Rodentia_A	ANCESTRAL SPECIES	12	ENSGT00390000017006 #9	ENSGT00940000154487.B #10	ENSGT00940000158612 #11	ENSGT00940000164338	ENSGT00940000161245 #12	ENSGT01030000234637.a.b.b #13	ENSGT00940000153456.b.a #14	ENSGT00940000155306.b	ENSGT00940000156858 #15	ENSGT00940000158160 #16	ENSGT00390000011239 #17	ENSGT01050000244841.A.b.b.a #18	ENSGT00390000004586 #19	ENSGT00550000074907 #20	ENSGT00390000011863.d #21	ENSGT01070000253775.a.d.a.a.a.a #22	ENSGT00510000047522 #23	ENSGT01070000253775.a.d.a.a.a.b #24	ENSGT00550000074844 #25	ENSGT00940000156003 #26	ENSGT00940000162514 #27	ENSGT00940000155419	ENSGT00940000154738.a	ENSGT00940000162392	ENSGT00940000156246	ENSGT00550000075044	ENSGT00940000160513	ENSGT00940000155659	ENSGT00390000010852	ENSGT00390000013347.a	ENSGT00390000010292
Sciuridae	ANCESTRAL SPECIES	7	ENSGT00390000017006 #9	ENSGT00940000154487.B #10	ENSGT00940000158612 #11	ENSGT00940000164338	ENSGT00940000161245 #12	ENSGT01030000234637.a.b.b #13	ENSGT00940000153456.b.a #14	ENSGT00940000155306.b	ENSGT00940000156858 #15	ENSGT00940000158160 #16	ENSGT00390000011239 #17	ENSGT01050000244841.A.b.b.a #18	ENSGT00390000004586 #19	ENSGT00550000074907 #20	ENSGT00390000011863.d #21	ENSGT01070000253775.a.d.a.a.a.a #22	ENSGT00510000047522 #23	ENSGT01070000253775.a.d.a.a.a.b #24	ENSGT00550000074844 #25	ENSGT00940000156003 #26	ENSGT00940000162514 #27	ENSGT00940000155419	ENSGT00940000154738.a	ENSGT00940000162392	ENSGT00940000156246	ENSGT00550000075044	ENSGT00940000160513	ENSGT00940000155659	ENSGT00390000010852	ENSGT00390000013347.a	ENSGT00390000010292
Marmotini	ANCESTRAL SPECIES	35	ENSGT00530000063554.a #8	ENSGT00390000017006 #9	ENSGT00940000154487.B #10	ENSGT00940000158612 #11	ENSGT00940000161245 #12	ENSGT01030000234637.a.b.b.j.b #13	ENSGT00940000153456.b.a #14	ENSGT00940000155306.b	ENSGT00940000156858 #15	ENSGT00940000158160 #16	ENSGT00390000011239 #17	ENSGT01050000244841.A.b.b.a #18	ENSGT00390000004586 #19	ENSGT00550000074907 #20	ENSGT00390000011863.d #21	ENSGT01070000253775.a.d.a.a.a.a #22	ENSGT00510000047522 #23	ENSGT01070000253775.a.d.a.a.a.b #24	ENSGT00550000074844 #25	ENSGT00940000156003 #26	ENSGT00940000162514 #27	ENSGT00940000160243 #28	ENSGT00390000003224.B #29	ENSGT00390000013208 #30	ENSGT00940000153588.a.b #31	ENSGT00940000159122 #32	ENSGT01030000234549.a.a.a.a.b #33	ENSGT01010000222360.E.c #34	ENSGT00940000161477 #35	ENSGT00940000162027 #36	ENSGT00390000014201 #37
