Euteleostomi	ANCESTRAL SPECIES	4	ENSGT00940000156570.a	ENSGT00940000154352.A	ENSGT00390000015799	ENSGT00950000182859.A.b	ENSGT00550000075030	ENSGT00940000160593	ENSGT00950000182864.a.a	ENSGT00390000013415.a.a	ENSGT00940000153713.E	ENSGT01030000234527.A.a.b.a.b	ENSGT00940000160573 #25	ENSGT00390000007203 #14	ENSGT00940000160735 #15	ENSGT00390000015226.d #16	ENSGT00940000161547 #19	ENSGT01030000234549.a.b #22	ENSGT00990000208599	ENSGT00570000079216 #24	ENSGT00940000164278 #11	ENSGT00940000160175.b #10	ENSGT00390000011408 #9	ENSGT00940000165215 #8	ENSGT00940000164759	ENSGT00940000158584	ENSGT00940000155715	ENSGT00940000162006	ENSGT00940000156981	ENSGT00940000156590	ENSGT00940000155847	ENSGT00940000157500	ENSGT00940000158949
Actinopterygii	ANCESTRAL SPECIES	7	ENSGT00940000156570.a	ENSGT00940000154352.A	ENSGT00390000015799	ENSGT00950000182859.A.b	ENSGT00550000075030	ENSGT00940000160593	ENSGT00950000182864.a.a	ENSGT00390000013415.a.a	ENSGT00940000153713.E	ENSGT01030000234527.A.a.b.a.b	ENSGT00940000160573 #25	ENSGT00390000007203 #14	ENSGT00940000160735 #15	ENSGT00390000015226.d #16	ENSGT00940000161547 #19	ENSGT01030000234549.a.b #22	ENSGT00990000208599	ENSGT00570000079216 #24	ENSGT00940000164278 #11	ENSGT00940000160175.b #10	ENSGT00390000011408 #9	ENSGT00940000165215 #8	ENSGT00940000164759	ENSGT00940000158584	ENSGT00940000155715	ENSGT00940000162006	ENSGT00940000156981	ENSGT00940000156590	ENSGT00940000157500	ENSGT00940000158949	ENSGT00390000009948.c
Neopterygii	ANCESTRAL SPECIES	10	ENSGT00940000156570.a	ENSGT00940000154352.A	ENSGT00390000015799	ENSGT00950000182859.A.b	ENSGT00550000075030	ENSGT00940000160593	ENSGT00950000182864.a.a	ENSGT00390000013415.a.a	ENSGT00940000153713.E	ENSGT01030000234527.A.a.b.a.b	ENSGT00940000160573 #25	ENSGT00390000007203 #14	ENSGT00940000160735 #15	ENSGT00390000015226.d #16	ENSGT00940000161547 #19	ENSGT01030000234549.a.b #22	ENSGT00990000208599	ENSGT00570000079216 #24	ENSGT00940000164278 #11	ENSGT00940000160175.b #10	ENSGT00390000011408 #9	ENSGT00940000165215 #8	ENSGT00940000164759	ENSGT00940000158584	ENSGT00940000155715	ENSGT00940000162006	ENSGT00940000156981	ENSGT00940000156590	ENSGT00940000157500	ENSGT00940000158949	ENSGT00390000009948.c
Osteoglossocephalai	ANCESTRAL SPECIES	65	ENSGT00940000155560.k	ENSGT00940000156754.a.b.b	ENSGT00940000159732.a	ENSGT00940000159732.b	ENSGT00940000159235	ENSGT00940000153195.B	ENSGT00940000154537.kb ##31	ENSGT00940000154537.lb #31	ENSGT00390000016042 #34	ENSGT00600000084626 #26	ENSGT00940000160573 #25	ENSGT00390000007203 #14	ENSGT00940000160735 #15	ENSGT00390000015226.d #16	ENSGT00940000161547 #19	ENSGT01030000234549.a.b #22	ENSGT00570000079216 #24	ENSGT00940000164278 #11	ENSGT00940000160175.b #10	ENSGT00390000011408 #9	ENSGT00940000165215.a #8	ENSGT00940000165215.b #7	ENSGT00940000164759	ENSGT00940000158584	ENSGT00940000155715	ENSGT00940000162006	ENSGT00940000156981	ENSGT00940000156590	ENSGT00940000157500	ENSGT00940000158949	ENSGT00390000009948.c
Clupeocephala	ANCESTRAL SPECIES	138		ENSGT00940000155560.l	ENSGT00390000005203	ENSGT00610000086460	ENSGT00940000156754.a.b.a	ENSGT00940000159732.b	ENSGT00940000159235	ENSGT00940000154537.lb #31	ENSGT00390000016042 #34	ENSGT00600000084626 #26	ENSGT00940000160573 #25	ENSGT00390000007203 #14	ENSGT00940000160735 #15	ENSGT00390000015226.d #16	ENSGT00940000161547 #19	ENSGT01030000234549.a.b #22	ENSGT00570000079216 #24	ENSGT00940000164278 #11	ENSGT00940000160175.b #10	ENSGT00390000011408 #9	ENSGT00940000165215.a #8	ENSGT00940000165215.b #7	ENSGT00940000164759	ENSGT00940000158584	ENSGT00940000177920	ENSGT00940000155715	ENSGT00940000160595.a.a	ENSGT00940000156981	ENSGT00940000156590	ENSGT00940000157500	ENSGT00940000158949
Euteleosteomorpha	ANCESTRAL SPECIES	33	ENSGT00940000167263	ENSGT00940000158638	ENSGT00940000154141.B	ENSGT00940000165391	ENSGT00940000164285.a #37	ENSGT00390000013481.c.b.b	ENSGT00940000155970 #33	ENSGT00940000154537.lb #31	ENSGT00390000016042 #34	ENSGT00600000084626 #26	ENSGT00940000160573 #25	ENSGT00390000007203 #14	ENSGT00940000160735 #15	ENSGT00390000015226.d #16	ENSGT00940000161547 #19	ENSGT01030000234549.a.b #22	ENSGT00570000079216 #24	ENSGT00940000164278 #11	ENSGT00940000160175.b #10	ENSGT00390000011408 #9	ENSGT00940000165215.a #8	ENSGT00940000165215.b #7	ENSGT00940000164759	ENSGT00940000158584	ENSGT00940000177920	ENSGT00940000155715	ENSGT00940000160595.a.a	ENSGT00940000156981	ENSGT00940000156590	ENSGT00940000157500	ENSGT00940000158949
Acanthomorphata	ANCESTRAL SPECIES	45	ENSGT00940000167263	ENSGT00940000158638	ENSGT00940000154141.B	ENSGT00940000165391	ENSGT00940000164285.a #37	ENSGT00390000013481.c.b.b	ENSGT00940000155970 #33	ENSGT00940000154537.lb #31	ENSGT00390000016042 #34	ENSGT00600000084626 #26	ENSGT00940000160573 #25	ENSGT00390000007203 #14	ENSGT00940000160735 #15	ENSGT00390000015226.d #16	ENSGT00940000161547 #19	ENSGT01030000234549.a.b #22	ENSGT00570000079216 #24	ENSGT00940000164278 #11	ENSGT00940000160175.b #10	ENSGT00390000011408 #9	ENSGT00940000165215.a #8	ENSGT00940000165215.b #7	ENSGT00940000164759	ENSGT00940000158584	ENSGT00940000177920	ENSGT00940000155715	ENSGT00940000160595.a.a	ENSGT00940000156981	ENSGT00940000157500	ENSGT00940000158949	ENSGT00390000009948.c
Euacanthomorphacea	ANCESTRAL SPECIES	32	ENSGT00940000167263	ENSGT00940000158638	ENSGT00940000154141.B	ENSGT00940000165391	ENSGT00940000164285.a #37	ENSGT00390000013481.c.b.b	ENSGT00940000155970 #33	ENSGT00940000154537.lb #31	ENSGT00390000016042 #34	ENSGT00600000084626 #26	ENSGT00940000160573 #25	ENSGT00390000007203 #14	ENSGT00940000160735 #15	ENSGT00390000015226.d #16	ENSGT00940000161547 #19	ENSGT01030000234549.a.b #22	ENSGT00570000079216 #24	ENSGT00940000164278 #11	ENSGT00940000160175.b #10	ENSGT00390000011408 #9	ENSGT00940000165215.a #8	ENSGT00940000165215.b #7	ENSGT00940000164759	ENSGT00940000158584	ENSGT00940000177920	ENSGT00940000155715	ENSGT00940000160595.a.a	ENSGT00940000156981	ENSGT00940000157500	ENSGT00940000158949	ENSGT00390000009948.c
Percomorphaceae	ANCESTRAL SPECIES	30	ENSGT00940000167263	ENSGT00940000158638	ENSGT00940000154141.B	ENSGT00940000165391	ENSGT00940000164285.a #37	ENSGT00390000013481.c.b.b	ENSGT00940000155970 #33	ENSGT00940000154537.lb #31	ENSGT00390000016042 #34	ENSGT00600000084626 #26	ENSGT00940000160573 #25	ENSGT00390000007203 #14	ENSGT00940000160735 #15	ENSGT00390000015226.d #16	ENSGT00940000161547 #19	ENSGT01030000234549.a.b #22	ENSGT00570000079216 #24	ENSGT00940000164278 #11	ENSGT00940000160175.b #10	ENSGT00390000011408 #9	ENSGT00940000165215.a #8	ENSGT00940000165215.b #7	ENSGT00940000164759	ENSGT00940000158584	ENSGT00940000177920	ENSGT00940000155715	ENSGT00940000160595.a.a	ENSGT00940000156981	ENSGT00940000157500	ENSGT00940000158949	ENSGT00390000009948.c
Percomorphaceae_B	ANCESTRAL SPECIES	24	ENSGT00940000167263	ENSGT00940000158638	ENSGT00940000154141.B	ENSGT00940000165391	ENSGT00940000164285.a #37	ENSGT00390000013481.c.b.b.d	ENSGT00940000155970 #33	ENSGT00940000154537.lb #31	ENSGT00390000016042 #34	ENSGT00600000084626 #26	ENSGT00940000160573 #25	ENSGT00390000007203 #14	ENSGT00940000160735 #15	ENSGT00390000015226.d #16	ENSGT00940000161547 #19	ENSGT01030000234549.a.b #22	ENSGT00570000079216 #24	ENSGT00940000164278 #11	ENSGT00940000160175.b #10	ENSGT00390000011408 #9	ENSGT00940000165215.a #8	ENSGT00940000165215.b #7	ENSGT00940000164759	ENSGT00940000158584	ENSGT00940000177920	ENSGT00940000155715	ENSGT00940000160595.a.a	ENSGT00940000156981	ENSGT00940000157500	ENSGT00940000158949	ENSGT00390000009948.c
Ovalentaria	ANCESTRAL SPECIES	18	ENSGT00950000182980.a.b.b.b	ENSGT00940000167263	ENSGT00940000158638	ENSGT00940000154141.B	ENSGT00940000165391	ENSGT00940000164285.a #37	ENSGT00940000155970 #33	ENSGT00940000154537.lb #31	ENSGT00390000016042 #34	ENSGT00600000084626 #26	ENSGT00940000160573 #25	ENSGT00390000007203 #14	ENSGT00940000160735 #15	ENSGT00390000015226.d #16	ENSGT00940000161547 #19	ENSGT01030000234549.a.b #22	ENSGT00570000079216 #24	ENSGT00940000164278 #11	ENSGT00940000160175.b #10	ENSGT00390000011408 #9	ENSGT00940000165215.a #8	ENSGT00940000165215.b #7	ENSGT00940000164759	ENSGT00940000158584	ENSGT00940000177920	ENSGT00940000155715	ENSGT00940000160595.a.a	ENSGT00940000156981	ENSGT00940000157500	ENSGT00940000158949	ENSGT00390000009948.c
Ovalentaria_B	ANCESTRAL SPECIES	25	ENSGT00950000182980.a.b.b.b	ENSGT00940000167263	ENSGT00940000158638	ENSGT00940000154141.B	ENSGT00940000165391	ENSGT00940000164285.a #37	ENSGT00940000155970 #33	ENSGT00940000154537.lb #31	ENSGT00390000016042 #34	ENSGT00600000084626 #26	ENSGT00940000160573 #25	ENSGT00390000007203 #14	ENSGT00940000160735 #15	ENSGT00390000015226.d #16	ENSGT00940000161547 #19	ENSGT01030000234549.a.b #22	ENSGT00570000079216 #24	ENSGT00940000164278 #11	ENSGT00940000160175.b #10	ENSGT00390000011408 #9	ENSGT00940000165215.a #8	ENSGT00940000165215.b #7	ENSGT00940000164759	ENSGT00940000158584	ENSGT00940000177920	ENSGT00940000155715	ENSGT00940000160595.a.a	ENSGT00940000156981	ENSGT00940000157500	ENSGT00940000158949	ENSGT00390000009948.c
Cichlidae	ANCESTRAL SPECIES	13	ENSGT00950000182980.a.b.b.b	ENSGT00940000167263	ENSGT00940000158638	ENSGT00940000154141.B	ENSGT00940000165391	ENSGT00940000164285.a #37	ENSGT00940000155970 #33	ENSGT00940000154537.lb #31	ENSGT00390000016042 #34	ENSGT00600000084626 #26	ENSGT00940000160573 #25	ENSGT00390000007203 #14	ENSGT00940000160735 #15	ENSGT00390000015226.d #16	ENSGT00940000161547 #19	ENSGT01030000234549.a.b #22	ENSGT00570000079216 #24	ENSGT00940000164278 #11	ENSGT00940000160175.b #10	ENSGT00390000011408 #9	ENSGT00940000165215.a #8	ENSGT00940000165215.b #7	ENSGT00940000164759	ENSGT00940000158584	ENSGT00940000155715	ENSGT00940000160595.a.a	ENSGT00940000156981	ENSGT00940000157500	ENSGT00940000158949	ENSGT00390000009948.c	ENSGT00940000155780
Pseudocrenilabrinae	ANCESTRAL SPECIES	16	ENSGT00950000182980.a.b.b.b	ENSGT00940000167263	ENSGT00940000158638	ENSGT00940000154141.B	ENSGT00940000165391	ENSGT00940000164285.a #37	ENSGT00940000155970 #33	ENSGT00940000154537.lb #31	ENSGT00390000016042 #34	ENSGT00600000084626 #26	ENSGT00940000160573 #25	ENSGT00390000007203 #14	ENSGT00940000160735 #15	ENSGT00390000015226.d #16	ENSGT00940000161547 #19	ENSGT01030000234549.a.b #22	ENSGT00570000079216 #24	ENSGT00940000164278 #11	ENSGT00940000160175.b #10	ENSGT00390000011408 #9	ENSGT00940000165215.a #8	ENSGT00940000165215.b #7	ENSGT00940000164759	ENSGT00940000158584	ENSGT00940000155715	ENSGT00940000160595.a.a	ENSGT00940000156981	ENSGT00940000157500	ENSGT00940000158949	ENSGT00390000009948.c	ENSGT00940000155780.p
Nile tilapia	MODERN SPECIES	4	ENSONIG00000036065 #7	vox (ENSONIG00000014851) #8	ENSONIG00000014855 #9	ENSONIG00000014860 #10	ENSONIG00000014863 #11	zgc:162816 (ENSONIG00000034617) #12	ENSONIG00000022337 #13	LRRC27 (ENSONIG00000030055) #14	PWWP2B (ENSONIG00000034603) #15	INPP5A (ENSONIG00000007492) #16	ENSONIG00000021280 #17	ENSONIG00000033984 #18	nkx6.2 (ENSONIG00000029020) #19	ENSONIG00000034911 #20	ENSONIG00000039179 #21	valopa (ENSONIG00000007484) #22	ENSONIG00000007480 #23	ENSONIG00000007473 #24	STK32C (ENSONIG00000007502) #25	ENSONIG00000007510 #26	ENSONIG00000042662 #27	ENSONIG00000039859 #28	ENSONIG00000036340 #29	ENSONIG00000037366 #30	ENSONIG00000032600 #31	ENSONIG00000032248 #32	rhoq (ENSONIG00000003044) #33	ENSONIG00000042326 #34	ENSONIG00000036965 #35	ENSONIG00000030620 #36	socs5b (ENSONIG00000020613) #37
Pseudocrenilabrinae_A	ANCESTRAL SPECIES	11	ENSGT00950000182980.a.b.b.b	ENSGT00940000167263	ENSGT00940000158638	ENSGT00940000154141.B	ENSGT00940000165391	ENSGT00940000164285.a #37	ENSGT00940000155970 #33	ENSGT00940000154537.lb #31	ENSGT00390000016042 #34	ENSGT00600000084626 #26	ENSGT00940000160573 #25	ENSGT00390000007203 #14	ENSGT00940000160735 #15	ENSGT00390000015226.d #16	ENSGT00940000161547 #19	ENSGT01030000234549.a.b #22	ENSGT00570000079216 #24	ENSGT00940000164278 #11	ENSGT00940000160175.b #10	ENSGT00390000011408 #9	ENSGT00940000165215.a #8	ENSGT00940000165215.b #7	ENSGT00940000164759	ENSGT00940000158584	ENSGT00940000155715	ENSGT00940000160595.a.a	ENSGT00940000156981	ENSGT00940000157500	ENSGT00940000158949	ENSGT00390000009948.c	ENSGT00940000155780.p
Haplochromini	ANCESTRAL SPECIES	10	ENSGT00950000182980.a.b.b.b	ENSGT00940000167263	ENSGT00940000158638	ENSGT00940000154141.B	ENSGT00940000165391	ENSGT00940000164285.a #37	ENSGT00940000155970 #33	ENSGT00940000154537.lb #31	ENSGT00390000016042 #34	ENSGT00600000084626 #26	ENSGT00940000160573 #25	ENSGT00390000007203 #14	ENSGT00940000160735 #15	ENSGT00390000015226.d #16	ENSGT00940000161547 #19	ENSGT01030000234549.a.b #22	ENSGT00570000079216 #24	ENSGT00940000164278 #11	ENSGT00940000160175.b #10	ENSGT00390000011408 #9	ENSGT00940000165215.a #8	ENSGT00940000165215.b #7	ENSGT00940000164759	ENSGT00940000158584	ENSGT00940000155715	ENSGT00940000160595.a.a	ENSGT00940000156981	ENSGT00940000157500	ENSGT00940000158949	ENSGT00390000009948.c	ENSGT00940000155780.p
Burton s mouthbrooder	MODERN SPECIES	481	calm2a (ENSHBUG00000008419)	si:ch211-93n23.7 (ENSHBUG00000000209)	TTC7A (ENSHBUG00000008456)	mcfd2 (ENSHBUG00000008473)	ENSHBUG00000008480	socs5b (ENSHBUG00000008489) #37	rhoq (ENSHBUG00000008514) #33	ENSHBUG00000008528 #31	ENSHBUG00000008541 #34	ENSHBUG00000008604 #26	STK32C (ENSHBUG00000008646) #25	ENSHBUG00000008653 #14	PWWP2B (ENSHBUG00000000215) #15	INPP5A (ENSHBUG00000008724) #16	nkx6.2 (ENSHBUG00000008756) #19	valopa (ENSHBUG00000008799) #22
Haplochromini_A	ANCESTRAL SPECIES	8	ENSGT00950000182980.a.b.b.b	ENSGT00940000167263	ENSGT00940000158638	ENSGT00940000154141.B	ENSGT00940000165391	ENSGT00940000164285.a #37	ENSGT00940000155970 #33	ENSGT00940000154537.lb #31	ENSGT00390000016042 #34	ENSGT00600000084626 #26	ENSGT00940000160573 #25	ENSGT00390000007203 #14	ENSGT00940000160735 #15	ENSGT00390000015226.d #16	ENSGT00940000161547 #19	ENSGT01030000234549.a.b #22	ENSGT00570000079216 #24	ENSGT00940000164278 #11	ENSGT00940000160175.b #10	ENSGT00390000011408 #9	ENSGT00940000165215.a #8	ENSGT00940000164759	ENSGT00940000158584	ENSGT00940000155715	ENSGT00940000160595.a.a	ENSGT00940000156981	ENSGT00940000157500	ENSGT00940000158949	ENSGT00390000009948.c	ENSGT00940000155780.p	ENSGT00940000155780.o
P. nyererei	MODERN SPECIES	357	ENSPNYG00000006335	ENSPNYG00000006295	calm2a (ENSPNYG00000006272)	si:ch211-93n23.7 (ENSPNYG00000006257)	TTC7A (ENSPNYG00000006096)	mcfd2 (ENSPNYG00000006022)	ENSPNYG00000006008	socs5b (ENSPNYG00000005996) #37	rhoq (ENSPNYG00000005981) #33	ENSPNYG00000005967 #31	ENSPNYG00000005941 #26	STK32C (ENSPNYG00000005894) #25	PWWP2B (ENSPNYG00000005877) #15	INPP5A (ENSPNYG00000005824) #16	nkx6.2 (ENSPNYG00000005795) #19	valopa (ENSPNYG00000005773) #22	ENSPNYG00000005725 #24	ENSPNYG00000005676 #11	ADGRA1 (ENSPNYG00000005639) #10	ENSPNYG00000005624 #9	vox (ENSPNYG00000005586) #8	ENSPNYG00000005561	dntt (ENSPNYG00000005503)	ENSPNYG00000005468	ENSPNYG00000005457	CCNJ (ENSPNYG00000005440)	BTAF1 (ENSPNYG00000005349)	cpeb3 (ENSPNYG00000005300)	marchf5 (ENSPNYG00000005261)	ide (ENSPNYG00000005074)	kmo (ENSPNYG00000005012)
Haplochromini_B	ANCESTRAL SPECIES	59	ENSGT00950000182980.a.b.b.b	ENSGT00940000167263	ENSGT00940000158638	ENSGT00940000154141.B	ENSGT00940000165391	ENSGT00940000164285.a #37	ENSGT00940000155970 #33	ENSGT00940000154537.lb #31	ENSGT00390000016042 #34	ENSGT00600000084626 #26	ENSGT00940000160573 #25	ENSGT00390000007203 #14	ENSGT00940000160735 #15	ENSGT00390000015226.d #16	ENSGT00940000161547 #19	ENSGT01030000234549.a.b #22	ENSGT00570000079216 #24	ENSGT00940000164278 #11	ENSGT00940000160175.b #10	ENSGT00390000011408 #9	ENSGT00940000165215.a #8	ENSGT00940000177959	ENSGT00940000165707	ENSGT00950000183206.a.b.a.a.b.d	ENSGT00940000159804	ENSGT01020000230360.c.b.a.b.b.d.b.b	ENSGT00940000157686	ENSGT00940000153635.A	ENSGT00940000158592	ENSGT00940000159359	ENSGT00940000156765.a.b
Eastern happy	MODERN SPECIES	4	si:ch211-93n23.7 (ENSACLG00000016569)	TTC7A (ENSACLG00000016632)	mcfd2 (ENSACLG00000016947)	ENSACLG00000016952	socs5b (ENSACLG00000016971) #37	rhoq (ENSACLG00000016986) #33	ENSACLG00000017012 #31	ENSACLG00000017026 #34	ENSACLG00000017033 #26	STK32C (ENSACLG00000017108) #25	ENSACLG00000017200	LRRC27 (ENSACLG00000017210) #14	PWWP2B (ENSACLG00000017264) #15	INPP5A (ENSACLG00000017291) #16	nkx6.2 (ENSACLG00000017440) #19	valopa (ENSACLG00000017468) #22	CFAP46 (ENSACLG00000017504) #24	ENSACLG00000017665 #11	ENSACLG00000017692	ENSACLG00000017709	ENSACLG00000017723 #10	KNDC1 (ENSACLG00000017774) #9	vox (ENSACLG00000017850) #8	vent (ENSACLG00000017858)	ENSACLG00000017879	ENSACLG00000017891	dntt (ENSACLG00000017957)	ENSACLG00000018158	ENSACLG00000018295	CCNJ (ENSACLG00000018307)	BTAF1 (ENSACLG00000018336)
Zebra mbuna	MODERN SPECIES	1095	calm2a (ENSMZEG00005018099)	si:ch211-93n23.7 (ENSMZEG00005018098)	TTC7A (ENSMZEG00005018070)	mcfd2 (ENSMZEG00005018060)	ENSMZEG00005018057	socs5b (ENSMZEG00005018055) #37	rhoq (ENSMZEG00005018052) #33	ENSMZEG00005018050 #31	ENSMZEG00005018049 #34	ENSMZEG00005018046 #26	STK32C (ENSMZEG00005018031) #25	LRRC27 (ENSMZEG00005018023) #14	PWWP2B (ENSMZEG00005018021) #15	INPP5A (ENSMZEG00005018019) #16	nkx6.2 (ENSMZEG00005018013) #19	valopa (ENSMZEG00005012467) #22	ENSMZEG00005012435 #34	ENSMZEG00005012425	ENSMZEG00005012412	ENSMZEG00005012402	ENSMZEG00005012395	ENSMZEG00005012386	ENSMZEG00005012379	ENSMZEG00005012374	ENSMZEG00005012358 #24	ENSMZEG00005012342 #11	ENSMZEG00005012324 #10	ENSMZEG00005012308 #9	ENSMZEG00005012305 #9	vox (ENSMZEG00005012301) #8	vent (ENSMZEG00005012295)
Lyretail cichlid	MODERN SPECIES	349	ENSNBRG00000019453	calm2a (ENSNBRG00000019426)	si:ch211-93n23.7 (ENSNBRG00000019404)	TTC7A (ENSNBRG00000019362)	mcfd2 (ENSNBRG00000019344)	ENSNBRG00000019331	socs5b (ENSNBRG00000019321) #37	rhoq (ENSNBRG00000019299) #33	ENSNBRG00000019284 #31	ENSNBRG00000019266 #34	ENSNBRG00000019239 #26	STK32C (ENSNBRG00000019203) #25	PWWP2B (ENSNBRG00000019188) #15	INPP5A (ENSNBRG00000019130) #16	nkx6.2 (ENSNBRG00000019104) #19	valopa (ENSNBRG00000018880) #22	ENSNBRG00000018710 #24	ENSNBRG00000018663 #11	ADGRA1 (ENSNBRG00000018642) #10	ENSNBRG00000018628 #9	ENSNBRG00000018619 #7	ENSNBRG00000018600	ENSNBRG00000018593	dntt (ENSNBRG00000018516)	ENSNBRG00000018484	ENSNBRG00000018479	CCNJ (ENSNBRG00000018463)	BTAF1 (ENSNBRG00000018377)	cpeb3 (ENSNBRG00000018343)	marchf5 (ENSNBRG00000018316)	ide (ENSNBRG00000018270)
Midas cichlid	MODERN SPECIES	989	ENSACIG00000014437	calm2a (ENSACIG00000014472)	si:ch211-93n23.7 (ENSACIG00000015301)	TTC7A (ENSACIG00000015319)	mcfd2 (ENSACIG00000015394)	ENSACIG00000015406	rhoq (ENSACIG00000015449) #33	ENSACIG00000015464 #31	tmem254 (ENSACIG00000015480) #34	ENSACIG00000015519 #26	ENSACIG00000015553	STK32C (ENSACIG00000015592) #25	PWWP2B (ENSACIG00000015619) #15	INPP5A (ENSACIG00000015636) #16	nkx6.2 (ENSACIG00000015666) #19	valopa (ENSACIG00000015704) #22	ENSACIG00000015959 #24	ENSACIG00000016011 #11
Pomacentridae	ANCESTRAL SPECIES	36	ENSGT00950000182980.a.b.b.b	ENSGT00940000167263	ENSGT00940000158638	ENSGT00940000154141.B	ENSGT00940000162292	ENSGT00940000164285.a #37	ENSGT00940000155970 #33	ENSGT00940000154537.lb #31	ENSGT00390000016042 #34	ENSGT00600000084626 #26	ENSGT00940000160573 #25	ENSGT00390000007203 #14	ENSGT00940000160735 #15	ENSGT00390000015226.d #16	ENSGT00940000161547 #19	ENSGT01030000234549.a.b #22	ENSGT00570000079216 #24	ENSGT00940000164278 #11	ENSGT00940000160175.b #10	ENSGT00390000011408 #9	ENSGT00940000165215.a #8	ENSGT00940000165215.b #7	ENSGT00940000164759	ENSGT00940000158584	ENSGT00940000177920	ENSGT00940000155715	ENSGT00940000160595.a.a	ENSGT00940000156981	ENSGT00940000157500	ENSGT00940000158949	ENSGT00390000009948.c
