Bovidae	ANCESTRAL SPECIES	8	ENSGT00940000157541	ENSGT00530000063686.a.b	ENSGT00530000063686.a.a	ENSGT00940000157201 #7	ENSGT00390000012204 #8	ENSGT00940000154533.b.d #9	ENSGT00940000154714 #10	ENSGT00950000182837.b.b #11	ENSGT00940000157055 #13	ENSGT00940000155515.a.b.b.l #15	ENSGT00930000150980.a #16	ENSGT00390000009987 #17	ENSGT00390000010523.c.b #18	ENSGT00940000160209.e ##20	ENSGT00940000158904 #19	ENSGT01080000257365.b.a.a.b.a #22	ENSGT00950000183038.a.b.b.b #24	ENSGT00390000001718 #25	ENSGT00940000159241 #26	ENSGT01090000260082.d.a.a.a.b #27	ENSGT00530000063734.a #28	ENSGT00940000158842 #29	ENSGT00940000160160 #30	ENSGT00940000161094 #31	ENSGT00940000153988.A #32	ENSGT00940000155773.b #33	ENSGT00940000154574.d #35	ENSGT00940000155655.B #36	ENSGT00940000157230 #37	ENSGT00940000155359	ENSGT00950000182878.b.b.k.a.a
Caprinae	ANCESTRAL SPECIES	5	ENSGT00940000157541.c	ENSGT00530000063686.a.b	ENSGT00530000063686.a.a	ENSGT00940000157201 #7	ENSGT00390000012204 #8	ENSGT00940000154533.b.d #9	ENSGT00940000154714 #10	ENSGT00950000182837.b.b #11	ENSGT00940000157055 #13	ENSGT00940000155515.a.b.b.l #15	ENSGT00930000150980.a #16	ENSGT00390000009987 #17	ENSGT00390000010523.c.b #18	ENSGT00940000158904 #19	ENSGT00940000171318 #21	ENSGT01080000257365.b.a.a.b.a #22	ENSGT00950000183038.a.b.b.b #24	ENSGT00390000001718 #25	ENSGT00940000159241 #26	ENSGT01090000260082.d.a.a.a.b #27	ENSGT00530000063734.a #28	ENSGT00940000158842 #29	ENSGT00940000160160 #30	ENSGT00940000161094 #31	ENSGT00940000153988.A #32	ENSGT00940000155773.b #33	ENSGT00940000154574.d #35	ENSGT00940000155655.B #36	ENSGT00940000157230 #37	ENSGT00940000155359	ENSGT00950000182878.b.b.k.a.a
Goat	MODERN SPECIES	11	TNFAIP6 (ENSCHIG00000013151) #7	RIF1 (ENSCHIG00000020327) #8	NEB (ENSCHIG00000014281) #9	ARL5A (ENSCHIG00000025329) #10	CACNB4 (ENSCHIG00000013367) #11	ENSCHIG00000022060 #12	STAM2 (ENSCHIG00000020598) #13	ENSCHIG00000010047 #14	FMNL2 (ENSCHIG00000026934) #15	PRPF40A (ENSCHIG00000011660) #16	ARL6IP6 (ENSCHIG00000013866) #17	RPRM (ENSCHIG00000005339) #18	GALNT13 (ENSCHIG00000022466) #19	ENSCHIG00000024495 #20	ENSCHIG00000017562 #21	KCNJ3 (ENSCHIG00000018841) #22	ENSCHIG00000009224 #23	NR4A2 (ENSCHIG00000012843) #24	GPD2 (ENSCHIG00000018054) #25	GALNT5 (ENSCHIG00000001864) #26	ERMN (ENSCHIG00000016766) #27	CYTIP (ENSCHIG00000018333) #28	ACVR1C (ENSCHIG00000013118) #29	ACVR1 (ENSCHIG00000022652) #30	UPP2 (ENSCHIG00000017869) #31	CCDC148 (ENSCHIG00000022642) #32	PKP4 (ENSCHIG00000018303) #33	ENSCHIG00000002234 #34	DAPL1 (ENSCHIG00000023463) #35	TANC1 (ENSCHIG00000026445) #36	WDSUB1 (ENSCHIG00000009513) #37
