Euarchontoglires	ANCESTRAL SPECIES	2	ENSGT00940000156903 #7	ENSGT00390000003715 #8	ENSGT00940000156745 #9	ENSGT00940000166505 #10	ENSGT00940000157185 #11	ENSGT00390000004493 #12	ENSGT00940000154019.a #13	ENSGT00390000006591 #14	ENSGT00940000160473 #15	ENSGT00940000156760 #16	ENSGT00390000000970.b #17	ENSGT00940000155368 #18	ENSGT00940000164154	ENSGT00940000162647 #20	ENSGT00940000159135 #21	ENSGT01100000263515.a.b.a.a #22	ENSGT00390000018660 #23	ENSGT00940000163939	ENSGT00940000154287.b #25	ENSGT00730000111251	ENSGT00390000005023.b	ENSGT00550000074911	ENSGT00530000063813.b	ENSGT00530000063813.a	ENSGT00390000011700	ENSGT01030000234621.C.b	ENSGT00390000000847	ENSGT00390000011127	ENSGT00390000016906	ENSGT00720000110080	ENSGT00390000005823
Primates	ANCESTRAL SPECIES	1	ENSGT00940000156903 #7	ENSGT00390000003715 #8	ENSGT00940000156745 #9	ENSGT00940000166505 #10	ENSGT00940000157185 #11	ENSGT00390000004493 #12	ENSGT00940000154019.a #13	ENSGT00390000006591 #14	ENSGT00940000160473 #15	ENSGT00940000156760 #16	ENSGT00390000000970.b #17	ENSGT00940000155368 #18	ENSGT00940000164154	ENSGT00940000162647 #20	ENSGT00940000159135 #21	ENSGT01100000263515.a.b.a.a #22	ENSGT00390000018660 #23	ENSGT00940000163939	ENSGT00940000154287.b #25	ENSGT00730000111251	ENSGT00390000005023.b	ENSGT00550000074911	ENSGT00530000063813.b	ENSGT00530000063813.a	ENSGT00390000011700	ENSGT01030000234621.C.b	ENSGT00390000000847	ENSGT00390000011127	ENSGT00390000016906	ENSGT00390000005823	ENSGT00440000033499
Strepsirrhini	ANCESTRAL SPECIES	1	ENSGT01030000234571.a.a	ENSGT00940000156903 #7	ENSGT00390000003715 #8	ENSGT00940000156745 #9	ENSGT00940000166505 #10	ENSGT00940000157185 #11	ENSGT00390000004493 #12	ENSGT00940000154019.a #13	ENSGT00390000006591 #14	ENSGT00940000160473 #15	ENSGT00940000156760 #16	ENSGT00390000000970.b #17	ENSGT00940000155368 #18	ENSGT00940000162647 #20	ENSGT00940000159135 #21	ENSGT01100000263515.a.b.a.a #22	ENSGT00390000018660 #23	ENSGT00940000154287.b #25	ENSGT00730000111251	ENSGT00390000005023.b	ENSGT00530000063813.b	ENSGT00550000074911	ENSGT00530000063813.a	ENSGT00390000011700	ENSGT01030000234621.C.b	ENSGT00390000000847	ENSGT00390000011127	ENSGT00390000016906	ENSGT00390000005823	ENSGT00440000033499	ENSGT00900000141094
Lemuriformes	ANCESTRAL SPECIES	30	ENSGT01030000234571.a.a	ENSGT00940000156903 #7	ENSGT00390000003715 #8	ENSGT00940000156745 #9	ENSGT00940000166505 #10	ENSGT00940000157185 #11	ENSGT00390000004493 #12	ENSGT00940000154019.a #13	ENSGT00390000006591 #14	ENSGT00940000160473 #15	ENSGT00940000156760 #16	ENSGT00390000000970.b #17	ENSGT00940000155368 #18	ENSGT00940000162647 #20	ENSGT00940000159135 #21	ENSGT01100000263515.a.b.a.a #22	ENSGT00390000018660 #23	ENSGT00940000154287.b #25	ENSGT00730000111251	ENSGT00390000005023.b	ENSGT00550000074911	ENSGT00530000063813.b	ENSGT00530000063813.a	ENSGT00390000011700	ENSGT01030000234621.C.b	ENSGT00390000000847	ENSGT00390000011127	ENSGT00390000016906	ENSGT00390000005823	ENSGT00440000033499	ENSGT00900000141094
Lemuriformes_a	ANCESTRAL SPECIES	77	ENSGT01030000234571.a.a	ENSGT00940000156903 #7	ENSGT00390000003715 #8	ENSGT00940000156745 #9	ENSGT00940000166505 #10	ENSGT00940000157185 #11	ENSGT00390000004493 #12	ENSGT00940000154019.a #13	ENSGT00390000006591 #14	ENSGT00940000160473 #15	ENSGT00940000156760 #16	ENSGT00390000000970.b #17	ENSGT00940000155368 #18	ENSGT00940000162647 #20	ENSGT00940000159135 #21	ENSGT01100000263515.a.b.a.a #22	ENSGT00390000018660 #23	ENSGT00940000154287.b #25	ENSGT00730000111251	ENSGT00390000005023.b	ENSGT00550000074911	ENSGT00530000063813.b	ENSGT00530000063813.a	ENSGT00390000011700	ENSGT01030000234621.C.b	ENSGT00390000000847	ENSGT00390000011127	ENSGT00390000016906
Greater bamboo lemur	MODERN SPECIES	448	DHX36 (ENSPSMG00000003457) #7	GPR149 (ENSPSMG00000003410) #8	MME (ENSPSMG00000003300) #9	STRIT1 (ENSPSMG00000003191) #10	PLCH1 (ENSPSMG00000003152) #11	C3orf33 (ENSPSMG00000003083) #12	ENSPSMG00000003046 #13	GMPS (ENSPSMG00000003004) #14	ENSPSMG00000002894 #15	KCNAB1 (ENSPSMG00000002464) #16	SSR3 (ENSPSMG00000002232) #17	TIPARP (ENSPSMG00000002213) #18	ENSPSMG00000002207 #19	LEKR1 (ENSPSMG00000002201) #20	CCNL1 (ENSPSMG00000002156) #21	PTX3 (ENSPSMG00000002124) #22	VEPH1 (ENSPSMG00000002055) #23	ENSPSMG00000002005 #24	SHOX2 (ENSPSMG00000001995) #25
Coquerels sifaka	MODERN SPECIES	274	ENSPCOG00000022566	ARHGEF26 (ENSPCOG00000012536)	ENSPCOG00000011695 #7	GPR149 (ENSPCOG00000027399) #8	MME (ENSPCOG00000013543) #9	STRIT1 (ENSPCOG00000015379) #10	PLCH1 (ENSPCOG00000028591) #11	C3orf33 (ENSPCOG00000007724) #12	SLC33A1 (ENSPCOG00000021978) #13	GMPS (ENSPCOG00000024460) #14	KCNAB1 (ENSPCOG00000013343) #16	SSR3 (ENSPCOG00000017371) #17	TIPARP (ENSPCOG00000018471) #18	LEKR1 (ENSPCOG00000008154) #20	CCNL1 (ENSPCOG00000015763) #21	PTX3 (ENSPCOG00000024857) #22	VEPH1 (ENSPCOG00000018922) #23	ENSPCOG00000001436	SHOX2 (ENSPCOG00000028731) #25	RSRC1 (ENSPCOG00000024048)	MLF1 (ENSPCOG00000024606)	LXN (ENSPCOG00000027480)	GFM1 (ENSPCOG00000022259)	RARRES1 (ENSPCOG00000028694)	MFSD1 (ENSPCOG00000017381)	IQCJ (ENSPCOG00000015167)	ENSPCOG00000002157	IL12A (ENSPCOG00000019947)
Mouse lemur	MODERN SPECIES		MECOM (ENSMICG00000049200)	GOLIM4 (ENSMICG00000048403)	ENSMICG00000048463	SERPINI1 (ENSMICG00000049293)	ENSMICG00000049445	WDR49 (ENSMICG00000048888)	SERPINI2 (ENSMICG00000049123)	ZBBX (ENSMICG00000049374)	ENSMICG00000049058	BCHE (ENSMICG00000049075)	SLITRK3 (ENSMICG00000049548)	SI (ENSMICG00000049323)	ENSMICG00000048943	ENSMICG00000048227 #20	CCNL1 (ENSMICG00000049517) #21	PTX3 (ENSMICG00000049341) #22	VEPH1 (ENSMICG00000049487) #23	ENSMICG00000049190	ENSMICG00000049353	ENSMICG00000049516	SHOX2 (ENSMICG00000049132) #25	ENSMICG00000049450	ENSMICG00000048785	MLF1 (ENSMICG00000048928)	LXN (ENSMICG00000049388)	GFM1 (ENSMICG00000049086)	RARRES1 (ENSMICG00000049120)	MFSD1 (ENSMICG00000049472)	IQCJ (ENSMICG00000049562)	ENSMICG00000049157	IL12A (ENSMICG00000049316)
Bushbaby	MODERN SPECIES	191	ARHGEF26 (ENSOGAG00000011252)	DHX36 (ENSOGAG00000011256) #7	GPR149 (ENSOGAG00000011263) #8	MME (ENSOGAG00000010918) #9	PLCH1 (ENSOGAG00000031120) #11	C3orf33 (ENSOGAG00000014996) #12	SLC33A1 (ENSOGAG00000008518) #13	GMPS (ENSOGAG00000008523) #14	ENSOGAG00000028827 #15	KCNAB1 (ENSOGAG00000010587) #16	SSR3 (ENSOGAG00000010589) #17	TIPARP (ENSOGAG00000003455) #18	ENSOGAG00000016012 #20	CCNL1 (ENSOGAG00000011592) #21	VEPH1 (ENSOGAG00000007526) #23	PTX3 (ENSOGAG00000007529) #22	SHOX2 (ENSOGAG00000008288) #25	ENSOGAG00000008290	ENSOGAG00000025716	MLF1 (ENSOGAG00000008294)	GFM1 (ENSOGAG00000008298)	RARRES1 (ENSOGAG00000008313)	MFSD1 (ENSOGAG00000014711)	ENSOGAG00000026335	ENSOGAG00000009312	IL12A (ENSOGAG00000013000)	ENSOGAG00000025939	IFT80 (ENSOGAG00000010032)	SMC4 (ENSOGAG00000010034)	ENSOGAG00000026112	GRID2 (ENSOGAG00000004937)
Haplorrhini	ANCESTRAL SPECIES	5	ENSGT00940000156903 #7	ENSGT00390000003715 #8	ENSGT00940000156745 #9	ENSGT00940000166505 #10	ENSGT00940000157185 #11	ENSGT00390000004493 #12	ENSGT00940000154019.a #13	ENSGT00390000006591 #14	ENSGT00940000160473 #15	ENSGT00940000156760 #16	ENSGT00390000000970.b #17	ENSGT00940000155368 #18	ENSGT00940000164154	ENSGT00940000162647 #20	ENSGT00940000159135 #21	ENSGT01100000263515.a.b.a.a #22	ENSGT00390000018660 #23	ENSGT00940000163939	ENSGT00940000154287.b #25	ENSGT00730000111251	ENSGT00390000005023.b	ENSGT00550000074911	ENSGT00530000063813.b	ENSGT00530000063813.a	ENSGT00390000011700	ENSGT01030000234621.C.b	ENSGT00390000000847	ENSGT00390000011127	ENSGT00390000016906	ENSGT00390000005823	ENSGT00440000033499
Simiiformes	ANCESTRAL SPECIES	1	ENSGT01030000234571.a.a	ENSGT00940000156903 #7	ENSGT00390000003715 #8	ENSGT00940000156745 #9	ENSGT00940000166505 #10	ENSGT00940000157185 #11	ENSGT00390000004493 #12	ENSGT00940000154019.a #13	ENSGT00390000006591 #14	ENSGT00940000156760 #16	ENSGT00390000000970.b #17	ENSGT00940000155368 #18	ENSGT00940000164154	ENSGT00940000162647 #20	ENSGT00940000159135 #21	ENSGT01100000263515.a.b.a.a #22	ENSGT00390000018660 #23	ENSGT00940000163939	ENSGT00940000154287.b #25	ENSGT00730000111251	ENSGT00390000005023.b	ENSGT00550000074911	ENSGT00530000063813.b	ENSGT00530000063813.a	ENSGT00390000011700	ENSGT01030000234621.C.b	ENSGT00390000000847	ENSGT00390000011127	ENSGT00390000016906	ENSGT00390000005823	ENSGT00440000033499
Catarrhini	ANCESTRAL SPECIES	2	ENSGT00940000156745 #9	ENSGT00940000166505 #10	ENSGT00940000153773.a.b.a.a.b	ENSGT00940000157185 #11	ENSGT00390000004493 #12	ENSGT00940000154019.a #13	ENSGT00390000006591 #14	ENSGT00390000017288.d	ENSGT00940000155058.e.b	ENSGT00940000156760 #16	ENSGT00390000000970.b #17	ENSGT00940000155368 #18	ENSGT00940000164154	ENSGT00940000162647 #20	ENSGT00940000159135 #21	ENSGT01100000263515.a.b.a.a #22	ENSGT00390000018660 #23	ENSGT00940000163939	ENSGT00940000154287.b #25	ENSGT00730000111251	ENSGT00390000005023.b	ENSGT00550000074911	ENSGT00530000063813.b	ENSGT00530000063813.a	ENSGT00390000011700	ENSGT00390000000847	ENSGT00390000011127	ENSGT00390000016906	ENSGT00390000005823	ENSGT00440000033499	ENSGT00900000141094
