Gnathostomata ANCESTRAL SPECIES 10 ENSGT00940000154314 ENSGT00940000154352.A ENSGT00390000015799 ENSGT00950000182859.A.b ENSGT00550000075030 ENSGT00940000160593 ENSGT00950000182864.a.a ENSGT00390000013415.a.a ENSGT00940000153713.E ENSGT01030000234527.A.a.b.a.b ENSGT00940000160573 ENSGT00390000007203 ENSGT00940000160735 ENSGT00390000015226.d ENSGT00940000161547 ENSGT01030000234549.a.b #22 ENSGT00990000208599 ENSGT00570000079216 ENSGT00940000160175.b ##24 ENSGT00390000011408 ENSGT00940000165097 ENSGT00940000158584 ENSGT00940000155715 ENSGT00940000162006 ENSGT00940000156981 ENSGT00940000156590 ENSGT00940000155847 ENSGT00940000153710.a Euteleostomi ANCESTRAL SPECIES 4 ENSGT00940000156570.a ENSGT00940000154352.A ENSGT00390000015799 ENSGT00950000182859.A.b ENSGT00550000075030 ENSGT00940000160593 ENSGT00950000182864.a.a ENSGT00390000013415.a.a ENSGT00940000153713.E ENSGT01030000234527.A.a.b.a.b ENSGT00940000160573 ENSGT00390000007203 ENSGT00940000160735 ENSGT00390000015226.d ENSGT00940000161547 ENSGT01030000234549.a.b #22 ENSGT00990000208599 ENSGT00570000079216 ENSGT00940000164278 #23 ENSGT00940000160175.b ##24 ENSGT00390000011408 ENSGT00940000165215 ENSGT00940000164759 ENSGT00940000158584 ENSGT00940000155715 ENSGT00940000162006 ENSGT00940000156981 ENSGT00940000156590 ENSGT00940000155847 ENSGT00940000157500 ENSGT00940000158949 Actinopterygii ANCESTRAL SPECIES 7 ENSGT00940000156570.a ENSGT00940000154352.A ENSGT00390000015799 ENSGT00950000182859.A.b ENSGT00550000075030 ENSGT00940000160593 ENSGT00950000182864.a.a ENSGT00390000013415.a.a ENSGT00940000153713.E ENSGT01030000234527.A.a.b.a.b ENSGT00940000160573 ENSGT00390000007203 ENSGT00940000160735 ENSGT00390000015226.d ENSGT00940000161547 ENSGT01030000234549.a.b #22 ENSGT00990000208599 ENSGT00570000079216 ENSGT00940000164278 #23 ENSGT00940000160175.b ##24 ENSGT00390000011408 ENSGT00940000165215 ENSGT00940000164759 ENSGT00940000158584 ENSGT00940000155715 ENSGT00940000162006 ENSGT00940000156981 ENSGT00940000156590 ENSGT00940000157500 ENSGT00940000158949 ENSGT00390000009948.c Neopterygii ANCESTRAL SPECIES 10 ENSGT00940000156570.a ENSGT00940000154352.A ENSGT00390000015799 ENSGT00950000182859.A.b ENSGT00550000075030 ENSGT00940000160593 ENSGT00950000182864.a.a ENSGT00390000013415.a.a ENSGT00940000153713.E ENSGT01030000234527.A.a.b.a.b ENSGT00940000160573 ENSGT00390000007203 ENSGT00940000160735 ENSGT00390000015226.d ENSGT00940000161547 ENSGT01030000234549.a.b #22 ENSGT00990000208599 ENSGT00570000079216 ENSGT00940000164278 #23 ENSGT00940000160175.b ##24 ENSGT00390000011408 ENSGT00940000165215 ENSGT00940000164759 ENSGT00940000158584 ENSGT00940000155715 ENSGT00940000162006 ENSGT00940000156981 ENSGT00940000156590 ENSGT00940000157500 ENSGT00940000158949 ENSGT00390000009948.c Osteoglossocephalai ANCESTRAL SPECIES 65 ENSGT00940000155560.k #30 ENSGT00940000156754.a.b.b #29 ENSGT00940000159732.a #28 ENSGT00940000159732.b ##28 ENSGT00940000159235 ENSGT00940000153195.B #27 ENSGT00940000154537.kb #26 ENSGT00940000154537.lb ##26 ENSGT00390000016042 ENSGT00600000084626 ENSGT00940000160573 ENSGT00390000007203 ENSGT00940000160735 ENSGT00390000015226.d ENSGT00940000161547 ENSGT01030000234549.a.b #22 ENSGT00570000079216 ENSGT00940000164278 #23 ENSGT00940000160175.b ##24 ENSGT00390000011408 ENSGT00940000165215.a ENSGT00940000165215.b ENSGT00940000164759 ENSGT00940000158584 ENSGT00940000155715 ENSGT00940000162006 ENSGT00940000156981 ENSGT00940000156590 ENSGT00940000157500 ENSGT00940000158949 ENSGT00390000009948.c Clupeocephala ANCESTRAL SPECIES 138 ENSGT00940000155560.l ##30 ENSGT00390000005203 ENSGT00610000086460 ENSGT00940000156754.a.b.a ##29 ENSGT00940000159732.b ##28 ENSGT00940000159235 ENSGT00940000154537.lb ##26 ENSGT00390000016042 ENSGT00600000084626 ENSGT00940000160573 ENSGT00390000007203 ENSGT00940000160735 ENSGT00390000015226.d ENSGT00940000161547 ENSGT01030000234549.a.b #22 ENSGT00570000079216 ENSGT00940000164278 #23 ENSGT00940000160175.b ##24 ENSGT00390000011408 ENSGT00940000165215.a ENSGT00940000165215.b ENSGT00940000164759 ENSGT00940000158584 ENSGT00940000177920 ENSGT00940000155715 ENSGT00940000160595.a.a ##25 ENSGT00940000156981 ENSGT00940000156590 ENSGT00940000157500 ENSGT00940000158949 Otomorpha ANCESTRAL SPECIES 238 ENSGT00940000154537.lb ##26 ENSGT00390000016042 ENSGT00600000084626 ENSGT00940000160573 ENSGT00390000007203 ENSGT00940000160735 ENSGT00390000015226.d ENSGT00940000161547 ENSGT01030000234549.a.b #22 ENSGT00570000079216 ENSGT00940000164278 #23 ENSGT00940000160175.b ##24 ENSGT00390000011408 ENSGT00940000165215.a ENSGT00940000165215.b ENSGT00940000164759 ENSGT00940000158584 ENSGT00940000177920 ENSGT00940000155715 ENSGT00940000160595.a.a ##25 ENSGT00940000156981 ENSGT00940000157500 ENSGT00940000158949 ENSGT00390000009948.c Otophysi ANCESTRAL SPECIES 221 ENSGT00390000016042 ENSGT00600000084626 ENSGT00940000160573 ENSGT00390000007203 ENSGT00940000160735 ENSGT00390000015226.d ENSGT00940000161547 ENSGT01030000234549.a.b #22 ENSGT00570000079216 ENSGT00940000164278 #23 ENSGT00940000160175.b ##24 ENSGT00390000011408 ENSGT00940000165215.a ENSGT00940000165215.b ENSGT00940000164759 ENSGT00940000158584 ENSGT00940000155715 ENSGT00940000175397 ENSGT00940000156981 ENSGT00940000157500 ENSGT00940000158949 ENSGT00390000009948.c ENSGT00940000155780 Characiphysae ANCESTRAL SPECIES 9 ENSGT00940000156106 ENSGT00940000158704 ENSGT00940000158072 ENSGT00940000159132.a ENSGT00940000156502 ENSGT00940000164764.j.a ENSGT00940000157908.g ENSGT00400000022158.a.c ENSGT00390000016042 ENSGT00600000084626 ENSGT00940000160573 ENSGT00390000007203 ENSGT00940000160735 ENSGT00390000015226.d ENSGT00940000161547 ENSGT01030000234549.a.b #22 ENSGT00570000079216 ENSGT00940000164278 #23 ENSGT00940000160175.b ##24 ENSGT00390000011408 ENSGT00940000165215.a ENSGT00940000165215.b ENSGT00940000164759 ENSGT00940000158584 ENSGT00940000155715 ENSGT00940000175397 ENSGT00940000156981 ENSGT00940000157500 ENSGT00940000158949 ENSGT00390000009948.c ENSGT00940000155780 Characiphysae_b ANCESTRAL SPECIES 29 ENSGT00940000156106 ENSGT00940000158704 ENSGT00940000158072 ENSGT00940000159132.a ENSGT00940000156502 ENSGT00940000164764.j.a ENSGT00940000157908.g ENSGT00400000022158.a.c ENSGT00390000016042 ENSGT00600000084626 ENSGT00940000160573 ENSGT00390000007203 ENSGT00940000160735 ENSGT00390000015226.d ENSGT00940000161547 ENSGT01030000234549.a.b #22 ENSGT00570000079216 ENSGT00940000164278 #23 ENSGT00940000160175.b ##24 ENSGT00390000011408 ENSGT00940000165215.a ENSGT00940000165215.b ENSGT00940000164759 ENSGT00940000158584 ENSGT00940000155715 ENSGT00940000175397 ENSGT00940000156981 ENSGT00940000157500 ENSGT00940000158949 ENSGT00390000009948.c ENSGT00940000155780 Characoidei ANCESTRAL SPECIES 19 ENSGT00940000156106 ENSGT00940000158704 ENSGT00940000158072 ENSGT00940000159132.a ENSGT00940000156502 ENSGT00940000164764.j.a ENSGT00940000157908.g ENSGT00400000022158.a.c ENSGT00390000016042 ENSGT00600000084626 ENSGT00940000160573 ENSGT00390000007203 ENSGT00940000160735 ENSGT00390000015226.d ENSGT00940000161547 ENSGT01030000234549.a.b #22 ENSGT00570000079216 ENSGT00940000164278 #23 ENSGT00940000160175.b ##24 ENSGT00390000011408 ENSGT00940000165215.a ENSGT00940000165215.b ENSGT00940000164759 ENSGT00940000158584 ENSGT00940000155715 ENSGT00940000175397 ENSGT00940000156981 ENSGT00940000157500 ENSGT00940000158949 ENSGT00390000009948.c ENSGT00940000155780 Red-bellied piranha DUPLICATION Red-bellied piranha MODERN SPECIES 42 prr15lb (ENSPNAG00000008267) #7 cdk5rap3 (ENSPNAG00000008263) #8 ENSPNAG00000008256 #9 NFE2L1 (ENSPNAG00000008250) #10 cbx1b (ENSPNAG00000000806) #11 phkg2 (ENSPNAG00000008236) #12 ccdc189 (ENSPNAG00000000790) #13 RNF40 (ENSPNAG00000008210) #14 ENSPNAG00000000750 #15 znf668 (ENSPNAG00000008178) #16 ENSPNAG00000000742 #17 ENSPNAG00000000738 #18 ENSPNAG00000000733 #19 cd37 (ENSPNAG00000008159) #20 gall (ENSPNAG00000008151) #21 valopb (ENSPNAG00000008142) #22 gabrz (ENSPNAG00000000698) #23 ENSPNAG00000008123 #24 ENSPNAG00000008118 #25 mxtx2 (ENSPNAG00000000685) #26 bms1 (ENSPNAG00000000676) #27 SH2D4B (ENSPNAG00000008093) #28 ENSPNAG00000029573 #29 gfra1b (ENSPNAG00000029491) #30 ATRNL1 (ENSPNAG00000029486) #31 trub1 (ENSPNAG00000006881) #32 ablim1b (ENSPNAG00000004570) #33 AFAP1L2 (ENSPNAG00000029300) #34 KBTBD13 (ENSPNAG00000004553) #35 tdrd1 (ENSPNAG00000005831) #36 ENSPNAG00000004506 #37 Red-bellied piranha MODERN SPECIES 45 sav1 (ENSPNAG00000002640) atl1 (ENSPNAG00000002623) map4k5 (ENSPNAG00000013153) cdkl1 (ENSPNAG00000002502) dmac2l (ENSPNAG00000012970) klc4 (ENSPNAG00000002482) PTK7 (ENSPNAG00000012880) srfb (ENSPNAG00000002394) tmem254 (ENSPNAG00000012736) ENSPNAG00000002368 STK32C (ENSPNAG00000012642) ENSPNAG00000012617 PWWP2B (ENSPNAG00000012612) INPP5A (ENSPNAG00000002313) nkx6.2 (ENSPNAG00000012538) valopa (ENSPNAG00000002282) ##22 CFAP46 (ENSPNAG00000012504) ENSPNAG00000005548 ##23 ENSPNAG00000012411 ##24 KNDC1 (ENSPNAG00000002210) vox (ENSPNAG00000002188) ENSPNAG00000012311 ENSPNAG00000012296 dntt (ENSPNAG00000012283) blnk (ENSPNAG00000012255) ENSPNAG00000002160 CCNJ (ENSPNAG00000002156) BTAF1 (ENSPNAG00000012196) cpeb3 (ENSPNAG00000012111) marchf5 (ENSPNAG00000012019) ide (ENSPNAG00000011967) Mexicana tetra DUPLICATION Mexicana tetra MODERN SPECIES 1315 ENSAMXG00000041014 valopa (ENSAMXG00000037317) #22 ENSAMXG00000038614 ENSAMXG00000029056 Mexicana tetra MODERN SPECIES 19 prr15lb (ENSAMXG00000025204) #7 cdk5rap3 (ENSAMXG00000010548) #8 ENSAMXG00000041328 #9 NFE2L1 (ENSAMXG00000030120) #10 ENSAMXG00000041124 cbx1b (ENSAMXG00000036601) #11 phkg2 (ENSAMXG00000040543) #12 RNF40 (ENSAMXG00000010694) #14 ENSAMXG00000035525 #15 znf668 (ENSAMXG00000025205) #16 ENSAMXG00000029663 #17 ENSAMXG00000025206 #18 ENSAMXG00000037059 #19 cd37 (ENSAMXG00000010877) #20 gall (ENSAMXG00000041060) #21 valopb (ENSAMXG00000010897) #22 gabrz (ENSAMXG00000041040) #23 ENSAMXG00000033781 #24 ENSAMXG00000043059 #25 mxtx2 (ENSAMXG00000039693) #26 bms1 (ENSAMXG00000011236) #27 SH2D4B (ENSAMXG00000011484) #28 ENSAMXG00000030364 ENSAMXG00000041835 #29 gfra1b (ENSAMXG00000000090) #30 ATRNL1 (ENSAMXG00000011688) #31 cyth1b (ENSAMXG00000032126) timp2a (ENSAMXG00000032674) sfxn2 (ENSAMXG00000012045) arl3b (ENSAMXG00000037720) trim8b (ENSAMXG00000012070) Electric eel DUPLICATION Electric eel MODERN SPECIES 377 srfb (ENSEEEG00000017352) ENSEEEG00000017351 tmem254 (ENSEEEG00000017350) ENSEEEG00000017349 STK32C (ENSEEEG00000017348) PWWP2B (ENSEEEG00000017346) INPP5A (ENSEEEG00000017276) nkx6.2 (ENSEEEG00000017267) ENSEEEG00000016908 #22 ENSEEEG00000016882 ENSEEEG00000016879 ENSEEEG00000016878 drap1 (ENSEEEG00000016877) zgc:63470 (ENSEEEG00000016875) rela (ENSEEEG00000016874) ENSEEEG00000016873 Electric eel MODERN SPECIES 369 mrpl10 (ENSEEEG00000006332) pnpo (ENSEEEG00000006316) prr15lb (ENSEEEG00000006315) #7 cdk5rap3 (ENSEEEG00000006028) #8 NFE2L1 (ENSEEEG00000006006) #10 cbx1b (ENSEEEG00000006003) #11 phkg2 (ENSEEEG00000005928) #12 ccdc189 (ENSEEEG00000005919) #13 RNF40 (ENSEEEG00000005910) #14 ENSEEEG00000005904 #15 ENSEEEG00000005903 znf668 (ENSEEEG00000005902) #16 ENSEEEG00000005901 #18 cd37 (ENSEEEG00000005899) #20 gall (ENSEEEG00000005897) #21 valopb (ENSEEEG00000005578) #22 gabrz (ENSEEEG00000005560) #23 ENSEEEG00000005557 #25 mxtx2 (ENSEEEG00000005556) #26 bms1 (ENSEEEG00000005542) #27 SH2D4B (ENSEEEG00000005534) #28 Channel catfish DUPLICATION Channel catfish MODERN SPECIES 22 sav1 (ENSIPUG00000019636) ATL1 (ENSIPUG00000019583) map4k5 (ENSIPUG00000019520) cdkl1 (ENSIPUG00000019505) ATP5S (ENSIPUG00000019488) ENSIPUG00000019464 PTK7 (ENSIPUG00000019376) srf (ENSIPUG00000019339) Tmem254 (ENSIPUG00000019312) srr (ENSIPUG00000019247) STK32C (ENSIPUG00000019224) ENSIPUG00000019201 PWWP2B (ENSIPUG00000019195) inpp5a (ENSIPUG00000019113) nkx6-2 (ENSIPUG00000019098) valopa (ENSIPUG00000019050) #22 ENSIPUG00000019037 ENSIPUG00000019015 ENSIPUG00000018998 #23 adgra1 (ENSIPUG00000018953) ##24 kndc1 (ENSIPUG00000018902) ventx (ENSIPUG00000018889) HS3ST1 (ENSIPUG00000018884) dntt (ENSIPUG00000018851) ENSIPUG00000018799 znf518a (ENSIPUG00000018787) ccnj (ENSIPUG00000018774) BTAF1 (ENSIPUG00000018620) cpeb3 (ENSIPUG00000018571) march5 (ENSIPUG00000018537) ide (ENSIPUG00000018484) Channel catfish MODERN SPECIES 4 prr15lb (ENSIPUG00000018303) #7 cdk5rap3 (ENSIPUG00000018270) #8 ENSIPUG00000018255 #9 NFE2L1 (ENSIPUG00000018201) #10 cbx1 (ENSIPUG00000018189) #11 ccdc189 (ENSIPUG00000018176) #13 PHKG2 (ENSIPUG00000018153) #12 RNF40 (ENSIPUG00000018115) #14 ENSIPUG00000018102 #15 znf668 (ENSIPUG00000018095) #16 ENSIPUG00000018093 #18 ENSIPUG00000018087 #18 ENSIPUG00000018080 #19 CD82 (ENSIPUG00000018027) #20 gal (ENSIPUG00000018006) #21 valopb (ENSIPUG00000017998) #22 gabrz (ENSIPUG00000017975) #23 ENSIPUG00000017968 #24 ENSIPUG00000017958 #25 mxtx2 (ENSIPUG00000017954) #26 bms1 (ENSIPUG00000017855) #27 SH2D4B (ENSIPUG00000017819) #28 ENSIPUG00000017804 #29 gfra1 (ENSIPUG00000017781) #30 Atrnl1 (ENSIPUG00000017611) #31 trub1 (ENSIPUG00000017559) #32 ablim1b (ENSIPUG00000017391) #33 KBTBD13 (ENSIPUG00000017373) #35 afap1l2 (ENSIPUG00000017345) #34 vwa2 (ENSIPUG00000017309) tdrd1 (ENSIPUG00000017232) #36 Cyprinoidei ANCESTRAL SPECIES 185 ENSGT00940000164764.i.b ENSGT00940000157908.g ENSGT00400000022158.a ENSGT00940000164764.j.a ENSGT00940000153244.A ENSGT00390000016042 ENSGT00600000084626 ENSGT00940000160573 ENSGT00940000160735 ENSGT00390000015226.d ENSGT00940000161547 ENSGT01030000234549.a.b #22 ENSGT00570000079216 ENSGT00940000164278 #23 ENSGT00940000160175.b ##24 Cyprininae DUPLICATION Cyprininae DUPLICATION Cyprininae ANCESTRAL SPECIES 796 ENSGT00390000016042.v.a.a ENSGT00940000160573.k.a ENSGT00940000160735.c ENSGT00390000015226.d ENSGT00940000161547.g.a ENSGT00940000161547.h ENSGT01030000234549.a.b.s.a #22 ENSGT00940000164278.c.a #23 ENSGT00940000160175.b.c ##24 Cyprininae_a DUPLICATION Cyprininae_a ANCESTRAL SPECIES 663 ENSGT00940000160573.k.a ENSGT00940000160735.c ENSGT00390000015226.d.d ENSGT00940000161547.g.a ENSGT01030000234549.a.b.s.a.a #22 ENSGT00940000164278.c.a #23 ENSGT00940000160175.b.c ##24 Common carp reference MODERN SPECIES 18 slc30a10 (ENSCCRG00000059043) lclat1 (ENSCCRG00000064289) ENSCCRG00000020282 ENSCCRG00000069150 ENSCCRG00000053813 ENSCCRG00000081402 PTK7 (ENSCCRG00000019402) ENSCCRG00000010238 ENSCCRG00000032973 ENSCCRG00000062767 STK32C (ENSCCRG00000012039) PWWP2B (ENSCCRG00000068911) INPP5A (ENSCCRG00000061360) nkx6.2 (ENSCCRG00000073800) ENSCCRG00000057951 valopa (ENSCCRG00000049544) #22 ENSCCRG00000078714 #23 ENSCCRG00000063083 ENSCCRG00000081671 ##24 KNDC1 (ENSCCRG00000053314) vox (ENSCCRG00000005196) ENSCCRG00000005203 ENSCCRG00000063277 ENSCCRG00000071898 dntt (ENSCCRG00000069298) blnk (ENSCCRG00000042136) ENSCCRG00000056399 ENSCCRG00000023179 ENSCCRG00000074425 cox5b2 (ENSCCRG00000080759) ENSCCRG00000044698 Golden-line barbel MODERN SPECIES 1516 valopa (ENSSGRG00000019395) #22 ENSSGRG00000019393 #23 ENSSGRG00000019392 ##24 Cyprininae_a ANCESTRAL SPECIES 1057 ENSGT00940000161547.h ENSGT01030000234549.a.b.s.a.b #22 Golden-line barbel MODERN SPECIES 1472 ENSSGRG00000007325 INPP5A (ENSSGRG00000007320) nkx6.2 (ENSSGRG00000007318) valopa (ENSSGRG00000007317) #22 Cyprininae ANCESTRAL SPECIES 406 ENSGT00940000157952 ENSGT00940000154800.e ENSGT00940000179241 ENSGT00940000159967 ENSGT00950000182836.a ENSGT00390000009189.o ENSGT00950000183209.b.a.a.h.a.a ENSGT00940000164764.j.a.b ENSGT00940000157908.g.i ENSGT00400000022158.a.e ENSGT00390000016042.u ENSGT00600000084626 ENSGT00940000160573.k.b ENSGT00940000160735.d ENSGT00940000161547.g.b ENSGT01030000234549.a.b.s.b #22 ENSGT00570000079216 ENSGT00940000164278.c.b #23 ENSGT00940000160175.b.d ##24 ENSGT00390000011408 ENSGT00940000165215.a.a ENSGT00940000164759.f ENSGT00940000158584.a ENSGT00940000155715.ub.a ENSGT00940000156981.t ENSGT00940000158924.d Cyprininae_a ANCESTRAL SPECIES 215 ENSGT00390000009189.o ENSGT00950000183209.b.a.a.h.a.a ENSGT00940000164764.j.a.b ENSGT00950000183209.b.a.a.g ENSGT00940000164764.i.b ENSGT00940000164764.j.a.a ENSGT00940000157908.g.i ENSGT00400000022158.a.e ENSGT00390000016042.v.a.a ENSGT00390000016042.u ENSGT00600000084626 ENSGT00940000160573.k.b ENSGT00940000160735.d ENSGT00390000015226.d.c ENSGT00940000161547.g.b ENSGT01030000234549.a.b.s.b #22 ENSGT00570000079216 ENSGT00940000164278.c.b #23 ENSGT00940000160175.b.d ##24 ENSGT00390000011408 ENSGT00940000165215.a.a ENSGT00940000165215.b.f ENSGT00940000165215.a.b ENSGT00940000165215.b.e ENSGT00940000164759.e ENSGT00940000158584.b ENSGT00940000155715.ub.b ENSGT00940000175397.b ENSGT00940000156981.s ENSGT00940000158924.c.a ENSGT00940000158924.c.b Common carp reference MODERN SPECIES 48 ENSCCRG00000012461 ENSCCRG00000070640 lclat1 (ENSCCRG00000075534) lbh (ENSCCRG00000005924) ENSCCRG00000059348 mrpl2 (ENSCCRG00000074213) ENSCCRG00000020240 PTK7 (ENSCCRG00000011709) SRF (ENSCCRG00000065991) ENSCCRG00000075336 ENSCCRG00000012050 STK32C (ENSCCRG00000012047) PWWP2B (ENSCCRG00000006416) INPP5A (ENSCCRG00000069836) nkx6.2 (ENSCCRG00000065672) valopa (ENSCCRG00000081246) #22 ENSCCRG00000048650 ENSCCRG00000069141 ENSCCRG00000064097 ENSCCRG00000071476 ENSCCRG00000074668 ENSCCRG00000055420 ENSCCRG00000057732 ENSCCRG00000059185 ENSCCRG00000034371 ENSCCRG00000067262 ENSCCRG00000007076 ENSCCRG00000058697 ENSCCRG00000064010 ENSCCRG00000022439 #23 ENSCCRG00000068907 ##24 Golden-line barbel MODERN SPECIES 1281 ENSSGRG00000050889 #22 ENSSGRG00000050890 ENSSGRG00000050896 Goldfish DUPLICATION Goldfish DUPLICATION Goldfish MODERN SPECIES 2458 valopa (ENSCARG00000063610) #22 ENSCARG00000063702 Goldfish MODERN SPECIES 31 tmem254 (ENSCARG00000007283) ENSCARG00000007269 ENSCARG00000007259 ENSCARG00000007027 mrpl2 (ENSCARG00000006977) lbh (ENSCARG00000006964) slc30a10 (ENSCARG00000006952) ENSCARG00000006943 ypel5 (ENSCARG00000006936) ENSCARG00000006932 KLHDC3 (ENSCARG00000006903) ENSCARG00000006884 PWWP2B (ENSCARG00000006877) INPP5A (ENSCARG00000006768) nkx6.2 (ENSCARG00000006751) valopa (ENSCARG00000006669) #22 ENSCARG00000006649 ENSCARG00000006634 PTK7 (ENSCARG00000006365) srfb (ENSCARG00000006337) ARID4B (ENSCARG00000006220) tomm20a (ENSCARG00000006156) irf2bp2a (ENSCARG00000006135) ENSCARG00000006128 EGLN1 (ENSCARG00000006105) tsnax (ENSCARG00000006059) disc1 (ENSCARG00000024106) SIPA1L2 (ENSCARG00000024068) ntpcr (ENSCARG00000024049) Goldfish MODERN SPECIES 4 NID1 (ENSCARG00000017244) gpr137ba (ENSCARG00000017124) pkz (ENSCARG00000017111) eif2ak2 (ENSCARG00000017094) gpatch11 (ENSCARG00000017085) MYPN (ENSCARG00000016666) cox5b2 (ENSCARG00000016630) dnajc12 (ENSCARG00000016615) ENSCARG00000016602 ENSCARG00000016596 blnk (ENSCARG00000016568) dntt (ENSCARG00000016533) INPP5A (ENSCARG00000016164) nkx6.2 (ENSCARG00000016123) tmem254 (ENSCARG00000016115) valopa (ENSCARG00000016078) #22 ENSCARG00000016049 #23 ENSCARG00000016039 ENSCARG00000015861 ##24 ENSCARG00000015813 vox (ENSCARG00000015807) ENSCARG00000015802 dntt (ENSCARG00000015747) npas4l (ENSCARG00000015735) ypel5 (ENSCARG00000015733) slc30a10 (ENSCARG00000015729) lclat1 (ENSCARG00000015723) lbh (ENSCARG00000015712) ENSCARG00000015635 ENSCARG00000015617 PTK7 (ENSCARG00000014262) Cyprininae DUPLICATION Cyprininae ANCESTRAL SPECIES 172 ENSGT00940000166447.a ENSGT00940000157439.b.b ENSGT00390000000603 ENSGT00390000011219.e.a ENSGT00940000154534.b.b.e #7 ENSGT00390000011219.f ENSGT00750000118756.a #9 ENSGT00950000182892.a.b.a.b.a.e #10 ENSGT00940000154152.b.b.a #11 ENSGT00940000160435.d #12 ENSGT00940000154323.a #13 ENSGT00390000002866.a.a #14 ENSGT00940000164729.a.b.g #15 ENSGT00940000165156.e #16 ENSGT00990000204711.a #21 ENSGT01030000234549.a.b.t.a #22 ENSGT00940000164278.d.a #23 ENSGT00940000160175.a.b #24 ENSGT00940000160595.a.b.a #25 ENSGT00940000154537.kb.b #26 ENSGT00940000153195.B.m #27 ENSGT00940000159732.a.b #28 ENSGT00940000156754.a.b.b.d.a #29 ENSGT00940000155560.k.a #30 ENSGT00940000155790.c.b #31 ENSGT00940000158962.a.b #32 ENSGT00950000182850.a.a.a #33 ENSGT00940000161629.b.a #35 ENSGT00950000183067.a.b.b.kc.b #34 ENSGT00940000159040.e ENSGT00940000158754.g #36 Goldfish MODERN SPECIES 2288 cdk5r1b (ENSCARG00000066257) ENSCARG00000060553 PDK2 (ENSCARG00000058980) TBKBP1 (ENSCARG00000058853) tbx21 (ENSCARG00000058837) osbpl7 (ENSCARG00000058721) ENSCARG00000058662 prr15lb (ENSCARG00000058654) #7 NFE2L1 (ENSCARG00000058638) #10 cbx1b (ENSCARG00000058530) #11 phkg2 (ENSCARG00000058370) #12 RNF40 (ENSCARG00000058123) #14 ENSCARG00000058046 #15 znf668 (ENSCARG00000058027) #16 gall (ENSCARG00000058003) #21 valopb (ENSCARG00000057974) #22 gabrz (ENSCARG00000057947) #23 ENSCARG00000057938 #24 ENSCARG00000057929 #25 mxtx2 (ENSCARG00000057917) #26 bms1 (ENSCARG00000057803) #27 SH2D4B (ENSCARG00000057772) #28 ENSCARG00000057743 #29 gfra1b (ENSCARG00000057705) #30 ATRNL1 (ENSCARG00000056439) #31 trub1 (ENSCARG00000056273) #32 ablim1b (ENSCARG00000050770) #33 KBTBD13 (ENSCARG00000050616) #35 AFAP1L2 (ENSCARG00000050600) #34 ENSCARG00000050579 tdrd1 (ENSCARG00000050447) #36 Cyprininae_a ANCESTRAL SPECIES 8 ENSGT00940000166447.a ENSGT00940000157439.b.b ENSGT00390000000603 ENSGT00390000011219.e.a ENSGT00940000154534.b.b.e #7 ENSGT00390000011219.f ENSGT00750000118756.a #9 ENSGT00950000182892.a.b.a.b.a.e #10 ENSGT00940000154152.b.b.a #11 ENSGT00940000160435.d #12 ENSGT00940000154323.a #13 ENSGT00390000002866.a.a #14 ENSGT00940000164729.a.b.g #15 ENSGT00940000165156.e #16 ENSGT00990000204711.a #21 ENSGT01030000234549.a.b.t.a #22 ENSGT00940000164278.d.a #23 ENSGT00940000160175.a.b #24 ENSGT00940000160595.a.b.a #25 ENSGT00940000154537.kb.b #26 ENSGT00940000153195.B.m #27 ENSGT00940000159732.a.b #28 ENSGT00940000156754.a.b.b.d.a #29 ENSGT00940000155560.k.a #30 ENSGT00940000155790.c.b #31 ENSGT00940000158962.a.b #32 ENSGT00950000182850.a.a.a.b #33 ENSGT00940000161629.b.a #35 ENSGT00950000183067.a.b.b.kc.b #34 ENSGT00940000159040.e ENSGT00940000158754.g #36 Common carp reference MODERN SPECIES 44 TBKBP1 (ENSCCRG00000082246) tbx21 (ENSCCRG00000054449) osbpl7 (ENSCCRG00000027561) prr15lb (ENSCCRG00000055334) #7 pnpo (ENSCCRG00000073591) ENSCCRG00000062559 #9 ENSCCRG00000027591 #10 phkg2 (ENSCCRG00000031070) #12 cbx1b (ENSCCRG00000027598) #11 ENSCCRG00000030924 #14 ENSCCRG00000038032 #15 znf668 (ENSCCRG00000038033) #16 ENSCCRG00000074365 ENSCCRG00000078530 #19 gall (ENSCCRG00000038042) #21 valopb (ENSCCRG00000018658) #22 gabrz (ENSCCRG00000074636) #23 ENSCCRG00000074089 ENSCCRG00000053401 #24 ENSCCRG00000059155 ENSCCRG00000082440 #25 mxtx2 (ENSCCRG00000027959) #26 bms1 (ENSCCRG00000027827) #27 ENSCCRG00000052053 #28 ENSCCRG00000049080 #29 gfra1b (ENSCCRG00000074130) #30 ATRNL1 (ENSCCRG00000022800) #31 trub1 (ENSCCRG00000024946) #32 ablim1b (ENSCCRG00000010246) #33 ENSCCRG00000079495 #35 AFAP1L2 (ENSCCRG00000001549) #34 Golden-line barbel MODERN SPECIES 887 tbx21 (ENSSGRG00000046036) osbpl7 (ENSSGRG00000046037) mrpl10 (ENSSGRG00000046038) pnpo (ENSSGRG00000046039) prr15lb (ENSSGRG00000046068) #7 ENSSGRG00000046070 #8 NFE2L1 (ENSSGRG00000046100) #10 phkg2 (ENSSGRG00000046074) #12 cbx1b (ENSSGRG00000046102) #11 ccdc189 (ENSSGRG00000046110) #13 RNF40 (ENSSGRG00000046152) #14 ENSSGRG00000047114 #15 znf668 (ENSSGRG00000047115) #16 ENSSGRG00000047119 #18 cd37 (ENSSGRG00000047122) #20 valopb (ENSSGRG00000047125) #22 gabrz (ENSSGRG00000047127) #23 ENSSGRG00000047128 #24 ENSSGRG00000047129 #25 mxtx2 (ENSSGRG00000047130) #26 bms1 (ENSSGRG00000047142) #27 SH2D4B (ENSSGRG00000047324) #28 ENSSGRG00000047325 #29 Cyprininae ANCESTRAL SPECIES 64 ENSGT00940000153704.B.c.a ENSGT00940000166447.b ENSGT00940000157439.b.a ENSGT00390000011219.e.b ENSGT00940000154534.b.b.f #7 ENSGT00390000000713 #8 ENSGT00950000182892.a.b.a.b.a.f #10 ENSGT00940000154152.b.b.b #11 ENSGT00940000160435.c #12 ENSGT00390000002866.a.b #14 ENSGT00940000164729.a.b.h #15 ENSGT00940000165156.f #16 ENSGT00600000085580 #18 ENSGT00940000161485 #20 ENSGT00990000204711.b #21 ENSGT01030000234549.a.b.t.b #22 ENSGT00940000164278.d.b #23 ENSGT00940000160175.a.a #24 ENSGT00940000160595.a.b.b #25 ENSGT00940000154537.kb.a #26 ENSGT00940000153195.B.n #27 ENSGT00940000159732.a.a #28 ENSGT00940000156754.a.b.b.d.b #29 Goldfish MODERN SPECIES 3 osbpl7 (ENSCARG00000002627) mrpl10 (ENSCARG00000002611) pnpo (ENSCARG00000002600) prr15lb (ENSCARG00000002595) #7 cdk5rap3 (ENSCARG00000002583) #8 NFE2L1 (ENSCARG00000002569) #10 cbx1b (ENSCARG00000002543) #11 ENSCARG00000002537 phkg2 (ENSCARG00000002488) #12 RNF40 (ENSCARG00000002345) #14 ENSCARG00000002279 #15 znf668 (ENSCARG00000002275) #16 ENSCARG00000002268 #18 cd37 (ENSCARG00000002261) #20 gall (ENSCARG00000002254) #21 valopb (ENSCARG00000002242) #22 gabrz (ENSCARG00000002231) #23 ENSCARG00000002222 #29 SH2D4B (ENSCARG00000002161) #28 bms1 (ENSCARG00000001993) #27 mxtx2 (ENSCARG00000001942) #26 ENSCARG00000001930 #25 ENSCARG00000017966 #24 CDC42EP4 (ENSCARG00000017961) ENSCARG00000017954 zgc:86738 (ENSCARG00000017947) ENSCARG00000017902 ENSCARG00000017884 ENSCARG00000017813 LZTS2 (ENSCARG00000017785) ENSCARG00000017425 Cyprininae_a ANCESTRAL SPECIES 18 ENSGT00940000153704.B.c.a ENSGT00940000166447.b ENSGT00940000157439.b.a ENSGT00390000011219.e.b ENSGT00940000154534.b.b.f #7 ENSGT00390000000713 #8 ENSGT00950000182892.a.b.a.b.a.f #10 ENSGT00940000154152.b.b.b #11 ENSGT00940000160435.c #12 ENSGT00390000002866.a.b #14 ENSGT00940000164729.a.b.h #15 ENSGT00940000165156.f #16 ENSGT00600000085580 #18 ENSGT00940000161485 #20 ENSGT00990000204711.b #21 ENSGT01030000234549.a.b.t.b #22 ENSGT00940000164278.d.b #23 ENSGT00940000160175.a.a #24 ENSGT00940000160595.a.b.b #25 ENSGT00940000154537.kb.a #26 ENSGT00940000153195.B.n #27 ENSGT00940000159732.a.a #28 ENSGT00940000156754.a.b.b.d.b #29 ENSGT00940000156754.a.b.b.c #29 ENSGT00940000155560.k.b.b #30 ENSGT00940000155790.c.a #31 ENSGT00940000158962.a.a #32 ENSGT00950000182850.a.a.a.a #33 ENSGT00950000183067.a.b.b.kc.a #34 ENSGT00940000161629.b.b #35 ENSGT00940000159040.f Common carp reference MODERN SPECIES 25 tbx21 (ENSCCRG00000027877) osbpl7 (ENSCCRG00000027864) cdk5rap3 (ENSCCRG00000027849) #8 prr15lb (ENSCCRG00000058633) #7 NFE2L1 (ENSCCRG00000027844) #10 phkg2 (ENSCCRG00000070942) #12 cbx1b (ENSCCRG00000030872) #11 ccdc189 (ENSCCRG00000030884) #13 RNF40 (ENSCCRG00000030970) #14 znf668 (ENSCCRG00000031067) #16 ENSCCRG00000058890 #15 ENSCCRG00000078537 #18 cd37 (ENSCCRG00000018649) #20 gall (ENSCCRG00000071394) #21 ENSCCRG00000055797 valopb (ENSCCRG00000078822) #22 gabrz (ENSCCRG00000059296) #23 ENSCCRG00000063866 ENSCCRG00000056081 #24 ENSCCRG00000064490 #25 mxtx2 (ENSCCRG00000028927) #26 bms1 (ENSCCRG00000027770) #27 ENSCCRG00000059380 #28 ENSCCRG00000061107 #29 ENSCCRG00000056299 #29 gfra1b (ENSCCRG00000038946) #30 ATRNL1 (ENSCCRG00000041237) #31 trub1 (ENSCCRG00000009819) #32 ablim1b (ENSCCRG00000001806) #33 AFAP1L2 (ENSCCRG00000002149) #34 ENSCCRG00000002153 #35 Golden-line barbel MODERN SPECIES 25 ENSSGRG00000016909 PDK2 (ENSSGRG00000016914) ENSSGRG00000017466 tbx21 (ENSSGRG00000017468) osbpl7 (ENSSGRG00000017476) pnpo (ENSSGRG00000017907) prr15lb (ENSSGRG00000017916) #7 nfe2l1b (ENSSGRG00000017919) #10 cbx1b (ENSSGRG00000017920) #11 phkg2 (ENSSGRG00000017924) #12 RNF40 (ENSSGRG00000017954) #14 ENSSGRG00000018862 #15 znf668 (ENSSGRG00000018864) #16 cd37 (ENSSGRG00000018868) #20 gall (ENSSGRG00000018870) #21 valopb (ENSSGRG00000018871) #22 gabrz (ENSSGRG00000018872) #23 ENSSGRG00000018874 #24 ENSSGRG00000018875 #25 mxtx2 (ENSSGRG00000018876) #26 bms1 (ENSSGRG00000018878) #27 SH2D4B (ENSSGRG00000019014) #28 ENSSGRG00000019016 #29 ENSSGRG00000019017 #29 gfra1b (ENSSGRG00000019022) #30 ATRNL1 (ENSSGRG00000019036) #31 trub1 (ENSSGRG00000019254) #32 ablim1b (ENSSGRG00000019267) #33 AFAP1L2 (ENSSGRG00000019728) #34 KBTBD13 (ENSSGRG00000019731) #35 VWA2 (ENSSGRG00000019732) Zebrafish DUPLICATION Zebrafish MODERN SPECIES 4 tmem254 (ENSDARG00000109902) ENSDARG00000109481 ENSDARG00000100613 npas4l (ENSDARG00000116511) KLHDC3 (ENSDARG00000102772) slc30a10 (ENSDARG00000103983) lclat1 (ENSDARG00000103320) ENSDARG00000111743 srfb (ENSDARG00000102867) mrpl2 (ENSDARG00000062568) ENSDARG00000108326 lbh (ENSDARG00000111701) PWWP2B (ENSDARG00000101080) nkx6.2 (ENSDARG00000104735) valopa (ENSDARG00000021150) #22 ENSDARG00000059891 #23 ENSDARG00000101663 dntt (ENSDARG00000104792) ENSDARG00000116483 vox (ENSDARG00000099761) vent (ENSDARG00000100483) ENSDARG00000109912 blnk (ENSDARG00000042722) CCNJ (ENSDARG00000059917) HERC4 (ENSDARG00000059936) cox5b2 (ENSDARG00000068738) dnajc12 (ENSDARG00000086691) SIRT1 (ENSDARG00000068064) CACUL1 (ENSDARG00000021885) ENSDARG00000109262 Zebrafish MODERN SPECIES 3 pnpo (ENSDARG00000017612) prr15lb (ENSDARG00000029308) #7 cdk5rap3 (ENSDARG00000045092) #8 ENSDARG00000096711 #9 nfe2l1b (ENSDARG00000076533) #10 cbx1b (ENSDARG00000054442) #11 phkg2 (ENSDARG00000054208) #12 ccdc189 (ENSDARG00000096777) #13 RNF40 (ENSDARG00000054201) #14 ENSDARG00000061424 #15 znf668 (ENSDARG00000025226) #16 ENSDARG00000086255 #18 ENSDARG00000096721 #19 cd37 (ENSDARG00000075515) #20 gall (ENSDARG00000096760) #21 valopb (ENSDARG00000054181) #22 gabrz (ENSDARG00000094512) #23 ENSDARG00000054177 #24 ENSDARG00000074270 #25 mxtx2 (ENSDARG00000015906) #26 bms1 (ENSDARG00000054154) #27 SH2D4B (ENSDARG00000015144) #28 ENSDARG00000089766 #29 gfra1b (ENSDARG00000102564) #30 ATRNL1 (ENSDARG00000006420) #31 trub1 (ENSDARG00000053805) #32 ablim1b (ENSDARG00000045064) #33 ENSDARG00000116484 AFAP1L2 (ENSDARG00000074806) #34 VWA2 (ENSDARG00000075441) tdrd1 (ENSDARG00000007465) #36 Clupeiformes ANCESTRAL SPECIES 157 ENSGT00390000015226.d ENSGT00940000161547 ENSGT01030000234549.a.b #22 ENSGT00570000079216 ENSGT00940000164278 #23 ENSGT00940000160175.b ##24 ENSGT00390000011408 ENSGT00940000165215.a ENSGT00940000165215.b ENSGT00940000164759 ENSGT00940000158584 ENSGT00940000177920 ENSGT00940000155715 ENSGT00940000160595.a.a ##25 ENSGT00940000156981 ENSGT00940000157500 ENSGT00940000158949 ENSGT00390000009948.c Atlantic herring MODERN SPECIES 15 ENSCHAG00000027058 ENSCHAG00000027054 ENSCHAG00000027052 tmem184ba (ENSCHAG00000027045) maff (ENSCHAG00000027042) tomm22 (ENSCHAG00000027039) dmc1 (ENSCHAG00000027038) RNF40 (ENSCHAG00000027002) #14 ENSCHAG00000026985 #15 ENSCHAG00000026984 #17 znf668 (ENSCHAG00000026982) #16 ENSCHAG00000026981 #18 ENSCHAG00000026979 cd37 (ENSCHAG00000026977) #20 ENSCHAG00000026975 valopb (ENSCHAG00000026974) #22 gabrz (ENSCHAG00000026971) #23 ENSCHAG00000026967 #24 ENSCHAG00000026966 #25 mxtx2 (ENSCHAG00000026963) #26 bms1 (ENSCHAG00000026848) #27 SH2D4B (ENSCHAG00000026820) #28 ENSCHAG00000026816 #29 gfra1b (ENSCHAG00000026811) #30 ATRNL1 (ENSCHAG00000026533) #31 trub1 (ENSCHAG00000026495) #32 ablim1b (ENSCHAG00000026310) #33 ENSCHAG00000026285 #35 KBTBD13 (ENSCHAG00000026283) #35 KBTBD13 (ENSCHAG00000026278) #35 AFAP1L2 (ENSCHAG00000026268) #34 Denticle herring DUPLICATION Denticle herring MODERN SPECIES 18 ENSDCDG00000017672 #15 ENSDCDG00000017666 RNF40 (ENSDCDG00000017645) #14 dmc1 (ENSDCDG00000017615) tomm22 (ENSDCDG00000017610) maff (ENSDCDG00000017606) tmem184ba (ENSDCDG00000017470) ENSDCDG00000017455 HABP2 (ENSDCDG00000017302) fam204a (ENSDCDG00000017298) RAB11FIP2 (ENSDCDG00000017294) emx2 (ENSDCDG00000017291) INPP5A (ENSDCDG00000017218) nkx6.2 (ENSDCDG00000017201) nkx6.2 (ENSDCDG00000017196) valopa (ENSDCDG00000017194) #22 ENSDCDG00000017191 ENSDCDG00000017189 ENSDCDG00000017186 #23 ADGRA1 (ENSDCDG00000017182) ##24 KNDC1 (ENSDCDG00000017176) vox (ENSDCDG00000017174) ENSDCDG00000017171 ENSDCDG00000017169 dntt (ENSDCDG00000017161) ENSDCDG00000017148 gpatch11 (ENSDCDG00000017143) HEATR5B (ENSDCDG00000007821) STRN (ENSDCDG00000004699) PLD5 (ENSDCDG00000004612) cfap36 (ENSDCDG00000004605) Denticle herring MODERN SPECIES 18 emx2 (ENSDCDG00000017291) RAB11FIP2 (ENSDCDG00000017294) fam204a (ENSDCDG00000017298) HABP2 (ENSDCDG00000017302) ENSDCDG00000017455 tmem184ba (ENSDCDG00000017470) maff (ENSDCDG00000017606) tomm22 (ENSDCDG00000017610) dmc1 (ENSDCDG00000017615) RNF40 (ENSDCDG00000017645) #14 ENSDCDG00000017666 ENSDCDG00000017672 #15 ENSDCDG00000017680 #15 znf668 (ENSDCDG00000017687) #16 gall (ENSDCDG00000017693) #21 valopb (ENSDCDG00000017697) #22 gabrz (ENSDCDG00000017702) #23 ENSDCDG00000017708 #24 ENSDCDG00000017713 #25 mxtx2 (ENSDCDG00000017715) #26 bms1 (ENSDCDG00000017724) #27 ENSDCDG00000017779 #28 ENSDCDG00000017783 gfra1b (ENSDCDG00000017787) #30 ATRNL1 (ENSDCDG00000017855) #31 trub1 (ENSDCDG00000018865) #32 zgc:56095 (ENSDCDG00000018868) syt5b (ENSDCDG00000018869) cavin1b (ENSDCDG00000018871) atp6v0a1b (ENSDCDG00000018892) NAGLU (ENSDCDG00000019450) Euteleosteomorpha ANCESTRAL SPECIES 33 ENSGT00940000167263 ENSGT00940000158638 ENSGT00940000154141.B ENSGT00940000165391 ENSGT00940000164285.a ENSGT00390000013481.c.b.b ENSGT00940000155970 ENSGT00940000154537.lb ##26 ENSGT00390000016042 ENSGT00600000084626 ENSGT00940000160573 ENSGT00390000007203 ENSGT00940000160735 ENSGT00390000015226.d ENSGT00940000161547 ENSGT01030000234549.a.b #22 ENSGT00570000079216 ENSGT00940000164278 #23 ENSGT00940000160175.b ##24 ENSGT00390000011408 ENSGT00940000165215.a ENSGT00940000165215.b ENSGT00940000164759 ENSGT00940000158584 ENSGT00940000177920 ENSGT00940000155715 ENSGT00940000160595.a.a ##25 ENSGT00940000156981 ENSGT00940000156590 ENSGT00940000157500 ENSGT00940000158949 Acanthomorphata ANCESTRAL SPECIES 45 ENSGT00940000167263 ENSGT00940000158638 ENSGT00940000154141.B ENSGT00940000165391 ENSGT00940000164285.a ENSGT00390000013481.c.b.b ENSGT00940000155970 ENSGT00940000154537.lb ##26 ENSGT00390000016042 ENSGT00600000084626 ENSGT00940000160573 ENSGT00390000007203 ENSGT00940000160735 ENSGT00390000015226.d ENSGT00940000161547 ENSGT01030000234549.a.b #22 ENSGT00570000079216 ENSGT00940000164278 #23 ENSGT00940000160175.b ##24 ENSGT00390000011408 ENSGT00940000165215.a ENSGT00940000165215.b ENSGT00940000164759 ENSGT00940000158584 ENSGT00940000177920 ENSGT00940000155715 ENSGT00940000160595.a.a ##25 ENSGT00940000156981 ENSGT00940000157500 ENSGT00940000158949 ENSGT00390000009948.c Euacanthomorphacea ANCESTRAL SPECIES 32 ENSGT00940000167263 ENSGT00940000158638 ENSGT00940000154141.B ENSGT00940000165391 ENSGT00940000164285.a ENSGT00390000013481.c.b.b ENSGT00940000155970 ENSGT00940000154537.lb ##26 ENSGT00390000016042 ENSGT00600000084626 ENSGT00940000160573 ENSGT00390000007203 ENSGT00940000160735 ENSGT00390000015226.d ENSGT00940000161547 ENSGT01030000234549.a.b #22 ENSGT00570000079216 ENSGT00940000164278 #23 ENSGT00940000160175.b ##24 ENSGT00390000011408 ENSGT00940000165215.a ENSGT00940000165215.b ENSGT00940000164759 ENSGT00940000158584 ENSGT00940000177920 ENSGT00940000155715 ENSGT00940000160595.a.a ##25 ENSGT00940000156981 ENSGT00940000157500 ENSGT00940000158949 ENSGT00390000009948.c Percomorphaceae ANCESTRAL SPECIES 30 ENSGT00940000167263 ENSGT00940000158638 ENSGT00940000154141.B ENSGT00940000165391 ENSGT00940000164285.a ENSGT00390000013481.c.b.b ENSGT00940000155970 ENSGT00940000154537.lb ##26 ENSGT00390000016042 ENSGT00600000084626 ENSGT00940000160573 ENSGT00390000007203 ENSGT00940000160735 ENSGT00390000015226.d ENSGT00940000161547 ENSGT01030000234549.a.b #22 ENSGT00570000079216 ENSGT00940000164278 #23 ENSGT00940000160175.b ##24 ENSGT00390000011408 ENSGT00940000165215.a ENSGT00940000165215.b ENSGT00940000164759 ENSGT00940000158584 ENSGT00940000177920 ENSGT00940000155715 ENSGT00940000160595.a.a ##25 ENSGT00940000156981 ENSGT00940000157500 ENSGT00940000158949 ENSGT00390000009948.c Tiger tail seahorse MODERN SPECIES 312 ENSHCOG00000006353 TTC7A (ENSHCOG00000006324) ENSHCOG00000006192 haao (ENSHCOG00000006185) ENSHCOG00000006175 socs5b (ENSHCOG00000006168) ENSHCOG00000006164 rhoq (ENSHCOG00000006151) mxtx1 (ENSHCOG00000006137) ##26 ENSHCOG00000006124 ENSHCOG00000006113 STK32C (ENSHCOG00000006092) PWWP2B (ENSHCOG00000006074) INPP5A (ENSHCOG00000006054) nkx6.2 (ENSHCOG00000006009) valopa (ENSHCOG00000005999) #22 ENSHCOG00000005988 ENSHCOG00000005951 #23 ADGRA1 (ENSHCOG00000005931) ##24 ENSHCOG00000005916 vox (ENSHCOG00000005907) ENSHCOG00000005890 dntt (ENSHCOG00000005887) ENSHCOG00000005860 ENSHCOG00000005851 ##25 CCNJ (ENSHCOG00000005843) BTAF1 (ENSHCOG00000005812) cpeb3 (ENSHCOG00000005747) marchf5 (ENSHCOG00000005713) ENSHCOG00000005693 ide (ENSHCOG00000005681) Percomorphaceae_B ANCESTRAL SPECIES 24 ENSGT00940000167263 ENSGT00940000158638 ENSGT00940000154141.B ENSGT00940000165391 ENSGT00940000164285.a ENSGT00390000013481.c.b.b.d ENSGT00940000155970 ENSGT00940000154537.lb ##26 ENSGT00390000016042 ENSGT00600000084626 ENSGT00940000160573 ENSGT00390000007203 ENSGT00940000160735 ENSGT00390000015226.d ENSGT00940000161547 ENSGT01030000234549.a.b #22 ENSGT00570000079216 ENSGT00940000164278 #23 ENSGT00940000160175.b ##24 ENSGT00390000011408 ENSGT00940000165215.a ENSGT00940000165215.b ENSGT00940000164759 ENSGT00940000158584 ENSGT00940000177920 ENSGT00940000155715 ENSGT00940000160595.a.a ##25 ENSGT00940000156981 ENSGT00940000157500 ENSGT00940000158949 ENSGT00390000009948.c Percomorphaceae_C ANCESTRAL SPECIES 18 ENSGT00940000167263 ENSGT00940000158638 ENSGT00940000154141.B ENSGT00940000165391 ENSGT00940000164285.a ENSGT00390000013481.c.b.b.d ENSGT00940000155970 ENSGT00940000154537.lb ##26 ENSGT00390000016042 ENSGT00600000084626 ENSGT00940000160573 ENSGT00390000007203 ENSGT00940000160735 ENSGT00390000015226.d ENSGT00940000161547 ENSGT01030000234549.a.b #22 ENSGT00570000079216 ENSGT00940000164278 #23 ENSGT00940000160175.b ##24 ENSGT00390000011408 ENSGT00940000165215.a ENSGT00940000165215.b ENSGT00940000164759 ENSGT00940000158584 ENSGT00940000177920 ENSGT00940000155715 ENSGT00940000160595.a.a ##25 ENSGT00940000156981 ENSGT00940000157500 ENSGT00940000158949 ENSGT00390000009948.c Eupercaria ANCESTRAL SPECIES 15 ENSGT00940000167263 ENSGT00940000158638 ENSGT00940000154141.B ENSGT00940000165391 ENSGT00940000164285.a ENSGT00390000013481.c.b.b.d ENSGT00940000155970 ENSGT00940000154537.lb ##26 ENSGT00390000016042 