Pomacentridae_A	ANCESTRAL SPECIES	41	ENSGT00950000182980.a.b.b.b	ENSGT00940000167263	ENSGT00940000158638	ENSGT00940000154141.B	ENSGT00940000162292	ENSGT00940000164285.a #37	ENSGT00940000155970 #33	ENSGT00940000154537.lb #31	ENSGT00390000016042 #34	ENSGT00600000084626 #26	ENSGT00940000160573 #25	ENSGT00390000007203 #14	ENSGT00940000160735 #15	ENSGT00390000015226.d #16	ENSGT00940000161547 #19	ENSGT01030000234549.a.b #22	ENSGT00570000079216 #24	ENSGT00940000164278 #11	ENSGT00940000160175.b #10	ENSGT00390000011408 #9	ENSGT00940000165215.a #8	ENSGT00940000165215.b #7	ENSGT00940000164759	ENSGT00940000158584	ENSGT00940000177920	ENSGT00940000155715	ENSGT00940000160595.a.a	ENSGT00940000156981	ENSGT00940000157500	ENSGT00940000158949	ENSGT00390000009948.c
Spiny chromis	DUPLICATION
Spiny chromis	MODERN SPECIES	555																ENSAPOG00000020675 #22	ENSAPOG00000020645 #24	ENSAPOG00000020625 #24	ENSAPOG00000020556 #11
Spiny chromis	MODERN SPECIES	3179																valopa (ENSAPOG00000005266) #22
Amphiprion	ANCESTRAL SPECIES	47	ENSGT00950000182980.a.b.b.b	ENSGT00940000167263	ENSGT00940000158638	ENSGT00940000154141.B	ENSGT00940000162292	ENSGT00940000164285.a #37	ENSGT00940000155970 #33	ENSGT00940000154537.lb #31	ENSGT00390000016042 #34	ENSGT00600000084626 #26	ENSGT00940000160573 #25	ENSGT00390000007203 #14	ENSGT00940000160735 #15	ENSGT00390000015226.d #16	ENSGT00940000161547 #19	ENSGT01030000234549.a.b #22	ENSGT00570000079216 #24	ENSGT00940000164278 #11	ENSGT00940000160175.b #10	ENSGT00390000011408 #9	ENSGT00940000165215.a #8	ENSGT00940000165215.b #7	ENSGT00940000164759	ENSGT00940000158584	ENSGT00940000177920	ENSGT00940000155715	ENSGT00940000160595.a.a	ENSGT00940000156981	ENSGT00940000157500	ENSGT00940000158949	ENSGT00390000009948.c
Clown anemonefish	MODERN SPECIES	1703															nkx6.2 (ENSAOCG00000006772) #19	valopa (ENSAOCG00000006757) #22	ENSAOCG00000000333 #24	ENSAOCG00000006729 #24	ENSAOCG00000006691 #11	ADGRA1 (ENSAOCG00000000323) #10	ENSAOCG00000006654 #9	ENSAOCG00000006638 #9
Orange clownfish	MODERN SPECIES	12	calm2a (ENSAPEG00000006472)	si:ch211-93n23.7 (ENSAPEG00000006439)	TTC7A (ENSAPEG00000006408)	mcfd2 (ENSAPEG00000006376)	ENSAPEG00000006362	socs5b (ENSAPEG00000006338) #37	rhoq (ENSAPEG00000006311) #33	mxtx1 (ENSAPEG00000006288) #31	tmem254 (ENSAPEG00000006280) #34	ENSAPEG00000006236 #26	STK32C (ENSAPEG00000006194) #25	ENSAPEG00000006153 #14	PWWP2B (ENSAPEG00000006145) #15	INPP5A (ENSAPEG00000006102) #16	nkx6.2 (ENSAPEG00000006080) #19	valopa (ENSAPEG00000006064) #22	ENSAPEG00000006047 #24	ENSAPEG00000005996 #24	ENSAPEG00000005962 #11	ENSAPEG00000005860	ADGRA1 (ENSAPEG00000005838) #10	ENSAPEG00000005822 #9	vox (ENSAPEG00000005806) #8	ENSAPEG00000005784 #7	ENSAPEG00000005778	dntt (ENSAPEG00000005646)	blnk (ENSAPEG00000005568)	ENSAPEG00000005536	CCNJ (ENSAPEG00000005522)	BTAF1 (ENSAPEG00000005376)	cpeb3 (ENSAPEG00000005329)
Bicolor damselfish	MODERN SPECIES	1621																valopa (ENSSPAG00000015356) #22	ENSSPAG00000015322 #24
Atherinomorphae	ANCESTRAL SPECIES	16	ENSGT00730000110943.B.c	ENSGT00950000182980.a.b.b.b	ENSGT00940000158638	ENSGT00940000154141.B	ENSGT00940000165391	ENSGT00940000164285.a #37	ENSGT00940000155970 #33	ENSGT00940000154537.lb #31	ENSGT00390000016042 #34	ENSGT00600000084626 #26	ENSGT00940000160573 #25	ENSGT00390000007203 #14	ENSGT00940000160735 #15	ENSGT00390000015226.d #16	ENSGT00940000161547 #19	ENSGT01030000234549.a.b #22	ENSGT00570000079216 #24	ENSGT00940000164278 #11	ENSGT00940000160175.b #10	ENSGT00390000011408 #9	ENSGT00940000165215.a #8	ENSGT00940000164759	ENSGT00940000158584	ENSGT00940000177920	ENSGT00940000155715	ENSGT00940000160595.a.a	ENSGT00940000156981	ENSGT00940000157500	ENSGT00940000158949	ENSGT00390000009948.c	ENSGT00940000155780
Oryzias	ANCESTRAL SPECIES	6	ENSGT01030000234532.A.a.a.b.j.a	ENSGT00940000154866.B.a	ENSGT00940000154200.A.b	ENSGT00940000156083	ENSGT00940000157348	ENSGT00390000012337	ENSGT00940000153577.A	ENSGT00510000046499.f	ENSGT00940000154537.lb #31	ENSGT00390000016042 #34	ENSGT00600000084626 #26	ENSGT00940000160573 #25	ENSGT00940000160735 #15	ENSGT00390000015226.d #16	ENSGT00940000161547 #19	ENSGT01030000234549.a.b #22	ENSGT00570000079216 #24	ENSGT00940000164278 #11	ENSGT00940000160175.b #10	ENSGT00390000011408 #9	ENSGT00940000165215.a #8	ENSGT00940000164759	ENSGT00940000158584	ENSGT00940000177920	ENSGT00940000155715	ENSGT00940000160595.a.a	ENSGT00940000156981	ENSGT00940000157500	ENSGT00940000158949	ENSGT00390000009948.c	ENSGT00940000155780.k.a
Oryzias_b	ANCESTRAL SPECIES	49	ENSGT01030000234532.A.a.a.b.j.a	ENSGT00940000154866.B.a	ENSGT00940000154200.A.b	ENSGT00940000156083	ENSGT00940000157348	ENSGT00390000012337	ENSGT00940000153577.A	ENSGT00510000046499.f	ENSGT00940000154537.lb #31	ENSGT00390000016042 #34	ENSGT00600000084626 #26	ENSGT00940000160573 #25	ENSGT00940000160735 #15	ENSGT00390000015226.d #16	ENSGT00940000161547 #19	ENSGT01030000234549.a.b #22	ENSGT00570000079216 #24	ENSGT00940000164278 #11	ENSGT00940000160175.b #10	ENSGT00390000011408 #9	ENSGT00940000165215.a #8	ENSGT00940000164759	ENSGT00940000158584	ENSGT00940000155715	ENSGT00940000160595.a.a	ENSGT00940000156981	ENSGT00940000157500	ENSGT00940000158949	ENSGT00390000009948.c	ENSGT00940000155780.k.a	ENSGT00940000157736
Indian medaka	MODERN SPECIES	27	RIN2 (ENSOMEG00000001939)	ENSOMEG00000001925	pcca (ENSOMEG00000001912)	ENSOMEG00000001896	ENSOMEG00000000998	CDT1 (ENSOMEG00000001880)	ENSOMEG00000001859	cbr1 (ENSOMEG00000001847)	mxtx1 (ENSOMEG00000001842) #31	ENSOMEG00000001836 #34	ENSOMEG00000000665 #26	STK32C (ENSOMEG00000001824) #25	PWWP2B (ENSOMEG00000001817) #15	INPP5A (ENSOMEG00000001808) #16	nkx6.2 (ENSOMEG00000001792) #19	valopa (ENSOMEG00000001785) #22	ENSOMEG00000001777	ENSOMEG00000001767 #24	ENSOMEG00000001759 #11	ENSOMEG00000001748 #10	ENSOMEG00000001733 #9	vox (ENSOMEG00000001730) #8	ENSOMEG00000001729	dntt (ENSOMEG00000001723)	ENSOMEG00000001709	ENSOMEG00000001703	macroh2a2 (ENSOMEG00000001698)	GBF1 (ENSOMEG00000001687)	GBF1 (ENSOMEG00000001669)	pitx3 (ENSOMEG00000001662)	hspa12a (ENSOMEG00000001644)
Javanese ricefish	MODERN SPECIES	6	ENSOJAG00000015517	SLC24A3 (ENSOJAG00000015537)	RIN2 (ENSOJAG00000015841)	ENSOJAG00000015870	pcca (ENSOJAG00000015899)	CDT1 (ENSOJAG00000018238)	ENSOJAG00000018262	cbr1 (ENSOJAG00000018300)	mxtx1 (ENSOJAG00000018319) #31	tmem254 (ENSOJAG00000018330) #34	ENSOJAG00000018344 #26	STK32C (ENSOJAG00000018392) #25	PWWP2B (ENSOJAG00000018710) #15	INPP5A (ENSOJAG00000018734) #16	nkx6.2 (ENSOJAG00000018968) #19	valopa (ENSOJAG00000018981) #22	ENSOJAG00000019031 #24	ENSOJAG00000005117 #24	ENSOJAG00000005135 #11	ADGRA1 (ENSOJAG00000005149) #10	ENSOJAG00000005165 #9	vox (ENSOJAG00000005173) #8	ENSOJAG00000005184	dntt (ENSOJAG00000005201)	blnk (ENSOJAG00000005236)	ENSOJAG00000005271	CCNJ (ENSOJAG00000005276)	cpeb3 (ENSOJAG00000006321)	marchf5 (ENSOJAG00000006507)	ide (ENSOJAG00000006576)	cdc42ep3 (ENSOJAG00000007125)
Oryzias_a	ANCESTRAL SPECIES	4	ENSGT00390000007683	ENSGT00990000204611.d	ENSGT01030000234532.A.a.a.b.j.a	ENSGT00940000154866.B.a	ENSGT00940000154200.A.b	ENSGT00940000156083	ENSGT00940000157348	ENSGT00390000012337	ENSGT00940000153577.A	ENSGT00940000182531	ENSGT00600000084626 #26	ENSGT00940000160573 #25	ENSGT00940000160735 #15	ENSGT00390000015226.d #16	ENSGT00940000161547 #19	ENSGT01030000234549.a.b #22	ENSGT00570000079216 #24	ENSGT00940000164278 #11	ENSGT00940000160175.b #10	ENSGT00390000011408 #9	ENSGT00940000165215.a #8	ENSGT00940000164759	ENSGT00940000158584	ENSGT00940000177920	ENSGT00940000155715	ENSGT00940000160595.a.a	ENSGT00940000156981	ENSGT00940000157500	ENSGT00940000158949	ENSGT00390000009948.c	ENSGT00940000155780.k.a
Chinese medaka	MODERN SPECIES	1329	RNF166 (ENSOSIG00000009927)	cyp17a1 (ENSOSIG00000009662)	borcs7 (ENSOSIG00000009658)	ENSOSIG00000009656	ENSOSIG00000009426	RIN2 (ENSOSIG00000009424)	ENSOSIG00000009423	pcca (ENSOSIG00000009007)	PIEZO1 (ENSOSIG00000008364)	ENSOSIG00000008353	ENSOSIG00000008352 #26	STK32C (ENSOSIG00000008351) #25	PWWP2B (ENSOSIG00000008350) #15	INPP5A (ENSOSIG00000008316) #16	nkx6.2 (ENSOSIG00000008305) #19	valopa (ENSOSIG00000008303) #22	ENSOSIG00000008301	ENSOSIG00000008298 #11	ADGRA1 (ENSOSIG00000008297) #10	ENSOSIG00000008294 #9	vox (ENSOSIG00000008292) #8	ENSOSIG00000008289
Japanese Medaka HdrR	MODERN SPECIES	6	PIEZO1 (ENSORLG00000000402)	ENSORLG00000029276	CDT1 (ENSORLG00000000411)	SETD4 (ENSORLG00000000434)	ENSORLG00000029693	ENSORLG00000027490	cbr1 (ENSORLG00000000452)	mxtx1 (ENSORLG00000000457) #31	ENSORLG00000025443	ENSORLG00000000468 #26	STK32C (ENSORLG00000000480) #25	ENSORLG00000023918 ##35	PWWP2B (ENSORLG00000000489) #15	INPP5A (ENSORLG00000000540) #16	nkx6.2 (ENSORLG00000026825) #19	valopa (ENSORLG00000000556) #22	ENSORLG00000022977 #24	ENSORLG00000029700	ENSORLG00000000601 #11	ENSORLG00000030623	ADGRA1 (ENSORLG00000000620) #10	ENSORLG00000024250 #9	vox (ENSORLG00000000633) #8	ENSORLG00000024036	dntt (ENSORLG00000000644)	ENSORLG00000029694	blnk (ENSORLG00000000661)	ENSORLG00000000665	ENSORLG00000000674	BTAF1 (ENSORLG00000000700)	cpeb3 (ENSORLG00000000726)
Cyprinodontiformes	ANCESTRAL SPECIES	17	ENSGT00730000110943.B.c	ENSGT00950000182980.a.b.b.b	ENSGT00940000158638	ENSGT00940000154141.B	ENSGT00940000165391	ENSGT00940000164285.a #37	ENSGT00940000155970 #33	ENSGT00940000154537.lb #31	ENSGT00390000016042 #34	ENSGT00600000084626 #26	ENSGT00940000160573 #25	ENSGT00390000007203 #14	ENSGT00940000160735 #15	ENSGT00390000015226.d #16	ENSGT00940000161547 #19	ENSGT01030000234549.a.b #22	ENSGT00570000079216 #24	ENSGT00940000164278 #11	ENSGT00940000160175.b #10	ENSGT00390000011408 #9	ENSGT00940000165215.a #8	ENSGT00940000164759	ENSGT00940000158584	ENSGT00940000177920	ENSGT00940000155715	ENSGT00940000160595.a.a	ENSGT00940000156981	ENSGT00940000157500	ENSGT00940000158949	ENSGT00390000009948.c	ENSGT00940000155780
Cyprinodontoidei	ANCESTRAL SPECIES	14	ENSGT00730000110943.B.c	ENSGT00950000182980.a.b.b.b	ENSGT00940000158638	ENSGT00940000154141.B	ENSGT00940000165391	ENSGT00940000164285.a #37	ENSGT00940000155970 #33	ENSGT00940000154537.lb #31	ENSGT00390000016042 #34	ENSGT00600000084626 #26	ENSGT00940000160573 #25	ENSGT00390000007203 #14	ENSGT00940000160735 #15	ENSGT00390000015226.d #16	ENSGT00940000161547 #19	ENSGT01030000234549.a.b #22	ENSGT00570000079216 #24	ENSGT00940000164278 #11	ENSGT00940000160175.b #10	ENSGT00390000011408 #9	ENSGT00940000165215.a #8	ENSGT00940000164759	ENSGT00940000158584	ENSGT00940000177920	ENSGT00940000155715	ENSGT00940000160595.a.a	ENSGT00940000156981	ENSGT00940000157500	ENSGT00940000158949	ENSGT00390000009948.c	ENSGT00940000155780
NAME_4	ANCESTRAL SPECIES	58	ENSGT00730000110943.B.c	ENSGT00950000182980.a.b.b.b	ENSGT00940000158638	ENSGT00940000154141.B	ENSGT00940000165391	ENSGT00940000164285.a #37	ENSGT00940000155970 #33	ENSGT00940000154537.lb #31	ENSGT00390000016042 #34	ENSGT00600000084626 #26	ENSGT00940000160573 #25	ENSGT00390000007203 #14	ENSGT00940000160735 #15	ENSGT00390000015226.d #16	ENSGT00940000161547 #19	ENSGT01030000234549.a.b #22	ENSGT00570000079216 #24	ENSGT00940000164278 #11	ENSGT00940000160175.b #10	ENSGT00390000011408 #9	ENSGT00940000165215.a #8	ENSGT00940000164759	ENSGT00940000158584	ENSGT00940000177920	ENSGT00940000156981	ENSGT00940000157500	ENSGT00940000158949	ENSGT00390000009948.c	ENSGT00940000155780	ENSGT00390000000747	ENSGT01100000263502.A.a.b
Sheepshead minnow	MODERN SPECIES	520														INPP5A (ENSCVAG00000008169) #16	nkx6.2 (ENSCVAG00000008201) #19	valopa (ENSCVAG00000008251) #22	jag1b (ENSCVAG00000008444)	BTBD3 (ENSCVAG00000000242)	sptlc3 (ENSCVAG00000008555)	ism1 (ENSCVAG00000008572)	tasp1 (ENSCVAG00000008744)
Mummichog	MODERN SPECIES	2195	ENSFHEG00000020652	calm2a (ENSFHEG00000020657)	TTC7A (ENSFHEG00000020687)	mcfd2 (ENSFHEG00000020700)	ENSFHEG00000020714	socs5b (ENSFHEG00000020721) #37	rhoq (ENSFHEG00000020742) #33	mxtx1 (ENSFHEG00000020765) #31	ENSFHEG00000020772 #34	ENSFHEG00000020811 #26	STK32C (ENSFHEG00000020845) #25	ENSFHEG00000020866 #14	PWWP2B (ENSFHEG00000020873) #15	INPP5A (ENSFHEG00000000519) #16	nkx6.2 (ENSFHEG00000020909) #19	valopa (ENSFHEG00000020929) #22	ENSFHEG00000020944 #24	ENSFHEG00000020954 #24	ENSFHEG00000020960 #11	ADGRA1 (ENSFHEG00000021011) #10	ENSFHEG00000021021 #9	vox (ENSFHEG00000021027) #8	ENSFHEG00000021033	dntt (ENSFHEG00000021138)	blnk (ENSFHEG00000021156)	ENSFHEG00000021174	BTAF1 (ENSFHEG00000021288)	cpeb3 (ENSFHEG00000021371)	marchf5 (ENSFHEG00000021388)	ide (ENSFHEG00000021532)	kmo (ENSFHEG00000021606)
Poeciliinae	ANCESTRAL SPECIES	16	ENSGT00730000110943.B.c	ENSGT00950000182980.a.b.b.b	ENSGT00940000158638	ENSGT00940000154141.B	ENSGT00940000165391	ENSGT00940000164285.a #37	ENSGT00940000155970 #33	ENSGT00940000154537.lb #31	ENSGT00390000016042 #34	ENSGT00600000084626 #26	ENSGT00940000160573 #25	ENSGT00390000007203 #14	ENSGT00940000160735 #15	ENSGT00390000015226.d #16	ENSGT00940000161547 #19	ENSGT01030000234549.a.b #22	ENSGT00570000079216 #24	ENSGT00940000164278 #11	ENSGT00940000160175.b #10	ENSGT00390000011408 #9	ENSGT00940000165215.a #8	ENSGT00940000164759	ENSGT00940000158584	ENSGT00940000177920	ENSGT00940000155715	ENSGT00940000160595.a.a	ENSGT00940000156981	ENSGT00940000157500	ENSGT00940000158949	ENSGT00390000009948.c	ENSGT00940000155780
Poecilia	ANCESTRAL SPECIES	11	ENSGT00730000110943.B.c	ENSGT00950000182980.a.b.b.b	ENSGT00940000158638	ENSGT00940000154141.B	ENSGT00940000165391	ENSGT00940000164285.a #37	ENSGT00940000155970 #33	ENSGT00940000154537.lb #31	ENSGT00390000016042 #34	ENSGT00600000084626 #26	ENSGT00940000160573 #25	ENSGT00390000007203 #14	ENSGT00940000160735 #15	ENSGT00390000015226.d #16	ENSGT00940000161547 #19	ENSGT01030000234549.a.b #22	ENSGT00570000079216 #24	ENSGT00940000164278 #11	ENSGT00940000160175.b #10	ENSGT00390000011408 #9	ENSGT00940000165215.a #8	ENSGT00940000164759	ENSGT00940000158584	ENSGT00940000177920	ENSGT00940000155715	ENSGT00940000160595.a.a	ENSGT00940000156981	ENSGT00940000157500	ENSGT00940000158949	ENSGT00390000009948.c	ENSGT00940000155780
NAME_6	ANCESTRAL SPECIES	203	ENSGT00730000110943.B.c	ENSGT00950000182980.a.b.b.b	ENSGT00940000158638	ENSGT00940000154141.B	ENSGT00940000165391	ENSGT00940000164285.a #37	ENSGT00940000155970 #33	ENSGT00940000154537.lb #31	ENSGT00390000016042 #34	ENSGT00600000084626 #26	ENSGT00940000160573 #25	ENSGT00390000007203 #14	ENSGT00940000160735 #15	ENSGT00390000015226.d #16	ENSGT00940000161547 #19	ENSGT01030000234549.a.b #22	ENSGT00570000079216 #24	ENSGT00940000164278 #11	ENSGT00940000160175.b #10	ENSGT00390000011408 #9	ENSGT00940000165215.a #8	ENSGT00940000164759
Amazon molly	MODERN SPECIES	449				rhoq (ENSPFOG00000004834) #33	ENSPFOG00000004918 #31	tmem254 (ENSPFOG00000004937) #34	ENSPFOG00000005014 #26	ENSPFOG00000005146	STK32C (ENSPFOG00000005239) #25	ENSPFOG00000024408 #14	PWWP2B (ENSPFOG00000005628) #15	INPP5A (ENSPFOG00000005662) #16	nkx6.2 (ENSPFOG00000005993) #19	INPP5A (ENSPFOG00000006039) #16	nkx6.2 (ENSPFOG00000006051) #19	valopa (ENSPFOG00000006068) #22	ENSPFOG00000022798 #24	ENSPFOG00000006137 #24	ENSPFOG00000006396 #11	ENSPFOG00000006646 #10	KNDC1 (ENSPFOG00000007111) #9	vox (ENSPFOG00000007396) #8	ENSPFOG00000020031
Sailfin molly	MODERN SPECIES	2785																valopa (ENSPLAG00000007621) #22
Guppy	MODERN SPECIES	445	ENSPREG00000010681	calm2a (ENSPREG00000010724)	TTC7A (ENSPREG00000010741)	ENSPREG00000010761	mcfd2 (ENSPREG00000010773)	ENSPREG00000010783	socs5b (ENSPREG00000010792) #37	rhoq (ENSPREG00000010809) #33	ENSPREG00000010831 #31	tmem254 (ENSPREG00000010846) #34	ENSPREG00000010867 #26	STK32C (ENSPREG00000010915) #25	ENSPREG00000010951 #14	PWWP2B (ENSPREG00000010970) #15	nkx6.2 (ENSPREG00000010999) #19	valopa (ENSPREG00000011010) #22	ENSPREG00000011030 #24	ENSPREG00000011069	ENSPREG00000011098	ENSPREG00000011122	slc22a15 (ENSPREG00000011151)	ENSPREG00000011177	kif11 (ENSPREG00000011297)	EGR2 (ENSPREG00000011993)	adob (ENSPREG00000012002)	foxg1d (ENSPREG00000012020)	slc30a6 (ENSPREG00000012044)	sult6b1 (ENSPREG00000012075)	ENSPREG00000012118	EML6 (ENSPREG00000012147)	ENSPREG00000012218
Platyfish	MODERN SPECIES	14	ENSXMAG00000007473	calm2a (ENSXMAG00000007477)	TTC7A (ENSXMAG00000007479)	mcfd2 (ENSXMAG00000007510)	ENSXMAG00000007514	socs5b (ENSXMAG00000019827) #37	rhoq (ENSXMAG00000007515) #33	mxtx1 (ENSXMAG00000007518) #31	ENSXMAG00000007521 #34	ENSXMAG00000007525 #26	STK32C (ENSXMAG00000007528) #25	ENSXMAG00000028891 #14	PWWP2B (ENSXMAG00000007540) #15	INPP5A (ENSXMAG00000007542) #16	nkx6.2 (ENSXMAG00000007554) #19	valopa (ENSXMAG00000029737) #22	ENSXMAG00000007566 #24	ENSXMAG00000017068 #11	ADGRA1 (ENSXMAG00000007574) #10	KNDC1 (ENSXMAG00000007589) #9	vox (ENSXMAG00000007597) #8	ENSXMAG00000019828	dntt (ENSXMAG00000007601)	blnk (ENSXMAG00000025725)	CCNJ (ENSXMAG00000007625)	ENSXMAG00000025492	cpeb3 (ENSXMAG00000007652)	marchf5 (ENSXMAG00000007675)	ENSXMAG00000009019	ENSXMAG00000009048	EML4 (ENSXMAG00000009050)
Aplocheiloidei	ANCESTRAL SPECIES	230														ENSGT00390000015226.d #16	ENSGT00940000161547 #19	ENSGT01030000234549.a.b #22	ENSGT00570000079216 #24	ENSGT00940000164278 #11	ENSGT00940000160175.b #10	ENSGT00390000011408 #9	ENSGT00940000165215.a #8	ENSGT00940000164759	ENSGT00940000158584
Mangrove rivulus	MODERN SPECIES	222														INPP5A (ENSKMAG00000015822) #16	nkx6.2 (ENSKMAG00000015807) #19	valopa (ENSKMAG00000015793) #22	ENSKMAG00000015766 #24	ENSKMAG00000015745 #11	ADGRA1 (ENSKMAG00000015735) #10	KNDC1 (ENSKMAG00000015708) #9	vox (ENSKMAG00000015693) #8	ENSKMAG00000015689	dntt (ENSKMAG00000015664)
Turquoise killifish	MODERN SPECIES	1012																valopa (ENSNFUG00015011975) #22
Percomorphaceae_C	ANCESTRAL SPECIES	18	ENSGT00940000167263	ENSGT00940000158638	ENSGT00940000154141.B	ENSGT00940000165391	ENSGT00940000164285.a #37	ENSGT00390000013481.c.b.b.d	ENSGT00940000155970 #33	ENSGT00940000154537.lb #31	ENSGT00390000016042 #34	ENSGT00600000084626 #26	ENSGT00940000160573 #25	ENSGT00390000007203 #14	ENSGT00940000160735 #15	ENSGT00390000015226.d #16	ENSGT00940000161547 #19	ENSGT01030000234549.a.b #22	ENSGT00570000079216 #24	ENSGT00940000164278 #11	ENSGT00940000160175.b #10	ENSGT00390000011408 #9	ENSGT00940000165215.a #8	ENSGT00940000165215.b #7	ENSGT00940000164759	ENSGT00940000158584	ENSGT00940000177920	ENSGT00940000155715	ENSGT00940000160595.a.a	ENSGT00940000156981	ENSGT00940000157500	ENSGT00940000158949	ENSGT00390000009948.c
Eupercaria	ANCESTRAL SPECIES	15	ENSGT00940000167263	ENSGT00940000158638	ENSGT00940000154141.B	ENSGT00940000165391	ENSGT00940000164285.a #37	ENSGT00390000013481.c.b.b.d	ENSGT00940000155970 #33	ENSGT00940000154537.lb #31	ENSGT00390000016042 #34	ENSGT00600000084626 #26	ENSGT00940000160573 #25	ENSGT00390000007203 #14	ENSGT00940000160735 #15	ENSGT00390000015226.d #16	ENSGT00940000161547 #19	ENSGT01030000234549.a.b #22	ENSGT00570000079216 #24	ENSGT00940000164278 #11	ENSGT00940000160175.b #10	ENSGT00390000011408 #9	ENSGT00940000165215.a #8	ENSGT00940000165215.b #7	ENSGT00940000164759	ENSGT00940000158584	ENSGT00940000155715	ENSGT00940000160595.a.a	ENSGT00940000156981	ENSGT00940000157500	ENSGT00940000158949	ENSGT00390000009948.c	ENSGT00940000155780
