Bilateria DUPLICATION Bilateria ANCESTRAL SPECIES 1 ENSGT01060000248528.b ENSGT01100000263559.B #32 ENSGT01100000263569.a.b.b ENSGT00940000164494 ENSGT01060000248528.a.b.a.a.a.b ENSGT01100000263559.A #25 Chordata ANCESTRAL SPECIES 1 ENSGT01060000248528.b ENSGT01100000263559.B #32 ENSGT01100000263569.a.b.b ENSGT00940000164494 ENSGT01060000248528.a.b.a.a.a.b ENSGT01100000263559.A #25 Vertebrata ANCESTRAL SPECIES 31 ENSGT01100000263569.a.b.b ENSGT00940000164494 ENSGT01060000248528.a.b.a.a.a.b ENSGT01100000263559.B #32 ENSGT01060000248528.b Gnathostomata ANCESTRAL SPECIES 345 ENSGT01060000248528.b ENSGT01100000263559.B #32 ENSGT01100000263569.a.b.b ENSGT00940000164494 ENSGT01060000248528.a.b.a.a.a.b ENSGT01100000263559.A #25 ENSGT00940000153118 ENSGT01100000263506.a #14 ENSGT00990000203553.c.a.b #10 ENSGT01020000230360.d ##31 Euteleostomi ANCESTRAL SPECIES 237 ENSGT01100000263569.a.b.b ENSGT00940000164494 ENSGT01060000248528.a.b.a.a.a.b ENSGT01100000263559.B #32 ENSGT01060000248528.b ENSGT01100000263506.a #14 ENSGT01100000263567.a.a #35 ENSGT00940000155501.b ENSGT00390000009083 ENSGT01020000230360.c.b.a.b.b.d ##31 ENSGT01100000263474.a.a ##36 ENSGT01100000263514.A.e.a ENSGT01100000263474.a.b.b ##36 ENSGT00950000183089 #37 ENSGT01100000263474.a.b.a #36 ENSGT00990000203553.c.a.a.a.b ##28 Actinopterygii ANCESTRAL SPECIES 663 ENSGT01100000263569.a.b.b ENSGT00940000164494 ENSGT01060000248528.a.b.a.a.a.b ENSGT01100000263559.B #32 Neopterygii ANCESTRAL SPECIES 527 ENSGT01100000263569.a.b.b ENSGT00940000164494 ENSGT01060000248528.a.b.a.a.a.b ENSGT01100000263559.B #32 Osteoglossocephalai ANCESTRAL SPECIES 442 ENSGT01100000263567.a.b.b ##35 ENSGT01020000230360.c.b.a.a.a.a.b.b ##31 ENSGT00990000203553.c.a.a.a.b ##28 ENSGT01100000263474.a.b.a.b.a #36 ENSGT00950000183089.c.a #37 ENSGT01100000263559.B #32 Clupeocephala ANCESTRAL SPECIES 535 ENSGT01100000263474.a.b.a.b.a.c.a.b.b.a.a.a.a #36 ENSGT01100000263504.a.b.b.b.a.a ENSGT01100000263474.a.b.b.o.b ##36 ENSGT01100000263559.B #32 ENSGT00940000153092 Euteleosteomorpha ANCESTRAL SPECIES 371 ENSGT01100000263474.a.b.a.b.a.c.a.b.b.a.a.a.a #36 ENSGT01100000263504.a.b.b.b.a.a ENSGT01100000263474.a.b.b.o.b ##36 ENSGT01100000263559.B #32 ENSGT01100000263506.a.d #14 ENSGT01100000263567.a.a.d.b ##35 ENSGT01100000263569.a.b.b.e.b Protacanthopterygii ANCESTRAL SPECIES ENSGT01100000263559.B #32 Northern pike DUPLICATION Northern pike MODERN SPECIES 27 ENSELUG00000034136 #7 ENSELUG00000032145 #8 ENSELUG00000030187 #9 ENSELUG00000001737 #10 ENSELUG00000025166 #11 ENSELUG00000031217 #12 ENSELUG00000026011 #13 ENSELUG00000033473 #14 ENSELUG00000024924 #15 ENSELUG00000032951 #16 ENSELUG00000031155 #17 ENSELUG00000033583 #18 ENSELUG00000034551 #19 ENSELUG00000032686 #20 ENSELUG00000025616 #21 hist2h3c (ENSELUG00000025164) #22 ENSELUG00000030790 #23 ENSELUG00000031278 #24 ENSELUG00000032875 #25 ENSELUG00000031995 #26 ENSELUG00000032921 #27 ENSELUG00000030394 #28 ENSELUG00000028671 #29 ENSELUG00000031902 #30 ENSELUG00000034593 #31 ENSELUG00000031097 #32 ENSELUG00000024636 #33 ENSELUG00000028816 #34 ENSELUG00000027817 #35 ENSELUG00000030940 #36 ENSELUG00000025623 #37 Northern pike MODERN SPECIES 27 ENSELUG00000031155 #17 ENSELUG00000033583 #18 ENSELUG00000034551 #19 ENSELUG00000032686 #20 ENSELUG00000025616 #21 hist2h3c (ENSELUG00000025164) #22 ENSELUG00000030790 #23 ENSELUG00000031278 #24 ENSELUG00000032875 #25 ENSELUG00000031995 #26 ENSELUG00000032921 #27 ENSELUG00000030394 #28 ENSELUG00000028671 #29 ENSELUG00000031902 #30 ENSELUG00000034593 #31 ENSELUG00000031097 #32 ENSELUG00000024636 #33 ENSELUG00000028816 #34 ENSELUG00000027817 #35 ENSELUG00000030940 #36 ENSELUG00000025623 #37 ENSELUG00000031904 ##32 Acanthomorphata ANCESTRAL SPECIES 231 ENSGT01100000263567.a.b.b ##35 ENSGT00990000203553.c.a.a.b.b.b ##28 ENSGT01100000263504.a.b.b.b.a.b ENSGT01100000263474.a.b.a.b.b.b.a.b.b.a ##36 ENSGT01100000263504.a.b.b.b.b ENSGT01100000263559.A #25 ENSGT01020000230360.c.b.a.a.a.a.b.a.a.a.b.b ##31 ENSGT00990000203553.c.a.a.a.a.b #26 ENSGT01100000263474.a.b.b.o.a.a ##36 ENSGT00950000183089.c.a #37 ENSGT01100000263474.a.b.a.b.a.d ##36 ENSGT00990000203553.c.a.a.b.a.a.a.a.b ##28 ENSGT01100000263504.a.b.b.b.a.a ENSGT01100000263474.a.b.b.o.b ##36 ENSGT01100000263559.B #32 ENSGT00940000153092 Cod DUPLICATION Cod MODERN SPECIES 11 spsb3a (ENSGMOG00000017939) mrps34 (ENSGMOG00000028328) nme3 (ENSGMOG00000003474) mapk8ip3 (ENSGMOG00000003414) jpt2 (ENSGMOG00000036879) ENSGMOG00000030019 ENSGMOG00000003340 tmem11 (ENSGMOG00000003334) ENSGMOG00000003322 ENSGMOG00000003296 ENSGMOG00000027126 ##31 ENSGMOG00000037144 ##31 ENSGMOG00000033887 ##28 ENSGMOG00000023244 ##36 ENSGMOG00000022179 #37 ENSGMOG00000023058 #32 ENSGMOG00000032444 ##31 ENSGMOG00000032942 #26 ENSGMOG00000002829 #37 ENSGMOG00000028801 ##31 ENSGMOG00000033765 ENSGMOG00000030436 ##36 ENSGMOG00000037006 ##36 ENSGMOG00000018225 ENSGMOG00000007302 nlk1 (ENSGMOG00000001747) ENSGMOG00000001761 cdipt (ENSGMOG00000001781) ENSGMOG00000031370 ENSGMOG00000029501 ENSGMOG00000005347 Cod MODERN SPECIES 17 zdhhc17 (ENSGMOG00000006985) OSBPL8 (ENSGMOG00000012772) phlda1 (ENSGMOG00000002459) ENSGMOG00000007144 ENSGMOG00000018046 ENSGMOG00000018073 ENSGMOG00000018088 ENSGMOG00000022240 ENSGMOG00000002469 PMPCB (ENSGMOG00000003425) DNAJC2 (ENSGMOG00000003391) PSMC2 (ENSGMOG00000003361) SLC26A5 (ENSGMOG00000003319) ENSGMOG00000024111 ENSGMOG00000022967 ##36 ENSGMOG00000029457 #32 ENSGMOG00000001365 ENSGMOG00000024848 ENSGMOG00000024632 ENSGMOG00000000720 ENSGMOG00000009446 ENSGMOG00000009458 ENSGMOG00000030522 ##35 ENSGMOG00000034473 ##36 ENSGMOG00000025404 ENSGMOG00000030396 ##31 ENSGMOG00000019887 ENSGMOG00000025782 ENSGMOG00000014645 lsm8 (ENSGMOG00000034521) ENSGMOG00000005276 Euacanthomorphacea ANCESTRAL SPECIES 136 ENSGT01020000230360.c.b.a.b.b.d.a.a ##31 ENSGT01100000263504.a.b.b.b.b ENSGT01100000263559.A #25 ENSGT01020000230360.c.b.a.a.a.a.b.a.a.a.b.b ##31 ENSGT00990000203553.c.a.a.a.a.b #26 ENSGT01100000263474.a.b.b.o.a.a ##36 ENSGT00950000183089.c.a.k.a #37 ENSGT00990000203553.c.a.a.b.a.a.a.a.b ##28 ENSGT01100000263504.a.b.b.b.a.a ENSGT01100000263474.a.b.b.o.b ##36 ENSGT01100000263559.B #32 ENSGT00940000153092 Percomorphaceae ANCESTRAL SPECIES 89 ENSGT01020000230360.c.b.a.b.a.b.c.b.b ##31 ENSGT01100000263514.A.f.w.b ENSGT00950000183089.c.b ##37 ENSGT00990000203553.c.a.a.a.a.b #26 ENSGT01100000263474.a.b.b.o.a.a ##36 ENSGT00950000183089.c.a.k.a #37 ENSGT00990000203553.c.a.a.b.a.a.a.a.b.n ##28 ENSGT01100000263504.a.b.b.b.a.a ENSGT01100000263474.a.b.b.o.b ##36 ENSGT01100000263559.B #32 ENSGT00940000153092 ENSGT01100000263504.a.b.b.b.a.b ENSGT00990000203553.c.a.a.b.b.b ##28 ENSGT01100000263567.a.b.b ##35 ENSGT00990000203553.c.a.a.b.a.a.a.a.b.m.a ##28 ENSGT01100000263474.a.b.a.b.a.d ##36 ENSGT00950000183089.c.a.k.b.b #37 ENSGT01100000263567.a.a.d.b ##35 ENSGT01100000263506.a.d #14 ENSGT01060000248528.b ENSGT01100000263514.A.e.a ENSGT00940000156944.a.a ENSGT00940000170476 ENSGT00940000163509.a.b Percomorphaceae_B ANCESTRAL SPECIES 10 ENSGT00940000165075.a.a ENSGT00940000175327 ENSGT00670000098179.d.a ENSGT00530000063371.C.a ENSGT00940000164705 ENSGT00390000010712 ENSGT00940000156835.k ENSGT00940000161176 ENSGT00550000074939 ENSGT00940000163701.b.a.b.b.b ENSGT00940000163509.a.b ENSGT00940000170476 ENSGT00940000156944.a.a ENSGT01020000230360.d ##31 ENSGT01100000263474.a.b.b.o.b.a ##36 ENSGT01100000263559.B #32 ENSGT00940000153092 ENSGT00390000000002.a.a.b ENSGT00390000001803 ENSGT00940000155150.b.b ENSGT00390000000703 ENSGT00950000182994.A ENSGT00390000001134.b.ab ENSGT01100000263483.E.a.c.a ENSGT01100000263483.F.a ENSGT01100000263483.E.a.c.b ENSGT00390000001134.b.`b.a ENSGT00940000165879 ENSGT00390000006178 ENSGT00940000178567 ENSGT00940000157138.b Percomorphaceae_C ANCESTRAL SPECIES 43 ENSGT01020000230360.c.b.a.b.b.d.b.a.a ##31 ENSGT00990000203553.c.a.a.a.a.a ##28 ENSGT00950000183089.c.a.k.b.a.a #37 ENSGT01100000263559.B #32 ENSGT00940000153092 Percomorphaceae_D ANCESTRAL SPECIES ENSGT01100000263559.B #32 Anabantaria ANCESTRAL SPECIES ENSGT01100000263559.B #32 Anabantoidei ANCESTRAL SPECIES ENSGT01100000263559.B #32 Climbing perch MODERN SPECIES 13 ENSATEG00000018958 SLC39A8 (ENSATEG00000018981) manba (ENSATEG00000019029) ube2d3 (ENSATEG00000019090) ENSATEG00000019100 ENSATEG00000019114 ENSATEG00000019160 ENSATEG00000019177 MTARC2 (ENSATEG00000026060) ENSATEG00000026817 ezra (ENSATEG00000019236) nenf (ENSATEG00000019292) pacc1 (ENSATEG00000019312) ENSATEG00000027828 ##36 ENSATEG00000019397 #37 ENSATEG00000028625 #32 ENSATEG00000026927 ##28 ENSATEG00000028037 ENSATEG00000027307 ENSATEG00000027028 ENSATEG00000027301 ZNF106 (ENSATEG00000019498) CAPN3 (ENSATEG00000019530) GANC (ENSATEG00000019583) TMEM87A (ENSATEG00000019615) VPS39 (ENSATEG00000019651) GALNT16 (ENSATEG00000019745) ENSATEG00000019775 EXD2 (ENSATEG00000019834) ENSATEG00000019845 ENSATEG00000019883 Eupercaria DUPLICATION Eupercaria DUPLICATION Eupercaria ANCESTRAL SPECIES ENSGT01100000263559.B.kf.a #32 Tetraodontidae ANCESTRAL SPECIES ENSGT01100000263559.B.kf.a #32 Tetraodon MODERN SPECIES 26 angel2 (ENSTNIG00000006802) vegfab (ENSTNIG00000009142) ENSTNIG00000008862 KCNH2 (ENSTNIG00000008782) ENSTNIG00000000924 ENSTNIG00000008781 ENSTNIG00000000071 aoc1 (ENSTNIG00000008780) ENSTNIG00000008779 SLC12A7 (ENSTNIG00000008778) ENSTNIG00000008777 ENSTNIG00000008776 ENSTNIG00000001078 si:dkey-23a13.17 (ENSTNIG00000008775) #37 ENSTNIG00000008774 ##31 hist2h3c (ENSTNIG00000008773) #32 ENSTNIG00000008772 GFOD1 (ENSTNIG00000008771) KIF5B (ENSTNIG00000008770) ARHGAP12 (ENSTNIG00000008769) zeb1b (ENSTNIG00000008768) znf438 (ENSTNIG00000008767) ENSTNIG00000008766 pomp (ENSTNIG00000008765) ENSTNIG00000008764 ENSTNIG00000008763 ENSTNIG00000008762 NSMAF (ENSTNIG00000008761) ENSTNIG00000000016 ENSTNIG00000008760 SLC22A17 (ENSTNIG00000008759) Eupercaria ANCESTRAL SPECIES ENSGT01100000263559.B.kf.b #32 Eupecaria_A ANCESTRAL SPECIES 88 ENSGT00990000203553.c.a.a.b.b.a.a.a.a.a.a.a.b ##28 ENSGT01020000230360.c.b.a.a.a.a.b.a.a.a.b.b ##31 ENSGT01100000263559.B.kf.b #32 Eupecaria_B ANCESTRAL SPECIES 89 ENSGT00990000203553.c.a.a.b.b.a.a.a.a.a.a.a.b ##28 ENSGT01020000230360.c.b.a.a.a.a.b.a.a.a.b.b ##31 ENSGT01100000263559.B.kf.b #32 Eupecaria_C ANCESTRAL SPECIES 121 ENSGT00990000203553.c.a.a.b.b.a.a.a.a.a.a.a.b ##28 ENSGT01020000230360.c.b.a.a.a.a.b.a.a.a.b.b ##31 ENSGT01100000263559.B.kf.b #32 Eupercaria_incertae_sedis ANCESTRAL SPECIES 152 ENSGT00990000203553.c.a.a.b.b.a.a.a.a.a.a.a.b ##28 ENSGT01020000230360.c.b.a.a.a.a.b.a.a.a.b.b ##31 ENSGT01100000263559.B.kf.b #32 European seabass MODERN SPECIES 20 ENSDLAG00005021846 ENSDLAG00005022388 ENSDLAG00005022420 ENSDLAG00005022475 ENSDLAG00005022481 ENSDLAG00005030440 ##28 ENSDLAG00005030509 #37 ENSDLAG00005034529 ##36 ENSDLAG00005029295 ENSDLAG00005020580 ENSDLAG00005033212 ##36 ENSDLAG00005032920 ##28 ENSDLAG00005026756 ENSDLAG00005004752 ##36 ENSDLAG00005032305 ENSDLAG00005026477 #32 ENSDLAG00005022566 map2k7 (ENSDLAG00005023630) ENSDLAG00005023678 si:ch211-214c7.5 (ENSDLAG00005023995) ENSDLAG00005023998 mcoln1a (ENSDLAG00005024028) ENSDLAG00005024396 ENSDLAG00005015356 ENSDLAG00005030621 ENSDLAG00005030658 ENSDLAG00005029691 ENSDLAG00005034838 ENSDLAG00005015380 ENSDLAG00005024431 ENSDLAG00005024565 Large yellow croaker MODERN SPECIES 481 casp3a (ENSLCRG00005018141) STOX2 (ENSLCRG00005018142) tll1 (ENSLCRG00005018147) cpe (ENSLCRG00005018297) msmo1 (ENSLCRG00005018343) KLHL2 (ENSLCRG00005018351) med28 (ENSLCRG00005018669) ENSLCRG00005018674 ENSLCRG00005018858 ENSLCRG00005018860 ENSLCRG00005018862 ##36 ENSLCRG00005018863 ENSLCRG00005018864 ##28 ENSLCRG00005018865 ENSLCRG00005018867 ##31 ENSLCRG00005018868 #32 SLC25A38 (ENSLCRG00005018870) ENSLCRG00005018872 ttc26 (ENSLCRG00005018878) ubn2a (ENSLCRG00005019003) ENSLCRG00005019048 cygb2 (ENSLCRG00005002407) SPHK1 (ENSLCRG00005002415) UBE2O (ENSLCRG00005002453) aanat1 (ENSLCRG00005003294) RHBDF2 (ENSLCRG00005003314) acox1 (ENSLCRG00005004566) ten1 (ENSLCRG00005007788) evpla (ENSLCRG00005007792) srp68 (ENSLCRG00005007813) POLG2 (ENSLCRG00005008140) Tetraodontidae ANCESTRAL SPECIES ENSGT01100000263559.B.kf.b #32 Tetraodon DUPLICATION Tetraodon MODERN SPECIES 26 dph2 (ENSTNIG00000008756) zgc:165532 (ENSTNIG00000008755) rgs9bp (ENSTNIG00000008754) zgc:56231 (ENSTNIG00000008753) RPS20 (ENSTNIG00000001523) ANKS6 (ENSTNIG00000008752) ENSTNIG00000008751 pigm (ENSTNIG00000008750) serpinb1l3 (ENSTNIG00000008749) snx16 (ENSTNIG00000008748) ENSTNIG00000001285 WWP1 (ENSTNIG00000008747) ENSTNIG00000008746 ENSTNIG00000008745 ENSTNIG00000008744 #37 ENSTNIG00000008743 #32 cpne3 (ENSTNIG00000008742) rmdn1 (ENSTNIG00000008741) ENSTNIG00000008740 ENSTNIG00000001014 abca4a (ENSTNIG00000008739) ENSTNIG00000008738 ENSTNIG00000008736 ENSTNIG00000008734 #37 cpne3 (ENSTNIG00000008732) cpne3 (ENSTNIG00000008731) idi1 (ENSTNIG00000008730) wdr37 (ENSTNIG00000008729) ADARB2 (ENSTNIG00000008728) PFKP (ENSTNIG00000008727) klf6a (ENSTNIG00000008726) Tetraodon MODERN SPECIES 26 svopl (ENSTNIG00000003457) mical3b (ENSTNIG00000003458) lta4h (ENSTNIG00000003351) dennd6b (ENSTNIG00000003350) gcc1 (ENSTNIG00000003349) arf5 (ENSTNIG00000003348) lamtor4 (ENSTNIG00000001997) atp6v1f (ENSTNIG00000001217) tnpo3 (ENSTNIG00000003347) irf5 (ENSTNIG00000003346) fbxo7 (ENSTNIG00000003345) kiaa0930 (ENSTNIG00000003344) nup50 (ENSTNIG00000003343) KCNA1 (ENSTNIG00000002493) KCNA5 (ENSTNIG00000000276) ENSTNIG00000002494 #32 ENSTNIG00000002495 ##31 CNOT2 (ENSTNIG00000002496) KCNMB4 (ENSTNIG00000002497) ptprb (ENSTNIG00000002498) PTPRR (ENSTNIG00000002499) ENSTNIG00000002500 rab21 (ENSTNIG00000002501) cand1 (ENSTNIG00000006486) ENSTNIG00000006485 ENSTNIG00000006484 ENSTNIG00000001329 ENSTNIG00000006482 ECHDC3 (ENSTNIG00000001958) kcnj8 (ENSTNIG00000006480) abcc9 (ENSTNIG00000006479) Fugu MODERN SPECIES 1 mpp7a (ENSTRUG00000004016) ENSTRUG00000028053 ODAD2 (ENSTRUG00000004452) ENSTRUG00000031405 ENSTRUG00000030866 rab18a (ENSTRUG00000004984) mkxa (ENSTRUG00000004560) itgb1a (ENSTRUG00000004551) nrp1a (ENSTRUG00000002836) ENSTRUG00000002885 ENSTRUG00000029964 ENSTRUG00000028907 ENSTRUG00000029393 ENSTRUG00000012047 #15 ENSTRUG00000028313 ##31 ENSTRUG00000027909 #32 ENSTRUG00000029713 ##28 ENSTRUG00000031791 ENSTRUG00000031069 ENSTRUG00000027530 CUL2 (ENSTRUG00000011837) CCNY (ENSTRUG00000027825) GJD4 (ENSTRUG00000020169) fzd8a (ENSTRUG00000011564) klf6a (ENSTRUG00000021570) PFKP (ENSTRUG00000011032) ADARB2 (ENSTRUG00000010848) wdr37 (ENSTRUG00000010707) idi1 (ENSTRUG00000010615) cpne3 (ENSTRUG00000009713) cpne3 (ENSTRUG00000021775) Eupercaria ANCESTRAL SPECIES 56 ENSGT01020000230360.c.b.a.b.b.d.b.a.a ##31 ENSGT00990000203553.c.a.a.a.a.a ##28 ENSGT00950000183089.c.a.k.b.a.a #37 ENSGT01100000263559.B.lf #32 ENSGT00940000153092 Eupecaria_A ANCESTRAL SPECIES 57 ENSGT01100000263569.a.b.b.f ENSGT00940000164494 ENSGT01060000248528.a.b.a.a.a.b ENSGT01100000263559.B.lf #32 Eupecaria_B ANCESTRAL SPECIES 52 ENSGT01100000263569.a.b.b.f ENSGT00940000164494 ENSGT01060000248528.a.b.a.a.a.b ENSGT01100000263559.B.lf #32 Eupecaria_C ANCESTRAL SPECIES ENSGT01100000263559.B.lf #32 Eupercaria_incertae_sedis ANCESTRAL SPECIES ENSGT01100000263559.B.lf #32 Large yellow croaker MODERN SPECIES 491 gpr22a (ENSLCRG00005012646) ENSLCRG00005012649 ENSLCRG00005012650 rab21 (ENSLCRG00005012651) KCNMB4 (ENSLCRG00005012653) ENSLCRG00005012658 PTPRR (ENSLCRG00005012683) ENSLCRG00005013153 ENSLCRG00005013157 ENSLCRG00005013175 ENSLCRG00005013176 ENSLCRG00005013177 #14 ENSLCRG00005013178 ##31 ENSLCRG00005013182 ##37 ENSLCRG00005013184 ENSLCRG00005013185 #32 KCNA5 (ENSLCRG00005013188) KCNA1 (ENSLCRG00005013189) ENSLCRG00005013190 ARHGAP8 (ENSLCRG00005013192) ENSLCRG00005013194 nup50 (ENSLCRG00005013195) kiaa0930 (ENSLCRG00005013198) fbxo7 (ENSLCRG00005013243) RTCB (ENSLCRG00005013246) xpot (ENSLCRG00005013248) rpl18a (ENSLCRG00005013251) ENSLCRG00005013259 pthlha (ENSLCRG00005013301) C11orf98 (ENSLCRG00005013303) ENSLCRG00005013306 Perciformes ANCESTRAL SPECIES 74 ENSGT01100000263569.a.b.b.f ENSGT00940000164494 ENSGT01060000248528.a.b.a.a.a.b ENSGT01100000263559.B.lf #32 Perciformes_a ANCESTRAL SPECIES ENSGT01100000263559.B.lf #32 Pike perch MODERN SPECIES 157 ENSSLUG00000017045 ##36 ENSSLUG00000016937 ENSSLUG00000016927 ##28 ENSSLUG00000016921 ##36 ENSSLUG00000016918 ##31 ENSSLUG00000016914 ##35 ENSSLUG00000016907 steap4 (ENSSLUG00000016831) ENSSLUG00000016787 ENSSLUG00000016727 ENSSLUG00000016714 ENSSLUG00000016707 ENSSLUG00000016703 ##36 ENSSLUG00000016697 ##36 ENSSLUG00000016695 ##31 ENSSLUG00000016691 #32 svbp (ENSSLUG00000016684) wnt7aa (ENSSLUG00000016680) ptpdc1a (ENSSLUG00000016668) barx1 (ENSSLUG00000016661) phf2 (ENSSLUG00000016581) FAM120A (ENSSLUG00000016526) CASS4 (ENSSLUG00000016507) cstf1 (ENSSLUG00000016501) ENSSLUG00000016494 ENSSLUG00000016486 pdrg1 (ENSSLUG00000016480) ENSSLUG00000016477 aldh1l1 (ENSSLUG00000016151) ENSSLUG00000016125 ENSSLUG00000016106 Cottioidei ANCESTRAL SPECIES 111 ENSGT01100000263569.a.b.b.f ENSGT00940000164494 ENSGT01060000248528.a.b.a.a.a.b ENSGT01100000263559.B.lf #32 Stickleback MODERN SPECIES 101 ENSGACG00000010538 ENSGACG00000010540 ENSGACG00000010544 H3C15 (ENSGACG00000010547) #32 Tetraodontidae ANCESTRAL SPECIES 196 ENSGT01100000263569.a.b.a.b.a.a ENSGT01100000263504.a.b.b.b.b.y ENSGT01100000263559.A #25 ENSGT00950000183089.c.a.k.b.a.a #37 ENSGT01100000263559.B.lf #32 ENSGT01060000248528.b ENSGT01020000230360.c.b.a.a.a.a.b.a.a.a.b.b.c.a ##31 Tetraodon MODERN SPECIES 22 GPR119 (ENSTNIG00000001505) clk4b (ENSTNIG00000007593) ENSTNIG00000007594 btg4 (ENSTNIG00000007595) hnrnpaba (ENSTNIG00000007596) ENSTNIG00000007597 hspb9l (ENSTNIG00000001965) ENSTNIG00000007598 zmat2 (ENSTNIG00000007599) lcp2a (ENSTNIG00000001645) FOXI2 (ENSTNIG00000001292) ENSTNIG00000000447 ENSTNIG00000007600 ADRA1B (ENSTNIG00000007601) ENSTNIG00000007602 #37 ENSTNIG00000007603 #32 ENSTNIG00000000699 APBB3 (ENSTNIG00000007604) ENSTNIG00000007605 camk2a (ENSTNIG00000007606) rps14 (ENSTNIG00000007607) chm (ENSTNIG00000007608) ENSTNIG00000007609 ENSTNIG00000000702 ENSTNIG00000007610 ENSTNIG00000007611 ENSTNIG00000007612 ENSTNIG00000000432 ENSTNIG00000007613 DBN1 (ENSTNIG00000007614) GRK6 (ENSTNIG00000007615) Fugu DUPLICATION Fugu MODERN SPECIES 8 ENSTRUG00000023039 #37 ENSTRUG00000025869 ENSTRUG00000032970 #25 ENSTRUG00000002689 #37 ENSTRUG00000027124 #25 ENSTRUG00000026986 ENSTRUG00000029643 ENSTRUG00000029122 #19 ENSTRUG00000032916 ENSTRUG00000024593 ##35 ENSTRUG00000032531 ##31 ENSTRUG00000024579 ENSTRUG00000032950 #32 ENSTRUG00000021312 ##31 ENSTRUG00000026851 #37 ENSTRUG00000026537 #32 ENSTRUG00000032005 ENSTRUG00000020802 ENSTRUG00000029500 nansa (ENSTRUG00000015552) clta (ENSTRUG00000015571) gne (ENSTRUG00000015607) cplx2l (ENSTRUG00000015618) TMOD1 (ENSTRUG00000015628) stra6l (ENSTRUG00000019975) ENSTRUG00000022760 abca1a (ENSTRUG00000015743) ENSTRUG00000032261 SGCZ (ENSTRUG00000015887) tusc3 (ENSTRUG00000017650) ENSTRUG00000017618 Fugu MODERN SPECIES 8 xpa (ENSTRUG00000027763) slc24a2 (ENSTRUG00000015445) H3C1 (ENSTRUG00000023777) ENSTRUG00000023039 #37 ENSTRUG00000025869 ENSTRUG00000032970 #25 ENSTRUG00000002689 #37 ENSTRUG00000027124 #25 ENSTRUG00000026986 ENSTRUG00000029643 ENSTRUG00000029122 #19 ENSTRUG00000032916 ENSTRUG00000024593 ##35 ENSTRUG00000032531 ##31 ENSTRUG00000024579 ENSTRUG00000032950 #32 ENSTRUG00000021312 ##31 ENSTRUG00000026851 #37 ENSTRUG00000026537 #32 ENSTRUG00000032005 ENSTRUG00000020802 ENSTRUG00000029500 nansa (ENSTRUG00000015552) clta (ENSTRUG00000015571) gne (ENSTRUG00000015607) cplx2l (ENSTRUG00000015618) TMOD1 (ENSTRUG00000015628) stra6l (ENSTRUG00000019975) ENSTRUG00000022760 abca1a (ENSTRUG00000015743) ENSTRUG00000032261 Ovalentaria ANCESTRAL SPECIES 122 ENSGT01100000263474.a.b.b.o.b.a ##36 ENSGT01100000263559.B #32 Atherinomorphae ANCESTRAL SPECIES 23 ENSGT01100000263559.B #32 ENSGT01060000248528.b ENSGT01100000263506.a.d #14 ENSGT00990000203553.c.a.a.b.b.a.a.a.a.a.a.b ##28 ENSGT01030000234575.c.a.a.a.a.a.b.a.a ENSGT01020000230338.a.b.b.a.a.b.a.b.b.a ENSGT01020000230338.a.b.b.a.a.b.a.b.b.b.b ENSGT00390000005412 ENSGT00940000155563.k.b.b ENSGT01050000244891.E.a.a ENSGT00390000002361 ENSGT00940000154830.d ENSGT00390000009760 ENSGT00940000157228.i.a ENSGT00940000157228.i.b ENSGT00940000156104.B Oryzias ANCESTRAL SPECIES ENSGT01100000263559.B #32 Oryzias_b ANCESTRAL SPECIES ENSGT01100000263559.B #32 Javanese ricefish MODERN SPECIES PRPSAP1 (ENSOJAG00000015912) ENSOJAG00000016095 ENSOJAG00000016208 #37 ENSOJAG00000016236 ##28 ENSOJAG00000016257 ENSOJAG00000016278 ENSOJAG00000016296 ##31 ENSOJAG00000016305 ENSOJAG00000016332 ENSOJAG00000016343 ENSOJAG00000016350 ENSOJAG00000016363 ENSOJAG00000016397 ENSOJAG00000016431 ##31 ENSOJAG00000016444 ENSOJAG00000016476 #32 ENSOJAG00000016480 ##28 ENSOJAG00000016496 #37 capn9 (ENSOJAG00000016557) taf5l (ENSOJAG00000017027) nup133 (ENSOJAG00000017093) ENSOJAG00000018258 ENSOJAG00000018276 CCSAP (ENSOJAG00000018296) cdc6 (ENSOJAG00000018306) ENSOJAG00000018403 MRPL21 (ENSOJAG00000018424) mrpl45 (ENSOJAG00000018748) ENSOJAG00000018767 socs7 (ENSOJAG00000018901) sp2 (ENSOJAG00000018969) Cyprinodontiformes ANCESTRAL SPECIES 97 ENSGT01100000263559.B #32 ENSGT01060000248528.b ENSGT01100000263506.a.d #14 ENSGT00990000203553.c.a.a.b.a.a.a.a.b.m.b ##28 ENSGT01100000263569.a.b.a.b.a.b.b.a Aplocheiloidei ANCESTRAL SPECIES 399 ENSGT01100000263559.B #32 ENSGT01060000248528.b ENSGT01100000263506.a.d #14 Turquoise killifish MODERN SPECIES 1615 ENSNFUG00015002783 ENSNFUG00015002780 or30bt5 (ENSNFUG00015002776) ENSNFUG00015002773 ENSNFUG00015002771 ENSNFUG00015002767 or71aq1 (ENSNFUG00015002766) ENSNFUG00015002763 ENSNFUG00015002759 PGAP2 (ENSNFUG00015002756) stim1a (ENSNFUG00015002437) ENSNFUG00015002375 ENSNFUG00015002371 ENSNFUG00015002368 #37 ENSNFUG00015002366 ##31 ENSNFUG00015002361 #32 SI (ENSNFUG00015002356) ENSNFUG00015002351 robo2 (ENSNFUG00015001043) ENSNFUG00015000779 ENSNFUG00015000777 ENSNFUG00015000773 ENSNFUG00015000770 ROBO1 (ENSNFUG00015000725) ENSNFUG00015000662 APBB1 (ENSNFUG00015000646) ILK (ENSNFUG00015000630) RRP8 (ENSNFUG00015000624) CR954145.1 (ENSNFUG00015000621) ENSNFUG00015000619 DIABLO (ENSNFUG00015000613) Cyprinodontoidei ANCESTRAL SPECIES 159 ENSGT01100000263559.B #32 ENSGT01060000248528.b ENSGT01100000263567.a.b.b ##35 Poeciliinae ANCESTRAL SPECIES 95 ENSGT01100000263559.B #32 ENSGT01060000248528.b ENSGT01100000263567.a.b.b ##35 Poecilia ANCESTRAL SPECIES 150 ENSGT00950000183089.c.a.k.b.b.k.a.a.a.a.b #37 ENSGT01100000263559.B #32 ENSGT01060000248528.b ENSGT01100000263567.a.b.b ##35 NAME_6 ANCESTRAL SPECIES 195 ENSGT00950000183089.c.a.k.b.b.k.b.b #37 ENSGT00950000183089.c.a.k.b.b.k.a.a.a.a.b #37 ENSGT01100000263559.B #32 ENSGT01060000248528.b ENSGT01100000263567.a.b.b ##35 ENSGT01020000230360.c.b.a.a.a.a.b.a.a.a.b.b.i.a ##31 ENSGT01100000263504.a.b.b.b.a.b ENSGT01030000234540.C.k ENSGT01030000234540.C.l ENSGT00940000172777 ENSGT00390000012496.b.h ENSGT00940000158350 ENSGT00950000182933.C.j ENSGT01100000263538.A.a.a.a.j.a.a.a.b.a.a.v ENSGT00950000183127.c.b.d.a.b.a.a.a.a.a.d.a ENSGT00940000161847.b.a.e.b.pb.a.f.a ENSGT01100000263538.A.a.a.a.j.a.a.a.b.a.a.u.a.a ENSGT01100000263538.A.a.a.a.j.a.b.b Sailfin molly MODERN SPECIES 2327 ENSPLAG00000004357 ENSPLAG00000004305 #32 ENSPLAG00000004235 ENSPLAG00000004175 mrpl48 (ENSPLAG00000004162) Amazon molly DUPLICATION Amazon molly MODERN SPECIES 320 ARHGAP8 (ENSPFOG00000015678) ENSPFOG00000015620 nup50 (ENSPFOG00000015591) kiaa0930 (ENSPFOG00000015526) fbxo7 (ENSPFOG00000015474) h2ax (ENSPFOG00000020620) #31 ENSPFOG00000015460 ENSPFOG00000020845 ##35 ENSPFOG00000020844 ENSPFOG00000015449 #37 KCNMB4 (ENSPFOG00000015443) CNOT2 (ENSPFOG00000015440) ENSPFOG00000015423 #31 ENSPFOG00000020843 ENSPFOG00000020842 #37 H3C15 (ENSPFOG00000020841) #32 ENSPFOG00000020840 ENSPFOG00000015415 #31 Amazon molly MODERN SPECIES 886 ENSPFOG00000017848 ENSPFOG00000017855 ENSPFOG00000017852 ENSPFOG00000020819 ##31 hist2h3c (ENSPFOG00000024515) #32 ENSPFOG00000020820 ENSPFOG00000017862 ENSPFOG00000017865 ENSPFOG00000023736 ENSPFOG00000020821 ##31 ENSPFOG00000017867 ENSPFOG00000017868 ENSPFOG00000017874 ENSPFOG00000023356 ENSPFOG00000017885 SMURF2 (ENSPFOG00000017936) Ovalentaria_B ANCESTRAL SPECIES 153 ENSGT01100000263474.a.b.b.o.b.a ##36 ENSGT01100000263559.B #32 Pomacentridae ANCESTRAL SPECIES ENSGT01100000263559.B #32 Pomacentridae_A ANCESTRAL SPECIES ENSGT01100000263559.B #32 Amphiprion ANCESTRAL SPECIES 385 ENSGT01100000263474.a.b.b.o.b.a.b.b.b.a ##36 ENSGT01100000263559.B #32 Clown anemonefish DUPLICATION Clown anemonefish MODERN SPECIES 725 ENSAOCG00000000116 ##36 ENSAOCG00000003971 ENSAOCG00000003968 #37 ENSAOCG00000003960 ##35 ENSAOCG00000003940 ENSAOCG00000003918 ENSAOCG00000003915 ##36 ENSAOCG00000003891 ENSAOCG00000003858 ##31 ENSAOCG00000003855 ##28 ENSAOCG00000003837 ##36 ENSAOCG00000003834 ##28 ENSAOCG00000000102 ##36 ENSAOCG00000003824 #32 ENSAOCG00000003806 ##31 ENSAOCG00000003801 ##36 ENSAOCG00000003765 ##31 ENSAOCG00000003759 ENSAOCG00000003736 atpv0e2 (ENSAOCG00000003732) ENSAOCG00000003726 ENTPD7 (ENSAOCG00000003719) slc25a28 (ENSAOCG00000003701) NKX2-3 (ENSAOCG00000003691) Clown anemonefish MODERN SPECIES 1438 msmo1 (ENSAOCG00000009513) KLHL2 (ENSAOCG00000009486) med28 (ENSAOCG00000009427) lap3 (ENSAOCG00000009407) ENSAOCG00000009370 ##36 ENSAOCG00000009358 ##28 ENSAOCG00000009341 ##36 ENSAOCG00000009227 #32 H4C7 (ENSAOCG00000009141) ##28 ENSAOCG00000009129 #37 ENSAOCG00000000560 ##36 ENSAOCG00000009105 Cichlidae ANCESTRAL SPECIES ENSGT01100000263559.B #32 Pseudocrenilabrinae ANCESTRAL SPECIES ENSGT01100000263559.B #32 Nile tilapia MODERN SPECIES 1 ENSONIG00000021215 ENSONIG00000017828 ENSONIG00000030223 ENSONIG00000033957 ENSONIG00000021216 chm (ENSONIG00000017832) rps14 (ENSONIG00000017838) camk2a (ENSONIG00000017842) ENSONIG00000017849 APBB3 (ENSONIG00000017851) ENSONIG00000028803 ENSONIG00000026809 ENSONIG00000017862 ENSONIG00000017854 ENSONIG00000032976 ENSONIG00000037819 #32 ENSONIG00000037959 ENSONIG00000021217 ##31 ADRA1B (ENSONIG00000036711) ENSONIG00000035922 ENSONIG00000028584 ENSONIG00000041680 ENSONIG00000017861 ponzr2 (ENSONIG00000039353) nhp2 (ENSONIG00000028712) ENSONIG00000040509 lcp2a (ENSONIG00000017868) zmat2 (ENSONIG00000017873) slbp2 (ENSONIG00000017877) ENSONIG00000017879 hspb9l (ENSONIG00000021218) Pseudocrenilabrinae_A ANCESTRAL SPECIES ENSGT01100000263559.B #32 Haplochromini ANCESTRAL SPECIES ENSGT01100000263559.B #32 Haplochromini_A ANCESTRAL SPECIES 168 ENSGT01100000263559.B #32 ENSGT01060000248528.b ENSGT01100000263514.A.e.a Haplochromini_B ANCESTRAL SPECIES 165 ENSGT01100000263559.B #32 ENSGT01060000248528.b.xe ENSGT01100000263504.a.b.b.b.b.y ENSGT01020000230360.c.b.a.b.a.b.c.a.a.b ##31 Eastern happy DUPLICATION Eastern happy MODERN SPECIES 15 ENSACLG00000004873 ENSACLG00000004870 ENSACLG00000004849 ENSACLG00000004844 ENSACLG00000004829 ENSACLG00000004826 ENSACLG00000004682 ENSACLG00000004657 ENSACLG00000004600 ENSACLG00000004588 ENSACLG00000004546 ENSACLG00000004536 ENSACLG00000004526 ENSACLG00000004511 ##28 ENSACLG00000004496 ##31 ENSACLG00000004412 #32 ENSACLG00000004366 ENSACLG00000004265 ENSACLG00000004239 ENSACLG00000003570 ENSACLG00000003557 ENSACLG00000003546 ENSACLG00000003542 ENSACLG00000002995 ENSACLG00000002979 ENSACLG00000002945 ENSACLG00000002885 ENSACLG00000002844 ENSACLG00000002810 ENSACLG00000002785 ENSACLG00000002771 Eastern happy MODERN SPECIES 8 ing3 (ENSACLG00000006777) tspan12 (ENSACLG00000006802) gpr19 (ENSACLG00000006815) crebl2 (ENSACLG00000006824) dusp16 (ENSACLG00000006831) eps8a (ENSACLG00000006856) PTPRO (ENSACLG00000006942) ENSACLG00000007016 socs2 (ENSACLG00000007022) FLNC (ENSACLG00000007030) ENSACLG00000007078 sco2 (ENSACLG00000007084) ncaph2 (ENSACLG00000007091) kcnd2 (ENSACLG00000007563) si:ch73-368j24.12 (ENSACLG00000007578) ENSACLG00000007594 #32 ENSACLG00000007642 ##28 KCNA5 (ENSACLG00000007649) ENSACLG00000007661 ARHGAP8 (ENSACLG00000008301) PHF21B (ENSACLG00000008319) nup50 (ENSACLG00000008324) kiaa0930 (ENSACLG00000008334) fbxo7 (ENSACLG00000008351) rtcb (ENSACLG00000008367) xpot (ENSACLG00000008404) rpl18a (ENSACLG00000008450) ENSACLG00000008466 pthlha (ENSACLG00000008477) ENSACLG00000008489 C11orf98 (ENSACLG00000008497) Eastern happy MODERN SPECIES 26 ENSACLG00000012714 gmppb (ENSACLG00000012735) ENSACLG00000012742 ENSACLG00000012775 ENSACLG00000012781 ##35 ENSACLG00000012883 #27 ENSACLG00000012889 ##28 gdf3 (ENSACLG00000012901) pgap2 (ENSACLG00000012916) ENSACLG00000012921 ENSACLG00000012923 ENSACLG00000012956 ENSACLG00000012957 ##31 ENSACLG00000012958 #14 ENSACLG00000012970 ##31 ENSACLG00000012973 #32 ENSACLG00000013002 ENSACLG00000013004 ENSACLG00000013009 ENSACLG00000013076 ENSACLG00000013120 ENSACLG00000013154 ENSACLG00000013166 ENSACLG00000013171 ENSACLG00000013363 ENSACLG00000013365 ENSACLG00000013423 ENSACLG00000013428 ENSACLG00000013452 ENSACLG00000013465 Pinecone sodierfish DUPLICATION Pinecone sodierfish MODERN SPECIES 5 GALNT10 (ENSMMDG00005015872) ENSMMDG00005015871 sap30l (ENSMMDG00005015870) ENSMMDG00005015866 ponzr2 (ENSMMDG00005015863) ENSMMDG00005015862 ENSMMDG00005015860 ##31 ENSMMDG00005015857 ##28 ENSMMDG00005015856 #37 ENSMMDG00005015854 ENSMMDG00005015852 ##31 ENSMMDG00005015849 ##28 ENSMMDG00005015847 #37 ENSMMDG00005015845 #23 ENSMMDG00005015843 ##36 ENSMMDG00005015841 #32 ENSMMDG00005015839 #19 ENSMMDG00005015837 ##31 ENSMMDG00005015835 ##36 ENSMMDG00005015832 ##28 ENSMMDG00005015830 ENSMMDG00005015827 #37 ENSMMDG00005015826 ##28 ENSMMDG00005015824 ##31 zgc:123105 (ENSMMDG00005015821) clk4b (ENSMMDG00005015818) btg4 (ENSMMDG00005015817) hnrnpaba (ENSMMDG00005015814) st6gal1 (ENSMMDG00005015811) ncf1 (ENSMMDG00005015807) gria1b (ENSMMDG00005015799) Pinecone sodierfish MODERN SPECIES 22 ENSMMDG00005000619 ENSMMDG00005000616 ENSMMDG00005000610 ##35 ENSMMDG00005000607 ##31 ENSMMDG00005000466 slc18a2 (ENSMMDG00005000429) ENSMMDG00005000418 ENSMMDG00005000414 ENSMMDG00005000408 ENSMMDG00005000399 ENSMMDG00005000394 ENSMMDG00005000388 ENSMMDG00005000384 ENSMMDG00005000379 ##28 ENSMMDG00005000375 ##36 ENSMMDG00005000372 #32 ENSMMDG00005000367 ##31 ENSMMDG00005000363 #37 ENSMMDG00005000361 ##36 ENSMMDG00005000356 #26 ENSMMDG00005000351 ##31 ENSMMDG00005000345 ##35 ENSMMDG00005000335 ENSMMDG00005007722 ENSMMDG00005007721 ##28 ENSMMDG00005007719 ##35 ENSMMDG00005007715 ##36 ENSMMDG00005007713 #37 ENSMMDG00005007711 ##28 ENSMMDG00005007708 ##35 psmd3 (ENSMMDG00005006395) Otomorpha ANCESTRAL SPECIES 494 ENSGT00990000203553.c.a.a.b.b.a.b ##28 ENSGT01020000230360.c.b.a.a.a.a.a.d ##31 ENSGT01100000263559.B #32 ENSGT01060000248528.b ENSGT01100000263474.a.b.a.b.a.d ##36 ENSGT00950000183089.c.a #37 ENSGT01020000230360.c.b.a.a.a.a.b.a.a.a.b #31 ENSGT01100000263514.A.f ENSGT01020000230360.c.b.a.a.b ##31 Otophysi ANCESTRAL SPECIES 389 ENSGT01020000230360.c.b.a.a.a.a.a.d.i ##31 ENSGT01100000263559.B #32 ENSGT01060000248528.b ENSGT01100000263474.a.b.a.b.a.d ##36 ENSGT00950000183089.c.a #37 ENSGT01020000230360.c.b.a.a.a.a.b.a.a.a.b #31 ENSGT01100000263514.A.f ENSGT01020000230360.c.b.a.a.b ##31 Cyprinoidei ANCESTRAL SPECIES 191 ENSGT00940000159147.b.b ENSGT00950000182991.A.b.b ENSGT00990000203615.b.a.a.a.a.g.a.b ENSGT00940000166094 ENSGT00940000162700.f ENSGT00950000183089.c.a.m.a.b #37 ENSGT01100000263559.B #32 ENSGT01060000248528.b.n ENSGT01100000263474.a.b.a.b.a.d ##36 ENSGT00950000183089.c.a.m.a.a #37 ENSGT01100000263559.A.db #25 ENSGT01060000248528.b.m.b ENSGT01020000230360.c.b.a.a.a.a.a.d.i ##31 ENSGT00940000156472.c Cyprininae ANCESTRAL SPECIES 1551 ENSGT00950000183089.c.a.m.a.b.a.b #37 ENSGT01100000263559.B #32 Cyprininae_a ANCESTRAL SPECIES 1176 ENSGT00950000183089.c.a.m.a.b.a.b #37 ENSGT01100000263559.B #32 Golden-line barbel MODERN SPECIES 3741 ENSSGRG00000004848 ##31 H3C15 (ENSSGRG00000004855) #32 ENSSGRG00000004875 ##28 Common carp reference DUPLICATION Common carp reference MODERN SPECIES 37 ENSCCRG00000054426 ENSCCRG00000011168 lrrk2 (ENSCCRG00000023338) ENSCCRG00000023607 spi1a (ENSCCRG00000067414) ENSCCRG00000023629 FIBIN (ENSCCRG00000064565) slc5a12 (ENSCCRG00000001602) ANO3 (ENSCCRG00000001456) svip (ENSCCRG00000073693) GAS2 (ENSCCRG00000079326) slc17a6a (ENSCCRG00000001345) ANO5 (ENSCCRG00000075447) ENSCCRG00000033108 ENSCCRG00000077396 ENSCCRG00000067925 #32 ENSCCRG00000061204 ##31 ENSCCRG00000058264 ENSCCRG00000067526 ENSCCRG00000012743 #14 ENSCCRG00000060232 #25 ENSCCRG00000059679 ##36 ENSCCRG00000041145 ENSCCRG00000017405 ENSCCRG00000059243 ENSCCRG00000071273 ENSCCRG00000033138 ENSCCRG00000079081 #37 ENSCCRG00000068098 ##36 ENSCCRG00000061770 #19 ENSCCRG00000057144 ##36 Common carp reference MODERN SPECIES zgc:101810 (ENSCCRG00000048389) ENSCCRG00000082846 actn3b (ENSCCRG00000047390) rbm14b (ENSCCRG00000047280) prkd4 (ENSCCRG00000047278) ENSCCRG00000075328 ENSCCRG00000060679 sf3b2 (ENSCCRG00000034663) capn1 (ENSCCRG00000005160) ENSCCRG00000056358 pnp5a (ENSCCRG00000061402) ENSCCRG00000015316 ENSCCRG00000064436 ENSCCRG00000066987 #37 ENSCCRG00000078728 ##36 ENSCCRG00000079165 #32 ENSCCRG00000015735 ENSCCRG00000052853 ENSCCRG00000080209 ENSCCRG00000036718 ENSCCRG00000061125 ENSCCRG00000052857 ##31 ENSCCRG00000059935 ENSCCRG00000062915 ENSCCRG00000042282 ENSCCRG00000080118 ENSCCRG00000071115 vangl2 (ENSCCRG00000024537) ENSCCRG00000076075 ENSCCRG00000076192 ENSCCRG00000077941 Common carp reference MODERN SPECIES ENSCCRG00000058256 #37 ENSCCRG00000054678 #37 ENSCCRG00000032940 ENSCCRG00000058818 PTPRD (ENSCCRG00000049254) ENSCCRG00000065752 TYRP1 (ENSCCRG00000047321) LURAP1L (ENSCCRG00000082720) ENSCCRG00000052968 ##36 ENSCCRG00000064868 ##36 ENSCCRG00000062149 ENSCCRG00000004814 ENSCCRG00000062287 #25 ENSCCRG00000053465 #37 ENSCCRG00000059347 #31 ENSCCRG00000068119 #32 ENSCCRG00000060112 #31 ENSCCRG00000055940 ENSCCRG00000079776 ENSCCRG00000063710 #26 ENSCCRG00000062278 ##36 casq1b (ENSCCRG00000019310) ENSCCRG00000063320 ENSCCRG00000003172 ENSCCRG00000045003 ENSCCRG00000045009 ENSCCRG00000061087 ENSCCRG00000038245 ENSCCRG00000019384 ENSCCRG00000000759 ENSCCRG00000048131 Zebrafish DUPLICATION Zebrafish DUPLICATION Zebrafish MODERN SPECIES 17 vps4a (ENSDARG00000030114) cdk10 (ENSDARG00000034256) ENSDARG00000097374 ENSDARG00000075513 FLNC (ENSDARG00000018566) ENSDARG00000091728 ##36 ENSDARG00000111753 ENSDARG00000113800 ##31 ENSDARG00000109370 ##36 ENSDARG00000075508 #37 hist2h3c (ENSDARG00000094154) #32 ENSDARG00000112561 ##36 ENSDARG00000113205 zgc:112234 (ENSDARG00000111934) ##36 ENSDARG00000110841 #37 zgc:113983 (ENSDARG00000068941) #32 ENSDARG00000111648 ##31 zgc:165555 (ENSDARG00000112954) ENSDARG00000111964 ##36 ENSDARG00000012073 zgc:162611 (ENSDARG00000092846) ENSDARG00000112647 #25 ENSDARG00000091905 #37 zgc:194989 (ENSDARG00000114405) ##36 ENSDARG00000115281 ENSDARG00000114500 #25 ENSDARG00000112840 ##31 ENSDARG00000114195 ##36 ENSDARG00000114534 ENSDARG00000114370 #32 ENSDARG00000115766 #37 Zebrafish MODERN SPECIES 22 GAL3ST3 (ENSDARG00000073728) ccs (ENSDARG00000092003) actn3b (ENSDARG00000001431) rbm14b (ENSDARG00000103834) CCS (ENSDARG00000116246) ENSDARG00000113916 prkd4 (ENSDARG00000104153) sf3b2 (ENSDARG00000018049) capn1 (ENSDARG00000045199) pnp5a (ENSDARG00000078619) KCNJ10 (ENSDARG00000090815) ENSDARG00000105438 ENSDARG00000074818 zgc:110425 (ENSDARG00000058479) #37 ENSDARG00000105444 ##31 ENSDARG00000105359 #32 zgc:112234 (ENSDARG00000105507) ##36 hist1h2a2 (ENSDARG00000103015) ##31 ENSDARG00000105409 zgc:112234 (ENSDARG00000105393) ##36 zgc:154164 (ENSDARG00000105355) ENSDARG00000074012 ENSDARG00000098595 ##31 ENSDARG00000105484 #25 zgc:112234 (ENSDARG00000105483) ##36 ENSDARG00000105366 ##31 ENSDARG00000105482 ENSDARG00000105350 #37 ENSDARG00000105478 ##31 zgc:173552 (ENSDARG00000105345) ##35 zgc:112234 (ENSDARG00000105340) ##36 Zebrafish DUPLICATION Zebrafish MODERN SPECIES 22 ENSDARG00000113763 si:ch73-368j24.12 (ENSDARG00000105502) ENSDARG00000105418 #25 ENSDARG00000105471 ##28 ENSDARG00000058564 ENSDARG00000086552 ##31 ENSDARG00000105374 #25 zgc:112234 (ENSDARG00000105414) ##36 ENSDARG00000105400 ##31 ENSDARG00000105318 zgc:112234 (ENSDARG00000105468) ##36 ENSDARG00000100279 ##31 ENSDARG00000105382 si:ch73-368j24.8 (ENSDARG00000104588) ##36 ENSDARG00000105430 #37 H3C15 (ENSDARG00000105459) #32 ENSDARG00000105353 ENSDARG00000105379 ENSDARG00000105372 ENSDARG00000015607 ENSDARG00000105473 ENSDARG00000105384 ##36 hist2h3ca1 (ENSDARG00000105508) #25 si:dkey-23a13.20 (ENSDARG00000100906) ##31 zgc:163040 (ENSDARG00000099920) ENSDARG00000101720 #25 si:dkey-23a13.17 (ENSDARG00000105328) #37 si:dkey-23a13.16 (ENSDARG00000102806) ##36 ENSDARG00000101249 hist1h2a7 (ENSDARG00000099123) ##31 ENSDARG00000100259 ##36 Zebrafish MODERN SPECIES 22 vangl2 (ENSDARG00000027397) ENSDARG00000052482 MYADM (ENSDARG00000086815) ENSDARG00000092823 ENSDARG00000090099 ENSDARG00000093835 ENSDARG00000095133 ENSDARG00000094374 ENSDARG00000028912 ENSDARG00000095068 ENSDARG00000105455 ENSDARG00000093987 ENSDARG00000105470 dusp19b (ENSDARG00000045200) hist1h2a11 (ENSDARG00000088686) ##31 ENSDARG00000103819 #32 zgc:112234 (ENSDARG00000099514) ##36 ENSDARG00000105314 ##31 ENSDARG00000105352 ENSDARG00000105397 ##36 ENSDARG00000105431 ENSDARG00000098970 #25 ENSDARG00000029838 ENSDARG00000105342 ENSDARG00000100259 ##36 hist1h2a7 (ENSDARG00000099123) ##31 ENSDARG00000101249 si:dkey-23a13.16 (ENSDARG00000102806) ##36 si:dkey-23a13.17 (ENSDARG00000105328) #37 ENSDARG00000101720 #25 zgc:163040 (ENSDARG00000099920) Zebrafish MODERN SPECIES 17 ENSDARG00000114125 ##36 ENSDARG00000109755 ##31 ENSDARG00000110035 ENSDARG00000032637 #37 ENSDARG00000113481 ##31 ENSDARG00000112375 #32 ENSDARG00000111247 zgc:173585 (ENSDARG00000089039) ##36 ENSDARG00000112967 #25 ENSDARG00000112593 ##31 ENSDARG00000116654 ##36 ENSDARG00000113399 ##31 ENSDARG00000110812 ENSDARG00000115938 ##36 ENSDARG00000115766 #37 ENSDARG00000114370 #32 ENSDARG00000114534 ENSDARG00000114195 ##36 ENSDARG00000112840 ##31 ENSDARG00000114500 #25 ENSDARG00000115281 zgc:194989 (ENSDARG00000114405) ##36 ENSDARG00000091905 #37 ENSDARG00000112647 #25 zgc:162611 (ENSDARG00000092846) ENSDARG00000012073 ENSDARG00000111964 ##36 zgc:165555 (ENSDARG00000112954) ENSDARG00000111648 ##31 zgc:113983 (ENSDARG00000068941) #32 ENSDARG00000110841 #37 Zebrafish MODERN SPECIES 17 gabarapl2 (ENSDARG00000027200) tmem231 (ENSDARG00000042272) chst6 (ENSDARG00000061357) spire2 (ENSDARG00000003084) SNTB2 (ENSDARG00000051763) vps4a (ENSDARG00000030114) cdk10 (ENSDARG00000034256) ENSDARG00000097374 ENSDARG00000075513 FLNC (ENSDARG00000018566) ENSDARG00000091728 ##36 ENSDARG00000111753 ENSDARG00000113800 ##31 ENSDARG00000109370 ##36 ENSDARG00000075508 #37 hist2h3c (ENSDARG00000094154) #32 ENSDARG00000112561 ##36 ENSDARG00000113205 zgc:112234 (ENSDARG00000111934) ##36 ENSDARG00000110841 #37 zgc:113983 (ENSDARG00000068941) #32 ENSDARG00000111648 ##31 zgc:165555 (ENSDARG00000112954) ENSDARG00000111964 ##36 ENSDARG00000012073 zgc:162611 (ENSDARG00000092846) ENSDARG00000112647 #25 ENSDARG00000091905 #37 zgc:194989 (ENSDARG00000114405) ##36 ENSDARG00000115281 ENSDARG00000114500 #25 Zebrafish MODERN SPECIES 17 GAS2 (ENSDARG00000001259) fancf (ENSDARG00000019250) slc17a6a (ENSDARG00000001127) ANO5 (ENSDARG00000015731) ano9a (ENSDARG00000078941) ##36 ENSDARG00000076320 zgc:153405 (ENSDARG00000096992) #37 ENSDARG00000114133 ##31 zgc:113984 (ENSDARG00000115644) #25 si:dkey-261m9.17 (ENSDARG00000111165) ENSDARG00000114125 ##36 ENSDARG00000109755 ##31 ENSDARG00000110035 ENSDARG00000032637 #37 ENSDARG00000113481 ##31 ENSDARG00000112375 #32 ENSDARG00000111247 zgc:173585 (ENSDARG00000089039) ##36 ENSDARG00000112967 #25 ENSDARG00000112593 ##31 ENSDARG00000116654 ##36 ENSDARG00000113399 ##31 ENSDARG00000110812 ENSDARG00000115938 ##36 ENSDARG00000115766 #37 ENSDARG00000114370 #32 ENSDARG00000114534 ENSDARG00000114195 ##36 ENSDARG00000112840 ##31 ENSDARG00000114500 #25 ENSDARG00000115281 Zebrafish MODERN SPECIES 17 mphosph6 (ENSDARG00000093007) SNX20 (ENSDARG00000045554) SALL1 (ENSDARG00000075891) RBL2 (ENSDARG00000045636) rpgrip1l (ENSDARG00000051754) irx5b (ENSDARG00000074070) amfra (ENSDARG00000020218) ENSDARG00000051729 DUS2 (ENSDARG00000077607) SLC7A10 (ENSDARG00000051730) ENSDARG00000116673 faap24 (ENSDARG00000051731) bmb (ENSDARG00000096603) ENSDARG00000116781 ENSDARG00000110809 ##31 ENSDARG00000114169 #32 ENSDARG00000111494 ENSDARG00000086591 ##36 ENSDARG00000112528 zgc:110216 (ENSDARG00000077456) #37 hist1h2a4 (ENSDARG00000051736) ##31 zgc:173552 (ENSDARG00000051737) ##35 ENSDARG00000110152 ENSDARG00000109737 ##36 ENSDARG00000109458 ##31 ENSDARG00000115054 ENSDARG00000051735 #37 ENSDARG00000111536 ##31 zgc:173552 (ENSDARG00000112131) ##35 ENSDARG00000112491 ENSDARG00000114895 ##36 Characiphysae ANCESTRAL SPECIES 473 ENSGT01020000230360.c.b.a.a.a.a.a.d.h.b ##31 ENSGT01100000263559.B #32 Channel catfish DUPLICATION Channel catfish DUPLICATION Channel catfish MODERN SPECIES 325 H2A (ENSIPUG00000012097) ##31 ENSIPUG00000012107 #32 Channel catfish MODERN SPECIES 3 ENSIPUG00000003595 ##28 ENSIPUG00000003603 #10 ENSIPUG00000003607 ##36 ENSIPUG00000003612 #37 H2A (ENSIPUG00000003622) ##31 ENSIPUG00000003626 #32 ENSIPUG00000003634 ENSIPUG00000003645 emc7b (ENSIPUG00000003653) chd6 (ENSIPUG00000003692) rbl1 (ENSIPUG00000003765) Pigu (ENSIPUG00000003857) OSGIN2 (ENSIPUG00000003905) ENSIPUG00000003924 atg3 (ENSIPUG00000003956) atp5e (ENSIPUG00000004082) cyc1 (ENSIPUG00000004093) ergic3 (ENSIPUG00000004110) romo1 (ENSIPUG00000004166) mych (ENSIPUG00000004172) ENSIPUG00000004179 Channel catfish MODERN SPECIES 479 ENSIPUG00000001270 #32 Channel catfish MODERN SPECIES 179 ENSIPUG00000009334 #32 Channel catfish MODERN SPECIES 396 H2A (ENSIPUG00000012863) ##31 ENSIPUG00000012870 #32 Clupeiformes ANCESTRAL SPECIES 759 ENSGT00990000203553.c.a.a.b.b.a.b ##28 ENSGT01020000230360.c.b.a.a.a.a.a.d ##31 ENSGT01100000263559.B #32 Atlantic herring DUPLICATION Atlantic herring MODERN SPECIES 16 ENSCHAG00000004899 #37 ENSCHAG00000004929 ENSCHAG00000004955 ENSCHAG00000004984 ENSCHAG00000005004 ENSCHAG00000005045 ENSCHAG00000005075 ENSCHAG00000002567 ENSCHAG00000002659 ENSCHAG00000002690 ENSCHAG00000002717 ENSCHAG00000002844 ENSCHAG00000002901 ##31 ENSCHAG00000002931 ##28 ENSCHAG00000002955 #37 ENSCHAG00000003002 #32 ENSCHAG00000003031 ##31 ENSCHAG00000003039 #35 ENSCHAG00000003073 ##36 ENSCHAG00000003121 ##28 ENSCHAG00000003133 capn8 (ENSCHAG00000003252) ENSCHAG00000004617 tspan34 (ENSCHAG00000009226) ENSCHAG00000009236 ENSCHAG00000009320 ENSCHAG00000009399 ENSCHAG00000009424 dand5 (ENSCHAG00000009432) rad23aa (ENSCHAG00000009450) ENSCHAG00000009468 Atlantic herring MODERN SPECIES 16 SPTBN1 (ENSCHAG00000024710) ACYP2 (ENSCHAG00000027126) ENSCHAG00000027129 sult6b1 (ENSCHAG00000027137) ENSCHAG00000027151 ENSCHAG00000027153 ENSCHAG00000027158 vipb (ENSCHAG00000002591) SLC29A1 (ENSCHAG00000002693) TMEM63B (ENSCHAG00000003353) ENSCHAG00000005624 elof1 (ENSCHAG00000005651) CNN1 (ENSCHAG00000005679) ENSCHAG00000005683 ##28 ENSCHAG00000005703 ##31 ENSCHAG00000005709 #32 ENSCHAG00000005715 ##36 ENSCHAG00000005727 ##28 ENSCHAG00000005744 ##31 ENSCHAG00000005750 #37 ENSCHAG00000005771 ##36 ENSCHAG00000005789 ENSCHAG00000005844 ##28 ENSCHAG00000005867 #8 ENSCHAG00000005885 ENSCHAG00000005934 ENSCHAG00000005959 ENSCHAG00000006141 ENSCHAG00000006176 ENSCHAG00000006189 ENSCHAG00000006346 Osteoglossiformes ANCESTRAL SPECIES ENSGT01100000263559.B #32 Asian bonytongue MODERN SPECIES 20 myh7ba (ENSSFOG00015002309) TRPC4AP (ENSSFOG00015002204) SLA2 (ENSSFOG00015002190) ndrg3a (ENSSFOG00015002131) ENSSFOG00015025052 arhgap46a (ENSSFOG00015030332) CLASP1 (ENSSFOG00015001775) SAMD9 (ENSSFOG00015001758) GLI2 (ENSSFOG00015001470) inhbb (ENSSFOG00015029754) RALB (ENSSFOG00015031572) epb41l5 (ENSSFOG00015001354) DAAM1 (ENSSFOG00015029716) L3HYPDH (ENSSFOG00015027099) ENSSFOG00015029977 ##31 hist2h3c (ENSSFOG00015018134) #32 WDR20 (ENSSFOG00015001045) hsp90aa1.2 (ENSSFOG00015000997) ENSSFOG00015000955 si:dkey-174m14.3 (ENSSFOG00015026593) SLC25A29 (ENSSFOG00015000907) FKBP3 (ENSSFOG00015000874) faua (ENSSFOG00015000850) arf6a (ENSSFOG00015000666) naa30 (ENSSFOG00015000656) ENSSFOG00015024990 ##28 ENSSFOG00015025570 ##36 ENSSFOG00015025209 ENTPD5 (ENSSFOG00015000485) rps29 (ENSSFOG00015000394) wdr21 (ENSSFOG00015000375) Reedfish DUPLICATION Reedfish MODERN SPECIES ENSECRG00000001175 ENSECRG00000001156 ENSECRG00000001106 ENSECRG00000001058 ENSECRG00000001037 ENSECRG00000001025 ENSECRG00000001009 ENSECRG00000000992 ENSECRG00000000972 ENSECRG00000000965 ENSECRG00000000952 ENSECRG00000000939 ##36 ENSECRG00000000926 ##31 ENSECRG00000000917 #37 ENSECRG00000000905 #32 ENSECRG00000000892 #32 ENSECRG00000000877 #37 ENSECRG00000000862 ##31 ENSECRG00000000854 ##36 ENSECRG00000000846 ENSECRG00000000832 #32 ENSECRG00000000819 #37 ENSECRG00000000806 ##31 ENSECRG00000000798 ##36 ENSECRG00000000788 ENSECRG00000000782 ##36 ENSECRG00000000768 ENSECRG00000000752 #37 ENSECRG00000000746 ##36 ENSECRG00000000738 ##31 ENSECRG00000000731 ##36 Reedfish MODERN SPECIES ENSECRG00000000438 ##36 ENSECRG00000000444 ENSECRG00000000451 ##36 ENSECRG00000000456 ENSECRG00000000463 ##36 ENSECRG00000000470 ENSECRG00000000476 #25 ENSECRG00000000488 ##36 ENSECRG00000000494 ##31 ENSECRG00000000499 ##36 ENSECRG00000000509 ENSECRG00000000526 ENSECRG00000000537 ENSECRG00000000547 ##31 ENSECRG00000000557 ENSECRG00000000565 #32 ENSECRG00000000576 ENSECRG00000000585 ENSECRG00000000595 ENSECRG00000000606 #37 ENSECRG00000000618 ##31 ENSECRG00000000624 ##36 ENSECRG00000000642 ENSECRG00000000667 ENSECRG00000000677 ##31 ENSECRG00000000688 ##36 ENSECRG00000000697 #10 ENSECRG00000000718 #35 ENSECRG00000000704 #35 ENSECRG00000000731 ##36 ENSECRG00000000738 ##31 Reedfish MODERN SPECIES 1 gpx7 (ENSECRG00000007499) TUT4 (ENSECRG00000007462) prpf38a (ENSECRG00000007442) orc1 (ENSECRG00000007422) mpl (ENSECRG00000007403) tie1 (ENSECRG00000007369) si:ch73-185c24.2 (ENSECRG00000007336) ap1m3 (ENSECRG00000007293) tmem125b (ENSECRG00000007272) CFAP57 (ENSECRG00000007244) ENSECRG00000007224 ENSECRG00000007219 #37 ENSECRG00000007209 ##31 ENSECRG00000007202 ##36 ENSECRG00000007194 hist2h3c (ENSECRG00000021895) #32 ENSECRG00000021890 ENSECRG00000021884 ##36 ENSECRG00000021881 ##31 ENSECRG00000021872 #37 ENSECRG00000021865 ##35 ENSECRG00000021864 ##36 ENSECRG00000021857 ENSECRG00000021854 ##36 ENSECRG00000021847 ##31 ENSECRG00000021842 ##35 ENSECRG00000021834 ##36 ENSECRG00000021825 ##31 ENSECRG00000021818 #37 ENSECRG00000021811 ##31 ENSECRG00000021804 Reedfish MODERN SPECIES ENSECRG00000001025 ENSECRG00000001009 ENSECRG00000000992 ENSECRG00000000972 ENSECRG00000000965 ENSECRG00000000952 ENSECRG00000000939 ##36 ENSECRG00000000926 ##31 ENSECRG00000000917 #37 ENSECRG00000000905 #32 ENSECRG00000000892 #32 ENSECRG00000000877 #37 ENSECRG00000000862 ##31 ENSECRG00000000854 ##36 ENSECRG00000000846 ENSECRG00000000832 #32 ENSECRG00000000819 #37 ENSECRG00000000806 ##31 ENSECRG00000000798 ##36 ENSECRG00000000788 ENSECRG00000000782 ##36 ENSECRG00000000768 ENSECRG00000000752 #37 ENSECRG00000000746 ##36 ENSECRG00000000738 ##31 ENSECRG00000000731 ##36 ENSECRG00000000704 #35 ENSECRG00000000718 #35 ENSECRG00000000697 #10 ENSECRG00000000688 ##36 ENSECRG00000000677 ##31 Reedfish MODERN SPECIES 1 UBE2U (ENSECRG00000009018) ROR1 (ENSECRG00000008992) PGM1 (ENSECRG00000008950) efcab7 (ENSECRG00000008920) alg6 (ENSECRG00000008901) foxd3 (ENSECRG00000008882) atg4c (ENSECRG00000008865) angptl3 (ENSECRG00000008852) DOCK7 (ENSECRG00000008573) usp1 (ENSECRG00000008474) KANK4 (ENSECRG00000008452) lrp8 (ENSECRG00000008063) ENSECRG00000007997 cfap144 (ENSECRG00000007989) ebna1bp2 (ENSECRG00000007977) ENSECRG00000007972 #32 ENSECRG00000007965 #37 ENSECRG00000007958 ##31 ENSECRG00000007951 ##36 ENSECRG00000007945 ENSECRG00000007940 ##36 ENSECRG00000007931 ##31 ENSECRG00000007925 ##31 zgc:114041 (ENSECRG00000007915) ENSECRG00000007904 ENSECRG00000007896 #37 ENSECRG00000007890 ##35 ENSECRG00000007876 ##31 ENSECRG00000007870 ##36 ENSECRG00000007863 ENSECRG00000007856 #25 Reedfish DUPLICATION Reedfish MODERN SPECIES ENSECRG00000000738 ##31 ENSECRG00000000746 ##36 ENSECRG00000000752 #37 ENSECRG00000000768 ENSECRG00000000782 ##36 ENSECRG00000000788 ENSECRG00000000798 ##36 ENSECRG00000000806 ##31 ENSECRG00000000819 #37 ENSECRG00000000832 #32 ENSECRG00000000846 ENSECRG00000000854 ##36 ENSECRG00000000862 ##31 ENSECRG00000000877 #37 ENSECRG00000000892 #32 ENSECRG00000000905 #32 ENSECRG00000000917 #37 ENSECRG00000000926 ##31 ENSECRG00000000939 ##36 ENSECRG00000000952 ENSECRG00000000965 ENSECRG00000000972 ENSECRG00000000992 ENSECRG00000001009 ENSECRG00000001025 ENSECRG00000001037 ENSECRG00000001058 ENSECRG00000001106 ENSECRG00000001156 ENSECRG00000001175 ENSECRG00000001188 Reedfish MODERN SPECIES 1 SSH3 (ENSECRG00000010208) mrpl18 (ENSECRG00000010202) ENSECRG00000010185 ndufs8a (ENSECRG00000010160) TBC1D10C (ENSECRG00000010142) PPP1CA (ENSECRG00000010107) RAD9A (ENSECRG00000010077) ENSECRG00000010058 ENSECRG00000010025 CLCF1 (ENSECRG00000010003) ENSECRG00000009991 P2RX3 (ENSECRG00000009959) ssrp1a (ENSECRG00000009932) ENSECRG00000009883 tmem17 (ENSECRG00000009854) ENSECRG00000009841 #32 ENSECRG00000009838 ENSECRG00000009834 ##35 ENSECRG00000009828 ##31 ENSECRG00000009824 ##36 ENSECRG00000009819 ENSECRG00000009814 ##31 ENSECRG00000009812 ##36 ENSECRG00000009804 ENSECRG00000009797 ENSECRG00000009788 ENSECRG00000009772 clp1 (ENSECRG00000009743) zdhhc5a (ENSECRG00000009724) ENSECRG00000009716 med19a (ENSECRG00000009712) Sarcopterygii ANCESTRAL SPECIES 284 ENSGT00990000203553.c.a.a.a.b ##28 ENSGT01100000263474.a.b.b ##36 ENSGT00950000183089 #37 ENSGT01100000263514.A.f ENSGT01100000263559.B #32 ENSGT01100000263569.a.b.b ENSGT00940000164494 ENSGT01060000248528.a.b.a.a.a.b ENSGT01100000263559.A #25 ENSGT00940000153118 ENSGT00940000153092 ENSGT01100000263504.a.b.b.b.b ENSGT01100000263474.a.b.a #36 ENSGT01100000263504.a.b.b.b.a.a Tetrapoda ANCESTRAL SPECIES 133 ENSGT01100000263504.a.b.b.b.b ENSGT01100000263474.a.b.a.c.a #36 ENSGT00940000155501.b ENSGT01100000263567.a.a #35 ENSGT01100000263506.a #14 ENSGT01060000248528.b.kh ENSGT01100000263474.a.b.b ##36 ENSGT00940000153118 ENSGT01100000263559.A #25 ENSGT01060000248528.a.b.a.a.a.b ENSGT00940000164494 ENSGT01100000263569.a.b.b ENSGT01100000263504.b ENSGT01100000263514.A.f ENSGT00950000183089 #37 ENSGT01100000263559.B #32 ENSGT01060000248528.b.jh.a ENSGT01100000263474.a.b.a.d #36 ENSGT01060000248528.b.jh.b ENSGT01100000263514.A.e.a ENSGT01100000263474.a.a ##36 ENSGT01020000230360.c.b.a.b.b.d ##31 Amniota ANCESTRAL SPECIES 126 ENSGT00940000153118.db.b ENSGT01100000263559.A.f #25 ENSGT00940000153092.a.a ENSGT00940000156302 ENSGT01100000263559.B #32 ENSGT01100000263569.a.b.b ENSGT00940000164494 ENSGT01060000248528.a.b.a.a.a.b Mammalia ANCESTRAL SPECIES 161 ENSGT00940000156302 ENSGT01100000263559.B #32 ENSGT01100000263569.a.b.b ENSGT00940000164494 ENSGT01060000248528.a.b.a.a.a.b Theria ANCESTRAL SPECIES 69 ENSGT01100000263474.a.b.a.d #36 ENSGT01060000248528.b.jh.b ENSGT01100000263514.A.e.a ENSGT01060000248528.b.jh.a.b ENSGT01100000263504.a.b.b.b.b ENSGT00940000160426 ENSGT01100000263575.A ENSGT00940000153125.D ENSGT01100000263506.a.e.a #14 ENSGT01060000248528.b.kh ENSGT01100000263474.a.b.b ##36 ENSGT00940000153092.a.a ENSGT01100000263559.A.f #25 ENSGT01100000263575.B ENSGT00940000156302 ENSGT01100000263559.B #32 ENSGT01100000263569.a.b.b ENSGT00940000164494 ENSGT01060000248528.a.b.a.a.a.b Eutheria ANCESTRAL SPECIES 38 ENSGT00940000162346 ENSGT00940000162523 ENSGT00940000161926 ENSGT00940000160468 ENSGT00940000163269 ENSGT01100000263514.A.e.a.b.a.b.a.a.a.a ENSGT00940000155501.a.b ENSGT01060000248528.b.kh ENSGT01100000263506.a.e.a.a.a.b.a.a.b.a.a #14 ENSGT01100000263474.a.b.b.e.a.a.b ##36 ENSGT00940000153118.db.a.b ENSGT01100000263506.a.e.a.a.a.b.a.a.b.b #14 ENSGT01100000263575.B ENSGT00940000156302 ENSGT01100000263559.B #32 ENSGT01100000263569.a.b.b ENSGT00940000164494 ENSGT01060000248528.a.b.a.a.a.b ENSGT00940000163082 ENSGT01100000263517.b.d.m.a.a.b ENSGT00940000158017 ENSGT00940000161530 ENSGT00950000182802.B.a.a.b ENSGT00390000002062 ENSGT00940000153092.a.a.d ENSGT01100000263504.a.b.b.b.b ENSGT01060000248528.b.jh.a.b ENSGT01100000263506.a.e.a.a.a.a.b.a #14 ENSGT00940000153125.A ENSGT01100000263514.A.e.a.b.a.b.a.a.a.b.a.a.a.a Atlantogenata ANCESTRAL SPECIES 66 ENSGT00390000018360 ENSGT00390000003103 ENSGT00390000002049.c.a ENSGT00940000156893 ENSGT00950000182907.a.a ENSGT00530000063760.b ENSGT00550000075028 ENSGT00940000159172 ENSGT00940000160276 ENSGT00870000136537 ENSGT00950000182940.b.a.b ENSGT00510000048165 ENSGT00940000153118.db.a.a.b.a.b ENSGT01100000263575.B ENSGT00940000156302 ENSGT01100000263559.B #32 Afrotheria ANCESTRAL SPECIES 286 ENSGT01100000263575.B ENSGT00940000156302 ENSGT01100000263559.B #32 Afrotheria_a ANCESTRAL SPECIES 287 ENSGT01100000263575.B ENSGT00940000156302 ENSGT01100000263559.B #32 Elephant DUPLICATION Elephant MODERN SPECIES 26 MFSD14A (ENSLAFG00000032648) SLC35A3 (ENSLAFG00000007403) AGL (ENSLAFG00000000619) FRRS1 (ENSLAFG00000010929) PALMD (ENSLAFG00000005199) ENSLAFG00000031707 ENSLAFG00000029191 ENSLAFG00000018352 H2BC18 (ENSLAFG00000031442) #14 ENSLAFG00000029272 ENSLAFG00000026296 ENSLAFG00000025802 #32 ENSLAFG00000029422 ENSLAFG00000021961 ENSLAFG00000027548 ENSLAFG00000029983 #32 H2BC21 (ENSLAFG00000007572) ENSLAFG00000031642 H2AC21 (ENSLAFG00000001481) BOLA1 (ENSLAFG00000008527) SV2A (ENSLAFG00000008529) SF3B4 (ENSLAFG00000008531) MTMR11 (ENSLAFG00000008533) OTUD7B (ENSLAFG00000026624) VPS45 (ENSLAFG00000018411) PLEKHO1 (ENSLAFG00000018415) ANP32E (ENSLAFG00000026778) CA14 (ENSLAFG00000004703) APH1A (ENSLAFG00000004705) C1orf54 (ENSLAFG00000022852) CIART (ENSLAFG00000002729) Elephant MODERN SPECIES 26 ANP32E (ENSLAFG00000026778) PLEKHO1 (ENSLAFG00000018415) VPS45 (ENSLAFG00000018411) OTUD7B (ENSLAFG00000026624) MTMR11 (ENSLAFG00000008533) SF3B4 (ENSLAFG00000008531) SV2A (ENSLAFG00000008529) BOLA1 (ENSLAFG00000008527) H2AC21 (ENSLAFG00000001481) ENSLAFG00000031642 H2BC21 (ENSLAFG00000007572) ENSLAFG00000029983 #32 ENSLAFG00000027548 ENSLAFG00000021961 ENSLAFG00000029422 ENSLAFG00000025802 #32 ENSLAFG00000026296 ENSLAFG00000029272 H2BC18 (ENSLAFG00000031442) #14 ENSLAFG00000018352 ENSLAFG00000029191 ENSLAFG00000031707 PALMD (ENSLAFG00000005199) FRRS1 (ENSLAFG00000010929) AGL (ENSLAFG00000000619) SLC35A3 (ENSLAFG00000007403) MFSD14A (ENSLAFG00000032648) SASS6 (ENSLAFG00000002382) TRMT13 (ENSLAFG00000002383) LRRC39 (ENSLAFG00000002386) DBT (ENSLAFG00000006373) Tenrec MODERN SPECIES 15603 ENSETEG00000012263 #32 Xenarthra ANCESTRAL SPECIES 790 ENSGT01100000263575.A ENSGT00940000156302 ENSGT01100000263559.B #32 ENSGT01100000263575.B ENSGT00940000153118.db.a.a.b.a.a ENSGT00940000162350.b.b ENSGT00390000013440 Sloth MODERN SPECIES 12818 ENSCHOG00000000565 #32 H2BC21 (ENSCHOG00000000567) H2AC20 (ENSCHOG00000000570) H2AC21 (ENSCHOG00000000571) Armadillo MODERN SPECIES 1834 ANP32E (ENSDNOG00000034773) PLEKHO1 (ENSDNOG00000041988) VPS45 (ENSDNOG00000013685) OTUD7B (ENSDNOG00000039147) MTMR11 (ENSDNOG00000002431) ENSDNOG00000048908 SV2A (ENSDNOG00000030740) BOLA1 (ENSDNOG00000000839) H2AC21 (ENSDNOG00000037547) ENSDNOG00000043400 ENSDNOG00000037369 ENSDNOG00000043843 ENSDNOG00000040113 ENSDNOG00000036815 ENSDNOG00000031169 H3C14 (ENSDNOG00000040427) #32 H2BC18 (ENSDNOG00000041447) #14 ENSDNOG00000037158 FCGR1A (ENSDNOG00000035779) ENSDNOG00000039714 ENSDNOG00000040102 Boreoeutheria ANCESTRAL SPECIES 7 ENSGT00940000163102 ENSGT00940000159644 ENSGT00940000163521 ENSGT00940000161576 ENSGT00940000163165 ENSGT00940000163388 ENSGT00940000163486 ENSGT01100000263486.a.b.a.a.a.a.a.b.a.b.b.b ENSGT01100000263486.a.b.a.a.a.a.a.b.a.b.b.a ENSGT01100000263486.a.b.a.b.a ENSGT01100000263486.a.b.b ENSGT01100000263486.a.a ENSGT01100000263548.a.b.b ENSGT01100000263575.B.u ENSGT00940000156302 ENSGT01100000263559.B #32 ENSGT01060000248528.b.kh.yb ENSGT01100000263474.a.b.b.e.a.a.a.b ##36 ENSGT00940000155501.a.a ENSGT00940000153092.a.b.f ENSGT01100000263506.a.e.a.a.a.b.a.a.b.a.b.a.a.a #14 ENSGT00940000162941 ENSGT00940000153104.e.b.a.b ENSGT00940000153253.b.a.h ENSGT00940000160281 ENSGT00940000153125.C ENSGT01100000263506.a.e.a.a.a.a.b.b #14 ENSGT01100000263474.a.b.b.f ##36 ENSGT00940000153125.D.a.b ENSGT01100000263506.a.e.a.a.a.b.b.b #14 ENSGT00940000162956 Euarchontoglires ANCESTRAL SPECIES 7 ENSGT00940000153125.D.a.b ENSGT01100000263506.a.e.a.a.a.a.b.b #14 ENSGT00940000153125.C ENSGT00940000160281 ENSGT00940000153104.e.b.a.b ENSGT00940000162941 ENSGT01100000263506.a.e.a.a.a.b.a.a.b.a.b.a.a.a #14 ENSGT00940000153092.a.b.f ENSGT00940000155501.a.a ENSGT01100000263474.a.b.b.e.a.a.a.b ##36 ENSGT00940000162950 ENSGT01100000263514.A.e.a.b.a.b.a.a.a.a ENSGT00940000153092.a.a.c.a.a ENSGT01100000263575.A ENSGT00940000156302 ENSGT01100000263559.B #32 ENSGT01100000263506.a.e.a.a.b.a #14 ENSGT01100000263474.a.b.a.d #36 ENSGT01060000248528.b.jh.b ENSGT01100000263514.A.e.a.b.a.b.a.a.b ENSGT00940000160426 ENSGT01100000263575.B.u ENSGT01100000263548.a.b.b ENSGT01100000263486.a.a ENSGT00940000163388 ENSGT00940000163165 ENSGT00940000161576 ENSGT00940000163521 ENSGT00940000159644 ENSGT00940000163102 ENSGT00940000162298 Euarchontoglires_A ANCESTRAL SPECIES ENSGT01050000244841.A.a.b ENSGT00730000111185 ENSGT00390000005869.a ENSGT00390000012355.B.b ENSGT01060000248645 ENSGT00940000158522 ENSGT00950000183112.b.b ENSGT00420000029746.f ENSGT00950000183190.a.b.a.b ENSGT01050000244808.A.b.b.a ENSGT01100000263506.a.e.b #14 ENSGT01100000263559.A.f.e #25 ENSGT00940000153092.a.a.c.a.a ENSGT01100000263575.A ENSGT00940000156302 ENSGT01100000263559.B #32 ENSGT01100000263575.B.u ENSGT00940000153118.db.a.a.b.a.a ENSGT00940000153118.db.a.a.b.a.b ENSGT00510000048165 ENSGT00950000182940.b.a.b ENSGT00870000136537 ENSGT00940000160276 ENSGT00940000159172 ENSGT00550000075028 ENSGT00530000063760.b ENSGT00950000182907.a.a ENSGT00940000156893 ENSGT00390000002049.c.a ENSGT00390000003103 ENSGT00390000018360 Tree shrew MODERN SPECIES 2461 H3C14 (ENSTBEG00000015119) #32 ENSTBEG00000015112 H2BC18 (ENSTBEG00000015103) #14 FCGR1A (ENSTBEG00000015034) Glires ANCESTRAL SPECIES ENSGT01050000244841.A.a.b ENSGT00730000111185 ENSGT00390000005869.a ENSGT00390000012355.B.b ENSGT01060000248645 ENSGT00940000158522 ENSGT00950000183112.b.b ENSGT00420000029746.f ENSGT00950000183190.a.b.a.b ENSGT01050000244808.A.b.b.a ENSGT01100000263506.a.e.b #14 ENSGT01100000263559.A.f.e #25 ENSGT00940000153092.a.a.c.a.a ENSGT01100000263575.A ENSGT00940000156302 ENSGT01100000263559.B #32 ENSGT01100000263575.B.u ENSGT00940000153118.db.a.a.b.a.a ENSGT00940000153118.db.a.a.b.a.b ENSGT00510000048165 ENSGT00950000182940.b.a.b ENSGT00870000136537 ENSGT00940000160276 ENSGT00940000159172 ENSGT00550000075028 ENSGT00530000063760.b ENSGT00950000182907.a.a ENSGT00940000156893 ENSGT00390000002049.c.a ENSGT00390000003103 ENSGT00390000018360 Lagomorpha ANCESTRAL SPECIES 1 ENSGT00530000063074.a ENSGT00940000158423 ENSGT00390000014273.b ENSGT00730000111185 ENSGT00390000005869.a ENSGT00390000012355.B.b ENSGT01060000248645 ENSGT00940000158522 ENSGT00950000183112.b.b ENSGT00420000029746.f ENSGT00950000183190.a.b.a.b ENSGT01050000244808.A.b.b.a ENSGT01100000263506.a.e.b #14 ENSGT01100000263559.A.f.e #25 ENSGT00940000156302 ENSGT01100000263559.B #32 ENSGT01100000263575.B.u ENSGT00940000153118.db.a.a.b.a.a ENSGT00940000153118.db.a.a.b.a.b ENSGT00510000048165 ENSGT00950000182940.b.a.b ENSGT00870000136537 ENSGT00940000160276 ENSGT00940000159172 ENSGT00550000075028 ENSGT00530000063760.b ENSGT00950000182907.a.a ENSGT00940000156893 ENSGT00390000002049.c.a ENSGT00390000003103 ENSGT00390000018360 Pika DUPLICATION Pika MODERN SPECIES 4549 ENSOPRG00000010762 #25 ENSOPRG00000010770 ENSOPRG00000010773 H3C15 (ENSOPRG00000010778) #32 H2BC21 (ENSOPRG00000010785) H2AC20 (ENSOPRG00000010787) H2AC21 (ENSOPRG00000010790) BOLA1 (ENSOPRG00000010793) SV2A (ENSOPRG00000010799) SF3B4 (ENSOPRG00000010808) MTMR11 (ENSOPRG00000010825) OTUD7B (ENSOPRG00000010849) VPS45 (ENSOPRG00000010903) PLEKHO1 (ENSOPRG00000010923) Pika MODERN SPECIES 4845 ENSOPRG00000012610 ENSOPRG00000012606 #32 H2BC18 (ENSOPRG00000012604) #14 ENSOPRG00000012597 Rodentia ANCESTRAL SPECIES 6 ENSGT01100000263506.a.e.a.a.b.a #14 ENSGT01060000248528.b.kh.xb.b.b ENSGT01100000263506.a.f.b #14 ENSGT01060000248528.b.kh.yb.a.a ENSGT01100000263506.a.e.a.a.a.b.a.a.b.a.b.a.a.a #14 ENSGT00940000153092.a.b.f ENSGT00940000155501.a.a ENSGT01100000263474.a.b.b.e.a.a.a.a ##36 ENSGT01060000248528.b.kh.xb.b.a ENSGT01060000248528.b.jh.a.a.a ENSGT00940000153118.db.b ENSGT01100000263559.A.f.e #25 ENSGT00940000153092.a.a.c.a.a ENSGT01100000263575.A ENSGT00940000156302 ENSGT01100000263559.B #32 ENSGT00940000163082 ENSGT01100000263517.b.d.m.a.a.b ENSGT00940000162723 ENSGT00940000158017 ENSGT00940000161530 ENSGT00950000182802.B.a.a.b ENSGT00390000002062 ENSGT01030000234553.b.b.c.b.b.c ENSGT01030000234553.b.b.c.b.a ENSGT00940000162956 ENSGT01100000263506.a.e.a.a.a.b.a.a.b.a.b.b #14 ENSGT00940000153125.F.g ENSGT00940000160281 ENSGT00940000153253.b.a.h ENSGT00940000162941 Rodentia_B ANCESTRAL SPECIES 8 ENSGT00940000161385 ENSGT01100000263474.a.a.c.b ##36 ENSGT00940000160894 ENSGT00940000162346 ENSGT00940000162523 ENSGT00940000161926 ENSGT00940000160468 ENSGT00940000163269 ENSGT01100000263514.A.e.a.b.a.b.a.a.a.b.a.b ENSGT01100000263514.A.e.a.b.a.b.a.a.a.a ENSGT01060000248528.b.jh.b ENSGT01100000263506.a.f.b #14 ENSGT01060000248528.b.kh.yb.a.a ENSGT01100000263506.a.e.a.a.a.b.a.a.b.a.b.a.a.a.p #14 ENSGT00940000153092.a.a.c.a.a ENSGT01100000263559.B #32 ENSGT00940000163082 ENSGT01100000263517.b.d.m.a.a.b ENSGT01060000248528.b.jh.a.a.a ENSGT01060000248528.b.jh.a.b ENSGT01100000263474.a.b.a.d #36 ENSGT01100000263506.a.e.a.a.b.a #14 ENSGT01060000248528.b.kh.xb.b.b ENSGT00940000163525 ENSGT01100000263506.a.e.a.a.a.b.a.a.b.a.a #14 ENSGT00940000155501.a.a ENSGT01100000263506.a.e.a.a.a.b.a.a.b.a.b.b #14 ENSGT01100000263506.a.e.a.a.a.b.a.a.b.a.b.a.a.a.o.b #14 ENSGT00940000153092.a.b.f ENSGT01100000263514.A.e.a.a.b ENSGT00940000162950 Kangaroo rat MODERN SPECIES 523 Btn1a1 (ENSDORG00000000452) Btn2a2 (ENSDORG00000000451) ENSDORG00000030035 ENSDORG00000023996 #14 ENSDORG00000025950 ENSDORG00000025258 ENSDORG00000024715 #14 ENSDORG00000024928 #14 H1f4 (ENSDORG00000005256) ENSDORG00000027998 ENSDORG00000025947 #14 ENSDORG00000005251 ENSDORG00000025836 #25 ENSDORG00000027130 ENSDORG00000027742 ENSDORG00000028336 #32 ENSDORG00000025727 H1f1 (ENSDORG00000005238) Slc17a2 (ENSDORG00000014558) Slc17a1 (ENSDORG00000014554) Slc17a4 (ENSDORG00000011816) H2bc1 (ENSDORG00000024877) ##36 Scgn (ENSDORG00000013668) Carmil1 (ENSDORG00000013666) Cmah (ENSDORG00000007165) Ripor2 (ENSDORG00000014570) Gmnn (ENSDORG00000014569) BC005537 (ENSDORG00000024875) Acot13 (ENSDORG00000006685) Tdp2 (ENSDORG00000006684) ENSDORG00000006683 Myomorpha ANCESTRAL SPECIES 11 ENSGT00940000161385 ENSGT01100000263474.a.a.c.b ##36 ENSGT00940000160894 ENSGT00940000162346 ENSGT00940000162523 ENSGT00940000161926 ENSGT00940000160468 ENSGT00940000163269 ENSGT01100000263514.A.e.a.b.a.b.a.a.a.b.a.b ENSGT01100000263514.A.e.a.b.a.b.a.a.a.a ENSGT01060000248528.b.jh.b ENSGT01100000263506.a.f.b #14 ENSGT01060000248528.b.kh.yb.a.a ENSGT01100000263506.a.e.a.a.a.b.a.a.b.a.b.a.a.a.p #14 ENSGT00940000153092.a.a.c.a.a ENSGT01100000263559.B #32 ENSGT00940000163082 ENSGT01100000263517.b.d.m.a.a.b ENSGT01060000248528.b.jh.a.a.a ENSGT01060000248528.b.jh.a.b ENSGT01100000263474.a.b.a.d #36 ENSGT01100000263506.a.e.a.a.b.a #14 ENSGT01060000248528.b.kh.xb.b.b ENSGT00940000163525 ENSGT01100000263506.a.e.a.a.a.b.a.a.b.a.a #14 ENSGT00940000153092.a.b.f ENSGT01100000263514.A.e.a.a.b ENSGT00940000162950 ENSGT01100000263506.a.e.a.a.a.b.a.a.b.a.b.a.a.a.o.a #14 ENSGT00940000155501.a.a ENSGT01100000263506.a.e.a.a.a.b.a.a.b.a.b.a.a.a.o.b #14 Lesser Egyptian jerboa MODERN SPECIES 194 ENSJJAG00000013504 ENSJJAG00000017822 ENSJJAG00000013528 #14 ENSJJAG00000013454 ENSJJAG00000015919 Btn2a2 (ENSJJAG00000015456) Btn1a1 (ENSJJAG00000013358) Abt1 (ENSJJAG00000012693) ENSJJAG00000005342 ENSJJAG00000022549 ENSJJAG00000016030 Prss16 (ENSJJAG00000015051) Pom121l2 (ENSJJAG00000014729) Zfp184 (ENSJJAG00000000455) ENSJJAG00000000223 ENSJJAG00000012933 #32 ENSJJAG00000012941 ENSJJAG00000013681 ENSJJAG00000013718 ENSJJAG00000021608 ENSJJAG00000013582 Zkscan8 (ENSJJAG00000013713) ENSJJAG00000012048 ENSJJAG00000011972 ENSJJAG00000011413 Zscan26 (ENSJJAG00000010881) ENSJJAG00000004576 Gpx6 (ENSJJAG00000000873) ENSJJAG00000000066 Trim27 (ENSJJAG00000022382) ENSJJAG00000013062 Muroidea ANCESTRAL SPECIES 15 ENSGT00940000162523 ENSGT00940000161926 ENSGT00940000160468 ENSGT00940000163269 ENSGT01100000263514.A.e.a.b.a.b.a.a.a.b.a.b ENSGT01100000263514.A.e.a.b.a.b.a.a.a.a ENSGT01060000248528.b.jh.b ENSGT01060000248528.b.kh.yb.a.a ENSGT01100000263506.a.f.b #14 ENSGT01060000248528.b.jh.a.a.a ENSGT01060000248528.b.kh.xb.b.a ENSGT01100000263474.a.b.b.e.a.a.a.a ##36 ENSGT00940000153092.a.a.c.a.a.f.b ENSGT01100000263559.A.f.e #25 ENSGT00940000160426 ENSGT01100000263559.B #32 ENSGT00940000163082 ENSGT01100000263517.b.d.m.a.a.b ENSGT01060000248528.b.kh.yb.b ENSGT01100000263506.a.e.a.a.a.b.a.a.b.a.b.a.a.a.p #14 ENSGT00940000153092.a.b.f ENSGT00940000155501.a.a ENSGT01100000263506.a.e.a.a.a.b.a.a.b.a.b.a.a.a.o.b #14 ENSGT00940000158017 ENSGT00940000161530 ENSGT00390000002062 ENSGT00940000160281 ENSGT00940000153253.b.a.h ENSGT00940000164849 ENSGT01100000263486.a.a ENSGT01100000263548.a.b.b Upper Galilee mountains blind mole rat DUPLICATION Upper Galilee mountains blind mole rat MODERN SPECIES 769 ENSNGAG00000020628 #32 ENSNGAG00000012803 ENSNGAG00000009633 ENSNGAG00000008922 ##36 ENSNGAG00000018017 ENSNGAG00000017761 #25 ENSNGAG00000017588 H1f4 (ENSNGAG00000001403) ENSNGAG00000019522 ENSNGAG00000017064 #14 H1f6 (ENSNGAG00000010517) ENSNGAG00000010665 Hfe (ENSNGAG00000016849) H1f2 (ENSNGAG00000004187) ENSNGAG00000007331 ENSNGAG00000010646 #32 ENSNGAG00000009026 ENSNGAG00000010543 ENSNGAG00000011159 #32 H1f1 (ENSNGAG00000007966) Slc17a2 (ENSNGAG00000022747) Slc17a3 (ENSNGAG00000001190) Slc17a1 (ENSNGAG00000008612) Slc17a4 (ENSNGAG00000017264) H2bc1 (ENSNGAG00000007052) ##36 Scgn (ENSNGAG00000019333) Carmil1 (ENSNGAG00000023801) Upper Galilee mountains blind mole rat MODERN SPECIES 769 Carmil1 (ENSNGAG00000023801) Scgn (ENSNGAG00000019333) H2bc1 (ENSNGAG00000007052) ##36 Slc17a4 (ENSNGAG00000017264) Slc17a1 (ENSNGAG00000008612) Slc17a3 (ENSNGAG00000001190) Slc17a2 (ENSNGAG00000022747) H1f1 (ENSNGAG00000007966) ENSNGAG00000011159 #32 ENSNGAG00000010543 ENSNGAG00000009026 ENSNGAG00000010646 #32 ENSNGAG00000007331 H1f2 (ENSNGAG00000004187) Hfe (ENSNGAG00000016849) ENSNGAG00000010665 H1f6 (ENSNGAG00000010517) ENSNGAG00000017064 #14 ENSNGAG00000019522 H1f4 (ENSNGAG00000001403) ENSNGAG00000017588 ENSNGAG00000017761 #25 ENSNGAG00000018017 ENSNGAG00000008922 ##36 Upper Galilee mountains blind mole rat DUPLICATION Upper Galilee mountains blind mole rat MODERN SPECIES 516 ENSNGAG00000001558 ENSNGAG00000005140 ENSNGAG00000005469 #14 ENSNGAG00000004855 ENSNGAG00000006564 #32 ENSNGAG00000004217 ENSNGAG00000003052 ENSNGAG00000002502 ENSNGAG00000002100 ENSNGAG00000020779 #25 ENSNGAG00000002211 ##36 ENSNGAG00000003563 H2ac24 (ENSNGAG00000003629) ENSNGAG00000001601 ##36 ENSNGAG00000018047 ENSNGAG00000016925 Prss16 (ENSNGAG00000017902) ENSNGAG00000018408 ENSNGAG00000001327 #14 ENSNGAG00000018350 Upper Galilee mountains blind mole rat MODERN SPECIES 494 ENSNGAG00000022884 ENSNGAG00000014133 #32 Bbs10 (ENSNGAG00000022298) Osbpl8 (ENSNGAG00000014231) Zdhhc17 (ENSNGAG00000009049) ENSNGAG00000023257 E2f7 (ENSNGAG00000023644) ENSNGAG00000024182 