Mus_A	ANCESTRAL SPECIES	7	ENSGT00950000182839.B.a.a #7	ENSGT00950000182825.B #8	ENSGT00910000144343 #9	ENSGT00940000155871 #10	ENSGT00390000001810 #11	ENSGT00390000004708 #12	ENSGT00530000063722.a #13	ENSGT00390000009532.A.d.a #14	ENSGT00940000156122 #15	ENSGT00950000182939.b.a.b #16	ENSGT00390000000212 #17	ENSGT01030000234535.D #18	ENSGT00940000163137 #19	ENSGT00390000004237 #20	ENSGT00940000156680.b.b #21	ENSGT00990000203615.a.a.b #22	ENSGT00940000153525.h #23	ENSGT00390000018612.a.b #24	ENSGT00390000012501 #25	ENSGT00390000014507.a #26	ENSGT00940000157013 #27	ENSGT00390000014894 #28	ENSGT00510000048671 #29	ENSGT01080000257336.b.e.b.a.b.b.e.b.a #30	ENSGT01080000257336.b.e.b.a.b.b.e.a.b ##30	ENSGT01080000257336.b.e.b.a.b.b.e.a.a ##30	ENSGT01080000257336.b.e.b.a.b.b.e.b.b ##30	ENSGT01080000257336.b.e.b.a.b.b.f ##30	ENSGT01080000257336.b.e.b.a.b.a ##30	ENSGT01080000257336.b.e.b.a.a #31	ENSGT00940000156628 #32
Ryukyu mouse	MODERN SPECIES	15	Rassf8 (MGP_CAROLIEiJ_G0029050) #7	MGP_CAROLIEiJ_G0029049 #8	Lmntd1 (MGP_CAROLIEiJ_G0029048) #9	Kras (MGP_CAROLIEiJ_G0029047) #10	Etfrf1 (MGP_CAROLIEiJ_G0029046) #11	Casc1 (MGP_CAROLIEiJ_G0029045) #12	Irag2 (MGP_CAROLIEiJ_G0029044) #13	Bcat1 (MGP_CAROLIEiJ_G0029043) #14	Sox5 (MGP_CAROLIEiJ_G0029042) #15	Etnk1 (MGP_CAROLIEiJ_G0029041) #16	C2cd5 (MGP_CAROLIEiJ_G0029040) #17	St8sia1 (MGP_CAROLIEiJ_G0029039) #18	Sult6b2 (MGP_CAROLIEiJ_G0029038) #19	Cmas (MGP_CAROLIEiJ_G0029037) #20	Abcc9 (MGP_CAROLIEiJ_G0029036) #21	Kcnj8 (MGP_CAROLIEiJ_G0029035) #22	Ldhb (MGP_CAROLIEiJ_G0029034) #23	Gys2 (MGP_CAROLIEiJ_G0029033) #24	Spx (MGP_CAROLIEiJ_G0029032) #25	Golt1b (MGP_CAROLIEiJ_G0029031) #26	Recql (MGP_CAROLIEiJ_G0029030) #27	Pyroxd1 (MGP_CAROLIEiJ_G0029029) #28	Iapp (MGP_CAROLIEiJ_G0029028) #29	Slco1a5 (MGP_CAROLIEiJ_G0029027) #30	Slco1c1 (MGP_CAROLIEiJ_G0029026) #31	Pde3a (MGP_CAROLIEiJ_G0029025) #32	MGP_CAROLIEiJ_G0029024 #33	Aebp2 (MGP_CAROLIEiJ_G0029023) #34	Plekha5 (MGP_CAROLIEiJ_G0029022) #35	MGP_CAROLIEiJ_G0029021 #36	Capza3 (MGP_CAROLIEiJ_G0029020) #37