Hominoidea	ANCESTRAL SPECIES	2	ENSGT00940000155901.a.a.b	ENSGT00940000156745 #9	ENSGT00940000166505 #10	ENSGT00940000153773.a.b.a.a.b	ENSGT00940000157185 #11	ENSGT00390000004493 #12	ENSGT00940000154019.a #13	ENSGT00390000006591 #14	ENSGT00390000017288.d	ENSGT00940000155058.e.b	ENSGT00940000156760 #16	ENSGT00390000000970.b #17	ENSGT00940000155368 #18	ENSGT00940000162647 #20	ENSGT00940000159135 #21	ENSGT01100000263515.a.b.a.a #22	ENSGT00390000018660 #23	ENSGT00940000163939	ENSGT00940000154287.b #25	ENSGT00730000111251	ENSGT00390000005023.b	ENSGT00550000074911	ENSGT00530000063813.b	ENSGT00530000063813.a	ENSGT00390000011700	ENSGT00390000000847	ENSGT00390000011127	ENSGT00390000016906	ENSGT00390000005823	ENSGT00440000033499	ENSGT00900000141094
Hominidae	ANCESTRAL SPECIES	2	ENSGT00940000156903 #7	ENSGT00390000003715 #8	ENSGT00940000155901.a.a.b	ENSGT00940000156745 #9	ENSGT00940000166505 #10	ENSGT00940000153773.a.b.a.a.b	ENSGT00940000157185 #11	ENSGT00390000004493 #12	ENSGT00940000154019.a #13	ENSGT00390000006591 #14	ENSGT00940000156760 #16	ENSGT00390000000970.b #17	ENSGT00940000155368 #18	ENSGT00940000162647 #20	ENSGT00940000159135 #21	ENSGT01100000263515.a.b.a.a #22	ENSGT00390000018660 #23	ENSGT00940000163939	ENSGT00940000154287.b #25	ENSGT00730000111251	ENSGT00390000005023.b	ENSGT00550000074911	ENSGT00530000063813.b	ENSGT00530000063813.a	ENSGT00390000011700	ENSGT00390000000847	ENSGT00390000011127	ENSGT00390000016906	ENSGT00390000005823	ENSGT00440000033499	ENSGT00900000141094
Homo/Pan/Gorilla group	ANCESTRAL SPECIES	2	ENSGT00940000156903 #7	ENSGT00390000003715 #8	ENSGT00940000155901.a.a.b	ENSGT00940000156745 #9	ENSGT00940000166505 #10	ENSGT00940000153773.a.b.a.a.b	ENSGT00940000157185 #11	ENSGT00390000004493 #12	ENSGT00940000154019.a #13	ENSGT00390000006591 #14	ENSGT00940000156760 #16	ENSGT00390000000970.b #17	ENSGT00940000155368 #18	ENSGT00940000162647 #20	ENSGT00940000159135 #21	ENSGT01100000263515.a.b.a.a #22	ENSGT00390000018660 #23	ENSGT00940000163939	ENSGT00940000154287.b #25	ENSGT00730000111251	ENSGT00390000005023.b	ENSGT00550000074911	ENSGT00530000063813.b	ENSGT00530000063813.a	ENSGT00390000011700	ENSGT00390000000847	ENSGT00390000011127	ENSGT00390000016906	ENSGT00390000005823	ENSGT00440000033499	ENSGT00900000141094
Homo/Pan group	ANCESTRAL SPECIES	3	ENSGT01030000234571.a.a	ENSGT00940000156903 #7	ENSGT00390000003715 #8	ENSGT00940000156745 #9	ENSGT00940000166505 #10	ENSGT00940000153773.a.b.a.a.b	ENSGT00940000157185 #11	ENSGT00390000004493 #12	ENSGT00940000154019.a #13	ENSGT00390000006591 #14	ENSGT00940000156760 #16	ENSGT00390000000970.b #17	ENSGT00940000155368 #18	ENSGT00940000162647 #20	ENSGT00940000159135 #21	ENSGT01100000263515.a.b.a.a #22	ENSGT00390000018660 #23	ENSGT00940000163939	ENSGT00940000154287.b #25	ENSGT00730000111251	ENSGT00390000005023.b	ENSGT00550000074911	ENSGT00530000063813.b	ENSGT00530000063813.a	ENSGT00390000011700	ENSGT00390000000847	ENSGT00390000011127	ENSGT00390000016906	ENSGT00390000005823	ENSGT00440000033499	ENSGT00900000141094
Pan	ANCESTRAL SPECIES	2	ENSGT00940000166505 #10	ENSGT00940000153773.a.b.a.a.b	ENSGT00940000157185 #11	ENSGT00390000004493 #12	ENSGT00940000154019.a #13	ENSGT00390000006591 #14	ENSGT00940000154891.g.a.b.a.a	ENSGT00390000008647.e.a.a.a.b.a.a	ENSGT00390000017288.d	ENSGT00940000156760 #16	ENSGT00390000000970.b #17	ENSGT00940000155368 #18	ENSGT00940000154281.m.b.a.a.b.a	ENSGT00940000162647 #20	ENSGT00940000159135 #21	ENSGT01100000263515.a.b.a.a #22	ENSGT00390000018660 #23	ENSGT00940000163939	ENSGT00940000154287.b #25	ENSGT00730000111251	ENSGT00390000005023.b	ENSGT00550000074911	ENSGT00530000063813.b	ENSGT00530000063813.a	ENSGT00390000011700	ENSGT00390000000847	ENSGT00390000011127	ENSGT00390000016906	ENSGT00390000005823	ENSGT00440000033499	ENSGT00900000141094
Chimpanzee	MODERN SPECIES	16	PLCH1 (ENSPTRG00000015551) #11	C3H3orf33 (ENSPTRG00000015553) #12	SLC33A1 (ENSPTRG00000015554) #13	GMPS (ENSPTRG00000015555) #14	ENSPTRG00000032585	ENSPTRG00000041304	ENSPTRG00000052355	ENSPTRG00000051749	KCNAB1 (ENSPTRG00000044809) #16	SSR3 (ENSPTRG00000048398) #17	TIPARP (ENSPTRG00000015561) #18	ENSPTRG00000040050	LEKR1 (ENSPTRG00000024220) #20	CCNL1 (ENSPTRG00000015563) #21	VEPH1 (ENSPTRG00000022665) #23	PTX3 (ENSPTRG00000015565) #22	SLC66A1L (ENSPTRG00000015566)	SHOX2 (ENSPTRG00000023041) #25	RSRC1 (ENSPTRG00000043498)	MLF1 (ENSPTRG00000015569)	GFM1 (ENSPTRG00000015570)	LXN (ENSPTRG00000015571)	RARRES1 (ENSPTRG00000015572)	MFSD1 (ENSPTRG00000022830)	IQCJ (ENSPTRG00000033877)	SCHIP1 (ENSPTRG00000015575)	IL12A (ENSPTRG00000015576)	ENSPTRG00000005970	C3H3orf80 (ENSPTRG00000051547)	IFT80 (ENSPTRG00000015578)	SMC4 (ENSPTRG00000015579)
Bonobo	MODERN SPECIES	16	ENSPPAG00000037955	PLCH1 (ENSPPAG00000015015) #11	C3orf33 (ENSPPAG00000040302) #12	SLC33A1 (ENSPPAG00000028834) #13	GMPS (ENSPPAG00000042787) #14	ENSPPAG00000031281	ENSPPAG00000008889	ENSPPAG00000031413	KCNAB1 (ENSPPAG00000030046) #16	SSR3 (ENSPPAG00000034664) #17	TIPARP (ENSPPAG00000029528) #18	ENSPPAG00000033599	LEKR1 (ENSPPAG00000028869) #20	CCNL1 (ENSPPAG00000033713) #21	VEPH1 (ENSPPAG00000034788) #23	PTX3 (ENSPPAG00000035181) #22	SHOX2 (ENSPPAG00000022372) #25	RSRC1 (ENSPPAG00000034990)	MLF1 (ENSPPAG00000027183)	GFM1 (ENSPPAG00000033881)	LXN (ENSPPAG00000040496)	ENSPPAG00000043634	MFSD1 (ENSPPAG00000028522)	ENSPPAG00000044100	ENSPPAG00000030192	IL12A (ENSPPAG00000038366)	C3orf80 (ENSPPAG00000028260)	IFT80 (ENSPPAG00000041744)	SMC4 (ENSPPAG00000042464)	ENSPPAG00000030473	KPNA4 (ENSPPAG00000003969)
Human	MODERN SPECIES	15	ARHGEF26 (ENSG00000114790)	DHX36 (ENSG00000174953) #7	GPR149 (ENSG00000174948) #8	MME (ENSG00000196549) #9	STRIT1 (ENSG00000240045) #10	PLCH1 (ENSG00000114805) #11	C3orf33 (ENSG00000174928) #12	SLC33A1 (ENSG00000169359) #13	GMPS (ENSG00000163655) #14	KCNAB1 (ENSG00000169282) #16	SSR3 (ENSG00000114850) #17	TIPARP (ENSG00000163659) #18	LEKR1 (ENSG00000197980) #20	CCNL1 (ENSG00000163660) #21	VEPH1 (ENSG00000197415) #23	PTX3 (ENSG00000163661) #22	SHOX2 (ENSG00000168779) #25	RSRC1 (ENSG00000174891)	MLF1 (ENSG00000178053)	GFM1 (ENSG00000168827)	LXN (ENSG00000079257)	RARRES1 (ENSG00000118849)	MFSD1 (ENSG00000118855)	IQCJ-SCHIP1 (ENSG00000283154)	IQCJ (ENSG00000214216)	SCHIP1 (ENSG00000151967)	IL12A (ENSG00000168811)	C3orf80 (ENSG00000180044)	IFT80 (ENSG00000068885)	SMC4 (ENSG00000113810)	TRIM59 (ENSG00000213186)
Gorilla	MODERN SPECIES	16	PLCH1 (ENSGGOG00000009552) #11	ENSGGOG00000039947	ENSGGOG00000038553	C3orf33 (ENSGGOG00000024967) #12	SLC33A1 (ENSGGOG00000013029) #13	GMPS (ENSGGOG00000017082) #14	ENSGGOG00000041405	ENSGGOG00000024916	KCNAB1 (ENSGGOG00000007488) #16	ENSGGOG00000023817	SSR3 (ENSGGOG00000024038) #17	TIPARP (ENSGGOG00000026270) #18	LEKR1 (ENSGGOG00000025297) #20	CCNL1 (ENSGGOG00000006249) #21	VEPH1 (ENSGGOG00000034894) #23	PTX3 (ENSGGOG00000015338) #22	ENSGGOG00000028322	SHOX2 (ENSGGOG00000011637) #25	RSRC1 (ENSGGOG00000042322)	MLF1 (ENSGGOG00000022629)	GFM1 (ENSGGOG00000003085)	LXN (ENSGGOG00000003092)	RARRES1 (ENSGGOG00000011629)	MFSD1 (ENSGGOG00000024126)	ENSGGOG00000003898	IQCJ-SCHIP1 (ENSGGOG00000009987)	IL12A (ENSGGOG00000006828)	ENSGGOG00000037834	C3orf80 (ENSGGOG00000043723)	IFT80 (ENSGGOG00000039200)	SMC4 (ENSGGOG00000013735)
Orangutan	MODERN SPECIES	16	DHX36 (ENSPPYG00000014222) #7	GPR149 (ENSPPYG00000014223) #8	MME (ENSPPYG00000014224) #9	STRIT1 (ENSPPYG00000039457) #10	PLCH1 (ENSPPYG00000014225) #11	C3orf33 (ENSPPYG00000014227) #12	SLC33A1 (ENSPPYG00000014228) #13	GMPS (ENSPPYG00000014229) #14	KCNAB1 (ENSPPYG00000014232) #16	SSR3 (ENSPPYG00000014233) #17	TIPARP (ENSPPYG00000014234) #18	ENSPPYG00000032921	LEKR1 (ENSPPYG00000014236) #20	CCNL1 (ENSPPYG00000014237) #21	VEPH1 (ENSPPYG00000014238) #23	PTX3 (ENSPPYG00000014239) #22	ENSPPYG00000040849	SHOX2 (ENSPPYG00000032262) #25	RSRC1 (ENSPPYG00000014242)	MLF1 (ENSPPYG00000037889)	GFM1 (ENSPPYG00000014244)	LXN (ENSPPYG00000014245)	RARRES1 (ENSPPYG00000014246)	MFSD1 (ENSPPYG00000014247)	ENSPPYG00000014249	ENSPPYG00000014252	IL12A (ENSPPYG00000014253)	C3orf80 (ENSPPYG00000014254)	IFT80 (ENSPPYG00000014255)	SMC4 (ENSPPYG00000014256)	TRIM59 (ENSPPYG00000034374)
Gibbon	MODERN SPECIES	1	STRIT1 (ENSNLEG00000028242) #10	ENSNLEG00000030011	PLCH1 (ENSNLEG00000003776) #11	C3orf33 (ENSNLEG00000032487) #12	SLC33A1 (ENSNLEG00000031523) #13	GMPS (ENSNLEG00000003856) #14	ENSNLEG00000034563	KCNAB1 (ENSNLEG00000028736) #16	ENSNLEG00000029311	SSR3 (ENSNLEG00000003961) #17	TIPARP (ENSNLEG00000003977) #18	ENSNLEG00000028927	LEKR1 (ENSNLEG00000003993) #20	CCNL1 (ENSNLEG00000003998) #21	VEPH1 (ENSNLEG00000004031) #23	PTX3 (ENSNLEG00000004099) #22	ENSNLEG00000004110	SHOX2 (ENSNLEG00000004124) #25	RSRC1 (ENSNLEG00000004137)	MLF1 (ENSNLEG00000004153)	GFM1 (ENSNLEG00000004176)	LXN (ENSNLEG00000033843)	ENSNLEG00000004243	MFSD1 (ENSNLEG00000004249)	ENSNLEG00000030545	ENSNLEG00000004345	ENSNLEG00000004371	C3orf80 (ENSNLEG00000034275)	IFT80 (ENSNLEG00000004380)	SMC4 (ENSNLEG00000004457)	ENSNLEG00000029782
