Bilateria ANCESTRAL SPECIES ENSGT01100000263504.a.b.a #22 Chordata DUPLICATION Chordata ANCESTRAL SPECIES ENSGT01100000263504.a.b.a.a #22 Vertebrata ANCESTRAL SPECIES ENSGT01100000263504.a.b.a.a #22 Gnathostomata ANCESTRAL SPECIES ENSGT01100000263504.a.b.a.a #22 Euteleostomi ANCESTRAL SPECIES 935 ENSGT00390000017267 ENSGT01090000260005.a.b.a.b.b ENSGT01100000263504.a.b.a.a #22 Sarcopterygii ANCESTRAL SPECIES 1146 ENSGT01100000263504.a.b.a.a #22 ENSGT00940000171204 Tetrapoda ANCESTRAL SPECIES 37 ENSGT00440000037341.b.b ENSGT00940000161445 ENSGT00390000014682 ENSGT00390000014139 ENSGT00940000161057 ENSGT00940000158344.b ENSGT00390000002548 ENSGT00390000005826.a.a ENSGT00940000158431.a.a.a.a.b.a ENSGT00940000160330 ENSGT00940000159112.b ENSGT00940000161901 ENSGT00940000159256 ENSGT00390000017267 ENSGT01090000260005.a.b.a.b.b ENSGT01100000263504.a.b.a.a #22 ENSGT00940000171204 ENSGT01100000263504.a.b.a.b.a.b ##35 ENSGT00940000161634 ENSGT00940000160281 ENSGT00940000160500 ENSGT00940000161895 ENSGT00530000063174.b ENSGT00940000153348.C ENSGT00950000183147.A.b.a ENSGT00940000161428 ENSGT00940000160457 ENSGT00390000015495 ENSGT00940000157823 ENSGT00940000155454 ENSGT00940000160232 Amniota ANCESTRAL SPECIES 12 ENSGT00390000013448.a.a ENSGT00570000079239 ENSGT00940000170165 ENSGT00950000182834.B ##8 ENSGT00940000153634.b ENSGT00950000182834.A.a.b.c #8 ENSGT00390000000412 ENSGT00940000165101 ENSGT00390000000417.a.a.b.a.b #11 ENSGT00940000157376 #13 ENSGT00390000018505 #15 ENSGT00390000002210.d #16 ENSGT00940000159576 #17 ENSGT00390000010056 #20 ENSGT00530000063402.b #21 ENSGT01100000263504.a.b.a.a #22 ENSGT00530000063651.a #23 ENSGT00940000162190 #24 ENSGT00390000003188 #25 ENSGT00940000156058 #26 ENSGT00390000008003 #27 ENSGT00940000156764.a #28 ENSGT00940000157923 #29 ENSGT00940000156810 #30 ENSGT01030000234517.H.b #31 ENSGT00390000007971 ENSGT00390000009379 ENSGT01030000234620.a.b.b.a ENSGT00620000087966.b ENSGT00940000158249 ENSGT01030000234517.G ##31 Mammalia ANCESTRAL SPECIES 21 ENSGT00390000003595 ENSGT00920000149199 ENSGT01090000260051.a ENSGT00390000011856 ENSGT00940000153578.A ENSGT00940000153335.a.a ENSGT00390000017589 ENSGT00940000157287 ENSGT00720000108861 ENSGT00900000141125 ENSGT00940000161851 ENSGT00940000154334.l ENSGT00530000063718.a.a ENSGT00730000110939.b ENSGT00940000159360 ENSGT01100000263504.a.b.a.a #22 ENSGT00950000183187.B ENSGT01100000263555.b ENSGT00390000007870 ENSGT00940000170136 ENSGT00940000157800 ENSGT00520000062027 ENSGT00930000151032.B ENSGT00940000155335 ENSGT00950000182906.a.a.b ENSGT00390000004214 ENSGT00940000158256 ENSGT00390000016550 ENSGT00940000181148 ENSGT00940000155738 ENSGT00550000074902 Theria ANCESTRAL SPECIES 9 ENSGT00390000003595 ENSGT00920000149199 ENSGT01090000260051.a ENSGT00390000011856 ENSGT00940000153578.A ENSGT00940000153335.a.a ENSGT00390000017589 ENSGT00940000157287 ENSGT00720000108861 ENSGT00900000141125 ENSGT00940000161851 ENSGT00940000154334.l ENSGT00530000063718.a.a ENSGT00730000110939.b ENSGT00940000159360 ENSGT01100000263504.a.b.a.a #22 ENSGT00950000183187.B ENSGT01100000263555.b ENSGT00390000007870 ENSGT00940000170136 ENSGT00940000157800 ENSGT00520000062027 ENSGT00930000151032.B ENSGT00940000155335 ENSGT00950000182906.a.a.b ENSGT00390000004214 ENSGT00940000158256 ENSGT00390000016550 ENSGT00940000181148 ENSGT00940000155738 ENSGT00550000074902 Eutheria ANCESTRAL SPECIES ENSGT00390000013448.a.a ENSGT00570000079239 ENSGT00950000182834.B ##8 ENSGT00940000153634.b ENSGT00950000182834.A.a.b.c #8 ENSGT00390000000412 ENSGT00940000160505 #9 ENSGT00390000000417.a.a.b.a.b #11 ENSGT00940000157376 #13 ENSGT00390000018505 #15 ENSGT00390000002210.d #16 ENSGT00940000159576 #17 ENSGT00950000183044.a.a.a.c #19 ENSGT00390000010056 #20 ENSGT00530000063402.b #21 ENSGT01100000263504.a.b.a.a #22 ENSGT01100000263504.a.b.b.a.b ##35 ENSGT00530000063651.a #23 ENSGT00940000162190 #24 ENSGT00390000003188 #25 ENSGT00940000156058 #26 ENSGT00390000008003 #27 ENSGT00940000156764.a #28 ENSGT00940000157923 #29 ENSGT00940000156810 #30 ENSGT01030000234517.H.b #31 ENSGT00390000018900 #32 ENSGT00940000163104 #33 ENSGT00390000004799 #34 ENSGT00390000005861 ENSGT00940000171704 Boreoeutheria ANCESTRAL SPECIES ENSGT00390000013448.a.a ENSGT00570000079239 ENSGT00950000182834.B ##8 ENSGT00940000153634.b ENSGT00950000182834.A.a.b.c #8 ENSGT00390000000412 ENSGT00940000160505 #9 ENSGT00390000000417.a.a.b.a.b #11 ENSGT00940000157376 #13 ENSGT00390000018505.b #15 ENSGT00390000002210.d #16 ENSGT00940000159576 #17 ENSGT00950000183044.a.a.a.c #19 ENSGT00390000010056 #20 ENSGT00530000063402.b #21 ENSGT01100000263504.a.b.a.a #22 ENSGT00530000063651.a #23 ENSGT00940000162190 #24 ENSGT00390000003188 #25 ENSGT00940000156058 #26 ENSGT00390000008003 #27 ENSGT00940000156764.a #28 ENSGT00940000157923 #29 ENSGT00940000156810 #30 ENSGT01030000234517.H.b #31 ENSGT00390000018900 #32 ENSGT00940000163104 #33 ENSGT00390000004799 #34 ENSGT00390000005861 ENSGT00940000171704 ENSGT00950000183142.a.b.a.b #36 Laurasiatheria ANCESTRAL SPECIES 28 ENSGT00390000013448.a.a ENSGT00570000079239 ENSGT00950000182834.B ##8 ENSGT00940000153634.b ENSGT00950000182834.A.a.b.c #8 ENSGT00390000000412 ENSGT00940000160505 #9 ENSGT00390000000417.a.a.b.a.b #11 ENSGT00940000157376 #13 ENSGT00390000018505.b #15 ENSGT00390000002210.d #16 ENSGT00940000159576 #17 ENSGT00950000183044.a.a.a.c #19 ENSGT00390000010056 #20 ENSGT00530000063402.b #21 ENSGT01100000263504.a.b.a.a #22 ENSGT00530000063651.a #23 ENSGT00940000162190 #24 ENSGT00390000003188 #25 ENSGT00940000156058 #26 ENSGT00390000008003 #27 ENSGT00940000156764.a #28 ENSGT00940000157923 #29 ENSGT00940000156810 #30 ENSGT01030000234517.H.b #31 ENSGT00390000018900 #32 ENSGT00940000163104 #33 ENSGT00390000004799 #34 ENSGT00390000005861 ENSGT00950000183142.a.b.a.b #36 ENSGT00910000148060 Laurasiatheria_a ANCESTRAL SPECIES ENSGT00390000013448.a.a ENSGT00570000079239 ENSGT00950000182834.B ##8 ENSGT00940000153634.b ENSGT00950000182834.A.a.b.c #8 ENSGT00390000000412 ENSGT00940000160505 #9 ENSGT00390000000417.a.a.b.a.b #11 ENSGT00940000157376 #13 ENSGT00390000018505.b #15 ENSGT00390000002210.d #16 ENSGT00940000159576 #17 ENSGT00950000183044.a.a.a.c #19 ENSGT00390000010056 #20 ENSGT00530000063402.b #21 ENSGT01100000263504.a.b.a.a #22 ENSGT00530000063651.a #23 ENSGT00940000162190 #24 ENSGT00390000003188 #25 ENSGT00940000156058 #26 ENSGT00390000008003 #27 ENSGT00940000156764.a #28 ENSGT00940000157923 #29 ENSGT00940000156810 #30 ENSGT01030000234517.H.b #31 ENSGT00390000018900 #32 ENSGT00940000163104 #33 ENSGT00390000004799 #34 ENSGT00390000005861 ENSGT00950000183142.a.b.a.b #36 ENSGT00910000148060 Artiodactyla ANCESTRAL SPECIES 25 ENSGT00390000013448.a.a ENSGT00570000079239 ENSGT00950000182834.B ##8 ENSGT00940000153634.b ENSGT00950000182834.A.a.b.c #8 ENSGT00390000000412 ENSGT00940000160505 #9 ENSGT00390000000417.a.a.b.a.b #11 ENSGT00940000157376 #13 ENSGT00390000018505.b #15 ENSGT00390000002210.d #16 ENSGT00940000159576 #17 ENSGT00950000183044.a.a.a.c #19 ENSGT00390000010056 #20 ENSGT00530000063402.b #21 ENSGT01100000263504.a.b.a.a #22 ENSGT01100000263504.a.b.b.a.b ##35 ENSGT00530000063651.a #23 ENSGT00940000162190 #24 ENSGT00390000003188 #25 ENSGT00940000156058 #26 ENSGT00390000008003 #27 ENSGT00940000156764.a #28 ENSGT00940000157923 #29 ENSGT00940000156810 #30 ENSGT01030000234517.H.b #31 ENSGT00390000018900 #32 ENSGT00940000163104 #33 ENSGT00390000004799 #34 ENSGT00390000005861 ENSGT00950000183142.a.b.a.b #36 Artiodactyla_a ANCESTRAL SPECIES 26 ENSGT00390000013448.a.a ENSGT00570000079239 ENSGT00950000182834.B ##8 ENSGT00940000153634.b ENSGT00950000182834.A.a.b.c #8 ENSGT00390000000412 ENSGT00940000160505 #9 ENSGT00390000000417.a.a.b.a.b #11 ENSGT00940000157376 #13 ENSGT00390000018505.b #15 ENSGT00390000002210.d #16 ENSGT00940000159576 #17 ENSGT00950000183044.a.a.a.c #19 ENSGT00390000010056 #20 ENSGT00530000063402.b #21 ENSGT01100000263504.a.b.a.a #22 ENSGT00530000063651.a #23 ENSGT00940000162190 #24 ENSGT00390000003188 #25 ENSGT00940000156058 #26 ENSGT00390000008003 #27 ENSGT00940000156764.a #28 ENSGT00940000157923 #29 ENSGT00940000156810 #30 ENSGT01030000234517.H.b #31 ENSGT00390000018900 #32 ENSGT00940000163104 #33 ENSGT00390000004799 #34 ENSGT00390000005861 ENSGT00950000183142.a.b.a.b #36 ENSGT00910000148060 Artiodactyla_b ANCESTRAL SPECIES 26 ENSGT00390000013448.a.a ENSGT00570000079239 ENSGT00950000182834.B ##8 ENSGT00940000153634.b ENSGT00950000182834.A.a.b.c #8 ENSGT00390000000412 ENSGT00940000160505 #9 ENSGT00390000000417.a.a.b.a.b #11 ENSGT00940000157376 #13 ENSGT00390000018505.b #15 ENSGT00390000002210.d #16 ENSGT00940000159576 #17 ENSGT00950000183044.a.a.a.c #19 ENSGT00390000010056 #20 ENSGT00530000063402.b #21 ENSGT01100000263504.a.b.a.a #22 ENSGT00530000063651.a #23 ENSGT00940000162190 #24 ENSGT00390000003188 #25 ENSGT00940000156058 #26 ENSGT00390000008003 #27 ENSGT00940000156764.a #28 ENSGT00940000157923 #29 ENSGT00940000156810 #30 ENSGT01030000234517.H.b #31 ENSGT00390000018900 #32 ENSGT00940000163104 #33 ENSGT00390000004799 #34 ENSGT00390000005861 ENSGT00950000183142.a.b.a.b #36 ENSGT00910000148060 Pecora ANCESTRAL SPECIES 22 ENSGT00390000013448.a.a ENSGT00570000079239 ENSGT00950000182834.B ##8 ENSGT00940000153634.b ENSGT00950000182834.A.a.b.c #8 ENSGT00390000000412 ENSGT00940000160505 #9 ENSGT00390000000417.a.a.b.a.b #11 ENSGT00940000157376 #13 ENSGT00390000018505.b #15 ENSGT00390000002210.d #16 ENSGT00940000159576 #17 ENSGT00950000183044.a.a.a.c #19 ENSGT00390000010056 #20 ENSGT00530000063402.b #21 ENSGT01100000263504.a.b.a.a #22 ENSGT00530000063651.a #23 ENSGT00940000162190 #24 ENSGT00390000003188 #25 ENSGT00940000156058 #26 ENSGT00390000008003 #27 ENSGT00940000156764.a #28 ENSGT00940000157923 #29 ENSGT00940000156810 #30 ENSGT01030000234517.H.b #31 ENSGT00390000018900 #32 ENSGT00940000163104 #33 ENSGT00390000004799 #34 ENSGT01100000263504.a.b.b.b.b #35 ENSGT00940000155028.q.a.c ENSGT00390000005861 Percora_a ANCESTRAL SPECIES 15 ENSGT00390000013448.a.a ENSGT00570000079239 ENSGT00950000182834.B ##8 ENSGT00940000153634.b ENSGT00950000182834.A.a.b.c #8 ENSGT00390000000412 ENSGT00940000160505 #9 ENSGT00390000000417.a.a.b.a.b #11 ENSGT00940000157376 #13 ENSGT00390000018505.b #15 ENSGT00390000002210.d #16 ENSGT00940000159576 #17 ENSGT00950000183044.a.a.a.c #19 ENSGT00390000010056 #20 ENSGT00530000063402.b #21 ENSGT01100000263504.a.b.a.a #22 ENSGT00530000063651.a #23 ENSGT00940000162190 #24 ENSGT00390000003188 #25 ENSGT00940000156058 #26 ENSGT00390000008003 #27 ENSGT00940000156764.a #28 ENSGT00940000157923 #29 ENSGT00940000156810 #30 ENSGT01030000234517.H.b #31 ENSGT00390000018900 #32 ENSGT00940000163104 #33 ENSGT00390000004799 #34 ENSGT01100000263504.a.b.b.b.b #35 ENSGT00940000155028.q.a.c ENSGT00390000005861 Bovidae ANCESTRAL SPECIES 15 ENSGT00570000079239 ENSGT00950000182834.B ##8 ENSGT00940000153634.b ENSGT00950000182834.A.a.b.c #8 ENSGT00390000000412 ENSGT00940000160505 #9 ENSGT00390000000417.a.a.b.a.b #11 ENSGT00940000157376 #13 ENSGT00390000018505.b #15 ENSGT00390000002210.d #16 ENSGT00940000159576 #17 ENSGT00390000010056.tb #18 ENSGT00950000183044.a.a.a.c #19 ENSGT00390000010056.ub #20 ENSGT00530000063402.b #21 ENSGT01100000263504.a.b.a.a #22 ENSGT00530000063651.a #23 ENSGT00940000162190 #24 ENSGT00390000003188 #25 ENSGT00940000156058 #26 ENSGT00390000008003 #27 ENSGT00940000156764.a #28 ENSGT00940000157923 #29 ENSGT00940000156810 #30 ENSGT01030000234517.H.b #31 ENSGT00390000018900 #32 ENSGT00940000163104 #33 ENSGT00390000004799 #34 ENSGT01100000263504.a.b.b.b.b #35 ENSGT00940000155028.q.a.c ENSGT00390000005861 Caprinae ANCESTRAL SPECIES 1 ENSGT00390000003595 ENSGT00920000149199 ENSGT01090000260051.a ENSGT00390000011856 ENSGT00940000153578.A ENSGT00940000153335.a.a ENSGT00390000017589 ENSGT00940000157287 ENSGT00720000108861 ENSGT00900000141125 ENSGT00940000161851 ENSGT00940000154334.l ENSGT00530000063718.a.a ENSGT00730000110939.b ENSGT00940000159360 ENSGT01100000263504.a.b.a.a #22 ENSGT00950000183187.B ENSGT01100000263555.b ENSGT00390000007870 ENSGT00940000157800 ENSGT00520000062027 ENSGT00930000151032.B ENSGT00950000182906.a.a.b ENSGT00390000004214 ENSGT00940000158256 ENSGT00390000016550 ENSGT00940000155738 ENSGT00550000074902 ENSGT00940000153432.A.a ENSGT00390000014620 ENSGT00940000157333 Rambouillet Sheep MODERN SPECIES 3 ENSOARG00020016393 #7 CNIH3 (ENSOARG00020016440) #8 DNAH14 (ENSOARG00020016617) #9 ENSOARG00020017311 #10 LBR (ENSOARG00020017338) #11 ENAH (ENSOARG00020017437) #12 ENSOARG00020018058 #13 ENSOARG00020018102 #14 SRP9 (ENSOARG00020018121) #15 EPHX1 (ENSOARG00020018225) #16 TMEM63A (ENSOARG00020018308) #17 ENSOARG00020018411 #18 PYCR2 (ENSOARG00020018457) #19 ENSOARG00020018575 #20 SDE2 (ENSOARG00020018625) #21 H3F3A (ENSOARG00020018672) #22 ACBD3 (ENSOARG00020018756) #23 MIXL1 (ENSOARG00020018842) #24 LIN9 (ENSOARG00020018902) #25 PARP1 (ENSOARG00020019277) #26 STUM (ENSOARG00020019418) #27 ITPKB (ENSOARG00020019465) #28 PSEN2 (ENSOARG00020019535) #29 COQ8A (ENSOARG00020019681) #30 CDC42BPA (ENSOARG00020019926) #31 AHCTF1 (ENSOARG00020003268) #32 ENSOARG00020003724 #33 SCCPDH (ENSOARG00020003810) #34 ENSOARG00020003854 #35 TFB2M (ENSOARG00020003896) #36 SMYD3 (ENSOARG00020003928) #37 Goat MODERN SPECIES 10 EXOC7 (ENSCHIG00000010786) GALR2 (ENSCHIG00000017151) SRP68 (ENSCHIG00000009842) ENSCHIG00000026103 CDK3 (ENSCHIG00000019794) TEN1 (ENSCHIG00000009483) ENSCHIG00000014913 ACOX1 (ENSCHIG00000021549) FBF1 (ENSCHIG00000023306) MRPL38 (ENSCHIG00000016277) TRIM65 (ENSCHIG00000022135) TRIM47 (ENSCHIG00000016592) WBP2 (ENSCHIG00000025622) UNC13D (ENSCHIG00000023322) UNK (ENSCHIG00000015385) ENSCHIG00000023303 #22 GALK1 (ENSCHIG00000004957) ITGB4 (ENSCHIG00000005571) SAP30BP (ENSCHIG00000021087) RECQL5 (ENSCHIG00000009742) SMIM5 (ENSCHIG00000025984) ENSCHIG00000026451 ENSCHIG00000019066 LLGL2 (ENSCHIG00000013481) TSEN54 (ENSCHIG00000019908) CASKIN2 (ENSCHIG00000021700) TMEM94 (ENSCHIG00000013867) GRB2 (ENSCHIG00000016061) SLC25A19 (ENSCHIG00000004195) MIF4GD (ENSCHIG00000006682) MRPS7 (ENSCHIG00000026974) Bovinae ANCESTRAL SPECIES 12 ENSGT00570000079239 ENSGT00950000182834.B ##8 ENSGT00940000153634.b ENSGT00950000182834.A.a.b.c #8 ENSGT00390000000412 ENSGT00940000160505 #9 ENSGT00390000000417.a.a.b.a.b #11 ENSGT00940000157376 #13 ENSGT00390000018505.b #15 ENSGT00390000002210.d #16 ENSGT00940000159576 #17 ENSGT00390000010056.tb #18 ENSGT00950000183044.a.a.a.c #19 ENSGT00390000010056.ub #20 ENSGT00530000063402.b #21 ENSGT01100000263504.a.b.a.a #22 ENSGT00530000063651.a #23 ENSGT00940000162190 #24 ENSGT00390000003188 #25 ENSGT00940000156058 #26 ENSGT01100000263474.a.b.b.e.a.b.a ENSGT00390000008003 #27 ENSGT00940000156764.a #28 ENSGT00940000157923 #29 ENSGT00940000156810 #30 ENSGT01030000234517.H.b #31 ENSGT00390000018900 #32 ENSGT00940000163104 #33 ENSGT00390000004799 #34 ENSGT01100000263504.a.b.b.b.b #35 ENSGT00940000155028.q.a.c Bos ANCESTRAL SPECIES 12 ENSGT00570000079239 ENSGT00950000182834.B ##8 ENSGT00940000153634.b ENSGT00950000182834.A.a.b.c #8 ENSGT00390000000412 ENSGT00940000160505 #9 ENSGT00390000000417.a.a.b.a.b #11 ENSGT00940000157376 #13 ENSGT00390000018505.b #15 ENSGT00390000002210.d #16 ENSGT00940000159576 #17 ENSGT00390000010056.tb #18 ENSGT00950000183044.a.a.a.c #19 ENSGT00390000010056.ub #20 ENSGT00530000063402.b #21 ENSGT01100000263504.a.b.a.a #22 ENSGT00530000063651.a #23 ENSGT00940000162190 #24 ENSGT00390000003188 #25 ENSGT00940000156058.l #26 ENSGT01100000263474.a.b.b.e.a.b.a ENSGT00390000008003 #27 ENSGT00940000156764.a #28 ENSGT00940000157923 #29 ENSGT00940000156810 #30 ENSGT01030000234517.H.b #31 ENSGT00390000018900 #32 ENSGT00940000163104 #33 ENSGT00390000004799 #34 ENSGT01100000263504.a.b.b.b.b #35 ENSGT00940000155028.q.a.c Bos_a ANCESTRAL SPECIES 8 ENSGT00570000079239 ENSGT00950000182834.B ##8 ENSGT00940000153634.b ENSGT00950000182834.A.a.b.c #8 ENSGT00390000000412 ENSGT00940000160505 #9 ENSGT00390000000417.a.a.b.a.b #11 ENSGT00940000157376 #13 ENSGT00390000018505.b #15 ENSGT00390000002210.d #16 ENSGT00940000159576 #17 ENSGT00390000010056.tb #18 ENSGT00950000183044.a.a.a.c #19 ENSGT00390000010056.ub #20 ENSGT00530000063402.b #21 ENSGT01100000263504.a.b.a.a #22 ENSGT00530000063651.a #23 ENSGT00940000162190 #24 ENSGT00390000003188 #25 ENSGT00940000156058.l #26 ENSGT00390000008003 #27 ENSGT00940000156764.a #28 ENSGT00940000157923 #29 ENSGT00940000156810 #30 ENSGT01030000234517.H.b #31 ENSGT00390000018900 #32 ENSGT00940000163104 #33 ENSGT00390000004799 #34 ENSGT01100000263504.a.b.b.b.b #35 ENSGT00940000155028.q.a.c ENSGT00390000005861 Wild yak DUPLICATION Wild yak MODERN SPECIES 1666 DSPP (ENSBMUG00000025197) SPARCL1 (ENSBMUG00000025191) NUDT9 (ENSBMUG00000025184) HSD17B11 (ENSBMUG00000025178) HSD17B13 (ENSBMUG00000025176) ENSBMUG00000025168 #22 KLHL8 (ENSBMUG00000025163) AFF1 (ENSBMUG00000025155) Wild yak MODERN SPECIES 1893 PYCR2 (ENSBMUG00000015566) #19 ENSBMUG00000015525 #20 SDE2 (ENSBMUG00000015514) #21 ENSBMUG00000015502 #22 ACBD3 (ENSBMUG00000015476) #23 MIXL1 (ENSBMUG00000015459) #24 LIN9 (ENSBMUG00000015437) #25 ENSBMUG00000014506 #26 Camelidae ANCESTRAL SPECIES ENSGT01100000263504.a.b.a.a #22 Alpaca MODERN SPECIES 4801 ENSVPAG00000005851 #22 Laurasiatheria_b ANCESTRAL SPECIES ENSGT00390000013448.a.a ENSGT00570000079239 ENSGT00950000182834.B ##8 ENSGT00940000153634.b ENSGT00950000182834.A.a.b.c #8 ENSGT00390000000412 ENSGT00940000160505 #9 ENSGT00390000000417.a.a.b.a.b #11 ENSGT00940000157376 #13 ENSGT00390000018505.b #15 ENSGT00390000002210.d #16 ENSGT00940000159576 #17 ENSGT00950000183044.a.a.a.c #19 ENSGT00390000010056 #20 ENSGT00530000063402.b #21 ENSGT01100000263504.a.b.a.a #22 ENSGT00530000063651.a #23 ENSGT00940000162190 #24 ENSGT00390000003188 #25 ENSGT00940000156058 #26 ENSGT00390000008003 #27 ENSGT00940000156764.a #28 ENSGT00940000157923 #29 ENSGT00940000156810 #30 ENSGT01030000234517.H.b #31 ENSGT00390000018900 #32 ENSGT00940000163104 #33 ENSGT00390000004799 #34 ENSGT00390000005861 ENSGT00950000183142.a.b.a.b #36 ENSGT00940000156766 #37 Laurasiatheria_c ANCESTRAL SPECIES ENSGT01100000263504.a.b.a.a #22 Chiroptera ANCESTRAL SPECIES ENSGT01100000263504.a.b.a.a #22 Microchiroptera ANCESTRAL SPECIES ENSGT00390000003595 ENSGT00920000149199 ENSGT01090000260051.a ENSGT00390000011856 ENSGT00940000153578.A ENSGT00940000153335.a.a ENSGT00390000017589 ENSGT00940000157287 ENSGT00720000108861 ENSGT00900000141125 ENSGT00940000161851 ENSGT00940000154334.l ENSGT00530000063718.a.a ENSGT00730000110939.b ENSGT00940000159360 ENSGT01100000263504.a.b.a.a #22 ENSGT00950000183187.B ENSGT01100000263555.b ENSGT00390000007870 ENSGT00520000062027 ENSGT00940000157800 ENSGT00930000151032.B ENSGT00950000182906.a.a.b ENSGT00390000004214 ENSGT00940000158256 ENSGT00390000016550 ENSGT00940000155738 ENSGT00550000074902 ENSGT00940000153432.A.a ENSGT00390000014620 ENSGT00940000157333 Microbat MODERN SPECIES 1419 ACOX1 (ENSMLUG00000001210) FBF1 (ENSMLUG00000001196) MRPL38 (ENSMLUG00000006296) ENSMLUG00000006291 TRIM47 (ENSMLUG00000014887) UNK (ENSMLUG00000015453) ENSMLUG00000015447 #22 GALK1 (ENSMLUG00000015425) ITGB4 (ENSMLUG00000015402) SAP30BP (ENSMLUG00000015391) RECQL5 (ENSMLUG00000015374) ENSMLUG00000015365 LLGL2 (ENSMLUG00000015307) TSEN54 (ENSMLUG00000015298) CASKIN2 (ENSMLUG00000015284) TMEM94 (ENSMLUG00000015265) GRB2 (ENSMLUG00000015262) SLC25A19 (ENSMLUG00000015251) MIF4GD (ENSMLUG00000015242) MRPS7 (ENSMLUG00000015237) GGA3 (ENSMLUG00000015225) NUP85 (ENSMLUG00000015211) Greater horseshoe bat DUPLICATION Greater horseshoe bat MODERN SPECIES 15 ASIP (ENSRFEG00010007692) AHCY (ENSRFEG00010007632) ITCH (ENSRFEG00010007315) MAP1LC3A (ENSRFEG00010007180) PIGU (ENSRFEG00010007108) TP53INP2 (ENSRFEG00010007077) NCOA6 (ENSRFEG00010006952) GGT7 (ENSRFEG00010006853) ACSS2 (ENSRFEG00010006759) GSS (ENSRFEG00010006666) MYH7B (ENSRFEG00010006291) TRPC4AP (ENSRFEG00010006148) EDEM2 (ENSRFEG00010006007) PROCR (ENSRFEG00010019162) MMP24 (ENSRFEG00010019093) ENSRFEG00010019080 #22 EIF6 (ENSRFEG00010019027) FAM83C (ENSRFEG00010018993) UQCC1 (ENSRFEG00010018830) GDF5 (ENSRFEG00010018734) CEP250 (ENSRFEG00010018666) C20orf173 (ENSRFEG00010018613) ERGIC3 (ENSRFEG00010018538) ENSRFEG00010018119 SPAG4 (ENSRFEG00010017962) CPNE1 (ENSRFEG00010017487) NFS1 (ENSRFEG00010017113) BT_r333_jsm650C3f (ENSRFEG00010017053) ENSRFEG00010017015 RBM39 (ENSRFEG00010016851) PHF20 (ENSRFEG00010016802) Greater horseshoe bat MODERN SPECIES 21 RSPO3 (ENSRFEG00010000629) RNF146 (ENSRFEG00010000661) ECHDC1 (ENSRFEG00010000716) KIAA0408 (ENSRFEG00010000751) SOGA3 (ENSRFEG00010000772) C6orf58 (ENSRFEG00010000795) THEMIS (ENSRFEG00010000809) PTPRK (ENSRFEG00010000904) ENSRFEG00010001147 ENSRFEG00010001167 LAMA2 (ENSRFEG00010001231) ARHGAP18 (ENSRFEG00010001288) L3MBTL3 (ENSRFEG00010001369) SAMD3 (ENSRFEG00010001420) TMEM200A (ENSRFEG00010001439) ENSRFEG00010001446 #22 SMLR1 (ENSRFEG00010001459) EPB41L2 (ENSRFEG00010001686) AKAP7 (ENSRFEG00010002254) ENSRFEG00010002394 ARG1 (ENSRFEG00010002426) MED23 (ENSRFEG00010002484) ENPP3 (ENSRFEG00010002657) ENPP1 (ENSRFEG00010002710) CTGF (ENSRFEG00010002751) ENSRFEG00010002771 MOXD1 (ENSRFEG00010002794) STX7 (ENSRFEG00010002842) TAAR9 (ENSRFEG00010002902) ENSRFEG00010002913 ENSRFEG00010002933 Carnivora ANCESTRAL SPECIES 14 ENSGT00390000013448.a.a ENSGT00570000079239 ENSGT00950000182834.B ##8 ENSGT00940000153634.b ENSGT00950000182834.A.a.b.c #8 ENSGT00390000000412 ENSGT00940000160505 #9 ENSGT00390000000417.a.a.b.a.b #11 ENSGT00940000157376 #13 ENSGT00390000018505.b #15 ENSGT00390000002210.d #16 ENSGT00940000159576 #17 ENSGT00950000183044.a.a.a.c #19 ENSGT00390000010056 #20 ENSGT00530000063402.b #21 ENSGT01100000263504.a.b.a.a #22 ENSGT00530000063651.a #23 ENSGT00940000162190 #24 ENSGT00390000003188 #25 ENSGT00940000156058 #26 ENSGT00390000008003 #27 ENSGT00940000156764.a #28 ENSGT00940000157923 #29 ENSGT00940000156810 #30 ENSGT01030000234517.H.b #31 ENSGT00390000018900 #32 ENSGT00940000163104 #33 ENSGT00390000004799 #34 ENSGT00390000005861 ENSGT00950000183142.a.b.a.b #36 ENSGT00940000156766 #37 Caniformia ANCESTRAL SPECIES 10 ENSGT00390000013448.a.a ENSGT00570000079239 ENSGT00950000182834.B ##8 ENSGT00940000153634.b ENSGT00950000182834.A.a.b.c #8 ENSGT00390000000412 ENSGT00940000160505 #9 ENSGT00390000000417.a.a.b.a.b #11 ENSGT00940000157376 #13 ENSGT00390000018505.b #15 ENSGT00390000002210.d #16 ENSGT00940000159576 #17 ENSGT00950000183044.a.a.a.c #19 ENSGT00390000010056 #20 ENSGT00530000063402.b #21 ENSGT01100000263504.a.b.a.a #22 ENSGT00530000063651.a #23 ENSGT00940000162190 #24 ENSGT00390000003188 #25 ENSGT00940000156058 #26 ENSGT00390000008003 #27 ENSGT00940000156764.a #28 ENSGT00940000157923 #29 ENSGT00940000156810 #30 ENSGT01030000234517.H.b #31 ENSGT00390000018900 #32 ENSGT00940000163104 #33 ENSGT00390000004799 #34 ENSGT00390000005861 ENSGT00950000183142.a.b.a.b #36 ENSGT00940000156766 #37 Caniformia_b ANCESTRAL SPECIES ENSGT01100000263504.a.b.a.a #22 Ursidae ANCESTRAL SPECIES ENSGT01100000263504.a.b.a.a #22 Giant Panda MODERN SPECIES 1005 ENSAMEG00000025127 #22 Canidae ANCESTRAL SPECIES 1 ENSGT00570000079239 ENSGT00950000182834.B ##8 ENSGT00940000153634.b ENSGT00950000182834.A.a.b.c #8 ENSGT00950000182891.a.a.b.a.a.a.b.a.a.x.a ENSGT00390000000412 ENSGT00940000160505 #9 ENSGT00390000000417.a.a.b.a.b #11 ENSGT00940000157376 #13 ENSGT00390000018505.b #15 ENSGT00390000002210.d #16 ENSGT00940000159576 #17 ENSGT00950000183044.a.a.a.c #19 ENSGT00390000010056 #20 ENSGT00530000063402.b #21 ENSGT01100000263504.a.b.a.a #22 ENSGT00530000063651.a #23 ENSGT00940000162190 #24 ENSGT00390000003188 #25 ENSGT00940000156058 #26 ENSGT00390000008003 #27 ENSGT00940000156764.a #28 ENSGT00940000157923 #29 ENSGT00940000156810 #30 ENSGT01030000234517.H.b #31 ENSGT00390000018900 #32 ENSGT00940000163104 #33 ENSGT00390000004799 #34 ENSGT00390000005861 ENSGT00950000183142.a.b.a.b #36 ENSGT00940000156766 #37 Canis_lupus ANCESTRAL SPECIES 4 ENSGT00950000182834.B ##8 ENSGT00940000153634.b ENSGT00950000182834.A.a.b.c #8 ENSGT00950000182891.a.a.b.a.a.a.b.a.a.x.a ENSGT00950000183123.g.a.a.b ENSGT00390000000412 ENSGT00940000160505 #9 ENSGT00390000000417.a.a.b.a.b #11 ENSGT00940000157376 #13 ENSGT00390000018505.b #15 ENSGT00390000002210.d #16 ENSGT00940000159576 #17 ENSGT00950000183044.a.a.a.c #19 ENSGT00390000010056 #20 ENSGT00530000063402.b #21 ENSGT01100000263504.a.b.a.a #22 ENSGT00530000063651.a #23 ENSGT00390000000411.g.b ENSGT01030000238203 ENSGT00390000003188 #25 ENSGT00940000156058 #26 ENSGT00390000008003 #27 ENSGT00940000156764.a #28 ENSGT00940000157923 #29 ENSGT00940000156810 #30 ENSGT00390000018900 #32 ENSGT00940000178689 ENSGT00950000183029.B.c.b.b.b.i.b ENSGT00390000004799 #34 ENSGT00390000005861 ENSGT00950000183142.a.b.a.b #36 Dog MODERN SPECIES 35 WDR26 (ENSCAFG00845012382) CNIH3 (ENSCAFG00845012278) #8 ENSCAFG00845012260 ENSCAFG00845012247 DNAH14 (ENSCAFG00845011498) #9 LBR (ENSCAFG00845010980) #11 ENAH (ENSCAFG00845009892) #13 SRP9 (ENSCAFG00845009505) #15 EPHX1 (ENSCAFG00845009397) #16 TMEM63A (ENSCAFG00845009155) #17 ENSCAFG00845009114 #20 PYCR2 (ENSCAFG00845009034) #19 ENSCAFG00845009009 ENSCAFG00845008972 #20 SDE2 (ENSCAFG00845008939) #21 ENSCAFG00845008917 #22 ACBD3 (ENSCAFG00845008884) #23 ENSCAFG00845008860 MIXL1 (ENSCAFG00845008836) #24 LIN9 (ENSCAFG00845008477) #25 PARP1 (ENSCAFG00845008325) #26 STUM (ENSCAFG00845008283) #27 ITPKB (ENSCAFG00845008212) #28 PSEN2 (ENSCAFG00845008023) #29 COQ8A (ENSCAFG00845007817) #30 ENSCAFG00845007754 CDC42BPA (ENSCAFG00845007016) #31 AHCTF1 (ENSCAFG00845006427) #32 ENSCAFG00845006225 #33 ENSCAFG00845006160 SCCPDH (ENSCAFG00845006130) #34 Red fox MODERN SPECIES 45 DEGS1 (ENSVVUG00000003871) NVL (ENSVVUG00000003759) CNIH4 (ENSVVUG00000003749) ##8 WDR26 (ENSVVUG00000002391) ENSVVUG00000002268 ENSVVUG00000002263 ENSVVUG00000002178 #9 ENSVVUG00000002137 #9 LBR (ENSVVUG00000002114) #11 ENSVVUG00000002093 #13 SRP9 (ENSVVUG00000002065) #15 EPHX1 (ENSVVUG00000002017) #16 TMEM63A (ENSVVUG00000001946) #17 PYCR2 (ENSVVUG00000001865) #19 SDE2 (ENSVVUG00000001852) #21 ENSVVUG00000001818 #22 ACBD3 (ENSVVUG00000001698) #23 ENSVVUG00000001692 #24 LIN9 (ENSVVUG00000001682) #25 PARP1 (ENSVVUG00000001655) #26 STUM (ENSVVUG00000001575) #27 ITPKB (ENSVVUG00000001558) #28 PSEN2 (ENSVVUG00000001510) #29 COQ8A (ENSVVUG00000001434) #30 ENSVVUG00000001391 CDC42BPA (ENSVVUG00000001137) #31 AHCTF1 (ENSVVUG00000000955) #32 SCCPDH (ENSVVUG00000000879) #34 CNST (ENSVVUG00000000780) ENSVVUG00000000650 #36 ENSVVUG00000000542 #37 Felidae ANCESTRAL SPECIES 11 ENSGT00390000002970 ENSGT00390000013448.a.a ENSGT00570000079239 ENSGT00950000182834.B ##8 ENSGT00940000153634.b ENSGT00950000182834.A.a.b.c #8 ENSGT00940000160505 #9 ENSGT00390000000417.a.a.b.a.b #11 ENSGT00940000157376 #13 ENSGT00390000018505.b #15 ENSGT00390000002210.d #16 ENSGT00940000159576 #17 ENSGT00950000183044.a.a.a.c #19 ENSGT00390000010056 #20 ENSGT00530000063402.b #21 ENSGT01100000263504.a.b.a.a #22 ENSGT00530000063651.a #23 ENSGT00940000162190 #24 ENSGT00390000003188 #25 ENSGT00940000156058 #26 ENSGT00390000008003 #27 ENSGT00940000156764.a #28 ENSGT00940000157923 #29 ENSGT00940000156810 #30 ENSGT01030000234517.H.b #31 ENSGT00390000018900 #32 ENSGT00940000163104 #33 ENSGT00390000004799 #34 ENSGT00390000005861 ENSGT00950000183142.a.b.a.b #36 ENSGT00940000156766 #37 Panthera ANCESTRAL SPECIES 22 ENSGT00390000003595 ENSGT00920000149199 ENSGT01090000260051.a ENSGT00390000011856 ENSGT00940000153578.A ENSGT00940000153335.a.a ENSGT00390000017589 ENSGT00940000157287 ENSGT00720000108861 ENSGT00900000141125 ENSGT00940000161851 ENSGT00940000154334.l ENSGT00530000063718.a.a ENSGT00730000110939.b ENSGT00940000159360 ENSGT01100000263504.a.b.a.a #22 ENSGT00950000183187.B ENSGT01100000263555.b ENSGT00390000007870 ENSGT00940000157800 ENSGT00940000165228 ENSGT00520000062027 ENSGT00930000151032.B ENSGT00940000155335 ENSGT00950000182906.a.a.b ENSGT00390000004214 ENSGT00940000158256 ENSGT00390000016550 ENSGT00940000155738 ENSGT00550000074902 ENSGT00940000153432.A.a Panthera_a ANCESTRAL SPECIES 25 ENSGT00390000003595 ENSGT00920000149199 ENSGT01090000260051.a ENSGT00390000011856 ENSGT00940000153578.A ENSGT00940000153335.a.a ENSGT00390000017589 ENSGT00940000157287 ENSGT00720000108861 ENSGT00900000141125 ENSGT00940000161851 ENSGT00940000154334.l ENSGT00530000063718.a.a ENSGT00730000110939.b ENSGT00940000159360 ENSGT01100000263504.a.b.a.a #22 ENSGT00950000183187.B ENSGT01100000263555.b ENSGT00390000007870 ENSGT00940000157800 ENSGT00940000165228 ENSGT00520000062027 ENSGT00930000151032.B ENSGT00950000182906.a.a.b ENSGT00390000004214 ENSGT00940000158256 ENSGT00390000016550 ENSGT00940000155738 ENSGT00550000074902 ENSGT00940000153432.A.a ENSGT00390000014620 leopard MODERN SPECIES 48 EXOC7 (ENSPPRG00000022218) ZACN (ENSPPRG00000005339) GALR2 (ENSPPRG00000004457) SRP68 (ENSPPRG00000004278) ENSPPRG00000002492 CDK3 (ENSPPRG00000022805) TEN1 (ENSPPRG00000023117) ACOX1 (ENSPPRG00000023330) FBF1 (ENSPPRG00000023680) MRPL38 (ENSPPRG00000013859) TRIM65 (ENSPPRG00000013032) TRIM47 (ENSPPRG00000012820) WBP2 (ENSPPRG00000012059) UNC13D (ENSPPRG00000010231) UNK (ENSPPRG00000008948) ENSPPRG00000008892 #22 GALK1 (ENSPPRG00000008039) ITGB4 (ENSPPRG00000007492) SAP30BP (ENSPPRG00000005238) RECQL5 (ENSPPRG00000004541) ENSPPRG00000003260 SMIM6 (ENSPPRG00000016437) SMIM5 (ENSPPRG00000001878) ENSPPRG00000001524 LLGL2 (ENSPPRG00000011496) TSEN54 (ENSPPRG00000009162) CASKIN2 (ENSPPRG00000008893) TMEM94 (ENSPPRG00000007619) GRB2 (ENSPPRG00000004519) SLC25A19 (ENSPPRG00000003012) MIF4GD (ENSPPRG00000001215) lion DUPLICATION lion MODERN SPECIES 17 TP53BP2 (ENSPLOG00000021069) FBXO28 (ENSPLOG00000021127) DEGS1 (ENSPLOG00000021159) NVL (ENSPLOG00000021217) CNIH4 (ENSPLOG00000021368) ##8 WDR26 (ENSPLOG00000021417) CNIH3 (ENSPLOG00000021466) #8 DNAH14 (ENSPLOG00000021571) #9 LBR (ENSPLOG00000005582) #11 ENAH (ENSPLOG00000005749) #13 SRP9 (ENSPLOG00000005890) #15 EPHX1 (ENSPLOG00000005936) #16 TMEM63A (ENSPLOG00000006070) #17 PYCR2 (ENSPLOG00000006197) #19 SDE2 (ENSPLOG00000006268) #21 ENSPLOG00000006310 #22 ACBD3 (ENSPLOG00000006338) #23 LIN9 (ENSPLOG00000006364) #25 PARP1 (ENSPLOG00000006420) #26 STUM (ENSPLOG00000006487) #27 ITPKB (ENSPLOG00000006512) #28 PSEN2 (ENSPLOG00000006537) #29 COQ8A (ENSPLOG00000006581) #30 CDC42BPA (ENSPLOG00000006680) #31 AHCTF1 (ENSPLOG00000006807) #32 ENSPLOG00000007118 #33 SCCPDH (ENSPLOG00000007254) #34 CNST (ENSPLOG00000007297) TFB2M (ENSPLOG00000007355) #36 SMYD3 (ENSPLOG00000007373) #37 KIF26B (ENSPLOG00000007502) lion MODERN SPECIES 14 EXOC7 (ENSPLOG00000008501) ZACN (ENSPLOG00000008665) GALR2 (ENSPLOG00000008737) SRP68 (ENSPLOG00000008793) ENSPLOG00000008941 CDK3 (ENSPLOG00000009238) TEN1 (ENSPLOG00000009295) ACOX1 (ENSPLOG00000009370) FBF1 (ENSPLOG00000009657) MRPL38 (ENSPLOG00000010033) TRIM65 (ENSPLOG00000010056) TRIM47 (ENSPLOG00000010086) WBP2 (ENSPLOG00000010195) UNC13D (ENSPLOG00000010330) UNK (ENSPLOG00000010594) ENSPLOG00000010634 #22 ENSPLOG00000010696 ITGB4 (ENSPLOG00000010837) SAP30BP (ENSPLOG00000011693) RECQL5 (ENSPLOG00000011958) SMIM6 (ENSPLOG00000012155) SMIM5 (ENSPLOG00000012170) ENSPLOG00000012316 LLGL2 (ENSPLOG00000013411) TSEN54 (ENSPLOG00000013461) CASKIN2 (ENSPLOG00000013587) TMEM94 (ENSPLOG00000014091) GRB2 (ENSPLOG00000014679) SLC25A19 (ENSPLOG00000014750) MIF4GD (ENSPLOG00000014790) MRPS7 (ENSPLOG00000014877) Eulipotyphla ANCESTRAL SPECIES 567 ENSGT01100000263504.a.b.a.a #22 ENSGT00950000183187.B ENSGT01100000263555.b Hedgehog MODERN SPECIES 2920 ENSEEUG00000015682 #22 GALK1 (ENSEEUG00000015670) ITGB4 (ENSEEUG00000015501) Euarchontoglires ANCESTRAL SPECIES ENSGT00390000013448.a.a ENSGT00570000079239 ENSGT00950000182834.B ##8 ENSGT00940000153634.b ENSGT00950000182834.A.a.b.c #8 ENSGT00390000000412 ENSGT00940000160505 #9 ENSGT00390000000417.a.a.b.a.b #11 ENSGT00940000157376 #13 ENSGT00390000018505.b #15 ENSGT00390000002210.d #16 ENSGT00940000159576 #17 ENSGT00950000183044.a.a.a.c #19 ENSGT00390000010056 #20 ENSGT00530000063402.b #21 ENSGT01100000263504.a.b.a.a #22 ENSGT01100000263504.a.b.b.a.b.c ##35 ENSGT00530000063651.a #23 ENSGT00940000162190 #24 ENSGT00390000003188 #25 ENSGT00940000156058 #26 ENSGT00390000008003 #27 ENSGT00940000156764.a #28 ENSGT00940000157923 #29 ENSGT00940000156810 #30 ENSGT01030000234517.H.b #31 ENSGT00390000018900 #32 ENSGT00940000163104 #33 ENSGT00390000004799 #34 ENSGT00390000005861 ENSGT00940000171704 Primates ANCESTRAL SPECIES 7 ENSGT00390000013448.a.a ENSGT00570000079239 ENSGT00950000182834.B ##8 ENSGT00940000153634.b ENSGT00950000182834.A.a.b.c #8 ENSGT00390000000412 ENSGT00940000160505 #9 ENSGT00390000000417.a.a.b.a.b #11 ENSGT00940000157376 #13 ENSGT00390000018505.b #15 ENSGT00390000002210.d #16 ENSGT00940000159576 #17 ENSGT00950000183044.a.a.a.c #19 ENSGT00390000010056 #20 ENSGT00530000063402.b #21 ENSGT01100000263504.a.b.a.a #22 ENSGT01100000263504.a.b.b.a.b.c ##35 ENSGT00530000063651.a #23 ENSGT00940000162190 #24 ENSGT00390000003188 #25 ENSGT00940000156058 #26 ENSGT00390000008003 #27 ENSGT00940000156764.a #28 ENSGT00940000157923 #29 ENSGT00940000156810 #30 ENSGT01030000234517.H.b #31 ENSGT00390000018900 #32 ENSGT00390000004799 #34 ENSGT00390000005861 ENSGT00950000183142.a.b.a.b #36 ENSGT00940000156766 #37 Strepsirrhini ANCESTRAL SPECIES 4 ENSGT00920000149199 ENSGT01090000260051.a ENSGT00390000011856 ENSGT00940000153578.A ENSGT00940000153335.a.a ENSGT00390000017589 ENSGT00940000157287 ENSGT00720000108861 ENSGT00900000141125 ENSGT00940000161851 ENSGT00940000154334.l ENSGT00530000063718.a.a ENSGT00730000110939.b ENSGT00940000159360 ENSGT01100000263504.a.a.yb ##35 ENSGT01100000263504.a.b.a.a #22 ENSGT00950000183187.B ENSGT01100000263555.b ENSGT00390000007870 ENSGT00520000062027 ENSGT00940000157800 ENSGT00930000151032.B ENSGT00950000182906.a.a.b ENSGT00390000004214 ENSGT00940000158256 ENSGT00390000016550 ENSGT00940000155738 ENSGT00550000074902 ENSGT00940000153432.A.a ENSGT00390000014620 ENSGT00940000157333 Bushbaby MODERN SPECIES 299 SDC3 (ENSOGAG00000031276) PUM1 (ENSOGAG00000011063) NKAIN1 (ENSOGAG00000004537) ENSOGAG00000004538 ZCCHC17 (ENSOGAG00000013749) FABP3 (ENSOGAG00000013757) PGAM1 (ENSOGAG00000027180) SERINC2 (ENSOGAG00000013759) TINAGL1 (ENSOGAG00000004594) HCRTR1 (ENSOGAG00000004595) PEF1 (ENSOGAG00000004597) COL16A1 (ENSOGAG00000004599) ADGRB2 (ENSOGAG00000006787) SPOCD1 (ENSOGAG00000016702) PTP4A2 (ENSOGAG00000029603) ENSOGAG00000026969 #22 KHDRBS1 (ENSOGAG00000004582) ENSOGAG00000004583 Lemuriformes ANCESTRAL SPECIES 2 ENSGT00390000003595 ENSGT00920000149199 ENSGT01090000260051.a ENSGT00390000011856 ENSGT00940000153578.A ENSGT00940000153335.a.a ENSGT00390000017589 ENSGT00940000157287 ENSGT00720000108861 ENSGT00900000141125 ENSGT00940000161851 ENSGT00940000154334.l ENSGT00530000063718.a.a ENSGT00730000110939.b ENSGT00940000159360 ENSGT01100000263504.a.b.a.a #22 ENSGT00950000183187.B ENSGT01100000263555.b ENSGT00390000007870 ENSGT00940000157800 ENSGT00520000062027 ENSGT00930000151032.B ENSGT00950000182906.a.a.b ENSGT00390000004214 ENSGT00940000158256 ENSGT00390000016550 ENSGT00940000155738 ENSGT00550000074902 ENSGT00940000153432.A.a ENSGT00390000014620 ENSGT00940000157333 Lemuriformes_a ANCESTRAL SPECIES 18 ENSGT00390000003595 ENSGT00920000149199 ENSGT01090000260051.a ENSGT00390000011856 ENSGT00940000153578.A ENSGT00940000153335.a.a ENSGT00390000017589 ENSGT00940000157287 ENSGT00720000108861 ENSGT00900000141125 ENSGT00940000161851 ENSGT00940000154334.l ENSGT00530000063718.a.a ENSGT00730000110939.b ENSGT00940000159360 ENSGT01100000263504.a.b.a.a #22 ENSGT00950000183187.B ENSGT01100000263555.b ENSGT00390000007870 ENSGT00520000062027 ENSGT00940000157800 ENSGT00930000151032.B ENSGT00950000182906.a.a.b ENSGT00390000004214 ENSGT00940000158256 ENSGT00390000016550 ENSGT00940000155738 ENSGT00550000074902 ENSGT00940000153432.A.a ENSGT00390000014620 ENSGT00940000157333 Coquerels sifaka MODERN SPECIES 892 EXOC7 (ENSPCOG00000028217) ZACN (ENSPCOG00000016757) GALR2 (ENSPCOG00000014187) SRP68 (ENSPCOG00000026772) EVPL (ENSPCOG00000013688) CDK3 (ENSPCOG00000023342) TEN1 (ENSPCOG00000025329) ACOX1 (ENSPCOG00000022848) FBF1 (ENSPCOG00000023624) MRPL38 (ENSPCOG00000028871) TRIM65 (ENSPCOG00000027183) TRIM47 (ENSPCOG00000026132) WBP2 (ENSPCOG00000012493) UNC13D (ENSPCOG00000026684) UNK (ENSPCOG00000027411) ENSPCOG00000022673 #22 GALK1 (ENSPCOG00000019252) ITGB4 (ENSPCOG00000025620) SAP30BP (ENSPCOG00000018378) SMIM5 (ENSPCOG00000005213) RECQL5 (ENSPCOG00000000050) ENSPCOG00000026940 LLGL2 (ENSPCOG00000020994) TSEN54 (ENSPCOG00000027880) CASKIN2 (ENSPCOG00000013857) TMEM94 (ENSPCOG00000023796) GRB2 (ENSPCOG00000020735) SLC25A19 (ENSPCOG00000028872) MIF4GD (ENSPCOG00000026945) MRPS7 (ENSPCOG00000014568) GGA3 (ENSPCOG00000028689) Haplorrhini ANCESTRAL SPECIES 7 ENSGT00390000013448.a.a ENSGT00570000079239 ENSGT00950000182834.B ##8 ENSGT00940000153634.b ENSGT00950000182834.A.a.b.c #8 ENSGT00390000000412 ENSGT00940000160505 #9 ENSGT00390000000417.a.a.b.a.b #11 ENSGT00940000157376 #13 ENSGT00390000018505.b #15 ENSGT00390000002210.d #16 ENSGT00940000159576 #17 ENSGT00950000183044.a.a.a.c #19 ENSGT00390000010056 #20 ENSGT00530000063402.b #21 ENSGT01100000263504.a.b.a.a #22 ENSGT01100000263504.a.b.b.a.b.c ##35 ENSGT00530000063651.a #23 ENSGT00940000162190 #24 ENSGT00390000003188 #25 ENSGT00940000156058 #26 ENSGT00390000008003 #27 ENSGT00940000156764.a #28 ENSGT00940000157923 #29 ENSGT00940000156810 #30 ENSGT01030000234517.H.b #31 Tarsier MODERN SPECIES 2493 ENSTSYG00000036227 #22 Simiiformes ANCESTRAL SPECIES 8 ENSGT00390000013448.a.a ENSGT00570000079239 ENSGT00950000182834.B ##8 ENSGT00940000153634.b ENSGT00950000182834.A.a.b.c #8 ENSGT00390000000412 ENSGT00940000160505 #9 ENSGT00390000000417.a.a.b.a.b #11 ENSGT00940000157376 #13 ENSGT00390000018505.b #15 ENSGT00390000002210.d #16 ENSGT00940000159576 #17 ENSGT00950000183044.a.a.a.c #19 ENSGT00390000010056 #20 ENSGT00530000063402.b #21 ENSGT01100000263504.a.b.a.a #22 ENSGT01100000263504.a.b.b.a.b.c ##35 ENSGT00530000063651.a #23 ENSGT00940000162190 #24 ENSGT00390000003188 #25 ENSGT00940000156058 #26 ENSGT00390000008003 #27 ENSGT00940000156764.a #28 ENSGT00940000157923 #29 ENSGT00940000156810 #30 ENSGT01030000234517.H.b #31 Catarrhini ANCESTRAL SPECIES 10 ENSGT00570000079239 ENSGT00950000182834.B ##8 ENSGT00940000153634.b ENSGT00940000153272.a.b.o.b.b ENSGT00950000182834.A.a.b.c #8 ENSGT00390000000412 ENSGT00940000160505 #9 ENSGT00390000000417.a.a.b.a.b #11 ENSGT00940000157376 #13 ENSGT00390000018505.b #15 ENSGT00390000002210.d #16 ENSGT00940000159576 #17 ENSGT00950000183044.a.a.a.c #19 ENSGT00390000010056 #20 ENSGT00530000063402.b #21 ENSGT01100000263504.a.b.a.a #22 ENSGT00530000063651.a #23 ENSGT00940000162190 #24 ENSGT00390000003188 #25 ENSGT00940000156058 #26 ENSGT00390000008003 #27 ENSGT00940000156764.a #28 ENSGT00940000157923 #29 ENSGT00940000156810 #30 ENSGT01030000234517.H.b #31 ENSGT00910000148176 ENSGT00940000159380 ENSGT00950000182843.b ENSGT00940000154494.a ENSGT00940000159618 ENSGT00940000160510 Hominoidea ANCESTRAL SPECIES 7 ENSGT00950000182834.B ##8 ENSGT00940000153634.b ENSGT00940000153272.a.b.o.b.b ENSGT00950000182834.A.a.b.c #8 ENSGT00390000000412 ENSGT00940000160505 #9 ENSGT00390000000417.a.a.b.a.b #11 ENSGT00940000157376 #13 ENSGT00390000018505.b #15 ENSGT00390000002210.d #16 ENSGT00940000159576 #17 ENSGT00390000010056.q.b #20 ENSGT00950000183044.a.a.a.c #19 ENSGT00390000010056.q.a #20 ENSGT00530000063402.b #21 ENSGT01100000263504.a.b.a.a #22 ENSGT00530000063651.a #23 ENSGT00940000162190 #24 ENSGT00390000003188 #25 ENSGT00940000156058 #26 ENSGT00940000157177.i.b ENSGT00390000008003 #27 ENSGT00940000156764.a #28 ENSGT00940000157923 #29 ENSGT00940000156810 #30 ENSGT01030000234517.H.b #31 ENSGT00940000154251.A.a.a.a ENSGT00910000147389 ENSGT00940000159380 ENSGT00950000182843.b ENSGT00940000154494.a Hominidae ANCESTRAL SPECIES 6 ENSGT00570000079239 ENSGT00950000182834.B ##8 ENSGT00940000153634.b ENSGT00950000182834.A.a.b.c #8 ENSGT00390000000412 ENSGT00940000160505 #9 ENSGT00390000000417.a.a.b.a.b #11 ENSGT00940000157376 #13 ENSGT00390000018505.b #15 ENSGT00390000002210.d #16 ENSGT00940000159576 #17 ENSGT00390000010056.q.b #20 ENSGT00950000183044.a.a.a.c #19 ENSGT00390000010056.q.a #20 ENSGT00530000063402.b #21 ENSGT01100000263504.a.b.a.a #22 ENSGT01100000263504.a.b.b.a.b.c ##35 ENSGT00530000063651.a #23 ENSGT00940000162190 #24 ENSGT00390000003188 #25 ENSGT00940000156058 #26 ENSGT00940000157177.i.b ENSGT00390000008003 #27 ENSGT00940000156764.a #28 ENSGT00940000157923 #29 ENSGT00940000156810 #30 ENSGT01030000234517.H.b #31 ENSGT00940000154251.A.a.a.a ENSGT00940000159380 ENSGT00950000182843.b ENSGT00940000154494.a Orangutan MODERN SPECIES CNIH4 (ENSPPYG00000040381) ##8 WDR26 (ENSPPYG00000000182) ENSPPYG00000002704 CNIH3 (ENSPPYG00000000181) #8 DNAH14 (ENSPPYG00000039314) #9 LBR (ENSPPYG00000000176) #11 ENSPPYG00000000175 #13 SRP9 (ENSPPYG00000000174) #15 ENSPPYG00000000173 #16 EPHX1 (ENSPPYG00000039616) #16 TMEM63A (ENSPPYG00000029911) #17 LEFTY1 (ENSPPYG00000033926) #20 PYCR2 (ENSPPYG00000000171) #19 LEFTY2 (ENSPPYG00000030151) #20 SDE2 (ENSPPYG00000000169) #21 ENSPPYG00000000168 #22 ENSPPYG00000032085 ACBD3 (ENSPPYG00000029541) #23 MIXL1 (ENSPPYG00000000166) #24 ENSPPYG00000000165 #25 PARP1 (ENSPPYG00000000164) #26 STUM (ENSPPYG00000000162) #27 ITPKB (ENSPPYG00000000161) #28 PSEN2 (ENSPPYG00000000160) #29 COQ8A (ENSPPYG00000000159) #30 CDC42BPA (ENSPPYG00000000158) #31 ENSPPYG00000000155 JMJD4 (ENSPPYG00000000154) SNAP47 (ENSPPYG00000000153) PRSS38 (ENSPPYG00000000152) WNT9A (ENSPPYG00000000151) Homo/Pan/Gorilla group ANCESTRAL SPECIES 6 ENSGT00570000079239 ENSGT00950000182834.B ##8 ENSGT00940000153634.b ENSGT00950000182834.A.a.b.c #8 ENSGT00390000000412 ENSGT00940000160505 #9 ENSGT00390000000417.a.a.b.a.b #11 ENSGT00940000157376 #13 ENSGT00390000018505.b #15 ENSGT00390000002210.d #16 ENSGT00940000159576 #17 ENSGT00390000010056.q.b #20 ENSGT00950000183044.a.a.a.c #19 ENSGT00390000010056.q.a #20 ENSGT00530000063402.b #21 ENSGT01100000263504.a.b.a.a #22 ENSGT00530000063651.a #23 ENSGT00940000162190 #24 ENSGT00390000003188 #25 ENSGT00940000156058 #26 ENSGT00940000157177.i.b ENSGT00390000008003 #27 ENSGT00940000156764.a #28 ENSGT00940000157923 #29 ENSGT00940000156810 #30 ENSGT01030000234517.H.b #31 ENSGT00940000154251.A.a.a.a ENSGT00940000159380 ENSGT00910000147389 ENSGT00950000182843.b ENSGT00940000154494.a Gorilla MODERN SPECIES 4 ENSGGOG00000022544 PCDH17 (ENSGGOG00000038108) ENSGGOG00000039321 DIAPH3 (ENSGGOG00000001745) ENSGGOG00000028580 TDRD3 (ENSGGOG00000025560) ENSGGOG00000039777 ENSGGOG00000038146 PCDH20 (ENSGGOG00000005530) ENSGGOG00000022721 ENSGGOG00000041716 PCDH9 (ENSGGOG00000004371) ENSGGOG00000038927 KLHL1 (ENSGGOG00000015147) DACH1 (ENSGGOG00000004058) ENSGGOG00000009197 #22 MZT1 (ENSGGOG00000039307) BORA (ENSGGOG00000004468) DIS3 (ENSGGOG00000006630) PIBF1 (ENSGGOG00000011491) KLF5 (ENSGGOG00000003245) ENSGGOG00000010447 KLF12 (ENSGGOG00000004142) ENSGGOG00000023270 TBC1D4 (ENSGGOG00000015734) ENSGGOG00000008976 UCHL3 (ENSGGOG00000015683) LMO7 (ENSGGOG00000012590) ENSGGOG00000026015 ENSGGOG00000037865 ACOD1 (ENSGGOG00000014878) Homo/Pan group ANCESTRAL SPECIES 2 ENSGT00390000003595 ENSGT00920000149199 ENSGT01090000260051.a ENSGT00390000011856 ENSGT00940000153578.A.c ENSGT00940000153335.a.a ENSGT00390000017589 ENSGT00940000157287 ENSGT00720000108861 ENSGT00900000141125 ENSGT00940000161851 ENSGT00940000154334.l ENSGT00530000063718.a.a ENSGT00730000110939.b ENSGT00940000159360 ENSGT01100000263504.a.b.a.a #22 ENSGT00950000183187.B ENSGT01100000263555.b ENSGT00390000007870 ENSGT00940000165228 ENSGT00520000062027 ENSGT00940000157800 ENSGT00930000151032.B ENSGT00950000182906.a.a.b ENSGT00390000004214 ENSGT00940000158256 ENSGT00390000016550 ENSGT00940000161656.r ENSGT00940000155738 ENSGT00550000074902 ENSGT00940000153432.A.a Pan ANCESTRAL SPECIES 3 ENSGT00390000003595 ENSGT00920000149199 ENSGT01090000260051.a ENSGT00390000011856 ENSGT00940000153578.A.c ENSGT00940000153335.a.a ENSGT00390000017589 ENSGT00940000157287 ENSGT00720000108861 ENSGT00900000141125 ENSGT00940000161851 ENSGT00940000154334.l ENSGT00530000063718.a.a ENSGT00730000110939.b ENSGT00940000159360 ENSGT01100000263504.a.b.a.a #22 ENSGT00950000183187.B ENSGT01100000263555.b ENSGT00390000007870 ENSGT00940000165228 ENSGT00520000062027 ENSGT00940000157800 ENSGT00930000151032.B ENSGT00950000182906.a.a.b ENSGT00390000004214 ENSGT00940000158256 ENSGT00390000016550 ENSGT00940000161656.r ENSGT00940000155738 ENSGT00550000074902 ENSGT00940000153432.A.a Bonobo MODERN SPECIES 8 EXOC7 (ENSPPAG00000038827) ZACN (ENSPPAG00000036441) GALR2 (ENSPPAG00000031083) SRP68 (ENSPPAG00000029018) EVPL (ENSPPAG00000028982) CDK3 (ENSPPAG00000038619) TEN1 (ENSPPAG00000043907) ACOX1 (ENSPPAG00000036022) FBF1 (ENSPPAG00000042628) MRPL38 (ENSPPAG00000043735) ENSPPAG00000035634 TRIM47 (ENSPPAG00000028112) WBP2 (ENSPPAG00000003545) UNC13D (ENSPPAG00000018143) UNK (ENSPPAG00000032800) ENSPPAG00000037659 #22 GALK1 (ENSPPAG00000025985) ITGB4 (ENSPPAG00000017376) SAP30BP (ENSPPAG00000029956) SMIM6 (ENSPPAG00000006693) SMIM5 (ENSPPAG00000035228) RECQL5 (ENSPPAG00000034423) MYO15B (ENSPPAG00000025068) LLGL2 (ENSPPAG00000028840) TSEN54 (ENSPPAG00000043519) CASKIN2 (ENSPPAG00000033859) TMEM94 (ENSPPAG00000043879) ENSPPAG00000000113 GRB2 (ENSPPAG00000028137) SLC25A19 (ENSPPAG00000036265) MIF4GD (ENSPPAG00000019610) Chimpanzee MODERN SPECIES DEGS1 (ENSPTRG00000002023) NVL (ENSPTRG00000046422) CNIH4 (ENSPTRG00000002025) ##8 WDR26 (ENSPTRG00000002026) CNIH3 (ENSPTRG00000002027) #8 DNAH14 (ENSPTRG00000050408) #9 LBR (ENSPTRG00000002036) #11 ENAH (ENSPTRG00000002037) #13 SRP9 (ENSPTRG00000002038) #15 EPHX1 (ENSPTRG00000002039) #16 TMEM63A (ENSPTRG00000002040) #17 LEFTY1 (ENSPTRG00000049763) #20 PYCR2 (ENSPTRG00000002042) #19 LEFTY2 (ENSPTRG00000002043) #20 SDE2 (ENSPTRG00000002044) #21 H3-3A (ENSPTRG00000002045) #22 ACBD3 (ENSPTRG00000002046) #23 MIXL1 (ENSPTRG00000049290) #24 LIN9 (ENSPTRG00000002048) #25 PARP1 (ENSPTRG00000002049) #26 ENSPTRG00000043266 STUM (ENSPTRG00000030135) #27 ITPKB (ENSPTRG00000002051) #28 PSEN2 (ENSPTRG00000002052) #29 COQ8A (ENSPTRG00000033741) #30 CDC42BPA (ENSPTRG00000042934) #31 ZNF678 (ENSPTRG00000002057) JMJD4 (ENSPTRG00000002059) ENSPTRG00000048948 SNAP47 (ENSPTRG00000002060) PRSS38 (ENSPTRG00000002061) Gibbon DUPLICATION Gibbon MODERN SPECIES 23 GBA2 (ENSNLEG00000004159) CREB3 (ENSNLEG00000004179) TLN1 (ENSNLEG00000004224) TPM2 (ENSNLEG00000004274) CA9 (ENSNLEG00000031756) ARHGEF39 (ENSNLEG00000004351) CCDC107 (ENSNLEG00000004365) SIT1 (ENSNLEG00000032199) CD72 (ENSNLEG00000034608) TESK1 (ENSNLEG00000031377) ENSNLEG00000004511 RUSC2 (ENSNLEG00000004449) ENSNLEG00000032146 UNC13B (ENSNLEG00000004514) ENSNLEG00000018373 ENSNLEG00000032255 #22 ATOSB (ENSNLEG00000004530) STOML2 (ENSNLEG00000004539) PIGO (ENSNLEG00000004616) FANCG (ENSNLEG00000004654) VCP (ENSNLEG00000004704) C9orf131 (ENSNLEG00000004743) DNAJB5 (ENSNLEG00000029383) ENSNLEG00000004754 ENSNLEG00000034908 ENSNLEG00000034510 ENSNLEG00000033475 ENSNLEG00000035392 CCL21 (ENSNLEG00000004768) ENSNLEG00000004787 GALT (ENSNLEG00000004796) Gibbon MODERN SPECIES 20 NVL (ENSNLEG00000013437) ENSNLEG00000032458 ##8 WDR26 (ENSNLEG00000013555) ENSNLEG00000033301 CNIH3 (ENSNLEG00000032625) #8 ENSNLEG00000013644 LBR (ENSNLEG00000027476) #11 ENSNLEG00000013693 #13 SRP9 (ENSNLEG00000013740) #15 EPHX1 (ENSNLEG00000013747) #16 TMEM63A (ENSNLEG00000013755) #17 LEFTY1 (ENSNLEG00000036199) #20 PYCR2 (ENSNLEG00000026763) #19 ENSNLEG00000013769 #20 SDE2 (ENSNLEG00000013788) #21 ENSNLEG00000013798 #22 ACBD3 (ENSNLEG00000034130) #23 MIXL1 (ENSNLEG00000032618) #24 LIN9 (ENSNLEG00000013837) #25 PARP1 (ENSNLEG00000013905) #26 ENSNLEG00000032044 ENSNLEG00000013913 #27 ITPKB (ENSNLEG00000013915) #28 PSEN2 (ENSNLEG00000013924) #29 COQ8A (ENSNLEG00000013937) #30 CDC42BPA (ENSNLEG00000013980) #31 ZNF678 (ENSNLEG00000008917) ENSNLEG00000031801 JMJD4 (ENSNLEG00000032639) SNAP47 (ENSNLEG00000014097) PRSS38 (ENSNLEG00000014112) Cercopithecidae ANCESTRAL SPECIES 20 ENSGT00950000182834.B ##8 ENSGT00940000153634.b ENSGT00940000153272.a.b.o.b.b ENSGT00950000182834.A.a.b.c #8 ENSGT00390000000412 ENSGT00940000160505 #9 ENSGT00390000000417.a.a.b.a.b #11 ENSGT00940000157376 #13 ENSGT00390000018505.b #15 ENSGT00390000002210.d #16 ENSGT00940000159576 #17 ENSGT00390000010056.o #20 ENSGT00950000183044.a.a.a.c #19 ENSGT00390000010056.p #20 ENSGT00530000063402.b #21 ENSGT01100000263504.a.b.a.a #22 ENSGT00530000063651.a #23 ENSGT00940000162190 #24 ENSGT00390000003188 #25 ENSGT00940000156058 #26 ENSGT00390000008003 #27 ENSGT00940000156764.a #28 ENSGT00940000157923 #29 ENSGT00940000156810 #30 ENSGT01030000234517.H.b #31 ENSGT00910000148176 ENSGT00940000153165.a.a.d.i.a ENSGT00940000159380 ENSGT00950000182843.b ENSGT00940000154494.a ENSGT00940000159618 Cercopithecinae ANCESTRAL SPECIES 18 ENSGT00950000182834.B ##8 ENSGT00940000153634.b ENSGT00940000153272.a.b.o.b.b ENSGT00950000182834.A.a.b.c #8 ENSGT00390000000412 ENSGT00940000160505 #9 ENSGT00390000000417.a.a.b.a.b #11 ENSGT00940000157376 #13 ENSGT00390000018505.b #15 ENSGT00390000002210.d #16 ENSGT00940000159576 #17 ENSGT00390000010056.o #20 ENSGT00950000183044.a.a.a.c #19 ENSGT00390000010056.p #20 ENSGT00530000063402.b #21 ENSGT01100000263504.a.b.a.a #22 ENSGT01100000263504.a.b.b.a.b.c ##35 ENSGT00530000063651.a #23 ENSGT00940000162190 #24 ENSGT00390000003188 #25 ENSGT00940000156058 #26 ENSGT00390000008003 #27 ENSGT00940000156764.a #28 ENSGT00940000157923 #29 ENSGT00940000156810 #30 ENSGT01030000234517.H.b #31 ENSGT01090000260030.b ENSGT00940000159380 ENSGT00950000182843.b ENSGT00940000154494.a ENSGT00940000159618 Vervet Monkey MODERN SPECIES 203 SYP (ENSCSAG00000012877) ENSCSAG00000012869 CCDC22 (ENSCSAG00000012858) FOXP3 (ENSCSAG00000012845) PPP1R3F (ENSCSAG00000012839) ENSCSAG00000012831 ENSCSAG00000012821 PAGE1 (ENSCSAG00000012814) PAGE4 (ENSCSAG00000012798) USP27X (ENSCSAG00000000130) CLCN5 (ENSCSAG00000012790) AKAP4 (ENSCSAG00000012776) CCNB3 (ENSCSAG00000012755) DGKK (ENSCSAG00000012745) SHROOM4 (ENSCSAG00000012729) ENSCSAG00000000129 #22 BMP15 (ENSCSAG00000012723) ENSCSAG00000012719 ENSCSAG00000012705 EZHIP (ENSCSAG00000012701) ENSCSAG00000012692 ENSCSAG00000000128 ENSCSAG00000000127 GSPT2 (ENSCSAG00000000126) MAGED1 (ENSCSAG00000012685) ENSCSAG00000012678 ENSCSAG00000012672 ENSCSAG00000012666 ENSCSAG00000012657 XAGE2 (ENSCSAG00000012647) GPR173 (ENSCSAG00000000125) Cercopithecinae_a ANCESTRAL SPECIES ENSGT00950000182834.B ##8 ENSGT00940000153634.b ENSGT00940000153272.a.b.o.b.b ENSGT00950000182834.A.a.b.c #8 ENSGT00390000000412 ENSGT00940000160505 #9 ENSGT00390000000417.a.a.b.a.b #11 ENSGT00940000157376 #13 ENSGT00390000018505.b #15 ENSGT00390000002210.d #16 ENSGT00940000159576 #17 ENSGT00390000010056.o #20 ENSGT00950000183044.a.a.a.c #19 ENSGT00390000010056.p #20 ENSGT00530000063402.b #21 ENSGT01100000263504.a.b.a.a #22 ENSGT01100000263504.a.b.b.a.b.c.l.b ##35 ENSGT00530000063651.a #23 ENSGT00940000162190 #24 ENSGT00390000003188 #25 ENSGT00940000156058 #26 ENSGT00390000008003 #27 ENSGT00940000156764.a #28 ENSGT00940000157923 #29 ENSGT00940000156810 #30 ENSGT01030000234517.H.b #31 ENSGT01090000260030.b ENSGT00940000159380 ENSGT00950000182843.b ENSGT00910000148086 ENSGT00940000154494.a Cercopithecinae_b ANCESTRAL SPECIES ENSGT01100000263504.a.b.a.a #22 Olive baboon MODERN SPECIES 19 ETFBKMT (ENSPANG00000048959) AMN1 (ENSPANG00000025713) RESF1 (ENSPANG00000009884) BICD1 (ENSPANG00000004473) FGD4 (ENSPANG00000021903) DNM1L (ENSPANG00000017980) YARS2 (ENSPANG00000015833) PKP2 (ENSPANG00000009883) SYT10 (ENSPANG00000018998) ENSPANG00000006000 CPNE8 (ENSPANG00000013195) KIF21A (ENSPANG00000017444) ABCD2 (ENSPANG00000015335) C12orf40 (ENSPANG00000018245) SLC2A13 (ENSPANG00000019087) HIST1H3A (ENSPANG00000037957) #22 LRRK2 (ENSPANG00000010275) ENSPANG00000044765 ENSPANG00000047329 CNTN1 (ENSPANG00000022088) PDZRN4 (ENSPANG00000007816) ENSPANG00000049095 GXYLT1 (ENSPANG00000022965) PPHLN1 (ENSPANG00000009967) ENSPANG00000042854 ENSPANG00000038616 ENSPANG00000048843 ZCRB1 (ENSPANG00000010274) PRICKLE1 (ENSPANG00000005856) ADAMTS20 (ENSPANG00000015479) ENSPANG00000044997 Macaca ANCESTRAL SPECIES ENSGT00570000079239 ENSGT00950000182834.B ##8 ENSGT00940000153634.b ENSGT00950000182834.A.a.b.c #8 ENSGT00390000000412 ENSGT00940000160505 #9 ENSGT00390000000417.a.a.b.a.b #11 ENSGT00940000157376 #13 ENSGT00390000018505.b #15 ENSGT00390000002210.d #16 ENSGT00940000159576 #17 ENSGT00390000010056.o #20 ENSGT00950000183044.a.a.a.c #19 ENSGT00390000010056.p #20 ENSGT00530000063402.b #21 ENSGT01100000263504.a.b.a.a #22 ENSGT00530000063651.a #23 ENSGT01030000238203 ENSGT00390000003188 #25 ENSGT00940000156058 #26 ENSGT00390000008003 #27 ENSGT00940000156764.a #28 ENSGT00940000157923 #29 ENSGT00940000156810 #30 ENSGT01030000234517.H.b #31 ENSGT01090000260030.b ENSGT00940000159380 ENSGT00950000182843.b ENSGT00910000148086 ENSGT00940000154494.a ENSGT00940000159618 Macaca_a ANCESTRAL SPECIES ENSGT00950000182834.B ##8 ENSGT00940000153634.b ENSGT00950000182834.A.a.b.c #8 ENSGT00940000160505 #9 ENSGT00390000000417.a.a.b.a.b #11 ENSGT00940000157376 #13 ENSGT00390000018505.b #15 ENSGT00940000173703 ENSGT00390000018505.a.a ##15 ENSGT00390000002210.d #16 ENSGT00940000159576 #17 ENSGT00390000010056.o #20 ENSGT00390000010056.p #20 ENSGT00950000183044.a.a.a.c.d #19 ENSGT00530000063402.b #21 ENSGT01100000263504.a.b.a.a #22 ENSGT01040000240755.A.b.b.a ENSGT00530000063651.a #23 ENSGT00950000183105.B.a.a.b ENSGT00940000162190 #24 ENSGT00390000003188 #25 ENSGT00940000161627.a.b.a.a.b ENSGT00940000156058 #26 ENSGT00390000008003 #27 ENSGT00940000156764.a #28 ENSGT00940000157923 #29 ENSGT00940000156810 #30 ENSGT01030000234517.H.b #31 ENSGT01090000260030.b ENSGT00940000159380 ENSGT00950000182843.b Crab-eating macaque MODERN SPECIES ENSMFAG00000003807 FBXO28 (ENSMFAG00000000604) DEGS1 (ENSMFAG00000039054) NVL (ENSMFAG00000003164) CNIH4 (ENSMFAG00000003700) ##8 WDR26 (ENSMFAG00000036710) CNIH3 (ENSMFAG00000039040) #8 DNAH14 (ENSMFAG00000036618) #9 LBR (ENSMFAG00000034066) #11 ENAH (ENSMFAG00000019058) #13 SRP9 (ENSMFAG00000002641) #15 ENSMFAG00000051570 ENSMFAG00000039504 #20 ENSMFAG00000031760 #19 SDE2 (ENSMFAG00000031291) #21 ENSMFAG00000045269 #22 ENSMFAG00000050027 ENSMFAG00000048787 ACBD3 (ENSMFAG00000045670) #23 ENSMFAG00000051300 ENSMFAG00000027604 LIN9 (ENSMFAG00000001110) #25 ENSMFAG00000062286 PARP1 (ENSMFAG00000002526) #26 STUM (ENSMFAG00000035398) #27 ITPKB (ENSMFAG00000035876) #28 ENSMFAG00000053714 ENSMFAG00000054654 PSEN2 (ENSMFAG00000000107) #29 COQ8A (ENSMFAG00000045043) #30 CDC42BPA (ENSMFAG00000036131) #31 Rhesus MODERN SPECIES TEX50 (ENSMMUG00000052807) KLHL20 (ENSMMUG00000016792) CENPL (ENSMMUG00000008572) DARS2 (ENSMMUG00000022798) ZBTB37 (ENSMMUG00000022801) SERPINC1 (ENSMMUG00000000629) RC3H1 (ENSMMUG00000000630) ENSMMUG00000064770 RABGAP1L (ENSMMUG00000001565) CACYBP (ENSMMUG00000001571) MRPS14 (ENSMMUG00000051176) TNN (ENSMMUG00000000545) KIAA0040 (ENSMMUG00000000546) TNR (ENSMMUG00000015723) COP1 (ENSMMUG00000059669) ENSMMUG00000063647 #22 PAPPA2 (ENSMMUG00000023214) ASTN1 (ENSMMUG00000023216) BRINP2 (ENSMMUG00000022935) SEC16B (ENSMMUG00000020320) RASAL2 (ENSMMUG00000021073) ENSMMUG00000053325 CLEC20A (ENSMMUG00000056058) TEX35 (ENSMMUG00000054486) RALGPS2 (ENSMMUG00000017551) ANGPTL1 (ENSMMUG00000017553) FAM20B (ENSMMUG00000006260) TOR3A (ENSMMUG00000006261) ABL2 (ENSMMUG00000006262) ENSMMUG00000049630 SOAT1 (ENSMMUG00000003768) Pig-tailed macaque DUPLICATION Pig-tailed macaque MODERN SPECIES 432 EXOC7 (ENSMNEG00000034370) ZACN (ENSMNEG00000033868) GALR2 (ENSMNEG00000041199) SRP68 (ENSMNEG00000034783) EVPL (ENSMNEG00000033170) CDK3 (ENSMNEG00000028067) TEN1 (ENSMNEG00000030918) ACOX1 (ENSMNEG00000039353) FBF1 (ENSMNEG00000028846) MRPL38 (ENSMNEG00000025535) TRIM65 (ENSMNEG00000037740) TRIM47 (ENSMNEG00000040185) WBP2 (ENSMNEG00000042076) UNC13D (ENSMNEG00000023958) UNK (ENSMNEG00000036240) ENSMNEG00000028325 #22 GALK1 (ENSMNEG00000039872) ITGB4 (ENSMNEG00000036570) SAP30BP (ENSMNEG00000032576) SMIM5 (ENSMNEG00000032209) RECQL5 (ENSMNEG00000040154) MYO15B (ENSMNEG00000025709) LLGL2 (ENSMNEG00000028345) TSEN54 (ENSMNEG00000029199) CASKIN2 (ENSMNEG00000027134) TMEM94 (ENSMNEG00000031672) GRB2 (ENSMNEG00000036872) SLC25A19 (ENSMNEG00000036328) MIF4GD (ENSMNEG00000022755) MRPS7 (ENSMNEG00000022424) GGA3 (ENSMNEG00000042786) Pig-tailed macaque MODERN SPECIES 102 NVL (ENSMNEG00000042774) CNIH4 (ENSMNEG00000041190) ##8 WDR26 (ENSMNEG00000031309) CNIH3 (ENSMNEG00000035965) #8 ENSMNEG00000034880 ENSMNEG00000043544 #9 LBR (ENSMNEG00000008692) #11 ENAH (ENSMNEG00000033447) #13 SRP9 (ENSMNEG00000043512) #15 EPHX1 (ENSMNEG00000041552) #16 TMEM63A (ENSMNEG00000035779) #17 ENSMNEG00000035765 #20 PYCR2 (ENSMNEG00000033158) #19 ENSMNEG00000042256 #20 SDE2 (ENSMNEG00000038615) #21 ENSMNEG00000029530 #22 ACBD3 (ENSMNEG00000039320) #23 ENSMNEG00000041334 MIXL1 (ENSMNEG00000041606) #24 LIN9 (ENSMNEG00000038790) #25 PARP1 (ENSMNEG00000034074) #26 STUM (ENSMNEG00000036609) #27 ITPKB (ENSMNEG00000032813) #28 PSEN2 (ENSMNEG00000035904) #29 COQ8A (ENSMNEG00000037185) #30 CDC42BPA (ENSMNEG00000034215) #31 ENSMNEG00000033665 ZNF678 (ENSMNEG00000027914) JMJD4 (ENSMNEG00000044011) SNAP47 (ENSMNEG00000043435) ENSMNEG00000029686 Rhinopithecus ANCESTRAL SPECIES ENSGT01100000263504.a.b.a.a #22 Black snub-nosed monkey MODERN SPECIES 1685 ENSRBIG00000039333 TENM3 (ENSRBIG00000037111) DCTD (ENSRBIG00000044833) WWC2 (ENSRBIG00000040787) CDKN2AIP (ENSRBIG00000037956) ENSRBIG00000042448 ING2 (ENSRBIG00000010666) ENSRBIG00000005434 #22 RWDD4 (ENSRBIG00000036803) TRAPPC11 (ENSRBIG00000033668) STOX2 (ENSRBIG00000027490) ENPP6 (ENSRBIG00000025238) IRF2 (ENSRBIG00000039482) Golden snub-nosed monkey DUPLICATION Golden snub-nosed monkey MODERN SPECIES 3244 ILRUN (ENSRROG00000039638) SPDEF (ENSRROG00000030067) PACSIN1 (ENSRROG00000044346) ENSRROG00000011959 #22 ENSRROG00000030593 NUDT3 (ENSRROG00000019323) ENSRROG00000014514 ENSRROG00000027348 SMIM29 (ENSRROG00000030413) ENSRROG00000022352 GRM4 (ENSRROG00000035463) Golden snub-nosed monkey MODERN SPECIES 2065 SPRR2A (ENSRROG00000006815) ENSRROG00000026292 ENSRROG00000012379 ENSRROG00000001750 #22 SPRR2G (ENSRROG00000003366) Platyrrhini ANCESTRAL SPECIES ENSGT01100000263504.a.b.a.a #22 Cebidae ANCESTRAL SPECIES ENSGT01100000263504.a.b.a.a #22 Marmoset MODERN SPECIES 1 ENSCJAG00000074511 POLE2 (ENSCJAG00000017431) DNAAF2 (ENSCJAG00000047844) MGAT2 (ENSCJAG00000017412) ENSCJAG00000079121 LRR1 (ENSCJAG00000017394) ENSCJAG00000022603 ENSCJAG00000087039 ENSCJAG00000078416 ENSCJAG00000051936 ##7 ENSCJAG00000080762 MDGA2 (ENSCJAG00000017353) ENSCJAG00000072188 RPL10L (ENSCJAG00000076382) ENSCJAG00000074579 ENSCJAG00000077837 #22 ENSCJAG00000079332 MIS18BP1 (ENSCJAG00000015929) FANCM (ENSCJAG00000015945) FKBP3 (ENSCJAG00000015972) PRPF39 (ENSCJAG00000015991) TOGARAM1 (ENSCJAG00000016027) KLHL28 (ENSCJAG00000016063) C14orf28 (ENSCJAG00000016071) ENSCJAG00000074434 ENSCJAG00000062743 ENSCJAG00000078869 LRFN5 (ENSCJAG00000016083) ENSCJAG00000080619 ENSCJAG00000081847 ENSCJAG00000087323 Cebidae_a ANCESTRAL SPECIES 17 ENSGT00390000003595 ENSGT00920000149199 ENSGT01090000260051.a ENSGT00390000011856 ENSGT00940000153578.A ENSGT00940000153335.a.a ENSGT00390000017589 ENSGT00940000157287 ENSGT00720000108861 ENSGT00900000141125 ENSGT00940000161851 ENSGT00940000154334.l ENSGT00530000063718.a.a ENSGT00730000110939.b ENSGT00940000159360 ENSGT01100000263504.a.b.a.a #22 ENSGT01100000263504.a.b.b.a.b.c ##35 ENSGT00950000183187.B ENSGT01100000263555.b ENSGT00390000007870 ENSGT00940000157800 ENSGT00520000062027 ENSGT00930000151032.B ENSGT00950000182906.a.a.b ENSGT00390000004214 ENSGT00940000158256 ENSGT00390000016550 ENSGT00940000155738 ENSGT00940000164172 ENSGT00550000074902 ENSGT00940000153432.A.a Capuchin MODERN SPECIES 93 ZACN (ENSCCAG00000019446) GALR2 (ENSCCAG00000024587) SRP68 (ENSCCAG00000025246) EVPL (ENSCCAG00000036868) CDK3 (ENSCCAG00000020947) TEN1 (ENSCCAG00000023058) ACOX1 (ENSCCAG00000030633) FBF1 (ENSCCAG00000001052) MRPL38 (ENSCCAG00000033197) TRIM65 (ENSCCAG00000028682) TRIM47 (ENSCCAG00000023282) ENSCCAG00000020665 WBP2 (ENSCCAG00000030687) UNC13D (ENSCCAG00000030815) UNK (ENSCCAG00000031100) ENSCCAG00000032331 #22 ITGB4 (ENSCCAG00000020437) GALK1 (ENSCCAG00000032984) SAP30BP (ENSCCAG00000022487) SMIM5 (ENSCCAG00000021103) RECQL5 (ENSCCAG00000031546) ENSCCAG00000033438 LLGL2 (ENSCCAG00000023729) TSEN54 (ENSCCAG00000036624) CASKIN2 (ENSCCAG00000027765) TMEM94 (ENSCCAG00000033322) GRB2 (ENSCCAG00000031864) SLC25A19 (ENSCCAG00000020105) ENSCCAG00000025391 GGA3 (ENSCCAG00000027478) NUP85 (ENSCCAG00000030795) Euarchontoglires_A ANCESTRAL SPECIES ENSGT00570000079239 ENSGT00950000182834.B ##8 ENSGT00940000153634.b ENSGT00950000182834.A.a.b.c #8 ENSGT00390000000412 ENSGT00940000160505 #9 ENSGT00390000000417.a.a.b.a.b #11 ENSGT00940000157376 #13 ENSGT00390000018505.b #15 ENSGT00390000002210.d #16 ENSGT00940000159576 #17 ENSGT00950000183044.a.a.a.c #19 ENSGT00390000010056 #20 ENSGT00530000063402.b #21 ENSGT01100000263504.a.b.b.a.b.c ##35 ENSGT01100000263504.a.b.a.a #22 ENSGT00530000063651.a #23 ENSGT00940000162190 #24 ENSGT00390000003188 #25 ENSGT00940000156058 #26 ENSGT00390000008003 #27 ENSGT00940000156764.a #28 ENSGT00940000157923 #29 ENSGT00940000156810 #30 ENSGT01030000234517.H.b #31 ENSGT00390000018900 #32 ENSGT00940000163104 #33 ENSGT00390000004799 #34 ENSGT00390000005861 ENSGT00940000171704 ENSGT00950000183142.a.b.a.b #36 Glires ANCESTRAL SPECIES ENSGT00570000079239 ENSGT00950000182834.B ##8 ENSGT00940000153634.b ENSGT00950000182834.A.a.b.c #8 ENSGT00390000000412 ENSGT00940000160505 #9 ENSGT00390000000417.a.a.b.a.b #11 ENSGT00940000157376 #13 ENSGT00390000018505.b #15 ENSGT00390000002210.d #16 ENSGT00940000159576 #17 ENSGT00950000183044.a.a.a.c #19 ENSGT00390000010056 #20 ENSGT00530000063402.b #21 ENSGT01100000263504.a.b.b.a.b.c ##35 ENSGT01100000263504.a.b.a.a #22 ENSGT00530000063651.a #23 ENSGT00940000162190 #24 ENSGT00390000003188 #25 ENSGT00940000156058 #26 ENSGT00390000008003 #27 ENSGT00940000156764.a #28 ENSGT00940000157923 #29 ENSGT00940000156810 #30 ENSGT01030000234517.H.b #31 ENSGT00390000018900 #32 ENSGT00940000163104 #33 ENSGT00390000004799 #34 ENSGT00390000005861 ENSGT00940000171704 ENSGT00950000183142.a.b.a.b #36 Rodentia ANCESTRAL SPECIES ENSGT00570000079239 ENSGT00950000182834.B ##8 ENSGT00940000153634.b ENSGT00950000182834.A.a.b.c #8 ENSGT00390000000412 ENSGT00940000160505 #9 ENSGT00390000000417.a.a.b.a.b #11 ENSGT00940000157376 #13 ENSGT00390000018505.b #15 ENSGT00390000002210.d #16 ENSGT00940000159576 #17 ENSGT00950000183044.a.a.a.c #19 ENSGT00390000010056 #20 ENSGT00530000063402.b #21 ENSGT01100000263504.a.b.b.a.b.c.b ##35 ENSGT01100000263504.a.b.a.a #22 ENSGT00530000063651.a #23 ENSGT00940000162190 #24 ENSGT00390000003188 #25 ENSGT00940000156058 #26 ENSGT00390000008003 #27 ENSGT00940000156764.a #28 ENSGT00940000157923 #29 ENSGT00940000156810 #30 ENSGT01030000234517.H.b #31 ENSGT00390000018900 #32 ENSGT00940000163104 #33 ENSGT00390000004799 #34 ENSGT00390000005861 ENSGT00940000171704 ENSGT00950000183142.a.b.a.b #36 Rodentia_A ANCESTRAL SPECIES ENSGT01100000263504.a.b.a.a #22 Hystricomorpha ANCESTRAL SPECIES 29 ENSGT00950000183044.a.a.a.c.f #19 ENSGT00390000010056 #20 ENSGT00530000063402.b #21 ENSGT01100000263504.a.b.a.a #22 ENSGT00530000063651.a #23 ENSGT00940000162190 #24 ENSGT00390000003188 #25 ENSGT00940000156058 #26 ENSGT00390000008003 #27 ENSGT00940000156764.a #28 ENSGT00390000002089.a.b ENSGT00940000160954 ENSGT00940000154196.b ENSGT00940000155793 ENSGT00530000063629.a ENSGT00530000063876.a ENSGT00940000159420.b ENSGT00390000000709 ENSGT00940000157451 Hystricomorpha_a ANCESTRAL SPECIES 13 ENSGT00950000183044.a.a.a.c.f #19 ENSGT00390000010056 #20 ENSGT00530000063402.b #21 ENSGT01100000263504.a.b.a.a #22 ENSGT00530000063651.a #23 ENSGT00940000162190 #24 ENSGT00390000003188 #25 ENSGT00940000156058 #26 ENSGT00390000008003 #27 ENSGT00940000156764.a #28 ENSGT00390000002089.a.b ENSGT00940000160954 ENSGT00940000154196.b ENSGT00940000155793 ENSGT00530000063629.a ENSGT00530000063876.a ENSGT00940000159420.b ENSGT00390000000709 ENSGT00940000157451 Hystricomorpha_b ANCESTRAL SPECIES 4 ENSGT00950000183044.a.a.a.c.f #19 ENSGT00390000010056 #20 ENSGT00530000063402.b #21 ENSGT01100000263504.a.b.a.a #22 ENSGT00530000063651.a #23 ENSGT00940000162190 #24 ENSGT00390000003188 #25 ENSGT00940000156058 #26 ENSGT00390000008003 #27 ENSGT00940000156764.a #28 ENSGT00390000002089.a.b ENSGT00940000160954 ENSGT00940000154196.b ENSGT00940000155793 ENSGT00530000063629.a ENSGT00530000063876.a ENSGT00940000159420.b ENSGT00390000000709 ENSGT00940000157451 Long-tailed chinchilla MODERN SPECIES 196 PYCR2 (ENSCLAG00000002964) #19 ENSCLAG00000003115 #20 SDE2 (ENSCLAG00000003280) #21 ENSCLAG00000003662 #22 ACBD3 (ENSCLAG00000004643) #23 ENSCLAG00000005251 #24 LIN9 (ENSCLAG00000005536) #25 PARP1 (ENSCLAG00000006637) #26 STUM (ENSCLAG00000003663) #27 ITPKB (ENSCLAG00000004247) #28 ENSCLAG00000004308 TRAF5 (ENSCLAG00000005710) RCOR3 (ENSCLAG00000002506) KCNH1 (ENSCLAG00000003074) ENSCLAG00000003578 HHAT (ENSCLAG00000003158) ENSCLAG00000003749 SERTAD4 (ENSCLAG00000003962) SYT14 (ENSCLAG00000002869) Guinea pig MODERN SPECIES 137 PYCR2 (ENSCPOG00000005663) #19 ENSCPOG00000014755 #20 SDE2 (ENSCPOG00000014756) #21 ENSCPOG00000025231 ENSCPOG00000039202 #22 ACBD3 (ENSCPOG00000007184) #23 LIN9 (ENSCPOG00000015642) #25 PARP1 (ENSCPOG00000015643) #26 STUM (ENSCPOG00000031019) #27 ITPKB (ENSCPOG00000013483) #28 RD3 (ENSCPOG00000022572) PPP1R3C (ENSCPOG00000038237) HECTD2 (ENSCPOG00000008922) PCGF5 (ENSCPOG00000013156) ANKRD1 (ENSCPOG00000002565) RPP30 (ENSCPOG00000033174) HTR7 (ENSCPOG00000007482) Rodentia_B ANCESTRAL SPECIES ENSGT01100000263504.a.b.a.a #22 Myomorpha ANCESTRAL SPECIES ENSGT01100000263504.a.b.a.a #22 Muroidea ANCESTRAL SPECIES ENSGT01100000263504.a.b.a.a #22 Muroidea_A ANCESTRAL SPECIES 12 ENSGT00390000000417.a.a.b.a.b #11 ENSGT00940000160505 #9 ENSGT01000000214622.a.a.a ENSGT00950000182834.A.a.b.c #8 ENSGT00940000153634.b ENSGT00950000182834.B ##8 ENSGT00570000079239 ENSGT00390000013448.a.a.j.b ENSGT00390000013448.a.a.j.a ENSGT00390000002210.d #16 ENSGT00940000159576 #17 ENSGT00390000010056.z #20 ENSGT00950000183044.a.a.a.c #19 ENSGT00390000010056.y #20 ENSGT00530000063402.b #21 ENSGT01100000263504.a.b.a.a #22 ENSGT00530000063651.a #23 ENSGT00940000162190 #24 ENSGT00390000003188 #25 ENSGT00940000156058 #26 ENSGT00390000008003 #27 ENSGT00940000156764.a #28 ENSGT00940000157923 #29 ENSGT00940000156810 #30 ENSGT01030000234517.H.b #31 ENSGT00390000018900 #32 ENSGT00940000163104 #33 ENSGT00390000004799 #34 ENSGT00390000005861 ENSGT00950000183142.a.b.a.b #36 ENSGT00940000156766 #37 Murinae ANCESTRAL SPECIES 6 ENSGT00390000003595 ENSGT01090000260051.a ENSGT00390000011856 ENSGT00940000153578.A ENSGT00940000153335.a.a ENSGT00390000017589 ENSGT00940000157287 ENSGT00720000108861 ENSGT00900000141125 ENSGT00940000161851 ENSGT00940000154334.l ENSGT00530000063718.a.a ENSGT00730000110939.b ENSGT00940000159360 ENSGT01100000263504.a.a.yb ##35 ENSGT01100000263504.a.b.a.a #22 ENSGT00950000183187.B ENSGT01100000263555.b ENSGT00390000007870 ENSGT00940000167442 ENSGT00520000062027 ENSGT00940000157800 ENSGT00930000151032.B ENSGT00950000182906.a.a.b ENSGT00390000004214 ENSGT00940000158256 ENSGT00390000016550 ENSGT00940000155738 ENSGT00550000074902 ENSGT00940000153432.A.a ENSGT00390000014620 Mus ANCESTRAL SPECIES 2 ENSGT00390000003595 ENSGT01090000260051.a ENSGT00390000011856 ENSGT00940000153578.A ENSGT00940000153335.a.a ENSGT00390000017589 ENSGT00940000157287 ENSGT00720000108861 ENSGT00900000141125 ENSGT00940000161851 ENSGT00940000154334.l ENSGT00530000063718.a.a ENSGT00730000110939.b ENSGT00940000159360 ENSGT01100000263504.a.a.yb ##35 ENSGT01100000263504.a.b.a.a #22 ENSGT00950000183187.B ENSGT01100000263555.b ENSGT00390000007870 ENSGT00940000167442 ENSGT00520000062027 ENSGT00940000157800 ENSGT00930000151032.B ENSGT00950000182906.a.a.b ENSGT00390000004214 ENSGT00940000158256 ENSGT00390000016550 ENSGT00940000155738 ENSGT00550000074902 ENSGT00940000153432.A.a ENSGT00390000014620 Mus_A ANCESTRAL SPECIES 2 ENSGT00390000003595 ENSGT01090000260051.a ENSGT00390000011856 ENSGT00940000153578.A ENSGT00940000153335.a.a ENSGT00390000017589 ENSGT00940000157287 ENSGT00720000108861 ENSGT00900000141125 ENSGT00940000161851 ENSGT00940000154334.l ENSGT00530000063718.a.a ENSGT00730000110939.b ENSGT00940000159360 ENSGT01100000263504.a.a.yb ##35 ENSGT01100000263504.a.b.a.a #22 ENSGT00950000183187.B ENSGT01100000263555.b ENSGT00390000007870.d ENSGT00940000167442 ENSGT00520000062027 ENSGT00940000157800 ENSGT00930000151032.B ENSGT00950000182906.a.a.b ENSGT00390000004214 ENSGT00940000158256 ENSGT00390000016550 ENSGT00940000155738 ENSGT00550000074902 ENSGT00940000153432.A.a ENSGT00390000014620 Mus_B ANCESTRAL SPECIES 2 ENSGT00940000156895 ENSGT00390000003595 ENSGT01090000260051.a ENSGT00390000011856 ENSGT00940000153578.A ENSGT00940000153335.a.a ENSGT00390000017589 ENSGT00940000157287 ENSGT00720000108861 ENSGT00900000141125 ENSGT00940000161851 ENSGT00940000154334.l ENSGT00530000063718.a.a ENSGT00730000110939.b ENSGT00940000159360 ENSGT01100000263504.a.b.a.a #22 ENSGT00950000183187.B ENSGT01100000263555.b ENSGT00390000007870.d ENSGT00940000157800 ENSGT00930000151032.B ENSGT00950000182906.a.a.b ENSGT00390000004214 ENSGT00940000158256 ENSGT00390000016550 ENSGT00940000155738 ENSGT00550000074902 ENSGT00940000153432.A.a ENSGT00390000014620 ENSGT00940000157333 ENSGT00390000000204 Mouse MODERN SPECIES 2 Foxj1 (ENSMUSG00000034227) Exoc7 (ENSMUSG00000020792) Galr2 (ENSMUSG00000020793) Srp68 (ENSMUSG00000020780) Evpl (ENSMUSG00000034282) Cdk3 (ENSMUSG00000092300) Ten1 (ENSMUSG00000020778) Acox1 (ENSMUSG00000020777) Fbf1 (ENSMUSG00000020776) Mrpl38 (ENSMUSG00000020775) Trim65 (ENSMUSG00000054517) Trim47 (ENSMUSG00000020773) Wbp2 (ENSMUSG00000034341) Unc13d (ENSMUSG00000057948) Unk (ENSMUSG00000020770) H3f3b (ENSMUSG00000016559) #22 Galk1 (ENSMUSG00000020766) Itgb4 (ENSMUSG00000020758) Sap30bp (ENSMUSG00000020755) Smim6 (ENSMUSG00000075420) Smim5 (ENSMUSG00000048442) Recql5 (ENSMUSG00000020752) Myo15b (ENSMUSG00000034427) Llgl2 (ENSMUSG00000020782) Tsen54 (ENSMUSG00000020781) Caskin2 (ENSMUSG00000034471) Tmem94 (ENSMUSG00000020747) Grb2 (ENSMUSG00000059923) Slc25a19 (ENSMUSG00000020744) Mif4gd (ENSMUSG00000020743) Mrps7 (ENSMUSG00000046756) Mus_C ANCESTRAL SPECIES ENSGT01100000263504.a.b.a.a #22 Steppe mouse DUPLICATION Steppe mouse MODERN SPECIES 786 ENSMSIG00000002992 #22 Steppe mouse MODERN SPECIES 3135 Foxj1 (ENSMSIG00000026989) Exoc7 (ENSMSIG00000027010) Galr2 (ENSMSIG00000027109) Srp68 (ENSMSIG00000027117) Evpl (ENSMSIG00000027167) Cdk3 (ENSMSIG00000027206) ENSMSIG00000027222 Acox1 (ENSMSIG00000027230) Fbf1 (ENSMSIG00000027269) Mrpl38 (ENSMSIG00000027300) Trim65 (ENSMSIG00000027313) Trim47 (ENSMSIG00000027335) ENSMSIG00000027353 Unc13d (ENSMSIG00000027383) Unk (ENSMSIG00000027523) ENSMSIG00000027556 #22 Galk1 (ENSMSIG00000027567) Itgb4 (ENSMSIG00000027588) Sap30bp (ENSMSIG00000028005) Recql5 (ENSMSIG00000028015) Smim6 (ENSMSIG00000028032) Smim5 (ENSMSIG00000028034) Myo15b (ENSMSIG00000028039) Llgl2 (ENSMSIG00000028102) Tsen54 (ENSMSIG00000028141) Caskin2 (ENSMSIG00000028161) Tmem94 (ENSMSIG00000028168) ENSMSIG00000028209 Grb2 (ENSMSIG00000028212) Slc25a19 (ENSMSIG00000028240) Mif4gd (ENSMSIG00000028258) Steppe mouse MODERN SPECIES 3378 Cep70 (ENSMSIG00000014801) Esyt3 (ENSMSIG00000014739) Mras (ENSMSIG00000014726) Nme9 (ENSMSIG00000014688) Armc8 (ENSMSIG00000014484) Dbr1 (ENSMSIG00000014459) ENSMSIG00000014449 A4gnt (ENSMSIG00000014441) Dzip1l (ENSMSIG00000014303) Cldn18 (ENSMSIG00000014263) Sox14 (ENSMSIG00000014246) Il20rb (ENSMSIG00000014194) Nck1 (ENSMSIG00000014165) ENSMSIG00000014151 Stag1 (ENSMSIG00000013975) ENSMSIG00000013943 #22 Pccb (ENSMSIG00000013876) Msl2 (ENSMSIG00000013825) Ppp2r3a (ENSMSIG00000013723) ENSMSIG00000013691 ENSMSIG00000013676 Ephb1 (ENSMSIG00000013528) Ky (ENSMSIG00000013470) Cep63 (ENSMSIG00000013321) Anapc13 (ENSMSIG00000013301) Amotl2 (ENSMSIG00000013215) ENSMSIG00000013199 ENSMSIG00000013136 Slco2a1 (ENSMSIG00000013080) Rab6b (ENSMSIG00000013061) Srprb (ENSMSIG00000013033) Cricetidae ANCESTRAL SPECIES 13 ENSGT00390000000417.a.a.b.a.b #11 ENSGT00940000160505 #9 ENSGT01000000214622.a.a.a ENSGT00950000182834.A.a.b.c #8 ENSGT00940000153634.b ENSGT00950000182834.B ##8 ENSGT00570000079239 ENSGT00390000013448.a.a.j.b ENSGT00390000013448.a.a.j.a ENSGT00390000002210.d #16 ENSGT00940000159576 #17 ENSGT00390000010056.z #20 ENSGT00950000183044.a.a.a.c #19 ENSGT00390000010056.y #20 ENSGT00530000063402.b #21 ENSGT01100000263504.a.b.a.a #22 ENSGT00530000063651.a #23 ENSGT00940000162190 #24 ENSGT00390000003188 #25 ENSGT00940000156058 #26 ENSGT00390000008003 #27 ENSGT00940000156764.a #28 ENSGT00940000157923 #29 ENSGT00940000156810 #30 ENSGT01030000234517.H.b #31 ENSGT00390000018900 #32 ENSGT00940000163104 #33 ENSGT00390000004799 #34 ENSGT00390000005861 ENSGT00950000183142.a.b.a.b #36 ENSGT00940000156766 #37 Cricetinae ANCESTRAL SPECIES 4 ENSGT00390000000417.a.a.b.a.b #11 ENSGT00940000160505 #9 ENSGT01000000214622.a.a.a ENSGT00950000182834.A.a.b.c #8 ENSGT00940000153634.b ENSGT00950000182834.B ##8 ENSGT00570000079239 ENSGT00390000013448.a.a.j.b ENSGT00390000013448.a.a.j.a ENSGT00390000002210.d #16 ENSGT00940000159576 #17 ENSGT00390000010056.z #20 ENSGT00950000183044.a.a.a.c #19 ENSGT00390000010056.y #20 ENSGT00530000063402.b #21 ENSGT01100000263504.a.b.a.a #22 ENSGT00530000063651.a #23 ENSGT00940000162190 #24 ENSGT00390000003188 #25 ENSGT00940000156058 #26 ENSGT00390000008003 #27 ENSGT00940000156764.a #28 ENSGT00940000157923 #29 ENSGT00940000156810 #30 ENSGT01030000234517.H.b #31 ENSGT00390000018900 #32 ENSGT00940000163104 #33 ENSGT00390000004799 #34 ENSGT00390000005861 ENSGT00950000183142.a.b.a.b #36 ENSGT00940000156766 #37 Golden Hamster DUPLICATION Golden Hamster MODERN SPECIES 697 Srp9 (ENSMAUG00000017552) #15 Enah (ENSMAUG00000017836) #13 Lbr (ENSMAUG00000012993) #11 ENSMAUG00000014176 #9 Ccdc121rt1 (ENSMAUG00000010926) Cnih3 (ENSMAUG00000012379) #8 Wdr26 (ENSMAUG00000014280) Cnih4 (ENSMAUG00000012691) ##8 Nvl (ENSMAUG00000015157) ENSMAUG00000003804 ENSMAUG00000007599 Lefty1 (ENSMAUG00000009066) #20 Pycr2 (ENSMAUG00000017705) #19 Lefty2 (ENSMAUG00000018742) #20 Sde2 (ENSMAUG00000019326) #21 ENSMAUG00000019811 #22 Acbd3 (ENSMAUG00000008514) #23 Mixl1 (ENSMAUG00000000244) #24 Lin9 (ENSMAUG00000000458) #25 Parp1 (ENSMAUG00000008306) #26 Stum (ENSMAUG00000010054) #27 Itpkb (ENSMAUG00000013424) #28 Psen2 (ENSMAUG00000014629) #29 Coq8a (ENSMAUG00000016955) #30 Cdc42bpa (ENSMAUG00000010864) #31 ENSMAUG00000018123 Ahctf1 (ENSMAUG00000007505) #32 Kif28 (ENSMAUG00000011576) #33 Sccpdh (ENSMAUG00000014050) #34 Cnst (ENSMAUG00000014643) Tfb2m (ENSMAUG00000015170) #36 Golden Hamster MODERN SPECIES 637 Foxj1 (ENSMAUG00000009773) Exoc7 (ENSMAUG00000012327) Galr2 (ENSMAUG00000006970) Srp68 (ENSMAUG00000016401) Evpl (ENSMAUG00000009352) Cdk3 (ENSMAUG00000014303) Ten1 (ENSMAUG00000010159) Acox1 (ENSMAUG00000015640) Fbf1 (ENSMAUG00000017497) Mrpl38 (ENSMAUG00000008267) Trim65 (ENSMAUG00000020340) Trim47 (ENSMAUG00000017693) Wbp2 (ENSMAUG00000020790) ENSMAUG00000009510 Unk (ENSMAUG00000011025) H3f3b (ENSMAUG00000014699) #22 Galk1 (ENSMAUG00000015380) Itgb4 (ENSMAUG00000017795) Sap30bp (ENSMAUG00000021680) Recql5 (ENSMAUG00000017594) Smim6 (ENSMAUG00000012003) ENSMAUG00000017715 ENSMAUG00000014909 Llgl2 (ENSMAUG00000015309) Tsen54 (ENSMAUG00000016838) ENSMAUG00000015366 Tmem94 (ENSMAUG00000018154) Grb2 (ENSMAUG00000016953) ENSMAUG00000018531 Mif4gd (ENSMAUG00000021885) Mrps7 (ENSMAUG00000015115) Cricetidae_B ANCESTRAL SPECIES 8 ENSGT00390000000417.a.a.b.a.b #11 ENSGT00940000160505 #9 ENSGT01000000214622.a.a.a ENSGT00950000182834.A.a.b.c #8 ENSGT00940000153634.b ENSGT00950000182834.B ##8 ENSGT00570000079239 ENSGT00390000013448.a.a.j.b ENSGT00390000013448.a.a.j.a ENSGT00390000002210.d #16 ENSGT00940000159576 #17 ENSGT00390000010056.z #20 ENSGT00950000183044.a.a.a.c #19 ENSGT00390000010056.y #20 ENSGT00530000063402.b #21 ENSGT01100000263504.a.b.a.a #22 ENSGT00530000063651.a #23 ENSGT00940000162190 #24 ENSGT00390000003188 #25 ENSGT00940000156058 #26 ENSGT00390000008003 #27 ENSGT00940000156764.a #28 ENSGT00940000157923 #29 ENSGT00940000156810 #30 ENSGT01030000234517.H.b #31 ENSGT00390000018900 #32 ENSGT00940000163104 #33 ENSGT00390000004799 #34 ENSGT00390000005861 ENSGT00950000183142.a.b.a.b #36 ENSGT00940000156766 #37 Prairie vole MODERN SPECIES 14 ENSMOCG00000004862 Enah (ENSMOCG00000016095) #13 ENSMOCG00000009557 ENSMOCG00000011930 #9 Cnih3 (ENSMOCG00000011071) #8 Wdr26 (ENSMOCG00000018920) Cnih4 (ENSMOCG00000014531) ##8 Nvl (ENSMOCG00000017466) 9130409I23Rik (ENSMOCG00000021672) ENSMOCG00000002922 #16 Tmem63a (ENSMOCG00000010850) #17 Lefty1 (ENSMOCG00000013803) #20 Pycr2 (ENSMOCG00000000522) #19 Lefty2 (ENSMOCG00000020511) #20 Sde2 (ENSMOCG00000003863) #21 ENSMOCG00000017501 #22 Acbd3 (ENSMOCG00000021409) #23 Mixl1 (ENSMOCG00000022650) #24 Lin9 (ENSMOCG00000021496) #25 Parp1 (ENSMOCG00000014315) #26 Stum (ENSMOCG00000020677) #27 Itpkb (ENSMOCG00000002630) #28 Psen2 (ENSMOCG00000021854) #29 Coq8a (ENSMOCG00000022622) #30 Cdc42bpa (ENSMOCG00000019771) #31 Ahctf1 (ENSMOCG00000004774) #32 Kif28 (ENSMOCG00000022053) #33 Sccpdh (ENSMOCG00000017380) #34 Cnst (ENSMOCG00000006613) Tfb2m (ENSMOCG00000016864) #36 Smyd3 (ENSMOCG00000019317) #37 Northern American deer mouse MODERN SPECIES 12 Alg10b (ENSPEMG00000025886) Cpne8 (ENSPEMG00000021609) Kif21a (ENSPEMG00000023536) Abcd2 (ENSPEMG00000023925) CN725425 (ENSPEMG00000023448) Slc2a13 (ENSPEMG00000000329) Lrrk2 (ENSPEMG00000008690) Cntn1 (ENSPEMG00000001410) ENSPEMG00000030528 Pdzrn4 (ENSPEMG00000005226) Gxylt1 (ENSPEMG00000025095) Yaf2 (ENSPEMG00000000787) Zcrb1 (ENSPEMG00000005293) ENSPEMG00000030409 Prickle1 (ENSPEMG00000013383) ENSPEMG00000025295 #22 Adamts20 (ENSPEMG00000017664) Pus7l (ENSPEMG00000016583) Irak4 (ENSPEMG00000018737) Twf1 (ENSPEMG00000000838) Tmem117 (ENSPEMG00000006395) ENSPEMG00000024666 Nell2 (ENSPEMG00000021060) Dbx2 (ENSPEMG00000021509) Ano6 (ENSPEMG00000022036) ENSPEMG00000030605 Arid2 (ENSPEMG00000014806) ENSPEMG00000030307 ENSPEMG00000027302 Slc38a2 (ENSPEMG00000016717) Slc38a4 (ENSPEMG00000012063) Atlantogenata ANCESTRAL SPECIES ENSGT01100000263504.a.b.a.a #22 Xenarthra ANCESTRAL SPECIES 4 ENSGT00940000161294 ENSGT00390000008825.b.b ENSGT00390000009925.b ENSGT00940000156895 ENSGT00390000003595 ENSGT00920000149199 ENSGT00390000011856 ENSGT00940000153578.A ENSGT00940000153335.a.a ENSGT00390000017589 ENSGT00940000157287 ENSGT00900000141125 ENSGT00940000161851 ENSGT00730000110939.b ENSGT00940000159360 ENSGT01100000263504.a.b.a.a #22 ENSGT00950000183187.B ENSGT01100000263555.b ENSGT00390000007870 ENSGT00940000157800.h ENSGT00930000151032.B ENSGT00950000182906.a.a.b ENSGT00390000004214 ENSGT00940000158256 ENSGT00390000016550 ENSGT00940000155738 ENSGT00550000074902 ENSGT00940000153432.A.a ENSGT00390000014620 ENSGT00940000157333 ENSGT00390000000204 Armadillo MODERN SPECIES 792 ENSDNOG00000038549 MRPL38 (ENSDNOG00000013796) ENSDNOG00000039907 UNC13D (ENSDNOG00000041427) UNK (ENSDNOG00000038145) ENSDNOG00000041897 #22 GALK1 (ENSDNOG00000025875) ITGB4 (ENSDNOG00000037024) SAP30BP (ENSDNOG00000032103) ENSDNOG00000012832 Marsupialia ANCESTRAL SPECIES 3 ENSGT00390000002970 ENSGT00390000013448.a.a ENSGT00570000079239 ENSGT00950000182834.B.i ##8 ENSGT00940000153634.b ENSGT00950000182834.A.a.b.c #8 ENSGT00940000165101 ENSGT00390000000417.a.a.b.a.b #11 ENSGT00940000157376 #13 ENSGT00390000018505 #15 ENSGT00390000002210.d #16 ENSGT00940000159576 #17 ENSGT00950000183044.a.a.a.c.a #19 ENSGT00390000010056 #20 ENSGT00530000063402.b #21 ENSGT01100000263504.a.b.a.a #22 ENSGT00530000063651.a #23 ENSGT00940000162190 #24 ENSGT00390000003188 #25 ENSGT00940000156058 #26 ENSGT00390000008003 #27 ENSGT00940000156764.a #28 ENSGT00940000157923 #29 ENSGT00940000156810 #30 ENSGT01030000234517.H.b #31 ENSGT00390000018900 #32 ENSGT00940000163104 #33 ENSGT00390000004799 #34 ENSGT00390000005861 ENSGT00950000183142.a.b.a.b #36 ENSGT00910000148060 Opossum MODERN SPECIES 1 WDR26 (ENSMODG00000005227) ENSMODG00000040191 CNIH3 (ENSMODG00000038171) #8 ENSMODG00000005248 ENSMODG00000005822 ENSMODG00000043253 ENSMODG00000005848 #11 ENAH (ENSMODG00000005856) #13 SRP9 (ENSMODG00000038570) #15 EPHX1 (ENSMODG00000005882) #16 TMEM63A (ENSMODG00000005934) #17 ENSMODG00000005956 #19 ENSMODG00000005964 #20 ENSMODG00000050067 SDE2 (ENSMODG00000005979) #21 H3F3B (ENSMODG00000045947) #22 ACBD3 (ENSMODG00000005990) #23 MIXL1 (ENSMODG00000005994) #24 LIN9 (ENSMODG00000006033) #25 PARP1 (ENSMODG00000006076) #26 STUM (ENSMODG00000027423) #27 ITPKB (ENSMODG00000006095) #28 PSEN2 (ENSMODG00000006114) #29 COQ8A (ENSMODG00000006151) #30 CDC42BPA (ENSMODG00000006246) #31 AHCTF1 (ENSMODG00000006310) #32 ENSMODG00000024676 #33 SCCPDH (ENSMODG00000006356) #34 CNST (ENSMODG00000006372) ENSMODG00000043627 ENSMODG00000038289 #36 Marsupialia_b ANCESTRAL SPECIES ENSGT01100000263504.a.b.a.a #22 Diprotodontia ANCESTRAL SPECIES ENSGT01100000263504.a.b.a.a #22 Diprotodontia_a ANCESTRAL SPECIES ENSGT01100000263504.a.b.a.a #22 Common wonbat MODERN SPECIES 1037 EXOC7 (ENSVURG00010010977) ZACN (ENSVURG00010011100) GALR2 (ENSVURG00010011113) SRP68 (ENSVURG00010011137) ENSVURG00010011174 CDK3 (ENSVURG00010011190) TEN1 (ENSVURG00010011211) ACOX1 (ENSVURG00010011218) FBF1 (ENSVURG00010011240) MRPL38 (ENSVURG00010011255) TRIM65 (ENSVURG00010011264) TRIM47 (ENSVURG00010011279) ENSVURG00010011299 UNC13D (ENSVURG00010011337) UNK (ENSVURG00010011426) ENSVURG00010011438 #22 GALK1 (ENSVURG00010011448) ITGB4 (ENSVURG00010011475) ENSVURG00010011557 RECQL5 (ENSVURG00010011571) SMIM5 (ENSVURG00010011608) ENSVURG00010011618 LLGL2 (ENSVURG00010011636) TSEN54 (ENSVURG00010011686) ENSVURG00010011710 TMEM94 (ENSVURG00010011727) GRB2 (ENSVURG00010011830) SLC25A19 (ENSVURG00010011865) MIF4GD (ENSVURG00010011874) MRPS7 (ENSVURG00010011908) GGA3 (ENSVURG00010011921) Wallaby MODERN SPECIES 3806 UNK (ENSMEUG00000004094) ENSMEUG00000004090 #22 Sauria ANCESTRAL SPECIES 34 ENSGT00940000161445 ENSGT00940000170834 ENSGT00390000014682 ENSGT00390000014139 ENSGT00940000161057 ENSGT00940000158344.b ENSGT00390000002548 ENSGT00390000005826.a.a ENSGT00940000158431.a.a.a.a.b.a ENSGT00940000160330 ENSGT00940000159112.b ENSGT00940000161901 ENSGT00940000159256 ENSGT00390000017267 ENSGT01090000260005.a.b.a.b.b ENSGT01100000263504.a.b.a.a #22 ENSGT00940000171204 ENSGT01100000263504.a.b.a.b.a.b ##35 ENSGT00940000161634 ENSGT00940000160281 ENSGT00940000160500 ENSGT00940000161895 ENSGT00530000063174.b ENSGT00940000153348.C ENSGT00950000183147.A.b.a ENSGT00940000161428 ENSGT00940000160457 ENSGT00390000015495 ENSGT00940000157823 ENSGT00940000178461 ENSGT00940000160232 Archelosauria ANCESTRAL SPECIES 33 ENSGT00940000161445 ENSGT00940000170834 ENSGT00390000014682 ENSGT00390000014139 ENSGT00940000161057 ENSGT00940000158344.b ENSGT00390000002548 ENSGT00390000005826.a.a ENSGT00940000158431.a.a.a.a.b.a ENSGT00940000160330 ENSGT00940000159112.b ENSGT00940000161901 ENSGT00940000159256 ENSGT00390000017267 ENSGT01090000260005.a.b.a.b.b ENSGT01100000263504.a.b.a.a #22 ENSGT00940000171204 ENSGT01100000263504.a.b.a.b.a.b ##35 ENSGT00940000161634 ENSGT00940000160281 ENSGT00940000160500 ENSGT00940000161895 ENSGT00530000063174.b ENSGT00940000153348.C ENSGT00940000161428 ENSGT00940000160457 ENSGT00390000015495 ENSGT00940000157823 ENSGT00940000178461 ENSGT00940000160232 ENSGT00940000157162 Cryptodira ANCESTRAL SPECIES 1 ENSGT00390000002970 ENSGT00390000013448.a.a ENSGT00570000079239 ENSGT00950000182834.B ##8 ENSGT00940000153634.b ENSGT00950000182834.A.a.b.c #8 ENSGT00390000000412 ENSGT00940000165101 ENSGT00390000000417.a.a.b.a.b #11 ENSGT00940000157376 #13 ENSGT00390000018505 #15 ENSGT00390000002210.d #16 ENSGT00940000159576 #17 ENSGT00390000010056 #20 ENSGT00530000063402.b #21 ENSGT01100000263504.a.b.a.a #22 ENSGT00530000063651.a #23 ENSGT00940000162190 #24 ENSGT00390000003188 #25 ENSGT00940000156058 #26 ENSGT00390000008003 #27 ENSGT00940000156764.a #28 ENSGT00940000157923 #29 ENSGT00940000156810 #30 ENSGT01030000234517.H.b #31 ENSGT00950000183114.a.a ENSGT00940000159274 ENSGT00940000160421 ENSGT00940000158182 ENSGT00940000160921 ENSGT00950000182836.a Chinese turtle MODERN SPECIES 686 ENSPSIG00000011407 LBR (ENSPSIG00000013788) #11 ENAH (ENSPSIG00000014372) #13 SRP9 (ENSPSIG00000014842) #15 EPHX1 (ENSPSIG00000015003) #16 TMEM63A (ENSPSIG00000015072) #17 ENSPSIG00000016169 #20 SDE2 (ENSPSIG00000016286) #21 ENSPSIG00000016288 ENSPSIG00000016297 #22 ACBD3 (ENSPSIG00000016300) #23 ENSPSIG00000016352 LIN9 (ENSPSIG00000016362) #25 PARP1 (ENSPSIG00000016374) #26 STUM (ENSPSIG00000017291) #27 ITPKB (ENSPSIG00000017341) #28 PSEN2 (ENSPSIG00000017347) #29 COQ8A (ENSPSIG00000017351) #30 CDC42BPA (ENSPSIG00000017372) #31 XDH (ENSPSIG00000007446) EHD3 (ENSPSIG00000017757) CAPN14 (ENSPSIG00000017963) GALNT14 (ENSPSIG00000005019) ENSPSIG00000000884 CAPN13 (ENSPSIG00000005500) Testudinoidea ANCESTRAL SPECIES ENSGT00390000002970 ENSGT00390000013448.a.a ENSGT00570000079239 ENSGT00950000182834.B ##8 ENSGT00940000153634.b ENSGT00950000182834.A.a.b.c #8 ENSGT00390000000412 ENSGT00940000165101 ENSGT00390000000417.a.a.b.a.b #11 ENSGT00940000157376 #13 ENSGT00390000018505 #15 ENSGT00390000002210.d #16 ENSGT00940000159576 #17 ENSGT00390000010056 #20 ENSGT00530000063402.b #21 ENSGT01100000263504.a.b.a.a #22 ENSGT00940000171204 ENSGT01100000263504.a.b.b.a.b ##35 ENSGT00530000063651.a #23 ENSGT00940000162190 #24 ENSGT00390000003188 #25 ENSGT00940000156058 #26 ENSGT00390000008003 #27 ENSGT00940000156764.a #28 ENSGT00940000157923 #29 ENSGT00940000156810 #30 ENSGT01030000234517.H.b #31 ENSGT00950000183114.a.a ENSGT00940000159274 ENSGT00950000186173 ENSGT00940000158182 Emydidae ANCESTRAL SPECIES 17 ENSGT00390000003595 ENSGT01090000260051.a ENSGT00390000011856 ENSGT00940000153578.A ENSGT00940000153335.a.a ENSGT00390000017589 ENSGT00940000157287 ENSGT00720000108861 ENSGT00900000141125 ENSGT00940000161851.a ENSGT00940000165001.a.b ENSGT00940000162951.b ENSGT00530000063718.a.a ENSGT00730000110939.b ENSGT00940000159360 ENSGT01100000263504.a.b.a.a #22 ENSGT00940000171204 ENSGT01100000263504.a.b.a.b.a.a ##35 ENSGT00940000167259 ENSGT00950000183187.B ENSGT01100000263555.b ENSGT00390000007870 ENSGT00940000157800 ENSGT00520000062027 ENSGT00930000151032.B ENSGT00950000182906.a.a.b ENSGT00390000004214 ENSGT00940000158256 ENSGT00390000016550 ENSGT00940000155738 ENSGT00550000074902 Three-toed box turtle MODERN SPECIES 90 FOXJ1 (ENSTMTG00000018047) EXOC7 (ENSTMTG00000017962) GALR2 (ENSTMTG00000017944) SRP68 (ENSTMTG00000017913) ENSTMTG00000017741 CDK3 (ENSTMTG00000017667) TEN1 (ENSTMTG00000017650) ACOX1 (ENSTMTG00000017609) FBF1 (ENSTMTG00000016544) MRPL38 (ENSTMTG00000016458) ENSTMTG00000016447 ENSTMTG00000016430 WBP2 (ENSTMTG00000016413) UNC13D (ENSTMTG00000016065) UNK (ENSTMTG00000015936) ENSTMTG00000015912 #22 ENSTMTG00000015895 GALK1 (ENSTMTG00000015883) ITGB4 (ENSTMTG00000015826) SAP30BP (ENSTMTG00000015791) SMIM5 (ENSTMTG00000015772) RECQL5 (ENSTMTG00000015741) ENSTMTG00000015710 ENSTMTG00000015653 LLGL2 (ENSTMTG00000015592) TSEN54 (ENSTMTG00000015553) ENSTMTG00000015541 ENSTMTG00000015533 TMEM94 (ENSTMTG00000015482) GRB2 (ENSTMTG00000015461) SLC25A19 (ENSTMTG00000015450) Testudinidae ANCESTRAL SPECIES 6 ENSGT00390000002970 ENSGT00390000013448.a.a ENSGT00570000079239 ENSGT00950000182834.B ##8 ENSGT00940000153634.b ENSGT00950000182834.A.a.b.c #8 ENSGT00390000000412 ENSGT00940000165101 ENSGT00390000000417.a.a.b.a.b #11 ENSGT00940000157376 #13 ENSGT00390000018505 #15 ENSGT00390000002210.d #16 ENSGT00940000159576 #17 ENSGT00390000010056 #20 ENSGT00530000063402.b #21 ENSGT01100000263504.a.b.a.a #22 ENSGT00530000063651.a #23 ENSGT00940000162190 #24 ENSGT00390000003188 #25 ENSGT00940000156058 #26 ENSGT00390000008003 #27 ENSGT00950000183107.a.b.a ENSGT00940000156764.a #28 ENSGT00940000157923 #29 ENSGT00940000156810 #30 ENSGT01030000234517.H.b #31 ENSGT00950000183114.a.a ENSGT00940000159274 ENSGT00950000186173 ENSGT00940000158182 ENSGT00940000160921 Abingdon island giant tortoise MODERN SPECIES 1080 ENSCABG00000010712 #22 ENSCABG00000010742 ENSCABG00000011536 Goode s thornscrub tortoise MODERN SPECIES 17 NVL (ENSGEVG00005015719) CNIH4 (ENSGEVG00005015701) ##8 WDR26 (ENSGEVG00005015598) CNIH3 (ENSGEVG00005015546) #8 ENSGEVG00005015495 ENSGEVG00005015462 ENSGEVG00005015408 ENSGEVG00005015386 LBR (ENSGEVG00005015360) #11 ENAH (ENSGEVG00005015322) #13 SRP9 (ENSGEVG00005015297) #15 EPHX1 (ENSGEVG00005015263) #16 TMEM63A (ENSGEVG00005015156) #17 ENSGEVG00005015097 #20 SDE2 (ENSGEVG00005015082) #21 ENSGEVG00005015026 #22 ACBD3 (ENSGEVG00005015002) #23 MIXL1 (ENSGEVG00005014953) #24 LIN9 (ENSGEVG00005014867) #25 PARP1 (ENSGEVG00005014820) #26 STUM (ENSGEVG00005014790) #27 ENSGEVG00005014678 ITPKB (ENSGEVG00005014643) #28 PSEN2 (ENSGEVG00005014558) #29 COQ8A (ENSGEVG00005014517) #30 CDC42BPA (ENSGEVG00005014464) #31 ENSGEVG00005014287 #31 XDH (ENSGEVG00005014160) EHD3 (ENSGEVG00005014115) ENSGEVG00005014063 GALNT14 (ENSGEVG00005013754) Archosauria ANCESTRAL SPECIES 12 ENSGT00940000153578.A ENSGT00940000153335.a.a ENSGT00390000017589 ENSGT00940000157287 ENSGT00720000108861 ENSGT00900000141125 ENSGT00940000161851 ENSGT00940000154334.l ENSGT00940000165001.a.b ENSGT00940000162951.b ENSGT00530000063718.a.a ENSGT00730000110939.b ENSGT00940000159360 ENSGT01100000263504.a.b.b.a.b ##35 ENSGT00940000167259 ENSGT01100000263504.a.b.a.a #22 ENSGT00950000183187.B ENSGT01100000263555.b ENSGT00390000007870 ENSGT00520000062027 ENSGT00940000157800 ENSGT00940000170136 ENSGT00930000151032.B ENSGT00950000182906.a.a.b ENSGT00390000004214 ENSGT00940000154272.B ENSGT00940000158256 ENSGT00390000016550 ENSGT00940000155738 ENSGT00550000074902 ENSGT00940000153432.A.a Australian saltwater crocodile MODERN SPECIES 47 RNF157 (ENSCPRG00005006773) EXOC7 (ENSCPRG00005006716) GALR2 (ENSCPRG00005006703) SRP68 (ENSCPRG00005006694) ENSCPRG00005006674 CDK3 (ENSCPRG00005006668) TEN1 (ENSCPRG00005006664) ACOX1 (ENSCPRG00005006650) FBF1 (ENSCPRG00005006629) MRPL38 (ENSCPRG00005006619) TRIM65 (ENSCPRG00005006618) ENSCPRG00005006609 WBP2 (ENSCPRG00005006603) UNC13D (ENSCPRG00005006519) UNK (ENSCPRG00005006464) ENSCPRG00005006428 #22 GALK1 (ENSCPRG00005006406) ITGB4 (ENSCPRG00005004809) SAP30BP (ENSCPRG00005004640) SMIM5 (ENSCPRG00005004637) RECQL5 (ENSCPRG00005004620) ENSCPRG00005004608 ENSCPRG00005004593 LLGL2 (ENSCPRG00005004571) TSEN54 (ENSCPRG00005004562) ENSCPRG00005004559 ENSCPRG00005004552 TMEM94 (ENSCPRG00005004119) GRB2 (ENSCPRG00005004058) SLC25A19 (ENSCPRG00005004003) MIF4GD (ENSCPRG00005003995) Aves ANCESTRAL SPECIES 17 ENSGT00940000153335.a.a ENSGT00390000017589 ENSGT00940000157287 ENSGT00720000108861 ENSGT00900000141125 ENSGT00940000161851 ENSGT00940000154334.l ENSGT00940000165001.a.b ENSGT00940000162951.b ENSGT00530000063718.a.a ENSGT00730000110939.b ENSGT00940000159360 ENSGT01100000263504.a.a ##35 ENSGT01100000263504.b ##35 ENSGT00940000171204 ENSGT01100000263504.a.b.a.a #22 ENSGT00950000183187.B ENSGT01100000263555.b ENSGT00390000007870 ENSGT00520000062027 ENSGT00940000157800 ENSGT00940000170136 ENSGT00930000151032.B ENSGT00950000182906.a.a.b ENSGT00390000004214 ENSGT00940000154272.B ENSGT00940000158256 ENSGT00390000016550 ENSGT00940000155738 ENSGT00550000074902 ENSGT00940000153432.A.a Neognathae ANCESTRAL SPECIES 17 ENSGT00390000003595 ENSGT01090000260051.a ENSGT00390000011856 ENSGT00940000153578.A ENSGT00940000153335.a.a ENSGT00390000017589 ENSGT00940000157287 ENSGT00720000108861 ENSGT00900000141125 ENSGT00940000161851 ENSGT00940000154334.l ENSGT00940000162951.b ENSGT00530000063718.a.a ENSGT00730000110939.b ENSGT00940000159360 ENSGT01100000263504.a.b.a.a #22 ENSGT00950000183187.B ENSGT01100000263555.b ENSGT00390000007870 ENSGT00520000062027 ENSGT00940000157800 ENSGT00940000170136 ENSGT00930000151032.B ENSGT00950000182906.a.a.b ENSGT00390000004214 ENSGT00940000154272.B ENSGT00940000158256 ENSGT00390000016550 ENSGT00940000155738 ENSGT00550000074902 ENSGT00940000153432.A.a Neognathae_b ANCESTRAL SPECIES 19 ENSGT01090000260051.a ENSGT00390000011856 ENSGT00940000153578.A ENSGT00940000153335.a.a ENSGT00390000017589 ENSGT00940000157287 ENSGT00720000108861 ENSGT00900000141125 ENSGT00940000161851 ENSGT00940000154334.l ENSGT00940000165001.a.b ENSGT00940000162951.b ENSGT00530000063718.a.a ENSGT00730000110939.b ENSGT00940000159360 ENSGT01100000263504.a.b.a.a #22 ENSGT00950000183187.B ENSGT01100000263555.b ENSGT00390000007870 ENSGT00520000062027 ENSGT00940000157800 ENSGT00940000170136 ENSGT00930000151032.B ENSGT00950000182906.a.a.b ENSGT00390000004214 ENSGT00940000154272.B ENSGT00940000158256 ENSGT00390000016550 ENSGT00940000155738 ENSGT00550000074902 ENSGT00940000153432.A.a Passeriformes ANCESTRAL SPECIES 17 ENSGT01090000260051.a ENSGT00390000011856 ENSGT00940000153578.A ENSGT01030000235299.a.a.b ENSGT00940000153335.a.a ENSGT00390000017589 ENSGT00940000157287 ENSGT00900000141125 ENSGT00940000161851 ENSGT00940000154334.l ENSGT00940000165001.a.b ENSGT00940000162951.b ENSGT00530000063718.a.a ENSGT00730000110939.b ENSGT00940000159360 ENSGT01100000263504.a.b.a.a #22 ENSGT00950000183187.B ENSGT01100000263555.b ENSGT00390000007870.g.a ENSGT00520000062027 ENSGT00940000157800 ENSGT00940000170136 ENSGT00930000151032.B ENSGT00950000182906.a.a.b ENSGT00390000004214 ENSGT00940000154272.B ENSGT00940000158025.b ENSGT00940000158256 ENSGT00390000016550 ENSGT00940000155738 ENSGT00550000074902 Great tit MODERN SPECIES 8 FOXJ1 (ENSPMJG00000008250) EXOC7 (ENSPMJG00000008234) GALR2 (ENSPMJG00000008232) SRP68 (ENSPMJG00000008231) ENSPMJG00000007825 ENSPMJG00000007823 CDK3 (ENSPMJG00000007702) TEN1 (ENSPMJG00000007701) ACOX1 (ENSPMJG00000007700) MRPL38 (ENSPMJG00000007699) ENSPMJG00000007698 ENSPMJG00000007697 WBP2 (ENSPMJG00000007690) UNC13D (ENSPMJG00000007670) UNK (ENSPMJG00000007542) ENSPMJG00000007537 #22 GALK1 (ENSPMJG00000007512) ITGB4 (ENSPMJG00000001319) ENSPMJG00000001253 SMIM5 (ENSPMJG00000001247) RECQL5 (ENSPMJG00000001223) ENSPMJG00000001212 ENSPMJG00000000845 LLGL2 (ENSPMJG00000000795) TSEN54 (ENSPMJG00000000766) MCHR1 (ENSPMJG00000000758) ENSPMJG00000000725 TMEM94 (ENSPMJG00000000598) GRB2 (ENSPMJG00000000573) SLC25A19 (ENSPMJG00000000566) MIF4GD (ENSPMJG00000000560) Passeriformes_d ANCESTRAL SPECIES 17 ENSGT00940000156895 ENSGT00390000003595 ENSGT01090000260051.a ENSGT00390000011856 ENSGT00940000153578.A ENSGT01030000235299.a.a.b ENSGT00940000153335.a.a ENSGT00390000017589 ENSGT00940000157287 ENSGT00900000141125 ENSGT00940000161851 ENSGT00940000154334.l ENSGT00530000063718.a.a ENSGT00730000110939.b ENSGT00940000159360 ENSGT01100000263504.a.b.a.a #22 ENSGT00950000183187.B ENSGT01100000263555.b ENSGT00390000007870.h ENSGT00520000062027 ENSGT00390000007870.g.a ENSGT00940000157800 ENSGT00940000170136 ENSGT00930000151032.B ENSGT00950000182906.a.a.b ENSGT00390000004214 ENSGT00940000154272.B ENSGT00940000158256 ENSGT00390000016550 ENSGT00940000155738 ENSGT00550000074902 Flycatcher MODERN SPECIES 8 FOXJ1 (ENSFALG00000000971) EXOC7 (ENSFALG00000000975) GALR2 (ENSFALG00000000980) SRP68 (ENSFALG00000000982) ENSFALG00000000987 ENSFALG00000025835 CDK3 (ENSFALG00000000992) ENSFALG00000024866 MRPL38 (ENSFALG00000001005) TRIM65 (ENSFALG00000028723) ENSFALG00000001020 WBP2 (ENSFALG00000026954) ENSFALG00000024919 UNC13D (ENSFALG00000001027) UNK (ENSFALG00000001035) ENSFALG00000001052 #22 GALK1 (ENSFALG00000001061) ITGB4 (ENSFALG00000001064) SAP30BP (ENSFALG00000027577) RECQL5 (ENSFALG00000001087) ENSFALG00000001093 ENSFALG00000024516 LLGL2 (ENSFALG00000001115) TSEN54 (ENSFALG00000001119) ENSFALG00000015106 CASKIN2 (ENSFALG00000001125) TMEM94 (ENSFALG00000001137) GRB2 (ENSFALG00000023197) SLC25A19 (ENSFALG00000023937) MIF4GD (ENSFALG00000025719) MRPS7 (ENSFALG00000001162) Passeriformes_g ANCESTRAL SPECIES 58 ENSGT00940000156765 ENSGT00940000160599 ENSGT00940000160358 ENSGT01030000234613.b.b ENSGT00940000159555 ENSGT00940000159610 ENSGT01030000234642.a.b.b.d.b.d ENSGT00390000014682 ENSGT00940000158344.b ENSGT00390000002548 ENSGT00390000005826.a.a ENSGT00940000159112.b ENSGT00940000159256 ENSGT00390000017267 ENSGT01090000260005.a.b.a.b.b ENSGT01100000263504.a.b.a.a #22 ENSGT00390000009409 ENSGT00940000159343 ENSGT00940000160378 Passeroidea ANCESTRAL SPECIES 19 ENSGT00940000156895 ENSGT00390000003595 ENSGT01090000260051.a ENSGT00390000011856 ENSGT00940000153578.A ENSGT01030000235299.a.a.b ENSGT00940000153335.a.a ENSGT00390000017589 ENSGT00940000157287 ENSGT00900000141125 ENSGT00940000161851 ENSGT00940000154334.l ENSGT00530000063718.a.a ENSGT00730000110939.b ENSGT00940000159360 ENSGT01100000263504.a.b.a.a #22 ENSGT00950000183187.B ENSGT01100000263555.b ENSGT00390000007870.h ENSGT00520000062027 ENSGT00390000007870.g.a ENSGT00940000157800 ENSGT00950000182906.a.a.b ENSGT00390000004214 ENSGT00940000154272.B ENSGT00940000158256 ENSGT00390000016550 ENSGT00940000155738 ENSGT00550000074902 ENSGT00940000153432.A.a ENSGT00390000014620 Zebra finch DUPLICATION Zebra finch MODERN SPECIES 90 ENSTGUG00000022886 ENSTGUG00000022867 ENSTGUG00000026946 ENSTGUG00000028622 ENSTGUG00000028656 ENSTGUG00000026943 ENSTGUG00000029586 ENSTGUG00000023185 ENSTGUG00000026521 ENSTGUG00000028463 ENSTGUG00000025277 ENSTGUG00000026509 EHD2 (ENSTGUG00000024660) NOP53 (ENSTGUG00000018833) ENSTGUG00000029304 ENSTGUG00000026183 #22 ENSTGUG00000023522 ENSTGUG00000022039 ENSTGUG00000029363 ENSTGUG00000024158 EIF3K (ENSTGUG00000021289) ENSTGUG00000029474 ENSTGUG00000026538 ENSTGUG00000020906 ENSTGUG00000021795 ##35 ENSTGUG00000027973 ENSTGUG00000021988 ENSTGUG00000021829 ENSTGUG00000019027 ENSTGUG00000022424 ENSTGUG00000019023 Zebra finch MODERN SPECIES 9 RNF157 (ENSTGUG00000007998) FOXJ1 (ENSTGUG00000025833) EXOC7 (ENSTGUG00000008021) GALR2 (ENSTGUG00000022268) SRP68 (ENSTGUG00000008083) ENSTGUG00000008114 ENSTGUG00000022535 CDK3 (ENSTGUG00000008139) ACOX1 (ENSTGUG00000008167) MRPL38 (ENSTGUG00000008223) ENSTGUG00000020525 ENSTGUG00000008241 WBP2 (ENSTGUG00000008249) UNC13D (ENSTGUG00000008268) UNK (ENSTGUG00000008279) H3F3B (ENSTGUG00000008312) #22 GALK1 (ENSTGUG00000008321) ITGB4 (ENSTGUG00000008343) ENSTGUG00000008426 RECQL5 (ENSTGUG00000008444) ENSTGUG00000008485 ENSTGUG00000008499 LLGL2 (ENSTGUG00000008523) TSEN54 (ENSTGUG00000008548) MCHR1 (ENSTGUG00000026892) CASKIN2 (ENSTGUG00000026779) TMEM94 (ENSTGUG00000008583) GRB2 (ENSTGUG00000008612) SLC25A19 (ENSTGUG00000018437) GGA3 (ENSTGUG00000008660) MRPS7 (ENSTGUG00000008655) Neognathae_c ANCESTRAL SPECIES 23 ENSGT00940000156895 ENSGT00390000003595 ENSGT01090000260051.a ENSGT00390000011856 ENSGT00940000153578.A ENSGT00940000153335.a.a ENSGT00390000017589 ENSGT00940000157287 ENSGT00720000108861 ENSGT00900000141125 ENSGT00940000161851 ENSGT00940000162951.b ENSGT00530000063718.a.a ENSGT00730000110939.b ENSGT00940000159360 ENSGT01100000263504.a.b.a.a #22 ENSGT00950000183187.B ENSGT01100000263555.b ENSGT00390000007870 ENSGT00940000157800 ENSGT00940000170136 ENSGT00930000151032.B ENSGT00950000182906.a.a.b ENSGT00390000004214 ENSGT00940000158256 ENSGT00390000016550 ENSGT00940000155738 ENSGT00550000074902 ENSGT00940000153432.A.a ENSGT00390000014620 ENSGT00940000157333 Golden eagle DUPLICATION Golden eagle MODERN SPECIES 4 CAPN2 (ENSACCG00020013713) TP53BP2 (ENSACCG00020013658) FBXO28 (ENSACCG00020013552) DEGS1 (ENSACCG00020013532) NVL (ENSACCG00020013513) CNIH4 (ENSACCG00020013489) ##8 WDR26 (ENSACCG00020013450) CNIH3 (ENSACCG00020013406) #8 LBR (ENSACCG00020013359) #11 ENAH (ENSACCG00020013315) #13 SRP9 (ENSACCG00020013255) #15 EPHX1 (ENSACCG00020013246) #16 TMEM63A (ENSACCG00020013208) #17 ENSACCG00020013138 #20 SDE2 (ENSACCG00020013122) #21 ENSACCG00020013104 #22 ACBD3 (ENSACCG00020013090) #23 ENSACCG00020013075 LIN9 (ENSACCG00020013062) #25 PARP1 (ENSACCG00020013013) #26 STUM (ENSACCG00020012947) #27 ITPKB (ENSACCG00020012928) #28 ENSACCG00020012909 PSEN2 (ENSACCG00020012879) #29 COQ8A (ENSACCG00020012847) #30 CDC42BPA (ENSACCG00020012470) #31 XDH (ENSACCG00020012219) ENSACCG00020012159 EHD3 (ENSACCG00020012137) GALNT14 (ENSACCG00020012100) ENSACCG00020012005 Golden eagle MODERN SPECIES 21 FOXJ1 (ENSACCG00020008912) EXOC7 (ENSACCG00020009061) GALR2 (ENSACCG00020009130) SRP68 (ENSACCG00020009145) ENSACCG00020000360 CDK3 (ENSACCG00020000403) TEN1 (ENSACCG00020000425) ACOX1 (ENSACCG00020000467) FBF1 (ENSACCG00020000538) MRPL38 (ENSACCG00020000593) TRIM65 (ENSACCG00020000648) ENSACCG00020000681 WBP2 (ENSACCG00020000707) UNC13D (ENSACCG00020000926) UNK (ENSACCG00020001070) ENSACCG00020001146 #22 ENSACCG00020001162 GALK1 (ENSACCG00020001171) ITGB4 (ENSACCG00020001247) SAP30BP (ENSACCG00020001354) RECQL5 (ENSACCG00020001399) ENSACCG00020001444 ENSACCG00020001485 LLGL2 (ENSACCG00020001535) TSEN54 (ENSACCG00020001570) ENSACCG00020001593 CASKIN2 (ENSACCG00020001614) TMEM94 (ENSACCG00020001672) GRB2 (ENSACCG00020001714) SLC25A19 (ENSACCG00020001738) MIF4GD (ENSACCG00020001751) Galloanserae ANCESTRAL SPECIES 2 ENSGT00390000002970 ENSGT00390000013448.a.a ENSGT00570000079239 ENSGT00950000182834.B ##8 ENSGT00940000153634.b ENSGT00950000182834.A.a.b.c #8 ENSGT00390000000412 ENSGT00390000000417.a.a.b.a.b #11 ENSGT00940000165801 ENSGT00940000157376 #13 ENSGT00390000018505 #15 ENSGT00390000002210.d #16 ENSGT00940000159576 #17 ENSGT00390000010056 #20 ENSGT00530000063402.b #21 ENSGT01100000263504.a.b.a.a #22 ENSGT00530000063651.a #23 ENSGT00940000162190 #24 ENSGT00390000003188 #25 ENSGT00940000156058 #26 ENSGT00390000008003 #27 ENSGT00940000156764.a #28 ENSGT00940000157923 #29 ENSGT00940000156810 #30 ENSGT01030000234517.H.b #31 ENSGT00950000183114.a.a ENSGT00940000159274 ENSGT00940000160421 ENSGT00940000158182 ENSGT00940000160921 ENSGT00950000182836.a Phasianidae ANCESTRAL SPECIES ENSGT01100000263504.a.b.a.a #22 Phasianidae_b ANCESTRAL SPECIES ENSGT01100000263504.a.b.a.a #22 Chicken MODERN SPECIES 31 ECH1 (ENSGALG00010009232) ACTN4 (ENSGALG00010009277) MAP4K1 (ENSGALG00010009299) EIF3K (ENSGALG00010009330) RYR1 (ENSGALG00010009379) ENSGALG00010010765 SLC8A2 (ENSGALG00010010770) KPTN (ENSGALG00010010774) NAPA (ENSGALG00010010781) ENSGALG00010010789 BICRA (ENSGALG00010010800) EHD2 (ENSGALG00010010813) NOP53 (ENSGALG00010008186) ENSGALG00010008205 SELENOW (ENSGALG00010008215) H3-IX (ENSGALG00010008224) #22 OTX5 (ENSGALG00010008261) BCKDHA (ENSGALG00010008284) DMAC2 (ENSGALG00010008295) EXOSC5 (ENSGALG00010008310) TGFB1 (ENSGALG00010008327) CCDC97 (ENSGALG00010008331) HNRNPUL1 (ENSGALG00010008335) PLD3 (ENSGALG00010008342) ENSGALG00010008352 AKT2 (ENSGALG00010008377) PSMD8 (ENSGALG00010008401) ENSGALG00010010892 SMARCA4 (ENSGALG00010008408) ENSGALG00010008419 ENSGALG00010008428 Anatidae ANCESTRAL SPECIES 18 ENSGT00940000156895 ENSGT00390000003595 ENSGT01090000260051.a ENSGT00390000011856 ENSGT00940000153578.A ENSGT00940000153335.a.a ENSGT00390000017589 ENSGT00940000157287 ENSGT00720000108861 ENSGT00900000141125 ENSGT00940000161851 ENSGT00940000162951.b ENSGT00530000063718.a.a ENSGT00730000110939.b ENSGT00940000159360 ENSGT01100000263504.a.b.a.a #22 ENSGT00950000183187.B ENSGT01100000263555.b ENSGT00390000007870 ENSGT00520000062027 