROLIEiJ_G0015025) #35	Slc30a10 (MGP_CAROLIEiJ_G0015024) #36	Eprs (MGP_CAROLIEiJ_G0015023) #37