Cercopithecidae	ANCESTRAL SPECIES	1	ENSGT00940000156745 #9	ENSGT00940000166505 #10	ENSGT00940000153773.a.b.a.a.b	ENSGT00940000157185 #11	ENSGT00390000004493 #12	ENSGT00940000154019.a #13	ENSGT00390000006591 #14	ENSGT00390000017288.d	ENSGT00940000155058.e.b	ENSGT00940000156760 #16	ENSGT00390000000970.b #17	ENSGT00940000155368 #18	ENSGT00940000164154	ENSGT00940000162647 #20	ENSGT00940000159135 #21	ENSGT01100000263515.a.b.a.a #22	ENSGT00390000018660 #23	ENSGT00940000163939	ENSGT00940000154287.b #25	ENSGT00730000111251	ENSGT00390000005023.b	ENSGT00550000074911	ENSGT00530000063813.b	ENSGT00530000063813.a	ENSGT00390000011700	ENSGT00390000000847	ENSGT00390000011127	ENSGT00390000016906	ENSGT00390000005823	ENSGT00440000033499	ENSGT00900000141094
Cercopithecinae	ANCESTRAL SPECIES	5	ENSGT00940000156745 #9	ENSGT00940000166505 #10	ENSGT00940000153773.a.b.a.a.b	ENSGT00940000157185 #11	ENSGT00390000004493 #12	ENSGT00940000154019.a #13	ENSGT00390000006591 #14	ENSGT00390000017288.d	ENSGT00940000155058.e.b	ENSGT00940000156760 #16	ENSGT00390000000970.b #17	ENSGT00940000155368 #18	ENSGT00940000164154	ENSGT00940000162647 #20	ENSGT00940000159135 #21	ENSGT01100000263515.a.b.a.a #22	ENSGT00390000018660 #23	ENSGT00940000163939	ENSGT00940000154287.b #25	ENSGT00730000111251	ENSGT00390000005023.b	ENSGT00550000074911	ENSGT00530000063813.b	ENSGT00530000063813.a	ENSGT00390000011700	ENSGT00390000000847	ENSGT00390000011127	ENSGT00390000016906	ENSGT00390000005823	ENSGT00440000033499	ENSGT00900000141094
Cercopithecinae_a	ANCESTRAL SPECIES	5	ENSGT00940000155901.a.a.b	ENSGT00940000156745 #9	ENSGT00940000166505 #10	ENSGT00940000153773.a.b.a.a.b	ENSGT00940000157185 #11	ENSGT00390000004493 #12	ENSGT00940000154019.a #13	ENSGT00390000006591 #14	ENSGT00390000017288.d	ENSGT00940000155058.e.b	ENSGT00940000156760 #16	ENSGT00390000000970.b.u #17	ENSGT00940000155368 #18	ENSGT00940000162647 #20	ENSGT00940000159135 #21	ENSGT01100000263515.a.b.a.a #22	ENSGT00390000018660 #23	ENSGT00940000163939	ENSGT00940000154287.b #25	ENSGT00730000111251	ENSGT00390000005023.b	ENSGT00550000074911	ENSGT00530000063813.b	ENSGT00530000063813.a	ENSGT00390000011700	ENSGT00390000000847	ENSGT00390000011127	ENSGT00390000016906	ENSGT00390000005823	ENSGT00440000033499	ENSGT00900000141094
Macaca	ANCESTRAL SPECIES	5	ENSGT00390000003715 #8	ENSGT00940000156745 #9	ENSGT00940000166505 #10	ENSGT00940000157185 #11	ENSGT00390000004493 #12	ENSGT00940000154019.a #13	ENSGT00390000006591 #14	ENSGT00390000017288.d	ENSGT00910000148059	ENSGT00940000155058.e.b	ENSGT00940000156760 #16	ENSGT00390000000970.b.u #17	ENSGT00940000155368 #18	ENSGT00940000162647 #20	ENSGT00940000159135 #21	ENSGT01100000263515.a.b.a.a #22	ENSGT00390000018660 #23	ENSGT00940000163939	ENSGT00940000154287.b #25	ENSGT00730000111251	ENSGT00390000005023.b	ENSGT00550000074911	ENSGT00530000063813.b	ENSGT00530000063813.a	ENSGT00390000011700	ENSGT00390000000847	ENSGT00390000011127	ENSGT00390000016906	ENSGT00390000005823	ENSGT00440000033499	ENSGT00900000141094
Pig-tailed macaque	MODERN SPECIES	147				STRIT1 (ENSMNEG00000034812) #10	PLCH1 (ENSMNEG00000041537) #11	C3orf33 (ENSMNEG00000039740) #12	SLC33A1 (ENSMNEG00000041243) #13	GMPS (ENSMNEG00000029760) #14	ENSMNEG00000037898	ENSMNEG00000038579	KCNAB1 (ENSMNEG00000030568) #16	SSR3 (ENSMNEG00000043849) #17	TIPARP (ENSMNEG00000041085) #18	LEKR1 (ENSMNEG00000032090) #20	CCNL1 (ENSMNEG00000042991) #21	PTX3 (ENSMNEG00000032162) #22	VEPH1 (ENSMNEG00000032781) #23	ENSMNEG00000013326	SHOX2 (ENSMNEG00000044817) #25	RSRC1 (ENSMNEG00000037212)	MLF1 (ENSMNEG00000037020)	LXN (ENSMNEG00000031431)	GFM1 (ENSMNEG00000033245)	RARRES1 (ENSMNEG00000039722)	MFSD1 (ENSMNEG00000040690)	IQCJ (ENSMNEG00000033302)	ENSMNEG00000039573	IL12A (ENSMNEG00000044033)	C3orf80 (ENSMNEG00000009440)	IFT80 (ENSMNEG00000031375)	SMC4 (ENSMNEG00000033241)
Macaca_a	ANCESTRAL SPECIES	5	ENSGT01030000234571.a.a	ENSGT00940000156903 #7	ENSGT00390000003715 #8	ENSGT00940000156745 #9	ENSGT00940000166505 #10	ENSGT00940000157185 #11	ENSGT00390000004493 #12	ENSGT00940000154019.a #13	ENSGT00390000006591 #14	ENSGT00390000017288.d	ENSGT00940000156760 #16	ENSGT00390000000970.b.u #17	ENSGT00940000155368 #18	ENSGT00940000162647 #20	ENSGT00940000159135 #21	ENSGT01100000263515.a.b.a.a #22	ENSGT00390000018660 #23	ENSGT00940000163939	ENSGT00950000183087.A.a.b.b.g.e.b.b.b.b.a	ENSGT00940000154287.b #25	ENSGT00730000111251	ENSGT00390000005023.b	ENSGT00550000074911	ENSGT00530000063813.b	ENSGT00530000063813.a	ENSGT00390000011700	ENSGT00390000000847	ENSGT00390000011127	ENSGT00390000016906	ENSGT00390000005823	ENSGT00440000033499
Crab-eating macaque	MODERN SPECIES	11	GPR149 (ENSMFAG00000030860) #8	MME (ENSMFAG00000039633) #9	STRIT1 (ENSMFAG00000039645) #10	PLCH1 (ENSMFAG00000042166) #11	ENSMFAG00000039668	C3orf33 (ENSMFAG00000004239) #12	SLC33A1 (ENSMFAG00000057969) #13	GMPS (ENSMFAG00000039350) #14	ENSMFAG00000035446	KCNAB1 (ENSMFAG00000032077) #16	SSR3 (ENSMFAG00000065033) #17	TIPARP (ENSMFAG00000040611) #18	LEKR1 (ENSMFAG00000032575) #20	CCNL1 (ENSMFAG00000030104) #21	VEPH1 (ENSMFAG00000043410) #23	PTX3 (ENSMFAG00000040863) #22	ENSMFAG00000002259	ENSMFAG00000011761	SHOX2 (ENSMFAG00000029366) #25	RSRC1 (ENSMFAG00000006023)	MLF1 (ENSMFAG00000032723)	GFM1 (ENSMFAG00000035731)	LXN (ENSMFAG00000038453)	RARRES1 (ENSMFAG00000023184)	MFSD1 (ENSMFAG00000041451)	IQCJ (ENSMFAG00000045301)	SCHIP1 (ENSMFAG00000002886)	IL12A (ENSMFAG00000032832)	ENSMFAG00000063065	IFT80 (ENSMFAG00000044919)	SMC4 (ENSMFAG00000003430)
Rhesus	MODERN SPECIES	11	GPR149 (ENSMMUG00000056924) #8	MME (ENSMMUG00000006662) #9	STRIT1 (ENSMMUG00000060633) #10	PLCH1 (ENSMMUG00000018341) #11	C2H3orf33 (ENSMMUG00000049932) #12	SLC33A1 (ENSMMUG00000040085) #13	GMPS (ENSMMUG00000007324) #14	ENSMMUG00000062803	KCNAB1 (ENSMMUG00000016968) #16	SSR3 (ENSMMUG00000016970) #17	TIPARP (ENSMMUG00000000366) #18	LEKR1 (ENSMMUG00000016495) #20	ENSMMUG00000058575	CCNL1 (ENSMMUG00000016497) #21	VEPH1 (ENSMMUG00000022848) #23	PTX3 (ENSMMUG00000062582) #22	SLC66A1L (ENSMMUG00000012046)	ENSMMUG00000051699	SHOX2 (ENSMMUG00000019030) #25	RSRC1 (ENSMMUG00000004956)	MLF1 (ENSMMUG00000004958)	GFM1 (ENSMMUG00000004961)	LXN (ENSMMUG00000004963)	RARRES1 (ENSMMUG00000014825)	MFSD1 (ENSMMUG00000023510)	SCHIP1 (ENSMMUG00000023081)	ENSMMUG00000064893	IL12A (ENSMMUG00000023084)	C2H3orf80 (ENSMMUG00000059508)	IFT80 (ENSMMUG00000017282)	SMC4 (ENSMMUG00000017291)
Cercopithecinae_b	ANCESTRAL SPECIES		ENSGT00940000156745 #9	ENSGT00940000166505 #10	ENSGT00940000153773.a.b.a.a.b	ENSGT00940000157185 #11	ENSGT00390000004493 #12	ENSGT00940000154019.a #13	ENSGT00390000006591 #14	ENSGT00910000148059	ENSGT00390000017288.d	ENSGT00940000155058.e.b	ENSGT00940000156760 #16	ENSGT00390000000970.b.u #17	ENSGT00940000155368 #18	ENSGT00940000162647 #20	ENSGT00940000159135 #21	ENSGT01100000263515.a.b.a.a #22	ENSGT00390000018660.e #23	ENSGT00940000163939	ENSGT00940000154287.b #25	ENSGT00730000111251	ENSGT00390000005023.b	ENSGT00550000074911	ENSGT00530000063813.b	ENSGT00530000063813.a	ENSGT00390000011700	ENSGT01030000234621.C.b	ENSGT00390000000847	ENSGT00950000183762	ENSGT00960000187632.b.a.a.b	ENSGT00390000011127	ENSGT00390000016906
Olive baboon	MODERN SPECIES	11	DHX36 (ENSPANG00000007914) #7	GPR149 (ENSPANG00000010538) #8	MME (ENSPANG00000005579) #9	STRIT1 (ENSPANG00000034540) #10	ENSPANG00000034846	PLCH1 (ENSPANG00000020169) #11	C3orf33 (ENSPANG00000011556) #12	SLC33A1 (ENSPANG00000015696) #13	GMPS (ENSPANG00000017625) #14	ENSPANG00000029453	KCNAB1 (ENSPANG00000015726) #16	ENSPANG00000006131 #17	TIPARP (ENSPANG00000007235) #18	LEKR1 (ENSPANG00000006077) #20	CCNL1 (ENSPANG00000015798) #21	PTX3 (ENSPANG00000015656) #22	VEPH1 (ENSPANG00000010193) #23	ENSPANG00000006508	ENSPANG00000038418	ENSPANG00000037645	ENSPANG00000008659	SHOX2 (ENSPANG00000008663) #25	RSRC1 (ENSPANG00000013402)	MLF1 (ENSPANG00000017579)	LXN (ENSPANG00000013296)	GFM1 (ENSPANG00000016512)	RARRES1 (ENSPANG00000006228)	ENSPANG00000047983	MFSD1 (ENSPANG00000002800)	ENSPANG00000043665	IQCJ (ENSPANG00000033072)
Cercopithecinae_d	ANCESTRAL SPECIES	81	ENSGT00940000156745 #9	ENSGT00940000166505 #10	ENSGT00940000153773.a.b.a.a.b	ENSGT00940000157185 #11	ENSGT00390000004493 #12	ENSGT00940000154019.a #13	ENSGT00390000006591 #14	ENSGT00910000148059	ENSGT00390000017288.d	ENSGT00940000155058.e.b	ENSGT00940000156760 #16	ENSGT00390000000970.b.u #17	ENSGT00940000155368 #18	ENSGT00940000162647 #20	ENSGT00940000159135 #21	ENSGT01100000263515.a.b.a.a #22	ENSGT00390000018660.e #23	ENSGT00940000163939	ENSGT00940000154287.b #25	ENSGT00730000111251	ENSGT00390000005023.b	ENSGT00550000074911	ENSGT00530000063813.b	ENSGT00530000063813.a	ENSGT00390000011700	ENSGT00390000000847	ENSGT00950000183762	ENSGT00950000183010.a.a.a.b.b.b	ENSGT00390000011127	ENSGT00390000016906	ENSGT00390000005823