Marmotini_b	ANCESTRAL SPECIES	65	ENSGT00530000063554.a #8	ENSGT00390000017006 #9	ENSGT00940000154487.B #10	ENSGT00940000158612 #11	ENSGT00940000161245 #12	ENSGT01030000234637.a.b.b.j.b #13	ENSGT00940000153456.b.a #14	ENSGT00940000155306.b	ENSGT00940000156858 #15	ENSGT00940000158160 #16	ENSGT00390000011239 #17	ENSGT01050000244841.A.b.b.a #18	ENSGT00390000004586 #19	ENSGT00550000074907 #20	ENSGT00390000011863.d #21	ENSGT01070000253775.a.d.a.a.a.a #22	ENSGT00510000047522 #23	ENSGT01070000253775.a.d.a.a.a.b #24	ENSGT00550000074844 #25	ENSGT00940000156003 #26	ENSGT00940000162514 #27	ENSGT00940000160243 #28	ENSGT00390000003224.B #29	ENSGT00390000013208 #30	ENSGT00940000153588.a.b #31	ENSGT00940000159122 #32	ENSGT01030000234549.a.a.a.a.b #33	ENSGT01010000222360.E.c #34	ENSGT00940000161477 #35	ENSGT00940000162027 #36	ENSGT00390000014201 #37
Squirrel	MODERN SPECIES	79	SRPK2 (ENSSTOG00000009624) #7	PUS7 (ENSSTOG00000004974) #8	RINT1 (ENSSTOG00000027679) #9	EFCAB10 (ENSSTOG00000030330) #10	ATXN7L1 (ENSSTOG00000019741) #11	CDHR3 (ENSSTOG00000015541) #12	ENSSTOG00000020871 #13	NAMPT (ENSSTOG00000011874) #14	PIK3CG (ENSSTOG00000001455) #15	PRKAR2B (ENSSTOG00000013835) #16	HBP1 (ENSSTOG00000013846) #17	GPR22 (ENSSTOG00000023580) #18	COG5 (ENSSTOG00000034441) #19	DUS4L (ENSSTOG00000000212) #20	BCAP29 (ENSSTOG00000000215) #21	SLC26A4 (ENSSTOG00000010945) #22	CBLL1 (ENSSTOG00000027668) #23	SLC26A3 (ENSSTOG00000010967) #24	DLD (ENSSTOG00000007445) #25	LAMB1 (ENSSTOG00000007474) #26	LAMB4 (ENSSTOG00000031581) #27	KCP (ENSSTOG00000014371) #28	ATP6V1FNB (ENSSTOG00000024361) #29	ATP6V1F (ENSSTOG00000014368) #30	FLNC (ENSSTOG00000014349) #31	ENSSTOG00000014335 #32	OPN1SW (ENSSTOG00000026017) #33	CALU (ENSSTOG00000022028) #34	GARIN1B (ENSSTOG00000026261) #35	GARIN1A (ENSSTOG00000008506) #36	HILPDA (ENSSTOG00000029766) #37
Arctic ground squirrel	MODERN SPECIES	158	PUS7 (ENSUPAG00010013569) #8	RINT1 (ENSUPAG00010013635) #9	EFCAB10 (ENSUPAG00010013712) #10	ATXN7L1 (ENSUPAG00010013726) #11	CDHR3 (ENSUPAG00010013849) #12	SYPL1 (ENSUPAG00010013864) #13	NAMPT (ENSUPAG00010013886) #14	CCDC71L (ENSUPAG00010013895)	PIK3CG (ENSUPAG00010013897) #15	PRKAR2B (ENSUPAG00010013918) #16	HBP1 (ENSUPAG00010013942) #17	COG5 (ENSUPAG00010014009) #19	GPR22 (ENSUPAG00010014048) #18	DUS4L (ENSUPAG00010014053) #20	BCAP29 (ENSUPAG00010014061) #21	SLC26A4 (ENSUPAG00010014094) #22	CBLL1 (ENSUPAG00010014110) #23	SLC26A3 (ENSUPAG00010014119) #24	DLD (ENSUPAG00010014139) #25	LAMB1 (ENSUPAG00010014182) #26	LAMB4 (ENSUPAG00010014256) #27