Tetraodontidae	ANCESTRAL SPECIES	48	ENSGT00950000182980.a.b.b.b	ENSGT00990000206002	ENSGT00940000158638	ENSGT00940000154141.B	ENSGT00940000165391	ENSGT00940000164285.a #37	ENSGT00940000155970 #33	ENSGT00940000154537.lb #31	ENSGT00390000016042 #34	ENSGT00600000084626 #26	ENSGT00940000160573 #25	ENSGT00390000007203 #14	ENSGT00940000160735 #15	ENSGT00390000015226.d #16	ENSGT00940000161547 #19	ENSGT01030000234549.a.b #22	ENSGT00570000079216 #24	ENSGT00940000164278 #11	ENSGT00940000160175.b #10	ENSGT00390000011408 #9	ENSGT00940000165215.a #8	ENSGT00940000164759	ENSGT00940000158584	ENSGT00940000155715	ENSGT00940000160595.a.a	ENSGT00940000156981	ENSGT00940000157500	ENSGT00940000158949	ENSGT00390000009948.c	ENSGT00940000155780	ENSGT00390000000747
Fugu	MODERN SPECIES	16	ENSTRUG00000024614	ENSTRUG00000023610	TTC7A (ENSTRUG00000008737)	mcfd2 (ENSTRUG00000009161)	ENSTRUG00000009191	socs5b (ENSTRUG00000022095) #37	rhoq (ENSTRUG00000024700) #33	mxtx1 (ENSTRUG00000009443) #31	ENSTRUG00000029306 #34	ENSTRUG00000009534 #26	STK32C (ENSTRUG00000033196) #25	ENSTRUG00000032270 #14	PWWP2B (ENSTRUG00000009585) #15	INPP5A (ENSTRUG00000009619) #16	nkx6.2 (ENSTRUG00000010013) #19	valopa (ENSTRUG00000010077) #22	ENSTRUG00000030286 #24	ENSTRUG00000031713 #11	ADGRA1 (ENSTRUG00000010484) #10	ENSTRUG00000031127 #9	vox (ENSTRUG00000010857) #8	ENSTRUG00000010892	ENSTRUG00000031503	ENSTRUG00000028209	dntt (ENSTRUG00000010905)	ENSTRUG00000028294	ENSTRUG00000021277	CCNJ (ENSTRUG00000011249)	BTAF1 (ENSTRUG00000005368)	cpeb3 (ENSTRUG00000011309)	marchf5 (ENSTRUG00000027284)
Tetraodon	MODERN SPECIES	26	calm2a (ENSTNIG00000017098)	ENSTNIG00000000458	ENSTNIG00000017097	mcfd2 (ENSTNIG00000017096)	ENSTNIG00000017095	socs5b (ENSTNIG00000017094) #37	rhoq (ENSTNIG00000017093) #33	mxtx1 (ENSTNIG00000017092) #31	tmem254 (ENSTNIG00000017091) #34	ENSTNIG00000017090 #26	STK32C (ENSTNIG00000017089) #25	ENSTNIG00000000261 #14	PWWP2B (ENSTNIG00000017088) #15	INPP5A (ENSTNIG00000017087) #16	nkx6.2 (ENSTNIG00000017086) #19	valopa (ENSTNIG00000017085) #22	ENSTNIG00000000187 #24	ENSTNIG00000017084 #11	ENSTNIG00000017083	ADGRA1 (ENSTNIG00000017082) #10	KNDC1 (ENSTNIG00000017081) #9	vox (ENSTNIG00000001621) #8	ENSTNIG00000017080	ENSTNIG00000017079	dntt (ENSTNIG00000017078)	blnk (ENSTNIG00000001501)	tiprl (ENSTNIG00000014243)	PPP1R14A (ENSTNIG00000014242)	ENSTNIG00000014241	tfap2b (ENSTNIG00000014240)	tfap2b (ENSTNIG00000014239)
Eupecaria_A	ANCESTRAL SPECIES	26	ENSGT00940000167263	ENSGT00940000158638	ENSGT00940000154141.B	ENSGT00940000165391	ENSGT00940000164285.a #37	ENSGT00390000013481.c.b.b.d	ENSGT00940000155970 #33	ENSGT00940000154537.lb #31	ENSGT00390000016042 #34	ENSGT00600000084626 #26	ENSGT00940000160573 #25	ENSGT00390000007203 #14	ENSGT00940000160735 #15	ENSGT00390000015226.d #16	ENSGT00940000161547 #19	ENSGT01030000234549.a.b #22	ENSGT00570000079216 #24	ENSGT00940000164278 #11	ENSGT00940000160175.b #10	ENSGT00390000011408 #9	ENSGT00940000165215.a #8	ENSGT00940000165215.b #7	ENSGT00940000164759	ENSGT00940000158584	ENSGT00940000155715	ENSGT00940000160595.a.a	ENSGT00940000156981	ENSGT00940000157500	ENSGT00940000158949	ENSGT00390000009948.c	ENSGT00940000155780
Ballan wrasse	MODERN SPECIES	161	si:ch211-93n23.7 (ENSLBEG00000010293)	TTC7A (ENSLBEG00000009868)	mcfd2 (ENSLBEG00000009660)	PROP1 (ENSLBEG00000009650)	socs5b (ENSLBEG00000009632) #37	rhoq (ENSLBEG00000009597) #33	mxtx1 (ENSLBEG00000009575) #31	tmem254 (ENSLBEG00000009547) #34	ENSLBEG00000009458 #26	STK32C (ENSLBEG00000009387) #25	ENSLBEG00000009354	ENSLBEG00000009335	PWWP2B (ENSLBEG00000009309) #15	INPP5A (ENSLBEG00000009250) #16	nkx6.2 (ENSLBEG00000009205) #19	valopa (ENSLBEG00000009165) #22	ENSLBEG00000009108 #24	ENSLBEG00000009064 #11
Eupecaria_B	ANCESTRAL SPECIES	26	ENSGT00940000167263	ENSGT00940000158638	ENSGT00940000154141.B	ENSGT00940000165391	ENSGT00940000164285.a #37	ENSGT00390000013481.c.b.b.d	ENSGT00940000155970 #33	ENSGT00940000154537.lb #31	ENSGT00390000016042 #34	ENSGT00600000084626 #26	ENSGT00940000160573 #25	ENSGT00390000007203 #14	ENSGT00940000160735 #15	ENSGT00390000015226.d #16	ENSGT00940000161547 #19	ENSGT01030000234549.a.b #22	ENSGT00570000079216 #24	ENSGT00940000164278 #11	ENSGT00940000160175.b #10	ENSGT00390000011408 #9	ENSGT00940000165215.a #8	ENSGT00940000165215.b #7	ENSGT00940000164759	ENSGT00940000158584	ENSGT00940000155715	ENSGT00940000160595.a.a	ENSGT00940000156981	ENSGT00940000157500	ENSGT00940000158949	ENSGT00390000009948.c	ENSGT00940000155780
Eupecaria_C	ANCESTRAL SPECIES	28	ENSGT00940000167263	ENSGT00940000158638	ENSGT00940000154141.B	ENSGT00940000162292	ENSGT00940000164285.a #37	ENSGT00390000013481.c.b.b.d	ENSGT00940000155970 #33	ENSGT00940000154537.lb #31	ENSGT00390000016042 #34	ENSGT00600000084626 #26	ENSGT00940000160573 #25	ENSGT00390000007203 #14	ENSGT00940000160735 #15	ENSGT00390000015226.d #16	ENSGT00940000161547 #19	ENSGT01030000234549.a.b #22	ENSGT00570000079216 #24	ENSGT00940000164278 #11	ENSGT00940000160175.b #10	ENSGT00390000011408 #9	ENSGT00940000165215.a #8	ENSGT00940000165215.b #7	ENSGT00940000164759	ENSGT00940000158584	ENSGT00940000155715	ENSGT00940000160595.a.a	ENSGT00940000156981	ENSGT00940000157500	ENSGT00940000158949	ENSGT00390000009948.c	ENSGT00940000155780
Gilthead seabream	MODERN SPECIES	6	TTC7A (ENSSAUG00010009599)	mcfd2 (ENSSAUG00010009594)	ENSSAUG00010009593	socs5b (ENSSAUG00010009591) #37	ENSSAUG00010009589	rhoq (ENSSAUG00010009587) #33	mxtx1 (ENSSAUG00010009584) #31	ENSSAUG00010009582 #34	ENSSAUG00010009574 #26	STK32C (ENSSAUG00010008986) #25	LRRC27 (ENSSAUG00010008974) #14	PWWP2B (ENSSAUG00010008973) #15	INPP5A (ENSSAUG00010008928) #16	nkx6.2 (ENSSAUG00010008921) #19	ENSSAUG00010008918	valopa (ENSSAUG00010008916) #22	ENSSAUG00010008913 #24	ENSSAUG00010008909 #24	ENSSAUG00010008899 #11	ADGRA1 (ENSSAUG00010008894) #10	KNDC1 (ENSSAUG00010008882) #9	vox (ENSSAUG00010008879) #8	ENSSAUG00010008878 #7	ENSSAUG00010008875	dntt (ENSSAUG00010008857)	blnk (ENSSAUG00010008848)	ENSSAUG00010008845	CCNJ (ENSSAUG00010008843)	BTAF1 (ENSSAUG00010004978)	cpeb3 (ENSSAUG00010004913)	marchf5 (ENSSAUG00010004891)
Eupercaria_incertae_sedis	ANCESTRAL SPECIES	32	ENSGT00940000167263	ENSGT00940000158638	ENSGT00940000154141.B	ENSGT00940000162292	ENSGT00940000164285.a #37	ENSGT00390000013481.c.b.b.d	ENSGT00940000155970 #33	ENSGT00940000154537.lb #31	ENSGT00390000016042 #34	ENSGT00600000084626 #26	ENSGT00940000160573 #25	ENSGT00940000170679	ENSGT00940000160735 #15	ENSGT00390000015226.d #16	ENSGT00940000161547 #19	ENSGT01030000234549.a.b #22	ENSGT00570000079216 #24	ENSGT00940000164278 #11	ENSGT00940000160175.b #10	ENSGT00390000011408 #9	ENSGT00940000165215.a #8	ENSGT00940000165215.b #7	ENSGT00940000164759	ENSGT00940000158584	ENSGT00940000155715	ENSGT00940000160595.a.a	ENSGT00940000156981	ENSGT00940000157500	ENSGT00940000158949	ENSGT00390000009948.c	ENSGT00940000155780
European seabass	MODERN SPECIES	1	si:ch211-93n23.7 (ENSDLAG00005029780)	TTC7A (ENSDLAG00005009409)	mcfd2 (ENSDLAG00005026903)	ENSDLAG00005009428	socs5b (ENSDLAG00005032498) #37	ENSDLAG00005009438	ENSDLAG00005009441 #33	ENSDLAG00005009445 #31	ENSDLAG00005009450 #34	ENSDLAG00005009455 #26	STK32C (ENSDLAG00005009501) #25	ENSDLAG00005010271	PWWP2B (ENSDLAG00005010295) #15	INPP5A (ENSDLAG00005029925) #16	nkx6.2 (ENSDLAG00005010508) #19	valopa (ENSDLAG00005010514) #22	CFAP46 (ENSDLAG00005010550) #24	ENSDLAG00005030523 #11	ADGRA1 (ENSDLAG00005010601) #10	KNDC1 (ENSDLAG00005010811) #9	vox (ENSDLAG00005010862) #8	ENSDLAG00005032121 #7	ENSDLAG00005033621	dntt (ENSDLAG00005010884)	blnk (ENSDLAG00005011223)	ENSDLAG00005011261	ENSDLAG00005011266	BTAF1 (ENSDLAG00005011308)	cpeb3 (ENSDLAG00005031540)	IDE (ENSDLAG00005012101)	marchf5 (ENSDLAG00005012046)
Large yellow croaker	MODERN SPECIES	2	TTC7A (ENSLCRG00005008446)	ENSLCRG00005008452 #21	mcfd2 (ENSLCRG00005008454)	ENSLCRG00005008455	socs5b (ENSLCRG00005008456) #37	ENSLCRG00005008457	rhoq (ENSLCRG00005008460) #33	mxtx1 (ENSLCRG00005008465) #31	tmem254 (ENSLCRG00005008467) #34	ENSLCRG00005008469 #26	STK32C (ENSLCRG00005008477) #25	ENSLCRG00005008493	PWWP2B (ENSLCRG00005008494) #15	INPP5A (ENSLCRG00005008504) #16	nkx6.2 (ENSLCRG00005008864) #19	valopa (ENSLCRG00005008865) #22	ENSLCRG00005008866 #24	ENSLCRG00005008867 #24	ENSLCRG00005008868 #11	ADGRA1 (ENSLCRG00005008872) #10	KNDC1 (ENSLCRG00005009137) #9	vox (ENSLCRG00005009145) #8	ENSLCRG00005009147 #7	ENSLCRG00005009148	dntt (ENSLCRG00005009153)	blnk (ENSLCRG00005009158)	ENSLCRG00005009170	CCNJ (ENSLCRG00005000078)	BTAF1 (ENSLCRG00005000304)	cpeb3 (ENSLCRG00005003544)	marchf5 (ENSLCRG00005003726)
Perciformes	ANCESTRAL SPECIES	17	ENSGT00950000182980.a.b.b.b	ENSGT00990000206002	ENSGT00940000158638	ENSGT00940000154141.B	ENSGT00940000165391	ENSGT00940000164285.a #37	ENSGT00940000155970 #33	ENSGT00940000154537.lb #31	ENSGT00390000016042 #34	ENSGT00600000084626 #26	ENSGT00940000160573 #25	ENSGT00390000007203 #14	ENSGT00940000160735 #15	ENSGT00390000015226.d #16	ENSGT00940000161547 #19	ENSGT01030000234549.a.b #22	ENSGT00570000079216 #24	ENSGT00940000164278 #11	ENSGT00940000160175.b #10	ENSGT00390000011408 #9	ENSGT00940000165215.a #8	ENSGT00940000165215.b #7	ENSGT00940000164759	ENSGT00940000158584	ENSGT00940000155715	ENSGT00940000160595.a.a	ENSGT00940000156981	ENSGT00940000157500	ENSGT00940000158949	ENSGT00390000009948.c	ENSGT00940000155780
Cottioidei	ANCESTRAL SPECIES	36										ENSGT00600000084626 #26	ENSGT00940000160573 #25	ENSGT00390000007203 #14	ENSGT00940000160735 #15	ENSGT00390000015226.d #16	ENSGT00940000161547 #19	ENSGT01030000234549.a.b #22	ENSGT00570000079216 #24	ENSGT00940000164278 #11	ENSGT00940000160175.b #10	ENSGT00390000011408 #9	ENSGT00940000165215.a #8	ENSGT00940000165215.b #7	ENSGT00940000164759	ENSGT00940000158584	ENSGT00940000155715	ENSGT00940000156981	ENSGT00940000157500	ENSGT00940000158949	ENSGT00390000009948.c	ENSGT00940000155780	ENSGT00390000000747
Lumpfish	MODERN SPECIES	6	eif3s6ip (ENSCLMG00005021658)	SMOC2 (ENSCLMG00005021800)	dact2 (ENSCLMG00005021801)	lrrfip2 (ENSCLMG00005021816)	mlh1 (ENSCLMG00005021832)	ENSCLMG00005021838	ENSCLMG00005021841	HERC4 (ENSCLMG00005021848)	cox5b2 (ENSCLMG00005021881)	ENSCLMG00005021882 #26	STK32C (ENSCLMG00005021884) #25	LRRC27 (ENSCLMG00005021945) #14	PWWP2B (ENSCLMG00005021947) #15	INPP5A (ENSCLMG00005021958) #16	nkx6.2 (ENSCLMG00005021971) #19	valopa (ENSCLMG00005021972) #22	ENSCLMG00005021973 #24	ENSCLMG00005021974 #24	ENSCLMG00005021975 #11	ADGRA1 (ENSCLMG00005021978) #10	ENSCLMG00005022000 #9	ENSCLMG00005022004 #9	vox (ENSCLMG00005022005) #8	ENSCLMG00005022007	dntt (ENSCLMG00005022012)	ENSCLMG00005022078	CCNJ (ENSCLMG00005022079)	BTAF1 (ENSCLMG00005022092)	cpeb3 (ENSCLMG00005022098)	marchf5 (ENSCLMG00005022111)	ide (ENSCLMG00005022120)
Stickleback	MODERN SPECIES	6	haao (ENSGACG00000002666)	papolg (ENSGACG00000002718)	ENSGACG00000002730	pex13 (ENSGACG00000002732)	SANBR (ENSGACG00000002736)	XPO1 (ENSGACG00000002743)	pcgf6 (ENSGACG00000002779)	inaa (ENSGACG00000002787)	ENSGACG00000002791 #26	STK32C (ENSGACG00000002804) #25	ENSGACG00000002807	ENSGACG00000002810	PWWP2B (ENSGACG00000002816) #15	INPP5A (ENSGACG00000002820) #16	nkx6.2 (ENSGACG00000002824) #19	valopa (ENSGACG00000002828) #22	ENSGACG00000002833 #24	ENSGACG00000002838 #24	ENSGACG00000002843 #11	ADGRA1 (ENSGACG00000002848) #10	ENSGACG00000002851	ENSGACG00000002854 #9	vox (ENSGACG00000002870) #8	ENSGACG00000002875 #7	ENSGACG00000002877	dntt (ENSGACG00000002880)	blnk (ENSGACG00000002905)	CCNJ (ENSGACG00000002931)	BTAF1 (ENSGACG00000002936)	cpeb3 (ENSGACG00000002944)	marchf5 (ENSGACG00000002949)
Perciformes_a	ANCESTRAL SPECIES	40	ENSGT00950000182980.a.b.b.b	ENSGT00990000206002	ENSGT00940000158638	ENSGT00940000154141.B	ENSGT00940000165391	ENSGT00940000164285.a #37	ENSGT00940000155970 #33	ENSGT00940000154537.lb #31	ENSGT00390000016042 #34	ENSGT00600000084626 #26	ENSGT00940000160573 #25	ENSGT00390000007203 #14	ENSGT00940000160735 #15	ENSGT00390000015226.d #16	ENSGT00940000161547 #19	ENSGT01030000234549.a.b #22	ENSGT00570000079216 #24	ENSGT00940000164278 #11	ENSGT00940000160175.b #10	ENSGT00390000011408 #9	ENSGT00940000165215.a #8	ENSGT00940000165215.b #7	ENSGT00940000164759	ENSGT00940000158584	ENSGT00940000155715	ENSGT00940000160595.a.a	ENSGT00940000156981	ENSGT00940000157500	ENSGT00940000158949	ENSGT00390000009948.c	ENSGT00940000155780
Pike perch	MODERN SPECIES	62	calm2a (ENSSLUG00000006958)	ENSSLUG00000006966	TTC7A (ENSSLUG00000006976)	mcfd2 (ENSSLUG00000007002)	ENSSLUG00000007008	socs5b (ENSSLUG00000007028) #37	rhoq (ENSSLUG00000007036) #33	mxtx1 (ENSSLUG00000007046) #31	ENSSLUG00000007058 #34	ENSSLUG00000007070 #26	STK32C (ENSSLUG00000007119) #25	ENSSLUG00000007193	PWWP2B (ENSSLUG00000007199) #15	INPP5A (ENSSLUG00000007233) #16	nkx6.2 (ENSSLUG00000007911) #19	valopa (ENSSLUG00000007918) #22	ENSSLUG00000007934 #24	ENSSLUG00000007938 #24	ENSSLUG00000007942 #24	ENSSLUG00000007949 #11	ADGRA1 (ENSSLUG00000007973) #10
Channel bull blenny	MODERN SPECIES	6	calm2a (ENSCGOG00000009161)	TTC7A (ENSCGOG00000009140)	mcfd2 (ENSCGOG00000009135)	ENSCGOG00000009126	socs5b (ENSCGOG00000009122) #37	ENSCGOG00000009112	rhoq (ENSCGOG00000009097) #33	mxtx1 (ENSCGOG00000009094) #31	ENSCGOG00000009091 #34	ENSCGOG00000009085 #26	STK32C (ENSCGOG00000008934) #25	ENSCGOG00000008926 #14	PWWP2B (ENSCGOG00000008924) #15	INPP5A (ENSCGOG00000008304) #16	nkx6.2 (ENSCGOG00000008283) #19	valopa (ENSCGOG00000008270) #22	CFAP46 (ENSCGOG00000008262) #24	ENSCGOG00000008256 #24	ENSCGOG00000008249 #11	ENSCGOG00000008239	ENSCGOG00000008231	ADGRA1 (ENSCGOG00000008223) #10	KNDC1 (ENSCGOG00000008214) #9	vox (ENSCGOG00000008212) #8	ENSCGOG00000008208	ENSCGOG00000008206	dntt (ENSCGOG00000008120)	blnk (ENSCGOG00000008100)	ENSCGOG00000008096	CCNJ (ENSCGOG00000008091)	BTAF1 (ENSCGOG00000007499)
Percomorphaceae_D	ANCESTRAL SPECIES	19	ENSGT00940000167263	ENSGT00940000158638	ENSGT00940000154141.B	ENSGT00940000165391	ENSGT00940000164285.a #37	ENSGT00390000013481.c.b.b.d	ENSGT00940000155970 #33	ENSGT00940000154537.lb #31	ENSGT00390000016042 #34	ENSGT00600000084626 #26	ENSGT00940000160573 #25	ENSGT00940000170679	ENSGT00940000160735 #15	ENSGT00390000015226.d #16	ENSGT00940000161547 #19	ENSGT01030000234549.a.b #22	ENSGT00570000079216 #24	ENSGT00940000164278 #11	ENSGT00940000160175.b #10	ENSGT00390000011408 #9	ENSGT00940000165215.a #8	ENSGT00940000165215.b #7	ENSGT00940000164759	ENSGT00940000158584	ENSGT00940000177920	ENSGT00940000155715	ENSGT00940000160595.a.a	ENSGT00940000156981	ENSGT00940000157500	ENSGT00940000158949	ENSGT00390000009948.c
Anabantaria	ANCESTRAL SPECIES	17	ENSGT00950000182980.a.b.b.b	ENSGT00940000167263	ENSGT00940000158638	ENSGT00940000154141.B	ENSGT00940000162292	ENSGT00940000164285.a #37	ENSGT00940000155970 #33	ENSGT00940000154537.lb #31	ENSGT00390000016042 #34	ENSGT00600000084626 #26	ENSGT00940000160573 #25	ENSGT00940000170679	ENSGT00940000160735 #15	ENSGT00390000015226.d #16	ENSGT00940000161547 #19	ENSGT01030000234549.a.b #22	ENSGT00570000079216 #24	ENSGT00940000164278 #11	ENSGT00940000160175.b #10	ENSGT00390000011408 #9	ENSGT00940000165215.a #8	ENSGT00940000165215.b #7	ENSGT00940000164759	ENSGT00940000158584	ENSGT00940000155715	ENSGT00940000160595.a.a	ENSGT00940000156981	ENSGT00940000157500	ENSGT00940000158949	ENSGT00390000009948.c	ENSGT00940000155780
Anabantoidei	ANCESTRAL SPECIES	17	ENSGT00950000182980.a.b.b.b	ENSGT00940000167263	ENSGT00940000158638	ENSGT00940000154141.B	ENSGT00940000162292	ENSGT00940000164285.a #37	ENSGT00940000155970 #33	ENSGT00940000154537.lb #31	ENSGT00390000016042 #34	ENSGT00600000084626 #26	ENSGT00940000160573 #25	ENSGT00940000170679	ENSGT00940000160735 #15	ENSGT00390000015226.d #16	ENSGT00940000161547 #19	ENSGT01030000234549.a.b #22	ENSGT00570000079216 #24	ENSGT00940000164278 #11	ENSGT00940000160175.b #10	ENSGT00390000011408 #9	ENSGT00940000165215.a #8	ENSGT00940000164759	ENSGT00940000158584	ENSGT00940000155715	ENSGT00940000160595.a.a	ENSGT00940000156981	ENSGT00940000157500	ENSGT00940000158949	ENSGT00390000009948.c	ENSGT00940000155780	ENSGT00390000000747
Climbing perch	MODERN SPECIES	6	si:ch211-93n23.7 (ENSATEG00000009420)	TTC7A (ENSATEG00000009434)	mcfd2 (ENSATEG00000009468)	ENSATEG00000009486	socs5b (ENSATEG00000009505) #37	ENSATEG00000009510 #33	ENSATEG00000009520 #31	ENSATEG00000009533 #34	ENSATEG00000009538 #26	ENSATEG00000009581	STK32C (ENSATEG00000009593) #25	ENSATEG00000009604	PWWP2B (ENSATEG00000009620) #15	INPP5A (ENSATEG00000009627) #16	nkx6.2 (ENSATEG00000028200) #19	valopa (ENSATEG00000009727) #22	ENSATEG00000010016 #24	ENSATEG00000010081 #11	ADGRA1 (ENSATEG00000010152) #10	ENSATEG00000025346 #9	ENSATEG00000028993 #9	vox (ENSATEG00000028903) #8	ENSATEG00000010339	dntt (ENSATEG00000010373)	blnk (ENSATEG00000010409)	ENSATEG00000010449	ENSATEG00000010453	BTAF1 (ENSATEG00000010510)	cpeb3 (ENSATEG00000010649)	marchf5 (ENSATEG00000010690)	ENSATEG00000025422
Siamese fighting fish	MODERN SPECIES	6	ENSBSLG00000021077	calm2a (ENSBSLG00000021159)	TTC7A (ENSBSLG00000021328)	mcfd2 (ENSBSLG00000021690)	ENSBSLG00000021713	socs5b (ENSBSLG00000021738) #37	rhoq (ENSBSLG00000021750) #33	mxtx1 (ENSBSLG00000021776) #31	ENSBSLG00000021787 #34	ENSBSLG00000021800 #26	STK32C (ENSBSLG00000021835) #25	ENSBSLG00000021937	PWWP2B (ENSBSLG00000021951) #15	INPP5A (ENSBSLG00000021972) #16	nkx6.2 (ENSBSLG00000022009) #19	valopa (ENSBSLG00000022018) #22	ENSBSLG00000022061	ENSBSLG00000022194 #24	ENSBSLG00000022199 #24	ENSBSLG00000022203 #11	ENSBSLG00000022215 #10	ENSBSLG00000022229 #9	ENSBSLG00000022244 #9	vox (ENSBSLG00000022246) #8	vox (ENSBSLG00000022251) #8	ENSBSLG00000002274	dntt (ENSBSLG00000002392)	blnk (ENSBSLG00000002470)	ENSBSLG00000002535	CCNJ (ENSBSLG00000002548)	BTAF1 (ENSBSLG00000002717)
Zig-zag eel	DUPLICATION
Zig-zag eel	MODERN SPECIES	6	calm2a (ENSMAMG00000010998)	si:ch211-93n23.7 (ENSMAMG00000011013)	TTC7A (ENSMAMG00000011025)	mcfd2 (ENSMAMG00000011042)	ENSMAMG00000011055	socs5b (ENSMAMG00000011056) #37	ENSMAMG00000027941 #33	ENSMAMG00000011075 #31	ENSMAMG00000011092 #34	ENSMAMG00000011112 #26	STK32C (ENSMAMG00000011136) #25	ENSMAMG00000011167	PWWP2B (ENSMAMG00000011185) #15	INPP5A (ENSMAMG00000011199) #16	nkx6.2 (ENSMAMG00000026922) #19	ENSMAMG00000011294 #22	ENSMAMG00000024517 #24	ENSMAMG00000027819 #24	ENSMAMG00000012497 #24	ENSMAMG00000012514 #11	ENSMAMG00000012538	ENSMAMG00000012543	ADGRA1 (ENSMAMG00000012554) #10	KNDC1 (ENSMAMG00000012563) #9	vox (ENSMAMG00000012590) #8	ENSMAMG00000026979 #7	ENSMAMG00000012605	dntt (ENSMAMG00000012615)	blnk (ENSMAMG00000012653)	ENSMAMG00000012688	ENSMAMG00000012696
Zig-zag eel	MODERN SPECIES	54																ENSMAMG00000018378 #22
Carangaria	ANCESTRAL SPECIES	19	ENSGT00940000167263	ENSGT00940000158638	ENSGT00940000154141.B	ENSGT00940000165391	ENSGT00940000164285.a #37	ENSGT00390000013481.c.b.b.d	ENSGT00940000155970 #33	ENSGT00940000154537.lb #31	ENSGT00390000016042 #34	ENSGT00600000084626 #26	ENSGT00940000160573 #25	ENSGT00940000170679	ENSGT00940000160735 #15	ENSGT00390000015226.d #16	ENSGT00940000161547 #19	ENSGT01030000234549.a.b #22	ENSGT00570000079216 #24	ENSGT00940000164278 #11	ENSGT00940000160175.b #10	ENSGT00390000011408 #9	ENSGT00940000165215.a #8	ENSGT00940000165215.b #7	ENSGT00940000164759	ENSGT00940000158584	ENSGT00940000177920	ENSGT00940000155715	ENSGT00940000160595.a.a	ENSGT00940000156981	ENSGT00940000157500	ENSGT00940000158949	ENSGT00390000009948.c
Pleuronectoidei	ANCESTRAL SPECIES	28	ENSGT00940000167711.a.b	ENSGT00950000182980.a.b.b.b	ENSGT00940000167263	ENSGT00940000158638	ENSGT00940000154141.B	ENSGT00940000165391	ENSGT00940000164285.a #37	ENSGT00940000155970 #33	ENSGT00940000154537.lb #31	ENSGT00390000016042 #34	ENSGT00600000084626 #26	ENSGT00940000160573 #25	ENSGT00940000160735 #15	ENSGT00390000015226.d #16	ENSGT00940000161547 #19	ENSGT01030000234549.a.b #22	ENSGT00570000079216 #24	ENSGT00940000164278 #11	ENSGT00940000160175.b #10	ENSGT00390000011408 #9	ENSGT00940000165215.a #8	ENSGT00940000164759	ENSGT00940000158584	ENSGT00940000155715	ENSGT00940000160595.a.a	ENSGT00940000156981	ENSGT00940000157500	ENSGT00940000158949	ENSGT00390000009948.c	ENSGT00940000155780	ENSGT00390000000747