Rambouillet Sheep	MODERN SPECIES	11	ENSOARG00020024716	RBM43 (ENSOARG00020024693)	NMI (ENSOARG00020024663)	TNFAIP6 (ENSOARG00020024645) #7	RIF1 (ENSOARG00020024396) #8	NEB (ENSOARG00020024247) #9	ARL5A (ENSOARG00020024180) #10	CACNB4 (ENSOARG00020023560) #11	STAM2 (ENSOARG00020023418) #13	ENSOARG00020023393	FMNL2 (ENSOARG00020023016) #15	PRPF40A (ENSOARG00020022598) #16	ARL6IP6 (ENSOARG00020022563) #17	GALNT13 (ENSOARG00020022232) #19	ENSOARG00020022186 #21	KCNJ3 (ENSOARG00020022128) #22	NR4A2 (ENSOARG00020022011) #24	GPD2 (ENSOARG00020021873) #25	ERMN (ENSOARG00020021747) #27	CYTIP (ENSOARG00020021649) #28	ACVR1C (ENSOARG00020021468) #29	ACVR1 (ENSOARG00020021241) #30	UPP2 (ENSOARG00020021088) #31	CCDC148 (ENSOARG00020020890) #32	PKP4 (ENSOARG00020020474) #33	DAPL1 (ENSOARG00020020413) #35	TANC1 (ENSOARG00020019416) #36	WDSUB1 (ENSOARG00020019026) #37	BAZ2B (ENSOARG00020018501)	MARCH7 (ENSOARG00020018026)	CD302 (ENSOARG00020017815)
Bovinae	ANCESTRAL SPECIES	5	ENSGT00530000063686.a.b	ENSGT00530000063686.a.a	ENSGT00940000157201 #7	ENSGT00390000012204 #8	ENSGT00940000154533.b.d #9	ENSGT00940000154714 #10	ENSGT00950000182837.b.b #11	ENSGT00940000157055 #13	ENSGT00390000018085.a.b.b	ENSGT00940000155515.a.b.b.l #15	ENSGT00930000150980.a #16	ENSGT00390000009987 #17	ENSGT00390000010523.c.b #18	ENSGT00940000160209.e ##20	ENSGT00940000158904 #19	ENSGT01080000257365.b.a.a.b.a #22	ENSGT00950000183038.a.b.b.b #24	ENSGT00390000001718 #25	ENSGT00940000159241 #26	ENSGT01090000260082.d.a.a.a.b #27	ENSGT00530000063734.a #28	ENSGT00940000158842 #29	ENSGT00940000160160 #30	ENSGT00940000161094 #31	ENSGT00940000153988.A #32	ENSGT00940000155773.b #33	ENSGT00940000154574.d #35	ENSGT00940000155655.B #36	ENSGT00940000157230 #37	ENSGT00940000155359	ENSGT00950000182878.b.b.k.a.a
American bison	MODERN SPECIES	3062	NEB (ENSBBBG00000003376) #9	ENSBBBG00000014203	ARL5A (ENSBBBG00000014197) #10	CACNB4 (ENSBBBG00000014165) #11	STAM2 (ENSBBBG00000013190) #13	ENSBBBG00000007404	ENSBBBG00000002660 #15	PRPF40A (ENSBBBG00000013168) #16	ARL6IP6 (ENSBBBG00000013147) #17	ENSBBBG00000013139	ENSBBBG00000002646	RPRM (ENSBBBG00000013133) #18	GALNT13 (ENSBBBG00000013119) #19	ENSBBBG00000013097 ##20	ENSBBBG00000002628 #21	ENSBBBG00000001689 #22	NR4A2 (ENSBBBG00000002625) #24	GPD2 (ENSBBBG00000013051) #25	GALNT5 (ENSBBBG00000012983) #26	ERMN (ENSBBBG00000012974) #27	CYTIP (ENSBBBG00000012958) #28	ACVR1C (ENSBBBG00000001698) #29