Alpin marmot	MODERN SPECIES	22	PUS7 (ENSMMMG00000016818) #8	RINT1 (ENSMMMG00000016771) #9	EFCAB10 (ENSMMMG00000016750) #10	ATXN7L1 (ENSMMMG00000016642) #11	CDHR3 (ENSMMMG00000016617) #12	ENSMMMG00000016611 #13	NAMPT (ENSMMMG00000016600) #14	ENSMMMG00000016594	PIK3CG (ENSMMMG00000016568) #15	PRKAR2B (ENSMMMG00000016559) #16	HBP1 (ENSMMMG00000016540) #17	GPR22 (ENSMMMG00000016530) #18	COG5 (ENSMMMG00000016519) #19	DUS4L (ENSMMMG00000016513) #20	BCAP29 (ENSMMMG00000016504) #21	SLC26A4 (ENSMMMG00000016494) #22	CBLL1 (ENSMMMG00000016477) #23	SLC26A3 (ENSMMMG00000016464) #24	DLD (ENSMMMG00000016446) #25	LAMB1 (ENSMMMG00000016413) #26	LAMB4 (ENSMMMG00000016384) #27	ATP6V1FNB (ENSMMMG00000016351) #29	ATP6V1F (ENSMMMG00000016346) #30	FLNC (ENSMMMG00000016242) #31	CCDC136 (ENSMMMG00000015944) #32	OPN1SW (ENSMMMG00000015924) #33	CALU (ENSMMMG00000015910) #34	GARIN1B (ENSMMMG00000015890) #35	GARIN1A (ENSMMMG00000015879) #36	HILPDA (ENSMMMG00000015877) #37	IMPDH1 (ENSMMMG00000015789)
Eurasian red squirrel	MODERN SPECIES	17	RINT1 (ENSSVLG00005023670) #9	EFCAB10 (ENSSVLG00005023778) #10	ATXN7L1 (ENSSVLG00005023827) #11	ENSSVLG00005023912	CDHR3 (ENSSVLG00005023961) #12	SYPL1 (ENSSVLG00005024028) #13	NAMPT (ENSSVLG00005024062) #14	CCDC71L (ENSSVLG00005024099)	PIK3CG (ENSSVLG00005024115) #15	PRKAR2B (ENSSVLG00005024164) #16	HBP1 (ENSSVLG00005024190) #17	ENSSVLG00005024241 #19	ENSSVLG00005024308 #19	DUS4L (ENSSVLG00005024321) #20	BCAP29 (ENSSVLG00005024352) #21	SLC26A4 (ENSSVLG00005024381) #22	CBLL1 (ENSSVLG00005024459) #23	SLC26A3 (ENSSVLG00005024493) #24	DLD (ENSSVLG00005024580) #25	ENSSVLG00005024645 #26	ENSSVLG00005024749 #26	LAMB4 (ENSSVLG00005024817) #27	NRCAM (ENSSVLG00005025152)	ENSSVLG00005025420	PNPLA8 (ENSSVLG00005008056)	ENSSVLG00005008198	ENSSVLG00005008263	ENSSVLG00005008283	ENSSVLG00005008300	ENSSVLG00005008328	ENSSVLG00005008362
Hystricomorpha	ANCESTRAL SPECIES	14	ENSGT00390000017006 #9	ENSGT00940000154487.B #10	ENSGT00940000158612 #11	ENSGT00940000164338	ENSGT00940000161245 #12	ENSGT01030000234637.a.b.b #13	ENSGT00940000153456.b.a #14	ENSGT00940000155306.b	ENSGT00940000156858 #15	ENSGT00940000158160 #16	ENSGT00390000011239 #17	ENSGT01050000244841.A.b.b.a #18	ENSGT00390000004586 #19	ENSGT00550000074907 #20	ENSGT00390000011863.d #21	ENSGT01070000253775.a.d.a.a.a.a #22	ENSGT00510000047522 #23	ENSGT01070000253775.a.d.a.a.a.b #24	ENSGT00550000074844 #25	ENSGT00940000156003 #26	ENSGT00940000155419	ENSGT00940000154738.a	ENSGT00940000162392	ENSGT00940000156246	ENSGT00550000075044	ENSGT00940000160513	ENSGT00940000155659	ENSGT00390000010852	ENSGT00390000013347.a	ENSGT00390000010292	ENSGT00940000159083