Turbot	MODERN SPECIES	6	ENSSMAG00000015375	ENSSMAG00000023870	ENSSMAG00000015338	ENSSMAG00000015262	mcfd2 (ENSSMAG00000026884)	ENSSMAG00000015240	socs5b (ENSSMAG00000015236) #37	ENSSMAG00000032665 #33	ENSSMAG00000015185 #31	ENSSMAG00000029523 #34	ENSSMAG00000015139 #26	STK32C (ENSSMAG00000015069) #25	PWWP2B (ENSSMAG00000015035) #15	INPP5A (ENSSMAG00000014975) #16	nkx6.2 (ENSSMAG00000035901) #19	valopa (ENSSMAG00000014945) #22	ENSSMAG00000014810 #24	ENSSMAG00000014747 #11	ENSSMAG00000014683 #10	KNDC1 (ENSSMAG00000014581) #9	vox (ENSSMAG00000014574) #8	ENSSMAG00000014568	dntt (ENSSMAG00000014542)	blnk (ENSSMAG00000014278)	ENSSMAG00000014259	ENSSMAG00000014232	BTAF1 (ENSSMAG00000014035)	cpeb3 (ENSSMAG00000013924)	marchf5 (ENSSMAG00000013888)	ide (ENSSMAG00000013822)	kmo (ENSSMAG00000013784)
Tongue sole	MODERN SPECIES	3	ikzf1 (ENSCSEG00000008620)	vwc2 (ENSCSEG00000009963)	MOCOS (ENSCSEG00000009978)	zgc:110045 (ENSCSEG00000010020)	si:ch211-117n7.7 (ENSCSEG00000010068)	tm9sf3 (ENSCSEG00000010093)	prdx3 (ENSCSEG00000010149)	sfxn4 (ENSCSEG00000010159)	dennd10 (ENSCSEG00000010175)	vox (ENSCSEG00000010208) #8	ENSCSEG00000010212	KNDC1 (ENSCSEG00000010219) #9	ADGRA1 (ENSCSEG00000010321) #10	ENSCSEG00000010432 #11	ENSCSEG00000010456 #24	valopa (ENSCSEG00000010484) #22	nkx6.2 (ENSCSEG00000010490) #19	INPP5A (ENSCSEG00000010496) #16	PWWP2B (ENSCSEG00000010521) #15	STK32C (ENSCSEG00000010530) #25	ENSCSEG00000010547 #26	tmem254 (ENSCSEG00000010559) #34	mxtx1 (ENSCSEG00000010567) #31	rhoq (ENSCSEG00000010572) #33	socs5b (ENSCSEG00000010578) #37	prorsd1 (ENSCSEG00000010585)	usp54a (ENSCSEG00000010597)	ENSCSEG00000010648	ENSCSEG00000010689	mad2l1bp (ENSCSEG00000010706)	mgme1 (ENSCSEG00000010715)
Carangaria_A	ANCESTRAL SPECIES	31	ENSGT00940000167263	ENSGT00940000158638	ENSGT00940000154141.B	ENSGT00940000165391	ENSGT00940000164285.a #37	ENSGT00390000013481.c.b.b.d	ENSGT00940000155970 #33	ENSGT00940000154537.lb #31	ENSGT00390000016042 #34	ENSGT00600000084626 #26	ENSGT00940000160573 #25	ENSGT00940000170679	ENSGT00940000160735 #15	ENSGT00390000015226.d #16	ENSGT00940000161547 #19	ENSGT01030000234549.a.b #22	ENSGT00570000079216 #24	ENSGT00940000164278 #11	ENSGT00940000160175.b #10	ENSGT00390000011408 #9	ENSGT00940000165215.a #8	ENSGT00940000165215.b #7	ENSGT00940000164759	ENSGT00940000158584	ENSGT00940000177920	ENSGT00940000155715	ENSGT00940000160595.a.a	ENSGT00940000156981	ENSGT00940000157500	ENSGT00940000158949	ENSGT00390000009948.c
Seriola	ANCESTRAL SPECIES	14	ENSGT00940000167263	ENSGT00940000158638	ENSGT00940000154141.B	ENSGT00940000165391	ENSGT00940000164285.a #37	ENSGT00390000013481.c.b.b.d	ENSGT00940000155970 #33	ENSGT00940000154537.lb #31	ENSGT00390000016042 #34	ENSGT00600000084626 #26	ENSGT00940000160573 #25	ENSGT00940000170679	ENSGT00940000160735 #15	ENSGT00390000015226.d #16	ENSGT00940000161547 #19	ENSGT01030000234549.a.b #22	ENSGT00570000079216 #24	ENSGT00940000164278 #11	ENSGT00940000160175.b #10	ENSGT00390000011408 #9	ENSGT00940000165215.a #8	ENSGT00940000165215.b #7	ENSGT00940000164759	ENSGT00940000158584	ENSGT00940000177920	ENSGT00940000155715	ENSGT00940000160595.a.a	ENSGT00940000156981	ENSGT00940000157500	ENSGT00940000158949	ENSGT00390000009948.c
Greater amberjack	MODERN SPECIES	30	ENSSDUG00000000341	TTC7A (ENSSDUG00000000264)	mcfd2 (ENSSDUG00000000233)	ENSSDUG00000000218	socs5b (ENSSDUG00000000213) #37	ENSSDUG00000000164	rhoq (ENSSDUG00000000093) #33	mxtx1 (ENSSDUG00000020571) #31	ENSSDUG00000020551 #34	ENSSDUG00000020529 #26	STK32C (ENSSDUG00000020492) #25	ENSSDUG00000020451	PWWP2B (ENSSDUG00000020437) #15	INPP5A (ENSSDUG00000020408) #16	nkx6.2 (ENSSDUG00000020400) #19	valopa (ENSSDUG00000020386) #22	ENSSDUG00000020270 #24	ENSSDUG00000020219 #11	ADGRA1 (ENSSDUG00000020182) #10	KNDC1 (ENSSDUG00000020142) #9	vox (ENSSDUG00000020133) #8	ENSSDUG00000020122 #7	ENSSDUG00000020119	dntt (ENSSDUG00000019989)	blnk (ENSSDUG00000019940)	ENSSDUG00000019928	CCNJ (ENSSDUG00000019912)	BTAF1 (ENSSDUG00000019837)	cpeb3 (ENSSDUG00000019766)	marchf5 (ENSSDUG00000019714)	ide (ENSSDUG00000019622)
Yellowtail amberjack	MODERN SPECIES	3109	si:ch211-93n23.7 (ENSSLDG00000000731)	TTC7A (ENSSLDG00000000654)	mcfd2 (ENSSLDG00000000632)	ENSSLDG00000000608	socs5b (ENSSLDG00000000598) #37	ENSSLDG00000000354	rhoq (ENSSLDG00000000306) #33	mxtx1 (ENSSLDG00000000243) #31	ENSSLDG00000000212 #34	ENSSLDG00000000123 #26	STK32C (ENSSLDG00000021935) #25	ENSSLDG00000021920	PWWP2B (ENSSLDG00000021915) #15	INPP5A (ENSSLDG00000021836) #16	nkx6.2 (ENSSLDG00000021824) #19	valopa (ENSSLDG00000021805) #22	ENSSLDG00000021778 #24	ENSSLDG00000021755 #11	ADGRA1 (ENSSLDG00000021741) #10	ENSSLDG00000021735 #9	vox (ENSSLDG00000021724) #8	ENSSLDG00000021719 #7	ENSSLDG00000021711	dntt (ENSSLDG00000021672)	ENSSLDG00000021663	ENSSLDG00000021654	ENSSLDG00000021646	CCNJ (ENSSLDG00000021633)	BTAF1 (ENSSLDG00000021505)	cpeb3 (ENSSLDG00000021438)	marchf5 (ENSSLDG00000021414)
Barramundi perch	DUPLICATION
Barramundi perch	MODERN SPECIES	412																valopa (ENSLCAG00010000719) #22	ENSLCAG00010000708	ENSLCAG00010000703 #24	ENSLCAG00010000653 #24	ENSLCAG00010000636 #11	ADGRA1 (ENSLCAG00010000600) #10	ENSLCAG00010000577 #9
Barramundi perch	MODERN SPECIES	1789																ENSLCAG00010020082 #22
Tiger tail seahorse	MODERN SPECIES	312	ENSHCOG00000006353	TTC7A (ENSHCOG00000006324)	ENSHCOG00000006192	haao (ENSHCOG00000006185)	ENSHCOG00000006175	socs5b (ENSHCOG00000006168) #37	ENSHCOG00000006164	rhoq (ENSHCOG00000006151) #33	mxtx1 (ENSHCOG00000006137) #31	ENSHCOG00000006124 #34	ENSHCOG00000006113 #26	STK32C (ENSHCOG00000006092) #25	PWWP2B (ENSHCOG00000006074) #15	INPP5A (ENSHCOG00000006054) #16	nkx6.2 (ENSHCOG00000006009) #19	valopa (ENSHCOG00000005999) #22	ENSHCOG00000005988 #24	ENSHCOG00000005951 #11	ADGRA1 (ENSHCOG00000005931) #10	ENSHCOG00000005916 #9	vox (ENSHCOG00000005907) #8	ENSHCOG00000005890	dntt (ENSHCOG00000005887)	ENSHCOG00000005860	ENSHCOG00000005851	CCNJ (ENSHCOG00000005843)	BTAF1 (ENSHCOG00000005812)	cpeb3 (ENSHCOG00000005747)	marchf5 (ENSHCOG00000005713)	ENSHCOG00000005693	ide (ENSHCOG00000005681)
Pinecone sodierfish	MODERN SPECIES	6	calm2a (ENSMMDG00005021233)	si:ch211-93n23.7 (ENSMMDG00005021220)	TTC7A (ENSMMDG00005021216)	mcfd2 (ENSMMDG00005021213)	ENSMMDG00005021212	socs5b (ENSMMDG00005021211) #37	rhoq (ENSMMDG00005021207) #33	mxtx1 (ENSMMDG00005021204) #31	tmem254 (ENSMMDG00005021203) #34	ENSMMDG00005021198 #26	STK32C (ENSMMDG00005021182) #25	LRRC27 (ENSMMDG00005021176) #14	PWWP2B (ENSMMDG00005021175) #15	INPP5A (ENSMMDG00005020875) #16	nkx6.2 (ENSMMDG00005020858) #19	valopa (ENSMMDG00005020837) #22	ENSMMDG00005020834 #24	ENSMMDG00005020830 #11	ADGRA1 (ENSMMDG00005020626) #10	ENSMMDG00005020597 #9	vox (ENSMMDG00005020596) #8	ENSMMDG00005020593 #7	ENSMMDG00005020592	dntt (ENSMMDG00005020116)	ENSMMDG00005020089	ENSMMDG00005020085	ENSMMDG00005020082	CCNJ (ENSMMDG00005020076)	BTAF1 (ENSMMDG00005017880)	cpeb3 (ENSMMDG00005017732)	marchf5 (ENSMMDG00005017709)
Cod	MODERN SPECIES	6	ENSGMOG00000006917	calm2a (ENSGMOG00000035072)	ENSGMOG00000023737	TTC7A (ENSGMOG00000029809)	ENSGMOG00000006867	mcfd2 (ENSGMOG00000026763)	ENSGMOG00000006852	ENSGMOG00000029837 #33	ENSGMOG00000023749 #31	ENSGMOG00000001725 #34	ENSGMOG00000001694 #26	STK32C (ENSGMOG00000001734) #25	ENSGMOG00000036145	PWWP2B (ENSGMOG00000001770) #15	nkx6.2 (ENSGMOG00000033363) #19	valopa (ENSGMOG00000009622) #22	ENSGMOG00000035697 #24	ENSGMOG00000017488 #24	ENSGMOG00000036116	ENSGMOG00000024400	ENSGMOG00000029682	ENSGMOG00000024120	ENSGMOG00000029967	ENSGMOG00000024618	ENSGMOG00000024349 #11	ENSGMOG00000033324	ENSGMOG00000026971	ADGRA1 (ENSGMOG00000035007) #10	ENSGMOG00000029976 #9	ENSGMOG00000035229 #9	vox (ENSGMOG00000007231) #8
Protacanthopterygii	ANCESTRAL SPECIES	39	ENSGT00940000158638	ENSGT00940000154141.B	ENSGT00940000165391	ENSGT00940000164285.a #37	ENSGT00390000013481.c.b.b	ENSGT00940000155970 #33	ENSGT00940000154537.lb #31	ENSGT00390000016042 #34	ENSGT00600000084626 #26	ENSGT00940000160573 #25	ENSGT00390000007203 #14	ENSGT00940000160735 #15	ENSGT00940000158240	ENSGT00390000015226.d #16	ENSGT00940000161547 #19	ENSGT01030000234549.a.b #22	ENSGT00570000079216 #24	ENSGT00940000164278 #11	ENSGT00940000160175.b #10	ENSGT00390000011408 #9	ENSGT00940000165215.a #8	ENSGT00940000165215.b #7	ENSGT00940000164759	ENSGT00940000158584	ENSGT00940000155715	ENSGT00940000160595.a.a	ENSGT00940000156981	ENSGT00940000156590	ENSGT00940000157500	ENSGT00940000158949	ENSGT00390000009948.c
Salmoninae	DUPLICATION
Salmoninae	ANCESTRAL SPECIES	61	ENSGT00950000182980.a.b.b.b.fc	ENSGT00940000167263	ENSGT00940000158638.c	ENSGT00940000154141.B.hb	ENSGT00940000165391.e	ENSGT00940000164285.a.b #37	ENSGT00940000155970.z.b #33	ENSGT00940000154537.lb.c #31	ENSGT00600000084626.e #26	ENSGT00940000160573.i #25	ENSGT00390000007203 #14	ENSGT00940000160735.b #15	ENSGT00940000158240.o.a.a	ENSGT00390000015226.d.i #16	ENSGT00940000161547.a #19	ENSGT01030000234549.a.b.g #22	ENSGT00940000164278.a #11	ENSGT00940000160175.b.b #10	ENSGT00390000011408.r.b #9	ENSGT00940000165215.a.g #8	ENSGT00940000165215.b.c #7	ENSGT00940000164759.c	ENSGT00940000158584.e	ENSGT00940000155715.ob.a	ENSGT00940000160595.a.a.b	ENSGT00940000156981	ENSGT00940000156590.qb	ENSGT00940000157500.e	ENSGT00940000158949.f	ENSGT00390000009948.c.e	ENSGT00940000155780.g
Salmoninae_a	ANCESTRAL SPECIES	71	ENSGT00950000182980.a.b.b.b.fc	ENSGT00940000167263	ENSGT00940000158638.c	ENSGT00940000154141.B.hb	ENSGT00940000165391.e	ENSGT00940000164285.a.b #37	ENSGT00940000155970.z.b #33	ENSGT00940000154537.lb.c #31	ENSGT00600000084626.e #26	ENSGT00940000160573.i #25	ENSGT00390000007203 #14	ENSGT00940000160735.b #15	ENSGT00940000158240.o.a.a	ENSGT00390000015226.d.i #16	ENSGT00940000161547.a #19	ENSGT01030000234549.a.b.g #22	ENSGT00940000164278.a #11	ENSGT00940000160175.b.b #10	ENSGT00390000011408.r.b #9	ENSGT00940000165215.a.g #8	ENSGT00940000165215.b.c #7	ENSGT00940000164759.c	ENSGT00940000158584.e	ENSGT00940000155715.ob.a	ENSGT00940000160595.a.a.b	ENSGT00940000156981	ENSGT00940000156590.qb	ENSGT00940000157500.e	ENSGT00940000158949.f	ENSGT00390000009948.c.e	ENSGT00940000155780.g
Salmo	ANCESTRAL SPECIES	29	ENSGT00950000182980.a.b.b.b.fc	ENSGT00940000167263	ENSGT00940000158638.c	ENSGT00940000154141.B.hb	ENSGT00940000165391.e	ENSGT00940000164285.a.b #37	ENSGT00940000155970.z.b #33	ENSGT00940000154537.lb.c #31	ENSGT00600000084626.e #26	ENSGT00940000160573.i #25	ENSGT00390000007203 #14	ENSGT00940000160735.b #15	ENSGT00940000158240.o.a.a	ENSGT00390000015226.d.i #16	ENSGT00940000161547.a #19	ENSGT01030000234549.a.b.g #22	ENSGT00940000164278.a #11	ENSGT00940000160175.b.b #10	ENSGT00390000011408.r.b #9	ENSGT00940000165215.a.g #8	ENSGT00940000165215.b.c #7	ENSGT00940000164759.c	ENSGT00940000158584.e	ENSGT00940000155715.ob.a	ENSGT00940000160595.a.a.b	ENSGT00940000156981	ENSGT00940000156590.qb	ENSGT00940000157500.e	ENSGT00940000158949.f	ENSGT00390000009948.c.e	ENSGT00940000155780.g
River trout	MODERN SPECIES	35	si:ch211-93n23.7 (ENSSTUG00000000852)	TTC7A (ENSSTUG00000000889)	mcfd2 (ENSSTUG00000000972)	ENSSTUG00000000979	socs5b (ENSSTUG00000000983) #37	rhoq (ENSSTUG00000000990) #33	mxtx1 (ENSSTUG00000000998) #31	ENSSTUG00000001011	ENSSTUG00000001013 #26	STK32C (ENSSTUG00000001052) #25	LRRC27 (ENSSTUG00000001132) #14	PWWP2B (ENSSTUG00000001147) #15	csad (ENSSTUG00000001209)	INPP5A (ENSSTUG00000001855) #16	nkx6.2 (ENSSTUG00000002355) #19	valopa (ENSSTUG00000002359) #22	ENSSTUG00000002386 #11	ADGRA1 (ENSSTUG00000002423) #10	ENSSTUG00000002521	KNDC1 (ENSSTUG00000002537) #9	vox (ENSSTUG00000002610) #8	ENSSTUG00000002622 #7	ENSSTUG00000002643	dntt (ENSSTUG00000002660)	blnk (ENSSTUG00000002735)	ENSSTUG00000002791	CCNJ (ENSSTUG00000002803)	ENSSTUG00000002818	BTAF1 (ENSSTUG00000003038)	cpeb3 (ENSSTUG00000007732)	marchf5 (ENSSTUG00000007796)
Atlantic salmon	MODERN SPECIES	9	cssa18h2orf61 (ENSSSAG00000067311)	ENSSSAG00000097460	TTC7A (ENSSSAG00000067301)	ENSSSAG00000067292	ENSSSAG00000067289 #37	ENSSSAG00000122159 #33	ENSSSAG00000112162 #31	ENSSSAG00000067266 #26	ENSSSAG00000086684	STK32C (ENSSSAG00000067124) #25	ENSSSAG00000104485	PWWP2B (ENSSSAG00000067115) #15	ENSSSAG00000065855	INPP5A (ENSSSAG00000065803) #16	nkx6.2 (ENSSSAG00000065797) #19	valopa (ENSSSAG00000065787) #22	ENSSSAG00000088138 #11	ADGRA1 (ENSSSAG00000065761) #10	KNDC1 (ENSSSAG00000065748) #9	vox (ENSSSAG00000065728) #8	ENSSSAG00000065726 #7	ENSSSAG00000065716	dntt (ENSSSAG00000065644)	blnk (ENSSSAG00000065613)	ENSSSAG00000065602	ENSSSAG00000065592	ENSSSAG00000096692	BTAF1 (ENSSSAG00000057145)	cpeb3 (ENSSSAG00000056801)	marchf5 (ENSSSAG00000056762)	ide (ENSSSAG00000053985)
Oncorhynchus	ANCESTRAL SPECIES	2	ENSGT00950000182980.a.b.b.b.fc	ENSGT00940000167263	ENSGT00940000158638.c	ENSGT00940000154141.B.hb	ENSGT00940000165391.e	ENSGT00940000164285.a.b #37	ENSGT00940000155970.z.b #33	ENSGT00940000154537.lb.c #31	ENSGT00600000084626.e #26	ENSGT00940000160573.i #25	ENSGT00390000007203 #14	ENSGT00940000160735.b #15	ENSGT00940000158240.o.a.a	ENSGT00390000015226.d.i #16	ENSGT00940000161547.a #19	ENSGT01030000234549.a.b.g #22	ENSGT00940000164278.a #11	ENSGT00940000160175.b.b #10	ENSGT00390000011408.r.b #9	ENSGT00940000165215.a.g #8	ENSGT00940000165215.b.c #7	ENSGT00940000164759.c	ENSGT00940000158584.e	ENSGT00940000155715.ob.a	ENSGT00940000160595.a.a.b	ENSGT00940000156981	ENSGT00940000157500.e	ENSGT00940000158949.f	ENSGT00390000009948.c.e	ENSGT00940000155780.g	ENSGT00390000000747.m
Oncorhynchus_a	ANCESTRAL SPECIES	1	ENSGT00950000182980.a.b.b.b.fc	ENSGT00940000167263	ENSGT00940000158638.c	ENSGT00940000154141.B.hb	ENSGT00940000165391.e	ENSGT00940000164285.a.b #37	ENSGT00940000155970.z.b #33	ENSGT00940000154537.lb.c #31	ENSGT00600000084626.e #26	ENSGT00940000160573.i #25	ENSGT00390000007203 #14	ENSGT00940000160735.b #15	ENSGT00940000158240.o.a.a	ENSGT00390000015226.d.i #16	ENSGT00940000161547.a #19	ENSGT01030000234549.a.b.g #22	ENSGT00940000164278.a #11	ENSGT00940000160175.b.b #10	ENSGT00390000011408.r.b #9	ENSGT00940000165215.a.g #8	ENSGT00940000165215.b.c #7	ENSGT00940000164759.c	ENSGT00940000158584.e	ENSGT00940000155715.ob.a	ENSGT00940000160595.a.a.b	ENSGT00940000156981	ENSGT00940000157500.e	ENSGT00940000158949.f	ENSGT00390000009948.c.e	ENSGT00940000155780.g	ENSGT00390000000747.m
Chinook salmon	MODERN SPECIES	30	ENSOTSG00005020052	calm2a (ENSOTSG00005020051)	si:ch211-93n23.7 (ENSOTSG00005020050)	TTC7A (ENSOTSG00005045631)	mcfd2 (ENSOTSG00005045630)	ENSOTSG00005045629	rhoq (ENSOTSG00005045627) #33	mxtx1 (ENSOTSG00005045626) #31	ENSOTSG00005045624 #26	STK32C (ENSOTSG00005045461) #25	ENSOTSG00005045458 #14	PWWP2B (ENSOTSG00005045456) #15	csad (ENSOTSG00005045122)	INPP5A (ENSOTSG00005045087) #16	nkx6.2 (ENSOTSG00005045086) #19	valopa (ENSOTSG00005045085) #22	ENSOTSG00005045083 #11	ADGRA1 (ENSOTSG00005044945) #10	KNDC1 (ENSOTSG00005044931) #9	vox (ENSOTSG00005044929) #8	ENSOTSG00005044927 #7	ENSOTSG00005044926	dntt (ENSOTSG00005044826)	ENSOTSG00005044824	ENSOTSG00005044823	CCNJ (ENSOTSG00005044822)	BTAF1 (ENSOTSG00005044677)	cpeb3 (ENSOTSG00005044646)	marchf5 (ENSOTSG00005044644)	ide (ENSOTSG00005044060)	kmo (ENSOTSG00005044050)
Coho salmon	MODERN SPECIES	24	si:ch211-93n23.7 (ENSOKIG00005011548)	TTC7A (ENSOKIG00005011519)	ENSOKIG00005011497	socs5b (ENSOKIG00005011485) #37	ENSOKIG00005011443 #33	ENSOKIG00005011432 #31	mcfd2 (ENSOKIG00005011417)	ENSOKIG00005011401	ENSOKIG00005011149 #26	LRRC27 (ENSOKIG00005011091) #14	PWWP2B (ENSOKIG00005011077) #15	csad (ENSOKIG00005010723)	INPP5A (ENSOKIG00005010375) #16	nkx6.2 (ENSOKIG00005010347) #19	ENSOKIG00005010345	valopa (ENSOKIG00005010333) #22	ENSOKIG00005010320	ENSOKIG00005010310 #11	ADGRA1 (ENSOKIG00005010100) #10	ENSOKIG00005010067 #9	ENSOKIG00005010056 #9	vox (ENSOKIG00005010048) #8	ENSOKIG00005010043 #7	ENSOKIG00005010036	dntt (ENSOKIG00005009711)	ENSOKIG00005009650	ENSOKIG00005009640	CCNJ (ENSOKIG00005009635)	BTAF1 (ENSOKIG00005008535)	cpeb3 (ENSOKIG00005008299)	marchf5 (ENSOKIG00005008211)
Rainbow trout	MODERN SPECIES		calm2a (ENSOMYG00000025867)	si:ch211-93n23.7 (ENSOMYG00000025740)	TTC7A (ENSOMYG00000025716)	mcfd2 (ENSOMYG00000025666)	ENSOMYG00000025655	socs5b (ENSOMYG00000025644) #37	ENSOMYG00000025627 #33	ENSOMYG00000025603 #31	ENSOMYG00000069861 #26	STK32C (ENSOMYG00000025216) #25	LRRC27 (ENSOMYG00000024922) #14	PWWP2B (ENSOMYG00000024888) #15	ENSOMYG00000024325	INPP5A (ENSOMYG00000023695) #16	nkx6.2 (ENSOMYG00000023516) #19	valopa (ENSOMYG00000023494) #22	ENSOMYG00000066860	ENSOMYG00000023469 #11	ADGRA1 (ENSOMYG00000023227) #10	ENSOMYG00000063671 #9	ENSOMYG00000023039 #9	vox (ENSOMYG00000022992) #8	ENSOMYG00000022970 #7	ENSOMYG00000022960	dntt (ENSOMYG00000022843)	ENSOMYG00000022758	ENSOMYG00000022726	ENSOMYG00000059912	ENSOMYG00000022716	ENSOMYG00000066160	BTAF1 (ENSOMYG00000017095)
Huchen	MODERN SPECIES	10	calm2a (ENSHHUG00000020730)	si:ch211-93n23.7 (ENSHHUG00000020883)	TTC7A (ENSHHUG00000020888)	mcfd2 (ENSHHUG00000020904)	ENSHHUG00000020907	socs5b (ENSHHUG00000020918) #37	rhoq (ENSHHUG00000020923) #33	mxtx1 (ENSHHUG00000020946) #31	ENSHHUG00000020947 #26	STK32C (ENSHHUG00000020972) #25	LRRC27 (ENSHHUG00000021016) #14	PWWP2B (ENSHHUG00000021051) #15	csad (ENSHHUG00000021064)	INPP5A (ENSHHUG00000021230) #16	nkx6.2 (ENSHHUG00000021277) #19	valopa (ENSHHUG00000021286) #22	ENSHHUG00000021300 #11	ENSHHUG00000021307	ENSHHUG00000021316 #10	ADGRA1 (ENSHHUG00000021321) #10	KNDC1 (ENSHHUG00000021340) #9	vox (ENSHHUG00000021396) #8	ENSHHUG00000021397 #7	ENSHHUG00000021403
Salmoninae	ANCESTRAL SPECIES	380	ENSGT00950000182980.a.b.b.b.ec	ENSGT00940000158638.d	ENSGT00940000154141.B.ib	ENSGT00940000165391.f	ENSGT00940000164285.a.a #37	ENSGT00390000013481.c.b.b	ENSGT00940000155970.z.a #33	ENSGT00940000154537.lb.d #31	ENSGT00390000016042 #34	ENSGT00600000084626.f #26	ENSGT00940000160573.j #25	ENSGT00940000160735.a #15	ENSGT00940000158240.o.b	ENSGT00390000015226.d.j #16	ENSGT00940000161547.b #19	ENSGT01030000234549.a.b.h #22	ENSGT00570000079216 #24	ENSGT00940000164278.b #11	ENSGT00940000160175.b.a #10	ENSGT00390000011408.r.a #9	ENSGT00940000165215.a.h #8	ENSGT00940000165215.b.d #7	ENSGT00940000164759.d
Salmoninae_a	ANCESTRAL SPECIES	16	ENSGT00950000182980.a.b.b.b.ec	ENSGT00940000158638.d	ENSGT00940000154141.B.ib	ENSGT00940000165391.f	ENSGT00940000164285.a.a #37	ENSGT00390000013481.c.b.b	ENSGT00940000155970.z.a #33	ENSGT00940000154537.lb.d #31	ENSGT00390000016042 #34	ENSGT00600000084626.f #26	ENSGT00940000160573.j #25	ENSGT00940000160735.a #15	ENSGT00940000158240.o.b	ENSGT00390000015226.d.j #16	ENSGT00940000161547.b #19	ENSGT01030000234549.a.b.h #22	ENSGT00570000079216 #24	ENSGT00940000164278.b #11	ENSGT00940000160175.b.a #10	ENSGT00390000011408.r.a #9	ENSGT00940000165215.a.h #8	ENSGT00940000165215.b.d #7	ENSGT00940000164759.d	ENSGT00940000158584.f	ENSGT00940000155715.ob.b	ENSGT00940000160595.a.a.a	ENSGT00940000157500.f	ENSGT00940000158949.e	ENSGT00390000009948.c.f	ENSGT00940000155780.h	ENSGT00390000000747.n