ENSGT00600000084626 ENSGT00940000160573 ENSGT00390000007203 ENSGT00940000160735 ENSGT00390000015226.d ENSGT00940000161547 ENSGT01030000234549.a.b #22 ENSGT00570000079216 ENSGT00940000164278 #23 ENSGT00940000160175.b ##24 ENSGT00390000011408 ENSGT00940000165215.a ENSGT00940000165215.b ENSGT00940000164759 ENSGT00940000158584 ENSGT00940000155715 ENSGT00940000160595.a.a ##25 ENSGT00940000156981 ENSGT00940000157500 ENSGT00940000158949 ENSGT00390000009948.c ENSGT00940000155780 Tetraodontidae ANCESTRAL SPECIES 48 ENSGT00950000182980.a.b.b.b ENSGT00990000206002 ENSGT00940000158638 ENSGT00940000154141.B ENSGT00940000165391 ENSGT00940000164285.a ENSGT00940000155970 ENSGT00940000154537.lb ##26 ENSGT00390000016042 ENSGT00600000084626 ENSGT00940000160573 ENSGT00390000007203 ENSGT00940000160735 ENSGT00390000015226.d ENSGT00940000161547 ENSGT01030000234549.a.b #22 ENSGT00570000079216 ENSGT00940000164278 #23 ENSGT00940000160175.b ##24 ENSGT00390000011408 ENSGT00940000165215.a ENSGT00940000164759 ENSGT00940000158584 ENSGT00940000155715 ENSGT00940000160595.a.a ##25 ENSGT00940000156981 ENSGT00940000157500 ENSGT00940000158949 ENSGT00390000009948.c ENSGT00940000155780 ENSGT00390000000747 Fugu MODERN SPECIES 16 ENSTRUG00000024614 ENSTRUG00000023610 TTC7A (ENSTRUG00000008737) mcfd2 (ENSTRUG00000009161) ENSTRUG00000009191 socs5b (ENSTRUG00000022095) rhoq (ENSTRUG00000024700) mxtx1 (ENSTRUG00000009443) ##26 ENSTRUG00000029306 ENSTRUG00000009534 STK32C (ENSTRUG00000033196) ENSTRUG00000032270 PWWP2B (ENSTRUG00000009585) INPP5A (ENSTRUG00000009619) nkx6.2 (ENSTRUG00000010013) valopa (ENSTRUG00000010077) #22 ENSTRUG00000030286 ENSTRUG00000031713 #23 ADGRA1 (ENSTRUG00000010484) ##24 ENSTRUG00000031127 vox (ENSTRUG00000010857) ENSTRUG00000010892 ENSTRUG00000031503 ENSTRUG00000028209 dntt (ENSTRUG00000010905) ENSTRUG00000028294 ENSTRUG00000021277 ##25 CCNJ (ENSTRUG00000011249) BTAF1 (ENSTRUG00000005368) cpeb3 (ENSTRUG00000011309) marchf5 (ENSTRUG00000027284) Tetraodon MODERN SPECIES 26 calm2a (ENSTNIG00000017098) ENSTNIG00000000458 ENSTNIG00000017097 mcfd2 (ENSTNIG00000017096) ENSTNIG00000017095 socs5b (ENSTNIG00000017094) rhoq (ENSTNIG00000017093) mxtx1 (ENSTNIG00000017092) ##26 tmem254 (ENSTNIG00000017091) ENSTNIG00000017090 STK32C (ENSTNIG00000017089) ENSTNIG00000000261 PWWP2B (ENSTNIG00000017088) INPP5A (ENSTNIG00000017087) nkx6.2 (ENSTNIG00000017086) valopa (ENSTNIG00000017085) #22 ENSTNIG00000000187 ENSTNIG00000017084 #23 ENSTNIG00000017083 ADGRA1 (ENSTNIG00000017082) ##24 KNDC1 (ENSTNIG00000017081) vox (ENSTNIG00000001621) ENSTNIG00000017080 ENSTNIG00000017079 dntt (ENSTNIG00000017078) blnk (ENSTNIG00000001501) tiprl (ENSTNIG00000014243) PPP1R14A (ENSTNIG00000014242) ENSTNIG00000014241 tfap2b (ENSTNIG00000014240) tfap2b (ENSTNIG00000014239) Eupecaria_A ANCESTRAL SPECIES 26 ENSGT00940000167263 ENSGT00940000158638 ENSGT00940000154141.B ENSGT00940000165391 ENSGT00940000164285.a ENSGT00390000013481.c.b.b.d ENSGT00940000155970 ENSGT00940000154537.lb ##26 ENSGT00390000016042 ENSGT00600000084626 ENSGT00940000160573 ENSGT00390000007203 ENSGT00940000160735 ENSGT00390000015226.d ENSGT00940000161547 ENSGT01030000234549.a.b #22 ENSGT00570000079216 ENSGT00940000164278 #23 ENSGT00940000160175.b ##24 ENSGT00390000011408 ENSGT00940000165215.a ENSGT00940000165215.b ENSGT00940000164759 ENSGT00940000158584 ENSGT00940000155715 ENSGT00940000160595.a.a ##25 ENSGT00940000156981 ENSGT00940000157500 ENSGT00940000158949 ENSGT00390000009948.c ENSGT00940000155780 Ballan wrasse MODERN SPECIES 161 si:ch211-93n23.7 (ENSLBEG00000010293) TTC7A (ENSLBEG00000009868) mcfd2 (ENSLBEG00000009660) PROP1 (ENSLBEG00000009650) socs5b (ENSLBEG00000009632) rhoq (ENSLBEG00000009597) mxtx1 (ENSLBEG00000009575) ##26 tmem254 (ENSLBEG00000009547) ENSLBEG00000009458 STK32C (ENSLBEG00000009387) ENSLBEG00000009354 ENSLBEG00000009335 PWWP2B (ENSLBEG00000009309) INPP5A (ENSLBEG00000009250) nkx6.2 (ENSLBEG00000009205) valopa (ENSLBEG00000009165) #22 ENSLBEG00000009108 ENSLBEG00000009064 #23 Eupecaria_B ANCESTRAL SPECIES 26 ENSGT00940000167263 ENSGT00940000158638 ENSGT00940000154141.B ENSGT00940000165391 ENSGT00940000164285.a ENSGT00390000013481.c.b.b.d ENSGT00940000155970 ENSGT00940000154537.lb ##26 ENSGT00390000016042 ENSGT00600000084626 ENSGT00940000160573 ENSGT00390000007203 ENSGT00940000160735 ENSGT00390000015226.d ENSGT00940000161547 ENSGT01030000234549.a.b #22 ENSGT00570000079216 ENSGT00940000164278 #23 ENSGT00940000160175.b ##24 ENSGT00390000011408 ENSGT00940000165215.a ENSGT00940000165215.b ENSGT00940000164759 ENSGT00940000158584 ENSGT00940000155715 ENSGT00940000160595.a.a ##25 ENSGT00940000156981 ENSGT00940000157500 ENSGT00940000158949 ENSGT00390000009948.c ENSGT00940000155780 Eupecaria_C ANCESTRAL SPECIES 28 ENSGT00940000167263 ENSGT00940000158638 ENSGT00940000154141.B ENSGT00940000162292 ENSGT00940000164285.a ENSGT00390000013481.c.b.b.d ENSGT00940000155970 ENSGT00940000154537.lb ##26 ENSGT00390000016042 ENSGT00600000084626 ENSGT00940000160573 ENSGT00390000007203 ENSGT00940000160735 ENSGT00390000015226.d ENSGT00940000161547 ENSGT01030000234549.a.b #22 ENSGT00570000079216 ENSGT00940000164278 #23 ENSGT00940000160175.b ##24 ENSGT00390000011408 ENSGT00940000165215.a ENSGT00940000165215.b ENSGT00940000164759 ENSGT00940000158584 ENSGT00940000155715 ENSGT00940000160595.a.a ##25 ENSGT00940000156981 ENSGT00940000157500 ENSGT00940000158949 ENSGT00390000009948.c ENSGT00940000155780 Gilthead seabream MODERN SPECIES 6 TTC7A (ENSSAUG00010009599) mcfd2 (ENSSAUG00010009594) ENSSAUG00010009593 socs5b (ENSSAUG00010009591) ENSSAUG00010009589 rhoq (ENSSAUG00010009587) mxtx1 (ENSSAUG00010009584) ##26 ENSSAUG00010009582 ENSSAUG00010009574 STK32C (ENSSAUG00010008986) LRRC27 (ENSSAUG00010008974) PWWP2B (ENSSAUG00010008973) INPP5A (ENSSAUG00010008928) nkx6.2 (ENSSAUG00010008921) ENSSAUG00010008918 valopa (ENSSAUG00010008916) #22 ENSSAUG00010008913 ENSSAUG00010008909 ENSSAUG00010008899 #23 ADGRA1 (ENSSAUG00010008894) ##24 KNDC1 (ENSSAUG00010008882) vox (ENSSAUG00010008879) ENSSAUG00010008878 ENSSAUG00010008875 dntt (ENSSAUG00010008857) blnk (ENSSAUG00010008848) ENSSAUG00010008845 ##25 CCNJ (ENSSAUG00010008843) BTAF1 (ENSSAUG00010004978) cpeb3 (ENSSAUG00010004913) marchf5 (ENSSAUG00010004891) Eupercaria_incertae_sedis ANCESTRAL SPECIES 32 ENSGT00940000167263 ENSGT00940000158638 ENSGT00940000154141.B ENSGT00940000162292 ENSGT00940000164285.a ENSGT00390000013481.c.b.b.d ENSGT00940000155970 ENSGT00940000154537.lb ##26 ENSGT00390000016042 ENSGT00600000084626 ENSGT00940000160573 ENSGT00940000170679 ENSGT00940000160735 ENSGT00390000015226.d ENSGT00940000161547 ENSGT01030000234549.a.b #22 ENSGT00570000079216 ENSGT00940000164278 #23 ENSGT00940000160175.b ##24 ENSGT00390000011408 ENSGT00940000165215.a ENSGT00940000165215.b ENSGT00940000164759 ENSGT00940000158584 ENSGT00940000155715 ENSGT00940000160595.a.a ##25 ENSGT00940000156981 ENSGT00940000157500 ENSGT00940000158949 ENSGT00390000009948.c ENSGT00940000155780 European seabass MODERN SPECIES 1 si:ch211-93n23.7 (ENSDLAG00005029780) TTC7A (ENSDLAG00005009409) mcfd2 (ENSDLAG00005026903) ENSDLAG00005009428 socs5b (ENSDLAG00005032498) ENSDLAG00005009438 ENSDLAG00005009441 ENSDLAG00005009445 ##26 ENSDLAG00005009450 ENSDLAG00005009455 STK32C (ENSDLAG00005009501) ENSDLAG00005010271 PWWP2B (ENSDLAG00005010295) INPP5A (ENSDLAG00005029925) nkx6.2 (ENSDLAG00005010508) valopa (ENSDLAG00005010514) #22 CFAP46 (ENSDLAG00005010550) ENSDLAG00005030523 #23 ADGRA1 (ENSDLAG00005010601) ##24 KNDC1 (ENSDLAG00005010811) vox (ENSDLAG00005010862) ENSDLAG00005032121 ENSDLAG00005033621 dntt (ENSDLAG00005010884) blnk (ENSDLAG00005011223) ENSDLAG00005011261 ##25 ENSDLAG00005011266 BTAF1 (ENSDLAG00005011308) cpeb3 (ENSDLAG00005031540) IDE (ENSDLAG00005012101) marchf5 (ENSDLAG00005012046) Large yellow croaker MODERN SPECIES 2 TTC7A (ENSLCRG00005008446) ENSLCRG00005008452 mcfd2 (ENSLCRG00005008454) ENSLCRG00005008455 socs5b (ENSLCRG00005008456) ENSLCRG00005008457 rhoq (ENSLCRG00005008460) mxtx1 (ENSLCRG00005008465) ##26 tmem254 (ENSLCRG00005008467) ENSLCRG00005008469 STK32C (ENSLCRG00005008477) ENSLCRG00005008493 PWWP2B (ENSLCRG00005008494) INPP5A (ENSLCRG00005008504) nkx6.2 (ENSLCRG00005008864) valopa (ENSLCRG00005008865) #22 ENSLCRG00005008866 ENSLCRG00005008867 ENSLCRG00005008868 #23 ADGRA1 (ENSLCRG00005008872) ##24 KNDC1 (ENSLCRG00005009137) vox (ENSLCRG00005009145) ENSLCRG00005009147 ENSLCRG00005009148 dntt (ENSLCRG00005009153) blnk (ENSLCRG00005009158) ENSLCRG00005009170 ##25 CCNJ (ENSLCRG00005000078) BTAF1 (ENSLCRG00005000304) cpeb3 (ENSLCRG00005003544) marchf5 (ENSLCRG00005003726) Perciformes ANCESTRAL SPECIES 17 ENSGT00950000182980.a.b.b.b ENSGT00990000206002 ENSGT00940000158638 ENSGT00940000154141.B ENSGT00940000165391 ENSGT00940000164285.a ENSGT00940000155970 ENSGT00940000154537.lb ##26 ENSGT00390000016042 ENSGT00600000084626 ENSGT00940000160573 ENSGT00390000007203 ENSGT00940000160735 ENSGT00390000015226.d ENSGT00940000161547 ENSGT01030000234549.a.b #22 ENSGT00570000079216 ENSGT00940000164278 #23 ENSGT00940000160175.b ##24 ENSGT00390000011408 ENSGT00940000165215.a ENSGT00940000165215.b ENSGT00940000164759 ENSGT00940000158584 ENSGT00940000155715 ENSGT00940000160595.a.a ##25 ENSGT00940000156981 ENSGT00940000157500 ENSGT00940000158949 ENSGT00390000009948.c ENSGT00940000155780 Cottioidei ANCESTRAL SPECIES 36 ENSGT00600000084626 ENSGT00940000160573 ENSGT00390000007203 ENSGT00940000160735 ENSGT00390000015226.d ENSGT00940000161547 ENSGT01030000234549.a.b #22 ENSGT00570000079216 ENSGT00940000164278 #23 ENSGT00940000160175.b ##24 ENSGT00390000011408 ENSGT00940000165215.a ENSGT00940000165215.b ENSGT00940000164759 ENSGT00940000158584 ENSGT00940000155715 ENSGT00940000156981 ENSGT00940000157500 ENSGT00940000158949 ENSGT00390000009948.c ENSGT00940000155780 ENSGT00390000000747 Lumpfish MODERN SPECIES 6 eif3s6ip (ENSCLMG00005021658) SMOC2 (ENSCLMG00005021800) dact2 (ENSCLMG00005021801) lrrfip2 (ENSCLMG00005021816) mlh1 (ENSCLMG00005021832) ENSCLMG00005021838 ENSCLMG00005021841 HERC4 (ENSCLMG00005021848) cox5b2 (ENSCLMG00005021881) ENSCLMG00005021882 STK32C (ENSCLMG00005021884) LRRC27 (ENSCLMG00005021945) PWWP2B (ENSCLMG00005021947) INPP5A (ENSCLMG00005021958) nkx6.2 (ENSCLMG00005021971) valopa (ENSCLMG00005021972) #22 ENSCLMG00005021973 ENSCLMG00005021974 ENSCLMG00005021975 #23 ADGRA1 (ENSCLMG00005021978) ##24 ENSCLMG00005022000 ENSCLMG00005022004 vox (ENSCLMG00005022005) ENSCLMG00005022007 dntt (ENSCLMG00005022012) ENSCLMG00005022078 CCNJ (ENSCLMG00005022079) BTAF1 (ENSCLMG00005022092) cpeb3 (ENSCLMG00005022098) marchf5 (ENSCLMG00005022111) ide (ENSCLMG00005022120) Stickleback MODERN SPECIES 6 haao (ENSGACG00000002666) papolg (ENSGACG00000002718) ENSGACG00000002730 pex13 (ENSGACG00000002732) SANBR (ENSGACG00000002736) XPO1 (ENSGACG00000002743) pcgf6 (ENSGACG00000002779) inaa (ENSGACG00000002787) ENSGACG00000002791 STK32C (ENSGACG00000002804) ENSGACG00000002807 ENSGACG00000002810 PWWP2B (ENSGACG00000002816) INPP5A (ENSGACG00000002820) nkx6.2 (ENSGACG00000002824) valopa (ENSGACG00000002828) #22 ENSGACG00000002833 ENSGACG00000002838 ENSGACG00000002843 #23 ADGRA1 (ENSGACG00000002848) ##24 ENSGACG00000002851 ENSGACG00000002854 vox (ENSGACG00000002870) ENSGACG00000002875 ENSGACG00000002877 dntt (ENSGACG00000002880) blnk (ENSGACG00000002905) CCNJ (ENSGACG00000002931) BTAF1 (ENSGACG00000002936) cpeb3 (ENSGACG00000002944) marchf5 (ENSGACG00000002949) Perciformes_a ANCESTRAL SPECIES 40 ENSGT00950000182980.a.b.b.b ENSGT00990000206002 ENSGT00940000158638 ENSGT00940000154141.B ENSGT00940000165391 ENSGT00940000164285.a ENSGT00940000155970 ENSGT00940000154537.lb ##26 ENSGT00390000016042 ENSGT00600000084626 ENSGT00940000160573 ENSGT00390000007203 ENSGT00940000160735 ENSGT00390000015226.d ENSGT00940000161547 ENSGT01030000234549.a.b #22 ENSGT00570000079216 ENSGT00940000164278 #23 ENSGT00940000160175.b ##24 ENSGT00390000011408 ENSGT00940000165215.a ENSGT00940000165215.b ENSGT00940000164759 ENSGT00940000158584 ENSGT00940000155715 ENSGT00940000160595.a.a ##25 ENSGT00940000156981 ENSGT00940000157500 ENSGT00940000158949 ENSGT00390000009948.c ENSGT00940000155780 Pike perch MODERN SPECIES 62 calm2a (ENSSLUG00000006958) ENSSLUG00000006966 TTC7A (ENSSLUG00000006976) mcfd2 (ENSSLUG00000007002) ENSSLUG00000007008 socs5b (ENSSLUG00000007028) rhoq (ENSSLUG00000007036) mxtx1 (ENSSLUG00000007046) ##26 ENSSLUG00000007058 ENSSLUG00000007070 STK32C (ENSSLUG00000007119) ENSSLUG00000007193 PWWP2B (ENSSLUG00000007199) INPP5A (ENSSLUG00000007233) nkx6.2 (ENSSLUG00000007911) valopa (ENSSLUG00000007918) #22 ENSSLUG00000007934 ENSSLUG00000007938 ENSSLUG00000007942 ENSSLUG00000007949 #23 ADGRA1 (ENSSLUG00000007973) ##24 Channel bull blenny MODERN SPECIES 6 calm2a (ENSCGOG00000009161) TTC7A (ENSCGOG00000009140) mcfd2 (ENSCGOG00000009135) ENSCGOG00000009126 socs5b (ENSCGOG00000009122) ENSCGOG00000009112 rhoq (ENSCGOG00000009097) mxtx1 (ENSCGOG00000009094) ##26 ENSCGOG00000009091 ENSCGOG00000009085 STK32C (ENSCGOG00000008934) ENSCGOG00000008926 PWWP2B (ENSCGOG00000008924) INPP5A (ENSCGOG00000008304) nkx6.2 (ENSCGOG00000008283) valopa (ENSCGOG00000008270) #22 CFAP46 (ENSCGOG00000008262) ENSCGOG00000008256 ENSCGOG00000008249 #23 ENSCGOG00000008239 ENSCGOG00000008231 ADGRA1 (ENSCGOG00000008223) ##24 KNDC1 (ENSCGOG00000008214) vox (ENSCGOG00000008212) ENSCGOG00000008208 ENSCGOG00000008206 dntt (ENSCGOG00000008120) blnk (ENSCGOG00000008100) ENSCGOG00000008096 ##25 CCNJ (ENSCGOG00000008091) BTAF1 (ENSCGOG00000007499) Percomorphaceae_D ANCESTRAL SPECIES 19 ENSGT00940000167263 ENSGT00940000158638 ENSGT00940000154141.B ENSGT00940000165391 ENSGT00940000164285.a ENSGT00390000013481.c.b.b.d ENSGT00940000155970 ENSGT00940000154537.lb ##26 ENSGT00390000016042 ENSGT00600000084626 ENSGT00940000160573 ENSGT00940000170679 ENSGT00940000160735 ENSGT00390000015226.d ENSGT00940000161547 ENSGT01030000234549.a.b #22 ENSGT00570000079216 ENSGT00940000164278 #23 ENSGT00940000160175.b ##24 ENSGT00390000011408 ENSGT00940000165215.a ENSGT00940000165215.b ENSGT00940000164759 ENSGT00940000158584 ENSGT00940000177920 ENSGT00940000155715 ENSGT00940000160595.a.a ##25 ENSGT00940000156981 ENSGT00940000157500 ENSGT00940000158949 ENSGT00390000009948.c Anabantaria ANCESTRAL SPECIES 17 ENSGT00950000182980.a.b.b.b ENSGT00940000167263 ENSGT00940000158638 ENSGT00940000154141.B ENSGT00940000162292 ENSGT00940000164285.a ENSGT00940000155970 ENSGT00940000154537.lb ##26 ENSGT00390000016042 ENSGT00600000084626 ENSGT00940000160573 ENSGT00940000170679 ENSGT00940000160735 ENSGT00390000015226.d ENSGT00940000161547 ENSGT01030000234549.a.b #22 ENSGT00570000079216 ENSGT00940000164278 #23 ENSGT00940000160175.b ##24 ENSGT00390000011408 ENSGT00940000165215.a ENSGT00940000165215.b ENSGT00940000164759 ENSGT00940000158584 ENSGT00940000155715 ENSGT00940000160595.a.a ##25 ENSGT00940000156981 ENSGT00940000157500 ENSGT00940000158949 ENSGT00390000009948.c ENSGT00940000155780 Anabantoidei ANCESTRAL SPECIES 17 ENSGT00950000182980.a.b.b.b ENSGT00940000167263 ENSGT00940000158638 ENSGT00940000154141.B ENSGT00940000162292 ENSGT00940000164285.a ENSGT00940000155970 ENSGT00940000154537.lb ##26 ENSGT00390000016042 ENSGT00600000084626 ENSGT00940000160573 ENSGT00940000170679 ENSGT00940000160735 ENSGT00390000015226.d ENSGT00940000161547 ENSGT01030000234549.a.b #22 ENSGT00570000079216 ENSGT00940000164278 #23 ENSGT00940000160175.b ##24 ENSGT00390000011408 ENSGT00940000165215.a ENSGT00940000164759 ENSGT00940000158584 ENSGT00940000155715 ENSGT00940000160595.a.a ##25 ENSGT00940000156981 ENSGT00940000157500 ENSGT00940000158949 ENSGT00390000009948.c ENSGT00940000155780 ENSGT00390000000747 Climbing perch MODERN SPECIES 6 si:ch211-93n23.7 (ENSATEG00000009420) TTC7A (ENSATEG00000009434) mcfd2 (ENSATEG00000009468) ENSATEG00000009486 socs5b (ENSATEG00000009505) ENSATEG00000009510 ENSATEG00000009520 ##26 ENSATEG00000009533 ENSATEG00000009538 ENSATEG00000009581 STK32C (ENSATEG00000009593) ENSATEG00000009604 PWWP2B (ENSATEG00000009620) INPP5A (ENSATEG00000009627) nkx6.2 (ENSATEG00000028200) valopa (ENSATEG00000009727) #22 ENSATEG00000010016 ENSATEG00000010081 #23 ADGRA1 (ENSATEG00000010152) ##24 ENSATEG00000025346 ENSATEG00000028993 vox (ENSATEG00000028903) ENSATEG00000010339 dntt (ENSATEG00000010373) blnk (ENSATEG00000010409) ENSATEG00000010449 ##25 ENSATEG00000010453 BTAF1 (ENSATEG00000010510) cpeb3 (ENSATEG00000010649) marchf5 (ENSATEG00000010690) ENSATEG00000025422 Siamese fighting fish MODERN SPECIES 6 ENSBSLG00000021077 calm2a (ENSBSLG00000021159) TTC7A (ENSBSLG00000021328) mcfd2 (ENSBSLG00000021690) ENSBSLG00000021713 socs5b (ENSBSLG00000021738) rhoq (ENSBSLG00000021750) mxtx1 (ENSBSLG00000021776) ##26 ENSBSLG00000021787 ENSBSLG00000021800 STK32C (ENSBSLG00000021835) ENSBSLG00000021937 PWWP2B (ENSBSLG00000021951) INPP5A (ENSBSLG00000021972) nkx6.2 (ENSBSLG00000022009) valopa (ENSBSLG00000022018) #22 ENSBSLG00000022061 ENSBSLG00000022194 ENSBSLG00000022199 ENSBSLG00000022203 #23 ENSBSLG00000022215 ##24 ENSBSLG00000022229 ENSBSLG00000022244 vox (ENSBSLG00000022246) vox (ENSBSLG00000022251) ENSBSLG00000002274 dntt (ENSBSLG00000002392) blnk (ENSBSLG00000002470) ENSBSLG00000002535 ##25 CCNJ (ENSBSLG00000002548) BTAF1 (ENSBSLG00000002717) Zig-zag eel DUPLICATION Zig-zag eel MODERN SPECIES 6 calm2a (ENSMAMG00000010998) si:ch211-93n23.7 (ENSMAMG00000011013) TTC7A (ENSMAMG00000011025) mcfd2 (ENSMAMG00000011042) ENSMAMG00000011055 socs5b (ENSMAMG00000011056) ENSMAMG00000027941 ENSMAMG00000011075 ##26 ENSMAMG00000011092 ENSMAMG00000011112 STK32C (ENSMAMG00000011136) ENSMAMG00000011167 PWWP2B (ENSMAMG00000011185) INPP5A (ENSMAMG00000011199) nkx6.2 (ENSMAMG00000026922) ENSMAMG00000011294 #22 ENSMAMG00000024517 ENSMAMG00000027819 ENSMAMG00000012497 ENSMAMG00000012514 #23 ENSMAMG00000012538 ENSMAMG00000012543 ADGRA1 (ENSMAMG00000012554) ##24 KNDC1 (ENSMAMG00000012563) vox (ENSMAMG00000012590) ENSMAMG00000026979 ENSMAMG00000012605 dntt (ENSMAMG00000012615) blnk (ENSMAMG00000012653) ENSMAMG00000012688 ##25 ENSMAMG00000012696 Zig-zag eel MODERN SPECIES 54 ENSMAMG00000018378 #22 Carangaria ANCESTRAL SPECIES 19 ENSGT00940000167263 ENSGT00940000158638 ENSGT00940000154141.B ENSGT00940000165391 ENSGT00940000164285.a ENSGT00390000013481.c.b.b.d ENSGT00940000155970 ENSGT00940000154537.lb ##26 ENSGT00390000016042 ENSGT00600000084626 ENSGT00940000160573 ENSGT00940000170679 ENSGT00940000160735 ENSGT00390000015226.d ENSGT00940000161547 ENSGT01030000234549.a.b #22 ENSGT00570000079216 ENSGT00940000164278 #23 ENSGT00940000160175.b ##24 ENSGT00390000011408 ENSGT00940000165215.a ENSGT00940000165215.b ENSGT00940000164759 ENSGT00940000158584 ENSGT00940000177920 ENSGT00940000155715 ENSGT00940000160595.a.a ##25 ENSGT00940000156981 ENSGT00940000157500 ENSGT00940000158949 ENSGT00390000009948.c Pleuronectoidei ANCESTRAL SPECIES 28 ENSGT00940000167711.a.b ENSGT00950000182980.a.b.b.b ENSGT00940000167263 ENSGT00940000158638 ENSGT00940000154141.B