ENSGT00940000157800 ENSGT00930000151032.B.k.b ENSGT00930000151032.B.l ENSGT00950000182906.a.a.b ENSGT00390000004214 ENSGT00940000158256 ENSGT00390000016550 ENSGT00960000189697 ENSGT00940000155738 ENSGT00550000074902 ENSGT00940000153432.A.a Duck DUPLICATION Duck MODERN SPECIES 21 CENPF (ENSAPLG00000009924) PTPN14 (ENSAPLG00000010016) SMYD2 (ENSAPLG00000010622) PROX1 (ENSAPLG00000028813) RPS6KC1 (ENSAPLG00000011098) ANGEL2 (ENSAPLG00000011269) VASH2 (ENSAPLG00000011439) FLVCR1 (ENSAPLG00000011448) TATDN3 (ENSAPLG00000011801) NSL1 (ENSAPLG00000024285) BATF3 (ENSAPLG00000025402) ATF3 (ENSAPLG00000012304) ENSAPLG00000012312 #17 ENSAPLG00000013195 #20 SDE2 (ENSAPLG00000013231) #21 ENSAPLG00000024151 #22 ACBD3 (ENSAPLG00000013267) #23 MIXL1 (ENSAPLG00000025166) #24 LIN9 (ENSAPLG00000013627) #25 PARP1 (ENSAPLG00000014039) #26 STUM (ENSAPLG00000017920) #27 ITPKB (ENSAPLG00000014056) #28 PSEN2 (ENSAPLG00000014082) #29 COQ8A (ENSAPLG00000014501) #30 CDC42BPA (ENSAPLG00000012422) #31 XDH (ENSAPLG00000010946) EHD3 (ENSAPLG00000010467) GALNT14 (ENSAPLG00000009654) CAPN13 (ENSAPLG00000009169) LCLAT1 (ENSAPLG00000009124) LBH (ENSAPLG00000009024) Duck MODERN SPECIES 9 RNF157 (ENSAPLG00000004013) FOXJ1 (ENSAPLG00000003960) EXOC7 (ENSAPLG00000003256) GALR2 (ENSAPLG00000003239) SRP68 (ENSAPLG00000002532) ENSAPLG00000001088 CDK3 (ENSAPLG00000000888) TEN1 (ENSAPLG00000023536) ACOX1 (ENSAPLG00000016081) FBF1 (ENSAPLG00000015809) MRPL38 (ENSAPLG00000015690) ENSAPLG00000018146 WBP2 (ENSAPLG00000015622) UNC13D (ENSAPLG00000015199) UNK (ENSAPLG00000014891) ENSAPLG00000003917 #22 GALK1 (ENSAPLG00000013366) ITGB4 (ENSAPLG00000011722) SAP30BP (ENSAPLG00000011643) SMIM5 (ENSAPLG00000020078) RECQL5 (ENSAPLG00000011106) ENSAPLG00000010900 LLGL2 (ENSAPLG00000009521) TSEN54 (ENSAPLG00000009419) ENSAPLG00000001391 ENSAPLG00000028233 TMEM94 (ENSAPLG00000008675) ENSAPLG00000030191 GRB2 (ENSAPLG00000008555) SLC25A19 (ENSAPLG00000024769) MIF4GD (ENSAPLG00000025678) Lepidosauria ANCESTRAL SPECIES ENSGT00570000079239 ENSGT00940000170165 ENSGT00950000182834.B ##8 ENSGT00940000153634.b ENSGT00950000182834.A.a.b.c #8 ENSGT00390000000412 ENSGT00940000165101 ENSGT00390000000417.a.a.b.a.b #11 ENSGT00940000165801 ENSGT00940000157376 #13 ENSGT00390000018505 #15 ENSGT00390000002210.d #16 ENSGT00940000159576 #17 ENSGT00390000010056 #20 ENSGT00530000063402.b #21 ENSGT01100000263504.a.b.a.a #22 ENSGT00530000063651.a #23 ENSGT00390000003188 #25 ENSGT00940000156058 #26 ENSGT00390000008003 #27 ENSGT00940000156764.a #28 ENSGT00940000157923 #29 ENSGT00940000156810 #30 ENSGT01030000234517.H.b #31 ENSGT00950000183114.a.a ENSGT00940000162640 ENSGT00940000159274 ENSGT00940000160421 ENSGT00940000158182 ENSGT00940000160921 ENSGT00950000182836.a Episquamata ANCESTRAL SPECIES ENSGT00390000013448.a.a ENSGT00570000079239 ENSGT00950000182834.B ##8 ENSGT00940000153634.b ENSGT00950000182834.A.a.b.c #8 ENSGT00390000000412 ENSGT00940000165101 ENSGT00390000000417.a.a.b.a.b #11 ENSGT00940000165801 ENSGT00940000157376 #13 ENSGT00390000018505 #15 ENSGT00390000002210.d #16 ENSGT00940000159576 #17 ENSGT00390000010056 #20 ENSGT00530000063402.b #21 ENSGT01100000263504.a.b.a.a #22 ENSGT00530000063651.a #23 ENSGT00390000003188 #25 ENSGT00940000156058 #26 ENSGT00390000008003 #27 ENSGT00940000156764.a #28 ENSGT00940000157923 #29 ENSGT00940000156810 #30 ENSGT01030000234517.H.b #31 ENSGT00950000183114.a.a ENSGT00940000162640 ENSGT00940000159274 ENSGT00940000160421 ENSGT00940000158182 ENSGT00940000160921 ENSGT00950000182836.a Toxicofera ANCESTRAL SPECIES ENSGT00390000013448.a.a ENSGT00570000079239 ENSGT00950000182834.B ##8 ENSGT00940000153634.b ENSGT00950000182834.A.a.b.c #8 ENSGT00390000000412 ENSGT00940000165101 ENSGT00390000000417.a.a.b.a.b #11 ENSGT00940000165801 ENSGT00940000157376 #13 ENSGT00390000018505 #15 ENSGT00390000002210.d #16 ENSGT00940000159576 #17 ENSGT00390000010056 #20 ENSGT00530000063402.b #21 ENSGT01100000263504.a.b.a.a #22 ENSGT00530000063651.a #23 ENSGT00390000003188 #25 ENSGT00940000156058 #26 ENSGT00390000008003 #27 ENSGT00940000156764.a #28 ENSGT00940000157923 #29 ENSGT00940000156810 #30 ENSGT01030000234517.H.b #31 ENSGT00950000183114.a.a ENSGT00940000162640 ENSGT00940000159274 ENSGT00940000160421 ENSGT00940000158182 ENSGT00960000189514 ENSGT00940000160921 Elapidae ANCESTRAL SPECIES ENSGT00390000013448.a.a ENSGT00570000079239 ENSGT00950000182834.B ##8 ENSGT00940000153634.b ENSGT00950000182834.A.a.b.c #8 ENSGT00390000000412 ENSGT00940000165101 ENSGT00390000000417.a.a.b.a.b #11 ENSGT00940000165801 ENSGT00940000157376 #13 ENSGT00390000018505 #15 ENSGT00390000002210.d #16 ENSGT00940000159576 #17 ENSGT00390000010056 #20 ENSGT00530000063402.b #21 ENSGT01100000263504.a.b.a.a #22 ENSGT00530000063651.a #23 ENSGT00390000003188 #25 ENSGT00940000156058 #26 ENSGT00390000008003 #27 ENSGT00940000156764.a #28 ENSGT00940000157923 #29 ENSGT00940000156810 #30 ENSGT01030000234517.H.b #31 ENSGT00950000183114.a.a ENSGT00960000189414 ENSGT00940000160421 ENSGT00940000158182 ENSGT00960000189514 ENSGT00950000182836.a ENSGT00390000009189 Indian cobra MODERN SPECIES 1 FOXJ1 (ENSNNAG00000019121) EXOC7 (ENSNNAG00000019124) ENSNNAG00000019127 SRP68 (ENSNNAG00000019130) ENSNNAG00000019133 CDK3 (ENSNNAG00000019134) TEN1 (ENSNNAG00000019136) ACOX1 (ENSNNAG00000019143) FBF1 (ENSNNAG00000019149) MRPL38 (ENSNNAG00000019153) ENSNNAG00000019155 ENSNNAG00000019157 WBP2 (ENSNNAG00000019158) UNC13D (ENSNNAG00000019159) UNK (ENSNNAG00000019162) ENSNNAG00000019163 #22 ENSNNAG00000019164 ENSNNAG00000019166 ENSNNAG00000019167 ENSNNAG00000019168 ENSNNAG00000019169 SAP30BP (ENSNNAG00000019172) RECQL5 (ENSNNAG00000019174) ENSNNAG00000019175 ENSNNAG00000019176 LLGL2 (ENSNNAG00000019178) TSEN54 (ENSNNAG00000019179) ENSNNAG00000019180 ENSNNAG00000019181 TMEM94 (ENSNNAG00000019184) GRB2 (ENSNNAG00000019185) Elapidae_a ANCESTRAL SPECIES 2 ENSGT00390000013448.a.a ENSGT00570000079239 ENSGT00950000182834.B ##8 ENSGT00940000153634.b ENSGT00950000182834.A.a.b.c #8 ENSGT00390000000412 ENSGT00940000165101 ENSGT00390000000417.a.a.b.a.b #11 ENSGT00940000165801 ENSGT00940000157376 #13 ENSGT00390000018505 #15 ENSGT00390000002210.d #16 ENSGT00940000159576 #17 ENSGT00390000010056 #20 ENSGT00530000063402.b #21 ENSGT01100000263504.a.b.a.a #22 ENSGT00530000063651.a #23 ENSGT00390000003188 #25 ENSGT00940000156058 #26 ENSGT00390000008003 #27 ENSGT00940000156764.a #28 ENSGT00940000157923 #29 ENSGT00940000156810 #30 ENSGT01030000234517.H.b #31 ENSGT00950000183114.a.a ENSGT00960000189414 ENSGT00940000158182 ENSGT00960000189514 ENSGT00950000182836.a ENSGT00390000009189 ENSGT00940000154800 Blue-lipped sea krait MODERN SPECIES 10335 ENSLLTG00000011558 #22 Acanthophiinae ANCESTRAL SPECIES 3 ENSGT00390000013448.a.a ENSGT00570000079239 ENSGT00950000182834.B ##8 ENSGT00940000153634.b ENSGT00950000182834.A.a.b.c #8 ENSGT00390000000412 ENSGT00940000165101 ENSGT00390000000417.a.a.b.a.b #11 ENSGT00940000165801 ENSGT00940000157376 #13 ENSGT00390000018505 #15 ENSGT00390000002210.d #16 ENSGT00940000159576 #17 ENSGT00390000010056 #20 ENSGT00530000063402.b #21 ENSGT01100000263504.a.b.a.a #22 ENSGT00530000063651.a #23 ENSGT00390000003188 #25 ENSGT00940000156058 #26 ENSGT00390000008003 #27 ENSGT00940000156764.a #28 ENSGT00940000157923 #29 ENSGT00940000156810 #30 ENSGT01030000234517.H.b #31 ENSGT00950000183114.a.a ENSGT00960000189414 ENSGT00940000158182 ENSGT00960000189514 ENSGT00950000182836.a ENSGT00390000009189 ENSGT00940000154800 Mainland tiger snake MODERN SPECIES 3 DEGS1 (ENSNSUG00000009943) NVL (ENSNSUG00000009942) CNIH4 (ENSNSUG00000009941) ##8 WDR26 (ENSNSUG00000009940) CNIH3 (ENSNSUG00000009939) #8 ENSNSUG00000009938 ENSNSUG00000009937 LBR (ENSNSUG00000009936) #11 ENSNSUG00000009935 ENAH (ENSNSUG00000009934) #13 SRP9 (ENSNSUG00000009933) #15 EPHX1 (ENSNSUG00000009932) #16 TMEM63A (ENSNSUG00000009855) #17 ENSNSUG00000009854 #20 SDE2 (ENSNSUG00000009853) #21 ENSNSUG00000009852 #22 ACBD3 (ENSNSUG00000009851) #23 LIN9 (ENSNSUG00000009850) #25 PARP1 (ENSNSUG00000009467) #26 STUM (ENSNSUG00000009466) #27 ITPKB (ENSNSUG00000009465) #28 PSEN2 (ENSNSUG00000009464) #29 COQ8A (ENSNSUG00000009463) #30 ENSNSUG00000009462 CDC42BPA (ENSNSUG00000009460) #31 XDH (ENSNSUG00000009459) ENSNSUG00000009458 GALNT14 (ENSNSUG00000009455) ENSNSUG00000009454 LCLAT1 (ENSNSUG00000009452) LBH (ENSNSUG00000009450) Eastern brown snake MODERN SPECIES 5 FBXO28 (ENSPTXG00000012824) DEGS1 (ENSPTXG00000012823) NVL (ENSPTXG00000012820) CNIH4 (ENSPTXG00000012819) ##8 WDR26 (ENSPTXG00000012818) CNIH3 (ENSPTXG00000012817) #8 ENSPTXG00000012816 ENSPTXG00000012815 LBR (ENSPTXG00000012814) #11 ENAH (ENSPTXG00000012813) #13 SRP9 (ENSPTXG00000012812) #15 EPHX1 (ENSPTXG00000012811) #16 TMEM63A (ENSPTXG00000012810) #17 ENSPTXG00000012809 #20 SDE2 (ENSPTXG00000012808) #21 ENSPTXG00000012807 #22 ACBD3 (ENSPTXG00000012806) #23 LIN9 (ENSPTXG00000012798) #25 PARP1 (ENSPTXG00000012779) #26 STUM (ENSPTXG00000012777) #27 ITPKB (ENSPTXG00000012775) #28 PSEN2 (ENSPTXG00000012773) #29 COQ8A (ENSPTXG00000012772) #30 CDC42BPA (ENSPTXG00000012771) #31 XDH (ENSPTXG00000012770) ENSPTXG00000012769 GALNT14 (ENSPTXG00000012766) ENSPTXG00000012763 LCLAT1 (ENSPTXG00000012762) LBH (ENSPTXG00000012759) YPEL5 (ENSPTXG00000012758) Anura ANCESTRAL SPECIES 21 ENSGT00940000153463.b ENSGT00390000002970 ENSGT00390000013448.a.a ENSGT00570000079239 ENSGT00950000182834.B ##8 ENSGT00940000153634.b ENSGT00950000182834.A.a.b.c #8 ENSGT00940000165101 ENSGT00390000000417.a.a.b.a.b #11 ENSGT00940000157376 #13 ENSGT00390000018505 #15 ENSGT00390000002210.d #16 ENSGT00940000159576 #17 ENSGT00390000010056 #20 ENSGT00530000063402.b #21 ENSGT01100000263504.a.b.a.a #22 ENSGT00390000007539.c ENSGT00530000063651.a #23 ENSGT00390000003188 #25 ENSGT01030000234555.a.b ENSGT00940000156058 #26 ENSGT00390000008003 #27 ENSGT00940000156764.a #28 ENSGT00940000156810 #30 ENSGT01030000234517.H.b #31 ENSGT00390000017697.b ENSGT00950000183114.a.a ENSGT00940000159274 ENSGT00940000160421 ENSGT00940000158182 ENSGT00940000160921.h Frog MODERN SPECIES 5 degs1 (ENSXETG00000018586) nvl (ENSXETG00000018569) cnih4 (ENSXETG00000037711) ##8 wdr26 (ENSXETG00000018563) cnih3 (ENSXETG00000045361) #8 dnah14 (ENSXETG00000018553) lbr (ENSXETG00000018551) #11 enah (ENSXETG00000018550) #13 srp9 (ENSXETG00000040743) #15 ENSXETG00000041953 ephx1 (ENSXETG00000022654) #16 ENSXETG00000044567 tmem63a (ENSXETG00000022650) #17 lefty (ENSXETG00000043657) #20 sde2 (ENSXETG00000022643) #21 h3-3a (ENSXETG00000022641) #22 ENSXETG00000022637 acbd3 (ENSXETG00000022634) #23 bix1.1 (ENSXETG00000022633) bix1.2 (ENSXETG00000042078) mix1 (ENSXETG00000025923) ENSXETG00000048528 lin9 (ENSXETG00000022620) #25 ENSXETG00000036773 parp1 (ENSXETG00000022610) #26 stum (ENSXETG00000045792) #27 itpkb (ENSXETG00000022603) #28 coq8a (ENSXETG00000022587) #30 cdc42bpa (ENSXETG00000022112) #31 ENSXETG00000043363 ciao2b (ENSXETG00000040114) Actinopterygii ANCESTRAL SPECIES 1133 ENSGT01100000263504.a.b.a.a #22 ENSGT00940000171204 Neopterygii ANCESTRAL SPECIES 648 ENSGT00940000154096.b.b.a ENSGT01100000263504.a.b.a.a #22 ENSGT00940000171204 Spotted gar MODERN SPECIES 239 cited2 (ENSLOCG00000018112) txlnbb (ENSLOCG00000001251) heca (ENSLOCG00000001223) abracl (ENSLOCG00000001211) reps1 (ENSLOCG00000001188) ENSLOCG00000001178 ENSLOCG00000001162 ENSLOCG00000001147 ENSLOCG00000001114 pfn4 (ENSLOCG00000001090) ENSLOCG00000001077 itsn2b (ENSLOCG00000001031) gcfc2 (ENSLOCG00000001009) mrpl19 (ENSLOCG00000000969) ENSLOCG00000000948 h3f3c (ENSLOCG00000000915) #22 efhc1 (ENSLOCG00000000899) tram2 (ENSLOCG00000000868) xkr5a (ENSLOCG00000000839) gata4 (ENSLOCG00000000817) fdft1 (ENSLOCG00000000791) ctsba (ENSLOCG00000000768) ABHD1 (ENSLOCG00000000740) ENSLOCG00000000687 ENSLOCG00000000653 kcnk2b (ENSLOCG00000000545) Osteoglossocephalai ANCESTRAL SPECIES 30 ENSGT00940000159302 ENSGT00390000017365.b ENSGT01030000234592.A.b.a ENSGT00940000160692 ENSGT00940000165302 ENSGT00940000160957 ENSGT00940000158965 ENSGT00530000064222.a ENSGT00940000160533 ENSGT00940000156265 ENSGT00940000153792.A ENSGT00390000001278.a ENSGT00550000074807.c ENSGT00940000159120.e ENSGT01090000260005.a.b.a.b.b.j ENSGT01100000263504.a.b.a.a #22 ENSGT00940000171204 ENSGT01090000260005.a.b.a.b.b.i ENSGT00390000017267 ENSGT00940000160500 ENSGT00940000157514.a ENSGT00940000154866.A ENSGT00940000161057 ENSGT00940000160281 ENSGT00940000159610 ENSGT01030000234642.a.b.b.d.b.c.a ENSGT00940000165978 ENSGT00390000009409 ENSGT00940000160308 ENSGT00390000007686.a ENSGT00390000000417.a.a.b.b ##11 Osteoglossiformes ANCESTRAL SPECIES 305 ENSGT00940000160824 ENSGT00940000158822.g ENSGT01100000263504.a.b.a.a #22 ENSGT00940000154307.B.a ENSGT01100000265049 ENSGT00730000110939.a.g ENSGT00550000075088.a.a.a ENSGT00940000160374 ENSGT00940000155267 ENSGT00940000167095.B ENSGT00940000161466.b ENSGT00940000158074 ENSGT00390000009084 ENSGT00530000069547 ENSGT00940000159613 ENSGT00390000012918.d ENSGT00390000012857 ENSGT00390000001653 P. kingsleyae DUPLICATION P. kingsleyae MODERN SPECIES 156 ENSPKIG00000002512 rhot2 (ENSPKIG00000002446) NLRC3 (ENSPKIG00000002323) IGFALS (ENSPKIG00000002260) UNKL (ENSPKIG00000002101) ENSPKIG00000002029 #22 ENSPKIG00000002015 ENSPKIG00000001999 gper1 (ENSPKIG00000001986) ENSPKIG00000001974 BAIAP3 (ENSPKIG00000001914) ube2ia (ENSPKIG00000001867) ENSPKIG00000001840 ENSPKIG00000001822 pdpk1a (ENSPKIG00000001776) ENSPKIG00000001727 USP31 (ENSPKIG00000001681) ENSPKIG00000001663 hs3st2 (ENSPKIG00000001650) ENSPKIG00000001639 hs3st4 (ENSPKIG00000001629) P. kingsleyae MODERN SPECIES 290 fzd3a (ENSPKIG00000017850) KRTCAP3 (ENSPKIG00000017819) nrbp1 (ENSPKIG00000017755) KCTD3 (ENSPKIG00000017710) ENSPKIG00000017694 ENSPKIG00000017677 esrrga (ENSPKIG00000017623) spata17 (ENSPKIG00000017557) ENSPKIG00000017358 lpin1a (ENSPKIG00000017210) pfn4 (ENSPKIG00000017157) ITSN2 (ENSPKIG00000017027) gcfc2 (ENSPKIG00000016963) ENSPKIG00000016935 ENSPKIG00000016916 #22 tram2 (ENSPKIG00000016877) ENSPKIG00000016840 ENSPKIG00000016817 Clupeocephala ANCESTRAL SPECIES 6 ENSGT00390000015916 ENSGT00390000009825 ENSGT00940000156278 ENSGT00390000015579.a.a.b ENSGT00940000164514.a ENSGT00390000009925.a ENSGT00390000008825.a ENSGT00940000157696 ENSGT00550000075071 ENSGT00390000002628 ENSGT00940000163474 ENSGT00950000182979.a.b.b.b.b.i.a ENSGT00940000163663.B.a ENSGT00940000160824 ENSGT00940000158822 ENSGT01100000263504.a.b.a.a #22 ENSGT00510000049652 ENSGT00940000154307.A ENSGT00940000154307.B ENSGT01060000248742 ENSGT00730000110939.a ENSGT00550000075088.a.a ENSGT00940000160374 ENSGT00940000155267 ENSGT00940000167095.B ENSGT00510000049239.b.b ENSGT00390000001260 ENSGT00390000014665 ENSGT00510000048359 ENSGT00390000017838 ENSGT00390000006068 Euteleosteomorpha ANCESTRAL SPECIES 62 ENSGT00940000159641 ENSGT00940000154852.a ENSGT00530000066748 ENSGT00940000159861 ENSGT00390000008957 ENSGT00940000166280 ENSGT00940000171912 ENSGT00940000160173 ENSGT00940000158109 ENSGT00810000125570 ENSGT00940000160651 ENSGT00530000064671 ENSGT00940000159396 ENSGT00940000156610 ENSGT00390000000306 ENSGT01100000263504.a.b.a.a #22 ENSGT00510000049652 ENSGT00940000154307.A ENSGT00390000006068 ENSGT00390000017838 ENSGT00510000048359 ENSGT00390000014665 ENSGT00940000155267 ENSGT00940000160374 ENSGT00550000075088.a.a ENSGT00730000110939.a ENSGT01060000248742 ENSGT00940000167095.A ENSGT00940000166841 ENSGT00940000154323.a ENSGT00940000160435 Protacanthopterygii ANCESTRAL SPECIES 4 ENSGT00940000159664 ENSGT00940000156819.a.b ENSGT00940000157017.a.b.a ENSGT00390000005895.h ENSGT01030000234534.C ENSGT00390000005895.g ENSGT00390000014852.a ENSGT00390000004691 ENSGT00940000153514.a.b ENSGT00390000013574 ENSGT00900000141125 ENSGT00940000162951 ENSGT00530000063718.a.a ENSGT00730000110939.b ENSGT00940000159360 ENSGT01100000263504.a.b.a.a #22 ENSGT01100000263504.a.a ##35 ENSGT00940000167259 ENSGT00940000163587.a.b.a.c.b ENSGT01100000263555.b ENSGT00390000007870 ENSGT01000000216149 ENSGT00390000018570.b.a ENSGT00390000013268 ENSGT00940000167542 ENSGT00940000157510 ENSGT00940000155709.i ENSGT00940000162720.b.a.a.a ENSGT00940000156854.s ENSGT00940000154076.C.d ENSGT00950000182979.a.b.b.b.a.c Salmoninae ANCESTRAL SPECIES 360 ENSGT00940000160906.d ENSGT00940000167780 ENSGT00390000004836 ENSGT00940000159664.f.a ENSGT00940000156819.a.b.j ENSGT01030000234534.C ENSGT00390000005895.g ENSGT00390000014852.a ENSGT00390000004691.g ENSGT00940000153514.a.b.q.b ENSGT00390000013574 ENSGT00940000162951 ENSGT00530000063718.a.a.q ENSGT00730000110939.b.i ENSGT00940000159360.a ENSGT01100000263504.a.b.a.a #22 ENSGT00940000164977.a.b Huchen MODERN SPECIES 15 RDH13 (ENSHHUG00000043383) SBK1 (ENSHHUG00000043378) ENSHHUG00000043362 NLRC3 (ENSHHUG00000043305) cluap1 (ENSHHUG00000043264) ENSHHUG00000043243 WDR90 (ENSHHUG00000043116) ENSHHUG00000043100 rhot2 (ENSHHUG00000043080) h1-0 (ENSHHUG00000043049) rhbdl1 (ENSHHUG00000043045) zgc:112496 (ENSHHUG00000043040) wdr24 (ENSHHUG00000043032) anks3 (ENSHHUG00000043030) zgc:112185 (ENSHHUG00000043027) ENSHHUG00000042963 #22 ENSHHUG00000042962 ENSHHUG00000042961 ENSHHUG00000042960 C7orf50 (ENSHHUG00000042959) gnptg (ENSHHUG00000042934) tsr3 (ENSHHUG00000042929) pdpk1b (ENSHHUG00000042909) ENSHHUG00000042901 ENSHHUG00000042807 ENSHHUG00000042801 ENSHHUG00000042790 ccdc189 (ENSHHUG00000042777) phkg2 (ENSHHUG00000042737) RNF40 (ENSHHUG00000042722) ENSHHUG00000042717 Salmoninae_a ANCESTRAL SPECIES 45 ENSGT00940000160906.d ENSGT00940000167780 ENSGT00390000004836 ENSGT00940000159664.f.a ENSGT00940000156819.a.b.j ENSGT01030000234534.C ENSGT00390000005895.g ENSGT00390000014852.a ENSGT00390000004691.g ENSGT00940000153514.a.b.q.b ENSGT00390000013574 ENSGT00940000162951 ENSGT00530000063718.a.a.q ENSGT00730000110939.b.i ENSGT00940000159360.a ENSGT01100000263504.a.b.a.a #22 ENSGT00940000164977.a.b ENSGT00390000002548.i ENSGT01100000263504.a.b.a.b.a.a ##35 ENSGT00940000167259 ENSGT00940000163587.a.b.a.c.b.e ENSGT01100000263555.b.g.a ENSGT00390000007870.m ENSGT01000000216149.b ENSGT00390000018570.b.a.b ENSGT00390000013268 ENSGT00940000157510.b ENSGT00940000155709.i.c ENSGT00940000162720.b.a.a.a.b ENSGT00940000156854.s.y ENSGT00940000154076.C.d Oncorhynchus ANCESTRAL SPECIES 4 ENSGT01090000260061.c.b.id.a ENSGT00940000155677.b.j ENSGT00940000155677.b.i.b ENSGT00940000159782.b.b ENSGT00390000015655.a.m.b ENSGT00940000156648.c.a.b ENSGT00390000009497.a.d ENSGT00940000156536.e.a.h ENSGT00940000155350.h.d ENSGT00940000156251.b.a ENSGT00530000064411.b.f ENSGT00390000008610.a.b.b.a.a.a ENSGT00510000046732.A.c.r ENSGT00390000005140.a.o.b ENSGT00390000013989.b.e ENSGT01100000263504.a.b.a.a #22 ENSGT00940000164977.a.b ENSGT00390000002548.i ENSGT00940000155573.g.b.a ENSGT00510000048626 ENSGT00940000155478.hb.b.a ENSGT00940000164418.a.b.f ENSGT00950000182985.a.b.a.a ENSGT01030000234613.b.b.h.b ENSGT00940000159555.v.b.d.a.b ENSGT00950000182772.A.a.a.a.a.b.a.b.b.b.a ENSGT00950000182772.A.a.a.a.a.a ENSGT00940000173128.b ENSGT01030000234642.a.b.b.d.b.c.b.d ENSGT00940000162120.f.a.a ENSGT00950000183079.A.b.c.b.c Rainbow trout MODERN SPECIES 12 ENSOMYG00000012664 ENSOMYG00000012557 ENSOMYG00000069299 ENSOMYG00000012533 ENSOMYG00000051933 ogfod3 (ENSOMYG00000012520) ENSOMYG00000012462 ENSOMYG00000068594 ENSOMYG00000056621 NARF (ENSOMYG00000012350) ENSOMYG00000012092 ENSOMYG00000012061 wbp2 (ENSOMYG00000012053) UNC13D (ENSOMYG00000012040) unk (ENSOMYG00000011844) ENSOMYG00000011799 #22 ENSOMYG00000056335 zgc:194990 (ENSOMYG00000011787) ITGB4 (ENSOMYG00000010633) sap30bp (ENSOMYG00000010225) ENSOMYG00000010177 ENSOMYG00000059458 ENSOMYG00000010163 ENSOMYG00000010142 ENSOMYG00000010109 ENSOMYG00000010057 ENSOMYG00000010022 ENSOMYG00000010009 ENSOMYG00000008960 ENSOMYG00000007209 ENSOMYG00000007056 Oncorhynchus_a ANCESTRAL SPECIES 2 ENSGT00820000127055.a.b.a ENSGT01090000260061.c.b.id.a ENSGT00940000155677.b.j ENSGT00940000159782.b.b ENSGT00390000015655.a.m.b ENSGT00940000156648.c.a.b ENSGT00390000009497.a.d ENSGT00940000156536.e.a.h ENSGT00940000155350.h.d ENSGT00940000156251.b.a ENSGT00530000064411.b.f ENSGT00390000008610.a.b.b.a.a.a ENSGT00510000046732.A.c.r ENSGT00390000005140.a.o.b ENSGT00390000013989.b.e ENSGT01100000263504.a.b.a.a #22 ENSGT00940000164977.a.b ENSGT00390000002548.i ENSGT00940000155573.g.b.a ENSGT00510000048626 ENSGT00940000155478.hb.b.a ENSGT00940000164418.a.b.f ENSGT00950000182985.a.b.a.a ENSGT01030000234613.b.b.h.b ENSGT00940000159555.v.b.d.a.b ENSGT00950000182772.A.a.a.a.a.b.a.b.b.b.a ENSGT00950000182772.A.a.a.a.a.a ENSGT00940000173784 ENSGT01030000234642.a.b.b.d.b.c.b.d ENSGT00940000162120.f.a.a ENSGT00950000183079.A.b.c.b.c Chinook salmon MODERN SPECIES 33 ENSOTSG00005046427 ENSOTSG00005046426 ENSOTSG00005046425 gria4b (ENSOTSG00005044976) slc35f2 (ENSOTSG00005044958) CUL5 (ENSOTSG00005044924) ompb (ENSOTSG00005044916) CAPN5 (ENSOTSG00005044907) MYO7A (ENSOTSG00005044905) GDPD4 (ENSOTSG00005044903) ENSOTSG00005044901 ENSOTSG00005044899 FCHSD2 (ENSOTSG00005044891) fam168a (ENSOTSG00005044888) plekhb1 (ENSOTSG00005044887) ENSOTSG00005044886 #22 crx (ENSOTSG00005044885) ENSOTSG00005044884 nova1 (ENSOTSG00005044883) alkbh6 (ENSOTSG00005044882) ENSOTSG00005044881 dlb (ENSOTSG00005044880) ppp1r14aa (ENSOTSG00005044879) EXOC3L2 (ENSOTSG00005044878) MARK4 (ENSOTSG00005044877) ckma (ENSOTSG00005044876) ENSOTSG00005044875 hnrnpl (ENSOTSG00005044743) IRF2BP1 (ENSOTSG00005044741) micu2 (ENSOTSG00005044738) B3GAT1 (ENSOTSG00005044736) Coho salmon MODERN SPECIES 17 SPATA20 (ENSOKIG00005042907) ENSOKIG00005043691 CACNA1G (ENSOKIG00005043760) ENSOKIG00005044519 ENSOKIG00005044542 ogfod3 (ENSOKIG00005044548) hexdc (ENSOKIG00005044588) cybc1 (ENSOKIG00005044841) narf (ENSOKIG00005044867) FDXR (ENSOKIG00005044967) ENSOKIG00005045713 wbp2 (ENSOKIG00005045723) UNC13D (ENSOKIG00005045733) ENSOKIG00005045811 unk (ENSOKIG00005045818) ENSOKIG00005045847 #22 ENSOKIG00005045860 zgc:194990 (ENSOKIG00005045867) ENSOKIG00005045873 ENSOKIG00005045875 itgb4 (ENSOKIG00005045986) sap30bp (ENSOKIG00005048033) CDR2L (ENSOKIG00005048045) MRPL58 (ENSOKIG00005048052) wdr45b (ENSOKIG00005048063) FOXK2 (ENSOKIG00005048112) SHISA6 (ENSOKIG00005048134) ENSOKIG00005048202 MYOCD (ENSOKIG00005048376) map2k4b (ENSOKIG00005048408) adprm (ENSOKIG00005048459) Salmo ANCESTRAL SPECIES 22 ENSGT00390000007686.a.b ENSGT00940000160308.b ENSGT00390000009409.mb ENSGT00940000165978 ENSGT00940000159343 ENSGT00940000158344.a.a.c ENSGT00910000144115.b.dc.b.a ENSGT01030000234642.a.b.b.d.b.c.a.d ENSGT00940000159610.n ENSGT00940000160281.o ENSGT00940000161057.h ENSGT00940000154866.A.f ENSGT00940000160500 ENSGT01090000260005.a.b.a.b.b.i.c ENSGT00390000017267.c ENSGT01100000263504.a.b.a.a #22 ENSGT01100000263504.a.a.ob.b ##35 ENSGT00940000164977.b.f ENSGT00550000074807.c.e.a ENSGT00940000153792.A.i ENSGT00940000156265.h ENSGT00940000160533.b ENSGT00530000064222.a.a ENSGT00940000158965.o ENSGT00940000160957.g ENSGT00940000165302.d ENSGT00940000160692.e.b ENSGT01030000234592.A.b.a.db.a.a ENSGT00390000017365.a.a.b.a ENSGT00940000159302 ENSGT00940000154525.b.b.b River trout MODERN SPECIES 4 hif1al (ENSSTUG00000039467) DMWD (ENSSTUG00000039460) ENSSTUG00000039449 eif3k (ENSSTUG00000039423) zgc:85932 (ENSSTUG00000039404) ACTN4 (ENSSTUG00000038487) SLC8A2 (ENSSTUG00000038379) srsf7a (ENSSTUG00000038365) ENSSTUG00000038280 ech1 (ENSSTUG00000038126) ENSSTUG00000038094 meis3 (ENSSTUG00000037976) dmac2 (ENSSTUG00000037953) GJD2 (ENSSTUG00000037943) nop53 (ENSSTUG00000037882) ENSSTUG00000037875 #22 ENSSTUG00000037854 ENSSTUG00000037832 psma6l (ENSSTUG00000037809) sars2 (ENSSTUG00000037529) si:dkey-260j18.2 (ENSSTUG00000037498) ENSSTUG00000037482 fbxo46 (ENSSTUG00000037476) coq8b (ENSSTUG00000036786) numbl (ENSSTUG00000036741) ENSSTUG00000036656 dpf1 (ENSSTUG00000036601) ENSSTUG00000036588 ENSSTUG00000036577 ENSSTUG00000036572 ENSSTUG00000036568 Atlantic salmon DUPLICATION Atlantic salmon MODERN SPECIES 4 elmod1 (ENSSSAG00000080315) slc35f2 (ENSSSAG00000080322) ENSSSAG00000121221 ENSSSAG00000001142 ompb (ENSSSAG00000080367) MYO7A (ENSSSAG00000080375) ENSSSAG00000080446 ENSSSAG00000103892 ENSSSAG00000080449 ENSSSAG00000107926 ENSSSAG00000111902 ENSSSAG00000102749 ENSSSAG00000080466 ENSSSAG00000011048 ENSSSAG00000011266 h3f3a (ENSSSAG00000011330) #22 ENSSSAG00000011401 ENSSSAG00000102383 ENSSSAG00000122286 nova1 (ENSSSAG00000011478) alkbh6 (ENSSSAG00000011720) capns1a (ENSSSAG00000011852) dlb (ENSSSAG00000075986) ppp1r14aa (ENSSSAG00000089852) ENSSSAG00000012320 ENSSSAG00000093155 ENSSSAG00000087356 ENSSSAG00000013065 ENSSSAG00000096877 ckm3 (ENSSSAG00000015360) SFRS7 (ENSSSAG00000015467) Atlantic salmon MODERN SPECIES 28 ENSSSAG00000106601 ENSSSAG00000064553 ENSSSAG00000064454 ENSSSAG00000113410 ENSSSAG00000048510 ENSSSAG00000085876 ENSSSAG00000046230 ENSSSAG00000098949 ech1 (ENSSSAG00000044971) ENSSSAG00000044874 meis3 (ENSSSAG00000109909) ENSSSAG00000044807 dmac2 (ENSSSAG00000044797) ENSSSAG00000044772 nop53 (ENSSSAG00000044707) ENSSSAG00000044665 #22 h3f3a (ENSSSAG00000095049) ##35 ENSSSAG00000103523 ENSSSAG00000121667 ENSSSAG00000044595 si:dkey-260j18.2 (ENSSSAG00000044497) ENSSSAG00000042477 fbxo46 (ENSSSAG00000042440) coq8b (ENSSSAG00000042284) numbl (ENSSSAG00000042218) ENSSSAG00000048744 dpf1 (ENSSSAG00000095651) ENSSSAG00000053210 ENSSSAG00000094013 ENSSSAG00000101842 ENSSSAG00000109424 Atlantic salmon MODERN SPECIES 12 hif1a (ENSSSAG00000057212) ENSSSAG00000110379 ENSSSAG00000057098 ENSSSAG00000057129 actn4 (ENSSSAG00000056108) ENSSSAG00000094654 ENSSSAG00000109272 ENSSSAG00000090587 ech1 (ENSSSAG00000082032) ENSSSAG00000053130 meis3 (ENSSSAG00000105888) rinl (ENSSSAG00000053056) sirt2 (ENSSSAG00000052791) ENSSSAG00000121281 nop53 (ENSSSAG00000052779) h3f3a (ENSSSAG00000089325) #22 h3f3a (ENSSSAG00000052774) ##35 ENSSSAG00000052766 ENSSSAG00000052764 ENSSSAG00000052749 ENSSSAG00000103032 sars2 (ENSSSAG00000120889) si:dkey-260j18.2 (ENSSSAG00000084907) slc5a2 (ENSSSAG00000052423) fbxo46 (ENSSSAG00000115363) coq8b (ENSSSAG00000048832) numbl (ENSSSAG00000119287) ENSSSAG00000041640 dpf1 (ENSSSAG00000088639) ENSSSAG00000019907 ##35 ENSSSAG00000042480 Acanthomorphata ANCESTRAL SPECIES 23 ENSGT00940000153801.a ENSGT00940000159641 ENSGT00940000154852.a ENSGT00530000066748 ENSGT00940000159861 ENSGT00390000008957 ENSGT00940000157969 ENSGT00940000160173 ENSGT00940000158109 ENSGT00810000125570 ENSGT00940000160651 ENSGT00530000064671 ENSGT00940000159396 ENSGT00940000156610 ENSGT00390000000306 ENSGT01100000263504.a.b.a.a #22 ENSGT00510000049652 ENSGT00940000154307.A ENSGT00390000006068 ENSGT00390000017838 ENSGT00510000048359 ENSGT00390000014665 ENSGT00940000155267 ENSGT00940000160374 ENSGT00550000075088.a.a ENSGT00940000167095.A ENSGT00940000166841 ENSGT00940000154323.a ENSGT00940000160435 ENSGT00390000002866.a ENSGT00650000094874 Euacanthomorphacea ANCESTRAL SPECIES 6 ENSGT00440000033742.a.a ENSGT00940000153801.a ENSGT00940000159641 ENSGT00940000154852.a ENSGT00530000066748 ENSGT00940000159861 ENSGT00940000157969 ENSGT00940000160173 ENSGT00940000158109 ENSGT00810000125570 ENSGT00940000160651 ENSGT00530000064671 ENSGT00940000159396 ENSGT00940000156610 ENSGT00390000000306 ENSGT01100000263504.a.b.a.a #22 ENSGT00510000049652 ENSGT00940000154307.A ENSGT00390000006068 ENSGT00390000017838 ENSGT00510000048359 ENSGT00390000014665 ENSGT00940000155267 ENSGT00940000160374 ENSGT00550000075088.a.a ENSGT00940000167095.A ENSGT00940000166841 ENSGT00940000154323.a ENSGT00940000160435 ENSGT00390000002866.a ENSGT00650000094874 Pinecone sodierfish MODERN SPECIES 10 SPATA20 (ENSMMDG00005013740) ENSMMDG00005014310 ENSMMDG00005014322 UTS2R (ENSMMDG00005014324) ENSMMDG00005014326 ogfod3 (ENSMMDG00005014327) hexdc (ENSMMDG00005014336) cybc1 (ENSMMDG00005014346) narf (ENSMMDG00005014349) FDXR (ENSMMDG00005014426) mrpl38 (ENSMMDG00005016485) ENSMMDG00005016489 wbp2 (ENSMMDG00005016492) UNC13D (ENSMMDG00005016498) unk (ENSMMDG00005016510) ENSMMDG00005016514 #22 ENSMMDG00005016517 zgc:194990 (ENSMMDG00005016522) itgb4 (ENSMMDG00005016547) sap30bp (ENSMMDG00005016862) ENSMMDG00005016869 CDR2L (ENSMMDG00005016872) mrpl58 (ENSMMDG00005016874) DAGLB (ENSMMDG00005016899) SPAG9 (ENSMMDG00005017338) tob1b (ENSMMDG00005017695) ENSMMDG00005017697 ENSMMDG00005017787 ENSMMDG00005022900 sult2st2 (ENSMMDG00005022907) ENSMMDG00005022914 Percomorphaceae ANCESTRAL SPECIES 5 ENSGT00440000033742.a.a ENSGT00940000153801.a ENSGT00940000159641 ENSGT00940000154852.a ENSGT00530000066748 ENSGT00940000159861 ENSGT00940000157969 ENSGT00940000160173 ENSGT00940000158109 ENSGT00810000125570 ENSGT00940000160651 ENSGT00530000064671 ENSGT00940000159396 ENSGT00940000156610 ENSGT00390000000306 ENSGT01100000263504.a.b.a.a #22 ENSGT00510000049652 ENSGT00940000154307.A ENSGT00390000006068 ENSGT00390000017838 ENSGT00510000048359 ENSGT00390000014665 ENSGT00940000155267 ENSGT00940000160374 ENSGT00550000075088.a.a ENSGT00940000167095.A ENSGT00940000166841 ENSGT00940000154323.a ENSGT00940000160435 ENSGT00390000002866.a ENSGT00650000094874 Tiger tail seahorse MODERN SPECIES 517 rbp2a (ENSHCOG00000016710) mrps22 (ENSHCOG00000016713) foxl2b (ENSHCOG00000016718) PIK3CB (ENSHCOG00000016759) PER2 (ENSHCOG00000016767) her13 (ENSHCOG00000016789) her8.2 (ENSHCOG00000016804) ENSHCOG00000016829 ITM2C (ENSHCOG00000016875) meis3 (ENSHCOG00000016923) ENSHCOG00000016940 sirt2 (ENSHCOG00000016976) dmac2 (ENSHCOG00000017106) GJD2 (ENSHCOG00000017119) nop53 (ENSHCOG00000017133) ENSHCOG00000017138 #22 H3-3B (ENSHCOG00000017147) ##35 ENSHCOG00000017163 ENSHCOG00000017249 sars2 (ENSHCOG00000017362) si:dkey-260j18.2 (ENSHCOG00000017384) fbxo46 (ENSHCOG00000017386) coq8b (ENSHCOG00000017402) ENSHCOG00000017433 aplp2 (ENSHCOG00000017476) ENSHCOG00000017485 dhx34 (ENSHCOG00000017578) spred3 (ENSHCOG00000017617) psmd8 (ENSHCOG00000017646) nup88 (ENSHCOG00000017651) EHD2 (ENSHCOG00000017683) Percomorphaceae_B ANCESTRAL SPECIES 4 ENSGT00530000066748 ENSGT00940000159861 ENSGT00940000157969 ENSGT00940000171912 ENSGT00940000160173 ENSGT00940000158109 ENSGT00810000125570 ENSGT00940000160651 ENSGT00530000064671 ENSGT00940000159396 ENSGT00940000156610 ENSGT00390000000306 ENSGT01100000263504.a.a ##35 ENSGT01100000263504.a.b.b.a.b ##35 ENSGT00510000049652 ENSGT01100000263504.a.b.a.a #22 ENSGT01030000235280 ENSGT00940000154307.A ENSGT00390000006068 ENSGT00390000017838 ENSGT00510000048359 ENSGT00390000014665 ENSGT00940000155267 ENSGT00940000160374 ENSGT00550000075088.a.a ENSGT00940000167095.A ENSGT00940000166841 ENSGT00940000154323.a ENSGT00940000160435 ENSGT00390000002866.a ENSGT00650000094874 Ovalentaria ANCESTRAL SPECIES 13 ENSGT00940000156819.a.b ENSGT00940000157017.a.b.a ENSGT00390000005895 ENSGT00390000014852.a ENSGT00390000004691 ENSGT00940000153514.a.b ENSGT00940000178199 ENSGT00390000013574 ENSGT00900000141125 ENSGT00940000162951 ENSGT00530000063718.a.a ENSGT00730000110939.b ENSGT00940000159360 ENSGT01100000263504.a.b.b.a.b ##35 ENSGT00510000049652 ENSGT01100000263504.a.b.a.a #22 ENSGT01100000263504.a.a ##35 ENSGT00940000167259 ENSGT00940000163587.a.b.a.c.b ENSGT01100000263555.b ENSGT00390000007870 ENSGT00940000176223 ENSGT00390000018570.b.a ENSGT00940000167542 ENSGT00940000156486 ENSGT00940000153496.a.b.a ENSGT00940000154208.c.b ENSGT00940000158031.c ENSGT00940000163867 ENSGT00940000164726.b ENSGT00940000164900 Ovalentaria_B ANCESTRAL SPECIES 28 ENSGT00960000186809 ENSGT00940000159664 ENSGT00940000156819.a.b ENSGT00940000157017.a.b.a ENSGT00390000005895 ENSGT00390000014852.a ENSGT00390000004691 ENSGT00940000153514.a.b ENSGT00940000178199 ENSGT00390000013574 ENSGT00900000141125 ENSGT00940000162951 ENSGT00530000063718.a.a ENSGT00730000110939.b ENSGT00940000159360 ENSGT01100000263504.a.b.a.a #22 ENSGT00510000049652 ENSGT01100000263504.a.a ##35 ENSGT00940000167259 ENSGT00940000163587.a.b.a.c.b ENSGT01100000263555.b ENSGT00390000007870 ENSGT00940000176223 ENSGT00390000018570.b.a ENSGT00940000167542 ENSGT00940000156486 ENSGT00940000153496.a.b.a ENSGT00940000154208.c.b ENSGT00940000160624 ENSGT00940000158031.c ENSGT00940000163867 Cichlidae ANCESTRAL SPECIES 33 ENSGT00940000156342.d ENSGT00940000161398.e ENSGT00940000164578.a.a ENSGT00390000004360.a.a ENSGT00950000183115.a.a.a ENSGT00950000183136.b.b.d.a.a.b ENSGT00950000183136.b.b.d.b ENSGT00950000183136.b.b.d.a.a.a ENSGT00940000160281 ENSGT00940000161057 ENSGT00940000154866.A ENSGT00940000157514.a ENSGT00940000160500 ENSGT01090000260005.a.b.a.b.b.i ENSGT00390000017267 ENSGT01100000263504.a.b.a.a #22 ENSGT00510000049652 ENSGT01100000263504.a.a ##35 ENSGT00940000164977.b ENSGT00550000074807.c ENSGT00390000001278.a ENSGT00940000153792.A ENSGT00940000156265 ENSGT00940000160533 ENSGT00530000064222.a ENSGT00940000158965 ENSGT00940000160957 ENSGT00940000165302 ENSGT00940000160692 ENSGT01030000234592.A.b.a ENSGT00390000017365.b.bc Pseudocrenilabrinae ANCESTRAL SPECIES 9 ENSGT00730000111029.a ENSGT00940000166161 ENSGT00940000154322.B ENSGT00940000158269.f.a ENSGT00940000167859 ENSGT00730000111333.b ENSGT00390000008566.b ENSGT01010000229225 ENSGT00940000178199 ENSGT00390000013574 ENSGT00900000141125 ENSGT00940000162951 ENSGT00530000063718.a.a ENSGT00730000110939.b ENSGT00940000159360 ENSGT01100000263504.a.b.a.a #22 ENSGT00510000049652 ENSGT01100000263504.a.a ##35 ENSGT00940000167259 ENSGT00940000163587.a.b.a.c.b ENSGT01100000263555.b ENSGT00390000007870 ENSGT00940000176223 ENSGT00390000018570.b.a ENSGT00940000167542 ENSGT00940000156486 ENSGT00940000153496.a.b.a ENSGT00940000154208.c.b ENSGT00940000160624 ENSGT00940000158031.c ENSGT00940000163867 Pseudocrenilabrinae_A ANCESTRAL SPECIES 25 ENSGT00940000164578.a.a ENSGT00390000004360.a.a ENSGT00950000183115.a.a.a ENSGT00950000183136.b.b.d.a.a.a ENSGT00950000183136.b.b.d.a.a.b.b ENSGT00950000183136.b.b.d.a.a.b.a ENSGT00950000183136.b.b.d.b ENSGT00950000183136.b.b.d.a.b ENSGT00940000160281 ENSGT00940000161057 ENSGT00940000154866.A ENSGT00940000157514.a ENSGT00940000160500 ENSGT01090000260005.a.b.a.b.b.i ENSGT00390000017267 ENSGT01100000263504.a.b.a.a #22 ENSGT00940000164977.b ENSGT00550000074807.c ENSGT00390000001278.a ENSGT00940000153792.A ENSGT00940000156265 ENSGT00940000160533 ENSGT00530000064222.a ENSGT00940000158965 ENSGT00940000160957 ENSGT00940000165302 ENSGT00940000160692 ENSGT00390000017365.b.bc.a.b ENSGT00390000017365.b.ac.b ENSGT00390000017365.b.ac.a.b ENSGT00990000207027 Haplochromini ANCESTRAL SPECIES 35 ENSGT00940000156342.d ENSGT00940000161398.e ENSGT00940000164578.a.a ENSGT00390000004360.a.a ENSGT00950000183115.a.a.a ENSGT00950000183136.b.b.d.a.a.a.a.a ENSGT00950000183136.b.b.d.a.a.a.a.b ENSGT00950000183136.b.b.d.a.a.a.b ENSGT00940000160281 ENSGT00940000161057 ENSGT00940000154866.A ENSGT00940000157514.a ENSGT00940000160500 ENSGT01090000260005.a.b.a.b.b.i ENSGT00390000017267 ENSGT01100000263504.a.b.a.a #22 ENSGT00940000164977.b ENSGT00550000074807.c ENSGT00390000001278.a ENSGT00940000153792.A ENSGT00940000156265 ENSGT00940000160533 ENSGT00530000064222.a ENSGT00940000158965 ENSGT00940000160957 ENSGT00940000165302 ENSGT00940000160692 ENSGT00390000017365.b.bc.a.b ENSGT00390000017365.b.ac.b ENSGT00940000159302 ENSGT00940000165141.a Burton s mouthbrooder MODERN SPECIES 349 PER2 (ENSHBUG00000000709) her13 (ENSHBUG00000023176) her8.2 (ENSHBUG00000023184) ENSHBUG00000023216 ITM2C (ENSHBUG00000023261) lpar5b (ENSHBUG00000023274) lpar5b (ENSHBUG00000023292) ENSHBUG00000023359 meis3 (ENSHBUG00000023485) ENSHBUG00000023507 sirt2 (ENSHBUG00000023526) dmac2 (ENSHBUG00000023540) GJD2 (ENSHBUG00000023556) nop53 (ENSHBUG00000023625) ENSHBUG00000023636 ##35 ENSHBUG00000023653 #22 ENSHBUG00000023669 psma6l (ENSHBUG00000023708) ENSHBUG00000023820 sars2 (ENSHBUG00000023829) si:dkey-260j18.2 (ENSHBUG00000001323) slc5a2 (ENSHBUG00000001326) fbxo46 (ENSHBUG00000001328) coq8b (ENSHBUG00000001335) numbl (ENSHBUG00000000006) ENSHBUG00000001342 dpf1 (ENSHBUG00000001350) ENSHBUG00000000007 ENSHBUG00000001371 ENSHBUG00000001373 ENSHBUG00000001379 Haplochromini_A ANCESTRAL SPECIES 41 ENSGT00940000178436 ENSGT00940000153972.B ENSGT00940000158793 ENSGT00390000016247 ENSGT00940000159193 ENSGT00940000155457.a.a.d ENSGT00390000013593 ENSGT00940000157231.a.a ENSGT00390000017627.b ENSGT00940000177515 ENSGT00940000155900.i ENSGT00940000156937.a.a ENSGT00950000183064.a.b.a.b ENSGT00940000154313.c.a.n.b ENSGT00940000154313.c.a.n.a ENSGT01100000263504.a.b.a.a #22 ENSGT00940000164977.a ENSGT00390000002548 ENSGT00940000155573.g.b ENSGT00940000155478.hb.b ENSGT00450000040324.a.a.a ENSGT00940000164418.a.b ENSGT00950000182985.a.b.a ENSGT01030000234613.b.b.h ENSGT00940000159555.v.b ENSGT00950000182772.A.a.a.b.r.a ENSGT01100000264924 ENSGT00940000161313 ENSGT00940000158344.a.b ENSGT01030000234642.a.b.b.d.b.c.b ENSGT00940000162120.f.a Haplochromini_B ANCESTRAL SPECIES 46 ENSGT00940000153972.B ENSGT00940000158793 ENSGT00390000016247 ENSGT00940000159193 ENSGT00940000155457.a.a.d ENSGT00390000013593 ENSGT00940000157231.a.a ENSGT00390000017627.b ENSGT00940000177515 ENSGT00940000155900.i ENSGT00940000156937.a.a ENSGT00950000183064.a.b.a.b ENSGT00940000154313.c.a.n.b ENSGT01100000263504.a.b.a.b.a.b ##35 ENSGT00940000154313.c.a.n.a ENSGT01100000263504.a.b.a.a #22 ENSGT00940000164977.a ENSGT00390000002548 ENSGT00940000155573.g.b ENSGT00940000155478.hb.b ENSGT00450000040324.a.a.a ENSGT00940000164418.a.b ENSGT00950000182985.a.b.a ENSGT01030000234613.b.b.h ENSGT00940000159555.v.b ENSGT00950000182772.A.a.a.b.r.a ENSGT01100000264924 ENSGT00940000161313 ENSGT00940000158344.a.b ENSGT01030000234642.a.b.b.d.b.c.b ENSGT00940000162120.f.a Eastern happy DUPLICATION Eastern happy MODERN SPECIES 1 MSANTD2 (ENSACLG00000002427) esama (ENSACLG00000002453) fez1 (ENSACLG00000002458) ENSACLG00000002495 IGSF9B (ENSACLG00000002515) ENSACLG00000002579 ENSACLG00000002607 jam3b (ENSACLG00000002625) vps26bl (ENSACLG00000002642) ENSACLG00000002681 ARHGAP32 (ENSACLG00000002707) ENSACLG00000002796 ##35 ENSACLG00000002816 ENSACLG00000002837 ##35 ENSACLG00000002860 h3f3c (ENSACLG00000002870) #22 crx (ENSACLG00000002886) ENSACLG00000002904 kptn (ENSACLG00000002914) nova1 (ENSACLG00000003002) capns1b (ENSACLG00000003030) zgc:153990 (ENSACLG00000003052) dlb (ENSACLG00000003314) ppp1r14aa (ENSACLG00000003348) ENSACLG00000003357 MARK4 (ENSACLG00000003377) ckma (ENSACLG00000003506) ENSACLG00000003530 nccrp1 (ENSACLG00000003541) slc8a2a (ENSACLG00000003573) hnrnpl (ENSACLG00000003627) Eastern happy MODERN SPECIES 5 ENSACLG00000012193 ENSACLG00000012181 lpar5b (ENSACLG00000012151) lpar5b (ENSACLG00000012146) lpar5b (ENSACLG00000012128) lpar5b (ENSACLG00000012114) lpar5b (ENSACLG00000012100) lpar5b (ENSACLG00000012092) ENSACLG00000012073 meis3 (ENSACLG00000012034) ENSACLG00000012022 sirt2 (ENSACLG00000011953) dmac2 (ENSACLG00000011868) GJD2 (ENSACLG00000011848) nop53 (ENSACLG00000011832) ENSACLG00000011800 #22 ENSACLG00000011785 psma6l (ENSACLG00000011745) ENSACLG00000011693 sars2 (ENSACLG00000011683) si:dkey-260j18.2 (ENSACLG00000011675) slc5a2 (ENSACLG00000011662) fbxo46 (ENSACLG00000011657) coq8b (ENSACLG00000011621) numbl (ENSACLG00000011583) ENSACLG00000011437 ENSACLG00000011426 dpf1 (ENSACLG00000011411) ENSACLG00000011404 ENSACLG00000011396 ENSACLG00000011388 Nile tilapia DUPLICATION Nile tilapia MODERN SPECIES 20 ENSONIG00000019627 ENSONIG00000021201 ENSONIG00000034310 sox9a (ENSONIG00000031106) ENSONIG00000019625 ENSONIG00000029456 ENSONIG00000033030 LRRC18 (ENSONIG00000019622) ENSONIG00000038418 FDXR (ENSONIG00000019621) mrpl38 (ENSONIG00000019618) ENSONIG00000019615 wbp2 (ENSONIG00000019613) UNC13D (ENSONIG00000019611) unk (ENSONIG00000019608) ENSONIG00000037692 #22 ENSONIG00000033714 zgc:194990 (ENSONIG00000019606) itgb4 (ENSONIG00000019600) sap30bp (ENSONIG00000019599) CDR2L (ENSONIG00000019598) MRPL58 (ENSONIG00000019597) DAGLB (ENSONIG00000019595) SPAG9 (ENSONIG00000019590) tob1b (ENSONIG00000021200) WFIKKN2 (ENSONIG00000019589) ENSONIG00000019586 ENSONIG00000019585 sult2st2 (ENSONIG00000019581) ENSONIG00000027287 bsk146 (ENSONIG00000019578) Nile tilapia MODERN SPECIES 5 lpar5b (ENSONIG00000035817) lpar5b (ENSONIG00000030598) lpar5b (ENSONIG00000031177) ENSONIG00000021150 lpar5b (ENSONIG00000033813) ENSONIG00000039174 lpar5b (ENSONIG00000016611) ENSONIG00000038920 ENSONIG00000016613 meis3 (ENSONIG00000016615) ENSONIG00000028946 sirt2 (ENSONIG00000016619) ENSONIG00000016623 GJD2 (ENSONIG00000021151) nop53 (ENSONIG00000016624) ENSONIG00000031544 #22 ENSONIG00000016630 psma6l (ENSONIG00000016632) ENSONIG00000030248 sars2 (ENSONIG00000016635) si:dkey-260j18.2 (ENSONIG00000016640) slc5a2 (ENSONIG00000016641) fbxo46 (ENSONIG00000029952) coq8b (ENSONIG00000016647) numbl (ENSONIG00000016648) ENSONIG00000016650 dpf1 (ENSONIG00000016652) ENSONIG00000016655 ENSONIG00000042707 ENSONIG00000040838 ENSONIG00000038929 Nile tilapia MODERN SPECIES 20 tmem204 (ENSONIG00000020013) telo2 (ENSONIG00000020010) decr2 (ENSONIG00000020008) RDH13 (ENSONIG00000020005) ENSONIG00000020003 NLRC3 (ENSONIG00000020002) ENSONIG00000029102 WDR90 (ENSONIG00000019995) rhot2 (ENSONIG00000019988) h1-0 (ENSONIG00000037924) rhbdl1 (ENSONIG00000019987) zgc:112496 (ENSONIG00000019986) wdr24 (ENSONIG00000019984) anks3 (ENSONIG00000019979) zgc:112185 (ENSONIG00000019978) ENSONIG00000019975 #22 ENSONIG00000032038 lg8h7orf50 (ENSONIG00000034151) ENSONIG00000021208 ENSONIG00000034548 gnptg (ENSONIG00000019968) tsr3 (ENSONIG00000019966) pdpk1b (ENSONIG00000019961) kctd5 (ENSONIG00000040621) ube2i (ENSONIG00000036927) ENSONIG00000019956 ENSONIG00000019955 phkg2 (ENSONIG00000019951) RNF40 (ENSONIG00000019949) ENSONIG00000033141 znf668 (ENSONIG00000021207) Nile tilapia MODERN SPECIES 1 PANX3 (ENSONIG00000015775) pknox2 (ENSONIG00000015777) tmem218 (ENSONIG00000028914) ENSONIG00000015779 robo3 (ENSONIG00000015781) MSANTD2 (ENSONIG00000015786) esam (ENSONIG00000030571) fez1 (ENSONIG00000015790) cfap58 (ENSONIG00000015792) ENSONIG00000037006 ENSONIG00000036832 IGSF9B (ENSONIG00000015795) jam3b (ENSONIG00000015796) vps26bl (ENSONIG00000030388) ARHGAP32 (ENSONIG00000015803) ENSONIG00000037977 #22 crx (ENSONIG00000015806) kptn (ENSONIG00000015807) nova1 (ENSONIG00000015810) ENSONIG00000029570 capns1b (ENSONIG00000027340) zgc:153990 (ENSONIG00000015818) dlb (ENSONIG00000015819) ppp1r14aa (ENSONIG00000015821) ENSONIG00000015824 ENSONIG00000029399 MARK4 (ENSONIG00000015826) ckma (ENSONIG00000015836) nccrp1 (ENSONIG00000039616) slc8a2a (ENSONIG00000015841) hnrnpl (ENSONIG00000015848) Pomacentridae ANCESTRAL SPECIES 13 ENSGT00940000153801.a ENSGT00940000159641 ENSGT00940000154852.a ENSGT00530000066748 ENSGT00940000159861 ENSGT00940000157969 ENSGT00940000171912 ENSGT00940000160173 ENSGT00940000158109 ENSGT00810000125570 ENSGT00940000160651 ENSGT00530000064671 ENSGT00940000159396 ENSGT00940000156610 ENSGT00390000000306 ENSGT01100000263504.a.b.a.a #22 ENSGT00940000154307.A ENSGT00390000006068 ENSGT01100000263504.a.b.a.b.a.a ##35 ENSGT00510000049652 ENSGT00390000017838 ENSGT00510000048359 ENSGT00390000014665 ENSGT00940000155267 ENSGT00940000160374 ENSGT00550000075088.a.a ENSGT00940000167095.A ENSGT00940000166841 ENSGT00940000154323.a ENSGT00940000160435 ENSGT00390000002866.a Pomacentridae_A ANCESTRAL SPECIES 11 ENSGT00940000153801.a ENSGT00940000159641 ENSGT00940000154852.a ENSGT00530000066748 ENSGT00940000159861 ENSGT00940000157969 ENSGT00940000171912 ENSGT00940000160173 ENSGT00940000158109 ENSGT00810000125570 ENSGT00940000160651 ENSGT00530000064671 ENSGT00940000159396 ENSGT00940000156610 ENSGT00390000000306 ENSGT01100000263504.a.b.a.a #22 ENSGT00510000049652 ENSGT00390000017838 ENSGT00510000048359 ENSGT00390000014665 ENSGT00940000155267 ENSGT00940000160374 ENSGT00550000075088.a.a ENSGT00940000167095.A ENSGT00940000166841 ENSGT00940000154323.a ENSGT00940000160435 ENSGT00390000002866.a ENSGT00940000164729.a.b ENSGT00940000165156 ENSGT00940000168122 Amphiprion ANCESTRAL SPECIES 28 ENSGT00940000153801.a ENSGT00940000159641 ENSGT00940000154852.a ENSGT00530000066748 ENSGT00940000159861 ENSGT00940000157969 ENSGT00940000171912 ENSGT00940000160173 ENSGT00940000158109 ENSGT00810000125570 ENSGT00940000160651 ENSGT00530000064671 ENSGT00940000159396 ENSGT00940000156610 ENSGT00390000000306 ENSGT01100000263504.a.b.a.a #22 ENSGT00510000049652 ENSGT00940000154307.A ENSGT00390000006068 ENSGT00390000017838 ENSGT00510000048359 ENSGT00390000014665 ENSGT00940000155267 ENSGT00940000160374 ENSGT00550000075088.a.a ENSGT00940000167095.A ENSGT00940000166841 ENSGT00940000154323.a ENSGT00940000160435 ENSGT00390000002866.a ENSGT00940000164729.a.b Clown anemonefish MODERN SPECIES 1896 ENSAOCG00000003745 rhot2 (ENSAOCG00000003763) h1-0 (ENSAOCG00000003779) rhbdl1 (ENSAOCG00000003788) zgc:112496 (ENSAOCG00000003800) wdr24 (ENSAOCG00000003811) anks3 (ENSAOCG00000003823) zgc:112185 (ENSAOCG00000003828) ENSAOCG00000003833 #22 ENSAOCG00000003836 ENSAOCG00000003842 ENSAOCG00000003845 ENSAOCG00000003853 Bicolor damselfish MODERN SPECIES 516 ENSSPAG00000012042 ENSSPAG00000012027 im:7159173 (ENSSPAG00000012013) ENSSPAG00000011974 B3GAT1 (ENSSPAG00000011958) ENSSPAG00000011920 cfap58 (ENSSPAG00000011842) IGSF9B (ENSSPAG00000011794) jam3b (ENSSPAG00000011770) vps26bl (ENSSPAG00000011750) ARHGAP32 (ENSSPAG00000011581) h3f3c (ENSSPAG00000011556) #22 crx (ENSSPAG00000011548) kptn (ENSSPAG00000011502) Atherinomorphae DUPLICATION Atherinomorphae DUPLICATION Atherinomorphae ANCESTRAL SPECIES 10 ENSGT00940000153801.a ENSGT00940000159641 ENSGT00940000154852.a ENSGT00530000066748 ENSGT00940000159861 ENSGT00940000180121 ENSGT00940000157969 ENSGT00940000160173 ENSGT00940000158109 ENSGT00810000125570 ENSGT00940000160651 ENSGT00530000064671 ENSGT00940000159396 ENSGT00940000156610 ENSGT00390000000306 ENSGT01100000263504.a.b.a.a.hb.a #22 ENSGT00940000154307.A ENSGT00390000006068 ENSGT00390000017838 ENSGT00510000048359 ENSGT00390000014665 ENSGT00940000155267 ENSGT00940000160374 ENSGT00550000075088.a.a ENSGT00940000167095.A ENSGT00940000166841 ENSGT00940000154323.a ENSGT00940000160435 ENSGT00390000002866.a ENSGT00650000094874 ENSGT00940000164729.a.b Cyprinodontiformes ANCESTRAL SPECIES 13 ENSGT00940000159641 ENSGT00940000154852.a ENSGT00530000066748 ENSGT00940000159861 ENSGT00940000157969 ENSGT00940000160173 ENSGT00940000158109 ENSGT00810000125570 ENSGT00940000160651 ENSGT00530000064671 ENSGT00940000159396 ENSGT00940000156610 ENSGT00390000000306 ENSGT01100000263504.a.b.a.a.ib #22 ENSGT00510000049652 ENSGT01100000263504.a.b.a.a.hb.a #22 ENSGT01030000235280 ENSGT00940000154307.A ENSGT00390000006068 ENSGT00390000017838 ENSGT00510000048359 ENSGT00390000014665 ENSGT00940000155267 ENSGT00940000160374 ENSGT00550000075088.a.a ENSGT00940000167095.A ENSGT00940000166841 ENSGT00940000154323.a ENSGT00940000160435 ENSGT00390000002866.a ENSGT00650000094874 Aplocheiloidei ANCESTRAL SPECIES 4 ENSGT00440000033742.a.a ENSGT00940000153801.a ENSGT00940000159641 ENSGT00940000154852.a ENSGT00530000066748 ENSGT00940000159861 ENSGT00940000160173 ENSGT00940000158109 ENSGT00810000125570 ENSGT00940000160651 ENSGT00530000064671 ENSGT00940000159396 ENSGT00940000156610 ENSGT00390000000306 ENSGT00510000049652 ENSGT01100000263504.a.b.a.a.hb.a #22 ENSGT01030000235280 ENSGT00940000154307.A ENSGT00390000006068 ENSGT00390000017838 ENSGT00510000048359 ENSGT00390000014665 ENSGT00940000155267 ENSGT00940000160374 ENSGT00550000075088.a.a ENSGT00940000167095.A ENSGT00940000166841 ENSGT00940000154323.a ENSGT00940000160435 ENSGT00390000002866.a ENSGT00940000164729.a.b Mangrove rivulus MODERN SPECIES 43 RDH13 (ENSKMAG00000012818) SBK1 (ENSKMAG00000012791) ENSKMAG00000012765 NLRC3 (ENSKMAG00000012728) ENSKMAG00000012706 ENSKMAG00000012617 ENSKMAG00000012540 rhot2 (ENSKMAG00000012477) h1-0 (ENSKMAG00000012456) rhbdl1 (ENSKMAG00000012424) zgc:112496 (ENSKMAG00000012395) wdr24 (ENSKMAG00000012363) anks3 (ENSKMAG00000012345) zgc:112185 (ENSKMAG00000012333) ENSKMAG00000012319 ENSKMAG00000012299 #22 ENSKMAG00000012291 gnptg (ENSKMAG00000012272) tsr3 (ENSKMAG00000012259) pdpk1b (ENSKMAG00000012214) kctd5a (ENSKMAG00000012164) ube2ia (ENSKMAG00000012131) ENSKMAG00000012114 ENSKMAG00000012102 ENSKMAG00000012087 phkg2 (ENSKMAG00000012062) RNF40 (ENSKMAG00000012004) ENSKMAG00000011982 znf668 (ENSKMAG00000011974) ENSKMAG00000011942 zgc:91999 (ENSKMAG00000011918) Atherinomorphae ANCESTRAL SPECIES 10 ENSGT00960000186809 ENSGT00940000159664 ENSGT01090000260051.b.a.b ENSGT00940000157017.a.b.a ENSGT00940000156819.a.b ENSGT00390000005895 ENSGT00390000014852.a ENSGT00390000004691 ENSGT00940000153514.a.b ENSGT00390000013574 ENSGT00900000141125 ENSGT00940000162951 ENSGT00530000063718.a.a ENSGT00730000110939.b ENSGT00940000159360 ENSGT01100000263504.a.b.a.a.hb.b #22 ENSGT01100000263504.a.b.a.b.a.a ##35 ENSGT01100000263504.a.b.b.a.b ##35 ENSGT00510000049652 ENSGT01100000263504.a.a ##35 ENSGT00940000167259 ENSGT00940000163587.a.b.a.c.b ENSGT01100000263555.b ENSGT00390000007870 ENSGT00940000176223 ENSGT00390000018570.b.a ENSGT00940000167542 ENSGT00940000156486 ENSGT00940000153496.a.b.a ENSGT00940000154208.c.b ENSGT00940000158031.c Oryzias ANCESTRAL SPECIES 11 ENSGT00940000159641 ENSGT00940000154852.a ENSGT00530000066748 ENSGT00940000159861 ENSGT00940000180121 ENSGT00940000157969 ENSGT00940000179470 ENSGT00940000160173 ENSGT00940000158109 ENSGT00810000125570 ENSGT00940000160651 ENSGT00530000064671 ENSGT00940000159396 ENSGT00940000156610 ENSGT00390000000306 ENSGT01100000263504.a.b.a.a.hb.b #22 ENSGT00510000049652 ENSGT00940000154307.A ENSGT00390000017838 ENSGT00510000048359 ENSGT00390000014665 ENSGT00940000155267 ENSGT00940000160374 ENSGT00550000075088.a.a ENSGT00940000167095.A ENSGT00940000166841 ENSGT00940000154323.a ENSGT00940000160435 ENSGT00390000002866.a ENSGT00940000164729.a.b ENSGT00940000165156 Oryzias_b ANCESTRAL SPECIES 9 ENSGT00940000159641 ENSGT00940000154852.a ENSGT00530000066748 ENSGT00940000159861 ENSGT00940000180121 ENSGT00940000157969 ENSGT00940000179470 ENSGT00940000160173 ENSGT00940000158109 ENSGT00810000125570 ENSGT00940000160651 ENSGT00530000064671 ENSGT00940000159396 ENSGT00940000156610 ENSGT00390000000306 ENSGT01100000263504.a.b.a.a.hb.b #22 ENSGT00510000049652 ENSGT01100000263504.a.b.b.a.b ##35 ENSGT00940000154307.A ENSGT00390000017838 ENSGT00510000048359 ENSGT00390000014665 ENSGT00940000155267 ENSGT00940000160374 ENSGT00550000075088.a.a ENSGT00940000167095.A ENSGT00940000166841 ENSGT00940000154323.a ENSGT00940000160435 ENSGT00390000002866.a ENSGT00940000164729.a.b Javanese ricefish MODERN SPECIES 10 tmem204 (ENSOJAG00000018834) telo2 (ENSOJAG00000018852) RAB11FIP3 (ENSOJAG00000019308) decr2 (ENSOJAG00000019338) RDH13 (ENSOJAG00000019388) ENSOJAG00000019402 NLRC3 (ENSOJAG00000019423) ENSOJAG00000019601 rhot2 (ENSOJAG00000020001) h1-0 (ENSOJAG00000020261) rhbdl1 (ENSOJAG00000020270) zgc:112496 (ENSOJAG00000020300) wdr24 (ENSOJAG00000020315) anks3 (ENSOJAG00000020341) zgc:112185 (ENSOJAG00000020387) ENSOJAG00000020399 #22 UQCC4 (ENSOJAG00000020411) ENSOJAG00000020435 ENSOJAG00000020444 gnptg (ENSOJAG00000020475) tsr3 (ENSOJAG00000020510) pdpk1b (ENSOJAG00000020572) kctd5a (ENSOJAG00000021030) ube2ia (ENSOJAG00000021045) ENSOJAG00000021051 ENSOJAG00000021175 phkg2 (ENSOJAG00000021196) RNF40 (ENSOJAG00000021273) ENSOJAG00000021425 ENSOJAG00000021436 znf668 (ENSOJAG00000021443) Cyprinodontiformes ANCESTRAL SPECIES 13 ENSGT00390000004836 ENSGT00960000186809 ENSGT00940000159664 ENSGT01090000260051.b.a.b ENSGT00940000156819.a.b ENSGT00390000005895 ENSGT00390000014852.a ENSGT00390000004691 ENSGT00940000153514.a.b ENSGT00390000013574 ENSGT00900000141125 ENSGT00940000162951 ENSGT00530000063718.a.a ENSGT00730000110939.b ENSGT00940000159360 ENSGT01100000263504.a.b.a.a.hb.b #22 ENSGT01100000263504.a.b.a.b.a.a ##35 ENSGT01100000263504.a.b.b.a.b ##35 ENSGT01100000263504.a.a ##35 ENSGT00940000167259 ENSGT00940000163587.a.b.a.c.b