Salmo	ANCESTRAL SPECIES	23	ENSGT00950000182980.a.b.b.b.ec	ENSGT00940000158638.d	ENSGT00940000154141.B.ib	ENSGT00970000197742	ENSGT00940000164285.a.a #37	ENSGT00390000013481.c.b.b	ENSGT00940000155970.z.a #33	ENSGT00940000154537.lb.d #31	ENSGT00390000016042 #34	ENSGT00600000084626.f #26	ENSGT00940000160573.j #25	ENSGT00940000160735.a #15	ENSGT00940000158240.o.b	ENSGT00390000015226.d.j #16	ENSGT00940000161547.b #19	ENSGT01030000234549.a.b.h #22	ENSGT00570000079216 #24	ENSGT00940000164278.b #11	ENSGT00940000160175.b.a #10	ENSGT00390000011408.r.a #9	ENSGT00940000165215.a.h #8	ENSGT00940000165215.b.d #7	ENSGT00940000164759.d	ENSGT00940000158584.f	ENSGT00940000155715.ob.b	ENSGT00940000160595.a.a.a	ENSGT00940000157500.f	ENSGT00940000158949.e	ENSGT00390000009948.c.f	ENSGT00940000155780.h	ENSGT00390000000747.n
Atlantic salmon	MODERN SPECIES		calm2a (ENSSSAG00000001376)	TTC7A (ENSSSAG00000001340)	mcfd2 (ENSSSAG00000001329)	prop1 (ENSSSAG00000001323)	socs5b (ENSSSAG00000097820) #37	ENSSSAG00000001313	rhoq (ENSSSAG00000001304) #33	ENSSSAG00000121086 #31	tmem254 (ENSSSAG00000001290) #34	ENSSSAG00000001279 #26	ENSSSAG00000001166 #25	pwwp2b (ENSSSAG00000001133) #15	ENSSSAG00000000768	nkx6.2 (ENSSSAG00000084986) #19	INPP5A (ENSSSAG00000000258) #16	valopa (ENSSSAG00000000113) #22	ENSSSAG00000110915	ENSSSAG00000086987	ENSSSAG00000112748 #24	ENSSSAG00000091844	ENSSSAG00000031576 #11	ENSSSAG00000097660	ADGRA1 (ENSSSAG00000030734) #10	KNDC1 (ENSSSAG00000029462) #9	vox (ENSSSAG00000083961) #8	ENSSSAG00000028855 #7	ENSSSAG00000093236	dntt (ENSSSAG00000024940)	blnk (ENSSSAG00000023874)	ENSSSAG00000023736	BTAF1 (ENSSSAG00000015616)
River trout	MODERN SPECIES	9	calm2a (ENSSTUG00000012369)	TTC7A (ENSSTUG00000012255)	mcfd2 (ENSSTUG00000012244)	prop1 (ENSSTUG00000012235)	ENSSTUG00000012192	ENSSTUG00000012154	rhoq (ENSSTUG00000012127) #33	mxtx1 (ENSSTUG00000012120) #31	tmem254 (ENSSTUG00000012106) #34	ENSSTUG00000012069 #26	STK32C (ENSSTUG00000011947) #25	PWWP2B (ENSSTUG00000011936) #15	csad (ENSSTUG00000010245)	INPP5A (ENSSTUG00000009965) #16	nkx6.2 (ENSSTUG00000009952) #19	valopa (ENSSTUG00000009926) #22	CFAP46 (ENSSTUG00000009803) #24	ENSSTUG00000009781 #11	ADGRA1 (ENSSTUG00000009543) #10	KNDC1 (ENSSTUG00000009511) #9	vox (ENSSTUG00000009491) #8	ENSSTUG00000009480 #7	ENSSTUG00000009471	dntt (ENSSTUG00000009420)	ENSSTUG00000009349	ENSSTUG00000009344	BTAF1 (ENSSTUG00000008964)	cpeb3 (ENSSTUG00000008786)	marchf5 (ENSSTUG00000008753)	ide (ENSSTUG00000008606)	kmo (ENSSTUG00000008056)
Oncorhynchus	ANCESTRAL SPECIES	17	ENSGT00950000182980.a.b.b.b.ec	ENSGT00940000158638.d	ENSGT00940000154141.B.ib	ENSGT00940000165391.f	ENSGT00940000164285.a.a #37	ENSGT00390000013481.c.b.b	ENSGT00940000155970.z.a #33	ENSGT00940000154537.lb.d #31	ENSGT00390000016042 #34	ENSGT00600000084626.f #26	ENSGT00940000160573.j #25	ENSGT00940000160735.a #15	ENSGT00940000158240.o.b	ENSGT00390000015226.d.j #16	ENSGT00940000161547.b #19	ENSGT01030000234549.a.b.h #22	ENSGT00570000079216 #24	ENSGT00940000164278.b #11	ENSGT00940000160175.b.a #10	ENSGT00390000011408.r.a #9	ENSGT01050000248004	ENSGT00940000164759.d	ENSGT00940000158584.f	ENSGT00940000155715.ob.b	ENSGT00940000160595.a.a.a	ENSGT00940000157500.f	ENSGT00940000158949.e	ENSGT00390000009948.c.f	ENSGT00940000155780.h	ENSGT00390000000747.n	ENSGT01100000263502.A.a.b.l
Oncorhynchus_a	ANCESTRAL SPECIES	13	ENSGT00950000182980.a.b.b.b.ec	ENSGT00940000158638.d	ENSGT00940000154141.B.ib	ENSGT00940000165391.f	ENSGT00940000164285.a.a #37	ENSGT00390000013481.c.b.b	ENSGT00940000155970.z.a #33	ENSGT00940000154537.lb.d #31	ENSGT00390000016042 #34	ENSGT00600000084626.f #26	ENSGT00940000160573.j #25	ENSGT00940000160735.a #15	ENSGT00940000158240.o.b	ENSGT00390000015226.d.j #16	ENSGT00940000161547.b #19	ENSGT01030000234549.a.b.h #22	ENSGT00570000079216 #24	ENSGT00940000164278.b #11	ENSGT00940000160175.b.a #10	ENSGT00390000011408.r.a #9	ENSGT01050000248004	ENSGT00940000164759.d	ENSGT00940000158584.f	ENSGT00940000155715.ob.b	ENSGT00940000160595.a.a.a	ENSGT00940000157500.f	ENSGT00940000158949.e	ENSGT00390000009948.c.f	ENSGT00940000155780.h	ENSGT00390000000747.n	ENSGT01100000263502.A.a.b.l
Coho salmon	MODERN SPECIES	2	TTC7A (ENSOKIG00005004215)	mcfd2 (ENSOKIG00005004332)	ENSOKIG00005004349	socs5b (ENSOKIG00005004398) #37	ENSOKIG00005004413	rhoq (ENSOKIG00005004429) #33	mxtx1 (ENSOKIG00005004453) #31	tmem254 (ENSOKIG00005004484) #34	ENSOKIG00005004508 #26	STK32C (ENSOKIG00005004630) #25	ENSOKIG00005005035	PWWP2B (ENSOKIG00005005038) #15	CSAD (ENSOKIG00005005205)	INPP5A (ENSOKIG00005006436) #16	nkx6.2 (ENSOKIG00005006572) #19	ENSOKIG00005006582 #22	ENSOKIG00005006605 #24	ENSOKIG00005006617 #24	ENSOKIG00005006632 #11	ADGRA1 (ENSOKIG00005006674) #10	ENSOKIG00005006864	KNDC1 (ENSOKIG00005006900) #9	ENSOKIG00005007052	dntt (ENSOKIG00005007086)	ENSOKIG00005007277	ENSOKIG00005007291	BTAF1 (ENSOKIG00005007700)	ENSOKIG00005014336	cpeb3 (ENSOKIG00005014347)	marchf5 (ENSOKIG00005014405)	ide (ENSOKIG00005014604)
Chinook salmon	MODERN SPECIES		COX7A2L (ENSOTSG00005027872)	KCNG3 (ENSOTSG00005027871)	OXER1 (ENSOTSG00005027870)	haao (ENSOTSG00005027868)	mcfd2 (ENSOTSG00005027862)	socs5b (ENSOTSG00005027859) #37	ENSOTSG00005027858	rhoq (ENSOTSG00005027857) #33	mxtx1 (ENSOTSG00005027855) #31	tmem254 (ENSOTSG00005027854) #34	ENSOTSG00005027852 #26	STK32C (ENSOTSG00005027805) #25	PWWP2B (ENSOTSG00005027801) #15	csad (ENSOTSG00005027788)	nkx6.2 (ENSOTSG00005026580) #19	valopa (ENSOTSG00005026579) #22	CFAP46 (ENSOTSG00005026545) #24	ENSOTSG00005026538 #11	ADGRA1 (ENSOTSG00005026239) #10	KNDC1 (ENSOTSG00005026238) #9	ENSOTSG00005026237	ENSOTSG00005026236	dntt (ENSOTSG00005026087)	ENSOTSG00005026077	ENSOTSG00005026075	BTAF1 (ENSOTSG00005013547)	cpeb3 (ENSOTSG00005013517)	marchf5 (ENSOTSG00005013483)	ide (ENSOTSG00005010418)	kmo (ENSOTSG00005010414)	opn3 (ENSOTSG00005010413)
Rainbow trout	MODERN SPECIES	15	ENSOMYG00000077054	socs5b (ENSOMYG00000012267) #37	ENSOMYG00000012258	ENSOMYG00000012239 #33	ENSOMYG00000074589 #31	ENSOMYG00000012225 #34	ENSOMYG00000012186 #26	ENSOMYG00000046908 #25	PWWP2B (ENSOMYG00000046890) #15	ENSOMYG00000063531	ENSOMYG00000071412	ENSOMYG00000046762	ENSOMYG00000046658	INPP5A (ENSOMYG00000046634) #16	nkx6.2 (ENSOMYG00000046587) #19	valopa (ENSOMYG00000046581) #22	ENSOMYG00000067629 #24	CFAP46 (ENSOMYG00000046576) #24	ENSOMYG00000046569 #11	ADGRA1 (ENSOMYG00000046554) #10	KNDC1 (ENSOMYG00000046549) #9	ENSOMYG00000046545	ENSOMYG00000046540	dntt (ENSOMYG00000046435)	ENSOMYG00000046395	ENSOMYG00000046390	BTAF1 (ENSOMYG00000046322)	cpeb3 (ENSOMYG00000046254)	marchf5 (ENSOMYG00000046225)	ide (ENSOMYG00000045287)	ENSOMYG00000055482
Huchen	MODERN SPECIES	131													csad (ENSHHUG00000016711)	INPP5A (ENSHHUG00000015968) #16	nkx6.2 (ENSHHUG00000015959) #19	valopa (ENSHHUG00000015921) #22	CFAP46 (ENSHHUG00000015877) #24	ENSHHUG00000015863 #24	ENSHHUG00000015858 #11	ENSHHUG00000015846	ADGRA1 (ENSHHUG00000015814) #10	KNDC1 (ENSHHUG00000015769) #9	ENSHHUG00000015757 #7	ENSHHUG00000015752
Northern pike	MODERN SPECIES	5	mmrn2a (ENSELUG00000018134)	bmpr1aa (ENSELUG00000000746)	ldb3a (ENSELUG00000018300)	opn4a (ENSELUG00000018351)	ENSELUG00000018363	rhoq (ENSELUG00000018425) #33	mxtx1 (ENSELUG00000018433) #31	tmem254 (ENSELUG00000018474) #34	ENSELUG00000000793 #26	STK32C (ENSELUG00000018549) #25	LRRC27 (ENSELUG00000018588) #14	PWWP2B (ENSELUG00000018627) #15	csad (ENSELUG00000018621)	INPP5A (ENSELUG00000018638) #16	nkx6.2 (ENSELUG00000018652) #19	valopa (ENSELUG00000000799) #22	ENSELUG00000033745	ENSELUG00000018688 #24	ENSELUG00000018790 #11	ENSELUG00000026913	ADGRA1 (ENSELUG00000018861) #10	KNDC1 (ENSELUG00000018893) #9	vox (ENSELUG00000018912) #8	ENSELUG00000018928 #7	ENSELUG00000018930	ENSELUG00000033875	dntt (ENSELUG00000018977)	blnk (ENSELUG00000019076)	ENSELUG00000019106	CCNJ (ENSELUG00000019131)	BTAF1 (ENSELUG00000019205)
Otomorpha	ANCESTRAL SPECIES	238								ENSGT00940000154537.lb #31	ENSGT00390000016042 #34	ENSGT00600000084626 #26	ENSGT00940000160573 #25	ENSGT00390000007203 #14	ENSGT00940000160735 #15	ENSGT00390000015226.d #16	ENSGT00940000161547 #19	ENSGT01030000234549.a.b #22	ENSGT00570000079216 #24	ENSGT00940000164278 #11	ENSGT00940000160175.b #10	ENSGT00390000011408 #9	ENSGT00940000165215.a #8	ENSGT00940000165215.b #7	ENSGT00940000164759	ENSGT00940000158584	ENSGT00940000177920	ENSGT00940000155715	ENSGT00940000160595.a.a	ENSGT00940000156981	ENSGT00940000157500	ENSGT00940000158949	ENSGT00390000009948.c
Clupeiformes	ANCESTRAL SPECIES	157														ENSGT00390000015226.d #16	ENSGT00940000161547 #19	ENSGT01030000234549.a.b #22	ENSGT00570000079216 #24	ENSGT00940000164278 #11	ENSGT00940000160175.b #10	ENSGT00390000011408 #9	ENSGT00940000165215.a #8	ENSGT00940000165215.b #7	ENSGT00940000164759	ENSGT00940000158584	ENSGT00940000177920	ENSGT00940000155715	ENSGT00940000160595.a.a	ENSGT00940000156981	ENSGT00940000157500	ENSGT00940000158949	ENSGT00390000009948.c
Atlantic herring	MODERN SPECIES	15	ENSCHAG00000027058	ENSCHAG00000027054	ENSCHAG00000027052	tmem184ba (ENSCHAG00000027045)	maff (ENSCHAG00000027042)	tomm22 (ENSCHAG00000027039)	dmc1 (ENSCHAG00000027038)	RNF40 (ENSCHAG00000027002)	ENSCHAG00000026985	ENSCHAG00000026984	znf668 (ENSCHAG00000026982)	ENSCHAG00000026981	ENSCHAG00000026979	cd37 (ENSCHAG00000026977)	ENSCHAG00000026975	valopb (ENSCHAG00000026974) #22	gabrz (ENSCHAG00000026971) #11	ENSCHAG00000026967 ##10	ENSCHAG00000026966	mxtx2 (ENSCHAG00000026963) ##31	bms1 (ENSCHAG00000026848)	SH2D4B (ENSCHAG00000026820)	ENSCHAG00000026816	gfra1b (ENSCHAG00000026811)	ATRNL1 (ENSCHAG00000026533)	trub1 (ENSCHAG00000026495)	ablim1b (ENSCHAG00000026310)	ENSCHAG00000026285	KBTBD13 (ENSCHAG00000026283)	KBTBD13 (ENSCHAG00000026278)	AFAP1L2 (ENSCHAG00000026268)
Denticle herring	DUPLICATION
Denticle herring	MODERN SPECIES	18	ENSDCDG00000017672	ENSDCDG00000017666	RNF40 (ENSDCDG00000017645)	dmc1 (ENSDCDG00000017615)	tomm22 (ENSDCDG00000017610)	maff (ENSDCDG00000017606)	tmem184ba (ENSDCDG00000017470)	ENSDCDG00000017455	HABP2 (ENSDCDG00000017302)	fam204a (ENSDCDG00000017298)	RAB11FIP2 (ENSDCDG00000017294)	emx2 (ENSDCDG00000017291)	INPP5A (ENSDCDG00000017218) #16	nkx6.2 (ENSDCDG00000017201) #19	nkx6.2 (ENSDCDG00000017196) #19	valopa (ENSDCDG00000017194) #22	ENSDCDG00000017191 #24	ENSDCDG00000017189 #24	ENSDCDG00000017186 #11	ADGRA1 (ENSDCDG00000017182) #10	KNDC1 (ENSDCDG00000017176) #9	vox (ENSDCDG00000017174) #8	ENSDCDG00000017171 #7	ENSDCDG00000017169	dntt (ENSDCDG00000017161)	ENSDCDG00000017148	gpatch11 (ENSDCDG00000017143)	HEATR5B (ENSDCDG00000007821)	STRN (ENSDCDG00000004699)	PLD5 (ENSDCDG00000004612)	cfap36 (ENSDCDG00000004605)
Denticle herring	MODERN SPECIES	18	emx2 (ENSDCDG00000017291)	RAB11FIP2 (ENSDCDG00000017294)	fam204a (ENSDCDG00000017298)	HABP2 (ENSDCDG00000017302)	ENSDCDG00000017455	tmem184ba (ENSDCDG00000017470)	maff (ENSDCDG00000017606)	tomm22 (ENSDCDG00000017610)	dmc1 (ENSDCDG00000017615)	RNF40 (ENSDCDG00000017645)	ENSDCDG00000017666	ENSDCDG00000017672	ENSDCDG00000017680	znf668 (ENSDCDG00000017687)	gall (ENSDCDG00000017693)	valopb (ENSDCDG00000017697) #22	gabrz (ENSDCDG00000017702) #11	ENSDCDG00000017708 ##10	ENSDCDG00000017713	mxtx2 (ENSDCDG00000017715) ##31	bms1 (ENSDCDG00000017724)	ENSDCDG00000017779	ENSDCDG00000017783	gfra1b (ENSDCDG00000017787)	ATRNL1 (ENSDCDG00000017855)	trub1 (ENSDCDG00000018865)	zgc:56095 (ENSDCDG00000018868)	syt5b (ENSDCDG00000018869)	cavin1b (ENSDCDG00000018871)	atp6v0a1b (ENSDCDG00000018892)	NAGLU (ENSDCDG00000019450)
Otophysi	ANCESTRAL SPECIES	221									ENSGT00390000016042 #34	ENSGT00600000084626 #26	ENSGT00940000160573 #25	ENSGT00390000007203 #14	ENSGT00940000160735 #15	ENSGT00390000015226.d #16	ENSGT00940000161547 #19	ENSGT01030000234549.a.b #22	ENSGT00570000079216 #24	ENSGT00940000164278 #11	ENSGT00940000160175.b #10	ENSGT00390000011408 #9	ENSGT00940000165215.a #8	ENSGT00940000165215.b #7	ENSGT00940000164759	ENSGT00940000158584	ENSGT00940000155715	ENSGT00940000175397	ENSGT00940000156981	ENSGT00940000157500	ENSGT00940000158949	ENSGT00390000009948.c	ENSGT00940000155780
Characiphysae	ANCESTRAL SPECIES	9	ENSGT00940000156106	ENSGT00940000158704	ENSGT00940000158072	ENSGT00940000159132.a	ENSGT00940000156502	ENSGT00940000164764.j.a	ENSGT00940000157908.g	ENSGT00400000022158.a.c	ENSGT00390000016042 #34	ENSGT00600000084626 #26	ENSGT00940000160573 #25	ENSGT00390000007203 #14	ENSGT00940000160735 #15	ENSGT00390000015226.d #16	ENSGT00940000161547 #19	ENSGT01030000234549.a.b #22	ENSGT00570000079216 #24	ENSGT00940000164278 #11	ENSGT00940000160175.b #10	ENSGT00390000011408 #9	ENSGT00940000165215.a #8	ENSGT00940000165215.b #7	ENSGT00940000164759	ENSGT00940000158584	ENSGT00940000155715	ENSGT00940000175397	ENSGT00940000156981	ENSGT00940000157500	ENSGT00940000158949	ENSGT00390000009948.c	ENSGT00940000155780
Characiphysae_b	ANCESTRAL SPECIES	29	ENSGT00940000156106	ENSGT00940000158704	ENSGT00940000158072	ENSGT00940000159132.a	ENSGT00940000156502	ENSGT00940000164764.j.a	ENSGT00940000157908.g	ENSGT00400000022158.a.c	ENSGT00390000016042 #34	ENSGT00600000084626 #26	ENSGT00940000160573 #25	ENSGT00390000007203 #14	ENSGT00940000160735 #15	ENSGT00390000015226.d #16	ENSGT00940000161547 #19	ENSGT01030000234549.a.b #22	ENSGT00570000079216 #24	ENSGT00940000164278 #11	ENSGT00940000160175.b #10	ENSGT00390000011408 #9	ENSGT00940000165215.a #8	ENSGT00940000165215.b #7	ENSGT00940000164759	ENSGT00940000158584	ENSGT00940000155715	ENSGT00940000175397	ENSGT00940000156981	ENSGT00940000157500	ENSGT00940000158949	ENSGT00390000009948.c	ENSGT00940000155780
Electric eel	DUPLICATION
Electric eel	MODERN SPECIES	377								srfb (ENSEEEG00000017352)	ENSEEEG00000017351	tmem254 (ENSEEEG00000017350) #34	ENSEEEG00000017349 #26	STK32C (ENSEEEG00000017348) #25	PWWP2B (ENSEEEG00000017346) #15	INPP5A (ENSEEEG00000017276) #16	nkx6.2 (ENSEEEG00000017267) #19	ENSEEEG00000016908 #22	ENSEEEG00000016882 #24	ENSEEEG00000016879	ENSEEEG00000016878	drap1 (ENSEEEG00000016877)	zgc:63470 (ENSEEEG00000016875)	rela (ENSEEEG00000016874)	ENSEEEG00000016873
Electric eel	MODERN SPECIES	369	mrpl10 (ENSEEEG00000006332)	pnpo (ENSEEEG00000006316)	prr15lb (ENSEEEG00000006315)	cdk5rap3 (ENSEEEG00000006028)	NFE2L1 (ENSEEEG00000006006)	cbx1b (ENSEEEG00000006003)	phkg2 (ENSEEEG00000005928)	ccdc189 (ENSEEEG00000005919)	RNF40 (ENSEEEG00000005910)	ENSEEEG00000005904	ENSEEEG00000005903	znf668 (ENSEEEG00000005902)	ENSEEEG00000005901	cd37 (ENSEEEG00000005899)	gall (ENSEEEG00000005897)	valopb (ENSEEEG00000005578) #22	gabrz (ENSEEEG00000005560) #11	ENSEEEG00000005557	mxtx2 (ENSEEEG00000005556) ##31	bms1 (ENSEEEG00000005542)	SH2D4B (ENSEEEG00000005534)
Characoidei	ANCESTRAL SPECIES	19	ENSGT00940000156106	ENSGT00940000158704	ENSGT00940000158072	ENSGT00940000159132.a	ENSGT00940000156502	ENSGT00940000164764.j.a	ENSGT00940000157908.g	ENSGT00400000022158.a.c	ENSGT00390000016042 #34	ENSGT00600000084626 #26	ENSGT00940000160573 #25	ENSGT00390000007203 #14	ENSGT00940000160735 #15	ENSGT00390000015226.d #16	ENSGT00940000161547 #19	ENSGT01030000234549.a.b #22	ENSGT00570000079216 #24	ENSGT00940000164278 #11	ENSGT00940000160175.b #10	ENSGT00390000011408 #9	ENSGT00940000165215.a #8	ENSGT00940000165215.b #7	ENSGT00940000164759	ENSGT00940000158584	ENSGT00940000155715	ENSGT00940000175397	ENSGT00940000156981	ENSGT00940000157500	ENSGT00940000158949	ENSGT00390000009948.c	ENSGT00940000155780
Mexicana tetra	DUPLICATION
Mexicana tetra	MODERN SPECIES	1315															ENSAMXG00000041014	valopa (ENSAMXG00000037317) #22	ENSAMXG00000038614	ENSAMXG00000029056 #24
Mexicana tetra	MODERN SPECIES	19	prr15lb (ENSAMXG00000025204)	cdk5rap3 (ENSAMXG00000010548)	ENSAMXG00000041328	NFE2L1 (ENSAMXG00000030120)	ENSAMXG00000041124	cbx1b (ENSAMXG00000036601)	phkg2 (ENSAMXG00000040543)	RNF40 (ENSAMXG00000010694)	ENSAMXG00000035525	znf668 (ENSAMXG00000025205)	ENSAMXG00000029663	ENSAMXG00000025206	ENSAMXG00000037059	cd37 (ENSAMXG00000010877)	gall (ENSAMXG00000041060)	valopb (ENSAMXG00000010897) #22	gabrz (ENSAMXG00000041040) #11	ENSAMXG00000033781 ##10	ENSAMXG00000043059	mxtx2 (ENSAMXG00000039693) ##31	bms1 (ENSAMXG00000011236)	SH2D4B (ENSAMXG00000011484)	ENSAMXG00000030364	ENSAMXG00000041835	gfra1b (ENSAMXG00000000090)	ATRNL1 (ENSAMXG00000011688)	cyth1b (ENSAMXG00000032126)	timp2a (ENSAMXG00000032674)	sfxn2 (ENSAMXG00000012045)	arl3b (ENSAMXG00000037720)	trim8b (ENSAMXG00000012070)
Red-bellied piranha	DUPLICATION
Red-bellied piranha	MODERN SPECIES	45	sav1 (ENSPNAG00000002640)	atl1 (ENSPNAG00000002623)	map4k5 (ENSPNAG00000013153)	cdkl1 (ENSPNAG00000002502)	dmac2l (ENSPNAG00000012970)	klc4 (ENSPNAG00000002482)	PTK7 (ENSPNAG00000012880)	srfb (ENSPNAG00000002394)	tmem254 (ENSPNAG00000012736) #34	ENSPNAG00000002368 #26	STK32C (ENSPNAG00000012642) #25	ENSPNAG00000012617	PWWP2B (ENSPNAG00000012612) #15	INPP5A (ENSPNAG00000002313) #16	nkx6.2 (ENSPNAG00000012538) #19	valopa (ENSPNAG00000002282) #22	CFAP46 (ENSPNAG00000012504) #24	ENSPNAG00000005548 #11	ENSPNAG00000012411 #10	KNDC1 (ENSPNAG00000002210) #9	vox (ENSPNAG00000002188) #8	ENSPNAG00000012311 #7	ENSPNAG00000012296	dntt (ENSPNAG00000012283)	blnk (ENSPNAG00000012255)	ENSPNAG00000002160	CCNJ (ENSPNAG00000002156)	BTAF1 (ENSPNAG00000012196)	cpeb3 (ENSPNAG00000012111)	marchf5 (ENSPNAG00000012019)	ide (ENSPNAG00000011967)
Red-bellied piranha	MODERN SPECIES	42	prr15lb (ENSPNAG00000008267)	cdk5rap3 (ENSPNAG00000008263)	ENSPNAG00000008256	NFE2L1 (ENSPNAG00000008250)	cbx1b (ENSPNAG00000000806)	phkg2 (ENSPNAG00000008236)	ccdc189 (ENSPNAG00000000790)	RNF40 (ENSPNAG00000008210)	ENSPNAG00000000750	znf668 (ENSPNAG00000008178)	ENSPNAG00000000742	ENSPNAG00000000738	ENSPNAG00000000733	cd37 (ENSPNAG00000008159)	gall (ENSPNAG00000008151)	valopb (ENSPNAG00000008142) #22	gabrz (ENSPNAG00000000698) #11	ENSPNAG00000008123 ##10	ENSPNAG00000008118	mxtx2 (ENSPNAG00000000685) ##31	bms1 (ENSPNAG00000000676)	SH2D4B (ENSPNAG00000008093)	ENSPNAG00000029573	gfra1b (ENSPNAG00000029491)	ATRNL1 (ENSPNAG00000029486)	trub1 (ENSPNAG00000006881)	ablim1b (ENSPNAG00000004570)	AFAP1L2 (ENSPNAG00000029300)	KBTBD13 (ENSPNAG00000004553)	tdrd1 (ENSPNAG00000005831)	ENSPNAG00000004506
Channel catfish	DUPLICATION
Channel catfish	MODERN SPECIES	22	sav1 (ENSIPUG00000019636)	ATL1 (ENSIPUG00000019583)	map4k5 (ENSIPUG00000019520)	cdkl1 (ENSIPUG00000019505)	ATP5S (ENSIPUG00000019488)	ENSIPUG00000019464	PTK7 (ENSIPUG00000019376)	srf (ENSIPUG00000019339)	Tmem254 (ENSIPUG00000019312) #34	srr (ENSIPUG00000019247) #26	STK32C (ENSIPUG00000019224) #25	ENSIPUG00000019201	PWWP2B (ENSIPUG00000019195) #15	inpp5a (ENSIPUG00000019113) #16	nkx6-2 (ENSIPUG00000019098) #19	valopa (ENSIPUG00000019050) #22	ENSIPUG00000019037 #24	ENSIPUG00000019015 #24	ENSIPUG00000018998 #11	adgra1 (ENSIPUG00000018953) #10	kndc1 (ENSIPUG00000018902) #9	ventx (ENSIPUG00000018889) #8	HS3ST1 (ENSIPUG00000018884)	dntt (ENSIPUG00000018851)	ENSIPUG00000018799	znf518a (ENSIPUG00000018787)	ccnj (ENSIPUG00000018774)	BTAF1 (ENSIPUG00000018620)	cpeb3 (ENSIPUG00000018571)	march5 (ENSIPUG00000018537)	ide (ENSIPUG00000018484)
Channel catfish	MODERN SPECIES	4	prr15lb (ENSIPUG00000018303)	cdk5rap3 (ENSIPUG00000018270)	ENSIPUG00000018255	NFE2L1 (ENSIPUG00000018201)	cbx1 (ENSIPUG00000018189)	ccdc189 (ENSIPUG00000018176)	PHKG2 (ENSIPUG00000018153)	RNF40 (ENSIPUG00000018115)	ENSIPUG00000018102	znf668 (ENSIPUG00000018095)	ENSIPUG00000018093	ENSIPUG00000018087	ENSIPUG00000018080	CD82 (ENSIPUG00000018027)	gal (ENSIPUG00000018006)	valopb (ENSIPUG00000017998) #22	gabrz (ENSIPUG00000017975) #11	ENSIPUG00000017968 ##10	ENSIPUG00000017958	mxtx2 (ENSIPUG00000017954) ##31	bms1 (ENSIPUG00000017855)	SH2D4B (ENSIPUG00000017819)	ENSIPUG00000017804	gfra1 (ENSIPUG00000017781)	Atrnl1 (ENSIPUG00000017611)	trub1 (ENSIPUG00000017559)	ablim1b (ENSIPUG00000017391)	KBTBD13 (ENSIPUG00000017373)	afap1l2 (ENSIPUG00000017345)	vwa2 (ENSIPUG00000017309)	tdrd1 (ENSIPUG00000017232)