Hystricomorpha_a	ANCESTRAL SPECIES	41	ENSGT00940000154487.B #10	ENSGT00940000158612 #11	ENSGT00940000164338	ENSGT00940000161245 #12	ENSGT01030000234637.a.b.b #13	ENSGT00940000153456.b.a #14	ENSGT00940000155306.b	ENSGT00940000156858 #15	ENSGT00940000158160 #16	ENSGT00390000011239 #17	ENSGT00940000165427	ENSGT00390000004586 #19	ENSGT01050000244841.A.b.b.a #18	ENSGT00550000074907 #20	ENSGT00390000011863.d #21	ENSGT01070000253775.a.d.a.a.a.a #22	ENSGT00510000047522 #23	ENSGT01070000253775.a.d.a.a.a.b #24	ENSGT00550000074844 #25	ENSGT00940000156003 #26	ENSGT00940000155419	ENSGT00940000154738.a	ENSGT00940000162392	ENSGT00940000156246	ENSGT00550000075044	ENSGT00940000160513	ENSGT00940000155659	ENSGT00390000010852	ENSGT00390000013347.a	ENSGT00390000010292	ENSGT00940000159083
Guinea pig	MODERN SPECIES	31	SRPK2 (ENSCPOG00000001335) #7	PUS7 (ENSCPOG00000004705) #8	RINT1 (ENSCPOG00000004708) #9	EFCAB10 (ENSCPOG00000004713) #10	ATXN7L1 (ENSCPOG00000025877) #11	CDHR3 (ENSCPOG00000038402) #12	SYPL1 (ENSCPOG00000039315) #13	NAMPT (ENSCPOG00000009226) #14	PIK3CG (ENSCPOG00000013433) #15	PRKAR2B (ENSCPOG00000002372) #16	HBP1 (ENSCPOG00000002375) #17	ENSCPOG00000025476	COG5 (ENSCPOG00000002378) #19	DUS4L (ENSCPOG00000002384) #20	BCAP29 (ENSCPOG00000002386) #21	SLC26A4 (ENSCPOG00000002391) #22	CBLL1 (ENSCPOG00000006196) #23	SLC26A3 (ENSCPOG00000014568) #24	ENSCPOG00000005312 #25	LAMB1 (ENSCPOG00000013175) #26	NRCAM (ENSCPOG00000006412)	PNPLA8 (ENSCPOG00000007525)	ENSCPOG00000024304	THAP5 (ENSCPOG00000030486)	DNAJB9 (ENSCPOG00000038956)	LRRN3 (ENSCPOG00000006634)	IMMP2L (ENSCPOG00000008217)	DOCK4 (ENSCPOG00000012432)	ZNF277 (ENSCPOG00000024990)	IFRD1 (ENSCPOG00000004793)	LSMEM1 (ENSCPOG00000004797)
Hystricomorpha_b	ANCESTRAL SPECIES	39	ENSGT00390000017006 #9	ENSGT00940000154487.B #10	ENSGT00940000158612 #11	ENSGT00940000164338	ENSGT00940000161245 #12	ENSGT01030000234637.a.b.b #13	ENSGT00940000153456.b.a #14	ENSGT00940000155306.b	ENSGT00940000156858 #15	ENSGT00940000158160 #16	ENSGT00390000011239 #17	ENSGT00390000004586 #19	ENSGT01050000244841.A.b.b.a #18	ENSGT00550000074907 #20	ENSGT00390000011863.d #21	ENSGT01070000253775.a.d.a.a.a.a #22	ENSGT00510000047522 #23	ENSGT01070000253775.a.d.a.a.a.b #24	ENSGT00550000074844 #25	ENSGT00940000156003 #26	ENSGT00940000155419	ENSGT00940000154738.a	ENSGT00940000162392	ENSGT00940000156246	ENSGT00550000075044	ENSGT00940000160513	ENSGT00940000155659	ENSGT00390000010852	ENSGT00390000013347.a	ENSGT00390000010292	ENSGT00940000159083