Mus_B	ANCESTRAL SPECIES	15	ENSGT00940000161014	ENSGT00950000182839.B.a.a #7	ENSGT00910000144343 #9	ENSGT00940000155871 #10	ENSGT00390000001810 #11	ENSGT00390000004708 #12	ENSGT00530000063722.a #13	ENSGT00390000009532.A.d.a #14	ENSGT00940000156122 #15	ENSGT00950000182939.b.a.b #16	ENSGT00390000000212 #17	ENSGT01030000234535.D #18	ENSGT00940000163137 #19	ENSGT00390000004237 #20	ENSGT00940000156680.b.b #21	ENSGT00990000203615.a.a.b #22	ENSGT00940000153525.h #23	ENSGT00390000018612.a.b #24	ENSGT00390000012501 #25	ENSGT00390000014507.a #26	ENSGT00940000157013 #27	ENSGT00390000014894 #28	ENSGT00510000048671 #29	ENSGT01080000257336.b.e.b.a.b.b.e.b.a #30	ENSGT01080000257336.b.e.b.a.b.b.e.a.b ##30	ENSGT01080000257336.b.e.b.a.b.b.e.a.a ##30	ENSGT01080000257336.b.e.b.a.b.b.e.b.b ##30	ENSGT01080000257336.b.e.b.a.b.b.f.a ##30	ENSGT01080000257336.b.e.b.a.b.b.f.b ##30	ENSGT01080000257336.b.e.b.a.b.a ##30	ENSGT01080000257336.b.e.b.a.a #31
Mus_C	ANCESTRAL SPECIES	29	ENSGT00940000161014	ENSGT00950000182839.B.a.a #7	ENSGT00910000144343 #9	ENSGT00940000155871 #10	ENSGT00390000001810 #11	ENSGT00390000004708 #12	ENSGT00530000063722.a #13	ENSGT00390000009532.A.d.a #14	ENSGT00940000156122 #15	ENSGT00950000182939.b.a.b #16	ENSGT00390000000212 #17	ENSGT01030000234535.D #18	ENSGT00940000163137 #19	ENSGT00390000004237 #20	ENSGT00940000156680.b.b #21	ENSGT00990000203615.a.a.b #22	ENSGT00940000153525.h #23	ENSGT00390000018612.a.b #24	ENSGT00390000012501 #25	ENSGT00390000014507.a #26	ENSGT00940000157013 #27	ENSGT00390000014894 #28	ENSGT00510000048671 #29	ENSGT01080000257336.b.e.b.a.b.b.e.b.a #30	ENSGT01080000257336.b.e.b.a.b.b.e.a.b ##30	ENSGT01080000257336.b.e.b.a.b.b.e.a.a ##30	ENSGT01080000257336.b.e.b.a.b.b.e.b.b ##30	ENSGT01080000257336.b.e.b.a.b.b.f.a ##30	ENSGT01080000257336.b.e.b.a.b.b.f.b ##30	ENSGT01080000257336.b.e.b.a.b.a ##30	ENSGT01080000257336.b.e.b.a.a #31
Steppe mouse	MODERN SPECIES	3152									Etnk1 (ENSMSIG00000021958) #16	C2cd5 (ENSMSIG00000020817) #17	ENSMSIG00000020782	St8sia1 (ENSMSIG00000020772) #18	Sult6b2 (ENSMSIG00000020758) #19	Cmas (ENSMSIG00000020738) #20	Abcc9 (ENSMSIG00000019881) #21	Kcnj8 (ENSMSIG00000019868) #22	Ldhb (ENSMSIG00000019827) #23	Gys2 (ENSMSIG00000019806) #24	ENSMSIG00000019767 #25	Golt1b (ENSMSIG00000019749) #26	Recql (ENSMSIG00000019632) #27	Pyroxd1 (ENSMSIG00000019613) #28	Iapp (ENSMSIG00000019607) #29	Slco1a5 (ENSMSIG00000019548) #30	Slco1a6 (ENSMSIG00000019523) ##30	Gm6614 (ENSMSIG00000019429) ##30	Slco1a1 (ENSMSIG00000019360) ##30	Slco1a4 (ENSMSIG00000019338) ##30	Gm5724 (ENSMSIG00000019292) ##30	Slco1b2 (ENSMSIG00000019224) ##30	Slco1c1 (ENSMSIG00000019141) #31