Drill	MODERN SPECIES	581																PTX3 (ENSMLEG00000004048) #22	ENSMLEG00000009467 #23	ENSMLEG00000033295
Sooty mangabey	MODERN SPECIES	99	STRIT1 (ENSCATG00000043299) #10	ENSCATG00000045341	PLCH1 (ENSCATG00000043865) #11	C3orf33 (ENSCATG00000030263) #12	SLC33A1 (ENSCATG00000034638) #13	GMPS (ENSCATG00000031121) #14	ENSCATG00000022003	ENSCATG00000039951	KCNAB1 (ENSCATG00000015065) #16	ENSCATG00000037986	SSR3 (ENSCATG00000044932) #17	TIPARP (ENSCATG00000030375) #18	LEKR1 (ENSCATG00000045022) #20	CCNL1 (ENSCATG00000035386) #21	VEPH1 (ENSCATG00000029319) #23	PTX3 (ENSCATG00000039761) #22	ENSCATG00000011015	SHOX2 (ENSCATG00000036242) #25	RSRC1 (ENSCATG00000036643)	MLF1 (ENSCATG00000041224)	GFM1 (ENSCATG00000037622)	LXN (ENSCATG00000044907)	RARRES1 (ENSCATG00000041879)	MFSD1 (ENSCATG00000032129)	IQCJ (ENSCATG00000036638)	ENSCATG00000021185	ENSCATG00000016311	IL12A (ENSCATG00000041528)	C3orf80 (ENSCATG00000016242)	IFT80 (ENSCATG00000009307)	SMC4 (ENSCATG00000023485)
Vervet Monkey	MODERN SPECIES	6	RAP2B (ENSCSAG00000018898)	ARHGEF26 (ENSCSAG00000011952)	DHX36 (ENSCSAG00000011962) #7	GPR149 (ENSCSAG00000011972) #8	MME (ENSCSAG00000011987) #9	ENSCSAG00000012000 #11	C3orf33 (ENSCSAG00000012008) #12	SLC33A1 (ENSCSAG00000012012) #13	GMPS (ENSCSAG00000012022) #14	KCNAB1 (ENSCSAG00000012031) #16	ENSCSAG00000012048 #17	TIPARP (ENSCSAG00000012060) #18	ENSCSAG00000012064	LEKR1 (ENSCSAG00000012071) #20	CCNL1 (ENSCSAG00000012077) #21	PTX3 (ENSCSAG00000012090) #22	VEPH1 (ENSCSAG00000012098) #23	ENSCSAG00000012112	SHOX2 (ENSCSAG00000012131) #25	RSRC1 (ENSCSAG00000012145)	MLF1 (ENSCSAG00000012151)	LXN (ENSCSAG00000012154)	GFM1 (ENSCSAG00000012162)	RARRES1 (ENSCSAG00000012175)	MFSD1 (ENSCSAG00000012186)	ENSCSAG00000018896	SCHIP1 (ENSCSAG00000012193)	IL12A (ENSCSAG00000012218)	C3orf80 (ENSCSAG00000018894)	IFT80 (ENSCSAG00000012233)	SMC4 (ENSCSAG00000012248)
Rhinopithecus	ANCESTRAL SPECIES	257						ENSGT00390000004493 #12	ENSGT00940000154019.a #13	ENSGT00390000006591 #14	ENSGT00390000017288.d	ENSGT00940000155058.e.b	ENSGT00940000156760 #16	ENSGT00390000000970.b.p.a #17	ENSGT00940000155368 #18	ENSGT00940000162647 #20	ENSGT00940000159135 #21	ENSGT01100000263515.a.b.a.a #22	ENSGT00390000018660 #23	ENSGT00940000163939	ENSGT00940000154287.b #25	ENSGT00730000111251	ENSGT00390000005023.b	ENSGT00550000074911	ENSGT00530000063813.b	ENSGT00530000063813.a	ENSGT00390000011700	ENSGT00390000000847	ENSGT00950000183762
Golden snub-nosed monkey	MODERN SPECIES	1252			ENSRROG00000033946	C3orf33 (ENSRROG00000033959) #12	ENSRROG00000036896	SLC33A1 (ENSRROG00000040669) #13	GMPS (ENSRROG00000035915) #14	ENSRROG00000002902	KCNAB1 (ENSRROG00000003220) #16	ENSRROG00000030984	SSR3 (ENSRROG00000037341) #17	TIPARP (ENSRROG00000041667) #18	LEKR1 (ENSRROG00000044541) #20	CCNL1 (ENSRROG00000034433) #21	VEPH1 (ENSRROG00000039187) #23	PTX3 (ENSRROG00000035614) #22
Black snub-nosed monkey	MODERN SPECIES	1014																PTX3 (ENSRBIG00000024992) #22	ENSRBIG00000038256 #23	ENSRBIG00000024419	SHOX2 (ENSRBIG00000044489) #25	RSRC1 (ENSRBIG00000032161)	ENSRBIG00000024644	MLF1 (ENSRBIG00000038204)	GFM1 (ENSRBIG00000031363)	LXN (ENSRBIG00000040813)	RARRES1 (ENSRBIG00000041313)	MFSD1 (ENSRBIG00000044000)	IQCJ (ENSRBIG00000039280)	ENSRBIG00000006107	ENSRBIG00000039316	CMAS (ENSRBIG00000029767)	ST8SIA1 (ENSRBIG00000032474)
Platyrrhini	ANCESTRAL SPECIES	22	ENSGT01030000234571.a.a	ENSGT00940000156903 #7	ENSGT00390000003715 #8	ENSGT00940000156745 #9	ENSGT00940000166505 #10	ENSGT00940000153773.a.a.b.c.a	ENSGT00940000157185 #11	ENSGT00390000004493 #12	ENSGT00940000154019.a #13	ENSGT00390000006591.d #14	ENSGT00940000156760 #16	ENSGT00390000000970.b.n.a.a #17	ENSGT00940000155368 #18	ENSGT00940000162647 #20	ENSGT00940000159135 #21	ENSGT01100000263515.a.b.a.a #22	ENSGT00390000018660 #23	ENSGT00940000163939	ENSGT00940000154287.b #25	ENSGT00730000111251.b	ENSGT00730000111251.a	ENSGT00390000005023.b	ENSGT00530000063813.b	ENSGT00550000074911	ENSGT00530000063813.a	ENSGT00390000011700	ENSGT01030000234621.C.b	ENSGT00390000000847	ENSGT00910000145701.a	ENSGT00390000011127	ENSGT00390000016906
Cebidae	ANCESTRAL SPECIES	22	ENSGT01030000234571.a.a	ENSGT00940000156903 #7	ENSGT00390000003715 #8	ENSGT00940000156745 #9	ENSGT00940000166505 #10	ENSGT00940000153773.a.a.b.c.a	ENSGT00940000157185 #11	ENSGT00390000004493 #12	ENSGT00940000154019.a #13	ENSGT00390000006591.d #14	ENSGT00940000156760 #16	ENSGT00390000000970.b.n.a.b #17	ENSGT00940000155368 #18	ENSGT00940000162647 #20	ENSGT00940000159135 #21	ENSGT01100000263515.a.b.a.a #22	ENSGT00390000018660 #23	ENSGT00940000163939	ENSGT00940000154287.b #25	ENSGT00730000111251.b	ENSGT00390000005023.b	ENSGT00550000074911	ENSGT00530000063813.b	ENSGT00530000063813.a	ENSGT00390000011700	ENSGT01030000234621.C.b	ENSGT00390000000847	ENSGT00910000145701.a	ENSGT00390000011127	ENSGT00390000016906	ENSGT00440000033499
Marmoset	MODERN SPECIES	8	STRIT1 (ENSCJAG00000042341) #10	ENSCJAG00000073626	ENSCJAG00000072151	ENSCJAG00000078846	PLCH1 (ENSCJAG00000000917) #11	C3orf33 (ENSCJAG00000000910) #12	SLC33A1 (ENSCJAG00000000902) #13	GMPS (ENSCJAG00000000863) #14	ENSCJAG00000001100	ENSCJAG00000065233	KCNAB1 (ENSCJAG00000004577) #16	ENSCJAG00000045770 #17	TIPARP (ENSCJAG00000004657) #18	LEKR1 (ENSCJAG00000004676) #20	CCNL1 (ENSCJAG00000004692) #21	PTX3 (ENSCJAG00000004771) #22	VEPH1 (ENSCJAG00000004747) #23	ENSCJAG00000043693	ENSCJAG00000022309	ENSCJAG00000084466	SHOX2 (ENSCJAG00000073951) #25	ENSCJAG00000072338	RSRC1 (ENSCJAG00000036696)	MLF1 (ENSCJAG00000000352)	LXN (ENSCJAG00000000386)	GFM1 (ENSCJAG00000000363)	RARRES1 (ENSCJAG00000000389)	ENSCJAG00000055310	MFSD1 (ENSCJAG00000000395)	IQCJ (ENSCJAG00000000412)	ENSCJAG00000071072
Cebidae_a	ANCESTRAL SPECIES	12	ENSGT01030000234571.a.a	ENSGT00940000156903 #7	ENSGT00390000003715 #8	ENSGT00940000156745 #9	ENSGT00940000166505 #10	ENSGT00940000153773.a.a.b.c.a	ENSGT00940000157185 #11	ENSGT00390000004493 #12	ENSGT00940000154019.a #13	ENSGT00390000006591.d #14	ENSGT00940000156760 #16	ENSGT00390000000970.b.n.a.b #17	ENSGT00940000155368 #18	ENSGT00940000162647 #20	ENSGT00940000159135 #21	ENSGT01100000263515.a.b.a.a #22	ENSGT00390000018660 #23	ENSGT00940000163939	ENSGT00940000154287.b #25	ENSGT00730000111251.b	ENSGT00390000005023.b	ENSGT00550000074911	ENSGT00530000063813.b	ENSGT00530000063813.a	ENSGT00390000011700	ENSGT00390000000847	ENSGT00910000145701.a	ENSGT00390000011127	ENSGT00390000016906	ENSGT00440000033499	ENSGT00900000141094.g
Bolivian squirrel monkey	MODERN SPECIES	54	ENSSBOG00000014186	GPR149 (ENSSBOG00000019206) #8	MME (ENSSBOG00000016144) #9	ENSSBOG00000028023	STRIT1 (ENSSBOG00000010194) #10	ENSSBOG00000005590	PLCH1 (ENSSBOG00000035699) #11	C3orf33 (ENSSBOG00000022745) #12	SLC33A1 (ENSSBOG00000022127) #13	GMPS (ENSSBOG00000033046) #14	KCNAB1 (ENSSBOG00000022593) #16	ENSSBOG00000036066 #17	TIPARP (ENSSBOG00000030511) #18	LEKR1 (ENSSBOG00000035709) #20	CCNL1 (ENSSBOG00000035767) #21	PTX3 (ENSSBOG00000030163) #22	VEPH1 (ENSSBOG00000027631) #23	ENSSBOG00000021272	SHOX2 (ENSSBOG00000035166) #25	RSRC1 (ENSSBOG00000027990)	MLF1 (ENSSBOG00000024403)	LXN (ENSSBOG00000034211)	GFM1 (ENSSBOG00000023252)	RARRES1 (ENSSBOG00000032081)	ENSSBOG00000026376	MFSD1 (ENSSBOG00000031153)	IQCJ (ENSSBOG00000013244)	ENSSBOG00000031233	ENSSBOG00000021868	IL12A (ENSSBOG00000034138)	ENSSBOG00000032637
Capuchin	MODERN SPECIES	270														LEKR1 (ENSCCAG00000024625) #20	CCNL1 (ENSCCAG00000004737) #21	PTX3 (ENSCCAG00000017300) #22	VEPH1 (ENSCCAG00000024053) #23	ENSCCAG00000000022	SHOX2 (ENSCCAG00000026119) #25	RSRC1 (ENSCCAG00000032077)	MLF1 (ENSCCAG00000028078)	LXN (ENSCCAG00000020030)	GFM1 (ENSCCAG00000025561)	RARRES1 (ENSCCAG00000032647)	MFSD1 (ENSCCAG00000038095)	IQCJ (ENSCCAG00000030767)	ENSCCAG00000024648	ENSCCAG00000028195	IL12A (ENSCCAG00000034876)
Mas night monkey	MODERN SPECIES	400				STRIT1 (ENSANAG00000035345) #10	ENSANAG00000026678	PLCH1 (ENSANAG00000037829) #11	C3orf33 (ENSANAG00000037818) #12	SLC33A1 (ENSANAG00000036331) #13	ENSANAG00000036394 #14	KCNAB1 (ENSANAG00000032104) #16	ENSANAG00000025983 #17	TIPARP (ENSANAG00000036588) #18	LEKR1 (ENSANAG00000025264) #20	CCNL1 (ENSANAG00000035618) #21	ENSANAG00000037179	PTX3 (ENSANAG00000021902) #22	VEPH1 (ENSANAG00000020731) #23	ENSANAG00000036049	SHOX2 (ENSANAG00000013863) #25	ENSANAG00000029278	MLF1 (ENSANAG00000026540)	LXN (ENSANAG00000024771)	GFM1 (ENSANAG00000035983)	RARRES1 (ENSANAG00000027312)	MFSD1 (ENSANAG00000024294)	ENSANAG00000025825	ENSANAG00000021265	ENSANAG00000021216	ENSANAG00000018582	ENSANAG00000000056	IL12A (ENSANAG00000028740)
Tarsier	MODERN SPECIES	6829																PTX3 (ENSTSYG00000006774) #22	ENSTSYG00000025715 #23