Bos	ANCESTRAL SPECIES	6	ENSGT00530000063686.a.a	ENSGT00940000157201 #7	ENSGT00390000012204 #8	ENSGT00940000154533.b.d #9	ENSGT00940000154714 #10	ENSGT00950000182837.b.b #11	ENSGT00940000157055 #13	ENSGT00390000018085.a.b.b	ENSGT00940000155515.a.b.b.l #15	ENSGT00930000150980.a #16	ENSGT00390000009987 #17	ENSGT00390000007818.e.b.b	ENSGT00390000010523.c.b #18	ENSGT00940000160209.e ##20	ENSGT00940000158904 #19	ENSGT01080000257365.b.a.a.b.a #22	ENSGT00950000183038.a.b.b.b #24	ENSGT00390000001718 #25	ENSGT00940000155602.i.a	ENSGT00940000159241 #26	ENSGT01090000260082.d.a.a.a.b #27	ENSGT00530000063734.a #28	ENSGT00940000158842 #29	ENSGT00940000160160 #30	ENSGT00940000161094 #31	ENSGT00940000153988.A #32	ENSGT00940000155773.b.f #33	ENSGT00940000154574.d #35	ENSGT00940000155655.B #36	ENSGT00940000157230 #37	ENSGT00940000155359
Bos_b	ANCESTRAL SPECIES	3	ENSGT00530000063686.a.b	ENSGT00530000063686.a.a	ENSGT00940000157201 #7	ENSGT00390000012204 #8	ENSGT00940000154533.b.d #9	ENSGT00940000154714 #10	ENSGT00950000182837.b.b #11	ENSGT00940000157055 #13	ENSGT00940000155515.a.b.b.l #15	ENSGT00930000150980.a #16	ENSGT00390000009987 #17	ENSGT00390000007818.e.b.b	ENSGT00390000010523.c.b #18	ENSGT00940000160209.e ##20	ENSGT00940000158904 #19	ENSGT01080000257365.b.a.a.b.a #22	ENSGT00950000183038.a.b.b.b #24	ENSGT00390000001718 #25	ENSGT00940000155602.i.a	ENSGT00940000159241 #26	ENSGT01090000260082.d.a.a.a.b #27	ENSGT00530000063734.a #28	ENSGT00940000158842 #29	ENSGT00940000160160 #30	ENSGT00940000161094 #31	ENSGT00940000153988.A #32	ENSGT00940000155773.b.f #33	ENSGT00940000154574.d #35	ENSGT00940000155655.B #36	ENSGT00940000157230 #37	ENSGT00940000155359
Cow	MODERN SPECIES	11	NMI (ENSBTAG00000032369)	TNFAIP6 (ENSBTAG00000007239) #7	RIF1 (ENSBTAG00000021020) #8	NEB (ENSBTAG00000006907) #9	ARL5A (ENSBTAG00000002293) #10	CACNB4 (ENSBTAG00000002297) #11	STAM2 (ENSBTAG00000001887) #13	FMNL2 (ENSBTAG00000026851) #15	PRPF40A (ENSBTAG00000048151) #16	ENSBTAG00000047365	ARL6IP6 (ENSBTAG00000001435) #17	ENSBTAG00000033143	RPRM (ENSBTAG00000021526) #18	ENSBTAG00000054139 ##20	GALNT13 (ENSBTAG00000005562) #19	KCNJ3 (ENSBTAG00000006159) #22	NR4A2 (ENSBTAG00000003650) #24	GPD2 (ENSBTAG00000009770) #25	ENSBTAG00000054211	GALNT5 (ENSBTAG00000017376) #26	ERMN (ENSBTAG00000012912) #27	CYTIP (ENSBTAG00000008329) #28	ACVR1C (ENSBTAG00000019337) #29	ACVR1 (ENSBTAG00000011909) #30	UPP2 (ENSBTAG00000012801) #31	CCDC148 (ENSBTAG00000004267) #32	ENSBTAG00000049997	PKP4 (ENSBTAG00000013773) #33	DAPL1 (ENSBTAG00000032481) #35	TANC1 (ENSBTAG00000004177) #36	WDSUB1 (ENSBTAG00000004184) #37