ENSGT01100000263555.b ENSGT00390000007870 ENSGT00940000176223 ENSGT00390000018570.b.a ENSGT00940000167542 ENSGT00940000156486 ENSGT00940000153496.a.b.a ENSGT00940000154208.c.b ENSGT00940000158031.c ENSGT00940000163867 Aplocheiloidei ANCESTRAL SPECIES 182 ENSGT00940000154313.c.a ENSGT01100000263504.a.b.a.b.a.b ##35 ENSGT00940000156937.a.a ENSGT01100000263504.a.b.a.a.hb.b #22 ENSGT00940000164977.a ENSGT00390000002548 ENSGT00940000155573.g.b ENSGT00940000155478.hb.b ENSGT00450000040324.a.a.a ENSGT00940000164418.a.b ENSGT00950000182985.a.b.a ENSGT01030000234613.b.b.h ENSGT00940000159555.v.b ENSGT00950000182772.A.a.a.b.r.a Mangrove rivulus MODERN SPECIES 110 ZBTB16 (ENSKMAG00000013166) ncam1b (ENSKMAG00000013322) cadm1b (ENSKMAG00000013545) ENSKMAG00000013621 IGSF9B (ENSKMAG00000013697) JAM3 (ENSKMAG00000013821) vps26b (ENSKMAG00000013850) thyn1 (ENSKMAG00000013897) acad8 (ENSKMAG00000013933) ENSKMAG00000013988 ENSKMAG00000014024 lim2.3 (ENSKMAG00000014049) hspa8b (ENSKMAG00000014084) ENSKMAG00000014134 ENSKMAG00000014151 h3f3c (ENSKMAG00000014172) #22 crx (ENSKMAG00000014191) kptn (ENSKMAG00000014205) nova1 (ENSKMAG00000014225) zgc:153990 (ENSKMAG00000014235) capns1b (ENSKMAG00000014268) kcnk9 (ENSKMAG00000014301) ENSKMAG00000014312 ENSKMAG00000014343 FAM135B (ENSKMAG00000014389) ENSKMAG00000014430 FAM171A2 (ENSKMAG00000014446) ENSKMAG00000014465 Turquoise killifish MODERN SPECIES 1621 UNK (ENSNFUG00015024481) H3F3B.1 (ENSNFUG00015024472) #22 ENSNFUG00015024467 Nfu_g_1_023008 (ENSNFUG00015024463) itgb4 (ENSNFUG00015023956) SAP30BP (ENSNFUG00015023832) MRPL38 (ENSNFUG00015023824) ENSNFUG00015023813 ENSNFUG00015023807 ENSNFUG00015022861 ENSNFUG00015022731 Nfu_g_1_022781 (ENSNFUG00015022728) CABZ01073118.1 (ENSNFUG00015022288) DAGLB (ENSNFUG00015022225) ENSNFUG00015022219 CDR2L (ENSNFUG00015022216) ENSNFUG00015022212 Atherinomorphae ANCESTRAL SPECIES 15 ENSGT00940000162075 ENSGT00940000157522 ENSGT00940000156342.d ENSGT00940000161398.e ENSGT00940000164578.a.a ENSGT00390000004360.a.a ENSGT00950000183115.a.a.a ENSGT00950000183136.b.b.d ENSGT00940000160281 ENSGT00940000161057 ENSGT00940000154866.A ENSGT00940000157514.a ENSGT00940000160500 ENSGT01090000260005.a.b.a.b.b.i ENSGT00390000017267 ENSGT01100000263504.a.b.a.a.ib #22 ENSGT00940000164977.b.a.b ENSGT00940000164977.b.a.a ENSGT00550000074807.c ENSGT00940000153792.A ENSGT00940000156265 ENSGT00940000160533 ENSGT00530000064222.a ENSGT00940000158965 ENSGT00940000160957 ENSGT00940000165302 ENSGT00940000160692 ENSGT01030000234592.A.b.a ENSGT00390000017365.b ENSGT01030000236106 ENSGT00940000159302 Oryzias ANCESTRAL SPECIES 8 ENSGT00390000015165 ENSGT00940000161203 ENSGT00940000155076.b.a.b ENSGT01030000234927 ENSGT00940000159315 ENSGT00390000003413 ENSGT00390000002625 ENSGT00950000183115.a.a.a ENSGT00940000160281 ENSGT00940000161057.j ENSGT00940000154866.A ENSGT00940000157514.a ENSGT00940000160500 ENSGT01090000260005.a.b.a.b.b.i ENSGT00390000017267 ENSGT01100000263504.a.b.a.a.ib #22 ENSGT00940000164977.b.a.b ENSGT01100000263504.a.b.a.b.a.a ##35 ENSGT00940000154313.c.a ENSGT01100000263504.a.b.b.a.b ##35 ENSGT00940000164977.b.a.a ENSGT00550000074807.c ENSGT00940000153792.A ENSGT00940000156265 ENSGT00940000160533 ENSGT00530000064222.a ENSGT00940000158965 ENSGT00940000160957 ENSGT00940000165302 ENSGT00940000160692 ENSGT01030000234592.A.b.a Oryzias_a ANCESTRAL SPECIES 70 ENSGT00940000165707 ENSGT00940000166369 ENSGT00940000158679 ENSGT00940000153972.B ENSGT00940000158793 ENSGT00390000016247 ENSGT00940000159193 ENSGT00940000155457.a.a.d ENSGT00390000013593 ENSGT00940000157231.a.a ENSGT00390000017627.b ENSGT00530000063534.b ENSGT00940000155900.i ENSGT00940000156937.a.a ENSGT00940000154313.c.a ENSGT01100000263504.a.b.a.a.ib #22 ENSGT00940000164977.b.a.b ENSGT00390000002548 ENSGT00940000155573.g.b ENSGT00940000155478.hb.b ENSGT00450000040324.a.a.a ENSGT00940000164418.a.b ENSGT00950000182985.a.b.a ENSGT01030000234613.b.b.h ENSGT00940000159555.v.b ENSGT00950000182772.A.a.a.b.r.a ENSGT00940000161313 ENSGT00940000158344.a.b ENSGT01030000234642.a.b.b.d.b.c.b ENSGT00940000162120.f.a ENSGT00950000183079.A.b.c.b Japanese Medaka HdrR MODERN SPECIES 5 pknox2 (ENSORLG00000027352) tmem218 (ENSORLG00000025587) ENSORLG00000027188 ENSORLG00000026532 robo3 (ENSORLG00000026278) MSANTD2 (ENSORLG00000028888) esama (ENSORLG00000029754) fez1 (ENSORLG00000018583) cfap58 (ENSORLG00000018596) ENSORLG00000000285 ENSORLG00000021801 ENSORLG00000023338 jam3b (ENSORLG00000027029) ARHGAP32 (ENSORLG00000000312) ENSORLG00000028706 h3f3c (ENSORLG00000026243) #22 ENSORLG00000000324 kptn (ENSORLG00000000337) nova1 (ENSORLG00000000350) capns1b (ENSORLG00000000369) zgc:153990 (ENSORLG00000023232) dlb (ENSORLG00000000378) ENSORLG00000000382 ppp1r14aa (ENSORLG00000000395) ENSORLG00000023651 ENSORLG00000025181 MARK4 (ENSORLG00000000445) ckma (ENSORLG00000000449) nccrp1 (ENSORLG00000000459) slc8a2a (ENSORLG00000000474) hnrnpl (ENSORLG00000000486) Oryzias_b ANCESTRAL SPECIES 14 ENSGT00390000015165 ENSGT00940000161203 ENSGT00940000155076.b.a.b ENSGT01030000234927 ENSGT00940000159315 ENSGT00390000003413 ENSGT00390000002625 ENSGT00950000183115.a.a.a ENSGT00940000160281 ENSGT00940000161057.j ENSGT00940000154866.A ENSGT00940000157514.a ENSGT00940000160500 ENSGT01090000260005.a.b.a.b.b.i ENSGT00390000017267 ENSGT01100000263504.a.b.a.a.ib #22 ENSGT00940000164977.b.a.a ENSGT00550000074807.c ENSGT00940000153792.A ENSGT00940000156265 ENSGT00940000160533 ENSGT00530000064222.a ENSGT00940000158965 ENSGT00940000160957 ENSGT00940000165302 ENSGT00940000160692 ENSGT01030000234592.A.b.a ENSGT00730000111885.f ENSGT00390000016324 ENSGT00940000156948.j ENSGT00940000156504.i.a Indian medaka MODERN SPECIES 12 vps53 (ENSOMEG00000017681) zgc:172282 (ENSOMEG00000017727) zgc:162730 (ENSOMEG00000017752) ENSOMEG00000017764 SGSM2 (ENSOMEG00000000457) ift20 (ENSOMEG00000017976) lyrm9 (ENSOMEG00000017962) ITM2C (ENSOMEG00000018006) ENSOMEG00000018030 meis3 (ENSOMEG00000018062) ENSOMEG00000018120 sirt2 (ENSOMEG00000018164) dmac2 (ENSOMEG00000018198) GJD2 (ENSOMEG00000018221) nop53 (ENSOMEG00000018244) ENSOMEG00000018259 #22 ENSOMEG00000018292 #35 ENSOMEG00000018323 psma6l (ENSOMEG00000018353) sars2 (ENSOMEG00000018375) si:dkey-260j18.2 (ENSOMEG00000018383) slc5a2 (ENSOMEG00000018418) fbxo46 (ENSOMEG00000018443) coq8b (ENSOMEG00000018475) numbl (ENSOMEG00000018554) ENSOMEG00000018659 dpf1 (ENSOMEG00000000482) ENSOMEG00000018767 ENSOMEG00000018788 pxylp1 (ENSOMEG00000018825) epha4a (ENSOMEG00000018872) Cyprinodontiformes ANCESTRAL SPECIES 13 ENSGT00440000033742.a.a ENSGT00940000153801.a ENSGT00940000159641 ENSGT00940000154852.a ENSGT00530000066748 ENSGT00940000159861 ENSGT00940000157969 ENSGT00940000160173 ENSGT00940000158109 ENSGT00810000125570 ENSGT00940000160651 ENSGT00530000064671 ENSGT00940000159396 ENSGT00940000156610 ENSGT00390000000306 ENSGT01100000263504.a.b.a.a.ib #22 ENSGT00510000049652 ENSGT01100000263504.a.b.a.a.hb.a #22 ENSGT01030000235280 ENSGT00940000154307.A ENSGT00390000006068 ENSGT00390000017838 ENSGT00510000048359 ENSGT00390000014665 ENSGT00940000155267 ENSGT00940000160374 ENSGT00550000075088.a.a ENSGT00940000167095.A ENSGT00940000166841 ENSGT00940000154323.a ENSGT00940000160435 Cyprinodontoidei ANCESTRAL SPECIES 17 ENSGT00440000033742.a.a ENSGT00940000153801.a ENSGT00940000159641 ENSGT00940000154852.a ENSGT00530000066748 ENSGT00940000159861 ENSGT00940000157969 ENSGT00940000160173 ENSGT00940000158109 ENSGT00810000125570 ENSGT00940000160651 ENSGT00530000064671 ENSGT00940000159396 ENSGT00940000156610 ENSGT00390000000306 ENSGT01100000263504.a.b.a.a.ib #22 ENSGT00510000049652 ENSGT00940000154307.A ENSGT00390000006068 ENSGT00390000017838 ENSGT00510000048359 ENSGT00390000014665 ENSGT00940000155267 ENSGT00940000160374 ENSGT00550000075088.a.a ENSGT00940000167095.A ENSGT00940000154323.a ENSGT00940000160435 ENSGT00390000002866.a ENSGT00650000094874 ENSGT00940000164729.a.b NAME_4 ANCESTRAL SPECIES 15 ENSGT00440000033742.a.a ENSGT00940000153801.a ENSGT00940000159641 ENSGT00940000154852.a ENSGT00530000066748 ENSGT00940000159861 ENSGT00940000157969 ENSGT00940000160173 ENSGT00940000158109 ENSGT00810000125570 ENSGT00940000160651 ENSGT00530000064671 ENSGT00940000159396 ENSGT00940000156610 ENSGT00390000000306 ENSGT01100000263504.a.b.a.a.ib #22 ENSGT00510000049652 ENSGT00940000154307.A ENSGT00390000006068 ENSGT00390000017838 ENSGT00510000048359 ENSGT00390000014665 ENSGT00940000155267 ENSGT00940000160374 ENSGT00550000075088.a.a ENSGT00940000167095.A ENSGT00940000154323.a ENSGT00940000160435 ENSGT00390000002866.a ENSGT00940000164729.a.b ENSGT00940000165156 Sheepshead minnow MODERN SPECIES 225 decr2 (ENSCVAG00000001681) RDH13 (ENSCVAG00000001685) SBK1 (ENSCVAG00000001689) ENSCVAG00000001691 ENSCVAG00000001694 NLRC3 (ENSCVAG00000001704) ENSCVAG00000001708 WDR90 (ENSCVAG00000001759) rhot2 (ENSCVAG00000001772) h1-0 (ENSCVAG00000001782) rhbdl1 (ENSCVAG00000001790) zgc:112496 (ENSCVAG00000001798) wdr24 (ENSCVAG00000001805) anks3 (ENSCVAG00000001816) zgc:112185 (ENSCVAG00000001820) ENSCVAG00000001823 #22 ENSCVAG00000001826 ENSCVAG00000001831 ENSCVAG00000001834 ENSCVAG00000001839 gnptg (ENSCVAG00000001847) Poeciliinae ANCESTRAL SPECIES 10 ENSGT00440000033742.a.a ENSGT00940000153801.a ENSGT00940000159641 ENSGT00940000154852.a ENSGT00530000066748 ENSGT00940000159861 ENSGT00940000157969 ENSGT00940000160173 ENSGT00940000158109 ENSGT00810000125570 ENSGT00940000160651 ENSGT00530000064671 ENSGT00940000159396 ENSGT00940000156610 ENSGT00390000000306 ENSGT01100000263504.a.b.a.a.ib #22 ENSGT00510000049652 ENSGT00940000154307.A ENSGT00390000006068 ENSGT00390000017838 ENSGT00510000048359 ENSGT00390000014665 ENSGT00940000155267 ENSGT00940000160374 ENSGT00550000075088.a.a ENSGT00940000167095.A ENSGT00940000154323.a ENSGT00940000160435 ENSGT00390000002866.a ENSGT00650000094874 ENSGT00940000164729.a.b Poecilia ANCESTRAL SPECIES 22 ENSGT00440000033742.a.a ENSGT00940000153801.a ENSGT00940000159641 ENSGT00940000154852.a ENSGT00530000066748 ENSGT00940000159861 ENSGT00940000157969 ENSGT00940000160173 ENSGT00940000158109 ENSGT00810000125570 ENSGT00940000160651 ENSGT00530000064671 ENSGT00940000159396 ENSGT00940000156610 ENSGT00390000000306 ENSGT01100000263504.a.b.a.a.ib #22 ENSGT00510000049652 ENSGT00940000154307.A ENSGT00390000006068 ENSGT00390000017838 ENSGT00510000048359 ENSGT00390000014665.c ENSGT00940000155267 ENSGT00940000160374 ENSGT00550000075088.a.a ENSGT00940000167095.A ENSGT00940000154323.a ENSGT00940000160435 ENSGT00390000002866.a ENSGT00940000164729.a.b.b ENSGT00650000094874 Guppy MODERN SPECIES 449 decr2 (ENSPREG00000018482) RDH13 (ENSPREG00000018465) SBK1 (ENSPREG00000018457) ENSPREG00000018441 ENSPREG00000018427 NLRC3 (ENSPREG00000018396) ENSPREG00000018369 ENSPREG00000018352 rhot2 (ENSPREG00000018095) h1-0 (ENSPREG00000018024) rhbdl1 (ENSPREG00000018012) zgc:112496 (ENSPREG00000018000) wdr24 (ENSPREG00000017977) ENSPREG00000017970 zgc:112185 (ENSPREG00000017958) ENSPREG00000017943 #22 UQCC4 (ENSPREG00000017939) ENSPREG00000017925 ENSPREG00000017912 C7orf50 (ENSPREG00000017902) gnptg (ENSPREG00000017858) tsr3 (ENSPREG00000017832) pdpk1b (ENSPREG00000017813) kctd5a (ENSPREG00000017801) ube2ia (ENSPREG00000017779) ENSPREG00000017751 phkg2 (ENSPREG00000017698) RNF40 (ENSPREG00000017663) ENSPREG00000017650 ENSPREG00000017637 znf668 (ENSPREG00000017631) NAME_6 ANCESTRAL SPECIES 48 ENSGT01010000222313.A.b.b.b.b ENSGT00940000174362.A ENSGT00940000161398.e ENSGT00940000164578.a.a ENSGT01100000263473.a.b.h.b.d ENSGT00390000004360.a.a ENSGT00950000183115.a.a.a ENSGT00950000183136.b.b.d ENSGT00940000160281 ENSGT00940000161057 ENSGT00940000154866.A ENSGT00940000157514.a ENSGT00940000160500 ENSGT01090000260005.a.b.a.b.b.i ENSGT00390000017267 ENSGT01100000263504.a.b.a.a.ib #22 ENSGT01100000263504.a.b.a.b.a.a ##35 ENSGT01100000263504.a.b.b.a.b ##35 ENSGT01100000263504.a.a ##35 ENSGT00940000164977.b.a.b ENSGT00550000074807.c ENSGT00940000153792.A ENSGT00940000156265 ENSGT00940000160533 ENSGT00530000064222.a ENSGT00940000158965 ENSGT00940000160957 ENSGT00940000165302 ENSGT00940000160692 ENSGT01030000234592.A.b.a ENSGT00390000017365.b.`c.f Amazon molly DUPLICATION Amazon molly MODERN SPECIES 707 ENSPFOG00000004126 her13 (ENSPFOG00000004031) her8.2 (ENSPFOG00000004012) ENSPFOG00000003993 ENSPFOG00000003922 ITM2C (ENSPFOG00000003845) lpar5b (ENSPFOG00000020324) ENSPFOG00000003563 meis3 (ENSPFOG00000003353) ENSPFOG00000003325 sirt2 (ENSPFOG00000003110) dmac2 (ENSPFOG00000003055) GJD2 (ENSPFOG00000020323) nop53 (ENSPFOG00000002839) ENSPFOG00000002790 #22 ENSPFOG00000002772 #22 ENSPFOG00000002767 ##35 ENSPFOG00000002731 psma6l (ENSPFOG00000002628) ENSPFOG00000002620 sars2 (ENSPFOG00000002338) si:dkey-260j18.2 (ENSPFOG00000002301) slc5a2 (ENSPFOG00000002096) fbxo46 (ENSPFOG00000002063) coq8b (ENSPFOG00000001942) coq8b (ENSPFOG00000001709) Amazon molly MODERN SPECIES 707 ENSPFOG00000004126 her13 (ENSPFOG00000004031) her8.2 (ENSPFOG00000004012) ENSPFOG00000003993 ENSPFOG00000003922 ITM2C (ENSPFOG00000003845) lpar5b (ENSPFOG00000020324) ENSPFOG00000003563 meis3 (ENSPFOG00000003353) ENSPFOG00000003325 sirt2 (ENSPFOG00000003110) dmac2 (ENSPFOG00000003055) GJD2 (ENSPFOG00000020323) nop53 (ENSPFOG00000002839) ENSPFOG00000002790 #22 ENSPFOG00000002772 #22 ENSPFOG00000002767 ##35 ENSPFOG00000002731 psma6l (ENSPFOG00000002628) ENSPFOG00000002620 sars2 (ENSPFOG00000002338) si:dkey-260j18.2 (ENSPFOG00000002301) slc5a2 (ENSPFOG00000002096) fbxo46 (ENSPFOG00000002063) coq8b (ENSPFOG00000001942) coq8b (ENSPFOG00000001709) Percomorphaceae_C ANCESTRAL SPECIES 14 ENSGT00940000157017.a.b.a ENSGT01090000260051.b.a.b ENSGT00390000005895 ENSGT00390000014852.a ENSGT00390000004691 ENSGT00940000153514.a.b ENSGT00940000178199 ENSGT00390000013574 ENSGT00900000141125 ENSGT00940000162951 ENSGT00530000063718.a.a ENSGT00730000110939.b ENSGT00940000159360 ENSGT01100000263504.a.a ##35 ENSGT00510000049652 ENSGT01100000263504.a.b.a.a #22 ENSGT00940000167259 ENSGT00940000163587.a.b.a.c.b ENSGT01100000263555.b ENSGT00390000007870 ENSGT00940000176223 ENSGT00390000018570.b.a ENSGT00940000167542 ENSGT00940000156486 ENSGT00940000153496.a.b.a ENSGT00940000154208.c.b ENSGT00940000158031.c ENSGT00940000163867 ENSGT00940000164726.b ENSGT00940000164900 ENSGT00950000182977.B.b.b.a Percomorphaceae_D ANCESTRAL SPECIES 13 ENSGT00940000156819.a.b ENSGT00940000157017.a.b.a ENSGT01090000260051.b.a.b ENSGT00390000005895 ENSGT00390000014852.a ENSGT00390000004691 ENSGT00940000153514.a.b ENSGT00390000013574 ENSGT00900000141125 ENSGT00940000162951 ENSGT00530000063718.a.a ENSGT00730000110939.b ENSGT00940000159360 ENSGT01100000263504.a.a ##35 ENSGT00510000049652 ENSGT01100000263504.a.b.a.a #22 ENSGT00940000167259 ENSGT00940000163587.a.b.a.c.b ENSGT01100000263555.b ENSGT00390000007870 ENSGT00940000176223 ENSGT00390000018570.b.a ENSGT00940000167542 ENSGT00940000156486 ENSGT00940000153496.a.b.a ENSGT00940000154208.c.b ENSGT00940000158031.c ENSGT00940000163867 ENSGT00940000164726.b ENSGT00940000164900 ENSGT00950000182977.B.b.b.a Carangaria ANCESTRAL SPECIES 13 ENSGT01090000260051.b.a.b ENSGT00940000157017.a.b.a ENSGT00940000156819.a.b ENSGT00390000005895 ENSGT00390000014852.a ENSGT00390000004691 ENSGT00940000153514.a.b ENSGT00390000013574 ENSGT00900000141125 ENSGT00940000162951 ENSGT00530000063718.a.a ENSGT00730000110939.b ENSGT00940000159360 ENSGT01100000263504.a.a ##35 ENSGT00510000049652 ENSGT01100000263504.a.b.a.a #22 ENSGT00940000167259 ENSGT00940000163587.a.b.a.c.b ENSGT01100000263555.b ENSGT00390000007870 ENSGT00940000176223 ENSGT00390000018570.b.a ENSGT00940000167542 ENSGT00940000156486 ENSGT00940000153496.a.b.a ENSGT00940000154208.c.b ENSGT00940000160624 ENSGT00940000158031.c ENSGT00940000163867 ENSGT00940000164726.b ENSGT00940000164900 Pleuronectoidei ANCESTRAL SPECIES 6 ENSGT00440000033742.a.a ENSGT00940000153801.a ENSGT00940000159641 ENSGT00940000154852.a ENSGT00530000066748 ENSGT00940000159861 ENSGT00940000157969 ENSGT00940000160173 ENSGT00940000158109 ENSGT00810000125570 ENSGT00940000160651 ENSGT00530000064671 ENSGT00940000159396 ENSGT00940000156610 ENSGT00390000000306 ENSGT01100000263504.a.b.a.a #22 ENSGT00510000049652 ENSGT00940000154307.A ENSGT00390000006068 ENSGT00390000017838 ENSGT00510000048359 ENSGT00390000014665 ENSGT00940000155267 ENSGT00940000160374 ENSGT00550000075088.a.a ENSGT00940000167095.A ENSGT00940000166841 ENSGT00940000154323.a ENSGT00940000160435 ENSGT00390000002866.a ENSGT00940000164729.a.b Tongue sole MODERN SPECIES 18 decr2 (ENSCSEG00000011749) RDH13 (ENSCSEG00000011773) SBK1 (ENSCSEG00000011781) ENSCSEG00000011792 NLRC3 (ENSCSEG00000011810) GCGR (ENSCSEG00000011857) WDR90 (ENSCSEG00000011892) rhot2 (ENSCSEG00000011917) h1-0 (ENSCSEG00000011984) rhbdl1 (ENSCSEG00000011999) zgc:112496 (ENSCSEG00000012019) wdr24 (ENSCSEG00000012040) anks3 (ENSCSEG00000012075) zgc:112185 (ENSCSEG00000012091) ENSCSEG00000012098 ENSCSEG00000012103 #22 ENSCSEG00000012112 ENSCSEG00000012131 gnptg (ENSCSEG00000012145) tsr3 (ENSCSEG00000012153) pdpk1b (ENSCSEG00000012164) kctd5a (ENSCSEG00000012252) ube2ia (ENSCSEG00000012272) ENSCSEG00000012294 ENSCSEG00000012308 ENSCSEG00000012337 phkg2 (ENSCSEG00000012354) ccdc189 (ENSCSEG00000012372) RNF40 (ENSCSEG00000012378) ENSCSEG00000012389 znf668 (ENSCSEG00000012396) Turbot DUPLICATION Turbot MODERN SPECIES 15 MRPS22 (ENSSMAG00000020714) PIK3CB (ENSSMAG00000000112) ENSSMAG00000000129 ENSSMAG00000029620 ENSSMAG00000000161 ENSSMAG00000000166 ENSSMAG00000000194 ENSSMAG00000000173 ENSSMAG00000036287 ENSSMAG00000024997 meis3 (ENSSMAG00000000184) sirt2 (ENSSMAG00000000201) dmac2 (ENSSMAG00000000205) ENSSMAG00000000207 nop53 (ENSSMAG00000000212) ENSSMAG00000021956 #22 ENSSMAG00000000215 ##35 ENSSMAG00000000220 ENSSMAG00000000225 ENSSMAG00000000231 sars2 (ENSSMAG00000000240) si:dkey-260j18.2 (ENSSMAG00000028613) slc5a2 (ENSSMAG00000000249) fbxo46 (ENSSMAG00000027324) coq8b (ENSSMAG00000000271) numbl (ENSSMAG00000000283) ENSSMAG00000000311 dpf1 (ENSSMAG00000000322) ENSSMAG00000000333 ENSSMAG00000026129 ENSSMAG00000000345 Turbot MODERN SPECIES 9 rab11fip3 (ENSSMAG00000013454) decr2 (ENSSMAG00000013422) ENSSMAG00000013406 ENSSMAG00000013904 ENSSMAG00000013377 ENSSMAG00000013184 ENSSMAG00000013140 WDR90 (ENSSMAG00000013121) rhot2 (ENSSMAG00000013030) h1-0 (ENSSMAG00000013086) rhbdl1 (ENSSMAG00000013007) zgc:112496 (ENSSMAG00000012995) wdr24 (ENSSMAG00000012953) anks3 (ENSSMAG00000012934) zgc:112185 (ENSSMAG00000012926) ENSSMAG00000012681 #22 ENSSMAG00000028838 ENSSMAG00000012670 ENSSMAG00000029545 ENSSMAG00000012666 gnptg (ENSSMAG00000012637) ENSSMAG00000012626 pdpk1b (ENSSMAG00000012584) ENSSMAG00000012558 ENSSMAG00000012548 ENSSMAG00000026374 ENSSMAG00000012514 ENSSMAG00000028015 ENSSMAG00000037236 ENSSMAG00000012480 ENSSMAG00000012384 Turbot MODERN SPECIES 9 ENSSMAG00000004714 ENSSMAG00000004266 ENSSMAG00000004244 ENSSMAG00000004236 ogfod3 (ENSSMAG00000004219) HEXD (ENSSMAG00000004156) CYBC1 (ENSSMAG00000004168) NARF (ENSSMAG00000004146) ENSSMAG00000004125 ENSSMAG00000027457 mrpl38 (ENSSMAG00000004111) ENSSMAG00000004084 wbp2 (ENSSMAG00000004060) UNC13D (ENSSMAG00000003895) UNK (ENSSMAG00000003871) ENSSMAG00000029598 #22 ENSSMAG00000003851 zgc:194990 (ENSSMAG00000003804) ITGB4 (ENSSMAG00000003701) sap30bp (ENSSMAG00000003669) ENSSMAG00000003659 ENSSMAG00000003650 ENSSMAG00000003640 ENSSMAG00000003614 ENSSMAG00000003529 tob1b (ENSSMAG00000003500) ENSSMAG00000003480 ENSSMAG00000003304 ENSSMAG00000003278 ENSSMAG00000003267 ENSSMAG00000003259 Anabantaria ANCESTRAL SPECIES 18 ENSGT00390000004836 ENSGT00940000159664 ENSGT00940000156819.a.b ENSGT00940000157017.a.b.a ENSGT01090000260051.b.a.b ENSGT00390000005895 ENSGT00390000014852.a ENSGT00390000004691 ENSGT00940000153514.a.b ENSGT00390000013574 ENSGT00900000141125 ENSGT00940000162951 ENSGT00530000063718.a.a ENSGT00730000110939.b ENSGT00940000159360 ENSGT01100000263504.a.b.a.a #22 ENSGT01030000235280 ENSGT01100000263504.a.b.b.a.b ##35 ENSGT00940000167259 ENSGT00940000163587.a.b.a.c.b ENSGT01100000263555.b ENSGT00390000007870 ENSGT00940000176223 ENSGT00390000018570.b.a ENSGT00940000167542 ENSGT00940000156486 ENSGT00940000153496.a.b.a ENSGT00940000154208.c.b ENSGT00940000158031.c ENSGT00940000163867 ENSGT00940000164726.b Zig-zag eel MODERN SPECIES 4 RBP2 (ENSMAMG00000012240) MRPS22 (ENSMAMG00000012264) ENSMAMG00000012296 ENSMAMG00000012347 ENSMAMG00000012374 ENSMAMG00000027547 ENSMAMG00000012469 ENSMAMG00000012502 ENSMAMG00000028330 meis3 (ENSMAMG00000012541) ENSMAMG00000026554 sirt2 (ENSMAMG00000012576) dmac2 (ENSMAMG00000012635) ENSMAMG00000012644 nop53 (ENSMAMG00000012652) ENSMAMG00000027640 #22 ENSMAMG00000012703 ENSMAMG00000012714 ENSMAMG00000012743 sars2 (ENSMAMG00000012860) si:dkey-260j18.2 (ENSMAMG00000025696) slc5a2 (ENSMAMG00000012889) fbxo46 (ENSMAMG00000012930) ENSMAMG00000012936 dpf1 (ENSMAMG00000012961) ENSMAMG00000012995 numbl (ENSMAMG00000013035) ENSMAMG00000013155 ENSMAMG00000013139 ENSMAMG00000013187 ENSMAMG00000013166 Anabantoidei ANCESTRAL SPECIES 10 ENSGT00940000161625.n ENSGT00390000004836 ENSGT00940000159664 ENSGT00940000156819.a.b ENSGT00940000157017.a.b.a ENSGT00390000005895 ENSGT00390000014852.a ENSGT00390000004691 ENSGT00940000153514.a.b ENSGT00390000013574 ENSGT00900000141125 ENSGT00940000162951 ENSGT00530000063718.a.a ENSGT00730000110939.b ENSGT00940000159360 ENSGT01100000263504.a.b.a.a #22 ENSGT01030000235280 ENSGT01100000263504.a.b.b.a.b ##35 ENSGT00940000167259 ENSGT00940000163587.a.b.a.c.b ENSGT01100000263555.b ENSGT00390000007870 ENSGT00940000176223 ENSGT00390000018570.b.a ENSGT00940000167542 ENSGT00940000156486 ENSGT00940000153496.a.b.a ENSGT00940000154208.c.b ENSGT00940000158031.c ENSGT00940000163867 ENSGT00940000164726.b Climbing perch MODERN SPECIES 10 ENSATEG00000027071 ENSATEG00000025267 ENSATEG00000003819 ENSATEG00000003967 UTS2R (ENSATEG00000003974) ogfod3 (ENSATEG00000003982) HEXD (ENSATEG00000004036) CYBC1 (ENSATEG00000004081) NARF (ENSATEG00000004092) ENSATEG00000004098 mrpl38 (ENSATEG00000004146) ENSATEG00000004155 wbp2 (ENSATEG00000004186) UNC13D (ENSATEG00000004200) UNK (ENSATEG00000004212) ENSATEG00000004222 #22 ENSATEG00000004239 zgc:194990 (ENSATEG00000004306) ITGB4 (ENSATEG00000004350) sap30bp (ENSATEG00000005071) ENSATEG00000005077 ENSATEG00000005111 ENSATEG00000005139 ENSATEG00000005157 ENSATEG00000005171 tob1b (ENSATEG00000005289) ENSATEG00000005297 ENSATEG00000005315 sox9a (ENSATEG00000005539) ENSATEG00000005578 ENSATEG00000005704 Siamese fighting fish MODERN SPECIES 9 decr2 (ENSBSLG00000020452) RDH13 (ENSBSLG00000020442) ENSBSLG00000019908 ENSBSLG00000019819 ENSBSLG00000019785 NLRC3 (ENSBSLG00000019444) ENSBSLG00000019284 WDR90 (ENSBSLG00000018831) rhot2 (ENSBSLG00000018386) h1-0 (ENSBSLG00000018365) rhbdl1 (ENSBSLG00000018340) zgc:112496 (ENSBSLG00000018324) wdr24 (ENSBSLG00000018287) anks3 (ENSBSLG00000018216) zgc:112185 (ENSBSLG00000018178) ENSBSLG00000018064 #22 ENSBSLG00000018059 ENSBSLG00000018051 ENSBSLG00000018046 gnptg (ENSBSLG00000018036) tsr3 (ENSBSLG00000018025) pdpk1b (ENSBSLG00000017733) kctd5a (ENSBSLG00000017643) ube2ia (ENSBSLG00000017621) ENSBSLG00000017612 ENSBSLG00000017544 ENSBSLG00000017533 phkg2 (ENSBSLG00000017380) RNF40 (ENSBSLG00000016918) ENSBSLG00000016876 znf668 (ENSBSLG00000016833) Eupercaria ANCESTRAL SPECIES ENSGT01100000263504.a.b.a.a #22 Eupecaria_A ANCESTRAL SPECIES ENSGT01100000263504.a.b.a.a #22 Eupecaria_B ANCESTRAL SPECIES ENSGT01100000263504.a.b.a.a #22 Eupecaria_C ANCESTRAL SPECIES ENSGT01100000263504.a.b.a.a #22 Gilthead seabream MODERN SPECIES 12 SPATA20 (ENSSAUG00010023452) CACNA1G (ENSSAUG00010020863) ENSSAUG00010020830 ENSSAUG00010020829 ogfod3 (ENSSAUG00010020826) hexdc (ENSSAUG00010020789) cybc1 (ENSSAUG00010020782) narf (ENSSAUG00010020747) FDXR (ENSSAUG00010020362) mrpl38 (ENSSAUG00010020343) mrpl38 (ENSSAUG00010020337) ENSSAUG00010020336 wbp2 (ENSSAUG00010020335) ENSSAUG00010020331 unk (ENSSAUG00010020204) ENSSAUG00010020201 #22 ENSSAUG00010020200 zgc:194990 (ENSSAUG00010020198) itgb4 (ENSSAUG00010015444) sap30bp (ENSSAUG00010015381) CDR2L (ENSSAUG00010015378) mrpl58 (ENSSAUG00010015375) DAGLB (ENSSAUG00010013729) SPAG9 (ENSSAUG00010012366) tob1b (ENSSAUG00010012319) ENSSAUG00010012318 ENSSAUG00010011408 ENSSAUG00010011371 ENSSAUG00010011357 rab3gap1 (ENSSAUG00010011349) CSNK1D (ENSSAUG00010011197) Perciformes ANCESTRAL SPECIES ENSGT01100000263504.a.b.a.a #22 Perciformes_a ANCESTRAL SPECIES 26 ENSGT00940000166369 ENSGT00940000158679 ENSGT00940000153972.B ENSGT00940000158793 ENSGT00390000016247 ENSGT00940000159193 ENSGT00940000155457.a.a.d ENSGT00390000013593 ENSGT00940000157231.a.a ENSGT00390000017627.b ENSGT00530000063534.b ENSGT00940000155900.i ENSGT00940000156937.a.a ENSGT00950000183064.a.b.a.b ENSGT00940000154313.c.a ENSGT01100000263504.a.b.a.a #22 ENSGT00940000164977.a ENSGT00390000002548 ENSGT00940000155573.g.b ENSGT00940000155478.hb.b ENSGT00450000040324.a.a.a ENSGT00940000164418.a.b ENSGT00950000182985.a.b.a ENSGT01030000234613.b.b.h ENSGT00940000159555.v.b ENSGT00950000182772.A.a.a.b.r.a ENSGT00940000161313 ENSGT00940000158344.a.b ENSGT01030000234642.a.b.b.d.b.c.b ENSGT00940000162120.f.a ENSGT00950000183079.A.b.c.b Channel bull blenny MODERN SPECIES 5 opcml (ENSCGOG00000022808) PANX3 (ENSCGOG00000022820) pknox2 (ENSCGOG00000022828) tmem218 (ENSCGOG00000022838) ENSCGOG00000022839 ENSCGOG00000022841 robo3 (ENSCGOG00000022868) MSANTD2 (ENSCGOG00000023128) esama (ENSCGOG00000023131) fez1 (ENSCGOG00000023133) ENSCGOG00000023142 IGSF9B (ENSCGOG00000023146) jam3b (ENSCGOG00000023149) vps26bl (ENSCGOG00000023160) ARHGAP32 (ENSCGOG00000023196) h3f3c (ENSCGOG00000023506) #22 crx (ENSCGOG00000023527) kptn (ENSCGOG00000023528) nova1 (ENSCGOG00000023557) capns1b (ENSCGOG00000023564) zgc:153990 (ENSCGOG00000023587) dlb (ENSCGOG00000023588) ppp1r14aa (ENSCGOG00000023589) ENSCGOG00000023592 MARK4 (ENSCGOG00000023623) ckma (ENSCGOG00000023727) nccrp1 (ENSCGOG00000023753) slc8a2a (ENSCGOG00000023761) hnrnpl (ENSCGOG00000023768) irf2bp1 (ENSCGOG00000023781) micu2 (ENSCGOG00000023783) Otomorpha ANCESTRAL SPECIES 132 ENSGT00940000154852.a ENSGT00530000066748 ENSGT00940000159861 ENSGT00390000008957 ENSGT00940000160173 ENSGT00940000158109 ENSGT00810000125570 ENSGT00940000160651 ENSGT00530000064671 ENSGT00940000159396 ENSGT00940000156610 ENSGT00390000000306 ENSGT01100000263504.a.b.a.a #22 ENSGT01100000263504.a.b.a.b.a.a ##35 ENSGT01100000263504.a.b.a.b.a.b ##35 ENSGT00510000049652 ENSGT00940000154307.A ENSGT00390000017838 ENSGT00940000159641 ENSGT00940000153801.a ENSGT00440000033742.a.a ENSGT00390000006698 ENSGT00940000153417.A ENSGT00390000015528 ENSGT00940000160069 ENSGT00390000013678 ENSGT00390000001390.b ENSGT00530000063870.b Otophysi ANCESTRAL SPECIES 112 ENSGT00940000154852.a ENSGT00530000066748 ENSGT00940000159861 ENSGT00390000008957 ENSGT00940000160173 ENSGT00940000158109 ENSGT00810000125570 ENSGT00940000160651 ENSGT00530000064671 ENSGT00940000159396 ENSGT00940000156610 ENSGT00390000000306 ENSGT01100000263504.a.b.a.a #22 ENSGT01100000263504.a.b.a.b.a.a ##35 ENSGT01100000263504.a.b.a.b.a.b ##35 ENSGT00510000049652 ENSGT00940000154307.A ENSGT00390000017838 ENSGT00940000159641 ENSGT00940000153801.a ENSGT00440000033742.a.a ENSGT00390000006698 ENSGT00390000015528 ENSGT00940000153417.A ENSGT00390000013678 ENSGT00390000001390.b ENSGT00530000063870.b ENSGT01100000263515.a.b.a.b.a.h Characiphysae ANCESTRAL SPECIES 49 ENSGT00940000167095.A ENSGT00390000001260 ENSGT00940000164903.a ENSGT00940000154852.a ENSGT00530000066748 ENSGT00940000159861 ENSGT00390000008957 ENSGT00940000160173 ENSGT00940000158109 ENSGT00810000125570 ENSGT00940000160651 ENSGT00530000064671 ENSGT00940000159396 ENSGT00940000156610 ENSGT00390000000306 ENSGT01100000263504.a.b.a.a #22 ENSGT00510000049652 ENSGT00940000154307.A ENSGT00390000017838 ENSGT00940000159641 ENSGT00940000153801.a ENSGT00440000033742.a.a ENSGT00390000012596.f ENSGT00940000164178.db.a ENSGT00940000156004 ENSGT00940000155909.o.a ENSGT00530000063608.A ENSGT01020000230359.A ENSGT01020000230359.B.b ENSGT01020000230359.B.a ENSGT00940000166969.b Characiphysae_b ANCESTRAL SPECIES 99 ENSGT00390000001260 ENSGT00940000164903.a ENSGT00940000154852.a ENSGT00530000066748 ENSGT00940000159861 ENSGT00390000008957 ENSGT00940000171912 ENSGT00940000160173 ENSGT00940000158109 ENSGT00810000125570 ENSGT00940000160651 ENSGT00530000064671 ENSGT00940000159396 ENSGT00940000156610 ENSGT00390000000306 ENSGT01100000263504.a.b.a.a #22 ENSGT00510000049652 ENSGT00940000154307.A ENSGT00390000017838 ENSGT00940000159641 ENSGT00940000153801.a ENSGT00440000033742.a.a ENSGT00390000012596.f ENSGT00940000164178.db.a ENSGT00940000156004 ENSGT00940000155909.o.a ENSGT00530000063608.A ENSGT01020000230359.A ENSGT01020000230359.B.b ENSGT01020000230359.B.a ENSGT00940000154766.b Electric eel MODERN SPECIES 510 ENSEEEG00000005149 ENSEEEG00000005146 ENSEEEG00000005139 rhot2 (ENSEEEG00000003631) h1-0 (ENSEEEG00000003551) rhbdl1 (ENSEEEG00000003550) zgc:112496 (ENSEEEG00000003549) wdr24 (ENSEEEG00000003544) anks3 (ENSEEEG00000003542) zgc:112185 (ENSEEEG00000003541) ENSEEEG00000003539 #22 ENSEEEG00000003538 ENSEEEG00000003537 ENSEEEG00000003536 RDH13 (ENSEEEG00000003535) decr2 (ENSEEEG00000003534) RAB11FIP3 (ENSEEEG00000003527) ENSEEEG00000003523 ddc (ENSEEEG00000003465) GRB10 (ENSEEEG00000003428) cobl (ENSEEEG00000003414) CX3CR1 (ENSEEEG00000003413) ENSEEEG00000003412 Characoidei ANCESTRAL SPECIES 60 ENSGT00940000167095.A ENSGT00390000001260 ENSGT00940000164903.a ENSGT00940000154852.a ENSGT00530000066748 ENSGT00940000159861 ENSGT00390000008957 ENSGT00940000160173 ENSGT00940000158109 ENSGT00810000125570 ENSGT00940000160651 ENSGT00530000064671 ENSGT00940000159396 ENSGT00940000156610 ENSGT00390000000306 ENSGT01100000263504.a.b.a.a #22 ENSGT00510000049652 ENSGT00390000017838 ENSGT00940000154307.A ENSGT01000000218705 ENSGT00940000159641 ENSGT00940000153801.a ENSGT00440000033742.a.a ENSGT00390000012596.f ENSGT00940000164178.db.a ENSGT00940000156004 ENSGT00940000155909.o.a ENSGT00530000063608.A ENSGT01020000230359.A.u ENSGT01020000230359.B.b ENSGT01020000230359.B.a Mexicana tetra MODERN SPECIES 2 ube2ib (ENSAMXG00000031406) ENSAMXG00000040411 cog7 (ENSAMXG00000011966) kcnc3b (ENSAMXG00000011957) NLRC3 (ENSAMXG00000007153) cluap1 (ENSAMXG00000007155) ENSAMXG00000031513 ENSAMXG00000035156 rhot2 (ENSAMXG00000007201) h1-0 (ENSAMXG00000025194) rhbdl1 (ENSAMXG00000007206) zgc:112496 (ENSAMXG00000040622) wdr24 (ENSAMXG00000007215) anks3 (ENSAMXG00000007218) zgc:112185 (ENSAMXG00000007222) ENSAMXG00000037939 #22 ENSAMXG00000007229 ENSAMXG00000025195 ENSAMXG00000035390 scgn (ENSAMXG00000037361) CARMIL1 (ENSAMXG00000007246) ENSAMXG00000040250 TNFRSF11B (ENSAMXG00000035635) si:ch211-93i7.4 (ENSAMXG00000033176) mal2 (ENSAMXG00000040616) CCN3 (ENSAMXG00000035188) enpp2 (ENSAMXG00000007268) taf2 (ENSAMXG00000007296) ca14 (ENSAMXG00000036060) ENSAMXG00000038153 prpf3 (ENSAMXG00000007306) Red-bellied piranha MODERN SPECIES 70 kcnc3b (ENSPNAG00000002550) SBK1 (ENSPNAG00000002535) ENSPNAG00000002526 NLRC3 (ENSPNAG00000013023) cluap1 (ENSPNAG00000013013) WDR90 (ENSPNAG00000012985) rhot2 (ENSPNAG00000012869) h1-0 (ENSPNAG00000006809) ENSPNAG00000002382 ENSPNAG00000012749 rhbdl1 (ENSPNAG00000012743) zgc:112496 (ENSPNAG00000012729) wdr24 (ENSPNAG00000002356) anks3 (ENSPNAG00000012645) zgc:112185 (ENSPNAG00000012593) ENSPNAG00000002301 #22 ENSPNAG00000002298 ENSPNAG00000002295 ENSPNAG00000012555 RDH13 (ENSPNAG00000002293) decr2 (ENSPNAG00000002290) rab11fip3 (ENSPNAG00000012528) ENSPNAG00000002266 AGL (ENSPNAG00000012454) ENSPNAG00000012300 ddc (ENSPNAG00000012267) GRB10 (ENSPNAG00000002153) cobl (ENSPNAG00000012144) ENSPNAG00000012073 CCR8 (ENSPNAG00000002086) CCR8 (ENSPNAG00000012062) Cyprinoidei ANCESTRAL SPECIES 46 ENSGT00510000047770.c.a ENSGT00940000159788.a.a ENSGT00940000175510 ENSGT00940000160550 ENSGT00940000159869 ENSGT00940000159005.c.a.b ENSGT00940000157696 ENSGT00550000075071 ENSGT00390000002628 ENSGT01100000263632 ENSGT00950000182979.a.b.b.b.b.i.a ENSGT00940000163663.B.a ENSGT00940000160824 ENSGT00940000176030 ENSGT00940000158822 ENSGT01100000263504.a.b.a.a #22 ENSGT01100000263504.a.b.a.b.a.a ##35 ENSGT00390000001474 ENSGT00390000008920.c.b ENSGT00940000159702 ENSGT00550000074807.c ENSGT00940000161634 ENSGT00940000160308 ENSGT00390000007686.a ENSGT00390000000417.a.a.b.b ##11 ENSGT01100000263504.a.b.a.b.a.b ##35 ENSGT00940000154307.B Zebrafish MODERN SPECIES 20 ENSDARG00000116863 ENSDARG00000103786 klhl13 (ENSDARG00000086463) wdr44 (ENSDARG00000060249) zgc:163098 (ENSDARG00000078911) ENSDARG00000103956 LRCH2 (ENSDARG00000075580) il13ra2 (ENSDARG00000039436) tagln2 (ENSDARG00000033466) ENSDARG00000100476 tppp2 (ENSDARG00000035338) ENSDARG00000101155 ENSDARG00000035339 nfkbib (ENSDARG00000030087) gjd1a (ENSDARG00000111977) h3f3c (ENSDARG00000033009) #22 crx (ENSDARG00000011989) kptn (ENSDARG00000015937) hnrnpl (ENSDARG00000035324) srsf7a (ENSDARG00000035325) slc8a2a (ENSDARG00000008912) nccrp1 (ENSDARG00000035326) ckma (ENSDARG00000035327) ENSDARG00000023914 ENSDARG00000008414 ppp1r14aa (ENSDARG00000011239) dlb (ENSDARG00000004232) zgc:153990 (ENSDARG00000053716) capns1a (ENSDARG00000035329) alkbh6 (ENSDARG00000077253) ENSDARG00000116148 Cyprininae ANCESTRAL SPECIES 301 ENSGT00940000160824.b.a.a ENSGT00940000176030 ENSGT00940000158822.c ENSGT01100000263504.a.b.a.a #22 ENSGT01100000263504.a.b.a.b.a.a ##35 ENSGT00940000154307.B.e ENSGT01060000248742.f ENSGT00730000110939.a.c.b ENSGT00550000075088.a.a.d ENSGT00510000049239.b.b.a ENSGT00940000167095.B ENSGT00940000155267.t.b ENSGT00940000160374.d.b.a ENSGT00940000156355.n.a.a ENSGT00940000160498.c.g ENSGT00940000161466.e ENSGT00940000158074 ENSGT00390000009084.a ENSGT00530000069547.f Goldfish DUPLICATION Goldfish MODERN SPECIES 34 socs9 (ENSCARG00000063074) paf1 (ENSCARG00000062681) ENSCARG00000062611 ENSCARG00000062602 SAMD4B (ENSCARG00000062440) psma6l (ENSCARG00000062392) otx5 (ENSCARG00000062381) ENSCARG00000062331 ENSCARG00000062311 ##11 h3f3b.1 (ENSCARG00000062294) ##35 ENSCARG00000062235 ENSCARG00000062155 tomt (ENSCARG00000062129) DMWD (ENSCARG00000062096) ENSCARG00000062046 ##11 ENSCARG00000062023 #22 ENSCARG00000061999 ##35 eif3k (ENSCARG00000061797) ENSCARG00000061787 tomt (ENSCARG00000061772) inppl1a (ENSCARG00000058711) inppl1a (ENSCARG00000061553) phox2a (ENSCARG00000058622) CLPB (ENSCARG00000054911) ENSCARG00000052655 ENSCARG00000052562 ENSCARG00000052534 ENSCARG00000052525 gap43 (ENSCARG00000052506) ENSCARG00000052473 stard10 (ENSCARG00000052433) Goldfish DUPLICATION Goldfish MODERN SPECIES 44 SPTBN2 (ENSCARG00000026294) LTBP3 (ENSCARG00000024120) ENSCARG00000024056 ENSCARG00000024051 ENSCARG00000011596 WDR44 (ENSCARG00000010814) zgc:163098 (ENSCARG00000010742) LRCH2 (ENSCARG00000010637) il13ra2 (ENSCARG00000010626) tagln2 (ENSCARG00000010611) ENSCARG00000010606 tppp2 (ENSCARG00000010599) ENSCARG00000010590 nfkbib (ENSCARG00000010573) gjd1a (ENSCARG00000010565) ENSCARG00000010552 #22 crx (ENSCARG00000010543) kptn (ENSCARG00000010208) hnrnpl (ENSCARG00000008888) srsf7a (ENSCARG00000008826) slc8a2a (ENSCARG00000008802) nccrp1 (ENSCARG00000008781) ckma (ENSCARG00000008764) MARK4 (ENSCARG00000008209) ENSCARG00000008175 ppp1r14aa (ENSCARG00000008164) dlb (ENSCARG00000008146) zgc:153990 (ENSCARG00000008139) capns1a (ENSCARG00000008117) nova1 (ENSCARG00000008095) micu2 (ENSCARG00000008055) Goldfish MODERN SPECIES 6 cldn15lb (ENSCARG00000002606) atg16l1 (ENSCARG00000002743) IWS1 (ENSCARG00000004739) ENSCARG00000004830 DGKD (ENSCARG00000004861) zgc:162872 (ENSCARG00000005062) igsf11 (ENSCARG00000005101) lrfn1 (ENSCARG00000005111) ENSCARG00000005116 ENSCARG00000005136 ENSCARG00000005147 SIK3 (ENSCARG00000005189) otx5 (ENSCARG00000005548) MAP4K1 (ENSCARG00000005580) DMWD (ENSCARG00000005684) ENSCARG00000005691 #22 eif3k (ENSCARG00000005711) ENSCARG00000005792 KBTBD3 (ENSCARG00000005803) tomt (ENSCARG00000005811) anapc15 (ENSCARG00000005820) folr (ENSCARG00000005825) inppl1a (ENSCARG00000005892) phox2a (ENSCARG00000006671) CLPB (ENSCARG00000006682) stard10 (ENSCARG00000006706) ARAP1 (ENSCARG00000006769) ENSCARG00000007198 ENSCARG00000007211 ENSCARG00000007220 ENSCARG00000007225 Cyprininae_a ANCESTRAL SPECIES 506 ENSGT00940000161634 ENSGT00940000160308.u ENSGT00390000007686.a.e ENSGT00390000000417.a.a.b.b ##11 ENSGT01100000263504.a.b.a.b.a.b.ab ##35 ENSGT01100000263504.a.b.a.a #22 ENSGT00390000009409 ENSGT00940000156432.b ENSGT00940000161220.g.a ENSGT00940000156576.e ENSGT00940000161147.b.a ENSGT00390000012961.j ENSGT00510000047611.rb.a ENSGT00940000157424.hc.a Golden-line barbel MODERN SPECIES 1023 IGFALS (ENSSGRG00000020077) UNKL (ENSSGRG00000020086) ENSSGRG00000020429 #22 gper1 (ENSSGRG00000020430) gpr146 (ENSSGRG00000020431) ube2ia (ENSSGRG00000020438) il21r.1 (ENSSGRG00000020571) il21r.2 (ENSSGRG00000020574) pdpk1a (ENSSGRG00000020617) kctd5a (ENSSGRG00000021791) USP31 (ENSSGRG00000021792) Common carp reference MODERN SPECIES 39 ENSCCRG00000010722 ENSCCRG00000072429 ENSCCRG00000026938 ENSCCRG00000024079 ENSCCRG00000074257 ENSCCRG00000069953 ENSCCRG00000032164 ENSCCRG00000075045 ENSCCRG00000077315 psma6l (ENSCCRG00000058024) otx5 (ENSCCRG00000062504) ENSCCRG00000069241 ENSCCRG00000059194 ENSCCRG00000015258 ##11 h3f3b.1 (ENSCCRG00000058606) ##35 ENSCCRG00000015263 #22 eif3k (ENSCCRG00000061494) ENSCCRG00000015273 tomt (ENSCCRG00000027212) inppl1a (ENSCCRG00000027201) ENSCCRG00000064997 CLPB (ENSCCRG00000069599) STARD10 (ENSCCRG00000055526) ENSCCRG00000043135 PDE2A (ENSCCRG00000058540) cep57 (ENSCCRG00000013803) ENSCCRG00000052923 zgc:153039 (ENSCCRG00000065574) ENSCCRG00000014612 chrd (ENSCCRG00000014623) ENSCCRG00000020917 Clupeiformes ANCESTRAL SPECIES 321 ENSGT00940000178199 ENSGT00390000013574 ENSGT00900000141125 ENSGT00940000162951 ENSGT00530000063718.a.a ENSGT00730000110939.b ENSGT00940000159360 ENSGT01100000263504.a.b.a.a #22 ENSGT01030000235280 ENSGT00390000017838 ENSGT00940000154307.A ENSGT00940000171204 ENSGT00940000163587.a.b.a.c.b ENSGT01100000263555.b ENSGT00390000007870 ENSGT00940000176223 ENSGT00390000018570.b.a Atlantic herring DUPLICATION Atlantic herring MODERN SPECIES 15 tmem26b (ENSCHAG00000002869) tmem26b (ENSCHAG00000002907) RHOBTB1 (ENSCHAG00000002968) ANK3 (ENSCHAG00000003915) ccdc6b (ENSCHAG00000011842) slc16a9b (ENSCHAG00000011902) NLRC3 (ENSCHAG00000011937) cluap1 (ENSCHAG00000012092) ENSCHAG00000012147 ENSCHAG00000012255 rhot2 (ENSCHAG00000013419) h1-0 (ENSCHAG00000013597) wdr24 (ENSCHAG00000013604) anks3 (ENSCHAG00000013721) zgc:112185 (ENSCHAG00000013795) ENSCHAG00000013801 #22 ENSCHAG00000013850 ENSCHAG00000013857 ENSCHAG00000013869 ENSCHAG00000013921 ENSCHAG00000014115 ENSCHAG00000014133 ENSCHAG00000014327 ENSCHAG00000014489 CHAT (ENSCHAG00000014507) SLC18A3 (ENSCHAG00000014922) pus3 (ENSCHAG00000014933) ENSCHAG00000014940 ENSCHAG00000014999 ENSCHAG00000015027 ENSCHAG00000015033 Atlantic herring MODERN SPECIES ENSCHAG00000013594 ENSCHAG00000013525 ENSCHAG00000013505 ENSCHAG00000013491 ENSCHAG00000013218 ENSCHAG00000013190 ENSCHAG00000012989 ENSCHAG00000012779 PNMT (ENSCHAG00000012710) FDXR (ENSCHAG00000012254) mrpl38 (ENSCHAG00000012228) ENSCHAG00000012213 wbp2 (ENSCHAG00000012199) UNC13D (ENSCHAG00000012176) unk (ENSCHAG00000012125) ENSCHAG00000012114 #22 zgc:194990 (ENSCHAG00000012102) itgb4 (ENSCHAG00000004532) sap30bp (ENSCHAG00000004144) ENSCHAG00000004114 CDR2L (ENSCHAG00000004097) COPS3 (ENSCHAG00000003434) NT5M (ENSCHAG00000003403) MED9 (ENSCHAG00000003396) rasd1 (ENSCHAG00000003373) PEMT (ENSCHAG00000003345) snrnp25 (ENSCHAG00000003328) ENSCHAG00000003293 LMF1 (ENSCHAG00000002543) sox8a (ENSCHAG00000002428) ENSCHAG00000002408 Chordata DUPLICATION Chordata DUPLICATION Chordata ANCESTRAL SPECIES ENSGT01100000263504.a.b.a.b.a.a ##35 Vertebrata ANCESTRAL SPECIES ENSGT01100000263504.a.b.a.b.a.a ##35 Gnathostomata ANCESTRAL SPECIES ENSGT01100000263504.a.b.a.b.a.a ##35 Euteleostomi ANCESTRAL SPECIES 284 ENSGT00510000048783 ENSGT00940000155267 ENSGT00940000160374 ENSGT00550000075088.a.a ENSGT00730000110939.a ENSGT00390000014665 ENSGT00510000048359 ENSGT00940000158822 ENSGT01100000263504.a.b.a.b.a.a ##35 ENSGT00510000049652 ENSGT00390000006068 ENSGT00390000017838 ENSGT00940000154307.B ENSGT01030000234518.B.b Actinopterygii ANCESTRAL SPECIES 162 ENSGT00940000158074 ENSGT00940000161466 ENSGT00940000160498 ENSGT00940000156355.n.a ENSGT00940000160352 ENSGT00940000160893 ENSGT00390000001260 ENSGT00510000048783.a ENSGT00940000155267 ENSGT00940000160374 ENSGT00550000075088.a.a ENSGT00730000110939.a ENSGT00390000014665 ENSGT00510000048359 ENSGT00940000158822 ENSGT01100000263504.a.b.a.b.a.a ##35 ENSGT00510000049652 ENSGT00390000006068 ENSGT00390000017838 ENSGT00940000154307.B ENSGT01030000234518.B.b Reedfish DUPLICATION Reedfish MODERN SPECIES 11 ENSECRG00000001002 ENSECRG00000001023 ENSECRG00000001201 vip (ENSECRG00000001669) ENSECRG00000001683 fbxo5 (ENSECRG00000001692) MTRF1L (ENSECRG00000001698) cdc42bpab (ENSECRG00000001749) #31 lft2 (ENSECRG00000001876) #20 tmem63a (ENSECRG00000002026) #17 rsph9 (ENSECRG00000002067) rsph9 (ENSECRG00000002101) rsph9 (ENSECRG00000002130) mrps18a (ENSECRG00000002145) vegfab (ENSECRG00000002185) ENSECRG00000002219 ##35 acbd3 (ENSECRG00000002232) #23 lin9 (ENSECRG00000002268) #25 ENSECRG00000002325 #24 pgbd5 (ENSECRG00000002343) cog2 (ENSECRG00000002358) agt (ENSECRG00000002382) capn9 (ENSECRG00000002406) ENSECRG00000002432 PHACTR2 (ENSECRG00000002447) ltv1 (ENSECRG00000002473) ENSECRG00000002503 sf3b5 (ENSECRG00000002516) oprm1 (ENSECRG00000002528) rgs17 (ENSECRG00000002543) ENSECRG00000002619 #30 Reedfish MODERN SPECIES 238 ENSECRG00000017349 ##35 ENSECRG00000017384 radil (ENSECRG00000017492) ap5z1 (ENSECRG00000017638) foxk1 (ENSECRG00000017703) ENSECRG00000017736 Neopterygii ANCESTRAL SPECIES ENSGT01100000263504.a.b.a.b.a.a ##35 Osteoglossocephalai ANCESTRAL SPECIES 161 ENSGT00940000154852.a ENSGT00530000066748 ENSGT00940000159861 ENSGT00390000008957 ENSGT00940000166280 ENSGT00940000160173 ENSGT00940000158109 ENSGT00810000125570 ENSGT00940000160651 ENSGT00530000064671 ENSGT00940000159396 ENSGT00940000156610 ENSGT00390000000306 ENSGT00940000160824 ENSGT00940000158822 ENSGT01100000263504.a.b.a.b.a.a ##35 ENSGT00510000049652 ENSGT00940000154307.B ENSGT00390000006068 ENSGT00390000017838 ENSGT00510000048359 ENSGT00390000014665 ENSGT00510000048783.a ENSGT00390000001260 ENSGT00940000156355.n.a ENSGT00940000160498 ENSGT00940000161466 ENSGT00940000158074 ENSGT00390000009084 ENSGT00530000069547 ENSGT00940000159613 Osteoglossiformes ANCESTRAL SPECIES 7 ENSGT00940000167780 ENSGT00940000162710.c.b ENSGT00390000004836 ENSGT00940000159664 ENSGT00940000156819.a.b ENSGT00390000005895 ENSGT00390000014852.a ENSGT00390000004691 ENSGT00940000153514.a.b ENSGT00940000165377 ENSGT00900000141125 ENSGT00940000162951 ENSGT00530000063718.a.a ENSGT00730000110939.b ENSGT00940000159360 ENSGT01100000263504.a.b.a.b.a.a ##35 ENSGT00940000171204 ENSGT00940000163587.a.b.a.c.a.p ENSGT01100000263555.b ENSGT00390000007870 ENSGT00390000018570.b.a ENSGT00940000171764 ENSGT00390000006233.c.b.z.b ENSGT00390000018868.B.a.i ENSGT00550000075186 ENSGT00940000161850 ENSGT00940000159603.b ENSGT00940000157351 ENSGT01070000253837.c ENSGT00640000091541 ENSGT01060000248591.a.a.b.a.b Asian bonytongue MODERN SPECIES 12 ENSSFOG00015001510 ENSSFOG00015001654 SPATA20 (ENSSFOG00015002529) CACNA1G (ENSSFOG00015002549) ENSSFOG00015002675 ogfod3 (ENSSFOG00015002687) hexdc (ENSSFOG00015002706) cybc1 (ENSSFOG00015002722) narf (ENSSFOG00015002768) ENSSFOG00015002779 mrpl38 (ENSSFOG00015002905) ENSSFOG00015002913 wbp2 (ENSSFOG00015030033) UNC13D (ENSSFOG00015002960) unk (ENSSFOG00015003052) ENSSFOG00015029368 ##35 ENSSFOG00015003124 ENSSFOG00015003185 itgb4 (ENSSFOG00015003244) sap30bp (ENSSFOG00015003821) CDR2L (ENSSFOG00015033176) ENSSFOG00015003875 ARHGDIA (ENSSFOG00015027887) alyref (ENSSFOG00015028304) anapc11 (ENSSFOG00015029727) MCRIP1 (ENSSFOG00015030182) ppp1r27b (ENSSFOG00015003997) p4hb (ENSSFOG00015004070) ENSSFOG00015004116 RPTOR (ENSSFOG00015004190) NPTX1 (ENSSFOG00015004398) P. kingsleyae MODERN SPECIES 312 ENSPKIG00000021070 SPATA20 (ENSPKIG00000021415) CACNA1G (ENSPKIG00000021560) ENSPKIG00000021857 ENSPKIG00000021869 ogfod3 (ENSPKIG00000021877) hexdc (ENSPKIG00000021896) cybc1 (ENSPKIG00000021931) narf (ENSPKIG00000021947) ENSPKIG00000021979 mrpl38 (ENSPKIG00000022027) ENSPKIG00000022052 wbp2 (ENSPKIG00000022073) UNC13D (ENSPKIG00000022138) unk (ENSPKIG00000022222) ENSPKIG00000022266 ##35 ENSPKIG00000022281 ENSPKIG00000022306 itgb4 (ENSPKIG00000022391) sap30bp (ENSPKIG00000022577) Clupeocephala ANCESTRAL SPECIES ENSGT01100000263504.a.b.a.b.a.a ##35 Euteleosteomorpha ANCESTRAL SPECIES 139 ENSGT01100000263504.a.b.a.b.a.a ##35 ENSGT00940000164977.a ENSGT00390000002548 ENSGT00940000155573.g.b ENSGT00510000048626 ENSGT00940000155478.hb.b ENSGT00450000040324.a.a.a ENSGT00940000166947 ENSGT00940000164418.a.b ENSGT00950000182985.a.b.a ENSGT01030000234613.b.b.h ENSGT00940000159555.v.b ENSGT01070000253869 ENSGT00940000153582.a.m.a.a.b.b.b.b.b ENSGT00940000154411 ENSGT00940000162179.e.a.a Acanthomorphata ANCESTRAL SPECIES 14 ENSGT01050000244814.a.a.b.b.b.b.b ENSGT00940000166369 ENSGT00940000158679 ENSGT00940000153972.B ENSGT00940000158793 ENSGT00390000016247 ENSGT00940000159193 ENSGT00940000155457.a.a.d ENSGT00390000013593 ENSGT00940000157231.a.a ENSGT00390000017627.b ENSGT00940000155900.i ENSGT00940000156937.a.a ENSGT00950000183064.a.b.a.b ENSGT00940000154313.c.a ENSGT01100000263504.a.b.a.b.a.a ##35 ENSGT00940000164977.a ENSGT00390000002548 ENSGT00940000155573.g.b ENSGT00940000155478.hb.b ENSGT00450000040324.a.a.a ENSGT00940000164418.a.b ENSGT00950000182985.a.b.a ENSGT01030000234613.b.b.h ENSGT00940000159555.v.b ENSGT00940000162179.e.a.a ENSGT00940000164427.a.a ENSGT00940000159555.v.a ENSGT01070000253869 ENSGT00950000182772.A.a.a.b.r.a ENSGT00940000161313 Euacanthomorphacea ANCESTRAL SPECIES ENSGT01100000263504.a.b.a.b.a.a ##35 Percomorphaceae ANCESTRAL SPECIES ENSGT01100000263504.a.b.a.b.a.a ##35 Percomorphaceae_B ANCESTRAL SPECIES 10 ENSGT00940000158679 ENSGT00940000153972.B ENSGT00940000158793 ENSGT00390000016247 ENSGT00940000159193 ENSGT01010000228854 ENSGT00940000155457.a.a.d ENSGT00390000013593 ENSGT00940000157231.a.a ENSGT00390000017627.b ENSGT00530000063534.b ENSGT00940000155900.i ENSGT00940000156937.a.a ENSGT00950000183064.a.b.a.b ENSGT00940000154313.c.a ENSGT01100000263504.a.b.a.b.a.a ##35 ENSGT00940000164977.a ENSGT00390000002548 ENSGT00940000155573.g.b ENSGT00940000155478.hb.b ENSGT00450000040324.a.a.a ENSGT00940000164418.a.b ENSGT00950000182985.a.b.a ENSGT01030000234613.b.b.h ENSGT00940000159555.v.b ENSGT00950000182772.A.a.a.b.r.a ENSGT01100000264924 ENSGT00940000161313 ENSGT00940000158344.a.b ENSGT01030000234642.a.b.b.d.b.c.b ENSGT00940000162120.f.a Ovalentaria ANCESTRAL SPECIES 13 ENSGT00440000033742.a.a ENSGT00940000153801.a ENSGT00940000159641 ENSGT00940000154852.a ENSGT00530000066748 ENSGT00940000159861 ENSGT00940000171912 ENSGT00940000160173 ENSGT00940000158109 ENSGT00810000125570 ENSGT00940000160651 ENSGT00530000064671 ENSGT00940000159396 ENSGT00940000156610 ENSGT00390000000306 ENSGT01100000263504.a.b.a.b.a.a ##35 ENSGT01030000235280 ENSGT00940000154307.A ENSGT00390000006068 ENSGT00390000017838 ENSGT00510000048359 ENSGT00390000014665 ENSGT00940000155267 ENSGT00940000160374 ENSGT00550000075088.a.a ENSGT00940000167095.A ENSGT00940000166841 ENSGT00940000154323.a ENSGT00940000160435 ENSGT00390000002866.a ENSGT00650000094874 Atherinomorphae ANCESTRAL SPECIES 10 ENSGT00940000159664 ENSGT01090000260051.b.a.b ENSGT00940000157017.a.b.a ENSGT00940000156819.a.b ENSGT00390000005895 ENSGT00390000014852.a ENSGT00390000004691 ENSGT00940000153514.a.b ENSGT00390000013574 ENSGT00900000141125 ENSGT00940000162951 ENSGT00530000063718.a.a ENSGT00730000110939.b ENSGT00940000159360 ENSGT01100000263504.a.b.a.a.hb.b #22 ENSGT01100000263504.a.b.a.b.a.a ##35 ENSGT01100000263504.a.b.b.a.b ##35 ENSGT00510000049652 ENSGT01100000263504.a.a ##35 ENSGT00940000167259 ENSGT00940000163587.a.b.a.c.b ENSGT01100000263555.b ENSGT00390000007870 ENSGT00940000176223 ENSGT00390000018570.b.a ENSGT00940000167542 ENSGT00940000156486 ENSGT00940000153496.a.b.a ENSGT00940000154208.c.b ENSGT00940000158031.c ENSGT00940000163867 Oryzias ANCESTRAL SPECIES 8 ENSGT00940000155076.b.a.b ENSGT01030000234927 ENSGT00940000159315 ENSGT00390000003413 ENSGT00390000002625 ENSGT00950000183115.a.a.a ENSGT00940000160281 ENSGT00940000161057.j ENSGT00940000154866.A ENSGT00940000157514.a ENSGT00940000160500 ENSGT01090000260005.a.b.a.b.b.i ENSGT00390000017267 ENSGT01100000263504.a.b.a.a.ib #22 ENSGT00940000164977.b.a.b ENSGT01100000263504.a.b.a.b.a.a ##35 ENSGT00940000154313.c.a ENSGT01100000263504.a.b.b.a.b ##35 ENSGT00940000164977.b.a.a ENSGT00550000074807.c ENSGT00940000153792.A ENSGT00940000156265 ENSGT00940000160533 ENSGT00530000064222.a ENSGT00940000158965 ENSGT00940000160957 ENSGT00940000165302 ENSGT00940000160692 ENSGT01030000234592.A.b.a ENSGT00730000111885.f ENSGT00390000016324 Oryzias_b ANCESTRAL SPECIES 62 ENSGT00940000154313.c.a ENSGT01100000263504.a.b.a.b.a.a ##35 ENSGT00940000164977.a ENSGT00390000002548 ENSGT00940000155573.g.b ENSGT00940000155478.hb.b ENSGT00450000040324.a.a.a ENSGT00940000164418.a.b ENSGT00950000182985.a.b.a ENSGT01030000234613.b.b.h ENSGT00940000159555.v.b ENSGT01070000253869 ENSGT00950000182772.A.a.a.b.r.a ENSGT00940000161313 ENSGT00940000158344.a.b ENSGT01030000234642.a.b.b.d.b.c.b ENSGT00940000162120.f.a Javanese ricefish MODERN SPECIES 5 GALNT10 (ENSOJAG00000011644) jam3b (ENSOJAG00000011598) IGSF9B (ENSOJAG00000011428) ENSOJAG00000011360 ARHGAP32 (ENSOJAG00000010905) ENSOJAG00000010869 ##35 crx (ENSOJAG00000010856) kptn (ENSOJAG00000010789) nova1 (ENSOJAG00000010732) capns1b (ENSOJAG00000010708) zgc:153990 (ENSOJAG00000010696) dlb (ENSOJAG00000010685) ppp1r14aa (ENSOJAG00000010676) ENSOJAG00000010571 MARK4 (ENSOJAG00000010267) ENSOJAG00000010224 ckma (ENSOJAG00000010121) ENSOJAG00000010110 nccrp1 (ENSOJAG00000010104) slc8a2a (ENSOJAG00000010019) hnrnpl (ENSOJAG00000009629) Oryzias_a ANCESTRAL SPECIES 8 ENSGT00390000015165 ENSGT00940000161203 ENSGT00940000155076.b.a.b ENSGT01030000234927 ENSGT00940000159315 ENSGT00390000003413 ENSGT00390000002625 ENSGT00950000183115.a.a.a ENSGT00940000160281 ENSGT00940000161057.j ENSGT00940000154866.A ENSGT00940000157514.a ENSGT00940000160500 ENSGT01090000260005.a.b.a.b.b.i ENSGT00390000017267 ENSGT01100000263504.a.b.a.b.a.a ##35 ENSGT01100000263504.a.b.b.a.b ##35 ENSGT00940000164977.b.a.a ENSGT00550000074807.c ENSGT00940000153792.A ENSGT00940000156265 ENSGT00940000160533 ENSGT00530000064222.a ENSGT00940000158965 ENSGT00940000160957 ENSGT00940000165302 ENSGT00940000160692 ENSGT01030000234592.A.b.a ENSGT00730000111885.f ENSGT00390000016324 ENSGT00940000156948.j Japanese Medaka HdrR MODERN SPECIES 4 zgc:172282 (ENSORLG00000008364) zgc:162730 (ENSORLG00000027149) ENSORLG00000008381 SGSM2 (ENSORLG00000008415) lyrm9 (ENSORLG00000024775) ift20 (ENSORLG00000008436) ITM2C (ENSORLG00000008477) ENSORLG00000008506 meis3 (ENSORLG00000008534) ENSORLG00000027773 ENSORLG00000008542 sirt2 (ENSORLG00000008571) dmac2 (ENSORLG00000008587) ENSORLG00000008596 nop53 (ENSORLG00000008659) ENSORLG00000028044 ##35 ENSORLG00000024385 ##35 ENSORLG00000008681 psma6l (ENSORLG00000008691) sars2 (ENSORLG00000008723) si:dkey-260j18.2 (ENSORLG00000023288) slc5a2 (ENSORLG00000008769) fbxo46 (ENSORLG00000027456) coq8b (ENSORLG00000008795) numbl (ENSORLG00000008819) ENSORLG00000025972 dpf1 (ENSORLG00000008855) ENSORLG00000023826 ENSORLG00000006780 pxylp1 (ENSORLG00000008865) ENSORLG00000028296 Chinese medaka MODERN SPECIES 584 nop53 (ENSOSIG00000000973) ENSOSIG00000000985 ##35 Cyprinodontiformes ANCESTRAL SPECIES 13 ENSGT00960000186809 ENSGT00940000159664 ENSGT01090000260051.b.a.b ENSGT00940000156819.a.b ENSGT00390000005895 ENSGT00390000014852.a ENSGT00390000004691 ENSGT00940000153514.a.b ENSGT00390000013574 ENSGT00900000141125 ENSGT00940000162951 ENSGT00530000063718.a.a ENSGT00730000110939.b ENSGT00940000159360 ENSGT01100000263504.a.b.a.a.hb.b #22 ENSGT01100000263504.a.b.a.b.a.a ##35 ENSGT01100000263504.a.b.b.a.b ##35 ENSGT01100000263504.a.a ##35 ENSGT00940000167259 ENSGT00940000163587.a.b.a.c.b ENSGT01100000263555.b ENSGT00390000007870 ENSGT00940000176223 ENSGT00390000018570.b.a ENSGT00940000167542 ENSGT00940000156486 ENSGT00940000153496.a.b.a ENSGT00940000154208.c.b ENSGT00940000158031.c ENSGT00940000163867 ENSGT00940000164726.b Cyprinodontoidei ANCESTRAL SPECIES 28 ENSGT00390000004836 ENSGT00960000186809 ENSGT00940000159664 ENSGT01090000260051.b.a.b ENSGT00940000156819.a.b ENSGT00390000005895 ENSGT00390000014852.a ENSGT00390000004691 ENSGT00940000153514.a.b ENSGT00390000013574 ENSGT00900000141125 ENSGT00940000162951 ENSGT00530000063718.a.a ENSGT00730000110939.b ENSGT00940000159360 ENSGT01100000263504.a.b.a.b.a.a ##35 ENSGT01100000263504.a.b.b.a.b ##35 ENSGT01100000263504.a.a ##35 ENSGT00940000167259 ENSGT00940000163587.a.b.a.c.b ENSGT01100000263555.b ENSGT00390000007870 ENSGT00940000176223 ENSGT00390000018570.b.a ENSGT01080000257338.B.d ENSGT00940000171764 ENSGT00390000013268 ENSGT00940000156486 ENSGT00940000153496.a.b.a ENSGT00940000154208.c.b ENSGT00940000158031.c NAME_4 ANCESTRAL SPECIES 694 ENSGT01100000263504.a.b.a.b.a.a ##35 ENSGT00940000164977.b.a.b Sheepshead minnow MODERN SPECIES 597 nop53 (ENSCVAG00000005940) h3f3b.1 (ENSCVAG00000005957) ##35 ENSCVAG00000005968 ##35 ENSCVAG00000005976 psma6l (ENSCVAG00000006047) sars2 (ENSCVAG00000006065) si:dkey-260j18.2 (ENSCVAG00000006078) slc5a2 (ENSCVAG00000006118) fbxo46 (ENSCVAG00000006128) coq8b (ENSCVAG00000006139) numbl (ENSCVAG00000006158) ENSCVAG00000006197 dpf1 (ENSCVAG00000000179) ENSCVAG00000006246 ENSCVAG00000006269 Poeciliinae ANCESTRAL SPECIES 14 ENSGT00390000012296 ENSGT01010000222313.A.b.b.b.b ENSGT00940000174362.A ENSGT00940000161398.e ENSGT00940000164578.a.a ENSGT00390000004360.a.a ENSGT00950000183115.a.a.a ENSGT00950000183136.b.b.d ENSGT00940000160281 ENSGT00940000161057 ENSGT00940000154866.A ENSGT00940000157514.a ENSGT00940000160500 ENSGT01090000260005.a.b.a.b.b.i ENSGT00390000017267 ENSGT01100000263504.a.b.a.b.a.a ##35 ENSGT01100000263504.a.b.b.a.b ##35 ENSGT01100000263504.a.a ##35 ENSGT00940000164977.b.a.b ENSGT00550000074807.c ENSGT00940000153792.A ENSGT00940000156265 ENSGT00940000160533 ENSGT00530000064222.a ENSGT00940000158965 ENSGT00940000160957 ENSGT00940000165302 ENSGT00940000160692 ENSGT01030000234592.A.b.a ENSGT00390000017365.b.