Euarchontoglires_A	ANCESTRAL SPECIES	2	ENSGT00390000003715 #8	ENSGT00940000156745 #9	ENSGT00940000166505 #10	ENSGT00940000157185 #11	ENSGT00390000004493 #12	ENSGT00940000154019.a #13	ENSGT00390000006591 #14	ENSGT00940000160473 #15	ENSGT00940000156760 #16	ENSGT00390000000970.b #17	ENSGT00940000155368 #18	ENSGT00940000164154	ENSGT00940000162647 #20	ENSGT00940000159135 #21	ENSGT00390000018660 #23	ENSGT01100000263515.a.b.a.a #22	ENSGT00940000178902	ENSGT00940000154287.b #25	ENSGT00730000111251	ENSGT00390000005023.b	ENSGT00550000074911	ENSGT00530000063813.b	ENSGT00530000063813.a	ENSGT00390000011700	ENSGT01030000234621.C.b	ENSGT00390000000847	ENSGT00390000011127	ENSGT00390000016906	ENSGT00720000110080	ENSGT00390000005823	ENSGT00440000033499
Tree shrew	MODERN SPECIES	3128														CCNL1 (ENSTBEG00000007980) #21	VEPH1 (ENSTBEG00000008938) #23	PTX3 (ENSTBEG00000002138) #22
Glires	ANCESTRAL SPECIES	2	ENSGT00390000003715 #8	ENSGT00940000156745 #9	ENSGT00940000166505 #10	ENSGT00940000157185 #11	ENSGT00390000004493 #12	ENSGT00940000154019.a #13	ENSGT00390000006591 #14	ENSGT00940000160473 #15	ENSGT00940000156760 #16	ENSGT00390000000970.b #17	ENSGT00940000155368 #18	ENSGT00940000164154	ENSGT00940000162647 #20	ENSGT00940000159135 #21	ENSGT00390000018660 #23	ENSGT01100000263515.a.b.a.a #22	ENSGT00940000178902	ENSGT00940000154287.b #25	ENSGT00730000111251	ENSGT00390000005023.b	ENSGT00550000074911	ENSGT00530000063813.b	ENSGT00530000063813.a	ENSGT00390000011700	ENSGT01030000234621.C.b	ENSGT00390000000847	ENSGT00390000011127	ENSGT00390000016906	ENSGT00720000110080	ENSGT00390000005823	ENSGT00440000033499
Lagomorpha	ANCESTRAL SPECIES	6	ENSGT00940000160283	ENSGT01030000234571.a.a	ENSGT00940000156903 #7	ENSGT00390000003715 #8	ENSGT01080000259023	ENSGT00940000157185 #11	ENSGT00390000004493 #12	ENSGT00940000154019.a #13	ENSGT00390000006591 #14	ENSGT00940000160473 #15	ENSGT00940000156760 #16	ENSGT00390000000970.b #17	ENSGT00940000155368 #18	ENSGT00940000162647 #20	ENSGT00940000159135 #21	ENSGT01100000263515.a.b.a.a #22	ENSGT00390000018660 #23	ENSGT00940000154287.b #25	ENSGT00730000111251	ENSGT00390000005023.b	ENSGT00550000074911	ENSGT00530000063813.b	ENSGT00530000063813.a	ENSGT00390000011700	ENSGT01030000234621.C.b	ENSGT00390000000847	ENSGT00390000011127	ENSGT00390000016906	ENSGT00720000110080	ENSGT00440000033499	ENSGT00900000141094
Rabbit	MODERN SPECIES	5	ENSOCUG00000029864	PLCH1 (ENSOCUG00000009260) #11	C3orf33 (ENSOCUG00000017756) #12	SLC33A1 (ENSOCUG00000001478) #13	GMPS (ENSOCUG00000001480) #14	ENSOCUG00000002317 #15	ENSOCUG00000002314 #15	KCNAB1 (ENSOCUG00000007885) #16	ENSOCUG00000011704	SSR3 (ENSOCUG00000007898) #17	TIPARP (ENSOCUG00000014910) #18	LEKR1 (ENSOCUG00000011073) #20	ENSOCUG00000034465	CCNL1 (ENSOCUG00000003451) #21	VEPH1 (ENSOCUG00000010133) #23	PTX3 (ENSOCUG00000010142) #22	ENSOCUG00000035608	SHOX2 (ENSOCUG00000029123) #25	RSRC1 (ENSOCUG00000030494)	MLF1 (ENSOCUG00000013549)	GFM1 (ENSOCUG00000013561)	LXN (ENSOCUG00000024041)	RARRES1 (ENSOCUG00000029263)	ENSOCUG00000026179	MFSD1 (ENSOCUG00000001272)	ENSOCUG00000023648	IQCJ (ENSOCUG00000022809)	ENSOCUG00000011278	IL12A (ENSOCUG00000010149)	ENSOCUG00000031459	ENSOCUG00000033720
Rodentia	ANCESTRAL SPECIES	2	ENSGT00390000003715 #8	ENSGT00940000156745 #9	ENSGT00940000166505 #10	ENSGT00940000157185 #11	ENSGT00390000004493 #12	ENSGT00940000154019.a #13	ENSGT00390000006591 #14	ENSGT00940000160473 #15	ENSGT00940000156760 #16	ENSGT00390000000970.b #17	ENSGT00940000155368 #18	ENSGT00940000164154	ENSGT00940000162647 #20	ENSGT00940000159135 #21	ENSGT00390000018660 #23	ENSGT01100000263515.a.b.a.a #22	ENSGT00940000178902	ENSGT00940000154287.b #25	ENSGT00730000111251	ENSGT00390000005023.b	ENSGT00550000074911	ENSGT00530000063813.b	ENSGT00530000063813.a	ENSGT00390000011700	ENSGT01030000234621.C.b	ENSGT00390000000847	ENSGT00390000011127	ENSGT00390000016906	ENSGT00720000110080	ENSGT00390000005823	ENSGT00440000033499
Rodentia_B	ANCESTRAL SPECIES	2	ENSGT00390000003715 #8	ENSGT00940000156745 #9	ENSGT00940000166505 #10	ENSGT00940000157185 #11	ENSGT00390000004493 #12	ENSGT00940000154019.a #13	ENSGT00390000006591 #14	ENSGT00940000160473 #15	ENSGT00940000156760 #16	ENSGT00390000000970.b #17	ENSGT00940000155368 #18	ENSGT00940000164154	ENSGT00940000162647 #20	ENSGT00940000159135 #21	ENSGT00390000018660 #23	ENSGT01100000263515.a.b.a.a #22	ENSGT00940000178902	ENSGT00940000154287.b #25	ENSGT00730000111251	ENSGT00390000005023.b	ENSGT00550000074911	ENSGT00530000063813.b	ENSGT00530000063813.a	ENSGT00390000011700	ENSGT01030000234621.C.b	ENSGT00390000000847	ENSGT00390000011127	ENSGT00390000016906	ENSGT00720000110080	ENSGT00390000005823	ENSGT00440000033499
Myomorpha	ANCESTRAL SPECIES	38	ENSGT00390000003715 #8	ENSGT00940000156745 #9	ENSGT00940000166505 #10	ENSGT00940000157185 #11	ENSGT00390000004493 #12	ENSGT00940000154019.a #13	ENSGT00390000006591 #14	ENSGT00940000160473 #15	ENSGT00940000156760 #16	ENSGT00390000000970.b #17	ENSGT00940000155368 #18	ENSGT00940000164154	ENSGT00940000162647 #20	ENSGT00940000159135 #21	ENSGT00390000018660 #23	ENSGT01100000263515.a.b.a.a #22	ENSGT00940000178902	ENSGT00940000154287.b #25	ENSGT00730000111251	ENSGT00390000005023.b	ENSGT00550000074911	ENSGT00530000063813.b	ENSGT00530000063813.a	ENSGT00390000011700	ENSGT01030000234621.C.b	ENSGT00390000000847	ENSGT00390000011127	ENSGT00390000016906	ENSGT00720000110080	ENSGT00390000005823	ENSGT00440000033499
Muroidea	ANCESTRAL SPECIES	44	ENSGT00390000003715 #8	ENSGT00940000156745 #9	ENSGT00940000166505 #10	ENSGT00940000157185 #11	ENSGT00390000004493 #12	ENSGT00940000154019.a #13	ENSGT00390000006591 #14	ENSGT00940000160473 #15	ENSGT00940000156760 #16	ENSGT00390000000970.b #17	ENSGT00940000155368 #18	ENSGT00940000164154	ENSGT00940000162647 #20	ENSGT00940000159135 #21	ENSGT00390000018660 #23	ENSGT01100000263515.a.b.a.a #22	ENSGT00940000178902	ENSGT00940000154287.b #25	ENSGT00730000111251	ENSGT00390000005023.b	ENSGT00550000074911	ENSGT00530000063813.b	ENSGT00530000063813.a	ENSGT00390000011700	ENSGT01030000234621.C.b	ENSGT00390000000847	ENSGT00390000011127	ENSGT00390000016906	ENSGT00720000110080	ENSGT00390000005823	ENSGT00440000033499
Muroidea_A	ANCESTRAL SPECIES	5	ENSGT00940000156745 #9	ENSGT01100000265011	ENSGT00940000157185 #11	ENSGT00390000004493 #12	ENSGT00940000154019.a #13	ENSGT00390000006591 #14	ENSGT00940000160473.i #15	ENSGT00940000160473.j #15	ENSGT00940000156760 #16	ENSGT00390000000970.b #17	ENSGT00940000155368 #18	ENSGT00940000164154	ENSGT00940000162647 #20	ENSGT00940000159135 #21	ENSGT00390000018660 #23	ENSGT01100000263515.a.b.a.a #22	ENSGT00940000178902	ENSGT00940000154287.b #25	ENSGT00730000111251	ENSGT00390000005023.b	ENSGT00550000074911	ENSGT00530000063813.b	ENSGT00530000063813.a	ENSGT00390000011700	ENSGT01030000234621.C.b	ENSGT00390000000847	ENSGT00390000011127	ENSGT00390000016906	ENSGT00720000110080	ENSGT00390000005823	ENSGT00440000033499
Murinae	ANCESTRAL SPECIES	5	ENSGT01100000265011	ENSGT00940000157185 #11	ENSGT00390000004493 #12	ENSGT00940000154019.a #13	ENSGT00390000006591 #14	ENSGT00940000160473.i #15	ENSGT00940000160473.j.d #15	ENSGT00940000160473.j.c.a #15	ENSGT00940000160473.j.c.b #15	ENSGT00940000156760 #16	ENSGT00390000000970.b #17	ENSGT00940000155368 #18	ENSGT00940000162647 #20	ENSGT00940000159135 #21	ENSGT00390000018660 #23	ENSGT01100000263515.a.b.a.a #22	ENSGT00940000178902	ENSGT00940000154287.b #25	ENSGT00730000111251	ENSGT00390000005023.b	ENSGT00550000074911	ENSGT00530000063813.b	ENSGT00530000063813.a	ENSGT00390000011700	ENSGT00390000000847	ENSGT00390000011127	ENSGT00390000016906	ENSGT00720000110080	ENSGT00390000005823	ENSGT00440000033499	ENSGT00900000141094
Mus	ANCESTRAL SPECIES	7	ENSGT01100000265011	ENSGT00940000157185 #11	ENSGT00390000004493 #12	ENSGT00940000154019.a #13	ENSGT00390000006591 #14	ENSGT00940000160473.i #15	ENSGT00940000160473.j.d.a #15	ENSGT00940000160473.j.c.a #15	ENSGT00940000156760 #16	ENSGT00390000000970.b #17	ENSGT00940000155368 #18	ENSGT00940000164154	ENSGT00940000162647 #20	ENSGT00940000159135 #21	ENSGT00390000018660 #23	ENSGT01100000263515.a.b.a.a #22	ENSGT00940000178902	ENSGT00940000154287.b #25	ENSGT00730000111251	ENSGT00390000005023.b	ENSGT00550000074911	ENSGT00530000063813.b	ENSGT00530000063813.a	ENSGT00390000011700	ENSGT00390000000847	ENSGT00390000011127	ENSGT00390000016906	ENSGT00720000110080	ENSGT00390000005823	ENSGT00440000033499	ENSGT00900000141094
Mus_A	ANCESTRAL SPECIES	9	ENSGT00940000156745 #9	ENSGT01100000265011	ENSGT00940000157185 #11	ENSGT00390000004493 #12	ENSGT00940000154019.a #13	ENSGT00390000006591 #14	ENSGT00940000160473.i #15	ENSGT00940000160473.j.d.a #15	ENSGT00940000160473.j.c.a #15	ENSGT00940000156760 #16	ENSGT00390000000970.b #17	ENSGT00940000155368 #18	ENSGT00940000162647 #20	ENSGT00940000159135 #21	ENSGT00390000018660 #23	ENSGT01100000263515.a.b.a.a #22	ENSGT00940000178902	ENSGT00940000154287.b #25	ENSGT00730000111251	ENSGT00390000005023.b	ENSGT00550000074911	ENSGT00530000063813.b	ENSGT00530000063813.a	ENSGT00390000011700	ENSGT00390000000847	ENSGT00390000011127	ENSGT00390000016906	ENSGT00720000110080	ENSGT00390000005823	ENSGT00440000033499	ENSGT00900000141094