ENSGT00940000165391 ENSGT00940000164285.a ENSGT00940000155970 ENSGT00940000154537.lb ##26 ENSGT00390000016042 ENSGT00600000084626 ENSGT00940000160573 ENSGT00940000160735 ENSGT00390000015226.d ENSGT00940000161547 ENSGT01030000234549.a.b #22 ENSGT00570000079216 ENSGT00940000164278 #23 ENSGT00940000160175.b ##24 ENSGT00390000011408 ENSGT00940000165215.a ENSGT00940000164759 ENSGT00940000158584 ENSGT00940000155715 ENSGT00940000160595.a.a ##25 ENSGT00940000156981 ENSGT00940000157500 ENSGT00940000158949 ENSGT00390000009948.c ENSGT00940000155780 ENSGT00390000000747 Turbot MODERN SPECIES 6 ENSSMAG00000015375 ENSSMAG00000023870 ENSSMAG00000015338 ENSSMAG00000015262 mcfd2 (ENSSMAG00000026884) ENSSMAG00000015240 socs5b (ENSSMAG00000015236) ENSSMAG00000032665 ENSSMAG00000015185 ##26 ENSSMAG00000029523 ENSSMAG00000015139 STK32C (ENSSMAG00000015069) PWWP2B (ENSSMAG00000015035) INPP5A (ENSSMAG00000014975) nkx6.2 (ENSSMAG00000035901) valopa (ENSSMAG00000014945) #22 ENSSMAG00000014810 ENSSMAG00000014747 #23 ENSSMAG00000014683 ##24 KNDC1 (ENSSMAG00000014581) vox (ENSSMAG00000014574) ENSSMAG00000014568 dntt (ENSSMAG00000014542) blnk (ENSSMAG00000014278) ENSSMAG00000014259 ##25 ENSSMAG00000014232 BTAF1 (ENSSMAG00000014035) cpeb3 (ENSSMAG00000013924) marchf5 (ENSSMAG00000013888) ide (ENSSMAG00000013822) kmo (ENSSMAG00000013784) Tongue sole MODERN SPECIES 3 ikzf1 (ENSCSEG00000008620) vwc2 (ENSCSEG00000009963) MOCOS (ENSCSEG00000009978) zgc:110045 (ENSCSEG00000010020) si:ch211-117n7.7 (ENSCSEG00000010068) tm9sf3 (ENSCSEG00000010093) prdx3 (ENSCSEG00000010149) sfxn4 (ENSCSEG00000010159) dennd10 (ENSCSEG00000010175) vox (ENSCSEG00000010208) ENSCSEG00000010212 KNDC1 (ENSCSEG00000010219) ADGRA1 (ENSCSEG00000010321) ##24 ENSCSEG00000010432 #23 ENSCSEG00000010456 valopa (ENSCSEG00000010484) #22 nkx6.2 (ENSCSEG00000010490) INPP5A (ENSCSEG00000010496) PWWP2B (ENSCSEG00000010521) STK32C (ENSCSEG00000010530) ENSCSEG00000010547 tmem254 (ENSCSEG00000010559) mxtx1 (ENSCSEG00000010567) ##26 rhoq (ENSCSEG00000010572) socs5b (ENSCSEG00000010578) prorsd1 (ENSCSEG00000010585) usp54a (ENSCSEG00000010597) ENSCSEG00000010648 ENSCSEG00000010689 mad2l1bp (ENSCSEG00000010706) mgme1 (ENSCSEG00000010715) Carangaria_A ANCESTRAL SPECIES 31 ENSGT00940000167263 ENSGT00940000158638 ENSGT00940000154141.B ENSGT00940000165391 ENSGT00940000164285.a ENSGT00390000013481.c.b.b.d ENSGT00940000155970 ENSGT00940000154537.lb ##26 ENSGT00390000016042 ENSGT00600000084626 ENSGT00940000160573 ENSGT00940000170679 ENSGT00940000160735 ENSGT00390000015226.d ENSGT00940000161547 ENSGT01030000234549.a.b #22 ENSGT00570000079216 ENSGT00940000164278 #23 ENSGT00940000160175.b ##24 ENSGT00390000011408 ENSGT00940000165215.a ENSGT00940000165215.b ENSGT00940000164759 ENSGT00940000158584 ENSGT00940000177920 ENSGT00940000155715 ENSGT00940000160595.a.a ##25 ENSGT00940000156981 ENSGT00940000157500 ENSGT00940000158949 ENSGT00390000009948.c Seriola ANCESTRAL SPECIES 14 ENSGT00940000167263 ENSGT00940000158638 ENSGT00940000154141.B ENSGT00940000165391 ENSGT00940000164285.a ENSGT00390000013481.c.b.b.d ENSGT00940000155970 ENSGT00940000154537.lb ##26 ENSGT00390000016042 ENSGT00600000084626 ENSGT00940000160573 ENSGT00940000170679 ENSGT00940000160735 ENSGT00390000015226.d ENSGT00940000161547 ENSGT01030000234549.a.b #22 ENSGT00570000079216 ENSGT00940000164278 #23 ENSGT00940000160175.b ##24 ENSGT00390000011408 ENSGT00940000165215.a ENSGT00940000165215.b ENSGT00940000164759 ENSGT00940000158584 ENSGT00940000177920 ENSGT00940000155715 ENSGT00940000160595.a.a ##25 ENSGT00940000156981 ENSGT00940000157500 ENSGT00940000158949 ENSGT00390000009948.c Greater amberjack MODERN SPECIES 30 ENSSDUG00000000341 TTC7A (ENSSDUG00000000264) mcfd2 (ENSSDUG00000000233) ENSSDUG00000000218 socs5b (ENSSDUG00000000213) ENSSDUG00000000164 rhoq (ENSSDUG00000000093) mxtx1 (ENSSDUG00000020571) ##26 ENSSDUG00000020551 ENSSDUG00000020529 STK32C (ENSSDUG00000020492) ENSSDUG00000020451 PWWP2B (ENSSDUG00000020437) INPP5A (ENSSDUG00000020408) nkx6.2 (ENSSDUG00000020400) valopa (ENSSDUG00000020386) #22 ENSSDUG00000020270 ENSSDUG00000020219 #23 ADGRA1 (ENSSDUG00000020182) ##24 KNDC1 (ENSSDUG00000020142) vox (ENSSDUG00000020133) ENSSDUG00000020122 ENSSDUG00000020119 dntt (ENSSDUG00000019989) blnk (ENSSDUG00000019940) ENSSDUG00000019928 ##25 CCNJ (ENSSDUG00000019912) BTAF1 (ENSSDUG00000019837) cpeb3 (ENSSDUG00000019766) marchf5 (ENSSDUG00000019714) ide (ENSSDUG00000019622) Yellowtail amberjack MODERN SPECIES 3109 si:ch211-93n23.7 (ENSSLDG00000000731) TTC7A (ENSSLDG00000000654) mcfd2 (ENSSLDG00000000632) ENSSLDG00000000608 socs5b (ENSSLDG00000000598) ENSSLDG00000000354 rhoq (ENSSLDG00000000306) mxtx1 (ENSSLDG00000000243) ##26 ENSSLDG00000000212 ENSSLDG00000000123 STK32C (ENSSLDG00000021935) ENSSLDG00000021920 PWWP2B (ENSSLDG00000021915) INPP5A (ENSSLDG00000021836) nkx6.2 (ENSSLDG00000021824) valopa (ENSSLDG00000021805) #22 ENSSLDG00000021778 ENSSLDG00000021755 #23 ADGRA1 (ENSSLDG00000021741) ##24 ENSSLDG00000021735 vox (ENSSLDG00000021724) ENSSLDG00000021719 ENSSLDG00000021711 dntt (ENSSLDG00000021672) ENSSLDG00000021663 ENSSLDG00000021654 ENSSLDG00000021646 ##25 CCNJ (ENSSLDG00000021633) BTAF1 (ENSSLDG00000021505) cpeb3 (ENSSLDG00000021438) marchf5 (ENSSLDG00000021414) Barramundi perch DUPLICATION Barramundi perch MODERN SPECIES 412 valopa (ENSLCAG00010000719) #22 ENSLCAG00010000708 ENSLCAG00010000703 ENSLCAG00010000653 ENSLCAG00010000636 #23 ADGRA1 (ENSLCAG00010000600) ##24 ENSLCAG00010000577 Barramundi perch MODERN SPECIES 1789 ENSLCAG00010020082 #22 Ovalentaria ANCESTRAL SPECIES 18 ENSGT00950000182980.a.b.b.b ENSGT00940000167263 ENSGT00940000158638 ENSGT00940000154141.B ENSGT00940000165391 ENSGT00940000164285.a ENSGT00940000155970 ENSGT00940000154537.lb ##26 ENSGT00390000016042 ENSGT00600000084626 ENSGT00940000160573 ENSGT00390000007203 ENSGT00940000160735 ENSGT00390000015226.d ENSGT00940000161547 ENSGT01030000234549.a.b #22 ENSGT00570000079216 ENSGT00940000164278 #23 ENSGT00940000160175.b ##24 ENSGT00390000011408 ENSGT00940000165215.a ENSGT00940000165215.b ENSGT00940000164759 ENSGT00940000158584 ENSGT00940000177920 ENSGT00940000155715 ENSGT00940000160595.a.a ##25 ENSGT00940000156981 ENSGT00940000157500 ENSGT00940000158949 ENSGT00390000009948.c Atherinomorphae ANCESTRAL SPECIES 16 ENSGT00730000110943.B.c ENSGT00950000182980.a.b.b.b ENSGT00940000158638 ENSGT00940000154141.B ENSGT00940000165391 ENSGT00940000164285.a ENSGT00940000155970 ENSGT00940000154537.lb ##26 ENSGT00390000016042 ENSGT00600000084626 ENSGT00940000160573 ENSGT00390000007203 ENSGT00940000160735 ENSGT00390000015226.d ENSGT00940000161547 ENSGT01030000234549.a.b #22 ENSGT00570000079216 ENSGT00940000164278 #23 ENSGT00940000160175.b ##24 ENSGT00390000011408 ENSGT00940000165215.a ENSGT00940000164759 ENSGT00940000158584 ENSGT00940000177920 ENSGT00940000155715 ENSGT00940000160595.a.a ##25 ENSGT00940000156981 ENSGT00940000157500 ENSGT00940000158949 ENSGT00390000009948.c ENSGT00940000155780 Oryzias ANCESTRAL SPECIES 6 ENSGT01030000234532.A.a.a.b.j.a ENSGT00940000154866.B.a ENSGT00940000154200.A.b ENSGT00940000156083 ENSGT00940000157348 ENSGT00390000012337 ENSGT00940000153577.A ENSGT00510000046499.f ENSGT00940000154537.lb ##26 ENSGT00390000016042 ENSGT00600000084626 ENSGT00940000160573 ENSGT00940000160735 ENSGT00390000015226.d ENSGT00940000161547 ENSGT01030000234549.a.b #22 ENSGT00570000079216 ENSGT00940000164278 #23 ENSGT00940000160175.b ##24 ENSGT00390000011408 ENSGT00940000165215.a ENSGT00940000164759 ENSGT00940000158584 ENSGT00940000177920 ENSGT00940000155715 ENSGT00940000160595.a.a ##25 ENSGT00940000156981 ENSGT00940000157500 ENSGT00940000158949 ENSGT00390000009948.c ENSGT00940000155780.k.a Oryzias_b ANCESTRAL SPECIES 49 ENSGT01030000234532.A.a.a.b.j.a ENSGT00940000154866.B.a ENSGT00940000154200.A.b ENSGT00940000156083 ENSGT00940000157348 ENSGT00390000012337 ENSGT00940000153577.A ENSGT00510000046499.f ENSGT00940000154537.lb ##26 ENSGT00390000016042 ENSGT00600000084626 ENSGT00940000160573 ENSGT00940000160735 ENSGT00390000015226.d ENSGT00940000161547 ENSGT01030000234549.a.b #22 ENSGT00570000079216 ENSGT00940000164278 #23 ENSGT00940000160175.b ##24 ENSGT00390000011408 ENSGT00940000165215.a ENSGT00940000164759 ENSGT00940000158584 ENSGT00940000155715 ENSGT00940000160595.a.a ##25 ENSGT00940000156981 ENSGT00940000157500 ENSGT00940000158949 ENSGT00390000009948.c ENSGT00940000155780.k.a ENSGT00940000157736 Indian medaka MODERN SPECIES 27 RIN2 (ENSOMEG00000001939) ENSOMEG00000001925 pcca (ENSOMEG00000001912) ENSOMEG00000001896 ENSOMEG00000000998 CDT1 (ENSOMEG00000001880) ENSOMEG00000001859 cbr1 (ENSOMEG00000001847) mxtx1 (ENSOMEG00000001842) ##26 ENSOMEG00000001836 ENSOMEG00000000665 STK32C (ENSOMEG00000001824) PWWP2B (ENSOMEG00000001817) INPP5A (ENSOMEG00000001808) nkx6.2 (ENSOMEG00000001792) valopa (ENSOMEG00000001785) #22 ENSOMEG00000001777 ENSOMEG00000001767 ENSOMEG00000001759 #23 ENSOMEG00000001748 ##24 ENSOMEG00000001733 vox (ENSOMEG00000001730) ENSOMEG00000001729 dntt (ENSOMEG00000001723) ENSOMEG00000001709 ENSOMEG00000001703 macroh2a2 (ENSOMEG00000001698) GBF1 (ENSOMEG00000001687) GBF1 (ENSOMEG00000001669) pitx3 (ENSOMEG00000001662) hspa12a (ENSOMEG00000001644) Javanese ricefish MODERN SPECIES 6 ENSOJAG00000015517 SLC24A3 (ENSOJAG00000015537) RIN2 (ENSOJAG00000015841) ENSOJAG00000015870 pcca (ENSOJAG00000015899) CDT1 (ENSOJAG00000018238) ENSOJAG00000018262 cbr1 (ENSOJAG00000018300) mxtx1 (ENSOJAG00000018319) ##26 tmem254 (ENSOJAG00000018330) ENSOJAG00000018344 STK32C (ENSOJAG00000018392) PWWP2B (ENSOJAG00000018710) INPP5A (ENSOJAG00000018734) nkx6.2 (ENSOJAG00000018968) valopa (ENSOJAG00000018981) #22 ENSOJAG00000019031 ENSOJAG00000005117 ENSOJAG00000005135 #23 ADGRA1 (ENSOJAG00000005149) ##24 ENSOJAG00000005165 vox (ENSOJAG00000005173) ENSOJAG00000005184 dntt (ENSOJAG00000005201) blnk (ENSOJAG00000005236) ENSOJAG00000005271 ##25 CCNJ (ENSOJAG00000005276) cpeb3 (ENSOJAG00000006321) marchf5 (ENSOJAG00000006507) ide (ENSOJAG00000006576) cdc42ep3 (ENSOJAG00000007125) Oryzias_a ANCESTRAL SPECIES 4 ENSGT00390000007683 ENSGT00990000204611.d ENSGT01030000234532.A.a.a.b.j.a ENSGT00940000154866.B.a ENSGT00940000154200.A.b ENSGT00940000156083 ENSGT00940000157348 ENSGT00390000012337 ENSGT00940000153577.A ENSGT00940000182531 ENSGT00600000084626 ENSGT00940000160573 ENSGT00940000160735 ENSGT00390000015226.d ENSGT00940000161547 ENSGT01030000234549.a.b #22 ENSGT00570000079216 ENSGT00940000164278 #23 ENSGT00940000160175.b ##24 ENSGT00390000011408 ENSGT00940000165215.a ENSGT00940000164759 ENSGT00940000158584 ENSGT00940000177920 ENSGT00940000155715 ENSGT00940000160595.a.a ##25 ENSGT00940000156981 ENSGT00940000157500 ENSGT00940000158949 ENSGT00390000009948.c ENSGT00940000155780.k.a Chinese medaka MODERN SPECIES 1329 RNF166 (ENSOSIG00000009927) cyp17a1 (ENSOSIG00000009662) borcs7 (ENSOSIG00000009658) ENSOSIG00000009656 ENSOSIG00000009426 RIN2 (ENSOSIG00000009424) ENSOSIG00000009423 pcca (ENSOSIG00000009007) PIEZO1 (ENSOSIG00000008364) ENSOSIG00000008353 ENSOSIG00000008352 STK32C (ENSOSIG00000008351) PWWP2B (ENSOSIG00000008350) INPP5A (ENSOSIG00000008316) nkx6.2 (ENSOSIG00000008305) valopa (ENSOSIG00000008303) #22 ENSOSIG00000008301 ENSOSIG00000008298 #23 ADGRA1 (ENSOSIG00000008297) ##24 ENSOSIG00000008294 vox (ENSOSIG00000008292) ENSOSIG00000008289 Japanese Medaka HdrR MODERN SPECIES 6 PIEZO1 (ENSORLG00000000402) ENSORLG00000029276 CDT1 (ENSORLG00000000411) SETD4 (ENSORLG00000000434) ENSORLG00000029693 ENSORLG00000027490 cbr1 (ENSORLG00000000452) mxtx1 (ENSORLG00000000457) ##26 ENSORLG00000025443 ENSORLG00000000468 STK32C (ENSORLG00000000480) ENSORLG00000023918 PWWP2B (ENSORLG00000000489) INPP5A (ENSORLG00000000540) nkx6.2 (ENSORLG00000026825) valopa (ENSORLG00000000556) #22 ENSORLG00000022977 ENSORLG00000029700 ENSORLG00000000601 #23 ENSORLG00000030623 ADGRA1 (ENSORLG00000000620) ##24 ENSORLG00000024250 vox (ENSORLG00000000633) ENSORLG00000024036 dntt (ENSORLG00000000644) ENSORLG00000029694 blnk (ENSORLG00000000661) ENSORLG00000000665 ##25 ENSORLG00000000674 BTAF1 (ENSORLG00000000700) cpeb3 (ENSORLG00000000726) Cyprinodontiformes ANCESTRAL SPECIES 17 ENSGT00730000110943.B.c ENSGT00950000182980.a.b.b.b ENSGT00940000158638 ENSGT00940000154141.B ENSGT00940000165391 ENSGT00940000164285.a ENSGT00940000155970 ENSGT00940000154537.lb ##26 ENSGT00390000016042 ENSGT00600000084626 ENSGT00940000160573 ENSGT00390000007203 ENSGT00940000160735 ENSGT00390000015226.d ENSGT00940000161547 ENSGT01030000234549.a.b #22 ENSGT00570000079216 ENSGT00940000164278 #23 ENSGT00940000160175.b ##24 ENSGT00390000011408 ENSGT00940000165215.a ENSGT00940000164759 ENSGT00940000158584 ENSGT00940000177920 ENSGT00940000155715 ENSGT00940000160595.a.a ##25 ENSGT00940000156981 ENSGT00940000157500 ENSGT00940000158949 ENSGT00390000009948.c ENSGT00940000155780 Cyprinodontoidei ANCESTRAL SPECIES 14 ENSGT00730000110943.B.c ENSGT00950000182980.a.b.b.b ENSGT00940000158638 ENSGT00940000154141.B ENSGT00940000165391 ENSGT00940000164285.a ENSGT00940000155970 ENSGT00940000154537.lb ##26 ENSGT00390000016042 ENSGT00600000084626 ENSGT00940000160573 ENSGT00390000007203 ENSGT00940000160735 ENSGT00390000015226.d ENSGT00940000161547 ENSGT01030000234549.a.b #22 ENSGT00570000079216 ENSGT00940000164278 #23 ENSGT00940000160175.b ##24 ENSGT00390000011408 ENSGT00940000165215.a ENSGT00940000164759 ENSGT00940000158584 ENSGT00940000177920 ENSGT00940000155715 ENSGT00940000160595.a.a ##25 ENSGT00940000156981 ENSGT00940000157500 ENSGT00940000158949 ENSGT00390000009948.c ENSGT00940000155780 NAME_4 ANCESTRAL SPECIES 58 ENSGT00730000110943.B.c ENSGT00950000182980.a.b.b.b ENSGT00940000158638 ENSGT00940000154141.B ENSGT00940000165391 ENSGT00940000164285.a ENSGT00940000155970 ENSGT00940000154537.lb ##26 ENSGT00390000016042 ENSGT00600000084626 ENSGT00940000160573 ENSGT00390000007203 ENSGT00940000160735 ENSGT00390000015226.d ENSGT00940000161547 ENSGT01030000234549.a.b #22 ENSGT00570000079216 ENSGT00940000164278 #23 ENSGT00940000160175.b ##24 ENSGT00390000011408 ENSGT00940000165215.a ENSGT00940000164759 ENSGT00940000158584 ENSGT00940000177920 ENSGT00940000156981 ENSGT00940000157500 ENSGT00940000158949 ENSGT00390000009948.c ENSGT00940000155780 ENSGT00390000000747 ENSGT01100000263502.A.a.b Sheepshead minnow MODERN SPECIES 520 INPP5A (ENSCVAG00000008169) nkx6.2 (ENSCVAG00000008201) valopa (ENSCVAG00000008251) #22 jag1b (ENSCVAG00000008444) BTBD3 (ENSCVAG00000000242) sptlc3 (ENSCVAG00000008555) ism1 (ENSCVAG00000008572) tasp1 (ENSCVAG00000008744) Mummichog MODERN SPECIES 2195 ENSFHEG00000020652 calm2a (ENSFHEG00000020657) TTC7A (ENSFHEG00000020687) mcfd2 (ENSFHEG00000020700) ENSFHEG00000020714 socs5b (ENSFHEG00000020721) rhoq (ENSFHEG00000020742) mxtx1 (ENSFHEG00000020765) ##26 ENSFHEG00000020772 ENSFHEG00000020811 STK32C (ENSFHEG00000020845) ENSFHEG00000020866 PWWP2B (ENSFHEG00000020873) INPP5A (ENSFHEG00000000519) nkx6.2 (ENSFHEG00000020909) valopa (ENSFHEG00000020929) #22 ENSFHEG00000020944 ENSFHEG00000020954 ENSFHEG00000020960 #23 ADGRA1 (ENSFHEG00000021011) ##24 ENSFHEG00000021021 vox (ENSFHEG00000021027) ENSFHEG00000021033 dntt (ENSFHEG00000021138) blnk (ENSFHEG00000021156) ENSFHEG00000021174 BTAF1 (ENSFHEG00000021288) cpeb3 (ENSFHEG00000021371) marchf5 (ENSFHEG00000021388) ide (ENSFHEG00000021532) kmo (ENSFHEG00000021606) Poeciliinae ANCESTRAL SPECIES 16 ENSGT00730000110943.B.c ENSGT00950000182980.a.b.b.b ENSGT00940000158638 ENSGT00940000154141.B ENSGT00940000165391 ENSGT00940000164285.a ENSGT00940000155970 ENSGT00940000154537.lb ##26 ENSGT00390000016042 ENSGT00600000084626 ENSGT00940000160573 ENSGT00390000007203 ENSGT00940000160735 ENSGT00390000015226.d ENSGT00940000161547 ENSGT01030000234549.a.b #22 ENSGT00570000079216 ENSGT00940000164278 #23 ENSGT00940000160175.b ##24 ENSGT00390000011408 ENSGT00940000165215.a ENSGT00940000164759 ENSGT00940000158584 ENSGT00940000177920 ENSGT00940000155715 ENSGT00940000160595.a.a ##25 ENSGT00940000156981 ENSGT00940000157500 ENSGT00940000158949 ENSGT00390000009948.c ENSGT00940000155780 Poecilia ANCESTRAL SPECIES 11 ENSGT00730000110943.B.c ENSGT00950000182980.a.b.b.b ENSGT00940000158638 ENSGT00940000154141.B ENSGT00940000165391 ENSGT00940000164285.a ENSGT00940000155970 ENSGT00940000154537.lb ##26 ENSGT00390000016042 ENSGT00600000084626 ENSGT00940000160573 ENSGT00390000007203 ENSGT00940000160735 ENSGT00390000015226.d ENSGT00940000161547 ENSGT01030000234549.a.b #22 ENSGT00570000079216 ENSGT00940000164278 #23 ENSGT00940000160175.b ##24 ENSGT00390000011408 ENSGT00940000165215.a ENSGT00940000164759 ENSGT00940000158584 ENSGT00940000177920 ENSGT00940000155715 ENSGT00940000160595.a.a ##25 ENSGT00940000156981 ENSGT00940000157500 ENSGT00940000158949 ENSGT00390000009948.c ENSGT00940000155780 NAME_6 ANCESTRAL SPECIES 203 ENSGT00730000110943.B.c ENSGT00950000182980.a.b.b.b ENSGT00940000158638 ENSGT00940000154141.B ENSGT00940000165391 ENSGT00940000164285.a ENSGT00940000155970 ENSGT00940000154537.lb ##26 ENSGT00390000016042 ENSGT00600000084626 ENSGT00940000160573 ENSGT00390000007203 ENSGT00940000160735 ENSGT00390000015226.d ENSGT00940000161547 ENSGT01030000234549.a.b #22 ENSGT00570000079216 ENSGT00940000164278 #23 ENSGT00940000160175.b ##24 ENSGT00390000011408 ENSGT00940000165215.a ENSGT00940000164759 Amazon molly MODERN SPECIES 449 rhoq (ENSPFOG00000004834) ENSPFOG00000004918 ##26 tmem254 (ENSPFOG00000004937) ENSPFOG00000005014 ENSPFOG00000005146 STK32C (ENSPFOG00000005239) ENSPFOG00000024408 PWWP2B (ENSPFOG00000005628) INPP5A (ENSPFOG00000005662) nkx6.2 (ENSPFOG00000005993) INPP5A (ENSPFOG00000006039) nkx6.2 (ENSPFOG00000006051) valopa (ENSPFOG00000006068) #22 ENSPFOG00000022798 ENSPFOG00000006137 ENSPFOG00000006396 #23 ENSPFOG00000006646 ##24 KNDC1 (ENSPFOG00000007111) vox (ENSPFOG00000007396) ENSPFOG00000020031 Sailfin molly MODERN SPECIES 2785 valopa (ENSPLAG00000007621) #22 Guppy MODERN SPECIES 445 ENSPREG00000010681 calm2a (ENSPREG00000010724) TTC7A (ENSPREG00000010741) ENSPREG00000010761 mcfd2 (ENSPREG00000010773) ENSPREG00000010783 socs5b (ENSPREG00000010792) rhoq (ENSPREG00000010809) ENSPREG00000010831 ##26 tmem254 (ENSPREG00000010846) ENSPREG00000010867 STK32C (ENSPREG00000010915) ENSPREG00000010951 PWWP2B (ENSPREG00000010970) nkx6.2 (ENSPREG00000010999) valopa (ENSPREG00000011010) #22 ENSPREG00000011030 ENSPREG00000011069 ENSPREG00000011098 ENSPREG00000011122 slc22a15 (ENSPREG00000011151) ENSPREG00000011177 kif11 (ENSPREG00000011297) EGR2 (ENSPREG00000011993) adob (ENSPREG00000012002) foxg1d (ENSPREG00000012020) slc30a6 (ENSPREG00000012044) sult6b1 (ENSPREG00000012075) ENSPREG00000012118 EML6 (ENSPREG00000012147) ENSPREG00000012218 Platyfish MODERN SPECIES 14 ENSXMAG00000007473 calm2a (ENSXMAG00000007477) TTC7A (ENSXMAG00000007479) mcfd2 (ENSXMAG00000007510) ENSXMAG00000007514 socs5b (ENSXMAG00000019827) rhoq (ENSXMAG00000007515) mxtx1 (ENSXMAG00000007518) ##26 ENSXMAG00000007521 ENSXMAG00000007525 STK32C (ENSXMAG00000007528) ENSXMAG00000028891 