`c ENSGT00390000017365.b.yb.a Poecilia ANCESTRAL SPECIES 2 ENSGT01010000222313.A.b.b.b.b ENSGT00940000174362.A ENSGT00940000161398.e ENSGT00940000164578.a.a ENSGT01100000263473.a.b.h.b.d ENSGT00390000004360.a.a ENSGT00950000183115.a.a.a ENSGT00950000183136.b.b.d ENSGT00940000160281 ENSGT00940000161057 ENSGT00940000154866.A ENSGT00940000157514.a ENSGT00940000160500 ENSGT01090000260005.a.b.a.b.b.i ENSGT00390000017267 ENSGT01100000263504.a.b.a.b.a.a ##35 ENSGT01100000263504.a.b.b.a.b ##35 ENSGT01100000263504.a.a ##35 ENSGT00940000164977.b.a.b ENSGT00550000074807.c ENSGT00940000153792.A ENSGT00940000156265 ENSGT00940000160533 ENSGT00530000064222.a ENSGT00940000158965 ENSGT00940000160957 ENSGT00940000165302 ENSGT00940000160692 ENSGT01030000234592.A.b.a ENSGT00390000017365.b.`c ENSGT00390000017365.b.yb.a Guppy MODERN SPECIES 443 ENSPREG00000009116 ENSPREG00000009074 her13 (ENSPREG00000009056) her8.2 (ENSPREG00000009052) ENSPREG00000009042 ENSPREG00000009004 ITM2C (ENSPREG00000008957) lpar5b (ENSPREG00000008941) ENSPREG00000008927 meis3 (ENSPREG00000008858) ENSPREG00000008837 sirt2 (ENSPREG00000008808) dmac2 (ENSPREG00000008774) GJD2 (ENSPREG00000008751) nop53 (ENSPREG00000008711) ENSPREG00000008418 ##35 ENSPREG00000008234 ENSPREG00000008212 psma6l (ENSPREG00000008188) sars2 (ENSPREG00000008164) si:dkey-260j18.2 (ENSPREG00000008151) slc5a2 (ENSPREG00000008113) fbxo46 (ENSPREG00000008095) coq8b (ENSPREG00000008063) numbl (ENSPREG00000008016) ENSPREG00000007983 dpf1 (ENSPREG00000007941) ENSPREG00000007914 ENSPREG00000007876 ENSPREG00000007851 pnkp (ENSPREG00000007830) NAME_6 ANCESTRAL SPECIES 48 ENSGT00940000174362.A ENSGT00940000161398.e ENSGT00940000164578.a.a ENSGT01100000263473.a.b.h.b.d ENSGT00390000004360.a.a ENSGT00950000183115.a.a.a ENSGT00950000183136.b.b.d ENSGT00940000160281 ENSGT00940000161057 ENSGT00940000154866.A ENSGT00940000157514.a ENSGT00940000160500 ENSGT01090000260005.a.b.a.b.b.i ENSGT00390000017267 ENSGT01100000263504.a.b.a.a.ib #22 ENSGT01100000263504.a.b.a.b.a.a ##35 ENSGT01100000263504.a.b.b.a.b ##35 ENSGT01100000263504.a.a ##35 ENSGT00940000164977.b.a.b ENSGT00550000074807.c ENSGT00940000153792.A ENSGT00940000156265 ENSGT00940000160533 ENSGT00530000064222.a ENSGT00940000158965 ENSGT00940000160957 ENSGT00940000165302 ENSGT00940000160692 ENSGT01030000234592.A.b.a ENSGT00390000017365.b.`c.f ENSGT00390000017365.b.`c.e Amazon molly MODERN SPECIES 662 ENSPFOG00000015995 NLRC3 (ENSPFOG00000015889) ENSPFOG00000015868 WDR90 (ENSPFOG00000015613) rhot2 (ENSPFOG00000022813) h1-0 (ENSPFOG00000020624) rhbdl1 (ENSPFOG00000022368) zgc:112496 (ENSPFOG00000015555) wdr24 (ENSPFOG00000015521) anks3 (ENSPFOG00000015477) h3f3d (ENSPFOG00000015437) ##35 ENSPFOG00000015436 zgc:112185 (ENSPFOG00000015452) ENSPFOG00000015426 ##35 ENSPFOG00000024069 ENSPFOG00000020622 ENSPFOG00000022155 C7orf50 (ENSPFOG00000015411) gnptg (ENSPFOG00000015351) tsr3 (ENSPFOG00000015332) tsr3 (ENSPFOG00000015318) pdpk1b (ENSPFOG00000015275) gnptg (ENSPFOG00000015259) tsr3 (ENSPFOG00000015238) pdpk1b (ENSPFOG00000015149) kctd5a (ENSPFOG00000015132) Sailfin molly DUPLICATION Sailfin molly MODERN SPECIES 3880 nop53 (ENSPLAG00000009285) ENSPLAG00000009298 ##35 ENSPLAG00000009314 ##35 Sailfin molly MODERN SPECIES 491 unk (ENSPLAG00000017785) ENSPLAG00000017719 ##35 ENSPLAG00000017715 zgc:194990 (ENSPLAG00000017667) itgb4 (ENSPLAG00000017592) sap30bp (ENSPLAG00000016882) ENSPLAG00000016874 CDR2L (ENSPLAG00000016870) ENSPLAG00000016861 MRPL58 (ENSPLAG00000016858) ENSPLAG00000016851 DAGLB (ENSPLAG00000016835) SPAG9 (ENSPLAG00000016801) tob1b (ENSPLAG00000016731) ENSPLAG00000016727 Ovalentaria_B ANCESTRAL SPECIES 7 ENSGT00940000153801.a ENSGT00940000159641 ENSGT00940000154852.a ENSGT00530000066748 ENSGT00940000159861 ENSGT00940000180121 ENSGT00940000171912 ENSGT00940000160173 ENSGT00940000158109 ENSGT00810000125570 ENSGT00940000160651 ENSGT00530000064671 ENSGT00940000159396 ENSGT00940000156610 ENSGT00390000000306 ENSGT01100000263504.a.b.a.b.a.a ##35 ENSGT00940000154307.A ENSGT00390000006068 ENSGT00390000017838 ENSGT00510000048359 ENSGT00390000014665 ENSGT00940000155267 ENSGT00940000160374 ENSGT00550000075088.a.a ENSGT00940000167095.A ENSGT00940000166841 ENSGT00940000154323.a ENSGT00940000160435 ENSGT00390000002866.a ENSGT00940000164729.a.b ENSGT00940000165156 Cichlidae ANCESTRAL SPECIES ENSGT01100000263504.a.b.a.b.a.a ##35 Pseudocrenilabrinae ANCESTRAL SPECIES ENSGT01100000263504.a.b.a.b.a.a ##35 Pseudocrenilabrinae_A ANCESTRAL SPECIES ENSGT01100000263504.a.b.a.b.a.a ##35 Haplochromini ANCESTRAL SPECIES ENSGT01100000263504.a.b.a.b.a.a ##35 Haplochromini_A ANCESTRAL SPECIES ENSGT01100000263504.a.b.a.b.a.a ##35 Haplochromini_B ANCESTRAL SPECIES 24 ENSGT00940000155698.B ENSGT00390000016895 ENSGT00730000111029.a ENSGT00940000166161 ENSGT00940000154322.B ENSGT00940000158269.f.a ENSGT00940000167859 ENSGT00730000111333.b ENSGT00390000008566.b ENSGT00390000013574 ENSGT00900000141125 ENSGT00940000162951 ENSGT00530000063718.a.a ENSGT00730000110939.b ENSGT00940000159360 ENSGT01100000263504.a.b.a.b.a.a ##35 ENSGT00940000167259 ENSGT00940000163587.a.b.a.c.b ENSGT01100000263555.b ENSGT00390000007870.l ENSGT00940000176223 ENSGT00390000018570.b.a ENSGT00940000167542 ENSGT00940000156486 ENSGT00940000153496.a.b.a ENSGT00940000154208.c.b ENSGT00940000158031.c ENSGT00940000163867 ENSGT00940000164726.b ENSGT00940000164900 ENSGT00940000169412 Eastern happy MODERN SPECIES 20 ENSACLG00000021537 ENSACLG00000021554 ENSACLG00000021573 ENSACLG00000021583 sox9a (ENSACLG00000021607) ENSACLG00000021636 ENSACLG00000021638 ENSACLG00000021659 FDXR (ENSACLG00000021672) ENSACLG00000021745 mrpl38 (ENSACLG00000021758) ENSACLG00000021779 wbp2 (ENSACLG00000021801) ENSACLG00000021847 unk (ENSACLG00000022043) ENSACLG00000022376 ##35 ENSACLG00000022399 zgc:194990 (ENSACLG00000022429) itgb4 (ENSACLG00000022478) sap30bp (ENSACLG00000022984) ENSACLG00000023008 CDR2L (ENSACLG00000023031) mrpl58 (ENSACLG00000023065) DAGLB (ENSACLG00000023087) SPAG9 (ENSACLG00000023098) tob1b (ENSACLG00000023247) ENSACLG00000023254 ENSACLG00000023302 ENSACLG00000023473 sult2st2 (ENSACLG00000023496) ENSACLG00000023516 Pomacentridae ANCESTRAL SPECIES 13 ENSGT00530000066748 ENSGT00940000159861 ENSGT00940000157969 ENSGT00940000171912 ENSGT00940000160173 ENSGT00940000158109 ENSGT00810000125570 ENSGT00940000160651 ENSGT00530000064671 ENSGT00940000159396 ENSGT00940000156610 ENSGT00390000000306 ENSGT01100000263504.a.b.a.a #22 ENSGT00940000154307.A ENSGT00390000006068 ENSGT01100000263504.a.b.a.b.a.a ##35 ENSGT00510000049652 ENSGT00390000017838 ENSGT00510000048359 ENSGT00390000014665 ENSGT00940000155267 ENSGT00940000160374 ENSGT00550000075088.a.a ENSGT00940000167095.A ENSGT00940000166841 ENSGT00940000154323.a ENSGT00940000160435 ENSGT00390000002866.a ENSGT00940000164729.a.b ENSGT00940000165156 ENSGT00940000168122 Bicolor damselfish MODERN SPECIES 2216 zgc:112496 (ENSSPAG00000016218) wdr24 (ENSSPAG00000016234) anks3 (ENSSPAG00000016270) zgc:112185 (ENSSPAG00000016304) h3f3d (ENSSPAG00000016333) ##35 ENSSPAG00000016319 ENSSPAG00000016353 ENSSPAG00000016367 ENSSPAG00000016372 gnptg (ENSSPAG00000016381) tsr3 (ENSSPAG00000016406) pdpk1b (ENSSPAG00000016432) kctd5a (ENSSPAG00000016484) ube2ia (ENSSPAG00000016501) ENSSPAG00000016521 ENSSPAG00000016536 ENSSPAG00000016569 phkg2 (ENSSPAG00000016582) RNF40 (ENSSPAG00000016622) ENSSPAG00000016701 Pomacentridae_A ANCESTRAL SPECIES ENSGT01100000263504.a.b.a.b.a.a ##35 Amphiprion ANCESTRAL SPECIES ENSGT01100000263504.a.b.a.b.a.a ##35 Orange clownfish MODERN SPECIES 6 ENSAPEG00000013301 ENSAPEG00000013285 ENSAPEG00000013267 ENSAPEG00000013254 ENSAPEG00000013235 ENSAPEG00000013223 ENSAPEG00000013183 ENSAPEG00000013172 ENSAPEG00000013144 ENSAPEG00000013126 ENSAPEG00000013110 ENSAPEG00000013019 jam3b (ENSAPEG00000012994) vps26bl (ENSAPEG00000012970) ARHGAP32 (ENSAPEG00000012706) ENSAPEG00000012567 ##35 crx (ENSAPEG00000012552) kptn (ENSAPEG00000012526) nova1 (ENSAPEG00000012502) capns1b (ENSAPEG00000012476) zgc:153990 (ENSAPEG00000012465) dlb (ENSAPEG00000012433) ppp1r14aa (ENSAPEG00000012424) ENSAPEG00000012388 MARK4 (ENSAPEG00000012325) ckma (ENSAPEG00000012285) nccrp1 (ENSAPEG00000012256) slc8a2a (ENSAPEG00000012198) hnrnpl (ENSAPEG00000012139) irf2bp1 (ENSAPEG00000012133) micu2 (ENSAPEG00000012118) Percomorphaceae_C ANCESTRAL SPECIES 14 ENSGT00940000153801.a ENSGT00940000159641 ENSGT00940000154852.a ENSGT00530000066748 ENSGT00940000159861 ENSGT00940000157969 ENSGT00940000171912 ENSGT00940000160173 ENSGT00940000158109 ENSGT00810000125570 ENSGT00940000160651 ENSGT00530000064671 ENSGT00940000159396 ENSGT00940000156610 ENSGT00390000000306 ENSGT01100000263504.a.b.a.b.a.a ##35 ENSGT01030000235280 ENSGT00940000154307.A ENSGT00390000006068 ENSGT00390000017838 ENSGT00510000048359 ENSGT00390000014665 ENSGT00940000155267 ENSGT00940000160374 ENSGT00550000075088.a.a ENSGT00940000167095.A ENSGT00940000166841 ENSGT00940000154323.a ENSGT00940000160435 ENSGT00390000002866.a ENSGT00650000094874 Eupercaria ANCESTRAL SPECIES 17 ENSGT00940000158679 ENSGT00940000153972.B ENSGT00940000158793 ENSGT00390000016247 ENSGT00940000159193 ENSGT01010000228854 ENSGT00940000155457.a.a.d ENSGT00390000013593 ENSGT00940000157231.a.a ENSGT00390000017627.b ENSGT00530000063534.b ENSGT00940000155900.i ENSGT00940000156937.a.a ENSGT00950000183064.a.b.a.b ENSGT00940000154313.c.a ENSGT01100000263504.a.b.a.b.a.a ##35 ENSGT00940000164977.a ENSGT00390000002548 ENSGT00940000155573.g.b ENSGT00940000155478.hb.b ENSGT00450000040324.a.a.a ENSGT00940000164418.a.b ENSGT00950000182985.a.b.a ENSGT01030000234613.b.b.h ENSGT00940000159555.v.b ENSGT00950000182772.A.a.a.b.r.a ENSGT00940000161313 ENSGT00940000158344.a.b ENSGT01030000234642.a.b.b.d.b.c.b ENSGT00940000162120.f.a ENSGT00950000183079.A.b.c.b Eupecaria_A ANCESTRAL SPECIES ENSGT01100000263504.a.b.a.b.a.a ##35 Eupecaria_B ANCESTRAL SPECIES ENSGT01100000263504.a.b.a.b.a.a ##35 Perciformes ANCESTRAL SPECIES ENSGT01100000263504.a.b.a.b.a.a ##35 Perciformes_a ANCESTRAL SPECIES ENSGT01100000263504.a.b.a.b.a.a ##35 Pike perch MODERN SPECIES 25 ntm (ENSSLUG00000010320) opcml (ENSSLUG00000010326) PANX3 (ENSSLUG00000010328) pknox2 (ENSSLUG00000010333) tmem218 (ENSSLUG00000010339) ENSSLUG00000010343 ENSSLUG00000010347 robo3 (ENSSLUG00000010367) MSANTD2 (ENSSLUG00000010434) esama (ENSSLUG00000010438) fez1 (ENSSLUG00000010446) cfap58 (ENSSLUG00000010462) IGSF9B (ENSSLUG00000010484) jam3b (ENSSLUG00000010511) vps26bl (ENSSLUG00000010523) ENSSLUG00000010540 ##35 crx (ENSSLUG00000010543) kptn (ENSSLUG00000010558) nova1 (ENSSLUG00000010622) capns1b (ENSSLUG00000010645) zgc:153990 (ENSSLUG00000010699) dlb (ENSSLUG00000010711) ppp1r14aa (ENSSLUG00000010783) ENSSLUG00000010790 MARK4 (ENSSLUG00000010828) ckma (ENSSLUG00000011167) ENSSLUG00000011192 nccrp1 (ENSSLUG00000011197) slc8a2a (ENSSLUG00000011208) hnrnpl (ENSSLUG00000011278) irf2bp1 (ENSSLUG00000011361) Eupecaria_C ANCESTRAL SPECIES ENSGT01100000263504.a.b.a.b.a.a ##35 Eupercaria_incertae_sedis ANCESTRAL SPECIES ENSGT01100000263504.a.b.a.b.a.a ##35 European seabass MODERN SPECIES 11 rab11fip3 (ENSDLAG00005030794) decr2 (ENSDLAG00005006319) ENSDLAG00005006310 ENSDLAG00005026837 ENSDLAG00005006281 ENSDLAG00005006214 ENSDLAG00005006125 WDR90 (ENSDLAG00005005444) H10 (ENSDLAG00005032394) rhot2 (ENSDLAG00005005082) rhbdl1 (ENSDLAG00005005040) zgc:112496 (ENSDLAG00005005028) wdr24 (ENSDLAG00005005008) anks3 (ENSDLAG00005004974) zgc:112185 (ENSDLAG00005004961) h3f3d (ENSDLAG00005004948) ##35 ENSDLAG00005034972 ENSDLAG00005030251 ENSDLAG00005004760 ENSDLAG00005003673 ENSDLAG00005031692 UBE2I (ENSDLAG00005003573) ENSDLAG00005003559 ENSDLAG00005003355 PHKG2 (ENSDLAG00005002972) ENSDLAG00005001929 ENSDLAG00005001884 ENSDLAG00005001875 znf668 (ENSDLAG00005001872) ENSDLAG00005001825 ENSDLAG00005001804 Tetraodontidae ANCESTRAL SPECIES 28 ENSGT01050000244814.a.a.b.b.b.b.b ENSGT00940000166369.h ENSGT00940000158679 ENSGT00940000153972.B ENSGT00940000158793 ENSGT00390000016247 ENSGT00940000159193 ENSGT00940000155457.a.a.d ENSGT00390000013593 ENSGT00940000157231.a.a ENSGT00390000017627.b ENSGT00530000063534.b ENSGT00940000156937.a.a ENSGT00950000183064.a.b.a.b ENSGT00940000154313.c.a ENSGT01100000263504.a.b.a.b.a.a ##35 ENSGT00940000164977.a ENSGT00390000002548 ENSGT00940000155573.g.b ENSGT00940000155478.hb.b ENSGT00450000040324.a.a.a ENSGT00940000164418.a.b ENSGT00950000182985.a.b.a ENSGT01030000234613.b.b.h ENSGT00950000183166.a.a.a.b.e.b ENSGT00390000015991 ENSGT00390000007230.a ENSGT00940000154203 ENSGT00940000156740 ENSGT00940000170767.a ENSGT00390000013680.b.a Fugu MODERN SPECIES 6 ENSTRUG00000027471 ntm (ENSTRUG00000003322) opcml (ENSTRUG00000001933) PANX3 (ENSTRUG00000002620) pknox2 (ENSTRUG00000003012) tmem218 (ENSTRUG00000025422) ENSTRUG00000003598 robo3 (ENSTRUG00000003711) MSANTD2 (ENSTRUG00000022314) esama (ENSTRUG00000020360) fez1 (ENSTRUG00000005144) cfap58 (ENSTRUG00000005415) jam3b (ENSTRUG00000022482) vps26bl (ENSTRUG00000021252) ARHGAP32 (ENSTRUG00000006062) ENSTRUG00000019983 ##35 crx (ENSTRUG00000006365) kptn (ENSTRUG00000006466) nova1 (ENSTRUG00000019498) capns1b (ENSTRUG00000006704) zgc:153990 (ENSTRUG00000006897) dlb (ENSTRUG00000006928) ppp1r14aa (ENSTRUG00000022620) ENSTRUG00000007139 tiprl (ENSTRUG00000007391) cltca (ENSTRUG00000007501) ptrh2 (ENSTRUG00000008299) VMP1 (ENSTRUG00000031097) RPS6KB1 (ENSTRUG00000008385) rnft1 (ENSTRUG00000008753) ENSTRUG00000008847 Tetraodon MODERN SPECIES 22 bsx (ENSTNIG00000008603) lim2.1 (ENSTNIG00000008604) ntm (ENSTNIG00000008605) opcml (ENSTNIG00000008606) PANX3 (ENSTNIG00000008607) pknox2 (ENSTNIG00000008608) ENSTNIG00000000367 tmem218 (ENSTNIG00000000479) ENSTNIG00000008609 ENSTNIG00000008610 fez1 (ENSTNIG00000004486) cfap58 (ENSTNIG00000005100) ENSTNIG00000005142 vps26bl (ENSTNIG00000011629) ARHGAP32 (ENSTNIG00000011630) ENSTNIG00000011631 ##35 crx (ENSTNIG00000011632) kptn (ENSTNIG00000011633) nova1 (ENSTNIG00000011634) zgc:153990 (ENSTNIG00000011635) ENSTNIG00000011636 rnft1 (ENSTNIG00000011637) ENSTNIG00000011638 ENSTNIG00000009033 med13a (ENSTNIG00000011639) ints2 (ENSTNIG00000011640) AUTS2 (ENSTNIG00000004427) cxadr (ENSTNIG00000004428) uvrag (ENSTNIG00000003753) Percomorphaceae_D ANCESTRAL SPECIES 13 ENSGT00440000033742.a.a ENSGT00940000153801.a ENSGT00940000159641 ENSGT00940000154852.a ENSGT00530000066748 ENSGT00940000159861 ENSGT00940000157969 ENSGT00940000160173 ENSGT00940000158109 ENSGT00810000125570 ENSGT00940000160651 ENSGT00530000064671 ENSGT00940000159396 ENSGT00940000156610 ENSGT00390000000306 ENSGT01100000263504.a.b.a.b.a.a ##35 ENSGT01030000235280 ENSGT00940000154307.A ENSGT00390000006068 ENSGT00390000017838 ENSGT00510000048359 ENSGT00390000014665 ENSGT00940000155267 ENSGT00940000160374 ENSGT00550000075088.a.a ENSGT00940000167095.A ENSGT00940000166841 ENSGT00940000154323.a ENSGT00940000160435 ENSGT00390000002866.a ENSGT00940000164729.a.b Carangaria ANCESTRAL SPECIES 13 ENSGT00440000033742.a.a ENSGT00940000153801.a ENSGT00940000159641 ENSGT00940000154852.a ENSGT00530000066748 ENSGT00940000159861 ENSGT00940000157969 ENSGT00940000160173 ENSGT00940000158109 ENSGT00810000125570 ENSGT00940000160651 ENSGT00530000064671 ENSGT00940000159396 ENSGT00940000156610 ENSGT00390000000306 ENSGT01100000263504.a.b.a.b.a.a ##35 ENSGT00940000154307.A ENSGT00390000006068 ENSGT00390000017838 ENSGT00510000048359 ENSGT00390000014665 ENSGT00940000155267 ENSGT00940000160374 ENSGT00550000075088.a.a ENSGT00940000167095.A ENSGT00940000166841 ENSGT00940000154323.a ENSGT00940000160435 ENSGT00390000002866.a ENSGT00940000164729.a.b ENSGT00940000165156 Carangaria_A ANCESTRAL SPECIES 5 ENSGT00440000033742.a.a ENSGT00940000153801.a ENSGT00940000159641 ENSGT00940000154852.a ENSGT00530000066748 ENSGT00940000159861 ENSGT00940000157969 ENSGT00940000160173 ENSGT00940000158109 ENSGT00810000125570 ENSGT00940000160651 ENSGT00530000064671 ENSGT00940000159396 ENSGT00940000156610 ENSGT00390000000306 ENSGT01100000263504.a.b.a.b.a.a ##35 ENSGT00510000049652 ENSGT00940000154307.A ENSGT00390000006068 ENSGT00390000017838 ENSGT00510000048359 ENSGT00390000014665 ENSGT00940000155267 ENSGT00940000160374 ENSGT00550000075088.a.a ENSGT00940000167095.A ENSGT00940000166841 ENSGT00940000154323.a ENSGT00940000160435 ENSGT00390000002866.a ENSGT00940000164729.a.b Seriola ANCESTRAL SPECIES 1 ENSGT00440000033742.a.a ENSGT00940000153801.a ENSGT00940000159641 ENSGT00940000154852.a ENSGT00530000066748 ENSGT00940000159861 ENSGT00940000157969 ENSGT00940000160173 ENSGT00940000158109 ENSGT00810000125570 ENSGT00940000160651 ENSGT00530000064671 ENSGT00940000159396 ENSGT00940000156610 ENSGT00390000000306 ENSGT01100000263504.a.b.a.b.a.a ##35 ENSGT00940000154307.A ENSGT00390000006068 ENSGT00390000017838 ENSGT00510000048359 ENSGT00390000014665 ENSGT00940000155267 ENSGT00940000160374 ENSGT00550000075088.a.a ENSGT00940000167095.A ENSGT00940000166841 ENSGT00940000154323.a ENSGT00940000160435 ENSGT00390000002866.a ENSGT00940000164729.a.b ENSGT00940000165156 Greater amberjack MODERN SPECIES 27 decr2 (ENSSDUG00000001591) RDH13 (ENSSDUG00000001644) SBK1 (ENSSDUG00000001677) ENSSDUG00000001691 NLRC3 (ENSSDUG00000001713) NLRC3 (ENSSDUG00000001738) ENSSDUG00000001794 WDR90 (ENSSDUG00000001847) rhot2 (ENSSDUG00000002135) h1-0 (ENSSDUG00000002166) rhbdl1 (ENSSDUG00000002186) zgc:112496 (ENSSDUG00000002208) wdr24 (ENSSDUG00000002242) anks3 (ENSSDUG00000002292) zgc:112185 (ENSSDUG00000002307) h3f3d (ENSSDUG00000002317) ##35 ENSSDUG00000002331 ENSSDUG00000002343 gnptg (ENSSDUG00000002350) tsr3 (ENSSDUG00000002376) pdpk1b (ENSSDUG00000002401) kctd5a (ENSSDUG00000002442) ube2ia (ENSSDUG00000002471) ENSSDUG00000002502 ENSSDUG00000002512 ccdc189 (ENSSDUG00000002535) phkg2 (ENSSDUG00000002554) RNF40 (ENSSDUG00000002602) ENSSDUG00000002675 znf668 (ENSSDUG00000002686) ENSSDUG00000002695 Anabantaria ANCESTRAL SPECIES 9 ENSGT00390000006095 ENSGT00940000157522 ENSGT00940000156342.d ENSGT00940000161398.e ENSGT00940000164578.a.a ENSGT00390000004360.a.a ENSGT00950000183115.a.a.a ENSGT00950000183136.b.b.d ENSGT00940000160281 ENSGT00940000161057 ENSGT00940000154866.A ENSGT00940000157514.a ENSGT00940000160500 ENSGT01090000260005.a.b.a.b.b.i ENSGT00390000017267 ENSGT01100000263504.a.b.a.b.a.a ##35 ENSGT00940000164977.b ENSGT00550000074807.c ENSGT00390000001278.a ENSGT00940000153792.A ENSGT00940000156265 ENSGT00940000160533 ENSGT00530000064222.a ENSGT00940000158965 ENSGT00940000160957 ENSGT00940000165302 ENSGT00940000160692 ENSGT01030000234592.A.b.a ENSGT00390000017365.b ENSGT00940000159302 ENSGT00940000165141.a Anabantoidei ANCESTRAL SPECIES 14 ENSGT00390000006095 ENSGT00940000157522 ENSGT00940000156342.d ENSGT00940000161398.e ENSGT00940000164578.a.a ENSGT00390000004360.a.a ENSGT00950000183115.a.a.a ENSGT00950000183136.b.b.d ENSGT00940000160281 ENSGT00940000161057 ENSGT00940000154866.A ENSGT00940000157514.a ENSGT00940000160500 ENSGT01090000260005.a.b.a.b.b.i ENSGT00390000017267 ENSGT01100000263504.a.b.a.b.a.a ##35 ENSGT00940000164977.b ENSGT00550000074807.c ENSGT00390000001278.a ENSGT00940000153792.A ENSGT00940000156265 ENSGT00940000160533 ENSGT00530000064222.a ENSGT00940000158965 ENSGT00940000160957 ENSGT00940000165302 ENSGT00940000160692 ENSGT01030000234592.A.b.a ENSGT00390000017365.b ENSGT00940000159302 ENSGT00940000165141.a Climbing perch DUPLICATION Climbing perch MODERN SPECIES 5 opcml (ENSATEG00000016746) ENSATEG00000015491 ENSATEG00000016834 pknox2 (ENSATEG00000016848) tmem218 (ENSATEG00000016868) ENSATEG00000016878 robo3 (ENSATEG00000016929) ENSATEG00000016962 esama (ENSATEG00000016998) fez1 (ENSATEG00000017013) ENSATEG00000017054 IGSF9B (ENSATEG00000017250) ENSATEG00000026696 VPS26B (ENSATEG00000025542) ENSATEG00000017355 ENSATEG00000017457 ##35 ENSATEG00000017467 ENSATEG00000017505 nova1 (ENSATEG00000025682) capns1a (ENSATEG00000017593) zgc:153990 (ENSATEG00000017609) dlb (ENSATEG00000017617) ppp1r14aa (ENSATEG00000025902) ENSATEG00000017678 ENSATEG00000017713 ckma (ENSATEG00000017761) ENSATEG00000017784 nccrp1 (ENSATEG00000017793) slc8a2a (ENSATEG00000000055) hnrnpl (ENSATEG00000000129) ENSATEG00000029648 Climbing perch MODERN SPECIES 4 MRPS22 (ENSATEG00000021646) PIK3CB (ENSATEG00000021657) ENSATEG00000021691 ENSATEG00000021709 ENSATEG00000025611 ENSATEG00000021754 ITM2C (ENSATEG00000021766) ENSATEG00000021777 ENSATEG00000021783 meis3 (ENSATEG00000021799) ENSATEG00000021821 sirt2 (ENSATEG00000028072) dmac2 (ENSATEG00000021845) ENSATEG00000021854 nop53 (ENSATEG00000021860) ENSATEG00000026782 ##35 ENSATEG00000021878 ENSATEG00000021886 ENSATEG00000030000 sars2 (ENSATEG00000021919) si:dkey-260j18.2 (ENSATEG00000021944) slc5a2 (ENSATEG00000021955) fbxo46 (ENSATEG00000021969) numbl (ENSATEG00000021980) ENSATEG00000022033 dpf1 (ENSATEG00000022056) ENSATEG00000022068 ENSATEG00000022086 ENSATEG00000022170 ENSATEG00000022235 ENSATEG00000022294 Protacanthopterygii ANCESTRAL SPECIES 81 ENSGT00940000171017 ENSGT00940000158415 ENSGT00390000015655.a.m.a ENSGT00940000156648.c.b ENSGT00940000156155 ENSGT00940000156536.e.b ENSGT00390000009497.b ENSGT00940000155350.g ENSGT00940000156251.a ENSGT00950000182988.a.b.a ENSGT00530000063816.c.b ENSGT00390000010063 ENSGT00530000064411.b ENSGT00390000008610.a.b.b.b ENSGT00510000046732.A.c ENSGT01100000263504.a.b.a.b.a.a ##35 ENSGT00940000164977.a ENSGT00390000002548 ENSGT00940000155573.g.b ENSGT00510000048626 ENSGT00940000155478.hb.b ENSGT00450000040324.a.a.a ENSGT00940000166947 ENSGT00940000164418.a.b ENSGT00950000182985.a.b.a ENSGT01030000234613.b.b.h ENSGT00940000159555.v.b.c ENSGT00940000161313 ENSGT00940000158344.a.b ENSGT00910000144115.b.dc.a ENSGT01030000234642.a.b.b.d.b.c.b Salmoninae ANCESTRAL SPECIES 331 ENSGT00730000110939.b.j ENSGT00940000159360.b ENSGT01100000263504.a.a.pb ##35 ENSGT00940000163587.a.b.a.c.b.f ENSGT01100000263555.b.g.b ENSGT00390000007870.n ENSGT01000000216149.a ENSGT00390000018570.b.a.a ENSGT00940000157510.a ENSGT00940000155709.i.d ENSGT00940000162720.b.a.a.a ENSGT00940000156854.s.y ENSGT00940000156854.s.z.a ENSGT00950000182979.a.b.b.b.a.c.d ENSGT00940000154744.a.b.i ENSGT01100000263504.a.b.a.b.a.a ##35 ENSGT00940000167259 ENSGT00940000163587.a.b.a.c.b.e ENSGT01100000263555.b.g.a ENSGT00390000007870.m ENSGT01000000216149.b ENSGT00390000018570.b.a.b ENSGT00390000013268 ENSGT00940000157510.b ENSGT00940000155709.i.c ENSGT00940000156854.s.z.b.b ENSGT00940000154076.C.d ENSGT00950000182979.a.b.b.b.a.c.c ENSGT00940000154744.a.b.j ENSGT00390000014667 Salmoninae_a ANCESTRAL SPECIES 45 ENSGT00940000159664.f.a ENSGT00940000156819.a.b.j ENSGT01030000234534.C ENSGT00390000005895.g ENSGT00390000014852.a ENSGT00390000004691.g ENSGT00940000153514.a.b.q.b ENSGT00390000013574 ENSGT00940000162951 ENSGT00530000063718.a.a.q ENSGT00730000110939.b.i ENSGT00940000159360.a ENSGT01100000263504.a.b.a.a #22 ENSGT00940000164977.a.b ENSGT00390000002548.i ENSGT01100000263504.a.b.a.b.a.a ##35 ENSGT00940000167259 ENSGT00940000163587.a.b.a.c.b.e ENSGT01100000263555.b.g.a ENSGT00390000007870.m ENSGT01000000216149.b ENSGT00390000018570.b.a.b ENSGT00390000013268 ENSGT00940000157510.b ENSGT00940000155709.i.c ENSGT00940000162720.b.a.a.a.b ENSGT00940000156854.s.y ENSGT00940000154076.C.d ENSGT00950000182979.a.b.b.b.a.c.c ENSGT00940000154744.a.b.j ENSGT00390000014667 Salmo ANCESTRAL SPECIES 3 ENSGT00950000183187.B ENSGT00940000162710.c.b.m ENSGT00940000159664.f.b ENSGT00940000156819.a.b.k ENSGT00970000193647 ENSGT01010000224947.B ENSGT00940000157017.a.b.a ENSGT00390000004691.h ENSGT00940000153514.a.b.q.a ENSGT00940000165867.A ENSGT00900000141125 ENSGT01080000259546 ENSGT00530000063718.a.a.r ENSGT00730000110939.b.j ENSGT00940000159360.b ENSGT01100000263504.a.b.a.b.a.a ##35 ENSGT00940000163587.a.b.a.c.b.f ENSGT01100000263555.b.g.b ENSGT00390000007870.n ENSGT01000000216149.a ENSGT00390000018570.b.a.a ENSGT00940000157510.a ENSGT00940000155709.i.d ENSGT00940000162720.b.a.a.a.a ENSGT00940000156854.s.z.b.a ENSGT00940000156854.s.z.a ENSGT00950000182979.a.b.b.b.a.c.d ENSGT00940000154744.a.b.i ENSGT00940000156268.a.b.r ENSGT00940000166074.B ENSGT00940000158127.h River trout MODERN SPECIES 11 ENSSTUG00000015501 ENSSTUG00000015491 CACNA1G (ENSSTUG00000010667) ENSSTUG00000010554 ENSSTUG00000010541 ENSSTUG00000010535 UTS2R (ENSSTUG00000010528) cybc1 (ENSSTUG00000010516) narf (ENSSTUG00000010427) ENSSTUG00000010405 mrpl38 (ENSSTUG00000010351) ENSSTUG00000010335 wbp2 (ENSSTUG00000010320) UNC13D (ENSSTUG00000010200) unk (ENSSTUG00000010163) ENSSTUG00000010147 ##35 zgc:194990 (ENSSTUG00000010139) itgb4 (ENSSTUG00000005444) sap30bp (ENSSTUG00000005276) CDR2L (ENSSTUG00000005259) wdr45b (ENSSTUG00000005218) foxk2a (ENSSTUG00000005097) ENSSTUG00000005088 SHISA6 (ENSSTUG00000005054) ENSSTUG00000005048 ENSSTUG00000005024 map2k4b (ENSSTUG00000003903) ENSSTUG00000003850 gas7a (ENSSTUG00000003199) rcvrnb (ENSSTUG00000003172) ENSSTUG00000003137 Atlantic salmon DUPLICATION Atlantic salmon MODERN SPECIES 12 ENSSSAG00000110379 ENSSSAG00000057098 ENSSSAG00000057129 actn4 (ENSSSAG00000056108) ENSSSAG00000094654 ENSSSAG00000109272 ENSSSAG00000090587 ech1 (ENSSSAG00000082032) ENSSSAG00000053130 meis3 (ENSSSAG00000105888) rinl (ENSSSAG00000053056) sirt2 (ENSSSAG00000052791) ENSSSAG00000121281 nop53 (ENSSSAG00000052779) h3f3a (ENSSSAG00000089325) #22 h3f3a (ENSSSAG00000052774) ##35 ENSSSAG00000052766 ENSSSAG00000052764 ENSSSAG00000052749 ENSSSAG00000103032 sars2 (ENSSSAG00000120889) si:dkey-260j18.2 (ENSSSAG00000084907) slc5a2 (ENSSSAG00000052423) fbxo46 (ENSSSAG00000115363) coq8b (ENSSSAG00000048832) numbl (ENSSSAG00000119287) ENSSSAG00000041640 dpf1 (ENSSSAG00000088639) ENSSSAG00000019907 ##35 ENSSSAG00000042480 ENSSSAG00000109714 Atlantic salmon MODERN SPECIES 20 ENSSSAG00000058422 ENSSSAG00000058778 ENSSSAG00000063842 ENSSSAG00000086177 ENSSSAG00000009677 ENSSSAG00000006682 uts2r2 (ENSSSAG00000063972) HEXD (ENSSSAG00000063996) CYBC1 (ENSSSAG00000064025) narf (ENSSSAG00000064048) ENSSSAG00000064096 ENSSSAG00000065042 wbp2 (ENSSSAG00000006591) ENSSSAG00000065074 ENSSSAG00000065147 h3f3a (ENSSSAG00000121955) ##35 ENSSSAG00000065335 zgc:194990 (ENSSSAG00000083474) itgb4 (ENSSSAG00000065365) sap30bp (ENSSSAG00000065765) ENSSSAG00000106640 ENSSSAG00000098604 ENSSSAG00000065783 ENSSSAG00000076637 ENSSSAG00000065815 ENSSSAG00000111936 ENSSSAG00000107904 ENSSSAG00000065882 ENSSSAG00000066387 ENSSSAG00000107901 adprm (ENSSSAG00000066668) Oncorhynchus ANCESTRAL SPECIES 26 ENSGT00940000160906.c ENSGT00950000183187.B ENSGT00940000162710.c.b ENSGT00940000159664.f.b ENSGT00940000156819.a.b.k ENSGT00940000157017.a.b.a ENSGT00390000005895.h ENSGT00390000004691.h ENSGT00940000153514.a.b.q.a ENSGT00940000165867.A ENSGT00900000141125.i ENSGT01080000259546 ENSGT00530000063718.a.a.r ENSGT00730000110939.b.j ENSGT00940000159360.b ENSGT01100000263504.a.b.a.b.a.a ##35 ENSGT01100000263504.a.b.a.b.a.b ##35 ENSGT01030000235280 ENSGT00940000163587.a.b.a.c.b.f ENSGT01100000263555.b.g.b ENSGT00390000007870.n ENSGT01000000216149.a.a.a ENSGT01000000216149.a.b ENSGT00390000018570.b.a.a ENSGT00940000157510.a ENSGT00940000155709.i.d ENSGT00940000162720.b.a.a.a.a ENSGT00940000156854.s.z.a ENSGT00950000182979.a.b.b.b.a.c.d ENSGT00940000154744.a.b.i ENSGT00940000156268.a.b.r Oncorhynchus_a ANCESTRAL SPECIES 21 ENSGT00950000182906.a.a.b.g ENSGT00940000160906.c ENSGT00950000183187.B ENSGT00940000162710.c.b ENSGT00940000159664.f.b ENSGT00940000156819.a.b.k ENSGT00940000157017.a.b.a ENSGT00390000004691.h ENSGT00940000153514.a.b.q.a ENSGT00940000165867.A ENSGT00900000141125.i ENSGT01080000259546 ENSGT00530000063718.a.a.r ENSGT00730000110939.b.j ENSGT00940000159360.b ENSGT01100000263504.a.b.a.b.a.a ##35 ENSGT00940000163587.a.b.a.c.b.f ENSGT01100000263555.b.g.b ENSGT00390000007870.n ENSGT01000000216149.a.a.a ENSGT00390000018570.b.a.a ENSGT00940000157510.a ENSGT00940000155709.i.d ENSGT00940000162720.b.a.a.a.a ENSGT00940000156854.s.z.a ENSGT00950000182979.a.b.b.b.a.c.d ENSGT00940000154744.a.b.i ENSGT00940000156268.a.b.r ENSGT00940000166074.B ENSGT00940000158127.h ENSGT01050000244814.a.b.a.g Coho salmon MODERN SPECIES 12 ENSOKIG00005015632 ENSOKIG00005014120 ENSOKIG00005014042 ENSOKIG00005014035 ENSOKIG00005014019 ENSOKIG00005014001 UTS2R (ENSOKIG00005013993) CYBC1 (ENSOKIG00005013990) ENSOKIG00005013960 ENSOKIG00005013951 mrpl38 (ENSOKIG00005013943) ENSOKIG00005013933 WBP2 (ENSOKIG00005013926) UNC13D (ENSOKIG00005013848) UNK (ENSOKIG00005013761) ENSOKIG00005013734 ##35 zgc:194990 (ENSOKIG00005013723) ITGB4 (ENSOKIG00005009697) sap30bp (ENSOKIG00005009512) ENSOKIG00005009502 CDR2L (ENSOKIG00005009498) ENSOKIG00005009462 foxk2a (ENSOKIG00005009256) ENSOKIG00005009235 ENSOKIG00005009226 SHISA6 (ENSOKIG00005009215) ENSOKIG00005009171 ENSOKIG00005009167 ENSOKIG00005009153 ENSOKIG00005009147 ENSOKIG00005009137 Rainbow trout DUPLICATION Rainbow trout MODERN SPECIES 3 ENSOMYG00000072496 slc35f2 (ENSOMYG00000005785) ENSOMYG00000005684 ompb (ENSOMYG00000005437) CAPN5 (ENSOMYG00000005341) ENSOMYG00000072789 MYO7A (ENSOMYG00000004675) ENSOMYG00000056202 GDPD4 (ENSOMYG00000003888) ENSOMYG00000003825 ENSOMYG00000003794 ENSOMYG00000003707 ENSOMYG00000003572 ENSOMYG00000003495 ENSOMYG00000077580 ENSOMYG00000058244 ##35 ENSOMYG00000070407 ENSOMYG00000003312 nova1 (ENSOMYG00000003195) alkbh6 (ENSOMYG00000003168) ENSOMYG00000069295 ENSOMYG00000065368 ENSOMYG00000045205 dlb (ENSOMYG00000064695) ppp1r14aa (ENSOMYG00000077245) ENSOMYG00000045193 ENSOMYG00000045153 ENSOMYG00000045135 ckma (ENSOMYG00000045128) ENSOMYG00000045108 ENSOMYG00000049659 Rainbow trout MODERN SPECIES 12 tob1b (ENSOMYG00000019699) ENSOMYG00000019694 ENSOMYG00000019307 ENSOMYG00000018815 ENSOMYG00000018747 kdelr2b (ENSOMYG00000018731) ENSOMYG00000018724 ENSOMYG00000018686 ENSOMYG00000018665 polr3e (ENSOMYG00000018552) h1-0 (ENSOMYG00000071351) ENSOMYG00000018518 ENSOMYG00000018493 wdr24 (ENSOMYG00000018447) ENSOMYG00000018427 ENSOMYG00000051420 ##35 ENSOMYG00000017047 ENSOMYG00000016958 ENSOMYG00000065629 ENSOMYG00000016895 ENSOMYG00000016612 ENSOMYG00000059562 ENSOMYG00000016579 ENSOMYG00000016572 ENSOMYG00000015597 ENSOMYG00000015441 ENSOMYG00000015427 ENSOMYG00000015376 dcun1d3 (ENSOMYG00000015352) lyrm1 (ENSOMYG00000015344) ENSOMYG00000015340 Rainbow trout MODERN SPECIES 1 ENSOMYG00000002427 elmod1 (ENSOMYG00000072212) ENSOMYG00000002671 CAPN5 (ENSOMYG00000002761) MYO7A (ENSOMYG00000004362) GDPD4 (ENSOMYG00000005865) ENSOMYG00000060615 ENSOMYG00000005887 ENSOMYG00000005939 ENSOMYG00000005978 ENSOMYG00000006097 ENSOMYG00000060501 ENSOMYG00000006287 ENSOMYG00000006448 ENSOMYG00000006490 ENSOMYG00000006507 ##35 ENSOMYG00000006535 nova1 (ENSOMYG00000006831) ENSOMYG00000006889 zgc:153990 (ENSOMYG00000006899) ENSOMYG00000006924 dlb (ENSOMYG00000006961) CKM (ENSOMYG00000007272) ENSOMYG00000006984 ppp1r14aa (ENSOMYG00000061359) ENSOMYG00000007158 ENSOMYG00000007181 ckma (ENSOMYG00000066323) ENSOMYG00000052806 nccrp1 (ENSOMYG00000007311) slc8a2a (ENSOMYG00000008190) Otomorpha ANCESTRAL SPECIES 132 ENSGT00940000154852.a ENSGT00530000066748 ENSGT00940000159861 ENSGT00390000008957 ENSGT00940000160173 ENSGT00940000158109 ENSGT00810000125570 ENSGT00940000160651 ENSGT00530000064671 ENSGT00940000159396 ENSGT00940000156610 ENSGT00390000000306 ENSGT01100000263504.a.b.a.a #22 ENSGT01100000263504.a.b.a.b.a.a ##35 ENSGT01100000263504.a.b.a.b.a.b ##35 ENSGT00510000049652 ENSGT00940000154307.A ENSGT00390000017838 ENSGT00940000159641 ENSGT00940000153801.a ENSGT00440000033742.a.a ENSGT00390000006698 ENSGT00940000153417.A ENSGT00390000015528 ENSGT00940000160069 ENSGT00390000013678 ENSGT00390000001390.b ENSGT00530000063870.b ENSGT01100000263515.a.b.a.b.a.h Otophysi ANCESTRAL SPECIES 112 ENSGT00940000154852.a ENSGT00530000066748 ENSGT00940000159861 ENSGT00390000008957 ENSGT00940000160173 ENSGT00940000158109 ENSGT00810000125570 ENSGT00940000160651 ENSGT00530000064671 ENSGT00940000159396 ENSGT00940000156610 ENSGT00390000000306 ENSGT01100000263504.a.b.a.a #22 ENSGT01100000263504.a.b.a.b.a.a ##35 ENSGT01100000263504.a.b.a.b.a.b ##35 ENSGT00510000049652 ENSGT00940000154307.A ENSGT00390000017838 ENSGT00940000159641 ENSGT00940000153801.a ENSGT00440000033742.a.a ENSGT00390000006698 ENSGT00390000015528 ENSGT00940000153417.A ENSGT00390000013678 ENSGT00390000001390.b ENSGT00530000063870.b ENSGT01100000263515.a.b.a.b.a.h ENSGT00930000151045.f Characiphysae ANCESTRAL SPECIES ENSGT01100000263504.a.b.a.b.a.a ##35 Characiphysae_b ANCESTRAL SPECIES ENSGT01100000263504.a.b.a.b.a.a ##35 Characoidei ANCESTRAL SPECIES ENSGT01100000263504.a.b.a.b.a.a ##35 Red-bellied piranha MODERN SPECIES 130 IGFALS (ENSPNAG00000010310) UNKL (ENSPNAG00000010422) ENSPNAG00000010461 ##35 gper1 (ENSPNAG00000010476) gpr146 (ENSPNAG00000010485) BAIAP3 (ENSPNAG00000010517) ube2ia (ENSPNAG00000010538) il21r.1 (ENSPNAG00000010551) ENSPNAG00000010563 pdpk1a (ENSPNAG00000001415) kctd5a (ENSPNAG00000010648) USP31 (ENSPNAG00000010699) hs3st2 (ENSPNAG00000010709) hs3st4 (ENSPNAG00000010734) kdm8 (ENSPNAG00000010769) nsmce1 (ENSPNAG00000010784) ENSPNAG00000010797 ENSPNAG00000010848 Cyprinoidei ANCESTRAL SPECIES 46 ENSGT00940000159788.a.a ENSGT00940000175510 ENSGT00940000160550 ENSGT00940000159869 ENSGT00940000159005.c.a.b ENSGT00940000157696 ENSGT00550000075071 ENSGT00390000002628 ENSGT01100000263632 ENSGT00950000182979.a.b.b.b.b.i.a ENSGT00940000163663.B.a ENSGT00940000160824 ENSGT00940000176030 ENSGT00940000158822 ENSGT01100000263504.a.b.a.a #22 ENSGT01100000263504.a.b.a.b.a.a ##35 ENSGT00390000001474 ENSGT00390000008920.c.b ENSGT00940000159702 ENSGT00550000074807.c ENSGT00940000161634 ENSGT00940000160308 ENSGT00390000007686.a ENSGT00390000000417.a.a.b.b ##11 ENSGT01100000263504.a.b.a.b.a.b ##35 ENSGT00940000154307.B Zebrafish MODERN SPECIES 16 pdpk1b (ENSDARG00000018285) tsr3 (ENSDARG00000038567) gnptg (ENSDARG00000038566) SBK1 (ENSDARG00000056294) ENSDARG00000092499 NLRC3 (ENSDARG00000103146) cluap1 (ENSDARG00000079110) WDR90 (ENSDARG00000079241) rhot2 (ENSDARG00000056328) h1-0 (ENSDARG00000038559) rhbdl1 (ENSDARG00000087040) zgc:112496 (ENSDARG00000004274) wdr24 (ENSDARG00000025507) anks3 (ENSDARG00000038557) zgc:112185 (ENSDARG00000038556) h3f3d (ENSDARG00000045248) ##35 ENSDARG00000100025 ENSDARG00000045254 decr2 (ENSDARG00000045257) rab11fip3 (ENSDARG00000016490) telo2 (ENSDARG00000000830) IFT140 (ENSDARG00000031886) tmem204 (ENSDARG00000045273) ENSDARG00000030095 metrn (ENSDARG00000030367) ENSDARG00000087663 ENSDARG00000071454 crp2 (ENSDARG00000056462) crp3 (ENSDARG00000042613) ENSDARG00000056498 ENSDARG00000095730 Cyprininae ANCESTRAL SPECIES 301 ENSGT00940000160824.b.a.a ENSGT00940000176030 ENSGT00940000158822.c ENSGT01100000263504.a.b.a.a #22 ENSGT01100000263504.a.b.a.b.a.a ##35 ENSGT00940000154307.B.e ENSGT01060000248742.f ENSGT00730000110939.a.c.b ENSGT00550000075088.a.a.d ENSGT00510000049239.b.b.a ENSGT00940000167095.B ENSGT00940000155267.t.b ENSGT00940000160374.d.b.a ENSGT00940000156355.n.a.a ENSGT00940000160498.c.g ENSGT00940000161466.e ENSGT00940000158074 ENSGT00390000009084.a ENSGT00530000069547.f ENSGT00390000012918.d.a.b Cyprininae_a ANCESTRAL SPECIES 224 ENSGT00940000157809.j.a.e.a.g ENSGT00980000201980.b ENSGT00940000163288.a.b.b.b.a.a.a.a.h.b ENSGT00940000161012.s ENSGT00940000159313.d ENSGT00940000160389.c.a ENSGT00510000047770.c.a.a ENSGT00940000159788.a.a.a ENSGT00940000160550.e ENSGT00940000159869.l ENSGT00950000182979.a.b.b.b.b.i.a.a ENSGT00940000163663.B.a.b ENSGT00940000160824.a ENSGT00940000176030 ENSGT00940000158822.c ENSGT01100000263504.a.b.a.b.a.a ##35 ENSGT00940000154307.B.e ENSGT01060000248742.f ENSGT00730000110939.a.c.b ENSGT00550000075088.a.a.d ENSGT00510000049239.b.b.a ENSGT00940000167095.B ENSGT00940000155267.t.b ENSGT00940000160374.d.b.a ENSGT00940000156355.n.a.a ENSGT00940000160498.c.g ENSGT00940000161466.e ENSGT00940000158074.e ENSGT00390000009084.a ENSGT00530000069547.f ENSGT00390000012918.d.a.b Common carp reference MODERN SPECIES 3 ENSCCRG00000013305 elavl3 (ENSCCRG00000012388) prkcsh (ENSCCRG00000079846) ENSCCRG00000081262 raver1 (ENSCCRG00000030357) TYK2 (ENSCCRG00000027754) ENSCCRG00000027680 ENSCCRG00000027674 cdip1 (ENSCCRG00000066219) polr3k (ENSCCRG00000079852) ENSCCRG00000065133 shisa9b (ENSCCRG00000037221) ENSCCRG00000061778 ENSCCRG00000011140 ENSCCRG00000048566 ENSCCRG00000053829 ##35 gper1 (ENSCCRG00000082453) gpr146 (ENSCCRG00000058244) ENSCCRG00000011149 ube2ia (ENSCCRG00000080055) il21r.1 (ENSCCRG00000079035) il21r.2 (ENSCCRG00000075831) pdpk1a (ENSCCRG00000005652) kctd5a (ENSCCRG00000028838) ENSCCRG00000060625 hs3st2 (ENSCCRG00000006265) hs3st4 (ENSCCRG00000053736) kdm8 (ENSCCRG00000070522) nsmce1 (ENSCCRG00000002066) ENSCCRG00000076026 ENSCCRG00000020110 Goldfish MODERN SPECIES 34 paf1 (ENSCARG00000062681) ENSCARG00000062611 ENSCARG00000062602 SAMD4B (ENSCARG00000062440) psma6l (ENSCARG00000062392) otx5 (ENSCARG00000062381) ENSCARG00000062331 ENSCARG00000062311 ##11 h3f3b.1 (ENSCARG00000062294) ##35 ENSCARG00000062235 ENSCARG00000062155 tomt (ENSCARG00000062129) DMWD (ENSCARG00000062096) ENSCARG00000062046 ##11 ENSCARG00000062023 #22 ENSCARG00000061999 ##35 eif3k (ENSCARG00000061797) ENSCARG00000061787 tomt (ENSCARG00000061772) inppl1a (ENSCARG00000058711) inppl1a (ENSCARG00000061553) phox2a (ENSCARG00000058622) CLPB (ENSCARG00000054911) ENSCARG00000052655 ENSCARG00000052562 ENSCARG00000052534 ENSCARG00000052525 gap43 (ENSCARG00000052506) ENSCARG00000052473 stard10 (ENSCARG00000052433) PDE2A (ENSCARG00000051739) Sarcopterygii ANCESTRAL SPECIES 285 ENSGT00510000048783 ENSGT00940000155267 ENSGT00940000160374 ENSGT00550000075088.a.a ENSGT00730000110939.a ENSGT00390000014665 ENSGT00510000048359 ENSGT00940000158822 ENSGT01100000263504.a.b.a.b.a.a ##35 ENSGT00510000049652 ENSGT00390000006068 ENSGT00390000017838 ENSGT00940000154307.B ENSGT01030000234518.B.b Coelacanth MODERN SPECIES 3101 SDE2 (ENSLACG00000002453) #21 h3f3d (ENSLACG00000004118) ##35 Tetrapoda ANCESTRAL SPECIES 24 ENSGT00510000048783 ENSGT00940000168576 ENSGT00940000155267 ENSGT00940000160374 ENSGT00550000075088.a.a ENSGT00730000110939.a ENSGT00390000014665 ENSGT00510000048359 ENSGT00940000158822 ENSGT01100000263504.a.b.a.b.a.a ##35 ENSGT00510000049652 ENSGT00940000154307.B ENSGT00390000006068 ENSGT01030000234888 ENSGT00390000017838 ENSGT00940000161956 ENSGT00940000162649 ENSGT00390000016895 ENSGT00940000155698.A ENSGT00390000015750 ENSGT00940000155830 ENSGT00390000005666 ENSGT00940000157513 ENSGT00940000159039 ENSGT00940000162800 Anura ANCESTRAL SPECIES 43 ENSGT00940000158822 ENSGT01100000263504.a.b.a.b.a.a ##35 ENSGT00510000049652 ENSGT01100000263504.a.a ##35 ENSGT00940000154307.B ENSGT00390000015973 ENSGT00940000155698.A ENSGT00390000015750 ENSGT00940000155830 ENSGT00390000005666 ENSGT00940000157513 ENSGT00940000159039 ENSGT00940000162800 ENSGT00950000182951.A.a.a ENSGT00390000017961 ENSGT00950000183188.A.b ENSGT01060000248591.a.a.a.a Leishan spiny toad MODERN SPECIES 7 TP53BP2 (ENSLLEG00000020879) FBXO28 (ENSLLEG00000020481) NVL (ENSLLEG00000020025) ENSLLEG00000019991 ENSLLEG00000019926 ##8 WDR26 (ENSLLEG00000019495) CNIH3 (ENSLLEG00000019334) #8 ENSLLEG00000018068 LBR (ENSLLEG00000017765) #11 ENAH (ENSLLEG00000017268) #13 SRP9 (ENSLLEG00000017161) #15 EPHX1 (ENSLLEG00000017054) #16 TMEM63A (ENSLLEG00000016581) #17 ENSLLEG00000016508 #20 SDE2 (ENSLLEG00000016419) #21 ENSLLEG00000016356 ##35 ENSLLEG00000016221 ENSLLEG00000016183 ACBD3 (ENSLLEG00000016048) #23 LIN9 (ENSLLEG00000015844) #25 ENSLLEG00000015804 PARP1 (ENSLLEG00000015662) #26 STUM (ENSLLEG00000015570) #27 ITPKB (ENSLLEG00000015339) #28 COQ8A (ENSLLEG00000015209) #30 CDC42BPA (ENSLLEG00000013288) #31 CIAO2B (ENSLLEG00000013103) XDH (ENSLLEG00000012626) ENSLLEG00000012568 ENSLLEG00000012536 EHD3 (ENSLLEG00000012406) Frog MODERN SPECIES 9 trrap (ENSXETG00000020075) ENSXETG00000041447 fam20c (ENSXETG00000001395) ENSXETG00000009759 foxl3-ot1 (ENSXETG00000042095) ENSXETG00000024444 ENSXETG00000045491 pdgfa (ENSXETG00000001379) prkar1b (ENSXETG00000038988) dnaaf5 (ENSXETG00000021643) sun1 (ENSXETG00000021642) get4 (ENSXETG00000021638) adap1 (ENSXETG00000044491) cyp2w1 (ENSXETG00000047999) unkl (ENSXETG00000043178) h3f3b (ENSXETG00000012575) ##35 c16orf91 (ENSXETG00000019929) ENSXETG00000043742 gper1 (ENSXETG00000021597) ENSXETG00000043623 gpr146 (ENSXETG00000039072) gnptg (ENSXETG00000021590) tsr3 (ENSXETG00000021589) baiap3 (ENSXETG00000021585) ube2i (ENSXETG00000004027) kctd5 (ENSXETG00000041469) pdpk1 (ENSXETG00000004025) il21r (ENSXETG00000048851) nsmce1 (ENSXETG00000045416) ENSXETG00000039272 ENSXETG00000041770 Amniota ANCESTRAL SPECIES 14 ENSGT01090000260051.a ENSGT00390000011856 ENSGT00940000153578.A ENSGT00940000153335.a.a ENSGT00390000017589 ENSGT00940000157287 ENSGT00720000108861 ENSGT00900000141125 ENSGT00940000161851 ENSGT00940000154334.l ENSGT00530000063718.a.a ENSGT00730000110939.b ENSGT00940000159360 ENSGT01100000263504.a.a ##35 ENSGT00940000167259 ENSGT01100000263504.a.b.a.b.a.a ##35 ENSGT00950000183187.B ENSGT01100000263555.b ENSGT00390000007870 ENSGT00520000062027 ENSGT00940000157800 ENSGT00930000151032.B ENSGT00950000182906.a.a.b ENSGT00390000004214 ENSGT00940000158256 ENSGT00390000016550 ENSGT00940000181148 ENSGT00940000155738 ENSGT00550000074902 ENSGT00940000153432.A.a ENSGT00390000014620 Mammalia ANCESTRAL SPECIES ENSGT01100000263504.a.b.a.b.a.a ##35 Theria ANCESTRAL SPECIES ENSGT01100000263504.a.b.a.b.a.a ##35 Marsupialia ANCESTRAL SPECIES ENSGT01100000263504.a.b.a.b.a.a ##35 Opossum MODERN SPECIES 1 EXOC7 (ENSMODG00000008295) ZACN (ENSMODG00000008222) SRP68 (ENSMODG00000008204) ENSMODG00000036915 ENSMODG00000047876 CDK3 (ENSMODG00000007835) TEN1 (ENSMODG00000027940) ENSMODG00000007822 FBF1 (ENSMODG00000007813) MRPL38 (ENSMODG00000007771) TRIM65 (ENSMODG00000007756) TRIM47 (ENSMODG00000007743) ENSMODG00000007725 UNC13D (ENSMODG00000007708) UNK (ENSMODG00000007684) H3F3B (ENSMODG00000040162) ##35 GALK1 (ENSMODG00000007636) ITGB4 (ENSMODG00000007605) ENSMODG00000007562 RECQL5 (ENSMODG00000007532) SMIM5 (ENSMODG00000048664) LLGL2 (ENSMODG00000007477) TSEN54 (ENSMODG00000007438) ENSMODG00000039897 ENSMODG00000007426 TMEM94 (ENSMODG00000007405) GRB2 (ENSMODG00000007342) SLC25A19 (ENSMODG00000007328) MIF4GD (ENSMODG00000007305) MRPS7 (ENSMODG00000007290) ENSMODG00000007282 Eutheria ANCESTRAL SPECIES ENSGT01100000263504.a.b.a.b.a.a ##35 Atlantogenata ANCESTRAL SPECIES ENSGT01100000263504.a.b.a.b.a.a ##35 Afrotheria ANCESTRAL SPECIES ENSGT01100000263504.a.b.a.b.a.a ##35 Afrotheria_a ANCESTRAL SPECIES ENSGT01100000263504.a.b.a.b.a.a ##35 Hyrax MODERN SPECIES 6602 WBP2 (ENSPCAG00000004747) UNC13D (ENSPCAG00000004591) UNK (ENSPCAG00000004504) ENSPCAG00000004484 ##35 GALK1 (ENSPCAG00000004361) ITGB4 (ENSPCAG00000004155) SAP30BP (ENSPCAG00000004075) RECQL5 (ENSPCAG00000003894) ENSPCAG00000003790 ENSPCAG00000003558 Boreoeutheria ANCESTRAL SPECIES ENSGT01100000263504.a.b.a.b.a.a ##35 Euarchontoglires ANCESTRAL SPECIES ENSGT01100000263504.a.b.a.b.a.a ##35 Primates ANCESTRAL SPECIES ENSGT01100000263504.a.b.a.b.a.a ##35 Strepsirrhini ANCESTRAL SPECIES ENSGT01100000263504.a.b.a.b.a.a ##35 Lemuriformes ANCESTRAL SPECIES ENSGT01100000263504.a.b.a.b.a.a ##35 Lemuriformes_a ANCESTRAL SPECIES ENSGT01100000263504.a.b.a.b.a.a ##35 Greater bamboo lemur MODERN SPECIES 1005 EXOC7 (ENSPSMG00000004295) ZACN (ENSPSMG00000003469) GALR2 (ENSPSMG00000003467) SRP68 (ENSPSMG00000003438) EVPL (ENSPSMG00000003396) CDK3 (ENSPSMG00000003363) TEN1 (ENSPSMG00000003354) ACOX1 (ENSPSMG00000003273) FBF1 (ENSPSMG00000003109) MRPL38 (ENSPSMG00000002983) TRIM65 (ENSPSMG00000002961) TRIM47 (ENSPSMG00000002954) WBP2 (ENSPSMG00000002823) UNC13D (ENSPSMG00000002720) UNK (ENSPSMG00000002650) ENSPSMG00000002609 ##35 GALK1 (ENSPSMG00000002594) ITGB4 (ENSPSMG00000001696) SAP30BP (ENSPSMG00000001081) SMIM5 (ENSPSMG00000000956) RECQL5 (ENSPSMG00000000833) ENSPSMG00000000669 LLGL2 (ENSPSMG00000000582) TSEN54 (ENSPSMG00000000452) CASKIN2 (ENSPSMG00000000420) TMEM94 (ENSPSMG00000000357) GRB2 (ENSPSMG00000000178) Haplorrhini ANCESTRAL SPECIES ENSGT01100000263504.a.b.a.b.a.a ##35 Simiiformes ANCESTRAL SPECIES ENSGT01100000263504.a.b.a.b.a.a ##35 Catarrhini ANCESTRAL SPECIES ENSGT01100000263504.a.b.a.b.a.a ##35 Cercopithecidae ANCESTRAL SPECIES ENSGT01100000263504.a.b.a.b.a.a ##35 Rhinopithecus ANCESTRAL SPECIES 245 ENSGT00940000160505.a #9 ENSGT00390000000417.a.a.b.a.b #11 ENSGT00940000157376 #13 ENSGT00390000018505.b #15 ENSGT00390000002210.d #16 ENSGT00940000159576 #17 ENSGT00390000010056.o #20 ENSGT00950000183044.a.a.a.c #19 ENSGT00390000010056.p #20 ENSGT00530000063402.b #21 ENSGT01100000263504.a.b.a.b.a.a ##35 ENSGT01100000263504.a.b.b.b.b #35 ENSGT00530000063651.a #23 ENSGT00950000183105.B.a.a.b.b ENSGT00940000162190 #24 ENSGT00390000003188 #25 ENSGT00940000156058.o #26 ENSGT00390000008003 #27 ENSGT00940000156764.a #28 ENSGT00940000157923 #29 ENSGT00940000156810 #30 ENSGT01030000234517.H.b #31 ENSGT00910000148176 Black snub-nosed monkey MODERN SPECIES 768 EXOC7 (ENSRBIG00000044879) ZACN (ENSRBIG00000034162) GALR2 (ENSRBIG00000032931) SRP68 (ENSRBIG00000042887) EVPL (ENSRBIG00000009825) CDK3 (ENSRBIG00000039858) TEN1 (ENSRBIG00000009807) ACOX1 (ENSRBIG00000037228) FBF1 (ENSRBIG00000040270) MRPL38 (ENSRBIG00000014024) TRIM65 (ENSRBIG00000036508) TRIM47 (ENSRBIG00000042026) WBP2 (ENSRBIG00000042519) UNC13D (ENSRBIG00000038207) UNK (ENSRBIG00000025523) ENSRBIG00000038280 ##35 ENSRBIG00000043525 GALK1 (ENSRBIG00000039497) ITGB4 (ENSRBIG00000040945) SAP30BP (ENSRBIG00000044227) SMIM6 (ENSRBIG00000017485) SMIM5 (ENSRBIG00000029445) RECQL5 (ENSRBIG00000008500) MYO15B (ENSRBIG00000039818) LLGL2 (ENSRBIG00000027549) TSEN54 (ENSRBIG00000043040) CASKIN2 (ENSRBIG00000042182) TMEM94 (ENSRBIG00000035664) GRB2 (ENSRBIG00000032249) ENSRBIG00000033257 MIF4GD (ENSRBIG00000027917) Golden snub-nosed monkey DUPLICATION Golden snub-nosed monkey MODERN SPECIES 721 ENSRROG00000029457 #17 ENSRROG00000038435 #20 PYCR2 (ENSRROG00000044426) #19 ENSRROG00000040509 #20 SDE2 (ENSRROG00000043133) #21 ENSRROG00000033769 ##35 ENSRROG00000036089 ACBD3 (ENSRROG00000040704) #23 MIXL1 (ENSRROG00000043159) #24 LIN9 (ENSRROG00000040247) #25 PARP1 (ENSRROG00000029280) #26 ENSRROG00000020327 STUM (ENSRROG00000009500) #27 ITPKB (ENSRROG00000033942) #28 PSEN2 (ENSRROG00000031052) #29 COQ8A (ENSRROG00000034012) #30 CDC42BPA (ENSRROG00000029107) #31 ENSRROG00000021333 Golden snub-nosed monkey MODERN SPECIES 2887 ENSRROG00000030186 ENSRROG00000016367 ##35 ENSRROG00000031097 Cercopithecinae ANCESTRAL SPECIES ENSGT01100000263504.a.b.a.b.a.a ##35 Cercopithecinae_a ANCESTRAL SPECIES ENSGT01100000263504.a.b.a.b.a.a ##35 Cercopithecinae_b ANCESTRAL SPECIES ENSGT01100000263504.a.b.a.b.a.a ##35 Olive baboon MODERN SPECIES CNIH4 (ENSPANG00000012290) ##8 WDR26 (ENSPANG00000012516) ENSPANG00000038502 ENSPANG00000030716 CNIH3 (ENSPANG00000016366) #8 ENSPANG00000043776 LBR (ENSPANG00000006165) #11 ENAH (ENSPANG00000007502) #13 SRP9 (ENSPANG00000030164) #15 EPHX1 (ENSPANG00000014172) #16 TMEM63A (ENSPANG00000009888) #17 ENSPANG00000023521 #20 PYCR2 (ENSPANG00000013395) #19 ENSPANG00000031485 #20 SDE2 (ENSPANG00000017716) #21 ENSPANG00000012291 ##35 ACBD3 (ENSPANG00000026078) #23 MIXL1 (ENSPANG00000007593) #24 LIN9 (ENSPANG00000007503) #25 PARP1 (ENSPANG00000011198) #26 ENSPANG00000041992 ENSPANG00000042335 #27 ITPKB (ENSPANG00000014076) #28 ENSPANG00000040643 PSEN2 (ENSPANG00000015683) #29 COQ8A (ENSPANG00000005934) #30 CDC42BPA (ENSPANG00000007777) #31 ENSPANG00000048983 ENSPANG00000048924 JMJD4 (ENSPANG00000031507) SNAP47 (ENSPANG00000017951) Cercopithecinae_d ANCESTRAL SPECIES ENSGT01100000263504.a.b.a.b.a.a ##35 Sooty mangabey DUPLICATION Sooty mangabey MODERN SPECIES 519 ENSCATG00000029592 ZACN (ENSCATG00000037431) GALR2 (ENSCATG00000038109) SRP68 (ENSCATG00000041299) EVPL (ENSCATG00000023023) CDK3 (ENSCATG00000040973) TEN1 (ENSCATG00000043817) ACOX1 (ENSCATG00000018885) FBF1 (ENSCATG00000040310) MRPL38 (ENSCATG00000035012) TRIM65 (ENSCATG00000041085) TRIM47 (ENSCATG00000045323) WBP2 (ENSCATG00000032023) UNC13D (ENSCATG00000019642) UNK (ENSCATG00000038041) ENSCATG00000038026 ##35 GALK1 (ENSCATG00000034347) ITGB4 (ENSCATG00000040230) SAP30BP (ENSCATG00000040200) RECQL5 (ENSCATG00000029763) SMIM5 (ENSCATG00000040629) MYO15B (ENSCATG00000035616) LLGL2 (ENSCATG00000030748) TSEN54 (ENSCATG00000042877) CASKIN2 (ENSCATG00000042009) TMEM94 (ENSCATG00000039566) GRB2 (ENSCATG00000043959) ENSCATG00000033370 SLC25A19 (ENSCATG00000039036) MIF4GD (ENSCATG00000029614) MRPS7 (ENSCATG00000045102) Sooty mangabey MODERN SPECIES 210 BRWD3 (ENSCATG00000038615) ENSCATG00000029713 ##35 ENSCATG00000029855 HMGN5 (ENSCATG00000018617) ENSCATG00000038731 SH3BGRL (ENSCATG00000031766) ENSCATG00000013910 ENSCATG00000036649 ENSCATG00000039091 POU3F4 (ENSCATG00000019383) CYLC1 (ENSCATG00000036867) RPS6KA6 (ENSCATG00000016428) HDX (ENSCATG00000038854) Euarchontoglires_A ANCESTRAL SPECIES