Mus_B	ANCESTRAL SPECIES	8	ENSGT00390000003715 #8	ENSGT00940000156745 #9	ENSGT01100000265011	ENSGT00940000157185 #11	ENSGT00390000004493 #12	ENSGT00940000154019.a #13	ENSGT00390000006591 #14	ENSGT00940000160473.i #15	ENSGT00940000160473.j.d.a #15	ENSGT00940000156760 #16	ENSGT00390000000970.b #17	ENSGT00940000155368 #18	ENSGT00940000162647 #20	ENSGT00940000159135 #21	ENSGT00390000018660 #23	ENSGT01100000263515.a.b.a.a #22	ENSGT00940000178902	ENSGT00940000154287.b #25	ENSGT00730000111251	ENSGT00390000005023.b	ENSGT00550000074911	ENSGT00530000063813.b	ENSGT00530000063813.a	ENSGT00390000011700	ENSGT00390000000847	ENSGT00390000011127	ENSGT00390000016906	ENSGT00720000110080	ENSGT00390000005823	ENSGT00440000033499	ENSGT00900000141094
Mouse	MODERN SPECIES	12	Gmps (ENSMUSG00000027823) #14	Vmn2r1 (ENSMUSG00000027824) #15	Vmn2r2 (ENSMUSG00000043897) #15	Vmn2r3 (ENSMUSG00000091572) #15	Vmn2r128 (ENSMUSG00000091967) #15	Vmn2r4 (ENSMUSG00000092049) #15	Vmn2r5 (ENSMUSG00000068999) #15	Vmn2r6 (ENSMUSG00000090581) #15	Vmn2r7 (ENSMUSG00000062200) #15	Kcnab1 (ENSMUSG00000027827) #16	Ssr3 (ENSMUSG00000027828) #17	Tiparp (ENSMUSG00000034640) #18	Lekr1 (ENSMUSG00000074579) #20	Ccnl1 (ENSMUSG00000027829) #21	Veph1 (ENSMUSG00000027831) #23	Ptx3 (ENSMUSG00000027832) #22	Shox2 (ENSMUSG00000027833) #25	Rsrc1 (ENSMUSG00000034544)	Mlf1 (ENSMUSG00000048416)	Gfm1 (ENSMUSG00000027774)	Lxn (ENSMUSG00000047557)	Rarres1 (ENSMUSG00000049404)	Mfsd1 (ENSMUSG00000027775)	Iqcj (ENSMUSG00000051777)	Iqschfp (ENSMUSG00000102422)	Schip1 (ENSMUSG00000027777)	Il12a (ENSMUSG00000027776)	1110032F04Rik (ENSMUSG00000046999)	Ift80 (ENSMUSG00000027778)	Smc4 (ENSMUSG00000034349)	Trim59 (ENSMUSG00000034317)
Mus_C	ANCESTRAL SPECIES	6	ENSGT00390000003715 #8	ENSGT00940000156745 #9	ENSGT00940000157185 #11	ENSGT00390000004493 #12	ENSGT00940000154019.a #13	ENSGT00390000006591 #14	ENSGT00940000160473.i #15	ENSGT00940000160473.j.d.a #15	ENSGT00940000156760 #16	ENSGT00390000000970.b #17	ENSGT00940000155368 #18	ENSGT00940000164154	ENSGT00940000162647 #20	ENSGT00940000159135 #21	ENSGT00390000018660 #23	ENSGT01100000263515.a.b.a.a #22	ENSGT00940000178902	ENSGT00940000154287.b #25	ENSGT00730000111251	ENSGT00390000005023.b	ENSGT00550000074911	ENSGT00530000063813.b	ENSGT00530000063813.a	ENSGT00390000011700	ENSGT00390000000847	ENSGT00390000011127	ENSGT00390000016906	ENSGT00720000110080	ENSGT00390000005823	ENSGT00440000033499	ENSGT00900000141094
Steppe mouse	MODERN SPECIES	3367																Ptx3 (ENSMSIG00000025194) #22	ENSMSIG00000025177	Shox2 (ENSMSIG00000025154) #25	Rsrc1 (ENSMSIG00000025037)	Mlf1 (ENSMSIG00000025018)	Lxn (ENSMSIG00000025005)	Gfm1 (ENSMSIG00000024997)	Rarres1 (ENSMSIG00000024983)	Mfsd1 (ENSMSIG00000024948)	ENSMSIG00000024939	ENSMSIG00000024873	ENSMSIG00000024849	ENSMSIG00000024823	Schip1 (ENSMSIG00000024744)	Il12a (ENSMSIG00000024713)	ENSMSIG00000024708
spretus	MODERN SPECIES	12	Plch1 (MGP_SPRETEiJ_G0025975) #11	E130311K13Rik (MGP_SPRETEiJ_G0025976) #12	Slc33a1 (MGP_SPRETEiJ_G0025977) #13	MGP_SPRETEiJ_G0025978 #14	MGP_SPRETEiJ_G0025979 #15	MGP_SPRETEiJ_G0025980 #15	MGP_SPRETEiJ_G0025981 #15	MGP_SPRETEiJ_G0025982 #15	MGP_SPRETEiJ_G0025983 #15	Kcnab1 (MGP_SPRETEiJ_G0025984) #16	Ssr3 (MGP_SPRETEiJ_G0025985) #17	Tiparp (MGP_SPRETEiJ_G0025986) #18	MGP_SPRETEiJ_G0025987	Ccnl1 (MGP_SPRETEiJ_G0025988) #21	Veph1 (MGP_SPRETEiJ_G0025989) #23	Ptx3 (MGP_SPRETEiJ_G0025990) #22	Shox2 (MGP_SPRETEiJ_G0025991) #25	Rsrc1 (MGP_SPRETEiJ_G0025992)	Mlf1 (MGP_SPRETEiJ_G0025993)	Gfm1 (MGP_SPRETEiJ_G0025994)	Lxn (MGP_SPRETEiJ_G0025995)	Rarres1 (MGP_SPRETEiJ_G0025996)	Mfsd1 (MGP_SPRETEiJ_G0025997)	Iqcj (MGP_SPRETEiJ_G0025998)	MGP_SPRETEiJ_G0025999	MGP_SPRETEiJ_G0026000	Il12a (MGP_SPRETEiJ_G0026001)	MGP_SPRETEiJ_G0026002	1110032F04Rik (MGP_SPRETEiJ_G0026003)	Ift80 (MGP_SPRETEiJ_G0026004)	Smc4 (MGP_SPRETEiJ_G0026005)
Ryukyu mouse	MODERN SPECIES	12	Gpr149 (MGP_CAROLIEiJ_G0025033) #8	Mme (MGP_CAROLIEiJ_G0025034) #9	Plch1 (MGP_CAROLIEiJ_G0025035) #11	MGP_CAROLIEiJ_G0025036 #12	Slc33a1 (MGP_CAROLIEiJ_G0025037) #13	Gmps (MGP_CAROLIEiJ_G0025038) #14	MGP_CAROLIEiJ_G0025039 #15	Vmn2r1 (MGP_CAROLIEiJ_G0025040) #15	MGP_CAROLIEiJ_G0025041 #15	Kcnab1 (MGP_CAROLIEiJ_G0025042) #16	Ssr3 (MGP_CAROLIEiJ_G0025043) #17	Tiparp (MGP_CAROLIEiJ_G0025044) #18	MGP_CAROLIEiJ_G0025045	Ccnl1 (MGP_CAROLIEiJ_G0025046) #21	Veph1 (MGP_CAROLIEiJ_G0025047) #23	Ptx3 (MGP_CAROLIEiJ_G0025048) #22	Shox2 (MGP_CAROLIEiJ_G0025049) #25	Rsrc1 (MGP_CAROLIEiJ_G0025050)	Mlf1 (MGP_CAROLIEiJ_G0025051)	Gfm1 (MGP_CAROLIEiJ_G0025052)	Lxn (MGP_CAROLIEiJ_G0025053)	Rarres1 (MGP_CAROLIEiJ_G0025054)	Mfsd1 (MGP_CAROLIEiJ_G0025055)	Iqcj (MGP_CAROLIEiJ_G0025056)	MGP_CAROLIEiJ_G0025057	MGP_CAROLIEiJ_G0025058	Il12a (MGP_CAROLIEiJ_G0025059)	MGP_CAROLIEiJ_G0025060	1110032F04Rik (MGP_CAROLIEiJ_G0025061)	Ift80 (MGP_CAROLIEiJ_G0025062)	Smc4 (MGP_CAROLIEiJ_G0025063)
Shrew mouse	MODERN SPECIES	17	Dhx36 (MGP_PahariEiJ_G0026476) #7	Gpr149 (MGP_PahariEiJ_G0026477) #8	Mme (MGP_PahariEiJ_G0026478) #9	Plch1 (MGP_PahariEiJ_G0026479) #11	E130311K13Rik (MGP_PahariEiJ_G0026480) #12	Slc33a1 (MGP_PahariEiJ_G0026481) #13	Gmps (MGP_PahariEiJ_G0026482) #14	Vmn2r1 (MGP_PahariEiJ_G0026483) #15	MGP_PahariEiJ_G0026484 #15	Kcnab1 (MGP_PahariEiJ_G0026485) #16	Ssr3 (MGP_PahariEiJ_G0026486) #17	Tiparp (MGP_PahariEiJ_G0026487) #18	MGP_PahariEiJ_G0026488	Ccnl1 (MGP_PahariEiJ_G0026489) #21	Veph1 (MGP_PahariEiJ_G0026490) #23	Ptx3 (MGP_PahariEiJ_G0026491) #22	Shox2 (MGP_PahariEiJ_G0026492) #25	Rsrc1 (MGP_PahariEiJ_G0026493)	Mlf1 (MGP_PahariEiJ_G0026494)	Gfm1 (MGP_PahariEiJ_G0026495)	Lxn (MGP_PahariEiJ_G0026496)	Rarres1 (MGP_PahariEiJ_G0026497)	Mfsd1 (MGP_PahariEiJ_G0026498)	MGP_PahariEiJ_G0001977	Iqcj (MGP_PahariEiJ_G0026499)	MGP_PahariEiJ_G0026500	MGP_PahariEiJ_G0026501	Il12a (MGP_PahariEiJ_G0026502)	MGP_PahariEiJ_G0026503	1110032F04Rik (MGP_PahariEiJ_G0026504)	Ift80 (MGP_PahariEiJ_G0026505)
Rat	MODERN SPECIES	11	Gmps (ENSRNOG00000051151) #14	Vom2r44 (ENSRNOG00000030104) #15	Vom2r45 (ENSRNOG00000064237) #15	Vom2r46 (ENSRNOG00000068452) #15	ENSRNOG00000064787	LOC120100835 (ENSRNOG00000066617) #15	AABR07010333.1 (ENSRNOG00000031248)	Vom2r47 (ENSRNOG00000028345) #15	Kcnab1 (ENSRNOG00000056697) #16	Ssr3 (ENSRNOG00000011148) #17	Tiparp (ENSRNOG00000011238) #18	Lekr1 (ENSRNOG00000031247) #20	Ccnl1 (ENSRNOG00000011586) #21	Veph1 (ENSRNOG00000012427) #23	ENSRNOG00000069471	Ptx3 (ENSRNOG00000012280) #22	Shox2 (ENSRNOG00000012478) #25	Rsrc1 (ENSRNOG00000062777)	Mlf1 (ENSRNOG00000012827)	Gfm1 (ENSRNOG00000012873)	Lxn (ENSRNOG00000013572)	Rarres1 (ENSRNOG00000037853)	Mfsd1 (ENSRNOG00000013790)	ENSRNOG00000066920	Schip1 (ENSRNOG00000009276)	Il12a (ENSRNOG00000009468)	LOC100362176 (ENSRNOG00000009803)	Ift80 (ENSRNOG00000009808)	Smc4 (ENSRNOG00000010274)	Trim59 (ENSRNOG00000010515)	Kpna4 (ENSRNOG00000010768)
Cricetidae	ANCESTRAL SPECIES	6	ENSGT00940000156745 #9	ENSGT01100000265011	ENSGT00940000157185 #11	ENSGT00390000004493 #12	ENSGT00940000154019.a #13	ENSGT00390000006591 #14	ENSGT00940000160473.i #15	ENSGT00940000160473.j #15	ENSGT00940000156760 #16	ENSGT00390000000970.b #17	ENSGT00940000155368 #18	ENSGT00940000164154	ENSGT00940000162647 #20	ENSGT00940000159135 #21	ENSGT00390000018660 #23	ENSGT01100000263515.a.b.a.a #22	ENSGT00940000154287.b #25	ENSGT00730000111251	ENSGT00390000005023.b	ENSGT00550000074911	ENSGT00530000063813.b	ENSGT00530000063813.a	ENSGT00390000011700	ENSGT01030000234621.C.b	ENSGT00390000011127	ENSGT00390000016906	ENSGT00720000110080	ENSGT00390000005823	ENSGT00440000033499	ENSGT00900000141094	ENSGT00940000160146.C
Cricetinae	ANCESTRAL SPECIES	13	ENSGT00390000003715 #8	ENSGT00940000156745 #9	ENSGT00940000157185 #11	ENSGT00390000004493 #12	ENSGT00940000154019.a #13	ENSGT00390000006591 #14	ENSGT00940000160473.i #15	ENSGT00940000160473.j #15	ENSGT00940000156760 #16	ENSGT00390000000970.b #17	ENSGT00940000155368 #18	ENSGT00940000164154	ENSGT00940000165173	ENSGT00940000162647 #20	ENSGT00940000159135 #21	ENSGT01100000263515.a.b.a.a #22	ENSGT00390000018660 #23	ENSGT00940000154287.b #25	ENSGT00730000111251	ENSGT00940000168816	ENSGT00390000005023.b	ENSGT00550000074911	ENSGT00530000063813.b	ENSGT00530000063813.a	ENSGT00390000011700	ENSGT01030000234621.C.b	ENSGT00390000011127	ENSGT00390000016906	ENSGT00720000110080	ENSGT00390000005823	ENSGT00440000033499
Golden Hamster	MODERN SPECIES	694	Arhgef26 (ENSMAUG00000020238)	Dhx36 (ENSMAUG00000000158) #7	Gpr149 (ENSMAUG00000002545) #8	Mme (ENSMAUG00000005415) #9	ENSMAUG00000010321	Plch1 (ENSMAUG00000015272) #11	E130311K13Rik (ENSMAUG00000016143) #12	Slc33a1 (ENSMAUG00000007872) #13	Gmps (ENSMAUG00000009597) #14	Kcnab1 (ENSMAUG00000008327) #16	Ssr3 (ENSMAUG00000012131) #17	Tiparp (ENSMAUG00000013170) #18	ENSMAUG00000008702	Ccnl1 (ENSMAUG00000010127) #21	Veph1 (ENSMAUG00000011592) #23	Ptx3 (ENSMAUG00000013157) #22	Shox2 (ENSMAUG00000010791) #25	Rsrc1 (ENSMAUG00000012551)	ENSMAUG00000014811	Gfm1 (ENSMAUG00000000611)	Lxn (ENSMAUG00000005608)	ENSMAUG00000010396	Mfsd1 (ENSMAUG00000011768)