Nav3 (ENSNGAG00000024210) Syt1 (ENSNGAG00000020988) Pawr (ENSNGAG00000015922) Ppp1r12a (ENSNGAG00000023300) ENSNGAG00000024231 Otogl (ENSNGAG00000022483) Ptprq (ENSNGAG00000024172) Myf6 (ENSNGAG00000023390) Myf5 (ENSNGAG00000003539) Upper Galilee mountains blind mole rat MODERN SPECIES 1243 Plekho1 (ENSNGAG00000002001) ENSNGAG00000005098 Vps45 (ENSNGAG00000001159) Otud7b (ENSNGAG00000019612) Mtmr11 (ENSNGAG00000015085) Sf3b4 (ENSNGAG00000016337) Sv2a (ENSNGAG00000024242) Bola1 (ENSNGAG00000024327) H2ac21 (ENSNGAG00000011111) H2ac20 (ENSNGAG00000011075) ENSNGAG00000023599 ENSNGAG00000011353 #14 ENSNGAG00000012728 ENSNGAG00000004233 #25 ENSNGAG00000020540 #25 ENSNGAG00000012113 #32 Fcgr1 (ENSNGAG00000016194) Upper Galilee mountains blind mole rat MODERN SPECIES 769 ENSNGAG00000010646 #32 ENSNGAG00000007331 H1f2 (ENSNGAG00000004187) Hfe (ENSNGAG00000016849) ENSNGAG00000010665 H1f6 (ENSNGAG00000010517) ENSNGAG00000017064 #14 ENSNGAG00000019522 H1f4 (ENSNGAG00000001403) ENSNGAG00000017588 ENSNGAG00000017761 #25 ENSNGAG00000018017 ENSNGAG00000008922 ##36 ENSNGAG00000009633 ENSNGAG00000012803 ENSNGAG00000020628 #32 ENSNGAG00000006078 #32 ENSNGAG00000017262 #25 ENSNGAG00000018828 ENSNGAG00000018460 #14 ENSNGAG00000017676 Btn2a2 (ENSNGAG00000005096) Btn1a1 (ENSNGAG00000016601) Abt1 (ENSNGAG00000011004) Zfp322a (ENSNGAG00000018458) ENSNGAG00000019499 ENSNGAG00000017772 Upper Galilee mountains blind mole rat MODERN SPECIES 769 ENSNGAG00000017772 ENSNGAG00000019499 Zfp322a (ENSNGAG00000018458) Abt1 (ENSNGAG00000011004) Btn1a1 (ENSNGAG00000016601) Btn2a2 (ENSNGAG00000005096) ENSNGAG00000017676 ENSNGAG00000018460 #14 ENSNGAG00000018828 ENSNGAG00000017262 #25 ENSNGAG00000006078 #32 ENSNGAG00000020628 #32 ENSNGAG00000012803 ENSNGAG00000009633 ENSNGAG00000008922 ##36 ENSNGAG00000018017 ENSNGAG00000017761 #25 ENSNGAG00000017588 H1f4 (ENSNGAG00000001403) ENSNGAG00000019522 ENSNGAG00000017064 #14 H1f6 (ENSNGAG00000010517) ENSNGAG00000010665 Hfe (ENSNGAG00000016849) H1f2 (ENSNGAG00000004187) ENSNGAG00000007331 Muroidea_A ANCESTRAL SPECIES 14 ENSGT01100000263474.a.a.c.b ##36 ENSGT00940000160894 ENSGT00940000162346 ENSGT00940000162523 ENSGT00940000161926 ENSGT00940000160468 ENSGT00940000163269 ENSGT01100000263514.A.e.a.b.a.b.a.a.a.b.a.b ENSGT01100000263514.A.e.a.b.a.b.a.a.b ENSGT01100000263514.A.e.a.a.b ENSGT00940000162950 ENSGT01100000263506.a.e.a.a.a.b.a.a.b.a.b.a.a.a.o.a #14 ENSGT00940000153092.a.a.c.a.a.g ENSGT01100000263514.A.e.a.b.a.b.a.a.a.b.a.a.a.a ENSGT01100000263474.a.b.b.e.a.a.a.a ##36 ENSGT01100000263559.B #32 ENSGT00940000163082 ENSGT01100000263517.b.d.m.a.a.b ENSGT01060000248528.b.kh.yb.b ENSGT00940000163525 ENSGT01100000263506.a.e.a.a.a.b.a.a.b.a.a #14 ENSGT01100000263506.a.e.a.a.a.b.a.a.b.a.b.a.a.a.p #14 ENSGT00940000153092.a.b.f ENSGT00940000155501.a.a ENSGT01100000263506.a.f.b.p.b #14 ENSGT01060000248528.b.kh.yb.a.a ENSGT01100000263506.a.e.a.a.a.b.a.a.b.a.b.a.a.a.o.b #14 ENSGT01100000263506.a.e.a.a.a.b.a.a.b.a.b.b #14 ENSGT01060000248528.b.jh.b ENSGT01100000263514.A.e.a.b.a.b.a.a.a.a ENSGT01100000263506.a.e.a.a.a.a.b.b #14 Murinae ANCESTRAL SPECIES 5 ENSGT00530000063760.b ENSGT00550000075028 ENSGT00940000159172 ENSGT00940000160276 ENSGT00870000136537 ENSGT00950000182940.b.a.b ENSGT00510000048165 ENSGT00940000153118.db.a.a.b.a.b ENSGT00940000153118.db.a.a.b.a.a ENSGT01100000263506.a.e.a.a.a.b.b.b #14 ENSGT01060000248528.b.kh.xb.a.b ENSGT01100000263559.A.f.d.a.a #25 ENSGT00940000156302 ENSGT01060000248528.b.kh.yb.a.b ENSGT01100000263559.A.f.e #25 ENSGT01100000263559.B #32 ENSGT01100000263506.a.e.b #14 ENSGT01050000244808.A.b.b.a ENSGT00950000183112.b.b ENSGT00940000158522 ENSGT00940000165934 ENSGT00390000012355.B.b ENSGT00390000005869.a ENSGT00730000111185 ENSGT00390000014273.b ENSGT00940000158423 ENSGT00530000063074.a ENSGT01030000234539.a.a.b.a.a ENSGT00390000013847 ENSGT00390000002799 ENSGT00940000157203 Rat DUPLICATION Rat MODERN SPECIES 8 Hist2h4 (ENSRNOG00000054017) Hist1h2ac (ENSRNOG00000070462) ENSRNOG00000066901 ##36 ENSRNOG00000067427 ENSRNOG00000068380 AABR07027878.1 (ENSRNOG00000052387) Zfp322a (ENSRNOG00000017318) Abt1 (ENSRNOG00000017585) Btn1a1 (ENSRNOG00000017514) Btn2a2 (ENSRNOG00000038877) Hist1h4m (ENSRNOG00000064025) Hist1h2bg (ENSRNOG00000070362) #14 LOC120097726 (ENSRNOG00000069245) Hist1h3b (ENSRNOG00000068516) LOC100910200 (ENSRNOG00000064011) #14 LOC102548682 (ENSRNOG00000064521) #32 hist1h2ail2 (ENSRNOG00000067434) H4f3 (ENSRNOG00000048264) Hist1h4m (ENSRNOG00000070513) H1f4 (ENSRNOG00000047459) AC130391.3 (ENSRNOG00000053025) Hist1h2bq (ENSRNOG00000069578) #14 H1f6 (ENSRNOG00000061863) Hist1h4m (ENSRNOG00000070706) Hfe (ENSRNOG00000016967) H1f2 (ENSRNOG00000067441) Hist1h2af (ENSRNOG00000022146) H3c13 (ENSRNOG00000065054) #25 LOC102549173 (ENSRNOG00000066835) #25 Hist1h4m (ENSRNOG00000065263) Hist1h3b (ENSRNOG00000068614) Rat MODERN SPECIES 11 Ciart (ENSRNOG00000042717) C2H1orf54 (ENSRNOG00000059750) Aph1a (ENSRNOG00000023816) Car14 (ENSRNOG00000023162) Anp32e (ENSRNOG00000021168) RGD1562196 (ENSRNOG00000065202) Plekho1 (ENSRNOG00000021170) Vps45 (ENSRNOG00000021173) Otud7b (ENSRNOG00000042068) Mtmr11 (ENSRNOG00000021176) Sf3b4 (ENSRNOG00000021181) Sv2a (ENSRNOG00000021182) Bola1 (ENSRNOG00000021185) ENSRNOG00000062927 LOC102549173 (ENSRNOG00000068046) #25 LOC102549173 (ENSRNOG00000065886) #32 Hist1h4b (ENSRNOG00000032224) Hist2h3c2 (ENSRNOG00000063016) #25 H2bc18 (ENSRNOG00000070591) #14 Fcgr1a (ENSRNOG00000021199) ENSRNOG00000069676 AABR07012587.1 (ENSRNOG00000002223) AABR07012588.1 (ENSRNOG00000059842) Hjv (ENSRNOG00000021200) AABR07012592.1 (ENSRNOG00000037223) Txnip (ENSRNOG00000021201) Polr3gl (ENSRNOG00000021209) ENSRNOG00000069895 Ankrd34a (ENSRNOG00000033741) Lix1l (ENSRNOG00000021213) Rbm8a (ENSRNOG00000021215) Mus ANCESTRAL SPECIES 7 ENSGT00530000063760.b ENSGT00550000075028 ENSGT00940000159172 ENSGT00940000160276 ENSGT00870000136537 ENSGT00950000182940.b.a.b ENSGT00510000048165 ENSGT00940000153118.db.a.a.b.a.b ENSGT00940000153118.db.a.a.b.a.a ENSGT01100000263506.a.e.a.a.a.b.b.b #14 ENSGT01060000248528.b.kh.xb.a.b ENSGT01100000263559.A.f.d.a.a #25 ENSGT00940000156302 ENSGT01060000248528.b.kh.yb.a.b ENSGT01100000263559.A.f.e #25 ENSGT01100000263559.B #32 ENSGT01100000263506.a.e.b #14 ENSGT01050000244808.A.b.b.a ENSGT00950000183112.b.b ENSGT00940000158522 ENSGT00860000135842 ENSGT00940000165934 ENSGT00390000012355.B.b ENSGT00390000005869.a ENSGT00730000111185 ENSGT00390000014273.b ENSGT00940000158423.c ENSGT00530000063074.a ENSGT01030000234539.a.a.b.a.a ENSGT00390000013847 ENSGT00390000002799 Mus_A ANCESTRAL SPECIES 14 ENSGT00940000153092.a.a.d.e.b ENSGT01100000263559.A.f.d.b #25 ENSGT00940000163082 ENSGT01100000263517.b.d.m.a.a.b ENSGT01060000248528.b.jh.a.a.a ENSGT00940000163525 ENSGT01100000263506.a.e.a.a.a.b.a.a.b.a.b.a.a.b #14 ENSGT00940000155501.a.a ENSGT01100000263514.A.f ENSGT00940000155501.a.b ENSGT01060000248528.b.jh.b ENSGT01100000263506.a.f.b.p.b #14 ENSGT01060000248528.b.kh.yb.a.a ENSGT01100000263506.a.e.a.a.a.b.a.a.b.a.b.a.a.a.p #14 ENSGT00940000153092.a.a.c.a.a.g ENSGT01100000263559.B #32 ENSGT01060000248528.b.jh.a.a.b ENSGT01100000263514.A.e.a.b.a.b.a.a.a.a ENSGT01060000248528.b.kh.yb.b ENSGT00940000158017 ENSGT00940000161530 ENSGT00390000002062 ENSGT00940000162956 ENSGT01030000234553.b.b.c.b.a.a.b.a.b.a ENSGT01030000234553.b.b.c.b.a.a.b.a.a.a.a.a.b.b.a ENSGT01030000234553.b.b.c.b.b.c.b.a.b.b ENSGT01030000234553.b.b.c.b.b.c.a.a.b.a.b ENSGT01030000234553.b.b.c.b.b.c.b.b.b ENSGT01030000234553.b.b.c.b.a.a.b.a.a.b.b ENSGT01030000234553.b.b.c.b.b.c.a.a.b.b ENSGT01030000234553.b.b.c.b.a.b.c Ryukyu mouse DUPLICATION Ryukyu mouse MODERN SPECIES 4 MGP_CAROLIEiJ_G0018320 MGP_CAROLIEiJ_G0018321 MGP_CAROLIEiJ_G0018322 MGP_CAROLIEiJ_G0018323 #14 MGP_CAROLIEiJ_G0018324 MGP_CAROLIEiJ_G0018325 #14 H1f4 (MGP_CAROLIEiJ_G0018326) MGP_CAROLIEiJ_G0018327 #14 H1f6 (MGP_CAROLIEiJ_G0018328) MGP_CAROLIEiJ_G0018329 Hfe (MGP_CAROLIEiJ_G0018330) H1f2 (MGP_CAROLIEiJ_G0018331) MGP_CAROLIEiJ_G0018332 #32 H2bc3 (MGP_CAROLIEiJ_G0018333) #14 MGP_CAROLIEiJ_G0018334 MGP_CAROLIEiJ_G0018335 #32 MGP_CAROLIEiJ_G0018336 MGP_CAROLIEiJ_G0018337 MGP_CAROLIEiJ_G0018338 H1f1 (MGP_CAROLIEiJ_G0018339) Trim38 (MGP_CAROLIEiJ_G0018340) Slc17a2 (MGP_CAROLIEiJ_G0018341) Slc17a3 (MGP_CAROLIEiJ_G0018342) Slc17a1 (MGP_CAROLIEiJ_G0018343) Slc17a4 (MGP_CAROLIEiJ_G0018344) H2bc1 (MGP_CAROLIEiJ_G0018345) ##36 H2ac1 (MGP_CAROLIEiJ_G0018346) Scgn (MGP_CAROLIEiJ_G0018347) Carmil1 (MGP_CAROLIEiJ_G0018348) Cmah (MGP_CAROLIEiJ_G0018349) Ripor2 (MGP_CAROLIEiJ_G0018350) Ryukyu mouse MODERN SPECIES 4 Scgn (MGP_CAROLIEiJ_G0018347) H2ac1 (MGP_CAROLIEiJ_G0018346) H2bc1 (MGP_CAROLIEiJ_G0018345) ##36 Slc17a4 (MGP_CAROLIEiJ_G0018344) Slc17a1 (MGP_CAROLIEiJ_G0018343) Slc17a3 (MGP_CAROLIEiJ_G0018342) Slc17a2 (MGP_CAROLIEiJ_G0018341) Trim38 (MGP_CAROLIEiJ_G0018340) H1f1 (MGP_CAROLIEiJ_G0018339) MGP_CAROLIEiJ_G0018338 MGP_CAROLIEiJ_G0018337 MGP_CAROLIEiJ_G0018336 MGP_CAROLIEiJ_G0018335 #32 MGP_CAROLIEiJ_G0018334 H2bc3 (MGP_CAROLIEiJ_G0018333) #14 MGP_CAROLIEiJ_G0018332 #32 H1f2 (MGP_CAROLIEiJ_G0018331) Hfe (MGP_CAROLIEiJ_G0018330) MGP_CAROLIEiJ_G0018329 H1f6 (MGP_CAROLIEiJ_G0018328) MGP_CAROLIEiJ_G0018327 #14 H1f4 (MGP_CAROLIEiJ_G0018326) MGP_CAROLIEiJ_G0018325 #14 MGP_CAROLIEiJ_G0018324 MGP_CAROLIEiJ_G0018323 #14 MGP_CAROLIEiJ_G0018322 MGP_CAROLIEiJ_G0018321 MGP_CAROLIEiJ_G0018320 H1f3 (MGP_CAROLIEiJ_G0018319) MGP_CAROLIEiJ_G0018318 MGP_CAROLIEiJ_G0018317 Mus_B ANCESTRAL SPECIES 56 ENSGT00940000153092.a.a.c.a.b ENSGT01100000263559.B #32 ENSGT01060000248528.b.jh.a.a.b Mus_C ANCESTRAL SPECIES 10 ENSGT00940000155112.B ENSGT00950000183108.a ENSGT00940000161385 ENSGT01100000263474.a.a.c.b ##36 ENSGT00940000160894 ENSGT00940000162346 ENSGT00940000162523 ENSGT00940000161926 ENSGT00940000160468 ENSGT00940000163269 ENSGT01100000263514.A.e.a.b.a.a.c.b ENSGT01100000263514.A.f ENSGT01060000248528.b.kh.yb.b ENSGT00940000156302 ENSGT00940000153092.a.a.d.e.a ENSGT01100000263559.B #32 ENSGT01100000263514.A.e.a.b.a.b.a.a.a.b.a.a.a.a ENSGT01100000263474.a.b.b.e.a.a.a.a ##36 ENSGT00940000153092.a.a.c.a.a.f.b ENSGT01100000263559.A.f.e #25 ENSGT00940000163082 ENSGT01100000263517.b.d.m.a.a.b ENSGT00940000163525 ENSGT01100000263506.a.e.a.a.a.b.a.a.b.a.b.a.a.b #14 ENSGT01100000263506.a.e.a.a.a.b.b.a.a.a #14 ENSGT01100000263506.a.f.b.p.b #14 ENSGT00940000153092.a.a.c.a.a.g ENSGT01100000263514.A.e.a.b.a.b.a.a.a.a ENSGT00940000155501.a.a ENSGT00940000155501.a.b ENSGT00940000158017 spretus MODERN SPECIES 4 MGP_SPRETEiJ_G0019205 MGP_SPRETEiJ_G0019204 MGP_SPRETEiJ_G0019203 MGP_SPRETEiJ_G0019202 MGP_SPRETEiJ_G0019201 #14 MGP_SPRETEiJ_G0019200 #25 H1f2 (MGP_SPRETEiJ_G0019199) Hfe (MGP_SPRETEiJ_G0019198) MGP_SPRETEiJ_G0019197 ##28 H1f6 (MGP_SPRETEiJ_G0019196) MGP_SPRETEiJ_G0019194 MGP_SPRETEiJ_G0019193 #25 MGP_SPRETEiJ_G0019192 MGP_SPRETEiJ_G0019191 ##36 MGP_SPRETEiJ_G0019190 ##36 MGP_SPRETEiJ_G0019189 #32 MGP_SPRETEiJ_G0019188 #25 MGP_SPRETEiJ_G0019187 MGP_SPRETEiJ_G0019186 ##36 MGP_SPRETEiJ_G0019185 MGP_SPRETEiJ_G0019184 ##28 Btn2a2 (MGP_SPRETEiJ_G0019183) Btn1a1 (MGP_SPRETEiJ_G0019182) Abt1 (MGP_SPRETEiJ_G0019181) Zfp322a (MGP_SPRETEiJ_G0019180) MGP_SPRETEiJ_G0019179 Vmn1r217 (MGP_SPRETEiJ_G0019178) MGP_SPRETEiJ_G0019177 Vmn1r215 (MGP_SPRETEiJ_G0019176) Vmn1r214 (MGP_SPRETEiJ_G0019175) MGP_SPRETEiJ_G0019174 Steppe mouse MODERN SPECIES 2974 Vmn1r215 (ENSMSIG00000001920) Vmn1r216 (ENSMSIG00000001928) Vmn1r217 (ENSMSIG00000001939) Vmn1r218 (ENSMSIG00000001945) Vmn1r219 (ENSMSIG00000001961) ENSMSIG00000001982 Vmn1r189 (ENSMSIG00000002000) Vmn1r222 (ENSMSIG00000002019) Vmn1r223 (ENSMSIG00000002029) Zfp322a (ENSMSIG00000002077) Abt1 (ENSMSIG00000002096) Btn1a1 (ENSMSIG00000002124) Btn2a2 (ENSMSIG00000002214) ENSMSIG00000002451 H2ac10 (ENSMSIG00000002460) ENSMSIG00000002473 #32 ENSMSIG00000002485 #14 H1f3 (ENSMSIG00000002502) H1f4 (ENSMSIG00000002510) ENSMSIG00000002543 ENSMSIG00000002557 #14 H1f6 (ENSMSIG00000002560) ENSMSIG00000002567 Hfe (ENSMSIG00000002587) Mouse DUPLICATION Mouse DUPLICATION Mouse MODERN SPECIES 4 H3c3 (ENSMUSG00000069310) #25 H1f2 (ENSMUSG00000036181) Hfe (ENSMUSG00000006611) H4c3 (ENSMUSG00000060678) H1f6 (ENSMUSG00000036211) H2bc4 (ENSMUSG00000018102) #14 H2ac6 (ENSMUSG00000069270) H1f4 (ENSMUSG00000051627) H2bc6 (ENSMUSG00000047246) #14 H4c4 (ENSMUSG00000061482) H3c4 (ENSMUSG00000099583) #32 H2ac7 (ENSMUSG00000071478) H2bc7 (ENSMUSG00000069268) #14 H2bc8 (ENSMUSG00000058385) #14 H2ac8 (ENSMUSG00000069272) H3c6 (ENSMUSG00000069273) #32 H1f3 (ENSMUSG00000052565) H4c6 (ENSMUSG00000069274) H3c7 (ENSMUSG00000100210) #32 H2bc9 (ENSMUSG00000114456) #14 H3c8 (ENSMUSG00000099517) H2ac10 (ENSMUSG00000061991) H4c8 (ENSMUSG00000060981) Btn2a2 (ENSMUSG00000053216) Btn1a1 (ENSMUSG00000000706) Abt1 (ENSMUSG00000036376) Zfp322a (ENSMUSG00000046351) Vmn1r223 (ENSMUSG00000069280) Vmn1r222 (ENSMUSG00000061022) Vmn1r221 (ENSMUSG00000082316) Vmn1r220 (ENSMUSG00000096099) Mouse MODERN SPECIES 4 H2bc7 (ENSMUSG00000069268) #14 H2ac7 (ENSMUSG00000071478) H3c4 (ENSMUSG00000099583) #32 H4c4 (ENSMUSG00000061482) H2bc6 (ENSMUSG00000047246) #14 H1f4 (ENSMUSG00000051627) H2ac6 (ENSMUSG00000069270) H2bc4 (ENSMUSG00000018102) #14 H1f6 (ENSMUSG00000036211) H4c3 (ENSMUSG00000060678) Hfe (ENSMUSG00000006611) H1f2 (ENSMUSG00000036181) H3c3 (ENSMUSG00000069310) #25 H2bc3 (ENSMUSG00000075031) #14 H2ac4 (ENSMUSG00000061615) H3c2 (ENSMUSG00000069267) #32 H4c2 (ENSMUSG00000069266) H4c1 (ENSMUSG00000060093) H3c1 (ENSMUSG00000069265) H1f1 (ENSMUSG00000049539) Trim38 (ENSMUSG00000064140) Slc17a2 (ENSMUSG00000036110) Slc17a3 (ENSMUSG00000036083) Slc17a1 (ENSMUSG00000021335) Slc17a4 (ENSMUSG00000021336) H2bc1 (ENSMUSG00000050799) ##36 H2ac1 (ENSMUSG00000060081) Scgn (ENSMUSG00000021337) Carmil1 (ENSMUSG00000021338) Cmah (ENSMUSG00000016756) Ripor2 (ENSMUSG00000036006) Mouse MODERN SPECIES 4 Vmn1r217 (ENSMUSG00000115791) Vmn1r218 (ENSMUSG00000115020) Vmn1r219 (ENSMUSG00000061376) Vmn1r220 (ENSMUSG00000096099) Vmn1r221 (ENSMUSG00000082316) Vmn1r222 (ENSMUSG00000061022) Vmn1r223 (ENSMUSG00000069280) Zfp322a (ENSMUSG00000046351) Abt1 (ENSMUSG00000036376) Btn1a1 (ENSMUSG00000000706) Btn2a2 (ENSMUSG00000053216) H4c8 (ENSMUSG00000060981) H2ac10 (ENSMUSG00000061991) H3c8 (ENSMUSG00000099517) H2bc9 (ENSMUSG00000114456) #14 H3c7 (ENSMUSG00000100210) #32 H4c6 (ENSMUSG00000069274) H1f3 (ENSMUSG00000052565) H3c6 (ENSMUSG00000069273) #32 H2ac8 (ENSMUSG00000069272) H2bc8 (ENSMUSG00000058385) #14 H2bc7 (ENSMUSG00000069268) #14 H2ac7 (ENSMUSG00000071478) H3c4 (ENSMUSG00000099583) #32 H4c4 (ENSMUSG00000061482) H2bc6 (ENSMUSG00000047246) #14 H1f4 (ENSMUSG00000051627) H2ac6 (ENSMUSG00000069270) H2bc4 (ENSMUSG00000018102) #14 H1f6 (ENSMUSG00000036211) H4c3 (ENSMUSG00000060678) Mouse MODERN SPECIES 4 Abt1 (ENSMUSG00000036376) Btn1a1 (ENSMUSG00000000706) Btn2a2 (ENSMUSG00000053216) H4c8 (ENSMUSG00000060981) H2ac10 (ENSMUSG00000061991) H3c8 (ENSMUSG00000099517) H2bc9 (ENSMUSG00000114456) #14 H3c7 (ENSMUSG00000100210) #32 H4c6 (ENSMUSG00000069274) H1f3 (ENSMUSG00000052565) H3c6 (ENSMUSG00000069273) #32 H2ac8 (ENSMUSG00000069272) H2bc8 (ENSMUSG00000058385) #14 H2bc7 (ENSMUSG00000069268) #14 H2ac7 (ENSMUSG00000071478) H3c4 (ENSMUSG00000099583) #32 H4c4 (ENSMUSG00000061482) H2bc6 (ENSMUSG00000047246) #14 H1f4 (ENSMUSG00000051627) H2ac6 (ENSMUSG00000069270) H2bc4 (ENSMUSG00000018102) #14 H1f6 (ENSMUSG00000036211) H4c3 (ENSMUSG00000060678) Hfe (ENSMUSG00000006611) H1f2 (ENSMUSG00000036181) H3c3 (ENSMUSG00000069310) #25 H2bc3 (ENSMUSG00000075031) #14 H2ac4 (ENSMUSG00000061615) H3c2 (ENSMUSG00000069267) #32 H4c2 (ENSMUSG00000069266) H4c1 (ENSMUSG00000060093) Shrew mouse DUPLICATION Shrew mouse MODERN SPECIES 7 MGP_PahariEiJ_G0019383 #32 MGP_PahariEiJ_G0019384 #25 MGP_PahariEiJ_G0019385 MGP_PahariEiJ_G0019386 MGP_PahariEiJ_G0019387 MGP_PahariEiJ_G0019388 #14 H1f4 (MGP_PahariEiJ_G0019389) MGP_PahariEiJ_G0019390 #14 H1f6 (MGP_PahariEiJ_G0019391) MGP_PahariEiJ_G0019392 Hfe (MGP_PahariEiJ_G0019393) H1f2 (MGP_PahariEiJ_G0019394) MGP_PahariEiJ_G0019395 #25 H2bc3 (MGP_PahariEiJ_G0019396) #14 MGP_PahariEiJ_G0019397 MGP_PahariEiJ_G0019398 #32 MGP_PahariEiJ_G0019399 MGP_PahariEiJ_G0019400 MGP_PahariEiJ_G0019401 H1f1 (MGP_PahariEiJ_G0019402) Trim38 (MGP_PahariEiJ_G0019403) Slc17a2 (MGP_PahariEiJ_G0019404) Slc17a3 (MGP_PahariEiJ_G0019405) Slc17a1 (MGP_PahariEiJ_G0019406) Slc17a4 (MGP_PahariEiJ_G0019407) H2bc1 (MGP_PahariEiJ_G0019408) ##36 H2ac1 (MGP_PahariEiJ_G0019409) Scgn (MGP_PahariEiJ_G0019410) Carmil1 (MGP_PahariEiJ_G0019411) Cmah (MGP_PahariEiJ_G0019412) Ripor2 (MGP_PahariEiJ_G0019413) Shrew mouse MODERN SPECIES 7 MGP_PahariEiJ_G0019398 #32 MGP_PahariEiJ_G0019397 H2bc3 (MGP_PahariEiJ_G0019396) #14 MGP_PahariEiJ_G0019395 #25 H1f2 (MGP_PahariEiJ_G0019394) Hfe (MGP_PahariEiJ_G0019393) MGP_PahariEiJ_G0019392 H1f6 (MGP_PahariEiJ_G0019391) MGP_PahariEiJ_G0019390 #14 H1f4 (MGP_PahariEiJ_G0019389) MGP_PahariEiJ_G0019388 #14 MGP_PahariEiJ_G0019387 MGP_PahariEiJ_G0019386 MGP_PahariEiJ_G0019385 MGP_PahariEiJ_G0019384 #25 MGP_PahariEiJ_G0019383 #32 H1f3 (MGP_PahariEiJ_G0019382) MGP_PahariEiJ_G0019381 MGP_PahariEiJ_G0019380 MGP_PahariEiJ_G0019379 Btn2a2 (MGP_PahariEiJ_G0019378) Btn1a1 (MGP_PahariEiJ_G0019377) Abt1 (MGP_PahariEiJ_G0019376) Zfp322a (MGP_PahariEiJ_G0019375) Vmn1r223 (MGP_PahariEiJ_G0019374) MGP_PahariEiJ_G0019373 MGP_PahariEiJ_G0019372 MGP_PahariEiJ_G0019371 MGP_PahariEiJ_G0019370 MGP_PahariEiJ_G0019369 MGP_PahariEiJ_G0019368 Shrew mouse MODERN SPECIES 17 MGP_PahariEiJ_G0026804 Plekho1 (MGP_PahariEiJ_G0026805) Vps45 (MGP_PahariEiJ_G0026806) Otud7b (MGP_PahariEiJ_G0026807) Mtmr11 (MGP_PahariEiJ_G0026808) Sf3b4 (MGP_PahariEiJ_G0026809) Sv2a (MGP_PahariEiJ_G0026810) Bola1 (MGP_PahariEiJ_G0026811) H2ac21 (MGP_PahariEiJ_G0026812) H2ac20 (MGP_PahariEiJ_G0026813) MGP_PahariEiJ_G0026815 MGP_PahariEiJ_G0026814 H2bc21 (MGP_PahariEiJ_G0026816) #14 MGP_PahariEiJ_G0026817 MGP_PahariEiJ_G0026818 #25 MGP_PahariEiJ_G0026819 #32 H2bc18 (MGP_PahariEiJ_G0026820) #14 Fcgr1 (MGP_PahariEiJ_G0026821) Hjv (MGP_PahariEiJ_G0026822) Txnip (MGP_PahariEiJ_G0026823) MGP_PahariEiJ_G0026824 Polr3gl (MGP_PahariEiJ_G0026825) Ankrd34a (MGP_PahariEiJ_G0026826) Lix1l (MGP_PahariEiJ_G0026827) MGP_PahariEiJ_G0026828 Pex11b (MGP_PahariEiJ_G0026829) MGP_PahariEiJ_G0026830 Itga10 (MGP_PahariEiJ_G0026831) Ankrd35 (MGP_PahariEiJ_G0026832) Pias3 (MGP_PahariEiJ_G0026833) Nudt17 (MGP_PahariEiJ_G0026834) Cricetidae ANCESTRAL SPECIES 22 ENSGT00940000153717.a.a ENSGT00390000010830 ENSGT00940000155112.B ENSGT00950000183108.a ENSGT00940000161385 ENSGT01100000263474.a.a.c.b ##36 ENSGT00940000160894 ENSGT00940000162346 ENSGT00940000162523 ENSGT00940000161926 ENSGT00940000160468 ENSGT00940000163269 ENSGT01100000263514.A.e.a.b.a.b.a.a.a.b.a.b ENSGT00940000153092.a.a.c.a.a.f.b ENSGT01100000263474.a.b.b.e.a.a.a.a ##36 ENSGT01100000263559.B #32 ENSGT00940000163082 ENSGT01100000263517.b.d.m.a.a.b ENSGT01060000248528.b.kh.yb.b ENSGT00940000163525 ENSGT01100000263506.a.e.a.a.a.b.a.a.b.a.b.b.b #14 ENSGT01060000248528.b.jh.b ENSGT01100000263474.a.b.b.e.a.a.a.b ##36 ENSGT00940000153092.a.a.c.a.a.g ENSGT01100000263506.a.e.a.a.a.a.b.a.d #14 ENSGT01060000248528.b.jh.a.a.b ENSGT01100000263506.a.e.a.a.a.b.a.a.b.a.b.a.a.a.p #14 ENSGT00940000153092.a.b.f.c.a ENSGT00940000155501.a.a ENSGT01100000263506.a.e.a.a.a.b.a.a.b.a.b.a.a.a.o.b #14 ENSGT01100000263514.A.e.a.a.b Cricetinae ANCESTRAL SPECIES 20 ENSGT00940000153717.a.a ENSGT00390000010830 ENSGT00940000155112.B ENSGT00950000183108.a ENSGT00940000161385 ENSGT01100000263474.a.a.c.b ##36 ENSGT00940000160894 ENSGT00940000162346 ENSGT00940000162523 ENSGT00940000161926 ENSGT00940000160468 ENSGT00940000163269 ENSGT01100000263514.A.e.a.b.a.b.a.a.a.a ENSGT01060000248528.b.jh.b ENSGT01100000263474.a.b.b.e.a.a.a.a ##36 ENSGT01100000263559.B #32 ENSGT00940000163082 ENSGT01100000263517.b.d.m.a.a.b ENSGT01060000248528.b.kh.yb.b ENSGT00940000163525 ENSGT01100000263506.a.e.a.a.a.b.a.a.b.a.b.b.a #14 ENSGT00940000155501.a.a ENSGT01100000263506.a.e.a.a.a.b.a.a.b.a.b.a.a.a.o.b #14 ENSGT01100000263506.a.e.a.a.a.b.a.a.b.a.b.b.b #14 ENSGT00940000158017 ENSGT00940000161530 ENSGT00390000002062 ENSGT00940000162956 ENSGT01030000234553.b.b.c.b.a.a.b.b.b ENSGT01030000234553.b.b.c.b.b.c.a.a.b ENSGT01030000234553.b.b.c.b.b.c.b Chinese hamster chok1gshd DUPLICATION Chinese hamster chok1gshd MODERN SPECIES 317 ENSCGRG00001008076 ENSCGRG00001009204 ENSCGRG00001010597 ENSCGRG00001013659 #14 ENSCGRG00001018578 #14 H1f4 (ENSCGRG00001009883) ENSCGRG00001008121 ENSCGRG00001010735 #14 H1f6 (ENSCGRG00001008610) ENSCGRG00001010840 Hfe (ENSCGRG00001022484) H1f2 (ENSCGRG00001009982) ENSCGRG00001012092 #32 ENSCGRG00001012930 ##36 ENSCGRG00001010154 ENSCGRG00001011199 #32 ENSCGRG00001022542 ENSCGRG00001001443 ENSCGRG00001011455 H1f1 (ENSCGRG00001010065) Trim38 (ENSCGRG00001003323) Slc17a2 (ENSCGRG00001011821) Slc17a3 (ENSCGRG00001002510) Slc17a1 (ENSCGRG00001016831) Slc17a4 (ENSCGRG00001016183) H2bc1 (ENSCGRG00001007520) ##36 H2ac1 (ENSCGRG00001009534) Scgn (ENSCGRG00001001150) Carmil1 (ENSCGRG00001019506) ENSCGRG00001013190 Cmah (ENSCGRG00001015567) Chinese hamster chok1gshd MODERN SPECIES 317 Scgn (ENSCGRG00001001150) H2ac1 (ENSCGRG00001009534) H2bc1 (ENSCGRG00001007520) ##36 Slc17a4 (ENSCGRG00001016183) Slc17a1 (ENSCGRG00001016831) Slc17a3 (ENSCGRG00001002510) Slc17a2 (ENSCGRG00001011821) Trim38 (ENSCGRG00001003323) H1f1 (ENSCGRG00001010065) ENSCGRG00001011455 ENSCGRG00001001443 ENSCGRG00001022542 ENSCGRG00001011199 #32 ENSCGRG00001010154 ENSCGRG00001012930 ##36 ENSCGRG00001012092 #32 H1f2 (ENSCGRG00001009982) Hfe (ENSCGRG00001022484) ENSCGRG00001010840 H1f6 (ENSCGRG00001008610) ENSCGRG00001010735 #14 ENSCGRG00001008121 H1f4 (ENSCGRG00001009883) ENSCGRG00001018578 #14 ENSCGRG00001013659 #14 ENSCGRG00001010597 ENSCGRG00001009204 ENSCGRG00001008076 ENSCGRG00001002972 #14 ENSCGRG00001003737 ENSCGRG00001008834 #25 Chinese hamster chok1gshd MODERN SPECIES 66 ENSCGRG00001022251 ENSCGRG00001017709 Plekho1 (ENSCGRG00001011990) Vps45 (ENSCGRG00001024791) Otud7b (ENSCGRG00001023406) Mtmr11 (ENSCGRG00001016961) Sf3b4 (ENSCGRG00001003590) Sv2a (ENSCGRG00001020508) Bola1 (ENSCGRG00001011268) H2ac21 (ENSCGRG00001011919) ENSCGRG00001009965 ENSCGRG00001011428 #14 ENSCGRG00001010190 #25 ENSCGRG00001010788 ENSCGRG00001009035 ENSCGRG00001009755 #32 ENSCGRG00001009153 ENSCGRG00001009937 #25 H2bc18 (ENSCGRG00001006172) #14 ENSCGRG00001019293 Hjv (ENSCGRG00001009674) Txnip (ENSCGRG00001010170) Polr3gl (ENSCGRG00001023956) Ankrd34a (ENSCGRG00001006698) Lix1l (ENSCGRG00001012733) ENSCGRG00001002681 Pex11b (ENSCGRG00001007975) Itga10 (ENSCGRG00001010836) Ankrd35 (ENSCGRG00001015237) Pias3 (ENSCGRG00001023567) Nudt17 (ENSCGRG00001018476) Cricetidae_B ANCESTRAL SPECIES 3 ENSGT00390000002799 ENSGT00390000013847 ENSGT01030000234539.a.a.b.a.a ENSGT00530000063074.a ENSGT00940000158423 ENSGT00390000014273.b ENSGT00730000111185 ENSGT00390000005869.a ENSGT00390000012355.B.b ENSGT00940000165934 ENSGT00940000158522 ENSGT00950000183112.b.b ENSGT01050000244808.A.b.b.a ENSGT01100000263506.a.e.b #14 ENSGT00940000156302 ENSGT01100000263559.B #32 ENSGT01100000263506.a.e.a.a.a.b.b.b #14 ENSGT00940000153118.db.a.a.b.a.a ENSGT00940000153118.db.a.a.b.a.b ENSGT00510000048165 ENSGT00950000182940.b.a.b ENSGT00870000136537 ENSGT00940000160276 ENSGT00940000159172 ENSGT00550000075028 ENSGT00530000063760.b ENSGT00950000182907.a.a.u ENSGT00940000156893 ENSGT00390000002049.c.a ENSGT00390000003103 ENSGT00390000018360 Prairie vole MODERN SPECIES 8 BC028528 (ENSMOCG00000003466) Aph1a (ENSMOCG00000022720) Car14 (ENSMOCG00000014152) Anp32e (ENSMOCG00000002258) Plekho1 (ENSMOCG00000016679) Vps45 (ENSMOCG00000014888) Otud7b (ENSMOCG00000005067) Mtmr11 (ENSMOCG00000017943) ENSMOCG00000013658 Sv2a (ENSMOCG00000000375) Bola1 (ENSMOCG00000016236) H2ac21 (ENSMOCG00000008450) ENSMOCG00000007571 ENSMOCG00000002051 #14 ENSMOCG00000008702 ENSMOCG00000008172 #32 ENSMOCG00000014664 #25 H2bc18 (ENSMOCG00000007133) #14 Fcgr1 (ENSMOCG00000016687) ENSMOCG00000000933 Kirrel (ENSMOCG00000022496) Fcrls (ENSMOCG00000011149) ENSMOCG00000022843 ENSMOCG00000007905 Cd5l (ENSMOCG00000014684) ENSMOCG00000018610 Fcrl5 (ENSMOCG00000016593) ENSMOCG00000020841 Etv3 (ENSMOCG00000016504) ENSMOCG00000011380 ENSMOCG00000007988 Northern American deer mouse DUPLICATION Northern American deer mouse MODERN SPECIES 18 ENSPEMG00000027552 ENSPEMG00000027714 ##36 ENSPEMG00000029874 #25 H1f2 (ENSPEMG00000008138) Hfe (ENSPEMG00000010389) ENSPEMG00000025646 H1f6 (ENSPEMG00000009339) ENSPEMG00000031080 #14 ENSPEMG00000030798 H1f4 (ENSPEMG00000030581) ENSPEMG00000028094 ##36 ENSPEMG00000028544 ENSPEMG00000031078 ENSPEMG00000029970 #14 ENSPEMG00000028679 ENSPEMG00000027534 #32 H1f3 (ENSPEMG00000005204) ENSPEMG00000028580 ENSPEMG00000027012 ENSPEMG00000028518 ENSPEMG00000030707 Btn2a2 (ENSPEMG00000008235) ENSPEMG00000027518 Btn1a1 (ENSPEMG00000018352) Abt1 (ENSPEMG00000000185) Zfp322a (ENSPEMG00000017154) ENSPEMG00000029419 ENSPEMG00000031388 ENSPEMG00000031350 Prl3c1 (ENSPEMG00000006701) Prl3b1 (ENSPEMG00000021040) Northern American deer mouse MODERN SPECIES 19 Ankrd35 (ENSPEMG00000005629) Itga10 (ENSPEMG00000009215) Pex11b (ENSPEMG00000030984) ENSPEMG00000018117 Lix1l (ENSPEMG00000009747) Ankrd34a (ENSPEMG00000018493) Polr3gl (ENSPEMG00000014489) Txnip (ENSPEMG00000010784) Hjv (ENSPEMG00000016694) ENSPEMG00000029146 Fcgr1 (ENSPEMG00000010092) H2bc18 (ENSPEMG00000026346) #14 ENSPEMG00000030275 #25 ENSPEMG00000030515 ENSPEMG00000024811 ENSPEMG00000026231 #32 H2bc21 (ENSPEMG00000026085) #14 H2ac20 (ENSPEMG00000008763) H2ac21 (ENSPEMG00000025720) Bola1 (ENSPEMG00000008051) Sv2a (ENSPEMG00000008887) Sf3b4 (ENSPEMG00000017568) Mtmr11 (ENSPEMG00000014402) Otud7b (ENSPEMG00000027312) ENSPEMG00000030134 Vps45 (ENSPEMG00000018774) Plekho1 (ENSPEMG00000015477) Anp32e (ENSPEMG00000000742) Car14 (ENSPEMG00000011085) Aph1a (ENSPEMG00000015896) BC028528 (ENSPEMG00000009975) Rodentia_A ANCESTRAL SPECIES ENSGT00940000156893 ENSGT00950000182907.a.a ENSGT00530000063760.b ENSGT00550000075028 ENSGT00940000159172 ENSGT00940000160276 ENSGT00870000136537 ENSGT00950000182940.b.a.b ENSGT00510000048165 ENSGT00940000153118.db.a.a.b.a.b ENSGT00940000153118.db.a.a.b.a.a ENSGT01100000263575.B.u ENSGT00940000156302 ENSGT01100000263575.A ENSGT00940000153092.a.a.c.a.a ENSGT01100000263559.B #32 ENSGT00940000163082 ENSGT00940000160426 ENSGT01100000263559.A.f.e #25 ENSGT01100000263506.a.e.b #14 ENSGT01050000244808.A.b.b.a ENSGT00950000183112.b.b ENSGT00940000158522 ENSGT01060000248645 ENSGT00390000012355.B.b ENSGT00390000005869.a ENSGT00730000111185 ENSGT01050000244841.A.a.b ENSGT00390000014273.b ENSGT00940000158423 ENSGT00530000063074.a Hystricomorpha ANCESTRAL SPECIES 42 ENSGT00940000153717.a.a ENSGT00390000010830 ENSGT00940000155112.B ENSGT00950000183108.a ENSGT00940000161385 ENSGT01100000263474.a.a.c.a ##36 ENSGT00940000160894 ENSGT00940000162346 ENSGT00940000162523 ENSGT00940000161926 ENSGT00940000160468.e.a.b ENSGT00940000160468.e.b ENSGT00940000163269 ENSGT01100000263514.A.e.a.b.a.b.a.a.a.b.a.a.a.b ENSGT01100000263559.A.f.d.b #25 ENSGT01100000263559.B #32 ENSGT00940000163082 ENSGT01100000263517.b.d.m.a.a.b ENSGT01100000263506.a.e.a.a.a.b.a.a.b.a.b.b #14 ENSGT00940000153125.F.g ENSGT00940000155501.a.a ENSGT00940000158017 ENSGT00940000161530 ENSGT00950000182802.B.a.a.b ENSGT00390000002062 ENSGT00940000162956 ENSGT01090000260018.D.d.b ENSGT01050000244828.c.b.b.a.a.b Hystricomorpha_a ANCESTRAL SPECIES 48 ENSGT00940000153717.a.a ENSGT00390000010830 ENSGT00940000155112.B ENSGT00950000183108.a ENSGT00940000161385 ENSGT01100000263474.a.a.c.a ##36 ENSGT00940000160894 ENSGT00940000162346 ENSGT00940000162523 ENSGT00940000161926 ENSGT00940000160468.e.a.b ENSGT00940000160468.e.b ENSGT00940000163269 ENSGT01100000263514.A.e.a.b.a.b.a.a.a.b.a.a.a.a ENSGT01100000263559.A.f.d.b #25 ENSGT01100000263559.B #32 ENSGT00940000163082 ENSGT01100000263517.b.d.m.a.a.b ENSGT00940000163525 ENSGT01100000263506.a.e.a.a.a.b.a.a.b.a.a #14 ENSGT00940000158017 ENSGT00940000161530 ENSGT00390000002062 ENSGT00940000162956 ENSGT01090000260018.D.d.b ENSGT01050000244828.c.b.b.a.a.b Hystricomorpha_b ANCESTRAL SPECIES 58 ENSGT00940000160894 ENSGT00940000162346 ENSGT00940000162523 ENSGT00940000161926 ENSGT00940000160468.e.a.b ENSGT00940000160468.e.b ENSGT00940000163269 ENSGT01100000263514.A.e.a.b.a.b.a.a.a.b.a.a.a.a ENSGT00940000153118.db.a.a.a ENSGT01060000248528.b.kh.yb.b ENSGT01100000263506.a.e.a.a.a.b.a.a.b.a.b.a.a.a #14 ENSGT00940000162950 ENSGT01100000263514.A.e.a.b.a.b.a.a.a.a ENSGT01100000263506.a.e.a.a.a.b.a.a.a.s #14 ENSGT01100000263559.A.f.d.b #25 ENSGT01100000263559.B #32 ENSGT00940000163082 ENSGT01100000263517.b.d.m.a.a.b Long-tailed chinchilla DUPLICATION Long-tailed chinchilla MODERN SPECIES 190 ENSCLAG00000017561 ENSCLAG00000017508 ENSCLAG00000002673 #25 ENSCLAG00000017485 H2BC3 (ENSCLAG00000002412) ENSCLAG00000017519 ENSCLAG00000017481 #32 H1-2 (ENSCLAG00000017517) HFE (ENSCLAG00000002257) ENSCLAG00000017464 H2BC4 (ENSCLAG00000001916) #14 ENSCLAG00000001902 ENSCLAG00000017500 #14 ENSCLAG00000017446 ENSCLAG00000017451 #36 ENSCLAG00000017593 #32 ENSCLAG00000017552 H1-3 (ENSCLAG00000017591) ENSCLAG00000017582 ENSCLAG00000003650 ENSCLAG00000017549 #14 ENSCLAG00000017522 ENSCLAG00000017576 ENSCLAG00000017484 #14 ENSCLAG00000017472 ENSCLAG00000002266 ENSCLAG00000002105 ENSCLAG00000002060 ENSCLAG00000002034 ABT1 (ENSCLAG00000002238) ENSCLAG00000001984 Long-tailed chinchilla MODERN SPECIES 172 ENSCLAG00000007653 SERPINB1 (ENSCLAG00000008637) WRNIP1 (ENSCLAG00000006960) MYLK4 (ENSCLAG00000007226) GMDS (ENSCLAG00000002602) FOXF2 (ENSCLAG00000002746) EXOC2 (ENSCLAG00000003072) IRF4 (ENSCLAG00000004136) DUSP22 (ENSCLAG00000004363) ENSCLAG00000002521 ENSCLAG00000002610 ENSCLAG00000002803 ENSCLAG00000001962 ##36 PRSS16 (ENSCLAG00000002074) ENSCLAG00000002094 ENSCLAG00000017554 #32 ENSCLAG00000017470 H1-5 (ENSCLAG00000017511) ENSCLAG00000017473 #14 ENSCLAG00000017507 OR2B6 (ENSCLAG00000002828) ENSCLAG00000002900 ENSCLAG00000002954 ZKSCAN8 (ENSCLAG00000006077) ZSCAN9 (ENSCLAG00000006959) ZSCAN26 (ENSCLAG00000007145) ENSCLAG00000007320 ENSCLAG00000007627 ENSCLAG00000007907 GPX6 (ENSCLAG00000008015) ENSCLAG00000008444 Long-tailed chinchilla MODERN SPECIES 190 SLC17A4 (ENSCLAG00000002246) SLC17A1 (ENSCLAG00000002155) SLC17A3 (ENSCLAG00000002031) SLC17A2 (ENSCLAG00000001995) ENSCLAG00000001954 ENSCLAG00000001925 ENSCLAG00000003371 H1-1 (ENSCLAG00000017524) ENSCLAG00000002704 ENSCLAG00000017561 ENSCLAG00000017508 ENSCLAG00000002673 #25 ENSCLAG00000017485 H2BC3 (ENSCLAG00000002412) ENSCLAG00000017519 ENSCLAG00000017481 #32 H1-2 (ENSCLAG00000017517) HFE (ENSCLAG00000002257) ENSCLAG00000017464 H2BC4 (ENSCLAG00000001916) #14 ENSCLAG00000001902 ENSCLAG00000017500 #14 ENSCLAG00000017446 ENSCLAG00000017451 #36 ENSCLAG00000017593 #32 ENSCLAG00000017552 H1-3 (ENSCLAG00000017591) ENSCLAG00000017582 ENSCLAG00000003650 ENSCLAG00000017549 #14 ENSCLAG00000017522 Degu DUPLICATION Degu MODERN SPECIES 64 ENSODEG00000007557 FOXC1 (ENSODEG00000006912) FOXF2 (ENSODEG00000007607) EXOC2 (ENSODEG00000006797) ENSODEG00000019672 IRF4 (ENSODEG00000007674) DUSP22 (ENSODEG00000006703) ENSODEG00000007570 ENSODEG00000006390 ENSODEG00000006799 ENSODEG00000019618 ##36 ENSODEG00000019561 #14 ENSODEG00000019617 PRSS16 (ENSODEG00000007095) ZNF184 (ENSODEG00000008565) ENSODEG00000019426 #32 ENSODEG00000019469 ENSODEG00000019585 #14 ENSODEG00000019548 ENSODEG00000019596 #14 ENSODEG00000007819 ENSODEG00000019425 #32 ENSODEG00000019545 #36 ENSODEG00000019470 ENSODEG00000008174 ZKSCAN8 (ENSODEG00000006772) ENSODEG00000008300 ZSCAN26 (ENSODEG00000007414) ENSODEG00000008481 ENSODEG00000010310 ENSODEG00000009823 Degu MODERN SPECIES 160 ABT1 (ENSODEG00000014676) BTN1A1 (ENSODEG00000013656) BTN2A2 (ENSODEG00000013492) ENSODEG00000020041 ENSODEG00000014935 ENSODEG00000015343 ENSODEG00000013504 #25 ENSODEG00000013667 #32 ENSODEG00000013885 #25 ENSODEG00000013815 ENSODEG00000013335 ENSODEG00000015259 ENSODEG00000013294 ENSODEG00000013476 #14 HFE (ENSODEG00000015440) ENSODEG00000013990 #32 H1-1 (ENSODEG00000020218) ENSODEG00000020110 ENSODEG00000020246 SLC17A2 (ENSODEG00000013372) SLC17A3 (ENSODEG00000013677) SLC17A1 (ENSODEG00000014265) SLC17A4 (ENSODEG00000014939) ENSODEG00000020202 ##36 H2AC1 (ENSODEG00000020076) SCGN (ENSODEG00000013580) CARMIL1 (ENSODEG00000014381) ENSODEG00000020125 ENSODEG00000014566 RIPOR2 (ENSODEG00000013706) GMNN (ENSODEG00000015221) Degu MODERN SPECIES 160 OR14J1 (ENSODEG00000020074) ENSODEG00000013745 ENSODEG00000012723 ENSODEG00000012485 ABT1 (ENSODEG00000014676) BTN1A1 (ENSODEG00000013656) BTN2A2 (ENSODEG00000013492) ENSODEG00000020041 ENSODEG00000014935 ENSODEG00000015343 ENSODEG00000013504 #25 ENSODEG00000013667 #32 ENSODEG00000013885 #25 ENSODEG00000013815 ENSODEG00000013335 ENSODEG00000015259 ENSODEG00000013294 ENSODEG00000013476 #14 HFE (ENSODEG00000015440) ENSODEG00000013990 #32 H1-1 (ENSODEG00000020218) ENSODEG00000020110 ENSODEG00000020246 SLC17A2 (ENSODEG00000013372) SLC17A3 (ENSODEG00000013677) SLC17A1 (ENSODEG00000014265) SLC17A4 (ENSODEG00000014939) Degu MODERN SPECIES 64 TRIM27 (ENSODEG00000008147) ENSODEG00000008830 ENSODEG00000008110 GPX6 (ENSODEG00000008209) ENSODEG00000009823 ENSODEG00000010310 ENSODEG00000008481 ZSCAN26 (ENSODEG00000007414) ENSODEG00000008300 ZKSCAN8 (ENSODEG00000006772) ENSODEG00000008174 ENSODEG00000019470 ENSODEG00000019545 #36 ENSODEG00000019425 #32 ENSODEG00000007819 ENSODEG00000019596 #14 ENSODEG00000019548 ENSODEG00000019585 #14 ENSODEG00000019469 ENSODEG00000019426 #32 ZNF184 (ENSODEG00000008565) PRSS16 (ENSODEG00000007095) ENSODEG00000019617 ENSODEG00000019561 #14 ENSODEG00000019618 ##36 ENSODEG00000006799 ENSODEG00000006390 ENSODEG00000007570 DUSP22 (ENSODEG00000006703) Naked mole-rat female DUPLICATION Naked mole-rat female MODERN SPECIES 28 ENSHGLG00000006505 ENSHGLG00000048321 ENSHGLG00000043363 ##36 ENSHGLG00000039281 ##36 ENSHGLG00000040977 HIST1H4I (ENSHGLG00000051005) ENSHGLG00000038626 #14 H1-4 (ENSHGLG00000045582) ENSHGLG00000040023 ENSHGLG00000033074 #14 ENSHGLG00000006448 HIST1H1C (ENSHGLG00000049913) ENSHGLG00000042839 #32 ENSHGLG00000037809 ENSHGLG00000042136 ENSHGLG00000033295 #32 HIST1H4I (ENSHGLG00000049339) ENSHGLG00000045417 ENSHGLG00000020348 ENSHGLG00000032839 ENSHGLG00000037734 ENSHGLG00000048095 MBOAT1 (ENSHGLG00000005633) ENSHGLG00000043782 E2F3 (ENSHGLG00000004868) CDKAL1 (ENSHGLG00000004810) SOX4 (ENSHGLG00000046025) ENSHGLG00000041083 ENSHGLG00000039675 ENSHGLG00000046839 ENSHGLG00000004393 Naked mole-rat female MODERN SPECIES 28 ENSHGLG00000041083 SOX4 (ENSHGLG00000046025) CDKAL1 (ENSHGLG00000004810) E2F3 (ENSHGLG00000004868) ENSHGLG00000043782 MBOAT1 (ENSHGLG00000005633) ENSHGLG00000048095 ENSHGLG00000037734 ENSHGLG00000032839 ENSHGLG00000020348 ENSHGLG00000045417 HIST1H4I (ENSHGLG00000049339) ENSHGLG00000033295 #32 ENSHGLG00000042136 ENSHGLG00000037809 ENSHGLG00000042839 #32 HIST1H1C (ENSHGLG00000049913) ENSHGLG00000006448 ENSHGLG00000033074 #14 ENSHGLG00000040023 H1-4 (ENSHGLG00000045582) ENSHGLG00000038626 #14 HIST1H4I (ENSHGLG00000051005) ENSHGLG00000040977 ENSHGLG00000039281 ##36 ENSHGLG00000043363 ##36 ENSHGLG00000048321 ENSHGLG00000006505 ENSHGLG00000045351 HIST1H4I (ENSHGLG00000047844) ENSHGLG00000004694 #25 Sciuridae ANCESTRAL SPECIES 1 ENSGT01100000263575.A ENSGT01100000263575.B.t.a.b ENSGT00940000156302 ENSGT01100000263559.A.f.e #25 ENSGT00940000153118.db.b ENSGT01060000248528.b.jh.a.a.a ENSGT01100000263474.a.b.b.e.a.a.a.a ##36 ENSGT00940000155501.a.a ENSGT00940000153092.a.b.f ENSGT01100000263506.a.e.a.a.a.b.a.a.b.a.a #14 ENSGT01060000248528.b.kh.yb.b ENSGT00940000153118.db.a.a.a ENSGT01100000263795 ENSGT00940000155501.a.b ENSGT00940000153092.a.a.c.a.a ENSGT01100000263559.B #32 ENSGT01060000248528.b.jh.b ENSGT01100000263514.A.e.a.b.a.b.a.a.a.b.a.a.b ENSGT00990000203553.c.b #28 ENSGT01100000263514.A.e.a.a.b ENSGT01100000263514.A.e.a.b.a.b.a.b ENSGT00940000163269 ENSGT00940000160468 ENSGT00940000161926 ENSGT00940000160894 ENSGT01100000263474.a.a.c.b ##36 ENSGT00940000161385 ENSGT00950000183108.a ENSGT00940000155112.B ENSGT00390000010830 ENSGT00940000153717.a.a Eurasian red squirrel DUPLICATION Eurasian red squirrel MODERN SPECIES 16 ENSSVLG00005013576 CARMIL1 (ENSSVLG00005013714) SCGN (ENSSVLG00005013776) H2AC1 (ENSSVLG00005013853) H2BC1 (ENSSVLG00005013920) ##36 SLC17A4 (ENSSVLG00005014018) SLC17A2 (ENSSVLG00005014276) TRIM38 (ENSSVLG00005014574) H1-1 (ENSSVLG00005014688) ENSSVLG00005014701 ENSSVLG00005014727 ENSSVLG00005014742 ENSSVLG00005014761 #32 H2AC4 (ENSSVLG00005014779) H2BC3 (ENSSVLG00005014798) ENSSVLG00005014821 #32 H1-2 (ENSSVLG00005014836) ENSSVLG00005014863 ENSSVLG00005014988 ENSSVLG00005015008 #14 ENSSVLG00005015027 ##31 ENSSVLG00005015136 ENSSVLG00005015579 H1-6 (ENSSVLG00005015594) H2BC4 (ENSSVLG00005015614) #14 H2AC6 (ENSSVLG00005015625) H1-4 (ENSSVLG00005015645) ENSSVLG00005015665 ##36 ENSSVLG00005015689 ##36 ENSSVLG00005015745 ENSSVLG00005015768 #25 Eurasian red squirrel MODERN SPECIES 16 ENSSVLG00005015665 ##36 H1-4 (ENSSVLG00005015645) H2AC6 (ENSSVLG00005015625) H2BC4 (ENSSVLG00005015614) #14 H1-6 (ENSSVLG00005015594) ENSSVLG00005015579 ENSSVLG00005015136 ENSSVLG00005015027 ##31 ENSSVLG00005015008 #14 ENSSVLG00005014988 ENSSVLG00005014863 H1-2 (ENSSVLG00005014836) ENSSVLG00005014821 #32 H2BC3 (ENSSVLG00005014798) H2AC4 (ENSSVLG00005014779) ENSSVLG00005014761 #32 ENSSVLG00005014742 ENSSVLG00005014727 ENSSVLG00005014701 H1-1 (ENSSVLG00005014688) TRIM38 (ENSSVLG00005014574) SLC17A2 (ENSSVLG00005014276) SLC17A4 (ENSSVLG00005014018) H2BC1 (ENSSVLG00005013920) ##36 H2AC1 (ENSSVLG00005013853) SCGN (ENSSVLG00005013776) CARMIL1 (ENSSVLG00005013714) ENSSVLG00005013576 RIPOR2 (ENSSVLG00005012986) ARMH2 (ENSSVLG00005012864) GMNN (ENSSVLG00005012824) Marmotini ANCESTRAL SPECIES 40 ENSGT00530000068834 ENSGT00940000153717.a.a ENSGT00390000010830 ENSGT00940000155112.B ENSGT00950000183108.a ENSGT00940000161385 ENSGT01100000263474.a.a.c.b ##36 ENSGT01100000263506.a.f.b #14 ENSGT00940000160894 ENSGT00940000161926 ENSGT00940000160468 ENSGT00940000163269 ENSGT01100000263514.A.e.a.a.b ENSGT00990000203553.c.b #28 ENSGT01100000263575.A ENSGT01100000263559.B #32 ENSGT01060000248528.b.jh.b ENSGT01100000263514.A.e.a.b.a.b.a.a.a.b.a.a.b ENSGT00940000163082 ENSGT01100000263517.b.d.m.a.a.b ENSGT00940000163525 ENSGT01100000263506.a.e.a.a.a.b.a.a.b.a.a #14 ENSGT00940000153092.a.b.f ENSGT00940000155501.a.a ENSGT01100000263506.a.e.a.a.a.a.b.a #14 ENSGT01060000248528.b.jh.a.b ENSGT00940000162723 ENSGT00940000158017 ENSGT00940000161530 ENSGT00390000002062 ENSGT00940000162956 Marmotini_b ANCESTRAL SPECIES 109 ENSGT01100000263474.a.b.b.e.a.a.b ##36 ENSGT00940000164849 ENSGT00940000160281 ENSGT00940000153125.A ENSGT00940000162956 ENSGT00390000002062 ENSGT00940000161530 ENSGT00940000158017 ENSGT00940000162723 ENSGT01100000263506.a.e.a.a.a.b.b.a.b #14 ENSGT00940000163525 ENSGT01100000263517.b.d.m.a.a.b ENSGT00940000163082 ENSGT01100000263575.A ENSGT00940000153092.a.a.c.a.a ENSGT01100000263559.B #32 ENSGT01060000248528.b.jh.b ENSGT01100000263514.A.e.a.b.a.b.a.a.a.b.a.a.b ENSGT00990000203553.c.b #28 ENSGT01100000263514.A.e.a.a.b ENSGT01100000263514.A.e.a.b.a.b.a.a.b ENSGT00940000163269 ENSGT00940000160468 ENSGT00940000161926 ENSGT00940000160894 ENSGT01100000263506.a.f.b #14 ENSGT01100000263474.a.a.c.b ##36 ENSGT00940000161385 ENSGT00950000183108.a ENSGT00940000155112.B ENSGT00390000010830 Arctic ground squirrel DUPLICATION Arctic ground squirrel MODERN SPECIES 367 ENSUPAG00010005871 H1-3 (ENSUPAG00010005873) ENSUPAG00010005882 ENSUPAG00010005884 #32 ENSUPAG00010005886 H1-4 (ENSUPAG00010005887) H2AC6 (ENSUPAG00010005895) ENSUPAG00010005897 #14 H1-6 (ENSUPAG00010005899) ENSUPAG00010005901 HFE (ENSUPAG00010005903) H1-2 (ENSUPAG00010005911) ENSUPAG00010005912 #32 H2BC3 (ENSUPAG00010005915) ENSUPAG00010005917 ENSUPAG00010005920 #32 ENSUPAG00010005923 ENSUPAG00010005925 #28 ENSUPAG00010005927 H1-1 (ENSUPAG00010005929) TRIM38 (ENSUPAG00010005930) SLC17A2 (ENSUPAG00010005933) SLC17A4 (ENSUPAG00010005946) ENSUPAG00010005968 #14 H2BC1 (ENSUPAG00010005971) ##36 H2AC1 (ENSUPAG00010005977) ENSUPAG00010005978 CARMIL1 (ENSUPAG00010005987) ENSUPAG00010006140 RIPOR2 (ENSUPAG00010006182) ARMH2 (ENSUPAG00010006215) Arctic ground squirrel DUPLICATION Arctic ground squirrel MODERN SPECIES 367 CARMIL1 (ENSUPAG00010005987) ENSUPAG00010005978 H2AC1 (ENSUPAG00010005977) H2BC1 (ENSUPAG00010005971) ##36 ENSUPAG00010005968 #14 SLC17A4 (ENSUPAG00010005946) SLC17A2 (ENSUPAG00010005933) TRIM38 (ENSUPAG00010005930) H1-1 (ENSUPAG00010005929) ENSUPAG00010005927 ENSUPAG00010005925 #28 ENSUPAG00010005923 ENSUPAG00010005920 #32 ENSUPAG00010005917 H2BC3 (ENSUPAG00010005915) ENSUPAG00010005912 #32 H1-2 (ENSUPAG00010005911) HFE (ENSUPAG00010005903) ENSUPAG00010005901 H1-6 (ENSUPAG00010005899) ENSUPAG00010005897 #14 H2AC6 (ENSUPAG00010005895) H1-4 (ENSUPAG00010005887) ENSUPAG00010005886 ENSUPAG00010005884 #32 ENSUPAG00010005882 H1-3 (ENSUPAG00010005873) ENSUPAG00010005871 ENSUPAG00010005869 #14 ENSUPAG00010005866 ENSUPAG00010005865 Arctic ground squirrel MODERN SPECIES 367 ZNF322 (ENSUPAG00010005538) ABT1 (ENSUPAG00010005543) BTN1A1 (ENSUPAG00010005549) ENSUPAG00010005833 ENSUPAG00010005837 ENSUPAG00010005862 ENSUPAG00010005865 ENSUPAG00010005866 ENSUPAG00010005869 #14 ENSUPAG00010005871 H1-3 (ENSUPAG00010005873) ENSUPAG00010005882 ENSUPAG00010005884 #32 ENSUPAG00010005886 H1-4 (ENSUPAG00010005887) H2AC6 (ENSUPAG00010005895) ENSUPAG00010005897 #14 H1-6 (ENSUPAG00010005899) ENSUPAG00010005901 HFE (ENSUPAG00010005903) H1-2 (ENSUPAG00010005911) ENSUPAG00010005912 #32 H2BC3 (ENSUPAG00010005915) ENSUPAG00010005917 ENSUPAG00010005920 #32 ENSUPAG00010005923 ENSUPAG00010005925 #28 ENSUPAG00010005927 Arctic ground squirrel MODERN SPECIES 630 ENSUPAG00010012083 ENSUPAG00010012075 ENSUPAG00010012068 #14 ENSUPAG00010012062 ENSUPAG00010012055 #28 ENSUPAG00010012049 #14 ENSUPAG00010012024 ENSUPAG00010012019 ENSUPAG00010012005 ENSUPAG00010011996 ENSUPAG00010011989 ENSUPAG00010011977 ENSUPAG00010011971 ENSUPAG00010011966 ENSUPAG00010011960 ENSUPAG00010011956 #32 ENSUPAG00010011953 #14 ENSUPAG00010011950 ENSUPAG00010011944 ##36 ENSUPAG00010011938 #14 H1-5 (ENSUPAG00010011937) ENSUPAG00010011929 ENSUPAG00010011928 ENSUPAG00010011908 ENSUPAG00010011906 ENSUPAG00010011892 Arctic ground squirrel MODERN SPECIES 946 ENSUPAG00010001610 ENSUPAG00010001606 #32 H2BC18 (ENSUPAG00010001593) #14 FCGR1A (ENSUPAG00010001577) ENSUPAG00010001553 ENSUPAG00010001521 ENSUPAG00010001484 Squirrel DUPLICATION Squirrel MODERN SPECIES 180 C1orf54 (ENSSTOG00000006055) APH1A (ENSSTOG00000006041) CA14 (ENSSTOG00000027815) ENSSTOG00000004170 PLEKHO1 (ENSSTOG00000014249) VPS45 (ENSSTOG00000014236) OTUD7B (ENSSTOG00000026621) MTMR11 (ENSSTOG00000006589) ENSSTOG00000000684 SV2A (ENSSTOG00000006537) H2AC21 (ENSSTOG00000021582) H2AC20 (ENSSTOG00000025400) H2BC21 (ENSSTOG00000028429) ENSSTOG00000022473 ENSSTOG00000030339 #32 ENSSTOG00000028762 #32 FCGR1A (ENSSTOG00000028518) ENSSTOG00000031290 ENSSTOG00000027412 Squirrel MODERN SPECIES 180 ENSSTOG00000027412 ENSSTOG00000031290 FCGR1A (ENSSTOG00000028518) ENSSTOG00000028762 #32 ENSSTOG00000030339 #32 ENSSTOG00000022473 H2BC21 (ENSSTOG00000028429) H2AC20 (ENSSTOG00000025400) H2AC21 (ENSSTOG00000021582) SV2A (ENSSTOG00000006537) ENSSTOG00000000684 MTMR11 (ENSSTOG00000006589) OTUD7B (ENSSTOG00000026621) VPS45 (ENSSTOG00000014236) PLEKHO1 (ENSSTOG00000014249) ENSSTOG00000004170 CA14 (ENSSTOG00000027815) APH1A (ENSSTOG00000006041) C1orf54 (ENSSTOG00000006055) ENSSTOG00000024097 Squirrel MODERN SPECIES 271 ENSSTOG00000032774 ENSSTOG00000024781 H2BC3 (ENSSTOG00000034083) H1-2 (ENSSTOG00000025721) HFE (ENSSTOG00000015350) ENSSTOG00000029691 H1-6 (ENSSTOG00000024164) ENSSTOG00000034294 #14 H2AC6 (ENSSTOG00000034455) ENSSTOG00000029814 ##36 ENSSTOG00000029863 #14 ENSSTOG00000032348 ##36 ENSSTOG00000019576 #14 ENSSTOG00000033868 ENSSTOG00000032658 ENSSTOG00000034791 #32 ENSSTOG00000020189 ENSSTOG00000028273 ENSSTOG00000026857 ENSSTOG00000001676 BTN2A2 (ENSSTOG00000011871) BTN1A1 (ENSSTOG00000004034) ABT1 (ENSSTOG00000024481) ENSSTOG00000030249 ENSSTOG00000033423 ENSSTOG00000029728 ENSSTOG00000023645 ENSSTOG00000033773 ENSSTOG00000030654 ENSSTOG00000028749 #14 ENSSTOG00000026144 Alpin marmot DUPLICATION Alpin marmot MODERN SPECIES 36 ENSMMMG00000001937 ENSMMMG00000001926 #25 ENSMMMG00000001920 ENSMMMG00000001916 #14 ENSMMMG00000001889 #14 H1-4 (ENSMMMG00000001870) H2AC6 (ENSMMMG00000001865) ENSMMMG00000001860 #14 H1-6 (ENSMMMG00000001853) ENSMMMG00000001847 HFE (ENSMMMG00000001838) H1-2 (ENSMMMG00000001827) ENSMMMG00000001825 #32 H2BC3 (ENSMMMG00000001823) H2AC4 (ENSMMMG00000001814) ENSMMMG00000001805 #32 ENSMMMG00000001800 ENSMMMG00000001796 #15 ENSMMMG00000001785 H1-1 (ENSMMMG00000001780) TRIM38 (ENSMMMG00000001750) SLC17A2 (ENSMMMG00000001700) SLC17A4 (ENSMMMG00000001650) ENSMMMG00000001635 #14 ENSMMMG00000001626 #14 H2BC1 (ENSMMMG00000001621) ##36 H2AC1 (ENSMMMG00000001616) SCGN (ENSMMMG00000001573) CARMIL1 (ENSMMMG00000001132) ENSMMMG00000000774 RIPOR2 (ENSMMMG00000000738) Alpin marmot MODERN SPECIES 36 SCGN (ENSMMMG00000001573) H2AC1 (ENSMMMG00000001616) H2BC1 (ENSMMMG00000001621) ##36 ENSMMMG00000001626 #14 ENSMMMG00000001635 #14 SLC17A4 (ENSMMMG00000001650) SLC17A2 (ENSMMMG00000001700) TRIM38 (ENSMMMG00000001750) H1-1 (ENSMMMG00000001780) ENSMMMG00000001785 ENSMMMG00000001796 #15 ENSMMMG00000001800 ENSMMMG00000001805 #32 H2AC4 (ENSMMMG00000001814) H2BC3 (ENSMMMG00000001823) ENSMMMG00000001825 #32 H1-2 (ENSMMMG00000001827) HFE (ENSMMMG00000001838) ENSMMMG00000001847 H1-6 (ENSMMMG00000001853) ENSMMMG00000001860 #14 H2AC6 (ENSMMMG00000001865) H1-4 (ENSMMMG00000001870) ENSMMMG00000001889 #14 ENSMMMG00000001916 #14 ENSMMMG00000001920 ENSMMMG00000001926 #25 ENSMMMG00000001937 ENSMMMG00000001975 #14 ENSMMMG00000001983 ENSMMMG00000001989 ##28 Primates ANCESTRAL SPECIES 7 ENSGT00550000075028 ENSGT00940000159172 ENSGT00940000160276 ENSGT00870000136537 ENSGT00950000182940.b.a.b ENSGT00510000048165 ENSGT00940000153118.db.a.a.b.a.b ENSGT00940000153118.db.a.a.b.a.a ENSGT01100000263474.a.b.b.e.a.a.b ##36 ENSGT01100000263506.a.e.a.a.a.b.a.a.b.a.a #14 ENSGT01060000248528.b.jh.b ENSGT01100000263514.A.e.a.b.a.b.a.a.a.a ENSGT00940000153092.a.a.c.a.a ENSGT01100000263575.A ENSGT00940000156302 ENSGT01100000263559.B #32 ENSGT01100000263506.a.e.a.b #14 ENSGT01100000263559.A.f.e #25 ENSGT01100000263506.a.e.b #14 ENSGT01050000244808.A.b.b.a ENSGT00950000183190.a.b.a.b ENSGT00420000029746.f ENSGT00950000183112.b.b ENSGT00940000158522 ENSGT01060000248645 ENSGT00390000012355.B.b ENSGT00390000005869.a ENSGT00730000111185 ENSGT01050000244841.A.a.b ENSGT00390000014273.b ENSGT00940000158423 Strepsirrhini ANCESTRAL SPECIES 29 ENSGT00940000163102 ENSGT00940000159644 ENSGT00940000163521 ENSGT00940000161576 ENSGT00940000163165 ENSGT00940000163388 ENSGT00940000163486 ENSGT01100000263486.a.b.a.a.a.a.a.b.a.b.b.b ENSGT01100000263486.a.b.a.a.a.a.a.b.a.b.b.a ENSGT01100000263486.a.b.a.b.a ENSGT01100000263486.a.b.b ENSGT01100000263486.a.a ENSGT01100000263548.a.b.b ENSGT01100000263575.B.u ENSGT00940000156302 ENSGT01100000263559.B #32 ENSGT01100000263559.A.f.e #25 ENSGT01060000248528.b.kh.yb.b ENSGT01100000263514.A.e.a.b.a.b.a.a.a.b.a.a.a.a ENSGT00940000160426 ENSGT01100000263506.a.e.a.a.a.b.a.a.a #14 ENSGT00940000153092.a.a.c.a.a ENSGT01100000263514.A.e.a.b.a.b.a.a.a.b.a.b ENSGT01100000263514.A.e.a.b.a.b.a.b ENSGT00940000163082 ENSGT00940000162950 ENSGT01100000263474.a.b.b.e.a.a.b ##36 ENSGT00940000162941 ENSGT00940000153104.e.b.a.b ENSGT00940000160281 ENSGT00940000153125.A Lemuriformes ANCESTRAL SPECIES ENSGT01100000263559.B #32 Lemuriformes_a ANCESTRAL SPECIES ENSGT01100000263559.B #32 Coquerels sifaka MODERN SPECIES 750 APH1A (ENSPCOG00000016266) CA14 (ENSPCOG00000025811) ANP32E (ENSPCOG00000022218) PLEKHO1 (ENSPCOG00000027826) VPS45 (ENSPCOG00000011875) OTUD7B (ENSPCOG00000028177) MTMR11 (ENSPCOG00000027870) SF3B4 (ENSPCOG00000015399) SV2A (ENSPCOG00000018151) H2AC20 (ENSPCOG00000011857) H2BC21 (ENSPCOG00000010375) ENSPCOG00000012693 #25 ENSPCOG00000011625 ENSPCOG00000005500 ENSPCOG00000011101 H3C13 (ENSPCOG00000011308) #32 FCGR1A (ENSPCOG00000016186) ENSPCOG00000015554 Mouse lemur MODERN SPECIES 11 ENSMICG00000034870 ANP32E (ENSMICG00000015265) PLEKHO1 (ENSMICG00000027313) VPS45 (ENSMICG00000015188) ENSMICG00000035294 OTUD7B (ENSMICG00000047179) MTMR11 (ENSMICG00000000298) SF3B4 (ENSMICG00000044961) SV2A (ENSMICG00000000293) H2BC21 (ENSMICG00000044053) H2AC20 (ENSMICG00000048145) ENSMICG00000044581 #36 ENSMICG00000043363 H2AC18 (ENSMICG00000043969) ENSMICG00000046339 ENSMICG00000045632 #32 FCGR1A (ENSMICG00000033541) ENSMICG00000029326 HJV (ENSMICG00000037948) TXNIP (ENSMICG00000038247) POLR3GL (ENSMICG00000034663) ANKRD34A (ENSMICG00000044107) LIX1L (ENSMICG00000043095) RBM8A (ENSMICG00000031698) PEX11B (ENSMICG00000028232) ITGA10 (ENSMICG00000036050) ANKRD35 (ENSMICG00000028514) PIAS3 (ENSMICG00000033732) NUDT17 (ENSMICG00000031177) POLR3C (ENSMICG00000034253) RNF115 (ENSMICG00000044821) Bushbaby DUPLICATION Bushbaby MODERN SPECIES ENSOGAG00000028032 #32 ENSOGAG00000030176 ENSOGAG00000032631 ENSOGAG00000028067 ENSOGAG00000029978 ENSOGAG00000029164 #32 Bushbaby MODERN SPECIES ENSOGAG00000029164 #32 ENSOGAG00000029978 ENSOGAG00000028067 ENSOGAG00000032631 ENSOGAG00000030176 ENSOGAG00000028032 #32 Haplorrhini ANCESTRAL SPECIES 72 ENSGT01100000263474.a.b.b.f ##36 ENSGT00940000156302 ENSGT01100000263559.B #32 ENSGT01100000263506.a.e.a.b #14 Simiiformes ANCESTRAL SPECIES 45 ENSGT01100000263474.a.b.b.f ##36 ENSGT00940000156302 ENSGT01100000263559.B #32 ENSGT01100000263506.a.e.a.b #14 Platyrrhini ANCESTRAL SPECIES 12 ENSGT00530000063074.a ENSGT00940000158423 ENSGT00390000014273.b ENSGT01050000244841.A.a.b ENSGT00730000111185 ENSGT00390000005869.a ENSGT00390000012355.B.b ENSGT01060000248645 ENSGT00940000158522 ENSGT00950000183112.b.b ENSGT01050000244808.A.b.b.a ENSGT01100000263506.a.e.b #14 ENSGT01060000248528.b.kh.yb.b.b.a.a ENSGT01100000263559.A.f.e #25 ENSGT00940000156302 ENSGT01100000263559.B #32 ENSGT01100000263575.B.t.a.a.a ENSGT00940000153118.db.a.a.b.a.a ENSGT00940000153118.db.a.a.b.a.b ENSGT00510000048165 ENSGT00950000182940.b.a.b ENSGT00870000136537.o ENSGT00940000160276 ENSGT00940000159172 ENSGT00550000075028 ENSGT00530000063760.b ENSGT00950000182907.a.a ENSGT00940000156893 ENSGT00390000002049.c.a ENSGT00390000003103 ENSGT00390000018360 Cebidae ANCESTRAL SPECIES 12 ENSGT00530000063074.a ENSGT00940000158423 ENSGT00390000014273.b ENSGT01050000244841.A.a.b ENSGT00730000111185 ENSGT00390000005869.a ENSGT00390000012355.B.b ENSGT01060000248645 ENSGT00940000158522 ENSGT00950000183112.b.b ENSGT01050000244808.A.b.b.a ENSGT01100000263506.a.e.b #14 ENSGT01060000248528.b.kh.yb.b.b.a.a ENSGT01100000263559.A.f.e #25 ENSGT00940000156302 ENSGT01100000263559.B #32 ENSGT01100000263575.B.t.a.a.a ENSGT00940000153118.db.a.a.b.a.a ENSGT00940000153118.db.a.a.b.a.b ENSGT00510000048165 ENSGT00950000182940.b.a.b ENSGT00870000136537.o ENSGT00940000160276 ENSGT00940000159172 ENSGT00550000075028 ENSGT00530000063760.b ENSGT00950000182907.a.a ENSGT00940000156893 ENSGT00390000002049.c.a ENSGT00390000003103 ENSGT00390000018360 Cebidae_a ANCESTRAL SPECIES 6 ENSGT01050000244808.A.b.b.a ENSGT01100000263506.a.e.b #14 ENSGT01100000263559.A.f.e #25 ENSGT00940000156302 ENSGT01100000263559.B #32 ENSGT01100000263575.B.t.a.a.a ENSGT00940000153118.db.a.a.b.a.a ENSGT00940000153118.db.a.a.b.a.b ENSGT00950000182940.b.a.b ENSGT00870000136537.o ENSGT00940000160276 ENSGT00940000159172 ENSGT00550000075028 ENSGT00530000063760.b ENSGT00950000182907.a.a ENSGT00940000156893 ENSGT00390000002049.c.a ENSGT00390000003103 ENSGT00390000018360 ENSGT00500000045038.y.b Bolivian squirrel monkey MODERN SPECIES 194 FCGR1A (ENSSBOG00000035681) H2BC18 (ENSSBOG00000030913) #14 H3-7 (ENSSBOG00000018931) #25 H2AC19 (ENSSBOG00000019167) ENSSBOG00000014986 #32 ENSSBOG00000015704 ENSSBOG00000008360 H2AC20 (ENSSBOG00000019840) H2AC21 (ENSSBOG00000017659) SV2A (ENSSBOG00000030706) ENSSBOG00000012310 MTMR11 (ENSSBOG00000018459) OTUD7B (ENSSBOG00000022601) VPS45 (ENSSBOG00000029517) PLEKHO1 (ENSSBOG00000031989) ANP32E (ENSSBOG00000033935) CA14 (ENSSBOG00000024949) APH1A (ENSSBOG00000025150) C1orf54 (ENSSBOG00000013160) CIART (ENSSBOG00000024903) Marmoset MODERN SPECIES 9 ENSCJAG00000083457 ENSCJAG00000081006 ENSCJAG00000084541 ENSCJAG00000020687 ENSCJAG00000062347 ENSCJAG00000078453 ENSCJAG00000084089 ENSCJAG00000069867 FCGR1A (ENSCJAG00000000771) ENSCJAG00000074017 H2BC18 (ENSCJAG00000041683) #14 ENSCJAG00000087228 ENSCJAG00000083438 #25 H2AC18 (ENSCJAG00000073890) ENSCJAG00000078694 ENSCJAG00000078934 #32 ENSCJAG00000086954 H2BC21 (ENSCJAG00000081464) H2AC20 (ENSCJAG00000048427) BOLA1 (ENSCJAG00000044018) SV2A (ENSCJAG00000000779) SF3B4 (ENSCJAG00000042351) MTMR11 (ENSCJAG00000000802) OTUD7B (ENSCJAG00000000821) VPS45 (ENSCJAG00000000845) PLEKHO1 (ENSCJAG00000000867) ANP32E (ENSCJAG00000009710) CA14 (ENSCJAG00000009756) APH1A (ENSCJAG00000009786) C1orf54 (ENSCJAG00000009890) CIART (ENSCJAG00000009905) Mas night monkey DUPLICATION Mas night monkey MODERN SPECIES 194 ENSANAG00000031357 #32 ENSANAG00000031309 ENSANAG00000021805 ENSANAG00000006272 #32 Mas night monkey MODERN SPECIES 194 ENSANAG00000006272 #32 ENSANAG00000021805 ENSANAG00000031309 ENSANAG00000031357 #32 Catarrhini ANCESTRAL SPECIES 45 ENSGT01100000263474.a.b.b.f ##36 ENSGT00940000156302 ENSGT01100000263559.B #32 ENSGT01100000263506.a.e.a.b #14 Cercopithecidae ANCESTRAL SPECIES 4 ENSGT00910000147195 ENSGT00950000183105.B.a.a.a.a ENSGT01100000263506.a.f.b #14 ENSGT01060000248528.b.kh.yb.a.b ENSGT01100000263548.a.b.b ENSGT01100000263575.B.u ENSGT00940000153125.E.c.b ENSGT01100000263514.A.e.a.b.a.b.a.a.a.b.a.a.a.a ENSGT00940000153125.A ENSGT01100000263474.a.b.b.e.a.a.a.a ##36 ENSGT01100000263567.a.b ##35 ENSGT01100000263506.a.e.a.a.a.b.a.a.a #14 ENSGT01060000248528.b.kh.yb.b.a.lb.a ENSGT01100000263559.A.f.e #25 ENSGT00940000156302 ENSGT01100000263559.B #32 ENSGT01060000248528.b.jh.b ENSGT01100000263514.A.e.a.b.a.b.a.a.a.a ENSGT00940000153092.a.a.c.a.a ENSGT01100000263575.A ENSGT01100000263514.A.e.a.b.a.b.a.a.b ENSGT01060000248528.b.kh.yb.b.b.b.b ENSGT01020000230360.c.b.a.b.a.b ##31 ENSGT01100000263514.A.e.a.b.a.b.a.a.a.b.a.b ENSGT00940000153125.D.a.a ENSGT01100000263474.a.b.b.e.a.a.a.b ##36 ENSGT00940000162950 ENSGT00940000163388 ENSGT00940000163165 ENSGT00400000024870 ENSGT00940000161576 Rhinopithecus ANCESTRAL SPECIES 721 ENSGT00940000156302 ENSGT01100000263559.B #32 ENSGT01060000248528.b.jh.b ENSGT01100000263474.a.b.b.e.a.a.a.a ##36 ENSGT00940000153125.D.a.b Golden snub-nosed monkey MODERN SPECIES 2973 H2AC18 (ENSRROG00000012185) ENSRROG00000009298 #32 H4C15 (ENSRROG00000022198) Cercopithecinae ANCESTRAL SPECIES 81 ENSGT00940000156302 ENSGT01100000263559.B #32 Cercopithecinae_a ANCESTRAL SPECIES 100 ENSGT00940000156302 ENSGT01100000263559.B #32 Cercopithecinae_b ANCESTRAL SPECIES 3 ENSGT00390000003103 ENSGT00390000002049.c.a ENSGT00940000156893 ENSGT00950000182907.a.a ENSGT00530000063760.b ENSGT00550000075028 ENSGT00940000159172 ENSGT00940000160276 ENSGT00870000136537.m ENSGT00950000182940.b.a.b ENSGT00510000048165 ENSGT00940000153118.db.a.a.b.a.b ENSGT00940000153118.db.a.a.b.a.a ENSGT01100000263575.B.t.a.b ENSGT00940000156302 ENSGT01100000263559.B #32 ENSGT01100000263506.a.e.b #14 ENSGT01050000244808.A.b.b.a ENSGT00940000160915.e.b ENSGT00950000183190.a.b.a.b ENSGT00420000029746.f.c.b.a ENSGT00390000009543.d ENSGT00420000029746.f.c.a ENSGT00420000029746.f.c.b.b ENSGT00400000022759 ENSGT00940000154913.g.b ENSGT00910000147134 ENSGT01050000244864.D ENSGT01050000244864.C ENSGT00940000158408 ENSGT00730000110915.b Olive baboon MODERN SPECIES APH1A (ENSPANG00000008739) CA14 (ENSPANG00000012135) ANP32E (ENSPANG00000032905) PLEKHO1 (ENSPANG00000007434) VPS45 (ENSPANG00000012294) OTUD7B (ENSPANG00000009169) MTMR11 (ENSPANG00000020583) SF3B4 (ENSPANG00000005126) SV2A (ENSPANG00000008740) BOLA1 (ENSPANG00000005165) H2AC21 (ENSPANG00000048915) H2BC21 (ENSPANG00000043204) ENSPANG00000033703 H2AC20 (ENSPANG00000040460) ENSPANG00000049378 H3C13 (ENSPANG00000045449) #32 H2BC18 (ENSPANG00000040080) #14 FCGR1A (ENSPANG00000001763) ENSPANG00000002791 ENSPANG00000036881 ENSPANG00000037189 ENSPANG00000012430 ENSPANG00000037273 ENSPANG00000049208 GJA8 (ENSPANG00000014667) ENSPANG00000040876 GJA5 (ENSPANG00000014222) ACP6 (ENSPANG00000004993) BCL9 (ENSPANG00000021034) CHD1L (ENSPANG00000009170) ENSPANG00000005600 Cercopithecinae_d ANCESTRAL SPECIES 131 ENSGT00940000156302 ENSGT01100000263559.B #32 ENSGT01060000248528.b.kh.yb.b.a.lb.a ENSGT01100000263559.A.f.e #25 ENSGT01100000263506.a.e.b #14 ENSGT01050000244808.A.b.b.a ENSGT00940000160915.e.b ENSGT00420000029746.f.c.b.a ENSGT00390000009543.d ENSGT00420000029746.f.c.a ENSGT00420000029746.f.c.b.b ENSGT00400000022759 ENSGT00940000154913.g.b ENSGT00910000147134 ENSGT01050000244864.D ENSGT01050000244864.C ENSGT00940000158408 Sooty mangabey DUPLICATION Sooty mangabey MODERN SPECIES 194 ENSCATG00000006942 #32 ENSCATG00000026319 ##31 ENSCATG00000023800 ENSCATG00000017808 #32 H2BC18 (ENSCATG00000029818) #14 FCGR1A (ENSCATG00000036763) ENSCATG00000042090 ENSCATG00000040171 ENSCATG00000045009 ENSCATG00000032168 ENSCATG00000008183 ENSCATG00000000382 ENSCATG00000040939 ENSCATG00000033281 ENSCATG00000042443 GJA8 (ENSCATG00000015119) GJA5 (ENSCATG00000007536) ACP6 (ENSCATG00000014613) BCL9 (ENSCATG00000030994) Sooty mangabey MODERN SPECIES 194 GJA8 (ENSCATG00000015119) ENSCATG00000042443 ENSCATG00000033281 ENSCATG00000040939 ENSCATG00000000382 ENSCATG00000008183 ENSCATG00000032168 ENSCATG00000045009 ENSCATG00000040171 ENSCATG00000042090 FCGR1A (ENSCATG00000036763) H2BC18 (ENSCATG00000029818) #14 ENSCATG00000017808 #32 ENSCATG00000023800 ENSCATG00000026319 ##31 ENSCATG00000006942 #32 Macaca ANCESTRAL SPECIES ENSGT00510000048165 ENSGT00940000153118.db.a.a.b.a.b ENSGT00940000153118.db.a.a.b.a.a ENSGT01100000263575.B.u ENSGT01100000263548.a.b.b ENSGT01060000248528.b.kh.yb.a.b ENSGT01100000263506.a.f.b #14 ENSGT01060000248528.b.jh.b ENSGT01100000263514.A.e.a.b.a.b.a.a.a.a ENSGT01100000263506.a.e.a.a.a.b.a.a.b.a.b.a.a.a #14 ENSGT01060000248528.b.kh.yb.b.a.mb ENSGT00940000155501.a.b ENSGT01100000263514.A.e.a.b.a.b.a.a.a.b.a.b ENSGT00940000153092.a.a.c.a.a ENSGT01100000263575.A ENSGT01100000263559.B #32 ENSGT01100000263506.a.e.b #14 ENSGT01050000244808.A.b.b.a ENSGT00940000160915.e.b ENSGT00950000183190.a.b.a.b ENSGT00420000029746.f.c.b.b ENSGT00420000029746.f.c.b.a ENSGT00390000009543.d ENSGT00420000029746.f.c.a ENSGT00400000022759 ENSGT00910000147134 ENSGT01050000244864.D ENSGT01030000234531.A.b.b.b.b.b.e.b.a ENSGT01050000244864.C ENSGT00940000158408 ENSGT00730000110915.b Pig-tailed macaque MODERN SPECIES 556 ENSMNEG00000015126 #25 H2AC19 (ENSMNEG00000011270) ENSMNEG00000034002 ENSMNEG00000007282 H3C13 (ENSMNEG00000026749) #32 H2BC18 (ENSMNEG00000038342) #14 FCGR1A (ENSMNEG00000033591) ENSMNEG00000042893 ENSMNEG00000042265 ENSMNEG00000034285 ENSMNEG00000039666 ENSMNEG00000043241 ENSMNEG00000040861 ENSMNEG00000040511 ENSMNEG00000038867 ENSMNEG00000039748 ENSMNEG00000029417 ENSMNEG00000044380 GJA8 (ENSMNEG00000029170) ENSMNEG00000034524 Macaca_a ANCESTRAL SPECIES ENSGT00500000045038.y.b.b ENSGT00390000018360 ENSGT00390000003103 ENSGT00390000002049.c.a ENSGT00940000156893 ENSGT00950000182907.a.a ENSGT00530000063760.b ENSGT00550000075028 ENSGT00940000159172 ENSGT00940000160276 ENSGT00870000136537.m ENSGT00950000182940.b.a.b ENSGT00510000048165 ENSGT00940000153118.db.a.a.b.a.b ENSGT00940000153118.db.a.a.b.a.a ENSGT01100000263559.B #32 ENSGT01100000263506.a.e.b #14 ENSGT01050000244808.A.b.b.a ENSGT00940000160915.e.b ENSGT00950000183190.a.b.a.b ENSGT00420000029746.f.c.b.b ENSGT00400000022759 ENSGT00960000186796.b.b.a ENSGT00910000147134 ENSGT01050000244864.D ENSGT01050000244864.C ENSGT00940000158408 ENSGT00730000110915.b ENSGT00940000159402 ENSGT00940000160493 ENSGT00940000159284 Rhesus MODERN SPECIES C1H1orf54 (ENSMMUG00000021387) APH1A (ENSMMUG00000021386) CA14 (ENSMMUG00000021385) ANP32E (ENSMMUG00000021531) PLEKHO1 (ENSMMUG00000013681) VPS45 (ENSMMUG00000013673) OTUD7B (ENSMMUG00000007244) ENSMMUG00000052282 MTMR11 (ENSMMUG00000007246) SF3B4 (ENSMMUG00000007256) SV2A (ENSMMUG00000007257) BOLA1 (ENSMMUG00000007258) H2AC21 (ENSMMUG00000061036) H2AC20 (ENSMMUG00000037540) H4C14 (ENSMMUG00000052382) H3C13 (ENSMMUG00000054078) #32 H2BC18 (ENSMMUG00000040506) #14 FCGR1A (ENSMMUG00000004362) ENSMMUG00000062140 ENSMMUG00000048493 ENSMMUG00000057963 ENSMMUG00000056619 GJA8 (ENSMMUG00000001382) GJA5 (ENSMMUG00000001803) ACP6 (ENSMMUG00000013561) BCL9 (ENSMMUG00000016786) FMO5 (ENSMMUG00000000476) CHD1L (ENSMMUG00000009024) PRKAB2 (ENSMMUG00000012221) ENSMMUG00000050315 ENSMMUG00000065207 Hominoidea ANCESTRAL SPECIES 51 ENSGT01100000263474.a.b.b.f ##36 ENSGT00940000156302 ENSGT01100000263559.B #32 ENSGT01100000263506.a.e.a.b #14 Hominidae ANCESTRAL SPECIES 48 ENSGT01100000263474.a.b.b.f ##36 ENSGT00940000156302 ENSGT01100000263559.B #32 ENSGT01100000263506.a.e.a.b #14 Homo/Pan/Gorilla group ANCESTRAL SPECIES 4 ENSGT00940000161530 ENSGT00940000163835.a.a ENSGT00940000162723.c.a ENSGT00940000163835.a.b ENSGT00940000163036 ENSGT00940000158017 ENSGT00940000162723.c.b ENSGT01100000263506.a.e.a.a.a.a.a #14 ENSGT00940000155501.a.b ENSGT01100000263514.A.e.a.a ENSGT01100000263514.A.e.a.b.a.a.d ENSGT00940000153092.a.a.c.a.b ENSGT01100000263506.a.e.a.a.a.b.a.a.b.a.a.j #14 ENSGT01100000263474.a.b.b.f ##36 ENSGT00940000156302 ENSGT01100000263559.B #32 ENSGT01060000248528.b.jh.b ENSGT01100000263514.A.e.a.b.a.b.a.a.a.b.a.a.a.a ENSGT00940000153092.a.a.c.a.a ENSGT01100000263506.a.e.a.a.a.a.b.a #14 ENSGT01100000263506.a.e.a.a.a.b.a.a.b.a.b.b #14 ENSGT00940000160426 ENSGT01100000263514.A.e.a.b.a.b.a.a.b ENSGT01100000263514.A.e.a.b.b ENSGT01060000248528.b.jh.a.a.b ENSGT01100000263506.a.e.a.a.a.a.b.b #14 ENSGT00940000153125.C ENSGT01100000263506.a.e.a.a.a.b.a.a.b.a.a.i.b #14 ENSGT01100000263474.a.b.b.e.a.a.a.b ##36 ENSGT00940000155501.a.a ENSGT00940000153092.a.b.f Gorilla MODERN SPECIES ENSGGOG00000015122 ENSGGOG00000040707 ENSGGOG00000043630 ENSGGOG00000039869 ENSGGOG00000041997 ENSGGOG00000037973 ENSGGOG00000037739 ENSGGOG00000039911 ENSGGOG00000041808 #14 ENSGGOG00000036188 ENSGGOG00000039364 HIST2H3A (ENSGGOG00000041476) #25 HIST2H2AA3 (ENSGGOG00000043514) ENSGGOG00000040718 #14 HIST2H2AA3 (ENSGGOG00000040128) HIST2H3A (ENSGGOG00000037264) #32 ENSGGOG00000036863 H2BC21 (ENSGGOG00000036989) HIST2H2AC (ENSGGOG00000040152) H2AC21 (ENSGGOG00000040311) BOLA1 (ENSGGOG00000002957) SV2A (ENSGGOG00000002959) SF3B4 (ENSGGOG00000004761) MTMR11 (ENSGGOG00000004764) OTUD7B (ENSGGOG00000024965) VPS45 (ENSGGOG00000026516) PLEKHO1 (ENSGGOG00000002021) ENSGGOG00000011889 CA14 (ENSGGOG00000017116) APH1A (ENSGGOG00000017118) C1orf54 (ENSGGOG00000016964) Homo/Pan group ANCESTRAL SPECIES 5 ENSGT00940000155501.a.b ENSGT01100000263514.A.e.a.b.a.b.a.a.b ENSGT00940000160426 ENSGT01100000263514.A.e.a.b.b ENSGT01060000248528.b.jh.a.a.b ENSGT01100000263506.a.e.a.a.a.a.b.b #14 ENSGT00940000153125.C ENSGT00990000203553.c.b #28 ENSGT01100000263474.a.b.b.e.a.a.a.a ##36 ENSGT00940000155501.a.a ENSGT00940000153092.a.b.f ENSGT01100000263506.a.e.a.a.a.b.a.a.b.a.b.a.a.a #14 ENSGT00940000163525 ENSGT01100000263474.a.b.b.f ##36 ENSGT00940000156302 ENSGT01100000263559.B #32 ENSGT01060000248528.b.jh.b ENSGT01100000263514.A.e.a.b.a.b.a.a.a.b.a.a.a.a ENSGT00940000153125.E.c.b ENSGT00940000153118.db.b ENSGT01100000263474.a.b.b.e.a.a.a.b ##36 ENSGT01100000263506.a.e.a.a.a.b.a.a.b.a.a.i.b #14 ENSGT01060000248528.b.kh.yb.b.b.a.a ENSGT01100000263514.A.e.a.b.a.b.a.a.a.a ENSGT00940000153092.a.a.c.a.a ENSGT01100000263506.a.e.a.a.a.a.b.a #14 ENSGT01060000248528.b.kh.yb.b.a ENSGT01100000263517.b.d.m.a.a.b ENSGT00940000163082 ENSGT01100000263514.A.e.a.b.a.b.a.b ENSGT01100000263575.A Human DUPLICATION Human MODERN SPECIES NOTCH2NLB (ENSG00000286019) NUDT4B (ENSG00000177144) PDE4DIP (ENSG00000178104) NBPF9 (ENSG00000269713) NOTCH2NLC (ENSG00000286219) ENSG00000286185 NBPF19 (ENSG00000271383) PPIAL4C (ENSG00000288867) FCGR1A (ENSG00000150337) H2BC18 (ENSG00000203814) #14 H3C13 (ENSG00000183598) #32 H4C14 (ENSG00000270882) H3C14 (ENSG00000203811) #32 H2AC18 (ENSG00000288825) H2AC19 (ENSG00000288859) H3C15 (ENSG00000203852) #32 H4C15 (ENSG00000270276) H2BC21 (ENSG00000184678) H2AC20 (ENSG00000184260) H2AC21 (ENSG00000184270) BOLA1 (ENSG00000178096) SV2A (ENSG00000159164) SF3B4 (ENSG00000143368) MTMR11 (ENSG00000014914) OTUD7B (ENSG00000264522) VPS45 (ENSG00000136631) PLEKHO1 (ENSG00000023902) ANP32E (ENSG00000143401) CA14 (ENSG00000118298) APH1A (ENSG00000117362) C1orf54 (ENSG00000118292) Human MODERN SPECIES VPS45 (ENSG00000136631) OTUD7B (ENSG00000264522) MTMR11 (ENSG00000014914) SF3B4 (ENSG00000143368) SV2A (ENSG00000159164) BOLA1 (ENSG00000178096) H2AC21 (ENSG00000184270) H2AC20 (ENSG00000184260) H2BC21 (ENSG00000184678) H4C15 (ENSG00000270276) H3C15 (ENSG00000203852) #32 H2AC19 (ENSG00000288859) H2AC18 (ENSG00000288825) H3C14 (ENSG00000203811) #32 H4C14 (ENSG00000270882) H3C13 (ENSG00000183598) #32 H2BC18 (ENSG00000203814) #14 FCGR1A (ENSG00000150337) PPIAL4C (ENSG00000288867) NBPF19 (ENSG00000271383) ENSG00000286185 NOTCH2NLC (ENSG00000286219) NBPF9 (ENSG00000269713) PDE4DIP (ENSG00000178104) NUDT4B (ENSG00000177144) NOTCH2NLB (ENSG00000286019) NBPF14 (ENSG00000270629) PPIAL4G (ENSG00000236334) NBPF11 (ENSG00000263956) GPR89B (ENSG00000188092) GJA8 (ENSG00000121634) Human MODERN SPECIES ANP32E (ENSG00000143401) PLEKHO1 (ENSG00000023902) VPS45 (ENSG00000136631) OTUD7B (ENSG00000264522) MTMR11 (ENSG00000014914) SF3B4 (ENSG00000143368) SV2A (ENSG00000159164) BOLA1 (ENSG00000178096) H2AC21 (ENSG00000184270) H2AC20 (ENSG00000184260) H2BC21 (ENSG00000184678) H4C15 (ENSG00000270276) H3C15 (ENSG00000203852) #32 H2AC19 (ENSG00000288859) H2AC18 (ENSG00000288825) H3C14 (ENSG00000203811) #32 H4C14 (ENSG00000270882) H3C13 (ENSG00000183598) #32 H2BC18 (ENSG00000203814) #14 FCGR1A (ENSG00000150337) PPIAL4C (ENSG00000288867) NBPF19 (ENSG00000271383) ENSG00000286185 NOTCH2NLC (ENSG00000286219) NBPF9 (ENSG00000269713) PDE4DIP (ENSG00000178104) NUDT4B (ENSG00000177144) NOTCH2NLB (ENSG00000286019) NBPF14 (ENSG00000270629) PPIAL4G (ENSG00000236334) NBPF11 (ENSG00000263956) Pan ANCESTRAL SPECIES 55 ENSGT01100000263474.a.b.b.f.b ##36 ENSGT01100000263474.a.b.b.f.a ##36 ENSGT00940000156302 ENSGT01100000263559.B #32 Chimpanzee MODERN SPECIES 319 H3C13 (ENSPTRG00000044724) #25 ENSPTRG00000044548 ENSPTRG00000046524 ##36 ENSPTRG00000047237 ##36 H2AC19 (ENSPTRG00000046303) H3C13 (ENSPTRG00000049585) #32 Bonobo MODERN SPECIES 213 ENSPPAG00000032669 #25 ENSPPAG00000035234 ##36 ENSPPAG00000035334 ##36 ENSPPAG00000010106 ENSPPAG00000032850 #32 Orangutan DUPLICATION Orangutan MODERN SPECIES CA14 (ENSPPYG00000000906) ANP32E (ENSPPYG00000000907) PLEKHO1 (ENSPPYG00000034117) VPS45 (ENSPPYG00000000909) OTUD7B (ENSPPYG00000000910) MTMR11 (ENSPPYG00000000911) SF3B4 (ENSPPYG00000000912) SV2A (ENSPPYG00000000913) BOLA1 (ENSPPYG00000040309) H2AC21 (ENSPPYG00000035072) ENSPPYG00000030729 H2BC21 (ENSPPYG00000000917) ENSPPYG00000000922 ENSPPYG00000039474 #14 ENSPPYG00000036744 ENSPPYG00000036244 #32 ENSPPYG00000032863 #32 ENSPPYG00000031542 #14 FCGR1A (ENSPPYG00000019984) ENSPPYG00000039543 ENSPPYG00000038344 ENSPPYG00000032672 ENSPPYG00000040768 ENSPPYG00000039570 ENSPPYG00000000924 ENSPPYG00000033178 ENSPPYG00000034414 ENSPPYG00000000953 ENSPPYG00000041334 ENSPPYG00000000952 PDE4DIP (ENSPPYG00000030940) Orangutan MODERN SPECIES ANP32E (ENSPPYG00000000907) PLEKHO1 (ENSPPYG00000034117) VPS45 (ENSPPYG00000000909) OTUD7B (ENSPPYG00000000910) MTMR11 (ENSPPYG00000000911) SF3B4 (ENSPPYG00000000912) SV2A (ENSPPYG00000000913) BOLA1 (ENSPPYG00000040309) H2AC21 (ENSPPYG00000035072) ENSPPYG00000030729 H2BC21 (ENSPPYG00000000917) ENSPPYG00000000922 ENSPPYG00000039474 #14 ENSPPYG00000036744 ENSPPYG00000036244 #32 ENSPPYG00000032863 #32 ENSPPYG00000031542 #14 FCGR1A (ENSPPYG00000019984) ENSPPYG00000039543 ENSPPYG00000038344 ENSPPYG00000032672 ENSPPYG00000040768 ENSPPYG00000039570 ENSPPYG00000000924 ENSPPYG00000033178 ENSPPYG00000034414 ENSPPYG00000000953 ENSPPYG00000041334 ENSPPYG00000000952 PDE4DIP (ENSPPYG00000030940) ENSPPYG00000040487 Laurasiatheria ANCESTRAL SPECIES ENSGT00940000153118.db.a.a.b.a.b ENSGT00940000153118.db.a.a.b.a.a ENSGT01100000263575.B.u ENSGT01100000263504.a.b.b.b.a.b ENSGT01100000263506.a.e.a.a.b.a #14 ENSGT00940000153092.a.a.c.a.a ENSGT01100000263514.A.e.a.b.a.b.a.a.a.b.a.b ENSGT00940000153125.C ENSGT01100000263506.a.e.a.a.a.a.b.b #14 ENSGT00990000203553.c.a.a.a.b ##28 ENSGT01100000263514.A.e.a.b.a.b.a.a.a.a ENSGT00940000153092.a.a.c.a.b ENSGT01100000263575.A ENSGT01100000263575.B.t.a.a.a ENSGT00940000156302 ENSGT01100000263559.B #32 ENSGT01100000263569.a.b.b ENSGT00940000164494 ENSGT01060000248528.a.b.a.a.a.b ENSGT01100000263559.A.f #25 ENSGT01100000263506.a.e.b #14 ENSGT01050000244808.A.b.b.a ENSGT00950000183190.a.b.a.b ENSGT00420000029746.f ENSGT00950000183112.b.b ENSGT00940000158522 ENSGT01060000248645 ENSGT00390000012355.B.b ENSGT00390000005869.a ENSGT00730000111185 ENSGT01050000244841.A.a.b Eulipotyphla ANCESTRAL SPECIES 377 ENSGT01100000263559.B #32 ENSGT01100000263506.a.e.b #14 ENSGT01060000248528.b.jh.b ENSGT01100000263514.A.e.a.b.a.a.a.b Hedgehog MODERN SPECIES 16224 H3C13 (ENSEEUG00000006126) #32 H2BC18 (ENSEEUG00000006137) #14 Laurasiatheria_a ANCESTRAL SPECIES ENSGT00530000063760.b ENSGT00550000075028 ENSGT00940000159172 ENSGT00940000160276 ENSGT00870000136537 ENSGT00950000182940.b.a.b ENSGT00510000048165 ENSGT00940000153118.db.a.a.b.a.b ENSGT00940000153118.db.a.a.b.a.a ENSGT01100000263575.A ENSGT00940000153092.a.a.c.a.b ENSGT01100000263514.A.e.a.b.a.b.a.a.a.a ENSGT00990000203553.c.a.a.a.b ##28 ENSGT01100000263575.B.u ENSGT00940000156302 ENSGT01100000263559.B #32 ENSGT01100000263569.a.b.b ENSGT00940000164494 ENSGT01060000248528.a.b.a.a.a.b ENSGT01100000263559.A.f #25 ENSGT01100000263506.a.e.b #14 ENSGT01050000244808.A.b.b.a ENSGT00950000183190.a.b.a.b ENSGT00420000029746.f ENSGT00950000183112.b.b ENSGT00940000158522 ENSGT01060000248645 ENSGT00390000012355.B.b ENSGT00390000005869.a ENSGT00730000111185 ENSGT01050000244841.A.a.b Artiodactyla ANCESTRAL SPECIES ENSGT00550000075028 ENSGT00940000159172 ENSGT00940000160276 ENSGT00870000136537 ENSGT00950000182940.b.a.b ENSGT00510000048165 ENSGT00940000153118.db.a.a.b.a.b ENSGT00940000153118.db.a.a.b.a.a ENSGT01100000263575.A ENSGT00940000153092.a.a.c.a.b.b.b ENSGT01100000263514.A.e.a.b.a.b.a.a.a.a ENSGT00990000203553.c.a.a.a.b ##28 ENSGT01100000263506.a.e.a.a.b.b #14 ENSGT01100000263474.a.b.b.e.a.a.a.b ##36 ENSGT00940000153118.db.b ENSGT01100000263559.B #32 ENSGT01100000263506.a.e.b #14 ENSGT01050000244808.A.b.b.a ENSGT00950000183190.a.b.a.b ENSGT00420000029746.f ENSGT00950000183112.b.b ENSGT00940000158522 ENSGT01060000248645 ENSGT00390000012355.B.b ENSGT00390000005869.a ENSGT00730000111185 ENSGT01050000244841.A.a.b ENSGT00390000014273.b ENSGT00940000158423 ENSGT00530000063074.a ENSGT01030000234539.a.a.b.a.a Artiodactyla_a ANCESTRAL SPECIES ENSGT00940000156893 ENSGT00950000182907.a.a ENSGT00530000063760.b ENSGT00550000075028 ENSGT00940000159172 ENSGT00940000160276 ENSGT00870000136537 ENSGT00950000182940.b.a.b ENSGT00510000048165 ENSGT00940000153118.db.a.a.b.a.b ENSGT00940000153118.db.a.a.b.a.a ENSGT01100000263575.B.u ENSGT01100000263506.a.e.a.a.a.a.a #14 ENSGT01100000263575.B.t.a.a.a ENSGT00940000156302 ENSGT01100000263559.B #32 ENSGT01100000263569.a.b.b ENSGT00940000164494 ENSGT01060000248528.a.b.a.a.a.b ENSGT01100000263559.A.f #25 ENSGT01100000263506.a.e.b #14 ENSGT01050000244808.A.b.b.a ENSGT00950000183190.a.b.a.b ENSGT00420000029746.f ENSGT00950000183112.b.b ENSGT00940000158522 ENSGT01060000248645 ENSGT00390000012355.B.b ENSGT00390000005869.a ENSGT00730000111185 ENSGT01050000244841.A.a.b Artiodactyla_b ANCESTRAL SPECIES ENSGT01050000244841.A.a.b ENSGT00730000111185 ENSGT00390000005869.a ENSGT00390000012355.B.b ENSGT01060000248645 ENSGT00940000158522 ENSGT00950000183112.b.b ENSGT00420000029746.f ENSGT00950000183190.a.b.a.b ENSGT01050000244808.A.b.b.a ENSGT01100000263506.a.e.b #14 ENSGT01100000263514.A.e.a.a ENSGT01060000248528.b.jh.b ENSGT01100000263575.B.t.a.a.a ENSGT00940000156302 ENSGT01100000263559.B #32 ENSGT01100000263569.a.b.b ENSGT00940000164494 ENSGT01060000248528.a.b.a.a.a.b ENSGT01100000263559.A.f #25 ENSGT01100000263575.B.u ENSGT00940000153118.db.a.a.b.a.a ENSGT00940000153118.db.a.a.b.a.b ENSGT00510000048165 ENSGT00950000182940.b.a.b ENSGT00870000136537 ENSGT00940000160276 ENSGT00940000159172 ENSGT00550000075028 ENSGT00530000063760.b ENSGT00950000182907.a.a Cetacea ANCESTRAL SPECIES ENSGT00390000005869.a ENSGT00390000012355.B.b ENSGT01060000248645 ENSGT00940000158522 ENSGT00950000183112.b.b ENSGT00420000029746.f ENSGT00950000183190.a.b.a.b ENSGT01100000263506.a.e.b #14 ENSGT01100000263559.A.f #25 ENSGT01060000248528.b.jh.b ENSGT01100000263506.a.e.a.a.a.a.a #14 ENSGT00940000156302.m.a ENSGT01100000263575.B.t.a.a.a.a.a ENSGT01100000263575.B.t.a.a.a.a.b ENSGT00940000156302.m.b ENSGT01100000263559.B #32 ENSGT01100000263575.B.u ENSGT00940000153118.db.a.a.b.a.a ENSGT00940000153118.db.a.a.b.a.b ENSGT00510000048165 ENSGT00950000182940.b.a.b ENSGT00870000136537 ENSGT00940000160276 ENSGT00940000159172 ENSGT00550000075028 ENSGT00530000063760.b ENSGT00950000182907.a.a ENSGT00940000156893 ENSGT00390000002049.c.a ENSGT00390000003103 ENSGT00390000018360 Odontoceti ANCESTRAL SPECIES ENSGT00730000111185 ENSGT00390000005869.a ENSGT00390000012355.B.b ENSGT01060000248645 ENSGT00940000158522 ENSGT00950000183112.b.b ENSGT00420000029746.f ENSGT00950000183190.a.b.a.b ENSGT01100000263506.a.e.b #14 ENSGT01100000263575.B.t.a.a.b ENSGT01100000263559.A.f #25 ENSGT00940000156302.m.b ENSGT01100000263575.B.t.a.a.a.a.b ENSGT01100000263575.B.t.a.a.a.a.a ENSGT00940000156302.m.a ENSGT01100000263559.B #32 ENSGT01100000263575.B.u ENSGT00940000153118.db.a.a.b.a.a ENSGT00940000153118.db.a.a.b.a.b ENSGT00510000048165 ENSGT00950000182940.b.a.b ENSGT00870000136537 ENSGT00940000160276 ENSGT00940000159172 ENSGT00550000075028 ENSGT00530000063760.b ENSGT00950000182907.a.a ENSGT00940000156893 ENSGT00390000002049.c.a ENSGT00390000003103 ENSGT00390000018360 Odontoceti_a ANCESTRAL SPECIES ENSGT01050000244841.A.a.b ENSGT00730000111185 ENSGT00390000005869.a ENSGT00390000012355.B.b ENSGT01060000248645 ENSGT00940000158522 ENSGT00950000183112.b.b ENSGT00420000029746.f ENSGT00950000183190.a.b.a.b ENSGT01100000263506.a.e.b #14 ENSGT01100000263559.A.f #25 ENSGT00940000156302.m.b ENSGT01100000263575.B.t.a.a.a.a.b ENSGT01100000263575.B.t.a.a.a.a.a ENSGT00940000156302.m.a.b ENSGT01100000263559.B #32 ENSGT01100000263575.B.u ENSGT00940000153118.db.a.a.b.a.a ENSGT00940000153118.db.a.a.b.a.b ENSGT00510000048165 ENSGT00950000182940.b.a.b ENSGT00870000136537 ENSGT00940000160276 ENSGT00940000159172 ENSGT00550000075028 ENSGT00530000063760.b ENSGT00950000182907.a.a ENSGT00940000156893 ENSGT00390000002049.c.a ENSGT00390000003103 ENSGT00390000018360 Dolphin MODERN SPECIES 2133 H2BC18 (ENSTTRG00000005097) #14 H3-7 (ENSTTRG00000005108) #25 ENSTTRG00000005120 ENSTTRG00000005132 ENSTTRG00000005136 H3C14 (ENSTTRG00000005140) #32 H2BC21 (ENSTTRG00000005143) H2AC20 (ENSTTRG00000005146) H2AC21 (ENSTTRG00000005162) BOLA1 (ENSTTRG00000005176) SV2A (ENSTTRG00000005189) SF3B4 (ENSTTRG00000005217) MTMR11 (ENSTTRG00000005231) OTUD7B (ENSTTRG00000005256) Odontoceti_b ANCESTRAL SPECIES ENSGT00530000063760.b ENSGT00550000075028 ENSGT00940000159172 ENSGT00940000160276 ENSGT00870000136537 ENSGT00950000182940.b.a.b ENSGT00510000048165 ENSGT00940000153118.db.a.a.b.a.b ENSGT00940000153118.db.a.a.b.a.a ENSGT01100000263575.B.u ENSGT01100000263559.A.f #25 ENSGT00940000156302.m.b ENSGT01100000263575.B.t.a.a.a.a.b ENSGT01100000263575.B.t.a.a.a.a.a ENSGT00940000156302.m.a.b ENSGT01100000263559.B #32 ENSGT01100000263506.a.e.b #14 ENSGT00950000183190.a.b.a.b ENSGT00420000029746.f ENSGT00950000183112.b.b ENSGT00940000158522 ENSGT01060000248645 ENSGT00390000012355.B.b ENSGT00390000005869.a ENSGT00730000111185 ENSGT00390000014273.b ENSGT00940000158423 ENSGT00530000063074.a ENSGT01030000234539.a.a.b.a.a ENSGT00390000013847 ENSGT00390000002799 Vaquita MODERN SPECIES PLEKHO1 (ENSPSNG00000001496) VPS45 (ENSPSNG00000001453) OTUD7B (ENSPSNG00000001389) MTMR11 (ENSPSNG00000001321) SF3B4 (ENSPSNG00000001286) SV2A (ENSPSNG00000001263) BOLA1 (ENSPSNG00000001237) H2AC21 (ENSPSNG00000001218) H2AC20 (ENSPSNG00000001208) H2BC21 (ENSPSNG00000001199) ENSPSNG00000001182 #25 ENSPSNG00000001168 ENSPSNG00000001160 ENSPSNG00000001148 ENSPSNG00000001132 ENSPSNG00000001122 #32 H3-7 (ENSPSNG00000001054) #25 H2BC18 (ENSPSNG00000001038) #14 ENSPSNG00000001015 ENSPSNG00000000971 HJV (ENSPSNG00000000911) TXNIP (ENSPSNG00000000878) POLR3GL (ENSPSNG00000000850) ANKRD34A (ENSPSNG00000000834) LIX1L (ENSPSNG00000000812) ENSPSNG00000000786 PEX11B (ENSPSNG00000000744) ITGA10 (ENSPSNG00000000636) ANKRD35 (ENSPSNG00000000537) PIAS3 (ENSPSNG00000000478) NUDT17 (ENSPSNG00000000422) Monodontidae ANCESTRAL SPECIES ENSGT00940000156893 ENSGT00950000182907.a.a ENSGT00530000063760.b ENSGT00550000075028.w.a ENSGT00940000159172 ENSGT00940000160276 ENSGT00870000136537 ENSGT00950000182940.b.a.b ENSGT00510000048165 ENSGT00940000153118.db.a.a.b.a.b ENSGT00940000153118.db.a.a.b.a.a ENSGT01100000263575.B.t.a.a.b ENSGT01100000263559.A.f #25 ENSGT01060000248528.b.jh.b ENSGT01100000263506.a.e.a.a.a.a.a #14 ENSGT01100000263559.B #32 ENSGT01100000263506.a.e.b #14 ENSGT00950000183190.a.b.a.b ENSGT00420000029746.f ENSGT00950000183112.b.b ENSGT00940000158522 ENSGT01060000248645 ENSGT00390000012355.B.b ENSGT00390000005869.a ENSGT00730000111185 ENSGT00390000014273.b ENSGT00940000158423 ENSGT00530000063074.a ENSGT01030000234539.a.a.b.a.a ENSGT00390000013847 ENSGT00390000002799 Narwhal MODERN SPECIES 304 CA14 (ENSMMNG00015000189) ANP32E (ENSMMNG00015000229) PLEKHO1 (ENSMMNG00015000265) ENSMMNG00015000303 OTUD7B (ENSMMNG00015000357) MTMR11 (ENSMMNG00015000420) SF3B4 (ENSMMNG00015000508) SV2A (ENSMMNG00015000538) BOLA1 (ENSMMNG00015000565) H2AC21 (ENSMMNG00015000574) H2AC20 (ENSMMNG00015000583) ENSMMNG00015000589 ENSMMNG00015000597 #25 ENSMMNG00015000609 #25 ENSMMNG00015000624 H3C13 (ENSMMNG00015000641) #32 H2BC18 (ENSMMNG00015000651) #14 ENSMMNG00015000669 ENSMMNG00015000699 HJV (ENSMMNG00015000764) TXNIP (ENSMMNG00015000791) ENSMMNG00015000840 ANKRD34A (ENSMMNG00015000874) LIX1L (ENSMMNG00015000890) RBM8A (ENSMMNG00015000918) PEX11B (ENSMMNG00015000972) ITGA10 (ENSMMNG00015001059) ANKRD35 (ENSMMNG00015001213) PIAS3 (ENSMMNG00015001315) NUDT17 (ENSMMNG00015001410) POLR3C (ENSMMNG00015001448) Sperm whale DUPLICATION Sperm whale MODERN SPECIES 15 PLEKHO1 (ENSPCTG00005010430) VPS45 (ENSPCTG00005010502) OTUD7B (ENSPCTG00005010704) MTMR11 (ENSPCTG00005010793) SF3B4 (ENSPCTG00005011142) SV2A (ENSPCTG00005011188) BOLA1 (ENSPCTG00005011392) H2AC21 (ENSPCTG00005011410) H2AC20 (ENSPCTG00005011425) ENSPCTG00005011442 ENSPCTG00005011455 #25 ENSPCTG00005011469 ENSPCTG00005011490 ENSPCTG00005011505 ENSPCTG00005011520 ENSPCTG00005011537 #32 ENSPCTG00005011561 ENSPCTG00005011661 HJV (ENSPCTG00005011809) TXNIP (ENSPCTG00005011915) POLR3GL (ENSPCTG00005012074) ENSPCTG00005012215 ENSPCTG00005012232 LIX1L (ENSPCTG00005012257) RBM8A (ENSPCTG00005012300) PEX11B (ENSPCTG00005012430) ITGA10 (ENSPCTG00005012521) POLR3C (ENSPCTG00005012859) ENSPCTG00005012939 ENSPCTG00005012998 PDZK1 (ENSPCTG00005013079) Sperm whale MODERN SPECIES 545 ENSPCTG00005014494 ENSPCTG00005014511 #32 H2BC18 (ENSPCTG00005014536) #14 Blue whale DUPLICATION Blue whale MODERN SPECIES PLEKHO1 (ENSBMSG00010013986) VPS45 (ENSBMSG00010013898) OTUD7B (ENSBMSG00010004006) MTMR11 (ENSBMSG00010003964) SF3B4 (ENSBMSG00010003943) SV2A (ENSBMSG00010003927) BOLA1 (ENSBMSG00010003920) H2AC21 (ENSBMSG00010003913) H2AC20 (ENSBMSG00010003906) H2BC21 (ENSBMSG00010003899) ENSBMSG00010003894 #32 ENSBMSG00010003888 ENSBMSG00010003885 ENSBMSG00010003880 ENSBMSG00010003874 ENSBMSG00010003866 #32 ENSBMSG00010003857 ENSBMSG00010003847 #32 H2BC18 (ENSBMSG00010003841) #14 ENSBMSG00010003827 HJV (ENSBMSG00010003805) TXNIP (ENSBMSG00010003790) POLR3GL (ENSBMSG00010003781) ANKRD34A (ENSBMSG00010003767) LIX1L (ENSBMSG00010003757) RBM8A (ENSBMSG00010003752) PEX11B (ENSBMSG00010003741) ITGA10 (ENSBMSG00010003688) NUDT17 (ENSBMSG00010003650) ENSBMSG00010003614 POLR3C (ENSBMSG00010003595) Blue whale MODERN SPECIES OTUD7B (ENSBMSG00010004006) MTMR11 (ENSBMSG00010003964) SF3B4 (ENSBMSG00010003943) SV2A (ENSBMSG00010003927) BOLA1 (ENSBMSG00010003920) H2AC21 (ENSBMSG00010003913) H2AC20 (ENSBMSG00010003906) H2BC21 (ENSBMSG00010003899) ENSBMSG00010003894 #32 ENSBMSG00010003888 ENSBMSG00010003885 ENSBMSG00010003880 ENSBMSG00010003874 ENSBMSG00010003866 #32 ENSBMSG00010003857 ENSBMSG00010003847 #32 H2BC18 (ENSBMSG00010003841) #14 ENSBMSG00010003827 HJV (ENSBMSG00010003805) TXNIP (ENSBMSG00010003790) POLR3GL (ENSBMSG00010003781) ANKRD34A (ENSBMSG00010003767) LIX1L (ENSBMSG00010003757) RBM8A (ENSBMSG00010003752) PEX11B (ENSBMSG00010003741) ITGA10 (ENSBMSG00010003688) NUDT17 (ENSBMSG00010003650) ENSBMSG00010003614 POLR3C (ENSBMSG00010003595) ENSBMSG00010003585 ENSBMSG00010003575 Blue whale MODERN SPECIES RBM8A (ENSBMSG00010003752) LIX1L (ENSBMSG00010003757) ANKRD34A (ENSBMSG00010003767) POLR3GL (ENSBMSG00010003781) TXNIP (ENSBMSG00010003790) HJV (ENSBMSG00010003805) ENSBMSG00010003827 H2BC18 (ENSBMSG00010003841) #14 ENSBMSG00010003847 #32 ENSBMSG00010003857 ENSBMSG00010003866 #32 ENSBMSG00010003874 ENSBMSG00010003880 ENSBMSG00010003885 ENSBMSG00010003888 ENSBMSG00010003894 #32 H2BC21 (ENSBMSG00010003899) H2AC20 (ENSBMSG00010003906) H2AC21 (ENSBMSG00010003913) BOLA1 (ENSBMSG00010003920) SV2A (ENSBMSG00010003927) SF3B4 (ENSBMSG00010003943) MTMR11 (ENSBMSG00010003964) OTUD7B (ENSBMSG00010004006) VPS45 (ENSBMSG00010013898) PLEKHO1 (ENSBMSG00010013986) ANP32E (ENSBMSG00010014047) CA14 (ENSBMSG00010014191) ENSBMSG00010014245 C1orf54 (ENSBMSG00010014318) CIART (ENSBMSG00010014384) Pecora ANCESTRAL SPECIES 32 ENSGT00940000155501.a.b ENSGT01100000263514.A.e.a.b.a.b.a.a.b ENSGT01100000263514.A.e.a.b.b ENSGT00940000160426 ENSGT01100000263506.a.e.a.a.a.b.a.a.b.a.b.b #14 ENSGT00990000203553.c.a.a.a.b ##28 ENSGT01100000263514.A.e.a.b.a.b.a.a.a.a ENSGT00940000153092.a.a.c.a.a ENSGT01100000263506.a.e.a.a.a.b.a.a.b.a.b.a.a.a #14 ENSGT00940000153118.db.b.a ENSGT01100000263474.a.b.b.e.a.a.a.b.g.a ##36 ENSGT00940000153125.E.c.a.b.b ENSGT00940000162950 ENSGT01100000263514.A.e.a.a ENSGT01060000248528.b.jh.b ENSGT01100000263559.B #32 ENSGT01100000263569.a.b.b ENSGT00940000164494 ENSGT01060000248528.a.b.a.a.a.b ENSGT01100000263514.A.e.a.b.a.b.a.a.a.b.a.a.a.a ENSGT00940000153125.E.c.b ENSGT01100000263506.a.e.a.a.a.b.a.a.a #14 ENSGT01060000248528.b.jh.a.b ENSGT00940000163036 ENSGT00940000162723 ENSGT00940000158017 ENSGT00940000161530 ENSGT00950000182802.B.a.a.b ENSGT00390000002062 ENSGT01090000259995.b.a.a.a.a.b.e ENSGT01090000259995.b.a.a.a.a.b.f Yarkand deer MODERN SPECIES 578 ENSCHYG00000014275 H2AC19 (ENSCHYG00000014327) ENSCHYG00000014354 #32 Percora_a ANCESTRAL SPECIES 12 ENSGT01100000263474.a.b.b.e.a.a.a.b.h ##36 ENSGT01100000263506.a.e.a.a.a.b.a.a.b.a.b.a.a.a.vc.b #14 ENSGT01100000263548.a.b.b ENSGT01100000263486.a.a ENSGT00990000203553.c.a.a.a.b ##28 ENSGT01100000263514.A.e.a.b.a.b.a.a.a.a ENSGT00940000153092.a.a.c.a.a ENSGT01100000263506.a.e.a.a.a.b.a.a.b.a.b.a.a.a.vc.a #14 ENSGT01100000263506.a.e.a.a.a.b.a.a.b.a.b.a.a.a.wc #14 ENSGT00940000153118.db.b.a ENSGT01100000263474.a.b.b.e.a.a.a.b.g.a ##36 ENSGT00940000153125.E.c.a.b.b ENSGT00940000162950 ENSGT01100000263514.A.e.a.a ENSGT01060000248528.b.jh.b ENSGT01100000263559.B #32 ENSGT01100000263569.a.b.b ENSGT00940000164494 ENSGT01060000248528.a.b.a.a.a.b ENSGT01100000263514.A.e.a.b.a.b.a.a.a.b.a.a.a.a ENSGT00940000153125.E.c.b ENSGT01100000263506.a.e.a.a.a.b.a.a.a #14 ENSGT01060000248528.b.jh.a.b ENSGT00940000163036 ENSGT00940000158017 ENSGT00940000161530 ENSGT00950000182802.B.a.a.b ENSGT00390000002062 ENSGT01090000259995.b.a.a.a.a.b.e ENSGT01090000259995.b.a.a.a.a.b.f ENSGT00940000162956.c Bovidae ANCESTRAL SPECIES 1 ENSGT00940000158423 ENSGT00390000014273.b ENSGT01050000244841.A.a.b ENSGT00730000111185 ENSGT00390000005869.a ENSGT00390000012355.B.b ENSGT01060000248645 ENSGT00940000158522 ENSGT00950000183112.b.b ENSGT00420000029746.f ENSGT00950000183190.a.b.a.b ENSGT01050000244808.A.b.b.a ENSGT01100000263506.a.e.b #14 ENSGT01100000263514.A.e.a.a ENSGT01060000248528.b.jh.b ENSGT01100000263559.B #32 ENSGT01100000263569.a.b.b ENSGT00940000164494 ENSGT01060000248528.a.b.a.a.a.b ENSGT01100000263474.a.b.a.d #36 ENSGT00940000156302 ENSGT01100000263559.A.f #25 ENSGT01100000263575.B.u ENSGT00940000153118.db.a.a.b.a.a ENSGT00940000153118.db.a.a.b.a.b ENSGT00510000048165 ENSGT00950000182940.b.a.b ENSGT00870000136537.i ENSGT00940000160276 ENSGT00940000159172 ENSGT00550000075028 Caprinae ANCESTRAL SPECIES 2 ENSGT00390000013847 ENSGT01030000234539.a.a.b.a.a ENSGT00530000063074.a ENSGT00940000158423 ENSGT00390000014273.b ENSGT00730000111185 ENSGT00390000005869.a ENSGT00390000012355.B.b ENSGT01060000248645 ENSGT00940000158522 ENSGT00950000183112.b.b ENSGT00420000029746.f ENSGT00950000183190.a.b.a.b ENSGT01050000244808.A.b.b.a ENSGT01100000263506.a.e.b #14 ENSGT01100000263559.B #32 ENSGT01100000263575.B.u ENSGT00940000153118.db.a.a.b.a.a ENSGT00940000153118.db.a.a.b.a.b ENSGT00510000048165 ENSGT00950000182940.b.a.b ENSGT00870000136537.i ENSGT00940000160276 ENSGT00940000159172 ENSGT00550000075028 ENSGT00530000063760.b ENSGT00950000182907.a.a ENSGT00940000156893 ENSGT00390000002049.c.a ENSGT00390000003103 ENSGT00390000018360 Rambouillet Sheep MODERN SPECIES POLR3GL (ENSOARG00020003936) TXNIP (ENSOARG00020003962) HJV (ENSOARG00020004031) ENSOARG00020006466 ENSOARG00020006487 ENSOARG00020006514 FCGR1A (ENSOARG00020006588) H2BC18 (ENSOARG00020006656) #14 H3-7 (ENSOARG00020006703) #25 ENSOARG00020006725 ENSOARG00020006745 #25 ENSOARG00020006772 ENSOARG00020006796 ENSOARG00020006810 #36 ENSOARG00020006832 ENSOARG00020006850 #32 HIST2H2BE (ENSOARG00020006877) HIST2H2AC (ENSOARG00020006891) HIST2H2AB (ENSOARG00020006921) BOLA1 (ENSOARG00020006951) SV2A (ENSOARG00020007009) SF3B4 (ENSOARG00020007183) MTMR11 (ENSOARG00020007236) OTUD7B (ENSOARG00020007348) VPS45 (ENSOARG00020007445) PLEKHO1 (ENSOARG00020007594) ENSOARG00020007614 CA14 (ENSOARG00020007644) APH1A (ENSOARG00020007706) C1orf54 (ENSOARG00020007824) CIART (ENSOARG00020007852) Goat MODERN SPECIES 22 ANKRD34A (ENSCHIG00000007942) POLR3GL (ENSCHIG00000008824) TXNIP (ENSCHIG00000017689) HJV (ENSCHIG00000010408) ENSCHIG00000023415 ENSCHIG00000017683 FCGR1A (ENSCHIG00000027141) H2BC18 (ENSCHIG00000007673) #14 ENSCHIG00000010234 #25 ENSCHIG00000009699 ENSCHIG00000013241 #25 ENSCHIG00000008044 ENSCHIG00000013722 ENSCHIG00000007823 ENSCHIG00000022263 ENSCHIG00000010054 #32 H2BC21 (ENSCHIG00000012955) H2AC20 (ENSCHIG00000010392) H2AC21 (ENSCHIG00000006209) BOLA1 (ENSCHIG00000023087) SV2A (ENSCHIG00000017231) ENSCHIG00000025663 MTMR11 (ENSCHIG00000021928) OTUD7B (ENSCHIG00000020643) VPS45 (ENSCHIG00000010595) PLEKHO1 (ENSCHIG00000022413) ANP32E (ENSCHIG00000002759) CA14 (ENSCHIG00000024032) APH1A (ENSCHIG00000015526) CIART (ENSCHIG00000001297) MRPS21 (ENSCHIG00000021516) Bovinae ANCESTRAL SPECIES 9 ENSGT00940000155501.a.a ENSGT00940000153092.a.b.f.n.b ENSGT01100000263506.a.e.a.a.a.b.a.a.b.a.a #14 ENSGT00940000163525 ENSGT01060000248528.b.kh.yb ENSGT01100000263517.b.d.m.a.a.b ENSGT00940000163082 ENSGT01100000263514.A.e.a.b.a.b.a.b ENSGT01100000263514.A.e.a.b.a.b.a.a.a.b.a.a.a.b ENSGT01100000263575.A ENSGT00940000153092.a.a.c.a.b.b.b ENSGT01100000263514.A.e.a.b.a.b.a.a.a.a ENSGT00990000203553.c.a.a.a.b ##28 ENSGT01060000248528.b.kh.xb.a.a ENSGT01060000248528.b.jh.b ENSGT01100000263559.B #32 ENSGT01100000263569.a.b.b ENSGT00940000164494 ENSGT01060000248528.a.b.a.a.a.b ENSGT01100000263514.A.e.a.b.a.b.a.a.b ENSGT00940000163269 ENSGT00940000160468 ENSGT00940000161926 ENSGT00940000162523 ENSGT00940000162346 ENSGT00940000160894 ENSGT01100000263474.a.a.c.a ##36 ENSGT01100000263474.a.a.c.b ##36 ENSGT01020000230360.c.b.a.b.b.d ##31 ENSGT00950000183108.a ENSGT00940000155112.B American bison MODERN SPECIES 3032 MTMR11 (ENSBBBG00000023347) ENSBBBG00000006102 SV2A (ENSBBBG00000023321) ENSBBBG00000023289 ENSBBBG00000023283 H2AC21 (ENSBBBG00000023276) H2AC20 (ENSBBBG00000023272) H2BC21 (ENSBBBG00000008849) ENSBBBG00000008681 #25 ENSBBBG00000023258 ENSBBBG00000023255 #14 ENSBBBG00000006078 #14 ENSBBBG00000023206 ENSBBBG00000023201 #25 H4C15 (ENSBBBG00000023197) H3C13 (ENSBBBG00000023194) #32 H2BC18 (ENSBBBG00000023192) #14 FCGR1A (ENSBBBG00000023183) ENSBBBG00000000326 ENSBBBG00000000337 Bos ANCESTRAL SPECIES 68 ENSGT01100000263559.B #32 ENSGT01100000263569.a.b.b ENSGT00940000164494 ENSGT01060000248528.a.b.a.a.a.b Bos_a ANCESTRAL SPECIES ENSGT01100000263559.B #32 Domestic yak MODERN SPECIES 22 ENSBGRG00000014985 LIX1L (ENSBGRG00000015160) ANKRD34A (ENSBGRG00000015222) POLR3GL (ENSBGRG00000015249) TXNIP (ENSBGRG00000015334) HJV (ENSBGRG00000015528) ENSBGRG00000015702 ENSBGRG00000015767 FCGR1A (ENSBGRG00000015945) H2BC18 (ENSBGRG00000016034) #14 ENSBGRG00000016114 #25 ENSBGRG00000016136 #25 ENSBGRG00000016148 ENSBGRG00000016162 #14 ENSBGRG00000016186 #14 ENSBGRG00000016242 #32 ENSBGRG00000016266 #25 H2BC21 (ENSBGRG00000016302) H2AC20 (ENSBGRG00000016331) H2AC21 (ENSBGRG00000016349) ENSBGRG00000016367 SV2A (ENSBGRG00000016418) ENSBGRG00000016698 MTMR11 (ENSBGRG00000016764) OTUD7B (ENSBGRG00000016856) VPS45 (ENSBGRG00000016926) PLEKHO1 (ENSBGRG00000017135) ENSBGRG00000017198 ENSBGRG00000017224 CA14 (ENSBGRG00000000220) APH1A (ENSBGRG00000000249) Bos_b ANCESTRAL SPECIES 63 ENSGT01100000263559.B #32 ENSGT01100000263569.a.b.b ENSGT00940000164494 ENSGT01060000248528.a.b.a.a.a.b Cow DUPLICATION Cow MODERN SPECIES 51 ENSBTAG00000054658 ENSBTAG00000050465 ENSBTAG00000051309 ENSBTAG00000050095 #32 ENSBTAG00000053942 ENSBTAG00000053309 ENSBTAG00000053718 ENSBTAG00000051272 #25 ENSBTAG00000050054 ENSBTAG00000051460 ENSBTAG00000050880 ENSBTAG00000054782 #32 ENSBTAG00000052212 ENSBTAG00000051398 ENSBTAG00000049559 ENSBTAG00000052507 ENSBTAG00000052656 ENSBTAG00000048564 ENSBTAG00000053021 ENSBTAG00000054906 #32 ENSBTAG00000051109 Cow MODERN SPECIES 51 ENSBTAG00000054658 ENSBTAG00000050465 ENSBTAG00000051309 ENSBTAG00000050095 #32 ENSBTAG00000053942 ENSBTAG00000053309 ENSBTAG00000053718 ENSBTAG00000051272 #25 ENSBTAG00000050054 ENSBTAG00000051460 ENSBTAG00000050880 ENSBTAG00000054782 #32 ENSBTAG00000052212 ENSBTAG00000051398 ENSBTAG00000049559 ENSBTAG00000052507 ENSBTAG00000052656 ENSBTAG00000048564 ENSBTAG00000053021 Cow MODERN SPECIES 51 ENSBTAG00000053942 ENSBTAG00000053309 ENSBTAG00000053718 ENSBTAG00000051272 #25 ENSBTAG00000050054 ENSBTAG00000051460 ENSBTAG00000050880 ENSBTAG00000054782 #32 ENSBTAG00000052212 ENSBTAG00000051398 ENSBTAG00000049559 ENSBTAG00000052507 ENSBTAG00000052656 ENSBTAG00000048564 ENSBTAG00000053021 ENSBTAG00000054906 #32 ENSBTAG00000051109 Camelidae ANCESTRAL SPECIES 6 ENSGT00390000018360 ENSGT00390000003103 ENSGT00390000002049.c.a ENSGT00940000156893 ENSGT00950000182907.a.a ENSGT00530000063760.b ENSGT00550000075028 ENSGT00940000159172 ENSGT00940000160276 ENSGT00870000136537 ENSGT00950000182940.b.a.b ENSGT00510000048165 ENSGT00940000153118.db.a.a.b.a.b ENSGT00940000153118.db.a.a.b.a.a ENSGT01100000263506.a.e.a.a.a.a.a.b #14 ENSGT01100000263559.B #32 ENSGT01100000263559.A.f #25 ENSGT01100000263506.a.e.b #14 ENSGT01050000244808.A.b.b.a ENSGT00950000183190.a.b.a.b ENSGT00420000029746.f ENSGT00950000183112.b.b ENSGT00940000158522 ENSGT01060000248645 ENSGT00390000012355.B.b ENSGT00390000005869.a ENSGT00730000111185 ENSGT00910000145379 ENSGT00940000158423 ENSGT00530000063074.a ENSGT01030000234539.a.a.b.a.a Arabian camel DUPLICATION Arabian camel MODERN SPECIES 13 ENSCDRG00005016574 APH1A (ENSCDRG00005016465) CA14 (ENSCDRG00005016386) ANP32E (ENSCDRG00005016234) PLEKHO1 (ENSCDRG00005016174) VPS45 (ENSCDRG00005016029) OTUD7B (ENSCDRG00005015982) MTMR11 (ENSCDRG00005015753) SF3B4 (ENSCDRG00005015698) SV2A (ENSCDRG00005015609) BOLA1 (ENSCDRG00005015588) H2AC21 (ENSCDRG00005015577) H2AC20 (ENSCDRG00005015569) ENSCDRG00005015337 ENSCDRG00005015322 #14 ENSCDRG00005015313 #32 ENSCDRG00005015303 ENSCDRG00005015297 #32 H2BC18 (ENSCDRG00005015267) #14 FCGR1A (ENSCDRG00005015157) ENSCDRG00005015110 ENSCDRG00005015029 HJV (ENSCDRG00005014941) TXNIP (ENSCDRG00005014863) POLR3GL (ENSCDRG00005014814) ANKRD34A (ENSCDRG00005014782) LIX1L (ENSCDRG00005014710) RBM8A (ENSCDRG00005014616) ENSCDRG00005014575 ITGA10 (ENSCDRG00005014118) ANKRD35 (ENSCDRG00005013927) Arabian camel MODERN SPECIES 13 CA14 (ENSCDRG00005016386) ANP32E (ENSCDRG00005016234) PLEKHO1 (ENSCDRG00005016174) VPS45 (ENSCDRG00005016029) OTUD7B (ENSCDRG00005015982) MTMR11 (ENSCDRG00005015753) SF3B4 (ENSCDRG00005015698) SV2A (ENSCDRG00005015609) BOLA1 (ENSCDRG00005015588) H2AC21 (ENSCDRG00005015577) H2AC20 (ENSCDRG00005015569) ENSCDRG00005015337 ENSCDRG00005015322 #14 ENSCDRG00005015313 #32 ENSCDRG00005015303 ENSCDRG00005015297 #32 H2BC18 (ENSCDRG00005015267) #14 FCGR1A (ENSCDRG00005015157) ENSCDRG00005015110 ENSCDRG00005015029 HJV (ENSCDRG00005014941) TXNIP (ENSCDRG00005014863) POLR3GL (ENSCDRG00005014814) ANKRD34A (ENSCDRG00005014782) LIX1L (ENSCDRG00005014710) RBM8A (ENSCDRG00005014616) ENSCDRG00005014575 ITGA10 (ENSCDRG00005014118) ANKRD35 (ENSCDRG00005013927) PIAS3 (ENSCDRG00005013833) ENSCDRG00005013752 Suina ANCESTRAL SPECIES 8 ENSGT01100000263506.a.e.a.a.a.a.b.a #14 ENSGT01100000263474.a.b.b.e.a.a.a.a ##36 ENSGT00940000155501.a.a ENSGT00940000153092.a.b.f ENSGT01100000263506.a.f.b #14 ENSGT00940000153092.a.a.d ENSGT00940000163525 ENSGT01100000263474.a.b.a.d #36 ENSGT01060000248528.b.kh.yb ENSGT01100000263517.b.d.m.a.a.b ENSGT00940000163082 ENSGT01100000263559.A.f #25 ENSGT00940000156302 ENSGT01100000263575.A ENSGT00940000153118.db.b ENSGT01100000263559.B #32 ENSGT01100000263575.B.u ENSGT00940000153118.db.a.a.b.a.a ENSGT00940000153118.db.a.a.b.a.b ENSGT00510000048165 ENSGT00950000182940.b.a.b ENSGT00870000136537 ENSGT00940000160276 ENSGT00940000159172 ENSGT00550000075028 ENSGT00530000063760.b ENSGT00950000182907.a.a ENSGT00940000156893 ENSGT00390000002049.c.a ENSGT00390000003103 ENSGT00390000018360 Pig MODERN SPECIES 12 RBM8A (ENSSSCG00000028509) LIX1L (ENSSSCG00000026502) ANKRD34A (ENSSSCG00000037823) ENSSSCG00000006682 TXNIP (ENSSSCG00000031262) HJV (ENSSSCG00000035429) ENSSSCG00000006679 FCGR1A (ENSSSCG00000006678) H2BC18 (ENSSSCG00000062160) #14 ENSSSCG00000059426 H3C14 (ENSSSCG00000063270) #25 ENSSSCG00000057512 ENSSSCG00000055629 H2BC21 (ENSSSCG00000060759) ENSSSCG00000057447 ENSSSCG00000053902 #32 ENSSSCG00000047083 H2AC20 (ENSSSCG00000034598) H2AC21 (ENSSSCG00000063420) BOLA1 (ENSSSCG00000006667) SV2A (ENSSSCG00000006666) SF3B4 (ENSSSCG00000006665) MTMR11 (ENSSSCG00000006664) OTUD7B (ENSSSCG00000006663) VPS45 (ENSSSCG00000006661) PLEKHO1 (ENSSSCG00000022784) ANP32E (ENSSSCG00000035209) CA14 (ENSSSCG00000027875) APH1A (ENSSSCG00000028297) C1orf54 (ENSSSCG00000045950) CIART (ENSSSCG00000038374) Chacoan peccary MODERN SPECIES 29 PEX11B (ENSCWAG00000011193) ENSCWAG00000011122 RBM8A (ENSCWAG00000011078) LIX1L (ENSCWAG00000011045) ANKRD34A (ENSCWAG00000011022) ENSCWAG00000010984 TXNIP (ENSCWAG00000010902) HJV (ENSCWAG00000010824) ENSCWAG00000010758 ENSCWAG00000010702 ENSCWAG00000010635 H2BC18 (ENSCWAG00000010598) #14 ENSCWAG00000010582 ENSCWAG00000010575 #36 ENSCWAG00000010555 H3C15 (ENSCWAG00000010535) #32 H2BC21 (ENSCWAG00000010520) H2AC20 (ENSCWAG00000010494) H2AC21 (ENSCWAG00000010470) BOLA1 (ENSCWAG00000010457) SV2A (ENSCWAG00000010325) SF3B4 (ENSCWAG00000010291) MTMR11 (ENSCWAG00000009987) OTUD7B (ENSCWAG00000009903) ENSCWAG00000009861 VPS45 (ENSCWAG00000009712) PLEKHO1 (ENSCWAG00000009593) ANP32E (ENSCWAG00000009540) CA14 (ENSCWAG00000009438) APH1A (ENSCWAG00000009346) C1orf54 (ENSCWAG00000009306) Laurasiatheria_b ANCESTRAL SPECIES 7 ENSGT00390000002062 ENSGT00950000182802.B.a.a.b ENSGT00940000161530 ENSGT01060000248528.b.kh.xb.a.b ENSGT01100000263517.b.d.m.a.a.b ENSGT00940000163082 ENSGT01100000263514.A.e.a.b.a.b.a.a.a.b.a.a.a.b ENSGT00940000160426 ENSGT01100000263506.a.e.a.a.a.b.a.a.b.a.b.b #14 ENSGT01100000263506.a.e.a.a.a.b.a.a.b.a.b.a.a.b #14 ENSGT00940000163525 ENSGT01060000248528.b.kh.yb.c.a ENSGT01100000263559.A.f #25 ENSGT01100000263575.B.u ENSGT00940000156302 ENSGT01100000263559.B #32 ENSGT01060000248528.b.kh.yb.d ENSGT01100000263506.a.e.a.a.a.b.a.a.b.a.b.a.a.a #14 ENSGT00940000153092.a.b.f ENSGT00940000155501.a.a ENSGT01100000263474.a.b.b.e.a.a.a.b ##36 ENSGT00940000162950 ENSGT01100000263514.A.e.a.b.a.b.a.a.a.a ENSGT01100000263514.A.e.a.b.a.b.a.b ENSGT00940000163269 ENSGT00940000160468 ENSGT00940000161926 ENSGT00940000162523 ENSGT00940000162346 ENSGT00940000160894 ENSGT01100000263474.a.a.c.a ##36 Laurasiatheria_c ANCESTRAL SPECIES ENSGT00730000111185 ENSGT00390000005869.a ENSGT00390000012355.B.b ENSGT01060000248645 ENSGT00940000158522 ENSGT00950000183112.b.b ENSGT00420000029746.f ENSGT00950000183190.a.b.a.b ENSGT01050000244808.A.b.b.a ENSGT01100000263506.a.e.b #14 ENSGT01100000263559.A.f #25 ENSGT00940000153125.D.a.a ENSGT01100000263575.B.u ENSGT00940000156302 ENSGT01100000263575.A ENSGT01100000263559.B #32 ENSGT01100000263506.a.e.a.b #14 ENSGT00940000153118.db.a.a.b.a.a ENSGT00940000153118.db.a.a.b.a.b ENSGT00510000048165 ENSGT00950000182940.b.a.b ENSGT00870000136537 ENSGT00940000160276 ENSGT00940000159172 ENSGT00550000075028 ENSGT00530000063760.b ENSGT00950000182907.a.a ENSGT00940000156893 ENSGT00390000002049.c.a ENSGT00390000003103 ENSGT00390000018360 Chiroptera ANCESTRAL SPECIES 20 ENSGT00390000003103 ENSGT00390000002049.c.a ENSGT00940000156893 ENSGT00950000182907.a.a ENSGT00530000063760.b ENSGT00550000075028 ENSGT00940000159172 ENSGT00940000160276 ENSGT00870000136537 ENSGT00950000182940.b.a.b ENSGT00510000048165 ENSGT00940000153118.db.a.a.b.a.b ENSGT00940000153118.db.a.a.b.a.a ENSGT01100000263575.A ENSGT00940000156302 ENSGT01100000263559.B #32 ENSGT00940000160426 ENSGT01100000263506.a.e.a.a.a.b.a.a.b.a.b.b #14 ENSGT00940000163525 ENSGT01060000248528.b.kh.yb.d ENSGT00940000155501.a.b ENSGT01100000263514.A.e.a.b.a.b.a.a.a.b.a.a.a.b ENSGT00940000153125.D.a.a ENSGT01100000263575.B.u ENSGT00940000153125.E.c.a.a ENSGT01100000263506.a.e.a.a.a.b.a.a.b.a.b.a.a.a #14 ENSGT00940000153125.E.c.a.b.b ENSGT00940000162950 ENSGT01100000263514.A.e.a.b.a.b.a.a.a.a ENSGT01060000248528.b.kh.yb.c.a ENSGT01100000263514.A.e.a.b.a.b.a.b Megabat MODERN SPECIES 4971 ENSPVAG00000024247 ENSPVAG00000012140 #32 ENSPVAG00000024083 Equus ANCESTRAL SPECIES 3 ENSGT01100000263506.a.e.b #14 ENSGT01100000263559.A.f #25 ENSGT00940000153092.a.b.e.a.a ENSGT01100000263575.B.u ENSGT00940000156302 ENSGT01100000263575.A ENSGT00940000163036.g.a.a.a ENSGT01060000248528.b.jh.a.b ENSGT01100000263506.a.e.a.a.a.b.a.a.a #14 ENSGT00940000160426 ENSGT01100000263567.a.a #35 ENSGT01060000248528.b.jh.b ENSGT01060000248528.b.kh.yb.d ENSGT00940000155501.a.b ENSGT01100000263514.A.e.a.a ENSGT01100000263559.B #32 ENSGT00940000153118.db.a.a.b.a.a ENSGT00940000153118.db.a.a.b.a.b ENSGT00510000048165 ENSGT00950000182940.b.a.b ENSGT00870000136537 ENSGT00940000160276 ENSGT00940000159172 ENSGT00550000075028 ENSGT00530000063760.b ENSGT00950000182907.a.a ENSGT00940000156893 ENSGT00390000002049.c.a ENSGT00390000003103 ENSGT00390000018360 ENSGT00500000045038 Donkey DUPLICATION Donkey MODERN SPECIES 17 ANP32E (ENSEASG00005038731) PLEKHO1 (ENSEASG00005001526) VPS45 (ENSEASG00005001512) ENSEASG00005027301 OTUD7B (ENSEASG00005001503) MTMR11 (ENSEASG00005001485) SF3B4 (ENSEASG00005001477) SV2A (ENSEASG00005001472) ENSEASG00005001466 H2AC21 (ENSEASG00005032093) ENSEASG00005025005 ENSEASG00005026834 #32 ENSEASG00005033525 ENSEASG00005027933 ENSEASG00005036493 ENSEASG00005037866 #32 ENSEASG00005002125 ENSEASG00005002130 ENSEASG00005037767 ENSEASG00005025106 TXNIP (ENSEASG00005007477) POLR3GL (ENSEASG00005007466) ANKRD34A (ENSEASG00005007463) LIX1L (ENSEASG00005007459) RBM8A (ENSEASG00005007455) ENSEASG00005007451 PEX11B (ENSEASG00005032013) ITGA10 (ENSEASG00005007436) ANKRD35 (ENSEASG00005007430) PIAS3 (ENSEASG00005007424) NUDT17 (ENSEASG00005007420) Donkey MODERN SPECIES 17 PEX11B (ENSEASG00005032013) ENSEASG00005007451 RBM8A (ENSEASG00005007455) LIX1L (ENSEASG00005007459) ANKRD34A (ENSEASG00005007463) POLR3GL (ENSEASG00005007466) TXNIP (ENSEASG00005007477) ENSEASG00005025106 ENSEASG00005037767 ENSEASG00005002130 ENSEASG00005002125 ENSEASG00005037866 #32 ENSEASG00005036493 ENSEASG00005027933 ENSEASG00005033525 ENSEASG00005026834 #32 ENSEASG00005025005 H2AC21 (ENSEASG00005032093) ENSEASG00005001466 SV2A (ENSEASG00005001472) SF3B4 (ENSEASG00005001477) MTMR11 (ENSEASG00005001485) OTUD7B (ENSEASG00005001503) ENSEASG00005027301 VPS45 (ENSEASG00005001512) PLEKHO1 (ENSEASG00005001526) ANP32E (ENSEASG00005038731) CA14 (ENSEASG00005001536) APH1A (ENSEASG00005035187) C1orf54 (ENSEASG00005025776) CIART (ENSEASG00005001554) Carnivora ANCESTRAL SPECIES 75 ENSGT01060000248528.b.kh.xb.b.b ENSGT01100000263559.B #32 Caniformia ANCESTRAL SPECIES 31 ENSGT00940000156893 ENSGT00950000182907.a.a ENSGT00530000063760.b ENSGT00550000075028 ENSGT00940000159172 ENSGT00940000160276 ENSGT00870000136537 ENSGT00950000182940.b.a.b ENSGT00510000048165 ENSGT00940000153118.db.a.a.b.a.b ENSGT00940000153118.db.a.a.b.a.a ENSGT01100000263575.B.u ENSGT01060000248528.b.kh.yb.c.a ENSGT01100000263559.A.f #25 ENSGT01060000248528.b.jh.a.b ENSGT01100000263559.B #32 ENSGT01100000263506.a.e.b #14 ENSGT01050000244808.A.b.b.a ENSGT00950000183190.a.b.a.b ENSGT00420000029746.f ENSGT00950000183112.b.b ENSGT00940000158522 ENSGT01060000248645 ENSGT00390000012355.B.b ENSGT00390000005869.a ENSGT00730000111185 ENSGT01050000244841.A.a.b ENSGT00390000014273.b ENSGT00940000158423 ENSGT00530000063074.a ENSGT01030000234539.a.a.b.a.a Caniformia_b ANCESTRAL SPECIES 35 ENSGT00950000182907.a.a ENSGT00530000063760.b ENSGT00550000075028 ENSGT00940000159172 ENSGT00940000160276 ENSGT00870000136537 ENSGT00950000182940.b.a.b ENSGT00510000048165 ENSGT00940000153118.db.a.a.b.a.b ENSGT00940000153118.db.a.a.b.a.a ENSGT01100000263575.B.u ENSGT01100000263559.A.f #25 ENSGT00940000156302 ENSGT01100000263506.a.e.a.a.a.a.b.a #14 ENSGT01060000248528.b.jh.a.b ENSGT01100000263559.B #32 ENSGT01100000263506.a.e.b #14 ENSGT01050000244808.A.b.b.a ENSGT00950000183190.a.b.a.b ENSGT00420000029746.f ENSGT00950000183112.b.b ENSGT00940000158522 ENSGT01060000248645 ENSGT00390000012355.B.b ENSGT00390000005869.a ENSGT00730000111185 ENSGT01050000244841.A.a.b ENSGT00390000014273.b ENSGT00940000158423 ENSGT00530000063074.a ENSGT01030000234539.a.a.b.a.a Mustelinae ANCESTRAL SPECIES 81 ENSGT00500000045038 ENSGT00390000018360 ENSGT00390000003103 ENSGT00390000002049.c.a ENSGT00940000156893 ENSGT00950000182907.a.a ENSGT00530000063760.b ENSGT00550000075028 ENSGT00940000159172 ENSGT00940000160276 ENSGT00870000136537 ENSGT00950000182940.b.a.b ENSGT00510000048165 ENSGT00940000153118.db.a.a.b.a.b ENSGT00940000153118.db.a.a.b.a.a ENSGT01100000263559.B #32 ENSGT01100000263506.a.e.b #14 ENSGT01050000244808.A.b.b.a ENSGT00950000183190.a.b.a.b ENSGT00420000029746.f American mink MODERN SPECIES 530 OTUD7B (ENSNVIG00000003037) MTMR11 (ENSNVIG00000003067) SF3B4 (ENSNVIG00000003168) SV2A (ENSNVIG00000003188) BOLA1 (ENSNVIG00000003246) H2AC21 (ENSNVIG00000003251) H2AC20 (ENSNVIG00000003252) ENSNVIG00000003258 ENSNVIG00000003275 #25 ENSNVIG00000003279 ENSNVIG00000003286 ENSNVIG00000003349 ENSNVIG00000003397 ENSNVIG00000003399 #25 H4 (ENSNVIG00000003408) ENSNVIG00000003413 #32 H2BC18 (ENSNVIG00000003417) #14 ENSNVIG00000003430 ENSNVIG00000003436 ENSNVIG00000003455 ENSNVIG00000003483 Ursidae ANCESTRAL SPECIES ENSGT00390000002049.c.a ENSGT00940000156893 ENSGT00950000182907.a.a.a.b ENSGT00530000063760.b ENSGT00550000075028 ENSGT00940000159172 ENSGT00940000160276 ENSGT00870000136537 ENSGT00950000182940.b.a.b ENSGT00510000048165 ENSGT00940000153118.db.a.a.b.a.b ENSGT00940000153118.db.a.a.b.a.a ENSGT01100000263575.B.u ENSGT01100000263575.A ENSGT01060000248528.b.jh.a.b ENSGT01100000263559.B #32 ENSGT01100000263506.a.e.b #14 ENSGT01050000244808.A.b.b.a ENSGT00950000183190.a.b.a.b ENSGT00420000029746.f ENSGT00950000183112.b.b ENSGT00940000158522 ENSGT01100000263883 ENSGT00390000012355.B.b ENSGT00390000005869.a ENSGT00730000111185.p ENSGT01050000244841.A.a.b ENSGT00390000014273.b ENSGT00940000158423 ENSGT00530000063074.a ENSGT01030000234539.a.a.b.a.a Ursus ANCESTRAL SPECIES 290 ENSGT01060000248528.b.jh.a.b ENSGT01100000263559.B #32 ENSGT01100000263506.a.e.b #14 ENSGT01050000244808.A.b.b.a ENSGT00950000183190.a.b.a.b ENSGT00420000029746.f American black bear MODERN SPECIES 234 PLEKHO1 (ENSUAMG00000022464) VPS45 (ENSUAMG00000022465) OTUD7B (ENSUAMG00000022466) MTMR11 (ENSUAMG00000022467) SF3B4 (ENSUAMG00000022468) SV2A (ENSUAMG00000022469) BOLA1 (ENSUAMG00000022470) ENSUAMG00000022471 H2AC21 (ENSUAMG00000022472) ENSUAMG00000022473 ENSUAMG00000022483 ENSUAMG00000022505 ENSUAMG00000022508 ENSUAMG00000022509 ENSUAMG00000022510 H3C13 (ENSUAMG00000022511) #32 H2BC18 (ENSUAMG00000022512) #14 FCGR1A (ENSUAMG00000022513) ENSUAMG00000022514 ENSUAMG00000022516 Giant Panda MODERN SPECIES 11 C1orf54 (ENSAMEG00000001725) APH1A (ENSAMEG00000001729) CA14 (ENSAMEG00000001775) ANP32E (ENSAMEG00000001813) PLEKHO1 (ENSAMEG00000001832) VPS45 (ENSAMEG00000001841) OTUD7B (ENSAMEG00000010043) MTMR11 (ENSAMEG00000010059) SF3B4 (ENSAMEG00000010073) SV2A (ENSAMEG00000010085) BOLA1 (ENSAMEG00000018625) H2AC21 (ENSAMEG00000030369) H2AC20 (ENSAMEG00000030590) H2BC21 (ENSAMEG00000024998) ENSAMEG00000026973 H3C14 (ENSAMEG00000026075) #32 ENSAMEG00000031520 #14 ENSAMEG00000007093 ENSAMEG00000029936 ENSAMEG00000006949 ENSAMEG00000026609 TXNIP (ENSAMEG00000017638) ENSAMEG00000017634 ANKRD34A (ENSAMEG00000017633) LIX1L (ENSAMEG00000017628) RBM8A (ENSAMEG00000017623) ENSAMEG00000025842 PEX11B (ENSAMEG00000031122) PEX11B (ENSAMEG00000026333) ITGA10 (ENSAMEG00000017585) ANKRD35 (ENSAMEG00000027203) Felidae ANCESTRAL SPECIES 10 ENSGT00940000156302 ENSGT01100000263575.A ENSGT00940000153092.a.a.c.a.a ENSGT01100000263514.A.e.a.b.a.b.a.a.a.b.a.a.a.a ENSGT01100000263506.a.e.a.a.a.b.a.a.b.a.b.a.a.a #14 ENSGT00940000153092.a.b.f ENSGT00940000155501.a.a ENSGT01100000263474.a.b.b.e.a.a.b ##36 ENSGT01100000263506.a.e.a.a.a.b.a.a.b.a.a #14 ENSGT00940000153118.db.a.b ENSGT01100000263506.a.e.a.a.a.a.b.b #14 ENSGT01060000248528.b.kh.yb.d ENSGT00940000155501.a.b.e.b ENSGT01100000263567.a.b ##35 ENSGT01060000248528.b.kh.xb.b.b ENSGT01100000263559.B #32 ENSGT01100000263506.a.e.b #14 ENSGT01050000244808.A.b.b.a ENSGT00390000016972.a.b.b ENSGT00950000183190.a.b.a.b ENSGT00420000029746.f ENSGT00950000183112.b.b ENSGT00940000158522 ENSGT01060000248645 ENSGT00390000012355.B.b ENSGT00390000005869.a ENSGT00730000111185 ENSGT00910000145379 ENSGT00390000014273.b ENSGT00940000158423 ENSGT00530000063074.a Panthera ANCESTRAL SPECIES 30 ENSGT00940000161926 ENSGT00940000160468 ENSGT00940000163269 ENSGT01100000263514.A.e.a.b.a.b.a.a.a.b.a.a.a.a ENSGT01100000263567.a.b ##35 ENSGT00940000155501.a.b.e.b ENSGT01060000248528.b.kh.yb.d ENSGT01100000263506.a.e.a.a.a.b.a.a.b.a.b.a.a.a #14 ENSGT01100000263474.a.b.b.e.a.a.b ##36 ENSGT00940000155501.a.a ENSGT00940000153092.a.b.f ENSGT01100000263504.a.b.b.b.a.a ENSGT00940000153092.a.a.c.a.a ENSGT01100000263575.A ENSGT00940000156302 ENSGT01100000263559.B #32 ENSGT00940000160426 ENSGT01100000263514.A.e.a.b.a.b.a.a.a.b.a.a.a.b ENSGT00940000163082 ENSGT01100000263517.b.d.m.a.a.b ENSGT01060000248528.b.kh.yb.c.a ENSGT00940000163525 ENSGT01100000263506.a.e.a.a.a.b.a.a.b.a.a #14 ENSGT00990000203553.c.b #28 ENSGT00940000163835 ENSGT00940000164101.a ENSGT00940000161530 ENSGT00950000182802.B.a.a.b.d ENSGT00390000002062 ENSGT00940000162956 ENSGT01030000234553.b.b.c.b.b.a Panthera_a ANCESTRAL SPECIES 79 ENSGT01100000263504.a.b.b.b.a.a ENSGT00940000153092.a.a.c.a.a ENSGT01100000263575.A ENSGT00940000156302 ENSGT01100000263559.B #32 ENSGT01060000248528.b.jh.b ENSGT01100000263559.A.f #25 ENSGT01100000263506.a.e.b #14 ENSGT01050000244808.A.b.b.a ENSGT00390000016972.a.b.b ENSGT00950000183190.a.b.a.b ENSGT00420000029746.f leopard MODERN SPECIES 149 OTUD7B (ENSPPRG00000005622) MTMR11 (ENSPPRG00000007153) SF3B4 (ENSPPRG00000007384) SV2A (ENSPPRG00000007971) BOLA1 (ENSPPRG00000016802) H2AC21 (ENSPPRG00000016850) ENSPPRG00000016865 ENSPPRG00000016879 H2AC20 (ENSPPRG00000016889) H2BC21 (ENSPPRG00000016907) H2AC19 (ENSPPRG00000016923) ENSPPRG00000017082 ENSPPRG00000017282 ENSPPRG00000017308 ENSPPRG00000017324 H3C13 (ENSPPRG00000017364) #32 H2BC18 (ENSPPRG00000011510) #14 FCGR1A (ENSPPRG00000012934) ENSPPRG00000013069 ENSPPRG00000013639 lion MODERN SPECIES 404 ENSPLOG00000020331 H2AC19 (ENSPLOG00000020345) ENSPLOG00000020358 #32 Marsupialia ANCESTRAL SPECIES 22 ENSGT00530000063599.A ENSGT00940000162162.b.a.b ENSGT00940000163105 ENSGT00940000158772 ENSGT00940000157016 ENSGT00390000007779 ENSGT00940000153882.a.b.b.b ENSGT00530000063753.B ENSGT00940000161686 ENSGT00940000161530 ENSGT00940000158017 ENSGT00940000161385 ENSGT01100000263575.A ENSGT01100000263575.B ENSGT00940000156302 ENSGT01100000263559.B #32 ENSGT01060000248528.b.kh ENSGT01100000263559.A.f #25 ENSGT00940000153092.a.a.b Marsupialia_b ANCESTRAL SPECIES 59 ENSGT00940000153092.a.a.b ENSGT01100000263559.A.f #25 ENSGT01100000263575.B ENSGT00940000156302 ENSGT01100000263559.B #32 ENSGT00940000163082 Diprotodontia ANCESTRAL SPECIES 119 ENSGT00940000153092.a.a.b ENSGT01100000263559.A.f #25 ENSGT01100000263575.B ENSGT00940000156302 ENSGT01100000263559.B #32 ENSGT00940000163082 Wallaby DUPLICATION Wallaby MODERN SPECIES 13852 ENSMEUG00000000895 ENSMEUG00000000893 #32 ENSMEUG00000000889 ENSMEUG00000000886 ENSMEUG00000000879 ENSMEUG00000000873 #14 Wallaby MODERN SPECIES 12404 ENSMEUG00000005952 #32 ENSMEUG00000005947 #25 Diprotodontia_a ANCESTRAL SPECIES 37 ENSGT00940000162162.b.a.b ENSGT00940000163105 ENSGT00940000158772 ENSGT00940000157016 ENSGT00390000007779 ENSGT00940000153882.a.b.b.b ENSGT00530000063753.B ENSGT00940000161686 ENSGT00940000153104.e.b.a.a.a.a ENSGT00940000161530 ENSGT00940000158017 ENSGT00940000153118.db.b ENSGT01100000263504.a.b.b.b.a.a ENSGT00940000155501.b.f.a ENSGT00940000156302 ENSGT01100000263559.B #32 ENSGT01060000248528.b.kh ENSGT00940000161385 ENSGT01100000263575.A ENSGT00940000155501.b.e.b ENSGT01100000263517.b.d.m.a.a.b ENSGT00940000160426.b ENSGT01100000263567.a.a #35 ENSGT01100000263474.a.b.b ##36 ENSGT01100000263504.a.b.b.b.b ENSGT00940000155501.b.f.b ENSGT00940000160426.a.a.b ENSGT01100000263575.B.e.a ENSGT00940000155501.b.e.a koala DUPLICATION koala MODERN SPECIES 167 ENSPCIG00000015334 TRIM11 (ENSPCIG00000015276) ENSPCIG00000037166 ENSPCIG00000015238 #35 ENSPCIG00000031167 ##36 ENSPCIG00000033149 ENSPCIG00000031273 ENSPCIG00000032592 ENSPCIG00000031487 ENSPCIG00000031433 ENSPCIG00000036717 ENSPCIG00000034762 #10 ENSPCIG00000014676 ENSPCIG00000031126 ENSPCIG00000031257 #32 ENSPCIG00000034498 #32 HFE (ENSPCIG00000008663) ENSPCIG00000008666 ENSPCIG00000032287 ENSPCIG00000031525 ENSPCIG00000035745 ENSPCIG00000024809 ENSPCIG00000033159 ENSPCIG00000024792 ENSPCIG00000035138 #14 ENSPCIG00000030835 BTN1A1 (ENSPCIG00000024787) ENSPCIG00000036834 ENSPCIG00000027495 PIK3R5 (ENSPCIG00000000380) ENSPCIG00000000324 koala MODERN SPECIES 167 ZNF496 (ENSPCIG00000015280) ENSPCIG00000015334 TRIM11 (ENSPCIG00000015276) ENSPCIG00000037166 ENSPCIG00000015238 #35 ENSPCIG00000031167 ##36 ENSPCIG00000033149 ENSPCIG00000031273 ENSPCIG00000032592 ENSPCIG00000031487 ENSPCIG00000031433 ENSPCIG00000036717 ENSPCIG00000034762 #10 ENSPCIG00000014676 ENSPCIG00000031126 ENSPCIG00000031257 #32 ENSPCIG00000034498 #32 HFE (ENSPCIG00000008663) ENSPCIG00000008666 ENSPCIG00000032287 ENSPCIG00000031525 ENSPCIG00000035745 ENSPCIG00000024809 ENSPCIG00000033159 ENSPCIG00000024792 ENSPCIG00000035138 #14 ENSPCIG00000030835 BTN1A1 (ENSPCIG00000024787) ENSPCIG00000036834 ENSPCIG00000027495 PIK3R5 (ENSPCIG00000000380) Common wonbat DUPLICATION Common wonbat MODERN SPECIES 746 ENSVURG00010005173 #35 ENSVURG00010005043 ENSVURG00010005034 #14 ENSVURG00010005028 #25 ENSVURG00010004997 #35 ENSVURG00010004986 #32 ENSVURG00010004971 ENSVURG00010004956 ENSVURG00010004911 ENSVURG00010004824 ENSVURG00010004807 ENSVURG00010004804 ENSVURG00010004790 ENSVURG00010004733 ENSVURG00010004681 ENSVURG00010004665 BTN1A1 (ENSVURG00010004551) ENSVURG00010004530 ZNF286A (ENSVURG00010004522) PIK3R5 (ENSVURG00010004490) ENSVURG00010004479 Common wonbat MODERN SPECIES 1007 ENSVURG00010015984 ENSVURG00010015977 ENSVURG00010015968 ENSVURG00010015963 ENSVURG00010015957 ENSVURG00010015953 ENSVURG00010015945 ENSVURG00010015942 ENSVURG00010015933 ENSVURG00010015924 ENSVURG00010015916 #32 ENSVURG00010015906 ENSVURG00010015903 ENSVURG00010015897 ENSVURG00010015891 ENSVURG00010015885 #32 ENSVURG00010015875 ENSVURG00010015872 ENSVURG00010015866 ENSVURG00010015862 ENSVURG00010015803 #14 ENSVURG00010015790 ENSVURG00010015766 ENSVURG00010015753 ENSVURG00010015733 ENSVURG00010015716 ENSVURG00010015671 ENSVURG00010015660 ENSVURG00010015651 ENSVURG00010015635 ENSVURG00010015618 Common wonbat MODERN SPECIES 968 ENSVURG00010007401 ENSVURG00010007406 ENSVURG00010007414 #32 ENSVURG00010007421 Common wonbat MODERN SPECIES 1007 ENSVURG00010015716 ENSVURG00010015733 ENSVURG00010015753 ENSVURG00010015766 ENSVURG00010015790 ENSVURG00010015803 #14 ENSVURG00010015862 ENSVURG00010015866 ENSVURG00010015872 ENSVURG00010015875 ENSVURG00010015885 #32 ENSVURG00010015891 ENSVURG00010015897 ENSVURG00010015903 ENSVURG00010015906 ENSVURG00010015916 #32 ENSVURG00010015924 ENSVURG00010015933 ENSVURG00010015942 ENSVURG00010015945 ENSVURG00010015953 ENSVURG00010015957 ENSVURG00010015963 ENSVURG00010015968 ENSVURG00010015977 ENSVURG00010015984 ENSVURG00010015986 ENSVURG00010015991 ENSVURG00010000347 ENSVURG00010000365 ENSVURG00010000395 Common wonbat MODERN SPECIES 1007 ENSVURG00010000895 ENSVURG00010000922 ENSVURG00010000937 ENSVURG00010000953 ENSVURG00010000996 ENSVURG00010001021 #14 ENSVURG00010001047 ENSVURG00010001073 ENSVURG00010001132 ENSVURG00010001164 ENSVURG00010001172 #25 ENSVURG00010001177 ENSVURG00010001199 ENSVURG00010001206 ENSVURG00010001221 ENSVURG00010001308 #32 ENSVURG00010001317 ENSVURG00010001341 ENSVURG00010001350 ENSVURG00010001356 ENSVURG00010001364 ENSVURG00010001372 ENSVURG00010001379 ENSVURG00010001381 ENSVURG00010001404 ENSVURG00010001436 ENSVURG00010001444 ENSVURG00010001469 ENSVURG00010001489 ENSVURG00010001495 ENSVURG00010001505 Opossum DUPLICATION Opossum MODERN SPECIES 1 PRPF3 (ENSMODG00000018774) MRPS21 (ENSMODG00000018783) ENSMODG00000018781 APH1A (ENSMODG00000018778) CA14 (ENSMODG00000018776) ENSMODG00000027412 ENSMODG00000018772 VPS45 (ENSMODG00000018771) OTUD7B (ENSMODG00000018770) MTMR11 (ENSMODG00000018769) SF3B4 (ENSMODG00000018767) SV2A (ENSMODG00000018766) ENSMODG00000044619 ENSMODG00000049030 ENSMODG00000050604 ENSMODG00000043839 #32 ENSMODG00000036508 HIST1H4I (ENSMODG00000044293) HIST1H4I (ENSMODG00000046729) HIST1H4I (ENSMODG00000045825) HIST1H4I (ENSMODG00000043804) HIST1H4I (ENSMODG00000037943) ENSMODG00000038666 HJV (ENSMODG00000018756) TXNIP (ENSMODG00000018755) ENSMODG00000018754 ANKRD34A (ENSMODG00000023216) LIX1L (ENSMODG00000018753) RBM8A (ENSMODG00000047652) ENSMODG00000018751 PEX11B (ENSMODG00000018750) Opossum MODERN SPECIES 1 RACK1 (ENSMODG00000004091) ENSMODG00000003964 TRIM7 (ENSMODG00000003934) ENSMODG00000003901 ENSMODG00000036746 ENSMODG00000037511 HIST1H4I (ENSMODG00000048847) HIST1H4I (ENSMODG00000044280) HIST1H4I (ENSMODG00000039062) ENSMODG00000042315 ENSMODG00000040444 #32 ENSMODG00000042479 ENSMODG00000050148 ENSMODG00000051254 ENSMODG00000050666 ENSMODG00000036588 #32 ENSMODG00000046657 ENSMODG00000003817 BTNL9 (ENSMODG00000003790) ENSMODG00000023693 MGAT1 (ENSMODG00000003277) ENSMODG00000048266 ENSMODG00000039382 ENSMODG00000039164 ENSMODG00000045185 ENSMODG00000048797 ENSMODG00000003171 PTGER3 (ENSMODG00000003176) ENSMODG00000003163 ENSMODG00000012123 monDomV1R1213 (ENSMODG00000042132) Opossum MODERN SPECIES 1 ENSMODG00000048797 ENSMODG00000045185 ENSMODG00000039164 ENSMODG00000039382 ENSMODG00000048266 MGAT1 (ENSMODG00000003277) ENSMODG00000023693 BTNL9 (ENSMODG00000003790) ENSMODG00000003817 ENSMODG00000046657 ENSMODG00000036588 #32 ENSMODG00000050666 ENSMODG00000051254 ENSMODG00000050148 ENSMODG00000042479 ENSMODG00000040444 #32 ENSMODG00000042315 HIST1H4I (ENSMODG00000039062) HIST1H4I (ENSMODG00000044280) HIST1H4I (ENSMODG00000048847) ENSMODG00000037511 ENSMODG00000036746 ENSMODG00000003901 TRIM7 (ENSMODG00000003934) ENSMODG00000003964 RACK1 (ENSMODG00000004091) ENSMODG00000004101 ZKSCAN1 (ENSMODG00000004145) ENSMODG00000028855 ENSMODG00000050533 ZNF3 (ENSMODG00000004159) Platypus DUPLICATION Platypus DUPLICATION Platypus MODERN SPECIES 88 ENSOANG00000040130 ENSOANG00000045306 ENSOANG00000038051 ENSOANG00000038321 ENSOANG00000048075 ENSOANG00000047142 ENSOANG00000037816 ENSOANG00000045607 #25 ENSOANG00000037825 ENSOANG00000051301 ENSOANG00000045094 ENSOANG00000038387 ENSOANG00000045700 #35 ENSOANG00000039935 ENSOANG00000000173 ENSOANG00000046785 #32 ENSOANG00000042644 ENSOANG00000040672 ENSOANG00000041683 #32 H1-2 (ENSOANG00000047788) ENSOANG00000042244 #25 H2AC7 (ENSOANG00000049037) ENSOANG00000040002 ENSOANG00000038871 ENSOANG00000049432 ENSOANG00000038547 #32 ENSOANG00000047517 ENSOANG00000048954 #25 ENSOANG00000044997 ENSOANG00000038271 ENSOANG00000049942 Platypus MODERN SPECIES 88 ENSOANG00000047522 ENSOANG00000038285 #35 ENSOANG00000047856 ENSOANG00000050887 ENSOANG00000040521 ENSOANG00000039179 ENSOANG00000044108 ENSOANG00000050614 ENSOANG00000036855 ENSOANG00000051035 ENSOANG00000049861 ENSOANG00000046437 ENSOANG00000037672 #35 ENSOANG00000038211 ENSOANG00000048323 ENSOANG00000048678 #32 ENSOANG00000036523 SDHC (ENSOANG00000048957) MPZ (ENSOANG00000041826) PCP4L1 (ENSOANG00000037665) NR1I3 (ENSOANG00000041107) TOMM40L (ENSOANG00000047077) ENSOANG00000039172 ENSOANG00000038491 NDUFS2 (ENSOANG00000047151) ENSOANG00000046313 B4GALT3 (ENSOANG00000048632) ENSOANG00000038415 ENSOANG00000036199 ENSOANG00000044116 ENSOANG00000050912 Platypus MODERN SPECIES 88 ENSOANG00000038321 ENSOANG00000048075 ENSOANG00000047142 ENSOANG00000037816 ENSOANG00000045607 #25 ENSOANG00000037825 ENSOANG00000051301 ENSOANG00000045094 ENSOANG00000038387 ENSOANG00000045700 #35 ENSOANG00000039935 ENSOANG00000000173 ENSOANG00000046785 #32 ENSOANG00000042644 ENSOANG00000040672 ENSOANG00000041683 #32 H1-2 (ENSOANG00000047788) ENSOANG00000042244 #25 H2AC7 (ENSOANG00000049037) ENSOANG00000040002 ENSOANG00000038871 ENSOANG00000049432 ENSOANG00000038547 #32 ENSOANG00000047517 ENSOANG00000048954 #25 ENSOANG00000044997 ENSOANG00000038271 ENSOANG00000049942 ENSOANG00000044699 #32 ENSOANG00000040358 ENSOANG00000040609 Platypus MODERN SPECIES 88 ENSOANG00000042644 ENSOANG00000040672 ENSOANG00000041683 #32 H1-2 (ENSOANG00000047788) ENSOANG00000042244 #25 H2AC7 (ENSOANG00000049037) ENSOANG00000040002 ENSOANG00000038871 ENSOANG00000049432 ENSOANG00000038547 #32 ENSOANG00000047517 ENSOANG00000048954 #25 ENSOANG00000044997 ENSOANG00000038271 ENSOANG00000049942 ENSOANG00000044699 #32 ENSOANG00000040358 ENSOANG00000040609 H2AC21 (ENSOANG00000047209) ENSOANG00000047921 ENSOANG00000041422 ENSOANG00000036404 ENSOANG00000039121 ENSOANG00000049615 ENSOANG00000036630 ENSOANG00000020663 ENSOANG00000019718 ENSOANG00000037103 ENSOANG00000031496 ENSOANG00000045163 VANGL2 (ENSOANG00000046213) Platypus MODERN SPECIES 88 ENSOANG00000045094 ENSOANG00000038387 ENSOANG00000045700 #35 ENSOANG00000039935 ENSOANG00000000173 ENSOANG00000046785 #32 ENSOANG00000042644 ENSOANG00000040672 ENSOANG00000041683 #32 H1-2 (ENSOANG00000047788) ENSOANG00000042244 #25 H2AC7 (ENSOANG00000049037) ENSOANG00000040002 ENSOANG00000038871 ENSOANG00000049432 ENSOANG00000038547 #32 ENSOANG00000047517 ENSOANG00000048954 #25 ENSOANG00000044997 ENSOANG00000038271 ENSOANG00000049942 ENSOANG00000044699 #32 ENSOANG00000040358 ENSOANG00000040609 H2AC21 (ENSOANG00000047209) ENSOANG00000047921 ENSOANG00000041422 ENSOANG00000036404 ENSOANG00000039121 ENSOANG00000049615 ENSOANG00000036630 Sauria ANCESTRAL SPECIES 78 ENSGT01100000263474.a.b.a.d #36 ENSGT00940000156302 ENSGT01100000263559.B #32 ENSGT00940000153118.db.a.a.b.a.a ENSGT01100000263474.a.b.b.j.a ##36 ENSGT01100000263514.A.f ENSGT01060000248528.b.jh.a.a.b ENSGT01100000263474.a.b.b.j.b.a ##36 ENSGT01060000248528.b.jh.b ENSGT01100000263514.A.e.a ENSGT00940000153118.db.a.a.a ENSGT01100000263474.a.b.b.j.b.b.b.b ##36 ENSGT00950000183089 #37 ENSGT01100000263474.a.b.b.j.b.b.a ##36 ENSGT00940000153118.db.a.a.b.a.b Lepidosauria ANCESTRAL SPECIES 171 ENSGT01100000263474.a.b.b.j.b.b.b.b ##36 ENSGT00940000156302 ENSGT01100000263559.B #32 ENSGT00950000183089 #37 ENSGT01060000248528.b.kh ENSGT01100000263474.a.b.b.j.b.b.b.a.a ##36 ENSGT00940000153092.a.a ENSGT01100000263559.A.f #25 ENSGT00940000153118.db.a.a.b.b tuatara DUPLICATION tuatara MODERN SPECIES 236 ENSSPUG00000018728 ENSSPUG00000018726 #25 ENSSPUG00000018723 ENSSPUG00000018720 ENSSPUG00000018719 ##36 ENSSPUG00000018716 ##36 ENSSPUG00000018713 ENSSPUG00000018710 #32 PFAS (ENSSPUG00000018703) RANGRF (ENSSPUG00000018698) SLC25A35 (ENSSPUG00000018695) ENSSPUG00000018688 ARHGEF15 (ENSSPUG00000018677) PLOD3 (ENSSPUG00000018633) ZNHIT1 (ENSSPUG00000018605) FIS1 (ENSSPUG00000018599) CLDN15 (ENSSPUG00000018594) ENSSPUG00000018587 ENSSPUG00000018580 ENSSPUG00000018577 ENSSPUG00000018573 ENSSPUG00000018571 tuatara DUPLICATION tuatara MODERN SPECIES 1221 ENSSPUG00000017863 ENSSPUG00000017860 ENSSPUG00000017853 ENSSPUG00000017850 TM9SF1 (ENSSPUG00000017843) TSSK4 (ENSSPUG00000017835) ENSSPUG00000017826 GMPR2 (ENSSPUG00000017818) ENSSPUG00000017806 TGM1 (ENSSPUG00000017783) RABGGTA (ENSSPUG00000017767) NOP9 (ENSSPUG00000017755) CIDEB (ENSSPUG00000017744) ENSSPUG00000017736 ENSSPUG00000017734 ENSSPUG00000017731 #32 ENSSPUG00000017727 #37 ENSSPUG00000017726 ENSSPUG00000017721 ENSSPUG00000017718 #37 H1-1 (ENSSPUG00000017701) ENSSPUG00000017696 ENSSPUG00000017692 ENSSPUG00000017681 #37 ENSSPUG00000017676 ENSSPUG00000017671 #37 ENSSPUG00000017664 ENSSPUG00000017660 ENSSPUG00000017653 ENSSPUG00000017647 ENSSPUG00000017643 tuatara MODERN SPECIES 1528 ENSSPUG00000010038 ENSSPUG00000010048 ENSSPUG00000010068 ENSSPUG00000010092 ENSSPUG00000010105 ##36 ENSSPUG00000010120 ##36 H2AC7 (ENSSPUG00000010127) ENSSPUG00000010130 #32 ENSSPUG00000010176 ZNF581 (ENSSPUG00000010209) U2AF2 (ENSSPUG00000010229) EPN1 (ENSSPUG00000010256) ENSSPUG00000010289 ISOC2 (ENSSPUG00000010332) SHISA7 (ENSSPUG00000010345) UBE2S (ENSSPUG00000010366) RCVRN (ENSSPUG00000010379) RPL28 (ENSSPUG00000010390) ENSSPUG00000010413 TMEM238 (ENSSPUG00000010434) ENSSPUG00000010444 Episquamata ANCESTRAL SPECIES 5 ENSGT01030000234535.A.w ENSGT00390000018426 ENSGT01030000234558.A.a.a.a ENSGT01030000234571.b.b.a.a.b ENSGT00940000165211 ENSGT00940000160771 ENSGT00390000013834 ENSGT00940000161324 ENSGT00390000007600 ENSGT01100000263559.A.f #25 ENSGT00940000160426 ENSGT01100000263474.a.b.b.j.b.b.b.a.b.a ##36 ENSGT00990000203553.c.a.a.b.a.a.a.b #15 ENSGT01100000263474.a.b.b.j.b.b.b.a.b.b.a ##36 ENSGT00940000156302.jc ENSGT01100000263559.B #32 ENSGT01100000263504.b ENSGT01100000263514.A.f.o.a ENSGT00950000183089 #37 ENSGT01060000248528.b.kh ENSGT01100000263474.a.b.b.j.b.b.b.a.a.a.a.b.b.a.b ##36 ENSGT00940000153118.db.b ENSGT00940000153402 ENSGT01100000263537.a ENSGT00520000055620.A.c ENSGT00390000014495 ENSGT00940000153649.B ENSGT00940000153886.a.a ENSGT00940000154888.`b.a ENSGT00550000075058 ENSGT00940000162245 Laterata ANCESTRAL SPECIES 6 ENSGT00390000014089 ENSGT00940000160916 ENSGT00390000013260.C ENSGT00390000006233.c.a.b ENSGT00930000151058 ENSGT00390000003753.b ENSGT00530000066362 ENSGT00940000171081 ENSGT00390000013440 ENSGT01100000263954 ENSGT01100000263559.A.f #25 ENSGT00940000153092.a.a ENSGT01100000263474.a.b.b.j.b.b.b.a.a.a.a.a ##36 ENSGT01100000263474.a.b.b.j.b.b.b.a.b.b.a ##36 ENSGT00940000156302.jc ENSGT01100000263559.B #32 ENSGT00940000153125.F ENSGT01100000263515.a.b.a.b.a ENSGT01030000234599.a.b ENSGT00940000155774.b ENSGT00950000182961.a.b.b.g ENSGT00950000182961.a.b.b.h ENSGT00940000160320 ENSGT00410000026495.B ENSGT00530000063694.b ENSGT01050000244814.a.a.a.b ENSGT00950000182696.A.a ENSGT00940000155964 ENSGT00530000063707.a ENSGT00530000063509.A ENSGT00940000155955.C Common wall lizard DUPLICATION Common wall lizard MODERN SPECIES 4 ENSPMRG00000013115 ENSPMRG00000013120 ENSPMRG00000013126 PLOD3 (ENSPMRG00000013206) ARHGEF15 (ENSPMRG00000013487) ENSPMRG00000013520 SLC25A35 (ENSPMRG00000013600) RANGRF (ENSPMRG00000013608) ENSPMRG00000013625 PFAS (ENSPMRG00000013655) ENSPMRG00000013675 #25 ENSPMRG00000013678 ENSPMRG00000013680 ##36 ENSPMRG00000013682 ENSPMRG00000013687 H3C15 (ENSPMRG00000013691) #32 ENSPMRG00000013693 ##31 ENSPMRG00000013696 #14 ENSPMRG00000013701 ##31 ENSPMRG00000013705 ##36 ENSPMRG00000013707 ENSPMRG00000013710 #28 ENSPMRG00000013712 ENSPMRG00000013715 ##36 ENSPMRG00000013718 ##36 ENSPMRG00000013720 ENSPMRG00000013724 ENSPMRG00000013730 RPGRIP1 (ENSPMRG00000013738) SUPT16H (ENSPMRG00000013774) CHD8 (ENSPMRG00000013813) Common wall lizard MODERN SPECIES 10 ENSPMRG00000007180 ENSPMRG00000007187 ENSPMRG00000007195 FBXL12 (ENSPMRG00000007198) UBL5 (ENSPMRG00000007209) ENSPMRG00000007214 PIN1 (ENSPMRG00000007220) ENSPMRG00000007236 OLFM2 (ENSPMRG00000007242) ENSPMRG00000007254 ENSPMRG00000007274 RDH8 (ENSPMRG00000007284) ENSPMRG00000007295 ENSPMRG00000007301 ##36 ENSPMRG00000007306 H3C13 (ENSPMRG00000007311) #32 ENSPMRG00000007315 ENSPMRG00000007324 ENSPMRG00000007330 ENSPMRG00000007336 ##36 HDAC7 (ENSPMRG00000007354) ENSPMRG00000007416 SLC48A1 (ENSPMRG00000007424) ENSPMRG00000007434 ENSPMRG00000007445 ENSPMRG00000007457 ENDOU (ENSPMRG00000007465) ENSPMRG00000007476 PPP1R1A (ENSPMRG00000007492) ENSPMRG00000007497 ENSPMRG00000007503 Common wall lizard MODERN SPECIES 1 STRA8 (ENSPMRG00000011902) WDR91 (ENSPMRG00000011912) TMEM140 (ENSPMRG00000011972) AGBL3 (ENSPMRG00000011977) PDE6H (ENSPMRG00000011991) ARHGDIB (ENSPMRG00000011997) ENSPMRG00000012002 ENSPMRG00000012008 MGP (ENSPMRG00000012012) ENSPMRG00000012015 ENSPMRG00000012019 SMCO3 (ENSPMRG00000012022) ENSPMRG00000012026 ENSPMRG00000012030 #25 ENSPMRG00000012040 ##36 ENSPMRG00000012042 #32 ENSPMRG00000012044 ENSPMRG00000012046 ENSPMRG00000012052 APOLD1 (ENSPMRG00000012062) DDX47 (ENSPMRG00000012066) ENSPMRG00000012071 ENSPMRG00000019714 ENSPMRG00000019720 ENSPMRG00000019726 ENSPMRG00000019731 FAM234B (ENSPMRG00000019736) GSG1 (ENSPMRG00000019745) ENSPMRG00000019749 EMP1 (ENSPMRG00000019757) ENSPMRG00000019785 Argentine black and white tegu DUPLICATION Argentine black and white tegu MODERN SPECIES 38 ENSSMRG00000003927 IPO4 (ENSSMRG00000003911) TM9SF1 (ENSSMRG00000003908) ENSSMRG00000003905 CHMP4A (ENSSMRG00000003900) ENSSMRG00000003897 NEDD8 (ENSSMRG00000003894) GMPR2 (ENSSMRG00000003886) ENSSMRG00000003878 TGM1 (ENSSMRG00000003863) RABGGTA (ENSSMRG00000003846) NOP9 (ENSSMRG00000003844) CIDEB (ENSSMRG00000003843) ENSSMRG00000003841 #15 ENSSMRG00000003839 ##36 ENSSMRG00000003828 #32 PDZD11 (ENSSMRG00000003824) KIF4A (ENSSMRG00000003797) TAF9 (ENSSMRG00000003792) ENSSMRG00000003774 ENSSMRG00000003758 ENSSMRG00000003751 ENSSMRG00000003750 ENSSMRG00000003743 ##35 PER1 (ENSSMRG00000003730) VAMP2 (ENSSMRG00000003721) AURKB (ENSSMRG00000003714) TMEM107 (ENSSMRG00000003702) ENSSMRG00000003690 HES7 (ENSSMRG00000003687) ENSSMRG00000003683 Argentine black and white tegu MODERN SPECIES 6 NUP205 (ENSSMRG00000014005) POLR3H (ENSSMRG00000014008) CNOT4 (ENSSMRG00000014010) ENSSMRG00000014012 STRA8 (ENSSMRG00000014027) WDR91 (ENSSMRG00000014028) ENSSMRG00000014073 TMEM140 (ENSSMRG00000014074) AGBL3 (ENSSMRG00000014075) PDE6H (ENSSMRG00000014076) ARHGDIB (ENSSMRG00000014087) ERP27 (ENSSMRG00000014089) MGP (ENSSMRG00000014092) ENSSMRG00000014093 ENSSMRG00000014094 ENSSMRG00000014097 #32 ENSSMRG00000014098 ENSSMRG00000014099 APOLD1 (ENSSMRG00000014100) DDX47 (ENSSMRG00000014101) ENSSMRG00000014102 ENSSMRG00000014103 HEBP1 (ENSSMRG00000014104) ENSSMRG00000014105 FAM234B (ENSSMRG00000014106) GSG1 (ENSSMRG00000014107) EMP1 (ENSSMRG00000014108) ENSSMRG00000014109 GRIN2B (ENSSMRG00000014110) ATF7IP (ENSSMRG00000014112) PLBD1 (ENSSMRG00000014113) Toxicofera ANCESTRAL SPECIES 142 ENSGT01100000263474.a.b.b.j.b.b.b.a.a.a.b ##36 ENSGT01100000263559.B #32 ENSGT00940000153125.F Lizard MODERN SPECIES 1013 IPO4 (ENSACAG00000003973) ENSACAG00000037232 TM9SF1 (ENSACAG00000010366) ENSACAG00000003999 ENSACAG00000043716 GMPR2 (ENSACAG00000004007) TINF2 (ENSACAG00000004097) ENSACAG00000004106 RABGGTA (ENSACAG00000004170) CIDEB (ENSACAG00000004392) ENSACAG00000044900 ENSACAG00000043566 #14 ENSACAG00000004420 #32 ENSACAG00000004423 #37 ENSACAG00000004430 ENSACAG00000004469 ENSACAG00000004688 ENSACAG00000042496 ENSACAG00000004696 ENSACAG00000045559 ENSACAG00000004700 ENSACAG00000036931 #37 PER1 (ENSACAG00000004715) ENSACAG00000023444 ENSACAG00000004832 TMEM107 (ENSACAG00000004902) ENSACAG00000045393 ENSACAG00000029011 Elapidae ANCESTRAL SPECIES 2 ENSGT00390000001945 ENSGT00640000091578 ENSGT00940000161852.y.b ENSGT00940000159148 ENSGT00940000162394 ENSGT00940000154535.C ENSGT01000000214708 ENSGT00940000167399.a ENSGT00940000161385 ENSGT01060000248528.b.kh ENSGT01100000263506.a #14 ENSGT00940000153125.D ENSGT01010000230061 ENSGT01100000263474.a.b.b.j.b.b.b.a.b.a.a.a ##36 ENSGT00940000160426 ENSGT01100000263559.B #32 ENSGT00940000153125.F ENSGT01100000263474.a.b.b.j.b.b.b.a.b.a.b ##36 ENSGT01100000263474.a.b.b.j.b.b.b.a.b.a.a.b ##36 ENSGT00940000159065 ENSGT00390000002307 ENSGT00940000159931 ENSGT00940000154126.h.a ENSGT00530000063825.B ENSGT00940000160217 ENSGT00940000160763 ENSGT00940000161232 ENSGT00940000160712.i ENSGT00390000016619.b.d.a ENSGT00940000156784 ENSGT00940000158061 Indian cobra MODERN SPECIES 337 CHMP4A (ENSNNAG00000006999) ENSNNAG00000007007 NEDD8 (ENSNNAG00000007020) GMPR2 (ENSNNAG00000007054) TGM1 (ENSNNAG00000007239) RABGGTA (ENSNNAG00000007419) ENSNNAG00000007434 ##36 ENSNNAG00000007442 ##36 ENSNNAG00000007450 ENSNNAG00000007467 PDZD11 (ENSNNAG00000007476) ENSNNAG00000007513 TAF9 (ENSNNAG00000007565) ENSNNAG00000007605 ENSNNAG00000007621 ENSNNAG00000007640 #32 ENSNNAG00000007647 #37 ENSNNAG00000007670 AURKB (ENSNNAG00000007690) ENSNNAG00000007752 ALOXE3 (ENSNNAG00000007800) ENSNNAG00000008177 GUCY2D (ENSNNAG00000008330) ENSNNAG00000008515 TRAPPC1 (ENSNNAG00000008533) ENSNNAG00000008551 KCNAB3 (ENSNNAG00000008574) CHD3 (ENSNNAG00000009480) CYB5D1 (ENSNNAG00000018023) NAA38 (ENSNNAG00000018028) ENSNNAG00000018031 Elapidae_a ANCESTRAL SPECIES 52 ENSGT00390000001945 ENSGT00640000091578 ENSGT00940000161852.y.b ENSGT00940000159148 ENSGT00940000162394 ENSGT00940000154535.C ENSGT01000000214708 ENSGT00940000167399.a ENSGT00510000050353 ENSGT01100000263474.a.b.b.j.b.b.b.a.a.a.a.b.a ##36 ENSGT01100000263474.a.b.b.j.b.b.b.a.a.a.a.b.b.a.a.b ##36 ENSGT01060000248528.b.kh ENSGT01100000263474.a.b.b.j.b.b.b.a.a.a.a.b.b.a.b ##36 ENSGT01100000263474.a.b.b.j.b.b.b.a.b.a.a.a ##36 ENSGT00940000160426 ENSGT01100000263559.B #32 ENSGT00940000153125.F ENSGT01100000263474.a.b.b.j.b.b.b.a.b.a.b ##36 ENSGT01100000263474.a.b.b.j.b.b.b.a.b.a.a.b ##36 ENSGT00940000159065 ENSGT00390000002307 ENSGT00940000159931 ENSGT00940000154126.h.a ENSGT00530000063825.B ENSGT00940000160217 ENSGT00940000160763 ENSGT00940000161232 ENSGT00940000160712.j ENSGT00940000160712.i ENSGT00390000016619.b.d.a ENSGT00940000156784 Blue-lipped sea krait MODERN SPECIES 5358 H3C13 (ENSLLTG00000004401) #32 ENSLLTG00000004397 ENSLLTG00000004388 ##36 ENSLLTG00000004363 Acanthophiinae ANCESTRAL SPECIES 52 ENSGT00640000091578 ENSGT00940000161852.y.b ENSGT00940000159148 ENSGT00940000162394 ENSGT00940000154535.C ENSGT01000000214708 ENSGT00940000167399.a ENSGT00510000050353 ENSGT01100000263474.a.b.b.j.b.b.b.a.a.a.a.b.a ##36 ENSGT01100000263474.a.b.b.j.b.b.b.a.a.a.a.b.b.a.a.b ##36 ENSGT01060000248528.b.kh ENSGT01100000263474.a.b.b.j.b.b.b.a.a.a.a.b.b.a.a.a ##36 ENSGT00940000153125.D.e.b ENSGT01100000263474.a.b.b.j.b.b.b.a.b.a.a.a ##36 ENSGT00940000160426 ENSGT01100000263559.B #32 ENSGT00940000153125.F ENSGT01100000263474.a.b.b.j.b.b.b.a.b.a.b ##36 ENSGT01100000263474.a.b.b.j.b.b.b.a.b.a.a.b ##36 ENSGT00940000159065 ENSGT00390000002307 ENSGT00940000159931 ENSGT00940000154126.h.a ENSGT00530000063825.B ENSGT00940000160217 ENSGT00940000160763 ENSGT00940000161232 ENSGT00940000160712.i ENSGT00390000016619.b.d.a ENSGT00940000156784 ENSGT00940000158061 Mainland tiger snake MODERN SPECIES 210 ENSNSUG00000018339 CLDN15 (ENSNSUG00000018340) FIS1 (ENSNSUG00000018341) ENSNSUG00000018342 ZNHIT1 (ENSNSUG00000018343) PLOD3 (ENSNSUG00000018345) ENSNSUG00000018456 ENSNSUG00000018457 ENSNSUG00000018458 RANGRF (ENSNSUG00000018459) ENSNSUG00000018460 PFAS (ENSNSUG00000018461) ENSNSUG00000018462 ENSNSUG00000018463 ENSNSUG00000018464 ##36 H3C14 (ENSNSUG00000018465) #32 ENSNSUG00000018466 ENSNSUG00000018467 ##36 ENSNSUG00000018468 ENSNSUG00000018469 ENSNSUG00000018470 ENSNSUG00000018471 ENSNSUG00000018472 ENSNSUG00000018473 ENSNSUG00000018474 RAB2B (ENSNSUG00000018964) ENSNSUG00000018965 METTL3 (ENSNSUG00000018966) ENSNSUG00000018968 ENSNSUG00000018969 OR4E1 (ENSNSUG00000018970) Eastern brown snake DUPLICATION Eastern brown snake MODERN SPECIES 1031 ENSPTXG00000016138 ENSPTXG00000016137 #32 Eastern brown snake MODERN SPECIES 63 ENSPTXG00000010773 ENSPTXG00000010771 ENSPTXG00000010769 ENSPTXG00000010768 FBXL12 (ENSPTXG00000010764) UBL5 (ENSPTXG00000010763) PIN1 (ENSPTXG00000010762) ENSPTXG00000010761 OLFM2 (ENSPTXG00000010760) ENSPTXG00000010755 ENSPTXG00000010751 ENSPTXG00000010748 ENSPTXG00000010746 ENSPTXG00000010745 ##36 H2AC7 (ENSPTXG00000010743) H3C13 (ENSPTXG00000010742) #32 ENSPTXG00000010740 ENSPTXG00000010739 ENSPTXG00000010738 ENSPTXG00000010737 ##36 HDAC7 (ENSPTXG00000010734) ENSPTXG00000010726 SLC48A1 (ENSPTXG00000010723) RAPGEF3 (ENSPTXG00000010678) ENSPTXG00000010668 ENDOU (ENSPTXG00000010666) NEUROD4 (ENSPTXG00000010664) ENSPTXG00000010661 PPP1R1A (ENSPTXG00000010660) PDE1B (ENSPTXG00000010658) ENSPTXG00000010656 Archelosauria ANCESTRAL SPECIES 76 ENSGT00940000153118.db.a.a.b.a.a.b ENSGT01100000263474.a.b.b.j.a.a.b ##36 ENSGT01100000263514.A.f ENSGT01060000248528.b.kh ENSGT01100000263559.A.f #25 ENSGT00940000156302 ENSGT01100000263474.a.b.b.j.a.a.a ##36 ENSGT01100000263559.B #32 ENSGT01100000263506.a #14 ENSGT00940000153118.db.a.b ENSGT01100000263474.a.b.b.j.b.b.a ##36 ENSGT00950000183089.s.a.a #37 ENSGT01100000263474.a.b.b.j.b.b.b.b.b.a ##36 ENSGT00940000153118.db.a.a.b.a.a.a.b Archosauria ANCESTRAL SPECIES 190 ENSGT01100000263559.B #32 ENSGT01100000263506.a #14 Aves ANCESTRAL SPECIES 1 ENSGT00960000189329 ENSGT00390000014089 ENSGT00940000160916 ENSGT00390000013260.C ENSGT00390000006233.c.a.b ENSGT00930000151058 ENSGT00390000003753.b ENSGT00530000066362 ENSGT01030000234601.c.a.b ENSGT00940000171081 ENSGT00390000013440.e ENSGT01100000263840 ENSGT01100000263474.a.b.b.k ##36 ENSGT00940000153118.db.a.b ENSGT00950000183089.s.a.a #37 ENSGT01100000263559.B #32 ENSGT01100000263506.a #14 ENSGT01030000234599.a.b ENSGT00940000155774.b ENSGT00950000182961.a.b.b ENSGT00940000160320 