Cyprinoidei	ANCESTRAL SPECIES	185					ENSGT00940000164764.i.b	ENSGT00940000157908.g	ENSGT00400000022158.a	ENSGT00940000164764.j.a	ENSGT00940000153244.A	ENSGT00390000016042 #34	ENSGT00600000084626 #26	ENSGT00940000160573 #25	ENSGT00940000160735 #15	ENSGT00390000015226.d #16	ENSGT00940000161547 #19	ENSGT01030000234549.a.b #22	ENSGT00570000079216 #24	ENSGT00940000164278 #11	ENSGT00940000160175.b #10
Cyprininae	DUPLICATION
Cyprininae	DUPLICATION
Cyprininae	ANCESTRAL SPECIES	796										ENSGT00390000016042.v.a.a #34	ENSGT00940000160573.k.a #25	ENSGT00940000160735.c #15	ENSGT00390000015226.d #16	ENSGT00940000161547.g.a #19	ENSGT00940000161547.h #19	ENSGT01030000234549.a.b.s.a #22	ENSGT00940000164278.c.a #11	ENSGT00940000160175.b.c #10
Cyprininae_a	DUPLICATION
Cyprininae_a	ANCESTRAL SPECIES	663												ENSGT00940000160573.k.a #25	ENSGT00940000160735.c #15	ENSGT00390000015226.d.d #16	ENSGT00940000161547.g.a #19	ENSGT01030000234549.a.b.s.a.a #22	ENSGT00940000164278.c.a #11	ENSGT00940000160175.b.c #10
Common carp reference	MODERN SPECIES	18	slc30a10 (ENSCCRG00000059043)	lclat1 (ENSCCRG00000064289)	ENSCCRG00000020282	ENSCCRG00000069150	ENSCCRG00000053813	ENSCCRG00000081402	PTK7 (ENSCCRG00000019402)	ENSCCRG00000010238	ENSCCRG00000032973 #26	ENSCCRG00000062767 #34	STK32C (ENSCCRG00000012039) #25	PWWP2B (ENSCCRG00000068911) #15	INPP5A (ENSCCRG00000061360) #16	nkx6.2 (ENSCCRG00000073800) #19	ENSCCRG00000057951	valopa (ENSCCRG00000049544) #22	ENSCCRG00000078714 #11	ENSCCRG00000063083	ENSCCRG00000081671 #10	KNDC1 (ENSCCRG00000053314) #9	vox (ENSCCRG00000005196) #8	ENSCCRG00000005203 #7	ENSCCRG00000063277	ENSCCRG00000071898	dntt (ENSCCRG00000069298)	blnk (ENSCCRG00000042136)	ENSCCRG00000056399	ENSCCRG00000023179	ENSCCRG00000074425	cox5b2 (ENSCCRG00000080759)	ENSCCRG00000044698
Golden-line barbel	MODERN SPECIES	1516																valopa (ENSSGRG00000019395) #22	ENSSGRG00000019393 #11	ENSSGRG00000019392 #10
Cyprininae_a	ANCESTRAL SPECIES	1057															ENSGT00940000161547.h #19	ENSGT01030000234549.a.b.s.a.b #22
Golden-line barbel	MODERN SPECIES	1472													ENSSGRG00000007325	INPP5A (ENSSGRG00000007320) #16	nkx6.2 (ENSSGRG00000007318) #19	valopa (ENSSGRG00000007317) #22
Cyprininae	ANCESTRAL SPECIES	406	ENSGT00940000157952	ENSGT00940000154800.e	ENSGT00940000179241	ENSGT00940000159967	ENSGT00950000182836.a	ENSGT00390000009189.o	ENSGT00950000183209.b.a.a.h.a.a	ENSGT00940000164764.j.a.b	ENSGT00940000157908.g.i	ENSGT00400000022158.a.e	ENSGT00390000016042.u #34	ENSGT00600000084626 #26	ENSGT00940000160573.k.b #25	ENSGT00940000160735.d #15	ENSGT00940000161547.g.b #19	ENSGT01030000234549.a.b.s.b #22	ENSGT00570000079216 #24	ENSGT00940000164278.c.b #11	ENSGT00940000160175.b.d #10	ENSGT00390000011408 #9	ENSGT00940000165215.a.a #8	ENSGT00940000164759.f	ENSGT00940000158584.a	ENSGT00940000155715.ub.a	ENSGT00940000156981.t	ENSGT00940000158924.d
Cyprininae_a	ANCESTRAL SPECIES	215	ENSGT00390000009189.o	ENSGT00950000183209.b.a.a.h.a.a	ENSGT00940000164764.j.a.b	ENSGT00950000183209.b.a.a.g	ENSGT00940000164764.i.b	ENSGT00940000164764.j.a.a	ENSGT00940000157908.g.i	ENSGT00400000022158.a.e	ENSGT00390000016042.v.a.a #34	ENSGT00390000016042.u #34	ENSGT00600000084626 #26	ENSGT00940000160573.k.b #25	ENSGT00940000160735.d #15	ENSGT00390000015226.d.c #16	ENSGT00940000161547.g.b #19	ENSGT01030000234549.a.b.s.b #22	ENSGT00570000079216 #24	ENSGT00940000164278.c.b #11	ENSGT00940000160175.b.d #10	ENSGT00390000011408 #9	ENSGT00940000165215.a.a #8	ENSGT00940000165215.b.f #7	ENSGT00940000165215.a.b #8	ENSGT00940000165215.b.e #7	ENSGT00940000164759.e	ENSGT00940000158584.b	ENSGT00940000155715.ub.b	ENSGT00940000175397.b	ENSGT00940000156981.s	ENSGT00940000158924.c.a	ENSGT00940000158924.c.b
Common carp reference	MODERN SPECIES	48	ENSCCRG00000012461	ENSCCRG00000070640	lclat1 (ENSCCRG00000075534)	lbh (ENSCCRG00000005924)	ENSCCRG00000059348	mrpl2 (ENSCCRG00000074213)	ENSCCRG00000020240	PTK7 (ENSCCRG00000011709)	SRF (ENSCCRG00000065991)	ENSCCRG00000075336 #34	ENSCCRG00000012050 #26	STK32C (ENSCCRG00000012047) #25	PWWP2B (ENSCCRG00000006416) #15	INPP5A (ENSCCRG00000069836) #16	nkx6.2 (ENSCCRG00000065672) #19	valopa (ENSCCRG00000081246) #22	ENSCCRG00000048650 #24	ENSCCRG00000069141 #24	ENSCCRG00000064097	ENSCCRG00000071476	ENSCCRG00000074668	ENSCCRG00000055420	ENSCCRG00000057732	ENSCCRG00000059185	ENSCCRG00000034371	ENSCCRG00000067262	ENSCCRG00000007076	ENSCCRG00000058697	ENSCCRG00000064010	ENSCCRG00000022439 #11	ENSCCRG00000068907 #10
Golden-line barbel	MODERN SPECIES	1281																ENSSGRG00000050889 #22	ENSSGRG00000050890 #24	ENSSGRG00000050896
Goldfish	DUPLICATION
Goldfish	DUPLICATION
Goldfish	MODERN SPECIES	2458																valopa (ENSCARG00000063610) #22	ENSCARG00000063702 #24
Goldfish	MODERN SPECIES	31	tmem254 (ENSCARG00000007283) #34	ENSCARG00000007269	ENSCARG00000007259	ENSCARG00000007027	mrpl2 (ENSCARG00000006977)	lbh (ENSCARG00000006964)	slc30a10 (ENSCARG00000006952)	ENSCARG00000006943	ypel5 (ENSCARG00000006936)	ENSCARG00000006932	KLHDC3 (ENSCARG00000006903)	ENSCARG00000006884	PWWP2B (ENSCARG00000006877) #15	INPP5A (ENSCARG00000006768) #16	nkx6.2 (ENSCARG00000006751) #19	valopa (ENSCARG00000006669) #22	ENSCARG00000006649 #24	ENSCARG00000006634	PTK7 (ENSCARG00000006365)	srfb (ENSCARG00000006337)	ARID4B (ENSCARG00000006220)	tomm20a (ENSCARG00000006156)	irf2bp2a (ENSCARG00000006135)	ENSCARG00000006128	EGLN1 (ENSCARG00000006105)	tsnax (ENSCARG00000006059)	disc1 (ENSCARG00000024106)	SIPA1L2 (ENSCARG00000024068)	ntpcr (ENSCARG00000024049)
Goldfish	MODERN SPECIES	4	NID1 (ENSCARG00000017244)	gpr137ba (ENSCARG00000017124)	pkz (ENSCARG00000017111)	eif2ak2 (ENSCARG00000017094)	gpatch11 (ENSCARG00000017085)	MYPN (ENSCARG00000016666)	cox5b2 (ENSCARG00000016630)	dnajc12 (ENSCARG00000016615)	ENSCARG00000016602	ENSCARG00000016596	blnk (ENSCARG00000016568)	dntt (ENSCARG00000016533)	INPP5A (ENSCARG00000016164) #16	nkx6.2 (ENSCARG00000016123) #19	tmem254 (ENSCARG00000016115) #34	valopa (ENSCARG00000016078) #22	ENSCARG00000016049 #11	ENSCARG00000016039	ENSCARG00000015861 #10	ENSCARG00000015813 #9	vox (ENSCARG00000015807) #8	ENSCARG00000015802	dntt (ENSCARG00000015747)	npas4l (ENSCARG00000015735)	ypel5 (ENSCARG00000015733)	slc30a10 (ENSCARG00000015729)	lclat1 (ENSCARG00000015723)	lbh (ENSCARG00000015712)	ENSCARG00000015635	ENSCARG00000015617	PTK7 (ENSCARG00000014262)
Cyprininae	DUPLICATION
Cyprininae	ANCESTRAL SPECIES	172	ENSGT00940000166447.a	ENSGT00940000157439.b.b	ENSGT00390000000603	ENSGT00390000011219.e.a	ENSGT00940000154534.b.b.e	ENSGT00390000011219.f	ENSGT00750000118756.a	ENSGT00950000182892.a.b.a.b.a.e	ENSGT00940000154152.b.b.a	ENSGT00940000160435.d	ENSGT00940000154323.a	ENSGT00390000002866.a.a	ENSGT00940000164729.a.b.g	ENSGT00940000165156.e	ENSGT00990000204711.a	ENSGT01030000234549.a.b.t.a #22	ENSGT00940000164278.d.a #11	ENSGT00940000160175.a.b ##10	ENSGT00940000160595.a.b.a	ENSGT00940000154537.kb.b ##31	ENSGT00940000153195.B.m	ENSGT00940000159732.a.b	ENSGT00940000156754.a.b.b.d.a	ENSGT00940000155560.k.a	ENSGT00940000155790.c.b	ENSGT00940000158962.a.b	ENSGT00950000182850.a.a.a	ENSGT00940000161629.b.a	ENSGT00950000183067.a.b.b.kc.b	ENSGT00940000159040.e	ENSGT00940000158754.g
Goldfish	MODERN SPECIES	2288	cdk5r1b (ENSCARG00000066257)	ENSCARG00000060553	PDK2 (ENSCARG00000058980)	TBKBP1 (ENSCARG00000058853)	tbx21 (ENSCARG00000058837)	osbpl7 (ENSCARG00000058721)	ENSCARG00000058662	prr15lb (ENSCARG00000058654)	NFE2L1 (ENSCARG00000058638)	cbx1b (ENSCARG00000058530)	phkg2 (ENSCARG00000058370)	RNF40 (ENSCARG00000058123)	ENSCARG00000058046	znf668 (ENSCARG00000058027)	gall (ENSCARG00000058003)	valopb (ENSCARG00000057974) #22	gabrz (ENSCARG00000057947) #11	ENSCARG00000057938 ##10	ENSCARG00000057929	mxtx2 (ENSCARG00000057917) ##31	bms1 (ENSCARG00000057803)	SH2D4B (ENSCARG00000057772)	ENSCARG00000057743	gfra1b (ENSCARG00000057705)	ATRNL1 (ENSCARG00000056439)	trub1 (ENSCARG00000056273)	ablim1b (ENSCARG00000050770)	KBTBD13 (ENSCARG00000050616)	AFAP1L2 (ENSCARG00000050600)	ENSCARG00000050579	tdrd1 (ENSCARG00000050447)
Cyprininae_a	ANCESTRAL SPECIES	8	ENSGT00940000166447.a	ENSGT00940000157439.b.b	ENSGT00390000000603	ENSGT00390000011219.e.a	ENSGT00940000154534.b.b.e	ENSGT00390000011219.f	ENSGT00750000118756.a	ENSGT00950000182892.a.b.a.b.a.e	ENSGT00940000154152.b.b.a	ENSGT00940000160435.d	ENSGT00940000154323.a	ENSGT00390000002866.a.a	ENSGT00940000164729.a.b.g	ENSGT00940000165156.e	ENSGT00990000204711.a	ENSGT01030000234549.a.b.t.a #22	ENSGT00940000164278.d.a #11	ENSGT00940000160175.a.b ##10	ENSGT00940000160595.a.b.a	ENSGT00940000154537.kb.b ##31	ENSGT00940000153195.B.m	ENSGT00940000159732.a.b	ENSGT00940000156754.a.b.b.d.a	ENSGT00940000155560.k.a	ENSGT00940000155790.c.b	ENSGT00940000158962.a.b	ENSGT00950000182850.a.a.a.b	ENSGT00940000161629.b.a	ENSGT00950000183067.a.b.b.kc.b	ENSGT00940000159040.e	ENSGT00940000158754.g
Common carp reference	MODERN SPECIES	44	TBKBP1 (ENSCCRG00000082246)	tbx21 (ENSCCRG00000054449)	osbpl7 (ENSCCRG00000027561)	prr15lb (ENSCCRG00000055334)	pnpo (ENSCCRG00000073591)	ENSCCRG00000062559	ENSCCRG00000027591	phkg2 (ENSCCRG00000031070)	cbx1b (ENSCCRG00000027598)	ENSCCRG00000030924	ENSCCRG00000038032	znf668 (ENSCCRG00000038033)	ENSCCRG00000074365	ENSCCRG00000078530	gall (ENSCCRG00000038042)	valopb (ENSCCRG00000018658) #22	gabrz (ENSCCRG00000074636) #11	ENSCCRG00000074089	ENSCCRG00000053401 ##10	ENSCCRG00000059155	ENSCCRG00000082440	mxtx2 (ENSCCRG00000027959) ##31	bms1 (ENSCCRG00000027827)	ENSCCRG00000052053	ENSCCRG00000049080	gfra1b (ENSCCRG00000074130)	ATRNL1 (ENSCCRG00000022800)	trub1 (ENSCCRG00000024946)	ablim1b (ENSCCRG00000010246)	ENSCCRG00000079495	AFAP1L2 (ENSCCRG00000001549)
Golden-line barbel	MODERN SPECIES	887	tbx21 (ENSSGRG00000046036)	osbpl7 (ENSSGRG00000046037)	mrpl10 (ENSSGRG00000046038)	pnpo (ENSSGRG00000046039)	prr15lb (ENSSGRG00000046068)	ENSSGRG00000046070	NFE2L1 (ENSSGRG00000046100)	phkg2 (ENSSGRG00000046074)	cbx1b (ENSSGRG00000046102)	ccdc189 (ENSSGRG00000046110)	RNF40 (ENSSGRG00000046152)	ENSSGRG00000047114	znf668 (ENSSGRG00000047115)	ENSSGRG00000047119	cd37 (ENSSGRG00000047122)	valopb (ENSSGRG00000047125) #22	gabrz (ENSSGRG00000047127) #11	ENSSGRG00000047128 ##10	ENSSGRG00000047129	mxtx2 (ENSSGRG00000047130) ##31	bms1 (ENSSGRG00000047142)	SH2D4B (ENSSGRG00000047324)	ENSSGRG00000047325
Cyprininae	ANCESTRAL SPECIES	64	ENSGT00940000153704.B.c.a	ENSGT00940000166447.b	ENSGT00940000157439.b.a	ENSGT00390000011219.e.b	ENSGT00940000154534.b.b.f	ENSGT00390000000713	ENSGT00950000182892.a.b.a.b.a.f	ENSGT00940000154152.b.b.b	ENSGT00940000160435.c	ENSGT00390000002866.a.b	ENSGT00940000164729.a.b.h	ENSGT00940000165156.f	ENSGT00600000085580	ENSGT00940000161485	ENSGT00990000204711.b	ENSGT01030000234549.a.b.t.b #22	ENSGT00940000164278.d.b #11	ENSGT00940000160175.a.a ##10	ENSGT00940000160595.a.b.b	ENSGT00940000154537.kb.a ##31	ENSGT00940000153195.B.n	ENSGT00940000159732.a.a	ENSGT00940000156754.a.b.b.d.b
Goldfish	MODERN SPECIES	3	osbpl7 (ENSCARG00000002627)	mrpl10 (ENSCARG00000002611)	pnpo (ENSCARG00000002600)	prr15lb (ENSCARG00000002595)	cdk5rap3 (ENSCARG00000002583)	NFE2L1 (ENSCARG00000002569)	cbx1b (ENSCARG00000002543)	ENSCARG00000002537	phkg2 (ENSCARG00000002488)	RNF40 (ENSCARG00000002345)	ENSCARG00000002279	znf668 (ENSCARG00000002275)	ENSCARG00000002268	cd37 (ENSCARG00000002261)	gall (ENSCARG00000002254)	valopb (ENSCARG00000002242) #22	gabrz (ENSCARG00000002231) #11	ENSCARG00000002222	SH2D4B (ENSCARG00000002161)	bms1 (ENSCARG00000001993)	mxtx2 (ENSCARG00000001942) ##31	ENSCARG00000001930	ENSCARG00000017966 ##10	CDC42EP4 (ENSCARG00000017961)	ENSCARG00000017954	zgc:86738 (ENSCARG00000017947)	ENSCARG00000017902	ENSCARG00000017884	ENSCARG00000017813	LZTS2 (ENSCARG00000017785)	ENSCARG00000017425
Cyprininae_a	ANCESTRAL SPECIES	18	ENSGT00940000153704.B.c.a	ENSGT00940000166447.b	ENSGT00940000157439.b.a	ENSGT00390000011219.e.b	ENSGT00940000154534.b.b.f	ENSGT00390000000713	ENSGT00950000182892.a.b.a.b.a.f	ENSGT00940000154152.b.b.b	ENSGT00940000160435.c	ENSGT00390000002866.a.b	ENSGT00940000164729.a.b.h	ENSGT00940000165156.f	ENSGT00600000085580	ENSGT00940000161485	ENSGT00990000204711.b	ENSGT01030000234549.a.b.t.b #22	ENSGT00940000164278.d.b #11	ENSGT00940000160175.a.a ##10	ENSGT00940000160595.a.b.b	ENSGT00940000154537.kb.a ##31	ENSGT00940000153195.B.n	ENSGT00940000159732.a.a	ENSGT00940000156754.a.b.b.d.b	ENSGT00940000156754.a.b.b.c	ENSGT00940000155560.k.b.b	ENSGT00940000155790.c.a	ENSGT00940000158962.a.a	ENSGT00950000182850.a.a.a.a	ENSGT00950000183067.a.b.b.kc.a	ENSGT00940000161629.b.b	ENSGT00940000159040.f
Common carp reference	MODERN SPECIES	25	tbx21 (ENSCCRG00000027877)	osbpl7 (ENSCCRG00000027864)	cdk5rap3 (ENSCCRG00000027849)	prr15lb (ENSCCRG00000058633)	NFE2L1 (ENSCCRG00000027844)	phkg2 (ENSCCRG00000070942)	cbx1b (ENSCCRG00000030872)	ccdc189 (ENSCCRG00000030884)	RNF40 (ENSCCRG00000030970)	znf668 (ENSCCRG00000031067)	ENSCCRG00000058890	ENSCCRG00000078537	cd37 (ENSCCRG00000018649)	gall (ENSCCRG00000071394)	ENSCCRG00000055797	valopb (ENSCCRG00000078822) #22	gabrz (ENSCCRG00000059296) #11	ENSCCRG00000063866	ENSCCRG00000056081 ##10	ENSCCRG00000064490	mxtx2 (ENSCCRG00000028927) ##31	bms1 (ENSCCRG00000027770)	ENSCCRG00000059380	ENSCCRG00000061107	ENSCCRG00000056299	gfra1b (ENSCCRG00000038946)	ATRNL1 (ENSCCRG00000041237)	trub1 (ENSCCRG00000009819)	ablim1b (ENSCCRG00000001806)	AFAP1L2 (ENSCCRG00000002149)	ENSCCRG00000002153
Golden-line barbel	MODERN SPECIES	25	ENSSGRG00000016909	PDK2 (ENSSGRG00000016914)	ENSSGRG00000017466	tbx21 (ENSSGRG00000017468)	osbpl7 (ENSSGRG00000017476)	pnpo (ENSSGRG00000017907)	prr15lb (ENSSGRG00000017916)	nfe2l1b (ENSSGRG00000017919)	cbx1b (ENSSGRG00000017920)	phkg2 (ENSSGRG00000017924)	RNF40 (ENSSGRG00000017954)	ENSSGRG00000018862	znf668 (ENSSGRG00000018864)	cd37 (ENSSGRG00000018868)	gall (ENSSGRG00000018870)	valopb (ENSSGRG00000018871) #22	gabrz (ENSSGRG00000018872) #11	ENSSGRG00000018874 ##10	ENSSGRG00000018875	mxtx2 (ENSSGRG00000018876) ##31	bms1 (ENSSGRG00000018878)	SH2D4B (ENSSGRG00000019014)	ENSSGRG00000019016	ENSSGRG00000019017	gfra1b (ENSSGRG00000019022)	ATRNL1 (ENSSGRG00000019036)	trub1 (ENSSGRG00000019254)	ablim1b (ENSSGRG00000019267)	AFAP1L2 (ENSSGRG00000019728)	KBTBD13 (ENSSGRG00000019731)	VWA2 (ENSSGRG00000019732)
Zebrafish	DUPLICATION
Zebrafish	MODERN SPECIES	4		tmem254 (ENSDARG00000109902) #34	ENSDARG00000109481	ENSDARG00000100613 #26	npas4l (ENSDARG00000116511)	KLHDC3 (ENSDARG00000102772)	slc30a10 (ENSDARG00000103983)	lclat1 (ENSDARG00000103320)	ENSDARG00000111743	srfb (ENSDARG00000102867)	mrpl2 (ENSDARG00000062568)	ENSDARG00000108326	lbh (ENSDARG00000111701)	PWWP2B (ENSDARG00000101080) #15	nkx6.2 (ENSDARG00000104735) #19	valopa (ENSDARG00000021150) #22	ENSDARG00000059891 #11	ENSDARG00000101663	dntt (ENSDARG00000104792)	ENSDARG00000116483 #9	vox (ENSDARG00000099761) #8	vent (ENSDARG00000100483)	ENSDARG00000109912	blnk (ENSDARG00000042722)	CCNJ (ENSDARG00000059917)	HERC4 (ENSDARG00000059936)	cox5b2 (ENSDARG00000068738)	dnajc12 (ENSDARG00000086691)	SIRT1 (ENSDARG00000068064)	CACUL1 (ENSDARG00000021885)	ENSDARG00000109262
Zebrafish	MODERN SPECIES	3	pnpo (ENSDARG00000017612)	prr15lb (ENSDARG00000029308)	cdk5rap3 (ENSDARG00000045092)	ENSDARG00000096711	nfe2l1b (ENSDARG00000076533)	cbx1b (ENSDARG00000054442)	phkg2 (ENSDARG00000054208)	ccdc189 (ENSDARG00000096777)	RNF40 (ENSDARG00000054201)	ENSDARG00000061424	znf668 (ENSDARG00000025226)	ENSDARG00000086255	ENSDARG00000096721	cd37 (ENSDARG00000075515)	gall (ENSDARG00000096760)	valopb (ENSDARG00000054181) #22	gabrz (ENSDARG00000094512) #11	ENSDARG00000054177 ##10	ENSDARG00000074270	mxtx2 (ENSDARG00000015906) ##31	bms1 (ENSDARG00000054154)	SH2D4B (ENSDARG00000015144)	ENSDARG00000089766	gfra1b (ENSDARG00000102564)	ATRNL1 (ENSDARG00000006420)	trub1 (ENSDARG00000053805)	ablim1b (ENSDARG00000045064)	ENSDARG00000116484	AFAP1L2 (ENSDARG00000074806)	VWA2 (ENSDARG00000075441)	tdrd1 (ENSDARG00000007465)
Osteoglossiformes	ANCESTRAL SPECIES	18					ENSGT00940000157425.B	ENSGT00940000158482	ENSGT00390000008978	ENSGT00390000008787.b	ENSGT00940000159235.a	ENSGT00940000154537.lb #31	ENSGT00600000084626 #26	ENSGT00940000160573.c #25	ENSGT00940000160735 #15	ENSGT00390000015226.d #16	ENSGT00940000161547 #19	ENSGT01030000234549.a.b #22	ENSGT00570000079216 #24	ENSGT00940000164278 #11	ENSGT00940000160175.b #10	ENSGT00390000011408 #9	ENSGT00940000165215.a #8	ENSGT00940000165215.b #7	ENSGT00940000164759	ENSGT00940000158584	ENSGT00940000155715	ENSGT00940000162006	ENSGT00940000156981	ENSGT00940000157500	ENSGT00940000158949	ENSGT00390000009948.c	ENSGT00940000155780
P. kingsleyae	DUPLICATION
P. kingsleyae	MODERN SPECIES	11	tysnd1 (ENSPKIG00000018909)	hif1an (ENSPKIG00000018875)	rgra (ENSPKIG00000018846)	cuedc2 (ENSPKIG00000018810)	emx2 (ENSPKIG00000018768)	RAB11FIP2 (ENSPKIG00000018743)	ENSPKIG00000018724	fam204a (ENSPKIG00000018710)	ENSPKIG00000018680	tspan14 (ENSPKIG00000018636)	ENSPKIG00000018601 #31	STK32C (ENSPKIG00000018578) #25	PWWP2B (ENSPKIG00000018566) #15	INPP5A (ENSPKIG00000018494) #16	nkx6.2 (ENSPKIG00000018453) #19	valopa (ENSPKIG00000018441) #22	ENSPKIG00000018424 #24	ENSPKIG00000018388 #24	ENSPKIG00000018358 #11	ENSPKIG00000018341	ADGRA1 (ENSPKIG00000018232) #10	KNDC1 (ENSPKIG00000018104) #9	ENSPKIG00000018064
P. kingsleyae	MODERN SPECIES	18									ENSPKIG00000008070	SH2D4B (ENSPKIG00000008088)	TSPAN14 (ENSPKIG00000008121)	bms1 (ENSPKIG00000008165)	mxtx2 (ENSPKIG00000008236) ##31	tmem254 (ENSPKIG00000008259) #34	STK32C (ENSPKIG00000008332) #25	valopb (ENSPKIG00000008500) #22	ENSPKIG00000008530 ##10	ENSPKIG00000008543	ENSPKIG00000008554	PLA2G12B (ENSPKIG00000008564)	abcg2c (ENSPKIG00000008594)	pigf (ENSPKIG00000008632)	cript (ENSPKIG00000008644)	calm2a (ENSPKIG00000008660)	epcam (ENSPKIG00000008710)	msh2 (ENSPKIG00000008812)	ENSPKIG00000008978 ##17	ENSPKIG00000009288 ##17	COX7A2L (ENSPKIG00000009622)	KCNG3 (ENSPKIG00000009631)	mta3 (ENSPKIG00000009654)
Asian bonytongue	DUPLICATION
Asian bonytongue	MODERN SPECIES	23	trmt2b (ENSSFOG00015006392)	prdx3 (ENSSFOG00015006374)	eif3s10 (ENSSFOG00015006358)	emx2 (ENSSFOG00015006336)	RAB11FIP2 (ENSSFOG00015006324)	fam204a (ENSSFOG00015006287)	ENSSFOG00015006266	ENSSFOG00015030926	tspan14 (ENSSFOG00015006187)	ENSSFOG00015006171 #31	ENSSFOG00015006147 #26	STK32C (ENSSFOG00015006082) #25	PWWP2B (ENSSFOG00015027814) #15	INPP5A (ENSSFOG00015005987) #16	nkx6.2 (ENSSFOG00015005965) #19	valopa (ENSSFOG00015028454) #22	ENSSFOG00015005888 #24	ENSSFOG00015005847 #11	ADGRA1 (ENSSFOG00015005403) #10	KNDC1 (ENSSFOG00015005368) #9	ENSSFOG00015026441	ENSSFOG00015005340 #7	ENSSFOG00015005329	dntt (ENSSFOG00015005270)	blnk (ENSSFOG00015005217)	ENSSFOG00015005190	CCNJ (ENSSFOG00015005168)	BTAF1 (ENSSFOG00015005016)	cpeb3 (ENSSFOG00015004974)	marchf5 (ENSSFOG00015004930)	ide (ENSSFOG00015004874)
Asian bonytongue	DUPLICATION
Asian bonytongue	MODERN SPECIES	18	valopb (ENSSFOG00015026361) #22	gabrz (ENSSFOG00015022397) #11	ENSSFOG00015027787	ENSSFOG00015026508	PLA2G12B (ENSSFOG00015026901)	ENSSFOG00015015369	ENSSFOG00015028052	ENSSFOG00015026266	ENSSFOG00015005237	ENSSFOG00015026247	ENSSFOG00015022424	ENSSFOG00015027491	ENSSFOG00015032839	abcg2b (ENSSFOG00015015601)	zgc:63470 (ENSSFOG00015027886)	valopb (ENSSFOG00015025873) #22	ENSSFOG00015026273 #11	ENSSFOG00015029854	PLA2G12B (ENSSFOG00015025372)	ENSSFOG00015025732	ENSSFOG00015024637	ENSSFOG00015005611	ENSSFOG00015032873	ENSSFOG00015028729	zgc:63470 (ENSSFOG00015015590)	rbm4.3 (ENSSFOG00015015563)	pmt (ENSSFOG00015015493)	cnot8 (ENSSFOG00015015453)	ENSSFOG00015014927	tbx20 (ENSSFOG00015014861)	PTPN21 (ENSSFOG00015014833)