ENSGT01100000263504.a.b.a.b.a.a ##35 Glires ANCESTRAL SPECIES ENSGT01100000263504.a.b.a.b.a.a ##35 Rodentia ANCESTRAL SPECIES ENSGT01100000263504.a.b.a.b.a.a ##35 Rodentia_B ANCESTRAL SPECIES ENSGT01100000263504.a.b.a.b.a.a ##35 Myomorpha ANCESTRAL SPECIES ENSGT01100000263504.a.b.a.b.a.a ##35 Muroidea ANCESTRAL SPECIES ENSGT01100000263504.a.b.a.b.a.a ##35 Muroidea_A ANCESTRAL SPECIES ENSGT01100000263504.a.b.a.b.a.a ##35 Cricetidae ANCESTRAL SPECIES ENSGT01100000263504.a.b.a.b.a.a ##35 Cricetidae_B ANCESTRAL SPECIES ENSGT01100000263504.a.b.a.b.a.a ##35 Northern American deer mouse MODERN SPECIES 2 Dnah14 (ENSPEMG00000025670) #9 Ccdc121rt1 (ENSPEMG00000029360) Cnih3 (ENSPEMG00000008307) #8 Wdr26 (ENSPEMG00000010249) Cnih4 (ENSPEMG00000012374) ##8 Nvl (ENSPEMG00000001236) ENSPEMG00000025337 9130409I23Rik (ENSPEMG00000011902) ENSPEMG00000025705 #16 ENSPEMG00000024494 #16 Tmem63a (ENSPEMG00000016310) #17 Lefty1 (ENSPEMG00000026696) #20 Pycr2 (ENSPEMG00000018727) #19 Lefty2 (ENSPEMG00000018991) #20 Sde2 (ENSPEMG00000001047) #21 ENSPEMG00000019940 ##35 Acbd3 (ENSPEMG00000019971) #23 Mixl1 (ENSPEMG00000020007) #24 Lin9 (ENSPEMG00000020176) #25 Parp1 (ENSPEMG00000020230) #26 Stum (ENSPEMG00000000087) #27 Itpkb (ENSPEMG00000000832) #28 Psen2 (ENSPEMG00000006562) #29 Coq8a (ENSPEMG00000010057) #30 Cdc42bpa (ENSPEMG00000016582) #31 Ahctf1 (ENSPEMG00000000305) #32 ENSPEMG00000016591 Kif28 (ENSPEMG00000014020) #33 Sccpdh (ENSPEMG00000017539) #34 Cnst (ENSPEMG00000018492) Tfb2m (ENSPEMG00000018713) #36 Prairie vole MODERN SPECIES 15 Foxj1 (ENSMOCG00000017508) Exoc7 (ENSMOCG00000014303) Galr2 (ENSMOCG00000021612) Srp68 (ENSMOCG00000022200) Evpl (ENSMOCG00000014229) Cdk3 (ENSMOCG00000021888) Ten1 (ENSMOCG00000016408) Acox1 (ENSMOCG00000020348) Fbf1 (ENSMOCG00000015757) Mrpl38 (ENSMOCG00000013108) ENSMOCG00000014798 Trim47 (ENSMOCG00000017116) Wbp2 (ENSMOCG00000015478) Unc13d (ENSMOCG00000012654) Unk (ENSMOCG00000021657) ENSMOCG00000013773 ##35 Galk1 (ENSMOCG00000016831) Itgb4 (ENSMOCG00000018829) Sap30bp (ENSMOCG00000011898) Recql5 (ENSMOCG00000019642) Myo15b (ENSMOCG00000013403) Llgl2 (ENSMOCG00000016380) Tsen54 (ENSMOCG00000021585) ENSMOCG00000015226 Tmem94 (ENSMOCG00000014527) ENSMOCG00000002602 Grb2 (ENSMOCG00000017537) ENSMOCG00000013006 Mif4gd (ENSMOCG00000010287) Mrps7 (ENSMOCG00000005519) Gga3 (ENSMOCG00000003209) Murinae ANCESTRAL SPECIES ENSGT01100000263504.a.b.a.b.a.a ##35 Rat MODERN SPECIES 1 AABR07030823.1 (ENSRNOG00000046001) Rnf157 (ENSRNOG00000049862) Exoc7 (ENSRNOG00000070201) Galr2 (ENSRNOG00000061733) Srp68 (ENSRNOG00000009351) Evpl (ENSRNOG00000009343) Ten1 (ENSRNOG00000060307) Acox1 (ENSRNOG00000008755) Fbf1 (ENSRNOG00000008577) Mrpl38 (ENSRNOG00000008256) Trim65 (ENSRNOG00000024145) Trim47 (ENSRNOG00000008215) Wbp2 (ENSRNOG00000007971) Unc13d (ENSRNOG00000007439) Unk (ENSRNOG00000006600) H3f3a (ENSRNOG00000006532) ##35 ENSRNOG00000069138 Galk1 (ENSRNOG00000006359) Itgb4 (ENSRNOG00000005580) Rps18l1 (ENSRNOG00000033152) Sap30bp (ENSRNOG00000005482) Smim5 (ENSRNOG00000049642) Recql5 (ENSRNOG00000005107) Myo15b (ENSRNOG00000042445) Llgl2 (ENSRNOG00000004834) Tsen54 (ENSRNOG00000004598) Caskin2 (ENSRNOG00000004310) Tmem94 (ENSRNOG00000004032) LOC108350839 (ENSRNOG00000063632) Grb2 (ENSRNOG00000003990) Slc25a19 (ENSRNOG00000003918) Mus ANCESTRAL SPECIES ENSGT01100000263504.a.b.a.b.a.a ##35 Mus_A ANCESTRAL SPECIES ENSGT01100000263504.a.b.a.b.a.a ##35 Mus_B ANCESTRAL SPECIES ENSGT01100000263504.a.b.a.b.a.a ##35 Mus_C ANCESTRAL SPECIES ENSGT01100000263504.a.b.a.b.a.a ##35 Steppe mouse MODERN SPECIES 3304 Cnih3 (ENSMSIG00000008251) #8 ENSMSIG00000008233 Wdr26 (ENSMSIG00000008106) ENSMSIG00000008071 ##8 Nvl (ENSMSIG00000007946) ENSMSIG00000007861 9130409I23Rik (ENSMSIG00000007843) ENSMSIG00000007826 ENSMSIG00000007797 Ephx1 (ENSMSIG00000007746) #16 Tmem63a (ENSMSIG00000007714) #17 Lefty1 (ENSMSIG00000007710) #20 Pycr2 (ENSMSIG00000007693) #19 Lefty2 (ENSMSIG00000007680) #20 Sde2 (ENSMSIG00000007635) #21 ENSMSIG00000007594 ##35 Acbd3 (ENSMSIG00000007560) #23 Mixl1 (ENSMSIG00000007539) #24 ENSMSIG00000007488 #25 Parp1 (ENSMSIG00000007405) #26 Stum (ENSMSIG00000007366) #27 Itpkb (ENSMSIG00000007328) #28 Psen2 (ENSMSIG00000007254) #29 Coq8a (ENSMSIG00000007186) #30 Cdc42bpa (ENSMSIG00000006204) #31 ENSMSIG00000006134 Ahctf1 (ENSMSIG00000005983) #32 Kif28 (ENSMSIG00000005729) #33 ENSMSIG00000005652 #34 Cnst (ENSMSIG00000005608) Tfb2m (ENSMSIG00000005588) #36 Laurasiatheria ANCESTRAL SPECIES ENSGT01100000263504.a.b.a.b.a.a ##35 Laurasiatheria_a ANCESTRAL SPECIES ENSGT01100000263504.a.b.a.b.a.a ##35 Laurasiatheria_b ANCESTRAL SPECIES ENSGT01100000263504.a.b.a.b.a.a ##35 Laurasiatheria_c ANCESTRAL SPECIES ENSGT01100000263504.a.b.a.b.a.a ##35 Equus ANCESTRAL SPECIES ENSGT01100000263504.a.b.a.b.a.a ##35 Horse MODERN SPECIES 23 NVL (ENSECAG00000014421) CNIH4 (ENSECAG00000010873) ##8 WDR26 (ENSECAG00000020139) CNIH3 (ENSECAG00000019237) #8 ENSECAG00000060177 DNAH14 (ENSECAG00000044830) #9 LBR (ENSECAG00000011192) #11 ENAH (ENSECAG00000022447) #13 SRP9 (ENSECAG00000054865) ##15 EPHX1 (ENSECAG00000019677) #16 TMEM63A (ENSECAG00000018566) #17 ENSECAG00000039385 #20 PYCR2 (ENSECAG00000010882) #19 ENSECAG00000038401 #20 SDE2 (ENSECAG00000008052) #21 H3-3A (ENSECAG00000006904) ##35 ACBD3 (ENSECAG00000000084) #23 MIXL1 (ENSECAG00000033929) #24 LIN9 (ENSECAG00000014325) #25 PARP1 (ENSECAG00000019207) #26 STUM (ENSECAG00000037774) #27 ITPKB (ENSECAG00000014769) #28 PSEN2 (ENSECAG00000008285) #29 COQ8A (ENSECAG00000019955) #30 CDC42BPA (ENSECAG00000017881) #31 AHCTF1 (ENSECAG00000011125) #32 ENSECAG00000038309 #33 SCCPDH (ENSECAG00000020866) #34 CNST (ENSECAG00000019039) TFB2M (ENSECAG00000016462) #36 ENSECAG00000057168 Carnivora ANCESTRAL SPECIES ENSGT01100000263504.a.b.a.b.a.a ##35 Caniformia ANCESTRAL SPECIES ENSGT01100000263504.a.b.a.b.a.a ##35 Caniformia_b ANCESTRAL SPECIES ENSGT01100000263504.a.b.a.b.a.a ##35 Ursidae ANCESTRAL SPECIES ENSGT01100000263504.a.b.a.b.a.a ##35 Ursus ANCESTRAL SPECIES 2 ENSGT00390000003595 ENSGT01090000260051.a ENSGT00390000011856 ENSGT00940000153578.A ENSGT00940000153335.a.a ENSGT00390000017589 ENSGT00940000157287 ENSGT00720000108861 ENSGT00900000141125 ENSGT00940000161851 ENSGT00940000154334.l ENSGT00530000063718.a.a ENSGT00730000110939.b ENSGT00940000159360 ENSGT01100000263504.a.a.xb.a ##35 ENSGT01100000263504.a.b.a.b.a.a ##35 ENSGT00950000183187.B ENSGT01100000263555.b ENSGT00390000007870 ENSGT00940000157800 ENSGT00520000062027 ENSGT00930000151032.B ENSGT00950000182906.a.a.b ENSGT00390000004214 ENSGT00940000158256 ENSGT00390000016550 ENSGT00940000155738 ENSGT00550000074902 ENSGT00940000153432.A.a ENSGT00390000014620 ENSGT00940000157333 American black bear MODERN SPECIES 319 TRIM47 (ENSUAMG00000003685) WBP2 (ENSUAMG00000003683) UNC13D (ENSUAMG00000003675) UNK (ENSUAMG00000003483) ENSUAMG00000003467 ##35 GALK1 (ENSUAMG00000003463) ITGB4 (ENSUAMG00000003371) Giant Panda DUPLICATION Giant Panda MODERN SPECIES 18 ENSAMEG00000029292 DEGS1 (ENSAMEG00000015906) NVL (ENSAMEG00000015910) CNIH4 (ENSAMEG00000015944) ##8 WDR26 (ENSAMEG00000015955) CNIH3 (ENSAMEG00000024773) #8 DNAH14 (ENSAMEG00000015805) #9 LBR (ENSAMEG00000015778) #11 ENAH (ENSAMEG00000015746) #13 SRP9 (ENSAMEG00000014710) #15 EPHX1 (ENSAMEG00000027522) #16 TMEM63A (ENSAMEG00000014638) #17 PYCR2 (ENSAMEG00000014626) #19 ENSAMEG00000014607 #20 SDE2 (ENSAMEG00000014591) #21 ENSAMEG00000029116 ##35 ACBD3 (ENSAMEG00000014568) #23 MIXL1 (ENSAMEG00000014565) #24 LIN9 (ENSAMEG00000014535) #25 PARP1 (ENSAMEG00000014451) #26 STUM (ENSAMEG00000009117) #27 ITPKB (ENSAMEG00000009097) #28 PSEN2 (ENSAMEG00000009070) #29 COQ8A (ENSAMEG00000009019) #30 ENSAMEG00000008890 #31 ENSAMEG00000006501 #32 ENSAMEG00000029183 #33 SCCPDH (ENSAMEG00000006562) #34 CNST (ENSAMEG00000006589) TFB2M (ENSAMEG00000006593) #36 SMYD3 (ENSAMEG00000006619) #37 Giant Panda MODERN SPECIES 1481 ENSAMEG00000029932 ##35 Artiodactyla ANCESTRAL SPECIES ENSGT01100000263504.a.b.a.b.a.a ##35 Artiodactyla_a ANCESTRAL SPECIES ENSGT01100000263504.a.b.a.b.a.a ##35 Artiodactyla_b ANCESTRAL SPECIES ENSGT01100000263504.a.b.a.b.a.a ##35 Cetacea ANCESTRAL SPECIES ENSGT01100000263504.a.b.a.b.a.a ##35 Odontoceti ANCESTRAL SPECIES ENSGT01100000263504.a.b.a.b.a.a ##35 Sperm whale MODERN SPECIES 15 DEGS1 (ENSPCTG00005000386) NVL (ENSPCTG00005000438) ENSPCTG00005000568 CNIH4 (ENSPCTG00005000590) ##8 WDR26 (ENSPCTG00005000611) CNIH3 (ENSPCTG00005000645) #8 LBR (ENSPCTG00005000679) #11 ENAH (ENSPCTG00005000731) #13 SRP9 (ENSPCTG00005000768) #15 EPHX1 (ENSPCTG00005000792) #16 TMEM63A (ENSPCTG00005000810) #17 ENSPCTG00005000846 #20 PYCR2 (ENSPCTG00005000862) #19 ENSPCTG00005000889 #20 SDE2 (ENSPCTG00005000908) #21 ENSPCTG00005000927 ##35 ACBD3 (ENSPCTG00005000938) #23 MIXL1 (ENSPCTG00005000953) #24 LIN9 (ENSPCTG00005000990) #25 PARP1 (ENSPCTG00005001077) #26 STUM (ENSPCTG00005001169) #27 ITPKB (ENSPCTG00005001181) #28 PSEN2 (ENSPCTG00005001191) #29 CDC42BPA (ENSPCTG00005001336) #31 AHCTF1 (ENSPCTG00005001979) #32 SCCPDH (ENSPCTG00005002144) #34 ENSPCTG00005002163 ENSPCTG00005002174 ENSPCTG00005002183 ENSPCTG00005002195 ENSPCTG00005002217 Pecora ANCESTRAL SPECIES ENSGT01100000263504.a.b.a.b.a.a ##35 Percora_a ANCESTRAL SPECIES ENSGT01100000263504.a.b.a.b.a.a ##35 Bovidae ANCESTRAL SPECIES ENSGT01100000263504.a.b.a.b.a.a ##35 Bovinae ANCESTRAL SPECIES ENSGT01100000263504.a.b.a.b.a.a ##35 Bos ANCESTRAL SPECIES ENSGT01100000263504.a.b.a.b.a.a ##35 Bos_a ANCESTRAL SPECIES ENSGT01100000263504.a.b.a.b.a.a ##35 Domestic yak MODERN SPECIES 10 FOXJ1 (ENSBGRG00000024586) EXOC7 (ENSBGRG00000024133) ZACN (ENSBGRG00000024041) GALR2 (ENSBGRG00000024026) SRP68 (ENSBGRG00000023911) ENSBGRG00000023453 CDK3 (ENSBGRG00000023308) TEN1 (ENSBGRG00000023261) ACOX1 (ENSBGRG00000023172) FBF1 (ENSBGRG00000022706) MRPL38 (ENSBGRG00000022597) TRIM65 (ENSBGRG00000022555) TRIM47 (ENSBGRG00000022537) WBP2 (ENSBGRG00000022262) UNK (ENSBGRG00000021946) ENSBGRG00000021844 ##35 GALK1 (ENSBGRG00000021749) ITGB4 (ENSBGRG00000021071) SAP30BP (ENSBGRG00000020921) SMIM5 (ENSBGRG00000020864) RECQL5 (ENSBGRG00000020596) ENSBGRG00000019812 LLGL2 (ENSBGRG00000019559) TSEN54 (ENSBGRG00000019475) CASKIN2 (ENSBGRG00000019179) TMEM94 (ENSBGRG00000018413) ENSBGRG00000018365 ENSBGRG00000018158 SLC25A19 (ENSBGRG00000018059) ENSBGRG00000017780 MRPS7 (ENSBGRG00000017681) Eulipotyphla ANCESTRAL SPECIES ENSGT01100000263504.a.b.a.b.a.a ##35 Hedgehog DUPLICATION Hedgehog MODERN SPECIES 11966 ENSEEUG00000013796 ##35 Hedgehog MODERN SPECIES 9663 ENSEEUG00000002242 ##35 Sauria ANCESTRAL SPECIES 30 ENSGT00940000153578.A ENSGT00940000153335.a.a ENSGT00390000017589 ENSGT00940000157287 ENSGT00720000108861 ENSGT00900000141125 ENSGT00940000161851 ENSGT00940000154334.l ENSGT00940000165001.a.b ENSGT00940000162951.b ENSGT00530000063718.a.a ENSGT00730000110939.b ENSGT00940000159360 ENSGT01100000263504.a.a ##35 ENSGT00940000167259 ENSGT01100000263504.a.b.a.b.a.a ##35 ENSGT00950000183187.B ENSGT01100000263555.b ENSGT00390000007870 ENSGT00520000062027 ENSGT00940000157800 ENSGT00940000170136 ENSGT00930000151032.B ENSGT00950000182906.a.a.b ENSGT00390000004214 ENSGT00940000158256 ENSGT00390000016550 ENSGT00940000181148 ENSGT00940000155738 ENSGT00550000074902 ENSGT00940000153432.A.a Lepidosauria ANCESTRAL SPECIES 26 ENSGT01090000260051.a ENSGT00390000011856 ENSGT00940000153578.A ENSGT00940000153335.a.a ENSGT00390000017589 ENSGT00940000157287 ENSGT00720000108861 ENSGT00900000141125 ENSGT00940000165001.a.b ENSGT00940000162951.b ENSGT00530000063718.a.a ENSGT00730000110939.b ENSGT00940000159360 ENSGT01100000263504.a.a ##35 ENSGT00940000167259 ENSGT01100000263504.a.b.a.b.a.a ##35 ENSGT00950000183187.B ENSGT01100000263555.b ENSGT00390000007870 ENSGT00940000170136 ENSGT00940000157800 ENSGT00520000062027 ENSGT00930000151032.B ENSGT00950000182906.a.a.b ENSGT00390000004214 ENSGT00940000154272.B ENSGT00940000158256 ENSGT00390000016550 ENSGT00940000181148 ENSGT00940000155738 ENSGT00550000074902 Episquamata ANCESTRAL SPECIES 4 ENSGT01090000260051.a ENSGT00390000011856 ENSGT00940000153578.A ENSGT00940000153335.a.a ENSGT00390000017589 ENSGT00940000157287 ENSGT00720000108861 ENSGT00900000141125 ENSGT00940000165001.a.b ENSGT00940000162951.b ENSGT00530000063718.a.a ENSGT00730000110939.b ENSGT00940000159360 ENSGT01100000263504.a.a ##35 ENSGT00940000167259 ENSGT01100000263504.a.b.a.b.a.a ##35 ENSGT00950000183187.B ENSGT01100000263555.b ENSGT00390000007870 ENSGT00940000170136 ENSGT00940000157800 ENSGT00520000062027 ENSGT00930000151032.B ENSGT00950000182906.a.a.b ENSGT00390000004214 ENSGT00940000154272.B ENSGT00940000158256 ENSGT00390000016550 ENSGT00940000181148 ENSGT00940000155738 ENSGT00550000074902 Laterata ANCESTRAL SPECIES 1 ENSGT01090000260051.a ENSGT00390000011856 ENSGT00940000153578.A ENSGT00940000153335.a.a ENSGT00390000017589 ENSGT00940000157287 ENSGT00720000108861 ENSGT00900000141125 ENSGT00940000165001.a.b.b ENSGT00940000162951.b ENSGT00530000063718.a.a ENSGT00730000110939.b ENSGT00940000159360 ENSGT01100000263504.a.a ##35 ENSGT00940000167259 ENSGT01100000263504.a.b.a.b.a.a ##35 ENSGT00950000183187.B ENSGT01100000263555.b ENSGT00390000007870 ENSGT00940000157800 ENSGT00520000062027 ENSGT00930000151032.B ENSGT00950000182906.a.a.b ENSGT00390000004214 ENSGT00940000154272.B ENSGT00940000158256 ENSGT00390000016550 ENSGT00940000155738 ENSGT00550000074902 ENSGT00940000153432.A.a ENSGT00390000014620 Common wall lizard MODERN SPECIES 10 EXOC7 (ENSPMRG00000007474) GALR2 (ENSPMRG00000007252) SRP68 (ENSPMRG00000007026) ENSPMRG00000006965 CDK3 (ENSPMRG00000006938) TEN1 (ENSPMRG00000006934) ACOX1 (ENSPMRG00000006491) FBF1 (ENSPMRG00000006389) MRPL38 (ENSPMRG00000006352) ENSPMRG00000006345 ENSPMRG00000006343 ENSPMRG00000006334 WBP2 (ENSPMRG00000006302) UNC13D (ENSPMRG00000006185) UNK (ENSPMRG00000006084) ENSPMRG00000006064 ##35 GALK1 (ENSPMRG00000006054) ITGB4 (ENSPMRG00000003570) SAP30BP (ENSPMRG00000003194) RECQL5 (ENSPMRG00000003180) ENSPMRG00000003157 LLGL2 (ENSPMRG00000002877) TSEN54 (ENSPMRG00000002771) ENSPMRG00000002756 ENSPMRG00000002745 TMEM94 (ENSPMRG00000015187) GRB2 (ENSPMRG00000015175) SLC25A19 (ENSPMRG00000015170) MIF4GD (ENSPMRG00000015162) MRPS7 (ENSPMRG00000015158) GGA3 (ENSPMRG00000014536) Toxicofera ANCESTRAL SPECIES ENSGT01100000263504.a.b.a.b.a.a ##35 Lizard MODERN SPECIES 1 EXOC7 (ENSACAG00000007951) ENSACAG00000041679 ENSACAG00000037848 SRP68 (ENSACAG00000007917) ENSACAG00000024058 CDK3 (ENSACAG00000007841) TEN1 (ENSACAG00000007837) ACOX1 (ENSACAG00000007694) FBF1 (ENSACAG00000007621) MRPL38 (ENSACAG00000007563) ENSACAG00000044599 ENSACAG00000040344 WBP2 (ENSACAG00000007483) UNC13D (ENSACAG00000007377) UNK (ENSACAG00000007303) ENSACAG00000041898 ##35 GALK1 (ENSACAG00000007236) ITGB4 (ENSACAG00000006986) ENSACAG00000035248 SAP30BP (ENSACAG00000006967) RECQL5 (ENSACAG00000006875) ENSACAG00000039759 ENSACAG00000036517 ENSACAG00000006818 LLGL2 (ENSACAG00000006728) TSEN54 (ENSACAG00000006714) ENSACAG00000036665 CASKIN2 (ENSACAG00000006671) TMEM94 (ENSACAG00000006582) ENSACAG00000041425 GRB2 (ENSACAG00000006524) Archelosauria ANCESTRAL SPECIES ENSGT01100000263504.a.b.a.b.a.a ##35 Cryptodira ANCESTRAL SPECIES ENSGT01100000263504.a.b.a.b.a.a ##35 Testudinoidea ANCESTRAL SPECIES ENSGT01100000263504.a.b.a.b.a.a ##35 Testudinidae ANCESTRAL SPECIES 18 ENSGT01090000260051.a ENSGT00390000011856 ENSGT00940000153578.A ENSGT00940000153335.a.a ENSGT00390000017589 ENSGT00940000157287 ENSGT00720000108861 ENSGT00900000141125 ENSGT00940000165001.a.b ENSGT00940000162951.b ENSGT00530000063718.a.a ENSGT00730000110939.b ENSGT00940000159360 ENSGT01100000263504.a.a ##35 ENSGT00940000167259 ENSGT01100000263504.a.b.a.b.a.a ##35 ENSGT00950000183187.B ENSGT01100000263555.b ENSGT00390000007870 ENSGT00940000157800 ENSGT00520000062027 ENSGT00930000151032.B ENSGT00950000182906.a.a.b ENSGT00390000004214 ENSGT00940000154272.B ENSGT00940000158256 ENSGT00390000016550 ENSGT00940000155738 ENSGT00550000074902 ENSGT00940000153432.A.a ENSGT00390000014620 Abingdon island giant tortoise DUPLICATION Abingdon island giant tortoise MODERN SPECIES 1719 FOXJ1 (ENSCABG00000009302) EXOC7 (ENSCABG00000009303) GALR2 (ENSCABG00000009305) SRP68 (ENSCABG00000009308) ENSCABG00000009315 CDK3 (ENSCABG00000009316) TEN1 (ENSCABG00000009318) ACOX1 (ENSCABG00000009319) FBF1 (ENSCABG00000009320) MRPL38 (ENSCABG00000009323) ENSCABG00000009327 ENSCABG00000009328 WBP2 (ENSCABG00000009332) UNC13D (ENSCABG00000009342) UNK (ENSCABG00000009405) ENSCABG00000009633 ##35 GALK1 (ENSCABG00000009638) ITGB4 (ENSCABG00000009648) SAP30BP (ENSCABG00000009689) RECQL5 (ENSCABG00000009692) SMIM5 (ENSCABG00000009698) ENSCABG00000009699 LLGL2 (ENSCABG00000009723) TSEN54 (ENSCABG00000010152) ENSCABG00000010157 ENSCABG00000010158 TMEM94 (ENSCABG00000010165) GRB2 (ENSCABG00000010719) SLC25A19 (ENSCABG00000010720) MIF4GD (ENSCABG00000010722) MRPS7 (ENSCABG00000010723) Abingdon island giant tortoise MODERN SPECIES 1905 ENSCABG00000023210 ENSCABG00000023209 ENSCABG00000023208 ENSCABG00000023207 ##35 CRX (ENSCABG00000023206) ENSCABG00000023205 DMAC2 (ENSCABG00000023204) B3GNT8 (ENSCABG00000023203) BCKDHA (ENSCABG00000023202) EXOSC5 (ENSCABG00000023201) B9D2 (ENSCABG00000023200) TGFB1 (ENSCABG00000023199) CCDC97 (ENSCABG00000023198) HNRNPUL1 (ENSCABG00000023197) ENSCABG00000023196 AXL (ENSCABG00000023195) ENSCABG00000023194 ENSCABG00000023193 ENSCABG00000023192 Emydidae ANCESTRAL SPECIES 17 ENSGT00390000011856 ENSGT00940000153578.A ENSGT00940000153335.a.a ENSGT00390000017589 ENSGT00940000157287 ENSGT00720000108861 ENSGT00900000141125 ENSGT00940000161851.a ENSGT00940000165001.a.b ENSGT00940000162951.b ENSGT00530000063718.a.a ENSGT00730000110939.b ENSGT00940000159360 ENSGT01100000263504.a.b.a.a #22 ENSGT00940000171204 ENSGT01100000263504.a.b.a.b.a.a ##35 ENSGT00940000167259 ENSGT00950000183187.B ENSGT01100000263555.b ENSGT00390000007870 ENSGT00940000157800 ENSGT00520000062027 ENSGT00930000151032.B ENSGT00950000182906.a.a.b ENSGT00390000004214 ENSGT00940000158256 ENSGT00390000016550 ENSGT00940000155738 ENSGT00550000074902 ENSGT00940000153432.A.a ENSGT00390000014620 Three-toed box turtle MODERN SPECIES 186 DEGS1 (ENSTMTG00000015289) NVL (ENSTMTG00000015273) CNIH4 (ENSTMTG00000015260) ##8 ENSTMTG00000015235 CNIH3 (ENSTMTG00000015221) #8 ENSTMTG00000015215 ENSTMTG00000015003 LBR (ENSTMTG00000014956) #11 ENAH (ENSTMTG00000014893) #13 SRP9 (ENSTMTG00000014878) #15 EPHX1 (ENSTMTG00000014860) #16 TMEM63A (ENSTMTG00000014830) #17 ENSTMTG00000014798 #20 SDE2 (ENSTMTG00000014789) #21 ENSTMTG00000014776 ##35 ACBD3 (ENSTMTG00000014768) #23 MIXL1 (ENSTMTG00000014749) #24 LIN9 (ENSTMTG00000014586) #25 PARP1 (ENSTMTG00000014530) #26 ITPKB (ENSTMTG00000014515) #28 PSEN2 (ENSTMTG00000014490) #29 COQ8A (ENSTMTG00000014449) #30 CDC42BPA (ENSTMTG00000014403) #31 XDH (ENSTMTG00000014323) ENSTMTG00000014311 EHD3 (ENSTMTG00000014300) ENSTMTG00000014287 GALNT14 (ENSTMTG00000014235) CAPN13 (ENSTMTG00000014193) LCLAT1 (ENSTMTG00000014176) painted turtle MODERN SPECIES 2409 ENSCPBG00000028032 GALR2 (ENSCPBG00000028033) SRP68 (ENSCPBG00000028034) ENSCPBG00000028035 CDK3 (ENSCPBG00000028036) TEN1 (ENSCPBG00000028037) ACOX1 (ENSCPBG00000028038) FBF1 (ENSCPBG00000028039) MRPL38 (ENSCPBG00000028040) TRIM65 (ENSCPBG00000028041) ENSCPBG00000028043 WBP2 (ENSCPBG00000028044) UNC13D (ENSCPBG00000028045) UNK (ENSCPBG00000028046) ENSCPBG00000028048 ENSCPBG00000028053 ##35 GALK1 (ENSCPBG00000028055) ITGB4 (ENSCPBG00000028057) SAP30BP (ENSCPBG00000028059) RECQL5 (ENSCPBG00000028060) SMIM5 (ENSCPBG00000028063) ENSCPBG00000028064 LLGL2 (ENSCPBG00000028068) TSEN54 (ENSCPBG00000028071) ENSCPBG00000028077 CASKIN2 (ENSCPBG00000028080) TMEM94 (ENSCPBG00000028092) GRB2 (ENSCPBG00000028101) SLC25A19 (ENSCPBG00000028103) MIF4GD (ENSCPBG00000028104) MRPS7 (ENSCPBG00000028105) Ciona ANCESTRAL SPECIES ENSGT01100000263504.a.b.a.b.a.a ##35 Ciona savignyi MODERN SPECIES 1 ENSCSAVG00000009055 ENSCSAVG00000009082 ENSCSAVG00000009089 ENSCSAVG00000009114 ENSCSAVG00000009117 ENSCSAVG00000009120 ENSCSAVG00000009130 ENSCSAVG00000009138 ENSCSAVG00000009141 ENSCSAVG00000009147 ENSCSAVG00000009151 ENSCSAVG00000009153 ENSCSAVG00000009161 ENSCSAVG00000009199 ENSCSAVG00000009201 ENSCSAVG00000009292 ##35 ENSCSAVG00000009295 ENSCSAVG00000009307 ENSCSAVG00000009324 ENSCSAVG00000009478 ENSCSAVG00000009496 ENSCSAVG00000009556 ENSCSAVG00000009565 ENSCSAVG00000009568 ENSCSAVG00000009572 ENSCSAVG00000009574 ENSCSAVG00000009584 ENSCSAVG00000009586 ENSCSAVG00000009587 ENSCSAVG00000009588 ENSCSAVG00000009595 Chordata ANCESTRAL SPECIES ENSGT01100000263504.a.b.a.b.a.b ##35 Vertebrata ANCESTRAL SPECIES ENSGT01100000263504.a.b.a.b.a.b ##35 Gnathostomata ANCESTRAL SPECIES 739 ENSGT00530000063402.b #21 ENSGT01100000263504.a.b.a.b.a.b ##35 ENSGT00530000063651.a #23 ENSGT00390000003188 #25 Elephant shark MODERN SPECIES 1546 disp1 (ENSCMIG00000018158) susd4 (ENSCMIG00000018160) ENSCMIG00000018167 ENSCMIG00000018171 galnt14 (ENSCMIG00000018173) ENSCMIG00000018176 ENSCMIG00000018177 gpcpd1 (ENSCMIG00000018181) trmt6 (ENSCMIG00000018187) MCM8 (ENSCMIG00000018196) crls1 (ENSCMIG00000018210) ENSCMIG00000018213 FERMT1 (ENSCMIG00000018237) SDE2 (ENSCMIG00000018259) #21 ENSCMIG00000018263 #20 ENSCMIG00000018266 ##35 acbd3 (ENSCMIG00000018275) #23 lin9 (ENSCMIG00000018283) #25 SNX9 (ENSCMIG00000018290) SYNJ2 (ENSCMIG00000018293) ENSCMIG00000018295 ENSCMIG00000018296 ENSCMIG00000018302 mrpl2 (ENSCMIG00000018312) ENSCMIG00000018324 gtpbp2b (ENSCMIG00000018346) polh (ENSCMIG00000018367) lclat1 (ENSCMIG00000018373) ypel5 (ENSCMIG00000018374) ENSCMIG00000018378 actr2a (ENSCMIG00000018398) Euteleostomi ANCESTRAL SPECIES 1297 ENSGT01100000263504.a.b.a.b.a.b ##35 ENSGT00940000161634 Actinopterygii ANCESTRAL SPECIES 1095 ENSGT01100000263504.a.b.a.b.a.b ##35 ENSGT00940000161634 Neopterygii ANCESTRAL SPECIES 877 ENSGT01100000263504.a.b.a.b.a.b ##35 ENSGT00940000161634 Osteoglossocephalai ANCESTRAL SPECIES 1086 ENSGT01100000263504.a.b.a.b.a.b ##35 ENSGT00940000161634 Clupeocephala ANCESTRAL SPECIES 6 ENSGT00940000159641 ENSGT00940000154852.a ENSGT00530000066748 ENSGT00940000159861 ENSGT00390000008957 ENSGT00940000166280 ENSGT00940000171912 ENSGT00940000160173 ENSGT00940000158109 ENSGT00810000125570 ENSGT00940000160651 ENSGT00530000064671 ENSGT00940000159396 ENSGT00940000156610 ENSGT00390000000306 ENSGT01100000263504.a.b.a.b.a.b ##35 ENSGT00940000161634 ENSGT01100000263504.a.b.b.a.b ##35 ENSGT00390000006068 ENSGT00390000017838 ENSGT00510000048359 ENSGT00390000014665 ENSGT00390000001260 ENSGT00510000049239.b.b ENSGT00940000167095.B ENSGT00940000155267 ENSGT00940000160374 ENSGT00550000075088.a.a ENSGT00730000110939.a ENSGT01060000248742 ENSGT00940000154307.B Euteleosteomorpha ANCESTRAL SPECIES 715 ENSGT01100000263504.a.b.a.b.a.b ##35 ENSGT01030000235280 Acanthomorphata ANCESTRAL SPECIES 681 ENSGT01100000263504.a.b.a.b.a.b ##35 ENSGT01030000235280 Euacanthomorphacea ANCESTRAL SPECIES 8 ENSGT00940000162075 ENSGT00940000157522 ENSGT00940000156342.d ENSGT00940000161398.e ENSGT00940000164578.a.a ENSGT00390000004360.a.a ENSGT00950000183115.a.a.a ENSGT00940000160281 ENSGT00940000161057 ENSGT00990000206928 ENSGT00940000154866.A ENSGT00940000157514.a ENSGT00940000160500 ENSGT01090000260005.a.b.a.b.b.i ENSGT00390000017267 ENSGT01100000263504.a.b.a.b.a.b ##35 ENSGT01030000235280 ENSGT00940000164977.b ENSGT00550000074807.c ENSGT00390000001278.a ENSGT00940000153792.A ENSGT00940000156265 ENSGT00940000160533 ENSGT00530000064222.a ENSGT00940000158965 ENSGT00940000160957 ENSGT00940000165302 ENSGT00940000160692 ENSGT01030000234592.A.b.a ENSGT00390000017365.b ENSGT00990000207027 Percomorphaceae ANCESTRAL SPECIES 8 ENSGT00390000006095 ENSGT00940000162075 ENSGT00940000157522 ENSGT00940000156342.d ENSGT00940000161398.e ENSGT00940000164578.a.a ENSGT00390000004360.a.a ENSGT00950000183115.a.a.a ENSGT00940000160281 ENSGT00940000161057 ENSGT00940000154866.A ENSGT00940000157514.a ENSGT00940000160500 ENSGT01090000260005.a.b.a.b.b.i ENSGT00390000017267 ENSGT01100000263504.a.b.a.b.a.b ##35 ENSGT01030000235280 ENSGT00940000164977.b ENSGT00550000074807.c ENSGT00390000001278.a ENSGT00940000153792.A ENSGT00940000156265 ENSGT00940000160533 ENSGT00530000064222.a ENSGT00940000158965 ENSGT00940000160957 ENSGT00940000165302 ENSGT00940000160692 ENSGT01030000234592.A.b.a ENSGT00390000017365.b ENSGT00990000207027 Tiger tail seahorse MODERN SPECIES 124 ENSHCOG00000018700 col1a1b (ENSHCOG00000018831) UTS2R (ENSHCOG00000018844) ENSHCOG00000018852 ogfod3 (ENSHCOG00000018880) hexdc (ENSHCOG00000019854) cybc1 (ENSHCOG00000019895) narf (ENSHCOG00000019897) FDXR (ENSHCOG00000019912) cstf1 (ENSHCOG00000019972) mrpl38 (ENSHCOG00000019978) ENSHCOG00000020020 wbp2 (ENSHCOG00000020162) ENSHCOG00000020218 unk (ENSHCOG00000020255) ENSHCOG00000020262 ##35 ENSHCOG00000020292 zgc:194990 (ENSHCOG00000020304) itgb4 (ENSHCOG00000020991) sap30bp (ENSHCOG00000021023) ENSHCOG00000001835 ENPP7 (ENSHCOG00000001843) ENPP7 (ENSHCOG00000001851) ENSHCOG00000001855 RBFOX3 (ENSHCOG00000001863) c1qtnf1 (ENSHCOG00000001867) csnk1db (ENSHCOG00000001887) slc16a3b (ENSHCOG00000001897) ENSHCOG00000001904 ccdc57 (ENSHCOG00000001918) mettl9 (ENSHCOG00000001930) Percomorphaceae_B ANCESTRAL SPECIES 4 ENSGT00940000159664 ENSGT00940000156819.a.b ENSGT00940000157017.a.b.a ENSGT01090000260051.b.a.b ENSGT00390000005895 ENSGT00390000014852.a ENSGT00390000004691 ENSGT00940000153514.a.b ENSGT00940000178199 ENSGT00390000013574 ENSGT00900000141125 ENSGT00940000162951 ENSGT00530000063718.a.a ENSGT00730000110939.b ENSGT00940000159360 ENSGT01100000263504.a.b.a.b.a.b ##35 ENSGT00940000167259 ENSGT00940000163587.a.b.a.c.b ENSGT01100000263555.b ENSGT00390000007870 ENSGT00940000176223 ENSGT00390000018570.b.a ENSGT00940000167542 ENSGT00940000156486 ENSGT00940000153496.a.b.a ENSGT00940000154208.c.b ENSGT00940000158031.c ENSGT00940000163867 ENSGT00940000164726.b ENSGT00940000164900 ENSGT00940000169412 Ovalentaria ANCESTRAL SPECIES 11 ENSGT00940000158679 ENSGT00940000153972.B ENSGT00940000158793 ENSGT00390000016247 ENSGT00940000159193 ENSGT01010000228854 ENSGT00940000155457.a.a.d ENSGT00390000013593 ENSGT00940000157231.a.a ENSGT00390000017627.b ENSGT00530000063534.b ENSGT00940000155900.i ENSGT00940000156937.a.a ENSGT00950000183064.a.b.a.b ENSGT00940000154313.c.a ENSGT01100000263504.a.b.a.b.a.b ##35 ENSGT00940000164977.a ENSGT00390000002548 ENSGT00940000155573.g.b ENSGT00940000155478.hb.b ENSGT00450000040324.a.a.a ENSGT00940000164418.a.b ENSGT00950000182985.a.b.a ENSGT01030000234613.b.b.h ENSGT00940000159555.v.b ENSGT00950000182772.A.a.a.b.r.a ENSGT01100000264924 ENSGT00940000161313 ENSGT00940000158344.a.b ENSGT01030000234642.a.b.b.d.b.c.b ENSGT00940000162120.f.a Atherinomorphae ANCESTRAL SPECIES 14 ENSGT00940000158679 ENSGT00940000153972.B ENSGT00940000158793 ENSGT00390000016247 ENSGT00940000159193 ENSGT01010000228854 ENSGT00940000155457.a.a.d ENSGT00390000013593 ENSGT00940000157231.a.a ENSGT00390000017627.b ENSGT00530000063534.b ENSGT00940000155900.i ENSGT00940000156937.a.a ENSGT00950000183064.a.b.a.b ENSGT00940000154313.c.a ENSGT01100000263504.a.b.a.b.a.b ##35 ENSGT00940000164977.a ENSGT00390000002548 ENSGT00940000155573.g.b ENSGT00940000155478.hb.b ENSGT00450000040324.a.a.a ENSGT00940000164418.a.b ENSGT00950000182985.a.b.a ENSGT01030000234613.b.b.h ENSGT00940000159555.v.b ENSGT00950000182772.A.a.a.b.r.a ENSGT00940000161313 ENSGT00940000158344.a.b ENSGT01030000234642.a.b.b.d.b.c.b ENSGT00940000162120.f.a ENSGT00950000183079.A.b.c.b Oryzias ANCESTRAL SPECIES ENSGT01100000263504.a.b.a.b.a.b ##35 Oryzias_a ANCESTRAL SPECIES ENSGT01100000263504.a.b.a.b.a.b ##35 Chinese medaka MODERN SPECIES 5278 ENSOSIG00000004910 ##35 Cyprinodontiformes ANCESTRAL SPECIES 11 ENSGT00940000158679 ENSGT00940000153972.B ENSGT00940000158793 ENSGT00390000016247 ENSGT00940000159193 ENSGT01010000228854 ENSGT00940000155457.a.a.d ENSGT00390000013593 ENSGT00940000157231.a.a ENSGT00390000017627.b ENSGT00530000063534.b ENSGT00940000155900.i ENSGT00940000156937.a.a ENSGT00950000183064.a.b.a.b ENSGT00940000154313.c.a ENSGT01100000263504.a.b.a.b.a.b ##35 ENSGT00940000164977.a ENSGT00390000002548 ENSGT00940000155573.g.b ENSGT00940000155478.hb.b ENSGT00450000040324.a.a.a ENSGT00940000164418.a.b ENSGT00950000182985.a.b.a ENSGT01030000234613.b.b.h ENSGT00940000159555.v.b ENSGT00950000182772.A.a.a.b.r.a ENSGT00940000161313 ENSGT00940000158344.a.b ENSGT01030000234642.a.b.b.d.b.c.b ENSGT00940000162120.f.a ENSGT00950000183079.A.b.c.b Cyprinodontoidei ANCESTRAL SPECIES 5 ENSGT00940000166369 ENSGT00940000158679 ENSGT00940000153972.B ENSGT00940000158793 ENSGT00390000016247 ENSGT00940000159193 ENSGT00940000155457.a.a.d ENSGT00390000013593 ENSGT00940000157231.a.a ENSGT00390000017627.b ENSGT00530000063534.b ENSGT00940000155900.i ENSGT00940000156937.a.a ENSGT00950000183064.a.b.a.b ENSGT00940000154313.c.a ENSGT01100000263504.a.b.a.b.a.b ##35 ENSGT00940000164977.a ENSGT00390000002548 ENSGT00940000155573.g.b ENSGT00940000155478.hb.b ENSGT00450000040324.a.a.a ENSGT00940000164418.a.b ENSGT00950000182985.a.b.a ENSGT01030000234613.b.b.h ENSGT00940000159555.v.b ENSGT00950000182772.A.a.a.b.r.a ENSGT00940000161313 ENSGT00940000158344.a.b ENSGT01030000234642.a.b.b.d.b.c.b ENSGT00940000162120.f.a ENSGT00950000183079.A.b.c.b Poeciliinae ANCESTRAL SPECIES 10 ENSGT00390000004836 ENSGT00960000186809 ENSGT00940000159664 ENSGT01090000260051.b.a.b ENSGT00940000156819.a.b ENSGT00390000005895 ENSGT00390000014852.a ENSGT00390000004691 ENSGT00940000153514.a.b.n ENSGT00390000013574 ENSGT00900000141125 ENSGT00940000162951 ENSGT00530000063718.a.a ENSGT00730000110939.b ENSGT00940000159360 ENSGT01100000263504.a.b.a.b.a.b ##35 ENSGT00940000167259 ENSGT00940000163587.a.b.a.c.b ENSGT01100000263555.b.e ENSGT00390000007870 ENSGT00940000176223 ENSGT00390000018570.b.a ENSGT01080000257338.B.d ENSGT00390000013268 ENSGT00940000156486 ENSGT00940000153496.a.b.a ENSGT00940000154208.c.b ENSGT00940000158031.c ENSGT00940000163867.p ENSGT00940000163867.o ENSGT00940000164726.b Platyfish DUPLICATION Platyfish MODERN SPECIES 1 ENSXMAG00000029004 ENSXMAG00000025150 CACNA1G (ENSXMAG00000024852) ENSXMAG00000025211 ENSXMAG00000012752 ogfod3 (ENSXMAG00000012750) hexdc (ENSXMAG00000012742) cybc1 (ENSXMAG00000012738) narf (ENSXMAG00000022324) FDXR (ENSXMAG00000012696) mrpl38 (ENSXMAG00000012684) ENSXMAG00000012654 wbp2 (ENSXMAG00000021482) UNC13D (ENSXMAG00000012584) unk (ENSXMAG00000012562) ENSXMAG00000018951 ##35 ENSXMAG00000012547 zgc:194990 (ENSXMAG00000012540) ENSXMAG00000027175 itgb4 (ENSXMAG00000012430) sap30bp (ENSXMAG00000012425) ENSXMAG00000019470 CDR2L (ENSXMAG00000020888) ENSXMAG00000019468 MRPL58 (ENSXMAG00000012414) DAGLB (ENSXMAG00000012391) SPAG9 (ENSXMAG00000012309) tob1b (ENSXMAG00000019465) ENSXMAG00000012308 ENSXMAG00000012203 ENSXMAG00000023506 Platyfish MODERN SPECIES 2 PANX3 (ENSXMAG00000006184) pknox2 (ENSXMAG00000006176) tmem218 (ENSXMAG00000024362) ENSXMAG00000029727 ENSXMAG00000006163 robo3 (ENSXMAG00000006106) MSANTD2 (ENSXMAG00000006105) esama (ENSXMAG00000006099) fez1 (ENSXMAG00000006079) cfap58 (ENSXMAG00000006062) IGSF9B (ENSXMAG00000006054) jam3b (ENSXMAG00000006042) ENSXMAG00000024317 vps26bl (ENSXMAG00000022784) ARHGAP32 (ENSXMAG00000000842) ENSXMAG00000021108 ##35 crx (ENSXMAG00000021112) SLC7A1 (ENSXMAG00000016068) paxbp1 (ENSXMAG00000016037) cadm2a (ENSXMAG00000010551) ENSXMAG00000022967 LTN1 (ENSXMAG00000010574) tmem135 (ENSXMAG00000028963) HEPH (ENSXMAG00000010603) slc43a2b (ENSXMAG00000010628) PITPNA (ENSXMAG00000010641) INPP5K (ENSXMAG00000010655) nle1 (ENSXMAG00000010660) slc25a1a (ENSXMAG00000025409) ENSXMAG00000010703 ENSXMAG00000026041 Poecilia ANCESTRAL SPECIES 15 ENSGT00390000004836 ENSGT00960000186809 ENSGT00940000159664 ENSGT00940000157017.a.b.a ENSGT00940000156819.a.b ENSGT00390000005895 ENSGT00390000014852.a ENSGT00390000004691 ENSGT00940000153514.a.b.n ENSGT00390000013574 ENSGT00900000141125 ENSGT00940000162951 ENSGT00530000063718.a.a ENSGT00730000110939.b ENSGT00940000159360 ENSGT01100000263504.a.b.a.b.a.b ##35 ENSGT00940000167259 ENSGT00940000163587.a.b.a.c.b ENSGT01100000263555.b.e ENSGT00390000007870 ENSGT00940000176223 ENSGT00390000018570.b.a ENSGT01080000257338.B.d ENSGT00390000013268 ENSGT00940000156486 ENSGT00940000153496.a.b.a ENSGT00940000154208.c.b ENSGT00940000158031.c ENSGT00940000163867.p ENSGT00940000163867.o ENSGT00940000164726.b NAME_6 ANCESTRAL SPECIES ENSGT00940000153902.b.a ENSGT00390000004836 ENSGT00940000159664 ENSGT00940000157017.a.b.a ENSGT00940000156819.a.b ENSGT00390000005895 ENSGT00390000014852.a ENSGT00390000004691 ENSGT00940000153514.a.b.n ENSGT00390000013574 ENSGT00900000141125 ENSGT00940000162951 ENSGT00530000063718.a.a ENSGT00730000110939.b ENSGT00940000159360 ENSGT01100000263504.a.b.a.b.a.b ##35 ENSGT00940000167259 ENSGT00940000163587.a.b.a.c.b ENSGT01100000263555.b.e ENSGT00390000007870 ENSGT00940000176223 ENSGT00390000018570.b.a ENSGT01080000257338.B.d ENSGT00390000013268 ENSGT00940000156486.c ENSGT00940000153496.a.b.a ENSGT00940000154208.c.b ENSGT00940000158031.c ENSGT00940000163867.o ENSGT00940000164726.b ENSGT00940000164900 Amazon molly MODERN SPECIES 256 SPATA20 (ENSPFOG00000022764) CACNA1G (ENSPFOG00000018002) UTS2R (ENSPFOG00000018216) ENSPFOG00000022314 ENSPFOG00000020243 ogfod3 (ENSPFOG00000018219) hexdc (ENSPFOG00000018247) cybc1 (ENSPFOG00000018276) narf (ENSPFOG00000018290) FDXR (ENSPFOG00000018312) mrpl38 (ENSPFOG00000018349) ENSPFOG00000018360 wbp2 (ENSPFOG00000018368) UNC13D (ENSPFOG00000018382) unk (ENSPFOG00000018477) ENSPFOG00000018492 ##35 ENSPFOG00000018493 zgc:194990 (ENSPFOG00000018501) itgb4 (ENSPFOG00000018521) sap30bp (ENSPFOG00000018575) CDR2L (ENSPFOG00000018585) ENSPFOG00000020245 MRPL58 (ENSPFOG00000018595) DAGLB (ENSPFOG00000018611) SPAG9 (ENSPFOG00000018668) tob1b (ENSPFOG00000020246) ENSPFOG00000018726 WFIKKN2 (ENSPFOG00000018728) ENSPFOG00000018731 ENSPFOG00000018740 ENSPFOG00000018797 Guppy DUPLICATION Guppy MODERN SPECIES 449 ENSPREG00000019742 AMZ2 (ENSPREG00000019723) slc16a6a (ENSPREG00000019699) arsg (ENSPREG00000019672) WIPI1 (ENSPREG00000019633) prkar1ab (ENSPREG00000019609) fam20a (ENSPREG00000019571) myof (ENSPREG00000019335) narf (ENSPREG00000019279) FDXR (ENSPREG00000019265) mrpl38 (ENSPREG00000019258) ENSPREG00000019252 wbp2 (ENSPREG00000019240) UNC13D (ENSPREG00000019146) unk (ENSPREG00000019108) ENSPREG00000019092 ##35 ENSPREG00000019016 zgc:194990 (ENSPREG00000018963) itgb4 (ENSPREG00000018879) sap30bp (ENSPREG00000018844) ENSPREG00000018835 CDR2L (ENSPREG00000018824) ENSPREG00000018816 ENSPREG00000018808 DAGLB (ENSPREG00000018790) ENSPREG00000018747 ENSPREG00000018707 tob1b (ENSPREG00000018697) ENSPREG00000018689 ENSPREG00000018577 ENSPREG00000018508 Guppy MODERN SPECIES 444 dscama (ENSPREG00000010359) tmprss2 (ENSPREG00000010432) acat1 (ENSPREG00000010457) mmp30 (ENSPREG00000010492) ENSPREG00000010509 ENSPREG00000010537 acer3 (ENSPREG00000010558) serpinh1a (ENSPREG00000010587) GDPD5 (ENSPREG00000010612) samsn1b (ENSPREG00000010675) ENSPREG00000010684 usp25 (ENSPREG00000010697) WSCD1 (ENSPREG00000010731) vps26bl (ENSPREG00000010746) ARHGAP32 (ENSPREG00000010772) ENSPREG00000010865 ##35 crx (ENSPREG00000010876) slc8a2a (ENSPREG00000010899) nccrp1 (ENSPREG00000010962) ckma (ENSPREG00000011025) MARK4 (ENSPREG00000011134) ENSPREG00000011202 ppp1r14aa (ENSPREG00000011215) dlb (ENSPREG00000011227) zgc:153990 (ENSPREG00000011254) capns1b (ENSPREG00000011293) nova1 (ENSPREG00000011614) kptn (ENSPREG00000011640) hnrnpl (ENSPREG00000011662) irf2bp1 (ENSPREG00000011689) micu2 (ENSPREG00000011698) NAME_4 ANCESTRAL SPECIES 113 ENSGT00390000004360.a.a ENSGT00950000183115.a.a.a ENSGT00950000183136.b.b.d ENSGT00940000160281 ENSGT00940000161057 ENSGT00940000154866.A ENSGT00940000157514.a ENSGT00940000160500 ENSGT01090000260005.a.b.a.b.b.i ENSGT00390000017267 ENSGT01100000263504.a.b.a.b.a.b ##35 ENSGT00940000161634 ENSGT00550000074807.c ENSGT00940000153792.A ENSGT00940000156265 ENSGT00940000160533 ENSGT00530000064222.a ENSGT00940000158965 ENSGT00940000160957 ENSGT00940000165302 ENSGT00940000160692 ENSGT01030000234592.A.b.a ENSGT00390000017365.b.yb.a ENSGT00940000159302 ENSGT00940000165141.a ENSGT00940000154525.b.b Sheepshead minnow DUPLICATION Sheepshead minnow MODERN SPECIES 597 nop53 (ENSCVAG00000005940) h3f3b.1 (ENSCVAG00000005957) ##35 ENSCVAG00000005968 ##35 ENSCVAG00000005976 psma6l (ENSCVAG00000006047) sars2 (ENSCVAG00000006065) si:dkey-260j18.2 (ENSCVAG00000006078) slc5a2 (ENSCVAG00000006118) fbxo46 (ENSCVAG00000006128) coq8b (ENSCVAG00000006139) numbl (ENSCVAG00000006158) ENSCVAG00000006197 dpf1 (ENSCVAG00000000179) ENSCVAG00000006246 ENSCVAG00000006269 Sheepshead minnow MODERN SPECIES 381 MSANTD2 (ENSCVAG00000012252) esama (ENSCVAG00000012231) fez1 (ENSCVAG00000012224) cfap58 (ENSCVAG00000012200) ARHGAP32 (ENSCVAG00000011908) vps26bl (ENSCVAG00000011855) jam3b (ENSCVAG00000011837) IGSF9B (ENSCVAG00000011804) ENSCVAG00000011693 ENSCVAG00000011676 ##35 crx (ENSCVAG00000011652) kptn (ENSCVAG00000011635) nova1 (ENSCVAG00000011460) tiprl (ENSCVAG00000011443) AMOT (ENSCVAG00000011387) ENSCVAG00000011303 Aplocheiloidei ANCESTRAL SPECIES 182 ENSGT00940000154313.c.a ENSGT01100000263504.a.b.a.b.a.b ##35 ENSGT00940000156937.a.a ENSGT01100000263504.a.b.a.a.hb.b #22 ENSGT00940000164977.a ENSGT00390000002548 ENSGT00940000155573.g.b ENSGT00940000155478.hb.b ENSGT00450000040324.a.a.a ENSGT00940000164418.a.b ENSGT00950000182985.a.b.a ENSGT01030000234613.b.b.h ENSGT00940000159555.v.b ENSGT00950000182772.A.a.a.b.r.a Turquoise killifish DUPLICATION Turquoise killifish MODERN SPECIES 1620 BBX (ENSNFUG00015013263) ENSNFUG00015013258 dlg2 (ENSNFUG00015013151) ENSNFUG00015013139 ZPLD1 (ENSNFUG00015013117) HLCS (ENSNFUG00015013111) ENSNFUG00015013102 tiprl (ENSNFUG00015013098) ENSNFUG00015013094 AMOT (ENSNFUG00015013083) smfn (ENSNFUG00015012356) IGSF9B (ENSNFUG00015012255) jam3b (ENSNFUG00015012223) ENSNFUG00015012220 ARHGAP32 (ENSNFUG00015011007) ENSNFUG00015010917 ##35 crx (ENSNFUG00015010903) kptn (ENSNFUG00015010864) nova1 (ENSNFUG00015010809) CAPNS1A (ENSNFUG00015010782) dlb (ENSNFUG00015010772) PPP1R14AA (ENSNFUG00015010762) MARK4 (ENSNFUG00015010697) ckma (ENSNFUG00015009641) zgc:153990 (ENSNFUG00015009613) bhlha9 (ENSNFUG00015009595) ENSNFUG00015009584 EFHA1 (ENSNFUG00015009569) Nfu_g_1_017135 (ENSNFUG00015009563) Nfu_g_1_017124 (ENSNFUG00015009426) slc8a2a (ENSNFUG00015009315) Turquoise killifish DUPLICATION Turquoise killifish MODERN SPECIES 1610 PFDN6 (ENSNFUG00015001589) GUF1 (ENSNFUG00015001648) CABZ01072856.1 (ENSNFUG00015001860) ENSNFUG00015001931 gabra4 (ENSNFUG00015001945) CCDC37 (ENSNFUG00015001957) CABZ01003022.1 (ENSNFUG00015001969) SMAD5 (ENSNFUG00015001992) ENSNFUG00015002010 syvn1 (ENSNFUG00015002012) GPR137 (ENSNFUG00015002014) OLA.28460 (ENSNFUG00015002019) C14H8ORF40 (ENSNFUG00015002046) her5 (ENSNFUG00015002048) her11 (ENSNFUG00015002050) ENSNFUG00015002053 ##35 EFHA2 (ENSNFUG00015002127) FGF20B (ENSNFUG00015002324) ENSNFUG00015002328 CNOT7 (ENSNFUG00015002334) mtmr7a (ENSNFUG00015002346) ENSNFUG00015002389 SLC7A2 (ENSNFUG00015002400) pdgfrl (ENSNFUG00015002432) ENSNFUG00015002441 SYBL1 (ENSNFUG00015002463) ENSNFUG00015002471 ENSNFUG00015002478 ENSNFUG00015002484 ENSNFUG00015002486 ENSNFUG00015002488 Turquoise killifish MODERN SPECIES 1199 H3F3B.1 (ENSNFUG00015016216) ##35 Ovalentaria_B ANCESTRAL SPECIES 11 ENSGT00390000006095 ENSGT00940000157522 ENSGT00940000156342.d ENSGT00940000161398.e ENSGT00940000164578.a.a ENSGT00390000004360.a.a ENSGT00950000183115.a.a.a ENSGT00950000183136.b.b.d ENSGT00940000160281 ENSGT00940000161057 ENSGT00940000154866.A ENSGT00940000157514.a ENSGT00940000160500 ENSGT01090000260005.a.b.a.b.b.i ENSGT00390000017267 ENSGT01100000263504.a.b.a.b.a.b ##35 ENSGT00940000164977.b ENSGT00550000074807.c ENSGT00390000001278.a ENSGT00940000153792.A ENSGT00940000156265 ENSGT00940000160533 ENSGT00530000064222.a ENSGT00940000158965 ENSGT00940000160957 ENSGT00940000165302 ENSGT00940000160692 ENSGT01030000234592.A.b.a ENSGT00390000017365.b ENSGT00990000207027 ENSGT00940000159302 Cichlidae ANCESTRAL SPECIES 4 ENSGT00940000158679 ENSGT00940000153972.B ENSGT00940000158793 ENSGT00390000016247 ENSGT00940000159193 ENSGT00940000155457.a.a.d ENSGT00390000013593 ENSGT00940000157231.a.a ENSGT00390000017627.b ENSGT00530000063534.b ENSGT00940000177515 ENSGT00940000155900.i ENSGT00940000156937.a.a ENSGT00950000183064.a.b.a.b ENSGT00940000154313.c.a ENSGT01100000263504.a.b.a.b.a.b ##35 ENSGT00940000164977.a ENSGT00390000002548 ENSGT00940000155573.g.b ENSGT00940000155478.hb.b ENSGT00450000040324.a.a.a ENSGT00940000164418.a.b ENSGT00950000182985.a.b.a ENSGT01030000234613.b.b.h ENSGT00940000159555.v.b ENSGT00950000182772.A.a.a.b.r.a ENSGT01100000264924 ENSGT00940000161313 ENSGT00940000158344.a.b ENSGT01030000234642.a.b.b.d.b.c.b ENSGT00940000162120.f.a Midas cichlid MODERN SPECIES 155 opcml (ENSACIG00000017253) PANX3 (ENSACIG00000017269) pknox2 (ENSACIG00000017278) tmem218 (ENSACIG00000017293) ENSACIG00000017304 robo3 (ENSACIG00000017343) MSANTD2 (ENSACIG00000017603) esama (ENSACIG00000017617) fez1 (ENSACIG00000017636) ENSACIG00000017650 IGSF9B (ENSACIG00000017662) jam3b (ENSACIG00000017694) vps26bl (ENSACIG00000017742) ARHGAP32 (ENSACIG00000017763) ENSACIG00000017795 ##35 crx (ENSACIG00000017800) kptn (ENSACIG00000017806) nova1 (ENSACIG00000017818) capns1b (ENSACIG00000017831) zgc:153990 (ENSACIG00000017880) dlb (ENSACIG00000017888) ppp1r14aa (ENSACIG00000017904) ENSACIG00000017915 MARK4 (ENSACIG00000017934) ckma (ENSACIG00000017971) nccrp1 (ENSACIG00000017989) slc8a2a (ENSACIG00000018016) ENSACIG00000018047 akt2l (ENSACIG00000018062) Pseudocrenilabrinae ANCESTRAL SPECIES 29 ENSGT00940000158679 ENSGT00940000153972.B ENSGT00940000158793 ENSGT00390000016247 ENSGT00940000159193 ENSGT00940000155457.a.a.d ENSGT00390000013593 ENSGT00940000157231.a.a ENSGT00390000017627.b ENSGT00530000063534.b ENSGT00940000177515 ENSGT00940000155900.i ENSGT00940000156937.a.a ENSGT00950000183064.a.b.a.b ENSGT00940000154313.c.a ENSGT01100000263504.a.b.a.b.a.b ##35 ENSGT00940000164977.a ENSGT00390000002548 ENSGT00940000155573.g.b ENSGT00940000155478.hb.b ENSGT00450000040324.a.a.a ENSGT00940000164418.a.b ENSGT00950000182985.a.b.a ENSGT01030000234613.b.b.h ENSGT00940000159555.v.b ENSGT00950000182772.A.a.a.b.r.a ENSGT01100000264924 ENSGT00940000161313 ENSGT00940000158344.a.b ENSGT01030000234642.a.b.b.d.b.c.b ENSGT00940000162120.f.a Pseudocrenilabrinae_A ANCESTRAL SPECIES 39 ENSGT00940000166369 ENSGT00940000158679 ENSGT00940000153972.B ENSGT00940000158793 ENSGT00390000016247 ENSGT00940000159193 ENSGT00940000155457.a.a.d ENSGT00390000013593 ENSGT00940000157231.a.a ENSGT00390000017627.b ENSGT00940000177515 ENSGT00940000155900.i ENSGT00940000156937.a.a ENSGT00950000183064.a.b.a.b ENSGT00940000154313.c.a ENSGT01100000263504.a.b.a.b.a.b ##35 ENSGT00940000164977.a ENSGT00390000002548 ENSGT00940000155573.g.b ENSGT00940000155478.hb.b ENSGT00450000040324.a.a.a ENSGT00940000164418.a.b ENSGT00950000182985.a.b.a ENSGT01030000234613.b.b.h ENSGT00940000159555.v.b ENSGT00950000182772.A.a.a.b.r.a ENSGT01100000264924 ENSGT00940000161313 ENSGT00940000158344.a.b ENSGT01030000234642.a.b.b.d.b.c.b ENSGT00940000162120.f.a Haplochromini ANCESTRAL SPECIES 36 ENSGT00940000166369 ENSGT00940000158679.q ENSGT00940000153972.B ENSGT00940000158793 ENSGT00390000016247 ENSGT00940000159193 ENSGT00940000155457.a.a.d ENSGT00390000013593 ENSGT00940000157231.a.a ENSGT00390000017627.b ENSGT00940000177515 ENSGT00940000155900.i ENSGT00940000156937.a.a ENSGT00950000183064.a.b.a.b ENSGT00940000154313.c.a.n.b ENSGT01100000263504.a.b.a.b.a.b ##35 ENSGT00940000164977.a ENSGT00390000002548 ENSGT00940000155573.g.b ENSGT00940000155478.hb.b ENSGT00450000040324.a.a.a ENSGT00940000164418.a.b ENSGT00950000182985.a.b.a ENSGT01030000234613.b.b.h ENSGT00940000159555.v.b ENSGT00950000182772.A.a.a.b.r.a ENSGT01100000264924 ENSGT00940000161313 ENSGT00940000158344.a.b ENSGT01030000234642.a.b.b.d.b.c.b ENSGT00940000162120.f.a Burton s mouthbrooder MODERN SPECIES 833 jam3b (ENSHBUG00000018364) vps26bl (ENSHBUG00000018400) ARHGAP32 (ENSHBUG00000018445) ENSHBUG00000018473 ##35 crx (ENSHBUG00000018495) kptn (ENSHBUG00000018533) nova1 (ENSHBUG00000018561) Haplochromini_A ANCESTRAL SPECIES 24 ENSGT00440000033742.a.a ENSGT00940000153801.a ENSGT00940000159641 ENSGT00940000154852.a ENSGT00530000066748 ENSGT00940000159861 ENSGT00940000157969 ENSGT00940000160173 ENSGT00940000158109 ENSGT00810000125570 ENSGT00940000160651 ENSGT00530000064671 ENSGT00940000159396 ENSGT00940000156610 ENSGT00390000000306 ENSGT01100000263504.a.b.a.b.a.b ##35 ENSGT01030000235280 ENSGT00940000154307.A ENSGT00390000006068 ENSGT00390000017838 ENSGT00510000048359 ENSGT00390000014665 ENSGT00940000155267 ENSGT00940000160374 ENSGT00550000075088.a.a ENSGT00940000167095.A ENSGT00940000166841 ENSGT00940000154323.a ENSGT00940000160435 ENSGT00390000002866.a ENSGT00940000164729.a.b Haplochromini_B ANCESTRAL SPECIES 46 ENSGT00940000158679.q ENSGT00940000178436.a ENSGT00940000153972.B ENSGT00940000158793 ENSGT00390000016247 ENSGT00940000159193 ENSGT00940000155457.a.a.d ENSGT00390000013593 ENSGT00940000157231.a.a ENSGT00390000017627.b ENSGT00940000177515 ENSGT00940000155900.i ENSGT00940000156937.a.a ENSGT00950000183064.a.b.a.b ENSGT00940000154313.c.a.n.b ENSGT01100000263504.a.b.a.b.a.b ##35 ENSGT00940000154313.c.a.n.a ENSGT01100000263504.a.b.a.a #22 ENSGT00940000164977.a ENSGT00390000002548 ENSGT00940000155573.g.b ENSGT00940000155478.hb.b ENSGT00450000040324.a.a.a ENSGT00940000164418.a.b ENSGT00950000182985.a.b.a ENSGT01030000234613.b.b.h ENSGT00940000159555.v.b ENSGT00950000182772.A.a.a.b.r.a ENSGT01100000264924 ENSGT00940000161313 ENSGT00940000158344.a.b Eastern happy MODERN SPECIES 1 tmem218 (ENSACLG00000002173) ENSACLG00000002183 robo3 (ENSACLG00000002369) ENSACLG00000002417 MSANTD2 (ENSACLG00000002427) esama (ENSACLG00000002453) fez1 (ENSACLG00000002458) ENSACLG00000002495 IGSF9B (ENSACLG00000002515) ENSACLG00000002579 ENSACLG00000002607 jam3b (ENSACLG00000002625) vps26bl (ENSACLG00000002642) ENSACLG00000002681 ARHGAP32 (ENSACLG00000002707) ENSACLG00000002796 ##35 ENSACLG00000002816 ENSACLG00000002837 ##35 ENSACLG00000002860 h3f3c (ENSACLG00000002870) #22 crx (ENSACLG00000002886) ENSACLG00000002904 kptn (ENSACLG00000002914) nova1 (ENSACLG00000003002) capns1b (ENSACLG00000003030) zgc:153990 (ENSACLG00000003052) dlb (ENSACLG00000003314) ppp1r14aa (ENSACLG00000003348) ENSACLG00000003357 MARK4 (ENSACLG00000003377) ckma (ENSACLG00000003506) P. nyererei MODERN SPECIES wdr24 (ENSPNYG00000023560) anks3 (ENSPNYG00000023557) zgc:112185 (ENSPNYG00000023556) ENSPNYG00000023555 ##35 ENSPNYG00000023553 Pomacentridae ANCESTRAL SPECIES 5 ENSGT00390000006095 ENSGT00940000157522 ENSGT00940000156342.d ENSGT00940000161398.e ENSGT00940000164578.a.a ENSGT00390000004360.a.a ENSGT00950000183115.a.a.a ENSGT00950000183136.b.b.d ENSGT00940000160281 ENSGT00940000161057 ENSGT00940000154866.A ENSGT00940000157514.a ENSGT00940000160500 ENSGT01090000260005.a.b.a.b.b.i ENSGT00390000017267 ENSGT01100000263504.a.b.a.b.a.b ##35 ENSGT00940000164977.b ENSGT00550000074807.c ENSGT00390000001278.a ENSGT00940000153792.A ENSGT00940000156265 ENSGT00940000160533 ENSGT00530000064222.a ENSGT00940000158965 ENSGT00940000160957 ENSGT00940000165302 ENSGT00940000160692 ENSGT01030000234592.A.b.a ENSGT00390000017365.b.dc.a ENSGT00390000017365.b.dc.b ENSGT00940000159302 Pomacentridae_A ANCESTRAL SPECIES 4 ENSGT00390000006095 ENSGT00940000157522 ENSGT00940000156342.d ENSGT00940000161398.e ENSGT00940000164578.a.a ENSGT00390000004360.a.a ENSGT00950000183115.a.a.a ENSGT00950000183136.b.b.d ENSGT00940000160281 ENSGT00940000161057 ENSGT00940000154866.A ENSGT00940000157514.a ENSGT00940000160500 ENSGT01090000260005.a.b.a.b.b.i ENSGT00390000017267 ENSGT01100000263504.a.b.a.b.a.b ##35 ENSGT00940000164977.b ENSGT00550000074807.c ENSGT00390000001278.a ENSGT00940000153792.A ENSGT00940000156265 ENSGT00940000160533 ENSGT00530000064222.a ENSGT00940000158965 ENSGT00940000160957 ENSGT00940000165302 ENSGT00940000160692 ENSGT01030000234592.A.b.a ENSGT00390000017365.b.dc.a ENSGT00390000017365.b.dc.b ENSGT00940000159302 Amphiprion ANCESTRAL SPECIES 6 ENSGT00940000156342.d ENSGT00940000161398.e ENSGT00940000164578.a.a ENSGT00390000004360.a.a ENSGT00950000183115.a.a.a ENSGT00950000183136.b.b.d.c ENSGT01040000240444.A.a.a.b ENSGT00950000183136.b.b.d.d ENSGT00940000160281 ENSGT00940000161057 ENSGT00940000154866.A ENSGT00940000157514.a ENSGT00940000160500 ENSGT01090000260005.a.b.a.b.b.i ENSGT00390000017267 ENSGT01100000263504.a.b.a.b.a.b ##35 ENSGT00940000164977.b ENSGT00550000074807.c ENSGT00390000001278.a ENSGT00940000153792.A ENSGT00940000156265 ENSGT00940000160533 ENSGT00530000064222.a ENSGT00940000158965 ENSGT00940000160957 ENSGT00940000165302 ENSGT00940000160692 ENSGT01030000234592.A.b.a.c ENSGT01030000234592.A.b.a.d ENSGT00390000017365.b.dc.a ENSGT00390000017365.b.dc.b Clown anemonefish MODERN SPECIES 630 ENSAOCG00000006910 sirt2 (ENSAOCG00000006930) dmac2 (ENSAOCG00000006943) GJD2 (ENSAOCG00000006957) nop53 (ENSAOCG00000007002) ENSAOCG00000007021 ##35 ENSAOCG00000007027 ##35 ENSAOCG00000007046 psma6l (ENSAOCG00000007062) ENSAOCG00000007096 sars2 (ENSAOCG00000007157) si:dkey-260j18.2 (ENSAOCG00000007181) slc5a2 (ENSAOCG00000007543) fbxo46 (ENSAOCG00000007609) coq8b (ENSAOCG00000007653) numbl (ENSAOCG00000007700) Orange clownfish DUPLICATION Orange clownfish MODERN SPECIES 10 decr2 (ENSAPEG00000007393) RDH13 (ENSAPEG00000007357) SBK1 (ENSAPEG00000007332) ENSAPEG00000007313 NLRC3 (ENSAPEG00000007222) ENSAPEG00000007171 ENSAPEG00000007121 ENSAPEG00000007091 rhot2 (ENSAPEG00000007025) h1-0 (ENSAPEG00000007012) rhbdl1 (ENSAPEG00000006931) zgc:112496 (ENSAPEG00000006883) wdr24 (ENSAPEG00000006843) anks3 (ENSAPEG00000006819) zgc:112185 (ENSAPEG00000006804) ENSAPEG00000006779 ##35 ENSAPEG00000006774 ENSAPEG00000006754 ENSAPEG00000006749 ENSAPEG00000006739 gnptg (ENSAPEG00000006724) tsr3 (ENSAPEG00000006710) pdpk1b (ENSAPEG00000006656) kctd5a (ENSAPEG00000006636) ube2ia (ENSAPEG00000006614) ENSAPEG00000006603 ENSAPEG00000006596 ccdc189 (ENSAPEG00000006570) phkg2 (ENSAPEG00000006543) RNF40 (ENSAPEG00000006447) ENSAPEG00000006427 Orange clownfish MODERN SPECIES 23 ENSAPEG00000024627 ENSAPEG00000024624 ENSAPEG00000024615 ITM2C (ENSAPEG00000024612) lpar5b (ENSAPEG00000024607) ENSAPEG00000024604 ENSAPEG00000024601 ENSAPEG00000024599 meis3 (ENSAPEG00000024596) ENSAPEG00000024591 selenou1b (ENSAPEG00000024587) sirt2 (ENSAPEG00000024575) dmac2 (ENSAPEG00000024572) GJD2 (ENSAPEG00000024568) nop53 (ENSAPEG00000024564) ENSAPEG00000024555 ##35 H3-3A (ENSAPEG00000024548) ##35 ENSAPEG00000024544 psma6l (ENSAPEG00000024531) ENSAPEG00000024523 sars2 (ENSAPEG00000024501) si:dkey-260j18.2 (ENSAPEG00000024487) slc5a2 (ENSAPEG00000024478) fbxo46 (ENSAPEG00000024474) coq8b (ENSAPEG00000024463) ENSAPEG00000024454 ENSAPEG00000024434 dpf1 (ENSAPEG00000024421) ENSAPEG00000024409 ENSAPEG00000024402 ENSAPEG00000024392 Percomorphaceae_C ANCESTRAL SPECIES 9 ENSGT00390000006095 ENSGT00940000157522 ENSGT00940000156342.d ENSGT00940000161398.e ENSGT00940000164578.a.a ENSGT00390000004360.a.a ENSGT00950000183115.a.a.a ENSGT00950000183136.b.b.d ENSGT00940000160281 ENSGT00940000161057 ENSGT00940000154866.A ENSGT00940000157514.a ENSGT00940000160500 ENSGT01090000260005.a.b.a.b.b.i ENSGT00390000017267 ENSGT01100000263504.a.b.a.b.a.b ##35 ENSGT00940000164977.b ENSGT00550000074807.c ENSGT00390000001278.a ENSGT00940000153792.A ENSGT00940000156265 ENSGT00940000160533 ENSGT00530000064222.a ENSGT00940000158965 ENSGT00940000160957 ENSGT00940000165302 ENSGT00940000160692 ENSGT01030000234592.A.b.a