Atherinomorphae ANCESTRAL SPECIES 16 ENSGT00730000110943.B.c ENSGT00950000182980.a.b.b.b ENSGT00940000158638 ENSGT00940000154141.B ENSGT00940000165391 ENSGT00940000164285.a ENSGT00940000155970 ENSGT00940000154537.lb ENSGT00390000016042 ENSGT00600000084626 #17 ENSGT00940000160573 #18 ENSGT00390000007203 ENSGT00940000160735 #19 ENSGT00390000015226.d #20 ENSGT00940000161547 #21 ENSGT01030000234549.a.b #22 ENSGT00570000079216 ENSGT00940000164278 #24 ENSGT00940000160175.b #25 ENSGT00390000011408 #26 ENSGT00940000165215.a #27 ENSGT00940000164759 #28 ENSGT00940000158584 ENSGT00940000177920 ENSGT00940000155715 ENSGT00940000160595.a.a ENSGT00940000156981 ENSGT00940000157500 ENSGT00940000158949 ENSGT00390000009948.c ENSGT00940000155780 Oryzias ANCESTRAL SPECIES 6 ENSGT01030000234532.A.a.a.b.j.a #11 ENSGT00940000154866.B.a #12 ENSGT00940000154200.A.b #13 ENSGT00940000156083 #14 ENSGT00940000157348 #15 ENSGT00390000012337 ENSGT00940000153577.A #16 ENSGT00510000046499.f ENSGT00940000154537.lb ENSGT00390000016042 ENSGT00600000084626 #17 ENSGT00940000160573 #18 ENSGT00940000160735 #19 ENSGT00390000015226.d #20 ENSGT00940000161547 #21 ENSGT01030000234549.a.b #22 ENSGT00570000079216 ENSGT00940000164278 #24 ENSGT00940000160175.b #25 ENSGT00390000011408 #26 ENSGT00940000165215.a #27 ENSGT00940000164759 #28 ENSGT00940000158584 ENSGT00940000177920 ENSGT00940000155715 ENSGT00940000160595.a.a ENSGT00940000156981 ENSGT00940000157500 ENSGT00940000158949 ENSGT00390000009948.c ENSGT00940000155780.k.a Oryzias_a ANCESTRAL SPECIES 4 ENSGT00390000007683 ENSGT00990000204611.d ENSGT01030000234532.A.a.a.b.j.a #11 ENSGT00940000154866.B.a #12 ENSGT00940000154200.A.b #13 ENSGT00940000156083 #14 ENSGT00940000157348 #15 ENSGT00390000012337 ENSGT00940000153577.A #16 ENSGT00940000182531 ENSGT00600000084626 #17 ENSGT00940000160573 #18 ENSGT00940000160735 #19 ENSGT00390000015226.d #20 ENSGT00940000161547 #21 ENSGT01030000234549.a.b #22 ENSGT00570000079216 ENSGT00940000164278 #24 ENSGT00940000160175.b #25 ENSGT00390000011408 #26 ENSGT00940000165215.a #27 ENSGT00940000164759 #28 ENSGT00940000158584 ENSGT00940000177920 ENSGT00940000155715 ENSGT00940000160595.a.a ENSGT00940000156981 ENSGT00940000157500 ENSGT00940000158949 ENSGT00390000009948.c ENSGT00940000155780.k.a Chinese medaka MODERN SPECIES 1329 RNF166 (ENSOSIG00000009927) #7 cyp17a1 (ENSOSIG00000009662) #8 borcs7 (ENSOSIG00000009658) #9 ENSOSIG00000009656 #10 ENSOSIG00000009426 #11 RIN2 (ENSOSIG00000009424) #12 ENSOSIG00000009423 #13 pcca (ENSOSIG00000009007) #14 PIEZO1 (ENSOSIG00000008364) #15 ENSOSIG00000008353 #16 ENSOSIG00000008352 #17 STK32C (ENSOSIG00000008351) #18 PWWP2B (ENSOSIG00000008350) #19 INPP5A (ENSOSIG00000008316) #20 nkx6.2 (ENSOSIG00000008305) #21 valopa (ENSOSIG00000008303) #22 ENSOSIG00000008301 #23 ENSOSIG00000008298 #24 ADGRA1 (ENSOSIG00000008297) #25 ENSOSIG00000008294 #26 vox (ENSOSIG00000008292) #27 