Long-tailed chinchilla	MODERN SPECIES	117	PUS7 (ENSCLAG00000005275) #8	RINT1 (ENSCLAG00000005086) #9	EFCAB10 (ENSCLAG00000006278) #10	ATXN7L1 (ENSCLAG00000012545) #11	ENSCLAG00000012657	CDHR3 (ENSCLAG00000008682) #12	SYPL1 (ENSCLAG00000009703) #13	NAMPT (ENSCLAG00000004981) #14	PIK3CG (ENSCLAG00000006419) #15	PRKAR2B (ENSCLAG00000007755) #16	HBP1 (ENSCLAG00000005170) #17	COG5 (ENSCLAG00000005871) #19	GPR22 (ENSCLAG00000007346) #18	DUS4L (ENSCLAG00000012135) #20	BCAP29 (ENSCLAG00000014204) #21	SLC26A4 (ENSCLAG00000016035) #22	CBLL1 (ENSCLAG00000006401) #23	SLC26A3 (ENSCLAG00000006307) #24	DLD (ENSCLAG00000006284) #25	LAMB1 (ENSCLAG00000008304) #26	NRCAM (ENSCLAG00000005448)	PNPLA8 (ENSCLAG00000014342)	THAP5 (ENSCLAG00000004720)	DNAJB9 (ENSCLAG00000005011)	IMMP2L (ENSCLAG00000005360)	LRRN3 (ENSCLAG00000009146)	DOCK4 (ENSCLAG00000014437)	ZNF277 (ENSCLAG00000006282)	ENSCLAG00000004463	LSMEM1 (ENSCLAG00000005373)	ENSCLAG00000006855
Degu	MODERN SPECIES	109	ENSODEG00000002991	CDHR3 (ENSODEG00000002812) #12	SYPL1 (ENSODEG00000001969) #13	ENSODEG00000001918 #14	CCDC71L (ENSODEG00000001887)	ENSODEG00000001876 #15	ENSODEG00000001816	ENSODEG00000001789	PRKAR2B (ENSODEG00000001356) #16	ENSODEG00000001327 #17	GPR22 (ENSODEG00000001302) #18	ENSODEG00000001284	COG5 (ENSODEG00000001169) #19	DUS4L (ENSODEG00000001582) #20	ENSODEG00000001457 #21	SLC26A4 (ENSODEG00000001172) #22	ENSODEG00000018679	ENSODEG00000001115 #23	SLC26A3 (ENSODEG00000000813) #24	ENSODEG00000000753	ENSODEG00000000746	DLD (ENSODEG00000000733) #25	LAMB1 (ENSODEG00000000690) #26	ENSODEG00000000666	ENSODEG00000000647	ENSODEG00000000630	PNPLA8 (ENSODEG00000002289)
Naked mole-rat female	MODERN SPECIES	5	ATXN7L1 (ENSHGLG00000007244) #11	CDHR3 (ENSHGLG00000046729) #12	ENSHGLG00000009072 #13	ENSHGLG00000007413 #14	ENSHGLG00000020447	ENSHGLG00000045365	ENSHGLG00000037655	PIK3CG (ENSHGLG00000010038) #15	PRKAR2B (ENSHGLG00000005805) #16	HBP1 (ENSHGLG00000019188) #17	GPR22 (ENSHGLG00000011203) #18	COG5 (ENSHGLG00000007552) #19	ENSHGLG00000018976 #20	ENSHGLG00000033753	BCAP29 (ENSHGLG00000038167) #21	SLC26A4 (ENSHGLG00000015693) #22	CBLL1 (ENSHGLG00000005878) #23	SLC26A3 (ENSHGLG00000009948) #24	DLD (ENSHGLG00000007297) #25	LAMB1 (ENSHGLG00000008431) #26	ENSHGLG00000042517	ENSHGLG00000046637 #27	ENSHGLG00000047313	ENSHGLG00000011069	ENSHGLG00000048059	NRCAM (ENSHGLG00000006695)	ENSHGLG00000016141	ENSHGLG00000047483	THAP5 (ENSHGLG00000040131)	DNAJB9 (ENSHGLG00000036548)	ENSHGLG00000040202