PWWP2B (ENSXMAG00000007540) INPP5A (ENSXMAG00000007542) nkx6.2 (ENSXMAG00000007554) valopa (ENSXMAG00000029737) #22 ENSXMAG00000007566 ENSXMAG00000017068 #23 ADGRA1 (ENSXMAG00000007574) ##24 KNDC1 (ENSXMAG00000007589) vox (ENSXMAG00000007597) ENSXMAG00000019828 dntt (ENSXMAG00000007601) blnk (ENSXMAG00000025725) CCNJ (ENSXMAG00000007625) ENSXMAG00000025492 cpeb3 (ENSXMAG00000007652) marchf5 (ENSXMAG00000007675) ENSXMAG00000009019 ENSXMAG00000009048 EML4 (ENSXMAG00000009050) Aplocheiloidei ANCESTRAL SPECIES 230 ENSGT00390000015226.d ENSGT00940000161547 ENSGT01030000234549.a.b #22 ENSGT00570000079216 ENSGT00940000164278 #23 ENSGT00940000160175.b ##24 ENSGT00390000011408 ENSGT00940000165215.a ENSGT00940000164759 ENSGT00940000158584 Mangrove rivulus MODERN SPECIES 222 INPP5A (ENSKMAG00000015822) nkx6.2 (ENSKMAG00000015807) valopa (ENSKMAG00000015793) #22 ENSKMAG00000015766 ENSKMAG00000015745 #23 ADGRA1 (ENSKMAG00000015735) ##24 KNDC1 (ENSKMAG00000015708) vox (ENSKMAG00000015693) ENSKMAG00000015689 dntt (ENSKMAG00000015664) Turquoise killifish MODERN SPECIES 1012 valopa (ENSNFUG00015011975) #22 Ovalentaria_B ANCESTRAL SPECIES 25 ENSGT00950000182980.a.b.b.b ENSGT00940000167263 ENSGT00940000158638 ENSGT00940000154141.B ENSGT00940000165391 ENSGT00940000164285.a ENSGT00940000155970 ENSGT00940000154537.lb ##26 ENSGT00390000016042 ENSGT00600000084626 ENSGT00940000160573 ENSGT00390000007203 ENSGT00940000160735 ENSGT00390000015226.d ENSGT00940000161547 ENSGT01030000234549.a.b #22 ENSGT00570000079216 ENSGT00940000164278 #23 ENSGT00940000160175.b ##24 ENSGT00390000011408 ENSGT00940000165215.a ENSGT00940000165215.b ENSGT00940000164759 ENSGT00940000158584 ENSGT00940000177920 ENSGT00940000155715 ENSGT00940000160595.a.a ##25 ENSGT00940000156981 ENSGT00940000157500 ENSGT00940000158949 ENSGT00390000009948.c Pomacentridae ANCESTRAL SPECIES 36 ENSGT00950000182980.a.b.b.b ENSGT00940000167263 ENSGT00940000158638 ENSGT00940000154141.B ENSGT00940000162292 ENSGT00940000164285.a ENSGT00940000155970 ENSGT00940000154537.lb ##26 ENSGT00390000016042 ENSGT00600000084626 ENSGT00940000160573 ENSGT00390000007203 ENSGT00940000160735 ENSGT00390000015226.d ENSGT00940000161547 ENSGT01030000234549.a.b #22 ENSGT00570000079216 ENSGT00940000164278 #23 ENSGT00940000160175.b ##24 ENSGT00390000011408 ENSGT00940000165215.a ENSGT00940000165215.b ENSGT00940000164759 ENSGT00940000158584 ENSGT00940000177920 ENSGT00940000155715 ENSGT00940000160595.a.a ##25 ENSGT00940000156981 ENSGT00940000157500 ENSGT00940000158949 ENSGT00390000009948.c Pomacentridae_A ANCESTRAL SPECIES 41 ENSGT00950000182980.a.b.b.b ENSGT00940000167263 ENSGT00940000158638 ENSGT00940000154141.B ENSGT00940000162292 ENSGT00940000164285.a ENSGT00940000155970 ENSGT00940000154537.lb ##26 ENSGT00390000016042 ENSGT00600000084626 ENSGT00940000160573 ENSGT00390000007203 ENSGT00940000160735 ENSGT00390000015226.d ENSGT00940000161547 ENSGT01030000234549.a.b #22 ENSGT00570000079216 ENSGT00940000164278 #23 ENSGT00940000160175.b ##24 ENSGT00390000011408 ENSGT00940000165215.a ENSGT00940000165215.b ENSGT00940000164759 ENSGT00940000158584 ENSGT00940000177920 ENSGT00940000155715 ENSGT00940000160595.a.a ##25 ENSGT00940000156981 ENSGT00940000157500 ENSGT00940000158949 ENSGT00390000009948.c Spiny chromis DUPLICATION Spiny chromis MODERN SPECIES 555 ENSAPOG00000020675 #22 ENSAPOG00000020645 ENSAPOG00000020625 ENSAPOG00000020556 #23 Spiny chromis MODERN SPECIES 3179 valopa (ENSAPOG00000005266) #22 Amphiprion ANCESTRAL SPECIES 47 ENSGT00950000182980.a.b.b.b ENSGT00940000167263 ENSGT00940000158638 ENSGT00940000154141.B ENSGT00940000162292 ENSGT00940000164285.a ENSGT00940000155970 ENSGT00940000154537.lb ##26 ENSGT00390000016042 ENSGT00600000084626 ENSGT00940000160573 ENSGT00390000007203 ENSGT00940000160735 ENSGT00390000015226.d ENSGT00940000161547 ENSGT01030000234549.a.b #22 ENSGT00570000079216 ENSGT00940000164278 #23 ENSGT00940000160175.b ##24 ENSGT00390000011408 ENSGT00940000165215.a ENSGT00940000165215.b ENSGT00940000164759 ENSGT00940000158584 ENSGT00940000177920 ENSGT00940000155715 ENSGT00940000160595.a.a ##25 ENSGT00940000156981 ENSGT00940000157500 ENSGT00940000158949 ENSGT00390000009948.c Clown anemonefish MODERN SPECIES 1703 nkx6.2 (ENSAOCG00000006772) valopa (ENSAOCG00000006757) #22 ENSAOCG00000000333 ENSAOCG00000006729 ENSAOCG00000006691 #23 ADGRA1 (ENSAOCG00000000323) ##24 ENSAOCG00000006654 ENSAOCG00000006638 Orange clownfish MODERN SPECIES 12 calm2a (ENSAPEG00000006472) si:ch211-93n23.7 (ENSAPEG00000006439) TTC7A (ENSAPEG00000006408) mcfd2 (ENSAPEG00000006376) ENSAPEG00000006362 socs5b (ENSAPEG00000006338) rhoq (ENSAPEG00000006311) mxtx1 (ENSAPEG00000006288) ##26 tmem254 (ENSAPEG00000006280) ENSAPEG00000006236 STK32C (ENSAPEG00000006194) ENSAPEG00000006153 PWWP2B (ENSAPEG00000006145) INPP5A (ENSAPEG00000006102) nkx6.2 (ENSAPEG00000006080) valopa (ENSAPEG00000006064) #22 ENSAPEG00000006047 ENSAPEG00000005996 ENSAPEG00000005962 #23 ENSAPEG00000005860 ADGRA1 (ENSAPEG00000005838) ##24 ENSAPEG00000005822 vox (ENSAPEG00000005806) ENSAPEG00000005784 ENSAPEG00000005778 dntt (ENSAPEG00000005646) blnk (ENSAPEG00000005568) ENSAPEG00000005536 ##25 CCNJ (ENSAPEG00000005522) BTAF1 (ENSAPEG00000005376) cpeb3 (ENSAPEG00000005329) Bicolor damselfish MODERN SPECIES 1621 valopa (ENSSPAG00000015356) #22 ENSSPAG00000015322 Cichlidae ANCESTRAL SPECIES 13 ENSGT00950000182980.a.b.b.b ENSGT00940000167263 ENSGT00940000158638 ENSGT00940000154141.B ENSGT00940000165391 ENSGT00940000164285.a ENSGT00940000155970 ENSGT00940000154537.lb ##26 ENSGT00390000016042 ENSGT00600000084626 ENSGT00940000160573 ENSGT00390000007203 ENSGT00940000160735 ENSGT00390000015226.d ENSGT00940000161547 ENSGT01030000234549.a.b #22 ENSGT00570000079216 ENSGT00940000164278 #23 ENSGT00940000160175.b ##24 ENSGT00390000011408 ENSGT00940000165215.a ENSGT00940000165215.b ENSGT00940000164759 ENSGT00940000158584 ENSGT00940000155715 ENSGT00940000160595.a.a ##25 ENSGT00940000156981 ENSGT00940000157500 ENSGT00940000158949 ENSGT00390000009948.c ENSGT00940000155780 Pseudocrenilabrinae ANCESTRAL SPECIES 16 ENSGT00950000182980.a.b.b.b ENSGT00940000167263 ENSGT00940000158638 ENSGT00940000154141.B ENSGT00940000165391 ENSGT00940000164285.a ENSGT00940000155970 ENSGT00940000154537.lb ##26 ENSGT00390000016042 ENSGT00600000084626 ENSGT00940000160573 ENSGT00390000007203 ENSGT00940000160735 ENSGT00390000015226.d ENSGT00940000161547 ENSGT01030000234549.a.b #22 ENSGT00570000079216 ENSGT00940000164278 #23 ENSGT00940000160175.b ##24 ENSGT00390000011408 ENSGT00940000165215.a ENSGT00940000165215.b ENSGT00940000164759 ENSGT00940000158584 ENSGT00940000155715 ENSGT00940000160595.a.a ##25 ENSGT00940000156981 ENSGT00940000157500 ENSGT00940000158949 ENSGT00390000009948.c ENSGT00940000155780.p Pseudocrenilabrinae_A ANCESTRAL SPECIES 11 ENSGT00950000182980.a.b.b.b ENSGT00940000167263 ENSGT00940000158638 ENSGT00940000154141.B ENSGT00940000165391 ENSGT00940000164285.a ENSGT00940000155970 ENSGT00940000154537.lb ##26 ENSGT00390000016042 ENSGT00600000084626 ENSGT00940000160573 ENSGT00390000007203 ENSGT00940000160735 ENSGT00390000015226.d ENSGT00940000161547 ENSGT01030000234549.a.b #22 ENSGT00570000079216 ENSGT00940000164278 #23 ENSGT00940000160175.b ##24 ENSGT00390000011408 ENSGT00940000165215.a ENSGT00940000165215.b ENSGT00940000164759 ENSGT00940000158584 ENSGT00940000155715 ENSGT00940000160595.a.a ##25 ENSGT00940000156981 ENSGT00940000157500 ENSGT00940000158949 ENSGT00390000009948.c ENSGT00940000155780.p Haplochromini ANCESTRAL SPECIES 10 ENSGT00950000182980.a.b.b.b ENSGT00940000167263 ENSGT00940000158638 ENSGT00940000154141.B ENSGT00940000165391 ENSGT00940000164285.a ENSGT00940000155970 ENSGT00940000154537.lb ##26 ENSGT00390000016042 ENSGT00600000084626 ENSGT00940000160573 ENSGT00390000007203 ENSGT00940000160735 ENSGT00390000015226.d ENSGT00940000161547 ENSGT01030000234549.a.b #22 ENSGT00570000079216 ENSGT00940000164278 #23 ENSGT00940000160175.b ##24 ENSGT00390000011408 ENSGT00940000165215.a ENSGT00940000165215.b ENSGT00940000164759 ENSGT00940000158584 ENSGT00940000155715 ENSGT00940000160595.a.a ##25 ENSGT00940000156981 ENSGT00940000157500 ENSGT00940000158949 ENSGT00390000009948.c ENSGT00940000155780.p Burton s mouthbrooder MODERN SPECIES 481 calm2a (ENSHBUG00000008419) si:ch211-93n23.7 (ENSHBUG00000000209) TTC7A (ENSHBUG00000008456) mcfd2 (ENSHBUG00000008473) ENSHBUG00000008480 socs5b (ENSHBUG00000008489) rhoq (ENSHBUG00000008514) ENSHBUG00000008528 ##26 ENSHBUG00000008541 ENSHBUG00000008604 STK32C (ENSHBUG00000008646) ENSHBUG00000008653 PWWP2B (ENSHBUG00000000215) INPP5A (ENSHBUG00000008724) nkx6.2 (ENSHBUG00000008756) valopa (ENSHBUG00000008799) #22 Haplochromini_A ANCESTRAL SPECIES 8 ENSGT00950000182980.a.b.b.b ENSGT00940000167263 ENSGT00940000158638 ENSGT00940000154141.B ENSGT00940000165391 ENSGT00940000164285.a ENSGT00940000155970 ENSGT00940000154537.lb ##26 ENSGT00390000016042 ENSGT00600000084626 ENSGT00940000160573 ENSGT00390000007203 ENSGT00940000160735 ENSGT00390000015226.d ENSGT00940000161547 ENSGT01030000234549.a.b #22 ENSGT00570000079216 ENSGT00940000164278 #23 ENSGT00940000160175.b ##24 ENSGT00390000011408 ENSGT00940000165215.a ENSGT00940000164759 ENSGT00940000158584 ENSGT00940000155715 ENSGT00940000160595.a.a ##25 ENSGT00940000156981 ENSGT00940000157500 ENSGT00940000158949 ENSGT00390000009948.c ENSGT00940000155780.p ENSGT00940000155780.o P. nyererei MODERN SPECIES 357 ENSPNYG00000006335 ENSPNYG00000006295 calm2a (ENSPNYG00000006272) si:ch211-93n23.7 (ENSPNYG00000006257) TTC7A (ENSPNYG00000006096) mcfd2 (ENSPNYG00000006022) ENSPNYG00000006008 socs5b (ENSPNYG00000005996) rhoq (ENSPNYG00000005981) ENSPNYG00000005967 ##26 ENSPNYG00000005941 STK32C (ENSPNYG00000005894) PWWP2B (ENSPNYG00000005877) INPP5A (ENSPNYG00000005824) nkx6.2 (ENSPNYG00000005795) valopa (ENSPNYG00000005773) #22 ENSPNYG00000005725 ENSPNYG00000005676 #23 ADGRA1 (ENSPNYG00000005639) ##24 ENSPNYG00000005624 vox (ENSPNYG00000005586) ENSPNYG00000005561 dntt (ENSPNYG00000005503) ENSPNYG00000005468 ENSPNYG00000005457 ##25 CCNJ (ENSPNYG00000005440) BTAF1 (ENSPNYG00000005349) cpeb3 (ENSPNYG00000005300) marchf5 (ENSPNYG00000005261) ide (ENSPNYG00000005074) kmo (ENSPNYG00000005012) Haplochromini_B ANCESTRAL SPECIES 59 ENSGT00950000182980.a.b.b.b ENSGT00940000167263 ENSGT00940000158638 ENSGT00940000154141.B ENSGT00940000165391 ENSGT00940000164285.a ENSGT00940000155970 ENSGT00940000154537.lb ##26 ENSGT00390000016042 ENSGT00600000084626 ENSGT00940000160573 ENSGT00390000007203 ENSGT00940000160735 ENSGT00390000015226.d ENSGT00940000161547 ENSGT01030000234549.a.b #22 ENSGT00570000079216 ENSGT00940000164278 #23 ENSGT00940000160175.b ##24 ENSGT00390000011408 ENSGT00940000165215.a ENSGT00940000177959 ENSGT00940000165707 ENSGT00950000183206.a.b.a.a.b.d ENSGT00940000159804 ENSGT01020000230360.c.b.a.b.b.d.b.b ENSGT00940000157686 ENSGT00940000153635.A ENSGT00940000158592 ENSGT00940000159359 ENSGT00940000156765.a.b Eastern happy MODERN SPECIES 4 si:ch211-93n23.7 (ENSACLG00000016569) TTC7A (ENSACLG00000016632) mcfd2 (ENSACLG00000016947) ENSACLG00000016952 socs5b (ENSACLG00000016971) rhoq (ENSACLG00000016986) ENSACLG00000017012 ##26 ENSACLG00000017026 ENSACLG00000017033 STK32C (ENSACLG00000017108) ENSACLG00000017200 LRRC27 (ENSACLG00000017210) PWWP2B (ENSACLG00000017264) INPP5A (ENSACLG00000017291) nkx6.2 (ENSACLG00000017440) valopa (ENSACLG00000017468) #22 CFAP46 (ENSACLG00000017504) ENSACLG00000017665 #23 ENSACLG00000017692 ENSACLG00000017709 ENSACLG00000017723 ##24 KNDC1 (ENSACLG00000017774) vox (ENSACLG00000017850) vent (ENSACLG00000017858) ENSACLG00000017879 ENSACLG00000017891 dntt (ENSACLG00000017957) ENSACLG00000018158 ENSACLG00000018295 ##25 CCNJ (ENSACLG00000018307) BTAF1 (ENSACLG00000018336) Zebra mbuna MODERN SPECIES 1095 calm2a (ENSMZEG00005018099) si:ch211-93n23.7 (ENSMZEG00005018098) TTC7A (ENSMZEG00005018070) mcfd2 (ENSMZEG00005018060) ENSMZEG00005018057 socs5b (ENSMZEG00005018055) rhoq (ENSMZEG00005018052) ENSMZEG00005018050 ##26 ENSMZEG00005018049 ENSMZEG00005018046 STK32C (ENSMZEG00005018031) LRRC27 (ENSMZEG00005018023) PWWP2B (ENSMZEG00005018021) INPP5A (ENSMZEG00005018019) nkx6.2 (ENSMZEG00005018013) valopa (ENSMZEG00005012467) #22 ENSMZEG00005012435 ENSMZEG00005012425 ENSMZEG00005012412 ENSMZEG00005012402 ENSMZEG00005012395 ENSMZEG00005012386 ENSMZEG00005012379 ENSMZEG00005012374 ENSMZEG00005012358 ENSMZEG00005012342 #23 ENSMZEG00005012324 ##24 ENSMZEG00005012308 ENSMZEG00005012305 vox (ENSMZEG00005012301) vent (ENSMZEG00005012295) Lyretail cichlid MODERN SPECIES 349 ENSNBRG00000019453 calm2a (ENSNBRG00000019426) si:ch211-93n23.7 (ENSNBRG00000019404) TTC7A (ENSNBRG00000019362) mcfd2 (ENSNBRG00000019344) ENSNBRG00000019331 socs5b (ENSNBRG00000019321) rhoq (ENSNBRG00000019299) ENSNBRG00000019284 ##26 ENSNBRG00000019266 ENSNBRG00000019239 STK32C (ENSNBRG00000019203) PWWP2B (ENSNBRG00000019188) INPP5A (ENSNBRG00000019130) nkx6.2 (ENSNBRG00000019104) valopa (ENSNBRG00000018880) #22 ENSNBRG00000018710 ENSNBRG00000018663 #23 ADGRA1 (ENSNBRG00000018642) ##24 ENSNBRG00000018628 ENSNBRG00000018619 ENSNBRG00000018600 ENSNBRG00000018593 dntt (ENSNBRG00000018516) ENSNBRG00000018484 ENSNBRG00000018479 ##25 CCNJ (ENSNBRG00000018463) BTAF1 (ENSNBRG00000018377) cpeb3 (ENSNBRG00000018343) marchf5 (ENSNBRG00000018316) ide (ENSNBRG00000018270) Nile tilapia MODERN SPECIES 4 ENSONIG00000036065 vox (ENSONIG00000014851) ENSONIG00000014855 ENSONIG00000014860 ##24 ENSONIG00000014863 #23 zgc:162816 (ENSONIG00000034617) ENSONIG00000022337 LRRC27 (ENSONIG00000030055) PWWP2B (ENSONIG00000034603) INPP5A (ENSONIG00000007492) ENSONIG00000021280 ENSONIG00000033984 nkx6.2 (ENSONIG00000029020) ENSONIG00000034911 ENSONIG00000039179 valopa (ENSONIG00000007484) #22 ENSONIG00000007480 ENSONIG00000007473 STK32C (ENSONIG00000007502) ENSONIG00000007510 ENSONIG00000042662 ENSONIG00000039859 ##26 ENSONIG00000036340 ENSONIG00000037366 ENSONIG00000032600 ##26 ENSONIG00000032248 rhoq (ENSONIG00000003044) ENSONIG00000042326 ENSONIG00000036965 ENSONIG00000030620 socs5b (ENSONIG00000020613) Midas cichlid MODERN SPECIES 989 ENSACIG00000014437 calm2a (ENSACIG00000014472) si:ch211-93n23.7 (ENSACIG00000015301) TTC7A (ENSACIG00000015319) mcfd2 (ENSACIG00000015394) ENSACIG00000015406 rhoq (ENSACIG00000015449) ENSACIG00000015464 ##26 tmem254 (ENSACIG00000015480) ENSACIG00000015519 ENSACIG00000015553 STK32C (ENSACIG00000015592) PWWP2B (ENSACIG00000015619) INPP5A (ENSACIG00000015636) nkx6.2 (ENSACIG00000015666) valopa (ENSACIG00000015704) #22 ENSACIG00000015959 ENSACIG00000016011 #23 Pinecone sodierfish MODERN SPECIES 6 calm2a (ENSMMDG00005021233) si:ch211-93n23.7 (ENSMMDG00005021220) TTC7A (ENSMMDG00005021216) mcfd2 (ENSMMDG00005021213) ENSMMDG00005021212 socs5b (ENSMMDG00005021211) rhoq (ENSMMDG00005021207) mxtx1 (ENSMMDG00005021204) ##26 tmem254 (ENSMMDG00005021203) ENSMMDG00005021198 STK32C (ENSMMDG00005021182) LRRC27 (ENSMMDG00005021176) PWWP2B (ENSMMDG00005021175) INPP5A (ENSMMDG00005020875) nkx6.2 (ENSMMDG00005020858) valopa (ENSMMDG00005020837) #22 ENSMMDG00005020834 ENSMMDG00005020830 #23 ADGRA1 (ENSMMDG00005020626) ##24 ENSMMDG00005020597 vox (ENSMMDG00005020596) ENSMMDG00005020593 ENSMMDG00005020592 dntt (ENSMMDG00005020116) ENSMMDG00005020089 ENSMMDG00005020085 ENSMMDG00005020082 ##25 CCNJ (ENSMMDG00005020076) BTAF1 (ENSMMDG00005017880) cpeb3 (ENSMMDG00005017732) marchf5 (ENSMMDG00005017709) Cod MODERN SPECIES 6 ENSGMOG00000006917 calm2a (ENSGMOG00000035072) ENSGMOG00000023737 TTC7A (ENSGMOG00000029809) ENSGMOG00000006867 mcfd2 (ENSGMOG00000026763) ENSGMOG00000006852 ENSGMOG00000029837 ENSGMOG00000023749 ##26 ENSGMOG00000001725 ENSGMOG00000001694 STK32C (ENSGMOG00000001734) ENSGMOG00000036145 PWWP2B (ENSGMOG00000001770) nkx6.2 (ENSGMOG00000033363) valopa (ENSGMOG00000009622) #22 ENSGMOG00000035697 ENSGMOG00000017488 ENSGMOG00000036116 ENSGMOG00000024400 ENSGMOG00000029682 ENSGMOG00000024120 ENSGMOG00000029967 ENSGMOG00000024618 ENSGMOG00000024349 #23 ENSGMOG00000033324 ENSGMOG00000026971 ADGRA1 (ENSGMOG00000035007) ##24 ENSGMOG00000029976 ENSGMOG00000035229 vox (ENSGMOG00000007231) Protacanthopterygii ANCESTRAL SPECIES 39 ENSGT00940000158638 ENSGT00940000154141.B ENSGT00940000165391 ENSGT00940000164285.a ENSGT00390000013481.c.b.b ENSGT00940000155970 ENSGT00940000154537.lb ##26 ENSGT00390000016042 ENSGT00600000084626 ENSGT00940000160573 ENSGT00390000007203 ENSGT00940000160735 ENSGT00940000158240 ENSGT00390000015226.d ENSGT00940000161547 ENSGT01030000234549.a.b #22 ENSGT00570000079216 ENSGT00940000164278 #23 ENSGT00940000160175.b ##24 ENSGT00390000011408 ENSGT00940000165215.a ENSGT00940000165215.b ENSGT00940000164759 ENSGT00940000158584 ENSGT00940000155715 ENSGT00940000160595.a.a ##25 ENSGT00940000156981 ENSGT00940000156590 ENSGT00940000157500 ENSGT00940000158949 ENSGT00390000009948.c Salmoninae DUPLICATION Salmoninae ANCESTRAL SPECIES 61 ENSGT00950000182980.a.b.b.b.fc ENSGT00940000167263 ENSGT00940000158638.c ENSGT00940000154141.B.hb ENSGT00940000165391.e ENSGT00940000164285.a.b ENSGT00940000155970.z.b ENSGT00940000154537.lb.c ##26 ENSGT00600000084626.e ENSGT00940000160573.i ENSGT00390000007203 ENSGT00940000160735.b ENSGT00940000158240.o.a.a ENSGT00390000015226.d.i ENSGT00940000161547.a ENSGT01030000234549.a.b.g #22 ENSGT00940000164278.a #23 ENSGT00940000160175.b.b ##24 ENSGT00390000011408.r.b ENSGT00940000165215.a.g ENSGT00940000165215.b.c ENSGT00940000164759.c ENSGT00940000158584.e ENSGT00940000155715.ob.a ENSGT00940000160595.a.a.b ##25 ENSGT00940000156981 ENSGT00940000156590.qb ENSGT00940000157500.e ENSGT00940000158949.f ENSGT00390000009948.c.e ENSGT00940000155780.g Salmoninae_a ANCESTRAL SPECIES 71 ENSGT00950000182980.a.b.b.b.fc ENSGT00940000167263 ENSGT00940000158638.c ENSGT00940000154141.B.hb ENSGT00940000165391.e ENSGT00940000164285.a.b ENSGT00940000155970.z.b ENSGT00940000154537.lb.c ##26 ENSGT00600000084626.e ENSGT00940000160573.i ENSGT00390000007203 ENSGT00940000160735.b ENSGT00940000158240.o.a.a ENSGT00390000015226.d.i ENSGT00940000161547.a ENSGT01030000234549.a.b.g #22 ENSGT00940000164278.a #23 ENSGT00940000160175.b.b ##24 ENSGT00390000011408.r.b ENSGT00940000165215.a.g ENSGT00940000165215.b.c ENSGT00940000164759.c ENSGT00940000158584.e ENSGT00940000155715.ob.a ENSGT00940000160595.a.a.b ##25 ENSGT00940000156981 ENSGT00940000156590.qb ENSGT00940000157500.e ENSGT00940000158949.f ENSGT00390000009948.c.e ENSGT00940000155780.g Salmo ANCESTRAL SPECIES 29 ENSGT00950000182980.a.b.b.b.fc ENSGT00940000167263 ENSGT00940000158638.c ENSGT00940000154141.B.hb ENSGT00940000165391.e ENSGT00940000164285.a.b ENSGT00940000155970.z.b ENSGT00940000154537.lb.c ##26 ENSGT00600000084626.e ENSGT00940000160573.i ENSGT00390000007203 ENSGT00940000160735.b ENSGT00940000158240.o.a.a ENSGT00390000015226.d.i ENSGT00940000161547.a ENSGT01030000234549.a.b.g #22 ENSGT00940000164278.a #23 ENSGT00940000160175.b.b ##24 ENSGT00390000011408.r.b ENSGT00940000165215.a.g ENSGT00940000165215.b.c