ENSGT00410000026495.B ENSGT00530000063694.b ENSGT01050000244814.a.a.a.b ENSGT00950000182696.A.a ENSGT00940000155964 ENSGT00530000063707.a ENSGT00530000063509.A ENSGT00940000155955.C ENSGT00390000000159 ENSGT00940000155858 Neognathae ANCESTRAL SPECIES 96 ENSGT00940000153118.db.a.a.b.a.a.b.b ENSGT01100000263474.a.b.b.j.b.b.b.b.b.a.a.a.a ##36 ENSGT01100000263559.B #32 ENSGT01100000263506.a #14 Galloanserae ANCESTRAL SPECIES 69 ENSGT01100000263559.A.f #25 ENSGT01100000263474.a.b.b.j.b.a ##36 ENSGT01060000248528.b.jh.a.a.b ENSGT00940000153118.db.a.a.b.a.a.a.a ENSGT01100000263474.a.b.b.j.b.b.b.b.b.a.a.b ##36 ENSGT00950000183089.s.a.a.b.b.a.a #37 ENSGT01100000263559.B #32 ENSGT01100000263506.a #14 Phasianidae ANCESTRAL SPECIES ENSGT01050000244814.a.a.a.b ENSGT00530000063694.b ENSGT00410000026495.B ENSGT00940000160320 ENSGT00950000182961.a.b.b ENSGT00940000155774.b ENSGT01030000234599.a.b ENSGT00940000161385.m.b.a ENSGT01100000263474.a.b.b.j.a.a.b ##36 ENSGT01100000263514.A.f.v ENSGT01060000248528.b.jh.a.a.b ENSGT01100000263474.a.b.b.j.b.a ##36 ENSGT00940000153118.db.a.a.b.a.a.a.a ENSGT01100000263474.a.b.b.j.b.b.b.b.b.a.a.b ##36 ENSGT00950000183089.s.a.a.b.b.a.a #37 ENSGT01100000263559.B #32 ENSGT01100000263506.a #14 ENSGT01100000264469 ENSGT00390000013440.e ENSGT01030000234601.c.a.b ENSGT00410000026290.j ENSGT00390000003753.b ENSGT00930000151058 ENSGT00390000006233.c.a.b ENSGT00390000013260.C ENSGT00940000160916 ENSGT00390000014089 ENSGT00960000189329 ENSGT00390000001566 ENSGT00390000017181 ENSGT00950000182953.B.a Phasianidae_b ANCESTRAL SPECIES 9 ENSGT00940000153118.db.a.a.b.a.a.a.b ENSGT00990000203553.c.a.b #10 ENSGT01100000263559.A.f #25 ENSGT01100000263474.a.b.b.j.b.a ##36 ENSGT00940000153118.db.a.a.b.a.a.a.a ENSGT01100000263474.a.b.b.j.b.b.b.b.b.a.a.b ##36 ENSGT00950000183089.s.a.a.b.b.a.a #37 ENSGT01100000263559.B #32 ENSGT01100000263506.a #14 ENSGT01100000264469 ENSGT00390000013440.e ENSGT01030000234601.c.a.b ENSGT00530000066362 ENSGT00390000003753.b ENSGT00930000151058 ENSGT00390000006233.c.a.b ENSGT00390000013260.C ENSGT00940000160916 ENSGT00390000014089 ENSGT00960000189329 ENSGT00390000001566 ENSGT00390000017181 ENSGT00950000182953.B.a Chicken DUPLICATION Chicken DUPLICATION Chicken MODERN SPECIES HIST1H2B5 (ENSGALG00010014375) ##36 ENSGALG00010012324 ENSGALG00010014449 #37 H2B-I (ENSGALG00010011987) ##36 HIST1H101 (ENSGALG00010012144) #37 ENSGALG00010012307 ENSGALG00010012317 ENSGALG00010014431 #37 HIST1H3H (ENSGALG00010012277) #32 HIST1H110 (ENSGALG00010011989) #37 HIST1H2B7 (ENSGALG00010014416) ##36 H2B-VII (ENSGALG00010014403) ##36 HIST1H3H (ENSGALG00010012266) #25 H2AFJ (ENSGALG00010012248) ENSGALG00010012179 ##28 HIST1H3H (ENSGALG00010012169) #32 H2B-I (ENSGALG00010012157) #14 HIST1H2A4L1 (ENSGALG00010013579) WBP11 (ENSGALG00010012127) SMCO3 (ENSGALG00010012117) ART4 (ENSGALG00010012098) OC3 (ENSGALG00010012092) MGP (ENSGALG00010012083) ERP27 (ENSGALG00010012069) ARHGDIB (ENSGALG00010012059) PDE6H (ENSGALG00010012048) ENSGALG00010012035 ENSGALG00010014468 TMEM140 (ENSGALG00010012028) ENSGALG00010012022 WDR91 (ENSGALG00010012016) Chicken MODERN SPECIES H2AFJ (ENSGALG00010012248) HIST1H3H (ENSGALG00010012266) #25 H2B-VII (ENSGALG00010014403) ##36 HIST1H2B7 (ENSGALG00010014416) ##36 HIST1H110 (ENSGALG00010011989) #37 HIST1H3H (ENSGALG00010012277) #32 ENSGALG00010014431 #37 ENSGALG00010012317 ENSGALG00010012307 HIST1H101 (ENSGALG00010012144) #37 H2B-I (ENSGALG00010011987) ##36 ENSGALG00010014449 #37 ENSGALG00010012324 HIST1H2B5 (ENSGALG00010014375) ##36 ENSGALG00010012331 HIST1H3H (ENSGALG00010013592) #32 HIST1H3H (ENSGALG00010012338) #25 H2B-I (ENSGALG00010012345) ##36 HIST1H2A4L1 (ENSGALG00010012350) APOLD1 (ENSGALG00010009659) DDX47 (ENSGALG00010009672) ENSGALG00010009689 HEBP1 (ENSGALG00010010995) ENSGALG00010011013 FAM234B (ENSGALG00010011027) GSG1 (ENSGALG00010011038) EMP1 (ENSGALG00010011080) GRIN2B (ENSGALG00010011090) ATF7IP (ENSGALG00010011144) PLBD1 (ENSGALG00010011231) GUCY2C (ENSGALG00010011323) Chicken MODERN SPECIES ERP27 (ENSGALG00010012069) MGP (ENSGALG00010012083) OC3 (ENSGALG00010012092) ART4 (ENSGALG00010012098) SMCO3 (ENSGALG00010012117) WBP11 (ENSGALG00010012127) HIST1H2A4L1 (ENSGALG00010013579) H2B-I (ENSGALG00010012157) #14 HIST1H3H (ENSGALG00010012169) #32 ENSGALG00010012179 ##28 H2AFJ (ENSGALG00010012248) HIST1H3H (ENSGALG00010012266) #25 H2B-VII (ENSGALG00010014403) ##36 HIST1H2B7 (ENSGALG00010014416) ##36 HIST1H110 (ENSGALG00010011989) #37 HIST1H3H (ENSGALG00010012277) #32 ENSGALG00010014431 #37 ENSGALG00010012317 ENSGALG00010012307 HIST1H101 (ENSGALG00010012144) #37 H2B-I (ENSGALG00010011987) ##36 ENSGALG00010014449 #37 ENSGALG00010012324 HIST1H2B5 (ENSGALG00010014375) ##36 ENSGALG00010012331 HIST1H3H (ENSGALG00010013592) #32 HIST1H3H (ENSGALG00010012338) #25 H2B-I (ENSGALG00010012345) ##36 HIST1H2A4L1 (ENSGALG00010012350) APOLD1 (ENSGALG00010009659) DDX47 (ENSGALG00010009672) Neognathae_b ANCESTRAL SPECIES 83 ENSGT00940000153118.db.a.b.d ENSGT01100000263474.a.b.b.j.b.b.b.b.b.a.a.a.a ##36 ENSGT01100000263559.B #32 ENSGT00940000161385.m.a.b Neognathae_c ANCESTRAL SPECIES 106 ENSGT01100000263559.B #32 ENSGT01100000263567.a.b ##35 ENSGT01100000263474.a.b.b.j.b.b.a ##36 Golden eagle MODERN SPECIES 18 ENSACCG00020014337 ENSACCG00020014302 ENSACCG00020014283 ENSACCG00020014268 ENSACCG00020014257 ENSACCG00020014244 ENSACCG00020014230 #37 ENSACCG00020014214 ENSACCG00020014202 ##36 ENSACCG00020014188 ENSACCG00020014175 ##36 ENSACCG00020014165 ##36 ENSACCG00020014159 #37 ENSACCG00020014147 ENSACCG00020014141 ##36 ENSACCG00020014131 #32 ENSACCG00020014121 ##35 ENSACCG00020014109 ##36 ENSACCG00020014102 ENSACCG00020014095 #37 APOLD1 (ENSACCG00020014085) DDX47 (ENSACCG00020014067) ENSACCG00020014060 HEBP1 (ENSACCG00020014050) ENSACCG00020014036 FAM234B (ENSACCG00020014012) GSG1 (ENSACCG00020013993) EMP1 (ENSACCG00020013982) GRIN2B (ENSACCG00020013961) ATF7IP (ENSACCG00020013900) PLBD1 (ENSACCG00020013881) Passeriformes ANCESTRAL SPECIES 221 ENSGT01100000263559.B #32 ENSGT00940000161385.m.a.b Passeriformes_d ANCESTRAL SPECIES 225 ENSGT01100000263559.B #32 ENSGT00940000161385.m.a.b Flycatcher MODERN SPECIES 10 ENSFALG00000024028 ENSFALG00000024477 ENSFALG00000025542 ENSFALG00000026328 ENSFALG00000027986 #37 ENSFALG00000028565 ENSFALG00000025898 ENSFALG00000015030 #28 ENSFALG00000028498 ##36 ENSFALG00000014910 ENSFALG00000026855 ##31 ENSFALG00000024259 ENSFALG00000024410 ENSFALG00000024851 ENSFALG00000025608 ENSFALG00000025838 #32 ENSFALG00000011368 #37 ENSFALG00000027151 APOLD1 (ENSFALG00000015142) DDX47 (ENSFALG00000011391) ENSFALG00000011403 HEBP1 (ENSFALG00000028562) ENSFALG00000024132 FAM234B (ENSFALG00000011447) GSG1 (ENSFALG00000024709) EMP1 (ENSFALG00000011466) GRIN2B (ENSFALG00000011468) ENSFALG00000026886 ATF7IP (ENSFALG00000011483) PLBD1 (ENSFALG00000011495) GUCY2C (ENSFALG00000011542) Passeriformes_g ANCESTRAL SPECIES 70 ENSGT01100000263474.a.b.b.j.b.b.b.b.b.a.a.a.b.a.b ##36 ENSGT00950000183089.s.a.b #37 ENSGT00940000153118.db.a.a.a.f ENSGT01100000263474.a.b.b.j.b.b.b.b.b.a.a.a.a ##36 ENSGT01100000263514.A.f.v ENSGT01100000263504.a.b.b.b.b.ub ENSGT01100000263474.a.b.b.j.b.b.b.b.b.a.a.a.b.a.a ##36 ENSGT00940000153118.db.a.a.b.a.a.a.b ENSGT01100000263559.B #32 ENSGT01060000248528.b.kh ENSGT01100000263514.A.f.u.a.a ENSGT01100000263474.a.b.b.j.a.a.b ##36 ENSGT01100000263514.A.f.u.b Passeroidea ANCESTRAL SPECIES 81 ENSGT00940000153118.db.a.b.d ENSGT01100000263474.a.b.b.j.b.b.b.b.b.a.a.a.a ##36 ENSGT01100000263514.A.f.v ENSGT01100000263504.a.b.b.b.b.ub ENSGT01100000263474.a.b.b.j.b.b.b.b.b.a.a.a.b.a.a ##36 ENSGT00940000153118.db.a.a.b.a.a.a.b ENSGT01100000263559.B #32 ENSGT01060000248528.b.kh ENSGT01100000263514.A.f.u.a.a ENSGT01100000263474.a.b.b.j.a.a.b ##36 ENSGT01100000263514.A.f.u.b Common canary MODERN SPECIES 6 ENSSCAG00000006409 ENSSCAG00000006411 ENSSCAG00000006418 ##36 ENSSCAG00000006421 ENSSCAG00000006423 ##36 ENSSCAG00000006427 ENSSCAG00000006440 ENSSCAG00000006442 ##31 ENSSCAG00000006445 ENSSCAG00000006448 ENSSCAG00000006451 ENSSCAG00000006453 ##36 ENSSCAG00000006454 ENSSCAG00000006459 ENSSCAG00000006460 ENSSCAG00000006463 #32 ENSSCAG00000006467 ENSSCAG00000006472 ENSSCAG00000006475 ##36 ENSSCAG00000006478 #25 ENSSCAG00000006480 ##28 ENSSCAG00000006483 ##36 ENSSCAG00000006487 ENSSCAG00000006488 ##36 ENSSCAG00000006490 ENSSCAG00000006495 SMCO3 (ENSSCAG00000006501) ART4 (ENSSCAG00000006506) ENSSCAG00000006509 MGP (ENSSCAG00000006513) ERP27 (ENSSCAG00000006517) Zebra finch MODERN SPECIES 11 ENSTGUG00000023259 ##36 ENSTGUG00000025906 ENSTGUG00000018918 ENSTGUG00000025029 ENSTGUG00000021685 ENSTGUG00000009332 #37 ENSTGUG00000027107 ENSTGUG00000024300 ENSTGUG00000026411 ENSTGUG00000029262 #25 ENSTGUG00000024041 ENSTGUG00000023762 ENSTGUG00000024227 ##36 ENSTGUG00000024417 ENSTGUG00000026778 ##36 ENSTGUG00000025908 #32 ENSTGUG00000028919 ENSTGUG00000022164 ENSTGUG00000021922 ENSTGUG00000027005 DDX47 (ENSTGUG00000009385) ENSTGUG00000009414 HEBP1 (ENSTGUG00000022626) ENSTGUG00000022523 FAM234B (ENSTGUG00000009424) GSG1 (ENSTGUG00000009437) EMP1 (ENSTGUG00000026511) GRIN2B (ENSTGUG00000009456) ATF7IP (ENSTGUG00000009479) PLBD1 (ENSTGUG00000009494) GUCY2C (ENSTGUG00000009506) Cryptodira ANCESTRAL SPECIES 131 ENSGT01100000263504.a.b.b.b.a.b ENSGT00940000155501.b.i ENSGT00940000160426 ENSGT01100000263474.a.b.b.j.a.a.a.b ##36 ENSGT01100000263559.B #32 ENSGT01100000263506.a #14 Chinese turtle DUPLICATION Chinese turtle MODERN SPECIES 1257 ENSPSIG00000001626 ENSPSIG00000001616 #25 H4C4 (ENSPSIG00000001606) ENSPSIG00000001592 ENSPSIG00000001580 ENSPSIG00000001543 ENSPSIG00000001532 #37 ENSPSIG00000003758 ##36 ENSPSIG00000001516 ENSPSIG00000001507 #28 ENSPSIG00000001495 #10 ENSPSIG00000001472 ##36 ENSPSIG00000001455 ENSPSIG00000001422 ENSPSIG00000003754 #25 ENSPSIG00000001382 #32 ENSPSIG00000003742 ##36 ENSPSIG00000001368 ENSPSIG00000001405 ENSPSIG00000003689 ENSPSIG00000003674 SMCO3 (ENSPSIG00000001390) ENSPSIG00000001381 ART4 (ENSPSIG00000003662) MGP (ENSPSIG00000003615) ERP27 (ENSPSIG00000003609) ARHGDIB (ENSPSIG00000016539) PDE6H (ENSPSIG00000016325) AGBL3 (ENSPSIG00000015627) TMEM140 (ENSPSIG00000015467) WDR91 (ENSPSIG00000014113) Chinese turtle DUPLICATION Chinese turtle MODERN SPECIES 1257 ENSPSIG00000001455 ENSPSIG00000001472 ##36 ENSPSIG00000001495 #10 ENSPSIG00000001507 #28 ENSPSIG00000001516 ENSPSIG00000003758 ##36 ENSPSIG00000001532 #37 ENSPSIG00000001543 ENSPSIG00000001580 ENSPSIG00000001592 H4C4 (ENSPSIG00000001606) ENSPSIG00000001616 #25 ENSPSIG00000001626 ENSPSIG00000001644 ##36 ENSPSIG00000001655 ##36 ENSPSIG00000001671 #32 ENSPSIG00000001694 #32 Chinese turtle MODERN SPECIES 1257 ENSPSIG00000001472 ##36 ENSPSIG00000001495 #10 ENSPSIG00000001507 #28 ENSPSIG00000001516 ENSPSIG00000003758 ##36 ENSPSIG00000001532 #37 ENSPSIG00000001543 ENSPSIG00000001580 ENSPSIG00000001592 H4C4 (ENSPSIG00000001606) ENSPSIG00000001616 #25 ENSPSIG00000001626 ENSPSIG00000001644 ##36 ENSPSIG00000001655 ##36 ENSPSIG00000001671 #32 ENSPSIG00000001694 #32 Testudinoidea ANCESTRAL SPECIES 4 ENSGT00390000013192 ENSGT00390000014089 ENSGT00940000160916 ENSGT00390000013260.C ENSGT00390000006233.c.a.b ENSGT00930000151058 ENSGT00390000003753.b ENSGT00530000066362 ENSGT01030000234601.c.a.b ENSGT00940000171081 ENSGT00390000013440.e ENSGT01100000263840 ENSGT01070000253822.D.a.n.a ENSGT00940000153118.db.a.a.b.a.a.a.b.b ENSGT01100000263474.a.b.b.j.a.b.a.a ##36 ENSGT01100000263559.B #32 ENSGT01100000263506.a #14 ENSGT00940000153118.db.a.a.b.a.a.a.b.a.a ENSGT01100000263474.a.b.b.j.b.b.b.a.b ##36 ENSGT01100000263504.a.b.b.b.a.a ENSGT01100000263474.a.b.b.k ##36 ENSGT00940000153092.a.a ENSGT01100000263559.A.f #25 ENSGT01060000248528.b.jh.a.b ENSGT01060000248528.b.jh.b ENSGT01060000248528.b.kh ENSGT01100000263474.a.b.a.d #36 ENSGT00940000156302.fc ENSGT00940000155501.b.i.a.a ENSGT01100000263515.a.b.a.b.a.c ENSGT01030000234599.a.b Testudinidae ANCESTRAL SPECIES ENSGT00510000046732.A ENSGT00390000008610.a.a ENSGT00940000156163 ENSGT00940000159690 ENSGT00940000161093 ENSGT00530000063947.C ENSGT01030000234582.e.b ENSGT01030000234582.f.a.b ENSGT00390000012877 ENSGT00940000158413 ENSGT00530000063516.a.a ENSGT00390000009554 ENSGT00940000160984 ENSGT00940000153118.db.a.a.b.a.a.a.b.a.b.b ENSGT01100000263474.a.b.b.j.a.b.a.a ##36 ENSGT01100000263559.B #32 ENSGT01060000248528.b.kh ENSGT01100000263504.a.b.b.b.b ENSGT01100000263474.a.b.b.j.b.b.b.a.b ##36 ENSGT01100000263504.a.b.b.b.a.a ENSGT01100000263474.a.b.b.k ##36 ENSGT00940000153092.a.a ENSGT01100000263559.A.f #25 ENSGT01060000248528.b.jh.a.b ENSGT00730000110920.a ENSGT00940000156536 ENSGT00390000009497 ENSGT00940000155350 ENSGT00940000156251 ENSGT00950000182988.a.b.a.u ENSGT00530000063816.c Abingdon island giant tortoise MODERN SPECIES 1041 PDE6H (ENSCABG00000006859) ARHGDIB (ENSCABG00000006862) ERP27 (ENSCABG00000006864) MGP (ENSCABG00000006867) ART4 (ENSCABG00000006871) SMCO3 (ENSCABG00000006875) ENSCABG00000006876 ENSCABG00000006881 ENSCABG00000006882 ENSCABG00000006886 ENSCABG00000006896 ENSCABG00000006903 ENSCABG00000006907 ENSCABG00000006909 ENSCABG00000006916 ##36 ENSCABG00000006930 #32 ENSCABG00000006935 ENSCABG00000006939 ENSCABG00000006948 ##36 ENSCABG00000006973 #37 Emydidae ANCESTRAL SPECIES 163 ENSGT01100000263504.a.b.b.b.a.b ENSGT00940000155501.b.i.a.b ENSGT00940000160426 ENSGT01100000263474.a.b.b.j.a.a.a.b ##36 ENSGT01100000263559.B #32 ENSGT00940000153118.db.a.a.b.a.a.a.b.b ENSGT01100000263474.a.b.b.j.a.b.a.a ##36 Three-toed box turtle DUPLICATION Three-toed box turtle MODERN SPECIES 28 ARHGDIB (ENSTMTG00000007864) ERP27 (ENSTMTG00000007875) ART4 (ENSTMTG00000007900) SMCO3 (ENSTMTG00000007909) ENSTMTG00000007917 ENSTMTG00000007937 ENSTMTG00000000055 ENSTMTG00000000081 ENSTMTG00000000091 ##36 ENSTMTG00000000146 ENSTMTG00000000153 #25 ENSTMTG00000000169 #25 ENSTMTG00000000178 ENSTMTG00000000207 ENSTMTG00000000214 ##36 ENSTMTG00000000222 #32 ENSTMTG00000000228 ENSTMTG00000000236 ##36 ENSTMTG00000000247 ENSTMTG00000000270 #25 ENSTMTG00000000281 ENSTMTG00000000293 ENSTMTG00000000303 ENSTMTG00000000311 ENSTMTG00000000321 ENSTMTG00000000337 ENSTMTG00000000347 H2AC7 (ENSTMTG00000000360) ENSTMTG00000000374 ##36 ENSTMTG00000000387 ENSTMTG00000000420 Three-toed box turtle MODERN SPECIES 28 ENSTMTG00000000236 ##36 ENSTMTG00000000247 ENSTMTG00000000270 #25 ENSTMTG00000000281 ENSTMTG00000000293 ENSTMTG00000000303 ENSTMTG00000000311 ENSTMTG00000000321 ENSTMTG00000000337 ENSTMTG00000000347 H2AC7 (ENSTMTG00000000360) ENSTMTG00000000374 ##36 ENSTMTG00000000387 ENSTMTG00000000420 ENSTMTG00000000438 ##36 ENSTMTG00000000446 #32 ENSTMTG00000000461 #14 ENSTMTG00000000472 ENSTMTG00000000484 #25 ENSTMTG00000000494 ##36 ENSTMTG00000000502 APOLD1 (ENSTMTG00000000521) DDX47 (ENSTMTG00000000534) ENSTMTG00000000551 HEBP1 (ENSTMTG00000000561) FAM234B (ENSTMTG00000000579) GSG1 (ENSTMTG00000000615) EMP1 (ENSTMTG00000000648) GRIN2B (ENSTMTG00000000660) ATF7IP (ENSTMTG00000000701) PLBD1 (ENSTMTG00000000759) Anura ANCESTRAL SPECIES 306 ENSGT01100000263559.A.d #25 ENSGT01100000263559.B #32 ENSGT01060000248528.b.kh ENSGT01100000263474.a.b.b ##36 ENSGT00940000153118 ENSGT00950000183089 #37 ENSGT01060000248528.b.jh.b ENSGT01100000263567.a.b ##35 Frog DUPLICATION Frog MODERN SPECIES 3 dsn1 (ENSXETG00000026399) fbxl12 (ENSXETG00000000645) clec4m (ENSXETG00000000646) clec4e (ENSXETG00000000644) ENSXETG00000041630 lmx1b.2 (ENSXETG00000000641) chchd5 (ENSXETG00000042136) atp13a1 (ENSXETG00000000635) ENSXETG00000043627 ENSXETG00000048856 ENSXETG00000045293 ENSXETG00000047630 #37 ENSXETG00000048747 ENSXETG00000045405 h3c14 (ENSXETG00000044910) #32 h3c14 (ENSXETG00000044354) #32 ENSXETG00000048482 ##36 ENSXETG00000045042 #37 ENSXETG00000046881 ##35 ENSXETG00000044704 ENSXETG00000048427 ENSXETG00000043134 #37 ENSXETG00000046040 h2ac12 (ENSXETG00000048231) h3c14 (ENSXETG00000044611) #32 h3c14 (ENSXETG00000044528) #25 ENSXETG00000034713 ENSXETG00000043592 #37 ENSXETG00000049375 h3c14 (ENSXETG00000046975) #25 ENSXETG00000048994 Frog MODERN SPECIES 6 ENSXETG00000047743 ENSXETG00000039086 MGC145518 (ENSXETG00000032392) ENSXETG00000047285 ENSXETG00000035631 ENSXETG00000030081 ENSXETG00000024374 ENSXETG00000044061 ENSXETG00000043716 znf568 (ENSXETG00000024362) ENSXETG00000042392 ENSXETG00000042865 #31 ENSXETG00000030307 ENSXETG00000046344 ENSXETG00000046312 h3c14 (ENSXETG00000045663) #32 ENSXETG00000047120 ##31 ENSXETG00000045443 ##36 ENSXETG00000046535 ENSXETG00000035834 ENSXETG00000049148 ENSXETG00000045159 ENSXETG00000043919 ENSXETG00000044932 ENSXETG00000037756 ENSXETG00000044695 XB5896327 [provisional:trim25] (ENSXETG00000031315) ENSXETG00000003407 ENSXETG00000042609 ENSXETG00000018403 ENSXETG00000037506 Frog MODERN SPECIES 9 ENSXETG00000048548 tnfrsf12a (ENSXETG00000048784) b2m (ENSXETG00000033246) trim72 (ENSXETG00000034870) ENSXETG00000038188 ENSXETG00000040750 ENSXETG00000044796 ENSXETG00000043427 ##36 ENSXETG00000038302 #37 h3c14 (ENSXETG00000042734) #25 ENSXETG00000044502 ENSXETG00000034552 ENSXETG00000042925 ENSXETG00000049291 #37 h2ac21 (ENSXETG00000044100) h3c14 (ENSXETG00000044526) #32 ENSXETG00000046306 pycard (ENSXETG00000036975) ENSXETG00000038422 ENSXETG00000034437 ENSXETG00000038074 ENSXETG00000043862 bcl7c (ENSXETG00000036060) ENSXETG00000036989 ZNF646 (ENSXETG00000036016) znf668 (ENSXETG00000038510) stx4 (ENSXETG00000048105) stx1b (ENSXETG00000030140) hsd3b7 (ENSXETG00000001913) setd1a (ENSXETG00000001921) fbxl19 (ENSXETG00000037049) Frog DUPLICATION Frog MODERN SPECIES 9 ENSXETG00000043472 ##35 ENSXETG00000039538 ENSXETG00000042002 ENSXETG00000033833 #37 ENSXETG00000044553 znf585a (ENSXETG00000045538) XB5772961 [provisional] (ENSXETG00000038026) ENSXETG00000040589 ENSXETG00000047810 ENSXETG00000041825 ##36 ENSXETG00000036199 ##36 ENSXETG00000043294 ##35 ENSXETG00000042757 ENSXETG00000042082 ##36 ENSXETG00000041789 h3c14 (ENSXETG00000045858) #32 ENSXETG00000045984 ENSXETG00000048291 ##36 ENSXETG00000006489 ENSXETG00000043404 ENSXETG00000041488 ##35 ENSXETG00000045744 ENSXETG00000046804 ##36 ENSXETG00000044756 #37 ENSXETG00000038981 #37 ENSXETG00000043458 ENSXETG00000042653 ENSXETG00000045527 ENSXETG00000037055 ENSXETG00000043446 ENSXETG00000038638 Frog MODERN SPECIES 3 h3c14 (ENSXETG00000046975) #25 ENSXETG00000049375 ENSXETG00000043592 #37 ENSXETG00000034713 h3c14 (ENSXETG00000044528) #25 h3c14 (ENSXETG00000044611) #32 h2ac12 (ENSXETG00000048231) ENSXETG00000046040 ENSXETG00000043134 #37 ENSXETG00000048427 ENSXETG00000044704 ENSXETG00000046881 ##35 ENSXETG00000045042 #37 ENSXETG00000048482 ##36 h3c14 (ENSXETG00000044354) #32 h3c14 (ENSXETG00000044910) #32 ENSXETG00000045405 ENSXETG00000048747 ENSXETG00000047630 #37 ENSXETG00000045293 ENSXETG00000048856 ENSXETG00000043627 atp13a1 (ENSXETG00000000635) chchd5 (ENSXETG00000042136) lmx1b.2 (ENSXETG00000000641) ENSXETG00000041630 clec4e (ENSXETG00000000644) clec4m (ENSXETG00000000646) fbxl12 (ENSXETG00000000645) dsn1 (ENSXETG00000026399) ENSXETG00000047317 Frog MODERN SPECIES 9 ENSXETG00000049087 ENSXETG00000046935 h3c14 (ENSXETG00000048174) #25 ENSXETG00000043641 ENSXETG00000049129 ##36 ENSXETG00000047959 ENSXETG00000038839 h2ac21 (ENSXETG00000043529) ENSXETG00000049253 ENSXETG00000024252 #37 ENSXETG00000043274 ENSXETG00000042414 ENSXETG00000048370 h2ac21 (ENSXETG00000048013) ENSXETG00000047553 #37 h3c14 (ENSXETG00000044638) #32 ENSXETG00000046168 h2ac21 (ENSXETG00000044601) h2bc21 (ENSXETG00000043429) ##36 XB5836359 [provisional:trim25] (ENSXETG00000045507) ENSXETG00000044900 ENSXETG00000040161 ENSXETG00000047256 ENSXETG00000043833 zg16 (ENSXETG00000012436) doc2a (ENSXETG00000044702) ino80e (ENSXETG00000033211) hirip3 (ENSXETG00000031738) dusp14 (ENSXETG00000040580) dppa2 (ENSXETG00000032148) sez6l2 (ENSXETG00000011339) Frog MODERN SPECIES 3 h3c14 (ENSXETG00000041525) #25 ENSXETG00000040201 ENSXETG00000043306 ENSXETG00000048561 ##36 ENSXETG00000042408 ENSXETG00000042790 ENSXETG00000045640 #37 h3c14 (ENSXETG00000042473) #25 h2bc11 (ENSXETG00000039549) ##36 ENSXETG00000048994 h3c14 (ENSXETG00000046975) #25 ENSXETG00000049375 ENSXETG00000043592 #37 ENSXETG00000034713 h3c14 (ENSXETG00000044528) #25 h3c14 (ENSXETG00000044611) #32 h2ac12 (ENSXETG00000048231) ENSXETG00000046040 ENSXETG00000043134 #37 ENSXETG00000048427 ENSXETG00000044704 ENSXETG00000046881 ##35 ENSXETG00000045042 #37 ENSXETG00000048482 ##36 h3c14 (ENSXETG00000044354) #32 h3c14 (ENSXETG00000044910) #32 ENSXETG00000045405 ENSXETG00000048747 ENSXETG00000047630 #37 ENSXETG00000045293 ENSXETG00000048856 Frog MODERN SPECIES 6 ENSXETG00000044932 ENSXETG00000037756 ENSXETG00000044695 XB5896327 [provisional:trim25] (ENSXETG00000031315) ENSXETG00000003407 ENSXETG00000042609 ENSXETG00000018403 ENSXETG00000037506 ENSXETG00000047410 ENSXETG00000045929 ##36 ENSXETG00000047380 h3c14 (ENSXETG00000043383) #32 ENSXETG00000041056 #37 h3c14 (ENSXETG00000041419) #25 ENSXETG00000045612 ##36 h3c14 (ENSXETG00000046180) #32 ENSXETG00000048401 ENSXETG00000042804 #31 ENSXETG00000045736 ##36 ENSXETG00000049063 ENSXETG00000046114 ENSXETG00000043740 ##36 ENSXETG00000037819 ENSXETG00000045718 ENSXETG00000042142 ENSXETG00000040222 ENSXETG00000039120 ENSXETG00000046964 ENSXETG00000048915 ENSXETG00000042187 ENSXETG00000041465 Frog MODERN SPECIES 6 ENSXETG00000039120 ENSXETG00000040222 ENSXETG00000042142 ENSXETG00000045718 ENSXETG00000037819 ENSXETG00000043740 ##36 ENSXETG00000046114 ENSXETG00000049063 ENSXETG00000045736 ##36 ENSXETG00000042804 #31 ENSXETG00000048401 h3c14 (ENSXETG00000046180) #32 ENSXETG00000045612 ##36 h3c14 (ENSXETG00000041419) #25 ENSXETG00000041056 #37 h3c14 (ENSXETG00000043383) #32 ENSXETG00000047380 ENSXETG00000045929 ##36 ENSXETG00000047410 ENSXETG00000037506 ENSXETG00000018403 ENSXETG00000042609 ENSXETG00000003407 XB5896327 [provisional:trim25] (ENSXETG00000031315) ENSXETG00000044695 ENSXETG00000037756 ENSXETG00000044932 ENSXETG00000043919 ENSXETG00000045159 ENSXETG00000049148 ENSXETG00000035834 Frog MODERN SPECIES 9 ENSXETG00000042049 ENSXETG00000045956 ENSXETG00000036839 ENSXETG00000042733 ENSXETG00000043974 ENSXETG00000035804 ENSXETG00000034508 ENSXETG00000044854 ENSXETG00000041669 ENSXETG00000047998 ENSXETG00000042771 ENSXETG00000048301 ENSXETG00000046250 ##36 ENSXETG00000048504 ENSXETG00000027962 #37 h3c14 (ENSXETG00000045967) #32 ENSXETG00000033789 XB5924310 (ENSXETG00000007273) ENSXETG00000042965 ENSXETG00000048859 ENSXETG00000038680 ENSXETG00000036338 ENSXETG00000027332 ENSXETG00000047417 ENSXETG00000045026 ENSXETG00000041463 ENSXETG00000046333 ENSXETG00000024253 ENSXETG00000046276 ENSXETG00000024242 ENSXETG00000041796 Leishan spiny toad DUPLICATION Leishan spiny toad MODERN SPECIES 838 ENSLLEG00000016304 #32 ENSLLEG00000016284 ENSLLEG00000016240 ENSLLEG00000016214 ENSLLEG00000016166 #37 ENSLLEG00000016139 #32 ENSLLEG00000016114 #37 Leishan spiny toad MODERN SPECIES 218 ENSLLEG00000010442 ##36 ENSLLEG00000010422 ENSLLEG00000010394 #37 ENSLLEG00000010373 #32 ENSLLEG00000010363 Leishan spiny toad MODERN SPECIES 219 ENSLLEG00000010632 ##36 ENSLLEG00000010599 ENSLLEG00000010561 #37 ENSLLEG00000010540 #32 ENSLLEG00000010517 ENSLLEG00000010490 ENSLLEG00000010471 #37 ENSLLEG00000010454 #37 Leishan spiny toad MODERN SPECIES 1479 ENSLLEG00000027160 ##36 ENSLLEG00000027174 ENSLLEG00000027192 H3C13 (ENSLLEG00000027207) #32 ENSLLEG00000027230 ENSLLEG00000027245 #37 ENSLLEG00000027286 ENSLLEG00000027306 ##36 ENSLLEG00000027323 ENSLLEG00000027338 #36 ENSLLEG00000027358 Leishan spiny toad MODERN SPECIES 3 ENSLLEG00000019967 ##36 ENSLLEG00000019929 ENSLLEG00000019912 ENSLLEG00000019882 ##36 ENSLLEG00000019859 ENSLLEG00000019843 ENSLLEG00000019784 ##28 ENSLLEG00000019760 ENSLLEG00000019741 ##36 ENSLLEG00000019709 ENSLLEG00000019682 ENSLLEG00000019646 ##36 ENSLLEG00000019620 ENSLLEG00000019604 ##36 ENSLLEG00000019588 ENSLLEG00000019566 #32 ENSLLEG00000019518 ENSLLEG00000019463 #37 ENSLLEG00000019403 ENSLLEG00000019382 ##36 ENSLLEG00000019359 #28 ENSLLEG00000019340 #32 ENSLLEG00000019314 ##36 ENSLLEG00000019295 ENSLLEG00000019283 CYB561 (ENSLLEG00000019175) ENSLLEG00000019139 TANC2 (ENSLLEG00000017648) ENSLLEG00000017194 MRC2 (ENSLLEG00000015994) TLK2 (ENSLLEG00000014977) Leishan spiny toad MODERN SPECIES 628 ENSLLEG00000027021 ##36 ENSLLEG00000027038 #32 ENSLLEG00000027051 ENSLLEG00000027065 #37 Leishan spiny toad MODERN SPECIES 838 ENSLLEG00000016304 #32 ENSLLEG00000016284 ENSLLEG00000016240 ENSLLEG00000016214 ENSLLEG00000016166 #37 ENSLLEG00000016139 #32 ENSLLEG00000016114 #37 Leishan spiny toad MODERN SPECIES 3 DNTTIP1 (ENSLLEG00000030632) ENSLLEG00000030644 ENSLLEG00000014358 ITGB3 (ENSLLEG00000014416) ENSLLEG00000014646 ENSLLEG00000014904 TLK2 (ENSLLEG00000014977) MRC2 (ENSLLEG00000015994) ENSLLEG00000017194 TANC2 (ENSLLEG00000017648) ENSLLEG00000019139 CYB561 (ENSLLEG00000019175) ENSLLEG00000019283 ENSLLEG00000019295 ENSLLEG00000019314 ##36 ENSLLEG00000019340 #32 ENSLLEG00000019359 #28 ENSLLEG00000019382 ##36 ENSLLEG00000019403 ENSLLEG00000019463 #37 ENSLLEG00000019518 ENSLLEG00000019566 #32 ENSLLEG00000019588 ENSLLEG00000019604 ##36 ENSLLEG00000019620 ENSLLEG00000019646 ##36 ENSLLEG00000019682 ENSLLEG00000019709 ENSLLEG00000019741 ##36 ENSLLEG00000019760 ENSLLEG00000019784 ##28 Ciona ANCESTRAL SPECIES 676 ENSGT01100000263559.B #32 ENSGT01060000248528.b ENSGT01100000263514.A Ciona savignyi DUPLICATION Ciona savignyi MODERN SPECIES 315 ENSCSAVG00000001138 ENSCSAVG00000001140 ENSCSAVG00000001141 ENSCSAVG00000001144 ENSCSAVG00000001147 ENSCSAVG00000001407 ENSCSAVG00000001410 ENSCSAVG00000001413 ENSCSAVG00000001420 ENSCSAVG00000001445 ENSCSAVG00000001496 ENSCSAVG00000001575 ENSCSAVG00000001578 ENSCSAVG00000001580 ENSCSAVG00000001582 ENSCSAVG00000001587 #32 ENSCSAVG00000001590 ##35 ENSCSAVG00000001594 #28 ENSCSAVG00000001595 ENSCSAVG00000001596 ENSCSAVG00000001597 #25 ENSCSAVG00000001600 ENSCSAVG00000001609 ENSCSAVG00000001611 ENSCSAVG00000001613 ENSCSAVG00000001616 ENSCSAVG00000001722 ENSCSAVG00000001728 ENSCSAVG00000001731 ENSCSAVG00000001733 ENSCSAVG00000001737 Ciona savignyi MODERN SPECIES 263 ENSCSAVG00000010052 ENSCSAVG00000010055 ENSCSAVG00000010064 ENSCSAVG00000010066 ENSCSAVG00000010070 ENSCSAVG00000010072 ENSCSAVG00000010073 ENSCSAVG00000010075 ENSCSAVG00000010076 ENSCSAVG00000010077 ENSCSAVG00000010078 ENSCSAVG00000010082 #32 ENSCSAVG00000010084 ENSCSAVG00000010087 #32 ENSCSAVG00000010089 ENSCSAVG00000010130 #32 ENSCSAVG00000010131 ENSCSAVG00000010132 ENSCSAVG00000010133 ENSCSAVG00000010135 ENSCSAVG00000010138 ENSCSAVG00000010139 ENSCSAVG00000010140 ENSCSAVG00000010141 ENSCSAVG00000010143 ENSCSAVG00000010145 ENSCSAVG00000010146 ENSCSAVG00000010147 ENSCSAVG00000010155 ENSCSAVG00000010165 ENSCSAVG00000010167 Ciona savignyi DUPLICATION Ciona savignyi DUPLICATION Ciona savignyi DUPLICATION Ciona savignyi MODERN SPECIES 263 ENSCSAVG00000010165 ENSCSAVG00000010167 ENSCSAVG00000010170 ENSCSAVG00000010204 ENSCSAVG00000010214 ENSCSAVG00000010240 ENSCSAVG00000010244 ENSCSAVG00000010251 ENSCSAVG00000010256 ENSCSAVG00000010261 ENSCSAVG00000010270 ENSCSAVG00000010280 ENSCSAVG00000010281 ENSCSAVG00000010294 ENSCSAVG00000010303 #32 ENSCSAVG00000010307 #32 ENSCSAVG00000010309 ENSCSAVG00000010312 ENSCSAVG00000010313 ENSCSAVG00000010315 ENSCSAVG00000010317 ENSCSAVG00000010318 ENSCSAVG00000010320 ENSCSAVG00000010324 ENSCSAVG00000010327 ENSCSAVG00000010332 ENSCSAVG00000010337 ENSCSAVG00000010348 ENSCSAVG00000010349 ENSCSAVG00000010362 Ciona savignyi MODERN SPECIES 263 ENSCSAVG00000010146 ENSCSAVG00000010145 ENSCSAVG00000010143 ENSCSAVG00000010141 ENSCSAVG00000010140 ENSCSAVG00000010139 ENSCSAVG00000010138 ENSCSAVG00000010135 ENSCSAVG00000010133 ENSCSAVG00000010132 ENSCSAVG00000010131 ENSCSAVG00000010130 #32 ENSCSAVG00000010089 ENSCSAVG00000010087 #32 ENSCSAVG00000010084 ENSCSAVG00000010082 #32 ENSCSAVG00000010078 ENSCSAVG00000010077 ENSCSAVG00000010076 ENSCSAVG00000010075 ENSCSAVG00000010073 ENSCSAVG00000010072 ENSCSAVG00000010070 ENSCSAVG00000010066 ENSCSAVG00000010064 ENSCSAVG00000010055 ENSCSAVG00000010052 ENSCSAVG00000010036 ENSCSAVG00000010033 ENSCSAVG00000010031 ENSCSAVG00000010029 Ciona savignyi MODERN SPECIES 263 ENSCSAVG00000010155 ENSCSAVG00000010165 ENSCSAVG00000010167 ENSCSAVG00000010170 ENSCSAVG00000010204 ENSCSAVG00000010214 ENSCSAVG00000010240 ENSCSAVG00000010244 ENSCSAVG00000010251 ENSCSAVG00000010256 ENSCSAVG00000010261 ENSCSAVG00000010270 ENSCSAVG00000010280 ENSCSAVG00000010281 ENSCSAVG00000010294 ENSCSAVG00000010303 #32 ENSCSAVG00000010307 #32 ENSCSAVG00000010309 ENSCSAVG00000010312 ENSCSAVG00000010313 ENSCSAVG00000010315 ENSCSAVG00000010317 ENSCSAVG00000010318 ENSCSAVG00000010320 ENSCSAVG00000010324 ENSCSAVG00000010327 ENSCSAVG00000010332 ENSCSAVG00000010337 ENSCSAVG00000010348 ENSCSAVG00000010349 ENSCSAVG00000010362 Ciona savignyi MODERN SPECIES 263 ENSCSAVG00000010155 ENSCSAVG00000010147 ENSCSAVG00000010146 ENSCSAVG00000010145 ENSCSAVG00000010143 ENSCSAVG00000010141 ENSCSAVG00000010140 ENSCSAVG00000010139 ENSCSAVG00000010138 ENSCSAVG00000010135 ENSCSAVG00000010133 ENSCSAVG00000010132 ENSCSAVG00000010131 ENSCSAVG00000010130 #32 ENSCSAVG00000010089 ENSCSAVG00000010087 #32 ENSCSAVG00000010084 ENSCSAVG00000010082 #32 ENSCSAVG00000010078 ENSCSAVG00000010077 ENSCSAVG00000010076 ENSCSAVG00000010075 ENSCSAVG00000010073 ENSCSAVG00000010072 ENSCSAVG00000010070 ENSCSAVG00000010066 ENSCSAVG00000010064 ENSCSAVG00000010055 ENSCSAVG00000010052 ENSCSAVG00000010036 ENSCSAVG00000010033 Ciona savignyi MODERN SPECIES 263 ENSCSAVG00000008752 ENSCSAVG00000008747 ENSCSAVG00000008735 ENSCSAVG00000008717 ENSCSAVG00000008697 ENSCSAVG00000008681 ENSCSAVG00000008654 ENSCSAVG00000008594 ENSCSAVG00000008576 ENSCSAVG00000008422 ENSCSAVG00000008413 ENSCSAVG00000008410 ENSCSAVG00000008408 ENSCSAVG00000008181 ENSCSAVG00000007938 ENSCSAVG00000007936 #32 ENSCSAVG00000007933 ENSCSAVG00000007927 #25 ENSCSAVG00000007925 ENSCSAVG00000007797 ENSCSAVG00000007795 #25 ENSCSAVG00000007793 ENSCSAVG00000007791 #25 ENSCSAVG00000007790 ENSCSAVG00000007789 ENSCSAVG00000007781 ENSCSAVG00000007778 ENSCSAVG00000007776 ENSCSAVG00000007774 ENSCSAVG00000007769 ENSCSAVG00000007753 Ecdysozoa ANCESTRAL SPECIES 1 ENSGT01060000248528.b ENSGT01100000263559.B #32 ENSGT01100000263569.a.b.b ENSGT00940000164494 ENSGT01060000248528.a.b.a.a.a.b ENSGT01100000263559.A #25 Fruitfly DUPLICATION Fruitfly MODERN SPECIES 16 His3:CG33815 (FBgn0053815) #25 His1:CG33816 (FBgn0053816) His2B:CG33900 (FBgn0053900) His2A:CG33817 (FBgn0053817) His4:CG33899 (FBgn0053899) His3:CG33818 (FBgn0053818) #25 His1:CG33819 (FBgn0053819) His2B:CG33898 (FBgn0053898) His2A:CG33820 (FBgn0053820) His4:CG33897 (FBgn0053897) His3:CG33821 (FBgn0053821) #25 His1:CG33822 (FBgn0053822) His2B:CG33896 (FBgn0053896) His2A:CG33823 (FBgn0053823) His4:CG33895 (FBgn0053895) His3:CG33824 (FBgn0053824) #32 His1:CG33825 (FBgn0053825) His2B:CG33894 (FBgn0053894) His2A:CG33826 (FBgn0053826) His4:CG33893 (FBgn0053893) His3:CG33827 (FBgn0053827) #25 His1:CG33828 (FBgn0053828) His2B:CG33892 (FBgn0053892) His2A:CG33829 (FBgn0053829) His4:CG33891 (FBgn0053891) His3:CG33830 (FBgn0053830) #25 His1:CG33831 (FBgn0053831) His2B:CG33890 (FBgn0053890) His2A:CG33832 (FBgn0053832) His4:CG33889 (FBgn0053889) His3:CG33833 (FBgn0053833) #32 Fruitfly MODERN SPECIES 16 His3:CG33854 (FBgn0053854) #32 His1:CG33855 (FBgn0053855) His2B:CG33874 (FBgn0053874) His2A:CG33856 (FBgn0053856) His4:CG33873 (FBgn0053873) His3:CG33857 (FBgn0053857) #25 His1:CG33858 (FBgn0053858) His2B:CG33872 (FBgn0053872) His2A:CG33859 (FBgn0053859) His4:CG33871 (FBgn0053871) His3:CG33860 (FBgn0053860) #32 His1:CG33861 (FBgn0053861) His2B:CG33870 (FBgn0053870) His2A:CG33862 (FBgn0053862) His4:CG33869 (FBgn0053869) His3:CG33863 (FBgn0053863) #32 His1:CG33864 (FBgn0053864) His2B:CG33868 (FBgn0053868) His2A:CG33865 (FBgn0053865) His3:CG33866 (FBgn0053866) #25 Lamp1 (FBgn0032949) nompB (FBgn0016919) CG2201 (FBgn0032955) Df31 (FBgn0022893) Ac3 (FBgn0023416) Cul2 (FBgn0032956) CG2225 (FBgn0032957) eEF2 (FBgn0000559) nolo (FBgn0051619) step (FBgn0086779) CG1416 (FBgn0032961) Fruitfly MODERN SPECIES 16 His2A:CG31618 (FBgn0051618) His4:CG31611 (FBgn0051611) His3:CG31613 (FBgn0051613) #32 His1:CG33804 (FBgn0053804) His2B:CG33908 (FBgn0053908) His4:CG33907 (FBgn0053907) His3:CG33806 (FBgn0053806) #25 His1:CG33807 (FBgn0053807) His2B:CG33906 (FBgn0053906) His2A:CG33808 (FBgn0053808) His4:CG33905 (FBgn0053905) His3:CG33809 (FBgn0053809) #25 His1:CG33810 (FBgn0053810) His2B:CG33904 (FBgn0053904) His4:CG33903 (FBgn0053903) His3:CG33812 (FBgn0053812) #32 His1:CG33813 (FBgn0053813) His2B:CG33902 (FBgn0053902) His2A:CG33814 (FBgn0053814) His4:CG33901 (FBgn0053901) His3:CG33815 (FBgn0053815) #25 His1:CG33816 (FBgn0053816) His2B:CG33900 (FBgn0053900) His2A:CG33817 (FBgn0053817) His4:CG33899 (FBgn0053899) His3:CG33818 (FBgn0053818) #25 His1:CG33819 (FBgn0053819) His2B:CG33898 (FBgn0053898) His2A:CG33820 (FBgn0053820) His4:CG33897 (FBgn0053897) His3:CG33821 (FBgn0053821) #25 Fruitfly MODERN SPECIES 16 His3:CG33845 (FBgn0053845) #32 His1:CG33846 (FBgn0053846) His2B:CG33880 (FBgn0053880) His2A:CG33847 (FBgn0053847) His4:CG33879 (FBgn0053879) His3:CG33848 (FBgn0053848) #32 His1:CG33849 (FBgn0053849) His2B:CG33878 (FBgn0053878) His2A:CG33850 (FBgn0053850) His4:CG33877 (FBgn0053877) His3:CG33851 (FBgn0053851) #25 His1:CG33852 (FBgn0053852) His2B:CG33876 (FBgn0053876) His2A:CG33853 (FBgn0053853) His4:CG33875 (FBgn0053875) His3:CG33854 (FBgn0053854) #32 His1:CG33855 (FBgn0053855) His2B:CG33874 (FBgn0053874) His2A:CG33856 (FBgn0053856) His4:CG33873 (FBgn0053873) His3:CG33857 (FBgn0053857) #25 His1:CG33858 (FBgn0053858) His2B:CG33872 (FBgn0053872) His2A:CG33859 (FBgn0053859) His4:CG33871 (FBgn0053871) His3:CG33860 (FBgn0053860) #32 His1:CG33861 (FBgn0053861) His2B:CG33870 (FBgn0053870) His2A:CG33862 (FBgn0053862) His4:CG33869 (FBgn0053869) His3:CG33863 (FBgn0053863) #32 Fruitfly MODERN SPECIES 16 His3:CG33836 (FBgn0053836) #25 His1:CG33837 (FBgn0053837) His2B:CG33886 (FBgn0053886) His2A:CG33838 (FBgn0053838) His4:CG33885 (FBgn0053885) His3:CG33839 (FBgn0053839) #25 His1:CG33840 (FBgn0053840) His2B:CG33884 (FBgn0053884) His2A:CG33841 (FBgn0053841) His4:CG33883 (FBgn0053883) His3:CG33842 (FBgn0053842) #32 His1:CG33843 (FBgn0053843) His2B:CG33882 (FBgn0053882) His2A:CG33844 (FBgn0053844) His4:CG33881 (FBgn0053881) His3:CG33845 (FBgn0053845) #32 His1:CG33846 (FBgn0053846) His2B:CG33880 (FBgn0053880) His2A:CG33847 (FBgn0053847) His4:CG33879 (FBgn0053879) His3:CG33848 (FBgn0053848) #32 His1:CG33849 (FBgn0053849) His2B:CG33878 (FBgn0053878) His2A:CG33850 (FBgn0053850) His4:CG33877 (FBgn0053877) His3:CG33851 (FBgn0053851) #25 His1:CG33852 (FBgn0053852) His2B:CG33876 (FBgn0053876) His2A:CG33853 (FBgn0053853) His4:CG33875 (FBgn0053875) His3:CG33854 (FBgn0053854) #32 Fruitfly MODERN SPECIES 16 His3:CG33851 (FBgn0053851) #25 His1:CG33852 (FBgn0053852) His2B:CG33876 (FBgn0053876) His2A:CG33853 (FBgn0053853) His4:CG33875 (FBgn0053875) His3:CG33854 (FBgn0053854) #32 His1:CG33855 (FBgn0053855) His2B:CG33874 (FBgn0053874) His2A:CG33856 (FBgn0053856) His4:CG33873 (FBgn0053873) His3:CG33857 (FBgn0053857) #25 His1:CG33858 (FBgn0053858) His2B:CG33872 (FBgn0053872) His2A:CG33859 (FBgn0053859) His4:CG33871 (FBgn0053871) His3:CG33860 (FBgn0053860) #32 His1:CG33861 (FBgn0053861) His2B:CG33870 (FBgn0053870) His2A:CG33862 (FBgn0053862) His4:CG33869 (FBgn0053869) His3:CG33863 (FBgn0053863) #32 His1:CG33864 (FBgn0053864) His2B:CG33868 (FBgn0053868) His2A:CG33865 (FBgn0053865) His3:CG33866 (FBgn0053866) #25 Lamp1 (FBgn0032949) nompB (FBgn0016919) CG2201 (FBgn0032955) Df31 (FBgn0022893) Ac3 (FBgn0023416) Cul2 (FBgn0032956) Fruitfly MODERN SPECIES 16 CG46314 (FBgn0284230) dimm (FBgn0023091) Tsp39D (FBgn0032943) dtr (FBgn0023090) Gr39b (FBgn0041245) CG8665 (FBgn0032945) nrv3 (FBgn0032946) His1:CG33801 (FBgn0053801) His2B:CG33910 (FBgn0053910) His4:CG33909 (FBgn0053909) His3:CG33803 (FBgn0053803) #25 His1:CG31617 (FBgn0051617) His2B:CG17949 (FBgn0061209) His2A:CG31618 (FBgn0051618) His4:CG31611 (FBgn0051611) His3:CG31613 (FBgn0051613) #32 His1:CG33804 (FBgn0053804) His2B:CG33908 (FBgn0053908) His4:CG33907 (FBgn0053907) His3:CG33806 (FBgn0053806) #25 His1:CG33807 (FBgn0053807) His2B:CG33906 (FBgn0053906) His2A:CG33808 (FBgn0053808) His4:CG33905 (FBgn0053905) His3:CG33809 (FBgn0053809) #25 His1:CG33810 (FBgn0053810) His2B:CG33904 (FBgn0053904) His4:CG33903 (FBgn0053903) His3:CG33812 (FBgn0053812) #32 His1:CG33813 (FBgn0053813) His2B:CG33902 (FBgn0053902) Fruitfly MODERN SPECIES 16 His3:CG33824 (FBgn0053824) #32 His1:CG33825 (FBgn0053825) His2B:CG33894 (FBgn0053894) His2A:CG33826 (FBgn0053826) His4:CG33893 (FBgn0053893) His3:CG33827 (FBgn0053827) #25 His1:CG33828 (FBgn0053828) His2B:CG33892 (FBgn0053892) His2A:CG33829 (FBgn0053829) His4:CG33891 (FBgn0053891) His3:CG33830 (FBgn0053830) #25 His1:CG33831 (FBgn0053831) His2B:CG33890 (FBgn0053890) His2A:CG33832 (FBgn0053832) His4:CG33889 (FBgn0053889) His3:CG33833 (FBgn0053833) #32 His1:CG33834 (FBgn0053834) His2B:CG33888 (FBgn0053888) His2A:CG33835 (FBgn0053835) His4:CG33887 (FBgn0053887) His3:CG33836 (FBgn0053836) #25 His1:CG33837 (FBgn0053837) His2B:CG33886 (FBgn0053886) His2A:CG33838 (FBgn0053838) His4:CG33885 (FBgn0053885) His3:CG33839 (FBgn0053839) #25 His1:CG33840 (FBgn0053840) His2B:CG33884 (FBgn0053884) His2A:CG33841 (FBgn0053841) His4:CG33883 (FBgn0053883) His3:CG33842 (FBgn0053842) #32 Fruitfly MODERN SPECIES 16 His3:CG33833 (FBgn0053833) #32 His1:CG33834 (FBgn0053834) His2B:CG33888 (FBgn0053888) His2A:CG33835 (FBgn0053835) His4:CG33887 (FBgn0053887) His3:CG33836 (FBgn0053836) #25 His1:CG33837 (FBgn0053837) His2B:CG33886 (FBgn0053886) His2A:CG33838 (FBgn0053838) His4:CG33885 (FBgn0053885) His3:CG33839 (FBgn0053839) #25 His1:CG33840 (FBgn0053840) His2B:CG33884 (FBgn0053884) His2A:CG33841 (FBgn0053841) His4:CG33883 (FBgn0053883) His3:CG33842 (FBgn0053842) #32 His1:CG33843 (FBgn0053843) His2B:CG33882 (FBgn0053882) His2A:CG33844 (FBgn0053844) His4:CG33881 (FBgn0053881) His3:CG33845 (FBgn0053845) #32 His1:CG33846 (FBgn0053846) His2B:CG33880 (FBgn0053880) His2A:CG33847 (FBgn0053847) His4:CG33879 (FBgn0053879) His3:CG33848 (FBgn0053848) #32 His1:CG33849 (FBgn0053849) His2B:CG33878 (FBgn0053878) His2A:CG33850 (FBgn0053850) His4:CG33877 (FBgn0053877) His3:CG33851 (FBgn0053851) #25 Fruitfly MODERN SPECIES 16 His3:CG33839 (FBgn0053839) #25 His1:CG33840 (FBgn0053840) His2B:CG33884 (FBgn0053884) His2A:CG33841 (FBgn0053841) His4:CG33883 (FBgn0053883) His3:CG33842 (FBgn0053842) #32 His1:CG33843 (FBgn0053843) His2B:CG33882 (FBgn0053882) His2A:CG33844 (FBgn0053844) His4:CG33881 (FBgn0053881) His3:CG33845 (FBgn0053845) #32 His1:CG33846 (FBgn0053846) His2B:CG33880 (FBgn0053880) His2A:CG33847 (FBgn0053847) His4:CG33879 (FBgn0053879) His3:CG33848 (FBgn0053848) #32 His1:CG33849 (FBgn0053849) His2B:CG33878 (FBgn0053878) His2A:CG33850 (FBgn0053850) His4:CG33877 (FBgn0053877) His3:CG33851 (FBgn0053851) #25 His1:CG33852 (FBgn0053852) His2B:CG33876 (FBgn0053876) His2A:CG33853 (FBgn0053853) His4:CG33875 (FBgn0053875) His3:CG33854 (FBgn0053854) #32 His1:CG33855 (FBgn0053855) His2B:CG33874 (FBgn0053874) His2A:CG33856 (FBgn0053856) His4:CG33873 (FBgn0053873) His3:CG33857 (FBgn0053857) #25 Bilateria ANCESTRAL SPECIES 1 ENSGT01060000248528.b ENSGT01100000263559.B #32 ENSGT01100000263569.a.b.b ENSGT00940000164494 ENSGT01060000248528.a.b.a.a.a.b ENSGT01100000263559.A #25 Ecdysozoa ANCESTRAL SPECIES 1 ENSGT01060000248528.b ENSGT01100000263559.B #32 ENSGT01100000263569.a.b.b ENSGT00940000164494 ENSGT01060000248528.a.b.a.a.a.b ENSGT01100000263559.A #25 Fruitfly DUPLICATION Fruitfly MODERN SPECIES 16 His3:CG33848 (FBgn0053848) #32 His1:CG33849 (FBgn0053849) His2B:CG33878 (FBgn0053878) His2A:CG33850 (FBgn0053850) His4:CG33877 (FBgn0053877) His3:CG33851 (FBgn0053851) #25 His1:CG33852 (FBgn0053852) His2B:CG33876 (FBgn0053876) His2A:CG33853 (FBgn0053853) His4:CG33875 (FBgn0053875) His3:CG33854 (FBgn0053854) #32 His1:CG33855 (FBgn0053855) His2B:CG33874 (FBgn0053874) His2A:CG33856 (FBgn0053856) His4:CG33873 (FBgn0053873) His3:CG33857 (FBgn0053857) #25 His1:CG33858 (FBgn0053858) His2B:CG33872 (FBgn0053872) His2A:CG33859 (FBgn0053859) His4:CG33871 (FBgn0053871) His3:CG33860 (FBgn0053860) #32 His1:CG33861 (FBgn0053861) His2B:CG33870 (FBgn0053870) His2A:CG33862 (FBgn0053862) His4:CG33869 (FBgn0053869) His3:CG33863 (FBgn0053863) #32 His1:CG33864 (FBgn0053864) His2B:CG33868 (FBgn0053868) His2A:CG33865 (FBgn0053865) His3:CG33866 (FBgn0053866) #25 Lamp1 (FBgn0032949) Fruitfly DUPLICATION Fruitfly MODERN SPECIES 16 l(2)k14505 (FBgn0021856) CG8671 (FBgn0032938) Mondo (FBgn0032940) Gr39a (FBgn0264556) crc (FBgn0000370) CG46314 (FBgn0284230) dimm (FBgn0023091) Tsp39D (FBgn0032943) dtr (FBgn0023090) Gr39b (FBgn0041245) CG8665 (FBgn0032945) nrv3 (FBgn0032946) His1:CG33801 (FBgn0053801) His2B:CG33910 (FBgn0053910) His4:CG33909 (FBgn0053909) His3:CG33803 (FBgn0053803) #25 His1:CG31617 (FBgn0051617) His2B:CG17949 (FBgn0061209) His2A:CG31618 (FBgn0051618) His4:CG31611 (FBgn0051611) His3:CG31613 (FBgn0051613) #32 His1:CG33804 (FBgn0053804) His2B:CG33908 (FBgn0053908) His4:CG33907 (FBgn0053907) His3:CG33806 (FBgn0053806) #25 His1:CG33807 (FBgn0053807) His2B:CG33906 (FBgn0053906) His2A:CG33808 (FBgn0053808) His4:CG33905 (FBgn0053905) His3:CG33809 (FBgn0053809) #25 His1:CG33810 (FBgn0053810) Fruitfly MODERN SPECIES 16 His3:CG33827 (FBgn0053827) #25 His1:CG33828 (FBgn0053828) His2B:CG33892 (FBgn0053892) His2A:CG33829 (FBgn0053829) His4:CG33891 (FBgn0053891) His3:CG33830 (FBgn0053830) #25 His1:CG33831 (FBgn0053831) His2B:CG33890 (FBgn0053890) His2A:CG33832 (FBgn0053832) His4:CG33889 (FBgn0053889) His3:CG33833 (FBgn0053833) #32 His1:CG33834 (FBgn0053834) His2B:CG33888 (FBgn0053888) His2A:CG33835 (FBgn0053835) His4:CG33887 (FBgn0053887) His3:CG33836 (FBgn0053836) #25 His1:CG33837 (FBgn0053837) His2B:CG33886 (FBgn0053886) His2A:CG33838 (FBgn0053838) His4:CG33885 (FBgn0053885) His3:CG33839 (FBgn0053839) #25 His1:CG33840 (FBgn0053840) His2B:CG33884 (FBgn0053884) His2A:CG33841 (FBgn0053841) His4:CG33883 (FBgn0053883) His3:CG33842 (FBgn0053842) #32 His1:CG33843 (FBgn0053843) His2B:CG33882 (FBgn0053882) His2A:CG33844 (FBgn0053844) His4:CG33881 (FBgn0053881) His3:CG33845 (FBgn0053845) #32 Fruitfly DUPLICATION Fruitfly MODERN SPECIES 16 His4:CG33909 (FBgn0053909) His3:CG33803 (FBgn0053803) #25 His1:CG31617 (FBgn0051617) His2B:CG17949 (FBgn0061209) His2A:CG31618 (FBgn0051618) His4:CG31611 (FBgn0051611) His3:CG31613 (FBgn0051613) #32 His1:CG33804 (FBgn0053804) His2B:CG33908 (FBgn0053908) His4:CG33907 (FBgn0053907) His3:CG33806 (FBgn0053806) #25 His1:CG33807 (FBgn0053807) His2B:CG33906 (FBgn0053906) His2A:CG33808 (FBgn0053808) His4:CG33905 (FBgn0053905) His3:CG33809 (FBgn0053809) #25 His1:CG33810 (FBgn0053810) His2B:CG33904 (FBgn0053904) His4:CG33903 (FBgn0053903) His3:CG33812 (FBgn0053812) #32 His1:CG33813 (FBgn0053813) His2B:CG33902 (FBgn0053902) His2A:CG33814 (FBgn0053814) His4:CG33901 (FBgn0053901) His3:CG33815 (FBgn0053815) #25 His1:CG33816 (FBgn0053816) His2B:CG33900 (FBgn0053900) His2A:CG33817 (FBgn0053817) His4:CG33899 (FBgn0053899) His3:CG33818 (FBgn0053818) #25 His1:CG33819 (FBgn0053819) Fruitfly MODERN SPECIES 16 His3:CG33818 (FBgn0053818) #25 His1:CG33819 (FBgn0053819) His2B:CG33898 (FBgn0053898) His2A:CG33820 (FBgn0053820) His4:CG33897 (FBgn0053897) His3:CG33821 (FBgn0053821) #25 His1:CG33822 (FBgn0053822) His2B:CG33896 (FBgn0053896) His2A:CG33823 (FBgn0053823) His4:CG33895 (FBgn0053895) His3:CG33824 (FBgn0053824) #32 His1:CG33825 (FBgn0053825) His2B:CG33894 (FBgn0053894) His2A:CG33826 (FBgn0053826) His4:CG33893 (FBgn0053893) His3:CG33827 (FBgn0053827) #25 His1:CG33828 (FBgn0053828) His2B:CG33892 (FBgn0053892) His2A:CG33829 (FBgn0053829) His4:CG33891 (FBgn0053891) His3:CG33830 (FBgn0053830) #25 His1:CG33831 (FBgn0053831) His2B:CG33890 (FBgn0053890) His2A:CG33832 (FBgn0053832) His4:CG33889 (FBgn0053889) His3:CG33833 (FBgn0053833) #32 His1:CG33834 (FBgn0053834) His2B:CG33888 (FBgn0053888) His2A:CG33835 (FBgn0053835) His4:CG33887 (FBgn0053887) His3:CG33836 (FBgn0053836) #25 Fruitfly MODERN SPECIES 16 His4:CG33905 (FBgn0053905) His3:CG33809 (FBgn0053809) #25 His1:CG33810 (FBgn0053810) His2B:CG33904 (FBgn0053904) His4:CG33903 (FBgn0053903) His3:CG33812 (FBgn0053812) #32 His1:CG33813 (FBgn0053813) His2B:CG33902 (FBgn0053902) His2A:CG33814 (FBgn0053814) His4:CG33901 (FBgn0053901) His3:CG33815 (FBgn0053815) #25 His1:CG33816 (FBgn0053816) His2B:CG33900 (FBgn0053900) His2A:CG33817 (FBgn0053817) His4:CG33899 (FBgn0053899) His3:CG33818 (FBgn0053818) #25 His1:CG33819 (FBgn0053819) His2B:CG33898 (FBgn0053898) His2A:CG33820 (FBgn0053820) His4:CG33897 (FBgn0053897) His3:CG33821 (FBgn0053821) #25 His1:CG33822 (FBgn0053822) His2B:CG33896 (FBgn0053896) His2A:CG33823 (FBgn0053823) His4:CG33895 (FBgn0053895) His3:CG33824 (FBgn0053824) #32 His1:CG33825 (FBgn0053825) His2B:CG33894 (FBgn0053894) His2A:CG33826 (FBgn0053826) His4:CG33893 (FBgn0053893) His3:CG33827 (FBgn0053827) #25 Fruitfly MODERN SPECIES 16 Gr39b (FBgn0041245) CG8665 (FBgn0032945) nrv3 (FBgn0032946) His1:CG33801 (FBgn0053801) His2B:CG33910 (FBgn0053910) His4:CG33909 (FBgn0053909) His3:CG33803 (FBgn0053803) #25 His1:CG31617 (FBgn0051617) His2B:CG17949 (FBgn0061209) His2A:CG31618 (FBgn0051618) His4:CG31611 (FBgn0051611) His3:CG31613 (FBgn0051613) #32 His1:CG33804 (FBgn0053804) His2B:CG33908 (FBgn0053908) His4:CG33907 (FBgn0053907) His3:CG33806 (FBgn0053806) #25 His1:CG33807 (FBgn0053807) His2B:CG33906 (FBgn0053906) His2A:CG33808 (FBgn0053808) His4:CG33905 (FBgn0053905) His3:CG33809 (FBgn0053809) #25 His1:CG33810 (FBgn0053810) His2B:CG33904 (FBgn0053904) His4:CG33903 (FBgn0053903) His3:CG33812 (FBgn0053812) #32 His1:CG33813 (FBgn0053813) His2B:CG33902 (FBgn0053902) His2A:CG33814 (FBgn0053814) His4:CG33901 (FBgn0053901) His3:CG33815 (FBgn0053815) #25 His1:CG33816 (FBgn0053816) Fruitfly MODERN SPECIES 16 His4:CG33873 (FBgn0053873) His3:CG33857 (FBgn0053857) #25 His1:CG33858 (FBgn0053858) His2B:CG33872 (FBgn0053872) His2A:CG33859 (FBgn0053859) His4:CG33871 (FBgn0053871) His3:CG33860 (FBgn0053860) #32 His1:CG33861 (FBgn0053861) His2B:CG33870 (FBgn0053870) His2A:CG33862 (FBgn0053862) His4:CG33869 (FBgn0053869) His3:CG33863 (FBgn0053863) #32 His1:CG33864 (FBgn0053864) His2B:CG33868 (FBgn0053868) His2A:CG33865 (FBgn0053865) His3:CG33866 (FBgn0053866) #25 Lamp1 (FBgn0032949) nompB (FBgn0016919) CG2201 (FBgn0032955) Df31 (FBgn0022893) Ac3 (FBgn0023416) Cul2 (FBgn0032956) CG2225 (FBgn0032957) eEF2 (FBgn0000559) nolo (FBgn0051619) step (FBgn0086779) CG1416 (FBgn0032961) CG31612 (FBgn0051612) CG11630 (FBgn0032964) tsh (FBgn0003866) CG11629 (FBgn0032965) Fruitfly MODERN SPECIES 16 His3:CG33842 (FBgn0053842) #32 His1:CG33843 (FBgn0053843) His2B:CG33882 (FBgn0053882) His2A:CG33844 (FBgn0053844) His4:CG33881 (FBgn0053881) His3:CG33845 (FBgn0053845) #32 His1:CG33846 (FBgn0053846) His2B:CG33880 (FBgn0053880) His2A:CG33847 (FBgn0053847) His4:CG33879 (FBgn0053879) His3:CG33848 (FBgn0053848) #32 His1:CG33849 (FBgn0053849) His2B:CG33878 (FBgn0053878) His2A:CG33850 (FBgn0053850) His4:CG33877 (FBgn0053877) His3:CG33851 (FBgn0053851) #25 His1:CG33852 (FBgn0053852) His2B:CG33876 (FBgn0053876) His2A:CG33853 (FBgn0053853) His4:CG33875 (FBgn0053875) His3:CG33854 (FBgn0053854) #32 His1:CG33855 (FBgn0053855) His2B:CG33874 (FBgn0053874) His2A:CG33856 (FBgn0053856) His4:CG33873 (FBgn0053873) His3:CG33857 (FBgn0053857) #25 His1:CG33858 (FBgn0053858) His2B:CG33872 (FBgn0053872) His2A:CG33859 (FBgn0053859) His4:CG33871 (FBgn0053871) His3:CG33860 (FBgn0053860) #32 Fruitfly MODERN SPECIES 16 His3:CG33830 (FBgn0053830) #25 His1:CG33831 (FBgn0053831) His2B:CG33890 (FBgn0053890) His2A:CG33832 (FBgn0053832) His4:CG33889 (FBgn0053889) His3:CG33833 (FBgn0053833) #32 His1:CG33834 (FBgn0053834) His2B:CG33888 (FBgn0053888) His2A:CG33835 (FBgn0053835) His4:CG33887 (FBgn0053887) His3:CG33836 (FBgn0053836) #25 His1:CG33837 (FBgn0053837) His2B:CG33886 (FBgn0053886) His2A:CG33838 (FBgn0053838) His4:CG33885 (FBgn0053885) His3:CG33839 (FBgn0053839) #25 His1:CG33840 (FBgn0053840) His2B:CG33884 (FBgn0053884) His2A:CG33841 (FBgn0053841) His4:CG33883 (FBgn0053883) His3:CG33842 (FBgn0053842) #32 His1:CG33843 (FBgn0053843) His2B:CG33882 (FBgn0053882) His2A:CG33844 (FBgn0053844) His4:CG33881 (FBgn0053881) His3:CG33845 (FBgn0053845) #32 His1:CG33846 (FBgn0053846) His2B:CG33880 (FBgn0053880) His2A:CG33847 (FBgn0053847) His4:CG33879 (FBgn0053879) His3:CG33848 (FBgn0053848) #32 Fruitfly MODERN SPECIES 16 His4:CG33907 (FBgn0053907) His3:CG33806 (FBgn0053806) #25 His1:CG33807 (FBgn0053807) His2B:CG33906 (FBgn0053906) His2A:CG33808 (FBgn0053808) His4:CG33905 (FBgn0053905) His3:CG33809 (FBgn0053809) #25 His1:CG33810 (FBgn0053810) His2B:CG33904 (FBgn0053904) His4:CG33903 (FBgn0053903) His3:CG33812 (FBgn0053812) #32 His1:CG33813 (FBgn0053813) His2B:CG33902 (FBgn0053902) His2A:CG33814 (FBgn0053814) His4:CG33901 (FBgn0053901) His3:CG33815 (FBgn0053815) #25 His1:CG33816 (FBgn0053816) His2B:CG33900 (FBgn0053900) His2A:CG33817 (FBgn0053817) His4:CG33899 (FBgn0053899) His3:CG33818 (FBgn0053818) #25 His1:CG33819 (FBgn0053819) His2B:CG33898 (FBgn0053898) His2A:CG33820 (FBgn0053820) His4:CG33897 (FBgn0053897) His3:CG33821 (FBgn0053821) #25 His1:CG33822 (FBgn0053822) His2B:CG33896 (FBgn0053896) His2A:CG33823 (FBgn0053823) His4:CG33895 (FBgn0053895) His3:CG33824 (FBgn0053824) #32 Fruitfly MODERN SPECIES 16 His3:CG33812 (FBgn0053812) #32 His1:CG33813 (FBgn0053813) His2B:CG33902 (FBgn0053902) His2A:CG33814 (FBgn0053814) His4:CG33901 (FBgn0053901) His3:CG33815 (FBgn0053815) #25 His1:CG33816 (FBgn0053816) His2B:CG33900 (FBgn0053900) His2A:CG33817 (FBgn0053817) His4:CG33899 (FBgn0053899) His3:CG33818 (FBgn0053818) #25 His1:CG33819 (FBgn0053819) His2B:CG33898 (FBgn0053898) His2A:CG33820 (FBgn0053820) His4:CG33897 (FBgn0053897) His3:CG33821 (FBgn0053821) #25 His1:CG33822 (FBgn0053822) His2B:CG33896 (FBgn0053896) His2A:CG33823 (FBgn0053823) His4:CG33895 (FBgn0053895) His3:CG33824 (FBgn0053824) #32 His1:CG33825 (FBgn0053825) His2B:CG33894 (FBgn0053894) His2A:CG33826 (FBgn0053826) His4:CG33893 (FBgn0053893) His3:CG33827 (FBgn0053827) #25 His1:CG33828 (FBgn0053828) His2B:CG33892 (FBgn0053892) His2A:CG33829 (FBgn0053829) His4:CG33891 (FBgn0053891) His3:CG33830 (FBgn0053830) #25 Fruitfly MODERN SPECIES 16 His3:CG33821 (FBgn0053821) #25 His1:CG33822 (FBgn0053822) His2B:CG33896 (FBgn0053896) His2A:CG33823 (FBgn0053823) His4:CG33895 (FBgn0053895) His3:CG33824 (FBgn0053824) #32 His1:CG33825 (FBgn0053825) His2B:CG33894 (FBgn0053894) His2A:CG33826 (FBgn0053826) His4:CG33893 (FBgn0053893) His3:CG33827 (FBgn0053827) #25 His1:CG33828 (FBgn0053828) His2B:CG33892 (FBgn0053892) His2A:CG33829 (FBgn0053829) His4:CG33891 (FBgn0053891) His3:CG33830 (FBgn0053830) #25 His1:CG33831 (FBgn0053831) His2B:CG33890 (FBgn0053890) His2A:CG33832 (FBgn0053832) His4:CG33889 (FBgn0053889) His3:CG33833 (FBgn0053833) #32 His1:CG33834 (FBgn0053834) His2B:CG33888 (FBgn0053888) His2A:CG33835 (FBgn0053835) His4:CG33887 (FBgn0053887) His3:CG33836 (FBgn0053836) #25 His1:CG33837 (FBgn0053837) His2B:CG33886 (FBgn0053886) His2A:CG33838 (FBgn0053838) His4:CG33885 (FBgn0053885) His3:CG33839 (FBgn0053839) #25 Chordata ANCESTRAL SPECIES 1 ENSGT01060000248528.b ENSGT01100000263559.B #32 ENSGT01100000263569.a.b.b ENSGT00940000164494 ENSGT01060000248528.a.b.a.a.a.b ENSGT01100000263559.A #25 Vertebrata ANCESTRAL SPECIES 35 ENSGT01100000263559.A #25 ENSGT00940000153118 ENSGT01100000263506.a #14 ENSGT00990000203553.c.a.b #10 ENSGT01020000230360.d ##31 Cyclostomata ANCESTRAL SPECIES 106 ENSGT01100000263559.A #25 ENSGT00940000153118 ENSGT01100000263506.a #14 ENSGT00990000203553.c.a.b #10 Hagfish MODERN SPECIES 537 ENSEBUG00000016453 ufc1 (ENSEBUG00000008476) ENSEBUG00000011407 ENSEBUG00000014353 ENSEBUG00000011594 abcf1 (ENSEBUG00000011670) ENSEBUG00000009631 ENSEBUG00000004646 ENSEBUG00000010053 ENSEBUG00000012130 ##31 ENSEBUG00000012893 #26 ENSEBUG00000008558 ##35 ENSEBUG00000005707 #37 ENSEBUG00000002583 #37 ENSEBUG00000010425 #10 ENSEBUG00000006840 #25 ENSEBUG00000001051 ENSEBUG00000000947 ENSEBUG00000012198 pgm2 (ENSEBUG00000002702) MTM1 (ENSEBUG00000009767) lias (ENSEBUG00000016449) ugdh (ENSEBUG00000007773) ENSEBUG00000009422 ENSEBUG00000011486 bbs7 (ENSEBUG00000001399) ENSEBUG00000006773 ENSEBUG00000001530 mab21l2 (ENSEBUG00000007268) ENSEBUG00000006545 Gnathostomata ANCESTRAL SPECIES 345 ENSGT01060000248528.b ENSGT01100000263559.B #32 ENSGT01100000263569.a.b.b ENSGT00940000164494 ENSGT01060000248528.a.b.a.a.a.b ENSGT01100000263559.A #25 ENSGT00940000153118 ENSGT01100000263506.a #14 ENSGT00990000203553.c.a.b #10 ENSGT01020000230360.d ##31 Euteleostomi ANCESTRAL SPECIES 942 ENSGT00940000162950 ENSGT01100000263559.A #25 ENSGT00940000153118 Sarcopterygii ANCESTRAL SPECIES 284 ENSGT00990000203553.c.a.a.a.b ##28 ENSGT01100000263474.a.b.b ##36 ENSGT00950000183089 #37 ENSGT01100000263514.A.f ENSGT01100000263559.B #32 ENSGT01100000263569.a.b.b ENSGT00940000164494 ENSGT01060000248528.a.b.a.a.a.b ENSGT01100000263559.A #25 ENSGT00940000153118 ENSGT00940000153092 ENSGT01100000263504.a.b.b.b.b ENSGT01100000263474.a.b.a #36 ENSGT01100000263504.a.b.b.b.a.a Tetrapoda ANCESTRAL SPECIES 133 ENSGT01020000230360.c.b.a.b.b.d ##31 ENSGT01100000263474.a.a ##36 ENSGT01100000263514.A.e.a ENSGT01060000248528.b.jh.b ENSGT01100000263474.a.b.a.d #36 ENSGT01060000248528.b.jh.a ENSGT01100000263559.B #32 ENSGT00950000183089 #37 ENSGT01100000263514.A.f ENSGT01100000263504.b ENSGT01100000263569.a.b.b ENSGT00940000164494 ENSGT01060000248528.a.b.a.a.a.b ENSGT01100000263559.A #25 ENSGT00940000153118 ENSGT01100000263474.a.b.b ##36 ENSGT01060000248528.b.kh ENSGT01100000263506.a #14 ENSGT01100000263567.a.a #35 ENSGT00940000155501.b ENSGT01100000263474.a.b.a.c.a #36 ENSGT01100000263504.a.b.b.b.b ENSGT00940000153092 Anura DUPLICATION Anura DUPLICATION Anura ANCESTRAL SPECIES ENSGT01100000263559.A.c.a #25 Frog MODERN SPECIES 3 dnajb1 (ENSXETG00000020601) tecr (ENSXETG00000020594) ENSXETG00000020592 colgalt1 (ENSXETG00000020570) ENSXETG00000043783 znf333 (ENSXETG00000028016) pgls (ENSXETG00000038389) nxnl1 (ENSXETG00000044461) gmip (ENSXETG00000020566) lpar2 (ENSXETG00000020627) ubl5 (ENSXETG00000026973) ENSXETG00000045421 ##28 ENSXETG00000045363 h4c3 (ENSXETG00000042164) ENSXETG00000047471 #37 h3c14 (ENSXETG00000041525) #25 ENSXETG00000040201 ENSXETG00000043306 ENSXETG00000048561 ##36 ENSXETG00000042408 ENSXETG00000042790 ENSXETG00000045640 #37 h3c14 (ENSXETG00000042473) #25 h2bc11 (ENSXETG00000039549) ##36 ENSXETG00000048994 h3c14 (ENSXETG00000046975) #25 ENSXETG00000049375 ENSXETG00000043592 #37 ENSXETG00000034713 h3c14 (ENSXETG00000044528) #25 h3c14 (ENSXETG00000044611) #32 Anura ANCESTRAL SPECIES ENSGT01100000263559.A.c.b #25 Leishan spiny toad MODERN SPECIES 1610 ENSLLEG00000027239 #25 Frog MODERN SPECIES 9 ENSXETG00000049253 h2ac21 (ENSXETG00000043529) ENSXETG00000038839 ENSXETG00000047959 ENSXETG00000049129 ##36 ENSXETG00000043641 h3c14 (ENSXETG00000048174) #25 ENSXETG00000046935 ENSXETG00000049087 ENSXETG00000035076 ENSXETG00000040458 ENSXETG00000011624 znf853 (ENSXETG00000042893) ENSXETG00000045236 ENSXETG00000037824 #37 h3c14 (ENSXETG00000042474) #25 h2ac21 (ENSXETG00000042518) ENSXETG00000041947 ##36 ENSXETG00000027149 ENSXETG00000040427 ENSXETG00000044820 ENSXETG00000042053 ENSXETG00000043683 ENSXETG00000044933 ENSXETG00000041075 ENSXETG00000048340 ENSXETG00000047710 ENSXETG00000047112 ENSXETG00000044290 ENSXETG00000048002 ENSXETG00000048576 Anura ANCESTRAL SPECIES 306 ENSGT01100000263559.A.d #25 ENSGT01100000263559.B #32 ENSGT01060000248528.b.kh ENSGT01100000263474.a.b.b ##36 ENSGT00940000153118 ENSGT00950000183089 #37 ENSGT01060000248528.b.jh.b ENSGT01100000263567.a.b ##35 Frog DUPLICATION Frog MODERN SPECIES 6 ENSXETG00000038509 ENSXETG00000040940 ENSXETG00000042877 ENSXETG00000036048 ENSXETG00000040272 ENSXETG00000041032 ENSXETG00000034208 ENSXETG00000036602 ENSXETG00000039026 ENSXETG00000042118 ENSXETG00000048738 ENSXETG00000015072 ENSXETG00000043707 ENSXETG00000043946 ##36 ENSXETG00000046691 h3c14 (ENSXETG00000048312) #25 ENSXETG00000046137 ENSXETG00000034769 ENSXETG00000038547 ENSXETG00000038815 ENSXETG00000037772 ENSXETG00000045349 ENSXETG00000038247 ENSXETG00000044197 ENSXETG00000043861 ENSXETG00000048099 ENSXETG00000041726 ENSXETG00000046906 ENSXETG00000047261 ENSXETG00000044381 ENSXETG00000035851 Frog MODERN SPECIES 3 h3c14 (ENSXETG00000044910) #32 h3c14 (ENSXETG00000044354) #32 ENSXETG00000048482 ##36 ENSXETG00000045042 #37 ENSXETG00000046881 ##35 ENSXETG00000044704 ENSXETG00000048427 ENSXETG00000043134 #37 ENSXETG00000046040 h2ac12 (ENSXETG00000048231) h3c14 (ENSXETG00000044611) #32 h3c14 (ENSXETG00000044528) #25 ENSXETG00000034713 ENSXETG00000043592 #37 ENSXETG00000049375 h3c14 (ENSXETG00000046975) #25 ENSXETG00000048994 h2bc11 (ENSXETG00000039549) ##36 h3c14 (ENSXETG00000042473) #25 ENSXETG00000045640 #37 ENSXETG00000042790 ENSXETG00000042408 ENSXETG00000048561 ##36 ENSXETG00000043306 ENSXETG00000040201 h3c14 (ENSXETG00000041525) #25 ENSXETG00000047471 #37 h4c3 (ENSXETG00000042164) ENSXETG00000045363 ENSXETG00000045421 ##28 ubl5 (ENSXETG00000026973) Frog MODERN SPECIES 6 ENSXETG00000045159 ENSXETG00000043919 ENSXETG00000044932 ENSXETG00000037756 ENSXETG00000044695 XB5896327 [provisional:trim25] (ENSXETG00000031315) ENSXETG00000003407 ENSXETG00000042609 ENSXETG00000018403 ENSXETG00000037506 ENSXETG00000047410 ENSXETG00000045929 ##36 ENSXETG00000047380 h3c14 (ENSXETG00000043383) #32 ENSXETG00000041056 #37 h3c14 (ENSXETG00000041419) #25 ENSXETG00000045612 ##36 h3c14 (ENSXETG00000046180) #32 ENSXETG00000048401 ENSXETG00000042804 #31 ENSXETG00000045736 ##36 ENSXETG00000049063 ENSXETG00000046114 ENSXETG00000043740 ##36 ENSXETG00000037819 ENSXETG00000045718 ENSXETG00000042142 ENSXETG00000040222 ENSXETG00000039120 ENSXETG00000046964 ENSXETG00000048915 Frog MODERN SPECIES 3 ENSXETG00000047471 #37 h3c14 (ENSXETG00000041525) #25 ENSXETG00000040201 ENSXETG00000043306 ENSXETG00000048561 ##36 ENSXETG00000042408 ENSXETG00000042790 ENSXETG00000045640 #37 h3c14 (ENSXETG00000042473) #25 h2bc11 (ENSXETG00000039549) ##36 ENSXETG00000048994 h3c14 (ENSXETG00000046975) #25 ENSXETG00000049375 ENSXETG00000043592 #37 ENSXETG00000034713 h3c14 (ENSXETG00000044528) #25 h3c14 (ENSXETG00000044611) #32 h2ac12 (ENSXETG00000048231) ENSXETG00000046040 ENSXETG00000043134 #37 ENSXETG00000048427 ENSXETG00000044704 ENSXETG00000046881 ##35 ENSXETG00000045042 #37 ENSXETG00000048482 ##36 h3c14 (ENSXETG00000044354) #32 h3c14 (ENSXETG00000044910) #32 ENSXETG00000045405 ENSXETG00000048747 ENSXETG00000047630 #37 ENSXETG00000045293 Frog DUPLICATION Frog MODERN SPECIES 9 h2ac21 (ENSXETG00000044601) ENSXETG00000046168 h3c14 (ENSXETG00000044638) #32 ENSXETG00000047553 #37 h2ac21 (ENSXETG00000048013) ENSXETG00000048370 ENSXETG00000042414 ENSXETG00000043274 ENSXETG00000024252 #37 ENSXETG00000049253 h2ac21 (ENSXETG00000043529) ENSXETG00000038839 ENSXETG00000047959 ENSXETG00000049129 ##36 ENSXETG00000043641 h3c14 (ENSXETG00000048174) #25 ENSXETG00000046935 ENSXETG00000049087 ENSXETG00000035076 ENSXETG00000040458 ENSXETG00000011624 znf853 (ENSXETG00000042893) ENSXETG00000045236 ENSXETG00000037824 #37 h3c14 (ENSXETG00000042474) #25 h2ac21 (ENSXETG00000042518) ENSXETG00000041947 ##36 ENSXETG00000027149 ENSXETG00000040427 ENSXETG00000044820 ENSXETG00000042053 Frog MODERN SPECIES 9 ENSXETG00000035139 znf208 (ENSXETG00000040368) ENSXETG00000033264 ENSXETG00000048309 nlk.2 (ENSXETG00000046767) ENSXETG00000048868 ENSXETG00000048548 tnfrsf12a (ENSXETG00000048784) b2m (ENSXETG00000033246) trim72 (ENSXETG00000034870) ENSXETG00000038188 ENSXETG00000040750 ENSXETG00000044796 ENSXETG00000043427 ##36 ENSXETG00000038302 #37 h3c14 (ENSXETG00000042734) #25 ENSXETG00000044502 ENSXETG00000034552 ENSXETG00000042925 ENSXETG00000049291 #37 h2ac21 (ENSXETG00000044100) h3c14 (ENSXETG00000044526) #32 ENSXETG00000046306 pycard (ENSXETG00000036975) ENSXETG00000038422 ENSXETG00000034437 ENSXETG00000038074 ENSXETG00000043862 bcl7c (ENSXETG00000036060) ENSXETG00000036989 ZNF646 (ENSXETG00000036016) Frog MODERN SPECIES 3 nxnl1 (ENSXETG00000044461) gmip (ENSXETG00000020566) lpar2 (ENSXETG00000020627) ubl5 (ENSXETG00000026973) ENSXETG00000045421 ##28 ENSXETG00000045363 h4c3 (ENSXETG00000042164) ENSXETG00000047471 #37 h3c14 (ENSXETG00000041525) #25 ENSXETG00000040201 ENSXETG00000043306 ENSXETG00000048561 ##36 ENSXETG00000042408 ENSXETG00000042790 ENSXETG00000045640 #37 h3c14 (ENSXETG00000042473) #25 h2bc11 (ENSXETG00000039549) ##36 ENSXETG00000048994 h3c14 (ENSXETG00000046975) #25 ENSXETG00000049375 ENSXETG00000043592 #37 ENSXETG00000034713 h3c14 (ENSXETG00000044528) #25 h3c14 (ENSXETG00000044611) #32 h2ac12 (ENSXETG00000048231) ENSXETG00000046040 ENSXETG00000043134 #37 ENSXETG00000048427 ENSXETG00000044704 ENSXETG00000046881 ##35 ENSXETG00000045042 #37 Leishan spiny toad DUPLICATION Leishan spiny toad MODERN SPECIES 694 ENSLLEG00000022803 ##36 ENSLLEG00000022821 ENSLLEG00000022847 #25 ENSLLEG00000022868 ENSLLEG00000022893 #37 Leishan spiny toad MODERN SPECIES 1311 ENSLLEG00000028374 #25 ENSLLEG00000028360 #28 Amniota DUPLICATION Amniota DUPLICATION Amniota ANCESTRAL SPECIES 103 ENSGT00940000153125.D ENSGT01100000263506.a #14 ENSGT01060000248528.b.kh ENSGT01100000263474.a.b.b ##36 ENSGT00940000153118.db.a.a.b.a.a ENSGT01100000263559.A.e.a #25 ENSGT01060000248528.b.jh.a.a.b ENSGT01100000263474.a.b.a.d #36 ENSGT01060000248528.b.jh.b ENSGT01100000263514.A.e.a ENSGT01060000248528.b.jh.a.b ENSGT01100000263504.a.b.b.b.b ENSGT01100000263514.A.f ENSGT00950000183089 #37 ENSGT00940000153118.db.a.a.a Mammalia ANCESTRAL SPECIES 123 ENSGT01100000263559.A.e.a #25 ENSGT01060000248528.b.jh.a.a.b ENSGT01100000263474.a.b.a.d #36 ENSGT01060000248528.b.jh.b ENSGT01100000263514.A.e.a ENSGT01060000248528.b.jh.a.b ENSGT01100000263504.a.b.b.b.b ENSGT00940000153092.a.b ENSGT00940000153125.D ENSGT01100000263506.a.e.a #14 ENSGT01060000248528.b.kh ENSGT01100000263474.a.b.b ##36 ENSGT00940000153092.a.a ENSGT01100000263559.A.f #25 ENSGT00940000153118.db.b Theria ANCESTRAL SPECIES 69 ENSGT01100000263559.A.e.a #25 ENSGT01060000248528.b.jh.a.a.b ENSGT01100000263474.a.b.a.d #36 ENSGT01060000248528.b.jh.b ENSGT01100000263514.A.e.a ENSGT01060000248528.b.jh.a.b ENSGT01100000263504.a.b.b.b.b ENSGT00940000160426 ENSGT01100000263575.A ENSGT00940000153125.D ENSGT01100000263506.a.e.a #14 ENSGT01060000248528.b.kh ENSGT01100000263474.a.b.b ##36 ENSGT00940000153092.a.a ENSGT01100000263559.A.f #25 ENSGT01100000263575.B Eutheria ANCESTRAL SPECIES 54 ENSGT01100000263559.A.e.a #25 ENSGT01060000248528.b.jh.a.a.b ENSGT01100000263474.a.b.a.d #36 ENSGT01060000248528.b.jh.b ENSGT01100000263567.a.a #35 ENSGT01100000263506.a.e.a.a.a.b.b.a #14 Boreoeutheria ANCESTRAL SPECIES 7 ENSGT00940000162941 ENSGT00940000153104.e.b.a.b ENSGT00940000153253.b.a.h ENSGT00940000160281 ENSGT00940000153125.C ENSGT01100000263506.a.e.a.a.a.a.b.b #14 ENSGT01100000263474.a.b.b.f ##36 ENSGT00940000153125.D.a.b ENSGT01100000263506.a.e.a.a.a.b.b.b #14 ENSGT00940000162956 ENSGT00390000002062 ENSGT00950000182802.B.a.a.b ENSGT00940000161530 ENSGT00940000158017 ENSGT00940000162723 ENSGT01100000263559.A.e.a #25 ENSGT01060000248528.b.jh.a.a.b ENSGT01100000263474.a.b.a.d #36 ENSGT01060000248528.b.jh.b ENSGT01100000263514.A.e.a.b.a.b.a.a.b ENSGT01100000263514.A.e.a.b.a.a ENSGT00940000160426 ENSGT01100000263506.a.e.a.a.a.b.a.a.b.a.b.b #14 ENSGT01100000263506.a.e.a.a.a.b.a.a.b.b #14 ENSGT00940000153118.db.a.b ENSGT01100000263474.a.b.b.e.a.a.b ##36 ENSGT01100000263506.a.e.a.a.a.b.a.a.b.a.a #14 ENSGT00940000163525 ENSGT01100000263517.b.d.m.a.a.b ENSGT00940000163082 ENSGT01100000263514.A.e.a.b.a.b.a.b Laurasiatheria ANCESTRAL SPECIES 7 ENSGT00940000160281 ENSGT00940000153125.A ENSGT00940000153125.B ENSGT00940000153125.E.c.a.b.a.b ENSGT01100000263474.a.b.b.e.a.a.a.b ##36 ENSGT00940000162950 ENSGT01100000263514.A.e.a.b.a.b.a.a.a.b.a.a.a.a ENSGT00940000153125.E.c.b ENSGT01100000263506.a.e.a.a.a.b.b.b #14 ENSGT00940000162956 ENSGT00390000002062 ENSGT00950000182802.B.a.a.b ENSGT00940000161530 ENSGT00940000158017 ENSGT00940000162723 ENSGT01100000263559.A.e.a #25 ENSGT01060000248528.b.jh.a.a.b ENSGT01100000263474.a.b.a.d #36 ENSGT01060000248528.b.jh.a.b ENSGT01100000263504.a.b.b.b.b ENSGT00940000153092.a.a.d ENSGT01100000263506.a.f.b #14 ENSGT00940000153125.D.a.a ENSGT01100000263474.a.b.b.e.a.a.a.a ##36 ENSGT00940000155501.a.a ENSGT00940000153092.a.b.f ENSGT01100000263506.a.e.a.a.a.b.a.a.b.a.b.a.a.a #14 ENSGT00940000163525 ENSGT01100000263517.b.d.m.a.a.b ENSGT00940000163082 ENSGT01100000263514.A.e.a.b.a.b.a.b Laurasiatheria_a ANCESTRAL SPECIES 7 ENSGT00940000161926 ENSGT00940000160468 ENSGT00940000163269 ENSGT01100000263514.A.e.a.b.a.b.a.b ENSGT00940000163082 ENSGT01100000263517.b.d.m.a.a.b ENSGT00940000163525 ENSGT01100000263506.a.e.a.a.a.b.a.a.b.a.b.a.a.a #14 ENSGT00940000153092.a.b.f ENSGT00940000155501.a.a ENSGT01100000263474.a.b.b.e.a.a.a.b ##36 ENSGT00940000162950 ENSGT01100000263514.A.e.a.b.a.b.a.a.a.b.a.a.a.a ENSGT00940000153125.E.c.b ENSGT01100000263506.a.e.a.a.a.b.a.a.a #14 ENSGT01100000263559.A.e.a #25 ENSGT01060000248528.b.jh.a.a.b ENSGT01100000263474.a.b.a.d #36 ENSGT01060000248528.b.jh.a.b ENSGT00940000163036 ENSGT00940000162723 ENSGT00940000158017 ENSGT00940000161530 ENSGT00950000182802.B.a.a.b ENSGT00390000002062 ENSGT01090000259995.b.a.a.a.a.b ENSGT00940000162956 ENSGT01100000263506.a.e.a.a.a.b.b.b #14 ENSGT00940000153125.D.a.b ENSGT01100000263506.a.e.a.a.a.a.b.b #14 ENSGT00940000153125.C Laurasiatheria_b ANCESTRAL SPECIES ENSGT00390000005869.a ENSGT00390000012355.B.b ENSGT01060000248645 ENSGT00940000158522 ENSGT00950000183112.b.b ENSGT00420000029746.f ENSGT00950000183190.a.b.a.b ENSGT01050000244808.A.b.b.a ENSGT01100000263506.a.e.b #14 ENSGT00940000153125.B ENSGT01100000263506.a.e.a.a.a.a.b.b #14 ENSGT00940000153125.E.c.b ENSGT01100000263514.A.e.a.b.a.b.a.a.a.b.a.b ENSGT00940000153125.C ENSGT01100000263506.a.e.a.a.a.a.b.a #14 ENSGT01100000263559.A.e.a #25 ENSGT01060000248528.b.jh.a.a.b ENSGT01100000263506.a.e.a.a.b.a #14 ENSGT00940000153092.a.a.c.a.a ENSGT01100000263514.A.e.a.b.a.b.a.a.a.b.a.a.a.a ENSGT01100000263514.A.e.a.b.b ENSGT01100000263514.A.e.a.b.a.b.a.a.b ENSGT00940000155501.a.b ENSGT01060000248528.b.jh.b ENSGT01100000263506.a.e.a.a.a.b.a.a.a #14 ENSGT00990000203553.c.a.b #10 ENSGT01100000263504.a.b.b.b.b ENSGT00940000153092.a.a.c.a.b ENSGT01100000263575.A ENSGT00940000153118.db.a.a.b.a.a ENSGT00940000153118.db.a.a.b.a.b Carnivora ANCESTRAL SPECIES 4 ENSGT01100000263514.A.e.a.b.a.b.a.a.a.b.a.b ENSGT00940000153125.E.c.b ENSGT01100000263506.a.e.a.a.a.a.a #14 ENSGT00940000162941 ENSGT00940000153104.e.b.a.b ENSGT00940000153104.e.a.a.a.a.b ENSGT00960000186612.A ENSGT00940000153253.b.a.h ENSGT00940000160281 ENSGT00940000162956 ENSGT00390000002062 ENSGT00950000182802.B.a.a.b ENSGT00940000161530 ENSGT00940000164101.a ENSGT00940000158017 ENSGT01100000263559.A.e.a #25 ENSGT01060000248528.b.jh.a.a.b ENSGT01100000263506.a.e.a.a.b.a #14 ENSGT00940000153092.a.a.c.a.a ENSGT01100000263514.A.e.a.b.a.b.a.a.a.b.a.a.a.a ENSGT00940000162950 ENSGT00940000153125.E.c.a.b.b ENSGT00940000153092.a.b.e.a.b ENSGT01100000263506.a.e.a.a.a.b.a.a.b.a.b.a.a.a #14 ENSGT00940000163525 ENSGT01060000248528.b.kh.yb.c.a ENSGT01100000263517.b.d.m.a.a.b ENSGT00940000163082 ENSGT01100000263514.A.e.a.b.a.b.a.a.a.b.a.a.a.b ENSGT00940000160426 ENSGT01100000263514.A.e.a.a Caniformia ANCESTRAL SPECIES 64 ENSGT01100000263559.A.e.a #25 ENSGT01060000248528.b.jh.a.a.b ENSGT01100000263506.a.e.a.a.b.a #14 Canidae ANCESTRAL SPECIES 98 ENSGT01100000263559.A.e.a #25 ENSGT01060000248528.b.jh.a.a.b ENSGT01100000263506.a.e.a.a.b.a #14 Canis_lupus ANCESTRAL SPECIES 77 ENSGT01100000263559.A.e.a #25 ENSGT01060000248528.b.jh.a.a.b