ENSGT00390000017365.b ENSGT01030000236106 ENSGT00940000159302 Percomorphaceae_D ANCESTRAL SPECIES 16 ENSGT00940000166369 ENSGT00940000158679 ENSGT00940000153972.B ENSGT00940000158793 ENSGT00390000016247 ENSGT00940000159193 ENSGT00940000155457.a.a.d ENSGT00390000013593 ENSGT00940000157231.a.a ENSGT00390000017627.b ENSGT00530000063534.b ENSGT00940000155900.i ENSGT00940000156937.a.a ENSGT00950000183064.a.b.a.b ENSGT00940000154313.c.a ENSGT01100000263504.a.b.a.b.a.b ##35 ENSGT00940000164977.a ENSGT00390000002548 ENSGT00940000155573.g.b ENSGT00940000155478.hb.b ENSGT00450000040324.a.a.a ENSGT00940000164418.a.b ENSGT00950000182985.a.b.a ENSGT01030000234613.b.b.h ENSGT00940000159555.v.b ENSGT00950000182772.A.a.a.b.r.a ENSGT01100000264924 ENSGT00940000161313 ENSGT00940000158344.a.b ENSGT01030000234642.a.b.b.d.b.c.b ENSGT00940000162120.f.a Anabantaria ANCESTRAL SPECIES 13 ENSGT00940000166369 ENSGT00940000158679 ENSGT00940000153972.B ENSGT00940000158793 ENSGT00390000016247 ENSGT00940000159193 ENSGT00940000155457.a.a.d ENSGT00390000013593 ENSGT00940000157231.a.a ENSGT00390000017627.b ENSGT00530000063534.b ENSGT00940000155900.i ENSGT00940000156937.a.a ENSGT00950000183064.a.b.a.b ENSGT00940000154313.c.a ENSGT01100000263504.a.b.a.b.a.b ##35 ENSGT00940000164977.a ENSGT00390000002548 ENSGT00940000155573.g.b ENSGT00940000155478.hb.b ENSGT00450000040324.a.a.a ENSGT00940000164418.a.b ENSGT00950000182985.a.b.a ENSGT01030000234613.b.b.h ENSGT00940000159555.v.b ENSGT01070000253869 ENSGT00950000182772.A.a.a.b.r.a ENSGT01100000264924 ENSGT00940000161313 ENSGT00940000158344.a.b ENSGT01030000234642.a.b.b.d.b.c.b Anabantoidei ANCESTRAL SPECIES 12 ENSGT00940000166369 ENSGT00940000158679 ENSGT00940000153972.B ENSGT00940000158793 ENSGT00390000016247 ENSGT00940000159193 ENSGT00940000155457.a.a.d ENSGT00390000013593 ENSGT00940000157231.a.a ENSGT00390000017627.b ENSGT00530000063534.b ENSGT00940000155900.i ENSGT00940000156937.a.a ENSGT00950000183064.a.b.a.b ENSGT00940000154313.c.a ENSGT01100000263504.a.b.a.b.a.b ##35 ENSGT00940000164977.a ENSGT00390000002548 ENSGT00940000155573.g.b ENSGT00940000155478.hb.b ENSGT00450000040324.a.a.a ENSGT00940000164418.a.b ENSGT00950000182985.a.b.a ENSGT01030000234613.b.b.h ENSGT00940000159555.v.b ENSGT01070000253869 ENSGT00950000182772.A.a.a.b.r.a ENSGT01100000264924 ENSGT00940000161313 ENSGT00940000158344.a.b ENSGT01030000234642.a.b.b.d.b.c.b Siamese fighting fish MODERN SPECIES 5 ntm (ENSBSLG00000003758) opcml (ENSBSLG00000003696) PANX3 (ENSBSLG00000003676) pknox2 (ENSBSLG00000003658) tmem218 (ENSBSLG00000003626) ENSBSLG00000003595 robo3 (ENSBSLG00000002885) MSANTD2 (ENSBSLG00000002851) esama (ENSBSLG00000002834) fez1 (ENSBSLG00000002812) cfap58 (ENSBSLG00000002656) IGSF9B (ENSBSLG00000002382) jam3b (ENSBSLG00000020340) vps26bl (ENSBSLG00000020325) ARHGAP32 (ENSBSLG00000019748) ENSBSLG00000019725 ##35 crx (ENSBSLG00000019718) kptn (ENSBSLG00000019606) nova1 (ENSBSLG00000019582) capns1b (ENSBSLG00000019569) zgc:153990 (ENSBSLG00000019557) dlb (ENSBSLG00000019539) ppp1r14aa (ENSBSLG00000019532) EXOC3L2 (ENSBSLG00000019503) MARK4 (ENSBSLG00000018869) ENSBSLG00000018729 ckma (ENSBSLG00000018709) nccrp1 (ENSBSLG00000018701) slc8a2a (ENSBSLG00000018694) hnrnpl (ENSBSLG00000018681) irf2bp1 (ENSBSLG00000018678) Zig-zag eel DUPLICATION Zig-zag eel MODERN SPECIES 10 telo2 (ENSMAMG00000010100) rab11fip3 (ENSMAMG00000010078) decr2 (ENSMAMG00000010056) ENSMAMG00000010045 ENSMAMG00000010387 ENSMAMG00000010023 ENSMAMG00000010013 WDR90 (ENSMAMG00000025729) rhot2 (ENSMAMG00000009929) h1-0 (ENSMAMG00000009899) rhbdl1 (ENSMAMG00000009868) zgc:112496 (ENSMAMG00000009861) wdr24 (ENSMAMG00000009856) anks3 (ENSMAMG00000009842) zgc:112185 (ENSMAMG00000009837) ENSMAMG00000009830 ##35 ENSMAMG00000025403 ENSMAMG00000009816 ENSMAMG00000009800 ENSMAMG00000009795 gnptg (ENSMAMG00000009711) ENSMAMG00000009692 pdpk1b (ENSMAMG00000009646) ENSMAMG00000009623 ENSMAMG00000009603 ENSMAMG00000009588 ENSMAMG00000009409 ENSMAMG00000009389 ENSMAMG00000009367 ENSMAMG00000009321 ENSMAMG00000009313 Zig-zag eel MODERN SPECIES 5 ENSMAMG00000027294 ntm (ENSMAMG00000001262) opcml (ENSMAMG00000001022) ENSMAMG00000000991 pknox2 (ENSMAMG00000000936) tmem218 (ENSMAMG00000000920) ENSMAMG00000000838 robo3 (ENSMAMG00000000724) ENSMAMG00000000688 esama (ENSMAMG00000000668) fez1 (ENSMAMG00000000642) ENSMAMG00000000624 IGSF9B (ENSMAMG00000000543) ENSMAMG00000000532 VPS26B (ENSMAMG00000000497) ENSMAMG00000012684 ##35 ENSMAMG00000021282 ENSMAMG00000021274 nova1 (ENSMAMG00000021272) capns1a (ENSMAMG00000026815) zgc:153990 (ENSMAMG00000021269) dlb (ENSMAMG00000021264) ppp1r14aa (ENSMAMG00000021263) ENSMAMG00000021259 ENSMAMG00000021253 ENSMAMG00000021246 ckma (ENSMAMG00000028699) nccrp1 (ENSMAMG00000021240) slc8a2a (ENSMAMG00000021235) hnrnpl (ENSMAMG00000021232) ENSMAMG00000021231 Carangaria ANCESTRAL SPECIES 8 ENSGT00390000006095 ENSGT00940000157522 ENSGT00940000156342.d ENSGT00940000161398.e ENSGT00940000164578.a.a ENSGT00390000004360.a.a ENSGT00950000183115.a.a.a ENSGT00950000183136.b.b.d ENSGT00940000160281 ENSGT00940000161057 ENSGT00940000154866.A ENSGT00940000157514.a ENSGT00940000160500 ENSGT01090000260005.a.b.a.b.b.i ENSGT00390000017267 ENSGT01100000263504.a.b.a.b.a.b ##35 ENSGT00940000164977.b ENSGT00550000074807.c ENSGT00390000001278.a ENSGT00940000153792.A ENSGT00940000156265 ENSGT00940000160533 ENSGT00530000064222.a ENSGT00940000158965 ENSGT00940000160957 ENSGT00940000165302 ENSGT00940000160692 ENSGT01030000234592.A.b.a ENSGT00390000017365.b ENSGT00940000159302 ENSGT00940000165141.a Carangaria_A ANCESTRAL SPECIES ENSGT01100000263504.a.b.a.b.a.b ##35 Seriola ANCESTRAL SPECIES ENSGT01100000263504.a.b.a.b.a.b ##35 Greater amberjack MODERN SPECIES 34 slc38a9 (ENSSDUG00000021002) PURG (ENSSDUG00000021051) ENSSDUG00000021062 tpm2 (ENSSDUG00000021112) tln1 (ENSSDUG00000021210) ENSSDUG00000021287 hmgcs1 (ENSSDUG00000021303) YTHDC2 (ENSSDUG00000021389) dcp2 (ENSSDUG00000021505) selenoh (ENSSDUG00000021527) psmb10 (ENSSDUG00000021536) ENSSDUG00000021546 ENSSDUG00000000066 ENSSDUG00000000123 ENSSDUG00000000143 ENSSDUG00000000172 ##35 ENSSDUG00000000313 ENSSDUG00000000404 #35 ENSSDUG00000000502 ENSSDUG00000000667 ENSSDUG00000000689 ENSSDUG00000000849 ENSSDUG00000000860 ENSSDUG00000000958 ccni (ENSSDUG00000000975) ccng2 (ENSSDUG00000000989) ENSSDUG00000001023 WDR7 (ENSSDUG00000001053) st8sia3 (ENSSDUG00000001195) ONECUT2 (ENSSDUG00000001221) fech (ENSSDUG00000001240) Pleuronectoidei ANCESTRAL SPECIES 27 ENSGT00940000166369 ENSGT00940000158679 ENSGT00940000153972.B ENSGT00940000158793 ENSGT00390000016247 ENSGT00940000159193 ENSGT00940000155457.a.a.d ENSGT00390000013593 ENSGT00940000157231.a.a ENSGT00390000017627.b ENSGT00530000063534.b ENSGT00940000155900.i ENSGT00940000156937.a.a ENSGT00950000183064.a.b.a.b ENSGT00940000154313.c.a ENSGT01100000263504.a.b.a.b.a.b ##35 ENSGT00940000164977.a ENSGT00390000002548 ENSGT00940000155573.g.b ENSGT00940000155478.hb.b ENSGT00450000040324.a.a.a ENSGT00940000164418.a.b ENSGT00950000182985.a.b.a ENSGT01030000234613.b.b.h ENSGT00940000159555.v.b ENSGT00950000182772.A.a.a.b.r.a ENSGT00940000161313 ENSGT00940000158344.a.b ENSGT01030000234642.a.b.b.d.b.c.b ENSGT00940000162120.f.a ENSGT00950000183079.A.b.c.b Turbot DUPLICATION Turbot MODERN SPECIES 15 PIK3CB (ENSSMAG00000000112) ENSSMAG00000000129 ENSSMAG00000029620 ENSSMAG00000000161 ENSSMAG00000000166 ENSSMAG00000000194 ENSSMAG00000000173 ENSSMAG00000036287 ENSSMAG00000024997 meis3 (ENSSMAG00000000184) sirt2 (ENSSMAG00000000201) dmac2 (ENSSMAG00000000205) ENSSMAG00000000207 nop53 (ENSSMAG00000000212) ENSSMAG00000021956 #22 ENSSMAG00000000215 ##35 ENSSMAG00000000220 ENSSMAG00000000225 ENSSMAG00000000231 sars2 (ENSSMAG00000000240) si:dkey-260j18.2 (ENSSMAG00000028613) slc5a2 (ENSSMAG00000000249) fbxo46 (ENSSMAG00000027324) coq8b (ENSSMAG00000000271) numbl (ENSSMAG00000000283) ENSSMAG00000000311 dpf1 (ENSSMAG00000000322) ENSSMAG00000000333 ENSSMAG00000026129 ENSSMAG00000000345 ENSSMAG00000000353 Turbot MODERN SPECIES 16 ntm (ENSSMAG00000005516) opcml (ENSSMAG00000005521) ENSSMAG00000005628 pknox2 (ENSSMAG00000005642) tmem218 (ENSSMAG00000005688) ENSSMAG00000027940 robo3 (ENSSMAG00000005714) ENSSMAG00000028973 esama (ENSSMAG00000006002) fez1 (ENSSMAG00000006021) ENSSMAG00000006073 IGSF9B (ENSSMAG00000006092) ENSSMAG00000006198 VPS26B (ENSSMAG00000006221) ENSSMAG00000006246 ENSSMAG00000006379 ##35 Otx5 (ENSSMAG00000006403) ENSSMAG00000006441 nova1 (ENSSMAG00000006485) capns1a (ENSSMAG00000006492) zgc:153990 (ENSSMAG00000006509) dlb (ENSSMAG00000006534) ppp1r14aa (ENSSMAG00000006554) ENSSMAG00000006566 ENSSMAG00000006616 ckma (ENSSMAG00000006685) ENSSMAG00000006696 ENSSMAG00000006702 ENSSMAG00000006742 ENSSMAG00000006800 ENSSMAG00000006823 Eupercaria ANCESTRAL SPECIES 10 ENSGT00940000153801.a ENSGT00940000159641 ENSGT00940000154852.a ENSGT00530000066748 ENSGT00940000159861 ENSGT00940000157969 ENSGT00940000171912 ENSGT00940000160173 ENSGT00940000158109 ENSGT00810000125570 ENSGT00940000160651 ENSGT00530000064671 ENSGT00940000159396 ENSGT00940000156610 ENSGT00390000000306 ENSGT01100000263504.a.b.a.b.a.b ##35 ENSGT00510000049652 ENSGT00940000154307.A ENSGT00390000006068 ENSGT00390000017838 ENSGT00510000048359 ENSGT00390000014665 ENSGT00940000155267 ENSGT00940000160374 ENSGT00550000075088.a.a ENSGT00940000167095.A ENSGT00940000166841 ENSGT00940000154323.a ENSGT00940000160435 ENSGT00390000002866.a ENSGT00650000094874 Eupecaria_A ANCESTRAL SPECIES 17 ENSGT00940000158679 ENSGT00940000153972.B ENSGT00940000158793 ENSGT00390000016247 ENSGT00940000159193 ENSGT01010000228854 ENSGT00940000155457.a.a.d ENSGT00390000013593 ENSGT00940000157231.a.a ENSGT00390000017627.b ENSGT00530000063534.b ENSGT00940000155900.i ENSGT00940000156937.a.a ENSGT00950000183064.a.b.a.b ENSGT00940000154313.c.a ENSGT01100000263504.a.b.a.b.a.b ##35 ENSGT00940000164977.a ENSGT00390000002548 ENSGT00940000155573.g.b ENSGT00940000155478.hb.b ENSGT00450000040324.a.a.a ENSGT00940000164418.a.b ENSGT00950000182985.a.b.a ENSGT01030000234613.b.b.h ENSGT00940000159555.v.b ENSGT00950000182772.A.a.a.b.r.a ENSGT00940000161313 ENSGT00940000158344.a.b ENSGT01030000234642.a.b.b.d.b.c.b ENSGT00940000162120.f.a ENSGT00950000183079.A.b.c.b Ballan wrasse MODERN SPECIES 217 zgc:162193 (ENSLBEG00000011932) ENSLBEG00000011922 dpf1 (ENSLBEG00000011887) ENSLBEG00000011828 numbl (ENSLBEG00000011765) coq8b (ENSLBEG00000011726) fbxo46 (ENSLBEG00000011716) slc5a2 (ENSLBEG00000011668) si:dkey-260j18.2 (ENSLBEG00000011619) sars2 (ENSLBEG00000011593) ENSLBEG00000011550 psma6l (ENSLBEG00000011515) ENSLBEG00000011493 GJD2 (ENSLBEG00000011484) nop53 (ENSLBEG00000011432) ENSLBEG00000011415 ##35 ENSLBEG00000011381 meis3 (ENSLBEG00000011340) ENSLBEG00000011302 lpar5b (ENSLBEG00000011279) lpar5b (ENSLBEG00000011266) ITM2C (ENSLBEG00000011245) ENSLBEG00000011209 her8.2 (ENSLBEG00000011179) HES6 (ENSLBEG00000011136) PER2 (ENSLBEG00000011024) PIK3CB (ENSLBEG00000010941) Eupecaria_B ANCESTRAL SPECIES 17 ENSGT00940000158679 ENSGT00940000153972.B ENSGT00940000158793 ENSGT00390000016247 ENSGT00940000159193 ENSGT01010000228854 ENSGT00940000155457.a.a.d ENSGT00390000013593 ENSGT00940000157231.a.a ENSGT00390000017627.b ENSGT00530000063534.b ENSGT00940000155900.i ENSGT00940000156937.a.a ENSGT00950000183064.a.b.a.b ENSGT00940000154313.c.a ENSGT01100000263504.a.b.a.b.a.b ##35 ENSGT00940000164977.a ENSGT00390000002548 ENSGT00940000155573.g.b ENSGT00940000155478.hb.b ENSGT00450000040324.a.a.a ENSGT00940000164418.a.b ENSGT00950000182985.a.b.a ENSGT01030000234613.b.b.h ENSGT00940000159555.v.b ENSGT00950000182772.A.a.a.b.r.a ENSGT00940000161313 ENSGT00940000158344.a.b ENSGT01030000234642.a.b.b.d.b.c.b ENSGT00940000162120.f.a ENSGT00950000183079.A.b.c.b Eupecaria_C ANCESTRAL SPECIES ENSGT01100000263504.a.b.a.b.a.b ##35 Eupercaria_incertae_sedis ANCESTRAL SPECIES ENSGT01100000263504.a.b.a.b.a.b ##35 European seabass MODERN SPECIES 11 ENSDLAG00005013736 ENSDLAG00005013262 ENSDLAG00005005367 ENSDLAG00005005163 UTS2R (ENSDLAG00005005149) ogfod3 (ENSDLAG00005005113) HEXD (ENSDLAG00005005055) CYBC1 (ENSDLAG00005030018) NARF (ENSDLAG00005004825) ENSDLAG00005004814 ENSDLAG00005004470 mrpl38 (ENSDLAG00005034858) ENSDLAG00005004354 wbp2 (ENSDLAG00005004313) UNC13D (ENSDLAG00005024774) ENSDLAG00005028762 ##35 UNK (ENSDLAG00005024769) ENSDLAG00005031026 ENSDLAG00005028146 zgc:194990 (ENSDLAG00005034992) ITGB4 (ENSDLAG00005023633) sap30bp (ENSDLAG00005023574) ENSDLAG00005023565 ENSDLAG00005027671 ENSDLAG00005023317 ENSDLAG00005022687 tob1b (ENSDLAG00005034568) ENSDLAG00005022653 ENSDLAG00005020393 ENSDLAG00005020316 ENSDLAG00005020263 Perciformes ANCESTRAL SPECIES 25 ENSGT00940000158679 ENSGT00940000153972.B ENSGT00940000158793 ENSGT00390000016247 ENSGT00940000159193 ENSGT01010000228854 ENSGT00940000155457.a.a.d ENSGT00390000013593 ENSGT00940000157231.a.a ENSGT00390000017627.b ENSGT00530000063534.b ENSGT00940000155900.i ENSGT00940000156937.a.a ENSGT00950000183064.a.b.a.b ENSGT00940000154313.c.a ENSGT01100000263504.a.b.a.b.a.b ##35 ENSGT00940000164977.a ENSGT00390000002548 ENSGT00940000155573.g.b ENSGT00940000155478.hb.b ENSGT00450000040324.a.a.a ENSGT00940000164418.a.b ENSGT00950000182985.a.b.a ENSGT01030000234613.b.b.h ENSGT00940000159555.v.b ENSGT00950000182772.A.a.a.b.r.a ENSGT00940000161313 ENSGT00940000158344.a.b ENSGT01030000234642.a.b.b.d.b.c.b ENSGT00940000162120.f.a ENSGT00950000183079.A.b.c.b Cottioidei ANCESTRAL SPECIES 12 ENSGT00940000153801.a ENSGT00940000159641 ENSGT00940000154852.a ENSGT00530000066748 ENSGT00940000159861 ENSGT00940000157969 ENSGT00940000171912 ENSGT00940000160173 ENSGT00940000158109 ENSGT00810000125570 ENSGT00940000160651 ENSGT00530000064671 ENSGT00940000159396 ENSGT00940000156610 ENSGT00390000000306 ENSGT01100000263504.a.b.a.b.a.b ##35 ENSGT00510000049652 ENSGT00940000154307.A ENSGT00390000006068 ENSGT00390000017838 ENSGT00510000048359 ENSGT00390000014665 ENSGT00940000155267 ENSGT00940000160374 ENSGT00550000075088.a.a ENSGT00940000167095.A ENSGT00940000166841 ENSGT00940000154323.a ENSGT00940000160435 ENSGT00390000002866.a ENSGT00650000094874 Lumpfish DUPLICATION Lumpfish MODERN SPECIES 10 decr2 (ENSCLMG00005010768) RDH13 (ENSCLMG00005010767) SBK1 (ENSCLMG00005010765) ENSCLMG00005010763 NLRC3 (ENSCLMG00005010762) ENSCLMG00005010603 ENSCLMG00005010596 ENSCLMG00005010594 rhot2 (ENSCLMG00005009288) h1-0 (ENSCLMG00005009277) rhbdl1 (ENSCLMG00005009275) zgc:112496 (ENSCLMG00005009274) wdr24 (ENSCLMG00005009269) anks3 (ENSCLMG00005009263) zgc:112185 (ENSCLMG00005009261) ENSCLMG00005009258 ##35 ENSCLMG00005009255 ENSCLMG00005009254 ENSCLMG00005009253 ENSCLMG00005009252 gnptg (ENSCLMG00005009251) tsr3 (ENSCLMG00005009250) pdpk1b (ENSCLMG00005007749) kctd5a (ENSCLMG00005007736) ube2ia (ENSCLMG00005007735) ENSCLMG00005007722 ccdc189 (ENSCLMG00005007720) phkg2 (ENSCLMG00005007717) RNF40 (ENSCLMG00005007667) ENSCLMG00005007665 ENSCLMG00005007664 Lumpfish MODERN SPECIES 5 thap12a (ENSCLMG00005001367) ENSCLMG00005001419 stt3a (ENSCLMG00005001433) ei24 (ENSCLMG00005001486) ENSCLMG00005001649 B3GAT1 (ENSCLMG00005001680) ENSCLMG00005001811 ENSCLMG00005001883 dscama (ENSCLMG00005001893) tmprss2 (ENSCLMG00005001908) acat1 (ENSCLMG00005001921) IGSF9B (ENSCLMG00005001992) jam3b (ENSCLMG00005001995) VPS26B (ENSCLMG00005002038) ARHGAP32 (ENSCLMG00005002088) ENSCLMG00005003854 ##35 crx (ENSCLMG00005003857) kptn (ENSCLMG00005003862) nova1 (ENSCLMG00005003905) capns1b (ENSCLMG00005003909) zgc:153990 (ENSCLMG00005003910) dlb (ENSCLMG00005003913) ppp1r14aa (ENSCLMG00005003935) ENSCLMG00005003937 MX1 (ENSCLMG00005003939) MARK4 (ENSCLMG00005003941) ckma (ENSCLMG00005003944) nccrp1 (ENSCLMG00005003964) slc8a2a (ENSCLMG00005003969) hnrnpl (ENSCLMG00005004128) irf2bp1 (ENSCLMG00005004511) Perciformes_a ANCESTRAL SPECIES 284 ENSGT01100000263504.a.b.a.b.a.b ##35 ENSGT00940000171204 Pike perch MODERN SPECIES 88 fancl (ENSSLUG00000022293) ENSSLUG00000022287 RIMS1 (ENSSLUG00000022176) asrgl1 (ENSSLUG00000022147) OGFRL1 (ENSSLUG00000022144) b3gat2 (ENSSLUG00000022141) ENSSLUG00000022138 ENSSLUG00000022135 FDXR (ENSSLUG00000022128) ENSSLUG00000022123 mrpl38 (ENSSLUG00000022114) ENSSLUG00000022108 wbp2 (ENSSLUG00000022103) UNC13D (ENSSLUG00000022071) unk (ENSSLUG00000022052) ENSSLUG00000022047 ##35 ENSSLUG00000022038 zgc:194990 (ENSSLUG00000022033) itgb4 (ENSSLUG00000021615) sap30bp (ENSSLUG00000021555) ENSSLUG00000021551 ENSSLUG00000021547 CDR2L (ENSSLUG00000021545) mrpl58 (ENSSLUG00000021541) DAGLB (ENSSLUG00000021469) SPAG9 (ENSSLUG00000021342) tob1b (ENSSLUG00000021318) ENSSLUG00000021316 ENSSLUG00000007852 ENSSLUG00000007012 bsk146 (ENSSLUG00000006920) Channel bull blenny MODERN SPECIES 59 ENSCGOG00000011437 ENSCGOG00000011434 ENSCGOG00000011432 KCNA1 (ENSCGOG00000011431) ENSCGOG00000011415 ENSCGOG00000011398 ENSCGOG00000011379 ENSCGOG00000011363 ENSCGOG00000011360 ENSCGOG00000009249 ENSCGOG00000009217 ##35 ENSCGOG00000009206 ENSCGOG00000009165 ENSCGOG00000009152 ENSCGOG00000009138 Tetraodontidae ANCESTRAL SPECIES ENSGT00940000163461.a.a.a.b.d ENSGT00940000156268.a.b ENSGT01090000260051.b.a.b ENSGT00940000157017.a.b.a ENSGT00390000005895 ENSGT00390000014852.a ENSGT00390000004691 ENSGT00940000153514.a.b ENSGT00390000013574 ENSGT00900000141125 ENSGT00940000162951 ENSGT00530000063718.a.a ENSGT00730000110939.b ENSGT00940000159360 ENSGT01100000263504.a.a ##35 ENSGT01100000263504.a.b.a.b.a.b ##35 ENSGT00940000164977.b ENSGT00940000171204 ENSGT00940000163587.a.b.a.c.b ENSGT01100000263555.b ENSGT00390000007870 ENSGT00390000018570.b.a ENSGT00390000013268 ENSGT00940000156486 ENSGT00940000153496.a.b.a ENSGT00940000154208.c.b ENSGT00940000160624 ENSGT00940000158031.c ENSGT00940000163867 ENSGT00940000164726.b ENSGT00940000164900 Tetraodon MODERN SPECIES 8 ENSTNIG00000014318 lpar5b (ENSTNIG00000014319) RBP2 (ENSTNIG00000014320) foxl2b (ENSTNIG00000014321) PIK3CB (ENSTNIG00000014322) PER2 (ENSTNIG00000014323) her13 (ENSTNIG00000014324) her8.2 (ENSTNIG00000000385) ENSTNIG00000014325 ITM2C (ENSTNIG00000014326) ENSTNIG00000014327 ENSTNIG00000014328 GJD2 (ENSTNIG00000014329) ENSTNIG00000001535 nop53 (ENSTNIG00000014330) ENSTNIG00000014331 ##35 ENSTNIG00000014332 psma6l (ENSTNIG00000014333) ENSTNIG00000014334 sars2 (ENSTNIG00000014335) si:dkey-260j18.2 (ENSTNIG00000014336) fbxo46 (ENSTNIG00000001190) coq8b (ENSTNIG00000014337) numbl (ENSTNIG00000014338) ENSTNIG00000014339 ENSTNIG00000014340 dpf1 (ENSTNIG00000014341) ENSTNIG00000014342 pnkp (ENSTNIG00000014343) ENSTNIG00000014344 ENSTNIG00000014345 Fugu DUPLICATION Fugu MODERN SPECIES ENSTRUG00000027661 ENSTRUG00000033162 ENSTRUG00000002567 ENSTRUG00000031537 UTS2R (ENSTRUG00000008902) ogfod3 (ENSTRUG00000008823) hexdc (ENSTRUG00000008699) cybc1 (ENSTRUG00000026156) narf (ENSTRUG00000008423) FDXR (ENSTRUG00000008164) mrpl38 (ENSTRUG00000008024) ENSTRUG00000029396 wbp2 (ENSTRUG00000007743) UNC13D (ENSTRUG00000007542) unk (ENSTRUG00000007192) ENSTRUG00000019921 ##35 ENSTRUG00000024659 zgc:194990 (ENSTRUG00000025865) itgb4 (ENSTRUG00000005807) sap30bp (ENSTRUG00000005672) CDR2L (ENSTRUG00000025573) MRPL58 (ENSTRUG00000027333) DAGLB (ENSTRUG00000005319) SPAG9 (ENSTRUG00000003579) tob1b (ENSTRUG00000003534) ENSTRUG00000003421 ENSTRUG00000002402 ENSTRUG00000031061 sult2st2 (ENSTRUG00000017213) ENSTRUG00000023473 bsk146 (ENSTRUG00000017210) Fugu MODERN SPECIES 2 mrps22 (ENSTRUG00000007940) PIK3CB (ENSTRUG00000007179) PER2 (ENSTRUG00000006817) her13 (ENSTRUG00000006688) her8.2 (ENSTRUG00000006663) ENSTRUG00000006438 ITM2C (ENSTRUG00000006075) ENSTRUG00000005924 ENSTRUG00000032831 meis3 (ENSTRUG00000000345) ENSTRUG00000024559 sirt2 (ENSTRUG00000005408) dmac2 (ENSTRUG00000025807) GJD2 (ENSTRUG00000005315) nop53 (ENSTRUG00000004944) ENSTRUG00000028860 ##35 otx5 (ENSTRUG00000033392) psma6l (ENSTRUG00000020871) sars2 (ENSTRUG00000004509) si:dkey-260j18.2 (ENSTRUG00000031099) slc5a2 (ENSTRUG00000003590) fbxo46 (ENSTRUG00000029970) coq8b (ENSTRUG00000001653) numbl (ENSTRUG00000002686) ENSTRUG00000002163 dpf1 (ENSTRUG00000027070) ENSTRUG00000022008 pnkp (ENSTRUG00000001753) ENSTRUG00000002525 ENSTRUG00000031154 ENSTRUG00000026329 Protacanthopterygii ANCESTRAL SPECIES 54 ENSGT00940000153801.a ENSGT00940000159641 ENSGT00940000154852.a ENSGT00530000066748 ENSGT00940000159861 ENSGT00390000008957 ENSGT00940000166280 ENSGT00940000160173 ENSGT00940000158109 ENSGT00810000125570 ENSGT00940000160651 ENSGT00530000064671 ENSGT00940000159396 ENSGT00940000156610 ENSGT00390000000306 ENSGT01100000263504.a.b.a.b.a.b ##35 ENSGT00510000049652 ENSGT00940000154307.A ENSGT00390000006068 ENSGT00390000017838 ENSGT00510000048359 ENSGT00390000014665 ENSGT00940000155267 ENSGT00940000160374 ENSGT00550000075088.a.a.e ENSGT00940000167095.A ENSGT00940000166841 ENSGT00940000154323.a ENSGT00940000160435 ENSGT00390000002866.a ENSGT00650000094874 Salmoninae ANCESTRAL SPECIES 23 ENSGT00940000159641 ENSGT00940000154852.a.f ENSGT00530000066748.c ENSGT00940000159861 ENSGT00390000008957 ENSGT00940000166280 ENSGT00940000160173 ENSGT00940000165798.c.b.b ENSGT00940000158109.a ENSGT00810000125570.d ENSGT00940000160651.a ENSGT00530000064671.c ENSGT00940000159396.e ENSGT00940000156610 ENSGT00390000000306 ENSGT01100000263504.a.b.a.b.a.b ##35 ENSGT00510000049652 ENSGT00940000154307.A ENSGT00390000006068 ENSGT00390000017838 ENSGT00510000048359 ENSGT00390000014665 ENSGT00940000155267.y.a ENSGT00940000160374.r ENSGT00940000160374.q.a.b.a ENSGT00550000075088.a.a.e.a ENSGT00940000167095.A ENSGT00940000166841 ENSGT00940000154323.a ENSGT00940000160435 ENSGT00390000002866.a.g Huchen DUPLICATION Huchen MODERN SPECIES 268 tmem204 (ENSHHUG00000007051) ENSHHUG00000007048 ENSHHUG00000007042 ENSHHUG00000007039 telo2 (ENSHHUG00000006773) rab11fip3 (ENSHHUG00000006761) decr2 (ENSHHUG00000006753) SBK1 (ENSHHUG00000006747) ENSHHUG00000006730 rhot2 (ENSHHUG00000006692) h1-0 (ENSHHUG00000006670) rhbdl1 (ENSHHUG00000006660) wdr24 (ENSHHUG00000006650) ENSHHUG00000006609 ##35 ENSHHUG00000006599 pdpk1b (ENSHHUG00000006500) ENSHHUG00000006485 ENSHHUG00000006397 RNF40 (ENSHHUG00000006190) ENSHHUG00000006170 ENSHHUG00000006142 ENSHHUG00000006102 ENSHHUG00000006095 ENSHHUG00000006090 TMEM60 (ENSHHUG00000006085) PRR5 (ENSHHUG00000006071) ENSHHUG00000006038 ERC1 (ENSHHUG00000005481) FBXL14 (ENSHHUG00000005464) Huchen MODERN SPECIES 3840 mrpl38 (ENSHHUG00000040176) wbp2 (ENSHHUG00000040188) ENSHHUG00000040203 unk (ENSHHUG00000040276) ENSHHUG00000040302 ##35 zgc:194990 (ENSHHUG00000040313) ENSHHUG00000040317 ENSHHUG00000040320 ENSHHUG00000040323 Salmoninae_a ANCESTRAL SPECIES 17 ENSGT00940000159641 ENSGT00940000154852.a.f ENSGT00530000066748.c ENSGT00940000159861 ENSGT00390000008957 ENSGT00940000166280 ENSGT00940000160173 ENSGT00940000165798.c.b.b ENSGT00940000158109.a ENSGT00810000125570.d ENSGT00940000160651.a ENSGT00530000064671.c ENSGT00940000159396.e ENSGT00940000156610 ENSGT00390000000306 ENSGT01100000263504.a.b.a.b.a.b ##35 ENSGT00510000049652 ENSGT00940000154307.A ENSGT00390000006068 ENSGT00390000017838 ENSGT00510000048359 ENSGT00390000014665 ENSGT00940000155267.y.a ENSGT00940000160374.r ENSGT00550000075088.a.a.e.a ENSGT00940000167095.A ENSGT00940000166841 ENSGT00940000154323.a ENSGT00940000160435 ENSGT00390000002866.a.g ENSGT00650000094874 Salmo ANCESTRAL SPECIES 3 ENSGT00940000159641 ENSGT00940000154852.a.f ENSGT00530000066748.c ENSGT00940000159861 ENSGT00390000008957 ENSGT00940000166280 ENSGT00940000160173 ENSGT00940000165798.c.b.b ENSGT00940000158109.a ENSGT00810000125570.d ENSGT00940000160651.a ENSGT00530000064671.c ENSGT00940000159396.e ENSGT00940000156610 ENSGT00390000000306 ENSGT01100000263504.a.b.a.b.a.b ##35 ENSGT00510000049652 ENSGT00940000154307.A ENSGT00390000006068 ENSGT00390000017838 ENSGT00510000048359 ENSGT00390000014665 ENSGT00940000155267.y.a ENSGT00940000160374.r ENSGT00550000075088.a.a.e.a ENSGT00940000167095.A ENSGT00940000166841 ENSGT00940000154323.a ENSGT00940000160435 ENSGT00390000002866.a.g ENSGT00650000094874 River trout DUPLICATION River trout MODERN SPECIES 10 ywhae2 (ENSSTUG00000042940) gria4b (ENSSTUG00000043268) elmod1 (ENSSTUG00000044172) CUL5 (ENSSTUG00000044214) CAPN5 (ENSSTUG00000044359) ompb (ENSSTUG00000044427) MYO7A (ENSSTUG00000044508) ENSSTUG00000046332 ENSSTUG00000046345 ENSSTUG00000046355 ENSSTUG00000046383 ENSSTUG00000046392 FCHSD2 (ENSSTUG00000046420) fam168a (ENSSTUG00000046495) plekhb1 (ENSSTUG00000046511) ENSSTUG00000046520 ##35 crx (ENSSTUG00000046524) kptn (ENSSTUG00000046541) nova1 (ENSSTUG00000046672) ENSSTUG00000046696 CAPNS1 (ENSSTUG00000046718) zgc:153990 (ENSSTUG00000046722) ENSSTUG00000046727 ENSSTUG00000046731 dlb (ENSSTUG00000046740) ppp1r14aa (ENSSTUG00000046753) EXOC3L2 (ENSSTUG00000046759) MARK4 (ENSSTUG00000046778) ckma (ENSSTUG00000046897) ckma (ENSSTUG00000046932) nccrp1 (ENSSTUG00000002140) River trout MODERN SPECIES 11 SBK1 (ENSSTUG00000017737) ENSSTUG00000017734 ENSSTUG00000017722 NLRC3 (ENSSTUG00000017655) cluap1 (ENSSTUG00000017469) ENSSTUG00000017438 WDR90 (ENSSTUG00000016087) ENSSTUG00000016027 rhot2 (ENSSTUG00000015861) h1-0 (ENSSTUG00000015855) rhbdl1 (ENSSTUG00000015839) zgc:112496 (ENSSTUG00000015834) wdr24 (ENSSTUG00000015807) anks3 (ENSSTUG00000015776) zgc:112185 (ENSSTUG00000015761) ENSSTUG00000015749 ##35 ENSSTUG00000015739 ENSSTUG00000015729 ENSSTUG00000015722 ENSSTUG00000015711 gnptg (ENSSTUG00000015462) tsr3 (ENSSTUG00000015423) pdpk1b (ENSSTUG00000014241) ENSSTUG00000014189 ENSSTUG00000014167 ENSSTUG00000014156 ENSSTUG00000014118 ccdc189 (ENSSTUG00000014100) phkg2 (ENSSTUG00000013973) RNF40 (ENSSTUG00000013764) ENSSTUG00000013714 Atlantic salmon MODERN SPECIES 12 nop53 (ENSSSAG00000052779) h3f3a (ENSSSAG00000089325) #22 h3f3a (ENSSSAG00000052774) ##35 ENSSSAG00000052766 ENSSSAG00000052764 ENSSSAG00000052749 ENSSSAG00000103032 sars2 (ENSSSAG00000120889) si:dkey-260j18.2 (ENSSSAG00000084907) slc5a2 (ENSSSAG00000052423) fbxo46 (ENSSSAG00000115363) coq8b (ENSSSAG00000048832) numbl (ENSSSAG00000119287) ENSSSAG00000041640 dpf1 (ENSSSAG00000088639) ENSSSAG00000019907 ##35 ENSSSAG00000042480 ENSSSAG00000109714 ENSSSAG00000048642 ENSSSAG00000048625 ENSSSAG00000048615 ENSSSAG00000111742 ENSSSAG00000048573 TAGL (ENSSSAG00000048547) pcsk7 (ENSSSAG00000033074) BACE1 (ENSSSAG00000048383) ENSSSAG00000047189 ENSSSAG00000115227 ENSSSAG00000047156 ENSSSAG00000110106 ENSSSAG00000046950 Oncorhynchus ANCESTRAL SPECIES 26 ENSGT00950000183187.B ENSGT00940000162710.c.b ENSGT00940000159664.f.b ENSGT00940000156819.a.b.k ENSGT00940000157017.a.b.a ENSGT00390000005895.h ENSGT00390000004691.h ENSGT00940000153514.a.b.q.a ENSGT00940000165867.A ENSGT00900000141125.i ENSGT01080000259546 ENSGT00530000063718.a.a.r ENSGT00730000110939.b.j ENSGT00940000159360.b ENSGT01100000263504.a.b.a.b.a.a ##35 ENSGT01100000263504.a.b.a.b.a.b ##35 ENSGT01030000235280 ENSGT00940000163587.a.b.a.c.b.f ENSGT01100000263555.b.g.b ENSGT00390000007870.n ENSGT01000000216149.a.a.a ENSGT01000000216149.a.b ENSGT00390000018570.b.a.a ENSGT00940000157510.a ENSGT00940000155709.i.d ENSGT00940000162720.b.a.a.a.a ENSGT00940000156854.s.z.a ENSGT00950000182979.a.b.b.b.a.c.d ENSGT00940000154744.a.b.i ENSGT00940000156268.a.b.r ENSGT00940000166074.B Oncorhynchus_a ANCESTRAL SPECIES 25 ENSGT00390000007686.a.a ENSGT00940000160308.a ENSGT00390000009409.nb ENSGT00940000155548.sb.a.a.a ENSGT00390000018436.b ENSGT00940000158344.a.a.d ENSGT00910000144115.b.dc.b.b ENSGT01030000234642.a.b.b.d.b.c.a.c ENSGT00940000159610.m ENSGT00940000160281.p ENSGT00940000161057.g ENSGT00940000154866.A.e ENSGT00940000157514.a ENSGT01090000260005.a.b.a.b.b.i.d ENSGT00390000017267.d ENSGT01100000263504.a.b.a.b.a.b ##35 ENSGT00940000161634 ENSGT00550000074807.c.e.b ENSGT00390000001278.a.c ENSGT00940000156265.g ENSGT00940000160533.a ENSGT00530000064222.a.b ENSGT00940000158965.p ENSGT00940000160957.h ENSGT00940000165302.c ENSGT00940000160692.e.a.b.a.a ENSGT01030000234592.A.b.a.db.a.b ENSGT00390000017365.a.a.b.b ENSGT01000000219184 ENSGT00940000165141.a ENSGT00940000154525.b.b.a Coho salmon DUPLICATION Coho salmon MODERN SPECIES 12 SBK1 (ENSOKIG00005025575) ENSOKIG00005025568 ENSOKIG00005025542 NLRC3 (ENSOKIG00005025523) cluap1 (ENSOKIG00005025451) ENSOKIG00005025411 WDR90 (ENSOKIG00005024676) ENSOKIG00005024608 rhot2 (ENSOKIG00005024511) h1-0 (ENSOKIG00005024496) rhbdl1 (ENSOKIG00005024483) zgc:112496 (ENSOKIG00005024474) wdr24 (ENSOKIG00005024459) anks3 (ENSOKIG00005024434) zgc:112185 (ENSOKIG00005024417) ENSOKIG00005024408 ##35 ENSOKIG00005024398 ENSOKIG00005024356 ENSOKIG00005024350 ENSOKIG00005024343 gnptg (ENSOKIG00005023902) tsr3 (ENSOKIG00005023859) pdpk1b (ENSOKIG00005022926) ENSOKIG00005022745 ENSOKIG00005022558 ENSOKIG00005022524 ENSOKIG00005022315 ccdc189 (ENSOKIG00005022260) phkg2 (ENSOKIG00005021806) RNF40 (ENSOKIG00005021406) ENSOKIG00005021346 Coho salmon DUPLICATION Coho salmon MODERN SPECIES 9 ENSOKIG00005017217 eif3k (ENSOKIG00005017257) zgc:85932 (ENSOKIG00005017441) actn4 (ENSOKIG00005017796) slc8a2b (ENSOKIG00005023840) ENSOKIG00005023886 ENSOKIG00005024023 ech1 (ENSOKIG00005024615) ENSOKIG00005024631 meis3 (ENSOKIG00005024671) ENSOKIG00005024777 dmac2 (ENSOKIG00005024789) GJD2 (ENSOKIG00005024800) nop53 (ENSOKIG00005024810) ENSOKIG00005024849 ##35 ENSOKIG00005024882 ##35 ENSOKIG00005024896 ENSOKIG00005024906 ENSOKIG00005024920 sars2 (ENSOKIG00005024954) si:dkey-260j18.2 (ENSOKIG00005025283) slc5a2 (ENSOKIG00005025366) fbxo46 (ENSOKIG00005025446) coq8b (ENSOKIG00005025560) numbl (ENSOKIG00005026584) ENSOKIG00005026617 dpf1 (ENSOKIG00005026648) ENSOKIG00005026759 ENSOKIG00005026765 pnkp (ENSOKIG00005026820) MFRP (ENSOKIG00005027120) Coho salmon MODERN SPECIES 6 ENSOKIG00005037148 ENSOKIG00005036011 ENSOKIG00005035881 ENSOKIG00005035554 ENSOKIG00005035517 hnrnpl2 (ENSOKIG00005034949) ech1 (ENSOKIG00005034408) ENSOKIG00005034362 meis3 (ENSOKIG00005034269) ENSOKIG00005034253 sirt2 (ENSOKIG00005034106) ENSOKIG00005034080 GJD2 (ENSOKIG00005034068) nop53 (ENSOKIG00005034052) ENSOKIG00005034030 ENSOKIG00005045489 ##35 ENSOKIG00005045484 psma6l (ENSOKIG00005045479) ENSOKIG00005045438 si:dkey-260j18.2 (ENSOKIG00005045411) slc5a2 (ENSOKIG00005044952) fbxo46 (ENSOKIG00005044901) coq8b (ENSOKIG00005043576) numbl (ENSOKIG00005043420) ENSOKIG00005043300 dpf1 (ENSOKIG00005042644) ENSOKIG00005042593 ENSOKIG00005042570 ENSOKIG00005042187 MFRP (ENSOKIG00005042118) ENSOKIG00005042099 Chinook salmon DUPLICATION Chinook salmon MODERN SPECIES 464 ENSOTSG00005041845 mrpl38 (ENSOTSG00005041847) wbp2 (ENSOTSG00005041849) ENSOTSG00005041867 unk (ENSOTSG00005041872) ENSOTSG00005042088 ##35 ENSOTSG00005042089 itgb4 (ENSOTSG00005042090) ENSOTSG00005037277 RAB3IL1 (ENSOTSG00005037298) ENSOTSG00005037299 HPS5 (ENSOTSG00005037301) gtf2h1 (ENSOTSG00005037309) ENSOTSG00005037422 Chinook salmon MODERN SPECIES 4 DMWD (ENSOTSG00005005984) ENSOTSG00005005980 eif3k (ENSOTSG00005005966) actn4 (ENSOTSG00005005711) ENSOTSG00005005707 slc8a2b (ENSOTSG00005005664) srsf7a (ENSOTSG00005005660) hnrnpl2 (ENSOTSG00005005181) ech1 (ENSOTSG00005002431) ENSOTSG00005002392 meis3 (ENSOTSG00005002385) ENSOTSG00005002375 sirt2 (ENSOTSG00005002294) GJD2 (ENSOTSG00005002187) nop53 (ENSOTSG00005001988) ENSOTSG00005001679 ##35 otx5 (ENSOTSG00005046969) psma6l (ENSOTSG00005046968) ENSOTSG00005046967 si:dkey-260j18.2 (ENSOTSG00005046966) slc5a2 (ENSOTSG00005046959) fbxo46 (ENSOTSG00005046950) coq8b (ENSOTSG00005046836) ENSOTSG00005046830 numbl (ENSOTSG00005046829) ENSOTSG00005046828 ENSOTSG00005046827 DDX39A (ENSOTSG00005046826) EVI5L (ENSOTSG00005046825) ENSOTSG00005046824 ENSOTSG00005046823 Otomorpha ANCESTRAL SPECIES 132 ENSGT00940000154852.a ENSGT00530000066748 ENSGT00940000159861 ENSGT00390000008957 ENSGT00940000160173 ENSGT00940000158109 ENSGT00810000125570 ENSGT00940000160651 ENSGT00530000064671 ENSGT00940000159396 ENSGT00940000156610 ENSGT00390000000306 ENSGT01100000263504.a.b.a.a #22 ENSGT01100000263504.a.b.a.b.a.a ##35 ENSGT01100000263504.a.b.a.b.a.b ##35 ENSGT00510000049652 ENSGT00940000154307.A ENSGT00390000017838 ENSGT00940000159641 ENSGT00940000153801.a ENSGT00440000033742.a.a ENSGT00390000006698 ENSGT00940000153417.A ENSGT00390000015528 ENSGT00940000160069 ENSGT00390000013678 ENSGT00390000001390.b ENSGT00530000063870.b ENSGT01100000263515.a.b.a.b.a.h ENSGT00930000151045.f Clupeiformes ANCESTRAL SPECIES 600 ENSGT00940000159120.e ENSGT01090000260005.a.b.a.b.b.j ENSGT01100000263504.a.b.a.b.a.b ##35 ENSGT00940000164977.a ENSGT00390000002548 Atlantic herring MODERN SPECIES 19 ENSCHAG00000013428 GCNT3 (ENSCHAG00000013448) GCNT3 (ENSCHAG00000013464) bnip2 (ENSCHAG00000013481) ENSCHAG00000013651 ENSCHAG00000013663 ENSCHAG00000013677 wdr55 (ENSCHAG00000013876) RPL27A (ENSCHAG00000013888) DENND2B (ENSCHAG00000013960) ENSCHAG00000014374 ANO3 (ENSCHAG00000014448) poglut3 (ENSCHAG00000015281) nfkbib (ENSCHAG00000015466) gjd1a (ENSCHAG00000015476) ENSCHAG00000015489 ##35 crx (ENSCHAG00000015501) kptn (ENSCHAG00000015517) ENSCHAG00000015640 ENSCHAG00000015738 lipia (ENSCHAG00000015758) kif20a (ENSCHAG00000015773) cdc23 (ENSCHAG00000015911) ENSCHAG00000016054 ENSCHAG00000016265 ENSCHAG00000016512 ENSCHAG00000016563 gtf2h1 (ENSCHAG00000016605) hps5 (ENSCHAG00000016916) ENSCHAG00000017201 RAB3IL1 (ENSCHAG00000017264) Otophysi ANCESTRAL SPECIES 112 ENSGT00940000154852.a ENSGT00530000066748 ENSGT00940000159861 ENSGT00390000008957 ENSGT00940000160173 ENSGT00940000158109 ENSGT00810000125570 ENSGT00940000160651 ENSGT00530000064671 ENSGT00940000159396 ENSGT00940000156610 ENSGT00390000000306 ENSGT01100000263504.a.b.a.a #22 ENSGT01100000263504.a.b.a.b.a.a ##35 ENSGT01100000263504.a.b.a.b.a.b ##35 ENSGT00510000049652 ENSGT00940000154307.A ENSGT00390000017838 ENSGT00940000159641 ENSGT00940000153801.a ENSGT00440000033742.a.a ENSGT00390000006698 ENSGT00390000015528 ENSGT00940000153417.A ENSGT00390000013678 ENSGT00390000001390.b ENSGT00530000063870.b ENSGT01100000263515.a.b.a.b.a.h ENSGT00930000151045.f ENSGT00950000183213.a.a.b Characiphysae ANCESTRAL SPECIES ENSGT01100000263504.a.b.a.b.a.b ##35 Characiphysae_b ANCESTRAL SPECIES ENSGT01100000263504.a.b.a.b.a.b ##35 Characoidei ANCESTRAL SPECIES 62 ENSGT00940000163288.a.b.b.b.b ENSGT00940000157809.i ENSGT00390000015916 ENSGT00390000009825 ENSGT00940000156278.re.a ENSGT00390000015579.a.a.b ENSGT00390000009925.a.k.a ENSGT00390000008825.a.a ENSGT00940000157696 ENSGT00550000075071 ENSGT00390000002628 ENSGT00950000182979.a.b.b.b.b.i.a ENSGT00940000163663.B.a ENSGT00940000160824 ENSGT00940000158822 ENSGT01100000263504.a.b.a.b.a.b ##35 ENSGT00940000154307.B ENSGT01060000248742 ENSGT00730000110939.a ENSGT00550000075088.a.a ENSGT00510000049239.b.b ENSGT00940000167095.B ENSGT00940000156355.n.a ENSGT00940000160498.c ENSGT00940000161466 ENSGT00940000158074 ENSGT00390000009084 ENSGT00530000069547.a ENSGT00390000012918.d ENSGT00390000012857 ENSGT00390000001653 Mexicana tetra MODERN SPECIES 71 FKBP10 (ENSAMXG00000017801) p3h4 (ENSAMXG00000017791) ENSAMXG00000017769 ENSAMXG00000036376 ENSAMXG00000036633 mgrn1b (ENSAMXG00000017741) ubald1b (ENSAMXG00000043303) cdip1 (ENSAMXG00000037142) polr3k (ENSAMXG00000039818) snrnp25 (ENSAMXG00000040057) MRTFB (ENSAMXG00000017729) ENSAMXG00000043686 shisa9b (ENSAMXG00000029150) IGFALS (ENSAMXG00000025897) UNKL (ENSAMXG00000007890) ENSAMXG00000035290 ##35 gper1 (ENSAMXG00000025934) BAIAP3 (ENSAMXG00000039125) ube2ia (ENSAMXG00000041809) ENSAMXG00000003010 il21r.2 (ENSAMXG00000032463) pdpk1a (ENSAMXG00000002744) kctd5a (ENSAMXG00000038345) USP31 (ENSAMXG00000002715) Cyprinoidei ANCESTRAL SPECIES 46 ENSGT00950000182979.a.b.b.b.b.i.a ENSGT00940000163663.B.a ENSGT00940000160824 ENSGT00940000176030 ENSGT00940000158822 ENSGT01100000263504.a.b.a.a #22 ENSGT01100000263504.a.b.a.b.a.a ##35 ENSGT00390000001474 ENSGT00390000008920.c.b ENSGT00940000159702 ENSGT00550000074807.c ENSGT00940000161634 ENSGT00940000160308 ENSGT00390000007686.a ENSGT00390000000417.a.a.b.b ##11 ENSGT01100000263504.a.b.a.b.a.b ##35 ENSGT00940000154307.B Zebrafish MODERN SPECIES 6 SAMD4B (ENSDARG00000086735) psma6l (ENSDARG00000043899) otx5 (ENSDARG00000043483) DMWD (ENSDARG00000006585) ENSDARG00000075664 ##11 h3f3b.1 (ENSDARG00000068434) ##35 si:ch1073-429i10.3 (ENSDARG00000068436) ##35 eif3k (ENSDARG00000068289) ENSDARG00000116346 KBTBD3 (ENSDARG00000060512) ENSDARG00000089563 tomt (ENSDARG00000115463) stard10 (ENSDARG00000097718) paf1 (ENSDARG00000098432) socs9 (ENSDARG00000101985) ENSDARG00000101186 SIDT2 (ENSDARG00000045976) SIK3 (ENSDARG00000088083) inppl1a (ENSDARG00000104222) phox2a (ENSDARG00000007406) ENSDARG00000090232 Cyprininae ANCESTRAL SPECIES 999 ENSGT00390000000306.b ENSGT01100000263504.a.b.a.b.a.b ##35 ENSGT00510000049652.b ENSGT00940000154307.A ENSGT00390000017838 Cyprininae_a DUPLICATION Cyprininae_a DUPLICATION Cyprininae_a ANCESTRAL SPECIES 1197 ENSGT00390000000306.b ENSGT01100000263504.a.b.a.b.a.b.`b.a ##35 Golden-line barbel MODERN SPECIES 574 tsr3 (ENSSGRG00000024734) SBK1 (ENSSGRG00000024722) ENSSGRG00000024721 NLRC3 (ENSSGRG00000024719) ENSSGRG00000024716 rhot2 (ENSSGRG00000023356) h1-0 (ENSSGRG00000023337) rhbdl1 (ENSSGRG00000023336) wdr24 (ENSSGRG00000023334) ENSSGRG00000023331 zgc:112185 (ENSSGRG00000023330) ENSSGRG00000023329 ##35 decr2 (ENSSGRG00000023328) rab11fip3 (ENSSGRG00000023327) tmem204 (ENSSGRG00000023325) IFT140 (ENSSGRG00000023293) ENSSGRG00000023291 metrn (ENSSGRG00000023290) ENSSGRG00000023289 ENSSGRG00000023287 crp2 (ENSSGRG00000023286) ENSSGRG00000023285 ENSSGRG00000023278 LRRC4B (ENSSGRG00000023277) zgc:91999 (ENSSGRG00000023273) ENSSGRG00000023270 ENSSGRG00000023267 Common carp reference MODERN SPECIES 40 ENSCCRG00000008015 ENSCCRG00000062020 pdpk1b (ENSCCRG00000007123) tsr3 (ENSCCRG00000007114) gnptg (ENSCCRG00000007081) ENSCCRG00000079635 ENSCCRG00000073766 cluap1 (ENSCCRG00000058859) WDR90 (ENSCCRG00000038797) rhot2 (ENSCCRG00000036930) h1-0 (ENSCCRG00000057432) rhbdl1 (ENSCCRG00000077333) zgc:112496 (ENSCCRG00000003860) wdr24 (ENSCCRG00000003864) anks3 (ENSCCRG00000073395) ENSCCRG00000059888 ##35 ENSCCRG00000003903 ENSCCRG00000003922 ENSCCRG00000057882 tmem204 (ENSCCRG00000067137) ENSCCRG00000071644 metrn (ENSCCRG00000032793) ENSCCRG00000032785 ENSCCRG00000059828 ENSCCRG00000052314 ENSCCRG00000032779 ENSCCRG00000036703 ENSCCRG00000069944 ENSCCRG00000075547 ENSCCRG00000073559 ENSCCRG00000036695 Cyprininae_a ANCESTRAL SPECIES 21 ENSGT00510000047770.c.a.b ENSGT00940000159788.a.a.b ENSGT00940000175510 ENSGT00940000160550.f ENSGT00940000159869.k ENSGT00940000159005.c.a.b.a ENSGT00940000159005.c.a.a.f.a.h.a ENSGT00940000157696.k ENSGT00550000075071.u ENSGT00390000002628.r ENSGT01100000263632 ENSGT00950000182979.a.b.b.b.b.i.a.b ENSGT00940000163663.B.a.a ENSGT00940000160824.b.b ENSGT00940000158822.d ENSGT01100000263504.a.b.a.b.a.b.`b.b ##35 ENSGT00940000154307.B.f ENSGT01060000248742.e ENSGT00730000110939.a.c.a ENSGT00550000075088.a.a.c ENSGT00510000049239.b.b.b ENSGT00940000155267.t.a ENSGT00940000160374.d.b.b ENSGT00940000156355.n.a.b ENSGT00940000160498.c.h ENSGT00940000161466.f ENSGT00390000009084.b ENSGT00530000069547.e ENSGT00390000012918.d.a.a ENSGT00390000012857.s ENSGT00940000155366.a.b Golden-line barbel MODERN SPECIES 394 IGFALS (ENSSGRG00000040541) ENSSGRG00000040542 ENSSGRG00000040551 ENSSGRG00000040603 ##35 gpr146 (ENSSGRG00000040604) il21r.1 (ENSSGRG00000040606) ENSSGRG00000040607 BAIAP3 (ENSSGRG00000040610) ube2ia (ENSSGRG00000040628) pdpk1a (ENSSGRG00000040712) USP31 (ENSSGRG00000040724) hs3st2 (ENSSGRG00000040725) hs3st4 (ENSSGRG00000040726) Cyprininae_a ANCESTRAL SPECIES 506 ENSGT00940000161634 ENSGT00940000160308.u ENSGT00390000007686.a.e ENSGT00390000000417.a.a.b.b ##11 ENSGT01100000263504.a.b.a.b.a.b.ab ##35 ENSGT01100000263504.a.b.a.a #22 ENSGT00390000009409 ENSGT00940000156432.b ENSGT00940000161220.g.a ENSGT00940000156576.e ENSGT00940000161147.b.a ENSGT00390000012961.j ENSGT00510000047611.rb.a ENSGT00940000157424.hc.a Common carp reference MODERN SPECIES 39 ENSCCRG00000005105 ENSCCRG00000010722 ENSCCRG00000072429 ENSCCRG00000026938 ENSCCRG00000024079 ENSCCRG00000074257 ENSCCRG00000069953 ENSCCRG00000032164 ENSCCRG00000075045 ENSCCRG00000077315 psma6l (ENSCCRG00000058024) otx5 (ENSCCRG00000062504) ENSCCRG00000069241 ENSCCRG00000059194 ENSCCRG00000015258 ##11 h3f3b.1 (ENSCCRG00000058606) ##35 ENSCCRG00000015263 #22 eif3k (ENSCCRG00000061494) ENSCCRG00000015273 tomt (ENSCCRG00000027212) inppl1a (ENSCCRG00000027201) ENSCCRG00000064997 CLPB (ENSCCRG00000069599) STARD10 (ENSCCRG00000055526) ENSCCRG00000043135 PDE2A (ENSCCRG00000058540) cep57 (ENSCCRG00000013803) ENSCCRG00000052923 zgc:153039 (ENSCCRG00000065574) ENSCCRG00000014612 chrd (ENSCCRG00000014623) Goldfish DUPLICATION Goldfish MODERN SPECIES 44 elavl3 (ENSCARG00000029645) prkcsh (ENSCARG00000029782) PDE4A (ENSCARG00000030768) raver1 (ENSCARG00000032773) TYK2 (ENSCARG00000032920) ENSCARG00000033453 ENSCARG00000033473 ENSCARG00000033523 cdip1 (ENSCARG00000033532) polr3k (ENSCARG00000021253) snrnp25 (ENSCARG00000021269) MRTFB (ENSCARG00000021297) shisa9b (ENSCARG00000021364) UNKL (ENSCARG00000021385) IGFALS (ENSCARG00000021508) ENSCARG00000021515 ##35 gper1 (ENSCARG00000021524) taf6 (ENSCARG00000021536) ENSCARG00000021564 ENSCARG00000021568 sat2b (ENSCARG00000021572) naa38 (ENSCARG00000021587) FIS1 (ENSCARG00000021603) ENSCARG00000021623 ENSCARG00000021636 ENSCARG00000021664 grk1b (ENSCARG00000021681) rangrf (ENSCARG00000021691) slc25a35 (ENSCARG00000021703) tmem141 (ENSCARG00000021726) zmynd19 (ENSCARG00000021767) Goldfish MODERN SPECIES 34 ENSCARG00000063577 ENSCARG00000063570 gap43 (ENSCARG00000063566) ENSCARG00000063517 SIDT2 (ENSCARG00000063153) ENSCARG00000063116 socs9 (ENSCARG00000063074) paf1 (ENSCARG00000062681) ENSCARG00000062611 ENSCARG00000062602 SAMD4B (ENSCARG00000062440) psma6l (ENSCARG00000062392) otx5 (ENSCARG00000062381) ENSCARG00000062331 ENSCARG00000062311 ##11 h3f3b.1 (ENSCARG00000062294) ##35 ENSCARG00000062235 ENSCARG00000062155 tomt (ENSCARG00000062129) DMWD (ENSCARG00000062096) ENSCARG00000062046 ##11 ENSCARG00000062023 #22 ENSCARG00000061999 ##35 eif3k (ENSCARG00000061797) ENSCARG00000061787 tomt (ENSCARG00000061772) inppl1a (ENSCARG00000058711) inppl1a (ENSCARG00000061553) phox2a (ENSCARG00000058622) CLPB (ENSCARG00000054911) ENSCARG00000052655 Goldfish MODERN SPECIES 16 tsr3 (ENSCARG00000023724) ENSCARG00000023719 gnptg (ENSCARG00000023708) SBK1 (ENSCARG00000023702) pdpk1b (ENSCARG00000023556) NLRC3 (ENSCARG00000023489) cluap1 (ENSCARG00000023464) WDR90 (ENSCARG00000023132) rhot2 (ENSCARG00000022141) h1-0 (ENSCARG00000022118) rhbdl1 (ENSCARG00000022105) zgc:112496 (ENSCARG00000022098) wdr24 (ENSCARG00000022065) anks3 (ENSCARG00000022051) zgc:112185 (ENSCARG00000022041) ENSCARG00000022032 ##35 ENSCARG00000022026 ENSCARG00000022018 ENSCARG00000022007 decr2 (ENSCARG00000021980) rab11fip3 (ENSCARG00000021975) telo2 (ENSCARG00000021924) tmem204 (ENSCARG00000021902) ENSCARG00000021884 metrn (ENSCARG00000021871) ENSCARG00000021858 ENSCARG00000021853 ENSCARG00000021847 ENSCARG00000021842 ENSCARG00000021831 ENSCARG00000021823 Sarcopterygii ANCESTRAL SPECIES 65 ENSGT00440000037341.b.b ENSGT00940000161445 ENSGT00390000014682 ENSGT00390000014139 ENSGT00940000161057 ENSGT00940000158344.b ENSGT00390000002548 ENSGT00390000005826.a.a ENSGT01030000234640 ENSGT00940000158431.a.a.a.a.b.a ENSGT00940000160330 ENSGT00940000159112.b ENSGT00940000159256 ENSGT00390000017267 ENSGT01090000260005.a.b.a.b.b ENSGT01100000263504.a.b.a.b.a.b ##35 ENSGT00940000161634 ENSGT00530000063174.b ENSGT00940000160281 ENSGT00940000160500 ENSGT00940000161895 ENSGT00940000153348.C ENSGT00950000183147.A.b.a ENSGT00940000161428 ENSGT00940000160457 ENSGT00390000015495 ENSGT00940000157823 ENSGT00940000155454 ENSGT00940000160232 ENSGT00940000160655 ENSGT00940000159399 Coelacanth DUPLICATION Coelacanth MODERN SPECIES 239 zgc:101731 (ENSLACG00000005651) ENSLACG00000005895 ENSLACG00000006309 CHP2 (ENSLACG00000022104) dlc (ENSLACG00000007682) TIMM50 (ENSLACG00000008342) SUPT5H (ENSLACG00000008663) ENSLACG00000009687 ENSLACG00000022398 ENSLACG00000010727 med29 (ENSLACG00000011244) PAF1 (ENSLACG00000011342) socs9 (ENSLACG00000011486) SAMD4B (ENSLACG00000011679) gmfb (ENSLACG00000011952) h3f3b.1 (ENSLACG00000012115) ##35 ENSLACG00000012436 BICRA (ENSLACG00000012682) ENSLACG00000013135 ENSLACG00000013293 NAPA (ENSLACG00000013342) KPTN (ENSLACG00000013473) SLC8A2 (ENSLACG00000013880) MEIS3 (ENSLACG00000014906) ENSLACG00000015383 PSMD8 (ENSLACG00000015516) ENSLACG00000015654 ENSLACG00000015732 zgc:162730 (ENSLACG00000015980) zgc:172282 (ENSLACG00000016639) LRFN1 (ENSLACG00000017241) Coelacanth MODERN SPECIES 941 UNC13D (ENSLACG00000014220) UNK (ENSLACG00000014044) ENSLACG00000014008 ##35 ENSLACG00000013777 GALK1 (ENSLACG00000013683) ITGB4 (ENSLACG00000013199) SAP30BP (ENSLACG00000012541) RECQL5 (ENSLACG00000012080) ENSLACG00000010928 LLGL2 (ENSLACG00000009831) TSEN54 (ENSLACG00000009497) ENSLACG00000008586 ENSLACG00000004405 TMEM94 (ENSLACG00000002492) Coelacanth MODERN SPECIES 2345 ENSLACG00000008380 ##35 GPER1 (ENSLACG00000007221) ENSLACG00000005074 ENSLACG00000004051 C7orf50 (ENSLACG00000001909) Tetrapoda ANCESTRAL SPECIES 37 ENSGT00390000014682 ENSGT00390000014139 ENSGT00940000161057 ENSGT00940000158344.b ENSGT00390000002548 ENSGT00390000005826.a.a ENSGT00940000158431.a.a.a.a.b.a ENSGT00940000160330 ENSGT00940000159112.b ENSGT00940000161901 ENSGT00940000159256 ENSGT00390000017267 ENSGT01090000260005.a.b.a.b.b ENSGT01100000263504.a.b.a.a #22 ENSGT00940000171204 ENSGT01100000263504.a.b.a.b.a.b ##35 ENSGT00940000161634 ENSGT00940000160281 ENSGT00940000160500 ENSGT00940000161895 ENSGT00530000063174.b ENSGT00940000153348.C ENSGT00950000183147.A.b.a ENSGT00940000161428 ENSGT00940000160457 ENSGT00390000015495 ENSGT00940000157823 ENSGT00940000155454 ENSGT00940000160232 ENSGT00940000162064.c.a ENSGT00940000155736.D Anura ANCESTRAL SPECIES 120 ENSGT00950000182803.A.a.b ENSGT00390000008825.b.b ENSGT00390000009925.b ENSGT00940000156895 ENSGT00390000003595 ENSGT01090000260051.a ENSGT00390000011856 ENSGT00940000153578.A ENSGT00390000017589 ENSGT00940000157287 ENSGT00720000108861 ENSGT00900000141125 ENSGT00530000063718.a.a ENSGT00730000110939.b ENSGT00940000159360 ENSGT01100000263504.a.b.a.b.a.b ##35 ENSGT00940000167259 ENSGT00950000183187.B ENSGT01100000263555.b ENSGT00390000007870 ENSGT00940000157800 ENSGT00930000151032.B ENSGT00940000155335 ENSGT00950000182906.a.a.b ENSGT00390000004214 ENSGT00940000158256 ENSGT00390000016550 ENSGT00940000155738 Frog MODERN SPECIES 1 sphk1 (ENSXETG00000019540) prpsap1 (ENSXETG00000019542) ubald2 (ENSXETG00000039165) rnf157 (ENSXETG00000019548) foxj1 (ENSXETG00000019549) exoc7 (ENSXETG00000019551) galr2 (ENSXETG00000012621) srp68 (ENSXETG00000012631) evpl (ENSXETG00000012599) ten1 (ENSXETG00000034100) acox1 (ENSXETG00000012601) fbf1 (ENSXETG00000031231) unc13d (ENSXETG00000032296) trim47 (ENSXETG00000030167) unk (ENSXETG00000012578) ENSXETG00000047269 ##35 ENSXETG00000037090 galk1 (ENSXETG00000012573) itgb4 (ENSXETG00000012556) sap30bp (ENSXETG00000012553) ENSXETG00000044674 recql5 (ENSXETG00000032721) myo15b (ENSXETG00000032978) llgl2 (ENSXETG00000012529) tsen54 (ENSXETG00000012532) caskin2 (ENSXETG00000012526) ENSXETG00000045143 tmem94 (ENSXETG00000012524) grb2 (ENSXETG00000012520) jpt1 (ENSXETG00000043697) sumo2 (ENSXETG00000012516) Amniota ANCESTRAL SPECIES 34 ENSGT00940000170834 ENSGT00390000014682 ENSGT00390000014139 ENSGT00940000161057 ENSGT00940000158344.b ENSGT00390000002548 ENSGT00390000005826.a.a ENSGT00940000158431.a.a.a.a.b.a ENSGT00940000160330 ENSGT00940000159112.b ENSGT00940000161901 ENSGT00940000159256 ENSGT00390000017267 ENSGT00940000161069 ENSGT01090000260005.a.b.a.b.b ENSGT01100000263504.a.b.a.b.a.b ##35 ENSGT00940000161634 ENSGT00940000160281 ENSGT00940000160500 ENSGT00940000161895 ENSGT00530000063174.b ENSGT00940000153348.C ENSGT00950000183147.A.b.a ENSGT00940000161428 ENSGT00940000160457 ENSGT00390000015495 ENSGT00940000157823 ENSGT00940000178461 ENSGT00940000160232 ENSGT00940000162064.c.a.a.a.a ENSGT00940000155736.D Mammalia ANCESTRAL SPECIES ENSGT01100000263504.a.b.a.b.a.b ##35 Platypus MODERN SPECIES 16 ACTN4 (ENSOANG00000036034) EIF3K (ENSOANG00000012188) MAP4K1 (ENSOANG00000000504) RYR1 (ENSOANG00000047642) RASGRP4 (ENSOANG00000037488) ENSOANG00000037098 ENSOANG00000041545 PSMD8 (ENSOANG00000042903) ENSOANG00000003497 MEIS3 (ENSOANG00000048143) SLC8A2 (ENSOANG00000040184) KPTN (ENSOANG00000021752) NAPA (ENSOANG00000036278) NOP53 (ENSOANG00000050511) ENSOANG00000047615 ENSOANG00000032145 ##35 ENSOANG00000036512 ENSOANG00000048851 B3GNT8 (ENSOANG00000041802) BCKDHA (ENSOANG00000008790) EXOSC5 (ENSOANG00000044960) B9D2 (ENSOANG00000046421) TGFB1 (ENSOANG00000043657) CCDC97 (ENSOANG00000032082) HNRNPUL1 (ENSOANG00000011111) AXL (ENSOANG00000041297) ENSOANG00000000852 CYP2B6 (ENSOANG00000002327) ENSOANG00000011903 ENSOANG00000011904 ENSOANG00000041196 Theria ANCESTRAL SPECIES ENSGT01100000263504.a.b.a.b.a.b ##35 Marsupialia ANCESTRAL SPECIES ENSGT01100000263504.a.b.a.b.a.b ##35 Opossum MODERN SPECIES 6 ENSMODG00000029434 ENSMODG00000049908 ENSMODG00000045748 ENSMODG00000032767 C3orf38 (ENSMODG00000016949) ZNF654 (ENSMODG00000016943) CGGBP1 (ENSMODG00000048070) HTR1F (ENSMODG00000016947) ENSMODG00000016941 POU1F1 (ENSMODG00000016940) CHMP2B (ENSMODG00000016939) VGLL3 (ENSMODG00000016934) CADM2 (ENSMODG00000016922) ENSMODG00000042056 ENSMODG00000029019 ENSMODG00000025424 ##35 ENSMODG00000050682 ENSMODG00000016880 GBE1 (ENSMODG00000016876) ENSMODG00000029275 ROBO1 (ENSMODG00000016857) ENSMODG00000049434 ROBO2 (ENSMODG00000016811) ENSMODG00000025427 ENSMODG00000025428 Marsupialia_b ANCESTRAL SPECIES ENSGT01100000263504.a.b.a.b.a.b ##35 Tasmanian devil MODERN SPECIES 3 TP53BP2 (ENSSHAG00000015392) FBXO28 (ENSSHAG00000029324) DEGS1 (ENSSHAG00000004372) NVL (ENSSHAG00000005391) CNIH4 (ENSSHAG00000027162) ##8 WDR26 (ENSSHAG00000007205) ENSSHAG00000024047 LBR (ENSSHAG00000011098) #11 ENAH (ENSSHAG00000029257) #13 SRP9 (ENSSHAG00000013504) #15 EPHX1 (ENSSHAG00000013636) #16 TMEM63A (ENSSHAG00000020965) #17 ENSSHAG00000014345 #19 ENSSHAG00000014418 #20 SDE2 (ENSSHAG00000023306) #21 ENSSHAG00000031306 ##35 ACBD3 (ENSSHAG00000007387) #23 ENSSHAG00000032275 MIXL1 (ENSSHAG00000008490) #24 LIN9 (ENSSHAG00000008594) #25 PARP1 (ENSSHAG00000001991) #26 STUM (ENSSHAG00000025821) #27 ITPKB (ENSSHAG00000026815) #28 PSEN2 (ENSSHAG00000010004) #29 COQ8A (ENSSHAG00000010722) #30 ENSSHAG00000010887 #31 ENSSHAG00000007631 #32 SCCPDH (ENSSHAG00000023977) #34 CNST (ENSSHAG00000009416) ENSSHAG00000010044 #36 ENSSHAG00000030450 #37 Diprotodontia ANCESTRAL SPECIES ENSGT01100000263504.a.b.a.b.a.b ##35 Wallaby MODERN SPECIES 10577 ENSMEUG00000002508 ##35 Diprotodontia_a ANCESTRAL SPECIES ENSGT01100000263504.a.b.a.b.a.b ##35 Common wonbat MODERN SPECIES 1142 SAT1 (ENSVURG00010010927) APOO (ENSVURG00010010940) ENSVURG00010010951 KLHL15 (ENSVURG00010010959) ENSVURG00010010970 ENSVURG00010010984 ENSVURG00010010997 PDK3 (ENSVURG00010011005) PCYT1B (ENSVURG00010011032) POLA1 (ENSVURG00010011074) ARX (ENSVURG00010011250) ENSVURG00010011259 ENSVURG00010011265 ENSVURG00010011267 ##35 ENSVURG00010011271 Eutheria ANCESTRAL SPECIES ENSGT01100000263504.a.b.a.b.a.b ##35 Boreoeutheria ANCESTRAL SPECIES ENSGT01100000263504.a.b.a.b.a.b ##35 Laurasiatheria ANCESTRAL SPECIES ENSGT01100000263504.a.b.a.b.a.b ##35 Eulipotyphla ANCESTRAL SPECIES ENSGT01100000263504.a.b.a.b.a.b ##35 Common shrew MODERN SPECIES 12559 ENSSARG00000008590 ##35 Hedgehog MODERN SPECIES 8898 IL17F (ENSEEUG00000004993) MCM3 (ENSEEUG00000005026) ENSEEUG00000005180 ##35 Laurasiatheria_a DUPLICATION Laurasiatheria_a DUPLICATION Laurasiatheria_a ANCESTRAL SPECIES ENSGT01100000263504.a.b.a.b.a.b.hb.a ##35 