Asian bonytongue	MODERN SPECIES	18	VWA2 (ENSSFOG00015022036)	AFAP1L2 (ENSSFOG00015022052)	KBTBD13 (ENSSFOG00015022069)	ablim1b (ENSSFOG00015022079)	fhip2a (ENSSFOG00015022105)	trub1 (ENSSFOG00015022124)	ATRNL1 (ENSSFOG00015022150)	gfra1b (ENSSFOG00015022242)	ENSSFOG00015022263	SH2D4B (ENSSFOG00015022271)	TSPAN14 (ENSSFOG00015022284)	bms1 (ENSSFOG00015022313)	mxtx2 (ENSSFOG00015022353) ##31	tmem254 (ENSSFOG00015030941) #34	STK32C (ENSSFOG00015022367) #25	valopb (ENSSFOG00015026361) #22	gabrz (ENSSFOG00015022397) #11	ENSSFOG00015027787	ENSSFOG00015026508	PLA2G12B (ENSSFOG00015026901)	ENSSFOG00015015369	ENSSFOG00015028052	ENSSFOG00015026266	ENSSFOG00015005237	ENSSFOG00015026247	ENSSFOG00015022424	ENSSFOG00015027491	ENSSFOG00015032839	abcg2b (ENSSFOG00015015601)	zgc:63470 (ENSSFOG00015027886)	valopb (ENSSFOG00015025873) #22
Spotted gar	MODERN SPECIES	671	PTPRE (ENSLOCG00000007653)	ENSLOCG00000007643	MGMT (ENSLOCG00000007632)	ebf3a (ENSLOCG00000007615)	glrx3 (ENSLOCG00000007580)	TCERG1L (ENSLOCG00000007558)	ppp2r2d (ENSLOCG00000007541)	bnip3 (ENSLOCG00000007528)	JAKMIP3 (ENSLOCG00000007499)	dpysl4 (ENSLOCG00000007471)	STK32C (ENSLOCG00000007451) #25	LRRC27 (ENSLOCG00000007441) #14	PWWP2B (ENSLOCG00000007432) #15	INPP5A (ENSLOCG00000007409) #16	nkx6.2 (ENSLOCG00000007395) #19	valopb (ENSLOCG00000007383) #22	ENSLOCG00000007373	CFAP46 (ENSLOCG00000007359) #24	gabrz (ENSLOCG00000007338) #11	ADGRA1 (ENSLOCG00000007306) #10	KNDC1 (ENSLOCG00000007289) #9	vox (ENSLOCG00000007276) #8	ENSLOCG00000018236	dntt (ENSLOCG00000007264)	blnk (ENSLOCG00000007223)	ZNF518A (ENSLOCG00000018235)	CCNJ (ENSLOCG00000007212)	ENSLOCG00000007195	BTAF1 (ENSLOCG00000007169)	cpeb3 (ENSLOCG00000007131)	marchf5 (ENSLOCG00000007112)
Reedfish	MODERN SPECIES	10	foxi1 (ENSECRG00000009638)	CLRN3 (ENSECRG00000009659)	PTPRE (ENSECRG00000009682)	ENSECRG00000009728	MGMT (ENSECRG00000009749)	ebf3a (ENSECRG00000009768)	glrx3 (ENSECRG00000009843)	ppp2r2d (ENSECRG00000009895)	bnip3 (ENSECRG00000010103)	JAKMIP3 (ENSECRG00000010115)	dpysl4 (ENSECRG00000010136)	STK32C (ENSECRG00000010168) #25	PWWP2B (ENSECRG00000010194) #15	INPP5A (ENSECRG00000010209) #16	nkx6.2 (ENSECRG00000010230) #19	valopb (ENSECRG00000010242) #22	ENSECRG00000010254 #24	ENSECRG00000010263 #24	gabrz (ENSECRG00000010274) #11	ADGRA1 (ENSECRG00000010289) #10	ENSECRG00000010300 #9	ENSECRG00000010313 #9	ENSECRG00000010308 #9	vox (ENSECRG00000010317) #8	ENSECRG00000010321 #8	ENSECRG00000010327	dntt (ENSECRG00000010384)	ENSECRG00000010509	ZNF518A (ENSECRG00000000433)	ENSECRG00000000462	CCNJ (ENSECRG00000000521)
Sarcopterygii	ANCESTRAL SPECIES	13	ENSGT00940000156570.a	ENSGT00940000154352.A	ENSGT00390000015799	ENSGT00950000182859.A.b	ENSGT00550000075030	ENSGT00940000160593	ENSGT00950000182864.a.a	ENSGT00390000013415.a.a	ENSGT00940000153713.E	ENSGT01030000234527.A.a.b.a.b	ENSGT00940000160573 #25	ENSGT00390000007203 #14	ENSGT00940000160735 #15	ENSGT00390000015226.d #16	ENSGT00940000161547 #19	ENSGT01030000234549.a.b #22	ENSGT00570000079216 #24	ENSGT00940000164278 #11	ENSGT00940000160175.b #10	ENSGT00390000011408 #9	ENSGT00940000165215 #8	ENSGT00940000164759	ENSGT00940000158584	ENSGT00940000156981	ENSGT00940000156590	ENSGT00940000155847	ENSGT00940000157500	ENSGT00940000158949	ENSGT00390000009948.c	ENSGT00940000155780	ENSGT00940000155921
Tetrapoda	ANCESTRAL SPECIES	17	ENSGT00940000156570.a	ENSGT00940000154352.A	ENSGT00390000015799	ENSGT00950000182859.A.b	ENSGT00550000075030	ENSGT00940000160593	ENSGT00950000182864.a.a	ENSGT00390000013415.a.a	ENSGT00940000153713.E	ENSGT01030000234527.A.a.b.a.b	ENSGT00940000160573 #25	ENSGT00390000007203 #14	ENSGT00940000160735 #15	ENSGT00390000015226.d #16	ENSGT00940000161547 #19	ENSGT01030000234549.a.b #22	ENSGT00570000079216 #24	ENSGT00940000164278 #11	ENSGT00940000160175.b #10	ENSGT00390000011408 #9	ENSGT00940000165215 #8	ENSGT00940000164759	ENSGT00940000158584	ENSGT00940000155715	ENSGT00940000162006	ENSGT00940000156981	ENSGT00940000156590	ENSGT00940000155847	ENSGT00940000157500	ENSGT00940000158949	ENSGT00390000009948.c
Amniota	ANCESTRAL SPECIES	10	ENSGT00850000132319.b	ENSGT00940000156570.a	ENSGT00390000015799	ENSGT00950000182859.A.b	ENSGT00550000075030	ENSGT00940000160593	ENSGT00950000182864.a.a	ENSGT00390000013415.a.a	ENSGT00940000153713.E	ENSGT01030000234527.A.a.b.a.b	ENSGT00940000160573 #25	ENSGT00390000007203 #14	ENSGT00940000160735 #15	ENSGT00390000015226.d #16	ENSGT00940000161547 #19	ENSGT01030000234549.a.b #22	ENSGT00570000079216 #24	ENSGT00940000164278 #11	ENSGT00940000160175.b #10	ENSGT00390000011408 #9	ENSGT00940000163757	ENSGT00940000165215 #8	ENSGT00940000164759	ENSGT00940000158584	ENSGT00940000155715	ENSGT00940000162006	ENSGT00940000156981	ENSGT00940000156590	ENSGT00940000155847	ENSGT00940000157500	ENSGT00940000158949
Sauria	ANCESTRAL SPECIES	8	ENSGT00850000132319.b	ENSGT00940000156570.a	ENSGT00390000015799	ENSGT00950000182859.A.b	ENSGT00550000075030	ENSGT00940000160593	ENSGT00950000182864.a.a	ENSGT00390000013415.a.a	ENSGT00940000153713.E	ENSGT01030000234527.A.a.b.a.b	ENSGT00940000160573 #25	ENSGT00390000007203 #14	ENSGT00940000160735 #15	ENSGT00390000015226.d #16	ENSGT00940000161547 #19	ENSGT01030000234549.a.b #22	ENSGT00570000079216 #24	ENSGT00940000164278 #11	ENSGT00940000160175.b #10	ENSGT00390000011408 #9	ENSGT00940000163757	ENSGT00940000165215 #8	ENSGT00940000164759	ENSGT00940000158584	ENSGT00940000155715	ENSGT00940000162006	ENSGT00940000156981	ENSGT00940000156590	ENSGT00940000157500	ENSGT00940000158949	ENSGT00390000009948.c
Archelosauria	ANCESTRAL SPECIES	10	ENSGT00850000132319.b	ENSGT00940000156570.a	ENSGT00390000015799	ENSGT00950000182859.A.b	ENSGT00550000075030	ENSGT00940000160593	ENSGT00950000182864.a.a	ENSGT00390000013415.a.a	ENSGT00940000153713.E	ENSGT01030000234527.A.a.b.a.b	ENSGT00940000160573 #25	ENSGT00390000007203 #14	ENSGT00940000160735 #15	ENSGT00390000015226.d #16	ENSGT00940000161547 #19	ENSGT01030000234549.a.b #22	ENSGT00570000079216 #24	ENSGT00940000164278 #11	ENSGT00940000160175.b #10	ENSGT00390000011408 #9	ENSGT00940000163757	ENSGT00940000165097.b	ENSGT00940000165097.a	ENSGT00940000165215 #8	ENSGT00940000164759	ENSGT00940000158584	ENSGT00940000155715	ENSGT00940000162006	ENSGT00940000156981	ENSGT00940000156590	ENSGT00940000155847
Archosauria	ANCESTRAL SPECIES	7	ENSGT00850000132319.b	ENSGT00940000156570.a	ENSGT00390000015799	ENSGT00950000182859.A.b	ENSGT00550000075030	ENSGT00940000160593	ENSGT00950000182864.a.a	ENSGT00390000013415.a.a	ENSGT00940000153713.E	ENSGT01030000234527.A.a.b.a.b	ENSGT00940000160573 #25	ENSGT00390000007203 #14	ENSGT00940000160735 #15	ENSGT00390000015226.d #16	ENSGT00940000161547 #19	ENSGT01030000234549.a.b #22	ENSGT00570000079216 #24
Aves	ANCESTRAL SPECIES	6	ENSGT00850000132319.b	ENSGT00940000156570.a	ENSGT00390000015799	ENSGT00950000182859.A.b	ENSGT00550000075030	ENSGT00940000160593	ENSGT00950000182864.a.a	ENSGT00390000013415.a.a	ENSGT00940000153713.E	ENSGT01030000234527.A.a.b.a.b	ENSGT00940000160573 #25	ENSGT00390000007203 #14	ENSGT00940000160735 #15	ENSGT00390000015226.d #16	ENSGT00940000161547 #19	ENSGT01030000234549.a.b #22	ENSGT00570000079216 #24	ENSGT00570000079101.a.a	ENSGT00500000044903
Neognathae	ANCESTRAL SPECIES	7	ENSGT00850000132319.b	ENSGT00940000156570.a	ENSGT00390000015799	ENSGT00950000182859.A.b	ENSGT00550000075030	ENSGT00940000160593	ENSGT00950000182864.a.a	ENSGT00390000013415.a.a	ENSGT00940000153713.E	ENSGT01030000234527.A.a.b.a.b	ENSGT00940000160573 #25	ENSGT00390000007203 #14	ENSGT00940000160735 #15	ENSGT00390000015226.d #16	ENSGT00940000161547 #19	ENSGT01030000234549.a.b #22	ENSGT00570000079216 #24	ENSGT00570000079101.a.a	ENSGT00500000044903
Galloanserae	ANCESTRAL SPECIES	6	ENSGT00850000132319.b	ENSGT00940000156570.a	ENSGT00390000015799	ENSGT00950000182859.A.b	ENSGT00550000075030	ENSGT00940000160593	ENSGT00950000182864.a.a	ENSGT00390000013415.a.a	ENSGT00940000153713.E	ENSGT01030000234527.A.a.b.a.b	ENSGT00940000160573 #25	ENSGT00390000007203 #14	ENSGT00940000160735 #15	ENSGT00390000015226.d #16	ENSGT00940000161547 #19	ENSGT01030000234549.a.b #22	ENSGT00570000079216 #24	ENSGT00570000079101.a.a	ENSGT00500000044903
Anatidae	ANCESTRAL SPECIES	4	ENSGT00850000132319.b	ENSGT00940000156570.a	ENSGT00390000015799	ENSGT00950000182859.A.b	ENSGT00550000075030	ENSGT00940000160593	ENSGT00950000182864.a.a	ENSGT00390000013415.a.a	ENSGT00940000153713.E	ENSGT01030000234527.A.a.b.a.b	ENSGT00940000160573 #25	ENSGT00390000007203 #14	ENSGT00940000160735 #15	ENSGT00390000015226.d #16	ENSGT00940000161547 #19	ENSGT01030000234549.a.b #22	ENSGT00570000079216 #24	ENSGT00570000079101.a.a	ENSGT00500000044903
Duck	MODERN SPECIES	24	CLRN3 (ENSAPLG00000023018)	PTPRE (ENSAPLG00000009861)	MGMT (ENSAPLG00000030688)	ENSAPLG00000012647	GLRX3 (ENSAPLG00000012790)	TCERG1L (ENSAPLG00000012399)	PPP2R2D (ENSAPLG00000006225)	BNIP3 (ENSAPLG00000005950)	JAKMIP3 (ENSAPLG00000003318)	DPYSL4 (ENSAPLG00000003668)	STK32C (ENSAPLG00000004989) #25	ENSAPLG00000018848	LRRC27 (ENSAPLG00000023192) #14	PWWP2B (ENSAPLG00000005281) #15	INPP5A (ENSAPLG00000005286) #16	ENSAPLG00000005542 #22	ENSAPLG00000006027 #24	TCTN3 (ENSAPLG00000006229)	ALDH18A1 (ENSAPLG00000006363)
Pink-footed goose	MODERN SPECIES	429														INPP5A (ENSABRG00000009429) #16	NKX6-2 (ENSABRG00000009610) #19	ENSABRG00000009632 #22	TCTN3 (ENSABRG00000009667)	ALDH18A1 (ENSABRG00000009704)
Phasianidae	ANCESTRAL SPECIES	6	ENSGT00400000024769	ENSGT00850000132319.b	ENSGT00940000156570.a	ENSGT00390000015799	ENSGT00950000182859.A.b	ENSGT00550000075030	ENSGT00940000160593	ENSGT00950000182864.a.a	ENSGT00390000013415.a.a	ENSGT00940000153713.E	ENSGT01030000234527.A.a.b.a.b	ENSGT00940000160573 #25	ENSGT00940000160735 #15	ENSGT00390000015226.d #16	ENSGT00940000161547 #19	ENSGT01030000234549.a.b #22	ENSGT00570000079101.a.a	ENSGT00500000044903
Phasianidae_b	ANCESTRAL SPECIES	6	ENSGT00400000024769	ENSGT00850000132319.b	ENSGT00940000156570.a	ENSGT00390000015799	ENSGT00950000182859.A.b	ENSGT00550000075030	ENSGT00940000160593	ENSGT00950000182864.a.a	ENSGT00390000013415.a.a	ENSGT00940000153713.E	ENSGT01030000234527.A.a.b.a.b	ENSGT00940000160573 #25	ENSGT00940000160735 #15	ENSGT00390000015226.d #16	ENSGT00940000161547 #19	ENSGT01030000234549.a.b #22	ENSGT00570000079101.a.a	ENSGT00500000044903
Chicken	MODERN SPECIES	35	CLRN3 (ENSGALG00010002617)	PTPRE (ENSGALG00010002712)	ENSGALG00010002750	MGMT (ENSGALG00010001308)	EBF3 (ENSGALG00010001334)	GLRX3 (ENSGALG00010001353)	TCERG1L (ENSGALG00010001358)	PPP2R2D (ENSGALG00010001369)	BNIP3 (ENSGALG00010001382)	JAKMIP3 (ENSGALG00010001480)	DPYSL4 (ENSGALG00010001506)	STK32C (ENSGALG00010001527) #25	PWWP2B (ENSGALG00010001547) #15	INPP5A (ENSGALG00010001567) #16	NKX6-2 (ENSGALG00010001577) #19	OPNVA (ENSGALG00010001616) #22	TCTN3 (ENSGALG00010001661)	ALDH18A1 (ENSGALG00010001692)
Turkey	MODERN SPECIES	28	ENSMGAG00000011398	BAG3 (ENSMGAG00000011390)	ENSMGAG00000011368	ENSMGAG00000017692	ENSMGAG00000011359	ENSMGAG00000011341	ENSMGAG00000011337	ENSMGAG00000011324	ENSMGAG00000011328	ENSMGAG00000011305	ENSMGAG00000011298	ENSMGAG00000015338	ENSMGAG00000011290	ENSMGAG00000011914	ENSMGAG00000011912	ENSMGAG00000011907 #22	ENSMGAG00000015341 #19	ENSMGAG00000011899 #15	ENSMGAG00000011859 #25	ENSMGAG00000011869	JAKMIP3 (ENSMGAG00000011861)	ENSMGAG00000019998	ENSMGAG00000011837	ENSMGAG00000011844	GLRX3 (ENSMGAG00000012648)	ENSMGAG00000016563	ENSMGAG00000011826
Japanese quail	MODERN SPECIES	24	CLRN3 (ENSCJPG00005001282)	PTPRE (ENSCJPG00005001286)	ENSCJPG00005001294	MGMT (ENSCJPG00005001320)	EBF3 (ENSCJPG00005001333)	GLRX3 (ENSCJPG00005001349)	TCERG1L (ENSCJPG00005001381)	PPP2R2D (ENSCJPG00005001393)	ENSCJPG00005001397	JAKMIP3 (ENSCJPG00005001465)	DPYSL4 (ENSCJPG00005001567)	STK32C (ENSCJPG00005004188) #25	PWWP2B (ENSCJPG00005004191) #15	INPP5A (ENSCJPG00005004193) #16	NKX6-2 (ENSCJPG00005004206) #19	ENSCJPG00005004208 #22	ENSCJPG00005004209	ALDH18A1 (ENSCJPG00005004248)
Neognathae_b	ANCESTRAL SPECIES	8	ENSGT00850000132319.b	ENSGT00940000156570.a	ENSGT00390000015799	ENSGT00950000182859.A.b	ENSGT00550000075030	ENSGT00940000160593	ENSGT00950000182864.a.a	ENSGT00390000013415.a.a	ENSGT00940000153713.E	ENSGT01030000234527.A.a.b.a.b	ENSGT00940000160573 #25	ENSGT00390000007203 #14	ENSGT00940000160735 #15	ENSGT00390000015226.d #16	ENSGT00940000161547 #19	ENSGT01030000234549.a.b #22	ENSGT00570000079216 #24	ENSGT00570000079101.a.a	ENSGT00500000044903
Passeriformes	ANCESTRAL SPECIES	10	ENSGT00940000170313	ENSGT00850000132319.b	ENSGT00940000156570.a	ENSGT00390000015799	ENSGT00950000182859.A.b	ENSGT00550000075030	ENSGT00940000160593	ENSGT00950000182864.a.a	ENSGT00390000013415.a.a	ENSGT00940000153713.E	ENSGT01030000234527.A.a.b.a.b	ENSGT00940000160573 #25	ENSGT00940000160735 #15	ENSGT00390000015226.d #16	ENSGT00940000161547 #19	ENSGT01030000234549.a.b #22	ENSGT00570000079216 #24	ENSGT00570000079101.a.a	ENSGT00500000044903	ENSGT00550000074897
Great tit	MODERN SPECIES	26	EBF3 (ENSPMJG00000005976)	ENSPMJG00000005982	TCERG1L (ENSPMJG00000005986)	ENSPMJG00000005989	ENSPMJG00000005996	GLRX3 (ENSPMJG00000006006)	ENSPMJG00000006022	ENSPMJG00000006025	BNIP3 (ENSPMJG00000006026)	JAKMIP3 (ENSPMJG00000006028)	DPYSL4 (ENSPMJG00000006037)	STK32C (ENSPMJG00000006041) #25	ENSPMJG00000006106 #15	INPP5A (ENSPMJG00000006120) #16	NKX6-2 (ENSPMJG00000006128) #19	ENSPMJG00000006130 #22	ENSPMJG00000006139 #24	ENSPMJG00000006140 #24	TCTN3 (ENSPMJG00000006142)	ALDH18A1 (ENSPMJG00000006143)	MSH4 (ENSPMJG00000006147)
Passeriformes_d	ANCESTRAL SPECIES	7	ENSGT00940000170313	ENSGT00850000132319.b	ENSGT00940000156570.a	ENSGT00390000015799	ENSGT00950000182859.A.b	ENSGT00550000075030	ENSGT00940000160593	ENSGT00950000182864.a.a	ENSGT00390000013415.a.a	ENSGT00940000153713.E	ENSGT01030000234527.A.a.b.a.b	ENSGT00940000160573 #25	ENSGT00940000160735 #15	ENSGT00390000015226.d #16	ENSGT00940000161547 #19	ENSGT01030000234549.a.b #22	ENSGT00570000079216 #24	ENSGT00570000079101.a.a	ENSGT00500000044903	ENSGT00550000074897
Passeriformes_g	ANCESTRAL SPECIES	8	ENSGT00850000132319.b	ENSGT00940000156570.a	ENSGT00390000015799	ENSGT00950000182859.A.b	ENSGT00550000075030	ENSGT00940000160593	ENSGT00950000182864.a.a	ENSGT00390000013415.a.a	ENSGT00940000153713.E	ENSGT01030000234527.A.a.b.a.b	ENSGT00940000160573.b #25	ENSGT00940000160573.a #25	ENSGT00940000160735 #15	ENSGT00390000015226.d #16	ENSGT00940000161547 #19	ENSGT01030000234549.a.b #22	ENSGT00570000079216 #24	ENSGT00570000079101.a.a	ENSGT00500000044903	ENSGT00550000074897
Medium ground finch	MODERN SPECIES	209						GLRX3 (ENSGFOG00000012943)	TCERG1L (ENSGFOG00000012940)	PPP2R2D (ENSGFOG00000012930)	ENSGFOG00000012926	ENSGFOG00000012923	JAKMIP3 (ENSGFOG00000012917)	DPYSL4 (ENSGFOG00000012910)	STK32C (ENSGFOG00000012902) #25	INPP5A (ENSGFOG00000012867) #16	NKX6-2 (ENSGFOG00000012858) #19	ENSGFOG00000012853 #22	ENSGFOG00000012845 #24	ENSGFOG00000012834 #24	TCTN3 (ENSGFOG00000012822)	ALDH18A1 (ENSGFOG00000012654)	MSH4 (ENSGFOG00000012630)
Passeroidea	ANCESTRAL SPECIES	7	ENSGT00940000170313	ENSGT00850000132319.b	ENSGT00940000156570.a	ENSGT00390000015799	ENSGT00950000182859.A.b	ENSGT00550000075030	ENSGT00940000160593	ENSGT00950000182864.a.a	ENSGT00390000013415.a.a	ENSGT00940000153713.E	ENSGT01030000234527.A.a.b.a.b	ENSGT00940000160573.a #25	ENSGT00940000160735 #15	ENSGT00390000015226.d #16	ENSGT00940000161547 #19	ENSGT01030000234549.a.b #22	ENSGT00570000079216 #24	ENSGT00570000079101.a.a	ENSGT00500000044903	ENSGT00550000074897
Zebra finch	MODERN SPECIES	28	BNIP3 (ENSTGUG00000022111)	ENSTGUG00000011644	ENSTGUG00000011657	ENSTGUG00000011662 #25	ENSTGUG00000011674 #15	ENSTGUG00000020450	ENSTGUG00000011634	ENSTGUG00000025290	ENSTGUG00000021176	ENSTGUG00000027640	ENSTGUG00000022770	ENSTGUG00000029017 #25	ENSTGUG00000025617 #15	INPP5A (ENSTGUG00000011675) #16	NKX6-2 (ENSTGUG00000011692) #19	ENSTGUG00000011694 #22	ENSTGUG00000026788 #24	ENSTGUG00000011696 #24	ALDH18A1 (ENSTGUG00000011707)	MSH4 (ENSTGUG00000010473)
Common canary	MODERN SPECIES	7	ENSSCAG00000010598	MGMT (ENSSCAG00000010591)	EBF3 (ENSSCAG00000010428)	GLRX3 (ENSSCAG00000010380)	ENSSCAG00000010378	TCERG1L (ENSSCAG00000010367)	ENSSCAG00000010361	PPP2R2D (ENSSCAG00000010356)	BNIP3 (ENSSCAG00000010352)	JAKMIP3 (ENSSCAG00000010331)	DPYSL4 (ENSSCAG00000010192)	STK32C (ENSSCAG00000010150) #25	ENSSCAG00000010141 #15	INPP5A (ENSSCAG00000010070) #16	NKX6-2 (ENSSCAG00000010038) #19	ENSSCAG00000010025 #22	ENSSCAG00000010010 #24	TCTN3 (ENSSCAG00000009979)	ALDH18A1 (ENSSCAG00000009961)	MSH4 (ENSSCAG00000009902)
Flycatcher	MODERN SPECIES	25	MGMT (ENSFALG00000001209)	EBF3 (ENSFALG00000001212)	GLRX3 (ENSFALG00000001218)	TCERG1L (ENSFALG00000027291)	ENSFALG00000023916	PPP2R2D (ENSFALG00000001234)	BNIP3 (ENSFALG00000001247)	ENSFALG00000023307	JAKMIP3 (ENSFALG00000001258)	ENSFALG00000001278	DPYSL4 (ENSFALG00000027125)	STK32C (ENSFALG00000001306) #25	ENSFALG00000022932 #15	INPP5A (ENSFALG00000001313) #16	NKX6-2 (ENSFALG00000001316) #19	ENSFALG00000001323 #22	ENSFALG00000027003 #24	ENSFALG00000001338 #24	ENSFALG00000001351	ENSFALG00000001353
Neognathae_c	ANCESTRAL SPECIES	8	ENSGT00850000132319.b	ENSGT00940000156570.a	ENSGT00390000015799	ENSGT00950000182859.A.b	ENSGT00550000075030	ENSGT00940000160593	ENSGT00950000182864.a.a	ENSGT00390000013415.a.a	ENSGT00940000153713.E	ENSGT01030000234527.A.a.b.a.b	ENSGT00940000160573 #25	ENSGT00390000007203 #14	ENSGT00940000160735 #15	ENSGT00390000015226.d #16	ENSGT00940000161547 #19	ENSGT01030000234549.a.b #22	ENSGT00570000079216 #24	ENSGT00570000079101.a.a	ENSGT00500000044903
Kakapo	MODERN SPECIES	22	ENSSHBG00005007545	ENSSHBG00005007566	MGMT (ENSSHBG00005007589)	EBF3 (ENSSHBG00005007619)	GLRX3 (ENSSHBG00005007676)	TCERG1L (ENSSHBG00005007703)	PPP2R2D (ENSSHBG00005007723)	BNIP3 (ENSSHBG00005007749)	JAKMIP3 (ENSSHBG00005007771)	DPYSL4 (ENSSHBG00005007798)	STK32C (ENSSHBG00005007817) #25	ENSSHBG00005007862 #14	PWWP2B (ENSSHBG00005007882) #15	INPP5A (ENSSHBG00005007898) #16	NKX6-2 (ENSSHBG00005007927) #19	ENSSHBG00005007953 #22	ENSSHBG00005000327 #24	TCTN3 (ENSSHBG00005000332)	ALDH18A1 (ENSSHBG00005000335)
Golden eagle	MODERN SPECIES	2	CLRN3 (ENSACCG00020005951)	PTPRE (ENSACCG00020005933)	MGMT (ENSACCG00020005905)	EBF3 (ENSACCG00020005883)	GLRX3 (ENSACCG00020005849)	TCERG1L (ENSACCG00020005831)	PPP2R2D (ENSACCG00020005812)	BNIP3 (ENSACCG00020005794)	JAKMIP3 (ENSACCG00020005746)	DPYSL4 (ENSACCG00020005629)	STK32C (ENSACCG00020005571) #25	LRRC27 (ENSACCG00020005494) #14	PWWP2B (ENSACCG00020005473) #15	INPP5A (ENSACCG00020005453) #16	NKX6-2 (ENSACCG00020005430) #19	ENSACCG00020005416 #22	ENSACCG00020005371 #24	TCTN3 (ENSACCG00020005331)	ALDH18A1 (ENSACCG00020005309)
African ostrich	MODERN SPECIES	463	ENSSCUG00000007692	MGMT (ENSSCUG00000007684)	ENSSCUG00000007680	ENSSCUG00000007676	GLRX3 (ENSSCUG00000007671)	TCERG1L (ENSSCUG00000007664)	ENSSCUG00000007658	PPP2R2D (ENSSCUG00000007655)	BNIP3 (ENSSCUG00000007653)	JAKMIP3 (ENSSCUG00000007646)	DPYSL4 (ENSSCUG00000007637)	STK32C (ENSSCUG00000007622) #25	LRRC27 (ENSSCUG00000007618) #14	PWWP2B (ENSSCUG00000007616) #15	INPP5A (ENSSCUG00000007608) #16	ENSSCUG00000007601 #22	ENSSCUG00000007590 #24	ENSSCUG00000007588 #24	TCTN3 (ENSSCUG00000007583)	ALDH18A1 (ENSSCUG00000007529)