ENSOSIG00000008289 #28 Japanese Medaka HdrR MODERN SPECIES 6 PIEZO1 (ENSORLG00000000402) #15 ENSORLG00000029276 CDT1 (ENSORLG00000000411) SETD4 (ENSORLG00000000434) #16 ENSORLG00000029693 ENSORLG00000027490 cbr1 (ENSORLG00000000452) mxtx1 (ENSORLG00000000457) ENSORLG00000025443 ENSORLG00000000468 #17 STK32C (ENSORLG00000000480) #18 ENSORLG00000023918 PWWP2B (ENSORLG00000000489) #19 INPP5A (ENSORLG00000000540) #20 nkx6.2 (ENSORLG00000026825) #21 valopa (ENSORLG00000000556) #22 ENSORLG00000022977 ENSORLG00000029700 ENSORLG00000000601 #24 ENSORLG00000030623 ADGRA1 (ENSORLG00000000620) #25 ENSORLG00000024250 #26 vox (ENSORLG00000000633) #27 ENSORLG00000024036 #28 dntt (ENSORLG00000000644) ENSORLG00000029694 blnk (ENSORLG00000000661) ENSORLG00000000665 ENSORLG00000000674 BTAF1 (ENSORLG00000000700) cpeb3 (ENSORLG00000000726) Oryzias_b ANCESTRAL SPECIES 49 ENSGT01030000234532.A.a.a.b.j.a #11 ENSGT00940000154866.B.a #12 ENSGT00940000154200.A.b #13 ENSGT00940000156083 #14 ENSGT00940000157348 #15 ENSGT00390000012337 ENSGT00940000153577.A #16 ENSGT00510000046499.f ENSGT00940000154537.lb ENSGT00390000016042 ENSGT00600000084626 #17 ENSGT00940000160573 #18 ENSGT00940000160735 #19 ENSGT00390000015226.d #20 ENSGT00940000161547 #21 ENSGT01030000234549.a.b #22 ENSGT00570000079216 ENSGT00940000164278 #24 ENSGT00940000160175.b #25 ENSGT00390000011408 #26 ENSGT00940000165215.a #27 ENSGT00940000164759 #28 ENSGT00940000158584 ENSGT00940000155715 ENSGT00940000160595.a.a ENSGT00940000156981 ENSGT00940000157500 ENSGT00940000158949 ENSGT00390000009948.c ENSGT00940000155780.k.a ENSGT00940000157736 Indian medaka MODERN SPECIES 27 RIN2 (ENSOMEG00000001939) #12 ENSOMEG00000001925 #13 pcca (ENSOMEG00000001912) #14 ENSOMEG00000001896 #15 ENSOMEG00000000998 #15 CDT1 (ENSOMEG00000001880) ENSOMEG00000001859 #16 cbr1 (ENSOMEG00000001847) mxtx1 (ENSOMEG00000001842) ENSOMEG00000001836 ENSOMEG00000000665 #17 STK32C (ENSOMEG00000001824) #18 PWWP2B (ENSOMEG00000001817) #19 INPP5A (ENSOMEG00000001808) #20 nkx6.2 (ENSOMEG00000001792) #21 valopa (ENSOMEG00000001785) #22 ENSOMEG00000001777 ENSOMEG00000001767 ENSOMEG00000001759 #24 ENSOMEG00000001748 #25 ENSOMEG00000001733 #26 vox (ENSOMEG00000001730) #27 ENSOMEG00000001729 #28 dntt (ENSOMEG00000001723) ENSOMEG00000001709 ENSOMEG00000001703 macroh2a2 (ENSOMEG00000001698) GBF1 (ENSOMEG00000001687) GBF1 (ENSOMEG00000001669) pitx3 (ENSOMEG00000001662) hspa12a (ENSOMEG00000001644) Javanese ricefish MODERN SPECIES 6 ENSOJAG00000015517 SLC24A3 (ENSOJAG00000015537) #11 RIN2 (ENSOJAG00000015841) #12 ENSOJAG00000015870 #13 pcca (ENSOJAG00000015899) #14 CDT1 (ENSOJAG00000018238) ENSOJAG00000018262 #16 cbr1 (ENSOJAG00000018300) mxtx1 (ENSOJAG00000018319) tmem254 (ENSOJAG00000018330) ENSOJAG00000018344 #17 STK32C (ENSOJAG00000018392) #18 PWWP2B (ENSOJAG00000018710) #19 INPP5A (ENSOJAG00000018734) #20 nkx6.2 (ENSOJAG00000018968) #21 valopa (ENSOJAG00000018981) #22 ENSOJAG00000019031 ENSOJAG00000005117 ENSOJAG00000005135 #24 ADGRA1 (ENSOJAG00000005149) #25 ENSOJAG00000005165 #26 vox (ENSOJAG00000005173) #27 ENSOJAG00000005184 #28 dntt (ENSOJAG00000005201) blnk (ENSOJAG00000005236) ENSOJAG00000005271 CCNJ (ENSOJAG00000005276) cpeb3 (ENSOJAG00000006321) marchf5 (ENSOJAG00000006507) ide (ENSOJAG00000006576) cdc42ep3 (ENSOJAG00000007125) Cyprinodontiformes ANCESTRAL SPECIES 17 ENSGT00730000110943.B.c ENSGT00950000182980.a.b.b.b ENSGT00940000158638 ENSGT00940000154141.B ENSGT00940000165391 ENSGT00940000164285.a ENSGT00940000155970 ENSGT00940000154537.lb ENSGT00390000016042 ENSGT00600000084626 #17 ENSGT00940000160573 #18 ENSGT00390000007203 ENSGT00940000160735 #19 ENSGT00390000015226.d #20 ENSGT00940000161547 #21 ENSGT01030000234549.a.b #22 ENSGT00570000079216 ENSGT00940000164278 #24 ENSGT00940000160175.b #25 ENSGT00390000011408 #26 ENSGT00940000165215.a #27 ENSGT00940000164759 #28 ENSGT00940000158584 ENSGT00940000177920 ENSGT00940000155715 ENSGT00940000160595.a.a ENSGT00940000156981 ENSGT00940000157500 ENSGT00940000158949 ENSGT00390000009948.c ENSGT00940000155780 Cyprinodontoidei ANCESTRAL SPECIES 14 ENSGT00730000110943.B.c ENSGT00950000182980.a.b.b.b ENSGT00940000158638 ENSGT00940000154141.B ENSGT00940000165391 ENSGT00940000164285.a ENSGT00940000155970 ENSGT00940000154537.lb ENSGT00390000016042 ENSGT00600000084626 #17 ENSGT00940000160573 #18 ENSGT00390000007203 ENSGT00940000160735 #19 ENSGT00390000015226.d #20 ENSGT00940000161547 #21 ENSGT01030000234549.a.b #22 ENSGT00570000079216 ENSGT00940000164278 #24 ENSGT00940000160175.b #25 ENSGT00390000011408 #26 ENSGT00940000165215.a #27 ENSGT00940000164759 #28 ENSGT00940000158584 ENSGT00940000177920 ENSGT00940000155715 ENSGT00940000160595.a.a ENSGT00940000156981 ENSGT00940000157500 ENSGT00940000158949 ENSGT00390000009948.c ENSGT00940000155780 NAME_4 ANCESTRAL SPECIES 58 ENSGT00730000110943.B.c ENSGT00950000182980.a.b.b.b ENSGT00940000158638 ENSGT00940000154141.B ENSGT00940000165391 ENSGT00940000164285.a ENSGT00940000155970 ENSGT00940000154537.lb ENSGT00390000016042 ENSGT00600000084626 #17 ENSGT00940000160573 #18 ENSGT00390000007203 ENSGT00940000160735 #19 ENSGT00390000015226.d #20 ENSGT00940000161547 #21 ENSGT01030000234549.a.b #22 ENSGT00570000079216 ENSGT00940000164278 #24 ENSGT00940000160175.b #25 ENSGT00390000011408 #26 ENSGT00940000165215.a #27 ENSGT00940000164759 #28 ENSGT00940000158584 ENSGT00940000177920 ENSGT00940000156981 ENSGT00940000157500 ENSGT00940000158949 ENSGT00390000009948.c ENSGT00940000155780 ENSGT00390000000747 ENSGT01100000263502.A.a.b Sheepshead minnow MODERN SPECIES 520 INPP5A (ENSCVAG00000008169) #20 nkx6.2 (ENSCVAG00000008201) #21 valopa (ENSCVAG00000008251) #22 jag1b (ENSCVAG00000008444) BTBD3 (ENSCVAG00000000242) sptlc3 (ENSCVAG00000008555) ism1 (ENSCVAG00000008572) tasp1 (ENSCVAG00000008744) Mummichog MODERN SPECIES 2195 ENSFHEG00000020652 calm2a (ENSFHEG00000020657) TTC7A (ENSFHEG00000020687) mcfd2 (ENSFHEG00000020700) ENSFHEG00000020714 socs5b (ENSFHEG00000020721) rhoq (ENSFHEG00000020742) mxtx1 (ENSFHEG00000020765) ENSFHEG00000020772 ENSFHEG00000020811 #17 STK32C (ENSFHEG00000020845) #18 ENSFHEG00000020866 PWWP2B (ENSFHEG00000020873) #19 INPP5A (ENSFHEG00000000519) #20 nkx6.2 (ENSFHEG00000020909) #21 valopa (ENSFHEG00000020929) #22 ENSFHEG00000020944 ENSFHEG00000020954 ENSFHEG00000020960 #24 ADGRA1 (ENSFHEG00000021011) #25 ENSFHEG00000021021 #26 vox (ENSFHEG00000021027) #27 ENSFHEG00000021033 #28 dntt (ENSFHEG00000021138) blnk (ENSFHEG00000021156) ENSFHEG00000021174 BTAF1 (ENSFHEG00000021288) cpeb3 (ENSFHEG00000021371) marchf5 (ENSFHEG00000021388) ide (ENSFHEG00000021532) kmo (ENSFHEG00000021606) Poeciliinae ANCESTRAL SPECIES 16 ENSGT00730000110943.B.c ENSGT00950000182980.a.b.b.b ENSGT00940000158638 ENSGT00940000154141.B ENSGT00940000165391 ENSGT00940000164285.a ENSGT00940000155970 ENSGT00940000154537.lb ENSGT00390000016042 ENSGT00600000084626 #17 ENSGT00940000160573 #18 ENSGT00390000007203 ENSGT00940000160735 #19 ENSGT00390000015226.d #20 ENSGT00940000161547 #21 ENSGT01030000234549.a.b #22 ENSGT00570000079216 ENSGT00940000164278 #24 ENSGT00940000160175.b #25 ENSGT00390000011408 #26 ENSGT00940000165215.a #27 ENSGT00940000164759 #28 ENSGT00940000158584 ENSGT00940000177920 ENSGT00940000155715 ENSGT00940000160595.a.a ENSGT00940000156981 ENSGT00940000157500 ENSGT00940000158949 ENSGT00390000009948.c ENSGT00940000155780 Poecilia ANCESTRAL SPECIES 11 ENSGT00730000110943.B.c ENSGT00950000182980.a.b.b.b ENSGT00940000158638 ENSGT00940000154141.B ENSGT00940000165391 ENSGT00940000164285.a ENSGT00940000155970 ENSGT00940000154537.lb ENSGT00390000016042 ENSGT00600000084626 #17 ENSGT00940000160573 #18 ENSGT00390000007203 ENSGT00940000160735 #19 ENSGT00390000015226.d #20 ENSGT00940000161547 #21 ENSGT01030000234549.a.b #22 ENSGT00570000079216 ENSGT00940000164278 #24 ENSGT00940000160175.b #25 ENSGT00390000011408 #26 ENSGT00940000165215.a #27 ENSGT00940000164759 #28 ENSGT00940000158584 ENSGT00940000177920 ENSGT00940000155715 ENSGT00940000160595.a.a ENSGT00940000156981 ENSGT00940000157500 ENSGT00940000158949 ENSGT00390000009948.c ENSGT00940000155780 NAME_6 ANCESTRAL SPECIES 203 ENSGT00730000110943.B.c ENSGT00950000182980.a.b.b.b ENSGT00940000158638 ENSGT00940000154141.B ENSGT00940000165391 ENSGT00940000164285.a ENSGT00940000155970 ENSGT00940000154537.lb ENSGT00390000016042 ENSGT00600000084626 #17 ENSGT00940000160573 #18 ENSGT00390000007203 ENSGT00940000160735 #19 ENSGT00390000015226.d #20 ENSGT00940000161547 #21 ENSGT01030000234549.a.b #22 ENSGT00570000079216 ENSGT00940000164278 #24 ENSGT00940000160175.b #25 ENSGT00390000011408 #26 ENSGT00940000165215.a #27 ENSGT00940000164759 #28 Amazon molly MODERN SPECIES 