ENSGT01100000263506.a.e.a.a.b.a #14 Dingo MODERN SPECIES 105 ENSCAFG00020002442 ENSCAFG00020002427 #14 ENSCAFG00020002414 ENSCAFG00020002410 #15 ENSCAFG00020002406 ##28 ENSCAFG00020002391 ENSCAFG00020002389 ENSCAFG00020002379 #35 ENSCAFG00020002376 ENSCAFG00020002372 ENSCAFG00020002370 ENSCAFG00020002346 ENSCAFG00020002320 #14 ENSCAFG00020002317 #14 ENSCAFG00020002300 ENSCAFG00020002297 #25 ENSCAFG00020002288 ENSCAFG00020002275 #14 Dog MODERN SPECIES 28 ENSCAFG00845014956 H4C4 (ENSCAFG00845014934) ENSCAFG00845014926 ENSCAFG00845026304 ENSCAFG00845026281 #14 H3C8 (ENSCAFG00845026258) ENSCAFG00845026235 ##28 ENSCAFG00845026211 H2AC9 (ENSCAFG00845026196) H3C8 (ENSCAFG00845026157) ENSCAFG00845026145 H4C4 (ENSCAFG00845026120) ENSCAFG00845026093 #14 ENSCAFG00845026065 #14 ENSCAFG00845026022 H3C4 (ENSCAFG00845026004) #25 ENSCAFG00845025978 #14 ENSCAFG00845025954 ENSCAFG00845025910 #14 ENSCAFG00845025893 #14 H1-4 (ENSCAFG00845025875) H2AC6 (ENSCAFG00845025853) H2BC4 (ENSCAFG00845025831) #14 H1-6 (ENSCAFG00845025774) H4C4 (ENSCAFG00845025757) HFE (ENSCAFG00845025572) H1-2 (ENSCAFG00845025540) H3C8 (ENSCAFG00845025523) ENSCAFG00845025509 ENSCAFG00845025494 ENSCAFG00845025482 Laurasiatheria_c ANCESTRAL SPECIES ENSGT01100000263559.A.e.a #25 Chiroptera ANCESTRAL SPECIES ENSGT01100000263559.A.e.a #25 Megabat MODERN SPECIES 6297 H3-7 (ENSPVAG00000009054) #25 ENSPVAG00000024162 #14 Artiodactyla ANCESTRAL SPECIES ENSGT01100000263559.A.e.a #25 Artiodactyla_a ANCESTRAL SPECIES ENSGT01100000263559.A.e.a #25 Artiodactyla_b ANCESTRAL SPECIES ENSGT01100000263559.A.e.a #25 Pecora ANCESTRAL SPECIES ENSGT01100000263559.A.e.a #25 Percora_a ANCESTRAL SPECIES ENSGT01100000263559.A.e.a #25 Bovidae ANCESTRAL SPECIES ENSGT01100000263559.A.e.a #25 Bovinae ANCESTRAL SPECIES ENSGT01100000263559.A.e.a #25 American bison MODERN SPECIES 3032 VPS45 (ENSBBBG00000023405) OTUD7B (ENSBBBG00000023362) MTMR11 (ENSBBBG00000023347) ENSBBBG00000006102 SV2A (ENSBBBG00000023321) ENSBBBG00000023289 ENSBBBG00000023283 H2AC21 (ENSBBBG00000023276) H2AC20 (ENSBBBG00000023272) H2BC21 (ENSBBBG00000008849) ENSBBBG00000008681 #25 ENSBBBG00000023258 ENSBBBG00000023255 #14 ENSBBBG00000006078 #14 ENSBBBG00000023206 ENSBBBG00000023201 #25 H4C15 (ENSBBBG00000023197) H3C13 (ENSBBBG00000023194) #32 H2BC18 (ENSBBBG00000023192) #14 FCGR1A (ENSBBBG00000023183) ENSBBBG00000000326 ENSBBBG00000000337 Euarchontoglires ANCESTRAL SPECIES ENSGT01100000263559.A.e.a #25 Euarchontoglires_A ANCESTRAL SPECIES ENSGT01100000263559.A.e.a #25 Glires ANCESTRAL SPECIES ENSGT01100000263559.A.e.a #25 Lagomorpha ANCESTRAL SPECIES ENSGT01100000263559.A.e.a #25 Rabbit MODERN SPECIES 480 ENSOCUG00000025659 ENSOCUG00000035450 ENSOCUG00000036679 ENSOCUG00000025297 ENSOCUG00000033277 ENSOCUG00000022565 #14 ENSOCUG00000000517 OR2B6 (ENSOCUG00000032955) ENSOCUG00000024185 ENSOCUG00000027137 ENSOCUG00000009364 ENSOCUG00000009368 IRF4 (ENSOCUG00000009374) EXOC2 (ENSOCUG00000016342) ENSOCUG00000033057 ENSOCUG00000022524 #25 FOXF2 (ENSOCUG00000013970) Marsupialia ANCESTRAL SPECIES ENSGT01100000263559.A.e.a #25 Marsupialia_b ANCESTRAL SPECIES ENSGT01100000263559.A.e.a #25 Diprotodontia ANCESTRAL SPECIES ENSGT01100000263559.A.e.a #25 Wallaby MODERN SPECIES 11650 ENSMEUG00000002909 #25 Sauria ANCESTRAL SPECIES ENSGT01100000263559.A.e.a #25 Archelosauria ANCESTRAL SPECIES 276 ENSGT01100000263474.a.b.a.d #36 ENSGT01100000263559.A.e.a #25 Archosauria ANCESTRAL SPECIES 256 ENSGT01100000263474.a.b.a.d #36 ENSGT01100000263559.A.e.a #25 Aves ANCESTRAL SPECIES ENSGT01100000263559.A.e.a #25 Neognathae ANCESTRAL SPECIES ENSGT01100000263559.A.e.a #25 Neognathae_b ANCESTRAL SPECIES ENSGT01100000263559.A.e.a #25 Passeriformes ANCESTRAL SPECIES ENSGT01100000263559.A.e.a #25 Passeriformes_d ANCESTRAL SPECIES ENSGT01100000263559.A.e.a #25 Passeriformes_g ANCESTRAL SPECIES ENSGT01100000263559.A.e.a #25 Medium ground finch MODERN SPECIES 37 UBN2 (ENSGFOG00000008400) TTC26 (ENSGFOG00000008439) GUCY2C (ENSGFOG00000008452) PLBD1 (ENSGFOG00000008507) ATF7IP (ENSGFOG00000008511) GRIN2B (ENSGFOG00000008528) EMP1 (ENSGFOG00000008577) GSG1 (ENSGFOG00000008582) FAM234B (ENSGFOG00000008588) ENSGFOG00000008599 ENSGFOG00000008604 DDX47 (ENSGFOG00000008615) APOLD1 (ENSGFOG00000008914) ENSGFOG00000008918 ENSGFOG00000008922 ##36 ENSGFOG00000008928 #25 ENSGFOG00000008931 #25 African ostrich MODERN SPECIES 704 ENSSCUG00000015276 #25 ENSSCUG00000015279 ##36 H2AJ (ENSSCUG00000015281) ENSSCUG00000015285 ##36 ENSSCUG00000015288 ENSSCUG00000015291 #37 ENSSCUG00000015293 ##36 ENSSCUG00000015296 ENSSCUG00000015299 ##36 ENSSCUG00000015302 ENSSCUG00000015307 #10 ENSSCUG00000015310 ##36 ENSSCUG00000015314 #25 ENSSCUG00000015316 ENSSCUG00000015319 ENSSCUG00000015324 Australian saltwater crocodile MODERN SPECIES 49 ENSCPRG00005001184 #37 ENSCPRG00005001187 ENSCPRG00005001190 CYREN (ENSCPRG00005001194) TMEM140 (ENSCPRG00005001200) PDE6H (ENSCPRG00005001242) ARHGDIB (ENSCPRG00005001246) ERP27 (ENSCPRG00005001254) MGP (ENSCPRG00005001264) ENSCPRG00005001269 ART4 (ENSCPRG00005001272) SMCO3 (ENSCPRG00005001273) ENSCPRG00005001276 ENSCPRG00005001281 ENSCPRG00005001286 #36 H3-7 (ENSCPRG00005001288) #25 ENSCPRG00005001292 ##36 H2AC1 (ENSCPRG00005001293) ENSCPRG00005001296 APOLD1 (ENSCPRG00005001334) DDX47 (ENSCPRG00005001338) ENSCPRG00005001344 HEBP1 (ENSCPRG00005001346) FAM234B (ENSCPRG00005001352) GSG1 (ENSCPRG00005001410) EMP1 (ENSCPRG00005001411) GRIN2B (ENSCPRG00005001484) ENSCPRG00005001524 PLBD1 (ENSCPRG00005001525) ENSCPRG00005001527 GUCY2C (ENSCPRG00005001550) Amniota ANCESTRAL SPECIES 327 ENSGT01100000263559.A.e.b #25 ENSGT00940000153118.db.a.a.b.a.b Mammalia ANCESTRAL SPECIES ENSGT01100000263559.A.e.b #25 Theria ANCESTRAL SPECIES ENSGT01100000263559.A.e.b #25 Marsupialia ANCESTRAL SPECIES ENSGT01100000263559.A.e.b #25 Marsupialia_b ANCESTRAL SPECIES ENSGT01100000263559.A.e.b #25 Diprotodontia ANCESTRAL SPECIES ENSGT01100000263559.A.e.b #25 Wallaby MODERN SPECIES 13336 ENSMEUG00000005042 #25 Eutheria ANCESTRAL SPECIES ENSGT01100000263559.A.e.b #25 Boreoeutheria ANCESTRAL SPECIES ENSGT01100000263559.A.e.b #25 Euarchontoglires ANCESTRAL SPECIES ENSGT01100000263559.A.e.b #25 Euarchontoglires_A ANCESTRAL SPECIES ENSGT01100000263559.A.e.b #25 Glires ANCESTRAL SPECIES ENSGT01100000263559.A.e.b #25 Rodentia ANCESTRAL SPECIES ENSGT01100000263559.A.e.b #25 Rodentia_B ANCESTRAL SPECIES ENSGT01100000263559.A.e.b #25 Myomorpha ANCESTRAL SPECIES ENSGT01100000263559.A.e.b #25 Muroidea ANCESTRAL SPECIES ENSGT01100000263559.A.e.b #25 Muroidea_A ANCESTRAL SPECIES ENSGT01100000263559.A.e.b #25 Murinae ANCESTRAL SPECIES ENSGT01100000263559.A.e.b #25 Mus ANCESTRAL SPECIES ENSGT01100000263559.A.e.b #25 Mus_A ANCESTRAL SPECIES ENSGT01100000263559.A.e.b #25 Mus_B ANCESTRAL SPECIES ENSGT01100000263559.A.e.b #25 Mus_C ANCESTRAL SPECIES ENSGT01100000263559.A.e.b #25 Steppe mouse MODERN SPECIES 3397 ENSMSIG00000029677 Rrm2b (ENSMSIG00000029663) Ubr5 (ENSMSIG00000029630) Odf1 (ENSMSIG00000029624) Klf10 (ENSMSIG00000029596) Azin1 (ENSMSIG00000029587) ENSMSIG00000029580 Atp6v1c1 (ENSMSIG00000029574) Baalc (ENSMSIG00000029568) ENSMSIG00000029566 Fzd6 (ENSMSIG00000029558) ENSMSIG00000029551 #25 Laurasiatheria ANCESTRAL SPECIES ENSGT01100000263559.A.e.b #25 Laurasiatheria_a ANCESTRAL SPECIES ENSGT01100000263559.A.e.b #25 Laurasiatheria_b ANCESTRAL SPECIES ENSGT01100000263559.A.e.b #25 Carnivora ANCESTRAL SPECIES ENSGT01100000263559.A.e.b #25 Caniformia ANCESTRAL SPECIES ENSGT01100000263559.A.e.b #25 Canidae ANCESTRAL SPECIES ENSGT01100000263559.A.e.b #25 Canis_lupus ANCESTRAL SPECIES ENSGT01100000263559.A.e.b #25 Dingo MODERN SPECIES 223 LIX1L (ENSCAFG00020019943) ANKRD34A (ENSCAFG00020019941) ENSCAFG00020019930 TXNIP (ENSCAFG00020019925) HJV (ENSCAFG00020019923) ENSCAFG00020019918 ENSCAFG00020019917 FCGR1A (ENSCAFG00020019916) H2BC18 (ENSCAFG00020019901) #14 ENSCAFG00020019897 ENSCAFG00020019867 ENSCAFG00020019854 ENSCAFG00020019848 ENSCAFG00020019846 ENSCAFG00020019823 ENSCAFG00020019814 #25 ENSCAFG00020019797 H2AC21 (ENSCAFG00020019793) ENSCAFG00020019789 BOLA1 (ENSCAFG00020019784) SV2A (ENSCAFG00020019781) SF3B4 (ENSCAFG00020019775) MTMR11 (ENSCAFG00020019770) OTUD7B (ENSCAFG00020019694) VPS45 (ENSCAFG00020019689) PLEKHO1 (ENSCAFG00020019684) ENSCAFG00020019677 CA14 (ENSCAFG00020019676) APH1A (ENSCAFG00020019671) C1orf54 (ENSCAFG00020019667) CIART (ENSCAFG00020019665) Sauria ANCESTRAL SPECIES ENSGT01100000263559.A.e.b #25 Archelosauria ANCESTRAL SPECIES ENSGT01100000263559.A.e.b #25 Archosauria ANCESTRAL SPECIES ENSGT01100000263559.A.e.b #25 Aves ANCESTRAL SPECIES ENSGT01100000263559.A.e.b #25 Neognathae ANCESTRAL SPECIES ENSGT01100000263559.A.e.b #25 Neognathae_b ANCESTRAL SPECIES ENSGT01100000263559.A.e.b #25 Passeriformes ANCESTRAL SPECIES ENSGT01100000263559.A.e.b #25 Passeriformes_d ANCESTRAL SPECIES ENSGT01100000263559.A.e.b #25 Passeriformes_g ANCESTRAL SPECIES ENSGT01100000263559.A.e.b #25 Medium ground finch MODERN SPECIES 37 ENSGFOG00000008931 #25 ENSGFOG00000008928 #25 ENSGFOG00000008922 ##36 ENSGFOG00000008918 APOLD1 (ENSGFOG00000008914) DDX47 (ENSGFOG00000008615) ENSGFOG00000008604 ENSGFOG00000008599 FAM234B (ENSGFOG00000008588) GSG1 (ENSGFOG00000008582) EMP1 (ENSGFOG00000008577) GRIN2B (ENSGFOG00000008528) ATF7IP (ENSGFOG00000008511) PLBD1 (ENSGFOG00000008507) GUCY2C (ENSGFOG00000008452) TTC26 (ENSGFOG00000008439) Cryptodira ANCESTRAL SPECIES ENSGT01100000263559.A.e.b #25 Testudinoidea ANCESTRAL SPECIES ENSGT01100000263559.A.e.b #25 Testudinidae ANCESTRAL SPECIES ENSGT01100000263559.A.e.b #25 Abingdon island giant tortoise MODERN SPECIES 1998 DDX47 (ENSCABG00000015120) APOLD1 (ENSCABG00000015123) ENSCABG00000015125 ENSCABG00000015126 ENSCABG00000015127 #37 ENSCABG00000015128 ##36 ENSCABG00000015133 #35 ENSCABG00000015137 ##36 ENSCABG00000015143 ENSCABG00000015148 ##36 ENSCABG00000015152 ENSCABG00000015162 #37 ENSCABG00000015164 ENSCABG00000015176 ##36 H2AC1 (ENSCABG00000015189) ENSCABG00000015207 #25 ENSCABG00000015208 ENSCABG00000015213 ENSCABG00000015217 ENSCABG00000015222 Amniota ANCESTRAL SPECIES 126 ENSGT01060000248528.a.b.a.a.a.b ENSGT00940000164494 ENSGT01100000263569.a.b.b ENSGT01100000263559.B #32 ENSGT00940000156302 ENSGT00940000153092.a.a ENSGT01100000263559.A.f #25 ENSGT00940000153118.db.b Mammalia ANCESTRAL SPECIES 123 ENSGT01100000263559.A.e.a #25 ENSGT01060000248528.b.jh.a.a.b ENSGT01100000263474.a.b.a.d #36 ENSGT01060000248528.b.jh.b ENSGT01100000263514.A.e.a ENSGT01060000248528.b.jh.a.b ENSGT01100000263504.a.b.b.b.b ENSGT00940000153092.a.b ENSGT00940000153125.D ENSGT01100000263506.a.e.a #14 ENSGT01060000248528.b.kh ENSGT01100000263474.a.b.b ##36 ENSGT00940000153092.a.a ENSGT01100000263559.A.f #25 ENSGT00940000153118.db.b Platypus DUPLICATION Platypus MODERN SPECIES 88 ENSOANG00000045700 #35 ENSOANG00000039935 ENSOANG00000000173 ENSOANG00000046785 #32 ENSOANG00000042644 ENSOANG00000040672 ENSOANG00000041683 #32 H1-2 (ENSOANG00000047788) ENSOANG00000042244 #25 H2AC7 (ENSOANG00000049037) ENSOANG00000040002 ENSOANG00000038871 ENSOANG00000049432 ENSOANG00000038547 #32 ENSOANG00000047517 ENSOANG00000048954 #25 ENSOANG00000044997 ENSOANG00000038271 ENSOANG00000049942 ENSOANG00000044699 #32 ENSOANG00000040358 ENSOANG00000040609 H2AC21 (ENSOANG00000047209) ENSOANG00000047921 ENSOANG00000041422 ENSOANG00000036404 ENSOANG00000039121 ENSOANG00000049615 ENSOANG00000036630 ENSOANG00000020663 ENSOANG00000019718 Platypus MODERN SPECIES 88 ENSOANG00000046504 ENSOANG00000043122 ENSOANG00000041825 ##36 ENSOANG00000036615 ENSOANG00000042346 H1-1 (ENSOANG00000050321) ENSOANG00000039485 ENSOANG00000045994 ENSOANG00000040130 ENSOANG00000045306 ENSOANG00000038051 ENSOANG00000038321 ENSOANG00000048075 ENSOANG00000047142 ENSOANG00000037816 ENSOANG00000045607 #25 ENSOANG00000037825 ENSOANG00000051301 ENSOANG00000045094 ENSOANG00000038387 ENSOANG00000045700 #35 ENSOANG00000039935 ENSOANG00000000173 ENSOANG00000046785 #32 ENSOANG00000042644 ENSOANG00000040672 ENSOANG00000041683 #32 H1-2 (ENSOANG00000047788) ENSOANG00000042244 #25 H2AC7 (ENSOANG00000049037) ENSOANG00000040002 Platypus MODERN SPECIES 88 ENSOANG00000047921 H2AC21 (ENSOANG00000047209) ENSOANG00000040609 ENSOANG00000040358 ENSOANG00000044699 #32 ENSOANG00000049942 ENSOANG00000038271 ENSOANG00000044997 ENSOANG00000048954 #25 ENSOANG00000047517 ENSOANG00000038547 #32 ENSOANG00000049432 ENSOANG00000038871 ENSOANG00000040002 H2AC7 (ENSOANG00000049037) ENSOANG00000042244 #25 H1-2 (ENSOANG00000047788) ENSOANG00000041683 #32 ENSOANG00000040672 ENSOANG00000042644 ENSOANG00000046785 #32 ENSOANG00000000173 ENSOANG00000039935 ENSOANG00000045700 #35 ENSOANG00000038387 ENSOANG00000045094 ENSOANG00000051301 ENSOANG00000037825 ENSOANG00000045607 #25 ENSOANG00000037816 ENSOANG00000047142 Theria ANCESTRAL SPECIES 69 ENSGT01100000263559.A.e.a #25 ENSGT01060000248528.b.jh.a.a.b ENSGT01100000263474.a.b.a.d #36 ENSGT01060000248528.b.jh.b ENSGT01100000263514.A.e.a ENSGT01060000248528.b.jh.a.b ENSGT01100000263504.a.b.b.b.b ENSGT00940000160426 ENSGT01100000263575.A ENSGT00940000153125.D ENSGT01100000263506.a.e.a #14 ENSGT01060000248528.b.kh ENSGT01100000263474.a.b.b ##36 ENSGT00940000153092.a.a ENSGT01100000263559.A.f #25 ENSGT01100000263575.B ENSGT00940000156302 ENSGT01100000263559.B #32 ENSGT01100000263569.a.b.b ENSGT00940000164494 ENSGT01060000248528.a.b.a.a.a.b Eutheria ANCESTRAL SPECIES 53 ENSGT01100000263506.a.e.a.a.a.b.a.a.b.a.b.a.b #14 ENSGT00940000153092.a.a.c.a.a ENSGT01100000263559.A.f #25 ENSGT01100000263506.a.e.b #14 ENSGT01050000244808.A.b.b.a ENSGT00950000183190.a.b.a.b Atlantogenata ANCESTRAL SPECIES 205 ENSGT01100000263559.A.f #25 ENSGT01100000263506.a.e.b #14 ENSGT01050000244808.A.b.b.a ENSGT00950000183190.a.b.a.b Afrotheria ANCESTRAL SPECIES 267 ENSGT01100000263559.A.f #25 ENSGT01100000263506.a.e.b #14 ENSGT01050000244808.A.b.b.a ENSGT00950000183190.a.b.a.b Afrotheria_a ANCESTRAL SPECIES 271 ENSGT01100000263559.A.f #25 ENSGT01100000263506.a.e.b #14 ENSGT01050000244808.A.b.b.a ENSGT00950000183190.a.b.a.b Hyrax MODERN SPECIES 9433 ENSPCAG00000018798 ENSPCAG00000018887 #25 H2BC18 (ENSPCAG00000018876) #14 Xenarthra ANCESTRAL SPECIES 1952 ENSGT01100000263559.A.f #25 ENSGT01100000263506.a.e.b #14 Sloth MODERN SPECIES 8910 H3-7 (ENSCHOG00000003977) #25 H2BC18 (ENSCHOG00000003973) #14 Boreoeutheria ANCESTRAL SPECIES ENSGT00390000003103 ENSGT00390000002049.c.a ENSGT00940000156893 ENSGT00950000182907.a.a ENSGT00530000063760.b ENSGT00550000075028 ENSGT00940000159172 ENSGT00940000160276 ENSGT00870000136537 ENSGT00950000182940.b.a.b ENSGT00510000048165 ENSGT00940000153118.db.a.a.b.a.b ENSGT00940000153118.db.a.a.b.a.a ENSGT01100000263575.A ENSGT00940000153092.a.a.c.a.a ENSGT01100000263559.A.f #25 ENSGT01100000263506.a.e.b #14 ENSGT01050000244808.A.b.b.a ENSGT00950000183190.a.b.a.b ENSGT00420000029746.f ENSGT00950000183112.b.b ENSGT00940000158522 ENSGT01060000248645 ENSGT00390000012355.B.b ENSGT00390000005869.a ENSGT00730000111185 ENSGT01050000244841.A.a.b ENSGT00390000014273.b ENSGT00940000158423 ENSGT00530000063074.a ENSGT01030000234539.a.a.b.a.a Euarchontoglires DUPLICATION Euarchontoglires DUPLICATION Euarchontoglires DUPLICATION Euarchontoglires ANCESTRAL SPECIES ENSGT01100000263559.A.f.d.a.a #25 Euarchontoglires_A ANCESTRAL SPECIES ENSGT01100000263559.A.f.d.a.a #25 Glires ANCESTRAL SPECIES ENSGT01100000263559.A.f.d.a.a #25 Rodentia ANCESTRAL SPECIES ENSGT01100000263559.A.f.d.a.a #25 Rodentia_B ANCESTRAL SPECIES ENSGT00530000063074.a ENSGT00940000158423 ENSGT00390000014273.b ENSGT00910000145379.c ENSGT00730000111185 ENSGT00390000005869.a ENSGT00390000012355.B.b ENSGT01060000248645 ENSGT00940000158522 ENSGT00950000183112.b.b ENSGT01050000244808.A.b.b.a ENSGT01100000263506.a.e.b #14 ENSGT01100000263559.A.f.e #25 ENSGT01060000248528.b.kh.yb.a.b ENSGT00940000156302 ENSGT01100000263559.A.f.d.a.a #25 ENSGT01060000248528.b.kh.xb.a.b ENSGT01100000263506.a.e.a.a.a.b.b.b #14 ENSGT01100000263506.a.e.a.a.a.a.a.r.b #14 ENSGT01100000263575.B.u ENSGT00940000153118.db.a.a.b.a.a ENSGT00940000153118.db.a.a.b.a.b ENSGT00510000048165 ENSGT00950000182940.b.a.b ENSGT00870000136537 ENSGT00940000160276 ENSGT00940000159172 ENSGT00550000075028 ENSGT00530000063760.b ENSGT00950000182907.a.a ENSGT00940000156893 Myomorpha ANCESTRAL SPECIES 12 ENSGT01030000234539.a.a.b.a.a ENSGT00530000063074.a ENSGT00940000158423 ENSGT00390000014273.b ENSGT00730000111185 ENSGT00390000005869.a ENSGT00390000012355.B.b ENSGT01060000248645 ENSGT00940000158522 ENSGT00950000183112.b.b ENSGT01050000244808.A.b.b.a ENSGT01100000263506.a.e.b #14 ENSGT01100000263559.A.f.e #25 ENSGT01060000248528.b.kh.yb.a.b ENSGT00940000156302 ENSGT01100000263559.A.f.d.a.a #25 ENSGT01060000248528.b.kh.xb.a.b ENSGT01100000263506.a.e.a.a.a.b.b.b #14 ENSGT01100000263506.a.e.a.a.a.a.a.r.b #14 ENSGT01100000263575.B.u ENSGT00940000153118.db.a.a.b.a.a ENSGT00940000153118.db.a.a.b.a.b ENSGT00510000048165 ENSGT00950000182940.b.a.b ENSGT00870000136537 ENSGT00940000160276 ENSGT00940000159172 ENSGT00550000075028 ENSGT00530000063760.b ENSGT00950000182907.a.a ENSGT00940000156893 Muroidea ANCESTRAL SPECIES 118 ENSGT01060000248528.b.kh.yb.a.b ENSGT00940000156302 ENSGT01100000263559.A.f.d.a.a #25 Muroidea_A ANCESTRAL SPECIES 64 ENSGT01060000248528.b.kh.yb.a.b ENSGT00940000156302 ENSGT01100000263559.A.f.d.a.a #25 Murinae ANCESTRAL SPECIES 5 ENSGT00530000063074.a ENSGT00940000158423 ENSGT00390000014273.b ENSGT00730000111185 ENSGT00390000005869.a ENSGT00390000012355.B.b ENSGT00940000165934 ENSGT00940000158522 ENSGT00950000183112.b.b ENSGT01050000244808.A.b.b.a ENSGT01100000263506.a.e.b #14 ENSGT01100000263559.B #32 ENSGT01100000263559.A.f.e #25 ENSGT01060000248528.b.kh.yb.a.b ENSGT00940000156302 ENSGT01100000263559.A.f.d.a.a #25 ENSGT01060000248528.b.kh.xb.a.b ENSGT01100000263506.a.e.a.a.a.b.b.b #14 ENSGT00940000153118.db.a.a.b.a.a ENSGT00940000153118.db.a.a.b.a.b ENSGT00510000048165 ENSGT00950000182940.b.a.b ENSGT00870000136537 ENSGT00940000160276 ENSGT00940000159172 ENSGT00550000075028 ENSGT00530000063760.b ENSGT00950000182907.a.a.u ENSGT00940000156893 ENSGT00390000002049.c.a ENSGT00390000003103 Mus ANCESTRAL SPECIES 7 ENSGT00940000158423.c ENSGT00390000014273.b ENSGT00730000111185 ENSGT00390000005869.a ENSGT00390000012355.B.b ENSGT00940000165934 ENSGT00860000135842 ENSGT00940000158522 ENSGT00950000183112.b.b ENSGT01050000244808.A.b.b.a ENSGT01100000263506.a.e.b #14 ENSGT01100000263559.B #32 ENSGT01100000263559.A.f.e #25 ENSGT01060000248528.b.kh.yb.a.b ENSGT00940000156302 ENSGT01100000263559.A.f.d.a.a #25 ENSGT01060000248528.b.kh.xb.a.b ENSGT01100000263506.a.e.a.a.a.b.b.b #14 ENSGT00940000153118.db.a.a.b.a.a ENSGT00940000153118.db.a.a.b.a.b ENSGT00510000048165 ENSGT00950000182940.b.a.b ENSGT00870000136537 ENSGT00940000160276 ENSGT00940000159172 ENSGT00550000075028 ENSGT00530000063760.b ENSGT00950000182907.a.a.u ENSGT00940000156893 ENSGT00390000002049.c.a ENSGT00390000003103 Mus_A ANCESTRAL SPECIES 9 ENSGT00530000063074.a ENSGT00940000158423.c ENSGT00390000014273.b ENSGT00730000111185.n.a ENSGT00390000005869.a ENSGT00390000012355.B.b ENSGT00940000165934 ENSGT00860000135842 ENSGT00940000158522 ENSGT00950000183112.b.b ENSGT01050000244808.A.b.b.a ENSGT01100000263506.a.e.b #14 ENSGT01100000263559.A.f.e #25 ENSGT01060000248528.b.kh.yb.a.b ENSGT00940000156302 ENSGT01100000263559.A.f.d.a.a #25 ENSGT01100000263506.a.e.a.a.a.b.b.b #14 ENSGT00940000153092.a.a.d.f.a ENSGT00940000153118.db.a.a.b.a.a ENSGT00940000153118.db.a.a.b.a.b ENSGT00510000048165 ENSGT00950000182940.b.a.b ENSGT00870000136537 ENSGT00940000160276 ENSGT00940000159172 ENSGT00550000075028 ENSGT00530000063760.b ENSGT00950000182907.a.a.u ENSGT00940000156893 ENSGT00390000002049.c.a ENSGT00390000003103 Mus_B ANCESTRAL SPECIES ENSGT01100000263559.A.f.d.a.a #25 Mouse MODERN SPECIES 12 Car14 (ENSMUSG00000038526) Anp32e (ENSMUSG00000015749) Plekho1 (ENSMUSG00000015745) Vps45 (ENSMUSG00000015747) Otud7b (ENSMUSG00000038495) Mtmr11 (ENSMUSG00000045934) Sf3b4 (ENSMUSG00000068856) Sv2a (ENSMUSG00000038486) Bola1 (ENSMUSG00000015943) H2ac21 (ENSMUSG00000063689) H2ac20 (ENSMUSG00000068855) H2bc21 (ENSMUSG00000068854) #14 H3c15 (ENSMUSG00000081058) #25 H2ac19 (ENSMUSG00000063954) H2ac18 (ENSMUSG00000064220) H3c14 (ENSMUSG00000093769) #25 H4c14 (ENSMUSG00000091405) H3c13 (ENSMUSG00000074403) #25 H2bc18 (ENSMUSG00000105827) #14 Fcgr1 (ENSMUSG00000015947) Hjv (ENSMUSG00000038403) Txnip (ENSMUSG00000038393) Gm16253 (ENSMUSG00000087610) Polr3gl (ENSMUSG00000028104) Ankrd34a (ENSMUSG00000049097) Lix1l (ENSMUSG00000049288) Rbm8a (ENSMUSG00000038374) Pex11b (ENSMUSG00000028102) Itga10 (ENSMUSG00000090210) Ankrd35 (ENSMUSG00000038354) Pias3 (ENSMUSG00000028101) Euarchontoglires ANCESTRAL SPECIES 7 ENSGT00940000163269 ENSGT01100000263514.A.e.a.b.a.b.a.b ENSGT00940000163082 ENSGT01100000263517.b.d.m.a.a.b ENSGT01060000248528.b.kh.xb.b.b ENSGT00940000163525 ENSGT01100000263506.a.e.a.a.a.b.a.a.b.a.b.b #14 ENSGT00940000153092.a.a.c.a.b ENSGT01100000263514.A.e.a.b.a.a.c.b ENSGT01100000263506.a.e.a.a.a.b.a.a.a #14 ENSGT00940000153125.E.c.b ENSGT01100000263514.A.e.a.b.a.b.a.a.a.b.a.a.a.a ENSGT00940000153125.A ENSGT01100000263506.a.e.a.a.a.a.b.a #14 ENSGT01060000248528.b.jh.a.b ENSGT01100000263559.A.f.d.a.b #25 ENSGT00940000162723 ENSGT00940000158017 ENSGT00940000161530 ENSGT00950000182802.B.a.a.b ENSGT00390000002062 ENSGT00940000162956 ENSGT01100000263506.a.e.a.a.a.b.b.b #14 ENSGT00940000153125.D.a.b ENSGT01100000263506.a.e.a.a.a.a.b.b #14 ENSGT00940000153125.C ENSGT00940000160281 ENSGT00940000153104.e.b.a.b ENSGT00940000162941 ENSGT01100000263506.a.e.a.a.a.b.a.a.b.a.b.a.a.a #14 ENSGT00940000153092.a.b.f Primates ANCESTRAL SPECIES ENSGT01100000263559.A.f.d.a.b #25 Haplorrhini ANCESTRAL SPECIES ENSGT01100000263559.A.f.d.a.b #25 Simiiformes ANCESTRAL SPECIES ENSGT01100000263559.A.f.d.a.b #25 Platyrrhini ANCESTRAL SPECIES ENSGT01100000263559.A.f.d.a.b #25 Cebidae ANCESTRAL SPECIES ENSGT01100000263559.A.f.d.a.b #25 Cebidae_a ANCESTRAL SPECIES ENSGT01100000263559.A.f.d.a.b #25 Capuchin MODERN SPECIES 188 CA14 (ENSCCAG00000023681) ENSCCAG00000020910 PLEKHO1 (ENSCCAG00000033185) VPS45 (ENSCCAG00000037065) OTUD7B (ENSCCAG00000036948) MTMR11 (ENSCCAG00000035057) ENSCCAG00000021751 SV2A (ENSCCAG00000035849) H2AC21 (ENSCCAG00000020094) H2AC20 (ENSCCAG00000005773) H2BC21 (ENSCCAG00000020545) ENSCCAG00000034681 ##28 ENSCCAG00000000823 #25 ENSCCAG00000026615 H2AC18 (ENSCCAG00000020282) ENSCCAG00000013177 #25 ENSCCAG00000029951 ##28 H2BC18 (ENSCCAG00000036311) #14 ENSCCAG00000036223 Euarchontoglires_A ANCESTRAL SPECIES ENSGT01100000263559.A.f.d.a.b #25 Glires ANCESTRAL SPECIES ENSGT01100000263559.A.f.d.a.b #25 Rodentia ANCESTRAL SPECIES ENSGT00950000182940.b.a.b ENSGT00510000048165 ENSGT00940000153118.db.a.a.b.a.b ENSGT00940000153118.db.a.a.b.a.a ENSGT01100000263575.B.u ENSGT01100000263506.a.e.a.a.a.a.a.r.b #14 ENSGT01100000263506.a.e.a.a.a.b.a.a.a.s #14 ENSGT00940000153125.E.c.b ENSGT01100000263514.A.e.a.b.a.b.a.b ENSGT01100000263514.A.e.a.b.a.b.a.a.b ENSGT00940000162950 ENSGT01020000230360.c.b.a.b.b.d ##31 ENSGT01100000263506.a.e.a.a.a.b.a.a.b.a.a #14 ENSGT00940000163525 ENSGT01060000248528.b.jh.a.b ENSGT01100000263559.A.f.d.a.b #25 ENSGT01100000263506.a.e.b #14 ENSGT01050000244808.A.b.b.a ENSGT00950000183112.b.b ENSGT00940000158522 ENSGT01060000248645 ENSGT00390000012355.B.b ENSGT00390000005869.a ENSGT00730000111185 ENSGT01050000244841.A.a.b ENSGT00390000014273.b ENSGT00940000158423 ENSGT00530000063074.a ENSGT01030000234539.a.a.b.a.a ENSGT00390000013847 ENSGT00390000002799 Rodentia_B ANCESTRAL SPECIES ENSGT01100000263559.A.f.d.a.b #25 Myomorpha ANCESTRAL SPECIES ENSGT01100000263559.A.f.d.a.b #25 Muroidea ANCESTRAL SPECIES 6 ENSGT00950000182940.b.a.b ENSGT00510000048165 ENSGT00940000153118.db.a.a.b.a.b ENSGT00940000153118.db.a.a.b.a.a ENSGT01100000263575.B.u ENSGT01100000263506.a.e.a.a.a.a.a.r.b #14 ENSGT01100000263506.a.e.a.a.a.b.b.b #14 ENSGT01060000248528.b.kh.xb.a.b ENSGT01100000263514.A.e.a.b.a.b.a.b ENSGT00940000153092.a.a.c.a.a.g ENSGT01100000263506.a.e.a.a.a.b.a.a.b.a.b.b #14 ENSGT01100000263506.a.e.a.a.a.b.a.a.b.a.a #14 ENSGT00940000163525 ENSGT01060000248528.b.kh.xb.b.b ENSGT01060000248528.b.jh.a.b ENSGT01100000263559.A.f.d.a.b #25 ENSGT01100000263506.a.e.b #14 ENSGT01050000244808.A.b.b.a ENSGT00950000183112.b.b ENSGT00940000158522 ENSGT01060000248645 ENSGT00390000012355.B.b ENSGT00390000005869.a ENSGT00730000111185 ENSGT00390000014273.b ENSGT00940000158423 ENSGT00530000063074.a ENSGT01030000234539.a.a.b.a.a ENSGT00390000013847 ENSGT00390000002799 ENSGT00940000157203 Muroidea_A ANCESTRAL SPECIES 90 ENSGT01060000248528.b.jh.a.b ENSGT01100000263559.A.f.d.a.b #25 Murinae ANCESTRAL SPECIES 21 ENSGT00940000155501.a.b ENSGT01100000263514.A.f ENSGT00940000155501.a.a ENSGT00940000162950.d ENSGT01100000263514.A.e.a.b.a.b.a.a.a.a ENSGT00940000153092.a.a.c.a.a.g ENSGT01100000263506.a.e.a.a.a.b.a.a.b.a.b.a.a.a.p #14 ENSGT01100000263506.a.e.a.a.a.b.a.a.b.a.a #14 ENSGT00940000163525 ENSGT01060000248528.b.kh.yb.b ENSGT01100000263517.b.d.m.a.a.b ENSGT00940000163082 ENSGT01100000263559.A.f.d.b #25 ENSGT00940000153092.a.a.d.e.b ENSGT01100000263506.a.f.b.p.a #14 ENSGT01100000263559.A.f.d.a.b #25 ENSGT01100000263514.A.e.a.b.a.a.c.b ENSGT00940000163269 ENSGT00940000160468 ENSGT00940000161926 ENSGT00940000162523 ENSGT00940000162346 ENSGT00940000160894 ENSGT01100000263474.a.a.c.b ##36 ENSGT00940000161385 ENSGT00950000183108.a ENSGT00940000155112.B ENSGT00390000010830 ENSGT00940000153717.a.a ENSGT00530000068834 ENSGT00940000153270.a Mus ANCESTRAL SPECIES 18 ENSGT00390000010830 ENSGT00940000155112.B ENSGT00950000183108.a ENSGT00940000161385 ENSGT01100000263474.a.a.c.b ##36 ENSGT00940000160894 ENSGT00940000162346 ENSGT00940000162523 ENSGT00940000161926 ENSGT00940000160468 ENSGT00940000163269 ENSGT01100000263514.A.e.a.b.a.a.c.b ENSGT01100000263559.A.f.d.b #25 ENSGT00940000153092.a.a.d.e.b ENSGT01100000263506.a.f.b.p.a #14 ENSGT01100000263559.A.f.d.a.b #25 ENSGT00940000163082 ENSGT01100000263517.b.d.m.a.a.b ENSGT01060000248528.b.kh.yb.b ENSGT00940000163525 ENSGT01100000263506.a.e.a.a.a.b.a.a.b.a.b.a.a.a.p #14 ENSGT00940000153092.a.a.c.a.a.g ENSGT00940000155501.a.a ENSGT01100000263514.A.f ENSGT00940000155501.a.b ENSGT01060000248528.b.jh.b ENSGT01100000263506.a.f.b.p.b #14 ENSGT01060000248528.b.kh.yb.a.a ENSGT00940000162950.d ENSGT01100000263514.A.e.a.b.a.b.a.a.a.a ENSGT01060000248528.b.jh.a.a.b Mus_A ANCESTRAL SPECIES 7 ENSGT01030000234599.a.b ENSGT00940000155774.b ENSGT00950000182961.a.b.a.b ENSGT00950000182961.a.b.a.a ENSGT00940000160320 ENSGT00530000063694.b ENSGT01050000244814.a.a.a.b ENSGT00940000163122 ENSGT00950000182696.A.a ENSGT00940000155964 ENSGT00940000155357.q.a ENSGT00530000063707.a ENSGT00530000063509.A ENSGT00940000155955.C ENSGT01060000248528.b.jh.a.b ENSGT01100000263559.A.f.d.a.b #25 ENSGT00940000153118.db.a.a.a ENSGT01100000263795 ENSGT00390000013440 ENSGT00390000003800 ENSGT01030000234601.c.a.b ENSGT00390000003753.b ENSGT00930000151058 ENSGT00390000006233.c.a.b ENSGT00390000013260.C ENSGT00940000159750 ENSGT00940000154814.b ENSGT00940000156403.b ENSGT00940000155197 ENSGT00390000007878 ENSGT00940000158916 Mus_B ANCESTRAL SPECIES 13 ENSGT01030000234553.b.b.c.b.a.a.b.a.a.a.a.a.b.b.a ENSGT01030000234553.b.b.c.b.a.a.b.a.a.a.a.b.a.a.b.b ENSGT01030000234553.b.b.c.b.b.c.b.a.a ENSGT00940000162956 ENSGT00390000002062 ENSGT00940000161530 ENSGT00940000158017 ENSGT00940000155501.a.b ENSGT01100000263559.A.f.e #25 ENSGT00940000156302 ENSGT01100000263506.a.e.a.a.a.b.a.a.b.a.b.a.a.a.p #14 ENSGT00940000155501.a.a ENSGT01100000263506.a.e.a.a.a.b.a.a.b.a.b.a.a.b #14 ENSGT00940000163525 ENSGT01060000248528.b.jh.a.b ENSGT01100000263559.A.f.d.a.b #25 ENSGT01100000263517.b.d.m.a.a.b ENSGT00940000163082 ENSGT01100000263559.A.f.d.b #25 ENSGT01100000263506.a.f.b.p.a #14 ENSGT01100000263514.A.e.a.b.a.a.c.b ENSGT00940000163269 ENSGT00940000160468 ENSGT00940000161926 ENSGT00940000162523 ENSGT00940000162346 ENSGT00940000160894 ENSGT01100000263474.a.a.c.b ##36 ENSGT00940000161385 ENSGT00950000183108.a ENSGT00940000155112.B Mouse MODERN SPECIES 12 Plekho1 (ENSMUSG00000015745) Vps45 (ENSMUSG00000015747) Otud7b (ENSMUSG00000038495) Mtmr11 (ENSMUSG00000045934) Sf3b4 (ENSMUSG00000068856) Sv2a (ENSMUSG00000038486) Bola1 (ENSMUSG00000015943) H2ac21 (ENSMUSG00000063689) H2ac20 (ENSMUSG00000068855) H2bc21 (ENSMUSG00000068854) #14 H3c15 (ENSMUSG00000081058) #25 H2ac19 (ENSMUSG00000063954) H2ac18 (ENSMUSG00000064220) H3c14 (ENSMUSG00000093769) #25 H4c14 (ENSMUSG00000091405) H3c13 (ENSMUSG00000074403) #25 H2bc18 (ENSMUSG00000105827) #14 Fcgr1 (ENSMUSG00000015947) Hjv (ENSMUSG00000038403) Txnip (ENSMUSG00000038393) Gm16253 (ENSMUSG00000087610) Polr3gl (ENSMUSG00000028104) Ankrd34a (ENSMUSG00000049097) Lix1l (ENSMUSG00000049288) Rbm8a (ENSMUSG00000038374) Pex11b (ENSMUSG00000028102) Itga10 (ENSMUSG00000090210) Ankrd35 (ENSMUSG00000038354) Pias3 (ENSMUSG00000028101) Nudt17 (ENSMUSG00000028100) Polr3c (ENSMUSG00000028099) Shrew mouse MODERN SPECIES 7 Scgn (MGP_PahariEiJ_G0019410) H2ac1 (MGP_PahariEiJ_G0019409) H2bc1 (MGP_PahariEiJ_G0019408) ##36 Slc17a4 (MGP_PahariEiJ_G0019407) Slc17a1 (MGP_PahariEiJ_G0019406) Slc17a3 (MGP_PahariEiJ_G0019405) Slc17a2 (MGP_PahariEiJ_G0019404) Trim38 (MGP_PahariEiJ_G0019403) H1f1 (MGP_PahariEiJ_G0019402) MGP_PahariEiJ_G0019401 MGP_PahariEiJ_G0019400 MGP_PahariEiJ_G0019399 MGP_PahariEiJ_G0019398 #32 MGP_PahariEiJ_G0019397 H2bc3 (MGP_PahariEiJ_G0019396) #14 MGP_PahariEiJ_G0019395 #25 H1f2 (MGP_PahariEiJ_G0019394) Hfe (MGP_PahariEiJ_G0019393) MGP_PahariEiJ_G0019392 H1f6 (MGP_PahariEiJ_G0019391) MGP_PahariEiJ_G0019390 #14 H1f4 (MGP_PahariEiJ_G0019389) MGP_PahariEiJ_G0019388 #14 MGP_PahariEiJ_G0019387 MGP_PahariEiJ_G0019386 MGP_PahariEiJ_G0019385 MGP_PahariEiJ_G0019384 #25 MGP_PahariEiJ_G0019383 #32 H1f3 (MGP_PahariEiJ_G0019382) MGP_PahariEiJ_G0019381 MGP_PahariEiJ_G0019380 Euarchontoglires ANCESTRAL SPECIES 72 ENSGT00940000153092.a.a.d ENSGT01100000263559.A.f.d.b #25 Euarchontoglires_A ANCESTRAL SPECIES 6 ENSGT00940000155112.B ENSGT00950000183108.a ENSGT00940000161385 ENSGT01100000263474.a.a.c.b ##36 ENSGT00940000160894 ENSGT00940000162346 ENSGT00940000162523 ENSGT00940000161926 ENSGT00940000160468 ENSGT00940000163269 ENSGT01100000263514.A.e.a.b.a.b.a.a.a.b.a.b ENSGT00940000153125.C ENSGT01100000263506.a.e.a.a.a.a.b.b #14 ENSGT01060000248528.b.jh.a.a.b ENSGT00940000153092.a.a.d ENSGT01100000263559.A.f.d.b #25 ENSGT00940000163082 ENSGT01100000263517.b.d.m.a.a.b ENSGT00940000163525 ENSGT01100000263506.a.e.a.a.a.b.a.a.b.a.a #14 ENSGT00940000153092.a.b.f ENSGT00940000155501.a.a ENSGT01100000263474.a.b.b.e.a.a.a.a ##36 ENSGT01060000248528.b.kh.xb.b.a ENSGT00940000162723 ENSGT00940000158017 ENSGT00940000161530 ENSGT00950000182802.B.a.a.b ENSGT00390000002062 ENSGT00940000162956 ENSGT01030000234553.b.b.c.b.a Glires ANCESTRAL SPECIES 75 ENSGT00940000153092.a.a.d ENSGT01100000263559.A.f.d.b #25 Rodentia ANCESTRAL SPECIES 75 ENSGT00940000153092.a.a.d ENSGT01100000263559.A.f.d.b #25 Rodentia_B ANCESTRAL SPECIES 113 ENSGT00940000153092.a.a.d ENSGT01100000263559.A.f.d.b #25 Myomorpha ANCESTRAL SPECIES 127 ENSGT00940000153092.a.a.d ENSGT01100000263559.A.f.d.b #25 Muroidea ANCESTRAL SPECIES 149 ENSGT00940000153092.a.a.d ENSGT01100000263559.A.f.d.b #25 Muroidea_A ANCESTRAL SPECIES 14 ENSGT00940000159644.t ENSGT00940000163016 ENSGT00940000162298 ENSGT00940000163102 ENSGT00940000159644.s ENSGT00860000135624 ENSGT00940000161576 ENSGT00940000163486 ENSGT01100000263486.a.b.a.a.a.a.a.b.a.b.b.a ENSGT01100000263486.a.b.a.b.a ENSGT01100000263486.a.b.b ENSGT01100000263548.a.b.b.ob ENSGT01100000263486.a.a ENSGT01100000263548.a.b.b.nb.a ENSGT00940000153092.a.a.d ENSGT01100000263559.A.f.d.b #25 ENSGT00940000164849 ENSGT00940000153253.b.a.h ENSGT00940000160281 ENSGT00390000002062 ENSGT00940000161530 ENSGT00940000158017 ENSGT01060000248528.b.jh.a.a.b ENSGT01100000263506.a.e.a.a.a.a.b.b #14 ENSGT01100000263514.A.e.a.b.a.b.a.a.a.a ENSGT01060000248528.b.jh.b ENSGT01100000263506.a.e.a.a.a.b.a.a.b.a.b.b #14 ENSGT01100000263506.a.e.a.a.a.b.a.a.b.a.b.a.a.a.o.b #14 ENSGT01060000248528.b.kh.yb.a.a ENSGT01100000263506.a.f.b.p.b #14 ENSGT00940000155501.a.a Murinae ANCESTRAL SPECIES 21 ENSGT00390000010830 ENSGT00940000155112.B ENSGT00950000183108.a ENSGT00940000161385 ENSGT01100000263474.a.a.c.b ##36 ENSGT00940000160894 ENSGT00940000162346 ENSGT00940000162523 ENSGT00940000161926 ENSGT00940000160468 ENSGT00940000163269 ENSGT01100000263514.A.e.a.b.a.a.c.b ENSGT01100000263559.A.f.d.a.b #25 ENSGT01100000263506.a.f.b.p.a #14 ENSGT00940000153092.a.a.d.e.b ENSGT01100000263559.A.f.d.b #25 ENSGT00940000163082 ENSGT01100000263517.b.d.m.a.a.b ENSGT01060000248528.b.kh.yb.b ENSGT00940000163525 ENSGT01100000263506.a.e.a.a.a.b.a.a.b.a.a #14 ENSGT01100000263506.a.e.a.a.a.b.a.a.b.a.b.a.a.a.p #14 ENSGT00940000153092.a.a.c.a.a.g ENSGT01100000263514.A.e.a.b.a.b.a.a.a.a ENSGT00940000162950.d ENSGT00940000155501.a.a ENSGT01100000263514.A.f ENSGT00940000155501.a.b ENSGT01060000248528.b.jh.a.a.a ENSGT01100000263506.a.f.b.o #14 ENSGT01060000248528.b.jh.a.a.b Mus ANCESTRAL SPECIES 18 ENSGT01060000248528.b.kh.yb.a.a ENSGT01100000263506.a.f.b.p.b #14 ENSGT01060000248528.b.jh.b ENSGT00940000155501.a.b ENSGT01100000263514.A.f ENSGT00940000155501.a.a ENSGT00940000153092.a.a.c.a.a.g ENSGT01100000263506.a.e.a.a.a.b.a.a.b.a.b.a.a.a.p #14 ENSGT00940000163525 ENSGT01060000248528.b.kh.yb.b ENSGT01100000263517.b.d.m.a.a.b ENSGT00940000163082 ENSGT01100000263559.A.f.d.a.b #25 ENSGT01100000263506.a.f.b.p.a #14 ENSGT00940000153092.a.a.d.e.b ENSGT01100000263559.A.f.d.b #25 ENSGT01100000263514.A.e.a.b.a.a.c.b ENSGT00940000163269 ENSGT00940000160468 ENSGT00940000161926 ENSGT00940000162523 ENSGT00940000162346 ENSGT00940000160894 ENSGT01100000263474.a.a.c.b ##36 ENSGT00940000161385 ENSGT00950000183108.a ENSGT00940000155112.B ENSGT00390000010830 ENSGT00940000153717.a.a ENSGT00530000068834 ENSGT00940000153270.a Mus_A ANCESTRAL SPECIES 14 ENSGT00940000153717.a.a ENSGT00390000010830 ENSGT00940000155112.B ENSGT00950000183108.a ENSGT00940000161385 ENSGT01100000263474.a.a.c.b ##36 ENSGT00940000160894 ENSGT00940000162346 ENSGT00940000162523 ENSGT00940000161926 ENSGT00940000160468 ENSGT00940000163269 ENSGT01100000263514.A.e.a.b.a.a.c.b ENSGT01100000263506.a.f.b.p.a #14 ENSGT00940000153092.a.a.d.e.b ENSGT01100000263559.A.f.d.b #25 ENSGT00940000163082 ENSGT01100000263517.b.d.m.a.a.b ENSGT01060000248528.b.jh.a.a.a ENSGT00940000163525 ENSGT01100000263506.a.e.a.a.a.b.a.a.b.a.b.a.a.b #14 ENSGT00940000155501.a.a ENSGT01100000263514.A.f ENSGT00940000155501.a.b ENSGT01060000248528.b.jh.b ENSGT01100000263506.a.f.b.p.b #14 ENSGT01060000248528.b.kh.yb.a.a ENSGT01100000263506.a.e.a.a.a.b.a.a.b.a.b.a.a.a.p #14 ENSGT00940000153092.a.a.c.a.a.g ENSGT01100000263559.B #32 ENSGT01060000248528.b.jh.a.a.b Ryukyu mouse MODERN SPECIES 4 Zscan26 (MGP_CAROLIEiJ_G0018271) Nkapl (MGP_CAROLIEiJ_G0018272) MGP_CAROLIEiJ_G0018273 Zkscan4 (MGP_CAROLIEiJ_G0018274) Zkscan8 (MGP_CAROLIEiJ_G0018275) MGP_CAROLIEiJ_G0018276 MGP_CAROLIEiJ_G0018277 Or2w2 (MGP_CAROLIEiJ_G0018278) Or2w4 (MGP_CAROLIEiJ_G0018279) Or2b6 (MGP_CAROLIEiJ_G0018280) Or2w6 (MGP_CAROLIEiJ_G0018281) MGP_CAROLIEiJ_G0018282 MGP_CAROLIEiJ_G0018283 MGP_CAROLIEiJ_G0018284 #14 MGP_CAROLIEiJ_G0018285 MGP_CAROLIEiJ_G0018286 #25 MGP_CAROLIEiJ_G0018287 #14 MGP_CAROLIEiJ_G0018288 #14 MGP_CAROLIEiJ_G0018289 #14 MGP_CAROLIEiJ_G0018290 MGP_CAROLIEiJ_G0018291 H1f5 (MGP_CAROLIEiJ_G0018292) MGP_CAROLIEiJ_G0018293 Zfp184 (MGP_CAROLIEiJ_G0018294) Pom121l2 (MGP_CAROLIEiJ_G0018295) Prss16 (MGP_CAROLIEiJ_G0018296) MGP_CAROLIEiJ_G0018297 MGP_CAROLIEiJ_G0018298 MGP_CAROLIEiJ_G0018299 MGP_CAROLIEiJ_G0018300 Vmn1r191 (MGP_CAROLIEiJ_G0018301) Mus_B ANCESTRAL SPECIES 13 ENSGT00530000068834 ENSGT00940000153717.a.a ENSGT00390000010830 ENSGT00940000155112.B ENSGT00950000183108.a ENSGT00940000161385 ENSGT01100000263474.a.a.c.b ##36 ENSGT00940000160894 ENSGT00940000162346 ENSGT00940000162523 ENSGT00940000161926 ENSGT00940000160468 ENSGT00940000163269 ENSGT01100000263514.A.e.a.b.a.a.c.b ENSGT01100000263506.a.f.b.p.a #14 ENSGT01100000263559.A.f.d.b #25 ENSGT00940000163082 ENSGT01100000263517.b.d.m.a.a.b ENSGT01100000263559.A.f.d.a.b #25 ENSGT01060000248528.b.jh.a.b ENSGT00940000163525 ENSGT01100000263506.a.e.a.a.a.b.a.a.b.a.b.a.a.b #14 ENSGT00940000155501.a.a ENSGT01100000263506.a.e.a.a.a.b.a.a.b.a.b.a.a.a.p #14 ENSGT00940000156302 ENSGT01100000263559.A.f.e #25 ENSGT00940000155501.a.b ENSGT00940000158017 ENSGT00940000161530 ENSGT00390000002062 ENSGT00940000162956 Mouse MODERN SPECIES 4 Scgn (ENSMUSG00000021337) H2ac1 (ENSMUSG00000060081) H2bc1 (ENSMUSG00000050799) ##36 Slc17a4 (ENSMUSG00000021336) Slc17a1 (ENSMUSG00000021335) Slc17a3 (ENSMUSG00000036083) Slc17a2 (ENSMUSG00000036110) Trim38 (ENSMUSG00000064140) H1f1 (ENSMUSG00000049539) H3c1 (ENSMUSG00000069265) H4c1 (ENSMUSG00000060093) H4c2 (ENSMUSG00000069266) H3c2 (ENSMUSG00000069267) #32 H2ac4 (ENSMUSG00000061615) H2bc3 (ENSMUSG00000075031) #14 H3c3 (ENSMUSG00000069310) #25 H1f2 (ENSMUSG00000036181) Hfe (ENSMUSG00000006611) H4c3 (ENSMUSG00000060678) H1f6 (ENSMUSG00000036211) H2bc4 (ENSMUSG00000018102) #14 H2ac6 (ENSMUSG00000069270) H1f4 (ENSMUSG00000051627) H2bc6 (ENSMUSG00000047246) #14 H4c4 (ENSMUSG00000061482) H3c4 (ENSMUSG00000099583) #32 H2ac7 (ENSMUSG00000071478) H2bc7 (ENSMUSG00000069268) #14 H2bc8 (ENSMUSG00000058385) #14 H2ac8 (ENSMUSG00000069272) H3c6 (ENSMUSG00000069273) #32 Shrew mouse MODERN SPECIES 7 MGP_PahariEiJ_G0019399 MGP_PahariEiJ_G0019398 #32 MGP_PahariEiJ_G0019397 H2bc3 (MGP_PahariEiJ_G0019396) #14 MGP_PahariEiJ_G0019395 #25 H1f2 (MGP_PahariEiJ_G0019394) Hfe (MGP_PahariEiJ_G0019393) MGP_PahariEiJ_G0019392 H1f6 (MGP_PahariEiJ_G0019391) MGP_PahariEiJ_G0019390 #14 H1f4 (MGP_PahariEiJ_G0019389) MGP_PahariEiJ_G0019388 #14 MGP_PahariEiJ_G0019387 MGP_PahariEiJ_G0019386 MGP_PahariEiJ_G0019385 MGP_PahariEiJ_G0019384 #25 MGP_PahariEiJ_G0019383 #32 H1f3 (MGP_PahariEiJ_G0019382) MGP_PahariEiJ_G0019381 MGP_PahariEiJ_G0019380 MGP_PahariEiJ_G0019379 Btn2a2 (MGP_PahariEiJ_G0019378) Btn1a1 (MGP_PahariEiJ_G0019377) Abt1 (MGP_PahariEiJ_G0019376) Zfp322a (MGP_PahariEiJ_G0019375) Vmn1r223 (MGP_PahariEiJ_G0019374) MGP_PahariEiJ_G0019373 MGP_PahariEiJ_G0019372 MGP_PahariEiJ_G0019371 MGP_PahariEiJ_G0019370 MGP_PahariEiJ_G0019369 Rat MODERN SPECIES 8 LOC120097726 (ENSRNOG00000069245) Hist1h3b (ENSRNOG00000068516) LOC100910200 (ENSRNOG00000064011) #14 LOC102548682 (ENSRNOG00000064521) #32 hist1h2ail2 (ENSRNOG00000067434) H4f3 (ENSRNOG00000048264) Hist1h4m (ENSRNOG00000070513) H1f4 (ENSRNOG00000047459) AC130391.3 (ENSRNOG00000053025) Hist1h2bq (ENSRNOG00000069578) #14 H1f6 (ENSRNOG00000061863) Hist1h4m (ENSRNOG00000070706) Hfe (ENSRNOG00000016967) H1f2 (ENSRNOG00000067441) Hist1h2af (ENSRNOG00000022146) H3c13 (ENSRNOG00000065054) #25 LOC102549173 (ENSRNOG00000066835) #25 Hist1h4m (ENSRNOG00000065263) Hist1h3b (ENSRNOG00000068614) H1f1 (ENSRNOG00000017175) Slc17a2 (ENSRNOG00000017180) Slc17a3 (ENSRNOG00000032745) AABR07027750.1 (ENSRNOG00000042692) Slc17a4 (ENSRNOG00000022505) H2bc1 (ENSRNOG00000069905) ##36 H2ac1 (ENSRNOG00000065352) Scgn (ENSRNOG00000016628) Carmil1 (ENSRNOG00000016576) ENSRNOG00000064118 ENSRNOG00000067245 Cmahp (ENSRNOG00000003094) Rodentia_A ANCESTRAL SPECIES ENSGT01100000263559.A.f.d.b #25 Hystricomorpha ANCESTRAL SPECIES 42 ENSGT01050000244828.c.b.b.a.a.b ENSGT01090000260018.D.d.b ENSGT00940000162956 ENSGT00390000002062 ENSGT00950000182802.B.a.a.b ENSGT00940000161530 ENSGT00940000158017 ENSGT00940000155501.a.a ENSGT00940000153125.F.g ENSGT01100000263506.a.e.a.a.a.b.a.a.b.a.b.b #14 ENSGT01100000263517.b.d.m.a.a.b ENSGT00940000163082 ENSGT01100000263559.B #32 ENSGT01100000263559.A.f.d.b #25 ENSGT01100000263514.A.e.a.b.a.b.a.a.a.b.a.a.a.b ENSGT00940000163269 ENSGT00940000160468.e.b ENSGT00940000160468.e.a.b ENSGT00940000161926 ENSGT00940000162523 ENSGT00940000162346 ENSGT00940000160894 ENSGT01100000263474.a.a.c.a ##36 ENSGT00940000161385 ENSGT00950000183108.a ENSGT00940000155112.B ENSGT00390000010830 ENSGT00940000153717.a.a ENSGT00530000068834 Hystricomorpha_a ANCESTRAL SPECIES 48 ENSGT01050000244828.c.b.b.a.a.b ENSGT01090000260018.D.d.b ENSGT00940000162956 ENSGT00390000002062 ENSGT00940000161530 ENSGT00940000158017 ENSGT01100000263506.a.e.a.a.a.b.a.a.b.a.a #14 ENSGT00940000163525 ENSGT01100000263517.b.d.m.a.a.b ENSGT00940000163082 ENSGT01100000263559.B #32 ENSGT01100000263559.A.f.d.b #25 ENSGT01100000263514.A.e.a.b.a.b.a.a.a.b.a.a.a.a ENSGT00940000163269 ENSGT00940000160468.e.b ENSGT00940000160468.e.a.b ENSGT00940000161926 ENSGT00940000162523 ENSGT00940000162346 ENSGT00940000160894 ENSGT01100000263474.a.a.c.a ##36 ENSGT00940000161385 ENSGT00950000183108.a ENSGT00940000155112.B ENSGT00390000010830 ENSGT00940000153717.a.a ENSGT00530000068834 Hystricomorpha_b ANCESTRAL SPECIES 58 ENSGT01100000263517.b.d.m.a.a.b ENSGT00940000163082 ENSGT01100000263559.B #32 ENSGT01100000263559.A.f.d.b #25 ENSGT01100000263506.a.e.a.a.a.b.a.a.a.s #14 ENSGT01100000263514.A.e.a.b.a.b.a.a.a.a ENSGT00940000162950 ENSGT01100000263506.a.e.a.a.a.b.a.a.b.a.b.a.a.a #14 ENSGT01060000248528.b.kh.yb.b ENSGT00940000153118.db.a.a.a ENSGT01100000263514.A.e.a.b.a.b.a.a.a.b.a.a.a.a ENSGT00940000163269 ENSGT00940000160468.e.b ENSGT00940000160468.e.a.b ENSGT00940000161926 ENSGT00940000162523 ENSGT00940000162346 ENSGT00940000160894 ENSGT01100000263474.a.a.c.a ##36 Degu MODERN SPECIES 160 SLC17A1 (ENSODEG00000014265) SLC17A3 (ENSODEG00000013677) SLC17A2 (ENSODEG00000013372) ENSODEG00000020246 ENSODEG00000020110 H1-1 (ENSODEG00000020218) ENSODEG00000013990 #32 HFE (ENSODEG00000015440) ENSODEG00000013476 #14 ENSODEG00000013294 ENSODEG00000015259 ENSODEG00000013335 ENSODEG00000013815 ENSODEG00000013885 #25 ENSODEG00000013667 #32 ENSODEG00000013504 #25 ENSODEG00000015343 ENSODEG00000014935 ENSODEG00000020041 BTN2A2 (ENSODEG00000013492) BTN1A1 (ENSODEG00000013656) ABT1 (ENSODEG00000014676) ENSODEG00000012485 ENSODEG00000012723 ENSODEG00000013745 OR14J1 (ENSODEG00000020074) Guinea pig MODERN SPECIES 38 OR14J1 (ENSCPOG00000011597) ENSCPOG00000009070 ZNF322 (ENSCPOG00000001020) ABT1 (ENSCPOG00000035744) BTN1A1 (ENSCPOG00000031494) BTN2A2 (ENSCPOG00000001363) ENSCPOG00000039303 ENSCPOG00000036966 ENSCPOG00000040673 #14 ENSCPOG00000033212 ENSCPOG00000038998 ENSCPOG00000039392 #25 ENSCPOG00000030495 ENSCPOG00000040045 ENSCPOG00000030992 #14 ENSCPOG00000031052 #14 H2BC6 (ENSCPOG00000033590) #14 ENSCPOG00000038987 #14 ENSCPOG00000007747 HFE (ENSCPOG00000031763) H1-2 (ENSCPOG00000005522) H2BC3 (ENSCPOG00000032375) ENSCPOG00000036445 ENSCPOG00000032921 ENSCPOG00000038477 ENSCPOG00000031982 H1-1 (ENSCPOG00000012027) Euarchontoglires ANCESTRAL SPECIES ENSGT01100000263567.a.a #35 ENSGT01100000263506.a.e.a.a.a.b.b.a.a.a #14 ENSGT01100000263506.a.e.a.a.a.b.a.a.b.a.b.a.a.b #14 ENSGT00940000153125.D.a.a ENSGT01100000263514.A.e.a.b.a.b.a.a.a.b.a.b ENSGT01020000230360.c.b.a.b.a.b ##31 ENSGT01100000263514.A.e.a.a ENSGT00940000155501.a.b ENSGT00990000203553.c.b #28 ENSGT01060000248528.b.kh.xb.b.a ENSGT01100000263474.a.b.b.e.a.a.a.a ##36 ENSGT00940000153118.db.a.b ENSGT01060000248528.b.kh.yb.a.a ENSGT01100000263506.a.f.b #14 ENSGT01060000248528.b.kh.yb.a.b ENSGT01100000263559.A.f.e #25 ENSGT01100000263506.a.e.b #14 ENSGT01050000244808.A.b.b.a ENSGT00950000183190.a.b.a.b ENSGT00420000029746.f ENSGT00950000183112.b.b ENSGT00940000158522 ENSGT01060000248645 ENSGT00390000012355.B.b ENSGT00390000005869.a ENSGT00730000111185 ENSGT01050000244841.A.a.b ENSGT00390000014273.b ENSGT00940000158423 ENSGT00530000063074.a ENSGT01030000234539.a.a.b.a.a Primates ANCESTRAL SPECIES 7 ENSGT00940000160276 ENSGT00870000136537 ENSGT00950000182940.b.a.b ENSGT00510000048165 ENSGT00940000153118.db.a.a.b.a.b ENSGT00940000153118.db.a.a.b.a.a ENSGT01100000263474.a.b.b.e.a.a.b ##36 ENSGT01100000263506.a.e.a.a.a.b.a.a.b.a.a #14 ENSGT01060000248528.b.jh.b ENSGT01100000263514.A.e.a.b.a.b.a.a.a.a ENSGT00940000153092.a.a.c.a.a ENSGT01100000263575.A ENSGT00940000156302 ENSGT01100000263559.B #32 ENSGT01100000263506.a.e.a.b #14 ENSGT01100000263559.A.f.e #25 ENSGT01100000263506.a.e.b #14 ENSGT01050000244808.A.b.b.a ENSGT00950000183190.a.b.a.b ENSGT00420000029746.f ENSGT00950000183112.b.b ENSGT00940000158522 ENSGT01060000248645 ENSGT00390000012355.B.b ENSGT00390000005869.a ENSGT00730000111185 ENSGT01050000244841.A.a.b ENSGT00390000014273.b ENSGT00940000158423 ENSGT00530000063074.a ENSGT01030000234539.a.a.b.a.a Strepsirrhini ANCESTRAL SPECIES 29 ENSGT00940000159644 ENSGT00940000163521 ENSGT00940000161576 ENSGT00940000163165 ENSGT00940000163388 ENSGT00940000163486 ENSGT01100000263486.a.b.a.a.a.a.a.b.a.b.b.b ENSGT01100000263486.a.b.a.a.a.a.a.b.a.b.b.a ENSGT01100000263486.a.b.a.b.a ENSGT01100000263486.a.b.b ENSGT01100000263486.a.a ENSGT01100000263548.a.b.b ENSGT01100000263575.B.u ENSGT00940000156302 ENSGT01100000263559.B #32 ENSGT01100000263559.A.f.e #25 ENSGT01060000248528.b.kh.yb.b ENSGT01100000263514.A.e.a.b.a.b.a.a.a.b.a.a.a.a ENSGT00940000160426 ENSGT01100000263506.a.e.a.a.a.b.a.a.a #14 ENSGT00940000153092.a.a.c.a.a ENSGT01100000263514.A.e.a.b.a.b.a.a.a.b.a.b ENSGT01100000263514.A.e.a.b.a.b.a.b ENSGT00940000163082 ENSGT00940000162950 ENSGT01100000263474.a.b.b.e.a.a.b ##36 ENSGT00940000162941 ENSGT00940000153104.e.b.a.b ENSGT00940000160281 ENSGT00940000153125.A ENSGT01100000263506.a.e.a.a.a.a.b.b #14 Bushbaby MODERN SPECIES 289 CIART (ENSOGAG00000004846) APH1A (ENSOGAG00000004843) CA14 (ENSOGAG00000004842) ANP32E (ENSOGAG00000004841) PLEKHO1 (ENSOGAG00000006275) VPS45 (ENSOGAG00000006271) OTUD7B (ENSOGAG00000030526) MTMR11 (ENSOGAG00000006266) SF3B4 (ENSOGAG00000006265) SV2A (ENSOGAG00000006260) BOLA1 (ENSOGAG00000032964) H2AC21 (ENSOGAG00000006258) H2AC20 (ENSOGAG00000006256) ENSOGAG00000006255 ENSOGAG00000027485 H3-7 (ENSOGAG00000006253) #25 H2BC18 (ENSOGAG00000032731) #14 FCGR1A (ENSOGAG00000014101) ENSOGAG00000024879 ENSOGAG00000028082 Lemuriformes ANCESTRAL SPECIES 58 ENSGT01100000263506.a.e.a.a.a.b.a.a.b.a.b.b #14 ENSGT00940000153092.a.a.c.a.b ENSGT01100000263514.A.e.a.b.a.b.a.a.a.a ENSGT00940000163525 ENSGT01100000263506.a.e.a.a.a.b.a.a.b.a.b.a.a.a #14 ENSGT00940000153092.a.a.c.a.a ENSGT01100000263514.A.e.a.b.a.b.a.a.a.b.a.b ENSGT00940000155501.a.b ENSGT00990000203553.c.b #28 ENSGT01100000263567.a.a #35 ENSGT01100000263474.a.b.b.e.a.a.a.a ##36 ENSGT01100000263506.a.e.a.a.a.b.b.a.a.a #14 ENSGT01100000263548.a.b.b ENSGT01100000263575.B.u ENSGT00940000156302 ENSGT01100000263559.A.f.e #25 ENSGT01060000248528.b.kh.yb.b ENSGT01100000263514.A.e.a.b.a.b.a.a.a.b.a.a.a.a ENSGT00940000160426 ENSGT01100000263506.a.e.a.a.a.b.a.a.a #14 ENSGT01100000263506.a.e.a.a.a.a.a #14 ENSGT01060000248528.b.jh.a.b ENSGT01100000263506.a.e.a.a.a.a.b.b #14 ENSGT00940000153125.B ENSGT00940000153125.C ENSGT00940000160281 ENSGT00940000153104.e.b.a.b ENSGT00940000162941 ENSGT00940000153125.E.d ENSGT01100000263474.a.b.b.e.a.a.a.b ##36 ENSGT00420000029746.f Lemuriformes_a ANCESTRAL SPECIES 19 ENSGT01100000263548.a.b.b ENSGT01100000263575.B.u ENSGT00940000156302 ENSGT01100000263559.A.f.e #25 ENSGT00940000153118.db.a.a.b.a.a ENSGT00510000048165 ENSGT00950000182940.b.a.b ENSGT00870000136537 ENSGT00940000160276 ENSGT00940000159172 ENSGT00550000075028 ENSGT00530000063760.b ENSGT00950000182907.a.a ENSGT00940000156893 ENSGT00390000002049.c.a ENSGT00390000003103 ENSGT00390000018360 ENSGT00500000045038 ENSGT00390000011497 Greater bamboo lemur MODERN SPECIES 1644 ENSPSMG00000003529 ENSPSMG00000003539 ENSPSMG00000003546 #25 ENSPSMG00000003549 H2BC18 (ENSPSMG00000003555) #14 FCGR1A (ENSPSMG00000003570) ENSPSMG00000003576 ENSPSMG00000003579 Coquerels sifaka MODERN SPECIES 750 ENSPCOG00000015554 FCGR1A (ENSPCOG00000016186) H3C13 (ENSPCOG00000011308) #32 ENSPCOG00000011101 ENSPCOG00000005500 ENSPCOG00000011625 ENSPCOG00000012693 #25 H2BC21 (ENSPCOG00000010375) H2AC20 (ENSPCOG00000011857) SV2A (ENSPCOG00000018151) SF3B4 (ENSPCOG00000015399) MTMR11 (ENSPCOG00000027870) OTUD7B (ENSPCOG00000028177) VPS45 (ENSPCOG00000011875) PLEKHO1 (ENSPCOG00000027826) ANP32E (ENSPCOG00000022218) CA14 (ENSPCOG00000025811) APH1A (ENSPCOG00000016266) C1orf54 (ENSPCOG00000006128) CIART (ENSPCOG00000018797) ENSPCOG00000023504 PRPF3 (ENSPCOG00000013828) Haplorrhini ANCESTRAL SPECIES 2 ENSGT00940000162346 ENSGT00940000162523 ENSGT00940000161926 ENSGT00940000160468 ENSGT00940000163269 ENSGT01100000263514.A.e.a.b.a.b.a.b ENSGT00940000163082 ENSGT01100000263517.b.d.m.a.a.b ENSGT01060000248528.b.kh.yb.b ENSGT01100000263506.a.e.a.a.a.b.a.a.b.a.b.a.a.a #14 ENSGT00940000153092.a.b.f ENSGT00940000155501.a.a ENSGT01100000263474.a.b.b.e.a.a.a.b ##36 ENSGT01100000263506.a.e.a.a.a.b.a.a.b.a.a #14 ENSGT01060000248528.b.jh.b ENSGT01100000263559.A.f.e #25 ENSGT01100000263575.B.u ENSGT00940000160426 ENSGT01100000263514.A.e.a.b.a.b.a.a.a.b.a.a.a.a ENSGT00940000153125.A ENSGT01100000263506.a.e.a.a.a.a.b.a #14 ENSGT01060000248528.b.jh.a.b ENSGT00940000158017 ENSGT00940000162723 ENSGT00940000163835 ENSGT00940000161530 ENSGT00950000182802.B.a.a.b ENSGT00390000002062 ENSGT00940000162956 ENSGT01100000263506.a.e.a.a.a.b.b.b #14 ENSGT00940000153125.D.a.b Tarsier MODERN SPECIES 4185 H2AC19 (ENSTSYG00000031574) ENSTSYG00000033807 #25 ENSTSYG00000033976 H2BC18 (ENSTSYG00000026570) #14 FCGR1A (ENSTSYG00000008821) Simiiformes ANCESTRAL SPECIES 5 ENSGT00940000162346 ENSGT00940000162523 ENSGT00940000161926 ENSGT00940000160468 ENSGT00940000163269 ENSGT01100000263514.A.e.a.b.a.b.a.b ENSGT00940000163082 ENSGT01100000263517.b.d.m.a.a.b ENSGT01060000248528.b.kh.yb.b.a ENSGT01100000263506.a.e.a.a.a.b.a.a.b.a.b.a.a.a #14 ENSGT00940000153092.a.b.f ENSGT00940000155501.a.a ENSGT01100000263474.a.b.b.e.a.a.a.b ##36 ENSGT01100000263506.a.e.a.a.a.b.a.a.b.a.a #14 ENSGT01060000248528.b.jh.b ENSGT01100000263559.A.f.e #25 ENSGT01060000248528.b.kh.yb.b.b.a.a ENSGT01100000263514.A.e.a.b.a.b.a.a.a.b.a.a.b ENSGT01100000263575.B.u ENSGT00940000160426 ENSGT01100000263514.A.e.a.b.a.b.a.a.a.b.a.a.a.a ENSGT00940000153125.A ENSGT01100000263506.a.e.a.a.a.a.b.a #14 ENSGT01060000248528.b.kh.yb.b.b.b.a ENSGT01060000248528.b.jh.a.b ENSGT00940000162723 ENSGT00940000158017 ENSGT00940000163036 ENSGT00940000163835 ENSGT00940000161530 ENSGT00950000182802.B.a.a.b Platyrrhini ANCESTRAL SPECIES 12 ENSGT00390000002049.c.a ENSGT00940000156893 ENSGT00950000182907.a.a ENSGT00530000063760.b ENSGT00550000075028 ENSGT00940000159172 ENSGT00940000160276 ENSGT00870000136537.o ENSGT00950000182940.b.a.b ENSGT00510000048165 ENSGT00940000153118.db.a.a.b.a.b ENSGT00940000153118.db.a.a.b.a.a ENSGT01100000263575.B.t.a.a.a ENSGT01100000263559.B #32 ENSGT00940000156302 ENSGT01100000263559.A.f.e #25 ENSGT01060000248528.b.kh.yb.b.b.a.a ENSGT01100000263506.a.e.b #14 ENSGT01050000244808.A.b.b.a ENSGT00950000183112.b.b ENSGT00940000158522 ENSGT01060000248645 ENSGT00390000012355.B.b ENSGT00390000005869.a ENSGT00730000111185 ENSGT01050000244841.A.a.b ENSGT00390000014273.b ENSGT00940000158423 ENSGT00530000063074.a ENSGT01030000234539.a.a.b.a.a ENSGT00390000013847 Cebidae ANCESTRAL SPECIES 12 ENSGT00390000002049.c.a ENSGT00940000156893 ENSGT00950000182907.a.a ENSGT00530000063760.b ENSGT00550000075028 ENSGT00940000159172 ENSGT00940000160276 ENSGT00870000136537.o ENSGT00950000182940.b.a.b ENSGT00510000048165 ENSGT00940000153118.db.a.a.b.a.b ENSGT00940000153118.db.a.a.b.a.a ENSGT01100000263575.B.t.a.a.a ENSGT01100000263559.B #32 ENSGT00940000156302 ENSGT01100000263559.A.f.e #25 ENSGT01060000248528.b.kh.yb.b.b.a.a ENSGT01100000263506.a.e.b #14 ENSGT01050000244808.A.b.b.a ENSGT00950000183112.b.b ENSGT00940000158522 ENSGT01060000248645 ENSGT00390000012355.B.b ENSGT00390000005869.a ENSGT00730000111185 ENSGT01050000244841.A.a.b ENSGT00390000014273.b ENSGT00940000158423 ENSGT00530000063074.a ENSGT01030000234539.a.a.b.a.a ENSGT00390000013847 Marmoset MODERN SPECIES 9 CA14 (ENSCJAG00000009756) ANP32E (ENSCJAG00000009710) PLEKHO1 (ENSCJAG00000000867) VPS45 (ENSCJAG00000000845) OTUD7B (ENSCJAG00000000821) MTMR11 (ENSCJAG00000000802) SF3B4 (ENSCJAG00000042351) SV2A (ENSCJAG00000000779) BOLA1 (ENSCJAG00000044018) H2AC20 (ENSCJAG00000048427) H2BC21 (ENSCJAG00000081464) ENSCJAG00000086954 ENSCJAG00000078934 #32 ENSCJAG00000078694 H2AC18 (ENSCJAG00000073890) ENSCJAG00000083438 #25 ENSCJAG00000087228 H2BC18 (ENSCJAG00000041683) #14 ENSCJAG00000074017 FCGR1A (ENSCJAG00000000771) ENSCJAG00000069867 ENSCJAG00000084089 ENSCJAG00000078453 ENSCJAG00000062347 ENSCJAG00000020687 ENSCJAG00000084541 ENSCJAG00000081006 ENSCJAG00000083457 ENSCJAG00000086209 HJV (ENSCJAG00000041142) TXNIP (ENSCJAG00000002161) Cebidae_a ANCESTRAL SPECIES 6 ENSGT00390000003103 ENSGT00390000002049.c.a ENSGT00940000156893 ENSGT00950000182907.a.a ENSGT00530000063760.b ENSGT00550000075028 ENSGT00940000159172 ENSGT00940000160276 ENSGT00870000136537.o ENSGT00950000182940.b.a.b ENSGT00940000153118.db.a.a.b.a.b ENSGT00940000153118.db.a.a.b.a.a ENSGT01100000263575.B.t.a.a.a ENSGT01100000263559.B #32 ENSGT00940000156302 ENSGT01100000263559.A.f.e #25 ENSGT01100000263506.a.e.b #14 ENSGT01050000244808.A.b.b.a Bolivian squirrel monkey MODERN SPECIES 194 APH1A (ENSSBOG00000025150) CA14 (ENSSBOG00000024949) ANP32E (ENSSBOG00000033935) PLEKHO1 (ENSSBOG00000031989) VPS45 (ENSSBOG00000029517) OTUD7B (ENSSBOG00000022601) MTMR11 (ENSSBOG00000018459) ENSSBOG00000012310 SV2A (ENSSBOG00000030706) H2AC21 (ENSSBOG00000017659) H2AC20 (ENSSBOG00000019840) ENSSBOG00000008360 ENSSBOG00000015704 ENSSBOG00000014986 #32 H2AC19 (ENSSBOG00000019167) H3-7 (ENSSBOG00000018931) #25 H2BC18 (ENSSBOG00000030913) #14 FCGR1A (ENSSBOG00000035681) Capuchin MODERN SPECIES 188 ENSCCAG00000036223 H2BC18 (ENSCCAG00000036311) #14 ENSCCAG00000029951 ##28 ENSCCAG00000013177 #25 H2AC18 (ENSCCAG00000020282) ENSCCAG00000026615 ENSCCAG00000000823 #25 ENSCCAG00000034681 ##28 H2BC21 (ENSCCAG00000020545) H2AC20 (ENSCCAG00000005773) H2AC21 (ENSCCAG00000020094) SV2A (ENSCCAG00000035849) ENSCCAG00000021751 MTMR11 (ENSCCAG00000035057) OTUD7B (ENSCCAG00000036948) VPS45 (ENSCCAG00000037065) PLEKHO1 (ENSCCAG00000033185) ENSCCAG00000020910 CA14 (ENSCCAG00000023681) APH1A (ENSCCAG00000036376) C1orf54 (ENSCCAG00000032327) CIART (ENSCCAG00000027921) Catarrhini ANCESTRAL SPECIES 10 ENSGT00550000075028 ENSGT00940000159172 ENSGT00940000160276 ENSGT00870000136537.m ENSGT00950000182940.b.a.b ENSGT00510000048165 ENSGT00940000153118.db.a.a.b.a.b ENSGT00940000153118.db.a.a.b.a.a ENSGT01100000263575.A ENSGT00940000153092.a.a.c.a.a ENSGT01100000263514.A.e.a.b.a.b.a.a.a.b.a.b ENSGT01020000230360.c.b.a.b.a.b ##31 ENSGT01060000248528.b.kh.yb.b.b.b.b ENSGT01100000263514.A.e.a.a ENSGT01060000248528.b.jh.b ENSGT01100000263559.A.f.e #25 ENSGT01100000263506.a.e.b #14 ENSGT01050000244808.A.b.b.a ENSGT00940000160915.e.b ENSGT00950000183190.a.b.a.b ENSGT00950000183112.b.b ENSGT00940000158522 ENSGT01060000248645 ENSGT00390000012355.B.b ENSGT00390000005869.a ENSGT00730000111185 ENSGT01050000244841.A.a.b ENSGT00390000014273.b ENSGT00940000158423 ENSGT00530000063074.a ENSGT01030000234539.a.a.b.a.a Cercopithecidae ANCESTRAL SPECIES 4 ENSGT00940000162941 ENSGT00910000147164 ENSGT00910000147195 ENSGT00950000183105.B.a.a.a.a ENSGT01100000263506.a.f.b #14 ENSGT01060000248528.b.kh.yb.a.b ENSGT01100000263548.a.b.b ENSGT01100000263575.B.u ENSGT00940000153125.E.c.b ENSGT01100000263514.A.e.a.b.a.b.a.a.a.b.a.a.a.a ENSGT00940000153125.A ENSGT01100000263474.a.b.b.e.a.a.a.a ##36 ENSGT01100000263567.a.b ##35 ENSGT01100000263506.a.e.a.a.a.b.a.a.a #14 ENSGT01060000248528.b.kh.yb.b.a.lb.a ENSGT01100000263559.A.f.e #25 ENSGT00940000156302 ENSGT01100000263559.B #32 ENSGT01060000248528.b.jh.b ENSGT01100000263514.A.e.a.b.a.b.a.a.a.a ENSGT00940000153092.a.a.c.a.a ENSGT01100000263575.A ENSGT01100000263514.A.e.a.b.a.b.a.a.b ENSGT01060000248528.b.kh.yb.b.b.b.b ENSGT01020000230360.c.b.a.b.a.b ##31 ENSGT01100000263514.A.e.a.b.a.b.a.a.a.b.a.b ENSGT00940000153125.D.a.a ENSGT01100000263474.a.b.b.e.a.a.a.b ##36 ENSGT00940000162950 ENSGT00940000163388 ENSGT00940000163165 Cercopithecinae ANCESTRAL SPECIES ENSGT00390000003103 ENSGT00390000002049.c.a ENSGT00940000156893 ENSGT00950000182907.a.a ENSGT00530000063760.b ENSGT00550000075028 ENSGT00940000159172 ENSGT00940000160276 ENSGT00870000136537.m ENSGT00950000182940.b.a.b ENSGT00510000048165 ENSGT00940000153118.db.a.a.b.a.b ENSGT00940000153118.db.a.a.b.a.a ENSGT01100000263575.B.t.a.b ENSGT01060000248528.b.kh.yb.b.a.lb.a ENSGT01100000263559.A.f.e #25 ENSGT01100000263506.a.e.b #14 ENSGT01050000244808.A.b.b.a ENSGT00420000029746.f.c.b ENSGT00910000147134 ENSGT01050000244864.D ENSGT01030000234531.A.b.b.b.b.b.e.b.a ENSGT01050000244864.C ENSGT00940000158408 ENSGT00730000110915.b ENSGT00940000159402 ENSGT00940000160493 ENSGT00940000159284 ENSGT00420000029746.e.a.b.b.b.a ENSGT00950000183112.b.b ENSGT00940000158522 Vervet Monkey MODERN SPECIES 43 H2AC19 (ENSCSAG00000000206) ENSCSAG00000000205 #25 Cercopithecinae_a ANCESTRAL SPECIES ENSGT00390000003103 ENSGT00390000002049.c.a ENSGT00940000156893 ENSGT00950000182907.a.a ENSGT00530000063760.b ENSGT00550000075028 ENSGT00940000159172 ENSGT00940000160276 ENSGT00870000136537.m ENSGT00950000182940.b.a.b ENSGT00510000048165 ENSGT00940000153118.db.a.a.b.a.b ENSGT00940000153118.db.a.a.b.a.a ENSGT01100000263575.B.t.a.b ENSGT01060000248528.b.kh.yb.b.a.lb.a ENSGT01100000263559.A.f.e #25 ENSGT01100000263506.a.e.b #14 ENSGT01050000244808.A.b.b.a ENSGT00940000160915.e.b ENSGT00950000183190.a.b.a.b ENSGT00420000029746.f.c.b.a ENSGT00390000009543.d ENSGT00420000029746.f.c.a ENSGT00420000029746.f.c.b.b ENSGT00400000022759 ENSGT00910000147134 ENSGT01050000244864.D ENSGT01030000234531.A.b.b.b.b.b.e.b.a ENSGT01050000244864.C ENSGT00940000158408 ENSGT00730000110915.b Cercopithecinae_b ANCESTRAL SPECIES 134 ENSGT01060000248528.b.kh.yb.b.a.lb.a ENSGT01100000263559.A.f.e #25 Cercopithecinae_d ANCESTRAL SPECIES 131 ENSGT00940000156302 ENSGT01100000263559.B #32 ENSGT01060000248528.b.kh.yb.b.a.lb.a ENSGT01100000263559.A.f.e #25 ENSGT01100000263506.a.e.b #14 ENSGT01050000244808.A.b.b.a ENSGT00940000160915.e.b ENSGT00420000029746.f.c.b.a ENSGT00390000009543.d ENSGT00420000029746.f.c.a ENSGT00420000029746.f.c.b.b ENSGT00400000022759 ENSGT00940000154913.g.b ENSGT00910000147134 ENSGT01050000244864.D ENSGT01050000244864.C ENSGT00940000158408 ENSGT00730000110915.b ENSGT00940000159402 Drill MODERN SPECIES 1144 ENSMLEG00000013337 ENSMLEG00000014337 ENSMLEG00000024345 H3-7 (ENSMLEG00000010141) #25 H2BC18 (ENSMLEG00000038899) #14 FCGR1A (ENSMLEG00000029459) ENSMLEG00000035616 ENSMLEG00000037359 ENSMLEG00000030019 ENSMLEG00000036897 ENSMLEG00000037305 GJA8 (ENSMLEG00000031211) GJA5 (ENSMLEG00000020313) ACP6 (ENSMLEG00000030267) BCL9 (ENSMLEG00000034454) ENSMLEG00000029668 Macaca ANCESTRAL SPECIES 79 ENSGT00940000156302 ENSGT01100000263559.A.f.e #25 Macaca_a ANCESTRAL SPECIES ENSGT01100000263559.A.f.e #25 Rhesus MODERN SPECIES 14 H2AC12 (ENSMMUG00000061750) H2BC12 (ENSMMUG00000058189) #14 H4C9 (ENSMMUG00000057258) H2AC11 (ENSMMUG00000052414) H2BC11 (ENSMMUG00000040348) #14 ZNF322 (ENSMMUG00000017480) ENSMMUG00000055937 ABT1 (ENSMMUG00000060813) HMGN4 (ENSMMUG00000029909) BTN1A1 (ENSMMUG00000023008) BTN2A2 (ENSMMUG00000065003) BTN3A3 (ENSMMUG00000021971) H4C8 (ENSMMUG00000059737) H3C8 (ENSMMUG00000054702) H2BC9 (ENSMMUG00000045038) #14 H3C7 (ENSMMUG00000051224) #25 H4C6 (ENSMMUG00000060751) H1-3 (ENSMMUG00000022050) H3C6 (ENSMMUG00000055425) H2AC8 (ENSMMUG00000060663) H2BC8 (ENSMMUG00000063339) #14 H4C5 (ENSMMUG00000060950) H2BC7 (ENSMMUG00000052621) #14 ENSMMUG00000041744 H4C4 (ENSMMUG00000056028) H2BC6 (ENSMMUG00000061648) #14 H2BC5 (ENSMMUG00000041727) ##36 H1-4 (ENSMMUG00000023748) H2AC6 (ENSMMUG00000060294) H2BC4 (ENSMMUG00000057462) #14 H1-6 (ENSMMUG00000051980) Pig-tailed macaque MODERN SPECIES 556 ENSMNEG00000039748 ENSMNEG00000038867 ENSMNEG00000040511 ENSMNEG00000040861 ENSMNEG00000043241 ENSMNEG00000039666 ENSMNEG00000034285 ENSMNEG00000042265 ENSMNEG00000042893 FCGR1A (ENSMNEG00000033591) H2BC18 (ENSMNEG00000038342) #14 H3C13 (ENSMNEG00000026749) #32 ENSMNEG00000007282 ENSMNEG00000034002 H2AC19 (ENSMNEG00000011270) ENSMNEG00000015126 #25 Rhinopithecus ANCESTRAL SPECIES 710 ENSGT01100000263559.A.f.e #25 ENSGT01100000263506.a.e.b #14 ENSGT01050000244808.A.b.b.a ENSGT00940000160915.e.b ENSGT00950000183190.a.b.a.b Black snub-nosed monkey MODERN SPECIES 846 H3-7 (ENSRBIG00000015383) #25 H2BC18 (ENSRBIG00000035220) #14 FCGR1A (ENSRBIG00000038615) ENSRBIG00000035418 ENSRBIG00000040328 ENSRBIG00000036231 ENSRBIG00000040725 Golden snub-nosed monkey DUPLICATION Golden snub-nosed monkey MODERN SPECIES 1730 H3-7 (ENSRROG00000015656) #25 FCGR1A (ENSRROG00000040166) H2BC18 (ENSRROG00000029908) #14 ENSRROG00000032255 Golden snub-nosed monkey MODERN SPECIES 161 ENSRROG00000038449 #25 Hominoidea ANCESTRAL SPECIES 7 ENSGT00390000018360 ENSGT00390000003103 ENSGT00390000002049.c.a ENSGT00940000156893 ENSGT00950000182907.a.a ENSGT00530000063760.b ENSGT00550000075028 ENSGT00940000159172 ENSGT00940000160276 ENSGT00870000136537.m ENSGT00950000182940.b.a.b ENSGT00510000048165 ENSGT00940000153118.db.a.a.b.a.b ENSGT00940000153118.db.a.a.b.a.a ENSGT01100000263575.B.u ENSGT01100000263559.A.f.e #25 ENSGT01100000263506.a.e.b #14 ENSGT01050000244808.A.b.b.a ENSGT00940000160915.e.b ENSGT00950000183190.a.b.a.b ENSGT00390000009543.d ENSGT00420000029746.f.c Hominidae ANCESTRAL SPECIES 6 ENSGT00390000018360 ENSGT00390000003103 ENSGT00390000002049.c.a ENSGT00940000156893 ENSGT00950000182907.a.a ENSGT00530000063760.b ENSGT00550000075028 ENSGT00940000159172 ENSGT00940000160276 ENSGT00870000136537.m ENSGT00950000182940.b.a.b ENSGT00510000048165 ENSGT00940000153118.db.a.a.b.a.b ENSGT00940000153118.db.a.a.b.a.a ENSGT01100000263575.B.u ENSGT01100000263559.A.f.e #25 ENSGT01100000263506.a.e.b #14 ENSGT01050000244808.A.b.b.a ENSGT00940000160915.e.b ENSGT00950000183190.a.b.a.b ENSGT00390000009543.d ENSGT00420000029746.f.c Homo/Pan/Gorilla group ANCESTRAL SPECIES 6 ENSGT00390000018360 ENSGT00390000003103 ENSGT00390000002049.c.a ENSGT00940000156893 ENSGT00950000182907.a.a ENSGT00530000063760.b ENSGT00550000075028 ENSGT00940000159172 ENSGT00940000160276 ENSGT00870000136537.m ENSGT00950000182940.b.a.b ENSGT00510000048165 ENSGT00940000153118.db.a.a.b.a.b ENSGT00940000153118.db.a.a.b.a.a ENSGT01100000263575.B.u ENSGT01100000263559.A.f.e #25 ENSGT01100000263506.a.e.b #14 ENSGT01050000244808.A.b.b.a ENSGT00940000160915.e.b ENSGT00390000009543.d ENSGT00420000029746.f.c Gorilla MODERN SPECIES PLEKHO1 (ENSGGOG00000002021) VPS45 (ENSGGOG00000026516) OTUD7B (ENSGGOG00000024965) MTMR11 (ENSGGOG00000004764) SF3B4 (ENSGGOG00000004761) SV2A (ENSGGOG00000002959) BOLA1 (ENSGGOG00000002957) H2AC21 (ENSGGOG00000040311) HIST2H2AC (ENSGGOG00000040152) H2BC21 (ENSGGOG00000036989) ENSGGOG00000036863 HIST2H3A (ENSGGOG00000037264) #32 HIST2H2AA3 (ENSGGOG00000040128) ENSGGOG00000040718 #14 HIST2H2AA3 (ENSGGOG00000043514) HIST2H3A (ENSGGOG00000041476) #25 ENSGGOG00000039364 ENSGGOG00000036188 ENSGGOG00000041808 #14 ENSGGOG00000039911 ENSGGOG00000037739 ENSGGOG00000037973 ENSGGOG00000041997 ENSGGOG00000039869 ENSGGOG00000043630 ENSGGOG00000040707 ENSGGOG00000015122 ENSGGOG00000023207 ENSGGOG00000041180 ENSGGOG00000016010 ENSGGOG00000005749 Homo/Pan group ANCESTRAL SPECIES 7 ENSGT00390000018360 ENSGT00390000003103 ENSGT00390000002049.c.a ENSGT00940000156893 ENSGT00950000182907.a.a ENSGT00530000063760.b ENSGT00550000075028 ENSGT00940000159172 ENSGT00940000160276 ENSGT00870000136537.m ENSGT00950000182940.b.a.b ENSGT00510000048165 ENSGT00940000153118.db.a.a.b.a.b ENSGT00940000153118.db.a.a.b.a.a ENSGT01100000263575.B.u ENSGT01100000263559.A.f.e #25 ENSGT01100000263506.a.e.b #14 ENSGT01050000244808.A.b.b.a ENSGT00940000160915.e.b ENSGT00390000009543.d ENSGT00420000029746.f.c Human MODERN SPECIES PIAS3 (ENSG00000131788) NUDT17 (ENSG00000186364) POLR3C (ENSG00000186141) RNF115 (ENSG00000265491) CD160 (ENSG00000117281) PDZK1 (ENSG00000174827) GPR89A (ENSG00000117262) NBPF20 (ENSG00000162825) PPIAL4D (ENSG00000289549) FAM72D (ENSG00000215784) SRGAP2B (ENSG00000196369) PPIAL4F (ENSG00000279782) NBPF15 (ENSG00000266338) PPIAL4E (ENSG00000271567) FAM72C (ENSG00000263513) H3-7 (ENSG00000273213) #25 SRGAP2C (ENSG00000171943) FAM72B (ENSG00000188610) PPIAL4A (ENSG00000263353) NBPF26 (ENSG00000273136) NOTCH2NLR (ENSG00000286106) NBPF8 (ENSG00000270231) SEC22B (ENSG00000265808) NOTCH2 (ENSG00000134250) ADAM30 (ENSG00000134249) REG4 (ENSG00000134193) HMGCS2 (ENSG00000134240) PHGDH (ENSG00000092621) ZNF697 (ENSG00000143067) HSD3B1 (ENSG00000203857) HSD3B2 (ENSG00000203859) Pan ANCESTRAL SPECIES ENSGT00390000018360 ENSGT00390000003103 ENSGT00390000002049.c.a ENSGT00940000156893 ENSGT00950000182907.a.a ENSGT00530000063760.b ENSGT00550000075028 ENSGT00940000159172 ENSGT00940000160276 ENSGT00870000136537.m ENSGT00950000182940.b.a.b ENSGT00510000048165 ENSGT00940000153118.db.a.a.b.a.b ENSGT00940000153118.db.a.a.b.a.a ENSGT01100000263575.B.u ENSGT01100000263559.A.f.e #25 ENSGT01100000263506.a.e.b #14 ENSGT01050000244808.A.b.b.a ENSGT00940000160915.e.b ENSGT00390000009543.d.c ENSGT00420000029746.f.c.d ENSGT00910000147491.a ENSGT00420000029746.e.a.b.b.b.d ENSGT00910000145223.a.a ENSGT00390000009543.d.d ENSGT00420000029746.f.c.c ENSGT00940000160258.e ENSGT00940000155416.a.a ENSGT00940000157663 ENSGT00940000158169 ENSGT00390000015805 Bonobo DUPLICATION Bonobo MODERN SPECIES CIART (ENSPPAG00000043860) C1orf54 (ENSPPAG00000041323) APH1A (ENSPPAG00000033416) CA14 (ENSPPAG00000027877) ANP32E (ENSPPAG00000032079) PLEKHO1 (ENSPPAG00000035597) VPS45 (ENSPPAG00000039563) OTUD7B (ENSPPAG00000027439) MTMR11 (ENSPPAG00000030287) SF3B4 (ENSPPAG00000040904) SV2A (ENSPPAG00000028470) BOLA1 (ENSPPAG00000025235) H2AC21 (ENSPPAG00000019861) H2AC20 (ENSPPAG00000022736) H2BC21 (ENSPPAG00000025024) H3-7 (ENSPPAG00000023295) #25 H2BC18 (ENSPPAG00000020072) #14 FCGR1A (ENSPPAG00000039866) ENSPPAG00000036804 ENSPPAG00000032403 ENSPPAG00000034850 ENSPPAG00000029215 ENSPPAG00000020771 ENSPPAG00000028256 ENSPPAG00000042737 ENSPPAG00000028949 ENSPPAG00000028195 ENSPPAG00000033138 ENSPPAG00000033589 ENSPPAG00000027857 GSTM1 (ENSPPAG00000034147) Bonobo MODERN SPECIES 213 ENSPPAG00000032850 #32 ENSPPAG00000010106 ENSPPAG00000035334 ##36 ENSPPAG00000035234 ##36 ENSPPAG00000032669 #25 Chimpanzee DUPLICATION Chimpanzee MODERN SPECIES 319 H3C13 (ENSPTRG00000049585) #32 H2AC19 (ENSPTRG00000046303) ENSPTRG00000047237 ##36 ENSPTRG00000046524 ##36 ENSPTRG00000044548 H3C13 (ENSPTRG00000044724) #25 Chimpanzee MODERN SPECIES C1H1orf54 (ENSPTRG00000001251) APH1A (ENSPTRG00000001250) CA14 (ENSPTRG00000001249) ANP32E (ENSPTRG00000046939) PLEKHO1 (ENSPTRG00000001247) VPS45 (ENSPTRG00000001246) OTUD7B (ENSPTRG00000001245) MTMR11 (ENSPTRG00000001244) SF3B4 (ENSPTRG00000001243) SV2A (ENSPTRG00000001242) BOLA1 (ENSPTRG00000001241) H2AC21 (ENSPTRG00000047219) H2AC20 (ENSPTRG00000052021) H2BC21 (ENSPTRG00000050454) H4C6 (ENSPTRG00000001238) H3C13 (ENSPTRG00000044185) #25 H2BC18 (ENSPTRG00000047357) #14 FCGR1A (ENSPTRG00000001233) ENSPTRG00000051267 ENSPTRG00000046494 ENSPTRG00000047652 ENSPTRG00000047567 ENSPTRG00000023855 ENSPTRG00000046020 ENSPTRG00000050992 ENSPTRG00000030794 ENSPTRG00000051930 ENSPTRG00000045351 ENSPTRG00000050199 ENSPTRG00000030424 GSTM1 (ENSPTRG00000001061) Gibbon DUPLICATION Gibbon MODERN SPECIES 2 ACP6 (ENSNLEG00000000233) GJA5 (ENSNLEG00000034607) ENSNLEG00000031342 GJA8 (ENSNLEG00000000252) ENSNLEG00000029979 ENSNLEG00000031320 ENSNLEG00000033725 ENSNLEG00000034293 ENSNLEG00000035986 ENSNLEG00000033645 ENSNLEG00000009671 H2BC18 (ENSNLEG00000030888) #14 H3-7 (ENSNLEG00000034204) #25 H4C15 (ENSNLEG00000027152) ENSNLEG00000027903 ENSNLEG00000034350 #25 H2BC21 (ENSNLEG00000034437) H2AC20 (ENSNLEG00000031795) SV2A (ENSNLEG00000009675) ENSNLEG00000009693 MTMR11 (ENSNLEG00000009701) OTUD7B (ENSNLEG00000009731) VPS45 (ENSNLEG00000009742) ENSNLEG00000009769 ANP32E (ENSNLEG00000032790) CA14 (ENSNLEG00000009787) C1orf54 (ENSNLEG00000009825) APH1A (ENSNLEG00000009799) CIART (ENSNLEG00000009830) MRPS21 (ENSNLEG00000031023) PRPF3 (ENSNLEG00000009841) Gibbon MODERN SPECIES 2 APH1A (ENSNLEG00000009799) C1orf54 (ENSNLEG00000009825) CA14 (ENSNLEG00000009787) ANP32E (ENSNLEG00000032790) ENSNLEG00000009769 VPS45 (ENSNLEG00000009742) OTUD7B (ENSNLEG00000009731) MTMR11 (ENSNLEG00000009701) ENSNLEG00000009693 SV2A (ENSNLEG00000009675) H2AC20 (ENSNLEG00000031795) H2BC21 (ENSNLEG00000034437) ENSNLEG00000034350 #25 ENSNLEG00000027903 H4C15 (ENSNLEG00000027152) H3-7 (ENSNLEG00000034204) #25 H2BC18 (ENSNLEG00000030888) #14 ENSNLEG00000009671 ENSNLEG00000033645 ENSNLEG00000035986 ENSNLEG00000034293 ENSNLEG00000033725 ENSNLEG00000031320 ENSNLEG00000029979 GJA8 (ENSNLEG00000000252) ENSNLEG00000031342 GJA5 (ENSNLEG00000034607) ACP6 (ENSNLEG00000000233) BCL9 (ENSNLEG00000000223) ENSNLEG00000030334 CHD1L (ENSNLEG00000000179) Euarchontoglires_A ANCESTRAL SPECIES ENSGT00950000182907.a.a ENSGT00530000063760.b ENSGT00550000075028 ENSGT00940000159172 ENSGT00940000160276 ENSGT00870000136537 ENSGT00950000182940.b.a.b ENSGT00510000048165 ENSGT00940000153118.db.a.a.b.a.b ENSGT00940000153118.db.a.a.b.a.a ENSGT01100000263575.B.u ENSGT01100000263559.B #32 ENSGT00940000156302 ENSGT01100000263575.A ENSGT00940000153092.a.a.c.a.a ENSGT01100000263559.A.f.e #25 ENSGT01100000263506.a.e.b #14 ENSGT01050000244808.A.b.b.a ENSGT00950000183190.a.b.a.b ENSGT00420000029746.f ENSGT00950000183112.b.b ENSGT00940000158522 ENSGT01060000248645 ENSGT00390000012355.B.b ENSGT00390000005869.a ENSGT00730000111185 ENSGT01050000244841.A.a.b ENSGT00390000014273.b ENSGT00940000158423 ENSGT00530000063074.a ENSGT01030000234539.a.a.b.a.a Glires ANCESTRAL SPECIES ENSGT00950000182907.a.a ENSGT00530000063760.b ENSGT00550000075028 ENSGT00940000159172 ENSGT00940000160276 ENSGT00870000136537 ENSGT00950000182940.b.a.b ENSGT00510000048165 ENSGT00940000153118.db.a.a.b.a.b ENSGT00940000153118.db.a.a.b.a.a ENSGT01100000263575.B.u ENSGT01100000263559.B #32 ENSGT00940000156302 ENSGT01100000263575.A ENSGT00940000153092.a.a.c.a.a ENSGT01100000263559.A.f.e #25 ENSGT01100000263506.a.e.b #14 ENSGT01050000244808.A.b.b.a ENSGT00950000183190.a.b.a.b ENSGT00420000029746.f ENSGT00950000183112.b.b ENSGT00940000158522 ENSGT01060000248645 ENSGT00390000012355.B.b ENSGT00390000005869.a ENSGT00730000111185 ENSGT01050000244841.A.a.b ENSGT00390000014273.b ENSGT00940000158423 ENSGT00530000063074.a ENSGT01030000234539.a.a.b.a.a Lagomorpha ANCESTRAL SPECIES 1 ENSGT00390000002049.c.a ENSGT00940000156893 ENSGT00950000182907.a.a ENSGT00530000063760.b ENSGT00550000075028 ENSGT00940000159172 ENSGT00940000160276 ENSGT00870000136537 ENSGT00950000182940.b.a.b ENSGT00510000048165 ENSGT00940000153118.db.a.a.b.a.b ENSGT00940000153118.db.a.a.b.a.a ENSGT01100000263575.B.u ENSGT01100000263559.B #32 ENSGT00940000156302 ENSGT01100000263559.A.f.e #25 ENSGT01100000263506.a.e.b #14 ENSGT01050000244808.A.b.b.a ENSGT00950000183190.a.b.a.b ENSGT00420000029746.f ENSGT00950000183112.b.b ENSGT00940000158522 ENSGT01060000248645 ENSGT00390000012355.B.b ENSGT00390000005869.a ENSGT00730000111185 ENSGT00390000014273.b ENSGT00940000158423 ENSGT00530000063074.a ENSGT01030000234539.a.a.b.a.a ENSGT00390000013847 Pika MODERN SPECIES 4549 PLEKHO1 (ENSOPRG00000010923) VPS45 (ENSOPRG00000010903) OTUD7B (ENSOPRG00000010849) MTMR11 (ENSOPRG00000010825) SF3B4 (ENSOPRG00000010808) SV2A (ENSOPRG00000010799) BOLA1 (ENSOPRG00000010793) H2AC21 (ENSOPRG00000010790) H2AC20 (ENSOPRG00000010787) H2BC21 (ENSOPRG00000010785) H3C15 (ENSOPRG00000010778) #32 ENSOPRG00000010773 ENSOPRG00000010770 ENSOPRG00000010762 #25 Rabbit DUPLICATION Rabbit MODERN SPECIES 4 CA14 (ENSOCUG00000009032) ENSOCUG00000022805 PLEKHO1 (ENSOCUG00000006316) ENSOCUG00000014360 OTUD7B (ENSOCUG00000013924) MTMR11 (ENSOCUG00000004616) SF3B4 (ENSOCUG00000004614) SV2A (ENSOCUG00000003894) BOLA1 (ENSOCUG00000004609) ENSOCUG00000037254 H2BC21 (ENSOCUG00000023535) ENSOCUG00000023564 ENSOCUG00000025918 ENSOCUG00000027315 #25 ENSOCUG00000031190 #28 ENSOCUG00000023811 #25 H2BC18 (ENSOCUG00000024543) #14 ENSOCUG00000003403 ENSOCUG00000038567 ENSOCUG00000022427 ENSOCUG00000021718 ENSOCUG00000023196 HJV (ENSOCUG00000006209) ENSOCUG00000007257 TXNIP (ENSOCUG00000003010) POLR3GL (ENSOCUG00000006212) ANKRD34A (ENSOCUG00000029638) LIX1L (ENSOCUG00000003018) RBM8A (ENSOCUG00000025693) PEX11B (ENSOCUG00000003029) ITGA10 (ENSOCUG00000003032) Rabbit MODERN SPECIES 4 C1orf54 (ENSOCUG00000027251) APH1A (ENSOCUG00000009037) CA14 (ENSOCUG00000009032) ENSOCUG00000022805 PLEKHO1 (ENSOCUG00000006316) ENSOCUG00000014360 OTUD7B (ENSOCUG00000013924) MTMR11 (ENSOCUG00000004616) SF3B4 (ENSOCUG00000004614) SV2A (ENSOCUG00000003894) BOLA1 (ENSOCUG00000004609) ENSOCUG00000037254 H2BC21 (ENSOCUG00000023535) ENSOCUG00000023564 ENSOCUG00000025918 ENSOCUG00000027315 #25 ENSOCUG00000031190 #28 ENSOCUG00000023811 #25 H2BC18 (ENSOCUG00000024543) #14 ENSOCUG00000003403 ENSOCUG00000038567 ENSOCUG00000022427 ENSOCUG00000021718 ENSOCUG00000023196 HJV (ENSOCUG00000006209) ENSOCUG00000007257 TXNIP (ENSOCUG00000003010) POLR3GL (ENSOCUG00000006212) ANKRD34A (ENSOCUG00000029638) LIX1L (ENSOCUG00000003018) RBM8A (ENSOCUG00000025693) Rodentia ANCESTRAL SPECIES 6 ENSGT01100000263506.a.e.a.a.a.b.a.a.b.a.b.b #14 ENSGT00940000162956 ENSGT01030000234553.b.b.c.b.a ENSGT01030000234553.b.b.c.b.b.c ENSGT00390000002062 ENSGT00950000182802.B.a.a.b ENSGT00940000161530 ENSGT00940000158017 ENSGT00940000162723 ENSGT01100000263517.b.d.m.a.a.b ENSGT00940000163082 ENSGT01100000263559.B #32 ENSGT00940000156302 ENSGT01100000263575.A ENSGT00940000153092.a.a.c.a.a ENSGT01100000263559.A.f.e #25 ENSGT00940000153118.db.b ENSGT01060000248528.b.jh.a.a.a ENSGT01060000248528.b.kh.xb.b.a ENSGT01100000263474.a.b.b.e.a.a.a.a ##36 ENSGT00940000155501.a.a ENSGT00940000153092.a.b.f ENSGT01100000263506.a.e.a.a.a.b.a.a.b.a.b.a.a.a #14 ENSGT01060000248528.b.kh.yb.a.a ENSGT01100000263506.a.f.b #14 ENSGT01060000248528.b.kh.xb.b.b ENSGT01100000263506.a.e.a.a.b.a #14 ENSGT01100000263474.a.b.a.d #36 ENSGT01060000248528.b.jh.b ENSGT00940000155501.a.b ENSGT01100000263514.A.f Rodentia_B ANCESTRAL SPECIES ENSGT00550000075028 ENSGT00940000159172 ENSGT00940000160276 ENSGT00870000136537 ENSGT00950000182940.b.a.b ENSGT00510000048165 ENSGT00940000153118.db.a.a.b.a.b ENSGT00940000153118.db.a.a.b.a.a ENSGT01100000263575.B.u ENSGT01100000263506.a.e.a.a.a.a.a.r.b #14 ENSGT01100000263506.a.e.a.a.a.b.b.b #14 ENSGT01060000248528.b.kh.xb.a.b ENSGT01100000263559.A.f.d.a.a #25 ENSGT00940000156302 ENSGT01060000248528.b.kh.yb.a.b ENSGT01100000263559.A.f.e #25 ENSGT01100000263506.a.e.b #14 ENSGT01050000244808.A.b.b.a ENSGT00950000183112.b.b ENSGT00940000158522 ENSGT01060000248645 ENSGT00390000012355.B.b ENSGT00390000005869.a ENSGT00730000111185 ENSGT00910000145379.c ENSGT00390000014273.b ENSGT00940000158423 ENSGT00530000063074.a ENSGT01030000234539.a.a.b.a.a ENSGT00390000013847 ENSGT00390000002799 Kangaroo rat DUPLICATION Kangaroo rat MODERN SPECIES 457 Trim27 (ENSDORG00000005051) ENSDORG00000025556 ENSDORG00000013621 Gpx6 (ENSDORG00000013619) ENSDORG00000014252 ENSDORG00000014251 Nkapl (ENSDORG00000025596) ENSDORG00000014249 ENSDORG00000025537 Zkscan8 (ENSDORG00000026493) ENSDORG00000026539 Or2b6 (ENSDORG00000008778) ENSDORG00000001796 ENSDORG00000024522 #14 ENSDORG00000025297 ENSDORG00000026221 #25 ENSDORG00000030106 ENSDORG00000023845 #14 ENSDORG00000025697 ENSDORG00000024419 ENSDORG00000029289 ENSDORG00000024249 #14 ENSDORG00000000770 Pom121l2 (ENSDORG00000028474) Prss16 (ENSDORG00000010257) ENSDORG00000025002 ENSDORG00000028397 #14 ENSDORG00000024794 ENSDORG00000026404 ENSDORG00000025972 #14 ENSDORG00000024279 Kangaroo rat MODERN SPECIES 345 Tlr5 (ENSDORG00000027996) Susd4 (ENSDORG00000012702) ENSDORG00000012704 Capn8 (ENSDORG00000012143) Capn2 (ENSDORG00000013919) Trp53bp2 (ENSDORG00000013922) ENSDORG00000024350 ENSDORG00000024805 ENSDORG00000004350 Fcgr1 (ENSDORG00000016350) H2bc18 (ENSDORG00000028945) #14 ENSDORG00000029688 ENSDORG00000028205 ENSDORG00000025650 #36 ENSDORG00000028881 ENSDORG00000028335 #25 H2ac20 (ENSDORG00000024205) H2ac21 (ENSDORG00000024245) Bola1 (ENSDORG00000016364) Sv2a (ENSDORG00000016365) Sf3b4 (ENSDORG00000016366) Mtmr11 (ENSDORG00000016368) Otud7b (ENSDORG00000005008) Vps45 (ENSDORG00000005012) Plekho1 (ENSDORG00000005015) ENSDORG00000011690 Aph1a (ENSDORG00000011694) BC028528 (ENSDORG00000011695) ENSDORG00000025269 Mrps21 (ENSDORG00000030111) Prpf3 (ENSDORG00000008664) Kangaroo rat MODERN SPECIES 152 ENSDORG00000025050 ENSDORG00000028291 #25 Kangaroo rat MODERN SPECIES 523 BC005537 (ENSDORG00000024875) Gmnn (ENSDORG00000014569) Ripor2 (ENSDORG00000014570) Cmah (ENSDORG00000007165) Carmil1 (ENSDORG00000013666) Scgn (ENSDORG00000013668) H2bc1 (ENSDORG00000024877) ##36 Slc17a4 (ENSDORG00000011816) Slc17a1 (ENSDORG00000014554) Slc17a2 (ENSDORG00000014558) H1f1 (ENSDORG00000005238) ENSDORG00000025727 ENSDORG00000028336 #32 ENSDORG00000027742 ENSDORG00000027130 ENSDORG00000025836 #25 ENSDORG00000005251 ENSDORG00000025947 #14 ENSDORG00000027998 H1f4 (ENSDORG00000005256) ENSDORG00000024928 #14 ENSDORG00000024715 #14 ENSDORG00000025258 ENSDORG00000025950 ENSDORG00000023996 #14 ENSDORG00000030035 Btn2a2 (ENSDORG00000000451) Btn1a1 (ENSDORG00000000452) ENSDORG00000029042 Abt1 (ENSDORG00000000454) Myomorpha ANCESTRAL SPECIES 12 ENSGT00550000075028 ENSGT00940000159172 ENSGT00940000160276 ENSGT00870000136537 ENSGT00950000182940.b.a.b ENSGT00510000048165 ENSGT00940000153118.db.a.a.b.a.b ENSGT00940000153118.db.a.a.b.a.a ENSGT01100000263575.B.u ENSGT01100000263506.a.e.a.a.a.a.a.r.b #14 ENSGT01100000263506.a.e.a.a.a.b.b.b #14 ENSGT01060000248528.b.kh.xb.a.b ENSGT01100000263559.A.f.d.a.a #25 ENSGT00940000156302 ENSGT01060000248528.b.kh.yb.a.b ENSGT01100000263559.A.f.e #25 ENSGT01100000263506.a.e.b #14 ENSGT01050000244808.A.b.b.a ENSGT00950000183112.b.b ENSGT00940000158522 ENSGT01060000248645 ENSGT00390000012355.B.b ENSGT00390000005869.a ENSGT00730000111185 ENSGT00390000014273.b ENSGT00940000158423 ENSGT00530000063074.a ENSGT01030000234539.a.a.b.a.a ENSGT00390000013847 ENSGT00390000002799 ENSGT00940000157203 Muroidea ANCESTRAL SPECIES 15 ENSGT00940000160894 ENSGT00940000162346 ENSGT00940000162523 ENSGT00940000161926 ENSGT00940000160468 ENSGT00940000163269 ENSGT01100000263514.A.e.a.b.a.b.a.a.a.b.a.b ENSGT01100000263514.A.e.a.b.a.b.a.a.a.a ENSGT01060000248528.b.jh.b ENSGT01060000248528.b.kh.yb.a.a ENSGT01100000263506.a.f.b #14 ENSGT01060000248528.b.jh.a.a.a ENSGT01060000248528.b.kh.xb.b.a ENSGT01100000263474.a.b.b.e.a.a.a.a ##36 ENSGT00940000153092.a.a.c.a.a.f.b ENSGT01100000263559.A.f.e #25 ENSGT00940000160426 ENSGT01100000263559.B #32 ENSGT00940000163082 ENSGT01100000263517.b.d.m.a.a.b ENSGT01060000248528.b.kh.yb.b ENSGT01100000263506.a.e.a.a.a.b.a.a.b.a.b.a.a.a.p #14 ENSGT00940000153092.a.b.f ENSGT00940000155501.a.a ENSGT01100000263506.a.e.a.a.a.b.a.a.b.a.b.a.a.a.o.b #14 ENSGT00940000158017 ENSGT00940000161530 ENSGT00390000002062 ENSGT00940000160281 ENSGT00940000153253.b.a.h ENSGT00940000164849 Upper Galilee mountains blind mole rat DUPLICATION Upper Galilee mountains blind mole rat DUPLICATION Upper Galilee mountains blind mole rat DUPLICATION Upper Galilee mountains blind mole rat MODERN SPECIES 1243 Fcgr1 (ENSNGAG00000016194) ENSNGAG00000012113 #32 ENSNGAG00000020540 #25 ENSNGAG00000004233 #25 ENSNGAG00000012728 ENSNGAG00000011353 #14 ENSNGAG00000023599 H2ac20 (ENSNGAG00000011075) H2ac21 (ENSNGAG00000011111) Bola1 (ENSNGAG00000024327) Sv2a (ENSNGAG00000024242) Sf3b4 (ENSNGAG00000016337) Mtmr11 (ENSNGAG00000015085) Otud7b (ENSNGAG00000019612) Vps45 (ENSNGAG00000001159) ENSNGAG00000005098 Plekho1 (ENSNGAG00000002001) Anp32e (ENSNGAG00000010494) Upper Galilee mountains blind mole rat MODERN SPECIES 1243 ENSNGAG00000023116 Anp32e (ENSNGAG00000010494) Plekho1 (ENSNGAG00000002001) ENSNGAG00000005098 Vps45 (ENSNGAG00000001159) Otud7b (ENSNGAG00000019612) Mtmr11 (ENSNGAG00000015085) Sf3b4 (ENSNGAG00000016337) Sv2a (ENSNGAG00000024242) Bola1 (ENSNGAG00000024327) H2ac21 (ENSNGAG00000011111) H2ac20 (ENSNGAG00000011075) ENSNGAG00000023599 ENSNGAG00000011353 #14 ENSNGAG00000012728 ENSNGAG00000004233 #25 ENSNGAG00000020540 #25 ENSNGAG00000012113 #32 Fcgr1 (ENSNGAG00000016194) Upper Galilee mountains blind mole rat MODERN SPECIES 769 ENSNGAG00000017772 ENSNGAG00000019499 Zfp322a (ENSNGAG00000018458) Abt1 (ENSNGAG00000011004) Btn1a1 (ENSNGAG00000016601) Btn2a2 (ENSNGAG00000005096) ENSNGAG00000017676 ENSNGAG00000018460 #14 ENSNGAG00000018828 ENSNGAG00000017262 #25 ENSNGAG00000006078 #32 ENSNGAG00000020628 #32 ENSNGAG00000012803 ENSNGAG00000009633 ENSNGAG00000008922 ##36 ENSNGAG00000018017 ENSNGAG00000017761 #25 ENSNGAG00000017588 H1f4 (ENSNGAG00000001403) ENSNGAG00000019522 ENSNGAG00000017064 #14 H1f6 (ENSNGAG00000010517) ENSNGAG00000010665 Hfe (ENSNGAG00000016849) H1f2 (ENSNGAG00000004187) Upper Galilee mountains blind mole rat MODERN SPECIES 516 Vmn1r196 (ENSNGAG00000000421) ENSNGAG00000003182 ##36 ENSNGAG00000003390 ENSNGAG00000018350 ENSNGAG00000001327 #14 ENSNGAG00000018408 Prss16 (ENSNGAG00000017902) ENSNGAG00000016925 ENSNGAG00000018047 ENSNGAG00000001601 ##36 H2ac24 (ENSNGAG00000003629) ENSNGAG00000003563 ENSNGAG00000002211 ##36 ENSNGAG00000020779 #25 ENSNGAG00000002100 ENSNGAG00000002502 ENSNGAG00000003052 ENSNGAG00000004217 ENSNGAG00000006564 #32 ENSNGAG00000004855 ENSNGAG00000005469 #14 ENSNGAG00000005140 ENSNGAG00000001558 Upper Galilee mountains blind mole rat MODERN SPECIES 769 ENSNGAG00000019499 Zfp322a (ENSNGAG00000018458) Abt1 (ENSNGAG00000011004) Btn1a1 (ENSNGAG00000016601) Btn2a2 (ENSNGAG00000005096) ENSNGAG00000017676 ENSNGAG00000018460 #14 ENSNGAG00000018828 ENSNGAG00000017262 #25 ENSNGAG00000006078 #32 ENSNGAG00000020628 #32 ENSNGAG00000012803 ENSNGAG00000009633 ENSNGAG00000008922 ##36 ENSNGAG00000018017 ENSNGAG00000017761 #25 ENSNGAG00000017588 H1f4 (ENSNGAG00000001403) ENSNGAG00000019522 ENSNGAG00000017064 #14 H1f6 (ENSNGAG00000010517) ENSNGAG00000010665 Hfe (ENSNGAG00000016849) H1f2 (ENSNGAG00000004187) ENSNGAG00000007331 ENSNGAG00000010646 #32 ENSNGAG00000009026 ENSNGAG00000010543 ENSNGAG00000011159 #32 H1f1 (ENSNGAG00000007966) Slc17a2 (ENSNGAG00000022747) Muroidea_A ANCESTRAL SPECIES 5 ENSGT00390000002049.c.a ENSGT00940000156893 ENSGT00950000182907.a.a.u ENSGT00530000063760.b ENSGT00550000075028 ENSGT00940000159172 ENSGT00940000160276 ENSGT00870000136537 ENSGT00950000182940.b.a.b ENSGT00510000048165 ENSGT00940000153118.db.a.a.b.a.b ENSGT00940000153118.db.a.a.b.a.a ENSGT01100000263506.a.e.a.a.a.b.b.b #14 ENSGT01060000248528.b.kh.xb.a.b ENSGT00940000153092.a.a.c.a.a.f.b ENSGT01100000263559.A.f.e #25 ENSGT01100000263506.a.e.b #14 ENSGT01050000244808.A.b.b.a ENSGT00950000183112.b.b ENSGT00940000158522 ENSGT00940000165934 ENSGT00390000012355.B.b ENSGT00390000005869.a ENSGT00730000111185 ENSGT00390000014273.b ENSGT00940000158423 ENSGT00530000063074.a ENSGT01030000234539.a.a.b.a.a ENSGT00390000013847 ENSGT00390000002799 ENSGT00940000157203 Murinae ANCESTRAL SPECIES 5 ENSGT00950000182907.a.a.u ENSGT00530000063760.b ENSGT00550000075028 ENSGT00940000159172 ENSGT00940000160276 ENSGT00870000136537 ENSGT00950000182940.b.a.b ENSGT00510000048165 ENSGT00940000153118.db.a.a.b.a.b ENSGT00940000153118.db.a.a.b.a.a ENSGT01100000263506.a.e.a.a.a.b.b.b #14 ENSGT01060000248528.b.kh.xb.a.b ENSGT01100000263559.A.f.d.a.a #25 ENSGT00940000156302 ENSGT01060000248528.b.kh.yb.a.b ENSGT01100000263559.A.f.e #25 ENSGT01100000263559.B #32 ENSGT01100000263506.a.e.b #14 ENSGT01050000244808.A.b.b.a ENSGT00950000183112.b.b ENSGT00940000158522 ENSGT00940000165934 ENSGT00390000012355.B.b ENSGT00390000005869.a ENSGT00730000111185 ENSGT00390000014273.b ENSGT00940000158423 ENSGT00530000063074.a ENSGT01030000234539.a.a.b.a.a ENSGT00390000013847 ENSGT00390000002799 Mus ANCESTRAL SPECIES 7 ENSGT00950000182907.a.a.u ENSGT00530000063760.b ENSGT00550000075028 ENSGT00940000159172 ENSGT00940000160276 ENSGT00870000136537 ENSGT00950000182940.b.a.b ENSGT00510000048165 ENSGT00940000153118.db.a.a.b.a.b ENSGT00940000153118.db.a.a.b.a.a ENSGT01100000263506.a.e.a.a.a.b.b.b #14 ENSGT01060000248528.b.kh.xb.a.b ENSGT01100000263559.A.f.d.a.a #25 ENSGT00940000156302 ENSGT01060000248528.b.kh.yb.a.b ENSGT01100000263559.A.f.e #25 ENSGT01100000263559.B #32 ENSGT01100000263506.a.e.b #14 ENSGT01050000244808.A.b.b.a ENSGT00950000183112.b.b ENSGT00940000158522 ENSGT00860000135842 ENSGT00940000165934 ENSGT00390000012355.B.b ENSGT00390000005869.a ENSGT00730000111185 ENSGT00390000014273.b ENSGT00940000158423.c ENSGT00530000063074.a ENSGT01030000234539.a.a.b.a.a ENSGT00390000013847 Shrew mouse MODERN SPECIES 17 Car14 (MGP_PahariEiJ_G0026803) MGP_PahariEiJ_G0026804 Plekho1 (MGP_PahariEiJ_G0026805) Vps45 (MGP_PahariEiJ_G0026806) Otud7b (MGP_PahariEiJ_G0026807) Mtmr11 (MGP_PahariEiJ_G0026808) Sf3b4 (MGP_PahariEiJ_G0026809) Sv2a (MGP_PahariEiJ_G0026810) Bola1 (MGP_PahariEiJ_G0026811) H2ac21 (MGP_PahariEiJ_G0026812) H2ac20 (MGP_PahariEiJ_G0026813) MGP_PahariEiJ_G0026815 MGP_PahariEiJ_G0026814 H2bc21 (MGP_PahariEiJ_G0026816) #14 MGP_PahariEiJ_G0026817 MGP_PahariEiJ_G0026818 #25 MGP_PahariEiJ_G0026819 #32 H2bc18 (MGP_PahariEiJ_G0026820) #14 Fcgr1 (MGP_PahariEiJ_G0026821) Hjv (MGP_PahariEiJ_G0026822) Txnip (MGP_PahariEiJ_G0026823) MGP_PahariEiJ_G0026824 Polr3gl (MGP_PahariEiJ_G0026825) Ankrd34a (MGP_PahariEiJ_G0026826) Lix1l (MGP_PahariEiJ_G0026827) MGP_PahariEiJ_G0026828 Pex11b (MGP_PahariEiJ_G0026829) MGP_PahariEiJ_G0026830 Itga10 (MGP_PahariEiJ_G0026831) Ankrd35 (MGP_PahariEiJ_G0026832) Pias3 (MGP_PahariEiJ_G0026833) Mus_A ANCESTRAL SPECIES 9 ENSGT00950000182907.a.a.u ENSGT00530000063760.b ENSGT00550000075028 ENSGT00940000159172 ENSGT00940000160276 ENSGT00870000136537 ENSGT00950000182940.b.a.b ENSGT00510000048165 ENSGT00940000153118.db.a.a.b.a.b ENSGT00940000153118.db.a.a.b.a.a ENSGT00940000153092.a.a.d.f.a ENSGT01100000263506.a.e.a.a.a.b.b.b #14 ENSGT01100000263559.A.f.d.a.a #25 ENSGT00940000156302 ENSGT01060000248528.b.kh.yb.a.b ENSGT01100000263559.A.f.e #25 ENSGT01100000263506.a.e.b #14 ENSGT01050000244808.A.b.b.a ENSGT00950000183112.b.b ENSGT00940000158522 ENSGT00860000135842 ENSGT00940000165934 ENSGT00390000012355.B.b ENSGT00390000005869.a ENSGT00730000111185.n.a ENSGT00390000014273.b ENSGT00940000158423.c ENSGT00530000063074.a ENSGT01030000234539.a.a.b.a.a ENSGT00390000013847 ENSGT00390000002799 Ryukyu mouse MODERN SPECIES 12 Car14 (MGP_CAROLIEiJ_G0025359) Anp32e (MGP_CAROLIEiJ_G0025360) Plekho1 (MGP_CAROLIEiJ_G0025361) Vps45 (MGP_CAROLIEiJ_G0025362) Otud7b (MGP_CAROLIEiJ_G0025363) Mtmr11 (MGP_CAROLIEiJ_G0025364) Sf3b4 (MGP_CAROLIEiJ_G0025365) Sv2a (MGP_CAROLIEiJ_G0025366) Bola1 (MGP_CAROLIEiJ_G0025367) H2ac21 (MGP_CAROLIEiJ_G0025368) H2ac20 (MGP_CAROLIEiJ_G0025369) MGP_CAROLIEiJ_G0025370 H2bc21 (MGP_CAROLIEiJ_G0025371) #14 MGP_CAROLIEiJ_G0025372 MGP_CAROLIEiJ_G0025373 MGP_CAROLIEiJ_G0025374 #25 H2bc18 (MGP_CAROLIEiJ_G0025375) #14 Fcgr1 (MGP_CAROLIEiJ_G0025376) Hjv (MGP_CAROLIEiJ_G0025377) Txnip (MGP_CAROLIEiJ_G0025378) MGP_CAROLIEiJ_G0025379 Polr3gl (MGP_CAROLIEiJ_G0025380) Ankrd34a (MGP_CAROLIEiJ_G0025381) Lix1l (MGP_CAROLIEiJ_G0025382) Rbm8a (MGP_CAROLIEiJ_G0025383) Pex11b (MGP_CAROLIEiJ_G0025384) MGP_CAROLIEiJ_G0025385 Itga10 (MGP_CAROLIEiJ_G0025386) MGP_CAROLIEiJ_G0025387 Pias3 (MGP_CAROLIEiJ_G0025388) Nudt17 (MGP_CAROLIEiJ_G0025389) Mus_B ANCESTRAL SPECIES 13 ENSGT00940000161926 ENSGT00940000160468 ENSGT00940000163269 ENSGT01100000263514.A.e.a.b.a.a.c.b ENSGT01100000263506.a.f.b.p.a #14 ENSGT01100000263559.A.f.d.b #25 ENSGT00940000163082 ENSGT01100000263517.b.d.m.a.a.b ENSGT01100000263559.A.f.d.a.b #25 ENSGT01060000248528.b.jh.a.b ENSGT00940000163525 ENSGT01100000263506.a.e.a.a.a.b.a.a.b.a.b.a.a.b #14 ENSGT00940000155501.a.a ENSGT01100000263506.a.e.a.a.a.b.a.a.b.a.b.a.a.a.p #14 ENSGT00940000156302 ENSGT01100000263559.A.f.e #25 ENSGT00940000155501.a.b ENSGT00940000158017 ENSGT00940000161530 ENSGT00390000002062 ENSGT00940000162956 ENSGT01030000234553.b.b.c.b.b.c.b.a.a ENSGT01030000234553.b.b.c.b.a.a.b.a.a.a.a.b.a.a.b.b ENSGT01030000234553.b.b.c.b.a.a.b.a.a.a.a.a.b.b.a ENSGT01030000234553.b.b.c.b.b.c.b.a.b.b ENSGT01030000234553.b.b.c.b.b.c.a.a.b.a.b ENSGT01030000234553.b.b.c.b.b.c.b.b.b ENSGT01030000234553.b.b.c.b.a.a.b.a.a.b.b.a ENSGT01030000234553.b.b.c.b.a.a.b.a.a.b.a.b ENSGT01030000234553.b.b.c.b.a.a.b.a.a.b.a.a ENSGT01030000234553.b.b.c.b.a.b.d Mouse MODERN SPECIES 12 Pex11b (ENSMUSG00000028102) Rbm8a (ENSMUSG00000038374) Lix1l (ENSMUSG00000049288) Ankrd34a (ENSMUSG00000049097) Polr3gl (ENSMUSG00000028104) Gm16253 (ENSMUSG00000087610) Txnip (ENSMUSG00000038393) Hjv (ENSMUSG00000038403) Fcgr1 (ENSMUSG00000015947) H2bc18 (ENSMUSG00000105827) #14 H3c13 (ENSMUSG00000074403) #25 H4c14 (ENSMUSG00000091405) H3c14 (ENSMUSG00000093769) #25 H2ac18 (ENSMUSG00000064220) H2ac19 (ENSMUSG00000063954) H3c15 (ENSMUSG00000081058) #25 H2bc21 (ENSMUSG00000068854) #14 H2ac20 (ENSMUSG00000068855) H2ac21 (ENSMUSG00000063689) Bola1 (ENSMUSG00000015943) Sv2a (ENSMUSG00000038486) Sf3b4 (ENSMUSG00000068856) Mtmr11 (ENSMUSG00000045934) Otud7b (ENSMUSG00000038495) Vps45 (ENSMUSG00000015747) Plekho1 (ENSMUSG00000015745) Anp32e (ENSMUSG00000015749) Car14 (ENSMUSG00000038526) Aph1a (ENSMUSG00000015750) BC028528 (ENSMUSG00000038543) Ciart (ENSMUSG00000038550) Mus_C ANCESTRAL SPECIES 10 ENSGT00940000160894 ENSGT00940000162346 ENSGT00940000162523 ENSGT00940000161926 ENSGT00940000160468 ENSGT00940000163269 ENSGT01100000263514.A.e.a.b.a.a.c.b ENSGT01100000263514.A.f ENSGT01060000248528.b.kh.yb.b ENSGT00940000156302 ENSGT00940000153092.a.a.d.e.a ENSGT01100000263559.B #32 ENSGT01100000263514.A.e.a.b.a.b.a.a.a.b.a.a.a.a ENSGT01100000263474.a.b.b.e.a.a.a.a ##36 ENSGT00940000153092.a.a.c.a.a.f.b ENSGT01100000263559.A.f.e #25 ENSGT00940000163082 ENSGT01100000263517.b.d.m.a.a.b ENSGT00940000163525 ENSGT01100000263506.a.e.a.a.a.b.a.a.b.a.b.a.a.b #14 ENSGT01100000263506.a.e.a.a.a.b.b.a.a.a #14 ENSGT01100000263506.a.f.b.p.b #14 ENSGT00940000153092.a.a.c.a.a.g ENSGT01100000263514.A.e.a.b.a.b.a.a.a.a ENSGT00940000155501.a.a ENSGT00940000155501.a.b ENSGT00940000158017 ENSGT00940000161530 ENSGT00390000002062 ENSGT00940000162956 ENSGT01030000234553.b.b.c.b.b.c.b.a.a spretus DUPLICATION spretus MODERN SPECIES 4 MGP_SPRETEiJ_G0019204 MGP_SPRETEiJ_G0019203 MGP_SPRETEiJ_G0019202 MGP_SPRETEiJ_G0019201 #14 MGP_SPRETEiJ_G0019200 #25 H1f2 (MGP_SPRETEiJ_G0019199) Hfe (MGP_SPRETEiJ_G0019198) MGP_SPRETEiJ_G0019197 ##28 H1f6 (MGP_SPRETEiJ_G0019196) MGP_SPRETEiJ_G0019194 MGP_SPRETEiJ_G0019193 #25 MGP_SPRETEiJ_G0019192 MGP_SPRETEiJ_G0019191 ##36 MGP_SPRETEiJ_G0019190 ##36 MGP_SPRETEiJ_G0019189 #32 MGP_SPRETEiJ_G0019188 #25 MGP_SPRETEiJ_G0019187 MGP_SPRETEiJ_G0019186 ##36 MGP_SPRETEiJ_G0019185 MGP_SPRETEiJ_G0019184 ##28 Btn2a2 (MGP_SPRETEiJ_G0019183) Btn1a1 (MGP_SPRETEiJ_G0019182) Abt1 (MGP_SPRETEiJ_G0019181) Zfp322a (MGP_SPRETEiJ_G0019180) MGP_SPRETEiJ_G0019179 Vmn1r217 (MGP_SPRETEiJ_G0019178) MGP_SPRETEiJ_G0019177 Vmn1r215 (MGP_SPRETEiJ_G0019176) Vmn1r214 (MGP_SPRETEiJ_G0019175) MGP_SPRETEiJ_G0019174 MGP_SPRETEiJ_G0019173 spretus DUPLICATION spretus MODERN SPECIES 4 Cmah (MGP_SPRETEiJ_G0019215) MGP_SPRETEiJ_G0019214 Carmil1 (MGP_SPRETEiJ_G0019213) Scgn (MGP_SPRETEiJ_G0019212) Slc17a4 (MGP_SPRETEiJ_G0019211) Slc17a1 (MGP_SPRETEiJ_G0019210) Slc17a3 (MGP_SPRETEiJ_G0019209) Slc17a2 (MGP_SPRETEiJ_G0019208) Trim38 (MGP_SPRETEiJ_G0019207) H1f1 (MGP_SPRETEiJ_G0019206) MGP_SPRETEiJ_G0019205 MGP_SPRETEiJ_G0019204 MGP_SPRETEiJ_G0019203 MGP_SPRETEiJ_G0019202 MGP_SPRETEiJ_G0019201 #14 MGP_SPRETEiJ_G0019200 #25 H1f2 (MGP_SPRETEiJ_G0019199) Hfe (MGP_SPRETEiJ_G0019198) MGP_SPRETEiJ_G0019197 ##28 H1f6 (MGP_SPRETEiJ_G0019196) MGP_SPRETEiJ_G0019194 MGP_SPRETEiJ_G0019193 #25 MGP_SPRETEiJ_G0019192 MGP_SPRETEiJ_G0019191 ##36 MGP_SPRETEiJ_G0019190 ##36 MGP_SPRETEiJ_G0019189 #32 MGP_SPRETEiJ_G0019188 #25 MGP_SPRETEiJ_G0019187 MGP_SPRETEiJ_G0019186 ##36 MGP_SPRETEiJ_G0019185 MGP_SPRETEiJ_G0019184 ##28 spretus MODERN SPECIES 4 Vmn1r217 (MGP_SPRETEiJ_G0019178) MGP_SPRETEiJ_G0019179 Zfp322a (MGP_SPRETEiJ_G0019180) Abt1 (MGP_SPRETEiJ_G0019181) Btn1a1 (MGP_SPRETEiJ_G0019182) Btn2a2 (MGP_SPRETEiJ_G0019183) MGP_SPRETEiJ_G0019184 ##28 MGP_SPRETEiJ_G0019185 MGP_SPRETEiJ_G0019186 ##36 MGP_SPRETEiJ_G0019187 MGP_SPRETEiJ_G0019188 #25 MGP_SPRETEiJ_G0019189 #32 MGP_SPRETEiJ_G0019190 ##36 MGP_SPRETEiJ_G0019191 ##36 MGP_SPRETEiJ_G0019192 MGP_SPRETEiJ_G0019193 #25 MGP_SPRETEiJ_G0019194 H1f6 (MGP_SPRETEiJ_G0019196) MGP_SPRETEiJ_G0019197 ##28 Hfe (MGP_SPRETEiJ_G0019198) H1f2 (MGP_SPRETEiJ_G0019199) MGP_SPRETEiJ_G0019200 #25 MGP_SPRETEiJ_G0019201 #14 MGP_SPRETEiJ_G0019202 MGP_SPRETEiJ_G0019203 MGP_SPRETEiJ_G0019204 MGP_SPRETEiJ_G0019205 H1f1 (MGP_SPRETEiJ_G0019206) Trim38 (MGP_SPRETEiJ_G0019207) Slc17a2 (MGP_SPRETEiJ_G0019208) Slc17a3 (MGP_SPRETEiJ_G0019209) Rat DUPLICATION Rat MODERN SPECIES 8 Ripor2 (ENSRNOG00000018804) Cmahp (ENSRNOG00000003094) ENSRNOG00000067245 ENSRNOG00000064118 Carmil1 (ENSRNOG00000016576) Scgn (ENSRNOG00000016628) H2ac1 (ENSRNOG00000065352) H2bc1 (ENSRNOG00000069905) ##36 Slc17a4 (ENSRNOG00000022505) AABR07027750.1 (ENSRNOG00000042692) Slc17a3 (ENSRNOG00000032745) Slc17a2 (ENSRNOG00000017180) H1f1 (ENSRNOG00000017175) Hist1h3b (ENSRNOG00000068614) Hist1h4m (ENSRNOG00000065263) LOC102549173 (ENSRNOG00000066835) #25 H3c13 (ENSRNOG00000065054) #25 Hist1h2af (ENSRNOG00000022146) H1f2 (ENSRNOG00000067441) Hfe (ENSRNOG00000016967) Hist1h4m (ENSRNOG00000070706) H1f6 (ENSRNOG00000061863) Hist1h2bq (ENSRNOG00000069578) #14 AC130391.3 (ENSRNOG00000053025) H1f4 (ENSRNOG00000047459) Hist1h4m (ENSRNOG00000070513) H4f3 (ENSRNOG00000048264) hist1h2ail2 (ENSRNOG00000067434) LOC102548682 (ENSRNOG00000064521) #32 LOC100910200 (ENSRNOG00000064011) #14 Hist1h3b (ENSRNOG00000068516) Rat MODERN SPECIES 11 Lix1l (ENSRNOG00000021213) Ankrd34a (ENSRNOG00000033741) ENSRNOG00000069895 Polr3gl (ENSRNOG00000021209) Txnip (ENSRNOG00000021201) AABR07012592.1 (ENSRNOG00000037223) Hjv (ENSRNOG00000021200) AABR07012588.1 (ENSRNOG00000059842) AABR07012587.1 (ENSRNOG00000002223) ENSRNOG00000069676 Fcgr1a (ENSRNOG00000021199) H2bc18 (ENSRNOG00000070591) #14 Hist2h3c2 (ENSRNOG00000063016) #25 Hist1h4b (ENSRNOG00000032224) LOC102549173 (ENSRNOG00000065886) #32 LOC102549173 (ENSRNOG00000068046) #25 ENSRNOG00000062927 Bola1 (ENSRNOG00000021185) Sv2a (ENSRNOG00000021182) Sf3b4 (ENSRNOG00000021181) Mtmr11 (ENSRNOG00000021176) Otud7b (ENSRNOG00000042068) Vps45 (ENSRNOG00000021173) Plekho1 (ENSRNOG00000021170) RGD1562196 (ENSRNOG00000065202) Anp32e (ENSRNOG00000021168) Car14 (ENSRNOG00000023162) Aph1a (ENSRNOG00000023816) C2H1orf54 (ENSRNOG00000059750) Ciart (ENSRNOG00000042717) Mrps21 (ENSRNOG00000024845) Rat MODERN SPECIES 11 Aph1a (ENSRNOG00000023816) Car14 (ENSRNOG00000023162) Anp32e (ENSRNOG00000021168) RGD1562196 (ENSRNOG00000065202) Plekho1 (ENSRNOG00000021170) Vps45 (ENSRNOG00000021173) Otud7b (ENSRNOG00000042068) Mtmr11 (ENSRNOG00000021176) Sf3b4 (ENSRNOG00000021181) Sv2a (ENSRNOG00000021182) Bola1 (ENSRNOG00000021185) ENSRNOG00000062927 LOC102549173 (ENSRNOG00000068046) #25 LOC102549173 (ENSRNOG00000065886) #32 Hist1h4b (ENSRNOG00000032224) Hist2h3c2 (ENSRNOG00000063016) #25 H2bc18 (ENSRNOG00000070591) #14 Fcgr1a (ENSRNOG00000021199) ENSRNOG00000069676 AABR07012587.1 (ENSRNOG00000002223) AABR07012588.1 (ENSRNOG00000059842) Hjv (ENSRNOG00000021200) AABR07012592.1 (ENSRNOG00000037223) Txnip (ENSRNOG00000021201) Polr3gl (ENSRNOG00000021209) ENSRNOG00000069895 Ankrd34a (ENSRNOG00000033741) Lix1l (ENSRNOG00000021213) Rbm8a (ENSRNOG00000021215) Pex11b (ENSRNOG00000021216) Itga10 (ENSRNOG00000021217) Cricetidae ANCESTRAL SPECIES 48 ENSGT00940000156302 ENSGT01100000263559.A.f.e #25 ENSGT01100000263514.A.e.a.b.a.b.a.a.b ENSGT00940000162950 ENSGT01100000263506.a.e.a.a.a.b.a.a.b.a.b.a.a.a.o.a #14 ENSGT00940000153092.a.a.c.a.a.f.a Cricetidae_B ANCESTRAL SPECIES 22 ENSGT00530000068834 ENSGT00940000153717.a.a ENSGT00390000010830 ENSGT00940000155112.B ENSGT00950000183108.a ENSGT01100000263474.a.a.c.a ##36 ENSGT00940000160894 ENSGT00940000162346 ENSGT00940000162523 ENSGT00940000161926 ENSGT00940000160468 ENSGT00940000163269 ENSGT01100000263514.A.e.a.b.a.b.a.a.a.b.a.b ENSGT01100000263474.a.b.b.e.a.a.a.a ##36 ENSGT00940000153092.a.a.c.a.a.f.b ENSGT01100000263559.A.f.e #25 ENSGT00940000163082 ENSGT01100000263517.b.d.m.a.a.b ENSGT01060000248528.b.kh.yb.b ENSGT00940000163525 ENSGT01100000263506.a.e.a.a.a.b.a.a.b.a.b.b.b #14 ENSGT01060000248528.b.jh.b ENSGT01100000263474.a.b.b.e.a.a.a.b ##36 ENSGT00940000153092.a.a.c.a.a.g Northern American deer mouse DUPLICATION Northern American deer mouse MODERN SPECIES 19 Anp32e (ENSPEMG00000000742) Plekho1 (ENSPEMG00000015477) Vps45 (ENSPEMG00000018774) ENSPEMG00000030134 Otud7b (ENSPEMG00000027312) Mtmr11 (ENSPEMG00000014402) Sf3b4 (ENSPEMG00000017568) Sv2a (ENSPEMG00000008887) Bola1 (ENSPEMG00000008051) H2ac21 (ENSPEMG00000025720) H2ac20 (ENSPEMG00000008763) H2bc21 (ENSPEMG00000026085) #14 ENSPEMG00000026231 #32 ENSPEMG00000024811 ENSPEMG00000030515 ENSPEMG00000030275 #25 H2bc18 (ENSPEMG00000026346) #14 Fcgr1 (ENSPEMG00000010092) ENSPEMG00000029146 Hjv (ENSPEMG00000016694) Txnip (ENSPEMG00000010784) Polr3gl (ENSPEMG00000014489) Ankrd34a (ENSPEMG00000018493) Lix1l (ENSPEMG00000009747) ENSPEMG00000018117 Pex11b (ENSPEMG00000030984) Itga10 (ENSPEMG00000009215) Ankrd35 (ENSPEMG00000005629) Pias3 (ENSPEMG00000003331) Nudt17 (ENSPEMG00000018269) Polr3c (ENSPEMG00000016322) Northern American deer mouse MODERN SPECIES 18 ENSPEMG00000028679 ENSPEMG00000029970 #14 ENSPEMG00000031078 ENSPEMG00000028544 ENSPEMG00000028094 ##36 H1f4 (ENSPEMG00000030581) ENSPEMG00000030798 ENSPEMG00000031080 #14 H1f6 (ENSPEMG00000009339) ENSPEMG00000025646 Hfe (ENSPEMG00000010389) H1f2 (ENSPEMG00000008138) ENSPEMG00000029874 #25 ENSPEMG00000027714 ##36 ENSPEMG00000027552 ENSPEMG00000029640 #25 ENSPEMG00000025866 ENSPEMG00000027771 H3c1 (ENSPEMG00000027111) H1f1 (ENSPEMG00000024910) Trim38 (ENSPEMG00000016246) Slc17a2 (ENSPEMG00000012172) Slc17a3 (ENSPEMG00000004989) Slc17a1 (ENSPEMG00000006668) Slc17a4 (ENSPEMG00000006255) H2bc1 (ENSPEMG00000027369) ##36 H2ac1 (ENSPEMG00000031150) Carmil1 (ENSPEMG00000013402) Cmah (ENSPEMG00000016934) Ripor2 (ENSPEMG00000013612) Armh2 (ENSPEMG00000026805) Northern American deer mouse MODERN SPECIES 18 Carmil1 (ENSPEMG00000013402) H2ac1 (ENSPEMG00000031150) H2bc1 (ENSPEMG00000027369) ##36 Slc17a4 (ENSPEMG00000006255) Slc17a1 (ENSPEMG00000006668) Slc17a3 (ENSPEMG00000004989) Slc17a2 (ENSPEMG00000012172) Trim38 (ENSPEMG00000016246) H1f1 (ENSPEMG00000024910) H3c1 (ENSPEMG00000027111) ENSPEMG00000027771 ENSPEMG00000025866 ENSPEMG00000029640 #25 ENSPEMG00000027552 ENSPEMG00000027714 ##36 ENSPEMG00000029874 #25 H1f2 (ENSPEMG00000008138) Hfe (ENSPEMG00000010389) ENSPEMG00000025646 H1f6 (ENSPEMG00000009339) ENSPEMG00000031080 #14 ENSPEMG00000030798 H1f4 (ENSPEMG00000030581) ENSPEMG00000028094 ##36 ENSPEMG00000028544 ENSPEMG00000031078 ENSPEMG00000029970 #14 ENSPEMG00000028679 ENSPEMG00000027534 #32 H1f3 (ENSPEMG00000005204) ENSPEMG00000028580 Northern American deer mouse MODERN SPECIES 18 Vmn1r196 (ENSPEMG00000021962) ENSPEMG00000029198 #14 ENSPEMG00000026525 ENSPEMG00000024590 ENSPEMG00000027956 #14 ENSPEMG00000028756 Prss16 (ENSPEMG00000022140) Pom121l2 (ENSPEMG00000030051) Zfp184 (ENSPEMG00000023916) ENSPEMG00000028170 ##36 ENSPEMG00000027887 ENSPEMG00000030497 ENSPEMG00000029379 ENSPEMG00000031376 #14 ENSPEMG00000028578 ENSPEMG00000026061 #25 ENSPEMG00000028118 H1f5 (ENSPEMG00000004979) ENSPEMG00000026031 #14 ENSPEMG00000026109 ENSPEMG00000024444 ENSPEMG00000028797 ENSPEMG00000028814 ##36 ENSPEMG00000025532 ENSPEMG00000027131 ENSPEMG00000027941 #14 ENSPEMG00000024751 ENSPEMG00000026838 ENSPEMG00000027457 ENSPEMG00000024882 Or2w6 (ENSPEMG00000001581) Prairie vole DUPLICATION Prairie vole MODERN SPECIES 8 ENSMOCG00000017334 ENSMOCG00000007988 ENSMOCG00000011380 Etv3 (ENSMOCG00000016504) ENSMOCG00000020841 Fcrl5 (ENSMOCG00000016593) ENSMOCG00000018610 Cd5l (ENSMOCG00000014684) ENSMOCG00000007905 ENSMOCG00000022843 Fcrls (ENSMOCG00000011149) Kirrel (ENSMOCG00000022496) ENSMOCG00000000933 Fcgr1 (ENSMOCG00000016687) H2bc18 (ENSMOCG00000007133) #14 ENSMOCG00000014664 #25 ENSMOCG00000008172 #32 ENSMOCG00000008702 ENSMOCG00000002051 #14 ENSMOCG00000007571 H2ac21 (ENSMOCG00000008450) Bola1 (ENSMOCG00000016236) Sv2a (ENSMOCG00000000375) ENSMOCG00000013658 Mtmr11 (ENSMOCG00000017943) Otud7b (ENSMOCG00000005067) Vps45 (ENSMOCG00000014888) Plekho1 (ENSMOCG00000016679) Anp32e (ENSMOCG00000002258) Car14 (ENSMOCG00000014152) Aph1a (ENSMOCG00000022720) Prairie vole MODERN SPECIES 3 ENSMOCG00000002290 #14 ENSMOCG00000003221 ENSMOCG00000001222 ENSMOCG00000002479 #14 ENSMOCG00000014071 ENSMOCG00000001692 #14 H1f4 (ENSMOCG00000001986) ENSMOCG00000002682 ENSMOCG00000000429 #14 H1f6 (ENSMOCG00000005143) ENSMOCG00000021002 Hfe (ENSMOCG00000022056) H1f2 (ENSMOCG00000002620) ENSMOCG00000001970 ##36 ENSMOCG00000016483 ENSMOCG00000002731 #25 ENSMOCG00000002982 H3c1 (ENSMOCG00000002964) H1f1 (ENSMOCG00000002837) ENSMOCG00000013392 Slc17a2 (ENSMOCG00000017304) Slc17a3 (ENSMOCG00000010151) Slc17a1 (ENSMOCG00000022985) Slc17a4 (ENSMOCG00000015814) ENSMOCG00000002069 ##36 ENSMOCG00000005872 ENSMOCG00000016104 Scgn (ENSMOCG00000009115) Carmil1 (ENSMOCG00000012911) Cmah (ENSMOCG00000014889) ENSMOCG00000021606 Cricetinae ANCESTRAL SPECIES 78 ENSGT00940000156302 ENSGT01100000263559.A.f.e #25 ENSGT00940000155501.a.b Golden Hamster MODERN SPECIES 623 ENSMAUG00000009634 Abt1 (ENSMAUG00000009396) Btn1a1 (ENSMAUG00000009319) Btn2a2 (ENSMAUG00000008943) ENSMAUG00000008468 ENSMAUG00000018294 ENSMAUG00000018375 #14 ENSMAUG00000011800 H2bc9 (ENSMAUG00000018325) #14 ENSMAUG00000018354 H1f3 (ENSMAUG00000018389) ENSMAUG00000018261 #25 ENSMAUG00000011443 H1f4 (ENSMAUG00000018344) H1f6 (ENSMAUG00000018283) ENSMAUG00000018397 Hfe (ENSMAUG00000010990) H1f2 (ENSMAUG00000018231) ENSMAUG00000010306 ENSMAUG00000018201 ##36 ENSMAUG00000010096 ENSMAUG00000009897 H1f1 (ENSMAUG00000018142) Trim38 (ENSMAUG00000007895) Slc17a2 (ENSMAUG00000007456) Slc17a3 (ENSMAUG00000006126) Slc17a1 (ENSMAUG00000004930) Chinese hamster chok1gshd DUPLICATION Chinese hamster chok1gshd MODERN SPECIES 317 ENSCGRG00001012092 #32 H1f2 (ENSCGRG00001009982) Hfe (ENSCGRG00001022484) ENSCGRG00001010840 H1f6 (ENSCGRG00001008610) ENSCGRG00001010735 #14 ENSCGRG00001008121 H1f4 (ENSCGRG00001009883) ENSCGRG00001018578 #14 ENSCGRG00001013659 #14 ENSCGRG00001010597 ENSCGRG00001009204 ENSCGRG00001008076 ENSCGRG00001002972 #14 ENSCGRG00001003737 ENSCGRG00001008834 #25 H1f3 (ENSCGRG00001009344) ENSCGRG00001008490 ENSCGRG00001006524 #25 ENSCGRG00001008971 #14 ENSCGRG00001017238 ENSCGRG00001010968 #14 ENSCGRG00001010550 ENSCGRG00001010305 Btn2a2 (ENSCGRG00001019983) Btn1a1 (ENSCGRG00001013343) Abt1 (ENSCGRG00001002467) Zfp322a (ENSCGRG00001023553) ENSCGRG00001002420 ENSCGRG00001001272 ENSCGRG00001015553 Chinese hamster chok1gshd MODERN SPECIES 317 Vmn1r195 (ENSCGRG00001015083) Vmn1r196 (ENSCGRG00001009303) ENSCGRG00001018554 #14 ENSCGRG00001008360 ENSCGRG00001017239 ENSCGRG00001006928 #14 ENSCGRG00001007375 Prss16 (ENSCGRG00001007451) ENSCGRG00001021495 Zfp184 (ENSCGRG00001013320) ENSCGRG00001007219 #14 ENSCGRG00001007023 ENSCGRG00001005448 ##28 ENSCGRG00001012199 #14 ENSCGRG00001004775 ENSCGRG00001004680 #25 ENSCGRG00001005753 H1f5 (ENSCGRG00001009507) ENSCGRG00001009378 #14 ENSCGRG00001008389 ENSCGRG00001006519 ENSCGRG00001008581 ENSCGRG00001004777 ##36 ENSCGRG00001007911 ENSCGRG00001010333 ENSCGRG00001017731 ENSCGRG00001005687 ENSCGRG00001003420 ENSCGRG00001002589 ENSCGRG00001011750 Or2w6 (ENSCGRG00001012060) Chinese hamster chok1gshd DUPLICATION Chinese hamster chok1gshd MODERN SPECIES 66 Plekho1 (ENSCGRG00001011990) Vps45 (ENSCGRG00001024791) Otud7b (ENSCGRG00001023406) Mtmr11 (ENSCGRG00001016961) Sf3b4 (ENSCGRG00001003590) Sv2a (ENSCGRG00001020508) Bola1 (ENSCGRG00001011268) H2ac21 (ENSCGRG00001011919) ENSCGRG00001009965 ENSCGRG00001011428 #14 ENSCGRG00001010190 #25 ENSCGRG00001010788 ENSCGRG00001009035 ENSCGRG00001009755 #32 ENSCGRG00001009153 ENSCGRG00001009937 #25 H2bc18 (ENSCGRG00001006172) #14 ENSCGRG00001019293 Hjv (ENSCGRG00001009674) Txnip (ENSCGRG00001010170) Polr3gl (ENSCGRG00001023956) Ankrd34a (ENSCGRG00001006698) Lix1l (ENSCGRG00001012733) ENSCGRG00001002681 Pex11b (ENSCGRG00001007975) Itga10 (ENSCGRG00001010836) Ankrd35 (ENSCGRG00001015237) Pias3 (ENSCGRG00001023567) Nudt17 (ENSCGRG00001018476) Polr3c (ENSCGRG00001005471) Rnf115 (ENSCGRG00001002010) Chinese hamster chok1gshd MODERN SPECIES 66 Itga10 (ENSCGRG00001010836) Pex11b (ENSCGRG00001007975) ENSCGRG00001002681 Lix1l (ENSCGRG00001012733) Ankrd34a (ENSCGRG00001006698) Polr3gl (ENSCGRG00001023956) Txnip (ENSCGRG00001010170) Hjv (ENSCGRG00001009674) ENSCGRG00001019293 H2bc18 (ENSCGRG00001006172) #14 ENSCGRG00001009937 #25 ENSCGRG00001009153 ENSCGRG00001009755 #32 ENSCGRG00001009035 ENSCGRG00001010788 ENSCGRG00001010190 #25 ENSCGRG00001011428 #14 ENSCGRG00001009965 H2ac21 (ENSCGRG00001011919) Bola1 (ENSCGRG00001011268) Sv2a (ENSCGRG00001020508) Sf3b4 (ENSCGRG00001003590) Mtmr11 (ENSCGRG00001016961) Otud7b (ENSCGRG00001023406) Vps45 (ENSCGRG00001024791) Plekho1 (ENSCGRG00001011990) ENSCGRG00001017709 ENSCGRG00001022251 Car14 (ENSCGRG00001001363) Aph1a (ENSCGRG00001024346) BC028528 (ENSCGRG00001011710) Chinese hamster chok1gshd MODERN SPECIES 317 ENSCGRG00001001748 ENSCGRG00001011965 ENSCGRG00001012015 ENSCGRG00001015553 ENSCGRG00001001272 ENSCGRG00001002420 Zfp322a (ENSCGRG00001023553) Abt1 (ENSCGRG00001002467) Btn1a1 (ENSCGRG00001013343) Btn2a2 (ENSCGRG00001019983) ENSCGRG00001010305 ENSCGRG00001010550 ENSCGRG00001010968 #14 ENSCGRG00001017238 ENSCGRG00001008971 #14 ENSCGRG00001006524 #25 ENSCGRG00001008490 H1f3 (ENSCGRG00001009344) ENSCGRG00001008834 #25 ENSCGRG00001003737 ENSCGRG00001002972 #14 ENSCGRG00001008076 ENSCGRG00001009204 ENSCGRG00001010597 ENSCGRG00001013659 #14 ENSCGRG00001018578 #14 H1f4 (ENSCGRG00001009883) ENSCGRG00001008121 ENSCGRG00001010735 #14 H1f6 (ENSCGRG00001008610) ENSCGRG00001010840 Rodentia_A ANCESTRAL SPECIES ENSGT00550000075028 ENSGT00940000159172 ENSGT00940000160276 ENSGT00870000136537 ENSGT00950000182940.b.a.b ENSGT00510000048165 ENSGT00940000153118.db.a.a.b.a.b ENSGT00940000153118.db.a.a.b.a.a ENSGT01100000263575.B.u ENSGT00940000156302 ENSGT01100000263575.A ENSGT00940000153092.a.a.c.a.a ENSGT01100000263559.B #32 ENSGT00940000163082 ENSGT00940000160426 ENSGT01100000263559.A.f.e #25 ENSGT01100000263506.a.e.b #14 ENSGT01050000244808.A.b.b.a ENSGT00950000183112.b.b ENSGT00940000158522 ENSGT01060000248645 ENSGT00390000012355.B.b ENSGT00390000005869.a ENSGT00730000111185 ENSGT01050000244841.A.a.b ENSGT00390000014273.b ENSGT00940000158423 ENSGT00530000063074.a ENSGT01030000234539.a.a.b.a.a ENSGT00390000013847 ENSGT00390000002799 Hystricomorpha ANCESTRAL SPECIES 23 ENSGT00390000003103 ENSGT00390000002049.c.a ENSGT00940000156893 ENSGT00950000182907.a.a ENSGT00530000063760.b ENSGT00550000075028 ENSGT00940000159172 ENSGT00940000160276 ENSGT00870000136537 ENSGT00950000182940.b.a.b ENSGT00510000048165 ENSGT00940000153118.db.a.a.b.a.b ENSGT00940000153118.db.a.a.b.a.a ENSGT01100000263575.B.u ENSGT00940000156302 ENSGT01100000263559.A.f.e #25 ENSGT01100000263506.a.e.b #14 ENSGT01050000244808.A.b.b.a ENSGT00950000183112.b.b ENSGT00940000158522 ENSGT01100000264175 ENSGT00390000012355.B.b ENSGT00390000005869.a ENSGT00730000111185 ENSGT01050000244841.A.a.b ENSGT00390000014273.b ENSGT00940000158423 ENSGT00530000063074.a ENSGT01030000234539.a.a.b.a.a ENSGT00390000013847 ENSGT00390000002799 Naked mole-rat female DUPLICATION Naked mole-rat female MODERN SPECIES 30 ENSHGLG00000007715 ENSHGLG00000006288 ENSHGLG00000007387 ENSHGLG00000011910 ENSHGLG00000043882 ENSHGLG00000044427 NKAPL (ENSHGLG00000035910) ENSHGLG00000043206 ENSHGLG00000005144 ENSHGLG00000039085 ENSHGLG00000005106 ENSHGLG00000037822 ENSHGLG00000005055 ENSHGLG00000049036 ENSHGLG00000050901 ENSHGLG00000033143 #25 ENSHGLG00000020815 ENSHGLG00000046806 ##36 ENSHGLG00000042768 #14 ENSHGLG00000041663 ##28 ENSHGLG00000039390 ENSHGLG00000035121 ##36 ENSHGLG00000012917 EHMT1 (ENSHGLG00000013813) ENSHGLG00000045707 ARRDC1 (ENSHGLG00000014897) ZMYND19 (ENSHGLG00000035090) DPH7 (ENSHGLG00000035731) ENSHGLG00000015326 PNPLA7 (ENSHGLG00000042180) NSMF (ENSHGLG00000011789) Naked mole-rat female MODERN SPECIES 10 C1orf54 (ENSHGLG00000016156) APH1A (ENSHGLG00000009612) CA14 (ENSHGLG00000035588) ENSHGLG00000032045 ENSHGLG00000005468 ENSHGLG00000015344 PLEKHO1 (ENSHGLG00000046314) VPS45 (ENSHGLG00000018897) OTUD7B (ENSHGLG00000019136) MTMR11 (ENSHGLG00000013532) SF3B4 (ENSHGLG00000012360) SV2A (ENSHGLG00000011320) BOLA1 (ENSHGLG00000033803) ENSHGLG00000039058 ENSHGLG00000015936 ENSHGLG00000036146 #25 HIST1H4I (ENSHGLG00000040309) ENSHGLG00000040039 #14 ENSHGLG00000038422 ENSHGLG00000009060 ENSHGLG00000035132 ENSHGLG00000005199 ANKRD34A (ENSHGLG00000009270) ENSHGLG00000005879 LIX1L (ENSHGLG00000008928) RBM8A (ENSHGLG00000033593) ENSHGLG00000006230 PEX11B (ENSHGLG00000005185) ITGA10 (ENSHGLG00000010384) ANKRD35 (ENSHGLG00000008812) PIAS3 (ENSHGLG00000005009) Naked mole-rat female MODERN SPECIES 28 ENSHGLG00000040774 ENSHGLG00000005661 ENSHGLG00000003968 ENSHGLG00000046171 ENSHGLG00000033066 ENSHGLG00000033181 ENSHGLG00000038843 ENSHGLG00000008348 ENSHGLG00000040861 ENSHGLG00000042296 ENSHGLG00000048990 HIST1H4I (ENSHGLG00000032537) ENSHGLG00000049422 ENSHGLG00000042290 ENSHGLG00000043227 #14 ENSHGLG00000004694 #25 HIST1H4I (ENSHGLG00000047844) ENSHGLG00000045351 ENSHGLG00000006505 ENSHGLG00000048321 ENSHGLG00000043363 ##36 ENSHGLG00000039281 ##36 ENSHGLG00000040977 HIST1H4I (ENSHGLG00000051005) ENSHGLG00000038626 #14 H1-4 (ENSHGLG00000045582) ENSHGLG00000040023 ENSHGLG00000033074 #14 ENSHGLG00000006448 HIST1H1C (ENSHGLG00000049913) ENSHGLG00000042839 #32 Hystricomorpha_a ANCESTRAL SPECIES 59 ENSGT00390000003103 ENSGT00390000002049.c.a ENSGT00940000156893 ENSGT00950000182907.a.a ENSGT00530000063760.b ENSGT00550000075028 ENSGT00940000159172 ENSGT00940000160276 ENSGT00870000136537 ENSGT00950000182940.b.a.b ENSGT00510000048165 ENSGT00940000153118.db.a.a.b.a.b ENSGT00940000153118.db.a.a.b.a.a ENSGT01100000263575.B.u ENSGT00940000156302 ENSGT01100000263559.A.f.e #25 ENSGT01100000263506.a.e.b #14 ENSGT01050000244808.A.b.b.a Guinea pig DUPLICATION Guinea pig MODERN SPECIES 108 ENSCPOG00000023684 GMDS (ENSCPOG00000012254) EXOC2 (ENSCPOG00000003605) IRF4 (ENSCPOG00000003562) DUSP22 (ENSCPOG00000013650) Cavporv1r658 (ENSCPOG00000033301) Cavporv1r655 (ENSCPOG00000034461) Cavporv1r654 (ENSCPOG00000022083) ENSCPOG00000032483 #14 ENSCPOG00000040632 ENSCPOG00000037278 PRSS16 (ENSCPOG00000025072) ENSCPOG00000013183 ENSCPOG00000037797 #14 ENSCPOG00000034040 ENSCPOG00000039185 #25 ENSCPOG00000032928 ENSCPOG00000039093 #14 ENSCPOG00000040174 ENSCPOG00000035152 ENSCPOG00000033709 #14 ENSCPOG00000012550 ENSCPOG00000024747 ENSCPOG00000027388 ZKSCAN8 (ENSCPOG00000001885) ZSCAN9 (ENSCPOG00000013706) NKAPL (ENSCPOG00000039853) ZSCAN26 (ENSCPOG00000039310) ENSCPOG00000035056 ENSCPOG00000026710 ENSCPOG00000030197 Guinea pig MODERN SPECIES 2 VPS45 (ENSCPOG00000002536) OTUD7B (ENSCPOG00000001517) MTMR11 (ENSCPOG00000008271) SF3B4 (ENSCPOG00000008267) SV2A (ENSCPOG00000010250) BOLA1 (ENSCPOG00000010247) H2AC21 (ENSCPOG00000030869) H2AC20 (ENSCPOG00000036942) ENSCPOG00000034161 ENSCPOG00000033740 #25 ENSCPOG00000034514 ENSCPOG00000031424 ENSCPOG00000030965 ENSCPOG00000031270 ENSCPOG00000030241 ENSCPOG00000037353 #25 H2BC18 (ENSCPOG00000030049) #14 ENSCPOG00000033096 ENSCPOG00000040788 LINGO2 (ENSCPOG00000008899) C9orf72 (ENSCPOG00000009473) ENSCPOG00000000866 MOB3B (ENSCPOG00000009470) TEK (ENSCPOG00000009907) LRRC19 (ENSCPOG00000012981) IFT74 (ENSCPOG00000012980) PLAA (ENSCPOG00000012969) ENSCPOG00000032640 CAAP1 (ENSCPOG00000037143) ELAVL2 (ENSCPOG00000010472) DMRTA1 (ENSCPOG00000036480) Guinea pig MODERN SPECIES 2 LRRC19 (ENSCPOG00000012981) TEK (ENSCPOG00000009907) MOB3B (ENSCPOG00000009470) ENSCPOG00000000866 C9orf72 (ENSCPOG00000009473) LINGO2 (ENSCPOG00000008899) ENSCPOG00000040788 ENSCPOG00000033096 H2BC18 (ENSCPOG00000030049) #14 ENSCPOG00000037353 #25 ENSCPOG00000030241 ENSCPOG00000031270 ENSCPOG00000030965 ENSCPOG00000031424 ENSCPOG00000034514 ENSCPOG00000033740 #25 ENSCPOG00000034161 H2AC20 (ENSCPOG00000036942) H2AC21 (ENSCPOG00000030869) BOLA1 (ENSCPOG00000010247) SV2A (ENSCPOG00000010250) SF3B4 (ENSCPOG00000008267) MTMR11 (ENSCPOG00000008271) OTUD7B (ENSCPOG00000001517) VPS45 (ENSCPOG00000002536) PLEKHO1 (ENSCPOG00000021117) ANP32E (ENSCPOG00000013941) CA14 (ENSCPOG00000006079) APH1A (ENSCPOG00000006509) C1orf54 (ENSCPOG00000026169) ENSCPOG00000035575 Hystricomorpha_b ANCESTRAL SPECIES 182 ENSGT01100000263474.a.b.b.f ##36 ENSGT01100000263559.A.f.e #25 Long-tailed chinchilla DUPLICATION Long-tailed chinchilla MODERN SPECIES 120 C1orf54 (ENSCLAG00000012077) APH1A (ENSCLAG00000013532) CA14 (ENSCLAG00000015749) ANP32E (ENSCLAG00000016237) PLEKHO1 (ENSCLAG00000011850) VPS45 (ENSCLAG00000013589) OTUD7B (ENSCLAG00000015021) MTMR11 (ENSCLAG00000014280) SF3B4 (ENSCLAG00000015851) SV2A (ENSCLAG00000014270) BOLA1 (ENSCLAG00000014314) H2AC21 (ENSCLAG00000017864) H2AC20 (ENSCLAG00000017761) H2BC21 (ENSCLAG00000017898) ENSCLAG00000017827 ##36 H3-7 (ENSCLAG00000011860) #25 ENSCLAG00000018054 H2BC18 (ENSCLAG00000017913) #14 FCGR1A (ENSCLAG00000012978) ENSCLAG00000013809 ENSCLAG00000013150 PRMT8 (ENSCLAG00000014521) CRACR2A (ENSCLAG00000013246) PARP11 (ENSCLAG00000012852) CCND2 (ENSCLAG00000012527) TIGAR (ENSCLAG00000013103) FGF23 (ENSCLAG00000014451) FGF6 (ENSCLAG00000013612) C12orf4 (ENSCLAG00000012415) RAD51AP1 (ENSCLAG00000013907) DYRK4 (ENSCLAG00000016008) Long-tailed chinchilla MODERN SPECIES 190 H1-3 (ENSCLAG00000017591) ENSCLAG00000017552 ENSCLAG00000017593 #32 ENSCLAG00000017451 #36 ENSCLAG00000017446 ENSCLAG00000017500 #14 ENSCLAG00000001902 H2BC4 (ENSCLAG00000001916) #14 ENSCLAG00000017464 HFE (ENSCLAG00000002257) H1-2 (ENSCLAG00000017517) ENSCLAG00000017481 #32 ENSCLAG00000017519 H2BC3 (ENSCLAG00000002412) ENSCLAG00000017485 ENSCLAG00000002673 #25 ENSCLAG00000017508 ENSCLAG00000017561 ENSCLAG00000002704 H1-1 (ENSCLAG00000017524) ENSCLAG00000003371 ENSCLAG00000001925 ENSCLAG00000001954 SLC17A2 (ENSCLAG00000001995) SLC17A3 (ENSCLAG00000002031) SLC17A1 (ENSCLAG00000002155) SLC17A4 (ENSCLAG00000002246) ENSCLAG00000017468 ##36 H2AC1 (ENSCLAG00000017466) SCGN (ENSCLAG00000002363) CARMIL1 (ENSCLAG00000002103) Degu DUPLICATION Degu MODERN SPECIES 89 ENSODEG00000012686 ENSODEG00000013067 APH1A (ENSODEG00000011643) CA14 (ENSODEG00000012540) ENSODEG00000013093 PLEKHO1 (ENSODEG00000011477) VPS45 (ENSODEG00000012615) ENSODEG00000019951 OTUD7B (ENSODEG00000011926) MTMR11 (ENSODEG00000012623) SV2A (ENSODEG00000011688) BOLA1 (ENSODEG00000020128) H2AC21 (ENSODEG00000019872) ENSODEG00000011653 #14 H2BC21 (ENSODEG00000011247) ENSODEG00000013136 #25 ENSODEG00000020205 H2BC18 (ENSODEG00000020003) #14 EML6 (ENSODEG00000011885) ENSODEG00000012809 CLHC1 (ENSODEG00000012708) ENSODEG00000012372 RPS27A (ENSODEG00000013305) MTIF2 (ENSODEG00000013203) ENSODEG00000013135 CCDC88A (ENSODEG00000011846) ENSODEG00000014229 PPP4R3B (ENSODEG00000012869) PNPT1 (ENSODEG00000012137) ENSODEG00000012486 EFEMP1 (ENSODEG00000014621) Degu MODERN SPECIES 160 OR14J1 (ENSODEG00000020074) ENSODEG00000013745 ENSODEG00000012723 ENSODEG00000012485 ABT1 (ENSODEG00000014676) BTN1A1 (ENSODEG00000013656) BTN2A2 (ENSODEG00000013492) ENSODEG00000020041 ENSODEG00000014935 ENSODEG00000015343 ENSODEG00000013504 #25 ENSODEG00000013667 #32 ENSODEG00000013885 #25 ENSODEG00000013815 ENSODEG00000013335 ENSODEG00000015259 ENSODEG00000013294 ENSODEG00000013476 #14 HFE (ENSODEG00000015440) ENSODEG00000013990 #32 H1-1 (ENSODEG00000020218) ENSODEG00000020110 ENSODEG00000020246 SLC17A2 (ENSODEG00000013372) SLC17A3 (ENSODEG00000013677) SLC17A1 (ENSODEG00000014265) SLC17A4 (ENSODEG00000014939) ENSODEG00000020202 ##36 Sciuridae ANCESTRAL SPECIES 1 ENSGT01100000263506.a.e.a.a.a.b.a.a.a.s #14 ENSGT00940000163525 ENSGT01100000263517.b.d.m.a.a.b ENSGT00940000163082 ENSGT01100000263575.A ENSGT01100000263575.B.t.a.b ENSGT00940000156302 ENSGT01100000263559.A.f.e #25 ENSGT00940000153118.db.b ENSGT01060000248528.b.jh.a.a.a ENSGT01100000263474.a.b.b.e.a.a.a.a ##36 ENSGT00940000155501.a.a ENSGT00940000153092.a.b.f ENSGT01100000263506.a.e.a.a.a.b.a.a.b.a.a #14 ENSGT01060000248528.b.kh.yb.b ENSGT00940000153118.db.a.a.a ENSGT01100000263795 ENSGT00940000155501.a.b ENSGT00940000153092.a.a.c.a.a ENSGT01100000263559.B #32 ENSGT01060000248528.b.jh.b ENSGT01100000263514.A.e.a.b.a.b.a.a.a.b.a.a.b ENSGT00990000203553.c.b #28 Eurasian red squirrel DUPLICATION Eurasian red squirrel MODERN SPECIES ENSSVLG00005000516 OTUD7B (ENSSVLG00005000477) MTMR11 (ENSSVLG00005000407) SF3B4 (ENSSVLG00005000373) SV2A (ENSSVLG00005000231) BOLA1 (ENSSVLG00005000149) H2AC21 (ENSSVLG00005000146) H2AC20 (ENSSVLG00005000144) H2BC21 (ENSSVLG00005000140) H2AC19 (ENSSVLG00005000135) ENSSVLG00005000132 ENSSVLG00005000127 ENSSVLG00005000124 ENSSVLG00005000095 #25 ENSSVLG00005000088 ENSSVLG00005004594 #25 H2BC18 (ENSSVLG00005004581) #14 FCGR1A (ENSSVLG00005004523) HJV (ENSSVLG00005004426) TXNIP (ENSSVLG00005004403) POLR3GL (ENSSVLG00005004386) ANKRD34A (ENSSVLG00005004364) LIX1L (ENSSVLG00005004342) RBM8A (ENSSVLG00005004314) ENSSVLG00005004296 PEX11B (ENSSVLG00005004265) ITGA10 (ENSSVLG00005004180) ANKRD35 (ENSSVLG00005004120) PIAS3 (ENSSVLG00005004062) NUDT17 (ENSSVLG00005004030) POLR3C (ENSSVLG00005004005) Eurasian red squirrel MODERN SPECIES PLEKHO1 (ENSSVLG00005000612) ENSSVLG00005000542 ENSSVLG00005000516 OTUD7B (ENSSVLG00005000477) MTMR11 (ENSSVLG00005000407) SF3B4 (ENSSVLG00005000373) SV2A (ENSSVLG00005000231) BOLA1 (ENSSVLG00005000149) H2AC21 (ENSSVLG00005000146) H2AC20 (ENSSVLG00005000144) H2BC21 (ENSSVLG00005000140) H2AC19 (ENSSVLG00005000135) ENSSVLG00005000132 ENSSVLG00005000127 ENSSVLG00005000124 ENSSVLG00005000095 #25 ENSSVLG00005000088 ENSSVLG00005004594 #25 H2BC18 (ENSSVLG00005004581) #14 FCGR1A (ENSSVLG00005004523) HJV (ENSSVLG00005004426) TXNIP (ENSSVLG00005004403) POLR3GL (ENSSVLG00005004386) ANKRD34A (ENSSVLG00005004364) LIX1L (ENSSVLG00005004342) RBM8A (ENSSVLG00005004314) ENSSVLG00005004296 PEX11B (ENSSVLG00005004265) ITGA10 (ENSSVLG00005004180) ANKRD35 (ENSSVLG00005004120) PIAS3 (ENSSVLG00005004062) Eurasian red squirrel MODERN SPECIES 16 ENSSVLG00005016824 ENSSVLG00005016812 #14 ENSSVLG00005016774 ENSSVLG00005016737 ENSSVLG00005016712 ENSSVLG00005016668 ENSSVLG00005016620 ENSSVLG00005016586 ABT1 (ENSSVLG00005016454) BTN1A1 (ENSSVLG00005016378) BTN2A2 (ENSSVLG00005016352) ENSSVLG00005015971 ENSSVLG00005015918 ENSSVLG00005015900 ENSSVLG00005015881 ENSSVLG00005015860 #25 ENSSVLG00005015847 H1-3 (ENSSVLG00005015829) ENSSVLG00005015808 #14 H2AC7 (ENSSVLG00005015788) ENSSVLG00005015768 #25 ENSSVLG00005015745 ENSSVLG00005015689 ##36 ENSSVLG00005015665 ##36 H1-4 (ENSSVLG00005015645) H2AC6 (ENSSVLG00005015625) H2BC4 (ENSSVLG00005015614) #14 H1-6 (ENSSVLG00005015594) ENSSVLG00005015579 ENSSVLG00005015136 ENSSVLG00005015027 ##31 Eurasian red squirrel MODERN SPECIES 16 ENSSVLG00005016668 ENSSVLG00005016620 ENSSVLG00005016586 ABT1 (ENSSVLG00005016454) BTN1A1 (ENSSVLG00005016378) BTN2A2 (ENSSVLG00005016352) ENSSVLG00005015971 ENSSVLG00005015918 ENSSVLG00005015900 ENSSVLG00005015881 ENSSVLG00005015860 #25 ENSSVLG00005015847 H1-3 (ENSSVLG00005015829) ENSSVLG00005015808 #14 H2AC7 (ENSSVLG00005015788) ENSSVLG00005015768 #25 ENSSVLG00005015745 ENSSVLG00005015689 ##36 ENSSVLG00005015665 ##36 H1-4 (ENSSVLG00005015645) H2AC6 (ENSSVLG00005015625) H2BC4 (ENSSVLG00005015614) #14 H1-6 (ENSSVLG00005015594) ENSSVLG00005015579 ENSSVLG00005015136 ENSSVLG00005015027 ##31 ENSSVLG00005015008 #14 ENSSVLG00005014988 ENSSVLG00005014863 H1-2 (ENSSVLG00005014836) ENSSVLG00005014821 #32 Marmotini ANCESTRAL SPECIES 40 ENSGT01100000263486.a.b.b ENSGT01100000263486.a.a ENSGT01100000263548.a.b.b ENSGT00940000153092.a.a.d.b ENSGT01100000263514.A.e.a.b.a.a.d ENSGT00940000162950 ENSGT01100000263504.a.b.b.b.a.b ENSGT01100000263506.a.e.a.a.a.b.a.a.b.a.b.a.a.a.l #14 ENSGT01100000263474.a.b.b.e.a.a.a.b ##36 ENSGT01100000263506.a.e.a.a.a.b.a.a.b.a.b.a.a.a.k.b #14 ENSGT00940000153092.a.a.c.a.a ENSGT01100000263559.A.f.e #25 ENSGT00940000153118.db.b ENSGT01100000263474.a.b.b.e.a.a.b ##36 ENSGT00940000162941 ENSGT00940000153253.b.a.h ENSGT00940000160281 ENSGT00940000153125.C ENSGT01030000234553.b.b.c.b.a.c.a.b.b.a.b ENSGT00940000162956 ENSGT00390000002062 ENSGT00940000161530 ENSGT00940000158017 ENSGT00940000162723 ENSGT01060000248528.b.jh.a.b ENSGT01100000263506.a.e.a.a.a.a.b.a #14 ENSGT00940000155501.a.a Marmotini_b ANCESTRAL SPECIES 397 ENSGT01100000263559.A.f.e #25 ENSGT00940000153118.db.b Squirrel MODERN SPECIES 271 ENSSTOG00000030249 ENSSTOG00000033423 ENSSTOG00000029728 ENSSTOG00000023645 ENSSTOG00000033773 ENSSTOG00000030654 ENSSTOG00000028749 #14 ENSSTOG00000026144 ENSSTOG00000023310 H2BC12 (ENSSTOG00000029261) #14 H2AC12 (ENSSTOG00000007236) PRSS16 (ENSSTOG00000005984) ENSSTOG00000030356 ENSSTOG00000034579 ENSSTOG00000031831 ENSSTOG00000030706 #25 ENSSTOG00000031850 ENSSTOG00000023857 ENSSTOG00000020367 #14 ENSSTOG00000006125 ##31 H1-5 (ENSSTOG00000006133) ENSSTOG00000028684 ENSSTOG00000022024 ENSSTOG00000032396 ENSSTOG00000027672 ENSSTOG00000023688 ENSSTOG00000004326 ENSSTOG00000019623 Alpin marmot DUPLICATION Alpin marmot MODERN SPECIES 85 PRPF3 (ENSMMMG00000019495) CIART (ENSMMMG00000019509) C1orf54 (ENSMMMG00000019516) APH1A (ENSMMMG00000019524) CA14 (ENSMMMG00000019528) ENSMMMG00000019537 PLEKHO1 (ENSMMMG00000019549) VPS45 (ENSMMMG00000019551) OTUD7B (ENSMMMG00000019569) MTMR11 (ENSMMMG00000019604) ENSMMMG00000019615 SV2A (ENSMMMG00000019622) H2AC20 (ENSMMMG00000019626) H2BC21 (ENSMMMG00000019629) ENSMMMG00000019631 ENSMMMG00000019638 #25 H2BC18 (ENSMMMG00000019640) #14 FCGR1A (ENSMMMG00000019645) ENSMMMG00000019733 Alpin marmot MODERN SPECIES 36 ENSMMMG00000002756 ENSMMMG00000002753 ENSMMMG00000002747 ENSMMMG00000002733 #35 ENSMMMG00000002722 ENSMMMG00000002717 H1-5 (ENSMMMG00000002713) ENSMMMG00000002666 #14 ENSMMMG00000002660 ##36 ENSMMMG00000002656 ENSMMMG00000002649 ENSMMMG00000002642 #14 ENSMMMG00000002580 ENSMMMG00000002574 #25 ENSMMMG00000002552 ENSMMMG00000002542 #14 ENSMMMG00000002530 ZNF184 (ENSMMMG00000002511) ENSMMMG00000002497 ENSMMMG00000002485 ENSMMMG00000002473 ENSMMMG00000002438 ENSMMMG00000002431 #14 ENSMMMG00000002427 ENSMMMG00000002421 ENSMMMG00000002413 #14 ENSMMMG00000002407 ENSMMMG00000002403 ZNF322 (ENSMMMG00000002401) Alpin marmot MODERN SPECIES 36 BTN1A1 (ENSMMMG00000002339) BTN2A2 (ENSMMMG00000002247) ENSMMMG00000002131 ENSMMMG00000002108 ENSMMMG00000002069 #14 ENSMMMG00000002062 ENSMMMG00000002058 ENSMMMG00000002055 #14 ENSMMMG00000002041 ENSMMMG00000002037 H1-3 (ENSMMMG00000002023) ENSMMMG00000001989 ##28 ENSMMMG00000001983 ENSMMMG00000001975 #14 ENSMMMG00000001937 ENSMMMG00000001926 #25 ENSMMMG00000001920 ENSMMMG00000001916 #14 ENSMMMG00000001889 #14 H1-4 (ENSMMMG00000001870) H2AC6 (ENSMMMG00000001865) ENSMMMG00000001860 #14 H1-6 (ENSMMMG00000001853) ENSMMMG00000001847 HFE (ENSMMMG00000001838) H1-2 (ENSMMMG00000001827) ENSMMMG00000001825 #32 H2BC3 (ENSMMMG00000001823) H2AC4 (ENSMMMG00000001814) ENSMMMG00000001805 #32 ENSMMMG00000001800 Laurasiatheria ANCESTRAL SPECIES ENSGT01100000263506.a.e.a.a.b.a #14 ENSGT00940000153092.a.a.c.a.a ENSGT01100000263514.A.e.a.b.a.b.a.a.a.b.a.b ENSGT00940000153125.C ENSGT01100000263506.a.e.a.a.a.a.b.b #14 ENSGT00990000203553.c.a.a.a.b ##28 ENSGT01100000263514.A.e.a.b.a.b.a.a.a.a ENSGT00940000153092.a.a.c.a.b ENSGT01100000263575.A ENSGT01100000263575.B.t.a.a.a ENSGT00940000156302 ENSGT01100000263559.B #32 ENSGT01100000263569.a.b.b ENSGT00940000164494 ENSGT01060000248528.a.b.a.a.a.b ENSGT01100000263559.A.f #25 ENSGT01100000263506.a.e.b #14 ENSGT01050000244808.A.b.b.a ENSGT00950000183190.a.b.a.b ENSGT00420000029746.f ENSGT00950000183112.b.b ENSGT00940000158522 ENSGT01060000248645 ENSGT00390000012355.B.b ENSGT00390000005869.a ENSGT00730000111185 ENSGT01050000244841.A.a.b ENSGT00390000014273.b ENSGT00940000158423 ENSGT00530000063074.a ENSGT01030000234539.a.a.b.a.a Eulipotyphla ANCESTRAL SPECIES ENSGT01100000263559.A.f #25 Common shrew MODERN SPECIES 7832 ENSSARG00000010332 #25 Laurasiatheria_a ANCESTRAL SPECIES ENSGT00870000136537 ENSGT00950000182940.b.a.b ENSGT00510000048165 ENSGT00940000153118.db.a.a.b.a.b ENSGT00940000153118.db.a.a.b.a.a ENSGT01100000263575.A ENSGT00940000153092.a.a.c.a.b ENSGT01100000263514.A.e.a.b.a.b.a.a.a.a ENSGT00990000203553.c.a.a.a.b ##28 ENSGT01100000263575.B.u ENSGT00940000156302 ENSGT01100000263559.B #32 ENSGT01100000263569.a.b.b ENSGT00940000164494 ENSGT01060000248528.a.b.a.a.a.b ENSGT01100000263559.A.f #25 ENSGT01100000263506.a.e.b #14 ENSGT01050000244808.A.b.b.a ENSGT00950000183190.a.b.a.b ENSGT00420000029746.f ENSGT00950000183112.b.b ENSGT00940000158522 ENSGT01060000248645 ENSGT00390000012355.B.b ENSGT00390000005869.a ENSGT00730000111185 ENSGT01050000244841.A.a.b ENSGT00390000014273.b ENSGT00940000158423 ENSGT00530000063074.a ENSGT01030000234539.a.a.b.a.a Laurasiatheria_b ANCESTRAL SPECIES 7 ENSGT01030000234553.b.b.c.b.b ENSGT00940000162956 ENSGT01090000259995.b.a.a.a.a.b ENSGT00390000002062 ENSGT00950000182802.B.a.a.b ENSGT00940000161530 ENSGT01060000248528.b.kh.xb.a.b ENSGT01100000263517.b.d.m.a.a.b ENSGT00940000163082 ENSGT01100000263514.A.e.a.b.a.b.a.a.a.b.a.a.a.b ENSGT00940000160426 ENSGT01100000263506.a.e.a.a.a.b.a.a.b.a.b.b #14 ENSGT01100000263506.a.e.a.a.a.b.a.a.b.a.b.a.a.b #14 ENSGT00940000163525 ENSGT01060000248528.b.kh.yb.c.a ENSGT01100000263559.A.f #25 ENSGT01100000263575.B.u ENSGT00940000156302 ENSGT01100000263559.B #32 ENSGT01060000248528.b.kh.yb.d ENSGT01100000263506.a.e.a.a.a.b.a.a.b.a.b.a.a.a #14 ENSGT00940000153092.a.b.f ENSGT00940000155501.a.a ENSGT01100000263474.a.b.b.e.a.a.a.b ##36 ENSGT00940000162950 ENSGT01100000263514.A.e.a.b.a.b.a.a.a.a ENSGT01100000263514.A.e.a.b.a.b.a.b ENSGT00940000163269 ENSGT00940000160468 ENSGT00940000161926 ENSGT00940000162523 Carnivora ANCESTRAL SPECIES 1 ENSGT00940000156893 ENSGT00950000182907.a.a ENSGT00530000063760.b ENSGT00550000075028 ENSGT00940000159172 ENSGT00940000160276 ENSGT00870000136537 ENSGT00950000182940.b.a.b ENSGT00510000048165 ENSGT00940000153118.db.a.a.b.a.b ENSGT00940000153118.db.a.a.b.a.a ENSGT01100000263575.A ENSGT00940000153092.a.a.c.a.b ENSGT01100000263575.B.u ENSGT00940000156302 ENSGT01100000263559.A.f #25 ENSGT01100000263506.a.e.b #14 ENSGT01050000244808.A.b.b.a ENSGT00950000183190.a.b.a.b ENSGT00420000029746.f ENSGT00950000183112.b.b ENSGT00940000158522 ENSGT01060000248645 ENSGT00390000012355.B.b ENSGT00390000005869.a ENSGT00730000111185 ENSGT01050000244841.A.a.b ENSGT00390000014273.b ENSGT00940000158423 ENSGT00530000063074.a ENSGT01030000234539.a.a.b.a.a Felidae ANCESTRAL SPECIES 44 ENSGT01060000248528.b.jh.b ENSGT01100000263559.A.f #25 ENSGT01060000248528.b.kh.xb.a.a Panthera ANCESTRAL SPECIES 40 ENSGT00390000003103 ENSGT00390000002049.c.a ENSGT00940000156893 ENSGT00950000182907.a.a ENSGT00530000063760.b ENSGT00550000075028 ENSGT00940000159172 ENSGT00940000160276 ENSGT00870000136537 ENSGT00950000182940.b.a.b ENSGT00510000048165 ENSGT00940000153118.db.a.a.b.a.b ENSGT00940000153118.db.a.a.b.a.a ENSGT01100000263575.B.u ENSGT01060000248528.b.jh.b ENSGT01100000263559.A.f #25 ENSGT01100000263506.a.e.b #14 ENSGT01050000244808.A.b.b.a ENSGT00390000016972.a.b.b ENSGT00950000183190.a.b.a.b ENSGT00420000029746.f Panthera_a ANCESTRAL SPECIES 79 ENSGT01100000263504.a.b.b.b.a.a ENSGT00940000153092.a.a.c.a.a ENSGT01100000263575.A ENSGT00940000156302 ENSGT01100000263559.B #32 ENSGT01060000248528.b.jh.b ENSGT01100000263559.A.f #25 ENSGT01100000263506.a.e.b #14 ENSGT01050000244808.A.b.b.a ENSGT00390000016972.a.b.b ENSGT00950000183190.a.b.a.b ENSGT00420000029746.f lion MODERN SPECIES 258 ENSPLOG00000019966 H3-7 (ENSPLOG00000019985) #25 H2BC18 (ENSPLOG00000020001) #14 FCGR1A (ENSPLOG00000020037) ENSPLOG00000020126 ENSPLOG00000020136 ENSPLOG00000020168 Cat DUPLICATION Cat MODERN SPECIES 239 PRPF3 (ENSFCAG00000013940) ENSFCAG00000034082 CIART (ENSFCAG00000013937) CC1H1orf54 (ENSFCAG00000013939) CA14 (ENSFCAG00000013934) APH1A (ENSFCAG00000030589) ANP32E (ENSFCAG00000022278) PLEKHO1 (ENSFCAG00000035563) VPS45 (ENSFCAG00000010112) OTUD7B (ENSFCAG00000010110) MTMR11 (ENSFCAG00000010108) SF3B4 (ENSFCAG00000010106) ENSFCAG00000051403 SV2A (ENSFCAG00000010104) H2BC19 (ENSFCAG00000044074) #14 ENSFCAG00000047792 #25 H4C14 (ENSFCAG00000023368) H3C13 (ENSFCAG00000045408) #25 H2BC18 (ENSFCAG00000046241) #14 FCGR1A (ENSFCAG00000027331) ENSFCAG00000044482 ENSFCAG00000025610 ENSFCAG00000031642 HJV (ENSFCAG00000043881) TXNIP (ENSFCAG00000029919) POLR3GL (ENSFCAG00000005410) ANKRD34A (ENSFCAG00000002723) LIX1L (ENSFCAG00000033679) RBM8A (ENSFCAG00000033936) PEX11B (ENSFCAG00000030808) ITGA10 (ENSFCAG00000005415) Cat MODERN SPECIES 239 CIART (ENSFCAG00000013937) CC1H1orf54 (ENSFCAG00000013939) CA14 (ENSFCAG00000013934) APH1A (ENSFCAG00000030589) ANP32E (ENSFCAG00000022278) PLEKHO1 (ENSFCAG00000035563) VPS45 (ENSFCAG00000010112) OTUD7B (ENSFCAG00000010110) MTMR11 (ENSFCAG00000010108) SF3B4 (ENSFCAG00000010106) ENSFCAG00000051403 SV2A (ENSFCAG00000010104) H2BC19 (ENSFCAG00000044074) #14 ENSFCAG00000047792 #25 H4C14 (ENSFCAG00000023368) H3C13 (ENSFCAG00000045408) #25 H2BC18 (ENSFCAG00000046241) #14 FCGR1A (ENSFCAG00000027331) ENSFCAG00000044482 ENSFCAG00000025610 ENSFCAG00000031642 HJV (ENSFCAG00000043881) TXNIP (ENSFCAG00000029919) POLR3GL (ENSFCAG00000005410) ANKRD34A (ENSFCAG00000002723) LIX1L (ENSFCAG00000033679) RBM8A (ENSFCAG00000033936) PEX11B (ENSFCAG00000030808) ITGA10 (ENSFCAG00000005415) ANKRD35 (ENSFCAG00000005416) PIAS3 (ENSFCAG00000031238) Caniformia ANCESTRAL SPECIES 31 ENSGT00390000003103 ENSGT00390000002049.c.a ENSGT00940000156893 ENSGT00950000182907.a.a ENSGT00530000063760.b ENSGT00550000075028 ENSGT00940000159172 ENSGT00940000160276 ENSGT00870000136537 ENSGT00950000182940.b.a.b ENSGT00510000048165 ENSGT00940000153118.db.a.a.b.a.b ENSGT00940000153118.db.a.a.b.a.a ENSGT01100000263575.B.u ENSGT01060000248528.b.kh.yb.c.a ENSGT01100000263559.A.f #25 ENSGT01060000248528.b.jh.a.b ENSGT01100000263559.B #32 ENSGT01100000263506.a.e.b #14 ENSGT01050000244808.A.b.b.a ENSGT00950000183190.a.b.a.b ENSGT00420000029746.f ENSGT00950000183112.b.b ENSGT00940000158522 ENSGT01060000248645 ENSGT00390000012355.B.b ENSGT00390000005869.a ENSGT00730000111185 ENSGT01050000244841.A.a.b ENSGT00390000014273.b ENSGT00940000158423 Canidae ANCESTRAL SPECIES 18 ENSGT00390000003103 ENSGT00390000002049.c.a ENSGT00940000156893 ENSGT00950000182907.a.a ENSGT00530000063760.b ENSGT00550000075028 ENSGT00940000159172 ENSGT00940000160276 ENSGT00870000136537 ENSGT00950000182940.b.a.b ENSGT00510000048165 ENSGT00940000153118.db.a.a.b.a.b ENSGT00940000153118.db.a.a.b.a.a ENSGT01100000263575.B.u ENSGT01060000248528.b.kh.yb.c.a ENSGT01100000263559.A.f #25 ENSGT01100000263506.a.e.b #14 ENSGT01050000244808.A.b.b.a ENSGT00950000183190.a.b.a.b ENSGT00420000029746.f ENSGT00950000183112.b.b ENSGT00940000158522 ENSGT01100000263883 ENSGT00390000012355.B.b ENSGT00390000005869.a ENSGT00730000111185 ENSGT00910000145379 ENSGT00390000014273.b ENSGT00940000158423 ENSGT00530000063074.a ENSGT01030000234539.a.a.b.a.a Red fox MODERN SPECIES 176 CIART (ENSVVUG00000007857) APH1A (ENSVVUG00000007850) CA14 (ENSVVUG00000007843) ENSVVUG00000007839 PLEKHO1 (ENSVVUG00000007828) VPS45 (ENSVVUG00000007786) OTUD7B (ENSVVUG00000007773) MTMR11 (ENSVVUG00000007745) ENSVVUG00000007732 SV2A (ENSVVUG00000007726) BOLA1 (ENSVVUG00000007718) H2AC21 (ENSVVUG00000007714) H2AC20 (ENSVVUG00000007707) H2BC21 (ENSVVUG00000007671) ENSVVUG00000007660 H3-7 (ENSVVUG00000007640) #25 H2BC18 (ENSVVUG00000007606) #14 ENSVVUG00000007601 ENSVVUG00000007595 ENSVVUG00000007591 FCGR1A (ENSVVUG00000007556) ENSVVUG00000007552 HJV (ENSVVUG00000007529) TXNIP (ENSVVUG00000007524) POLR3GL (ENSVVUG00000007497) ANKRD34A (ENSVVUG00000007494) LIX1L (ENSVVUG00000007490) RBM8A (ENSVVUG00000007486) PEX11B (ENSVVUG00000007477) ITGA10 (ENSVVUG00000007459) ANKRD35 (ENSVVUG00000007450) Caniformia_b ANCESTRAL SPECIES 35 ENSGT01050000244841.A.a.b ENSGT00730000111185 ENSGT00390000005869.a ENSGT00390000012355.B.b ENSGT01060000248645 ENSGT00940000158522 ENSGT00950000183112.b.b ENSGT00420000029746.f ENSGT00950000183190.a.b.a.b ENSGT01050000244808.A.b.b.a ENSGT01100000263506.a.e.b #14 ENSGT01100000263559.B #32 ENSGT01060000248528.b.jh.a.b ENSGT01100000263506.a.e.a.a.a.a.b.a #14 ENSGT00940000156302 ENSGT01100000263559.A.f #25 ENSGT01100000263575.B.u ENSGT00940000153118.db.a.a.b.a.a ENSGT00940000153118.db.a.a.b.a.b ENSGT00510000048165 ENSGT00950000182940.b.a.b ENSGT00870000136537 ENSGT00940000160276 ENSGT00940000159172 ENSGT00550000075028 ENSGT00530000063760.b ENSGT00950000182907.a.a ENSGT00940000156893 ENSGT00390000002049.c.a ENSGT00390000003103 ENSGT00390000018360 Mustelinae ANCESTRAL SPECIES 255 ENSGT01100000263575.B.u ENSGT00940000156302 ENSGT01100000263559.A.f #25 American mink DUPLICATION American mink MODERN SPECIES 530 ENSNVIG00000003483 ENSNVIG00000003455 ENSNVIG00000003436 ENSNVIG00000003430 H2BC18 (ENSNVIG00000003417) #14 ENSNVIG00000003413 #32 H4 (ENSNVIG00000003408) ENSNVIG00000003399 #25 ENSNVIG00000003397 ENSNVIG00000003349 ENSNVIG00000003286 ENSNVIG00000003279 ENSNVIG00000003275 #25 ENSNVIG00000003258 H2AC20 (ENSNVIG00000003252) H2AC21 (ENSNVIG00000003251) BOLA1 (ENSNVIG00000003246) SV2A (ENSNVIG00000003188) SF3B4 (ENSNVIG00000003168) MTMR11 (ENSNVIG00000003067) OTUD7B (ENSNVIG00000003037) VPS45 (ENSNVIG00000002966) PLEKHO1 (ENSNVIG00000002956) ENSNVIG00000002941 American mink MODERN SPECIES 530 PLEKHO1 (ENSNVIG00000002956) VPS45 (ENSNVIG00000002966) OTUD7B (ENSNVIG00000003037) MTMR11 (ENSNVIG00000003067) SF3B4 (ENSNVIG00000003168) SV2A (ENSNVIG00000003188) BOLA1 (ENSNVIG00000003246) H2AC21 (ENSNVIG00000003251) H2AC20 (ENSNVIG00000003252) ENSNVIG00000003258 ENSNVIG00000003275 #25 ENSNVIG00000003279 ENSNVIG00000003286 ENSNVIG00000003349 ENSNVIG00000003397 ENSNVIG00000003399 #25 H4 (ENSNVIG00000003408) ENSNVIG00000003413 #32 H2BC18 (ENSNVIG00000003417) #14 ENSNVIG00000003430 ENSNVIG00000003436 ENSNVIG00000003455 ENSNVIG00000003483 Laurasiatheria_c ANCESTRAL SPECIES ENSGT00530000063760.b ENSGT00550000075028 ENSGT00940000159172 ENSGT00940000160276 ENSGT00870000136537 ENSGT00950000182940.b.a.b ENSGT00510000048165 ENSGT00940000153118.db.a.a.b.a.b ENSGT00940000153118.db.a.a.b.a.a ENSGT01100000263506.a.e.a.b #14 ENSGT01100000263559.B #32 ENSGT01100000263575.A ENSGT00940000156302 ENSGT01100000263575.B.u ENSGT00940000153125.D.a.a ENSGT01100000263559.A.f #25 ENSGT01100000263506.a.e.b #14 ENSGT01050000244808.A.b.b.a ENSGT00950000183190.a.b.a.b ENSGT00420000029746.f ENSGT00950000183112.b.b ENSGT00940000158522 ENSGT01060000248645 ENSGT00390000012355.B.b ENSGT00390000005869.a ENSGT00730000111185 ENSGT01050000244841.A.a.b ENSGT00390000014273.b ENSGT00940000158423 ENSGT00530000063074.a ENSGT01030000234539.a.a.b.a.a Equus ANCESTRAL SPECIES 3 ENSGT00940000153118.db.a.a.b.a.a ENSGT01100000263559.B #32 ENSGT01100000263514.A.e.a.a ENSGT00940000155501.a.b ENSGT01060000248528.b.kh.yb.d ENSGT01060000248528.b.jh.b ENSGT01100000263567.a.a #35 ENSGT00940000160426 ENSGT01100000263506.a.e.a.a.a.b.a.a.a #14 ENSGT01060000248528.b.jh.a.b ENSGT00940000163036.g.a.a.a ENSGT01100000263575.A ENSGT00940000156302 ENSGT01100000263575.B.u ENSGT00940000153092.a.b.e.a.a ENSGT01100000263559.A.f #25 ENSGT01100000263506.a.e.b #14 