ENSGT00940000164759.c ENSGT00940000158584.e ENSGT00940000155715.ob.a ENSGT00940000160595.a.a.b ##25 ENSGT00940000156981 ENSGT00940000156590.qb ENSGT00940000157500.e ENSGT00940000158949.f ENSGT00390000009948.c.e ENSGT00940000155780.g River trout MODERN SPECIES 35 si:ch211-93n23.7 (ENSSTUG00000000852) TTC7A (ENSSTUG00000000889) mcfd2 (ENSSTUG00000000972) ENSSTUG00000000979 socs5b (ENSSTUG00000000983) rhoq (ENSSTUG00000000990) mxtx1 (ENSSTUG00000000998) ##26 ENSSTUG00000001011 ENSSTUG00000001013 STK32C (ENSSTUG00000001052) LRRC27 (ENSSTUG00000001132) PWWP2B (ENSSTUG00000001147) csad (ENSSTUG00000001209) INPP5A (ENSSTUG00000001855) nkx6.2 (ENSSTUG00000002355) valopa (ENSSTUG00000002359) #22 ENSSTUG00000002386 #23 ADGRA1 (ENSSTUG00000002423) ##24 ENSSTUG00000002521 KNDC1 (ENSSTUG00000002537) vox (ENSSTUG00000002610) ENSSTUG00000002622 ENSSTUG00000002643 dntt (ENSSTUG00000002660) blnk (ENSSTUG00000002735) ENSSTUG00000002791 ##25 CCNJ (ENSSTUG00000002803) ENSSTUG00000002818 BTAF1 (ENSSTUG00000003038) cpeb3 (ENSSTUG00000007732) marchf5 (ENSSTUG00000007796) Atlantic salmon MODERN SPECIES 9 cssa18h2orf61 (ENSSSAG00000067311) ENSSSAG00000097460 TTC7A (ENSSSAG00000067301) ENSSSAG00000067292 ENSSSAG00000067289 ENSSSAG00000122159 ENSSSAG00000112162 ##26 ENSSSAG00000067266 ENSSSAG00000086684 STK32C (ENSSSAG00000067124) ENSSSAG00000104485 PWWP2B (ENSSSAG00000067115) ENSSSAG00000065855 INPP5A (ENSSSAG00000065803) nkx6.2 (ENSSSAG00000065797) valopa (ENSSSAG00000065787) #22 ENSSSAG00000088138 #23 ADGRA1 (ENSSSAG00000065761) ##24 KNDC1 (ENSSSAG00000065748) vox (ENSSSAG00000065728) ENSSSAG00000065726 ENSSSAG00000065716 dntt (ENSSSAG00000065644) blnk (ENSSSAG00000065613) ENSSSAG00000065602 ##25 ENSSSAG00000065592 ENSSSAG00000096692 BTAF1 (ENSSSAG00000057145) cpeb3 (ENSSSAG00000056801) marchf5 (ENSSSAG00000056762) ide (ENSSSAG00000053985) Oncorhynchus ANCESTRAL SPECIES 2 ENSGT00950000182980.a.b.b.b.fc ENSGT00940000167263 ENSGT00940000158638.c ENSGT00940000154141.B.hb ENSGT00940000165391.e ENSGT00940000164285.a.b ENSGT00940000155970.z.b ENSGT00940000154537.lb.c ##26 ENSGT00600000084626.e ENSGT00940000160573.i ENSGT00390000007203 ENSGT00940000160735.b ENSGT00940000158240.o.a.a ENSGT00390000015226.d.i ENSGT00940000161547.a ENSGT01030000234549.a.b.g #22 ENSGT00940000164278.a #23 ENSGT00940000160175.b.b ##24 ENSGT00390000011408.r.b ENSGT00940000165215.a.g ENSGT00940000165215.b.c ENSGT00940000164759.c ENSGT00940000158584.e ENSGT00940000155715.ob.a ENSGT00940000160595.a.a.b ##25 ENSGT00940000156981 ENSGT00940000157500.e ENSGT00940000158949.f ENSGT00390000009948.c.e ENSGT00940000155780.g ENSGT00390000000747.m Oncorhynchus_a ANCESTRAL SPECIES 1 ENSGT00950000182980.a.b.b.b.fc ENSGT00940000167263 ENSGT00940000158638.c ENSGT00940000154141.B.hb ENSGT00940000165391.e ENSGT00940000164285.a.b ENSGT00940000155970.z.b ENSGT00940000154537.lb.c ##26 ENSGT00600000084626.e ENSGT00940000160573.i ENSGT00390000007203 ENSGT00940000160735.b ENSGT00940000158240.o.a.a ENSGT00390000015226.d.i ENSGT00940000161547.a ENSGT01030000234549.a.b.g #22 ENSGT00940000164278.a #23 ENSGT00940000160175.b.b ##24 ENSGT00390000011408.r.b ENSGT00940000165215.a.g ENSGT00940000165215.b.c ENSGT00940000164759.c ENSGT00940000158584.e ENSGT00940000155715.ob.a ENSGT00940000160595.a.a.b ##25 ENSGT00940000156981 ENSGT00940000157500.e ENSGT00940000158949.f ENSGT00390000009948.c.e ENSGT00940000155780.g ENSGT00390000000747.m Chinook salmon MODERN SPECIES 30 ENSOTSG00005020052 calm2a (ENSOTSG00005020051) si:ch211-93n23.7 (ENSOTSG00005020050) TTC7A (ENSOTSG00005045631) mcfd2 (ENSOTSG00005045630) ENSOTSG00005045629 rhoq (ENSOTSG00005045627) mxtx1 (ENSOTSG00005045626) ##26 ENSOTSG00005045624 STK32C (ENSOTSG00005045461) ENSOTSG00005045458 PWWP2B (ENSOTSG00005045456) csad (ENSOTSG00005045122) INPP5A (ENSOTSG00005045087) nkx6.2 (ENSOTSG00005045086) valopa (ENSOTSG00005045085) #22 ENSOTSG00005045083 #23 ADGRA1 (ENSOTSG00005044945) ##24 KNDC1 (ENSOTSG00005044931) vox (ENSOTSG00005044929) ENSOTSG00005044927 ENSOTSG00005044926 dntt (ENSOTSG00005044826) ENSOTSG00005044824 ENSOTSG00005044823 ##25 CCNJ (ENSOTSG00005044822) BTAF1 (ENSOTSG00005044677) cpeb3 (ENSOTSG00005044646) marchf5 (ENSOTSG00005044644) ide (ENSOTSG00005044060) kmo (ENSOTSG00005044050) Coho salmon MODERN SPECIES 24 si:ch211-93n23.7 (ENSOKIG00005011548) TTC7A (ENSOKIG00005011519) ENSOKIG00005011497 socs5b (ENSOKIG00005011485) ENSOKIG00005011443 ENSOKIG00005011432 ##26 mcfd2 (ENSOKIG00005011417) ENSOKIG00005011401 ENSOKIG00005011149 LRRC27 (ENSOKIG00005011091) PWWP2B (ENSOKIG00005011077) csad (ENSOKIG00005010723) INPP5A (ENSOKIG00005010375) nkx6.2 (ENSOKIG00005010347) ENSOKIG00005010345 valopa (ENSOKIG00005010333) #22 ENSOKIG00005010320 ENSOKIG00005010310 #23 ADGRA1 (ENSOKIG00005010100) ##24 ENSOKIG00005010067 ENSOKIG00005010056 vox (ENSOKIG00005010048) ENSOKIG00005010043 ENSOKIG00005010036 dntt (ENSOKIG00005009711) ENSOKIG00005009650 ENSOKIG00005009640 ##25 CCNJ (ENSOKIG00005009635) BTAF1 (ENSOKIG00005008535) cpeb3 (ENSOKIG00005008299) marchf5 (ENSOKIG00005008211) Rainbow trout MODERN SPECIES calm2a (ENSOMYG00000025867) si:ch211-93n23.7 (ENSOMYG00000025740) TTC7A (ENSOMYG00000025716) mcfd2 (ENSOMYG00000025666) ENSOMYG00000025655 socs5b (ENSOMYG00000025644) ENSOMYG00000025627 ENSOMYG00000025603 ##26 ENSOMYG00000069861 STK32C (ENSOMYG00000025216) LRRC27 (ENSOMYG00000024922) PWWP2B (ENSOMYG00000024888) ENSOMYG00000024325 INPP5A (ENSOMYG00000023695) nkx6.2 (ENSOMYG00000023516) valopa (ENSOMYG00000023494) #22 ENSOMYG00000066860 ENSOMYG00000023469 #23 ADGRA1 (ENSOMYG00000023227) ##24 ENSOMYG00000063671 ENSOMYG00000023039 vox (ENSOMYG00000022992) ENSOMYG00000022970 ENSOMYG00000022960 dntt (ENSOMYG00000022843) ENSOMYG00000022758 ENSOMYG00000022726 ##25 ENSOMYG00000059912 ENSOMYG00000022716 ENSOMYG00000066160 BTAF1 (ENSOMYG00000017095) Huchen MODERN SPECIES 10 calm2a (ENSHHUG00000020730) si:ch211-93n23.7 (ENSHHUG00000020883) TTC7A (ENSHHUG00000020888) mcfd2 (ENSHHUG00000020904) ENSHHUG00000020907 socs5b (ENSHHUG00000020918) rhoq (ENSHHUG00000020923) mxtx1 (ENSHHUG00000020946) ##26 ENSHHUG00000020947 STK32C (ENSHHUG00000020972) LRRC27 (ENSHHUG00000021016) PWWP2B (ENSHHUG00000021051) csad (ENSHHUG00000021064) INPP5A (ENSHHUG00000021230) nkx6.2 (ENSHHUG00000021277) valopa (ENSHHUG00000021286) #22 ENSHHUG00000021300 #23 ENSHHUG00000021307 ENSHHUG00000021316 ##24 ADGRA1 (ENSHHUG00000021321) ##24 KNDC1 (ENSHHUG00000021340) vox (ENSHHUG00000021396) ENSHHUG00000021397 ENSHHUG00000021403 Salmoninae ANCESTRAL SPECIES 380 ENSGT00950000182980.a.b.b.b.ec ENSGT00940000158638.d ENSGT00940000154141.B.ib ENSGT00940000165391.f ENSGT00940000164285.a.a ENSGT00390000013481.c.b.b ENSGT00940000155970.z.a ENSGT00940000154537.lb.d ##26 ENSGT00390000016042 ENSGT00600000084626.f ENSGT00940000160573.j ENSGT00940000160735.a ENSGT00940000158240.o.b ENSGT00390000015226.d.j ENSGT00940000161547.b ENSGT01030000234549.a.b.h #22 ENSGT00570000079216 ENSGT00940000164278.b #23 ENSGT00940000160175.b.a ##24 ENSGT00390000011408.r.a ENSGT00940000165215.a.h ENSGT00940000165215.b.d ENSGT00940000164759.d Salmoninae_a ANCESTRAL SPECIES 16 ENSGT00950000182980.a.b.b.b.ec ENSGT00940000158638.d ENSGT00940000154141.B.ib ENSGT00940000165391.f ENSGT00940000164285.a.a ENSGT00390000013481.c.b.b ENSGT00940000155970.z.a ENSGT00940000154537.lb.d ##26 ENSGT00390000016042 ENSGT00600000084626.f ENSGT00940000160573.j ENSGT00940000160735.a ENSGT00940000158240.o.b ENSGT00390000015226.d.j ENSGT00940000161547.b ENSGT01030000234549.a.b.h #22 ENSGT00570000079216 ENSGT00940000164278.b #23 ENSGT00940000160175.b.a ##24 ENSGT00390000011408.r.a ENSGT00940000165215.a.h ENSGT00940000165215.b.d ENSGT00940000164759.d ENSGT00940000158584.f ENSGT00940000155715.ob.b ENSGT00940000160595.a.a.a ##25 ENSGT00940000157500.f ENSGT00940000158949.e ENSGT00390000009948.c.f ENSGT00940000155780.h ENSGT00390000000747.n Salmo ANCESTRAL SPECIES 23 ENSGT00950000182980.a.b.b.b.ec ENSGT00940000158638.d ENSGT00940000154141.B.ib ENSGT00970000197742 ENSGT00940000164285.a.a ENSGT00390000013481.c.b.b ENSGT00940000155970.z.a ENSGT00940000154537.lb.d ##26 ENSGT00390000016042 ENSGT00600000084626.f ENSGT00940000160573.j ENSGT00940000160735.a ENSGT00940000158240.o.b ENSGT00390000015226.d.j ENSGT00940000161547.b ENSGT01030000234549.a.b.h #22 ENSGT00570000079216 ENSGT00940000164278.b #23 ENSGT00940000160175.b.a ##24 ENSGT00390000011408.r.a ENSGT00940000165215.a.h ENSGT00940000165215.b.d ENSGT00940000164759.d ENSGT00940000158584.f ENSGT00940000155715.ob.b ENSGT00940000160595.a.a.a ##25 ENSGT00940000157500.f ENSGT00940000158949.e ENSGT00390000009948.c.f ENSGT00940000155780.h ENSGT00390000000747.n Atlantic salmon MODERN SPECIES calm2a (ENSSSAG00000001376) TTC7A (ENSSSAG00000001340) mcfd2 (ENSSSAG00000001329) prop1 (ENSSSAG00000001323) socs5b (ENSSSAG00000097820) ENSSSAG00000001313 rhoq (ENSSSAG00000001304) ENSSSAG00000121086 ##26 tmem254 (ENSSSAG00000001290) ENSSSAG00000001279 ENSSSAG00000001166 pwwp2b (ENSSSAG00000001133) ENSSSAG00000000768 nkx6.2 (ENSSSAG00000084986) INPP5A (ENSSSAG00000000258) valopa (ENSSSAG00000000113) #22 ENSSSAG00000110915 ENSSSAG00000086987 ENSSSAG00000112748 ENSSSAG00000091844 ENSSSAG00000031576 #23 ENSSSAG00000097660 ADGRA1 (ENSSSAG00000030734) ##24 KNDC1 (ENSSSAG00000029462) vox (ENSSSAG00000083961) ENSSSAG00000028855 ENSSSAG00000093236 dntt (ENSSSAG00000024940) blnk (ENSSSAG00000023874) ENSSSAG00000023736 ##25 BTAF1 (ENSSSAG00000015616) River trout MODERN SPECIES 9 calm2a (ENSSTUG00000012369) TTC7A (ENSSTUG00000012255) mcfd2 (ENSSTUG00000012244) prop1 (ENSSTUG00000012235) ENSSTUG00000012192 ENSSTUG00000012154 rhoq (ENSSTUG00000012127) mxtx1 (ENSSTUG00000012120) ##26 tmem254 (ENSSTUG00000012106) ENSSTUG00000012069 STK32C (ENSSTUG00000011947) PWWP2B (ENSSTUG00000011936) csad (ENSSTUG00000010245) INPP5A (ENSSTUG00000009965) nkx6.2 (ENSSTUG00000009952) valopa (ENSSTUG00000009926) #22 CFAP46 (ENSSTUG00000009803) ENSSTUG00000009781 #23 ADGRA1 (ENSSTUG00000009543) ##24 KNDC1 (ENSSTUG00000009511) vox (ENSSTUG00000009491) ENSSTUG00000009480 ENSSTUG00000009471 dntt (ENSSTUG00000009420) ENSSTUG00000009349 ENSSTUG00000009344 ##25 BTAF1 (ENSSTUG00000008964) cpeb3 (ENSSTUG00000008786) marchf5 (ENSSTUG00000008753) ide (ENSSTUG00000008606) kmo (ENSSTUG00000008056) Oncorhynchus ANCESTRAL SPECIES 17 ENSGT00950000182980.a.b.b.b.ec ENSGT00940000158638.d ENSGT00940000154141.B.ib ENSGT00940000165391.f ENSGT00940000164285.a.a ENSGT00390000013481.c.b.b ENSGT00940000155970.z.a ENSGT00940000154537.lb.d ##26 ENSGT00390000016042 ENSGT00600000084626.f ENSGT00940000160573.j ENSGT00940000160735.a ENSGT00940000158240.o.b ENSGT00390000015226.d.j ENSGT00940000161547.b ENSGT01030000234549.a.b.h #22 ENSGT00570000079216 ENSGT00940000164278.b #23 ENSGT00940000160175.b.a ##24 ENSGT00390000011408.r.a ENSGT01050000248004 ENSGT00940000164759.d ENSGT00940000158584.f ENSGT00940000155715.ob.b ENSGT00940000160595.a.a.a ##25 ENSGT00940000157500.f ENSGT00940000158949.e ENSGT00390000009948.c.f ENSGT00940000155780.h ENSGT00390000000747.n ENSGT01100000263502.A.a.b.l Oncorhynchus_a ANCESTRAL SPECIES 13 ENSGT00950000182980.a.b.b.b.ec ENSGT00940000158638.d ENSGT00940000154141.B.ib ENSGT00940000165391.f ENSGT00940000164285.a.a ENSGT00390000013481.c.b.b ENSGT00940000155970.z.a ENSGT00940000154537.lb.d ##26 ENSGT00390000016042 ENSGT00600000084626.f ENSGT00940000160573.j ENSGT00940000160735.a ENSGT00940000158240.o.b ENSGT00390000015226.d.j ENSGT00940000161547.b ENSGT01030000234549.a.b.h #22 ENSGT00570000079216 ENSGT00940000164278.b #23 ENSGT00940000160175.b.a ##24 ENSGT00390000011408.r.a ENSGT01050000248004 ENSGT00940000164759.d ENSGT00940000158584.f ENSGT00940000155715.ob.b ENSGT00940000160595.a.a.a ##25 ENSGT00940000157500.f ENSGT00940000158949.e ENSGT00390000009948.c.f ENSGT00940000155780.h ENSGT00390000000747.n ENSGT01100000263502.A.a.b.l Coho salmon MODERN SPECIES 2 TTC7A (ENSOKIG00005004215) mcfd2 (ENSOKIG00005004332) ENSOKIG00005004349 socs5b (ENSOKIG00005004398) ENSOKIG00005004413 rhoq (ENSOKIG00005004429) mxtx1 (ENSOKIG00005004453) ##26 tmem254 (ENSOKIG00005004484) ENSOKIG00005004508 STK32C (ENSOKIG00005004630) ENSOKIG00005005035 PWWP2B (ENSOKIG00005005038) CSAD (ENSOKIG00005005205) INPP5A (ENSOKIG00005006436) nkx6.2 (ENSOKIG00005006572) ENSOKIG00005006582 #22 ENSOKIG00005006605 ENSOKIG00005006617 ENSOKIG00005006632 #23 ADGRA1 (ENSOKIG00005006674) ##24 ENSOKIG00005006864 KNDC1 (ENSOKIG00005006900) ENSOKIG00005007052 dntt (ENSOKIG00005007086) ENSOKIG00005007277 ENSOKIG00005007291 ##25 BTAF1 (ENSOKIG00005007700) ENSOKIG00005014336 cpeb3 (ENSOKIG00005014347) marchf5 (ENSOKIG00005014405) ide (ENSOKIG00005014604) Chinook salmon MODERN SPECIES COX7A2L (ENSOTSG00005027872) KCNG3 (ENSOTSG00005027871) OXER1 (ENSOTSG00005027870) haao (ENSOTSG00005027868) mcfd2 (ENSOTSG00005027862) socs5b (ENSOTSG00005027859) ENSOTSG00005027858 rhoq (ENSOTSG00005027857) mxtx1 (ENSOTSG00005027855) ##26 tmem254 (ENSOTSG00005027854) ENSOTSG00005027852 STK32C (ENSOTSG00005027805) PWWP2B (ENSOTSG00005027801) csad (ENSOTSG00005027788) nkx6.2 (ENSOTSG00005026580) valopa (ENSOTSG00005026579) #22 CFAP46 (ENSOTSG00005026545) ENSOTSG00005026538 #23 ADGRA1 (ENSOTSG00005026239) ##24 KNDC1 (ENSOTSG00005026238) ENSOTSG00005026237 ENSOTSG00005026236 dntt (ENSOTSG00005026087) ENSOTSG00005026077 ENSOTSG00005026075 ##25 BTAF1 (ENSOTSG00005013547) cpeb3 (ENSOTSG00005013517) marchf5 (ENSOTSG00005013483) ide (ENSOTSG00005010418) kmo (ENSOTSG00005010414) opn3 (ENSOTSG00005010413) Rainbow trout MODERN SPECIES 15 ENSOMYG00000077054 socs5b (ENSOMYG00000012267) ENSOMYG00000012258 ENSOMYG00000012239 ENSOMYG00000074589 ##26 ENSOMYG00000012225 ENSOMYG00000012186 ENSOMYG00000046908 PWWP2B (ENSOMYG00000046890) ENSOMYG00000063531 ENSOMYG00000071412 ENSOMYG00000046762 ENSOMYG00000046658 INPP5A (ENSOMYG00000046634) nkx6.2 (ENSOMYG00000046587) valopa (ENSOMYG00000046581) #22 ENSOMYG00000067629 CFAP46 (ENSOMYG00000046576) ENSOMYG00000046569 #23 ADGRA1 (ENSOMYG00000046554) ##24 KNDC1 (ENSOMYG00000046549) ENSOMYG00000046545 ENSOMYG00000046540 dntt (ENSOMYG00000046435) ENSOMYG00000046395 ENSOMYG00000046390 ##25 BTAF1 (ENSOMYG00000046322) cpeb3 (ENSOMYG00000046254) marchf5 (ENSOMYG00000046225) ide (ENSOMYG00000045287) ENSOMYG00000055482 Huchen MODERN SPECIES 131 csad (ENSHHUG00000016711) INPP5A (ENSHHUG00000015968) nkx6.2 (ENSHHUG00000015959) valopa (ENSHHUG00000015921) #22 CFAP46 (ENSHHUG00000015877) ENSHHUG00000015863 ENSHHUG00000015858 #23 ENSHHUG00000015846 ADGRA1 (ENSHHUG00000015814) ##24 KNDC1 (ENSHHUG00000015769) ENSHHUG00000015757 ENSHHUG00000015752 Northern pike MODERN SPECIES 5 mmrn2a (ENSELUG00000018134) bmpr1aa (ENSELUG00000000746) ldb3a (ENSELUG00000018300) opn4a (ENSELUG00000018351) ENSELUG00000018363 rhoq (ENSELUG00000018425) mxtx1 (ENSELUG00000018433) ##26 tmem254 (ENSELUG00000018474) ENSELUG00000000793 STK32C (ENSELUG00000018549) LRRC27 (ENSELUG00000018588) PWWP2B (ENSELUG00000018627) csad (ENSELUG00000018621) INPP5A (ENSELUG00000018638) nkx6.2 (ENSELUG00000018652) valopa (ENSELUG00000000799) #22 ENSELUG00000033745 ENSELUG00000018688 ENSELUG00000018790 #23 ENSELUG00000026913 ADGRA1 (ENSELUG00000018861) ##24 KNDC1 (ENSELUG00000018893) vox (ENSELUG00000018912) ENSELUG00000018928 ENSELUG00000018930 ENSELUG00000033875 dntt (ENSELUG00000018977) blnk (ENSELUG00000019076) ENSELUG00000019106 ##25 CCNJ (ENSELUG00000019131) BTAF1 (ENSELUG00000019205) Osteoglossiformes ANCESTRAL SPECIES 18 ENSGT00940000157425.B ENSGT00940000158482 ENSGT00390000008978 ENSGT00390000008787.b ENSGT00940000159235.a ENSGT00940000154537.lb ##26 ENSGT00600000084626 ENSGT00940000160573.c ENSGT00940000160735 ENSGT00390000015226.d ENSGT00940000161547 ENSGT01030000234549.a.b #22 ENSGT00570000079216 ENSGT00940000164278 #23 ENSGT00940000160175.b ##24 ENSGT00390000011408 ENSGT00940000165215.a ENSGT00940000165215.b ENSGT00940000164759 ENSGT00940000158584 ENSGT00940000155715 ENSGT00940000162006 ENSGT00940000156981 ENSGT00940000157500 ENSGT00940000158949 ENSGT00390000009948.c ENSGT00940000155780 P. kingsleyae DUPLICATION P. kingsleyae MODERN SPECIES 11 tysnd1 (ENSPKIG00000018909) hif1an (ENSPKIG00000018875) rgra (ENSPKIG00000018846) cuedc2 (ENSPKIG00000018810) emx2 (ENSPKIG00000018768) RAB11FIP2 (ENSPKIG00000018743) ENSPKIG00000018724 fam204a (ENSPKIG00000018710) ENSPKIG00000018680 tspan14 (ENSPKIG00000018636) ENSPKIG00000018601 ##26 STK32C (ENSPKIG00000018578) PWWP2B (ENSPKIG00000018566) INPP5A (ENSPKIG00000018494) nkx6.2 (ENSPKIG00000018453) valopa (ENSPKIG00000018441) #22 ENSPKIG00000018424 ENSPKIG00000018388 ENSPKIG00000018358 #23 ENSPKIG00000018341 ADGRA1 (ENSPKIG00000018232) ##24 KNDC1 (ENSPKIG00000018104) ENSPKIG00000018064 P. kingsleyae MODERN SPECIES 18 ENSPKIG00000008070 ##29 SH2D4B (ENSPKIG00000008088) #28 TSPAN14 (ENSPKIG00000008121) bms1 (ENSPKIG00000008165) #27 mxtx2 (ENSPKIG00000008236) #26 tmem254 (ENSPKIG00000008259) STK32C (ENSPKIG00000008332) valopb (ENSPKIG00000008500) #22 ENSPKIG00000008530 #24 ENSPKIG00000008543 ENSPKIG00000008554 PLA2G12B (ENSPKIG00000008564) abcg2c (ENSPKIG00000008594) pigf (ENSPKIG00000008632) cript (ENSPKIG00000008644) calm2a (ENSPKIG00000008660) epcam (ENSPKIG00000008710) msh2 (ENSPKIG00000008812) ENSPKIG00000008978 ENSPKIG00000009288 COX7A2L (ENSPKIG00000009622) KCNG3 (ENSPKIG00000009631) mta3 (ENSPKIG00000009654) Asian bonytongue DUPLICATION Asian bonytongue MODERN SPECIES 23 trmt2b (ENSSFOG00015006392) prdx3 (ENSSFOG00015006374) eif3s10 (ENSSFOG00015006358) emx2 (ENSSFOG00015006336) RAB11FIP2 (ENSSFOG00015006324) fam204a (ENSSFOG00015006287) ENSSFOG00015006266 ENSSFOG00015030926 #29 tspan14 (ENSSFOG00015006187) ENSSFOG00015006171 ##26 ENSSFOG00015006147 STK32C (ENSSFOG00015006082) PWWP2B (ENSSFOG00015027814) INPP5A (ENSSFOG00015005987) nkx6.2 (ENSSFOG00015005965) valopa (ENSSFOG00015028454) #22 ENSSFOG00015005888 ENSSFOG00015005847 #23 ADGRA1 (ENSSFOG00015005403) ##24 KNDC1 (ENSSFOG00015005368) ENSSFOG00015026441 ENSSFOG00015005340 ENSSFOG00015005329 dntt (ENSSFOG00015005270) blnk (ENSSFOG00015005217) ENSSFOG00015005190 #25 CCNJ (ENSSFOG00015005168) BTAF1 (ENSSFOG00015005016) cpeb3 (ENSSFOG00015004974) marchf5 (ENSSFOG00015004930) ide (ENSSFOG00015004874) Asian bonytongue DUPLICATION Asian bonytongue MODERN SPECIES 18 valopb (ENSSFOG00015026361) #22 gabrz (ENSSFOG00015022397) #23 ENSSFOG00015027787 ENSSFOG00015026508 PLA2G12B (ENSSFOG00015026901) ENSSFOG00015015369 ENSSFOG00015028052 ENSSFOG00015026266 ENSSFOG00015005237 ENSSFOG00015026247 ENSSFOG00015022424 ENSSFOG00015027491 ENSSFOG00015032839 abcg2b (ENSSFOG00015015601) zgc:63470 (ENSSFOG00015027886) valopb (ENSSFOG00015025873) #22 ENSSFOG00015026273 #23 ENSSFOG00015029854 PLA2G12B (ENSSFOG00015025372) ENSSFOG00015025732 ENSSFOG00015024637 ENSSFOG00015005611 ENSSFOG00015032873 ENSSFOG00015028729 zgc:63470 (ENSSFOG00015015590) rbm4.3 (ENSSFOG00015015563) pmt (ENSSFOG00015015493) cnot8 (ENSSFOG00015015453) ENSSFOG00015014927 tbx20 (ENSSFOG00015014861) PTPN21 (ENSSFOG00015014833) Asian bonytongue MODERN SPECIES 18 VWA2 (ENSSFOG00015022036) AFAP1L2 (ENSSFOG00015022052) #34 KBTBD13 (ENSSFOG00015022069) #35 ablim1b (ENSSFOG00015022079) #33 fhip2a (ENSSFOG00015022105) trub1 (ENSSFOG00015022124) #32 ATRNL1 (ENSSFOG00015022150) #31 gfra1b (ENSSFOG00015022242) #30 ENSSFOG00015022263 #29 SH2D4B (ENSSFOG00015022271) #28 TSPAN14 (ENSSFOG00015022284) bms1 (ENSSFOG00015022313) #27 mxtx2 (ENSSFOG00015022353) #26 tmem254 (ENSSFOG00015030941) STK32C (ENSSFOG00015022367) valopb (ENSSFOG00015026361) #22 gabrz (ENSSFOG00015022397) #23 ENSSFOG00015027787 ENSSFOG00015026508 PLA2G12B (ENSSFOG00015026901) ENSSFOG00015015369 ENSSFOG00015028052 ENSSFOG00015026266 ENSSFOG00015005237 ENSSFOG00015026247 ENSSFOG00015022424 ENSSFOG00015027491 ENSSFOG00015032839 abcg2b (ENSSFOG00015015601) zgc:63470 (ENSSFOG00015027886) valopb (ENSSFOG00015025873) #22 Spotted gar MODERN SPECIES 671 PTPRE (ENSLOCG00000007653) ENSLOCG00000007643 MGMT (ENSLOCG00000007632) ebf3a (ENSLOCG00000007615) glrx3 (ENSLOCG00000007580) TCERG1L (ENSLOCG00000007558) ppp2r2d (ENSLOCG00000007541) bnip3 (ENSLOCG00000007528) JAKMIP3 (ENSLOCG00000007499) dpysl4 (ENSLOCG00000007471) STK32C (ENSLOCG00000007451) LRRC27 (ENSLOCG00000007441) PWWP2B (ENSLOCG00000007432) INPP5A (ENSLOCG00000007409) nkx6.2 (ENSLOCG00000007395) valopb (ENSLOCG00000007383) #22 ENSLOCG00000007373 CFAP46 (ENSLOCG00000007359) gabrz (ENSLOCG00000007338) #23 ADGRA1 (ENSLOCG00000007306) ##24 KNDC1 (ENSLOCG00000007289) vox (ENSLOCG00000007276) ENSLOCG00000018236 dntt (ENSLOCG00000007264) blnk (ENSLOCG00000007223) ZNF518A (ENSLOCG00000018235) CCNJ (ENSLOCG00000007212) ENSLOCG00000007195 BTAF1 (ENSLOCG00000007169) cpeb3 (ENSLOCG00000007131) marchf5 (ENSLOCG00000007112) Reedfish MODERN SPECIES 10 foxi1 (ENSECRG00000009638) CLRN3 (ENSECRG00000009659) PTPRE (ENSECRG00000009682) ENSECRG00000009728 MGMT (ENSECRG00000009749) ebf3a (ENSECRG00000009768) glrx3 (ENSECRG00000009843) ppp2r2d (ENSECRG00000009895) bnip3 (ENSECRG00000010103) JAKMIP3 (ENSECRG00000010115) dpysl4 (ENSECRG00000010136) STK32C (ENSECRG00000010168) PWWP2B (ENSECRG00000010194) INPP5A (ENSECRG00000010209) nkx6.2 (ENSECRG00000010230) valopb (ENSECRG00000010242) #22 ENSECRG00000010254 ENSECRG00000010263 gabrz (ENSECRG00000010274) #23 ADGRA1 (ENSECRG00000010289) ##24 ENSECRG00000010300 ENSECRG00000010313 ENSECRG00000010308 vox (ENSECRG00000010317) ENSECRG00000010321 ENSECRG00000010327 dntt (ENSECRG00000010384) ENSECRG00000010509 ZNF518A (ENSECRG00000000433) ENSECRG00000000462 CCNJ (ENSECRG00000000521) Sarcopterygii ANCESTRAL SPECIES 13 ENSGT00940000156570.a ENSGT00940000154352.A ENSGT00390000015799 ENSGT00950000182859.A.b ENSGT00550000075030 ENSGT00940000160593 ENSGT00950000182864.a.a ENSGT00390000013415.a.a ENSGT00940000153713.E ENSGT01030000234527.A.a.b.a.b ENSGT00940000160573 ENSGT00390000007203 ENSGT00940000160735 ENSGT00390000015226.d ENSGT00940000161547 ENSGT01030000234549.a.b #22 ENSGT00570000079216 ENSGT00940000164278 #23 ENSGT00940000160175.b ##24 ENSGT00390000011408 ENSGT00940000165215 ENSGT00940000164759 ENSGT00940000158584 ENSGT00940000156981 ENSGT00940000156590 ENSGT00940000155847 ENSGT00940000157500 ENSGT00940000158949 ENSGT00390000009948.c ENSGT00940000155780 ENSGT00940000155921 Tetrapoda ANCESTRAL SPECIES 17 ENSGT00940000156570.a ENSGT00940000154352.A ENSGT00390000015799 ENSGT00950000182859.A.b ENSGT00550000075030 ENSGT00940000160593 ENSGT00950000182864.a.a ENSGT00390000013415.a.a ENSGT00940000153713.E ENSGT01030000234527.A.a.b.a.b ENSGT00940000160573 ENSGT00390000007203 ENSGT00940000160735 ENSGT00390000015226.d ENSGT00940000161547 ENSGT01030000234549.a.b #22 ENSGT00570000079216 ENSGT00940000164278 #23 ENSGT00940000160175.b ##24 ENSGT00390000011408 ENSGT00940000165215 ENSGT00940000164759 ENSGT00940000158584 ENSGT00940000155715 ENSGT00940000162006 ENSGT00940000156981 ENSGT00940000156590 ENSGT00940000155847 ENSGT00940000157500 ENSGT00940000158949 ENSGT00390000009948.c Amniota ANCESTRAL SPECIES 10 ENSGT00850000132319.b ENSGT00940000156570.a ENSGT00390000015799 ENSGT00950000182859.A.b ENSGT00550000075030 ENSGT00940000160593 ENSGT00950000182864.a.a ENSGT00390000013415.a.a ENSGT00940000153713.E ENSGT01030000234527.A.a.b.a.b ENSGT00940000160573 ENSGT00390000007203 ENSGT00940000160735 ENSGT00390000015226.d ENSGT00940000161547 ENSGT01030000234549.a.b #22 ENSGT00570000079216 ENSGT00940000164278 #23 ENSGT00940000160175.b ##24 ENSGT00390000011408 ENSGT00940000163757 ENSGT00940000165215 ENSGT00940000164759 ENSGT00940000158584 ENSGT00940000155715 ENSGT00940000162006 ENSGT00940000156981 ENSGT00940000156590 ENSGT00940000155847 ENSGT00940000157500 ENSGT00940000158949 Sauria ANCESTRAL SPECIES 8 ENSGT00850000132319.b ENSGT00940000156570.a ENSGT00390000015799 ENSGT00950000182859.A.b ENSGT00550000075030 ENSGT00940000160593 ENSGT00950000182864.a.a ENSGT00390000013415.a.a ENSGT00940000153713.E ENSGT01030000234527.A.a.b.a.b ENSGT00940000160573 ENSGT00390000007203 ENSGT00940000160735 ENSGT00390000015226.d ENSGT00940000161547 ENSGT01030000234549.a.b #22 ENSGT00570000079216 ENSGT00940000164278 #23 ENSGT00940000160175.b ##24 ENSGT00390000011408 ENSGT00940000163757 ENSGT00940000165215 ENSGT00940000164759 ENSGT00940000158584 ENSGT00940000155715 ENSGT00940000162006 ENSGT00940000156981 ENSGT00940000156590 ENSGT00940000157500 ENSGT00940000158949 ENSGT00390000009948.c Archelosauria ANCESTRAL SPECIES 10 ENSGT00850000132319.b ENSGT00940000156570.a ENSGT00390000015799 ENSGT00950000182859.A.b ENSGT00550000075030 ENSGT00940000160593 ENSGT00950000182864.a.a ENSGT00390000013415.a.a ENSGT00940000153713.E ENSGT01030000234527.A.a.b.a.b ENSGT00940000160573 ENSGT00390000007203 ENSGT00940000160735 ENSGT00390000015226.d ENSGT00940000161547 ENSGT01030000234549.a.b #22 ENSGT00570000079216 ENSGT00940000164278 #23 ENSGT00940000160175.b ##24 ENSGT00390000011408 ENSGT00940000163757 ENSGT00940000165097.b ENSGT00940000165097.a ENSGT00940000165215 ENSGT00940000164759 ENSGT00940000158584 ENSGT00940000155715 ENSGT00940000162006 ENSGT00940000156981 ENSGT00940000156590 ENSGT00940000155847 Archosauria ANCESTRAL SPECIES 7 ENSGT00850000132319.b ENSGT00940000156570.a ENSGT00390000015799 ENSGT00950000182859.A.b ENSGT00550000075030 ENSGT00940000160593 ENSGT00950000182864.a.a ENSGT00390000013415.a.a ENSGT00940000153713.E ENSGT01030000234527.A.a.b.a.b ENSGT00940000160573 ENSGT00390000007203 ENSGT00940000160735 ENSGT00390000015226.d ENSGT00940000161547 ENSGT01030000234549.a.b #22 ENSGT00570000079216 Aves ANCESTRAL SPECIES 6 ENSGT00850000132319.b ENSGT00940000156570.a ENSGT00390000015799 ENSGT00950000182859.A.b ENSGT00550000075030 ENSGT00940000160593 ENSGT00950000182864.a.a ENSGT00390000013415.a.a ENSGT00940000153713.E ENSGT01030000234527.A.a.b.a.b ENSGT00940000160573 ENSGT00390000007203 ENSGT00940000160735 ENSGT00390000015226.d ENSGT00940000161547 ENSGT01030000234549.a.b #22 ENSGT00570000079216 ENSGT00570000079101.a.a ENSGT00500000044903 Neognathae ANCESTRAL SPECIES 7 ENSGT00850000132319.b ENSGT00940000156570.a ENSGT00390000015799 ENSGT00950000182859.A.b ENSGT00550000075030 ENSGT00940000160593 ENSGT00950000182864.a.a ENSGT00390000013415.a.a ENSGT00940000153713.E ENSGT01030000234527.A.a.b.a.b ENSGT00940000160573 ENSGT00390000007203 ENSGT00940000160735 ENSGT00390000015226.d ENSGT00940000161547 ENSGT01030000234549.a.b #22 ENSGT00570000079216 ENSGT00570000079101.a.a ENSGT00500000044903 Galloanserae ANCESTRAL SPECIES 6 ENSGT00850000132319.b ENSGT00940000156570.a ENSGT00390000015799 ENSGT00950000182859.A.b ENSGT00550000075030 ENSGT00940000160593 ENSGT00950000182864.a.a ENSGT00390000013415.a.a ENSGT00940000153713.E ENSGT01030000234527.A.a.b.a.b ENSGT00940000160573 ENSGT00390000007203 ENSGT00940000160735 ENSGT00390000015226.d ENSGT00940000161547 ENSGT01030000234549.a.b #22 ENSGT00570000079216 ENSGT00570000079101.a.a ENSGT00500000044903 Anatidae ANCESTRAL SPECIES 4 ENSGT00850000132319.b ENSGT00940000156570.a ENSGT00390000015799 ENSGT00950000182859.A.b ENSGT00550000075030 ENSGT00940000160593 ENSGT00950000182864.a.a ENSGT00390000013415.a.a ENSGT00940000153713.E ENSGT01030000234527.A.a.b.a.b ENSGT00940000160573 ENSGT00390000007203 ENSGT00940000160735 ENSGT00390000015226.d ENSGT00940000161547 ENSGT01030000234549.a.b #22 ENSGT00570000079216 ENSGT00570000079101.a.a ENSGT00500000044903 Duck MODERN SPECIES 24 CLRN3 (ENSAPLG00000023018) PTPRE (ENSAPLG00000009861) MGMT (ENSAPLG00000030688) ENSAPLG00000012647 GLRX3 (ENSAPLG00000012790) TCERG1L (ENSAPLG00000012399) PPP2R2D (ENSAPLG00000006225) BNIP3 (ENSAPLG00000005950) JAKMIP3 (ENSAPLG00000003318) DPYSL4 (ENSAPLG00000003668) STK32C (ENSAPLG00000004989) ENSAPLG00000018848 LRRC27 (ENSAPLG00000023192) PWWP2B (ENSAPLG00000005281) INPP5A (ENSAPLG00000005286) ENSAPLG00000005542 #22 ENSAPLG00000006027 TCTN3 (ENSAPLG00000006229) ALDH18A1 (ENSAPLG00000006363) Pink-footed goose MODERN SPECIES 429 INPP5A (ENSABRG00000009429) NKX6-2 (ENSABRG00000009610) ENSABRG00000009632 #22 TCTN3 (ENSABRG00000009667) ALDH18A1 (ENSABRG00000009704) Phasianidae ANCESTRAL SPECIES 6 ENSGT00400000024769 ENSGT00850000132319.b ENSGT00940000156570.a ENSGT00390000015799 ENSGT00950000182859.A.b ENSGT00550000075030 ENSGT00940000160593 ENSGT00950000182864.a.a ENSGT00390000013415.a.a ENSGT00940000153713.E ENSGT01030000234527.A.a.b.a.b ENSGT00940000160573 ENSGT00940000160735 ENSGT00390000015226.d ENSGT00940000161547 ENSGT01030000234549.a.b #22 ENSGT00570000079101.a.a ENSGT00500000044903 Phasianidae_b ANCESTRAL SPECIES 6 ENSGT00400000024769 ENSGT00850000132319.b ENSGT00940000156570.a ENSGT00390000015799 ENSGT00950000182859.A.b ENSGT00550000075030 ENSGT00940000160593 ENSGT00950000182864.a.a ENSGT00390000013415.a.a ENSGT00940000153713.E ENSGT01030000234527.A.a.b.a.b ENSGT00940000160573 ENSGT00940000160735 ENSGT00390000015226.d ENSGT00940000161547 ENSGT01030000234549.a.b #22 ENSGT00570000079101.a.a ENSGT00500000044903 Chicken MODERN SPECIES 35 CLRN3 (ENSGALG00010002617) PTPRE (ENSGALG00010002712) ENSGALG00010002750 MGMT (ENSGALG00010001308) EBF3 (ENSGALG00010001334) GLRX3 (ENSGALG00010001353) TCERG1L (ENSGALG00010001358) PPP2R2D (ENSGALG00010001369) BNIP3 (ENSGALG00010001382) JAKMIP3 (ENSGALG00010001480) DPYSL4 (ENSGALG00010001506) STK32C (ENSGALG00010001527) PWWP2B (ENSGALG00010001547) INPP5A (ENSGALG00010001567) NKX6-2 (ENSGALG00010001577) OPNVA (ENSGALG00010001616) #22 TCTN3 (ENSGALG00010001661) ALDH18A1 (ENSGALG00010001692) Turkey MODERN SPECIES 28 ENSMGAG00000011398 BAG3 (ENSMGAG00000011390) ENSMGAG00000011368 ENSMGAG00000017692 ENSMGAG00000011359 ENSMGAG00000011341 ENSMGAG00000011337 ENSMGAG00000011324 ENSMGAG00000011328 ENSMGAG00000011305 ENSMGAG00000011298 ENSMGAG00000015338 ENSMGAG00000011290 ENSMGAG00000011914 ENSMGAG00000011912 ENSMGAG00000011907 #22 ENSMGAG00000015341 ENSMGAG00000011899 ENSMGAG00000011859 ENSMGAG00000011869 JAKMIP3 (ENSMGAG00000011861) ENSMGAG00000019998 ENSMGAG00000011837 ENSMGAG00000011844 GLRX3 (ENSMGAG00000012648) ENSMGAG00000016563 ENSMGAG00000011826 Japanese quail MODERN SPECIES 24 CLRN3 (ENSCJPG00005001282) PTPRE (ENSCJPG00005001286) ENSCJPG00005001294 MGMT (ENSCJPG00005001320) EBF3 (ENSCJPG00005001333) GLRX3 (ENSCJPG00005001349) TCERG1L (ENSCJPG00005001381) PPP2R2D (ENSCJPG00005001393) ENSCJPG00005001397 JAKMIP3 (ENSCJPG00005001465) DPYSL4 (ENSCJPG00005001567) STK32C (ENSCJPG00005004188) PWWP2B (ENSCJPG00005004191) INPP5A (ENSCJPG00005004193) NKX6-2 (ENSCJPG00005004206) ENSCJPG00005004208 #22 ENSCJPG00005004209 ALDH18A1 (ENSCJPG00005004248) Neognathae_b ANCESTRAL SPECIES 8 ENSGT00850000132319.b ENSGT00940000156570.a ENSGT00390000015799 ENSGT00950000182859.A.b ENSGT00550000075030 ENSGT00940000160593 ENSGT00950000182864.a.a ENSGT00390000013415.a.a ENSGT00940000153713.E ENSGT01030000234527.A.a.b.a.b ENSGT00940000160573 ENSGT00390000007203 ENSGT00940000160735 ENSGT00390000015226.d ENSGT00940000161547 ENSGT01030000234549.a.b #22 ENSGT00570000079216 ENSGT00570000079101.a.a ENSGT00500000044903 Passeriformes ANCESTRAL SPECIES 10 ENSGT00940000170313 ENSGT00850000132319.b ENSGT00940000156570.a ENSGT00390000015799 ENSGT00950000182859.A.b ENSGT00550000075030 ENSGT00940000160593 ENSGT00950000182864.a.a ENSGT00390000013415.a.a ENSGT00940000153713.E ENSGT01030000234527.A.a.b.a.b ENSGT00940000160573 ENSGT00940000160735 ENSGT00390000015226.d ENSGT00940000161547 ENSGT01030000234549.a.b #22 ENSGT00570000079216 ENSGT00570000079101.a.a ENSGT00500000044903 ENSGT00550000074897 Great tit MODERN SPECIES 26 EBF3 (ENSPMJG00000005976) ENSPMJG00000005982 TCERG1L (ENSPMJG00000005986) ENSPMJG00000005989 ENSPMJG00000005996 GLRX3 (ENSPMJG00000006006) ENSPMJG00000006022 ENSPMJG00000006025 BNIP3 (ENSPMJG00000006026) JAKMIP3 (ENSPMJG00000006028) DPYSL4 (ENSPMJG00000006037) STK32C (ENSPMJG00000006041) ENSPMJG00000006106 INPP5A (ENSPMJG00000006120) NKX6-2 (ENSPMJG00000006128) ENSPMJG00000006130 #22 ENSPMJG00000006139 ENSPMJG00000006140 TCTN3 (ENSPMJG00000006142) ALDH18A1 (ENSPMJG00000006143) MSH4 (ENSPMJG00000006147) Passeriformes_d ANCESTRAL SPECIES 7 ENSGT00940000170313 ENSGT00850000132319.b ENSGT00940000156570.a ENSGT00390000015799 ENSGT00950000182859.A.b ENSGT00550000075030 ENSGT00940000160593 ENSGT00950000182864.a.a ENSGT00390000013415.a.a ENSGT00940000153713.E ENSGT01030000234527.A.a.b.a.b ENSGT00940000160573 ENSGT00940000160735 ENSGT00390000015226.d ENSGT00940000161547 ENSGT01030000234549.a.b #22 ENSGT00570000079216 ENSGT00570000079101.a.a ENSGT00500000044903 ENSGT00550000074897 Passeriformes_g ANCESTRAL SPECIES 8 ENSGT00850000132319.b ENSGT00940000156570.a ENSGT00390000015799 ENSGT00950000182859.A.b ENSGT00550000075030 ENSGT00940000160593 ENSGT00950000182864.a.a ENSGT00390000013415.a.a ENSGT00940000153713.E ENSGT01030000234527.A.a.b.a.b ENSGT00940000160573.b ENSGT00940000160573.a ENSGT00940000160735 ENSGT00390000015226.d ENSGT00940000161547 ENSGT01030000234549.a.b #22 ENSGT00570000079216 ENSGT00570000079101.a.a ENSGT00500000044903 ENSGT00550000074897 Medium ground finch MODERN SPECIES 209 GLRX3 (ENSGFOG00000012943) TCERG1L (ENSGFOG00000012940) PPP2R2D (ENSGFOG00000012930) ENSGFOG00000012926 ENSGFOG00000012923 JAKMIP3 (ENSGFOG00000012917) DPYSL4 (ENSGFOG00000012910) STK32C (ENSGFOG00000012902) INPP5A (ENSGFOG00000012867) NKX6-2 (ENSGFOG00000012858) ENSGFOG00000012853 #22 ENSGFOG00000012845 ENSGFOG00000012834 TCTN3 (ENSGFOG00000012822) ALDH18A1 (ENSGFOG00000012654) MSH4 (ENSGFOG00000012630) Passeroidea ANCESTRAL SPECIES 7 ENSGT00940000170313 ENSGT00850000132319.b ENSGT00940000156570.a ENSGT00390000015799 ENSGT00950000182859.A.b ENSGT00550000075030 ENSGT00940000160593 ENSGT00950000182864.a.a ENSGT00390000013415.a.a ENSGT00940000153713.E ENSGT01030000234527.A.a.b.a.b ENSGT00940000160573.a ENSGT00940000160735 ENSGT00390000015226.d ENSGT00940000161547 ENSGT01030000234549.a.b #22 ENSGT00570000079216 ENSGT00570000079101.a.a ENSGT00500000044903 ENSGT00550000074897 Zebra finch MODERN SPECIES 28 BNIP3 (ENSTGUG00000022111) ENSTGUG00000011644 ENSTGUG00000011657 ENSTGUG00000011662 ENSTGUG00000011674 ENSTGUG00000020450 ENSTGUG00000011634 ENSTGUG00000025290 ENSTGUG00000021176 ENSTGUG00000027640 ENSTGUG00000022770 ENSTGUG00000029017 ENSTGUG00000025617 INPP5A (ENSTGUG00000011675) NKX6-2 (ENSTGUG00000011692) ENSTGUG00000011694 #22 ENSTGUG00000026788 ENSTGUG00000011696 ALDH18A1 (ENSTGUG00000011707) MSH4 (ENSTGUG00000010473) Common canary MODERN SPECIES 7 ENSSCAG00000010598 MGMT (ENSSCAG00000010591) EBF3 (ENSSCAG00000010428) GLRX3 (ENSSCAG00000010380) ENSSCAG00000010378 TCERG1L (ENSSCAG00000010367) ENSSCAG00000010361 PPP2R2D (ENSSCAG00000010356) BNIP3 (ENSSCAG00000010352) JAKMIP3 (ENSSCAG00000010331) DPYSL4 (ENSSCAG00000010192) STK32C (ENSSCAG00000010150) ENSSCAG00000010141 INPP5A (ENSSCAG00000010070) NKX6-2 (ENSSCAG00000010038) ENSSCAG00000010025 #22 ENSSCAG00000010010 TCTN3 (ENSSCAG00000009979) ALDH18A1 (ENSSCAG00000009961) MSH4 (ENSSCAG00000009902) Flycatcher MODERN SPECIES 25 MGMT (ENSFALG00000001209) EBF3 (ENSFALG00000001212) GLRX3 (ENSFALG00000001218) TCERG1L (ENSFALG00000027291) ENSFALG00000023916 PPP2R2D (ENSFALG00000001234) BNIP3 (ENSFALG00000001247) ENSFALG00000023307 JAKMIP3 (ENSFALG00000001258) ENSFALG00000001278 DPYSL4 (ENSFALG00000027125) STK32C (ENSFALG00000001306) ENSFALG00000022932 INPP5A (ENSFALG00000001313) NKX6-2 (ENSFALG00000001316) ENSFALG00000001323 #22 ENSFALG00000027003 ENSFALG00000001338 ENSFALG00000001351 ENSFALG00000001353 Neognathae_c ANCESTRAL SPECIES 8 ENSGT00850000132319.b ENSGT00940000156570.a ENSGT00390000015799 ENSGT00950000182859.A.b ENSGT00550000075030 ENSGT00940000160593 ENSGT00950000182864.a.a ENSGT00390000013415.a.a ENSGT00940000153713.E ENSGT01030000234527.A.a.b.a.b ENSGT00940000160573 ENSGT00390000007203 ENSGT00940000160735 ENSGT00390000015226.d ENSGT00940000161547 ENSGT01030000234549.a.b #22 ENSGT00570000079216 ENSGT00570000079101.a.a ENSGT00500000044903 Kakapo MODERN SPECIES 22 ENSSHBG00005007545 ENSSHBG00005007566 MGMT (ENSSHBG00005007589) EBF3 (ENSSHBG00005007619) GLRX3 (ENSSHBG00005007676) TCERG1L (ENSSHBG00005007703) PPP2R2D (ENSSHBG00005007723) BNIP3 (ENSSHBG00005007749) JAKMIP3 (ENSSHBG00005007771) DPYSL4 (ENSSHBG00005007798) STK32C (ENSSHBG00005007817) ENSSHBG00005007862 PWWP2B (ENSSHBG00005007882) INPP5A (ENSSHBG00005007898) NKX6-2 (ENSSHBG00005007927) ENSSHBG00005007953 #22 ENSSHBG00005000327 TCTN3 (ENSSHBG00005000332) ALDH18A1 (ENSSHBG00005000335) Golden eagle MODERN SPECIES 2 CLRN3 (ENSACCG00020005951) PTPRE (ENSACCG00020005933) MGMT (ENSACCG00020005905) EBF3 (ENSACCG00020005883) GLRX3 (ENSACCG00020005849) TCERG1L (ENSACCG00020005831) PPP2R2D (ENSACCG00020005812) BNIP3 (ENSACCG00020005794) JAKMIP3 (ENSACCG00020005746) DPYSL4 (ENSACCG00020005629) STK32C (ENSACCG00020005571) LRRC27 (ENSACCG00020005494) PWWP2B (ENSACCG00020005473) INPP5A (ENSACCG00020005453) NKX6-2 (ENSACCG00020005430) ENSACCG00020005416 #22 ENSACCG00020005371 TCTN3 (ENSACCG00020005331) ALDH18A1 (ENSACCG00020005309) African ostrich MODERN SPECIES 463 ENSSCUG00000007692 MGMT (ENSSCUG00000007684) ENSSCUG00000007680 ENSSCUG00000007676 GLRX3 (ENSSCUG00000007671) TCERG1L (ENSSCUG00000007664) ENSSCUG00000007658 PPP2R2D (ENSSCUG00000007655) BNIP3 (ENSSCUG00000007653) JAKMIP3 (ENSSCUG00000007646) DPYSL4 (ENSSCUG00000007637) STK32C (ENSSCUG00000007622) LRRC27 (ENSSCUG00000007618) PWWP2B (ENSSCUG00000007616) INPP5A (ENSSCUG00000007608) ENSSCUG00000007601 #22 ENSSCUG00000007590 ENSSCUG00000007588 TCTN3 (ENSSCUG00000007583) ALDH18A1 (ENSSCUG00000007529) Australian saltwater crocodile MODERN SPECIES 68 PTPRE (ENSCPRG00005009590) ENSCPRG00005009575 MGMT (ENSCPRG00005009563) EBF3 (ENSCPRG00005009556) GLRX3 (ENSCPRG00005009549) TCERG1L (ENSCPRG00005009534) PPP2R2D (ENSCPRG00005009526) BNIP3 (ENSCPRG00005009525) JAKMIP3 (ENSCPRG00005009443) DPYSL4 (ENSCPRG00005007536) STK32C (ENSCPRG00005007162) LRRC27 (ENSCPRG00005007134) PWWP2B (ENSCPRG00005007131) INPP5A (ENSCPRG00005007113) NKX6-2 (ENSCPRG00005007090) ENSCPRG00005007089 #22 ENSCPRG00005007081 Cryptodira