Chinese hamster chok1gshd	MODERN SPECIES	352	ENSCGRG00001021700	Plch1 (ENSCGRG00001000217) #11	E130311K13Rik (ENSCGRG00001024290) #12	Slc33a1 (ENSCGRG00001018761) #13	Gmps (ENSCGRG00001018772) #14	Vmn2r1 (ENSCGRG00001023200) #15	ENSCGRG00001017013 #15	ENSCGRG00001005615 #15	Kcnab1 (ENSCGRG00001005457) #16	Ssr3 (ENSCGRG00001019723) #17	Tiparp (ENSCGRG00001011123) #18	ENSCGRG00001018287	ENSCGRG00001012986 #20	Ccnl1 (ENSCGRG00001000165) #21	ENSCGRG00001019867	Ptx3 (ENSCGRG00001000361) #22	Veph1 (ENSCGRG00001013806) #23	Shox2 (ENSCGRG00001011092) #25	ENSCGRG00001004798	ENSCGRG00001016799	Lxn (ENSCGRG00001022023)	GFM1 (ENSCGRG00001022095)	Rarres1 (ENSCGRG00001019406)	Mfsd1 (ENSCGRG00001015422)	ENSCGRG00001016644	Schip1 (ENSCGRG00001023430)	Il12a (ENSCGRG00001009859)	ENSCGRG00001021940	1110032F04Rik (ENSCGRG00001003309)	Ift80 (ENSCGRG00001016127)	Trim59 (ENSCGRG00001007406)
Cricetidae_B	ANCESTRAL SPECIES	3	ENSGT00940000156745 #9	ENSGT01100000265011	ENSGT00940000157185 #11	ENSGT00390000004493 #12	ENSGT00940000154019.a #13	ENSGT00390000006591 #14	ENSGT00940000160473.i #15	ENSGT00940000160473.j #15	ENSGT00940000156760 #16	ENSGT00390000000970.b #17	ENSGT00940000155368 #18	ENSGT00940000164154	ENSGT00940000162647 #20	ENSGT00940000159135 #21	ENSGT00390000018660 #23	ENSGT01100000263515.a.b.a.a #22	ENSGT00940000154287.b #25	ENSGT00730000111251	ENSGT00390000005023.b	ENSGT00550000074911	ENSGT00530000063813.b	ENSGT00530000063813.a	ENSGT00390000011700	ENSGT01030000234621.C.b	ENSGT00390000011127	ENSGT00390000016906	ENSGT00720000110080	ENSGT00390000005823	ENSGT00440000033499	ENSGT00900000141094	ENSGT00940000160146.C
Northern American deer mouse	MODERN SPECIES	19	Strit1 (ENSPEMG00000012153)	Plch1 (ENSPEMG00000003317) #11	E130311K13Rik (ENSPEMG00000024310) #12	Slc33a1 (ENSPEMG00000011599) #13	Gmps (ENSPEMG00000009799) #14	Vmn2r1 (ENSPEMG00000000138) #15	ENSPEMG00000005018 #15	ENSPEMG00000003936	Kcnab1 (ENSPEMG00000020802) #16	Ssr3 (ENSPEMG00000008767) #17	Tiparp (ENSPEMG00000014866) #18	ENSPEMG00000016123	ENSPEMG00000027465 #20	Ccnl1 (ENSPEMG00000000691) #21	Veph1 (ENSPEMG00000020957) #23	Ptx3 (ENSPEMG00000029412) #22	Shox2 (ENSPEMG00000024952) #25	ENSPEMG00000010988	Mlf1 (ENSPEMG00000014175)	Gfm1 (ENSPEMG00000008942)	Lxn (ENSPEMG00000013211)	Rarres1 (ENSPEMG00000020322)	Mfsd1 (ENSPEMG00000022685)	ENSPEMG00000027419	Schip1 (ENSPEMG00000022541)	Il12a (ENSPEMG00000016462)	1110032F04Rik (ENSPEMG00000029770)	Ift80 (ENSPEMG00000016207)	Smc4 (ENSPEMG00000009281)	Trim59 (ENSPEMG00000027017)	Kpna4 (ENSPEMG00000021777)
Prairie vole	MODERN SPECIES		Mme (ENSMOCG00000019325) #9	ENSMOCG00000013919	ENSMOCG00000013101	Plch1 (ENSMOCG00000021300) #11	E130311K13Rik (ENSMOCG00000022255) #12	Slc33a1 (ENSMOCG00000015778) #13	Gmps (ENSMOCG00000021456) #14	Vmn2r1 (ENSMOCG00000016363) #15	ENSMOCG00000018463 #15	Kcnab1 (ENSMOCG00000006596) #16	Ssr3 (ENSMOCG00000000580) #17	Tiparp (ENSMOCG00000011217) #18	ENSMOCG00000001595	Ccnl1 (ENSMOCG00000020951) #21	Veph1 (ENSMOCG00000021347) #23	Ptx3 (ENSMOCG00000022316) #22	Shox2 (ENSMOCG00000018618) #25	Rsrc1 (ENSMOCG00000021372)	Mlf1 (ENSMOCG00000018934)	Gfm1 (ENSMOCG00000000465)	Lxn (ENSMOCG00000011862)	Rarres1 (ENSMOCG00000016080)	Mfsd1 (ENSMOCG00000007444)	Schip1 (ENSMOCG00000005163)	Il12a (ENSMOCG00000006247)	ENSMOCG00000022387	1110032F04Rik (ENSMOCG00000008342)	Ift80 (ENSMOCG00000011935)	Smc4 (ENSMOCG00000020908)	ENSMOCG00000019030	Kpna4 (ENSMOCG00000022257)
Upper Galilee mountains blind mole rat	MODERN SPECIES	991										Kcnab1 (ENSNGAG00000012290) #16	Ssr3 (ENSNGAG00000001726) #17	Tiparp (ENSNGAG00000024372) #18	ENSNGAG00000014628	Ccnl1 (ENSNGAG00000017562) #21	Veph1 (ENSNGAG00000023607) #23	Ptx3 (ENSNGAG00000019190) #22	Shox2 (ENSNGAG00000021490) #25	Rsrc1 (ENSNGAG00000009486)	Mlf1 (ENSNGAG00000005441)	Gfm1 (ENSNGAG00000012375)	Lxn (ENSNGAG00000023491)	Rarres1 (ENSNGAG00000021830)	Mfsd1 (ENSNGAG00000023897)	Iqcj (ENSNGAG00000023171)
Lesser Egyptian jerboa	MODERN SPECIES	47							Kcnab1 (ENSJJAG00000018614) #16	Ssr3 (ENSJJAG00000017278) #17	Tiparp (ENSJJAG00000014369) #18	ENSJJAG00000003128	ENSJJAG00000016465	ENSJJAG00000017620	ENSJJAG00000021019	Ccnl1 (ENSJJAG00000023702) #21	ENSJJAG00000011566	Ptx3 (ENSJJAG00000022554) #22	Veph1 (ENSJJAG00000014528) #23	ENSJJAG00000016473	ENSJJAG00000014616	Shox2 (ENSJJAG00000014041) #25	ENSJJAG00000013277	Rsrc1 (ENSJJAG00000013815)	Mlf1 (ENSJJAG00000016680)	Lxn (ENSJJAG00000013889)	Gfm1 (ENSJJAG00000016447)	Rarres1 (ENSJJAG00000020808)	Mfsd1 (ENSJJAG00000018648)	Iqcj (ENSJJAG00000011023)	ENSJJAG00000019081	Il12a (ENSJJAG00000012071)	1110032F04Rik (ENSJJAG00000010657)
Kangaroo rat	MODERN SPECIES	349	Arhgef26 (ENSDORG00000004847)	Dhx36 (ENSDORG00000004848) #7	Mme (ENSDORG00000005785) #9	Plch1 (ENSDORG00000009727) #11	E130311K13Rik (ENSDORG00000023719) #12	Slc33a1 (ENSDORG00000013954) #13	Gmps (ENSDORG00000014996) #14	ENSDORG00000001855 #15	ENSDORG00000029512 #15	Kcnab1 (ENSDORG00000000796) #16	ENSDORG00000024089 #17	Tiparp (ENSDORG00000013554) #18	ENSDORG00000023530	Ccnl1 (ENSDORG00000008224) #21	Veph1 (ENSDORG00000014560) #23	Ptx3 (ENSDORG00000014563) #22	Shox2 (ENSDORG00000006033) #25	ENSDORG00000014162	Mlf1 (ENSDORG00000014164)	Gfm1 (ENSDORG00000014165)	Lxn (ENSDORG00000014168)	ENSDORG00000026605	Mfsd1 (ENSDORG00000001805)	Iqcj (ENSDORG00000028467)	Schip1 (ENSDORG00000004328)	ENSDORG00000026572	Ift80 (ENSDORG00000002083)	Smc4 (ENSDORG00000002090)	Trim59 (ENSDORG00000002094)	Kpna4 (ENSDORG00000026803)	Ppm1l (ENSDORG00000029270)
Rodentia_A	ANCESTRAL SPECIES	5	ENSGT00390000003715 #8	ENSGT00940000156745 #9	ENSGT00940000166505 #10	ENSGT00940000157185 #11	ENSGT00390000004493 #12	ENSGT00940000154019.a #13	ENSGT00390000006591 #14	ENSGT00940000160473 #15	ENSGT00940000156760 #16	ENSGT00390000000970.b #17	ENSGT00940000155368 #18	ENSGT00940000164154	ENSGT00940000162647 #20	ENSGT00940000159135 #21	ENSGT00390000018660 #23	ENSGT01100000263515.a.b.a.a #22	ENSGT00940000154287.b #25	ENSGT00730000111251	ENSGT00390000005023.b	ENSGT00550000074911	ENSGT00530000063813.b	ENSGT00530000063813.a	ENSGT00390000011700	ENSGT01030000234621.C.b	ENSGT00390000011127	ENSGT00390000016906	ENSGT00720000110080	ENSGT00390000005823	ENSGT00440000033499	ENSGT00900000141094	ENSGT00940000160146.C
Sciuridae	ANCESTRAL SPECIES	26	ENSGT00390000003715 #8	ENSGT00940000156745 #9	ENSGT00940000166505 #10	ENSGT00940000157185 #11	ENSGT00390000004493 #12	ENSGT00940000154019.a #13	ENSGT00390000006591 #14	ENSGT00940000160473 #15	ENSGT00940000156760 #16	ENSGT00390000000970.b #17	ENSGT00940000155368 #18	ENSGT00940000164154	ENSGT00940000162647 #20	ENSGT00940000159135 #21	ENSGT00390000018660 #23	ENSGT01100000263515.a.b.a.a #22	ENSGT00940000154287.b #25	ENSGT00730000111251	ENSGT00390000005023.b	ENSGT00550000074911	ENSGT00530000063813.b	ENSGT00530000063813.a	ENSGT00390000011700	ENSGT01030000234621.C.b	ENSGT00390000011127	ENSGT00390000016906	ENSGT01030000234590.A.b.b	ENSGT01030000234590.A.b.a.b.a	ENSGT01030000234590.A.b.a.b.b	ENSGT00940000155866	ENSGT00390000015458
Marmotini	ANCESTRAL SPECIES	25	ENSGT00940000156745 #9	ENSGT01100000265011	ENSGT01030000235172	ENSGT00940000157185 #11	ENSGT00390000004493 #12	ENSGT00940000154019.a #13	ENSGT00390000006591 #14	ENSGT00940000160473 #15	ENSGT00940000156760 #16	ENSGT00390000000970.b #17	ENSGT00940000155368 #18	ENSGT00940000164154	ENSGT00940000162647 #20	ENSGT00940000159135 #21	ENSGT00390000018660 #23	ENSGT01100000263515.a.b.a.a #22	ENSGT00940000154287.b #25	ENSGT00730000111251	ENSGT00390000005023.b	ENSGT00550000074911	ENSGT00530000063813.b	ENSGT00530000063813.a	ENSGT00390000011700	ENSGT01030000234621.C.b	ENSGT00390000011127	ENSGT00390000016906	ENSGT01030000234590.A.b.b	ENSGT01030000234590.A.b.a.b.a	ENSGT01030000234590.A.b.a.b.b	ENSGT00940000155866	ENSGT00390000015458
Marmotini_b	ANCESTRAL SPECIES	46	ENSGT00390000003715 #8	ENSGT00940000156745 #9	ENSGT01100000265011	ENSGT00940000157185 #11	ENSGT00390000004493 #12	ENSGT00940000154019.a #13	ENSGT00390000006591 #14	ENSGT00940000160473 #15	ENSGT00940000156760 #16	ENSGT00390000000970.b #17	ENSGT00940000155368 #18	ENSGT00940000164154	ENSGT00940000162647 #20	ENSGT00940000159135 #21	ENSGT00390000018660 #23	ENSGT01100000263515.a.b.a.a #22	ENSGT00940000154287.b #25	ENSGT00730000111251	ENSGT00390000005023.b	ENSGT00550000074911	ENSGT00530000063813.b	ENSGT00530000063813.a	ENSGT00390000011700	ENSGT01030000234621.C.b	ENSGT00390000011127	ENSGT00390000016906	ENSGT01030000234590.A.b.b	ENSGT01030000234590.A.b.a.b.a	ENSGT01030000234590.A.b.a.b.b	ENSGT00940000155866	ENSGT00390000015458