Australian saltwater crocodile	MODERN SPECIES	68	PTPRE (ENSCPRG00005009590)	ENSCPRG00005009575	MGMT (ENSCPRG00005009563)	EBF3 (ENSCPRG00005009556)	GLRX3 (ENSCPRG00005009549)	TCERG1L (ENSCPRG00005009534)	PPP2R2D (ENSCPRG00005009526)	BNIP3 (ENSCPRG00005009525)	JAKMIP3 (ENSCPRG00005009443)	DPYSL4 (ENSCPRG00005007536)	STK32C (ENSCPRG00005007162) #25	LRRC27 (ENSCPRG00005007134) #14	PWWP2B (ENSCPRG00005007131) #15	INPP5A (ENSCPRG00005007113) #16	NKX6-2 (ENSCPRG00005007090) #19	ENSCPRG00005007089 #22	ENSCPRG00005007081 #24
Cryptodira	ANCESTRAL SPECIES	6	ENSGT00850000132319.b	ENSGT00940000156570.a	ENSGT00390000015799	ENSGT00950000182859.A.b	ENSGT00550000075030	ENSGT00940000160593	ENSGT00950000182864.a.a	ENSGT00390000013415.a.a	ENSGT00940000153713.E	ENSGT01030000234527.A.a.b.a.b	ENSGT00940000160573 #25	ENSGT00390000007203 #14	ENSGT00940000160735 #15	ENSGT00390000015226.d #16	ENSGT00940000161547 #19	ENSGT01030000234549.a.b #22	ENSGT00570000079216 #24	ENSGT00940000164278 #11	ENSGT00940000160175.b #10	ENSGT00390000011408 #9	ENSGT00940000163757	ENSGT00960000190513	ENSGT00940000165215 #8	ENSGT00940000164759	ENSGT00940000158584	ENSGT00940000155715	ENSGT00940000162006	ENSGT00940000156981	ENSGT00940000168004	ENSGT00940000173803	ENSGT00940000157500
Testudinoidea	ANCESTRAL SPECIES	2	ENSGT00850000132319.b	ENSGT00940000156570.a.k	ENSGT00390000015799	ENSGT00950000182859.A.b	ENSGT00550000075030	ENSGT00940000160593	ENSGT00950000182864.a.a	ENSGT00390000013415.a.a	ENSGT00940000153713.E	ENSGT01030000234527.A.a.b.a.b	ENSGT00940000160573 #25	ENSGT00390000007203 #14	ENSGT00940000160735 #15	ENSGT00390000015226.d #16	ENSGT00940000161547 #19	ENSGT01030000234549.a.b #22	ENSGT00570000079216 #24	ENSGT00940000164278 #11	ENSGT00940000160175.b #10	ENSGT00390000011408 #9	ENSGT00940000163757	ENSGT00960000190513	ENSGT00940000165097.a	ENSGT00940000164759	ENSGT00940000158584	ENSGT00940000155715	ENSGT00940000162006	ENSGT00940000156981	ENSGT00940000168004	ENSGT00940000173803	ENSGT00940000157500
Testudinidae	ANCESTRAL SPECIES	9	ENSGT00940000156570.a.l	ENSGT00940000154352.A	ENSGT00390000015799	ENSGT00950000182859.A.b	ENSGT00550000075030	ENSGT00940000160593	ENSGT00950000182864.a.a	ENSGT00390000013415.a.a	ENSGT00940000153713.E	ENSGT01030000234527.A.a.b.a.b	ENSGT00940000160573 #25	ENSGT00390000007203 #14	ENSGT00940000160735 #15	ENSGT00390000015226.d #16	ENSGT00940000161547 #19	ENSGT01030000234549.a.b #22	ENSGT00570000079216 #24	ENSGT00940000164278 #11	ENSGT00940000160175.b #10	ENSGT00390000011408 #9	ENSGT00940000163757	ENSGT00940000164759	ENSGT00940000158584	ENSGT00940000155715	ENSGT00940000162006	ENSGT00940000156981	ENSGT00940000156590	ENSGT00940000173803	ENSGT00940000157500	ENSGT00940000158949	ENSGT00390000009948.c
Goode s thornscrub tortoise	MODERN SPECIES	21	ENSGEVG00005017481	MGMT (ENSGEVG00005017500)	EBF3 (ENSGEVG00005017519)	ENSGEVG00005017678	GLRX3 (ENSGEVG00005017697)	TCERG1L (ENSGEVG00005017717)	PPP2R2D (ENSGEVG00005017762)	BNIP3 (ENSGEVG00005017778)	JAKMIP3 (ENSGEVG00005017824)	DPYSL4 (ENSGEVG00005018161)	STK32C (ENSGEVG00005018456) #25	LRRC27 (ENSGEVG00005018494) #14	PWWP2B (ENSGEVG00005018522) #15	INPP5A (ENSGEVG00005018557) #16	NKX6-2 (ENSGEVG00005018624) #19	ENSGEVG00005018656 #22	ENSGEVG00005018702 #24	ENSGEVG00005018774 #11	ADGRA1 (ENSGEVG00005018796) #10	ENSGEVG00005018812 #9	ENSGEVG00005018828	ENSGEVG00005018861	ENSGEVG00005018876	ENSGEVG00005018893	ENSGEVG00005018903	DNTT (ENSGEVG00005018928)	BLNK (ENSGEVG00005019008)	ZNF518A (ENSGEVG00005019060)	CCNJ (ENSGEVG00005019063)	ENSGEVG00005019083	ENSGEVG00005019092
Abingdon island giant tortoise	MODERN SPECIES	2115							PPP2R2D (ENSCABG00000017675)	BNIP3 (ENSCABG00000017627)	JAKMIP3 (ENSCABG00000017570)	DPYSL4 (ENSCABG00000017509)	STK32C (ENSCABG00000017467) #25	LRRC27 (ENSCABG00000017462) #14	PWWP2B (ENSCABG00000017457) #15	INPP5A (ENSCABG00000017443) #16	NKX6-2 (ENSCABG00000017441) #19	ENSCABG00000017439 #22	ENSCABG00000017434 #24
Emydidae	ANCESTRAL SPECIES	6	ENSGT00850000132319.b	ENSGT00940000156570.a.k	ENSGT00390000015799	ENSGT00950000182859.A.b	ENSGT00550000075030	ENSGT00940000160593	ENSGT00950000182864.a.a	ENSGT00390000013415.a.a	ENSGT00940000153713.E	ENSGT01030000234527.A.a.b.a.b	ENSGT00940000160573 #25	ENSGT00390000007203 #14	ENSGT00940000160735 #15	ENSGT00390000015226.d #16	ENSGT00940000161547 #19	ENSGT01030000234549.a.b #22	ENSGT00570000079216 #24	ENSGT00940000164278 #11	ENSGT00940000160175.b #10	ENSGT00390000011408 #9	ENSGT00940000163757	ENSGT00960000190513	ENSGT00940000165097.a	ENSGT00940000164759	ENSGT00940000158584	ENSGT00940000155715	ENSGT00940000162006	ENSGT00940000156981	ENSGT00940000168004	ENSGT00940000157500	ENSGT00940000158949
Three-toed box turtle	MODERN SPECIES	39	ENSTMTG00000014237	ENSTMTG00000014255	MGMT (ENSTMTG00000014270)	EBF3 (ENSTMTG00000014291)	GLRX3 (ENSTMTG00000014369)	TCERG1L (ENSTMTG00000014402)	PPP2R2D (ENSTMTG00000014455)	BNIP3 (ENSTMTG00000014470)	JAKMIP3 (ENSTMTG00000014491)	DPYSL4 (ENSTMTG00000014557)	STK32C (ENSTMTG00000014863) #25	LRRC27 (ENSTMTG00000014898) #14	PWWP2B (ENSTMTG00000014912) #15	INPP5A (ENSTMTG00000014936) #16	NKX6-2 (ENSTMTG00000014987) #19	ENSTMTG00000015005 #22	ENSTMTG00000015034 #24	ENSTMTG00000015068 #11	ENSTMTG00000015098	ADGRA1 (ENSTMTG00000015104) #10	ENSTMTG00000015113 #9	ENSTMTG00000015121	ENSTMTG00000015145	DNTT (ENSTMTG00000015164)	ENSTMTG00000015246	ZNF518A (ENSTMTG00000015255)	CCNJ (ENSTMTG00000015257)	ENSTMTG00000015270	BTAF1 (ENSTMTG00000015288)	CPEB3 (ENSTMTG00000015321)	MARCHF5 (ENSTMTG00000015344)
painted turtle	MODERN SPECIES	801						TCERG1L (ENSCPBG00000013586)	PPP2R2D (ENSCPBG00000013593)	BNIP3 (ENSCPBG00000013596)	JAKMIP3 (ENSCPBG00000013601)	DPYSL4 (ENSCPBG00000013611)	STK32C (ENSCPBG00000013633) #25	LRRC27 (ENSCPBG00000014005) #14	PWWP2B (ENSCPBG00000014006) #15	INPP5A (ENSCPBG00000014008) #16	NKX6-2 (ENSCPBG00000014010) #19	ENSCPBG00000014011 #22	ENSCPBG00000014012 #24	ENSCPBG00000014013 #24	ENSCPBG00000014016 #24	ENSCPBG00000014018 #11
Chinese turtle	MODERN SPECIES	2119		MGMT (ENSPSIG00000017405)	EBF3 (ENSPSIG00000016691)	GLRX3 (ENSPSIG00000016674)	ENSPSIG00000000994 ##35	TCERG1L (ENSPSIG00000016629)	PPP2R2D (ENSPSIG00000016439)	BNIP3 (ENSPSIG00000016160)	JAKMIP3 (ENSPSIG00000015597)	DPYSL4 (ENSPSIG00000012836)	STK32C (ENSPSIG00000011894) #25	LRRC27 (ENSPSIG00000011645) #14	PWWP2B (ENSPSIG00000000984) #15	INPP5A (ENSPSIG00000010759) #16	NKX6-2 (ENSPSIG00000010754) #19	ENSPSIG00000010623 #22	ENSPSIG00000010241 #24	ENSPSIG00000000977	CFAP46 (ENSPSIG00000008511) #24
Lepidosauria	ANCESTRAL SPECIES	8	ENSGT00940000156570.a	ENSGT00940000154352.A	ENSGT00390000015799	ENSGT00950000182859.A.b	ENSGT00550000075030	ENSGT00940000160593	ENSGT00950000182864.a.a	ENSGT00390000013415.a.a	ENSGT00940000153713.E	ENSGT01030000234527.A.a.b.a.b	ENSGT00940000160573 #25	ENSGT00390000007203 #14	ENSGT00940000160735 #15	ENSGT00390000015226.d #16	ENSGT00940000161547 #19	ENSGT01030000234549.a.b #22	ENSGT00570000079216 #24	ENSGT00940000164278 #11	ENSGT00940000160175.b #10	ENSGT00390000011408 #9	ENSGT00940000163757	ENSGT00960000190513	ENSGT00940000164759	ENSGT00940000158584	ENSGT00940000155715	ENSGT00940000162006	ENSGT00940000156981	ENSGT00940000156590	ENSGT00940000157500	ENSGT00940000158949	ENSGT00390000009948.c
Episquamata	ANCESTRAL SPECIES	2	ENSGT00940000156570.a	ENSGT00940000154352.A	ENSGT00390000015799	ENSGT00950000182859.A.b	ENSGT00550000075030	ENSGT00940000160593	ENSGT00950000182864.a.a	ENSGT00390000013415.a.a	ENSGT00940000153713.E	ENSGT01030000234527.A.a.b.a.b	ENSGT00940000160573 #25	ENSGT00390000007203 #14	ENSGT00940000160735 #15	ENSGT00390000015226.d #16	ENSGT00940000161547 #19	ENSGT01030000234549.a.b #22	ENSGT00570000079216 #24	ENSGT00940000164278 #11	ENSGT00940000160175.b #10	ENSGT00390000011408 #9	ENSGT00940000163757.b	ENSGT00940000164759	ENSGT00940000158584	ENSGT00940000155715	ENSGT00940000162006	ENSGT00940000156981	ENSGT00940000156590	ENSGT00940000157500	ENSGT00940000158949	ENSGT00390000009948.c	ENSGT00940000155780
Laterata	ANCESTRAL SPECIES		ENSGT00940000156570.a	ENSGT00940000154352.A	ENSGT00390000015799	ENSGT00950000182859.A.b	ENSGT00550000075030	ENSGT00940000160593	ENSGT00950000182864.a.a	ENSGT00390000013415.a.a	ENSGT00940000153713.E	ENSGT01030000234527.A.a.b.a.b	ENSGT00940000160573 #25	ENSGT00390000007203 #14	ENSGT00940000160735 #15	ENSGT00390000015226.d #16	ENSGT00940000161547 #19	ENSGT01030000234549.a.b #22	ENSGT00570000079216 #24	ENSGT00940000164278 #11	ENSGT00940000160175.b #10	ENSGT00390000011408 #9	ENSGT00940000163757.b	ENSGT00940000164759	ENSGT00940000158584	ENSGT00940000155715	ENSGT00940000162006	ENSGT00940000156981	ENSGT00940000156590	ENSGT00940000157500	ENSGT00940000158949	ENSGT00390000009948.c	ENSGT00940000155780
Common wall lizard	MODERN SPECIES	13	MGMT (ENSPMRG00000005719)	EBF3 (ENSPMRG00000005686)	GLRX3 (ENSPMRG00000005668)	TCERG1L (ENSPMRG00000005659)	PPP2R2D (ENSPMRG00000005644)	BNIP3 (ENSPMRG00000005632)	ENSPMRG00000005434	DPYSL4 (ENSPMRG00000005351)	STK32C (ENSPMRG00000005324) #25	LRRC27 (ENSPMRG00000005316) #14	PWWP2B (ENSPMRG00000005312) #15	ENSPMRG00000005307	ENSPMRG00000005301	INPP5A (ENSPMRG00000005278) #16	NKX6-2 (ENSPMRG00000005270) #19	ENSPMRG00000005267 #22	ENSPMRG00000005259 #24	ENSPMRG00000005244 #24	ENSPMRG00000005237 #11	ENSPMRG00000005211 #24	ENSPMRG00000005205	ADGRA1 (ENSPMRG00000005187) #10	ENSPMRG00000005175 #9	ENSPMRG00000005167	ENSPMRG00000005164	ENSPMRG00000005163	ENSPMRG00000005156	ENSPMRG00000005154	DNTT (ENSPMRG00000005146)	ENSPMRG00000005135	ZNF518A (ENSPMRG00000005130)
Argentine black and white tegu	MODERN SPECIES	22						TCERG1L (ENSSMRG00000014033)	PPP2R2D (ENSSMRG00000014031)	BNIP3 (ENSSMRG00000014029)	JAKMIP3 (ENSSMRG00000013950)	DPYSL4 (ENSSMRG00000013949)	STK32C (ENSSMRG00000013945) #25	LRRC27 (ENSSMRG00000013942) #14	PWWP2B (ENSSMRG00000013940) #15	INPP5A (ENSSMRG00000013919) #16	NKX6-2 (ENSSMRG00000013918) #19	ENSSMRG00000013539 #22	ENSSMRG00000013538	ENSSMRG00000013537 #24	ENSSMRG00000013536 #24	ENSSMRG00000013535 #11	ADGRA1 (ENSSMRG00000013533) #10	ENSSMRG00000013531 #9	ENSSMRG00000013530	ENSSMRG00000013527	DNTT (ENSSMRG00000013503)	ENSSMRG00000013501	ZNF518A (ENSSMRG00000013500)	CCNJ (ENSSMRG00000013498)	CC2D2B (ENSSMRG00000013487)	ENSSMRG00000013486	BTAF1 (ENSSMRG00000013484)
Toxicofera	ANCESTRAL SPECIES	2	ENSGT00940000156570.a	ENSGT00940000154352.A	ENSGT00390000015799	ENSGT00950000182859.A.b	ENSGT00550000075030	ENSGT00940000160593	ENSGT00950000182864.a.a	ENSGT00390000013415.a.a	ENSGT00940000153713.E	ENSGT01030000234527.A.a.b.a.b	ENSGT00940000160573 #25	ENSGT00390000007203 #14	ENSGT00940000160735 #15	ENSGT00390000015226.d #16	ENSGT00940000161547 #19	ENSGT01030000234549.a.b #22	ENSGT00570000079216 #24	ENSGT00940000164278 #11	ENSGT00940000160175.b #10	ENSGT00390000011408 #9	ENSGT00940000163757.b	ENSGT00940000164759	ENSGT00940000158584	ENSGT00940000155715	ENSGT00940000162006	ENSGT00940000156981	ENSGT00940000156590	ENSGT00940000157500	ENSGT00940000158949	ENSGT00390000009948.c	ENSGT00940000155780
Elapidae	ANCESTRAL SPECIES	4	ENSGT00940000156570.a	ENSGT00940000154352.A	ENSGT00390000015799	ENSGT00950000182859.A.b.u	ENSGT00550000075030	ENSGT00940000160593	ENSGT00950000182864.a.a	ENSGT00390000013415.a.a	ENSGT00940000153713.E	ENSGT01030000234527.A.a.b.a.b	ENSGT00940000160573 #25	ENSGT00390000007203 #14	ENSGT00940000160735 #15	ENSGT00390000015226.d #16	ENSGT00940000161547 #19	ENSGT01030000234549.a.b #22	ENSGT00570000079216 #24	ENSGT00940000160175.b #10	ENSGT00390000011408 #9	ENSGT00940000163757.b	ENSGT00940000164759	ENSGT00940000158584	ENSGT00940000155715	ENSGT00940000162006	ENSGT00940000156981	ENSGT00940000156590	ENSGT00940000157500	ENSGT00940000158949	ENSGT00390000009948.c	ENSGT00940000155780	ENSGT00940000155921
Indian cobra	MODERN SPECIES	3	ENSNNAG00000018459	ENSNNAG00000018458	MGMT (ENSNNAG00000018454)	EBF3 (ENSNNAG00000018447)	GLRX3 (ENSNNAG00000018441)	TCERG1L (ENSNNAG00000018427)	PPP2R2D (ENSNNAG00000018421)	BNIP3 (ENSNNAG00000018415)	JAKMIP3 (ENSNNAG00000018405)	DPYSL4 (ENSNNAG00000018387)	STK32C (ENSNNAG00000018377) #25	LRRC27 (ENSNNAG00000018373) #14	PWWP2B (ENSNNAG00000018369) #15	INPP5A (ENSNNAG00000018361) #16	NKX6-2 (ENSNNAG00000018356) #19	ENSNNAG00000018284 #22	ENSNNAG00000018261 #24	ADGRA1 (ENSNNAG00000018253) #10	ENSNNAG00000018247 #9	VENTX (ENSNNAG00000018245)	ENSNNAG00000018241	DNTT (ENSNNAG00000018230)	ENSNNAG00000018212	ZNF518A (ENSNNAG00000018205)	CCNJ (ENSNNAG00000018201)	CC2D2B (ENSNNAG00000018195)	ENSNNAG00000018183	BTAF1 (ENSNNAG00000018161)	CPEB3 (ENSNNAG00000018140)	MARCHF5 (ENSNNAG00000018117)	IDE (ENSNNAG00000018096)
Elapidae_a	ANCESTRAL SPECIES		ENSGT00940000156570.a	ENSGT00940000154352.A	ENSGT00390000015799	ENSGT00950000182859.A.b.u	ENSGT00550000075030	ENSGT00940000160593	ENSGT00950000182864.a.a	ENSGT00390000013415.a.a	ENSGT00940000153713.E	ENSGT01030000234527.A.a.b.a.b	ENSGT00940000160573 #25	ENSGT00390000007203 #14	ENSGT00940000160735 #15	ENSGT00390000015226.d #16	ENSGT00940000161547 #19	ENSGT01030000234549.a.b #22	ENSGT00570000079216 #24	ENSGT00940000160175.b #10	ENSGT00390000011408 #9	ENSGT00960000190513	ENSGT00940000164759	ENSGT00940000158584	ENSGT00940000155715	ENSGT00940000162006	ENSGT00940000156981	ENSGT00940000156590	ENSGT00940000157500	ENSGT00940000158949	ENSGT00390000009948.c	ENSGT00940000155780	ENSGT00940000155921
Acanthophiinae	ANCESTRAL SPECIES	1	ENSGT00940000156570.a	ENSGT00390000015799	ENSGT00950000182859.A.b.u	ENSGT00550000075030	ENSGT00940000160593	ENSGT00950000182864.a.a	ENSGT00390000013415.a.a	ENSGT00940000153713.E	ENSGT01030000234527.A.a.b.a.b	ENSGT00940000160573 #25	ENSGT00390000007203 #14	ENSGT00940000160735 #15	ENSGT00390000013127.a.s	ENSGT00390000015226.d #16	ENSGT00940000161547 #19	ENSGT01030000234549.a.b #22	ENSGT00570000079216 #24	ENSGT00940000160175.b #10	ENSGT00390000011408 #9	ENSGT00960000190513	ENSGT00940000164759	ENSGT00940000158584	ENSGT00940000162006	ENSGT00940000156981	ENSGT00940000156590	ENSGT00940000157500	ENSGT00940000158949	ENSGT00390000009948.c	ENSGT00940000155780	ENSGT00940000155921	ENSGT00940000161748
Eastern brown snake	MODERN SPECIES	48		ENSPTXG00000006286	MGMT (ENSPTXG00000006288)	EBF3 (ENSPTXG00000006293)	GLRX3 (ENSPTXG00000006314)	TCERG1L (ENSPTXG00000006317)	PPP2R2D (ENSPTXG00000006320)	BNIP3 (ENSPTXG00000006323)	JAKMIP3 (ENSPTXG00000006332)	DPYSL4 (ENSPTXG00000006426)	STK32C (ENSPTXG00000006427) #25	PWWP2B (ENSPTXG00000006597) #15	ENSPTXG00000006598	INPP5A (ENSPTXG00000006599) #16	NKX6-2 (ENSPTXG00000006600) #19	ENSPTXG00000006602 #22	ENSPTXG00000006910 #24	ADGRA1 (ENSPTXG00000006920) #10	ENSPTXG00000006921 #9	ENSPTXG00000006922	DNTT (ENSPTXG00000006924)	ENSPTXG00000006930	ZNF518A (ENSPTXG00000006531)	CCNJ (ENSPTXG00000006532)	ENSPTXG00000006533	BTAF1 (ENSPTXG00000006539)	CPEB3 (ENSPTXG00000008486)	MARCHF5 (ENSPTXG00000008489)	IDE (ENSPTXG00000008490)	KIF11 (ENSPTXG00000008491)	HHEX (ENSPTXG00000008558)
Mainland tiger snake	MODERN SPECIES	34	PTPRE (ENSNSUG00000011131)	MGMT (ENSNSUG00000011250)	EBF3 (ENSNSUG00000011251)	GLRX3 (ENSNSUG00000011286)	TCERG1L (ENSNSUG00000011287)	PPP2R2D (ENSNSUG00000011293)	BNIP3 (ENSNSUG00000011970)	JAKMIP3 (ENSNSUG00000011971)	DPYSL4 (ENSNSUG00000011972)	STK32C (ENSNSUG00000011995) #25	ENSNSUG00000011996 #14	PWWP2B (ENSNSUG00000011998) #15	ENSNSUG00000011999	INPP5A (ENSNSUG00000012000) #16	NKX6-2 (ENSNSUG00000012001) #19	ENSNSUG00000012003 #22	ENSNSUG00000012272 #24	ADGRA1 (ENSNSUG00000012287) #10	ENSNSUG00000012297 #9	ENSNSUG00000012300 #9	ENSNSUG00000012301	ENSNSUG00000012306	DNTT (ENSNSUG00000012309)	ENSNSUG00000012311	ZNF518A (ENSNSUG00000012312)	CCNJ (ENSNSUG00000012314)	ENSNSUG00000012315	ENSNSUG00000012318	CPEB3 (ENSNSUG00000012320)	MARCHF5 (ENSNSUG00000012327)	IDE (ENSNSUG00000012328)
Blue-lipped sea krait	MODERN SPECIES	4048																ENSLLTG00000014897 #22	ENSLLTG00000014885 #24
Lizard	MODERN SPECIES	2	ENSACAG00000035655	ENSACAG00000042148	ENSACAG00000034797	TCERG1L (ENSACAG00000008136)	ENSACAG00000045209	PPP2R2D (ENSACAG00000008068)	BNIP3 (ENSACAG00000008046)	JAKMIP3 (ENSACAG00000007932)	DPYSL4 (ENSACAG00000007703)	STK32C (ENSACAG00000007586) #25	ENSACAG00000007576 #14	PWWP2B (ENSACAG00000007567) #15	INPP5A (ENSACAG00000005748) #16	ENSACAG00000041088	ENSACAG00000027662	ENSACAG00000005789 #22	ENSACAG00000037493	CFAP46 (ENSACAG00000005868) #24	ENSACAG00000021034 #11	ENSACAG00000043412	ENSACAG00000017438	C10orf88 (ENSACAG00000017448)	ENSACAG00000042520	ENSACAG00000017452	PSTK (ENSACAG00000017467)	IKZF5 (ENSACAG00000040076)	ACADSB (ENSACAG00000017471)	HMX3 (ENSACAG00000017490)	HMX2 (ENSACAG00000017493)	BUB3 (ENSACAG00000017494)	GPR26 (ENSACAG00000017503)
tuatara	MODERN SPECIES	562						PPP2R2D (ENSSPUG00000006262)	ENSSPUG00000006243	JAKMIP3 (ENSSPUG00000006035)	DPYSL4 (ENSSPUG00000005946)	ENSSPUG00000005910	STK32C (ENSSPUG00000005807) #25	LRRC27 (ENSSPUG00000005781) #14	PWWP2B (ENSSPUG00000005768) #15	INPP5A (ENSSPUG00000005746) #16	NKX6-2 (ENSSPUG00000005732) #19	ENSSPUG00000005719 #22
Anura	ANCESTRAL SPECIES	25	ENSGT00940000153342.a	ENSGT00940000166377	ENSGT00390000012228	ENSGT01030000234610.b.a.a	ENSGT01030000234610.b.a.b.a	ENSGT01030000234610.b.a.b.b	ENSGT00940000156696.B	ENSGT00940000157732	ENSGT00390000000909	ENSGT00940000156184	ENSGT00940000168158	ENSGT00940000163514.C	ENSGT00390000018550	ENSGT00940000155351	ENSGT00940000163896	ENSGT01030000234549.a.b #22	ENSGT00570000079216 #24	ENSGT00940000164278 #11	ENSGT00940000160175.b #10	ENSGT00390000011408 #9	ENSGT00940000165097.a.a	ENSGT00940000165097.b	ENSGT00940000165097.a.b	ENSGT00940000164759	ENSGT00940000158584	ENSGT00940000155715	ENSGT00940000162006	ENSGT00940000156981	ENSGT00940000155847	ENSGT00940000157500	ENSGT00940000158949
Frog	MODERN SPECIES	7	taf5 (ENSXETG00000011394)	atp5mk (ENSXETG00000034854)	pdcd11 (ENSXETG00000009482)	calhm2 (ENSXETG00000011395)	calhm1 (ENSXETG00000031601)	calhm3 (ENSXETG00000033589)	neurl1 (ENSXETG00000011397)	sh3pxd2a (ENSXETG00000011399)	ENSXETG00000047506	stn1 (ENSXETG00000011402)	slk (ENSXETG00000030054)	col17a1 (ENSXETG00000033563)	sfr1 (ENSXETG00000011407)	gsto2 (ENSXETG00000026602)	gsto1 (ENSXETG00000026601)	ENSXETG00000014777 #22	ENSXETG00000042597	cfap46 (ENSXETG00000014784) #24	XB5799637 (ENSXETG00000026599) #11	ENSXETG00000037556	ENSXETG00000046321	ENSXETG00000014782 #10	kndc1 (ENSXETG00000008873) #9	ventx2.1 (ENSXETG00000026798)	ventx1.1 (ENSXETG00000034053)	ventx2.2 (ENSXETG00000026796)	ventx3.1 (ENSXETG00000032888)	ventx1.2 (ENSXETG00000008879)	ventx3.2 (ENSXETG00000033622)	ENSXETG00000042979	XB5817455 [provisional:hs3st1] (ENSXETG00000008881)
Leishan spiny toad	MODERN SPECIES	9	AVPI1 (ENSLLEG00000021116)	PI4K2A (ENSLLEG00000020965)	MORN4 (ENSLLEG00000020877)	ENSLLEG00000020855	HOGA1 (ENSLLEG00000020727)	ANKRD2 (ENSLLEG00000020624)	UBTD1 (ENSLLEG00000020541)	ENSLLEG00000020496	MMS19 (ENSLLEG00000020197)	ZDHHC16 (ENSLLEG00000020093)	EXOSC1 (ENSLLEG00000020023)	SFR1 (ENSLLEG00000019900)	ENSLLEG00000019799	ENSLLEG00000019667	ENSLLEG00000019627 ##35	ENSLLEG00000019580 #22	CFAP46 (ENSLLEG00000016841) #24	ENSLLEG00000016671 #11	ADGRA1 (ENSLLEG00000016103) #10	ENSLLEG00000015945	KNDC1 (ENSLLEG00000015708) #9	ENSLLEG00000015666	ENSLLEG00000015597	ENSLLEG00000015558	ENSLLEG00000015533	ENSLLEG00000015494	ENSLLEG00000015475	ENSLLEG00000015457	ENSLLEG00000015408	DNTT (ENSLLEG00000015306)	ENSLLEG00000014433
Coelacanth	MODERN SPECIES	1176																valopb (ENSLACG00000022506) #22	NKX6-2 (ENSLACG00000007212) #19	INPP5A (ENSLACG00000007683) #16