449 rhoq (ENSPFOG00000004834) ENSPFOG00000004918 tmem254 (ENSPFOG00000004937) ENSPFOG00000005014 #17 ENSPFOG00000005146 STK32C (ENSPFOG00000005239) #18 ENSPFOG00000024408 PWWP2B (ENSPFOG00000005628) #19 INPP5A (ENSPFOG00000005662) #20 nkx6.2 (ENSPFOG00000005993) #21 INPP5A (ENSPFOG00000006039) #20 nkx6.2 (ENSPFOG00000006051) #21 valopa (ENSPFOG00000006068) #22 ENSPFOG00000022798 ENSPFOG00000006137 ENSPFOG00000006396 #24 ENSPFOG00000006646 #25 KNDC1 (ENSPFOG00000007111) #26 vox (ENSPFOG00000007396) #27 ENSPFOG00000020031 #28 Sailfin molly MODERN SPECIES 2785 valopa (ENSPLAG00000007621) #22 Guppy MODERN SPECIES 445 ENSPREG00000010681 calm2a (ENSPREG00000010724) TTC7A (ENSPREG00000010741) ENSPREG00000010761 mcfd2 (ENSPREG00000010773) ENSPREG00000010783 socs5b (ENSPREG00000010792) rhoq (ENSPREG00000010809) ENSPREG00000010831 tmem254 (ENSPREG00000010846) ENSPREG00000010867 #17 STK32C (ENSPREG00000010915) #18 ENSPREG00000010951 PWWP2B (ENSPREG00000010970) #19 nkx6.2 (ENSPREG00000010999) #21 valopa (ENSPREG00000011010) #22 ENSPREG00000011030 ENSPREG00000011069 ENSPREG00000011098 ENSPREG00000011122 slc22a15 (ENSPREG00000011151) ENSPREG00000011177 kif11 (ENSPREG00000011297) EGR2 (ENSPREG00000011993) adob (ENSPREG00000012002) foxg1d (ENSPREG00000012020) slc30a6 (ENSPREG00000012044) sult6b1 (ENSPREG00000012075) ENSPREG00000012118 EML6 (ENSPREG00000012147) ENSPREG00000012218 Platyfish MODERN SPECIES 14 ENSXMAG00000007473 calm2a (ENSXMAG00000007477) TTC7A (ENSXMAG00000007479) mcfd2 (ENSXMAG00000007510) ENSXMAG00000007514 socs5b (ENSXMAG00000019827) rhoq (ENSXMAG00000007515) mxtx1 (ENSXMAG00000007518) ENSXMAG00000007521 ENSXMAG00000007525 #17 STK32C (ENSXMAG00000007528) #18 ENSXMAG00000028891 PWWP2B (ENSXMAG00000007540) #19 INPP5A (ENSXMAG00000007542) #20 nkx6.2 (ENSXMAG00000007554) #21 valopa (ENSXMAG00000029737) #22 ENSXMAG00000007566 ENSXMAG00000017068 #24 ADGRA1 (ENSXMAG00000007574) #25 KNDC1 (ENSXMAG00000007589) #26 vox (ENSXMAG00000007597) #27 ENSXMAG00000019828 #28 dntt (ENSXMAG00000007601) blnk (ENSXMAG00000025725) CCNJ (ENSXMAG00000007625) ENSXMAG00000025492 cpeb3 (ENSXMAG00000007652) marchf5 (ENSXMAG00000007675) ENSXMAG00000009019 ENSXMAG00000009048 EML4 (ENSXMAG00000009050) Aplocheiloidei ANCESTRAL SPECIES 230 ENSGT00390000015226.d #20 ENSGT00940000161547 #21 ENSGT01030000234549.a.b #22 ENSGT00570000079216 ENSGT00940000164278 #24 ENSGT00940000160175.b #25 ENSGT00390000011408 #26 ENSGT00940000165215.a #27 ENSGT00940000164759 #28 ENSGT00940000158584 Mangrove rivulus MODERN SPECIES 222 INPP5A (ENSKMAG00000015822) #20 nkx6.2 (ENSKMAG00000015807) #21 valopa (ENSKMAG00000015793) #22 ENSKMAG00000015766 ENSKMAG00000015745 #24 ADGRA1 (ENSKMAG00000015735) #25 KNDC1 (ENSKMAG00000015708) #26 vox (ENSKMAG00000015693) #27 ENSKMAG00000015689 #28 dntt (ENSKMAG00000015664) Turquoise killifish MODERN SPECIES 1012 valopa (ENSNFUG00015011975) #22