Hybrid Bos Indicus	MODERN SPECIES	11	NMI (ENSBIXG00005017903)	TNFAIP6 (ENSBIXG00005017934) #7	RIF1 (ENSBIXG00005018091) #8	NEB (ENSBIXG00005018305) #9	ARL5A (ENSBIXG00005002986) #10	CACNB4 (ENSBIXG00005003080) #11	STAM2 (ENSBIXG00005019037) #13	FMNL2 (ENSBIXG00005019262) #15	PRPF40A (ENSBIXG00005005862) #16	ARL6IP6 (ENSBIXG00005003165) #17	ENSBIXG00005019449	RPRM (ENSBIXG00005019467) #18	GALNT13 (ENSBIXG00005019576) #19	ENSBIXG00005019614	ENSBIXG00005006035	KCNJ3 (ENSBIXG00005019661) #22	NR4A2 (ENSBIXG00005019759) #24	GPD2 (ENSBIXG00005019923) #25	ENSBIXG00005019967	GALNT5 (ENSBIXG00005019996) #26	ERMN (ENSBIXG00005020022) #27	CYTIP (ENSBIXG00005020041) #28	ACVR1C (ENSBIXG00005020094) #29	ACVR1 (ENSBIXG00005020163) #30	UPP2 (ENSBIXG00005003353) #31	CCDC148 (ENSBIXG00005003408) #32	PKP4 (ENSBIXG00005020435) #33	DAPL1 (ENSBIXG00005007153) #35	TANC1 (ENSBIXG00005020592) #36	WDSUB1 (ENSBIXG00005020681) #37	ENSBIXG00005020720
Bos_a	ANCESTRAL SPECIES	4	ENSGT00530000063686.a.b	ENSGT00530000063686.a.a	ENSGT00940000157201 #7	ENSGT00390000012204 #8	ENSGT00940000154533.b.d #9	ENSGT00940000154714 #10	ENSGT00950000182837.b.b #11	ENSGT00940000157055 #13	ENSGT00390000018085.a.b.b	ENSGT00940000155515.a.b.b.l #15	ENSGT00930000150980.a #16	ENSGT00390000009987 #17	ENSGT00390000007818.e.b.b	ENSGT00390000010523.c.b #18	ENSGT00940000158904 #19	ENSGT01080000257365.b.a.a.b.a #22	ENSGT00950000183038.a.b.b.b #24	ENSGT00390000001718 #25	ENSGT00940000155602.i.a	ENSGT00940000159241 #26	ENSGT01090000260082.d.a.a.a.b #27	ENSGT00530000063734.a #28	ENSGT00940000158842 #29	ENSGT00940000160160 #30	ENSGT00940000161094 #31	ENSGT00940000153988.A #32	ENSGT00940000155773.b.f #33	ENSGT00940000154574.d #35	ENSGT00940000155655.B #36	ENSGT00940000157230 #37	ENSGT00940000155359
Wild yak	MODERN SPECIES	816														ENSBMUG00000024508 ##20	GALNT13 (ENSBMUG00000024495) #19	ENSBMUG00000024430 #22
Domestic yak	MODERN SPECIES	11	RIF1 (ENSBGRG00000005974) #8	NEB (ENSBGRG00000006143) #9	ENSBGRG00000008336	ARL5A (ENSBGRG00000008374) #10	CACNB4 (ENSBGRG00000008687) #11	STAM2 (ENSBGRG00000015223) #13	FMNL2 (ENSBGRG00000015350) #15	PRPF40A (ENSBGRG00000015929) #16	ARL6IP6 (ENSBGRG00000016671) #17	ENSBGRG00000016778	ENSBGRG00000007210	RPRM (ENSBGRG00000007262) #18	GALNT13 (ENSBGRG00000007349) #19	ENSBGRG00000007820 ##20	ENSBGRG00000007847	KCNJ3 (ENSBGRG00000007869) #22	NR4A2 (ENSBGRG00000007951) #24	GPD2 (ENSBGRG00000008160) #25	ENSBGRG00000008596	GALNT5 (ENSBGRG00000008625) #26	ERMN (ENSBGRG00000008771) #27	CYTIP (ENSBGRG00000008859) #28	ACVR1C (ENSBGRG00000009051) #29	ACVR1 (ENSBGRG00000009529) #30	UPP2 (ENSBGRG00000009647) #31	CCDC148 (ENSBGRG00000009770) #32	PKP4 (ENSBGRG00000010064) #33	ENSBGRG00000010385	TANC1 (ENSBGRG00000010534) #36	WDSUB1 (ENSBGRG00000010639) #37	BAZ2B (ENSBGRG00000010962)