spretus	MODERN SPECIES	15	Rassf8 (MGP_SPRETEiJ_G0030105) #7	MGP_SPRETEiJ_G0030104 #8	Lmntd1 (MGP_SPRETEiJ_G0030103) #9	Kras (MGP_SPRETEiJ_G0030102) #10	Etfrf1 (MGP_SPRETEiJ_G0030101) #11	Casc1 (MGP_SPRETEiJ_G0030100) #12	Irag2 (MGP_SPRETEiJ_G0030099) #13	Bcat1 (MGP_SPRETEiJ_G0030098) #14	Sox5 (MGP_SPRETEiJ_G0030097) #15	Etnk1 (MGP_SPRETEiJ_G0030096) #16	C2cd5 (MGP_SPRETEiJ_G0030095) #17	St8sia1 (MGP_SPRETEiJ_G0030094) #18	Sult6b2 (MGP_SPRETEiJ_G0030093) #19	Cmas (MGP_SPRETEiJ_G0030092) #20	Abcc9 (MGP_SPRETEiJ_G0030091) #21	Kcnj8 (MGP_SPRETEiJ_G0030090) #22	Ldhb (MGP_SPRETEiJ_G0030089) #23	Gys2 (MGP_SPRETEiJ_G0030088) #24	Spx (MGP_SPRETEiJ_G0030087) #25	Golt1b (MGP_SPRETEiJ_G0030086) #26	Recql (MGP_SPRETEiJ_G0030085) #27	Pyroxd1 (MGP_SPRETEiJ_G0030084) #28	Iapp (MGP_SPRETEiJ_G0030083) #29	MGP_SPRETEiJ_G0030082 #30	MGP_SPRETEiJ_G0030081	MGP_SPRETEiJ_G0030080 ##30	Slco1a1 (MGP_SPRETEiJ_G0030079) ##30	Slco1a4 (MGP_SPRETEiJ_G0030078) ##30	Gm5724 (MGP_SPRETEiJ_G0030077) ##30	Slco1b2 (MGP_SPRETEiJ_G0030076) ##30	Slco1c1 (MGP_SPRETEiJ_G0030075) #31
Mouse	MODERN SPECIES	15	Rassf8 (ENSMUSG00000030259) #7	Tuba3b (ENSMUSG00000067338) #8	Lmntd1 (ENSMUSG00000054966) #9	Kras (ENSMUSG00000030265) #10	Etfrf1 (ENSMUSG00000040370) #11	Casc1 (ENSMUSG00000043541) #12	Irag2 (ENSMUSG00000030263) #13	Bcat1 (ENSMUSG00000030268) #14	Sox5 (ENSMUSG00000041540) #15	Etnk1 (ENSMUSG00000030275) #16	C2cd5 (ENSMUSG00000030279) #17	St8sia1 (ENSMUSG00000030283) #18	Sult6b2 (ENSMUSG00000048473) #19	Cmas (ENSMUSG00000030282) #20	Abcc9 (ENSMUSG00000030249) #21	Kcnj8 (ENSMUSG00000030247) #22	Ldhb (ENSMUSG00000030246) #23	Gys2 (ENSMUSG00000030244) #24	Spx (ENSMUSG00000071112) #25	Golt1b (ENSMUSG00000030245) #26	Recql (ENSMUSG00000030243) #27	Pyroxd1 (ENSMUSG00000041671) #28	Iapp (ENSMUSG00000041681) #29	Slco1a5 (ENSMUSG00000063975) #30	Slco1a6 (ENSMUSG00000079262) ##30	Gm6614 (ENSMUSG00000079263) ##30	Slco1a1 (ENSMUSG00000041698) ##30	Slco1a4 (ENSMUSG00000030237) ##30	Gm5724 (ENSMUSG00000084927) ##30	Slco1b2 (ENSMUSG00000030236) ##30	Slco1c1 (ENSMUSG00000030235) #31