ENSGT00420000029746.f ENSGT00950000183190.a.b.a.b ENSGT01050000244808.A.b.b.a ENSGT00950000183112.b.b ENSGT00940000158522 ENSGT01060000248645 ENSGT00390000012355.B.b ENSGT00390000005869.a ENSGT00730000111185 ENSGT01050000244841.A.a.b ENSGT00390000014273.b ENSGT00940000158423 ENSGT00530000063074.a ENSGT01030000234539.a.a.b.a.a Horse MODERN SPECIES 26 ANP32E (ENSECAG00000008718) ENSECAG00000057654 ENSECAG00000044747 PLEKHO1 (ENSECAG00000059570) VPS45 (ENSECAG00000013816) OTUD7B (ENSECAG00000019449) MTMR11 (ENSECAG00000023282) SV2A (ENSECAG00000007414) BOLA1 (ENSECAG00000034826) H2AC20 (ENSECAG00000049520) H2BC20 (ENSECAG00000060054) ENSECAG00000054279 H2AC19 (ENSECAG00000043631) H2BC20 (ENSECAG00000053797) H2BC19 (ENSECAG00000043501) ENSECAG00000046705 #25 H2BC18 (ENSECAG00000044618) #14 ENSECAG00000037030 ENSECAG00000014464 ENSECAG00000013628 ENSECAG00000013941 ENSECAG00000037385 POLR3GL (ENSECAG00000015900) HJV (ENSECAG00000028996) TXNIP (ENSECAG00000028144) ANKRD34A (ENSECAG00000002458) LIX1L (ENSECAG00000020654) ENSECAG00000046198 RBM8A (ENSECAG00000022024) GNRHR2 (ENSECAG00000023497) PEX11B (ENSECAG00000002265) Chiroptera ANCESTRAL SPECIES 20 ENSGT01060000248528.b.kh.yb.d ENSGT00940000155501.a.b ENSGT01100000263514.A.e.a.b.a.b.a.a.a.b.a.a.a.b ENSGT00940000153125.D.a.a ENSGT01100000263575.B.u ENSGT00940000153125.E.c.a.a ENSGT01100000263506.a.e.a.a.a.b.a.a.b.a.b.a.a.a #14 ENSGT00940000153125.E.c.a.b.b ENSGT00940000162950 ENSGT01100000263514.A.e.a.b.a.b.a.a.a.a ENSGT01060000248528.b.kh.yb.c.a ENSGT01100000263514.A.e.a.b.a.b.a.b ENSGT00940000153125.E.c.b ENSGT01100000263506.a.e.a.a.a.b.a.a.a #14 ENSGT01060000248528.b.jh.b ENSGT01100000263559.A.f #25 ENSGT01100000263506.a.e.b #14 ENSGT01050000244808.A.b.b.a ENSGT00950000183112.b.b ENSGT00940000158522 ENSGT01060000248645 ENSGT00390000012355.B.b ENSGT00390000005869.a ENSGT00730000111185 ENSGT00390000014273.b ENSGT00940000158423 ENSGT00530000063074.a ENSGT01030000234539.a.a.b.a.a ENSGT00390000013847 ENSGT00390000002799 ENSGT00940000157203 Microchiroptera ANCESTRAL SPECIES 21 ENSGT00940000160276 ENSGT00870000136537 ENSGT00950000182940.b.a.b ENSGT00510000048165 ENSGT00940000153118.db.a.a.b.a.b ENSGT00940000153118.db.a.a.b.a.a ENSGT01100000263506.a.e.a.b #14 ENSGT01100000263514.A.e.a.b.a.b.a.a.b ENSGT01060000248528.b.jh.b ENSGT01060000248528.b.kh.yb.d ENSGT00940000155501.a.b ENSGT01100000263514.A.e.a.b.a.b.a.a.a.b.a.a.a.b ENSGT00940000153125.D.a.a ENSGT01100000263575.B.u ENSGT00940000156302 ENSGT01100000263559.A.f #25 ENSGT01100000263506.a.e.b #14 ENSGT01050000244808.A.b.b.a ENSGT00950000183112.b.b ENSGT00940000158522 ENSGT01060000248645 ENSGT00390000012355.B.b ENSGT00390000005869.a ENSGT00730000111185 ENSGT00390000014273.b ENSGT00940000158423 ENSGT00530000063074.a ENSGT01030000234539.a.a.b.a.a ENSGT00390000013847 ENSGT00390000002799 ENSGT00940000157203 Greater horseshoe bat DUPLICATION Greater horseshoe bat MODERN SPECIES 14 CA14 (ENSRFEG00010020216) ANP32E (ENSRFEG00010020103) PLEKHO1 (ENSRFEG00010020048) VPS45 (ENSRFEG00010019952) OTUD7B (ENSRFEG00010019911) MTMR11 (ENSRFEG00010019669) SF3B4 (ENSRFEG00010019596) SV2A (ENSRFEG00010019515) BOLA1 (ENSRFEG00010019489) ENSRFEG00010019479 H2AC21 (ENSRFEG00010019466) H2AC20 (ENSRFEG00010019447) ENSRFEG00010019413 #14 ENSRFEG00010019403 ENSRFEG00010019396 ENSRFEG00010019380 #25 ENSRFEG00010019363 ENSRFEG00010019351 ENSRFEG00010019339 #25 H2BC18 (ENSRFEG00010019313) #14 FCGR1A (ENSRFEG00010019271) HJV (ENSRFEG00010019205) TXNIP (ENSRFEG00010019128) POLR3GL (ENSRFEG00010019091) ANKRD34A (ENSRFEG00010019075) LIX1L (ENSRFEG00010019031) RBM8A (ENSRFEG00010018987) PEX11B (ENSRFEG00010018908) ITGA10 (ENSRFEG00010018433) ANKRD35 (ENSRFEG00010018199) PIAS3 (ENSRFEG00010018138) Greater horseshoe bat MODERN SPECIES 14 VPS45 (ENSRFEG00010019952) OTUD7B (ENSRFEG00010019911) MTMR11 (ENSRFEG00010019669) SF3B4 (ENSRFEG00010019596) SV2A (ENSRFEG00010019515) BOLA1 (ENSRFEG00010019489) ENSRFEG00010019479 H2AC21 (ENSRFEG00010019466) H2AC20 (ENSRFEG00010019447) ENSRFEG00010019413 #14 ENSRFEG00010019403 ENSRFEG00010019396 ENSRFEG00010019380 #25 ENSRFEG00010019363 ENSRFEG00010019351 ENSRFEG00010019339 #25 H2BC18 (ENSRFEG00010019313) #14 FCGR1A (ENSRFEG00010019271) HJV (ENSRFEG00010019205) TXNIP (ENSRFEG00010019128) POLR3GL (ENSRFEG00010019091) ANKRD34A (ENSRFEG00010019075) LIX1L (ENSRFEG00010019031) RBM8A (ENSRFEG00010018987) PEX11B (ENSRFEG00010018908) ITGA10 (ENSRFEG00010018433) ANKRD35 (ENSRFEG00010018199) PIAS3 (ENSRFEG00010018138) NUDT17 (ENSRFEG00010018121) POLR3C (ENSRFEG00010018066) RNF115 (ENSRFEG00010018030) Artiodactyla ANCESTRAL SPECIES 15 ENSGT00940000163521 ENSGT00950000182890.D.c.a.b ENSGT00940000161576 ENSGT00940000163165 ENSGT00940000165662 ENSGT00940000163388 ENSGT00940000163486 ENSGT01100000263486.a.b.a.a.a.a.a.b.a.b.b.b ENSGT01100000263486.a.b.a.a.a.a.a.b.a.b.b.a ENSGT01100000263486.a.b.a.b.a ENSGT01100000263486.a.b.b ENSGT01100000263486.a.a ENSGT01100000263548.a.b.b ENSGT01100000263575.B.u ENSGT00940000156302 ENSGT01100000263559.A.f #25 ENSGT00940000153125.D.a.b ENSGT01100000263506.a.e.a.a.a.b.a.a.b.a.a #14 ENSGT00940000163525 ENSGT01060000248528.b.kh.yb ENSGT00940000155501.a.b ENSGT01100000263514.A.e.a.a ENSGT00940000153092.a.a.c.a.a ENSGT01100000263506.a.e.a.a.a.b.a.a.b.a.b.a.a.a #14 ENSGT00940000162941 ENSGT00940000153104.e.b.a.b ENSGT00940000153104.e.a.a.a.a.b ENSGT00940000153253.b.a.h ENSGT00940000160281 ENSGT00940000153125.C ENSGT01100000263506.a.e.a.a.a.a.b.b #14 Suina ANCESTRAL SPECIES 8 ENSGT00950000182907.a.a ENSGT00530000063760.b ENSGT00550000075028 ENSGT00940000159172 ENSGT00940000160276 ENSGT00870000136537 ENSGT00950000182940.b.a.b ENSGT00510000048165 ENSGT00940000153118.db.a.a.b.a.b ENSGT00940000153118.db.a.a.b.a.a ENSGT01100000263575.B.u ENSGT01100000263559.B #32 ENSGT00940000153118.db.b ENSGT01100000263575.A ENSGT00940000156302 ENSGT01100000263559.A.f #25 ENSGT00940000163082 ENSGT01100000263517.b.d.m.a.a.b ENSGT01060000248528.b.kh.yb ENSGT01100000263474.a.b.a.d #36 ENSGT00940000163525 ENSGT00940000153092.a.a.d ENSGT01100000263506.a.f.b #14 ENSGT00940000153092.a.b.f ENSGT00940000155501.a.a ENSGT01100000263474.a.b.b.e.a.a.a.a ##36 ENSGT01100000263506.a.e.a.a.a.a.b.a #14 ENSGT01100000263514.A.e.a.b.a.b.a.a.b ENSGT00940000160426 ENSGT00940000153092.a.a.c.a.a ENSGT01100000263514.A.e.a.b.a.b.a.a.a.b.a.b Pig MODERN SPECIES 12 PLEKHO1 (ENSSSCG00000022784) VPS45 (ENSSSCG00000006661) OTUD7B (ENSSSCG00000006663) MTMR11 (ENSSSCG00000006664) SF3B4 (ENSSSCG00000006665) SV2A (ENSSSCG00000006666) BOLA1 (ENSSSCG00000006667) H2AC21 (ENSSSCG00000063420) H2AC20 (ENSSSCG00000034598) ENSSSCG00000047083 ENSSSCG00000053902 #32 ENSSSCG00000057447 H2BC21 (ENSSSCG00000060759) ENSSSCG00000055629 ENSSSCG00000057512 H3C14 (ENSSSCG00000063270) #25 ENSSSCG00000059426 H2BC18 (ENSSSCG00000062160) #14 FCGR1A (ENSSSCG00000006678) ENSSSCG00000006679 HJV (ENSSSCG00000035429) TXNIP (ENSSSCG00000031262) ENSSSCG00000006682 ANKRD34A (ENSSSCG00000037823) LIX1L (ENSSSCG00000026502) RBM8A (ENSSSCG00000028509) ENSSSCG00000006685 PEX11B (ENSSSCG00000056541) ITGA10 (ENSSSCG00000006687) ANKRD35 (ENSSSCG00000006688) PIAS3 (ENSSSCG00000006689) Artiodactyla_a ANCESTRAL SPECIES ENSGT00940000159172 ENSGT00940000160276 ENSGT00870000136537 ENSGT00950000182940.b.a.b ENSGT00510000048165 ENSGT00940000153118.db.a.a.b.a.b ENSGT00940000153118.db.a.a.b.a.a ENSGT01100000263575.B.u ENSGT01100000263506.a.e.a.a.a.a.a #14 ENSGT01100000263575.B.t.a.a.a ENSGT00940000156302 ENSGT01100000263559.B #32 ENSGT01100000263569.a.b.b ENSGT00940000164494 ENSGT01060000248528.a.b.a.a.a.b ENSGT01100000263559.A.f #25 ENSGT01100000263506.a.e.b #14 ENSGT01050000244808.A.b.b.a ENSGT00950000183190.a.b.a.b ENSGT00420000029746.f ENSGT00950000183112.b.b ENSGT00940000158522 ENSGT01060000248645 ENSGT00390000012355.B.b ENSGT00390000005869.a ENSGT00730000111185 ENSGT01050000244841.A.a.b ENSGT00390000014273.b ENSGT00940000158423 ENSGT00530000063074.a ENSGT01030000234539.a.a.b.a.a Camelidae ANCESTRAL SPECIES 6 ENSGT00390000003103 ENSGT00390000002049.c.a ENSGT00940000156893 ENSGT00950000182907.a.a ENSGT00530000063760.b ENSGT00550000075028 ENSGT00940000159172 ENSGT00940000160276 ENSGT00870000136537 ENSGT00950000182940.b.a.b ENSGT00510000048165 ENSGT00940000153118.db.a.a.b.a.b ENSGT00940000153118.db.a.a.b.a.a ENSGT01100000263506.a.e.a.a.a.a.a.b #14 ENSGT01100000263559.B #32 ENSGT01100000263559.A.f #25 ENSGT01100000263506.a.e.b #14 ENSGT01050000244808.A.b.b.a ENSGT00950000183190.a.b.a.b ENSGT00420000029746.f ENSGT00950000183112.b.b ENSGT00940000158522 ENSGT01060000248645 ENSGT00390000012355.B.b ENSGT00390000005869.a ENSGT00730000111185 ENSGT00910000145379 ENSGT00940000158423 ENSGT00530000063074.a ENSGT01030000234539.a.a.b.a.a ENSGT00390000013847 Alpaca MODERN SPECIES 5349 ENSVPAG00000015436 H3-7 (ENSVPAG00000015477) #25 H2BC18 (ENSVPAG00000015447) #14 Artiodactyla_b ANCESTRAL SPECIES ENSGT01060000248645 ENSGT00940000158522 ENSGT00950000183112.b.b ENSGT00420000029746.f ENSGT00950000183190.a.b.a.b ENSGT01050000244808.A.b.b.a ENSGT01100000263506.a.e.b #14 ENSGT01100000263514.A.e.a.a ENSGT01060000248528.b.jh.b ENSGT01100000263575.B.t.a.a.a ENSGT00940000156302 ENSGT01100000263559.B #32 ENSGT01100000263569.a.b.b ENSGT00940000164494 ENSGT01060000248528.a.b.a.a.a.b ENSGT01100000263559.A.f #25 ENSGT01100000263575.B.u ENSGT00940000153118.db.a.a.b.a.a ENSGT00940000153118.db.a.a.b.a.b ENSGT00510000048165 ENSGT00950000182940.b.a.b ENSGT00870000136537 ENSGT00940000160276 ENSGT00940000159172 ENSGT00550000075028 ENSGT00530000063760.b ENSGT00950000182907.a.a ENSGT00940000156893 ENSGT00390000002049.c.a ENSGT00390000003103 ENSGT00390000018360 Cetacea ANCESTRAL SPECIES ENSGT00940000159172 ENSGT00940000160276 ENSGT00870000136537 ENSGT00950000182940.b.a.b ENSGT00510000048165 ENSGT00940000153118.db.a.a.b.a.b ENSGT00940000153118.db.a.a.b.a.a ENSGT01100000263575.B.u ENSGT01100000263559.B #32 ENSGT00940000156302.m.b ENSGT01100000263575.B.t.a.a.a.a.b ENSGT01100000263575.B.t.a.a.a.a.a ENSGT00940000156302.m.a ENSGT01100000263506.a.e.a.a.a.a.a #14 ENSGT01060000248528.b.jh.b ENSGT01100000263559.A.f #25 ENSGT01100000263506.a.e.b #14 ENSGT00950000183190.a.b.a.b ENSGT00420000029746.f ENSGT00950000183112.b.b ENSGT00940000158522 ENSGT01060000248645 ENSGT00390000012355.B.b ENSGT00390000005869.a ENSGT00730000111185 ENSGT01050000244841.A.a.b ENSGT00390000014273.b ENSGT00940000158423 ENSGT00530000063074.a ENSGT01030000234539.a.a.b.a.a ENSGT00390000013847 Odontoceti ANCESTRAL SPECIES ENSGT00530000063760.b ENSGT00550000075028 ENSGT00940000159172 ENSGT00940000160276 ENSGT00870000136537 ENSGT00950000182940.b.a.b ENSGT00510000048165 ENSGT00940000153118.db.a.a.b.a.b ENSGT00940000153118.db.a.a.b.a.a ENSGT01100000263575.B.u ENSGT01100000263559.B #32 ENSGT00940000156302.m.a ENSGT01100000263575.B.t.a.a.a.a.a ENSGT01100000263575.B.t.a.a.a.a.b ENSGT00940000156302.m.b ENSGT01100000263559.A.f #25 ENSGT01100000263575.B.t.a.a.b ENSGT01100000263506.a.e.b #14 ENSGT00950000183190.a.b.a.b ENSGT00420000029746.f ENSGT00950000183112.b.b ENSGT00940000158522 ENSGT01060000248645 ENSGT00390000012355.B.b ENSGT00390000005869.a ENSGT00730000111185 ENSGT01050000244841.A.a.b ENSGT00390000014273.b ENSGT00940000158423 ENSGT00530000063074.a ENSGT01030000234539.a.a.b.a.a Sperm whale MODERN SPECIES 15 PEX11B (ENSPCTG00005012430) RBM8A (ENSPCTG00005012300) LIX1L (ENSPCTG00005012257) ENSPCTG00005012232 ENSPCTG00005012215 POLR3GL (ENSPCTG00005012074) TXNIP (ENSPCTG00005011915) HJV (ENSPCTG00005011809) ENSPCTG00005011661 ENSPCTG00005011561 ENSPCTG00005011537 #32 ENSPCTG00005011520 ENSPCTG00005011505 ENSPCTG00005011490 ENSPCTG00005011469 ENSPCTG00005011455 #25 ENSPCTG00005011442 H2AC20 (ENSPCTG00005011425) H2AC21 (ENSPCTG00005011410) BOLA1 (ENSPCTG00005011392) SV2A (ENSPCTG00005011188) SF3B4 (ENSPCTG00005011142) MTMR11 (ENSPCTG00005010793) OTUD7B (ENSPCTG00005010704) VPS45 (ENSPCTG00005010502) PLEKHO1 (ENSPCTG00005010430) ANP32E (ENSPCTG00005010280) CA14 (ENSPCTG00005010130) APH1A (ENSPCTG00005010018) C4H1orf54 (ENSPCTG00005009937) CIART (ENSPCTG00005009880) Odontoceti_a ANCESTRAL SPECIES ENSGT00530000063760.b ENSGT00550000075028 ENSGT00940000159172 ENSGT00940000160276 ENSGT00870000136537 ENSGT00950000182940.b.a.b ENSGT00510000048165 ENSGT00940000153118.db.a.a.b.a.b ENSGT00940000153118.db.a.a.b.a.a ENSGT01100000263575.B.u ENSGT01100000263559.B #32 ENSGT00940000156302.m.a.b ENSGT01100000263575.B.t.a.a.a.a.a ENSGT01100000263575.B.t.a.a.a.a.b ENSGT00940000156302.m.b ENSGT01100000263559.A.f #25 ENSGT01100000263506.a.e.b #14 ENSGT00950000183190.a.b.a.b ENSGT00420000029746.f ENSGT00950000183112.b.b ENSGT00940000158522 ENSGT01060000248645 ENSGT00390000012355.B.b ENSGT00390000005869.a ENSGT00730000111185 ENSGT01050000244841.A.a.b ENSGT00390000014273.b ENSGT00940000158423 ENSGT00530000063074.a ENSGT01030000234539.a.a.b.a.a ENSGT00390000013847 Dolphin MODERN SPECIES 2133 OTUD7B (ENSTTRG00000005256) MTMR11 (ENSTTRG00000005231) SF3B4 (ENSTTRG00000005217) SV2A (ENSTTRG00000005189) BOLA1 (ENSTTRG00000005176) H2AC21 (ENSTTRG00000005162) H2AC20 (ENSTTRG00000005146) H2BC21 (ENSTTRG00000005143) H3C14 (ENSTTRG00000005140) #32 ENSTTRG00000005136 ENSTTRG00000005132 ENSTTRG00000005120 H3-7 (ENSTTRG00000005108) #25 H2BC18 (ENSTTRG00000005097) #14 Odontoceti_b ANCESTRAL SPECIES ENSGT00390000014273.b ENSGT00730000111185 ENSGT00390000005869.a ENSGT00390000012355.B.b ENSGT01060000248645 ENSGT00940000158522 ENSGT00950000183112.b.b ENSGT00420000029746.f ENSGT00950000183190.a.b.a.b ENSGT01100000263506.a.e.b #14 ENSGT01100000263559.B #32 ENSGT00940000156302.m.a.b ENSGT01100000263575.B.t.a.a.a.a.a ENSGT01100000263575.B.t.a.a.a.a.b ENSGT00940000156302.m.b ENSGT01100000263559.A.f #25 ENSGT01100000263575.B.u ENSGT00940000153118.db.a.a.b.a.a ENSGT00940000153118.db.a.a.b.a.b ENSGT00510000048165 ENSGT00950000182940.b.a.b ENSGT00870000136537 ENSGT00940000160276 ENSGT00940000159172 ENSGT00550000075028 ENSGT00530000063760.b ENSGT00950000182907.a.a ENSGT00940000156893 ENSGT00390000002049.c.a ENSGT00390000003103 ENSGT00390000018360 Monodontidae ANCESTRAL SPECIES ENSGT00530000063074.a ENSGT00940000158423 ENSGT00390000014273.b ENSGT00730000111185 ENSGT00390000005869.a ENSGT00390000012355.B.b ENSGT01060000248645 ENSGT00940000158522 ENSGT00950000183112.b.b ENSGT00420000029746.f ENSGT00950000183190.a.b.a.b ENSGT01100000263506.a.e.b #14 ENSGT01100000263559.B #32 ENSGT01100000263506.a.e.a.a.a.a.a #14 ENSGT01060000248528.b.jh.b ENSGT01100000263559.A.f #25 ENSGT01100000263575.B.t.a.a.b ENSGT00940000153118.db.a.a.b.a.a ENSGT00940000153118.db.a.a.b.a.b ENSGT00510000048165 ENSGT00950000182940.b.a.b ENSGT00870000136537 ENSGT00940000160276 ENSGT00940000159172 ENSGT00550000075028.w.a ENSGT00530000063760.b ENSGT00950000182907.a.a ENSGT00940000156893 ENSGT00390000002049.c.a ENSGT00390000003103 ENSGT00390000018360 Beluga whale MODERN SPECIES 99 ENSDLEG00000009879 CA14 (ENSDLEG00000009908) ANP32E (ENSDLEG00000009954) PLEKHO1 (ENSDLEG00000009972) VPS45 (ENSDLEG00000009999) ENSDLEG00000010020 OTUD7B (ENSDLEG00000010038) MTMR11 (ENSDLEG00000010078) SF3B4 (ENSDLEG00000010135) SV2A (ENSDLEG00000010159) BOLA1 (ENSDLEG00000010185) ENSDLEG00000010198 H2AC21 (ENSDLEG00000010209) ENSDLEG00000010220 #14 ENSDLEG00000010243 H3-7 (ENSDLEG00000010255) #25 H2BC18 (ENSDLEG00000010273) #14 ENSDLEG00000010280 ENSDLEG00000010319 Narwhal DUPLICATION Narwhal MODERN SPECIES 304 ANKRD35 (ENSMMNG00015001213) ITGA10 (ENSMMNG00015001059) PEX11B (ENSMMNG00015000972) RBM8A (ENSMMNG00015000918) LIX1L (ENSMMNG00015000890) ANKRD34A (ENSMMNG00015000874) ENSMMNG00015000840 TXNIP (ENSMMNG00015000791) HJV (ENSMMNG00015000764) ENSMMNG00015000699 ENSMMNG00015000669 H2BC18 (ENSMMNG00015000651) #14 H3C13 (ENSMMNG00015000641) #32 ENSMMNG00015000624 ENSMMNG00015000609 #25 ENSMMNG00015000597 #25 ENSMMNG00015000589 H2AC20 (ENSMMNG00015000583) H2AC21 (ENSMMNG00015000574) BOLA1 (ENSMMNG00015000565) SV2A (ENSMMNG00015000538) SF3B4 (ENSMMNG00015000508) MTMR11 (ENSMMNG00015000420) OTUD7B (ENSMMNG00015000357) ENSMMNG00015000303 PLEKHO1 (ENSMMNG00015000265) ANP32E (ENSMMNG00015000229) CA14 (ENSMMNG00015000189) APH1A (ENSMMNG00015000151) C1orf54 (ENSMMNG00015000118) CIART (ENSMMNG00015000077) Narwhal MODERN SPECIES 304 C1orf54 (ENSMMNG00015000118) APH1A (ENSMMNG00015000151) CA14 (ENSMMNG00015000189) ANP32E (ENSMMNG00015000229) PLEKHO1 (ENSMMNG00015000265) ENSMMNG00015000303 OTUD7B (ENSMMNG00015000357) MTMR11 (ENSMMNG00015000420) SF3B4 (ENSMMNG00015000508) SV2A (ENSMMNG00015000538) BOLA1 (ENSMMNG00015000565) H2AC21 (ENSMMNG00015000574) H2AC20 (ENSMMNG00015000583) ENSMMNG00015000589 ENSMMNG00015000597 #25 ENSMMNG00015000609 #25 ENSMMNG00015000624 H3C13 (ENSMMNG00015000641) #32 H2BC18 (ENSMMNG00015000651) #14 ENSMMNG00015000669 ENSMMNG00015000699 HJV (ENSMMNG00015000764) TXNIP (ENSMMNG00015000791) ENSMMNG00015000840 ANKRD34A (ENSMMNG00015000874) LIX1L (ENSMMNG00015000890) RBM8A (ENSMMNG00015000918) PEX11B (ENSMMNG00015000972) ITGA10 (ENSMMNG00015001059) ANKRD35 (ENSMMNG00015001213) PIAS3 (ENSMMNG00015001315) Vaquita DUPLICATION Vaquita MODERN SPECIES VPS45 (ENSPSNG00000001453) OTUD7B (ENSPSNG00000001389) MTMR11 (ENSPSNG00000001321) SF3B4 (ENSPSNG00000001286) SV2A (ENSPSNG00000001263) BOLA1 (ENSPSNG00000001237) H2AC21 (ENSPSNG00000001218) H2AC20 (ENSPSNG00000001208) H2BC21 (ENSPSNG00000001199) ENSPSNG00000001182 #25 ENSPSNG00000001168 ENSPSNG00000001160 ENSPSNG00000001148 ENSPSNG00000001132 ENSPSNG00000001122 #32 H3-7 (ENSPSNG00000001054) #25 H2BC18 (ENSPSNG00000001038) #14 ENSPSNG00000001015 ENSPSNG00000000971 HJV (ENSPSNG00000000911) TXNIP (ENSPSNG00000000878) POLR3GL (ENSPSNG00000000850) ANKRD34A (ENSPSNG00000000834) LIX1L (ENSPSNG00000000812) ENSPSNG00000000786 PEX11B (ENSPSNG00000000744) ITGA10 (ENSPSNG00000000636) ANKRD35 (ENSPSNG00000000537) PIAS3 (ENSPSNG00000000478) NUDT17 (ENSPSNG00000000422) POLR3C (ENSPSNG00000000389) Vaquita MODERN SPECIES ENSPSNG00000000786 LIX1L (ENSPSNG00000000812) ANKRD34A (ENSPSNG00000000834) POLR3GL (ENSPSNG00000000850) TXNIP (ENSPSNG00000000878) HJV (ENSPSNG00000000911) ENSPSNG00000000971 ENSPSNG00000001015 H2BC18 (ENSPSNG00000001038) #14 H3-7 (ENSPSNG00000001054) #25 ENSPSNG00000001122 #32 ENSPSNG00000001132 ENSPSNG00000001148 ENSPSNG00000001160 ENSPSNG00000001168 ENSPSNG00000001182 #25 H2BC21 (ENSPSNG00000001199) H2AC20 (ENSPSNG00000001208) H2AC21 (ENSPSNG00000001218) BOLA1 (ENSPSNG00000001237) SV2A (ENSPSNG00000001263) SF3B4 (ENSPSNG00000001286) MTMR11 (ENSPSNG00000001321) OTUD7B (ENSPSNG00000001389) VPS45 (ENSPSNG00000001453) PLEKHO1 (ENSPSNG00000001496) ANP32E (ENSPSNG00000001573) CA14 (ENSPSNG00000001634) ENSPSNG00000001681 CIART (ENSPSNG00000001759) MRPS21 (ENSPSNG00000001805) Pecora ANCESTRAL SPECIES 2 ENSGT00940000158423 ENSGT00390000014273.b ENSGT01050000244841.A.a.b ENSGT00730000111185 ENSGT00390000005869.a ENSGT00390000012355.B.b ENSGT01060000248645 ENSGT00940000158522 ENSGT00950000183112.b.b ENSGT00420000029746.f ENSGT00950000183190.a.b.a.b ENSGT01050000244808.A.b.b.a ENSGT01100000263506.a.e.b #14 ENSGT01100000263474.a.b.a.d #36 ENSGT00940000156302 ENSGT01100000263559.A.f #25 ENSGT01100000263575.B.u ENSGT00940000153118.db.a.a.b.a.a ENSGT00940000153118.db.a.a.b.a.b ENSGT00510000048165 ENSGT00950000182940.b.a.b ENSGT00870000136537 ENSGT00940000160276 ENSGT00940000159172 ENSGT00550000075028 ENSGT00530000063760.b ENSGT00950000182907.a.a ENSGT00940000156893 ENSGT00390000002049.c.a ENSGT00390000003103 ENSGT00390000018360 Yarkand deer MODERN SPECIES 12 APH1A (ENSCHYG00000012752) CA14 (ENSCHYG00000012847) ANP32E (ENSCHYG00000012932) ENSCHYG00000013481 VPS45 (ENSCHYG00000013592) OTUD7B (ENSCHYG00000014204) ENSCHYG00000014343 MTMR11 (ENSCHYG00000014428) ENSCHYG00000014732 SV2A (ENSCHYG00000014801) BOLA1 (ENSCHYG00000014998) H2AC21 (ENSCHYG00000015023) H2AC20 (ENSCHYG00000015051) H2BC21 (ENSCHYG00000015088) ENSCHYG00000015117 H3-7 (ENSCHYG00000015151) #25 H2BC18 (ENSCHYG00000015177) #14 ENSCHYG00000015246 FCGR1A (ENSCHYG00000015523) ENSCHYG00000015606 HJV (ENSCHYG00000015634) TXNIP (ENSCHYG00000015719) POLR3GL (ENSCHYG00000015898) ANKRD34A (ENSCHYG00000015933) LIX1L (ENSCHYG00000015993) RBM8A (ENSCHYG00000016090) PEX11B (ENSCHYG00000004579) ITGA10 (ENSCHYG00000004850) ANKRD35 (ENSCHYG00000004968) PIAS3 (ENSCHYG00000005027) NUDT17 (ENSCHYG00000005077) Percora_a ANCESTRAL SPECIES 1 ENSGT00940000158423 ENSGT00390000014273.b ENSGT01050000244841.A.a.b ENSGT00730000111185 ENSGT00390000005869.a ENSGT00390000012355.B.b ENSGT01060000248645 ENSGT00940000158522 ENSGT00950000183112.b.b ENSGT00420000029746.f ENSGT00950000183190.a.b.a.b ENSGT01050000244808.A.b.b.a ENSGT01100000263506.a.e.b #14 ENSGT01100000263474.a.b.a.d #36 ENSGT00940000156302 ENSGT01100000263559.A.f #25 ENSGT01100000263575.B.u ENSGT00940000153118.db.a.a.b.a.a ENSGT00940000153118.db.a.a.b.a.b ENSGT00510000048165 ENSGT00950000182940.b.a.b ENSGT00870000136537 ENSGT00940000160276 ENSGT00940000159172 ENSGT00550000075028 ENSGT00530000063760.b ENSGT00950000182907.a.a ENSGT00940000156893 ENSGT00390000002049.c.a ENSGT00390000003103 ENSGT00390000018360 Siberian musk deer DUPLICATION Siberian musk deer MODERN SPECIES 247 ANP32E (ENSMMSG00000020532) PLEKHO1 (ENSMMSG00000020759) VPS45 (ENSMMSG00000020801) OTUD7B (ENSMMSG00000020949) MTMR11 (ENSMMSG00000020972) SF3B4 (ENSMMSG00000021043) SV2A (ENSMMSG00000021080) BOLA1 (ENSMMSG00000021162) H2AC21 (ENSMMSG00000021172) H2AC20 (ENSMMSG00000021185) H2BC21 (ENSMMSG00000021195) ENSMMSG00000021208 #25 ENSMMSG00000013230 ENSMMSG00000013235 #14 ENSMMSG00000013242 H3-7 (ENSMMSG00000013251) #25 H2BC18 (ENSMMSG00000013260) #14 ENSMMSG00000013270 ENSMMSG00000013282 ENSMMSG00000013290 ENSMMSG00000013298 ENSMMSG00000013310 Siberian musk deer MODERN SPECIES 247 ENSMMSG00000013310 ENSMMSG00000013298 ENSMMSG00000013290 ENSMMSG00000013282 ENSMMSG00000013270 H2BC18 (ENSMMSG00000013260) #14 H3-7 (ENSMMSG00000013251) #25 ENSMMSG00000013242 ENSMMSG00000013235 #14 ENSMMSG00000013230 ENSMMSG00000021208 #25 H2BC21 (ENSMMSG00000021195) H2AC20 (ENSMMSG00000021185) H2AC21 (ENSMMSG00000021172) BOLA1 (ENSMMSG00000021162) SV2A (ENSMMSG00000021080) SF3B4 (ENSMMSG00000021043) MTMR11 (ENSMMSG00000020972) OTUD7B (ENSMMSG00000020949) VPS45 (ENSMMSG00000020801) PLEKHO1 (ENSMMSG00000020759) ANP32E (ENSMMSG00000020532) CA14 (ENSMMSG00000020490) APH1A (ENSMMSG00000020404) C1orf54 (ENSMMSG00000020377) CIART (ENSMMSG00000020350) Bovidae ANCESTRAL SPECIES 1 ENSGT01060000248645 ENSGT00940000158522 ENSGT00950000183112.b.b ENSGT00420000029746.f ENSGT00950000183190.a.b.a.b ENSGT01050000244808.A.b.b.a ENSGT01100000263506.a.e.b #14 ENSGT01100000263514.A.e.a.a ENSGT01060000248528.b.jh.b ENSGT01100000263559.B #32 ENSGT01100000263569.a.b.b ENSGT00940000164494 ENSGT01060000248528.a.b.a.a.a.b ENSGT01100000263474.a.b.a.d #36 ENSGT00940000156302 ENSGT01100000263559.A.f #25 ENSGT01100000263575.B.u ENSGT00940000153118.db.a.a.b.a.a ENSGT00940000153118.db.a.a.b.a.b ENSGT00510000048165 ENSGT00950000182940.b.a.b ENSGT00870000136537.i ENSGT00940000160276 ENSGT00940000159172 ENSGT00550000075028 ENSGT00530000063760.b ENSGT00950000182907.a.a ENSGT00940000156893 ENSGT00390000002049.c.a ENSGT00390000003103 ENSGT00390000018360 Bovinae ANCESTRAL SPECIES 1 ENSGT00940000158423 ENSGT00390000014273.b ENSGT01050000244841.A.a.b ENSGT00730000111185 ENSGT00390000005869.a ENSGT00390000012355.B.b ENSGT01060000248645 ENSGT00940000158522 ENSGT00950000183112.b.b ENSGT00420000029746.f ENSGT00950000183190.a.b.a.b ENSGT01050000244808.A.b.b.a ENSGT01100000263506.a.e.b #14 ENSGT01100000263506.a.e.a.a.a.a.b.a #14 ENSGT00940000156302 ENSGT01100000263559.A.f #25 ENSGT01100000263575.B.u ENSGT00940000153118.db.a.a.b.a.a ENSGT00940000153118.db.a.a.b.a.b ENSGT00510000048165 ENSGT00950000182940.b.a.b ENSGT00870000136537.i ENSGT00940000160276 ENSGT00940000159172 ENSGT00550000075028 ENSGT00530000063760.b ENSGT00950000182907.a.a ENSGT00940000156893 ENSGT00390000002049.c.a ENSGT00390000003103 ENSGT00390000018360 American bison MODERN SPECIES 3032 ENSBBBG00000000337 ENSBBBG00000000326 FCGR1A (ENSBBBG00000023183) H2BC18 (ENSBBBG00000023192) #14 H3C13 (ENSBBBG00000023194) #32 H4C15 (ENSBBBG00000023197) ENSBBBG00000023201 #25 ENSBBBG00000023206 ENSBBBG00000006078 #14 ENSBBBG00000023255 #14 ENSBBBG00000023258 ENSBBBG00000008681 #25 H2BC21 (ENSBBBG00000008849) H2AC20 (ENSBBBG00000023272) H2AC21 (ENSBBBG00000023276) ENSBBBG00000023283 ENSBBBG00000023289 SV2A (ENSBBBG00000023321) ENSBBBG00000006102 MTMR11 (ENSBBBG00000023347) OTUD7B (ENSBBBG00000023362) VPS45 (ENSBBBG00000023405) PLEKHO1 (ENSBBBG00000023413) ENSBBBG00000023424 CA14 (ENSBBBG00000023456) APH1A (ENSBBBG00000023500) C1orf54 (ENSBBBG00000008854) Bos ANCESTRAL SPECIES ENSGT00940000158423 ENSGT00390000014273.b ENSGT01050000244841.A.a.b ENSGT00730000111185 ENSGT00390000005869.a ENSGT00390000012355.B.b ENSGT01060000248645 ENSGT00940000158522 ENSGT00950000183112.b.b ENSGT00420000029746.f ENSGT00950000183190.a.b.a.b ENSGT01050000244808.A.b.b.a ENSGT01100000263506.a.e.b #14 ENSGT00940000153118.db.a.a.b.a.a ENSGT00940000156302 ENSGT01100000263559.A.f #25 ENSGT01100000263575.B.u ENSGT00940000153118.db.a.a.b.a.b ENSGT00510000048165 ENSGT00950000182940.b.a.b ENSGT00870000136537.i ENSGT00940000160276 ENSGT00940000159172 ENSGT00550000075028 ENSGT00530000063760.b ENSGT00950000182907.a.a ENSGT00940000156893 ENSGT00390000002049.c.a ENSGT00390000003103 ENSGT00390000018360 ENSGT00500000045038 Bos_a ANCESTRAL SPECIES 47 ENSGT00940000156302 ENSGT01100000263559.A.f #25 ENSGT01100000263575.B.u ENSGT00940000153118.db.a.a.b.a.a ENSGT00940000153118.db.a.a.b.a.b ENSGT00510000048165 ENSGT00950000182940.b.a.b ENSGT00870000136537.i ENSGT00940000160276 ENSGT00940000159172 ENSGT00550000075028 ENSGT00530000063760.b ENSGT00950000182907.a.a ENSGT00940000156893 ENSGT00390000002049.c.a ENSGT00390000003103 ENSGT00390000018360 Domestic yak DUPLICATION Domestic yak MODERN SPECIES 22 VPS45 (ENSBGRG00000016926) OTUD7B (ENSBGRG00000016856) MTMR11 (ENSBGRG00000016764) ENSBGRG00000016698 SV2A (ENSBGRG00000016418) ENSBGRG00000016367 H2AC21 (ENSBGRG00000016349) H2AC20 (ENSBGRG00000016331) H2BC21 (ENSBGRG00000016302) ENSBGRG00000016266 #25 ENSBGRG00000016242 #32 ENSBGRG00000016186 #14 ENSBGRG00000016162 #14 ENSBGRG00000016148 ENSBGRG00000016136 #25 ENSBGRG00000016114 #25 H2BC18 (ENSBGRG00000016034) #14 FCGR1A (ENSBGRG00000015945) ENSBGRG00000015767 ENSBGRG00000015702 HJV (ENSBGRG00000015528) TXNIP (ENSBGRG00000015334) POLR3GL (ENSBGRG00000015249) ANKRD34A (ENSBGRG00000015222) LIX1L (ENSBGRG00000015160) ENSBGRG00000014985 ENSBGRG00000014804 PEX11B (ENSBGRG00000014702) ITGA10 (ENSBGRG00000013986) ANKRD35 (ENSBGRG00000013826) PIAS3 (ENSBGRG00000013646) Domestic yak DUPLICATION Domestic yak MODERN SPECIES 22 LIX1L (ENSBGRG00000015160) ANKRD34A (ENSBGRG00000015222) POLR3GL (ENSBGRG00000015249) TXNIP (ENSBGRG00000015334) HJV (ENSBGRG00000015528) ENSBGRG00000015702 ENSBGRG00000015767 FCGR1A (ENSBGRG00000015945) H2BC18 (ENSBGRG00000016034) #14 ENSBGRG00000016114 #25 ENSBGRG00000016136 #25 ENSBGRG00000016148 ENSBGRG00000016162 #14 ENSBGRG00000016186 #14 ENSBGRG00000016242 #32 ENSBGRG00000016266 #25 H2BC21 (ENSBGRG00000016302) H2AC20 (ENSBGRG00000016331) H2AC21 (ENSBGRG00000016349) ENSBGRG00000016367 SV2A (ENSBGRG00000016418) ENSBGRG00000016698 MTMR11 (ENSBGRG00000016764) OTUD7B (ENSBGRG00000016856) VPS45 (ENSBGRG00000016926) PLEKHO1 (ENSBGRG00000017135) ENSBGRG00000017198 ENSBGRG00000017224 CA14 (ENSBGRG00000000220) APH1A (ENSBGRG00000000249) C1orf54 (ENSBGRG00000000272) Domestic yak MODERN SPECIES 22 PLEKHO1 (ENSBGRG00000017135) VPS45 (ENSBGRG00000016926) OTUD7B (ENSBGRG00000016856) MTMR11 (ENSBGRG00000016764) ENSBGRG00000016698 SV2A (ENSBGRG00000016418) ENSBGRG00000016367 H2AC21 (ENSBGRG00000016349) H2AC20 (ENSBGRG00000016331) H2BC21 (ENSBGRG00000016302) ENSBGRG00000016266 #25 ENSBGRG00000016242 #32 ENSBGRG00000016186 #14 ENSBGRG00000016162 #14 ENSBGRG00000016148 ENSBGRG00000016136 #25 ENSBGRG00000016114 #25 H2BC18 (ENSBGRG00000016034) #14 FCGR1A (ENSBGRG00000015945) ENSBGRG00000015767 ENSBGRG00000015702 HJV (ENSBGRG00000015528) TXNIP (ENSBGRG00000015334) POLR3GL (ENSBGRG00000015249) ANKRD34A (ENSBGRG00000015222) LIX1L (ENSBGRG00000015160) ENSBGRG00000014985 ENSBGRG00000014804 PEX11B (ENSBGRG00000014702) ITGA10 (ENSBGRG00000013986) ANKRD35 (ENSBGRG00000013826) Bos_b ANCESTRAL SPECIES 1 ENSGT00500000045038 ENSGT00390000018360 ENSGT00390000003103 ENSGT00390000002049.c.a ENSGT00940000156893 ENSGT00950000182907.a.a ENSGT00530000063760.b ENSGT00550000075028 ENSGT00940000159172 ENSGT00940000160276 ENSGT00870000136537.i ENSGT00950000182940.b.a.b ENSGT00510000048165 ENSGT00940000153118.db.a.a.b.a.a ENSGT00940000156302 ENSGT01100000263559.A.f #25 ENSGT01100000263506.a.e.b #14 ENSGT01050000244808.A.b.b.a ENSGT00950000183190.a.b.a.b ENSGT00420000029746.f ENSGT00950000183112.b.b ENSGT00940000158522 ENSGT01060000248645 ENSGT00390000012355.B.b ENSGT00730000111185 ENSGT01050000244841.A.a.b ENSGT00390000014273.b ENSGT00940000158423 ENSGT00530000063074.a ENSGT01100000263480.a.a.a.b.a.b.b.a.b ENSGT01030000234539.a.a.b.a.a Hybrid Bos Indicus MODERN SPECIES 22 PRPF3 (ENSBIXG00005026388) MRPS21 (ENSBIXG00005004483) CIART (ENSBIXG00005026269) APH1A (ENSBIXG00005026181) CA14 (ENSBIXG00005004451) ENSBIXG00005006696 PLEKHO1 (ENSBIXG00005025976) VPS45 (ENSBIXG00005025887) OTUD7B (ENSBIXG00005025620) MTMR11 (ENSBIXG00005004349) ENSBIXG00005004342 SV2A (ENSBIXG00005025476) ENSBIXG00005025435 H2AC20 (ENSBIXG00005025423) ENSBIXG00005004318 #14 H3-7 (ENSBIXG00005025404) #25 ENSBIXG00005004313 H2BC18 (ENSBIXG00005025377) #14 FCGR1A (ENSBIXG00005025364) ENSBIXG00005025348 ENSBIXG00005025317 ENSBIXG00005025301 HJV (ENSBIXG00005006687) TXNIP (ENSBIXG00005025179) POLR3GL (ENSBIXG00005025127) ANKRD34A (ENSBIXG00005025105) ENSBIXG00005025081 ENSBIXG00005025011 ITGA10 (ENSBIXG00005004255) ANKRD35 (ENSBIXG00005024727) ENSBIXG00005004206 Cow DUPLICATION Cow MODERN SPECIES 11 ENSBTAG00000012171 SF3B1 (ENSBTAG00000008915) COQ10B (ENSBTAG00000004659) HSPD1 (ENSBTAG00000012586) HSPE1 (ENSBTAG00000012589) MOB4 (ENSBTAG00000019116) RFTN2 (ENSBTAG00000007652) MARS2 (ENSBTAG00000002056) BOLL (ENSBTAG00000031614) PLCL1 (ENSBTAG00000007635) SATB2 (ENSBTAG00000016334) ENSBTAG00000031595 C2H2orf69 (ENSBTAG00000009952) TYW5 (ENSBTAG00000019232) MAIP1 (ENSBTAG00000019231) ENSBTAG00000024003 #25 SPATS2L (ENSBTAG00000016092) KCTD18 (ENSBTAG00000002272) SGO2 (ENSBTAG00000031579) AOX1 (ENSBTAG00000009725) ENSBTAG00000047849 AOX4 (ENSBTAG00000038878) AOX2 (ENSBTAG00000026812) BZW1 (ENSBTAG00000006049) CLK1 (ENSBTAG00000005408) PPIL3 (ENSBTAG00000005416) NIF3L1 (ENSBTAG00000018282) ORC2 (ENSBTAG00000031473) HYCC2 (ENSBTAG00000021201) NDUFB3 (ENSBTAG00000012760) CFLAR (ENSBTAG00000010998) Cow MODERN SPECIES 51 ENSBTAG00000054658 ENSBTAG00000050465 ENSBTAG00000051309 ENSBTAG00000050095 #32 ENSBTAG00000053942 ENSBTAG00000053309 ENSBTAG00000053718 ENSBTAG00000051272 #25 ENSBTAG00000050054 ENSBTAG00000051460 ENSBTAG00000050880 ENSBTAG00000054782 #32 ENSBTAG00000052212 ENSBTAG00000051398 ENSBTAG00000049559 ENSBTAG00000052507 ENSBTAG00000052656 ENSBTAG00000048564 ENSBTAG00000053021 ENSBTAG00000054906 #32 ENSBTAG00000051109 Cow MODERN SPECIES 22 CA14 (ENSBTAG00000021481) ANP32E (ENSBTAG00000016730) PLEKHO1 (ENSBTAG00000004852) VPS45 (ENSBTAG00000020635) OTUD7B (ENSBTAG00000001586) MTMR11 (ENSBTAG00000012496) SF3B4 (ENSBTAG00000012495) SV2A (ENSBTAG00000001599) BOLA1 (ENSBTAG00000006050) H2AC20 (ENSBTAG00000040098) H2AC21 (ENSBTAG00000032456) ENSBTAG00000050122 H2AC19 (ENSBTAG00000046003) H4C14 (ENSBTAG00000032453) ##28 H2AC18 (ENSBTAG00000038476) H3C13 (ENSBTAG00000050881) #25 H2BC18 (ENSBTAG00000032455) #14 FCGR1A (ENSBTAG00000008592) ENSBTAG00000037565 MGC134040 (ENSBTAG00000022741) HJV (ENSBTAG00000021823) TXNIP (ENSBTAG00000020060) POLR3GL (ENSBTAG00000013910) ANKRD34A (ENSBTAG00000008365) RBM8A (ENSBTAG00000008369) GNRHR2 (ENSBTAG00000008370) PEX11B (ENSBTAG00000008372) ITGA10 (ENSBTAG00000008373) ANKRD35 (ENSBTAG00000038844) ENSBTAG00000052421 PIAS3 (ENSBTAG00000021634) Caprinae ANCESTRAL SPECIES 51 ENSGT01100000263506.a.e.a.a.a.b.a.a.b.a.b.a.a.a.vc.a #14 ENSGT00940000153092.a.a.c.a.a ENSGT01100000263514.A.e.a.b.a.b.a.a.a.a ENSGT01060000248528.b.jh.b ENSGT01100000263514.A.e.a.a ENSGT00940000155501.a.b ENSGT00990000203553.c.b #28 ENSGT01100000263506.a.e.a.a.a.b.a.a.b.a.b.a.b #14 ENSGT00940000155501.a.a ENSGT00940000153092.a.b.f.n.b ENSGT01100000263506.a.e.a.a.a.b.a.a.b.a.a #14 ENSGT00940000163525 ENSGT01100000263474.a.b.a.d #36 ENSGT00940000156302 ENSGT01100000263559.A.f #25 ENSGT01060000248528.b.kh.yb ENSGT01100000263517.b.d.m.a.a.b ENSGT00940000163082 ENSGT01100000263514.A.e.a.b.a.b.a.a.a.b.a.b ENSGT01100000263575.A ENSGT00940000153092.a.a.c.a.b.b.b ENSGT00940000163269 ENSGT00940000160468 ENSGT00940000161926 ENSGT00940000162523 ENSGT00940000162346 ENSGT00940000160894 ENSGT01100000263474.a.a.c.a ##36 ENSGT01100000263474.a.a.c.b ##36 ENSGT00950000183108.a Rambouillet Sheep DUPLICATION Rambouillet Sheep MODERN SPECIES PLEKHO1 (ENSOARG00020007594) VPS45 (ENSOARG00020007445) OTUD7B (ENSOARG00020007348) MTMR11 (ENSOARG00020007236) SF3B4 (ENSOARG00020007183) SV2A (ENSOARG00020007009) BOLA1 (ENSOARG00020006951) HIST2H2AB (ENSOARG00020006921) HIST2H2AC (ENSOARG00020006891) HIST2H2BE (ENSOARG00020006877) ENSOARG00020006850 #32 ENSOARG00020006832 ENSOARG00020006810 #36 ENSOARG00020006796 ENSOARG00020006772 ENSOARG00020006745 #25 ENSOARG00020006725 H3-7 (ENSOARG00020006703) #25 H2BC18 (ENSOARG00020006656) #14 FCGR1A (ENSOARG00020006588) ENSOARG00020006514 ENSOARG00020006487 ENSOARG00020006466 HJV (ENSOARG00020004031) TXNIP (ENSOARG00020003962) POLR3GL (ENSOARG00020003936) ANKRD34A (ENSOARG00020003925) LIX1L (ENSOARG00020003889) RBM8A (ENSOARG00020003860) PEX11B (ENSOARG00020003815) ITGA10 (ENSOARG00020003429) Rambouillet Sheep MODERN SPECIES OTUD7B (ENSOARG00020007348) MTMR11 (ENSOARG00020007236) SF3B4 (ENSOARG00020007183) SV2A (ENSOARG00020007009) BOLA1 (ENSOARG00020006951) HIST2H2AB (ENSOARG00020006921) HIST2H2AC (ENSOARG00020006891) HIST2H2BE (ENSOARG00020006877) ENSOARG00020006850 #32 ENSOARG00020006832 ENSOARG00020006810 #36 ENSOARG00020006796 ENSOARG00020006772 ENSOARG00020006745 #25 ENSOARG00020006725 H3-7 (ENSOARG00020006703) #25 H2BC18 (ENSOARG00020006656) #14 FCGR1A (ENSOARG00020006588) ENSOARG00020006514 ENSOARG00020006487 ENSOARG00020006466 HJV (ENSOARG00020004031) TXNIP (ENSOARG00020003962) POLR3GL (ENSOARG00020003936) ANKRD34A (ENSOARG00020003925) LIX1L (ENSOARG00020003889) RBM8A (ENSOARG00020003860) PEX11B (ENSOARG00020003815) ITGA10 (ENSOARG00020003429) PIAS3 (ENSOARG00020003167) NUDT17 (ENSOARG00020003144) Goat DUPLICATION Goat MODERN SPECIES 22 PLEKHO1 (ENSCHIG00000022413) VPS45 (ENSCHIG00000010595) OTUD7B (ENSCHIG00000020643) MTMR11 (ENSCHIG00000021928) ENSCHIG00000025663 SV2A (ENSCHIG00000017231) BOLA1 (ENSCHIG00000023087) H2AC21 (ENSCHIG00000006209) H2AC20 (ENSCHIG00000010392) H2BC21 (ENSCHIG00000012955) ENSCHIG00000010054 #32 ENSCHIG00000022263 ENSCHIG00000007823 ENSCHIG00000013722 ENSCHIG00000008044 ENSCHIG00000013241 #25 ENSCHIG00000009699 ENSCHIG00000010234 #25 H2BC18 (ENSCHIG00000007673) #14 FCGR1A (ENSCHIG00000027141) ENSCHIG00000017683 ENSCHIG00000023415 HJV (ENSCHIG00000010408) TXNIP (ENSCHIG00000017689) POLR3GL (ENSCHIG00000008824) ANKRD34A (ENSCHIG00000007942) LIX1L (ENSCHIG00000012584) RBM8A (ENSCHIG00000012114) ITGA10 (ENSCHIG00000027027) ANKRD35 (ENSCHIG00000018547) PIAS3 (ENSCHIG00000010071) Goat MODERN SPECIES 22 OTUD7B (ENSCHIG00000020643) MTMR11 (ENSCHIG00000021928) ENSCHIG00000025663 SV2A (ENSCHIG00000017231) BOLA1 (ENSCHIG00000023087) H2AC21 (ENSCHIG00000006209) H2AC20 (ENSCHIG00000010392) H2BC21 (ENSCHIG00000012955) ENSCHIG00000010054 #32 ENSCHIG00000022263 ENSCHIG00000007823 ENSCHIG00000013722 ENSCHIG00000008044 ENSCHIG00000013241 #25 ENSCHIG00000009699 ENSCHIG00000010234 #25 H2BC18 (ENSCHIG00000007673) #14 FCGR1A (ENSCHIG00000027141) ENSCHIG00000017683 ENSCHIG00000023415 HJV (ENSCHIG00000010408) TXNIP (ENSCHIG00000017689) POLR3GL (ENSCHIG00000008824) ANKRD34A (ENSCHIG00000007942) LIX1L (ENSCHIG00000012584) RBM8A (ENSCHIG00000012114) ITGA10 (ENSCHIG00000027027) ANKRD35 (ENSCHIG00000018547) PIAS3 (ENSCHIG00000010071) NUDT17 (ENSCHIG00000014413) POLR3C (ENSCHIG00000022431) Marsupialia ANCESTRAL SPECIES 22 ENSGT00940000153092.a.a.b ENSGT01100000263559.A.f #25 ENSGT01060000248528.b.kh ENSGT01100000263559.B #32 ENSGT00940000156302 ENSGT01100000263575.B ENSGT01100000263575.A ENSGT00940000161385 ENSGT00940000158017 ENSGT00940000161530 ENSGT00940000161686 ENSGT00530000063753.B ENSGT00940000153882.a.b.b.b ENSGT00390000007779 ENSGT00940000157016 ENSGT00940000158772 ENSGT00940000163105 Opossum DUPLICATION Opossum MODERN SPECIES 1 ENSMODG00000039920 ENSMODG00000038299 ENSMODG00000038832 #35 ENSMODG00000040021 #25 ENSMODG00000044872 ENSMODG00000045603 ENSMODG00000041872 #35 HIST1H4I (ENSMODG00000050634) ENSMODG00000023582 ENSMODG00000039289 ENSMODG00000040158 ENSMODG00000037177 ENSMODG00000040044 #35 ENSMODG00000039862 ENSMODG00000049273 ENSMODG00000038443 #25 ENSMODG00000039692 ENSMODG00000041060 ENSMODG00000008744 ENSMODG00000008756 ENSMODG00000008778 ZNF496 (ENSMODG00000008791) ENSMODG00000048059 ENSMODG00000008799 ENSMODG00000046293 ENSMODG00000008807 ENSMODG00000008875 TRIM58 (ENSMODG00000008884) ENSMODG00000008925 ENSMODG00000008951 ENSMODG00000008981 Opossum MODERN SPECIES 1 ENSMODG00000008744 ENSMODG00000041060 ENSMODG00000039692 ENSMODG00000038443 #25 ENSMODG00000049273 ENSMODG00000039862 ENSMODG00000040044 #35 ENSMODG00000037177 ENSMODG00000040158 ENSMODG00000039289 ENSMODG00000023582 HIST1H4I (ENSMODG00000050634) ENSMODG00000041872 #35 ENSMODG00000045603 ENSMODG00000044872 ENSMODG00000040021 #25 ENSMODG00000038832 #35 ENSMODG00000038299 ENSMODG00000039920 HIST1H4I (ENSMODG00000039780) ENSMODG00000028015 #37 ENSMODG00000046495 ENSMODG00000047806 BTN2A2 (ENSMODG00000008595) BTN1A1 (ENSMODG00000047634) ENSMODG00000005045 PIK3R5 (ENSMODG00000008530) ENSMODG00000041093 STX8 (ENSMODG00000008471) CFAP52 (ENSMODG00000008363) USP43 (ENSMODG00000008348) Marsupialia_b ANCESTRAL SPECIES 59 ENSGT00940000153092.a.a.b ENSGT01100000263559.A.f #25 ENSGT01100000263575.B ENSGT00940000156302 ENSGT01100000263559.B #32 ENSGT00940000163082 Diprotodontia ANCESTRAL SPECIES 119 ENSGT00940000153092.a.a.b ENSGT01100000263559.A.f #25 ENSGT01100000263575.B ENSGT00940000156302 ENSGT01100000263559.B #32 ENSGT00940000163082 Wallaby DUPLICATION Wallaby MODERN SPECIES 14270 ENSMEUG00000009843 ENSMEUG00000009839 ENSMEUG00000009833 #25 ENSMEUG00000009816 Wallaby MODERN SPECIES 12404 ENSMEUG00000005952 #32 ENSMEUG00000005947 #25 Wallaby MODERN SPECIES 10486 ENSMEUG00000000670 #25 ENSMEUG00000000673 Wallaby MODERN SPECIES 13830 ENSMEUG00000009755 #25 ENSMEUG00000009762 Diprotodontia_a ANCESTRAL SPECIES 6 ENSGT00390000002799 ENSGT00390000013847 ENSGT01030000234539.a.a.b.a.a ENSGT00530000063074.a ENSGT00940000158423 ENSGT00390000014273.b ENSGT01050000244841.A.a.b ENSGT00730000111185 ENSGT00390000005869.a ENSGT00390000012355.B.b ENSGT01060000248645 ENSGT00940000158522 ENSGT00950000183112.b.b ENSGT01100000263575.B.e.b ENSGT00940000153092.a.a.b ENSGT01100000263559.A.f #25 ENSGT01100000263575.B.f ENSGT00940000153125.F ENSGT00940000153118.db.a.a.b.a.b ENSGT01100000263506.a.f #14 ENSGT00510000048165 ENSGT00950000182940.b.a.b ENSGT00870000136537 ENSGT00940000160276 ENSGT00940000159172 ENSGT00550000075028 ENSGT00530000063760.b ENSGT00950000182907.a.a ENSGT00940000156893 ENSGT00390000002049.c.a ENSGT00390000018360 Common wonbat DUPLICATION Common wonbat MODERN SPECIES 1007 ENSVURG00010001436 ENSVURG00010001404 ENSVURG00010001381 ENSVURG00010001379 ENSVURG00010001372 ENSVURG00010001364 ENSVURG00010001356 ENSVURG00010001350 ENSVURG00010001341 ENSVURG00010001317 ENSVURG00010001308 #32 ENSVURG00010001221 ENSVURG00010001206 ENSVURG00010001199 ENSVURG00010001177 ENSVURG00010001172 #25 ENSVURG00010001164 ENSVURG00010001132 ENSVURG00010001073 ENSVURG00010001047 ENSVURG00010001021 #14 ENSVURG00010000996 ENSVURG00010000953 ENSVURG00010000937 ENSVURG00010000922 ENSVURG00010000895 ENSVURG00010000870 ENSVURG00010000839 ANP32E (ENSVURG00010000762) ENSVURG00010000731 ENSVURG00010000715 Common wonbat MODERN SPECIES 746 ENSVURG00010005173 #35 ENSVURG00010005043 ENSVURG00010005034 #14 ENSVURG00010005028 #25 ENSVURG00010004997 #35 ENSVURG00010004986 #32 ENSVURG00010004971 ENSVURG00010004956 ENSVURG00010004911 ENSVURG00010004824 ENSVURG00010004807 ENSVURG00010004804 ENSVURG00010004790 ENSVURG00010004733 ENSVURG00010004681 ENSVURG00010004665 BTN1A1 (ENSVURG00010004551) ENSVURG00010004530 ZNF286A (ENSVURG00010004522) koala DUPLICATION koala MODERN SPECIES 558 ENSPCIG00000032833 ENSPCIG00000036566 ENSPCIG00000033888 ENSPCIG00000033339 ENSPCIG00000035808 #25 ENSPCIG00000036723 koala MODERN SPECIES 4 LIX1L (ENSPCIG00000011929) ANKRD34A (ENSPCIG00000011927) POLR3GL (ENSPCIG00000011925) TXNIP (ENSPCIG00000011922) HJV (ENSPCIG00000031042) ENSPCIG00000031302 ENSPCIG00000037192 ENSPCIG00000034427 ENSPCIG00000032472 ENSPCIG00000031998 ENSPCIG00000034490 ENSPCIG00000034324 H1-5 (ENSPCIG00000034869) ENSPCIG00000019912 ENSPCIG00000036686 ENSPCIG00000036846 #25 ENSPCIG00000037267 ENSPCIG00000008760 H2AC21 (ENSPCIG00000036441) ENSPCIG00000031608 #14 BOLA1 (ENSPCIG00000008763) SV2A (ENSPCIG00000008764) SF3B4 (ENSPCIG00000008765) MTMR11 (ENSPCIG00000008766) OTUD7B (ENSPCIG00000008768) VPS45 (ENSPCIG00000008774) PLEKHO1 (ENSPCIG00000030649) ENSPCIG00000033433 CA14 (ENSPCIG00000008783) APH1A (ENSPCIG00000008786) CIART (ENSPCIG00000035308) Tasmanian devil DUPLICATION Tasmanian devil MODERN SPECIES 3 CCDC42 (ENSSHAG00000007214) ENSSHAG00000006948 ENSSHAG00000005879 ENSSHAG00000005087 ENSSHAG00000002977 CFAP52 (ENSSHAG00000021427) STX8 (ENSSHAG00000010361) NTN1 (ENSSHAG00000027889) ENSSHAG00000002313 ENSSHAG00000000878 ENSSHAG00000025589 ##36 ENSSHAG00000022029 ENSSHAG00000003486 ENSSHAG00000005678 ENSSHAG00000022380 ENSSHAG00000023000 #25 ENSSHAG00000028669 ENSSHAG00000030497 ENSSHAG00000027822 ENSSHAG00000030240 ENSSHAG00000026049 #25 ENSSHAG00000031290 ENSSHAG00000020659 #25 ENSSHAG00000029033 ENSSHAG00000031549 ZNF692 (ENSSHAG00000005493) ENSSHAG00000003615 ENSSHAG00000002617 HEXD (ENSSHAG00000002559) OGFOD3 (ENSSHAG00000028666) CYBC1 (ENSSHAG00000022500) Tasmanian devil MODERN SPECIES 3 TBCD (ENSSHAG00000028769) FN3KRP (ENSSHAG00000023662) WDR45B (ENSSHAG00000003572) FOXK2 (ENSSHAG00000029677) NARF (ENSSHAG00000002826) CYBC1 (ENSSHAG00000022500) OGFOD3 (ENSSHAG00000028666) HEXD (ENSSHAG00000002559) ENSSHAG00000002617 ENSSHAG00000003615 ZNF692 (ENSSHAG00000005493) ENSSHAG00000031549 ENSSHAG00000029033 ENSSHAG00000020659 #25 ENSSHAG00000031290 ENSSHAG00000026049 #25 ENSSHAG00000030240 ENSSHAG00000027822 ENSSHAG00000030497 ENSSHAG00000028669 ENSSHAG00000023000 #25 ENSSHAG00000022380 ENSSHAG00000005678 ENSSHAG00000003486 ENSSHAG00000022029 ENSSHAG00000025589 ##36 ENSSHAG00000000878 ENSSHAG00000002313 NTN1 (ENSSHAG00000027889) STX8 (ENSSHAG00000010361) CFAP52 (ENSSHAG00000021427) Tasmanian devil MODERN SPECIES 3 B3GNTL1 (ENSSHAG00000003694) ZNF750 (ENSSHAG00000008537) TBCD (ENSSHAG00000028769) FN3KRP (ENSSHAG00000023662) WDR45B (ENSSHAG00000003572) FOXK2 (ENSSHAG00000029677) NARF (ENSSHAG00000002826) CYBC1 (ENSSHAG00000022500) OGFOD3 (ENSSHAG00000028666) HEXD (ENSSHAG00000002559) ENSSHAG00000002617 ENSSHAG00000003615 ZNF692 (ENSSHAG00000005493) ENSSHAG00000031549 ENSSHAG00000029033 ENSSHAG00000020659 #25 ENSSHAG00000031290 ENSSHAG00000026049 #25 ENSSHAG00000030240 ENSSHAG00000027822 ENSSHAG00000030497 ENSSHAG00000028669 ENSSHAG00000023000 #25 ENSSHAG00000022380 ENSSHAG00000005678 ENSSHAG00000003486 ENSSHAG00000022029 ENSSHAG00000025589 ##36 ENSSHAG00000000878 ENSSHAG00000002313 NTN1 (ENSSHAG00000027889) Tasmanian devil MODERN SPECIES 3 CNPY4 (ENSSHAG00000023094) AP4M1 (ENSSHAG00000028001) MCM7 (ENSSHAG00000029246) COPS6 (ENSSHAG00000011684) ZNF3 (ENSSHAG00000011938) ENSSHAG00000030879 ENSSHAG00000012439 ENSSHAG00000012687 ENSSHAG00000012892 ENSSHAG00000027999 ENSSHAG00000025476 ENSSHAG00000000638 ENSSHAG00000025316 ENSSHAG00000022269 ENSSHAG00000026791 ENSSHAG00000000585 #25 ENSSHAG00000026903 ENSSHAG00000029410 ENSSHAG00000024125 ENSSHAG00000001547 ENSSHAG00000004487 ENSSHAG00000001637 ENSSHAG00000004434 ENSSHAG00000005615 ENSSHAG00000000918 POLR1H (ENSSHAG00000001554) RNF39 (ENSSHAG00000025183) PPP1R11 (ENSSHAG00000025209) TRIM10 (ENSSHAG00000027656) TRIM15 (ENSSHAG00000002782) TRIM26 (ENSSHAG00000002914) Sauria ANCESTRAL SPECIES 113 ENSGT00940000160426 ENSGT01100000263559.A.f #25 ENSGT01060000248528.b.kh ENSGT01100000263474.a.b.b.j.b.b.b.a.a ##36 ENSGT00940000153092.a.a Lepidosauria ANCESTRAL SPECIES 171 ENSGT01100000263474.a.b.b.j.b.b.b.b ##36 ENSGT00940000156302 ENSGT01100000263559.B #32 ENSGT00950000183089 #37 ENSGT01060000248528.b.kh ENSGT01100000263474.a.b.b.j.b.b.b.a.a ##36 ENSGT00940000153092.a.a ENSGT01100000263559.A.f #25 ENSGT00940000153118.db.a.a.b.b tuatara MODERN SPECIES 236 CLDN15 (ENSSPUG00000018594) FIS1 (ENSSPUG00000018599) ZNHIT1 (ENSSPUG00000018605) PLOD3 (ENSSPUG00000018633) ARHGEF15 (ENSSPUG00000018677) ENSSPUG00000018688 SLC25A35 (ENSSPUG00000018695) RANGRF (ENSSPUG00000018698) PFAS (ENSSPUG00000018703) ENSSPUG00000018710 #32 ENSSPUG00000018713 ENSSPUG00000018716 ##36 ENSSPUG00000018719 ##36 ENSSPUG00000018720 ENSSPUG00000018723 ENSSPUG00000018726 #25 ENSSPUG00000018728 Episquamata ANCESTRAL SPECIES 5 ENSGT00520000055620.A.c ENSGT01100000263537.a ENSGT00940000153402 ENSGT00940000153118.db.b ENSGT01100000263474.a.b.b.j.b.b.b.a.a.a.a.b.b.a.b ##36 ENSGT01060000248528.b.kh ENSGT00950000183089 #37 ENSGT01100000263514.A.f.o.a ENSGT01100000263504.b ENSGT01100000263559.B #32 ENSGT00940000156302.jc ENSGT01100000263474.a.b.b.j.b.b.b.a.b.b.a ##36 ENSGT00990000203553.c.a.a.b.a.a.a.b #15 ENSGT01100000263474.a.b.b.j.b.b.b.a.b.a ##36 ENSGT00940000160426 ENSGT01100000263559.A.f #25 ENSGT00390000007600 ENSGT00940000161324 ENSGT00390000013834 ENSGT00940000160771 ENSGT00940000165211 ENSGT01030000234571.b.b.a.a.b ENSGT01030000234558.A.a.a.a ENSGT00390000018426 ENSGT01030000234535.A.w ENSGT00390000000592 ENSGT00940000157650 ENSGT00940000165987 ENSGT00390000010706 ENSGT00950000182966.C.b ENSGT00950000182966.C.a Toxicofera ANCESTRAL SPECIES 19 ENSGT00940000153339 ENSGT00940000158061 ENSGT00940000156784 ENSGT00390000016619.b.d.a ENSGT00940000160712 ENSGT00940000161232 ENSGT00940000160763 ENSGT00940000160217 ENSGT00530000063825.B ENSGT00940000154126.h.a ENSGT00940000159931 ENSGT00390000002307 ENSGT00940000159065 ENSGT01100000263474.a.b.b.j.b.b.b.a.b.a ##36 ENSGT00940000160426 ENSGT01100000263559.A.f #25 ENSGT00940000153118.eb.o.b ENSGT01100000263474.a.b.b.j.b.b.b.a.a.a.a.b.b.b ##36 ENSGT00950000183089 #37 ENSGT01100000263504.a.b.b.b.a.a ENSGT01100000263567.a.b ##35 ENSGT01060000248528.b.jh.a.a.b ENSGT00940000153118.db.b ENSGT01100000263474.a.b.b.j.b.b.b.a.a.a.a.b.b.a.a ##36 ENSGT01060000248528.b.kh ENSGT00940000153092.a.b ENSGT00940000167399.a ENSGT01000000214708 ENSGT00940000154535.C ENSGT00940000162394 ENSGT00940000159148 Elapidae ANCESTRAL SPECIES 95 ENSGT01100000263567.a.a #35 ENSGT01100000263474.a.b.b.j.b.b.b.a.a.a.a.a ##36 ENSGT00940000153092.a.a ENSGT01100000263559.A.f #25 ENSGT00940000153118.db.a.a.b.b Indian cobra DUPLICATION Indian cobra MODERN SPECIES 337 METTL3 (ENSNNAG00000005384) TOX4 (ENSNNAG00000005367) ENSNNAG00000005328 ENSNNAG00000005290 ENSNNAG00000003862 ENSNNAG00000003706 ENSNNAG00000003677 ENSNNAG00000003656 ENSNNAG00000003645 ENSNNAG00000003629 #14 ENSNNAG00000003622 ENSNNAG00000003602 #35 ENSNNAG00000003590 #35 ENSNNAG00000003580 ##36 ENSNNAG00000003564 ENSNNAG00000003544 #25 ENSNNAG00000003537 ENSNNAG00000012839 RANGRF (ENSNNAG00000012820) SLC25A35 (ENSNNAG00000012786) ENSNNAG00000011813 ENSNNAG00000011648 PLOD3 (ENSNNAG00000011348) ZNHIT1 (ENSNNAG00000011319) FIS1 (ENSNNAG00000011299) CLDN15 (ENSNNAG00000011288) ENSNNAG00000011270 ADAT3 (ENSNNAG00000011253) ENSNNAG00000011240 ##36 ENSNNAG00000011213 ENSNNAG00000011191 Indian cobra MODERN SPECIES 1 ATP13A1 (ENSNNAG00000004315) CHCHD5 (ENSNNAG00000004294) ENSNNAG00000004251 ENSNNAG00000004184 ENSNNAG00000004165 ENSNNAG00000004151 FBXL12 (ENSNNAG00000004138) UBL5 (ENSNNAG00000004123) PIN1 (ENSNNAG00000004077) ENSNNAG00000004055 OLFM2 (ENSNNAG00000004038) ENSNNAG00000004010 ENSNNAG00000003993 #15 ENSNNAG00000003983 ##36 ENSNNAG00000003973 ENSNNAG00000003970 #25 ENSNNAG00000003960 ENSNNAG00000003953 ENSNNAG00000003948 ENSNNAG00000003930 ##36 HDAC7 (ENSNNAG00000003661) ENSNNAG00000003605 SLC48A1 (ENSNNAG00000003594) ENSNNAG00000003586 RAPGEF3 (ENSNNAG00000003555) ENSNNAG00000003540 ENSNNAG00000003526 ENDOU (ENSNNAG00000003517) NEUROD4 (ENSNNAG00000003509) ENSNNAG00000003495 PPP1R1A (ENSNNAG00000003483) Elapidae_a ANCESTRAL SPECIES 134 ENSGT01060000248528.b.jh.a.b ENSGT01100000263559.A.f #25 ENSGT00390000007600 ENSGT00940000163503.A ENSGT00390000013834 ENSGT00940000160771 ENSGT00940000165211.a ENSGT00940000165211.b ENSGT01030000234571.b.b.a.a.b ENSGT01030000234558.A.a.a.a ENSGT00390000018426 ENSGT01030000234535.A.w ENSGT00390000000592 ENSGT00940000157650 ENSGT00940000165987 ENSGT00390000010706 Blue-lipped sea krait DUPLICATION Blue-lipped sea krait MODERN SPECIES 6152 ENSLLTG00000003480 #25 ENSLLTG00000003458 ENSLLTG00000003442 ENSLLTG00000003433 Blue-lipped sea krait MODERN SPECIES 9304 ENSLLTG00000012981 #25 Acanthophiinae ANCESTRAL SPECIES 175 ENSGT01060000248528.b.jh.a.b ENSGT01100000263559.A.f #25 ENSGT00950000183089.o.b #37 ENSGT00940000159217.q ENSGT00940000158370.o.b ENSGT00940000158980 ENSGT00390000014827 Eastern brown snake MODERN SPECIES 140 ENSPTXG00000014109 ENSPTXG00000014107 ENSPTXG00000014106 ENSPTXG00000014105 ENSPTXG00000014104 ENSPTXG00000014103 ##36 ENSPTXG00000014102 ##36 ENSPTXG00000014101 ENSPTXG00000014100 ENSPTXG00000014099 ##36 ENSPTXG00000014098 ENSPTXG00000014097 ENSPTXG00000014096 ENSPTXG00000014095 ##36 ENSPTXG00000014094 ENSPTXG00000014093 #25 PFAS (ENSPTXG00000013985) ENSPTXG00000013981 ENSPTXG00000013980 ENSPTXG00000012029 PLOD3 (ENSPTXG00000011719) ZNHIT1 (ENSPTXG00000011717) FIS1 (ENSPTXG00000011716) CLDN15 (ENSPTXG00000011715) ENSPTXG00000011714 ADAT3 (ENSPTXG00000011713) ENSPTXG00000011712 ##36 ENSPTXG00000011711 ENSPTXG00000011710 ENSPTXG00000011709 Mainland tiger snake DUPLICATION Mainland tiger snake MODERN SPECIES 616 ENSNSUG00000002679 ENSNSUG00000002675 ENSNSUG00000002670 #25 ENSNSUG00000002667 #37 ENSNSUG00000002661 ENSNSUG00000002660 AURKB (ENSNSUG00000002658) TMEM107 (ENSNSUG00000002656) Mainland tiger snake MODERN SPECIES 582 TAF9 (ENSNSUG00000001327) PDZD11 (ENSNSUG00000001333) ENSNSUG00000001335 ENSNSUG00000001345 #37 ENSNSUG00000001350 ##36 ENSNSUG00000001358 ENSNSUG00000001362 #25 ENSNSUG00000001372 ##36 Lizard DUPLICATION Lizard DUPLICATION Lizard MODERN SPECIES 1078 TRAV39 (ENSACAG00000038138) OR4E1 (ENSACAG00000002843) METTL3 (ENSACAG00000002851) TOX4 (ENSACAG00000002921) RAB2B (ENSACAG00000035863) CHD8 (ENSACAG00000003139) SUPT16H (ENSACAG00000003193) RPGRIP1 (ENSACAG00000003274) ENSACAG00000003293 ENSACAG00000029093 ENSACAG00000035394 ENSACAG00000028545 ENSACAG00000035911 #14 ENSACAG00000036025 ##36 ENSACAG00000043863 ENSACAG00000003388 #25 ENSACAG00000003391 ENSACAG00000003547 ENSACAG00000003563 ENSACAG00000003582 ENSACAG00000003606 ENSACAG00000003870 ENSACAG00000003968 Lizard MODERN SPECIES 866 ENSACAG00000001184 ENSACAG00000011774 ENSACAG00000015323 ENSACAG00000041316 ENSACAG00000025743 #25 ENSACAG00000026502 ENSACAG00000015297 ##36 ENSACAG00000015318 ##36 ENSACAG00000041717 HDAC7 (ENSACAG00000015098) ENSACAG00000037816 ENSACAG00000015086 SLC48A1 (ENSACAG00000036698) RAPGEF3 (ENSACAG00000014979) ENSACAG00000014928 ENSACAG00000014914 ENSACAG00000014910 ENSACAG00000041465 PPP1R1A (ENSACAG00000028274) PDE1B (ENSACAG00000014673) Lizard MODERN SPECIES 893 CORO1A (ENSACAG00000015112) ENSACAG00000044160 ENSACAG00000015221 ENSACAG00000029565 ENSACAG00000028962 ENSACAG00000015463 ENSACAG00000044868 ENSACAG00000015467 ENSACAG00000015471 ENSACAG00000034548 ENSACAG00000015475 #37 ENSACAG00000042125 ENSACAG00000021043 ENSACAG00000035018 ENSACAG00000038872 ENSACAG00000024894 #25 ENSACAG00000041220 ENSACAG00000038012 ENSACAG00000039143 ENSACAG00000036904 ENSACAG00000038286 ENSACAG00000035522 ENSACAG00000036629 ENSACAG00000029472 ENSACAG00000044338 ENSACAG00000044060 ENSACAG00000015243 CCDC106 (ENSACAG00000015482) ENSACAG00000015489 EPN1 (ENSACAG00000015534) ENSACAG00000033109 Laterata ANCESTRAL SPECIES 6 ENSGT01050000244814.a.a.a.b ENSGT00530000063694.b ENSGT00410000026495.B ENSGT00940000160320 ENSGT00950000182961.a.b.b.h ENSGT00950000182961.a.b.b.g ENSGT00940000155774.b ENSGT01030000234599.a.b ENSGT01100000263515.a.b.a.b.a ENSGT00940000153125.F ENSGT01100000263559.B #32 ENSGT00940000156302.jc ENSGT01100000263474.a.b.b.j.b.b.b.a.b.b.a ##36 ENSGT01100000263474.a.b.b.j.b.b.b.a.a.a.a.a ##36 ENSGT00940000153092.a.a ENSGT01100000263559.A.f #25 ENSGT01100000263954 ENSGT00390000013440 ENSGT00940000171081 ENSGT00530000066362 ENSGT00390000003753.b ENSGT00930000151058 ENSGT00390000006233.c.a.b ENSGT00390000013260.C ENSGT00940000160916 ENSGT00390000014089 ENSGT00960000189329 ENSGT00390000001566 ENSGT00390000017181 ENSGT00950000182953.B.a ENSGT00390000000068 Common wall lizard DUPLICATION Common wall lizard MODERN SPECIES 1 ENSPMRG00000019749 GSG1 (ENSPMRG00000019745) FAM234B (ENSPMRG00000019736) ENSPMRG00000019731 ENSPMRG00000019726 ENSPMRG00000019720 ENSPMRG00000019714 ENSPMRG00000012071 DDX47 (ENSPMRG00000012066) APOLD1 (ENSPMRG00000012062) ENSPMRG00000012052 ENSPMRG00000012046 ENSPMRG00000012044 ENSPMRG00000012042 #32 ENSPMRG00000012040 ##36 ENSPMRG00000012030 #25 ENSPMRG00000012026 SMCO3 (ENSPMRG00000012022) ENSPMRG00000012019 ENSPMRG00000012015 MGP (ENSPMRG00000012012) ENSPMRG00000012008 ENSPMRG00000012002 ARHGDIB (ENSPMRG00000011997) PDE6H (ENSPMRG00000011991) AGBL3 (ENSPMRG00000011977) TMEM140 (ENSPMRG00000011972) WDR91 (ENSPMRG00000011912) STRA8 (ENSPMRG00000011902) ENSPMRG00000011865 ENSPMRG00000011861 Common wall lizard MODERN SPECIES 4 ENSPMRG00000013720 ENSPMRG00000013718 ##36 ENSPMRG00000013715 ##36 ENSPMRG00000013712 ENSPMRG00000013710 #28 ENSPMRG00000013707 ENSPMRG00000013705 ##36 ENSPMRG00000013701 ##31 ENSPMRG00000013696 #14 ENSPMRG00000013693 ##31 H3C15 (ENSPMRG00000013691) #32 ENSPMRG00000013687 ENSPMRG00000013682 ENSPMRG00000013680 ##36 ENSPMRG00000013678 ENSPMRG00000013675 #25 PFAS (ENSPMRG00000013655) ENSPMRG00000013625 RANGRF (ENSPMRG00000013608) SLC25A35 (ENSPMRG00000013600) ENSPMRG00000013520 ARHGEF15 (ENSPMRG00000013487) PLOD3 (ENSPMRG00000013206) ENSPMRG00000013126 ENSPMRG00000013120 ENSPMRG00000013115 ENSPMRG00000013099 FIS1 (ENSPMRG00000013093) ENSPMRG00000013083 ENSPMRG00000013065 ADAT3 (ENSPMRG00000013055) Archelosauria ANCESTRAL SPECIES 76 ENSGT00940000153118.db.a.a.b.a.a.a.b ENSGT01100000263474.a.b.b.j.b.b.b.b.b.a ##36 ENSGT00950000183089.s.a.a #37 ENSGT01100000263474.a.b.b.j.b.b.a ##36 ENSGT00940000153118.db.a.b ENSGT01100000263506.a #14 ENSGT01100000263559.B #32 ENSGT01100000263474.a.b.b.j.a.a.a ##36 ENSGT00940000156302 ENSGT01100000263559.A.f #25 ENSGT01060000248528.b.kh ENSGT01100000263514.A.f ENSGT01100000263474.a.b.b.j.a.a.b ##36 ENSGT00940000153118.db.a.a.b.a.a.b Cryptodira ANCESTRAL SPECIES 128 ENSGT00940000156302.ec.a.b ENSGT01100000263559.A.f #25 ENSGT01060000248528.b.kh ENSGT01100000263474.a.b.b.j.a.b.a ##36 ENSGT00940000153118.db.a.a.b.a.a.a.b ENSGT00940000155501.b.j Chinese turtle DUPLICATION Chinese turtle MODERN SPECIES 1483 ENSPSIG00000000903 ENSPSIG00000000871 ENSPSIG00000000808 ENSPSIG00000000755 ##36 ENSPSIG00000000740 ENSPSIG00000000710 ENSPSIG00000000671 ##36 ENSPSIG00000000663 ENSPSIG00000000612 #25 ENSPSIG00000000572 #28 ENSPSIG00000000542 ENSPSIG00000000519 ENSPSIG00000006804 ENSPSIG00000000509 ENSPSIG00000000485 ##36 ENSPSIG00000000424 ENSPSIG00000000413 ##36 Chinese turtle MODERN SPECIES 1257 ENSPSIG00000001694 #32 ENSPSIG00000001671 #32 ENSPSIG00000001655 ##36 ENSPSIG00000001644 ##36 ENSPSIG00000001626 ENSPSIG00000001616 #25 H4C4 (ENSPSIG00000001606) ENSPSIG00000001592 ENSPSIG00000001580 ENSPSIG00000001543 ENSPSIG00000001532 #37 ENSPSIG00000003758 ##36 ENSPSIG00000001516 ENSPSIG00000001507 #28 ENSPSIG00000001495 #10 ENSPSIG00000001472 ##36 ENSPSIG00000001455 ENSPSIG00000001422 ENSPSIG00000003754 #25 ENSPSIG00000001382 #32 ENSPSIG00000003742 ##36 Chinese turtle MODERN SPECIES 1257 TMEM140 (ENSPSIG00000015467) AGBL3 (ENSPSIG00000015627) PDE6H (ENSPSIG00000016325) ARHGDIB (ENSPSIG00000016539) ERP27 (ENSPSIG00000003609) MGP (ENSPSIG00000003615) ART4 (ENSPSIG00000003662) ENSPSIG00000001381 SMCO3 (ENSPSIG00000001390) ENSPSIG00000003674 ENSPSIG00000003689 ENSPSIG00000001405 ENSPSIG00000001368 ENSPSIG00000003742 ##36 ENSPSIG00000001382 #32 ENSPSIG00000003754 #25 ENSPSIG00000001422 ENSPSIG00000001455 ENSPSIG00000001472 ##36 ENSPSIG00000001495 #10 ENSPSIG00000001507 #28 ENSPSIG00000001516 ENSPSIG00000003758 ##36 ENSPSIG00000001532 #37 ENSPSIG00000001543 ENSPSIG00000001580 ENSPSIG00000001592 H4C4 (ENSPSIG00000001606) ENSPSIG00000001616 #25 ENSPSIG00000001626 ENSPSIG00000001644 ##36 Testudinoidea ANCESTRAL SPECIES 4 ENSGT00530000066362 ENSGT01030000234601.c.a.b ENSGT00940000171081 ENSGT00390000013440.e ENSGT01100000263840 ENSGT01070000253822.D.a.n.a ENSGT00940000153118.db.a.a.b.a.a.a.b.b ENSGT01100000263474.a.b.b.j.a.b.a.a ##36 ENSGT01100000263559.B #32 ENSGT01100000263506.a #14 ENSGT00940000153118.db.a.a.b.a.a.a.b.a.a ENSGT01100000263474.a.b.b.j.b.b.b.a.b ##36 ENSGT01100000263504.a.b.b.b.a.a ENSGT01100000263474.a.b.b.k ##36 ENSGT00940000153092.a.a ENSGT01100000263559.A.f #25 ENSGT01060000248528.b.jh.a.b ENSGT01060000248528.b.jh.b ENSGT01060000248528.b.kh ENSGT01100000263474.a.b.a.d #36 ENSGT00940000156302.fc ENSGT00940000155501.b.i.a.a ENSGT01100000263515.a.b.a.b.a.c ENSGT01030000234599.a.b ENSGT00940000155774.b ENSGT00950000182961.a.b.b ENSGT00940000160320 ENSGT00410000026495.B ENSGT00530000063694.b ENSGT01050000244814.a.a.a.b ENSGT00950000182696.A.a Testudinidae ANCESTRAL SPECIES ENSGT01030000234582.f.a.b ENSGT00390000012877 ENSGT00940000158413 ENSGT00530000063516.a.a ENSGT00390000009554 ENSGT00940000160984 ENSGT00940000153118.db.a.a.b.a.a.a.b.a.b.b ENSGT01100000263474.a.b.b.j.a.b.a.a ##36 ENSGT01100000263559.B #32 ENSGT01060000248528.b.kh ENSGT01100000263504.a.b.b.b.b ENSGT01100000263474.a.b.b.j.b.b.b.a.b ##36 ENSGT01100000263504.a.b.b.b.a.a ENSGT01100000263474.a.b.b.k ##36 ENSGT00940000153092.a.a ENSGT01100000263559.A.f #25 ENSGT01060000248528.b.jh.a.b ENSGT00730000110920.a ENSGT00940000156536 ENSGT00390000009497 ENSGT00940000155350 ENSGT00940000156251 ENSGT00950000182988.a.b.a.u ENSGT00530000063816.c ENSGT00390000010063 ENSGT00530000064411 ENSGT00390000011958 ENSGT00390000010128 ENSGT00940000160762 ENSGT00500000044890.a.b ENSGT00390000010352 Goode s thornscrub tortoise DUPLICATION Goode s thornscrub tortoise MODERN SPECIES 138 ENSGEVG00005018449 ENSGEVG00005018436 ENSGEVG00005018429 RBM3 (ENSGEVG00005018414) ENSGEVG00005018387 ENSGEVG00005018361 ENSGEVG00005018301 ENSGEVG00005018256 ENSGEVG00005018236 ##36 ENSGEVG00005018223 ENSGEVG00005018215 ##36 ENSGEVG00005018201 ENSGEVG00005018189 #25 ENSGEVG00005018179 ENSGEVG00005018172 ENSGEVG00005018164 ENSGEVG00005018157 #25 ENSGEVG00005018146 ENSGEVG00005018137 ##36 ENSGEVG00005018127 ENSGEVG00005018110 ##36 ENSGEVG00005018094 JOSD2 (ENSGEVG00005018081) ASPDH (ENSGEVG00005018037) LRRC4B (ENSGEVG00005018015) SYT3 (ENSGEVG00005017928) SHANK1 (ENSGEVG00005017819) ENSGEVG00005017747 Goode s thornscrub tortoise MODERN SPECIES ENSGEVG00005001968 ENSGEVG00005001974 ENSGEVG00005001976 ENSGEVG00005001980 ENSGEVG00005001990 ENSGEVG00005001996 #37 ENSGEVG00005002003 ##36 ENSGEVG00005002008 ENSGEVG00005002016 ENSGEVG00005002022 ENSGEVG00005002024 ENSGEVG00005002035 ##36 ENSGEVG00005002040 ENSGEVG00005002051 ENSGEVG00005002062 #35 H3-7 (ENSGEVG00005002073) #25 ENSGEVG00005002080 ENSGEVG00005002084 ##36 ENSGEVG00005002093 ENSGEVG00005002102 ##31 ENSGEVG00005002114 ENSGEVG00005002128 SMCO3 (ENSGEVG00005002142) ENSGEVG00005002148 ART4 (ENSGEVG00005002154) MGP (ENSGEVG00005002160) ERP27 (ENSGEVG00005002167) ARHGDIB (ENSGEVG00005002177) PDE6H (ENSGEVG00005002188) AGBL3 (ENSGEVG00005002200) TMEM140 (ENSGEVG00005002212) Goode s thornscrub tortoise MODERN SPECIES 138 SPIB (ENSGEVG00005015372) MYBPC2 (ENSGEVG00005015625) EMC10 (ENSGEVG00005017669) ENSGEVG00005017732 ENSGEVG00005017747 SHANK1 (ENSGEVG00005017819) SYT3 (ENSGEVG00005017928) LRRC4B (ENSGEVG00005018015) ASPDH (ENSGEVG00005018037) JOSD2 (ENSGEVG00005018081) ENSGEVG00005018094 ENSGEVG00005018110 ##36 ENSGEVG00005018127 ENSGEVG00005018137 ##36 ENSGEVG00005018146 ENSGEVG00005018157 #25 ENSGEVG00005018164 ENSGEVG00005018172 ENSGEVG00005018179 ENSGEVG00005018189 #25 ENSGEVG00005018201 ENSGEVG00005018215 ##36 ENSGEVG00005018223 ENSGEVG00005018236 ##36 ENSGEVG00005018256 ENSGEVG00005018301 ENSGEVG00005018361 ENSGEVG00005018387 RBM3 (ENSGEVG00005018414) ENSGEVG00005018429 ENSGEVG00005018436 Emydidae ANCESTRAL SPECIES 162 ENSGT01100000263504.a.b.b.b.b ENSGT01100000263474.a.b.b.j.a.b.b ##36 ENSGT01100000263559.A.f #25 ENSGT01100000263474.a.b.b.j.b.a ##36 ENSGT01100000263567.a.a #35 ENSGT01060000248528.b.kh ENSGT01060000248528.b.jh.b painted turtle MODERN SPECIES 888 ENSCPBG00000021033 ENSCPBG00000021028 ##36 ENSCPBG00000021027 #37 ENSCPBG00000021025 ENSCPBG00000021023 ENSCPBG00000021017 ENSCPBG00000021015 ENSCPBG00000021013 ENSCPBG00000021011 ENSCPBG00000021010 ENSCPBG00000021009 ENSCPBG00000021004 ##36 ENSCPBG00000021002 ENSCPBG00000021000 ENSCPBG00000020997 ##36 ENSCPBG00000020993 #25 ENSCPBG00000020988 ##36 ENSCPBG00000020976 #35 ENSCPBG00000020974 ##36 ENSCPBG00000020972 APOLD1 (ENSCPBG00000020970) ENSCPBG00000020967 ENSCPBG00000020965 HEBP1 (ENSCPBG00000020964) ENSCPBG00000020961 FAM234B (ENSCPBG00000020960) GSG1 (ENSCPBG00000020959) EMP1 (ENSCPBG00000020957) GRIN2B (ENSCPBG00000020951) ATF7IP (ENSCPBG00000020944) PLBD1 (ENSCPBG00000020939) Three-toed box turtle DUPLICATION Three-toed box turtle DUPLICATION Three-toed box turtle MODERN SPECIES 28 ENSTMTG00000000281 ENSTMTG00000000293 ENSTMTG00000000303 ENSTMTG00000000311 ENSTMTG00000000321 ENSTMTG00000000337 ENSTMTG00000000347 H2AC7 (ENSTMTG00000000360) ENSTMTG00000000374 ##36 ENSTMTG00000000387 ENSTMTG00000000420 ENSTMTG00000000438 ##36 ENSTMTG00000000446 #32 ENSTMTG00000000461 #14 ENSTMTG00000000472 ENSTMTG00000000484 #25 ENSTMTG00000000494 ##36 ENSTMTG00000000502 APOLD1 (ENSTMTG00000000521) DDX47 (ENSTMTG00000000534) ENSTMTG00000000551 HEBP1 (ENSTMTG00000000561) FAM234B (ENSTMTG00000000579) GSG1 (ENSTMTG00000000615) EMP1 (ENSTMTG00000000648) GRIN2B (ENSTMTG00000000660) ATF7IP (ENSTMTG00000000701) PLBD1 (ENSTMTG00000000759) Three-toed box turtle MODERN SPECIES 28 ENSTMTG00000000337 ENSTMTG00000000321 ENSTMTG00000000311 ENSTMTG00000000303 ENSTMTG00000000293 ENSTMTG00000000281 ENSTMTG00000000270 #25 ENSTMTG00000000247 ENSTMTG00000000236 ##36 ENSTMTG00000000228 ENSTMTG00000000222 #32 ENSTMTG00000000214 ##36 ENSTMTG00000000207 ENSTMTG00000000178 ENSTMTG00000000169 #25 ENSTMTG00000000153 #25 ENSTMTG00000000146 ENSTMTG00000000091 ##36 ENSTMTG00000000081 ENSTMTG00000000055 ENSTMTG00000007937 ENSTMTG00000007917 SMCO3 (ENSTMTG00000007909) ART4 (ENSTMTG00000007900) ERP27 (ENSTMTG00000007875) ARHGDIB (ENSTMTG00000007864) PDE6H (ENSTMTG00000007846) AGBL3 (ENSTMTG00000007802) TMEM140 (ENSTMTG00000007776) ENSTMTG00000007746 WDR91 (ENSTMTG00000007681) Three-toed box turtle MODERN SPECIES 28 ENSTMTG00000007917 ENSTMTG00000007937 ENSTMTG00000000055 ENSTMTG00000000081 ENSTMTG00000000091 ##36 ENSTMTG00000000146 ENSTMTG00000000153 #25 ENSTMTG00000000169 #25 ENSTMTG00000000178 ENSTMTG00000000207 ENSTMTG00000000214 ##36 ENSTMTG00000000222 #32 ENSTMTG00000000228 ENSTMTG00000000236 ##36 ENSTMTG00000000247 ENSTMTG00000000270 #25 ENSTMTG00000000281 ENSTMTG00000000293 ENSTMTG00000000303 ENSTMTG00000000311 ENSTMTG00000000321 ENSTMTG00000000337 ENSTMTG00000000347 H2AC7 (ENSTMTG00000000360) ENSTMTG00000000374 ##36 ENSTMTG00000000387 ENSTMTG00000000420 ENSTMTG00000000438 ##36 ENSTMTG00000000446 #32 ENSTMTG00000000461 #14 ENSTMTG00000000472 Three-toed box turtle MODERN SPECIES 289 LRRC4B (ENSTMTG00000011606) ENSTMTG00000011597 ENSTMTG00000011581 #25 ENSTMTG00000011570 ENSTMTG00000011564 ENSTMTG00000011555 ENSTMTG00000011542 ENSTMTG00000011529 RBM3 (ENSTMTG00000011513) ENSTMTG00000011497 Three-toed box turtle MODERN SPECIES 28 ENSTMTG00000007746 TMEM140 (ENSTMTG00000007776) AGBL3 (ENSTMTG00000007802) PDE6H (ENSTMTG00000007846) ARHGDIB (ENSTMTG00000007864) ERP27 (ENSTMTG00000007875) ART4 (ENSTMTG00000007900) SMCO3 (ENSTMTG00000007909) ENSTMTG00000007917 ENSTMTG00000007937 ENSTMTG00000000055 ENSTMTG00000000081 ENSTMTG00000000091 ##36 ENSTMTG00000000146 ENSTMTG00000000153 #25 ENSTMTG00000000169 #25 ENSTMTG00000000178 ENSTMTG00000000207 ENSTMTG00000000214 ##36 ENSTMTG00000000222 #32 ENSTMTG00000000228 ENSTMTG00000000236 ##36 ENSTMTG00000000247 ENSTMTG00000000270 #25 ENSTMTG00000000281 ENSTMTG00000000293 ENSTMTG00000000303 ENSTMTG00000000311 ENSTMTG00000000321 ENSTMTG00000000337 ENSTMTG00000000347 Archosauria ANCESTRAL SPECIES 257 ENSGT01100000263559.A.f #25 ENSGT00990000203553.c.a.a.b.a.a.a.a ##28 Aves ANCESTRAL SPECIES 247 ENSGT01100000263559.A.f #25 ENSGT00990000203553.c.a.a.b.a.a.a.a ##28 Neognathae ANCESTRAL SPECIES 211 ENSGT01100000263559.A.f #25 ENSGT00990000203553.c.a.a.b.a.a.a.a ##28 Neognathae_b ANCESTRAL SPECIES 177 ENSGT01100000263559.A.f #25 ENSGT00990000203553.c.a.a.b.a.a.a.a ##28 Passeriformes ANCESTRAL SPECIES 210 ENSGT01100000263559.A.f #25 ENSGT00990000203553.c.a.a.b.a.a.a.a ##28 Passeriformes_d ANCESTRAL SPECIES 111 ENSGT01100000263559.A.f #25 ENSGT00990000203553.c.a.a.b.a.a.a.a ##28 ENSGT01100000263474.a.b.b.j.b.a ##36 ENSGT01060000248528.b.jh.b Flycatcher MODERN SPECIES 224 ENSFALG00000024698 #25 Passeriformes_g ANCESTRAL SPECIES 121 ENSGT01100000263559.A.f #25 ENSGT00990000203553.c.a.a.b.a.a.a.a ##28 ENSGT01100000263474.a.b.b.j.b.a ##36 ENSGT01060000248528.b.jh.b Passeroidea ANCESTRAL SPECIES 154 ENSGT01100000263559.A.f #25 ENSGT00990000203553.c.a.a.b.a.a.a.a ##28 ENSGT01100000263474.a.b.b.j.b.a ##36 Common canary MODERN SPECIES 6 ENSSCAG00000006423 ##36 ENSSCAG00000006427 ENSSCAG00000006440 ENSSCAG00000006442 ##31 ENSSCAG00000006445 ENSSCAG00000006448 ENSSCAG00000006451 ENSSCAG00000006453 ##36 ENSSCAG00000006454 ENSSCAG00000006459 ENSSCAG00000006460 ENSSCAG00000006463 #32 ENSSCAG00000006467 ENSSCAG00000006472 ENSSCAG00000006475 ##36 ENSSCAG00000006478 #25 ENSSCAG00000006480 ##28 ENSSCAG00000006483 ##36 ENSSCAG00000006487 ENSSCAG00000006488 ##36 ENSSCAG00000006490 ENSSCAG00000006495 SMCO3 (ENSSCAG00000006501) ART4 (ENSSCAG00000006506) ENSSCAG00000006509 MGP (ENSSCAG00000006513) ERP27 (ENSSCAG00000006517) ARHGDIB (ENSSCAG00000006523) PDE6H (ENSSCAG00000006530) TMEM140 (ENSSCAG00000006537) WDR91 (ENSSCAG00000006558) Zebra finch MODERN SPECIES 11 FAM234B (ENSTGUG00000009424) ENSTGUG00000022523 HEBP1 (ENSTGUG00000022626) ENSTGUG00000009414 DDX47 (ENSTGUG00000009385) ENSTGUG00000027005 ENSTGUG00000021922 ENSTGUG00000022164 ENSTGUG00000028919 ENSTGUG00000025908 #32 ENSTGUG00000026778 ##36 ENSTGUG00000024417 ENSTGUG00000024227 ##36 ENSTGUG00000023762 ENSTGUG00000024041 ENSTGUG00000029262 #25 ENSTGUG00000026411 ENSTGUG00000024300 ENSTGUG00000027107 ENSTGUG00000009332 #37 ENSTGUG00000021685 ENSTGUG00000025029 ENSTGUG00000018918 ENSTGUG00000025906 ENSTGUG00000023259 ##36 ENSTGUG00000022258 ENSTGUG00000023920 ENSTGUG00000023520 ##36 ENSTGUG00000009277 #37 ENSTGUG00000022240 ENSTGUG00000009249 Neognathae_c ANCESTRAL SPECIES ENSGT01100000263559.A.f #25 Kakapo DUPLICATION Kakapo MODERN SPECIES 20 ARHGDIB (ENSSHBG00005010432) ERP27 (ENSSHBG00005010409) MGP (ENSSHBG00005000213) ENSSHBG00005000211 ART4 (ENSSHBG00005000208) ENSSHBG00005000203 SMCO3 (ENSSHBG00005000201) ENSSHBG00005000190 ENSSHBG00005000181 ENSSHBG00005000174 #37 ENSSHBG00005000169 ENSSHBG00005000166 ENSSHBG00005000152 ENSSHBG00005000138 #37 ENSSHBG00005000132 ##36 ENSSHBG00005000128 #25 ENSSHBG00005000124 #25 ENSSHBG00005000112 ##36 ENSSHBG00005000106 ENSSHBG00005000100 #37 APOLD1 (ENSSHBG00005004573) DDX47 (ENSSHBG00005004553) ENSSHBG00005004539 HEBP1 (ENSSHBG00005004532) ENSSHBG00005004526 FAM234B (ENSSHBG00005004516) GSG1 (ENSSHBG00005004506) EMP1 (ENSSHBG00005004500) GRIN2B (ENSSHBG00005004499) ATF7IP (ENSSHBG00005004489) PLBD1 (ENSSHBG00005004479) Kakapo MODERN SPECIES 20 GUCY2C (ENSSHBG00005004465) PLBD1 (ENSSHBG00005004479) ATF7IP (ENSSHBG00005004489) GRIN2B (ENSSHBG00005004499) EMP1 (ENSSHBG00005004500) GSG1 (ENSSHBG00005004506) FAM234B (ENSSHBG00005004516) ENSSHBG00005004526 HEBP1 (ENSSHBG00005004532) ENSSHBG00005004539 DDX47 (ENSSHBG00005004553) APOLD1 (ENSSHBG00005004573) ENSSHBG00005000100 #37 ENSSHBG00005000106 ENSSHBG00005000112 ##36 ENSSHBG00005000124 #25 ENSSHBG00005000128 #25 ENSSHBG00005000132 ##36 ENSSHBG00005000138 #37 ENSSHBG00005000152 ENSSHBG00005000166 ENSSHBG00005000169 ENSSHBG00005000174 #37 ENSSHBG00005000181 ENSSHBG00005000190 SMCO3 (ENSSHBG00005000201) ENSSHBG00005000203 ART4 (ENSSHBG00005000208) ENSSHBG00005000211 MGP (ENSSHBG00005000213) ERP27 (ENSSHBG00005010409) Galloanserae ANCESTRAL SPECIES 69 ENSGT01100000263559.A.f #25 ENSGT01100000263474.a.b.b.j.b.a ##36 ENSGT01060000248528.b.jh.a.a.b ENSGT00940000153118.db.a.a.b.a.a.a.a ENSGT01100000263474.a.b.b.j.b.b.b.b.b.a.a.b ##36 ENSGT00950000183089.s.a.a.b.b.a.a #37 ENSGT01100000263559.B #32 ENSGT01100000263506.a #14 Phasianidae ANCESTRAL SPECIES ENSGT01100000263559.A.f #25 Japanese quail MODERN SPECIES 9 EXOC7 (ENSCJPG00005020759) GALR2 (ENSCJPG00005020798) SRP68 (ENSCJPG00005020799) ENSCJPG00005020800 CDK3 (ENSCJPG00005020801) TEN1 (ENSCJPG00005020805) ACOX1 (ENSCJPG00005020806) FBF1 (ENSCJPG00005020809) MRPL38 (ENSCJPG00005020811) TRIM65 (ENSCJPG00005020812) ENSCJPG00005020813 WBP2 (ENSCJPG00005020814) UNC13D (ENSCJPG00005020815) UNK (ENSCJPG00005020816) ENSCJPG00005020817 ENSCJPG00005020818 #25 GALK1 (ENSCJPG00005020819) ITGB4 (ENSCJPG00005020820) SAP30BP (ENSCJPG00005020873) ENSCJPG00005020874 RECQL5 (ENSCJPG00005020875) SMIM5 (ENSCJPG00005020876) ENSCJPG00005020877 CSNK1D (ENSCJPG00005020878) ENSCJPG00005020879 SLC16A3 (ENSCJPG00005020880) FASN (ENSCJPG00005020907) DUS1L (ENSCJPG00005021069) GPS1 (ENSCJPG00005021070) RFNG (ENSCJPG00005021079) DCXR (ENSCJPG00005021080) Phasianidae_b ANCESTRAL SPECIES 9 ENSGT00940000153118.db.a.a.b.a.a.a.b ENSGT00990000203553.c.a.b #10 ENSGT01100000263559.A.f #25 ENSGT01100000263474.a.b.b.j.b.a ##36 ENSGT00940000153118.db.a.a.b.a.a.a.a ENSGT01100000263474.a.b.b.j.b.b.b.b.b.a.a.b ##36 ENSGT00950000183089.s.a.a.b.b.a.a #37 ENSGT01100000263559.B #32 ENSGT01100000263506.a #14 ENSGT01100000264469 ENSGT00390000013440.e ENSGT01030000234601.c.a.b ENSGT00530000066362 ENSGT00390000003753.b ENSGT00930000151058 ENSGT00390000006233.c.a.b ENSGT00390000013260.C ENSGT00940000160916 Chicken DUPLICATION Chicken MODERN SPECIES TTC26 (ENSGALG00010010913) GUCY2C (ENSGALG00010011323) PLBD1 (ENSGALG00010011231) ATF7IP (ENSGALG00010011144) GRIN2B (ENSGALG00010011090) EMP1 (ENSGALG00010011080) GSG1 (ENSGALG00010011038) FAM234B (ENSGALG00010011027) ENSGALG00010011013 HEBP1 (ENSGALG00010010995) ENSGALG00010009689 DDX47 (ENSGALG00010009672) APOLD1 (ENSGALG00010009659) HIST1H2A4L1 (ENSGALG00010012350) H2B-I (ENSGALG00010012345) ##36 HIST1H3H (ENSGALG00010012338) #25 HIST1H3H (ENSGALG00010013592) #32 ENSGALG00010012331 HIST1H2B5 (ENSGALG00010014375) ##36 ENSGALG00010012324 ENSGALG00010014449 #37 H2B-I (ENSGALG00010011987) ##36 HIST1H101 (ENSGALG00010012144) #37 ENSGALG00010012307 ENSGALG00010012317 ENSGALG00010014431 #37 HIST1H3H (ENSGALG00010012277) #32 HIST1H110 (ENSGALG00010011989) #37 HIST1H2B7 (ENSGALG00010014416) ##36 H2B-VII (ENSGALG00010014403) ##36 HIST1H3H (ENSGALG00010012266) #25 Chicken MODERN SPECIES ENSGALG00010014468 ENSGALG00010012035 PDE6H (ENSGALG00010012048) ARHGDIB (ENSGALG00010012059) ERP27 (ENSGALG00010012069) MGP (ENSGALG00010012083) OC3 (ENSGALG00010012092) ART4 (ENSGALG00010012098) SMCO3 (ENSGALG00010012117) WBP11 (ENSGALG00010012127) HIST1H2A4L1 (ENSGALG00010013579) H2B-I (ENSGALG00010012157) #14 HIST1H3H (ENSGALG00010012169) #32 ENSGALG00010012179 ##28 H2AFJ (ENSGALG00010012248) HIST1H3H (ENSGALG00010012266) #25 H2B-VII (ENSGALG00010014403) ##36 HIST1H2B7 (ENSGALG00010014416) ##36 HIST1H110 (ENSGALG00010011989) #37 HIST1H3H (ENSGALG00010012277) #32 ENSGALG00010014431 #37 ENSGALG00010012317 ENSGALG00010012307 HIST1H101 (ENSGALG00010012144) #37 H2B-I (ENSGALG00010011987) ##36 ENSGALG00010014449 #37 ENSGALG00010012324 HIST1H2B5 (ENSGALG00010014375) ##36 ENSGALG00010012331 HIST1H3H (ENSGALG00010013592) #32 HIST1H3H (ENSGALG00010012338) #25 African ostrich DUPLICATION African ostrich MODERN SPECIES 27 ENSSCUG00000000073 #25 African ostrich MODERN SPECIES 704 STRA8 (ENSSCUG00000015373) WDR91 (ENSSCUG00000015363) ENSSCUG00000015357 ENSSCUG00000015356 PDE6H (ENSSCUG00000015355) ARHGDIB (ENSSCUG00000015350) ERP27 (ENSSCUG00000015344) MGP (ENSSCUG00000015340) ENSSCUG00000015336 ART4 (ENSSCUG00000015333) SMCO3 (ENSSCUG00000015329) ENSSCUG00000015325 ENSSCUG00000015324 ENSSCUG00000015319 ENSSCUG00000015316 ENSSCUG00000015314 #25 ENSSCUG00000015310 ##36 ENSSCUG00000015307 #10 ENSSCUG00000015302 ENSSCUG00000015299 ##36 ENSSCUG00000015296 ENSSCUG00000015293 ##36 ENSSCUG00000015291 #37 ENSSCUG00000015288 ENSSCUG00000015285 ##36 H2AJ (ENSSCUG00000015281) ENSSCUG00000015279 ##36 ENSSCUG00000015276 #25 Actinopterygii ANCESTRAL SPECIES 479 ENSGT01020000230360.d ##31 ENSGT00990000203553.c.a.b #10 ENSGT01100000263514.A.f ENSGT01020000230360.c.b.a.b.a.b ##31 ENSGT01100000263474.a.b.a.a.a.b ##36 ENSGT01100000263559.A #25 ENSGT00990000203553.c.b #28 Neopterygii ANCESTRAL SPECIES 637 ENSGT01100000263474.a.b.a.a.b ##36 ENSGT01100000263559.A #25 ENSGT00990000203553.c.b #28 Osteoglossocephalai ANCESTRAL SPECIES 386 ENSGT00940000160760.b ENSGT00950000182815.a.a.b.h ENSGT00950000183197.b.a.a ENSGT00950000183089.c.b ##37 ENSGT01100000263559.A #25 ENSGT00990000203553.c.b #28 ENSGT00990000203553.c.a.a.b.b.a ##28 ENSGT01020000230360.c.b.a.a.b ##31 Clupeocephala ANCESTRAL SPECIES 589 ENSGT00990000203553.c.a.a.a.a.a ##28 ENSGT01100000263474.a.b.a.b.a.c.b ##36 ENSGT01100000263559.A #25 ENSGT00990000203553.c.a.a.b.b.b ##28 Euteleosteomorpha ANCESTRAL SPECIES 358 ENSGT00990000203553.c.a.a.b.b.a.a.a.a.a.a.b ##28 ENSGT01020000230360.c.b.a.a.a.a.b.b ##31 ENSGT00990000203553.c.a.a.a.b ##28 ENSGT01100000263474.a.b.a.b.a.c.a.b.b.a.a.b.a #8 ENSGT01100000263559.A #25 ENSGT01100000263567.a.a.d.a.b #35 ENSGT00990000203553.c.a.b #10 ENSGT00950000183089.c.b ##37 Acanthomorphata ANCESTRAL SPECIES 231 ENSGT01100000263567.a.b.b ##35 ENSGT00990000203553.c.a.a.b.b.b ##28 ENSGT01100000263504.a.b.b.b.a.b ENSGT01100000263474.a.b.a.b.b.b.a.b.b.a ##36 ENSGT01100000263504.a.b.b.b.b ENSGT01100000263559.A #25 ENSGT01020000230360.c.b.a.a.a.a.b.a.a.a.b.b ##31 ENSGT00990000203553.c.a.a.a.a.b #26 ENSGT01100000263474.a.b.b.o.a.a ##36 ENSGT00950000183089.c.a #37 ENSGT01100000263474.a.b.a.b.a.d ##36 ENSGT00990000203553.c.a.a.b.a.a.a.a.b ##28 ENSGT01100000263504.a.b.b.b.a.a ENSGT01100000263474.a.b.b.o.b ##36 ENSGT01100000263559.B #32 ENSGT00940000153092 Cod MODERN SPECIES 11 ENSGMOG00000011605 ENSGMOG00000011599 ENSGMOG00000022808 ENSGMOG00000033872 ENSGMOG00000012967 zgc:158403 (ENSGMOG00000012969) tspan35 (ENSGMOG00000002253) ENSGMOG00000025526 ENSGMOG00000023806 epor (ENSGMOG00000035420) rab3db (ENSGMOG00000023041) tmem205 (ENSGMOG00000002139) ENSGMOG00000031065 ENSGMOG00000035332 ##31 ENSGMOG00000022765 #26 ENSGMOG00000023392 #25 ENSGMOG00000028355 ##36 ENSGMOG00000025094 ##31 ENSGMOG00000035546 grapa (ENSGMOG00000036359) EPN2 (ENSGMOG00000013954) b9d1 (ENSGMOG00000013934) ENSGMOG00000026424 ENSGMOG00000011584 ENSGMOG00000020230 ENSGMOG00000018733 PCYT2 (ENSGMOG00000018719) MAFG (ENSGMOG00000013099) ENSGMOG00000035688 ENSGMOG00000018707 MYADML2 (ENSGMOG00000016753) Euacanthomorphacea ANCESTRAL SPECIES 136 ENSGT01020000230360.c.b.a.b.b.d.a.a ##31 ENSGT01100000263504.a.b.b.b.b ENSGT01100000263559.A #25 ENSGT01020000230360.c.b.a.a.a.a.b.a.a.a.b.b ##31 ENSGT00990000203553.c.a.a.a.a.b #26 ENSGT01100000263474.a.b.b.o.a.a ##36 ENSGT00950000183089.c.a.k.a #37 ENSGT00990000203553.c.a.a.b.a.a.a.a.b ##28 ENSGT01100000263504.a.b.b.b.a.a ENSGT01100000263474.a.b.b.o.b ##36 ENSGT01100000263559.B #32 ENSGT00940000153092 Percomorphaceae ANCESTRAL SPECIES 146 ENSGT00990000203553.c.a.a.b.a.a.b.b ##28 ENSGT01100000263504.a.b.b.b.b ENSGT01100000263559.A #25 ENSGT00950000183089.c.a.k.b.a.a #37 ENSGT00990000203553.c.a.a.a.a.a ##28 ENSGT01020000230360.c.b.a.b.b.d.b.a.a ##31 Tiger tail seahorse MODERN SPECIES 281 pappaa (ENSHCOG00000003050) znf618 (ENSHCOG00000003019) rgs3a (ENSHCOG00000002999) rabepk (ENSHCOG00000002992) hspa5 (ENSHCOG00000002983) ENSHCOG00000002970 ENSHCOG00000002963 ENSHCOG00000002950 dnm1a (ENSHCOG00000002942) ENSHCOG00000002919 bbln (ENSHCOG00000002909) surf2 (ENSHCOG00000002899) ENSHCOG00000002892 ##31 zgc:113984 (ENSHCOG00000002850) #25 ENSHCOG00000002801 ENSHCOG00000002757 #37 ENSHCOG00000002733 ##31 ENSHCOG00000002722 ##35 ENSHCOG00000002708 #37 ENSHCOG00000002699 ##31 CEL (ENSHCOG00000002697) grin1a (ENSHCOG00000002688) ENTPD2 (ENSHCOG00000002661) phpt1 (ENSHCOG00000002621) ENSHCOG00000002609 glulc (ENSHCOG00000002588) ARRDC1 (ENSHCOG00000002581) slc31a2 (ENSHCOG00000002571) NARS1 (ENSHCOG00000002552) Percomorphaceae_B ANCESTRAL SPECIES 48 ENSGT00990000203553.c.a.a.b.a.a.b.b ##28 ENSGT01100000263504.a.b.b.b.b.y ENSGT01100000263559.A #25 ENSGT00950000183089.c.a.k.b.a.a #37 ENSGT00990000203553.c.a.a.a.a.a ##28 ENSGT01020000230360.c.b.a.b.b.d.b.a.a ##31 Percomorphaceae_C ANCESTRAL SPECIES 31 ENSGT01100000263569.a.b.a.b.a.a ENSGT01100000263504.a.b.b.b.b.y ENSGT01100000263559.A #25 ENSGT01100000263474.a.b.b.o.a.a.c.a ##36 ENSGT00950000183089.c.a.k.a #37 ENSGT00990000203553.c.a.a.b.a.a.a.a.b.n ##28 ENSGT01100000263504.a.b.b.b.a.a.bb.b ENSGT01100000263474.a.b.b.o.b.b ##36 ENSGT01100000263514.A.f.w.b ENSGT01020000230360.c.b.a.b.a.b.c.b.b.b ##31 Percomorphaceae_D ANCESTRAL SPECIES ENSGT01100000263559.A #25 Carangaria ANCESTRAL SPECIES ENSGT01100000263559.A #25 Carangaria_A ANCESTRAL SPECIES ENSGT01100000263559.A #25 Seriola ANCESTRAL SPECIES ENSGT01100000263559.A #25 Yellowtail amberjack MODERN SPECIES 2962 ATP8A2 (ENSSLDG00000003891) SHISA2 (ENSSLDG00000003874) spice1 (ENSSLDG00000003858) boc (ENSSLDG00000003818) USF3 (ENSSLDG00000003795) naa50 (ENSSLDG00000003753) ATP6V1A (ENSSLDG00000003688) GRAMD1C (ENSSLDG00000003657) zdhhc23b (ENSSLDG00000003636) ccdc191 (ENSSLDG00000003578) qtrt2 (ENSSLDG00000003543) drd3 (ENSSLDG00000003527) ENSSLDG00000003496 ENSSLDG00000003226 ENSSLDG00000003017 ##31 ENSSLDG00000002986 #25 ENSSLDG00000002909 ##28 ENSSLDG00000002878 ENSSLDG00000002857 ##31 ENSSLDG00000002782 #37 ENSSLDG00000002715 ##28 ENSSLDG00000002536 ENSSLDG00000002431 ##31 ENSSLDG00000002350 ##36 ENSSLDG00000002286 ##28 ENSSLDG00000002265 #37 ENSSLDG00000002111 ##31 Eupercaria ANCESTRAL SPECIES 47 ENSGT01100000263569.a.b.a.b.a.a ENSGT01100000263504.a.b.b.b.b.y ENSGT01100000263559.A #25 ENSGT01100000263474.a.b.b.o.a.a.c.a ##36 ENSGT00950000183089.c.a.k.a #37 ENSGT01100000263474.a.b.b.o.a.a.d ##36 ENSGT01060000248528.b ENSGT01100000263567.a.b.b ##35 ENSGT00990000203553.c.a.a.b.b.b ##28 Eupecaria_A ANCESTRAL SPECIES 45 ENSGT01100000263559.A #25 ENSGT01100000263474.a.b.b.o.a.a.c.a ##36 ENSGT00950000183089.c.a.k.a #37 ENSGT01100000263474.a.b.b.o.a.a.d ##36 ENSGT01060000248528.b ENSGT01100000263567.a.b.b ##35 ENSGT00990000203553.c.a.a.b.b.b ##28 Eupecaria_B ANCESTRAL SPECIES 44 ENSGT01100000263559.A #25 ENSGT01100000263474.a.b.b.o.a.a.c.a ##36 ENSGT00950000183089.c.a.k.a #37 ENSGT01100000263474.a.b.b.o.a.a.d ##36 ENSGT01060000248528.b ENSGT01100000263567.a.b.b ##35 ENSGT00990000203553.c.a.a.b.b.b ##28 Eupecaria_C ANCESTRAL SPECIES 14 ENSGT01100000263474.a.b.b.o.a.a.c.b.a ##36 ENSGT01100000263506.a.d #14 ENSGT01100000263474.a.b.b.o.a.a.d ##36 ENSGT01060000248528.b ENSGT01100000263474.a.b.b.o.a.a.c.a ##36 ENSGT00950000183089.c.a.k.a #37 ENSGT01100000263559.A #25 ENSGT00550000075117.m.a ENSGT00940000163460.b ENSGT00390000000159 ENSGT00940000155858.f ENSGT00940000155159.C ENSGT00940000155004.s ENSGT00940000157864.a.a ENSGT00940000160755 ENSGT00390000015579.a.a.a ENSGT00940000159027 ENSGT00940000157287 ENSGT00390000017589 ENSGT00940000153578.A.f ENSGT00390000011856 ENSGT00940000153759.a.b Eupercaria_incertae_sedis ANCESTRAL SPECIES 135 ENSGT01100000263474.a.b.b.o.a.a.c.b.b ##36 ENSGT00950000183089.c.a.k.a #37 ENSGT01100000263559.A #25 European seabass MODERN SPECIES 20 ENSDLAG00005020069 ENSDLAG00005020239 ENSDLAG00005020523 ENSDLAG00005030147 ENSDLAG00005020533 ENSDLAG00005031944 ENSDLAG00005020618 ENSDLAG00005011310 ENSDLAG00005027683 ENSDLAG00005033228 ENSDLAG00005030474 ENSDLAG00005003701 ##31 ENSDLAG00005008327 #37 ENSDLAG00005026635 ##28 ENSDLAG00005029157 #37 ENSDLAG00005033675 #25 ENSDLAG00005028741 ENSDLAG00005006818 ENSDLAG00005029616 ENSDLAG00005033819 ##28 ENSDLAG00005027654 ##36 ENSDLAG00005034704 ENSDLAG00005020626 ENSDLAG00005020639 ENSDLAG00005021120 srp68 (ENSDLAG00005021131) evpla (ENSDLAG00005021372) ten1 (ENSDLAG00005034984) acox1 (ENSDLAG00005021462) RHBDF2 (ENSDLAG00005021517) aanat1 (ENSDLAG00005021664) Large yellow croaker DUPLICATION Large yellow croaker MODERN SPECIES 481 PKN1 (ENSLCRG00005010875) map2k7 (ENSLCRG00005010593) myh9a (ENSLCRG00005009088) ENSLCRG00005009062 #25 ENSLCRG00005009059 ##31 ENSLCRG00005009057 #37 ENSLCRG00005009044 ##36 ENSLCRG00005009042 ##28 ENSLCRG00005009041 ##31 ENSLCRG00005009040 ENSLCRG00005009039 ##28 ENSLCRG00005009038 ##36 ENSLCRG00005009034 ##28 ENSLCRG00005009033 ##36 ENSLCRG00005009032 #37 ENSLCRG00005009031 #25 ENSLCRG00005009029 ##36 ENSLCRG00005009028 ##28 ENSLCRG00005009023 ENSLCRG00005009020 ENSLCRG00005009018 ENSLCRG00005009016 DDX5 (ENSLCRG00005008160) POLG2 (ENSLCRG00005008140) srp68 (ENSLCRG00005007813) evpla (ENSLCRG00005007792) ten1 (ENSLCRG00005007788) acox1 (ENSLCRG00005004566) RHBDF2 (ENSLCRG00005003314) aanat1 (ENSLCRG00005003294) UBE2O (ENSLCRG00005002453) Large yellow croaker MODERN SPECIES 481 ENSLCRG00005009023 ENSLCRG00005009028 ##28 ENSLCRG00005009029 ##36 ENSLCRG00005009031 #25 ENSLCRG00005009032 #37 ENSLCRG00005009033 ##36 ENSLCRG00005009034 ##28 ENSLCRG00005009038 ##36 ENSLCRG00005009039 ##28 ENSLCRG00005009040 ENSLCRG00005009041 ##31 ENSLCRG00005009042 ##28 ENSLCRG00005009044 ##36 ENSLCRG00005009057 #37 ENSLCRG00005009059 ##31 ENSLCRG00005009062 #25 myh9a (ENSLCRG00005009088) map2k7 (ENSLCRG00005010593) PKN1 (ENSLCRG00005010875) si:ch211-214c7.5 (ENSLCRG00005011064) ENSLCRG00005011065 mcoln1a (ENSLCRG00005011086) trappc5 (ENSLCRG00005012967) pglyrp2 (ENSLCRG00005012973) ENSLCRG00005012974 ENSLCRG00005012975 ENSLCRG00005012976 g-lysozyme (ENSLCRG00005012977) ENSLCRG00005012978 EVI5L (ENSLCRG00005012983) DDX39A (ENSLCRG00005014382) Tetraodontidae ANCESTRAL SPECIES 196 ENSGT01100000263569.a.b.a.b.a.a ENSGT01100000263504.a.b.b.b.b.y ENSGT01100000263559.A #25 ENSGT00950000183089.c.a.k.b.a.a #37 ENSGT01100000263559.B.lf #32 ENSGT01060000248528.b ENSGT01020000230360.c.b.a.a.a.a.b.a.a.a.b.b.c.a ##31 Tetraodon MODERN SPECIES 10 slc2a15b (ENSTNIG00000019369) lbx1b (ENSTNIG00000019368) cenpk (ENSTNIG00000000157) SMAP1 (ENSTNIG00000019367) ENSTNIG00000001746 KRT19 (ENSTNIG00000019366) ENSTNIG00000019365 nsmce1 (ENSTNIG00000019364) vps37a (ENSTNIG00000019363) MICU3 (ENSTNIG00000019362) fgf20a (ENSTNIG00000019361) kpna7 (ENSTNIG00000000879) xpa (ENSTNIG00000019360) kpna7 (ENSTNIG00000000764) slc24a2 (ENSTNIG00000019359) H3-7 (ENSTNIG00000001465) #25 ENSTNIG00000019358 ##31 nansa (ENSTNIG00000018070) clta (ENSTNIG00000018069) gne (ENSTNIG00000018068) cplx2l (ENSTNIG00000018067) TMOD1 (ENSTNIG00000018066) tdrd7a (ENSTNIG00000018065) stra6l (ENSTNIG00000018064) ENSTNIG00000018063 abca1a (ENSTNIG00000018062) SGCZ (ENSTNIG00000018061) tusc3 (ENSTNIG00000018060) ENSTNIG00000018059 ENSTNIG00000018058 ufsp2 (ENSTNIG00000018057) Fugu DUPLICATION Fugu MODERN SPECIES 8 nansa (ENSTRUG00000015552) ENSTRUG00000029500 ENSTRUG00000020802 ENSTRUG00000032005 ENSTRUG00000026537 #32 ENSTRUG00000026851 #37 ENSTRUG00000021312 ##31 ENSTRUG00000032950 #32 ENSTRUG00000024579 ENSTRUG00000032531 ##31 ENSTRUG00000024593 ##35 ENSTRUG00000032916 ENSTRUG00000029122 #19 ENSTRUG00000029643 ENSTRUG00000026986 ENSTRUG00000027124 #25 ENSTRUG00000002689 #37 ENSTRUG00000032970 #25 ENSTRUG00000025869 ENSTRUG00000023039 #37 H3C1 (ENSTRUG00000023777) slc24a2 (ENSTRUG00000015445) xpa (ENSTRUG00000027763) kpna7 (ENSTRUG00000015372) fgf20a (ENSTRUG00000015359) MICU3 (ENSTRUG00000015336) vps37a (ENSTRUG00000015286) nsmce1 (ENSTRUG00000015276) ENSTRUG00000015253 krt94 (ENSTRUG00000015114) SMAP1 (ENSTRUG00000015069) Fugu MODERN SPECIES 8 cenpk (ENSTRUG00000015014) nsmce4a (ENSTRUG00000015029) SMAP1 (ENSTRUG00000015069) krt94 (ENSTRUG00000015114) ENSTRUG00000015253 nsmce1 (ENSTRUG00000015276) vps37a (ENSTRUG00000015286) MICU3 (ENSTRUG00000015336) fgf20a (ENSTRUG00000015359) kpna7 (ENSTRUG00000015372) xpa (ENSTRUG00000027763) slc24a2 (ENSTRUG00000015445) H3C1 (ENSTRUG00000023777) ENSTRUG00000023039 #37 ENSTRUG00000025869 ENSTRUG00000032970 #25 ENSTRUG00000002689 #37 ENSTRUG00000027124 #25 ENSTRUG00000026986 ENSTRUG00000029643 ENSTRUG00000029122 #19 ENSTRUG00000032916 ENSTRUG00000024593 ##35 ENSTRUG00000032531 ##31 ENSTRUG00000024579 ENSTRUG00000032950 #32 ENSTRUG00000021312 ##31 ENSTRUG00000026851 #37 ENSTRUG00000026537 #32 ENSTRUG00000032005 ENSTRUG00000020802 Ovalentaria ANCESTRAL SPECIES 24 ENSGT00940000179738 ENSGT00950000183089.c.b ##37 ENSGT01100000263559.A #25 ENSGT00940000161860 ENSGT00940000158576.a.a ENSGT00940000164299.b.a ENSGT00940000160758 ENSGT00940000161105 ENSGT00440000035348 ENSGT00390000004190 ENSGT00390000006670 ENSGT00940000155911 ENSGT00390000007890 ENSGT00390000015797 ENSGT00390000004933.k.a ENSGT00390000002615 ENSGT00940000169980 ENSGT00940000158990.t Ovalentaria_B ANCESTRAL SPECIES 135 ENSGT00940000179738 ENSGT00950000183089.c.b ##37 ENSGT01100000263559.A #25 Cichlidae ANCESTRAL SPECIES 404 ENSGT01020000230360.c.b.a.b.a.b.c.a.b ##31 ENSGT01100000263559.A #25 Pseudocrenilabrinae ANCESTRAL SPECIES 480 ENSGT01020000230360.c.b.a.b.a.b.c.a.b ##31 ENSGT01100000263559.A #25 Pseudocrenilabrinae_A ANCESTRAL SPECIES 468 ENSGT01020000230360.c.b.a.b.a.b.c.a.b ##31 ENSGT01100000263559.A #25 Lyretail cichlid MODERN SPECIES 291 kcnj8 (ENSNBRG00000013212) ECHDC3 (ENSNBRG00000013230) acot15 (ENSNBRG00000013263) AVPR1A (ENSNBRG00000013319) srgap1b (ENSNBRG00000013523) kics2 (ENSNBRG00000013555) TMEM19 (ENSNBRG00000013564) rab3ip (ENSNBRG00000013590) ENSNBRG00000013615 UPF2 (ENSNBRG00000013629) slc35e3 (ENSNBRG00000013679) nup107 (ENSNBRG00000013724) mdm2 (ENSNBRG00000013973) ENSNBRG00000014005 #37 ENSNBRG00000014015 ##31 ENSNBRG00000014026 #25 ENSNBRG00000014094 #26 ENSNBRG00000014112 ENSNBRG00000014139 ENSNBRG00000014162 ENSNBRG00000014171 dyrk2 (ENSNBRG00000014202) ifng1 (ENSNBRG00000014224) ENSNBRG00000014233 ENSNBRG00000014247 ENSNBRG00000014261 cand1 (ENSNBRG00000014291) grip1 (ENSNBRG00000014378) lsm8 (ENSNBRG00000014441) TYMP (ENSNBRG00000014459) SHANK3 (ENSNBRG00000014507) Haplochromini ANCESTRAL SPECIES 487 ENSGT01020000230360.c.b.a.b.a.b.c.a.b ##31 ENSGT01100000263559.A #25 Haplochromini_A ANCESTRAL SPECIES 447 ENSGT01020000230360.c.b.a.b.a.b.c.a.b ##31 ENSGT01100000263559.A #25 Haplochromini_B ANCESTRAL SPECIES 47 ENSGT00390000003512.r ENSGT00940000156048.e.a.a.a.a ENSGT00390000011529 ENSGT00940000153342.b ENSGT00940000158966 ENSGT01020000231800 ENSGT00390000002789 ENSGT00530000067736 ENSGT01100000264738.a ENSGT00940000166495 ENSGT00390000007529 ENSGT00550000074956 ENSGT00940000157824.i.a ENSGT00940000153408.B.s.b ENSGT00940000158659 ENSGT01100000263559.A #25 ENSGT01100000263514.A.e.a ENSGT01060000248528.b.we.a ENSGT00950000183089.c.a.k.a.sb.a #37 ENSGT00990000203553.c.a.b #10 ENSGT00390000007870.k.b ENSGT00390000012029 ENSGT00940000155345.r ENSGT01100000263601 ENSGT00940000167432 ENSGT00530000063410.a.q.b ENSGT00940000153464.B.z.a ENSGT00390000000583 ENSGT00950000183050.b.b.b.a.a.a.b ENSGT00950000182898.a.a.a.a.a.h ENSGT00940000155337.`b Zebra mbuna DUPLICATION Zebra mbuna MODERN SPECIES 1109 ENSMZEG00005005426 nup133 (ENSMZEG00005005378) taf5l (ENSMZEG00005005370) capn9 (ENSMZEG00005005346) ENSMZEG00005005327 ltv1 (ENSMZEG00005005315) ifngr1 (ENSMZEG00005005285) ENSMZEG00005005275 ENSMZEG00005005260 ENSMZEG00005005230 pus10 (ENSMZEG00005005211) cct4 (ENSMZEG00005005184) FAM161A (ENSMZEG00005005167) XPO1 (ENSMZEG00005005105) USP34 (ENSMZEG00005005014) ENSMZEG00005004765 #25 ENSMZEG00005004064 ENSMZEG00005003954 ##31 ENSMZEG00005003650 #25 ENSMZEG00005003630 #27 ENSMZEG00005003616 #19 ENSMZEG00005003038 ENSMZEG00005002098 ENSMZEG00005002087 #37 ENSMZEG00005002082 #10 ENSMZEG00005002076 ENSMZEG00005002063 #27 ENSMZEG00005002053 #10 ENSMZEG00005002043 ENSMZEG00005001785 #19 sap30bp (ENSMZEG00005001777) Zebra mbuna MODERN SPECIES 1109 ENSMZEG00005001070 si:dkey-102c8.3 (ENSMZEG00005001077) ENSMZEG00005001101 chchd10 (ENSMZEG00005001153) ddt (ENSMZEG00005001156) gstt1b (ENSMZEG00005001399) gstt1b (ENSMZEG00005001411) ENSMZEG00005001425 ENSMZEG00005001434 ENSMZEG00005001448 b3gnt2a (ENSMZEG00005001456) commd1 (ENSMZEG00005001460) ENSMZEG00005001470 ENSMZEG00005001480 ENSMZEG00005001588 ##31 ENSMZEG00005001598 #25 ENSMZEG00005001686 #37 ENSMZEG00005001692 sap30bp (ENSMZEG00005001777) ENSMZEG00005001785 #19 ENSMZEG00005002043 ENSMZEG00005002053 #10 ENSMZEG00005002063 #27 ENSMZEG00005002076 ENSMZEG00005002082 #10 ENSMZEG00005002087 #37 ENSMZEG00005002098 ENSMZEG00005003038 ENSMZEG00005003616 #19 ENSMZEG00005003630 #27 ENSMZEG00005003650 #25 Zebra mbuna MODERN SPECIES 1109 capn9 (ENSMZEG00005005346) ENSMZEG00005005327 ltv1 (ENSMZEG00005005315) ifngr1 (ENSMZEG00005005285) ENSMZEG00005005275 ENSMZEG00005005260 ENSMZEG00005005230 pus10 (ENSMZEG00005005211) cct4 (ENSMZEG00005005184) FAM161A (ENSMZEG00005005167) XPO1 (ENSMZEG00005005105) USP34 (ENSMZEG00005005014) ENSMZEG00005004765 #25 ENSMZEG00005004064 ENSMZEG00005003954 ##31 ENSMZEG00005003650 #25 ENSMZEG00005003630 #27 ENSMZEG00005003616 #19 ENSMZEG00005003038 ENSMZEG00005002098 ENSMZEG00005002087 #37 ENSMZEG00005002082 #10 ENSMZEG00005002076 ENSMZEG00005002063 #27 ENSMZEG00005002053 #10 ENSMZEG00005002043 ENSMZEG00005001785 #19 sap30bp (ENSMZEG00005001777) ENSMZEG00005001692 ENSMZEG00005001686 #37 ENSMZEG00005001598 #25 Eastern happy DUPLICATION Eastern happy MODERN SPECIES 18 pus10 (ENSACLG00000015870) cct4 (ENSACLG00000015808) ENSACLG00000015802 ENSACLG00000015773 ENSACLG00000015748 XPO1 (ENSACLG00000015669) USP34 (ENSACLG00000015410) ENSACLG00000015308 #25 ENSACLG00000015194 ENSACLG00000015117 ##31 ENSACLG00000015026 ENSACLG00000014987 ENSACLG00000014970 ##36 ENSACLG00000014956 ##31 ENSACLG00000014940 #27 ENSACLG00000014877 #25 ENSACLG00000014860 ENSACLG00000014852 #10 ENSACLG00000014842 ENSACLG00000014834 #10 sap30bp (ENSACLG00000014823) ENSACLG00000014815 #27 ENSACLG00000014801 ENSACLG00000014792 H3C1 (ENSACLG00000014721) ENSACLG00000014709 ##31 ENSACLG00000014587 commd1 (ENSACLG00000014571) b3gnt2a (ENSACLG00000014561) ENSACLG00000014485 ENSACLG00000014463 Eastern happy MODERN SPECIES 18 taf5l (ENSACLG00000016330) capn9 (ENSACLG00000016284) ENSACLG00000016277 ltv1 (ENSACLG00000016248) ENSACLG00000016176 ENSACLG00000016161 ENSACLG00000016143 ENSACLG00000016107 pus10 (ENSACLG00000015870) cct4 (ENSACLG00000015808) ENSACLG00000015802 ENSACLG00000015773 ENSACLG00000015748 XPO1 (ENSACLG00000015669) USP34 (ENSACLG00000015410) ENSACLG00000015308 #25 ENSACLG00000015194 ENSACLG00000015117 ##31 ENSACLG00000015026 ENSACLG00000014987 ENSACLG00000014970 ##36 ENSACLG00000014956 ##31 ENSACLG00000014940 #27 ENSACLG00000014877 #25 ENSACLG00000014860 ENSACLG00000014852 #10 ENSACLG00000014842 ENSACLG00000014834 #10 sap30bp (ENSACLG00000014823) ENSACLG00000014815 #27 ENSACLG00000014801 Pomacentridae ANCESTRAL SPECIES 371 ENSGT00990000203553.c.a.a.b.a.a.a.a.b.n ##28 ENSGT01100000263559.A #25 Pomacentridae_A ANCESTRAL SPECIES 397 ENSGT00990000203553.c.a.a.b.a.a.a.a.b.n ##28 ENSGT01100000263559.A #25 Amphiprion ANCESTRAL SPECIES 424 ENSGT00990000203553.c.a.a.b.a.a.a.a.b.n ##28 ENSGT01100000263559.A #25 Orange clownfish DUPLICATION Orange clownfish DUPLICATION Orange clownfish DUPLICATION Orange clownfish MODERN SPECIES 17 ENSAPEG00000019308 ##31 ENSAPEG00000019321 #37 ENSAPEG00000019330 ENSAPEG00000019340 ENSAPEG00000019367 ENSAPEG00000019386 ENSAPEG00000019396 #10 ENSAPEG00000019488 ##31 ENSAPEG00000019505 ENSAPEG00000019513 ENSAPEG00000019523 ENSAPEG00000019553 ENSAPEG00000019611 ##28 ENSAPEG00000019641 #25 ENSAPEG00000019718 ##28 ENSAPEG00000019864 #25 ENSAPEG00000019940 ##31 ENSAPEG00000019947 ##31 ENSAPEG00000019955 #25 ENSAPEG00000020054 ENSAPEG00000020088 ##28 ENSAPEG00000020120 ##31 ENSAPEG00000020220 #25 ENSAPEG00000020288 ##28 ENSAPEG00000020331 GRIA2 (ENSAPEG00000020344) ENSAPEG00000020400 ENSAPEG00000020417 glrba (ENSAPEG00000020433) ndufs8a (ENSAPEG00000020467) p2rx3b (ENSAPEG00000020485) Orange clownfish MODERN SPECIES 17 slc22a7a (ENSAPEG00000020591) ENSAPEG00000020528 pold4 (ENSAPEG00000020510) p2rx3b (ENSAPEG00000020485) ndufs8a (ENSAPEG00000020467) glrba (ENSAPEG00000020433) ENSAPEG00000020417 ENSAPEG00000020400 GRIA2 (ENSAPEG00000020344) ENSAPEG00000020331 ENSAPEG00000020288 ##28 ENSAPEG00000020220 #25 ENSAPEG00000020120 ##31 ENSAPEG00000020088 ##28 ENSAPEG00000020054 ENSAPEG00000019955 #25 ENSAPEG00000019947 ##31 ENSAPEG00000019940 ##31 ENSAPEG00000019864 #25 ENSAPEG00000019718 ##28 ENSAPEG00000019641 #25 ENSAPEG00000019611 ##28 ENSAPEG00000019553 ENSAPEG00000019523 ENSAPEG00000019513 ENSAPEG00000019505 ENSAPEG00000019488 ##31 ENSAPEG00000019396 #10 ENSAPEG00000019386 ENSAPEG00000019367 ENSAPEG00000019340 Orange clownfish MODERN SPECIES 17 ENSAPEG00000019283 ENSAPEG00000019298 ENSAPEG00000019308 ##31 ENSAPEG00000019321 #37 ENSAPEG00000019330 ENSAPEG00000019340 ENSAPEG00000019367 ENSAPEG00000019386 ENSAPEG00000019396 #10 ENSAPEG00000019488 ##31 ENSAPEG00000019505 ENSAPEG00000019513 ENSAPEG00000019523 ENSAPEG00000019553 ENSAPEG00000019611 ##28 ENSAPEG00000019641 #25 ENSAPEG00000019718 ##28 ENSAPEG00000019864 #25 ENSAPEG00000019940 ##31 ENSAPEG00000019947 ##31 ENSAPEG00000019955 #25 ENSAPEG00000020054 ENSAPEG00000020088 ##28 ENSAPEG00000020120 ##31 ENSAPEG00000020220 #25 ENSAPEG00000020288 ##28 ENSAPEG00000020331 GRIA2 (ENSAPEG00000020344) ENSAPEG00000020400 ENSAPEG00000020417 glrba (ENSAPEG00000020433) Orange clownfish MODERN SPECIES 17 ENSAPEG00000020740 ATL2 (ENSAPEG00000020696) HNRNPLL (ENSAPEG00000020648) ENSAPEG00000020639 slc22a7a (ENSAPEG00000020591) ENSAPEG00000020528 pold4 (ENSAPEG00000020510) p2rx3b (ENSAPEG00000020485) ndufs8a (ENSAPEG00000020467) glrba (ENSAPEG00000020433) ENSAPEG00000020417 ENSAPEG00000020400 GRIA2 (ENSAPEG00000020344) ENSAPEG00000020331 ENSAPEG00000020288 ##28 ENSAPEG00000020220 #25 ENSAPEG00000020120 ##31 ENSAPEG00000020088 ##28 ENSAPEG00000020054 ENSAPEG00000019955 #25 ENSAPEG00000019947 ##31 ENSAPEG00000019940 ##31 ENSAPEG00000019864 #25 ENSAPEG00000019718 ##28 ENSAPEG00000019641 #25 ENSAPEG00000019611 ##28 ENSAPEG00000019553 ENSAPEG00000019523 ENSAPEG00000019513 ENSAPEG00000019505 ENSAPEG00000019488 ##31 Clown anemonefish DUPLICATION Clown anemonefish MODERN SPECIES 1086 ENSAOCG00000007756 pold4 (ENSAOCG00000007770) p2rx3b (ENSAOCG00000007795) ndufs8a (ENSAOCG00000000440) glrba (ENSAOCG00000007864) ENSAOCG00000007886 GRIA2 (ENSAOCG00000007977) ENSAOCG00000008026 ##28 ENSAOCG00000000458 #25 ENSAOCG00000008103 #37 ENSAOCG00000000467 ##35 ENSAOCG00000000470 ENSAOCG00000000477 ENSAOCG00000008242 ENSAOCG00000008280 #37 ENSAOCG00000008392 ##31 H4C5 (ENSAOCG00000008402) Clown anemonefish MODERN SPECIES 2841 ENSAOCG00000015954 ENSAOCG00000016042 ##28 histh1l1 (ENSAOCG00000016071) ##37 ENSAOCG00000016169 #25 calua (ENSAOCG00000002824) opn1sw1 (ENSAOCG00000001112) Atherinomorphae ANCESTRAL SPECIES 124 ENSGT01020000230360.c.b.a.b.a.a.a.a.b ##31 ENSGT00990000203553.c.a.a.b.a.a.a.a.b.n ##28 ENSGT01100000263559.A #25 Oryzias ANCESTRAL SPECIES 221 ENSGT00990000203553.c.a.a.b.a.a.a.a.b.n ##28 ENSGT01100000263559.A #25 Oryzias_b ANCESTRAL SPECIES ENSGT01100000263559.A #25 Javanese ricefish DUPLICATION Javanese ricefish MODERN SPECIES rcor3 (ENSOJAG00000015116) ENSOJAG00000015267 ENSOJAG00000015364 ENSOJAG00000016656 ENSOJAG00000016669 HNRNPLL (ENSOJAG00000016717) slc22a7a (ENSOJAG00000017051) ENSOJAG00000017062 ENSOJAG00000017069 JAG1 (ENSOJAG00000017134) RRP36 (ENSOJAG00000017700) ENSOJAG00000017712 tp53bp2b (ENSOJAG00000017756) gtpbp2b (ENSOJAG00000003655) ENSOJAG00000003702 ##31 ENSOJAG00000003721 #25 ENSOJAG00000003778 si:dkey-23a13.20 (ENSOJAG00000003800) ##31 ENSOJAG00000003845 ENSOJAG00000003966 ENSOJAG00000003989 ENSOJAG00000003995 ENSOJAG00000004003 ENSOJAG00000004022 ##31 zgc:163040 (ENSOJAG00000004049) ENSOJAG00000004060 #37 DDX5 (ENSOJAG00000004468) POLG2 (ENSOJAG00000006845) ENSOJAG00000007145 evpla (ENSOJAG00000007176) ten1 (ENSOJAG00000007194) Javanese ricefish MODERN SPECIES 5 ENSOJAG00000007551 ENSOJAG00000007596 fam53c (ENSOJAG00000007624) ENSOJAG00000007648 slbp2 (ENSOJAG00000007696) zmat2 (ENSOJAG00000007711) ENSOJAG00000007791 ENSOJAG00000007799 nhp2 (ENSOJAG00000007825) ENSOJAG00000007847 ENSOJAG00000007872 ENSOJAG00000007885 ADRA1B (ENSOJAG00000007903) ENSOJAG00000007929 ##31 ENSOJAG00000007941 ENSOJAG00000007954 #25 ENSOJAG00000007980 ENSOJAG00000007994 ##35 ENSOJAG00000008018 #37 dscama (ENSOJAG00000008078) ENSOJAG00000009454 ENSOJAG00000009544 ENSOJAG00000009560 usp25 (ENSOJAG00000009773) WSCD1 (ENSOJAG00000012395) ENSOJAG00000012528 ENSOJAG00000012535 ENSOJAG00000012543 nup98 (ENSOJAG00000012558) ENSOJAG00000012663 ENSOJAG00000012678 Oryzias_a ANCESTRAL SPECIES 2 ENSGT00940000162439 ENSGT00390000003183 ENSGT00390000018434 ENSGT00940000155093.b ENSGT00390000017523 ENSGT01030000234555.a.a.a.c.a ENSGT00940000153592.B.a ENSGT00950000183145.D.i ENSGT01090000260061.c.a.c.a.a.b ENSGT00940000155882.a.a ENSGT00940000162625 ENSGT00940000159210 ENSGT00390000018406 ENSGT00940000156747 ENSGT00990000203553.c.a.a.b.a.a.a.a.b.n ##28 ENSGT01100000263559.A #25 ENSGT00950000183089.c.a.k.b.b.j #37 ENSGT01020000230351.C ENSGT00940000154890.a.a ENSGT00940000174983 ENSGT00940000155668.j ENSGT01060000250877 ENSGT00940000155045 ENSGT00940000160156 ENSGT00940000156179 ENSGT00940000155228 ENSGT00390000005976.a.a.a ENSGT00390000005976.a.a.b ENSGT00390000003917 ENSGT01000000214434.E ENSGT00940000158512.b Japanese Medaka HdrR MODERN SPECIES UBE2O (ENSORLG00000000718) aanat1 (ENSORLG00000000725) RHBDF2 (ENSORLG00000000754) acox1 (ENSORLG00000000785) ten1 (ENSORLG00000000792) evpla (ENSORLG00000000815) ENSORLG00000025993 ENSORLG00000000825 ENSORLG00000000822 srp68 (ENSORLG00000000849) POLG2 (ENSORLG00000000860) DDX5 (ENSORLG00000000866) ENSORLG00000030472 ##28 ENSORLG00000000157 #37 ENSORLG00000023254 ##31 ENSORLG00000001338 #25 gtpbp2b (ENSORLG00000000909) tp53bp2b (ENSORLG00000000954) rrp36 (ENSORLG00000029500) ENSORLG00000000972 ENSORLG00000030418 ENSORLG00000025624 slc22a7a (ENSORLG00000000981) HNRNPLL (ENSORLG00000001005) ENSORLG00000001049 ENSORLG00000001076 ENSORLG00000001087 ENSORLG00000001109 rcor3 (ENSORLG00000001117) ENSORLG00000001160 ENSORLG00000022684 #37 Chinese medaka MODERN SPECIES 1129 CENPV (ENSOSIG00000022092) pigl (ENSOSIG00000022090) ncor1 (ENSOSIG00000022073) zswim7 (ENSOSIG00000022055) adora2b (ENSOSIG00000022048) SPECC1 (ENSOSIG00000022044) ENSOSIG00000022020 YWHAG (ENSOSIG00000022008) hspb1 (ENSOSIG00000022005) ENSOSIG00000022004 ENSOSIG00000021997 c1qbp (ENSOSIG00000021992) dhx33 (ENSOSIG00000021988) ENSOSIG00000021976 ENSOSIG00000021975 ##28 ENSOSIG00000021972 #25 ENSOSIG00000021969 #37 p2rx1 (ENSOSIG00000021966) camkk1a (ENSOSIG00000021963) ENSOSIG00000021956 ATP2A3 (ENSOSIG00000020170) ZZEF1 (ENSOSIG00000019949) cyb5d2 (ENSOSIG00000019925) ankfy1 (ENSOSIG00000019919) ube2g1a (ENSOSIG00000019900) spns3 (ENSOSIG00000019886) SPNS2 (ENSOSIG00000019300) emc6 (ENSOSIG00000019248) SHPK (ENSOSIG00000019245) trpv1 (ENSOSIG00000019243) fam222ba (ENSOSIG00000019238) Cyprinodontiformes ANCESTRAL SPECIES ENSGT01100000263559.A #25 Aplocheiloidei ANCESTRAL SPECIES ENSGT01100000263559.A #25 Mangrove rivulus MODERN SPECIES 59 STXBP5 (ENSKMAG00000015200) GRM1 (ENSKMAG00000015089) SHPRH (ENSKMAG00000014992) ENSKMAG00000014944 fbxo30a (ENSKMAG00000014928) stx11a (ENSKMAG00000014913) STX11 (ENSKMAG00000014884) ENSKMAG00000014866 rmnd1 (ENSKMAG00000014835) ENSKMAG00000014539 ENSKMAG00000014436 TULP4 (ENSKMAG00000014370) slc18b1 (ENSKMAG00000014308) ahi1 (ENSKMAG00000014264) ENSKMAG00000014241 ##31 hist2h3ca1 (ENSKMAG00000014201) #25 ENSKMAG00000014180 #37 OTOF (ENSKMAG00000014101) mapre3a (ENSKMAG00000014053) dpysl5a (ENSKMAG00000013999) dnmt3ab (ENSKMAG00000013869) dtnbb (ENSKMAG00000013696) ASXL2 (ENSKMAG00000013630) kif3cb (ENSKMAG00000013602) hadhab (ENSKMAG00000013503) RPS6KA5 (ENSKMAG00000013410) mbip (ENSKMAG00000013349) nkx2.1 (ENSKMAG00000013335) NKX2-8 (ENSKMAG00000013325) pax9 (ENSKMAG00000013301) slc25a21 (ENSKMAG00000013224) Cyprinodontoidei ANCESTRAL SPECIES ENSGT01100000263559.A #25 NAME_4 ANCESTRAL SPECIES ENSGT01100000263559.A #25 Sheepshead minnow MODERN SPECIES 513 tnpo3 (ENSCVAG00000020285) rpl18a (ENSCVAG00000020360) xpot (ENSCVAG00000020453) ENSCVAG00000020489 ENSCVAG00000020519 lta4h (ENSCVAG00000020551) pthlha (ENSCVAG00000020592) C11orf98 (ENSCVAG00000020626) ENSCVAG00000020670 lrp6 (ENSCVAG00000020775) tbk1 (ENSCVAG00000020828) gpr19 (ENSCVAG00000020861) crebl2 (ENSCVAG00000020882) dusp16 (ENSCVAG00000020964) eps8a (ENSCVAG00000021049) H3-7 (ENSCVAG00000021142) #25 ENSCVAG00000021174 ##31 tmem185 (ENSCVAG00000021221) Poeciliinae ANCESTRAL SPECIES ENSGT01100000263559.A #25 Poecilia ANCESTRAL SPECIES ENSGT01100000263559.A #25 Guppy MODERN SPECIES 448 ENSPREG00000008166 ENSPREG00000008177 ENSPREG00000008189 ENSPREG00000008202 ENSPREG00000008226 MYADM (ENSPREG00000008232) ENSPREG00000008275 vangl2 (ENSPREG00000008575) ENSPREG00000008591 ENSPREG00000008607 ENSPREG00000008626 ENSPREG00000008636 ENSPREG00000008658 ##31 ENSPREG00000008666 #37 ENSPREG00000008688 ENSPREG00000008773 #25 ENSPREG00000008787 ENSPREG00000008876 ##28 supt16h (ENSPREG00000008906) ENSPREG00000009055 SLC12A6 (ENSPREG00000009136) nop10 (ENSPREG00000009335) lpcat4 (ENSPREG00000009344) emc4 (ENSPREG00000009381) ENSPREG00000009389 ENSPREG00000009404 ENSPREG00000009430 ENSPREG00000009460 ENSPREG00000009478 ENSPREG00000009497 ENSPREG00000009513 Protacanthopterygii ANCESTRAL SPECIES 254 ENSGT00990000203553.c.a.a.a.b ##28 ENSGT01100000263474.a.b.a.b.a.c.a.b.b.a.a.b.a #8 ENSGT01100000263559.A #25 ENSGT01100000263567.a.a.d.a.b #35 ENSGT00990000203553.c.a.b #10 Northern pike DUPLICATION Northern pike MODERN SPECIES 27 ENSELUG00000001737 #10 ENSELUG00000025166 #11 ENSELUG00000031217 #12 ENSELUG00000026011 #13 ENSELUG00000033473 #14 ENSELUG00000024924 #15 ENSELUG00000032951 #16 ENSELUG00000031155 #17 ENSELUG00000033583 #18 ENSELUG00000034551 #19 ENSELUG00000032686 #20 ENSELUG00000025616 #21 hist2h3c (ENSELUG00000025164) #22 ENSELUG00000030790 #23 ENSELUG00000031278 #24 ENSELUG00000032875 #25 ENSELUG00000031995 #26 ENSELUG00000032921 #27 ENSELUG00000030394 #28 ENSELUG00000028671 #29 ENSELUG00000031902 #30 ENSELUG00000034593 #31 ENSELUG00000031097 #32 ENSELUG00000024636 #33 ENSELUG00000028816 #34 ENSELUG00000027817 #35 ENSELUG00000030940 #36 ENSELUG00000025623 #37 ENSELUG00000031904 ##32 Northern pike MODERN SPECIES 27 hist2h3c (ENSELUG00000025164) #22 ENSELUG00000025616 #21 ENSELUG00000032686 #20 ENSELUG00000034551 #19 ENSELUG00000033583 #18 ENSELUG00000031155 #17 ENSELUG00000032951 #16 ENSELUG00000024924 #15 ENSELUG00000033473 #14 ENSELUG00000026011 #13 ENSELUG00000031217 #12 ENSELUG00000025166 #11 ENSELUG00000001737 #10 ENSELUG00000030187 #9 ENSELUG00000032145 #8 ENSELUG00000034136 #7 ENSELUG00000034687 ##37 ENSELUG00000025768 ##36 ENSELUG00000034445 ##35 ENSELUG00000033930 ##37 ENSELUG00000026265 ##36 ENSELUG00000027471 ##37 ENSELUG00000032641 ##31 ENSELUG00000030349 ##37 ENSELUG00000029430 ##36 ENSELUG00000030876 ENSELUG00000026785 ##36 ENSELUG00000030886 ##37 ENSELUG00000033168 ##36 ENSELUG00000031713 ##35 ENSELUG00000028165 ##28 Northern pike MODERN SPECIES 27 ENSELUG00000030790 #23 ENSELUG00000031278 #24 ENSELUG00000032875 #25 ENSELUG00000031995 #26 ENSELUG00000032921 #27 ENSELUG00000030394 #28 ENSELUG00000028671 #29 ENSELUG00000031902 #30 ENSELUG00000034593 #31 ENSELUG00000031097 #32 ENSELUG00000024636 #33 ENSELUG00000028816 #34 ENSELUG00000027817 #35 ENSELUG00000030940 #36 ENSELUG00000025623 #37 ENSELUG00000031904 ##32 Northern pike MODERN SPECIES 27 ENSELUG00000030809 ENSELUG00000001738 ENSELUG00000033514 ENSELUG00000010077 ENSELUG00000031535 ##36 ENSELUG00000027517 ##37 ENSELUG00000033193 ##27 ENSELUG00000032380 ##28 ENSELUG00000030526 ##36 ENSELUG00000032368 ##37 ENSELUG00000026302 ##32 ENSELUG00000025501 ##36 ENSELUG00000029923 ##37 ENSELUG00000028165 ##28 ENSELUG00000031713 ##35 ENSELUG00000033168 ##36 ENSELUG00000030886 ##37 ENSELUG00000026785 ##36 ENSELUG00000030876 ENSELUG00000029430 ##36 ENSELUG00000030349 ##37 ENSELUG00000032641 ##31 ENSELUG00000027471 ##37 ENSELUG00000026265 ##36 ENSELUG00000033930 ##37 ENSELUG00000034445 ##35 Salmoninae ANCESTRAL SPECIES 1929 ENSGT01100000263559.A #25 ENSGT01100000263567.a.a.d.a.b #35 Salmoninae_a ANCESTRAL SPECIES 812 ENSGT01100000263559.A #25 ENSGT01100000263567.a.a.d.a.b #35 Oncorhynchus ANCESTRAL SPECIES 679 ENSGT01100000263559.A #25 ENSGT01100000263567.a.a.d.a.b.a.b.b #35 Rainbow trout MODERN SPECIES 8 ENSOMYG00000056884 ##31 ENSOMYG00000053927 #37 ENSOMYG00000057016 ##35 ENSOMYG00000074727 ##31 ENSOMYG00000068607 ENSOMYG00000063237 ##35 ENSOMYG00000049763 #37 ENSOMYG00000066475 #31 ENSOMYG00000071064 #37 ENSOMYG00000019017 ENSOMYG00000018961 ENSOMYG00000019021 ENSOMYG00000052318 ##31 ENSOMYG00000062259 #37 ENSOMYG00000074864 ##31 zgc:113984 (ENSOMYG00000054346) #25 ENSOMYG00000067344 #35 ENSOMYG00000070506 #37 ENSOMYG00000051206 ##31 ENSOMYG00000056480 ##35 ENSOMYG00000052948 ##35 ENSOMYG00000067206 #37 ENSOMYG00000066134 #37 ENSOMYG00000065438 ##31 ENSOMYG00000048563 ##35 ENSOMYG00000053027 #37 ENSOMYG00000064604 ##31 ENSOMYG00000067008 ##35 ENSOMYG00000077860 #37 ENSOMYG00000060603 ##31 ENSOMYG00000050025 ##35 Huchen DUPLICATION Huchen MODERN SPECIES 5773 ENSHHUG00000034357 #37 ENSHHUG00000034325 ##31 ENSHHUG00000034306 ##31 h2ax (ENSHHUG00000034297) ##31 ENSHHUG00000034240 #25 ENSHHUG00000034237 #19 ENSHHUG00000034209 #23 Huchen MODERN SPECIES 1007 ENSHHUG00000048329 PIK3R2 (ENSHHUG00000048306) ENSHHUG00000048305 MAST3 (ENSHHUG00000048304) ENSHHUG00000048301 klhl26 (ENSHHUG00000048300) ENSHHUG00000048299 ENSHHUG00000048298 ENSHHUG00000048296 comp (ENSHHUG00000047976) ENSHHUG00000047972 MED26 (ENSHHUG00000047970) tmem38a (ENSHHUG00000047958) slc35e1 (ENSHHUG00000047955) ENSHHUG00000047954 ##31 ENSHHUG00000047942 #25 Otomorpha ANCESTRAL SPECIES 644 ENSGT00990000203553.c.a.a.a.a.b.o.a #26 ENSGT01100000263474.a.b.a.b.a.c.b.a.b ##36 ENSGT01100000263559.A #25 ENSGT00990000203553.c.a.a.b.b.b ##28 Clupeiformes ANCESTRAL SPECIES ENSGT01100000263559.A #25 Atlantic herring MODERN SPECIES 16 dand5 (ENSCHAG00000009432) rad23aa (ENSCHAG00000009450) ENSCHAG00000009468 ENSCHAG00000009476 get3 (ENSCHAG00000009490) ENSCHAG00000009579 ENSCHAG00000009610 ##36 ENSCHAG00000009622 ##28 ENSCHAG00000009632 ##36 ENSCHAG00000009635 ENSCHAG00000009639 ENSCHAG00000009652 ##36 ENSCHAG00000009657 ##36 ENSCHAG00000009666 #26 ENSCHAG00000009678 ENSCHAG00000009681 #25 PARP11 (ENSCHAG00000009689) METRNL (ENSCHAG00000009699) ENSCHAG00000009702 ENSCHAG00000009711 ENSCHAG00000009717 ENSCHAG00000009731 ENSCHAG00000009778 ENSCHAG00000009792 ENSCHAG00000009820 ENSCHAG00000009832 ENSCHAG00000009843 ENSCHAG00000009867 ENSCHAG00000009890 ENSCHAG00000009917 ENSCHAG00000009962 Otophysi ANCESTRAL SPECIES 487 ENSGT00990000203553.c.a.a.b.a.a.b.b.n ##28 ENSGT01100000263504.a.b.b.b.b ENSGT01100000263559.A #25 ENSGT00990000203553.c.a.a.b.b.b ##28 Characiphysae ANCESTRAL SPECIES 484 ENSGT01100000263559.A #25 ENSGT00990000203553.c.a.a.a.b ##28 Channel catfish DUPLICATION Channel catfish MODERN SPECIES 459 ENSIPUG00000013503 #25 Channel catfish MODERN SPECIES 28 efcab11 (ENSIPUG00000010544) tdp1 (ENSIPUG00000010568) kcnk13 (ENSIPUG00000010608) hmbox1a (ENSIPUG00000010621) KIF13B (ENSIPUG00000010667) ENSIPUG00000010857 znf395 (ENSIPUG00000010868) ENSIPUG00000010901 TIAM2 (ENSIPUG00000010910) tfb1m (ENSIPUG00000010964) CLDN20 (ENSIPUG00000010993) ENSIPUG00000011000 ENSIPUG00000011075 ENSIPUG00000011090 ENSIPUG00000011117 ENSIPUG00000011145 #25 ENSIPUG00000011150 ##28 ENSIPUG00000011160 #37 ENSIPUG00000011170 ENSIPUG00000011186 ENSIPUG00000011194 ENSIPUG00000011206 ENSIPUG00000011226 ptp4a2a (ENSIPUG00000011240) ppp1r13ba (ENSIPUG00000011282) sdsl (ENSIPUG00000011383) DAAM1 (ENSIPUG00000011453) gpr135 (ENSIPUG00000011650) jkamp (ENSIPUG00000011656) ENSIPUG00000011680 LRFN5 (ENSIPUG00000011711) Characiphysae_b ANCESTRAL SPECIES ENSGT01100000263559.A #25 Characoidei ANCESTRAL SPECIES ENSGT01100000263559.A #25 Red-bellied piranha MODERN SPECIES 4069 ENSPNAG00000027693 #25 Mexicana tetra MODERN SPECIES 361 ENSAMXG00000025091 ##31 zgc:113984 (ENSAMXG00000041318) #25 Cyprinoidei DUPLICATION Cyprinoidei DUPLICATION Cyprinoidei ANCESTRAL SPECIES ENSGT01100000263559.A.cb.a #25 Zebrafish MODERN SPECIES 17 ENSDARG00000112967 #25 ENSDARG00000112593 ##31 ENSDARG00000116654 ##36 ENSDARG00000113399 ##31 ENSDARG00000110812 ENSDARG00000115938 ##36 ENSDARG00000115766 #37 ENSDARG00000114370 #32 ENSDARG00000114534 ENSDARG00000114195 ##36 ENSDARG00000112840 ##31 ENSDARG00000114500 #25 ENSDARG00000115281 zgc:194989 (ENSDARG00000114405) ##36 ENSDARG00000091905 #37 ENSDARG00000112647 #25 zgc:162611 (ENSDARG00000092846) ENSDARG00000012073 ENSDARG00000111964 ##36 zgc:165555 (ENSDARG00000112954) ENSDARG00000111648 ##31 zgc:113983 (ENSDARG00000068941) #32 ENSDARG00000110841 #37 zgc:112234 (ENSDARG00000111934) ##36 ENSDARG00000113205 ENSDARG00000112561 ##36 hist2h3c (ENSDARG00000094154) #32 ENSDARG00000075508 #37 ENSDARG00000109370 ##36 ENSDARG00000113800 ##31 ENSDARG00000111753 Cyprinoidei ANCESTRAL SPECIES 577 ENSGT01100000263559.A.cb.b #25 ENSGT00990000203553.c.a.a.b.b.b ##28 Cyprininae ANCESTRAL SPECIES 1756 ENSGT01100000263559.A.cb.b #25 ENSGT00990000203553.c.a.a.b.b.b ##28 Cyprininae_a ANCESTRAL SPECIES 1351 ENSGT01100000263559.A.cb.b #25 ENSGT00990000203553.c.a.a.b.b.b ##28 Common carp reference MODERN SPECIES 37 lsm14aa (ENSCCRG00000082556) gpia (ENSCCRG00000006923) hsd17b2 (ENSCCRG00000006911) mphosph6 (ENSCCRG00000072592) ENSCCRG00000076372 ENSCCRG00000045509 ENSCCRG00000038831 ENSCCRG00000078261 ENSCCRG00000076778 irx5b (ENSCCRG00000079305) amfra (ENSCCRG00000004770) ENSCCRG00000056073 ENSCCRG00000005460 ENSCCRG00000001949 ENSCCRG00000073823 ##31 ENSCCRG00000054770 #25 ENSCCRG00000037918 ##28 ENSCCRG00000082822 ##28 ENSCCRG00000060923 ENSCCRG00000005674 ENSCCRG00000067648 ##36 ENSCCRG00000071224 ##36 ENSCCRG00000064639 ENSCCRG00000054560 ENSCCRG00000065041 ##28 ENSCCRG00000038494 ENSCCRG00000073505 ENSCCRG00000052426 cdk10 (ENSCCRG00000003550) vps4a (ENSCCRG00000081285) spire2 (ENSCCRG00000076460) Zebrafish DUPLICATION Zebrafish MODERN SPECIES 17 ENSDARG00000113481 ##31 ENSDARG00000112375 #32 ENSDARG00000111247 zgc:173585 (ENSDARG00000089039) ##36 ENSDARG00000112967 #25 ENSDARG00000112593 ##31 ENSDARG00000116654 ##36 ENSDARG00000113399 ##31 ENSDARG00000110812 ENSDARG00000115938 ##36 ENSDARG00000115766 #37 ENSDARG00000114370 #32 ENSDARG00000114534 ENSDARG00000114195 ##36 ENSDARG00000112840 ##31 ENSDARG00000114500 #25 ENSDARG00000115281 zgc:194989 (ENSDARG00000114405) ##36 ENSDARG00000091905 #37 ENSDARG00000112647 #25 zgc:162611 (ENSDARG00000092846) ENSDARG00000012073 ENSDARG00000111964 ##36 zgc:165555 (ENSDARG00000112954) ENSDARG00000111648 ##31 zgc:113983 (ENSDARG00000068941) #32 ENSDARG00000110841 #37 zgc:112234 (ENSDARG00000111934) ##36 ENSDARG00000113205 ENSDARG00000112561 ##36 hist2h3c (ENSDARG00000094154) #32 Zebrafish MODERN SPECIES 22 ENSDARG00000105314 ##31 ENSDARG00000105352 ENSDARG00000105397 ##36 ENSDARG00000105431 ENSDARG00000098970 #25 ENSDARG00000029838 ENSDARG00000105342 ENSDARG00000100259 ##36 hist1h2a7 (ENSDARG00000099123) ##31 ENSDARG00000101249 si:dkey-23a13.16 (ENSDARG00000102806) ##36 si:dkey-23a13.17 (ENSDARG00000105328) #37 ENSDARG00000101720 #25 zgc:163040 (ENSDARG00000099920) si:dkey-23a13.20 (ENSDARG00000100906) ##31 hist2h3ca1 (ENSDARG00000105508) #25 ENSDARG00000105384 ##36 ENSDARG00000105473 ENSDARG00000015607 ENSDARG00000105372 ENSDARG00000105379 ENSDARG00000105353 H3C15 (ENSDARG00000105459) #32 ENSDARG00000105430 #37 si:ch73-368j24.8 (ENSDARG00000104588) ##36 ENSDARG00000105382 ENSDARG00000100279 ##31 zgc:112234 (ENSDARG00000105468) ##36 ENSDARG00000105318 ENSDARG00000105400 ##31 zgc:112234 (ENSDARG00000105414) ##36 Cyprinoidei ANCESTRAL SPECIES 191 ENSGT00940000159147.b.b ENSGT00950000182991.A.b.b ENSGT00990000203615.b.a.a.a.a.g.a.b ENSGT00940000166094 ENSGT00940000162700.f ENSGT00950000183089.c.a.m.a.b #37 ENSGT01100000263559.B #32 ENSGT01060000248528.b.n ENSGT01100000263474.a.b.a.b.a.d ##36 ENSGT00950000183089.c.a.m.a.a #37 ENSGT01100000263559.A.db #25 ENSGT01060000248528.b.m.b ENSGT01020000230360.c.b.a.a.a.a.a.d.i ##31 ENSGT00940000156472.c Zebrafish DUPLICATION Zebrafish MODERN SPECIES 22 hist1h2a11 (ENSDARG00000088686) ##31 ENSDARG00000103819 #32 zgc:112234 (ENSDARG00000099514) ##36 ENSDARG00000105314 ##31 ENSDARG00000105352 ENSDARG00000105397 ##36 ENSDARG00000105431 ENSDARG00000098970 #25 ENSDARG00000029838 ENSDARG00000105342 ENSDARG00000100259 ##36 hist1h2a7 (ENSDARG00000099123) ##31 ENSDARG00000101249 si:dkey-23a13.16 (ENSDARG00000102806) ##36 si:dkey-23a13.17 (ENSDARG00000105328) #37 ENSDARG00000101720 #25 zgc:163040 (ENSDARG00000099920) si:dkey-23a13.20 (ENSDARG00000100906) ##31 hist2h3ca1 (ENSDARG00000105508) #25 ENSDARG00000105384 ##36 ENSDARG00000105473 ENSDARG00000015607 ENSDARG00000105372 ENSDARG00000105379 ENSDARG00000105353 H3C15 (ENSDARG00000105459) #32 ENSDARG00000105430 #37 si:ch73-368j24.8 (ENSDARG00000104588) ##36 ENSDARG00000105382 ENSDARG00000100279 ##31 zgc:112234 (ENSDARG00000105468) ##36 Zebrafish MODERN SPECIES 22 zgc:112234 (ENSDARG00000105483) ##36 ENSDARG00000105366 ##31 ENSDARG00000105482 ENSDARG00000105350 #37 ENSDARG00000105478 ##31 zgc:173552 (ENSDARG00000105345) ##35 zgc:112234 (ENSDARG00000105340) ##36 hist1h2a6 (ENSDARG00000100024) ##31 ENSDARG00000105376 ENSDARG00000113763 si:ch73-368j24.12 (ENSDARG00000105502) ENSDARG00000105418 #25 ENSDARG00000105471 ##28 ENSDARG00000058564 ENSDARG00000086552 ##31 ENSDARG00000105374 #25 zgc:112234 (ENSDARG00000105414) ##36 ENSDARG00000105400 ##31 ENSDARG00000105318 zgc:112234 (ENSDARG00000105468) ##36 ENSDARG00000100279 ##31 ENSDARG00000105382 si:ch73-368j24.8 (ENSDARG00000104588) ##36 ENSDARG00000105430 #37 H3C15 (ENSDARG00000105459) #32 ENSDARG00000105353 ENSDARG00000105379 ENSDARG00000105372 ENSDARG00000015607 ENSDARG00000105473 ENSDARG00000105384 ##36 Zebrafish DUPLICATION Zebrafish MODERN SPECIES 17 ENSDARG00000112647 #25 ENSDARG00000091905 #37 zgc:194989 (ENSDARG00000114405) ##36 ENSDARG00000115281 ENSDARG00000114500 #25 ENSDARG00000112840 ##31 ENSDARG00000114195 ##36 ENSDARG00000114534 ENSDARG00000114370 #32 ENSDARG00000115766 #37 ENSDARG00000115938 ##36 ENSDARG00000110812 ENSDARG00000113399 ##31 ENSDARG00000116654 ##36 ENSDARG00000112593 ##31 ENSDARG00000112967 #25 zgc:173585 (ENSDARG00000089039) ##36 ENSDARG00000111247 ENSDARG00000112375 #32 ENSDARG00000113481 ##31 ENSDARG00000032637 #37 ENSDARG00000110035 ENSDARG00000109755 ##31 ENSDARG00000114125 ##36 si:dkey-261m9.17 (ENSDARG00000111165) zgc:113984 (ENSDARG00000115644) #25 ENSDARG00000114133 ##31 zgc:153405 (ENSDARG00000096992) #37 ENSDARG00000076320 ano9a (ENSDARG00000078941) ##36 ANO5 (ENSDARG00000015731) Zebrafish MODERN SPECIES 17 CLPX (ENSDARG00000067796) spi1a (ENSDARG00000067797) ENSDARG00000039951 FIBIN (ENSDARG00000039949) slc5a12 (ENSDARG00000005004) ANO3 (ENSDARG00000058015) svip (ENSDARG00000097236) GAS2 (ENSDARG00000001259) fancf (ENSDARG00000019250) slc17a6a (ENSDARG00000001127) ANO5 (ENSDARG00000015731) ano9a (ENSDARG00000078941) ##36 ENSDARG00000076320 zgc:153405 (ENSDARG00000096992) #37 ENSDARG00000114133 ##31 zgc:113984 (ENSDARG00000115644) #25 si:dkey-261m9.17 (ENSDARG00000111165) ENSDARG00000114125 ##36 ENSDARG00000109755 ##31 ENSDARG00000110035 ENSDARG00000032637 #37 ENSDARG00000113481 ##31 ENSDARG00000112375 #32 ENSDARG00000111247 zgc:173585 (ENSDARG00000089039) ##36 ENSDARG00000112967 #25 ENSDARG00000112593 ##31 ENSDARG00000116654 ##36 ENSDARG00000113399 ##31 ENSDARG00000110812 ENSDARG00000115938 ##36 Zebrafish MODERN SPECIES 22 ENSDARG00000095133 ENSDARG00000094374 ENSDARG00000028912 ENSDARG00000095068 ENSDARG00000105455 ENSDARG00000093987 ENSDARG00000105470 dusp19b (ENSDARG00000045200) hist1h2a11 (ENSDARG00000088686) ##31 ENSDARG00000103819 #32 zgc:112234 (ENSDARG00000099514) ##36 ENSDARG00000105314 ##31 ENSDARG00000105352 ENSDARG00000105397 ##36 ENSDARG00000105431 ENSDARG00000098970 #25 ENSDARG00000029838 ENSDARG00000105342 ENSDARG00000100259 ##36 hist1h2a7 (ENSDARG00000099123) ##31 ENSDARG00000101249 si:dkey-23a13.16 (ENSDARG00000102806) ##36 si:dkey-23a13.17 (ENSDARG00000105328) #37 ENSDARG00000101720 #25 zgc:163040 (ENSDARG00000099920) si:dkey-23a13.20 (ENSDARG00000100906) ##31 hist2h3ca1 (ENSDARG00000105508) #25 ENSDARG00000105384 ##36 ENSDARG00000105473 ENSDARG00000015607 ENSDARG00000105372 Zebrafish MODERN SPECIES 22 capn1 (ENSDARG00000045199) pnp5a (ENSDARG00000078619) KCNJ10 (ENSDARG00000090815) ENSDARG00000105438 ENSDARG00000074818 zgc:110425 (ENSDARG00000058479) #37 ENSDARG00000105444 ##31 ENSDARG00000105359 #32 zgc:112234 (ENSDARG00000105507) ##36 hist1h2a2 (ENSDARG00000103015) ##31 ENSDARG00000105409 zgc:112234 (ENSDARG00000105393) ##36 zgc:154164 (ENSDARG00000105355) ENSDARG00000074012 ENSDARG00000098595 ##31 ENSDARG00000105484 #25 zgc:112234 (ENSDARG00000105483) ##36 ENSDARG00000105366 ##31 ENSDARG00000105482 ENSDARG00000105350 #37 ENSDARG00000105478 ##31 zgc:173552 (ENSDARG00000105345) ##35 zgc:112234 (ENSDARG00000105340) ##36 hist1h2a6 (ENSDARG00000100024) ##31 ENSDARG00000105376 ENSDARG00000113763 si:ch73-368j24.12 (ENSDARG00000105502) ENSDARG00000105418 #25 ENSDARG00000105471 ##28 ENSDARG00000058564 ENSDARG00000086552 ##31 Zebrafish MODERN SPECIES 22 zgc:154164 (ENSDARG00000105355) ENSDARG00000074012 ENSDARG00000098595 ##31 ENSDARG00000105484 #25 zgc:112234 (ENSDARG00000105483) ##36 ENSDARG00000105366 ##31 ENSDARG00000105482 ENSDARG00000105350 #37 ENSDARG00000105478 ##31 zgc:173552 (ENSDARG00000105345) ##35 zgc:112234 (ENSDARG00000105340) ##36 hist1h2a6 (ENSDARG00000100024) ##31 ENSDARG00000105376 ENSDARG00000113763 si:ch73-368j24.12 (ENSDARG00000105502) ENSDARG00000105418 #25 ENSDARG00000105471 ##28 ENSDARG00000058564 ENSDARG00000086552 ##31 ENSDARG00000105374 #25 zgc:112234 (ENSDARG00000105414) ##36 ENSDARG00000105400 ##31 ENSDARG00000105318 zgc:112234 (ENSDARG00000105468) ##36 ENSDARG00000100279 ##31 ENSDARG00000105382 si:ch73-368j24.8 (ENSDARG00000104588) ##36 ENSDARG00000105430 #37 H3C15 (ENSDARG00000105459) #32 ENSDARG00000105353 ENSDARG00000105379 Cyprininae ANCESTRAL SPECIES 1006 ENSGT01060000248528.b.m.a.a ENSGT01100000263474.a.b.a.b.a.c.b.a.b.b.a.a.b.a.b ##36 ENSGT00950000183089.c.a.m.a.a #37 ENSGT01100000263559.A.db #25 ENSGT00990000203553.c.a.a.b.b.a.a.a.a.b.f ##28 Goldfish MODERN SPECIES 45 ENSCARG00000041968 GLG1 (ENSCARG00000042057) urahb (ENSCARG00000042789) ENSCARG00000042825 ENSCARG00000043513 ENSCARG00000044042 nfat5a (ENSCARG00000044049) hprt1l (ENSCARG00000044100) wwox (ENSCARG00000044173) ENSCARG00000044192 MAF (ENSCARG00000044203) ENSCARG00000044209 ##28 ENSCARG00000044213 ##36 ENSCARG00000044223 ##36 si:dkey-23a13.17 (ENSCARG00000044240) #37 zgc:113984 (ENSCARG00000044246) #25 ENSCARG00000044254 ##36 ENSCARG00000044292 ##35 bmb (ENSCARG00000044302) SLC7A10 (ENSCARG00000044358) ENSCARG00000044764 amfra (ENSCARG00000045280) irx5b (ENSCARG00000045342) ENSCARG00000045361 ENSCARG00000045378 ENSCARG00000045400 ENSCARG00000045425 pcdh2aa1 (ENSCARG00000045434) ENSCARG00000045452 ENSCARG00000045471 PCDHAC2 (ENSCARG00000045509) Cyprininae_a ANCESTRAL SPECIES 718 ENSGT00990000203553.c.a.a.b.a.a.b.b.n ##28 ENSGT01100000263504.a.b.b.b.b ENSGT01020000230360.c.b.a.a.a.a.b.a.a.a.b.f.a.a #31 ENSGT00950000183089.c.a.m.b.a #37 ENSGT01100000263559.A.db #25 ENSGT00990000203553.c.a.a.b.b.a.a.a.a.b.f ##28 Common carp reference DUPLICATION Common carp reference DUPLICATION Common carp reference DUPLICATION Common carp reference MODERN SPECIES 6 ENSCCRG00000064299 ##35 ENSCCRG00000080890 ##36 ENSCCRG00000071433 ENSCCRG00000082013 #31 ENSCCRG00000059978 #37 ENSCCRG00000074501 #37 ENSCCRG00000071019 #31 ENSCCRG00000076808 ENSCCRG00000051417 ##28 ENSCCRG00000072925 ##28 zgc:92594 (ENSCCRG00000061796) ENSCCRG00000080624 ENSCCRG00000069761 ENSCCRG00000072744 ##36 ENSCCRG00000076831 ##36 ENSCCRG00000068579 #25 ENSCCRG00000073536 ##31 ENSCCRG00000055618 ##36 ENSCCRG00000024173 zgc:92594 (ENSCCRG00000080161) ENSCCRG00000071272 ##28 ENSCCRG00000074314 #35 ENSCCRG00000051411 ##35 ENSCCRG00000080345 #31 ENSCCRG00000079473 #37 ENSCCRG00000080835 #26 ENSCCRG00000041752 ENSCCRG00000079574 ENSCCRG00000053841 ENSCCRG00000002049 ENSCCRG00000077879 Common carp reference MODERN SPECIES 6 ENSCCRG00000024173 zgc:92594 (ENSCCRG00000080161) ENSCCRG00000071272 ##28 ENSCCRG00000074314 #35 ENSCCRG00000051411 ##35 ENSCCRG00000080345 #31 ENSCCRG00000079473 #37 ENSCCRG00000080835 #26 ENSCCRG00000041752 ENSCCRG00000079574 ENSCCRG00000053841 ENSCCRG00000002049 ENSCCRG00000077879 ENSCCRG00000065907 ##28 ENSCCRG00000068541 ENSCCRG00000058296 #25 ENSCCRG00000007897 ##35 ENSCCRG00000079915 #31 ENSCCRG00000066827 #31 ENSCCRG00000079566 #37 ENSCCRG00000067578 #37 ENSCCRG00000070566 #35 ENSCCRG00000053328 ##36 ENSCCRG00000067567 ENSCCRG00000051420 ENSCCRG00000064581 ENSCCRG00000019601 ##28 ENSCCRG00000081655 ##36 ENSCCRG00000051405 ENSCCRG00000081386 ##28 ENSCCRG00000062264 ##36 Common carp reference MODERN SPECIES ENSCCRG00000038245 ENSCCRG00000061087 ENSCCRG00000045009 ENSCCRG00000045003 ENSCCRG00000003172 ENSCCRG00000063320 casq1b (ENSCCRG00000019310) ENSCCRG00000062278 ##36 ENSCCRG00000063710 #26 ENSCCRG00000079776 ENSCCRG00000055940 ENSCCRG00000060112 #31 ENSCCRG00000068119 #32 ENSCCRG00000059347 #31 ENSCCRG00000053465 #37 ENSCCRG00000062287 #25 ENSCCRG00000004814 ENSCCRG00000062149 ENSCCRG00000064868 ##36 ENSCCRG00000052968 ##36 LURAP1L (ENSCCRG00000082720) TYRP1 (ENSCCRG00000047321) ENSCCRG00000065752 PTPRD (ENSCCRG00000049254) ENSCCRG00000058818 ENSCCRG00000032940 ENSCCRG00000054678 #37 ENSCCRG00000058256 #37 ENSCCRG00000066456 ENSCCRG00000079563 ##36 ENSCCRG00000076365 Common carp reference MODERN SPECIES 37 ENSCCRG00000023629 FIBIN (ENSCCRG00000064565) slc5a12 (ENSCCRG00000001602) ANO3 (ENSCCRG00000001456) svip (ENSCCRG00000073693) GAS2 (ENSCCRG00000079326) slc17a6a (ENSCCRG00000001345) ANO5 (ENSCCRG00000075447) ENSCCRG00000033108 ENSCCRG00000077396 ENSCCRG00000067925 #32 ENSCCRG00000061204 ##31 ENSCCRG00000058264 ENSCCRG00000067526 ENSCCRG00000012743 #14 ENSCCRG00000060232 #25 ENSCCRG00000059679 ##36 ENSCCRG00000041145 ENSCCRG00000017405 ENSCCRG00000059243 ENSCCRG00000071273 ENSCCRG00000033138 ENSCCRG00000079081 #37 ENSCCRG00000068098 ##36 ENSCCRG00000061770 #19 ENSCCRG00000057144 ##36 ENSCCRG00000041985 ENSCCRG00000081341 ENSCCRG00000073838 wwox (ENSCCRG00000070423) hprt1l (ENSCCRG00000077103) Golden-line barbel DUPLICATION Golden-line barbel MODERN SPECIES 2075 DCTN6 (ENSSGRG00000011814) ENSSGRG00000011844 ENSSGRG00000011846 ENSSGRG00000011850 ##31 ENSSGRG00000011873 #25 ENSSGRG00000011883 ##28 Golden-line barbel MODERN SPECIES 392 ENSSGRG00000039040 SLC44A2 (ENSSGRG00000039048) ENSSGRG00000039339 ENSSGRG00000039340 ENSSGRG00000039342 gcdhb (ENSSGRG00000039346) syce2 (ENSSGRG00000039384) syce2 (ENSSGRG00000039385) ilf3b (ENSSGRG00000039390) ptger1b (ENSSGRG00000040090) ENSSGRG00000040092 ENSSGRG00000040095 pglyrp6 (ENSSGRG00000040096) tufm (ENSSGRG00000040109) tufm (ENSSGRG00000040111) ENSSGRG00000040113 #25 Golden-line barbel MODERN SPECIES 3738 ENSSGRG00000004810 #25 ENSSGRG00000004830 ##28 Osteoglossiformes ANCESTRAL SPECIES ENSGT01100000263559.A #25 P. kingsleyae DUPLICATION P. kingsleyae MODERN SPECIES 67 cry1b (ENSPKIG00000024586) zgc:153031 (ENSPKIG00000024624) si:ch73-62b13.1 (ENSPKIG00000024642) ENSPKIG00000024647 tnnt2c (ENSPKIG00000024654) tmem263 (ENSPKIG00000024668) ENSPKIG00000024674 ric8b (ENSPKIG00000024699) rfx4 (ENSPKIG00000024742) endouc (ENSPKIG00000024767) cyb5r3 (ENSPKIG00000024781) ppfibp1b (ENSPKIG00000024823) ENSPKIG00000024889 ##35 ENSPKIG00000024891 #37 ENSPKIG00000024896 #25 ENSPKIG00000024904 #37 si:ch211-245j22.3 (ENSPKIG00000024907) ITIH5 (ENSPKIG00000024913) itih2 (ENSPKIG00000024927) kin (ENSPKIG00000024945) atp5f1c (ENSPKIG00000024970) taf3 (ENSPKIG00000024986) gata3 (ENSPKIG00000024996) ENSPKIG00000025008 ENSPKIG00000025018 CELF2 (ENSPKIG00000025033) usp6nl (ENSPKIG00000025076) ENSPKIG00000025103 ENSPKIG00000025110 ENSPKIG00000025117 P. kingsleyae MODERN SPECIES 134 six4b (ENSPKIG00000019692) SIX1 (ENSPKIG00000019706) six6b (ENSPKIG00000019724) PPM1A (ENSPKIG00000019744) ENSPKIG00000019770 ENSPKIG00000019792 ENSPKIG00000019827 ENSPKIG00000019839 PPP1R13B (ENSPKIG00000019886) daam1b (ENSPKIG00000020048) ENSPKIG00000020224 ##36 ENSPKIG00000020229 #35 L3HYPDH (ENSPKIG00000020240) ENSPKIG00000020258 ##36 ENSPKIG00000020307 #31 ENSPKIG00000020373 #25 ENSPKIG00000020379 WDR20 (ENSPKIG00000020400) ENSPKIG00000020420 ENSPKIG00000020484 ENSPKIG00000020519 ENSPKIG00000020610 ENSPKIG00000020701 ##36 ENSPKIG00000020751 ##28 ENSPKIG00000020771 #31 ENSPKIG00000020791 ##36 ENSPKIG00000020844 ##28 ENSPKIG00000020859 #35 ENSPKIG00000020899 #37 ENSPKIG00000020923 #35 hist1h2a4 (ENSPKIG00000020999) ##31 Reedfish DUPLICATION Reedfish MODERN SPECIES ENSECRG00000000624 ##36 ENSECRG00000000618 ##31 ENSECRG00000000606 #37 ENSECRG00000000595 ENSECRG00000000585 ENSECRG00000000576 ENSECRG00000000565 #32 ENSECRG00000000557 ENSECRG00000000547 ##31 ENSECRG00000000537 ENSECRG00000000526 ENSECRG00000000509 ENSECRG00000000499 ##36 ENSECRG00000000494 ##31 ENSECRG00000000488 ##36 ENSECRG00000000476 #25 ENSECRG00000000470 ENSECRG00000000463 ##36 ENSECRG00000000456 ENSECRG00000000451 ##36 ENSECRG00000000444 ENSECRG00000000438 ##36 ENSECRG00000000427 ENSECRG00000000422 ENSECRG00000000417 ENSECRG00000000413 ENSECRG00000000406 ENSECRG00000002855 ENSECRG00000002849 ENSECRG00000002840 ENSECRG00000002833 Reedfish MODERN SPECIES 4 ENSECRG00000014065 ##31 ENSECRG00000014084 ENSECRG00000014102 ENSECRG00000014124 ccdc12 (ENSECRG00000014144) NBEAL2 (ENSECRG00000014306) ENSECRG00000014770 ENSECRG00000014802 ##31 ENSECRG00000014819 ##36 ENSECRG00000014831 ENSECRG00000014848 #25 ENSECRG00000014857 #37 ENSECRG00000014891 #31 ENSECRG00000014925 ##36 ENSECRG00000014942 ##28 ENSECRG00000014964 #25 ENSECRG00000014984 ENSECRG00000015034 ##31 ENSECRG00000015069 ENSECRG00000015104 ENSECRG00000015160 tex10 (ENSECRG00000015212) invs (ENSECRG00000015286) erp44 (ENSECRG00000015329) ENSECRG00000015357 nr4a3 (ENSECRG00000015392) sec61b (ENSECRG00000015434) alg2 (ENSECRG00000015461) glipr2l (ENSECRG00000014500) ino80c (ENSECRG00000014536) GALNT1 (ENSECRG00000014570) Reedfish DUPLICATION Reedfish MODERN SPECIES 4 ENSECRG00000014012 ##36 ENSECRG00000014021 ##31 ENSECRG00000014027 #37 ENSECRG00000014041 #25 ENSECRG00000014055 ##36 ENSECRG00000014065 ##31 ENSECRG00000014084 ENSECRG00000014102 ENSECRG00000014124 ccdc12 (ENSECRG00000014144) NBEAL2 (ENSECRG00000014306) ENSECRG00000014770 ENSECRG00000014802 ##31 ENSECRG00000014819 ##36 ENSECRG00000014831 ENSECRG00000014848 #25 ENSECRG00000014857 #37 ENSECRG00000014891 #31 ENSECRG00000014925 ##36 ENSECRG00000014942 ##28 ENSECRG00000014964 #25 ENSECRG00000014984 ENSECRG00000015034 ##31 ENSECRG00000015069 ENSECRG00000015104 ENSECRG00000015160 tex10 (ENSECRG00000015212) invs (ENSECRG00000015286) erp44 (ENSECRG00000015329) ENSECRG00000015357 nr4a3 (ENSECRG00000015392) Reedfish MODERN SPECIES 1 ENSECRG00000011376 ada (ENSECRG00000011354) stk35 (ENSECRG00000011324) pdyn (ENSECRG00000011311) HELZ2 (ENSECRG00000011279) GMEB2 (ENSECRG00000011254) STMN3 (ENSECRG00000010316) rtel1 (ENSECRG00000010241) R3HDML (ENSECRG00000010189) hnf4a (ENSECRG00000010169) ttpal (ENSECRG00000010153) SERINC3 (ENSECRG00000010143) ENSECRG00000010135 ##31 ENSECRG00000010132 ##36 ENSECRG00000010125 H3-7 (ENSECRG00000010118) #25 ENSECRG00000010116 ##31 ENSECRG00000010112 ##36 ENSECRG00000010108 ENSECRG00000010105 ##36 ENSECRG00000010097 ENSECRG00000010091 ##35 ENSECRG00000010087 #37 ENSECRG00000010082 ##31 ENSECRG00000010074 ##36 ENSECRG00000010072 ENSECRG00000010063 ENSECRG00000010054 KCNS1 (ENSECRG00000010047) ENSECRG00000010031 cox6c (ENSECRG00000010016) Reedfish DUPLICATION Reedfish MODERN SPECIES 1 uck2a (ENSECRG00000007635) tmco1 (ENSECRG00000007651) ENSECRG00000007670 aldh9a1a.1 (ENSECRG00000007692) prdx1 (ENSECRG00000007721) akr1a1b (ENSECRG00000007744) nasp (ENSECRG00000007767) ENSECRG00000007803 ##31 ENSECRG00000007808 ##36 ENSECRG00000007818 ENSECRG00000007824 ##36 ENSECRG00000007832 ENSECRG00000007837 ##31 ENSECRG00000007845 ##36 ENSECRG00000007853 ENSECRG00000007856 #25 ENSECRG00000007863 ENSECRG00000007870 ##36 ENSECRG00000007876 ##31 ENSECRG00000007890 ##35 ENSECRG00000007896 #37 ENSECRG00000007904 zgc:114041 (ENSECRG00000007915) ENSECRG00000007925 ##31 ENSECRG00000007931 ##31 ENSECRG00000007940 ##36 ENSECRG00000007945 ENSECRG00000007951 ##36 ENSECRG00000007958 ##31 ENSECRG00000007965 #37 ENSECRG00000007972 #32 Reedfish MODERN SPECIES 4 ENSECRG00000014925 ##36 ENSECRG00000014891 #31 ENSECRG00000014857 #37 ENSECRG00000014848 #25 ENSECRG00000014831 ENSECRG00000014819 ##36 ENSECRG00000014802 ##31 ENSECRG00000014770 NBEAL2 (ENSECRG00000014306) ccdc12 (ENSECRG00000014144) ENSECRG00000014124 ENSECRG00000014102 ENSECRG00000014084 ENSECRG00000014065 ##31 ENSECRG00000014055 ##36 ENSECRG00000014041 #25 ENSECRG00000014027 #37 ENSECRG00000014021 ##31 ENSECRG00000014012 ##36 ENSECRG00000013992 ENSECRG00000013920 ENSECRG00000013890 ENSECRG00000013871 ##31 ENSECRG00000013856 ##31 ENSECRG00000013847 ##36 ENSECRG00000013835 ENSECRG00000013820 ##31 ENSECRG00000013813 ##36 ENSECRG00000013749 ENSECRG00000013727 ENSECRG00000013712 Reedfish MODERN SPECIES 1 rpe65b (ENSECRG00000013860) si:ch211-198n5.11 (ENSECRG00000013972) fnbp1l (ENSECRG00000014011) srsf11 (ENSECRG00000014053) ENSECRG00000014093 ENSECRG00000014117 ENSECRG00000014205 ##36 ENSECRG00000014220 ENSECRG00000014237 ENSECRG00000014258 ##35 ENSECRG00000014271 #37 ENSECRG00000014284 ENSECRG00000014301 ##36 ENSECRG00000014317 ##31 ENSECRG00000014336 ##35 ENSECRG00000014345 #25 ENSECRG00000014366 #37 ENSECRG00000014388 ##31 ENSECRG00000014405 ##36 soat1 (ENSECRG00000014431) abl2 (ENSECRG00000014465) tor3a (ENSECRG00000014497) FAM163A (ENSECRG00000014522) ENSECRG00000014566 nphs2 (ENSECRG00000014610) ENSECRG00000014639 ENSECRG00000009138 ndufv1 (ENSECRG00000009156) ENSECRG00000009182 cdk2ap2 (ENSECRG00000009190) aip (ENSECRG00000009201) Ciona ANCESTRAL SPECIES 677 ENSGT01100000263559.A #25 ENSGT00990000203553 #28 ENSGT01100000263567.a.b ##35 Ciona savignyi DUPLICATION Ciona savignyi MODERN SPECIES 315 ENSCSAVG00000001757 ENSCSAVG00000001754 ENSCSAVG00000001751 ENSCSAVG00000001748 ENSCSAVG00000001741 ENSCSAVG00000001737 ENSCSAVG00000001733 ENSCSAVG00000001731 ENSCSAVG00000001728 ENSCSAVG00000001722 ENSCSAVG00000001616 ENSCSAVG00000001613 ENSCSAVG00000001611 ENSCSAVG00000001609 ENSCSAVG00000001600 ENSCSAVG00000001597 #25 ENSCSAVG00000001596 ENSCSAVG00000001595 ENSCSAVG00000001594 #28 ENSCSAVG00000001590 ##35 ENSCSAVG00000001587 #32 ENSCSAVG00000001582 ENSCSAVG00000001580 ENSCSAVG00000001578 ENSCSAVG00000001575 ENSCSAVG00000001496 ENSCSAVG00000001445 ENSCSAVG00000001420 ENSCSAVG00000001413 ENSCSAVG00000001410 ENSCSAVG00000001407 Ciona savignyi MODERN SPECIES 263 ENSCSAVG00000007367 ENSCSAVG00000007599 ENSCSAVG00000007753 ENSCSAVG00000007769 ENSCSAVG00000007774 ENSCSAVG00000007776 ENSCSAVG00000007778 ENSCSAVG00000007781 ENSCSAVG00000007789 ENSCSAVG00000007790 ENSCSAVG00000007791 #25 ENSCSAVG00000007793 ENSCSAVG00000007795 #25 ENSCSAVG00000007797 ENSCSAVG00000007925 ENSCSAVG00000007927 #25 ENSCSAVG00000007933 ENSCSAVG00000007936 #32 ENSCSAVG00000007938 ENSCSAVG00000008181 ENSCSAVG00000008408 ENSCSAVG00000008410 ENSCSAVG00000008413 ENSCSAVG00000008422 ENSCSAVG00000008576 ENSCSAVG00000008594 ENSCSAVG00000008654 ENSCSAVG00000008681 ENSCSAVG00000008697 ENSCSAVG00000008717 ENSCSAVG00000008735 Ciona savignyi MODERN SPECIES 315 ENSCSAVG00000001445 ENSCSAVG00000001420 ENSCSAVG00000001413 ENSCSAVG00000001410 ENSCSAVG00000001407 ENSCSAVG00000001147 ENSCSAVG00000001144 ENSCSAVG00000001141 ENSCSAVG00000001140 ENSCSAVG00000001138 ENSCSAVG00000001135 ENSCSAVG00000001108 ENSCSAVG00000001102 ENSCSAVG00000001098 ENSCSAVG00000001095 ENSCSAVG00000001092 #25 ENSCSAVG00000001090 #25 Ciona savignyi MODERN SPECIES 263 ENSCSAVG00000008594 ENSCSAVG00000008576 ENSCSAVG00000008422 ENSCSAVG00000008413 ENSCSAVG00000008410 ENSCSAVG00000008408 ENSCSAVG00000008181 ENSCSAVG00000007938 ENSCSAVG00000007936 #32 ENSCSAVG00000007933 ENSCSAVG00000007927 #25 ENSCSAVG00000007925 ENSCSAVG00000007797 ENSCSAVG00000007795 #25 ENSCSAVG00000007793 ENSCSAVG00000007791 #25 ENSCSAVG00000007790 ENSCSAVG00000007789 ENSCSAVG00000007781 ENSCSAVG00000007778 ENSCSAVG00000007776 ENSCSAVG00000007774 ENSCSAVG00000007769 ENSCSAVG00000007753 ENSCSAVG00000007599 ENSCSAVG00000007367 ENSCSAVG00000007304 ENSCSAVG00000007179 ENSCSAVG00000007177 ENSCSAVG00000007172 ENSCSAVG00000007165 Ciona savignyi MODERN SPECIES 256 ENSCSAVG00000000523 ENSCSAVG00000000526 ENSCSAVG00000000527 #25 ENSCSAVG00000000528 ENSCSAVG00000000529 ENSCSAVG00000000530 ENSCSAVG00000000532 ENSCSAVG00000000534 ENSCSAVG00000000535 ENSCSAVG00000000536 ENSCSAVG00000000537 ENSCSAVG00000000538 ENSCSAVG00000000540 ENSCSAVG00000000547 ENSCSAVG00000000552 ENSCSAVG00000000565 ENSCSAVG00000000567 ENSCSAVG00000000596 Ciona savignyi MODERN SPECIES 263 ENSCSAVG00000007177 ENSCSAVG00000007179 ENSCSAVG00000007304 ENSCSAVG00000007367 ENSCSAVG00000007599 ENSCSAVG00000007753 ENSCSAVG00000007769 ENSCSAVG00000007774 ENSCSAVG00000007776 ENSCSAVG00000007778 ENSCSAVG00000007781 ENSCSAVG00000007789 ENSCSAVG00000007790 ENSCSAVG00000007791 #25 ENSCSAVG00000007793 ENSCSAVG00000007795 #25 ENSCSAVG00000007797 ENSCSAVG00000007925 ENSCSAVG00000007927 #25 ENSCSAVG00000007933 ENSCSAVG00000007936 #32 ENSCSAVG00000007938 ENSCSAVG00000008181 ENSCSAVG00000008408 ENSCSAVG00000008410 ENSCSAVG00000008413 ENSCSAVG00000008422 ENSCSAVG00000008576 ENSCSAVG00000008594 ENSCSAVG00000008654 ENSCSAVG00000008681 Ciona savignyi MODERN SPECIES 315 ENSCSAVG00000001090 #25 ENSCSAVG00000001092 #25 ENSCSAVG00000001095 ENSCSAVG00000001098 ENSCSAVG00000001102 ENSCSAVG00000001108 ENSCSAVG00000001135 ENSCSAVG00000001138 ENSCSAVG00000001140 ENSCSAVG00000001141 ENSCSAVG00000001144 ENSCSAVG00000001147 ENSCSAVG00000001407 ENSCSAVG00000001410 ENSCSAVG00000001413 ENSCSAVG00000001420