ANCESTRAL SPECIES 6 ENSGT00850000132319.b ENSGT00940000156570.a ENSGT00390000015799 ENSGT00950000182859.A.b ENSGT00550000075030 ENSGT00940000160593 ENSGT00950000182864.a.a ENSGT00390000013415.a.a ENSGT00940000153713.E ENSGT01030000234527.A.a.b.a.b ENSGT00940000160573 ENSGT00390000007203 ENSGT00940000160735 ENSGT00390000015226.d ENSGT00940000161547 ENSGT01030000234549.a.b #22 ENSGT00570000079216 ENSGT00940000164278 #23 ENSGT00940000160175.b ##24 ENSGT00390000011408 ENSGT00940000163757 ENSGT00960000190513 ENSGT00940000165215 ENSGT00940000164759 ENSGT00940000158584 ENSGT00940000155715 ENSGT00940000162006 ENSGT00940000156981 ENSGT00940000168004 ENSGT00940000173803 ENSGT00940000157500 Testudinoidea ANCESTRAL SPECIES 2 ENSGT00850000132319.b ENSGT00940000156570.a.k ENSGT00390000015799 ENSGT00950000182859.A.b ENSGT00550000075030 ENSGT00940000160593 ENSGT00950000182864.a.a ENSGT00390000013415.a.a ENSGT00940000153713.E ENSGT01030000234527.A.a.b.a.b ENSGT00940000160573 ENSGT00390000007203 ENSGT00940000160735 ENSGT00390000015226.d ENSGT00940000161547 ENSGT01030000234549.a.b #22 ENSGT00570000079216 ENSGT00940000164278 #23 ENSGT00940000160175.b ##24 ENSGT00390000011408 ENSGT00940000163757 ENSGT00960000190513 ENSGT00940000165097.a ENSGT00940000164759 ENSGT00940000158584 ENSGT00940000155715 ENSGT00940000162006 ENSGT00940000156981 ENSGT00940000168004 ENSGT00940000173803 ENSGT00940000157500 Testudinidae ANCESTRAL SPECIES 9 ENSGT00940000156570.a.l ENSGT00940000154352.A ENSGT00390000015799 ENSGT00950000182859.A.b ENSGT00550000075030 ENSGT00940000160593 ENSGT00950000182864.a.a ENSGT00390000013415.a.a ENSGT00940000153713.E ENSGT01030000234527.A.a.b.a.b ENSGT00940000160573 ENSGT00390000007203 ENSGT00940000160735 ENSGT00390000015226.d ENSGT00940000161547 ENSGT01030000234549.a.b #22 ENSGT00570000079216 ENSGT00940000164278 #23 ENSGT00940000160175.b ##24 ENSGT00390000011408 ENSGT00940000163757 ENSGT00940000164759 ENSGT00940000158584 ENSGT00940000155715 ENSGT00940000162006 ENSGT00940000156981 ENSGT00940000156590 ENSGT00940000173803 ENSGT00940000157500 ENSGT00940000158949 ENSGT00390000009948.c Goode s thornscrub tortoise MODERN SPECIES 21 ENSGEVG00005017481 MGMT (ENSGEVG00005017500) EBF3 (ENSGEVG00005017519) ENSGEVG00005017678 GLRX3 (ENSGEVG00005017697) TCERG1L (ENSGEVG00005017717) PPP2R2D (ENSGEVG00005017762) BNIP3 (ENSGEVG00005017778) JAKMIP3 (ENSGEVG00005017824) DPYSL4 (ENSGEVG00005018161) STK32C (ENSGEVG00005018456) LRRC27 (ENSGEVG00005018494) PWWP2B (ENSGEVG00005018522) INPP5A (ENSGEVG00005018557) NKX6-2 (ENSGEVG00005018624) ENSGEVG00005018656 #22 ENSGEVG00005018702 ENSGEVG00005018774 #23 ADGRA1 (ENSGEVG00005018796) ##24 ENSGEVG00005018812 ENSGEVG00005018828 ENSGEVG00005018861 ENSGEVG00005018876 ENSGEVG00005018893 ENSGEVG00005018903 DNTT (ENSGEVG00005018928) BLNK (ENSGEVG00005019008) ZNF518A (ENSGEVG00005019060) CCNJ (ENSGEVG00005019063) ENSGEVG00005019083 ENSGEVG00005019092 Abingdon island giant tortoise MODERN SPECIES 2115 PPP2R2D (ENSCABG00000017675) BNIP3 (ENSCABG00000017627) JAKMIP3 (ENSCABG00000017570) DPYSL4 (ENSCABG00000017509) STK32C (ENSCABG00000017467) LRRC27 (ENSCABG00000017462) PWWP2B (ENSCABG00000017457) INPP5A (ENSCABG00000017443) NKX6-2 (ENSCABG00000017441) ENSCABG00000017439 #22 ENSCABG00000017434 Emydidae ANCESTRAL SPECIES 6 ENSGT00850000132319.b ENSGT00940000156570.a.k ENSGT00390000015799 ENSGT00950000182859.A.b ENSGT00550000075030 ENSGT00940000160593 ENSGT00950000182864.a.a ENSGT00390000013415.a.a ENSGT00940000153713.E ENSGT01030000234527.A.a.b.a.b ENSGT00940000160573 ENSGT00390000007203 ENSGT00940000160735 ENSGT00390000015226.d ENSGT00940000161547 ENSGT01030000234549.a.b #22 ENSGT00570000079216 ENSGT00940000164278 #23 ENSGT00940000160175.b ##24 ENSGT00390000011408 ENSGT00940000163757 ENSGT00960000190513 ENSGT00940000165097.a ENSGT00940000164759 ENSGT00940000158584 ENSGT00940000155715 ENSGT00940000162006 ENSGT00940000156981 ENSGT00940000168004 ENSGT00940000157500 ENSGT00940000158949 Three-toed box turtle MODERN SPECIES 39 ENSTMTG00000014237 ENSTMTG00000014255 MGMT (ENSTMTG00000014270) EBF3 (ENSTMTG00000014291) GLRX3 (ENSTMTG00000014369) TCERG1L (ENSTMTG00000014402) PPP2R2D (ENSTMTG00000014455) BNIP3 (ENSTMTG00000014470) JAKMIP3 (ENSTMTG00000014491) DPYSL4 (ENSTMTG00000014557) STK32C (ENSTMTG00000014863) LRRC27 (ENSTMTG00000014898) PWWP2B (ENSTMTG00000014912) INPP5A (ENSTMTG00000014936) NKX6-2 (ENSTMTG00000014987) ENSTMTG00000015005 #22 ENSTMTG00000015034 ENSTMTG00000015068 #23 ENSTMTG00000015098 ADGRA1 (ENSTMTG00000015104) ##24 ENSTMTG00000015113 ENSTMTG00000015121 ENSTMTG00000015145 DNTT (ENSTMTG00000015164) ENSTMTG00000015246 ZNF518A (ENSTMTG00000015255) CCNJ (ENSTMTG00000015257) ENSTMTG00000015270 BTAF1 (ENSTMTG00000015288) CPEB3 (ENSTMTG00000015321) MARCHF5 (ENSTMTG00000015344) painted turtle MODERN SPECIES 801 TCERG1L (ENSCPBG00000013586) PPP2R2D (ENSCPBG00000013593) BNIP3 (ENSCPBG00000013596) JAKMIP3 (ENSCPBG00000013601) DPYSL4 (ENSCPBG00000013611) STK32C (ENSCPBG00000013633) LRRC27 (ENSCPBG00000014005) PWWP2B (ENSCPBG00000014006) INPP5A (ENSCPBG00000014008) NKX6-2 (ENSCPBG00000014010) ENSCPBG00000014011 #22 ENSCPBG00000014012 ENSCPBG00000014013 ENSCPBG00000014016 ENSCPBG00000014018 #23 Chinese turtle MODERN SPECIES 2119 MGMT (ENSPSIG00000017405) EBF3 (ENSPSIG00000016691) GLRX3 (ENSPSIG00000016674) ENSPSIG00000000994 TCERG1L (ENSPSIG00000016629) PPP2R2D (ENSPSIG00000016439) BNIP3 (ENSPSIG00000016160) JAKMIP3 (ENSPSIG00000015597) DPYSL4 (ENSPSIG00000012836) STK32C (ENSPSIG00000011894) LRRC27 (ENSPSIG00000011645) PWWP2B (ENSPSIG00000000984) INPP5A (ENSPSIG00000010759) NKX6-2 (ENSPSIG00000010754) ENSPSIG00000010623 #22 ENSPSIG00000010241 ENSPSIG00000000977 CFAP46 (ENSPSIG00000008511) Lepidosauria ANCESTRAL SPECIES 8 ENSGT00940000156570.a ENSGT00940000154352.A ENSGT00390000015799 ENSGT00950000182859.A.b ENSGT00550000075030 ENSGT00940000160593 ENSGT00950000182864.a.a ENSGT00390000013415.a.a ENSGT00940000153713.E ENSGT01030000234527.A.a.b.a.b ENSGT00940000160573 ENSGT00390000007203 ENSGT00940000160735 ENSGT00390000015226.d ENSGT00940000161547 ENSGT01030000234549.a.b #22 ENSGT00570000079216 ENSGT00940000164278 #23 ENSGT00940000160175.b ##24 ENSGT00390000011408 ENSGT00940000163757 ENSGT00960000190513 ENSGT00940000164759 ENSGT00940000158584 ENSGT00940000155715 ENSGT00940000162006 ENSGT00940000156981 ENSGT00940000156590 ENSGT00940000157500 ENSGT00940000158949 ENSGT00390000009948.c Episquamata ANCESTRAL SPECIES 2 ENSGT00940000156570.a ENSGT00940000154352.A ENSGT00390000015799 ENSGT00950000182859.A.b ENSGT00550000075030 ENSGT00940000160593 ENSGT00950000182864.a.a ENSGT00390000013415.a.a ENSGT00940000153713.E ENSGT01030000234527.A.a.b.a.b ENSGT00940000160573 ENSGT00390000007203 ENSGT00940000160735 ENSGT00390000015226.d ENSGT00940000161547 ENSGT01030000234549.a.b #22 ENSGT00570000079216 ENSGT00940000164278 #23 ENSGT00940000160175.b ##24 ENSGT00390000011408 ENSGT00940000163757.b ENSGT00940000164759 ENSGT00940000158584 ENSGT00940000155715 ENSGT00940000162006 ENSGT00940000156981 ENSGT00940000156590 ENSGT00940000157500 ENSGT00940000158949 ENSGT00390000009948.c ENSGT00940000155780 Laterata ANCESTRAL SPECIES ENSGT00940000156570.a ENSGT00940000154352.A ENSGT00390000015799 ENSGT00950000182859.A.b ENSGT00550000075030 ENSGT00940000160593 ENSGT00950000182864.a.a ENSGT00390000013415.a.a ENSGT00940000153713.E ENSGT01030000234527.A.a.b.a.b ENSGT00940000160573 ENSGT00390000007203 ENSGT00940000160735 ENSGT00390000015226.d ENSGT00940000161547 ENSGT01030000234549.a.b #22 ENSGT00570000079216 ENSGT00940000164278 #23 ENSGT00940000160175.b ##24 ENSGT00390000011408 ENSGT00940000163757.b ENSGT00940000164759 ENSGT00940000158584 ENSGT00940000155715 ENSGT00940000162006 ENSGT00940000156981 ENSGT00940000156590 ENSGT00940000157500 ENSGT00940000158949 ENSGT00390000009948.c ENSGT00940000155780 Common wall lizard MODERN SPECIES 13 MGMT (ENSPMRG00000005719) EBF3 (ENSPMRG00000005686) GLRX3 (ENSPMRG00000005668) TCERG1L (ENSPMRG00000005659) PPP2R2D (ENSPMRG00000005644) BNIP3 (ENSPMRG00000005632) ENSPMRG00000005434 DPYSL4 (ENSPMRG00000005351) STK32C (ENSPMRG00000005324) LRRC27 (ENSPMRG00000005316) PWWP2B (ENSPMRG00000005312) ENSPMRG00000005307 ENSPMRG00000005301 INPP5A (ENSPMRG00000005278) NKX6-2 (ENSPMRG00000005270) ENSPMRG00000005267 #22 ENSPMRG00000005259 ENSPMRG00000005244 ENSPMRG00000005237 #23 ENSPMRG00000005211 ENSPMRG00000005205 ADGRA1 (ENSPMRG00000005187) ##24 ENSPMRG00000005175 ENSPMRG00000005167 ENSPMRG00000005164 ENSPMRG00000005163 ENSPMRG00000005156 ENSPMRG00000005154 DNTT (ENSPMRG00000005146) ENSPMRG00000005135 ZNF518A (ENSPMRG00000005130) Argentine black and white tegu MODERN SPECIES 22 TCERG1L (ENSSMRG00000014033) PPP2R2D (ENSSMRG00000014031) BNIP3 (ENSSMRG00000014029) JAKMIP3 (ENSSMRG00000013950) DPYSL4 (ENSSMRG00000013949) STK32C (ENSSMRG00000013945) LRRC27 (ENSSMRG00000013942) PWWP2B (ENSSMRG00000013940) INPP5A (ENSSMRG00000013919) NKX6-2 (ENSSMRG00000013918) ENSSMRG00000013539 #22 ENSSMRG00000013538 ENSSMRG00000013537 ENSSMRG00000013536 ENSSMRG00000013535 #23 ADGRA1 (ENSSMRG00000013533) ##24 ENSSMRG00000013531 ENSSMRG00000013530 ENSSMRG00000013527 DNTT (ENSSMRG00000013503) ENSSMRG00000013501 ZNF518A (ENSSMRG00000013500) CCNJ (ENSSMRG00000013498) CC2D2B (ENSSMRG00000013487) ENSSMRG00000013486 BTAF1 (ENSSMRG00000013484) Toxicofera ANCESTRAL SPECIES 2 ENSGT00940000156570.a ENSGT00940000154352.A ENSGT00390000015799 ENSGT00950000182859.A.b ENSGT00550000075030 ENSGT00940000160593 ENSGT00950000182864.a.a ENSGT00390000013415.a.a ENSGT00940000153713.E ENSGT01030000234527.A.a.b.a.b ENSGT00940000160573 ENSGT00390000007203 ENSGT00940000160735 ENSGT00390000015226.d ENSGT00940000161547 ENSGT01030000234549.a.b #22 ENSGT00570000079216 ENSGT00940000164278 #23 ENSGT00940000160175.b ##24 ENSGT00390000011408 ENSGT00940000163757.b ENSGT00940000164759 ENSGT00940000158584 ENSGT00940000155715 ENSGT00940000162006 ENSGT00940000156981 ENSGT00940000156590 ENSGT00940000157500 ENSGT00940000158949 ENSGT00390000009948.c ENSGT00940000155780 Elapidae ANCESTRAL SPECIES 4 ENSGT00940000156570.a ENSGT00940000154352.A ENSGT00390000015799 ENSGT00950000182859.A.b.u ENSGT00550000075030 ENSGT00940000160593 ENSGT00950000182864.a.a ENSGT00390000013415.a.a ENSGT00940000153713.E ENSGT01030000234527.A.a.b.a.b ENSGT00940000160573 ENSGT00390000007203 ENSGT00940000160735 ENSGT00390000015226.d ENSGT00940000161547 ENSGT01030000234549.a.b #22 ENSGT00570000079216 ENSGT00940000160175.b ##24 ENSGT00390000011408 ENSGT00940000163757.b ENSGT00940000164759 ENSGT00940000158584 ENSGT00940000155715 ENSGT00940000162006 ENSGT00940000156981 ENSGT00940000156590 ENSGT00940000157500 ENSGT00940000158949 ENSGT00390000009948.c ENSGT00940000155780 ENSGT00940000155921 Indian cobra MODERN SPECIES 3 ENSNNAG00000018459 ENSNNAG00000018458 MGMT (ENSNNAG00000018454) EBF3 (ENSNNAG00000018447) GLRX3 (ENSNNAG00000018441) TCERG1L (ENSNNAG00000018427) PPP2R2D (ENSNNAG00000018421) BNIP3 (ENSNNAG00000018415) JAKMIP3 (ENSNNAG00000018405) DPYSL4 (ENSNNAG00000018387) STK32C (ENSNNAG00000018377) LRRC27 (ENSNNAG00000018373) PWWP2B (ENSNNAG00000018369) INPP5A (ENSNNAG00000018361) NKX6-2 (ENSNNAG00000018356) ENSNNAG00000018284 #22 ENSNNAG00000018261 ADGRA1 (ENSNNAG00000018253) ##24 ENSNNAG00000018247 VENTX (ENSNNAG00000018245) ENSNNAG00000018241 DNTT (ENSNNAG00000018230) ENSNNAG00000018212 ZNF518A (ENSNNAG00000018205) CCNJ (ENSNNAG00000018201) CC2D2B (ENSNNAG00000018195) ENSNNAG00000018183 BTAF1 (ENSNNAG00000018161) CPEB3 (ENSNNAG00000018140) MARCHF5 (ENSNNAG00000018117) IDE (ENSNNAG00000018096) Elapidae_a ANCESTRAL SPECIES ENSGT00940000156570.a ENSGT00940000154352.A ENSGT00390000015799 ENSGT00950000182859.A.b.u ENSGT00550000075030 ENSGT00940000160593 ENSGT00950000182864.a.a ENSGT00390000013415.a.a ENSGT00940000153713.E ENSGT01030000234527.A.a.b.a.b ENSGT00940000160573 ENSGT00390000007203 ENSGT00940000160735 ENSGT00390000015226.d ENSGT00940000161547 ENSGT01030000234549.a.b #22 ENSGT00570000079216 ENSGT00940000160175.b ##24 ENSGT00390000011408 ENSGT00960000190513 ENSGT00940000164759 ENSGT00940000158584 ENSGT00940000155715 ENSGT00940000162006 ENSGT00940000156981 ENSGT00940000156590 ENSGT00940000157500 ENSGT00940000158949 ENSGT00390000009948.c ENSGT00940000155780 ENSGT00940000155921 Acanthophiinae ANCESTRAL SPECIES 1 ENSGT00940000156570.a ENSGT00390000015799 ENSGT00950000182859.A.b.u ENSGT00550000075030 ENSGT00940000160593 ENSGT00950000182864.a.a ENSGT00390000013415.a.a ENSGT00940000153713.E ENSGT01030000234527.A.a.b.a.b ENSGT00940000160573 ENSGT00390000007203 ENSGT00940000160735 ENSGT00390000013127.a.s ENSGT00390000015226.d ENSGT00940000161547 ENSGT01030000234549.a.b #22 ENSGT00570000079216 ENSGT00940000160175.b ##24 ENSGT00390000011408 ENSGT00960000190513 ENSGT00940000164759 ENSGT00940000158584 ENSGT00940000162006 ENSGT00940000156981 ENSGT00940000156590 ENSGT00940000157500 ENSGT00940000158949 ENSGT00390000009948.c ENSGT00940000155780 ENSGT00940000155921 ENSGT00940000161748 Eastern brown snake MODERN SPECIES 48 ENSPTXG00000006286 MGMT (ENSPTXG00000006288) EBF3 (ENSPTXG00000006293) GLRX3 (ENSPTXG00000006314) TCERG1L (ENSPTXG00000006317) PPP2R2D (ENSPTXG00000006320) BNIP3 (ENSPTXG00000006323) JAKMIP3 (ENSPTXG00000006332) DPYSL4 (ENSPTXG00000006426) STK32C (ENSPTXG00000006427) PWWP2B (ENSPTXG00000006597) ENSPTXG00000006598 INPP5A (ENSPTXG00000006599) NKX6-2 (ENSPTXG00000006600) ENSPTXG00000006602 #22 ENSPTXG00000006910 ADGRA1 (ENSPTXG00000006920) ##24 ENSPTXG00000006921 ENSPTXG00000006922 DNTT (ENSPTXG00000006924) ENSPTXG00000006930 ZNF518A (ENSPTXG00000006531) CCNJ (ENSPTXG00000006532) ENSPTXG00000006533 BTAF1 (ENSPTXG00000006539) CPEB3 (ENSPTXG00000008486) MARCHF5 (ENSPTXG00000008489) IDE (ENSPTXG00000008490) KIF11 (ENSPTXG00000008491) HHEX (ENSPTXG00000008558) Mainland tiger snake MODERN SPECIES 34 PTPRE (ENSNSUG00000011131) MGMT (ENSNSUG00000011250) EBF3 (ENSNSUG00000011251) GLRX3 (ENSNSUG00000011286) TCERG1L (ENSNSUG00000011287) PPP2R2D (ENSNSUG00000011293) BNIP3 (ENSNSUG00000011970) JAKMIP3 (ENSNSUG00000011971) DPYSL4 (ENSNSUG00000011972) STK32C (ENSNSUG00000011995) ENSNSUG00000011996 PWWP2B (ENSNSUG00000011998) ENSNSUG00000011999 INPP5A (ENSNSUG00000012000) NKX6-2 (ENSNSUG00000012001) ENSNSUG00000012003 #22 ENSNSUG00000012272 ADGRA1 (ENSNSUG00000012287) ##24 ENSNSUG00000012297 ENSNSUG00000012300 ENSNSUG00000012301 ENSNSUG00000012306 DNTT (ENSNSUG00000012309) ENSNSUG00000012311 ZNF518A (ENSNSUG00000012312) CCNJ (ENSNSUG00000012314) ENSNSUG00000012315 ENSNSUG00000012318 CPEB3 (ENSNSUG00000012320) MARCHF5 (ENSNSUG00000012327) IDE (ENSNSUG00000012328) Blue-lipped sea krait MODERN SPECIES 4048 ENSLLTG00000014897 #22 ENSLLTG00000014885 Lizard MODERN SPECIES 2 ENSACAG00000035655 ENSACAG00000042148 ENSACAG00000034797 TCERG1L (ENSACAG00000008136) ENSACAG00000045209 PPP2R2D (ENSACAG00000008068) BNIP3 (ENSACAG00000008046) JAKMIP3 (ENSACAG00000007932) DPYSL4 (ENSACAG00000007703) STK32C (ENSACAG00000007586) ENSACAG00000007576 PWWP2B (ENSACAG00000007567) INPP5A (ENSACAG00000005748) ENSACAG00000041088 ENSACAG00000027662 ENSACAG00000005789 #22 ENSACAG00000037493 CFAP46 (ENSACAG00000005868) ENSACAG00000021034 #23 ENSACAG00000043412 ENSACAG00000017438 C10orf88 (ENSACAG00000017448) ENSACAG00000042520 ENSACAG00000017452 PSTK (ENSACAG00000017467) IKZF5 (ENSACAG00000040076) ACADSB (ENSACAG00000017471) HMX3 (ENSACAG00000017490) HMX2 (ENSACAG00000017493) BUB3 (ENSACAG00000017494) GPR26 (ENSACAG00000017503) tuatara MODERN SPECIES 562 PPP2R2D (ENSSPUG00000006262) ENSSPUG00000006243 JAKMIP3 (ENSSPUG00000006035) DPYSL4 (ENSSPUG00000005946) ENSSPUG00000005910 STK32C (ENSSPUG00000005807) LRRC27 (ENSSPUG00000005781) PWWP2B (ENSSPUG00000005768) INPP5A (ENSSPUG00000005746) NKX6-2 (ENSSPUG00000005732) ENSSPUG00000005719 #22 Anura ANCESTRAL SPECIES 25 ENSGT00940000153342.a ENSGT00940000166377 ENSGT00390000012228 ENSGT01030000234610.b.a.a ENSGT01030000234610.b.a.b.a ENSGT01030000234610.b.a.b.b ENSGT00940000156696.B ENSGT00940000157732 ENSGT00390000000909 ENSGT00940000156184 ENSGT00940000168158 ENSGT00940000163514.C ENSGT00390000018550 ENSGT00940000155351 ENSGT00940000163896 ENSGT01030000234549.a.b #22 ENSGT00570000079216 ENSGT00940000164278 #23 ENSGT00940000160175.b ##24 ENSGT00390000011408 ENSGT00940000165097.a.a ENSGT00940000165097.b ENSGT00940000165097.a.b ENSGT00940000164759 ENSGT00940000158584 ENSGT00940000155715 ENSGT00940000162006 ENSGT00940000156981 ENSGT00940000155847 ENSGT00940000157500 ENSGT00940000158949 Frog MODERN SPECIES 7 taf5 (ENSXETG00000011394) atp5mk (ENSXETG00000034854) pdcd11 (ENSXETG00000009482) calhm2 (ENSXETG00000011395) calhm1 (ENSXETG00000031601) calhm3 (ENSXETG00000033589) neurl1 (ENSXETG00000011397) sh3pxd2a (ENSXETG00000011399) ENSXETG00000047506 stn1 (ENSXETG00000011402) slk (ENSXETG00000030054) col17a1 (ENSXETG00000033563) sfr1 (ENSXETG00000011407) gsto2 (ENSXETG00000026602) gsto1 (ENSXETG00000026601) ENSXETG00000014777 #22 ENSXETG00000042597 cfap46 (ENSXETG00000014784) XB5799637 (ENSXETG00000026599) #23 ENSXETG00000037556 ENSXETG00000046321 ENSXETG00000014782 ##24 kndc1 (ENSXETG00000008873) ventx2.1 (ENSXETG00000026798) ventx1.1 (ENSXETG00000034053) ventx2.2 (ENSXETG00000026796) ventx3.1 (ENSXETG00000032888) ventx1.2 (ENSXETG00000008879) ventx3.2 (ENSXETG00000033622) ENSXETG00000042979 XB5817455 [provisional:hs3st1] (ENSXETG00000008881) Leishan spiny toad MODERN SPECIES 9 AVPI1 (ENSLLEG00000021116) PI4K2A (ENSLLEG00000020965) MORN4 (ENSLLEG00000020877) ENSLLEG00000020855 HOGA1 (ENSLLEG00000020727) ANKRD2 (ENSLLEG00000020624) UBTD1 (ENSLLEG00000020541) ENSLLEG00000020496 MMS19 (ENSLLEG00000020197) ZDHHC16 (ENSLLEG00000020093) EXOSC1 (ENSLLEG00000020023) SFR1 (ENSLLEG00000019900) ENSLLEG00000019799 ENSLLEG00000019667 ENSLLEG00000019627 ENSLLEG00000019580 #22 CFAP46 (ENSLLEG00000016841) ENSLLEG00000016671 #23 ADGRA1 (ENSLLEG00000016103) ##24 ENSLLEG00000015945 KNDC1 (ENSLLEG00000015708) ENSLLEG00000015666 ENSLLEG00000015597 ENSLLEG00000015558 ENSLLEG00000015533 ENSLLEG00000015494 ENSLLEG00000015475 ENSLLEG00000015457 ENSLLEG00000015408 DNTT (ENSLLEG00000015306) ENSLLEG00000014433 Coelacanth MODERN SPECIES 1176 valopb (ENSLACG00000022506) #22 NKX6-2 (ENSLACG00000007212) INPP5A (ENSLACG00000007683) Elephant shark MODERN SPECIES 1488 ENSCMIG00000017396 MGMT (ENSCMIG00000017399) ebf3a (ENSCMIG00000017412) glrx3 (ENSCMIG00000017434) ENSCMIG00000017440 ppp2r2d (ENSCMIG00000017459) bnip3 (ENSCMIG00000017485) JAKMIP3 (ENSCMIG00000017490) ENSCMIG00000017508 STK32C (ENSCMIG00000017561) ENSCMIG00000017573 PWWP2B (ENSCMIG00000017576) INPP5A (ENSCMIG00000017585) nkx6.2 (ENSCMIG00000017595) ENSCMIG00000017598 valopb (ENSCMIG00000017618) #22 ENSCMIG00000017676 ENSCMIG00000017679 ENSCMIG00000017684 ENSCMIG00000017688 ENSCMIG00000017694 ENSCMIG00000017696 ENSCMIG00000017698 ENSCMIG00000017702 ENSCMIG00000017703 ADGRA1 (ENSCMIG00000017713) ##24 ENSCMIG00000017773 ENSCMIG00000017788 ENSCMIG00000017790 ENSCMIG00000017793 ENSCMIG00000017797