Arctic ground squirrel	MODERN SPECIES	111	ENSUPAG00010006817	PLCH1 (ENSUPAG00010006835) #11	ENSUPAG00010007178	C3orf33 (ENSUPAG00010007194) #12	SLC33A1 (ENSUPAG00010007214) #13	GMPS (ENSUPAG00010007230) #14	ENSUPAG00010007272 #15	KCNAB1 (ENSUPAG00010007381) #16	SSR3 (ENSUPAG00010007397) #17	ENSUPAG00010007423	TIPARP (ENSUPAG00010007433) #18	ENSUPAG00010007447	LEKR1 (ENSUPAG00010007452) #20	CCNL1 (ENSUPAG00010007457) #21	VEPH1 (ENSUPAG00010007462) #23	PTX3 (ENSUPAG00010007477) #22	SHOX2 (ENSUPAG00010007482) #25	RSRC1 (ENSUPAG00010007492)	MLF1 (ENSUPAG00010007820)	GFM1 (ENSUPAG00010007852)	LXN (ENSUPAG00010007947)	RARRES1 (ENSUPAG00010007963)	MFSD1 (ENSUPAG00010007976)	ENSUPAG00010007997
Squirrel	MODERN SPECIES	119	GPR149 (ENSSTOG00000003946) #8	MME (ENSSTOG00000000081) #9	ENSSTOG00000030767	PLCH1 (ENSSTOG00000000090) #11	C3orf33 (ENSSTOG00000027383) #12	SLC33A1 (ENSSTOG00000000095) #13	GMPS (ENSSTOG00000026541) #14	ENSSTOG00000011094 #15	KCNAB1 (ENSSTOG00000025723) #16	SSR3 (ENSSTOG00000013773) #17	TIPARP (ENSSTOG00000027682) #18	ENSSTOG00000031297	LEKR1 (ENSSTOG00000026813) #20	CCNL1 (ENSSTOG00000011805) #21	VEPH1 (ENSSTOG00000014695) #23	PTX3 (ENSSTOG00000023681) #22	SHOX2 (ENSSTOG00000010121) #25	RSRC1 (ENSSTOG00000021591)	ENSSTOG00000004812	MLF1 (ENSSTOG00000010142)	GFM1 (ENSSTOG00000010150)	LXN (ENSSTOG00000010168)	RARRES1 (ENSSTOG00000010175)	MFSD1 (ENSSTOG00000010188)	ENSSTOG00000026854	ENSSTOG00000014607	IL12A (ENSSTOG00000014615)	TM4SF4 (ENSSTOG00000010877)	TM4SF1 (ENSSTOG00000025707)	TM4SF18 (ENSSTOG00000026073)	ENSSTOG00000002890
Alpin marmot	MODERN SPECIES	19	PLCH1 (ENSMMMG00000015750) #11	C3orf33 (ENSMMMG00000015801) #12	SLC33A1 (ENSMMMG00000015806) #13	ENSMMMG00000015821	GMPS (ENSMMMG00000015827) #14	ENSMMMG00000015856 #15	KCNAB1 (ENSMMMG00000015897) #16	SSR3 (ENSMMMG00000015908) #17	ENSMMMG00000015911	TIPARP (ENSMMMG00000015913) #18	ENSMMMG00000015928	ENSMMMG00000015936 #20	CCNL1 (ENSMMMG00000015946) #21	ENSMMMG00000015953	VEPH1 (ENSMMMG00000015959) #23	ENSMMMG00000015978 #22	RSRC1 (ENSMMMG00000016000)	MLF1 (ENSMMMG00000016176)	GFM1 (ENSMMMG00000016194)	LXN (ENSMMMG00000016210)	RARRES1 (ENSMMMG00000016234)	MFSD1 (ENSMMMG00000016249)	ENSMMMG00000016261	ENSMMMG00000016266	SCHIP1 (ENSMMMG00000016272)	IL12A (ENSMMMG00000016274)	TM4SF4 (ENSMMMG00000016284)	TM4SF1 (ENSMMMG00000016291)	TM4SF18 (ENSMMMG00000016299)	CP (ENSMMMG00000016360)	HPS3 (ENSMMMG00000016598)
Eurasian red squirrel	MODERN SPECIES	1	ENSSVLG00005006949	MME (ENSSVLG00005006865) #9	STRIT1 (ENSSVLG00005006829) #10	PLCH1 (ENSSVLG00005006514) #11	ENSSVLG00005006455	C3orf33 (ENSSVLG00005006407) #12	SLC33A1 (ENSSVLG00005006332) #13	GMPS (ENSSVLG00005006221) #14	ENSSVLG00005006157 #15	KCNAB1 (ENSSVLG00005005761) #16	ENSSVLG00005005598 #17	TIPARP (ENSSVLG00005005579) #18	LEKR1 (ENSSVLG00005005558) #20	CCNL1 (ENSSVLG00005005434) #21	ENSSVLG00005005378	PTX3 (ENSSVLG00005005353) #22	VEPH1 (ENSSVLG00005005203) #23	SHOX2 (ENSSVLG00005005099) #25	RSRC1 (ENSSVLG00005005040)	MLF1 (ENSSVLG00005004886)	LXN (ENSSVLG00005004800)	GFM1 (ENSSVLG00005015861)	RARRES1 (ENSSVLG00005015785)	MFSD1 (ENSSVLG00005015449)	ENSSVLG00005015377	ENSSVLG00005015250	ENSSVLG00005014764	IL12A (ENSSVLG00005014635)	TM4SF4 (ENSSVLG00005014565)	TM4SF1 (ENSSVLG00005014530)	TM4SF18 (ENSSVLG00005014461)
Hystricomorpha	ANCESTRAL SPECIES	6	ENSGT00390000003715 #8	ENSGT00940000156745 #9	ENSGT00940000166505 #10	ENSGT00940000157185 #11	ENSGT00390000004493 #12	ENSGT00940000154019.a #13	ENSGT00390000006591 #14	ENSGT00940000160473 #15	ENSGT00940000156760 #16	ENSGT00390000000970.b #17	ENSGT00940000155368 #18	ENSGT00940000164154	ENSGT00940000162647 #20	ENSGT00940000159135 #21	ENSGT00390000018660 #23	ENSGT01100000263515.a.b.a.a #22	ENSGT00940000154287.b #25	ENSGT00730000111251	ENSGT00390000005023.b	ENSGT00550000074911	ENSGT00530000063813.b	ENSGT00530000063813.a	ENSGT00390000011700	ENSGT01030000234621.C.b	ENSGT00390000011127	ENSGT00390000016906	ENSGT00720000110080	ENSGT00390000005823	ENSGT00440000033499.b	ENSGT00900000141094	ENSGT00940000160146.C
Naked mole-rat female	MODERN SPECIES	27	ENSHGLG00000019192 #12	SLC33A1 (ENSHGLG00000042989) #13	ENSHGLG00000019482 #14	ENSHGLG00000019405 #15	ENSHGLG00000039018	KCNAB1 (ENSHGLG00000019332) #16	SSR3 (ENSHGLG00000037144) #17	ENSHGLG00000020605	ENSHGLG00000010960 #18	ENSHGLG00000034810	ENSHGLG00000045711	ENSHGLG00000011740	ENSHGLG00000011933 #21	ENSHGLG00000012347	ENSHGLG00000045178	PTX3 (ENSHGLG00000012461) #22	ENSHGLG00000012178 #23	ENSHGLG00000046633	ENSHGLG00000012718	SHOX2 (ENSHGLG00000012846) #25	ENSHGLG00000018168	ENSHGLG00000044928	ENSHGLG00000039235	RSRC1 (ENSHGLG00000018148)	MLF1 (ENSHGLG00000016829)	ENSHGLG00000000559	LXN (ENSHGLG00000033224)	GFM1 (ENSHGLG00000016855)	RARRES1 (ENSHGLG00000049842)	MFSD1 (ENSHGLG00000016907)	ENSHGLG00000021053
Hystricomorpha_a	ANCESTRAL SPECIES	4	ENSGT00390000003715 #8	ENSGT00940000156745 #9	ENSGT00940000166505 #10	ENSGT00940000157185 #11	ENSGT00390000004493 #12	ENSGT00940000154019.a #13	ENSGT00390000006591 #14	ENSGT00940000160473 #15	ENSGT00940000156760 #16	ENSGT00390000000970.b #17	ENSGT00940000155368 #18	ENSGT00940000164154	ENSGT00940000162647 #20	ENSGT00940000159135 #21	ENSGT00390000018660 #23	ENSGT01100000263515.a.b.a.a #22	ENSGT00940000154287.b #25	ENSGT00730000111251	ENSGT00390000005023.b	ENSGT00550000074911	ENSGT00530000063813.b	ENSGT00530000063813.a	ENSGT00390000011700	ENSGT01030000234621.C.b	ENSGT00390000011127	ENSGT00390000016906	ENSGT00390000005823	ENSGT00440000033499.b	ENSGT00900000141094	ENSGT00940000160146.C	ENSGT01050000244891.C.c.a
Guinea pig	MODERN SPECIES	8	MME (ENSCPOG00000007994) #9	STRIT1 (ENSCPOG00000037602) #10	PLCH1 (ENSCPOG00000004751) #11	ENSCPOG00000040284	C3orf33 (ENSCPOG00000035789) #12	SLC33A1 (ENSCPOG00000005212) #13	GMPS (ENSCPOG00000011574) #14	ENSCPOG00000011335 #15	ENSCPOG00000033396	KCNAB1 (ENSCPOG00000004890) #16	SSR3 (ENSCPOG00000037065) #17	TIPARP (ENSCPOG00000000345) #18	ENSCPOG00000025111	ENSCPOG00000031670 #21	VEPH1 (ENSCPOG00000010480) #23	PTX3 (ENSCPOG00000037636) #22	SHOX2 (ENSCPOG00000038435) #25	RSRC1 (ENSCPOG00000000876)	MLF1 (ENSCPOG00000000426)	GFM1 (ENSCPOG00000001194)	LXN (ENSCPOG00000001197)	RARRES1 (ENSCPOG00000037396)	MFSD1 (ENSCPOG00000015291)	ENSCPOG00000015295	SCHIP1 (ENSCPOG00000003961)	Il12a (ENSCPOG00000000016)	ENSCPOG00000026743	SMC4 (ENSCPOG00000006130)	TRIM59 (ENSCPOG00000006122)	KPNA4 (ENSCPOG00000010671)	ARL14 (ENSCPOG00000010678)
Hystricomorpha_b	ANCESTRAL SPECIES	9	ENSGT00390000003715 #8	ENSGT00940000156745 #9	ENSGT00940000166505 #10	ENSGT00940000157185 #11	ENSGT00390000004493 #12	ENSGT00940000154019.a #13	ENSGT00390000006591 #14	ENSGT00940000160473 #15	ENSGT00940000156760 #16	ENSGT00390000000970.b #17	ENSGT00940000155368 #18	ENSGT00940000164154	ENSGT00940000162647 #20	ENSGT00940000159135 #21	ENSGT00390000018660 #23	ENSGT01100000263515.a.b.a.a #22	ENSGT00940000154287.b #25	ENSGT00730000111251	ENSGT00390000005023.b	ENSGT00550000074911	ENSGT00530000063813.b	ENSGT00530000063813.a	ENSGT00390000011700	ENSGT00390000011127	ENSGT00390000016906	ENSGT00390000005823	ENSGT00440000033499.b	ENSGT00900000141094	ENSGT00940000160146.C	ENSGT01050000244891.C.c.a	ENSGT00940000157030
Long-tailed chinchilla	MODERN SPECIES	155	GPR149 (ENSCLAG00000004034) #8	MME (ENSCLAG00000001839) #9	ENSCLAG00000002045	PLCH1 (ENSCLAG00000002471) #11	C3orf33 (ENSCLAG00000004358) #12	SLC33A1 (ENSCLAG00000007266) #13	GMPS (ENSCLAG00000007499) #14	ENSCLAG00000012602 #15	KCNAB1 (ENSCLAG00000012692) #16	SSR3 (ENSCLAG00000002284) #17	TIPARP (ENSCLAG00000002423) #18	ENSCLAG00000002596	ENSCLAG00000002747 #20	ENSCLAG00000002842 #21	VEPH1 (ENSCLAG00000003443) #23	PTX3 (ENSCLAG00000003570) #22	SHOX2 (ENSCLAG00000003167) #25	RSRC1 (ENSCLAG00000003542)	MLF1 (ENSCLAG00000002260)	GFM1 (ENSCLAG00000002503)	LXN (ENSCLAG00000002640)	RARRES1 (ENSCLAG00000002310)	MFSD1 (ENSCLAG00000002835)	ENSCLAG00000003229	ENSCLAG00000004456	IFT80 (ENSCLAG00000004781)	SMC4 (ENSCLAG00000002256)	TRIM59 (ENSCLAG00000017476)	KPNA4 (ENSCLAG00000002716)	PPM1L (ENSCLAG00000002821)	B3GALNT1 (ENSCLAG00000002991)
Degu	MODERN SPECIES	156	ENSODEG00000004144 #11	ENSODEG00000019143	SLC33A1 (ENSODEG00000004913) #13	GMPS (ENSODEG00000005062) #14	ENSODEG00000005195	ENSODEG00000005266 #15	ENSODEG00000006147	KCNAB1 (ENSODEG00000006185) #16	SSR3 (ENSODEG00000006236) #17	TIPARP (ENSODEG00000003454) #18	ENSODEG00000003611	CCNL1 (ENSODEG00000003645) #21	ENSODEG00000019034	ENSODEG00000003686	VEPH1 (ENSODEG00000003728) #23	PTX3 (ENSODEG00000003883) #22	SHOX2 (ENSODEG00000003934) #25	RSRC1 (ENSODEG00000003974)	MLF1 (ENSODEG00000004264)	ENSODEG00000004275	GFM1 (ENSODEG00000004316)	LXN (ENSODEG00000004470)	RARRES1 (ENSODEG00000004496)	ENSODEG00000003386	MFSD1 (ENSODEG00000003463)	ENSODEG00000003705	ENSODEG00000003766	ENSODEG00000003786	IQCJ (ENSODEG00000003870)	ENSODEG00000019016	ENSODEG00000004394