Artiodactyla ANCESTRAL SPECIES ENSGT01100000263504.a.b.a.b.a.b.hb.a ##35 Artiodactyla_a ANCESTRAL SPECIES ENSGT01100000263504.a.b.a.b.a.b.hb.a ##35 Artiodactyla_b ANCESTRAL SPECIES ENSGT01100000263504.a.b.a.b.a.b.hb.a ##35 Pecora ANCESTRAL SPECIES ENSGT01100000263504.a.b.a.b.a.b.hb.a ##35 Percora_a ANCESTRAL SPECIES ENSGT01100000263504.a.b.a.b.a.b.hb.a ##35 Bovidae ANCESTRAL SPECIES ENSGT01100000263504.a.b.a.b.a.b.hb.a ##35 Bovinae ANCESTRAL SPECIES ENSGT01100000263504.a.b.a.b.a.b.hb.a ##35 Bos ANCESTRAL SPECIES ENSGT01100000263504.a.b.a.b.a.b.hb.a ##35 Bos_a ANCESTRAL SPECIES ENSGT01100000263504.a.b.a.b.a.b.hb.a ##35 Wild yak MODERN SPECIES 1263 ENSBMUG00000021351 ##35 SP4 (ENSBMUG00000021359) DNAH11 (ENSBMUG00000021473) CDCA7L (ENSBMUG00000021552) RAPGEF5 (ENSBMUG00000021608) ENSBMUG00000021670 TOMM7 (ENSBMUG00000021681) ENSBMUG00000021704 ##7 HYCC1 (ENSBMUG00000021772) ENSBMUG00000021806 ENSBMUG00000021819 NUP42 (ENSBMUG00000021833) GPNMB (ENSBMUG00000021869) ENSBMUG00000021884 MALSU1 (ENSBMUG00000021893) IGF2BP3 (ENSBMUG00000021927) Siberian musk deer MODERN SPECIES 352 FAM124B (ENSMMSG00000021882) SERPINE2 (ENSMMSG00000021812) MRPL44 (ENSMMSG00000021791) WDFY1 (ENSMMSG00000021759) AP1S3 (ENSMMSG00000021716) ENSMMSG00000021703 SCG2 (ENSMMSG00000021697) ENSMMSG00000021680 KCNE4 (ENSMMSG00000021674) ACSL3 (ENSMMSG00000021637) MOGAT1 (ENSMMSG00000021600) ENSMMSG00000021587 FARSB (ENSMMSG00000021542) SGPP2 (ENSMMSG00000021520) ENSMMSG00000021504 ENSMMSG00000021479 ##35 PAX3 (ENSMMSG00000021422) EPHA4 (ENSMMSG00000021358) SLC4A3 (ENSMMSG00000021303) STK11IP (ENSMMSG00000021269) INHA (ENSMMSG00000021236) OBSL1 (ENSMMSG00000021176) TMEM198 (ENSMMSG00000021123) CHPF (ENSMMSG00000021090) ASIC4 (ENSMMSG00000020936) ENSMMSG00000020906 GMPPA (ENSMMSG00000020877) SPEGNB (ENSMMSG00000020840) ENSMMSG00000020814 SPEG (ENSMMSG00000020273) DES (ENSMMSG00000020180) Laurasiatheria_a ANCESTRAL SPECIES ENSGT01100000263504.a.b.a.b.a.b.hb.b ##35 Artiodactyla ANCESTRAL SPECIES ENSGT01100000263504.a.b.a.b.a.b.hb.b ##35 Artiodactyla_a ANCESTRAL SPECIES ENSGT01100000263504.a.b.a.b.a.b.hb.b ##35 Artiodactyla_b ANCESTRAL SPECIES ENSGT01100000263504.a.b.a.b.a.b.hb.b ##35 Pecora ANCESTRAL SPECIES ENSGT01100000263504.a.b.a.b.a.b.hb.b ##35 Percora_a ANCESTRAL SPECIES ENSGT01100000263504.a.b.a.b.a.b.hb.b ##35 Siberian musk deer MODERN SPECIES 188 NVL (ENSMMSG00000020360) ENSMMSG00000020244 ##8 WDR26 (ENSMMSG00000020076) CNIH3 (ENSMMSG00000020039) #8 DNAH14 (ENSMMSG00000019767) #9 LBR (ENSMMSG00000019704) #11 ENAH (ENSMMSG00000019676) #13 SRP9 (ENSMMSG00000019636) #15 EPHX1 (ENSMMSG00000019599) #16 TMEM63A (ENSMMSG00000019545) #17 ENSMMSG00000019519 #20 PYCR2 (ENSMMSG00000019466) #19 ENSMMSG00000019436 #20 ENSMMSG00000019422 SDE2 (ENSMMSG00000019388) #21 ENSMMSG00000019373 ##35 ACBD3 (ENSMMSG00000019345) #23 ENSMMSG00000019330 ENSMMSG00000019312 ENSMMSG00000019292 MIXL1 (ENSMMSG00000019256) #24 LIN9 (ENSMMSG00000019171) #25 PARP1 (ENSMMSG00000019082) #26 Laurasiatheria_b ANCESTRAL SPECIES ENSGT01100000263504.a.b.a.b.a.b.hb.b ##35 Carnivora ANCESTRAL SPECIES ENSGT01100000263504.a.b.a.b.a.b.hb.b ##35 Caniformia ANCESTRAL SPECIES ENSGT01100000263504.a.b.a.b.a.b.hb.b ##35 Canidae ANCESTRAL SPECIES ENSGT01100000263504.a.b.a.b.a.b.hb.b ##35 Canis_lupus ANCESTRAL SPECIES 34 ENSGT00390000003595 ENSGT00920000149199 ENSGT01090000260051.a ENSGT00390000011856 ENSGT00940000153578.A ENSGT00940000153335.a.a ENSGT00390000017589 ENSGT00940000157287 ENSGT00720000108861 ENSGT00900000141125 ENSGT00940000161851 ENSGT00940000154334.l ENSGT00530000063718.a.a ENSGT00730000110939.b ENSGT00940000159360 ENSGT01100000263504.a.b.a.b.a.b.hb.b ##35 ENSGT00950000183187.B ENSGT01100000263555.b ENSGT00390000007870 ENSGT00520000062027 ENSGT00940000157800 ENSGT00930000151032.B ENSGT00950000182906.a.a.b ENSGT00390000004214 ENSGT00940000158256 ENSGT00390000016550 ENSGT00940000181148 ENSGT00940000155738 ENSGT00550000074902 ENSGT00940000153432.A.a ENSGT00390000014620 Dingo MODERN SPECIES 68 EXOC7 (ENSCAFG00020005949) GALR2 (ENSCAFG00020005939) SRP68 (ENSCAFG00020005284) ENSCAFG00020005268 ENSCAFG00020004960 CDK3 (ENSCAFG00020004948) TEN1 (ENSCAFG00020004947) ACOX1 (ENSCAFG00020004736) FBF1 (ENSCAFG00020004706) MRPL38 (ENSCAFG00020004693) TRIM65 (ENSCAFG00020004679) TRIM47 (ENSCAFG00020004657) WBP2 (ENSCAFG00020004593) UNC13D (ENSCAFG00020004480) UNK (ENSCAFG00020004454) ENSCAFG00020004444 ##35 GALK1 (ENSCAFG00020004441) ITGB4 (ENSCAFG00020001183) SAP30BP (ENSCAFG00020000844) SMIM5 (ENSCAFG00020000833) RECQL5 (ENSCAFG00020000819) ENSCAFG00020000371 LLGL2 (ENSCAFG00020000323) TSEN54 (ENSCAFG00020000312) CASKIN2 (ENSCAFG00020000304) TMEM94 (ENSCAFG00020000293) ENSCAFG00020000272 GRB2 (ENSCAFG00020000264) SLC25A19 (ENSCAFG00020000256) MIF4GD (ENSCAFG00020000237) MRPS7 (ENSCAFG00020000224) Laurasiatheria_a ANCESTRAL SPECIES ENSGT01100000263504.a.b.a.b.a.b.ib ##35 Artiodactyla ANCESTRAL SPECIES ENSGT01100000263504.a.b.a.b.a.b.ib ##35 Suina ANCESTRAL SPECIES ENSGT01100000263504.a.b.a.b.a.b.ib ##35 Pig MODERN SPECIES 17 OR2D2 (ENSSSCG00000031270) OR10A4 (ENSSSCG00000014602) ENSSSCG00000039077 ENSSSCG00000058386 OR6A2 (ENSSSCG00000014617) ENSSSCG00000061291 ENSSSCG00000059395 ENSSSCG00000014608 ENSSSCG00000014605 ENSSSCG00000043559 ENSSSCG00000062060 ENSSSCG00000057645 ENSSSCG00000055916 ENSSSCG00000057155 ENSSSCG00000052518 ENSSSCG00000053780 ##35 ENSSSCG00000033089 ENSSSCG00000058696 ENSSSCG00000061858 ENSSSCG00000014618 MRPL17 (ENSSSCG00000024693) DCHS1 (ENSSSCG00000029189) TPP1 (ENSSSCG00000023080) TAF10 (ENSSSCG00000029630) ILK (ENSSSCG00000023272) RRP8 (ENSSSCG00000023880) ENSSSCG00000039799 ENSSSCG00000045625 TIMM10B (ENSSSCG00000037299) ARFIP2 (ENSSSCG00000014625) TRIM3 (ENSSSCG00000059302) Artiodactyla_a ANCESTRAL SPECIES ENSGT01100000263504.a.b.a.b.a.b.ib ##35 Artiodactyla_b ANCESTRAL SPECIES ENSGT01100000263504.a.b.a.b.a.b.ib ##35 Pecora ANCESTRAL SPECIES ENSGT01100000263504.a.b.a.b.a.b.ib ##35 Yarkand deer MODERN SPECIES 3 RBPMS2 (ENSCHYG00000005045) OAZ2 (ENSCHYG00000005167) ZNF609 (ENSCHYG00000005274) ENSCHYG00000005301 TRIP4 (ENSCHYG00000005334) PCLAF (ENSCHYG00000005442) CSNK1G1 (ENSCHYG00000005550) ENSCHYG00000005700 SNX22 (ENSCHYG00000005765) SNX1 (ENSCHYG00000005852) CIAO2A (ENSCHYG00000005972) ENSCHYG00000005987 HERC1 (ENSCHYG00000006046) FBXL22 (ENSCHYG00000006365) USP3 (ENSCHYG00000006402) ENSCHYG00000006718 ##35 CA12 (ENSCHYG00000006765) ENSCHYG00000006915 APH1B (ENSCHYG00000006935) RAB8B (ENSCHYG00000006985) ENSCHYG00000007049 ENSCHYG00000007078 LACTB (ENSCHYG00000007150) TPM1 (ENSCHYG00000007247) TLN2 (ENSCHYG00000007530) ENSCHYG00000007706 ENSCHYG00000007733 ENSCHYG00000007764 VPS13C (ENSCHYG00000008027) RORA (ENSCHYG00000012326) ICE2 (ENSCHYG00000012586) Percora_a ANCESTRAL SPECIES ENSGT01100000263504.a.b.a.b.a.b.ib ##35 Siberian musk deer DUPLICATION Siberian musk deer DUPLICATION Siberian musk deer MODERN SPECIES 243 ENSMMSG00000001417 ENSMMSG00000001407 ENSMMSG00000001403 ENSMMSG00000001393 ENSMMSG00000001380 ENSMMSG00000001368 ENSMMSG00000001347 ENSMMSG00000001328 ENSMMSG00000000579 RPIA (ENSMMSG00000000421) EIF2AK3 (ENSMMSG00000000390) TEX37 (ENSMMSG00000000376) ENSMMSG00000000368 ENSMMSG00000000356 THNSL2 (ENSMMSG00000000263) ENSMMSG00000000180 ##35 FABP1 (ENSMMSG00000000158) SMYD1 (ENSMMSG00000013392) KRCC1 (ENSMMSG00000013372) ENSMMSG00000013362 ENSMMSG00000013353 ENSMMSG00000013342 ENSMMSG00000013307 ENSMMSG00000013170 RMND5A (ENSMMSG00000013127) RNF103 (ENSMMSG00000013106) CHMP3 (ENSMMSG00000013070) KDM3A (ENSMMSG00000013019) REEP1 (ENSMMSG00000012954) MRPL35 (ENSMMSG00000012898) IMMT (ENSMMSG00000012806) Siberian musk deer MODERN SPECIES 142 INTS10 (ENSMMSG00000000344) CSGALNACT1 (ENSMMSG00000000434) SH2D4A (ENSMMSG00000000491) PSD3 (ENSMMSG00000000549) ENSMMSG00000000666 ENSMMSG00000000675 ENSMMSG00000000687 LRRC3B (ENSMMSG00000000699) ENSMMSG00000000713 OXSM (ENSMMSG00000000726) ENSMMSG00000000761 TOP2B (ENSMMSG00000000938) RARB (ENSMMSG00000001288) THRB (ENSMMSG00000001321) NR1D2 (ENSMMSG00000001375) ENSMMSG00000001390 ##35 ENSMMSG00000001401 NKIRAS1 (ENSMMSG00000001410) UBE2E1 (ENSMMSG00000001430) UBE2E2 (ENSMMSG00000001470) ENSMMSG00000001509 ZNF385D (ENSMMSG00000001519) ENSMMSG00000001533 Siberian musk deer MODERN SPECIES 139 ZNF639 (ENSMMSG00000003462) KCNMB3 (ENSMMSG00000003476) PIK3CA (ENSMMSG00000003505) ZMAT3 (ENSMMSG00000003531) ENSMMSG00000003544 KCNMB2 (ENSMMSG00000003557) TBL1XR1 (ENSMMSG00000003575) NAALADL2 (ENSMMSG00000003624) ENSMMSG00000003679 NLGN1 (ENSMMSG00000003692) ENSMMSG00000003711 ENSMMSG00000003725 SPATA16 (ENSMMSG00000003744) ECT2 (ENSMMSG00000003783) NCEH1 (ENSMMSG00000003867) ENSMMSG00000003878 ##35 TNFSF10 (ENSMMSG00000003888) GHSR (ENSMMSG00000003895) FNDC3B (ENSMMSG00000003904) TMEM212 (ENSMMSG00000003921) PLD1 (ENSMMSG00000003941) TNIK (ENSMMSG00000004049) SLC2A2 (ENSMMSG00000004156) EIF5A2 (ENSMMSG00000004181) ENSMMSG00000004199 SLC7A14 (ENSMMSG00000004212) CLDN11 (ENSMMSG00000004219) SKIL (ENSMMSG00000004231) PRKCI (ENSMMSG00000004250) PHC3 (ENSMMSG00000004277) GPR160 (ENSMMSG00000004363) Bovidae ANCESTRAL SPECIES ENSGT01100000263504.a.b.a.b.a.b.ib ##35 Caprinae ANCESTRAL SPECIES ENSGT01100000263504.a.b.a.b.a.b.ib ##35 Rambouillet Sheep DUPLICATION Rambouillet Sheep MODERN SPECIES 4 TLDC2 (ENSOARG00020007972) SOGA1 (ENSOARG00020007906) DSN1 (ENSOARG00020007612) NDRG3 (ENSOARG00020007088) SLA2 (ENSOARG00020006981) RAB5IF (ENSOARG00020006916) TGIF2 (ENSOARG00020006869) MYL9 (ENSOARG00020006826) DLGAP4 (ENSOARG00020006383) AAR2 (ENSOARG00020006319) EPB41L1 (ENSOARG00020005892) CNBD2 (ENSOARG00020005681) SCAND1 (ENSOARG00020005660) ATP5MD (ENSOARG00020005650) PHF20 (ENSOARG00020005596) ENSOARG00020005582 ##35 RBM39 (ENSOARG00020005497) ENSOARG00020005473 ROMO1 (ENSOARG00020005455) NFS1 (ENSOARG00020005227) CPNE1 (ENSOARG00020005144) SPAG4 (ENSOARG00020005086) ENSOARG00020005073 ENSOARG00020004424 ERGIC3 (ENSOARG00020004342) ENSOARG00020004304 ENSOARG00020004249 CEP250 (ENSOARG00020004083) ENSOARG00020004055 GDF5 (ENSOARG00020004033) UQCC1 (ENSOARG00020003944) Rambouillet Sheep MODERN SPECIES 2 ZACN (ENSOARG00020012158) GALR2 (ENSOARG00020012118) SRP68 (ENSOARG00020011952) ENSOARG00020011593 CDK3 (ENSOARG00020011491) ENSOARG00020011444 TEN1 (ENSOARG00020011418) ACOX1 (ENSOARG00020011301) MRPL38 (ENSOARG00020011228) TRIM65 (ENSOARG00020011145) FBF1 (ENSOARG00020010978) TRIM47 (ENSOARG00020010837) WBP2 (ENSOARG00020010630) UNC13D (ENSOARG00020010518) UNK (ENSOARG00020010345) H3F3A (ENSOARG00020010273) ##35 GALK1 (ENSOARG00020010209) ITGB4 (ENSOARG00020009797) SAP30BP (ENSOARG00020009689) SMIM5 (ENSOARG00020009636) RECQL5 (ENSOARG00020009478) ENSOARG00020007814 LLGL2 (ENSOARG00020007369) TSEN54 (ENSOARG00020007255) CASKIN2 (ENSOARG00020007127) TMEM94 (ENSOARG00020006269) GRB2 (ENSOARG00020006190) SLC25A19 (ENSOARG00020006160) MIF4GD (ENSOARG00020006079) MRPS7 (ENSOARG00020006002) GGA3 (ENSOARG00020005717) Goat DUPLICATION Goat MODERN SPECIES 21 PCNX3 (ENSCHIG00000014153) MAP3K11 (ENSCHIG00000010206) KCNK7 (ENSCHIG00000019755) EHBP1L1 (ENSCHIG00000013648) FAM89B (ENSCHIG00000013562) ZNRD2 (ENSCHIG00000024780) LTBP3 (ENSCHIG00000023571) SCYL1 (ENSCHIG00000001421) FRMD8 (ENSCHIG00000013492) SLC25A45 (ENSCHIG00000015690) TIGD3 (ENSCHIG00000006241) DPF2 (ENSCHIG00000011852) CDC42EP2 (ENSCHIG00000010857) POLA2 (ENSCHIG00000021506) ENSCHIG00000018381 ENSCHIG00000008287 ##35 CAPN1 (ENSCHIG00000022422) SPDYC (ENSCHIG00000008930) SYVN1 (ENSCHIG00000023946) ENSCHIG00000010487 ENSCHIG00000017446 MRPL49 (ENSCHIG00000013156) ZNHIT2 (ENSCHIG00000009990) TM7SF2 (ENSCHIG00000008956) ##11 VPS51 (ENSCHIG00000024782) ZFPL1 (ENSCHIG00000018515) ENSCHIG00000013142 NAALADL1 (ENSCHIG00000023747) SAC3D1 (ENSCHIG00000017675) SNX15 (ENSCHIG00000017487) ARL2 (ENSCHIG00000021231) Goat MODERN SPECIES 210 ENSCHIG00000014301 ENSCHIG00000000956 ##35 Bovinae ANCESTRAL SPECIES 2 ENSGT00390000003420.b ENSGT00730000111899 ENSGT01030000234559.a.a.a ENSGT00950000183102.A.a ENSGT00940000159258 ENSGT00940000160036 ENSGT00940000160384 ENSGT00390000001201 ENSGT00940000163572 ENSGT00940000160775 ENSGT00940000162148 ENSGT00940000158364 ENSGT00940000159842 ENSGT00940000161753 ENSGT00940000154662 ENSGT01100000263504.a.b.a.b.a.b.ib ##35 ENSGT01030000234539.a.a.a ENSGT00940000162053 ENSGT00940000153487.b.a ENSGT00940000159261 ENSGT00940000160088 ENSGT01000000215054 ENSGT00940000159237 ENSGT00940000160050 ENSGT00530000063615.a ENSGT00940000159004 ENSGT00390000007100 ENSGT00940000159440 ENSGT00530000063841.b ENSGT00940000160191 ENSGT00940000154737.c Bos ANCESTRAL SPECIES 3 ENSGT00390000003420.b ENSGT00730000111899 ENSGT01030000234559.a.a.a ENSGT00950000183102.A.a ENSGT00940000159258 ENSGT00940000160036 ENSGT00940000160384 ENSGT00390000001201 ENSGT00940000163572 ENSGT00940000160775 ENSGT00940000162148 ENSGT00940000158364 ENSGT00940000159842 ENSGT00940000161753 ENSGT00940000154662 ENSGT01100000263504.a.b.a.b.a.b.ib ##35 ENSGT01030000234539.a.a.a ENSGT00940000162053 ENSGT00940000153487.b.a ENSGT00940000159261 ENSGT00940000160088 ENSGT01000000215054 ENSGT00940000159237 ENSGT00940000160050 ENSGT00530000063615.a ENSGT00940000159004 ENSGT00390000007100 ENSGT00940000159440 ENSGT00530000063841.b ENSGT00940000160191 ENSGT00940000154737.c Bos_b ANCESTRAL SPECIES 2 ENSGT00390000003420.b ENSGT00730000111899 ENSGT01030000234559.a.a.a ENSGT00950000183102.A.a ENSGT00940000159258 ENSGT00940000160036 ENSGT00940000160384 ENSGT00390000001201 ENSGT00940000163572 ENSGT00940000160775 ENSGT00940000162148 ENSGT00940000158364 ENSGT00940000159842 ENSGT00940000161753 ENSGT00940000154662 ENSGT01100000263504.a.b.a.b.a.b.ib ##35 ENSGT01030000234539.a.a.a ENSGT00940000162053 ENSGT00940000153487.b.a ENSGT00940000159261 ENSGT00940000160088 ENSGT01000000215054 ENSGT00940000159237 ENSGT00940000160050 ENSGT00530000063615.a ENSGT00940000159004 ENSGT00390000007100 ENSGT00940000159440 ENSGT00530000063841.b ENSGT00940000160191 ENSGT00940000154737.c Hybrid Bos Indicus MODERN SPECIES 7 NVL (ENSBIXG00005028887) DEGS1 (ENSBIXG00005028737) CNIH4 (ENSBIXG00005002358) ##8 WDR26 (ENSBIXG00005002380) CNIH3 (ENSBIXG00005028617) #8 DNAH14 (ENSBIXG00005004917) #9 LBR (ENSBIXG00005028146) #11 ENAH (ENSBIXG00005028092) #13 SRP9 (ENSBIXG00005027974) #15 EPHX1 (ENSBIXG00005027913) #16 TMEM63A (ENSBIXG00005027791) #17 ENSBIXG00005004759 #18 PYCR2 (ENSBIXG00005004750) #19 ENSBIXG00005027638 #20 SDE2 (ENSBIXG00005027604) #21 ENSBIXG00005027583 ##35 ACBD3 (ENSBIXG00005027541) #23 ENSBIXG00005027464 MIXL1 (ENSBIXG00005027457) #24 LIN9 (ENSBIXG00005027424) #25 PARP1 (ENSBIXG00005027371) #26 ENSBIXG00005007774 ENSBIXG00005027292 #27 ENSBIXG00005027257 ITPKB (ENSBIXG00005027239) #28 PSEN2 (ENSBIXG00005004681) #29 COQ8A (ENSBIXG00005027082) #30 CDC42BPA (ENSBIXG00005026924) #31 AHCTF1 (ENSBIXG00005026527) #32 ENSBIXG00005026353 ENSBIXG00005004497 #33 Cow DUPLICATION Cow MODERN SPECIES 26 GIPC3 (ENSBTAG00000050809) ENSBTAG00000053812 TBXA2R (ENSBTAG00000014944) CACTIN (ENSBTAG00000010373) PIP5K1C (ENSBTAG00000000710) TJP3 (ENSBTAG00000018342) APBA3 (ENSBTAG00000008395) MRPL54 (ENSBTAG00000008396) RAX2 (ENSBTAG00000009750) MATK (ENSBTAG00000006619) ZFR2 (ENSBTAG00000000755) ATCAY (ENSBTAG00000018375) NMRK2 (ENSBTAG00000031573) DAPK3 (ENSBTAG00000020417) EEF2 (ENSBTAG00000004258) ENSBTAG00000045914 ##35 PIAS4 (ENSBTAG00000000753) ZBTB7A (ENSBTAG00000020117) MAP2K2 (ENSBTAG00000024450) CREB3L3 (ENSBTAG00000010215) SIRT6 (ENSBTAG00000019909) ENSBTAG00000052694 ENSBTAG00000054046 EBI3 (ENSBTAG00000012829) YJU2 (ENSBTAG00000012830) SHD (ENSBTAG00000039696) TMIGD2 (ENSBTAG00000004936) FSD1 (ENSBTAG00000005999) ENSBTAG00000054165 STAP2 (ENSBTAG00000006001) MPND (ENSBTAG00000006005) Cow MODERN SPECIES 7 DEGS1 (ENSBTAG00000012705) NVL (ENSBTAG00000006718) CNIH4 (ENSBTAG00000019471) ##8 WDR26 (ENSBTAG00000011785) CNIH3 (ENSBTAG00000053199) #8 DNAH14 (ENSBTAG00000008449) #9 LBR (ENSBTAG00000008453) #11 ENAH (ENSBTAG00000016185) #13 SRP9 (ENSBTAG00000033322) #15 EPHX1 (ENSBTAG00000000140) #16 TMEM63A (ENSBTAG00000002854) #17 LEFTY2 (ENSBTAG00000055022) #18 PYCR2 (ENSBTAG00000005835) #19 ENSBTAG00000054752 #20 SDE2 (ENSBTAG00000012787) #21 H3-3A (ENSBTAG00000024561) ##35 ACBD3 (ENSBTAG00000013128) #23 MIXL1 (ENSBTAG00000002139) #24 LIN9 (ENSBTAG00000033267) #25 PARP1 (ENSBTAG00000000837) #26 ENSBTAG00000047233 STUM (ENSBTAG00000024560) #27 ENSBTAG00000033252 ITPKB (ENSBTAG00000053007) #28 PSEN2 (ENSBTAG00000013197) #29 COQ8A (ENSBTAG00000021880) #30 CDC42BPA (ENSBTAG00000022777) #31 AHCTF1 (ENSBTAG00000013949) #32 ENSBTAG00000049714 #33 SCCPDH (ENSBTAG00000003804) #34 H3-3D (ENSBTAG00000011508) #35 Bos_a ANCESTRAL SPECIES 2 ENSGT00940000161213 ENSGT00390000003420.b ENSGT01030000234559.a.a.a ENSGT00950000183102.A.a ENSGT00940000159258 ENSGT00940000160036 ENSGT00940000160384 ENSGT00390000001201 ENSGT00940000163572 ENSGT00940000160775 ENSGT00940000162148 ENSGT00940000158364 ENSGT00940000159842 ENSGT00940000161753 ENSGT00940000154662 ENSGT01100000263504.a.b.a.b.a.b.ib ##35 ENSGT01030000234539.a.a.a ENSGT00940000162053 ENSGT00940000153487.b.a ENSGT00940000159261 ENSGT00940000160088 ENSGT00940000159237 ENSGT00940000160050 ENSGT00530000063615.a ENSGT00940000159004 ENSGT00390000007100 ENSGT00940000159440 ENSGT00530000063841.b ENSGT00940000160191 ENSGT00940000154737.c ENSGT00440000034888 Domestic yak MODERN SPECIES 27 HMG20B (ENSBGRG00000021064) GIPC3 (ENSBGRG00000021004) TBXA2R (ENSBGRG00000020972) CACTIN (ENSBGRG00000020942) PIP5K1C (ENSBGRG00000020521) TJP3 (ENSBGRG00000019950) APBA3 (ENSBGRG00000019857) MRPL54 (ENSBGRG00000019811) RAX2 (ENSBGRG00000019785) MATK (ENSBGRG00000019523) ZFR2 (ENSBGRG00000019327) ATCAY (ENSBGRG00000019249) NMRK2 (ENSBGRG00000019172) DAPK3 (ENSBGRG00000019101) EEF2 (ENSBGRG00000018816) ENSBGRG00000018795 ##35 PIAS4 (ENSBGRG00000018519) ZBTB7A (ENSBGRG00000018478) MAP2K2 (ENSBGRG00000018429) CREB3L3 (ENSBGRG00000017902) SIRT6 (ENSBGRG00000017784) ANKRD24 (ENSBGRG00000017470) EBI3 (ENSBGRG00000017377) ENSBGRG00000017328 SHD (ENSBGRG00000017098) ENSBGRG00000017038 FSD1 (ENSBGRG00000016795) STAP2 (ENSBGRG00000016477) MPND (ENSBGRG00000015810) SH3GL1 (ENSBGRG00000015300) CHAF1A (ENSBGRG00000015141) Wild yak MODERN SPECIES 1236 RNF125 (ENSBMUG00000012156) TRAPPC8 (ENSBMUG00000012133) B4GALT6 (ENSBMUG00000012114) ENSBMUG00000012093 ##35 TTR (ENSBMUG00000012078) DSG2 (ENSBMUG00000012065) DSG3 (ENSBMUG00000012028) DSG4 (ENSBMUG00000012005) DSG1 (ENSBMUG00000011962) DSC1 (ENSBMUG00000011909) DSC2 (ENSBMUG00000011851) DSC3 (ENSBMUG00000011763) ENSBMUG00000011721 American bison DUPLICATION American bison MODERN SPECIES 3349 HMG20B (ENSBBBG00000023190) GIPC3 (ENSBBBG00000000334) TBXA2R (ENSBBBG00000000372) CACTIN (ENSBBBG00000000388) PIP5K1C (ENSBBBG00000000451) TJP3 (ENSBBBG00000023169) APBA3 (ENSBBBG00000006868) MRPL54 (ENSBBBG00000023057) RAX2 (ENSBBBG00000008182) MATK (ENSBBBG00000023026) ENSBBBG00000023003 ATCAY (ENSBBBG00000022991) ENSBBBG00000006028 DAPK3 (ENSBBBG00000022951) EEF2 (ENSBBBG00000022915) ENSBBBG00000022877 ##35 PIAS4 (ENSBBBG00000022869) ZBTB7A (ENSBBBG00000022852) MAP2K2 (ENSBBBG00000022851) CREB3L3 (ENSBBBG00000022831) SIRT6 (ENSBBBG00000022808) ENSBBBG00000008311 EBI3 (ENSBBBG00000022773) YJU2 (ENSBBBG00000022764) SHD (ENSBBBG00000022746) TMIGD2 (ENSBBBG00000022717) FSD1 (ENSBBBG00000022701) STAP2 (ENSBBBG00000008960) MPND (ENSBBBG00000022616) SH3GL1 (ENSBBBG00000022500) CHAF1A (ENSBBBG00000022444) American bison MODERN SPECIES 3054 ENSBBBG00000000689 ##35 VSTM2A (ENSBBBG00000000659) Cetacea ANCESTRAL SPECIES 23 ENSGT00390000002970 ENSGT00390000013448.a.a ENSGT00570000079239 ENSGT00950000182834.B ##8 ENSGT00940000153634.b ENSGT00950000182834.A.a.b.c #8 ENSGT00940000160505 #9 ENSGT00390000000417.a.a.b.a.b #11 ENSGT00940000157376.tb.a #13 ENSGT00390000018505.b #15 ENSGT00390000002210.d #16 ENSGT00940000159576 #17 ENSGT00950000183044.a.a.a.c #19 ENSGT00390000010056 #20 ENSGT00530000063402.b #21 ENSGT01100000263504.a.b.a.b.a.b.ib ##35 ENSGT00530000063651.a #23 ENSGT00940000162190 #24 ENSGT00390000003188 #25 ENSGT00940000156058 #26 ENSGT00390000008003 #27 ENSGT00940000156764.a #28 ENSGT00940000157923 #29 ENSGT00940000156810 #30 ENSGT01030000234517.H.b #31 ENSGT00390000018900 #32 ENSGT00940000163104 #33 ENSGT00390000004799 #34 ENSGT00390000005861 ENSGT00950000183142.a.b.a.b #36 ENSGT00940000156766 #37 Blue whale DUPLICATION Blue whale MODERN SPECIES 12 CDC27 (ENSBMSG00010018547) KANSL1 (ENSBMSG00010018746) ENSBMSG00010019109 SPPL2C (ENSBMSG00010019321) CRHR1 (ENSBMSG00010019636) ENSBMSG00010020964 NSF (ENSBMSG00010021007) WNT3 (ENSBMSG00010021104) WNT9B (ENSBMSG00010021124) GOSR2 (ENSBMSG00010021191) RPRML (ENSBMSG00010021227) ENSBMSG00010021232 LYZL6 (ENSBMSG00010021240) ENSBMSG00010021253 ENSBMSG00010021276 ENSBMSG00010021289 ##35 SCRN2 (ENSBMSG00010021305) LRRC46 (ENSBMSG00010021340) OSBPL7 (ENSBMSG00010021378) TBX21 (ENSBMSG00010021443) TBKBP1 (ENSBMSG00010021464) KPNB1 (ENSBMSG00010021489) NPEPPS (ENSBMSG00010021506) MRPL45 (ENSBMSG00010021543) GPR179 (ENSBMSG00010021578) SOCS7 (ENSBMSG00010021611) ARHGAP23 (ENSBMSG00010021635) SRCIN1 (ENSBMSG00010021712) EPOP (ENSBMSG00010021755) MLLT6 (ENSBMSG00010021759) CISD3 (ENSBMSG00010021765) Blue whale MODERN SPECIES 6 DTX2 (ENSBMSG00010010318) UPK3B (ENSBMSG00010010349) ENSBMSG00010010361 ENSBMSG00010010375 ENSBMSG00010010392 LRWD1 (ENSBMSG00010010398) ALKBH4 (ENSBMSG00010010417) ORAI2 (ENSBMSG00010010431) PRKRIP1 (ENSBMSG00010010444) ENSBMSG00010010447 SH2B2 (ENSBMSG00010010465) ENSBMSG00010010523 ENSBMSG00010010626 MYL10 (ENSBMSG00010010636) COL26A1 (ENSBMSG00010010656) ENSBMSG00010010687 ##35 IFT22 (ENSBMSG00010010699) FIS1 (ENSBMSG00010010724) CLDN15 (ENSBMSG00010010748) ZNHIT1 (ENSBMSG00010010767) PLOD3 (ENSBMSG00010010787) VGF (ENSBMSG00010010840) AP1S1 (ENSBMSG00010010846) SERPINE1 (ENSBMSG00010010867) TRIM56 (ENSBMSG00010010880) ACHE (ENSBMSG00010010898) UFSP1 (ENSBMSG00010010917) SRRT (ENSBMSG00010010942) TRIP6 (ENSBMSG00010010964) SLC12A9 (ENSBMSG00010010981) EPHB4 (ENSBMSG00010011026) Blue whale MODERN SPECIES 12 FOXJ1 (ENSBMSG00010018111) EXOC7 (ENSBMSG00010017803) GALR2 (ENSBMSG00010017639) SRP68 (ENSBMSG00010017518) ENSBMSG00010017412 CDK3 (ENSBMSG00010017355) ENSBMSG00010017319 ACOX1 (ENSBMSG00010017259) FBF1 (ENSBMSG00010016875) MRPL38 (ENSBMSG00010016803) TRIM65 (ENSBMSG00010016760) TRIM47 (ENSBMSG00010016737) WBP2 (ENSBMSG00010016579) UNC13D (ENSBMSG00010016442) UNK (ENSBMSG00010016398) ENSBMSG00010016358 ##35 GALK1 (ENSBMSG00010016254) ITGB4 (ENSBMSG00010016200) SAP30BP (ENSBMSG00010016133) SMIM5 (ENSBMSG00010016103) RECQL5 (ENSBMSG00010016008) ENSBMSG00010015905 ENSBMSG00010015556 LLGL2 (ENSBMSG00010015305) TSEN54 (ENSBMSG00010015258) CASKIN2 (ENSBMSG00010015224) TMEM94 (ENSBMSG00010014655) GRB2 (ENSBMSG00010014451) SLC25A19 (ENSBMSG00010014383) MIF4GD (ENSBMSG00010020366) ENSBMSG00010020331 Odontoceti ANCESTRAL SPECIES 24 ENSGT00940000153463.b ENSGT00390000002970 ENSGT00390000013448.a.a ENSGT00570000079239 ENSGT00950000182834.B ##8 ENSGT00940000153634.b ENSGT00950000182834.A.a.b.c #8 ENSGT00390000000417.a.a.b.a.b #11 ENSGT00940000157376.tb.a #13 ENSGT00390000018505.b #15 ENSGT00390000002210.d #16 ENSGT00940000159576 #17 ENSGT00950000183044.a.a.a.c #19 ENSGT00390000010056 #20 ENSGT00530000063402.b #21 ENSGT01100000263504.a.b.a.b.a.b.ib ##35 ENSGT00530000063651.a #23 ENSGT00940000162190 #24 ENSGT00390000003188 #25 ENSGT00940000156058 #26 ENSGT00390000008003 #27 ENSGT00940000156764.a #28 ENSGT00940000157923 #29 ENSGT00940000156810 #30 ENSGT01030000234517.H.b #31 ENSGT00390000018900 #32 ENSGT00940000163104 #33 ENSGT00390000004799 #34 ENSGT00390000005861 ENSGT00950000183142.a.b.a.b #36 ENSGT00940000156766 #37 Odontoceti_a ANCESTRAL SPECIES 27 ENSGT00940000153463.b ENSGT00390000002970 ENSGT00390000013448.a.a ENSGT00570000079239 ENSGT00950000182834.B ##8 ENSGT00940000153634.b ENSGT00950000182834.A.a.b.c #8 ENSGT00390000000417.a.a.b.a.b #11 ENSGT00940000157376.tb.a #13 ENSGT00390000018505.b #15 ENSGT00390000002210.d #16 ENSGT00940000159576 #17 ENSGT00950000183044.a.a.a.c #19 ENSGT00390000010056 #20 ENSGT00530000063402.b #21 ENSGT01100000263504.a.b.a.b.a.b.ib ##35 ENSGT00530000063651.a #23 ENSGT00940000162190 #24 ENSGT00390000003188 #25 ENSGT00940000156058 #26 ENSGT00390000008003 #27 ENSGT00940000156764.a #28 ENSGT00940000157923 #29 ENSGT00940000156810 #30 ENSGT01030000234517.H.b #31 ENSGT00390000018900 #32 ENSGT00940000163104 #33 ENSGT00390000004799 #34 ENSGT00390000005861 ENSGT00950000183142.a.b.a.b #36 ENSGT00940000156766 #37 Odontoceti_b ANCESTRAL SPECIES 2 ENSGT00940000154553.a.b ENSGT00910000147163 ENSGT00950000183193.B ENSGT01020000230438.B.b.b.a ENSGT00940000153431.a ENSGT00390000006205.b ENSGT00940000156572 ENSGT00970000193421.B ENSGT00950000183095.a.a ENSGT00940000159386 ENSGT00550000074845 ENSGT00950000182865.b.a.a ENSGT00950000183024.a.b.a ENSGT00940000160678.a ENSGT00940000154563.m.b ENSGT01100000263504.a.b.a.b.a.b.ib ##35 ENSGT00940000155573 ENSGT00940000156499 ENSGT01030000234551.k.d.b.a.a.a.b.b.b ENSGT01030000234551.k.d.b.a.a.a.a ENSGT01030000234551.k.d.b.a.a.a.b.a ENSGT01030000234551.k.d.b.a.a.b ENSGT01000000214889 ENSGT00390000000337 ENSGT00940000161993.a ENSGT00940000162110 ENSGT00940000161519 ENSGT00940000160923 ENSGT00940000160206 ENSGT00940000159445 ENSGT00950000182966.C.b Vaquita MODERN SPECIES 11 ENSPSNG00000017433 NUBPL (ENSPSNG00000017395) DTD2 (ENSPSNG00000017275) HEATR5A (ENSPSNG00000017090) HECTD1 (ENSPSNG00000016911) AP4S1 (ENSPSNG00000016811) STRN3 (ENSPSNG00000016653) COCH (ENSPSNG00000016321) ENSPSNG00000016285 SCFD1 (ENSPSNG00000016119) G2E3 (ENSPSNG00000015993) PRKD1 (ENSPSNG00000015859) FOXG1 (ENSPSNG00000015806) ENSPSNG00000015766 ENSPSNG00000015742 ENSPSNG00000015685 ##35 NOVA1 (ENSPSNG00000015532) STXBP6 (ENSPSNG00000015449) GZMB (ENSPSNG00000015289) ENSPSNG00000015017 GZMH (ENSPSNG00000014903) ENSPSNG00000014784 ENSPSNG00000014761 ENSPSNG00000014746 ENSPSNG00000014555 ENSPSNG00000014424 KHNYN (ENSPSNG00000014301) CBLN3 (ENSPSNG00000014168) NYNRIN (ENSPSNG00000014032) NFATC4 (ENSPSNG00000013549) ADCY4 (ENSPSNG00000013215) Monodontidae ANCESTRAL SPECIES 11 ENSGT00940000154553.a.b ENSGT00910000147163 ENSGT00950000183193.B ENSGT01020000230438.B.b.b.a ENSGT00940000153431.a ENSGT00390000006205.b ENSGT00940000156572 ENSGT00970000193421.B ENSGT00950000183095.a.a ENSGT00940000159386 ENSGT00550000074845 ENSGT00950000182865.b.a.a ENSGT00950000183024.a.b.a ENSGT00940000160678.a ENSGT00940000154563.m.b ENSGT01100000263504.a.b.a.b.a.b.ib ##35 ENSGT00940000155573 ENSGT00940000156499 ENSGT01030000234551.k.d.b.a.a.a.b.b.b ENSGT01030000234551.k.d.b.a.a.a.a ENSGT01030000234551.k.d.b.a.a.a.b.a ENSGT01030000234551.k.d.b.a.a.b ENSGT01100000263511.b.a.a.a.b.a.a.a.b.a.b.a.a.b.a.a.a.a.b.a Beluga whale DUPLICATION Beluga whale MODERN SPECIES 44 ARHGAP5 (ENSDLEG00000012779) ENSDLEG00000012791 NUBPL (ENSDLEG00000013432) GPR33 (ENSDLEG00000013450) DTD2 (ENSDLEG00000013452) HEATR5A (ENSDLEG00000013600) HECTD1 (ENSDLEG00000015830) AP4S1 (ENSDLEG00000015895) STRN3 (ENSDLEG00000015905) COCH (ENSDLEG00000015954) SCFD1 (ENSDLEG00000016160) G2E3 (ENSDLEG00000017592) PRKD1 (ENSDLEG00000017654) FOXG1 (ENSDLEG00000017768) ENSDLEG00000017774 ENSDLEG00000017806 ##35 NOVA1 (ENSDLEG00000017821) STXBP6 (ENSDLEG00000017850) GZMB (ENSDLEG00000017882) ENSDLEG00000017935 GZMH (ENSDLEG00000018044) ENSDLEG00000018087 ENSDLEG00000018089 CMA1 (ENSDLEG00000018102) SDR39U1 (ENSDLEG00000018121) ENSDLEG00000018130 ENSDLEG00000018139 CBLN3 (ENSDLEG00000018158) NYNRIN (ENSDLEG00000018176) NFATC4 (ENSDLEG00000018182) ENSDLEG00000018197 Beluga whale MODERN SPECIES 42 ARHGAP25 (ENSDLEG00000005744) ENSDLEG00000005710 BMP10 (ENSDLEG00000005697) ENSDLEG00000005689 GKN2 (ENSDLEG00000005673) GKN1 (ENSDLEG00000005657) ANTXR1 (ENSDLEG00000005620) GFPT1 (ENSDLEG00000005570) NFU1 (ENSDLEG00000005546) ENSDLEG00000005538 AAK1 (ENSDLEG00000005437) ANXA4 (ENSDLEG00000005419) GMCL1 (ENSDLEG00000005398) SNRNP27 (ENSDLEG00000005387) MXD1 (ENSDLEG00000005379) ENSDLEG00000005374 ##35 PCBP1 (ENSDLEG00000005372) ENSDLEG00000005367 CUNH2orf42 (ENSDLEG00000005359) ENSDLEG00000005347 PCYOX1 (ENSDLEG00000005335) SNRPG (ENSDLEG00000005308) ENSDLEG00000005295 TGFA (ENSDLEG00000005282) ADD2 (ENSDLEG00000005235) FIGLA (ENSDLEG00000005189) CLEC4F (ENSDLEG00000005176) CD207 (ENSDLEG00000005170) VAX2 (ENSDLEG00000005165) ATP6V1B1 (ENSDLEG00000005137) ANKRD53 (ENSDLEG00000005126) Narwhal DUPLICATION Narwhal MODERN SPECIES 308 ENSMMNG00015018891 NUBPL (ENSMMNG00015018841) GPR33 (ENSMMNG00015018815) DTD2 (ENSMMNG00015018797) HEATR5A (ENSMMNG00015018679) HECTD1 (ENSMMNG00015018463) AP4S1 (ENSMMNG00015018404) STRN3 (ENSMMNG00015018258) COCH (ENSMMNG00015018104) ENSMMNG00015018060 SCFD1 (ENSMMNG00015017990) G2E3 (ENSMMNG00015017922) PRKD1 (ENSMMNG00015017800) FOXG1 (ENSMMNG00015017758) ENSMMNG00015017733 ENSMMNG00015017696 ##35 NOVA1 (ENSMMNG00015017472) STXBP6 (ENSMMNG00015017391) GZMB (ENSMMNG00015017321) ENSMMNG00015017165 GZMH (ENSMMNG00015017095) ENSMMNG00015017063 ENSMMNG00015016597 ENSMMNG00015016445 ENSMMNG00015016428 CMA1 (ENSMMNG00015016383) ENSMMNG00015016329 ENSMMNG00015016268 CBLN3 (ENSMMNG00015016201) NYNRIN (ENSMMNG00015016108) NFATC4 (ENSMMNG00015015977) Narwhal MODERN SPECIES 305 PROKR1 (ENSMMNG00015015283) ARHGAP25 (ENSMMNG00015015108) BMP10 (ENSMMNG00015015084) ENSMMNG00015015070 GKN2 (ENSMMNG00015015048) GKN1 (ENSMMNG00015015029) ANTXR1 (ENSMMNG00015015005) GFPT1 (ENSMMNG00015014974) NFU1 (ENSMMNG00015014943) ENSMMNG00015014934 AAK1 (ENSMMNG00015014881) ANXA4 (ENSMMNG00015014849) ENSMMNG00015014824 ENSMMNG00015014799 MXD1 (ENSMMNG00015014776) ENSMMNG00015014724 ##35 PCBP1 (ENSMMNG00015014717) ENSMMNG00015014704 C2orf42 (ENSMMNG00015014664) ENSMMNG00015014614 PCYOX1 (ENSMMNG00015014565) ENSMMNG00015014552 ENSMMNG00015014529 TGFA (ENSMMNG00015014512) ADD2 (ENSMMNG00015014473) FIGLA (ENSMMNG00015014439) CLEC4F (ENSMMNG00015014409) CD207 (ENSMMNG00015014384) VAX2 (ENSMMNG00015014367) ATP6V1B1 (ENSMMNG00015014343) ANKRD53 (ENSMMNG00015014327) Narwhal MODERN SPECIES 304 ENSMMNG00015008235 DEGS1 (ENSMMNG00015008254) NVL (ENSMMNG00015008286) CNIH4 (ENSMMNG00015008342) ##8 WDR26 (ENSMMNG00015008361) CNIH3 (ENSMMNG00015008371) #8 LBR (ENSMMNG00015008386) #11 ENSMMNG00015008420 #13 SRP9 (ENSMMNG00015008443) #15 EPHX1 (ENSMMNG00015008464) #16 TMEM63A (ENSMMNG00015008488) #17 ENSMMNG00015008515 #20 PYCR2 (ENSMMNG00015008531) #19 ENSMMNG00015008553 #20 SDE2 (ENSMMNG00015008574) #21 ENSMMNG00015008586 ##35 ACBD3 (ENSMMNG00015008597) #23 MIXL1 (ENSMMNG00015008612) #24 LIN9 (ENSMMNG00015008632) #25 PARP1 (ENSMMNG00015008660) #26 STUM (ENSMMNG00015008698) #27 ITPKB (ENSMMNG00015000098) #28 PSEN2 (ENSMMNG00015000131) #29 COQ8A (ENSMMNG00015000182) #30 CDC42BPA (ENSMMNG00015000504) #31 ENSMMNG00015001190 AHCTF1 (ENSMMNG00015001241) #32 ENSMMNG00015001366 #33 SCCPDH (ENSMMNG00015001432) #34 CNST (ENSMMNG00015001499) TFB2M (ENSMMNG00015001555) #36 Laurasiatheria_b ANCESTRAL SPECIES ENSGT01100000263504.a.b.a.b.a.b.ib ##35 Laurasiatheria_c ANCESTRAL SPECIES ENSGT01100000263504.a.b.a.b.a.b.ib ##35 Equus ANCESTRAL SPECIES ENSGT01100000263504.a.b.a.b.a.b.ib ##35 Horse MODERN SPECIES 2 NUFIP2 (ENSECAG00000004975) MYO18A (ENSECAG00000020855) PIPOX (ENSECAG00000020327) SEZ6 (ENSECAG00000017142) PHF12 (ENSECAG00000016493) DHRS13 (ENSECAG00000014655) FLOT2 (ENSECAG00000012055) ERAL1 (ENSECAG00000013325) FAM222B (ENSECAG00000012016) TRAF4 (ENSECAG00000011568) NEK8 (ENSECAG00000009500) ENSECAG00000008928 TLCD1 (ENSECAG00000009427) PROCA1 (ENSECAG00000007184) SUPT6H (ENSECAG00000020521) ENSECAG00000051975 ##35 KIAA0100 (ENSECAG00000017711) RSKR (ENSECAG00000017356) SPAG5 (ENSECAG00000015456) ALDOC (ENSECAG00000013037) UNC119 (ENSECAG00000011487) SLC13A2 (ENSECAG00000008304) SLC46A1 (ENSECAG00000006826) SARM1 (ENSECAG00000004020) VTN (ENSECAG00000015904) SEBOX (ENSECAG00000015882) TMEM199 (ENSECAG00000015855) POLDIP2 (ENSECAG00000014272) TNFAIP1 (ENSECAG00000012727) TMEM97 (ENSECAG00000012404) IFT20 (ENSECAG00000009950) Chiroptera ANCESTRAL SPECIES ENSGT01100000263504.a.b.a.b.a.b.ib ##35 Megabat MODERN SPECIES 2385 ENSPVAG00000014903 ##35 ACP5 (ENSPVAG00000014902) ELOF1 (ENSPVAG00000014901) CNN1 (ENSPVAG00000014900) ECSIT (ENSPVAG00000014898) ZNF653 (ENSPVAG00000014895) ELAVL3 (ENSPVAG00000014893) PRKCSH (ENSPVAG00000014889) ODAD3 (ENSPVAG00000014886) RGL3 (ENSPVAG00000014884) EPOR (ENSPVAG00000014883) SWSAP1 (ENSPVAG00000014882) Microchiroptera ANCESTRAL SPECIES ENSGT01100000263504.a.b.a.b.a.b.ib ##35 Greater horseshoe bat DUPLICATION Greater horseshoe bat DUPLICATION Greater horseshoe bat MODERN SPECIES 22 RB1 (ENSRFEG00010000766) RCBTB2 (ENSRFEG00010000664) CYSLTR2 (ENSRFEG00010000615) ENSRFEG00010000603 FNDC3A (ENSRFEG00010000465) MLNR (ENSRFEG00010000358) CDADC1 (ENSRFEG00010000313) CAB39L (ENSRFEG00010000253) SETDB2 (ENSRFEG00010020537) PHF11 (ENSRFEG00010020499) RCBTB1 (ENSRFEG00010020444) ARL11 (ENSRFEG00010020430) ENSRFEG00010020394 KPNA3 (ENSRFEG00010020282) SPRYD7 (ENSRFEG00010020230) ENSRFEG00010020217 ##35 TRIM13 (ENSRFEG00010020213) KCNRG (ENSRFEG00010020187) DLEU7 (ENSRFEG00010020159) RNASEH2B (ENSRFEG00010020021) C13orf42 (ENSRFEG00010019956) FAM124A (ENSRFEG00010019925) INTS6 (ENSRFEG00010019695) WDFY2 (ENSRFEG00010019666) ATP7B (ENSRFEG00010019450) ALG11 (ENSRFEG00010019348) NEK5 (ENSRFEG00010018995) NEK3 (ENSRFEG00010018905) ENSRFEG00010018646 VPS36 (ENSRFEG00010018568) THSD1 (ENSRFEG00010018507) Greater horseshoe bat MODERN SPECIES 24 EFCAB11 (ENSRFEG00010009733) FOXN3 (ENSRFEG00010009812) TTC8 (ENSRFEG00010009898) EML5 (ENSRFEG00010010199) ZC3H14 (ENSRFEG00010010356) PTPN21 (ENSRFEG00010010878) SPATA7 (ENSRFEG00010010944) ENSRFEG00010011077 KCNK10 (ENSRFEG00010011135) ENSRFEG00010011219 GPR65 (ENSRFEG00010011274) GALC (ENSRFEG00010011294) ENSRFEG00010011765 FLRT2 (ENSRFEG00010011812) ENSRFEG00010011830 ENSRFEG00010011871 ##35 SEL1L (ENSRFEG00010011889) STON2 (ENSRFEG00010011966) ENSRFEG00010011999 GTF2A1 (ENSRFEG00010012049) TSHR (ENSRFEG00010012154) CEP128 (ENSRFEG00010012759) ENSRFEG00010012930 NRXN3 (ENSRFEG00010013015) ENSRFEG00010014071 ENSRFEG00010014112 ENSRFEG00010014135 ENSRFEG00010014210 ENSRFEG00010014256 ADCK1 (ENSRFEG00010014308) ENSRFEG00010014422 Greater horseshoe bat DUPLICATION Greater horseshoe bat MODERN SPECIES 2 CFAP68 (ENSRFEG00010012325) ALG9 (ENSRFEG00010012163) PPP2R1B (ENSRFEG00010011926) SIK2 (ENSRFEG00010011852) LAYN (ENSRFEG00010011444) HOATZ (ENSRFEG00010011320) BTG4 (ENSRFEG00010011226) POU2AF1 (ENSRFEG00010011189) POU2AF3 (ENSRFEG00010011079) POU2AF2 (ENSRFEG00010011003) ARHGAP20 (ENSRFEG00010010551) ENSRFEG00010010451 RDX (ENSRFEG00010010314) ZC3H12C (ENSRFEG00010010192) C11orf87 (ENSRFEG00010010156) ENSRFEG00010010141 ##35 DDX10 (ENSRFEG00010010069) ACAT1 (ENSRFEG00010010049) NPAT (ENSRFEG00010009984) ENSRFEG00010009954 ATM (ENSRFEG00010009837) C11orf65 (ENSRFEG00010009749) POGLUT3 (ENSRFEG00010009660) EXPH5 (ENSRFEG00010009629) CUL5 (ENSRFEG00010009566) RAB39A (ENSRFEG00010009515) SLC35F2 (ENSRFEG00010009447) ENSRFEG00010009424 ELMOD1 (ENSRFEG00010009290) ALKBH8 (ENSRFEG00010009220) CWF19L2 (ENSRFEG00010009178) Greater horseshoe bat MODERN SPECIES 13 EXOC7 (ENSRFEG00010013084) ZACN (ENSRFEG00010012899) GALR2 (ENSRFEG00010012876) SRP68 (ENSRFEG00010012745) ENSRFEG00010012619 CDK3 (ENSRFEG00010012596) TEN1 (ENSRFEG00010012500) ACOX1 (ENSRFEG00010012060) FBF1 (ENSRFEG00010010985) MRPL38 (ENSRFEG00010010908) TRIM65 (ENSRFEG00010010806) TRIM47 (ENSRFEG00010010689) WBP2 (ENSRFEG00010010485) UNC13D (ENSRFEG00010016420) UNK (ENSRFEG00010016271) ENSRFEG00010016176 ##35 GALK1 (ENSRFEG00010016104) ITGB4 (ENSRFEG00010015927) ENSRFEG00010015848 SAP30BP (ENSRFEG00010015732) SMIM5 (ENSRFEG00010015623) RECQL5 (ENSRFEG00010015234) ENSRFEG00010013837 LLGL2 (ENSRFEG00010013729) TSEN54 (ENSRFEG00010013644) CASKIN2 (ENSRFEG00010013505) TMEM94 (ENSRFEG00010013061) GRB2 (ENSRFEG00010012913) SLC25A19 (ENSRFEG00010012851) MIF4GD (ENSRFEG00010012677) ENSRFEG00010012535 Carnivora ANCESTRAL SPECIES ENSGT01100000263504.a.b.a.b.a.b.ib ##35 Felidae ANCESTRAL SPECIES ENSGT01100000263504.a.b.a.b.a.b.ib ##35 Panthera ANCESTRAL SPECIES 3 ENSGT00940000154427.A ENSGT01100000263540.A.b ENSGT00390000015152 ENSGT00940000159998 ENSGT00940000158098 ENSGT00940000156793 ENSGT00940000157459 ENSGT01030000234522.C.b.e.b.a.a.a ENSGT00390000016904 ENSGT01010000222336.a.a.a.pb ENSGT01010000222336.a.a.a.ob.b ENSGT01010000222336.a.a.a.ob.a.b ENSGT01010000222336.a.a.a.ob.a.a ENSGT00390000000083.a ENSGT00390000013207 ENSGT01100000263504.a.b.a.b.a.b.ib ##35 ENSGT00940000156005.f ENSGT00940000156891 ENSGT00940000158751 ENSGT00730000111019 ENSGT00390000016097 ENSGT00390000009546 ENSGT00940000159153 ENSGT00940000157159 ENSGT00950000183779 ENSGT00940000155944 ENSGT00940000157417 ENSGT00940000158243 ENSGT00940000161472 ENSGT00390000017666 ENSGT00940000161067 Tiger MODERN SPECIES 490 VSX2 (ENSPTIG00000016197) LIN52 (ENSPTIG00000016204) ALDH6A1 (ENSPTIG00000016228) BBOF1 (ENSPTIG00000016264) ENTPD5 (ENSPTIG00000016301) COQ6 (ENSPTIG00000016344) FAM161B (ENSPTIG00000016429) ZNF410 (ENSPTIG00000016457) PTGR2 (ENSPTIG00000016591) MIDEAS (ENSPTIG00000016612) PNMA1 (ENSPTIG00000006614) DNAL1 (ENSPTIG00000016650) ENSPTIG00000016670 ENSPTIG00000016688 HEATR4 (ENSPTIG00000016707) ENSPTIG00000006627 ##35 NUMB (ENSPTIG00000017010) PAPLN (ENSPTIG00000017131) PSEN1 (ENSPTIG00000017262) RBM25 (ENSPTIG00000017309) ZFYVE1 (ENSPTIG00000017344) ENSPTIG00000017388 DPF3 (ENSPTIG00000017482) RGS6 (ENSPTIG00000017631) SIPA1L1 (ENSPTIG00000017821) PCNX1 (ENSPTIG00000017962) MAP3K9 (ENSPTIG00000018191) MED6 (ENSPTIG00000018243) ENSPTIG00000018360 ENSPTIG00000018363 SYNJ2BP (ENSPTIG00000018377) Panthera_a ANCESTRAL SPECIES 7 ENSGT00940000154427.A ENSGT01100000263540.A.b ENSGT00390000015152 ENSGT00940000159998 ENSGT00940000158098 ENSGT00940000156793 ENSGT00940000157459 ENSGT01030000234522.C.b.e.b.a.a.a ENSGT00390000016904 ENSGT01010000222336.a.a.a.pb ENSGT01010000222336.a.a.a.ob.b ENSGT01010000222336.a.a.a.ob.a.b ENSGT01010000222336.a.a.a.ob.a.a ENSGT00390000000083.a ENSGT00390000013207 ENSGT01100000263504.a.b.a.b.a.b.ib ##35 ENSGT00940000156005.f ENSGT00940000156891 ENSGT00940000158751 ENSGT00730000111019 ENSGT00390000016097 ENSGT00390000009546 ENSGT00940000159153 ENSGT00940000157159 ENSGT00950000183779 ENSGT00940000155944 ENSGT00940000157417 ENSGT00940000158243 ENSGT00940000161472 ENSGT00390000017666 ENSGT00940000161067 leopard MODERN SPECIES 109 ALDH6A1 (ENSPPRG00000016252) BBOF1 (ENSPPRG00000018080) ENTPD5 (ENSPPRG00000021643) COQ6 (ENSPPRG00000025059) FAM161B (ENSPPRG00000025014) ZNF410 (ENSPPRG00000024973) PTGR2 (ENSPPRG00000024906) MIDEAS (ENSPPRG00000024652) PNMA1 (ENSPPRG00000020738) DNAL1 (ENSPPRG00000024432) ENSPPRG00000024290 ACOT4 (ENSPPRG00000024125) ENSPPRG00000024078 RIOX1 (ENSPPRG00000024007) HEATR4 (ENSPPRG00000000114) ENSPPRG00000020804 ##35 NUMB (ENSPPRG00000004643) PAPLN (ENSPPRG00000008382) PSEN1 (ENSPPRG00000009940) RBM25 (ENSPPRG00000017374) ZFYVE1 (ENSPPRG00000024613) ENSPPRG00000000080 lion MODERN SPECIES 6 BBOF1 (ENSPLOG00000001180) ENTPD5 (ENSPLOG00000001145) COQ6 (ENSPLOG00000001111) FAM161B (ENSPLOG00000001079) ZNF410 (ENSPLOG00000001034) PTGR2 (ENSPLOG00000000929) MIDEAS (ENSPLOG00000000882) PNMA1 (ENSPLOG00000000861) DNAL1 (ENSPLOG00000000836) ENSPLOG00000000753 ACOT6 (ENSPLOG00000000692) ACOT4 (ENSPLOG00000000671) ENSPLOG00000000646 RIOX1 (ENSPLOG00000000634) ENSPLOG00000000621 ENSPLOG00000000607 ##35 ENSPLOG00000000547 PAPLN (ENSPLOG00000000483) PSEN1 (ENSPLOG00000019082) RBM25 (ENSPLOG00000019022) ZFYVE1 (ENSPLOG00000018965) ENSPLOG00000018852 DPF3 (ENSPLOG00000018551) RGS6 (ENSPLOG00000018169) ENSPLOG00000018078 SIPA1L1 (ENSPLOG00000017972) PCNX1 (ENSPLOG00000017454) MAP3K9 (ENSPLOG00000017344) TTC9 (ENSPLOG00000017301) MED6 (ENSPLOG00000017203) ADAM20 (ENSPLOG00000017171) Caniformia ANCESTRAL SPECIES ENSGT01100000263504.a.b.a.b.a.b.ib ##35 Canidae ANCESTRAL SPECIES ENSGT01100000263504.a.b.a.b.a.b.ib ##35 Red fox MODERN SPECIES 44 CIITA (ENSVVUG00000017857) CLEC16A (ENSVVUG00000017880) SOCS1 (ENSVVUG00000017915) ENSVVUG00000017918 ENSVVUG00000017923 ENSVVUG00000017927 LITAF (ENSVVUG00000017969) SNN (ENSVVUG00000017985) TXNDC11 (ENSVVUG00000018015) ZC3H7A (ENSVVUG00000018163) RSL1D1 (ENSVVUG00000018170) GSPT1 (ENSVVUG00000018198) TNFRSF17 (ENSVVUG00000019344) ENSVVUG00000019349 SNX29 (ENSVVUG00000019366) ENSVVUG00000019436 ##35 CPPED1 (ENSVVUG00000019438) ENSVVUG00000019440 ENSVVUG00000019443 ENSVVUG00000019446 ERCC4 (ENSVVUG00000019453) MRTFB (ENSVVUG00000019462) PARN (ENSVVUG00000019509) BFAR (ENSVVUG00000019515) PLA2G10 (ENSVVUG00000019519) ENSVVUG00000019523 RRN3 (ENSVVUG00000019527) NTAN1 (ENSVVUG00000019538) PDXDC1 (ENSVVUG00000019544) MPV17L (ENSVVUG00000019567) ENSVVUG00000019570 Canis_lupus ANCESTRAL SPECIES ENSGT00950000182938.b.b.b.b.b.b ENSGT00940000162144 ENSGT00940000154470.a ENSGT00390000015600.c.b ENSGT00530000063340 ENSGT00940000154437 ENSGT00390000018044.b.a ENSGT00940000160524 ENSGT00940000156873 ENSGT00940000158002 ENSGT01030000234618.E ENSGT00390000016258 ENSGT00950000183103.d.a.b ENSGT01030000234535.E ENSGT00940000155301 ENSGT01100000263504.a.b.a.b.a.b.ib ##35 ENSGT00940000156170 ENSGT00940000159129 ENSGT00950000183065.C ENSGT00940000157449 ENSGT00730000111785 ENSGT00390000008823 ENSGT00940000161788 ENSGT00940000159487 ENSGT00950000183005.a.b ENSGT00940000158867 ENSGT00940000153112.D.h.b ENSGT00940000160973 ENSGT00940000157435 ENSGT00730000111224 ENSGT00950000183134.c.b Dog MODERN SPECIES CPLX4 (ENSCAFG00845000529) RAX (ENSCAFG00845000544) GRP (ENSCAFG00845000570) SEC11C (ENSCAFG00845000586) OACYL (ENSCAFG00845000613) ZNF532 (ENSCAFG00845000673) MALT1 (ENSCAFG00845000742) ALPK2 (ENSCAFG00845000830) NEDD4L (ENSCAFG00845001211) ATP8B1 (ENSCAFG00845001746) NARS1 (ENSCAFG00845001801) FECH (ENSCAFG00845001850) ONECUT2 (ENSCAFG00845001888) ST8SIA3 (ENSCAFG00845001921) WDR7 (ENSCAFG00845002062) ENSCAFG00845002237 ##35 TXNL1 (ENSCAFG00845002269) TCF4 (ENSCAFG00845002403) CCDC68 (ENSCAFG00845002566) RAB27B (ENSCAFG00845002581) ENSCAFG00845002605 CUPIN1 (ENSCAFG00845002731) STARD6 (ENSCAFG00845002868) POLI (ENSCAFG00845002887) MBD2 (ENSCAFG00845002942) ENSCAFG00845002966 DCC (ENSCAFG00845003053) ENSCAFG00845003189 MEX3C (ENSCAFG00845003206) SMAD4 (ENSCAFG00845003229) SMAD4 (ENSCAFG00845003249) Dingo DUPLICATION Dingo MODERN SPECIES 125 CPLX4 (ENSCAFG00020020089) RAX (ENSCAFG00020020090) GRP (ENSCAFG00020020093) SEC11C (ENSCAFG00020020098) ENSCAFG00020020107 ZNF532 (ENSCAFG00020020115) MALT1 (ENSCAFG00020020119) ALPK2 (ENSCAFG00020020128) NEDD4L (ENSCAFG00020020172) ATP8B1 (ENSCAFG00020020470) NARS1 (ENSCAFG00020021055) FECH (ENSCAFG00020021062) ONECUT2 (ENSCAFG00020021090) ST8SIA3 (ENSCAFG00020021095) WDR7 (ENSCAFG00020021129) ENSCAFG00020021173 ##35 TXNL1 (ENSCAFG00020021181) ENSCAFG00020021197 ENSCAFG00020021285 CCDC68 (ENSCAFG00020021589) RAB27B (ENSCAFG00020021594) ENSCAFG00020021601 ENSCAFG00020021603 C18orf54 (ENSCAFG00020021611) STARD6 (ENSCAFG00020021613) ENSCAFG00020021615 POLI (ENSCAFG00020021618) MBD2 (ENSCAFG00020021622) DCC (ENSCAFG00020021641) ENSCAFG00020021658 MEX3C (ENSCAFG00020021673) Dingo MODERN SPECIES 271 ENSCAFG00020001153 ENSCAFG00020001167 AHCTF1 (ENSCAFG00020001201) #32 ENSCAFG00020001339 #31 ENSCAFG00020001351 #31 CDC42BPA (ENSCAFG00020001364) #31 COQ8A (ENSCAFG00020001368) #30 PSEN2 (ENSCAFG00020001399) #29 ITPKB (ENSCAFG00020001406) #28 STUM (ENSCAFG00020001421) #27 PARP1 (ENSCAFG00020001660) #26 LIN9 (ENSCAFG00020003192) #25 ENSCAFG00020003200 ENSCAFG00020003202 ACBD3 (ENSCAFG00020003210) #23 ENSCAFG00020003228 ##35 SDE2 (ENSCAFG00020003247) #21 ENSCAFG00020003248 #20 PYCR2 (ENSCAFG00020003264) #19 TMEM63A (ENSCAFG00020003274) #17 EPHX1 (ENSCAFG00020003279) #16 SRP9 (ENSCAFG00020003285) #15 ENAH (ENSCAFG00020003296) #13 LBR (ENSCAFG00020003321) #11 ENSCAFG00020003326 #9 ENSCAFG00020003333 #9 ENSCAFG00020003357 ENSCAFG00020003361 ENSCAFG00020003365 CNIH3 (ENSCAFG00020003397) #8 WDR26 (ENSCAFG00020003429) Caniformia_b ANCESTRAL SPECIES 8 ENSGT00390000013448.a.a ENSGT00570000079239 ENSGT00950000182834.B ##8 ENSGT00940000153634.b ENSGT00950000182834.A.a.b.c #8 ENSGT00390000000412 ENSGT00940000160505 #9 ENSGT00390000000417.a.a.b.a.b #11 ENSGT00940000157376 #13 ENSGT00390000018505.b #15 ENSGT00390000002210.d #16 ENSGT00940000159576 #17 ENSGT00950000183044.a.a.a.c #19 ENSGT00390000010056 #20 ENSGT00530000063402.b #21 ENSGT01100000263504.a.b.a.b.a.b.ib ##35 ENSGT00530000063651.a #23 ENSGT00940000162190 #24 ENSGT00390000003188 #25 ENSGT00940000156058 #26 ENSGT00390000008003 #27 ENSGT00940000156764.a #28 ENSGT00940000157923 #29 ENSGT00940000156810 #30 ENSGT01030000234517.H.b #31 ENSGT00390000018900 #32 ENSGT00940000163104 #33 ENSGT00390000004799 #34 ENSGT00390000005861 ENSGT00950000183142.a.b.a.b #36 ENSGT00940000156766 #37 Mustelinae ANCESTRAL SPECIES 51 ENSGT00940000161841.n ENSGT00390000013448.a.a ENSGT00570000079239 ENSGT00950000182834.B ##8 ENSGT00940000153634.b ENSGT00950000182834.A.a.b.c #8 ENSGT00940000160505 #9 ENSGT00390000000417.a.a.b.a.b #11 ENSGT00940000157376 #13 ENSGT00390000018505.b #15 ENSGT00390000002210.d #16 ENSGT00940000159576 #17 ENSGT00950000183044.a.a.a.c #19 ENSGT00390000010056 #20 ENSGT00530000063402.b #21 ENSGT01100000263504.a.b.a.b.a.b.ib ##35 ENSGT00530000063651.a #23 ENSGT00390000003188 #25 ENSGT00940000156058 #26 ENSGT00390000008003 #27 ENSGT00940000156764.a #28 ENSGT00550000074794 ENSGT00940000162785 ENSGT00520000059630 ENSGT00390000008829 ENSGT00940000155161 ENSGT00390000013877 ENSGT01030000234618.B ENSGT00940000159554 ENSGT00940000157967 ENSGT00940000157143 American mink MODERN SPECIES 73 DEGS1 (ENSNVIG00000015892) NVL (ENSNVIG00000015670) CNIH4 (ENSNVIG00000015648) ##8 WDR26 (ENSNVIG00000015630) CNIH3 (ENSNVIG00000015610) #8 DNAH14 (ENSNVIG00000015327) #9 LBR (ENSNVIG00000015260) #11 ENAH (ENSNVIG00000015156) #13 SRP9 (ENSNVIG00000015125) #15 EPHX1 (ENSNVIG00000015107) #16 TMEM63A (ENSNVIG00000015042) #17 ENSNVIG00000015022 #20 PYCR2 (ENSNVIG00000014966) #19 ENSNVIG00000014955 #20 SDE2 (ENSNVIG00000014947) #21 ENSNVIG00000014926 ##35 ACBD3 (ENSNVIG00000014901) #23 LIN9 (ENSNVIG00000014864) #25 PARP1 (ENSNVIG00000014805) #26 STUM (ENSNVIG00000014784) #27 ITPKB (ENSNVIG00000014754) #28 PRDX6 (ENSNVIG00000014746) SLC9C2 (ENSNVIG00000014705) TEX50 (ENSNVIG00000014691) ANKRD45 (ENSNVIG00000014684) KLHL20 (ENSNVIG00000014655) CENPL (ENSNVIG00000014636) DARS2 (ENSNVIG00000014589) ZBTB37 (ENSNVIG00000014530) SERPINC1 (ENSNVIG00000014501) RC3H1 (ENSNVIG00000014438) Ursidae ANCESTRAL SPECIES 4 ENSGT00390000013448.a.a ENSGT00570000079239 ENSGT00950000182834.B ##8 ENSGT00940000153634.b ENSGT00950000182834.A.a.b.c #8 ENSGT00390000000412 ENSGT00940000160505 #9 ENSGT00390000000417.a.a.b.a.b #11 ENSGT00940000157376 #13 ENSGT00390000018505.b #15 ENSGT00390000002210.d #16 ENSGT00940000159576 #17 ENSGT00950000183044.a.a.a.c #19 ENSGT00390000010056 #20 ENSGT00530000063402.b #21 ENSGT01100000263504.a.b.a.b.a.b.ib ##35 ENSGT00530000063651.a #23 ENSGT00940000162190 #24 ENSGT00390000003188 #25 ENSGT00940000156058 #26 ENSGT00390000008003 #27 ENSGT00940000156764.a #28 ENSGT00940000157923 #29 ENSGT00940000156810 #30 ENSGT01030000234517.H.b #31 ENSGT00390000018900 #32 ENSGT00940000163104 #33 ENSGT00390000004799 #34 ENSGT00390000005861 ENSGT00950000183142.a.b.a.b #36 ENSGT00940000156766 #37 Giant Panda MODERN SPECIES 662 ENSAMEG00000025614 ##35 Ursus ANCESTRAL SPECIES 90 ENSGT00390000013448.a.a ENSGT00570000079239 ENSGT00950000182834.B ##8 ENSGT00940000153634.b ENSGT00950000182834.A.a.b.c #8 ENSGT00390000000412 ENSGT00940000160505.u #9 ENSGT00390000000417.a.a.b.a.b #11 ENSGT00940000157376 #13 ENSGT00390000018505.b #15 ENSGT00390000002210.d #16 ENSGT00940000159576 #17 ENSGT00950000183044.a.a.a.c #19 ENSGT00390000010056 #20 ENSGT00530000063402.b #21 ENSGT01100000263504.a.b.a.b.a.b.ib ##35 ENSGT00530000063651.a #23 ENSGT00390000003188 #25 ENSGT00940000156058 #26 ENSGT00390000008003 #27 ENSGT00940000156764.a #28 ENSGT00940000157923 #29 ENSGT00940000156810 #30 ENSGT01030000234517.H.b #31 ENSGT00390000018900 #32 ENSGT00940000163104 #33 ENSGT00390000004799 #34 ENSGT00390000005861 ENSGT00950000183142.a.b.a.b #36 ENSGT00940000156766 #37 ENSGT00940000160590 Polar bear MODERN SPECIES 99 NVL (ENSUMAG00000016175) CNIH4 (ENSUMAG00000016149) ##8 WDR26 (ENSUMAG00000016061) CNIH3 (ENSUMAG00000016035) #8 ENSUMAG00000016027 ENSUMAG00000015993 #9 ENSUMAG00000015973 #9 LBR (ENSUMAG00000015941) #11 ENSUMAG00000015934 #13 ENSUMAG00000015926 #13 SRP9 (ENSUMAG00000015908) #15 EPHX1 (ENSUMAG00000015847) #16 TMEM63A (ENSUMAG00000015417) #17 PYCR2 (ENSUMAG00000015272) #19 SDE2 (ENSUMAG00000015254) #21 ENSUMAG00000015236 ##35 ACBD3 (ENSUMAG00000015197) #23 LIN9 (ENSUMAG00000015190) #25 PARP1 (ENSUMAG00000014555) #26 ENSUMAG00000014454 #28 PSEN2 (ENSUMAG00000014436) #29 COQ8A (ENSUMAG00000014369) #30 CDC42BPA (ENSUMAG00000014320) #31 AHCTF1 (ENSUMAG00000013411) #32 ENSUMAG00000013333 #33 SCCPDH (ENSUMAG00000013328) #34 ENSUMAG00000013325 TFB2M (ENSUMAG00000013324) #36 ENSUMAG00000013322 ENSUMAG00000013317 #37 EFCAB2 (ENSUMAG00000013304) Euarchontoglires ANCESTRAL SPECIES ENSGT01100000263504.a.b.a.b.a.b ##35 Primates ANCESTRAL SPECIES ENSGT01100000263504.a.b.a.b.a.b ##35 Strepsirrhini ANCESTRAL SPECIES ENSGT01100000263504.a.b.a.b.a.b ##35 Bushbaby DUPLICATION Bushbaby MODERN SPECIES 140 ENSOGAG00000013532 RALY (ENSOGAG00000032337) ENSOGAG00000001417 AHCY (ENSOGAG00000016787) ITCH (ENSOGAG00000016792) ENSOGAG00000016802 MAP1LC3A (ENSOGAG00000027682) PIGU (ENSOGAG00000003518) TP53INP2 (ENSOGAG00000006332) NCOA6 (ENSOGAG00000006333) GGT7 (ENSOGAG00000012970) ACSS2 (ENSOGAG00000001803) GSS (ENSOGAG00000001806) MYH7B (ENSOGAG00000001809) TRPC4AP (ENSOGAG00000001822) ENSOGAG00000029126 ##35 ENSOGAG00000026955 EDEM2 (ENSOGAG00000001826) PROCR (ENSOGAG00000001829) MMP24 (ENSOGAG00000008970) EIF6 (ENSOGAG00000001831) FAM83C (ENSOGAG00000001833) UQCC1 (ENSOGAG00000001840) GDF5 (ENSOGAG00000029192) ENSOGAG00000000333 CEP250 (ENSOGAG00000034414) ENSOGAG00000000342 ENSOGAG00000026840 ERGIC3 (ENSOGAG00000026774) ENSOGAG00000030487 SPAG4 (ENSOGAG00000000805) Bushbaby MODERN SPECIES 160 VSTM2A (ENSOGAG00000005539) SEC61G (ENSOGAG00000010262) ENSOGAG00000031014 EGFR (ENSOGAG00000009092) LANCL2 (ENSOGAG00000009098) VOPP1 (ENSOGAG00000008223) ENSOGAG00000002817 #20 ENSOGAG00000033158 SDE2 (ENSOGAG00000002069) #21 ENSOGAG00000024312 ##35 ACBD3 (ENSOGAG00000004334) #23 MIXL1 (ENSOGAG00000027252) #24 ENSOGAG00000007352 #25 PARP1 (ENSOGAG00000016206) #26 ENSOGAG00000032900 ENSOGAG00000026713 #27 ENSOGAG00000027093 RHOU (ENSOGAG00000002345) RAB4A (ENSOGAG00000008356) ENSOGAG00000008357 ACTA1 (ENSOGAG00000016005) NUP133 (ENSOGAG00000006736) ENSOGAG00000006746 ENSOGAG00000003024 URB2 (ENSOGAG00000003021) Lemuriformes ANCESTRAL SPECIES ENSGT01100000263504.a.b.a.b.a.b ##35 Lemuriformes_a ANCESTRAL SPECIES ENSGT01100000263504.a.b.a.b.a.b ##35 Greater bamboo lemur MODERN SPECIES 970 ENSPSMG00000012716 ACER3 (ENSPSMG00000012733) B3GNT6 (ENSPSMG00000012738) CAPN5 (ENSPSMG00000012780) MYO7A (ENSPSMG00000012875) GDPD4 (ENSPSMG00000012887) ENSPSMG00000012895 PAK1 (ENSPSMG00000013092) AQP11 (ENSPSMG00000013331) CLNS1A (ENSPSMG00000013404) RSF1 (ENSPSMG00000013477) AAMDC (ENSPSMG00000013511) INTS4 (ENSPSMG00000013557) ENSPSMG00000013577 ##35 KCTD14 (ENSPSMG00000013579) THRSP (ENSPSMG00000013585) NDUFC2 (ENSPSMG00000013598) ALG8 (ENSPSMG00000013689) KCTD21 (ENSPSMG00000013751) ENSPSMG00000013755 USP35 (ENSPSMG00000013781) GAB2 (ENSPSMG00000013794) NARS2 (ENSPSMG00000013898) TENM4 (ENSPSMG00000014042) Mouse lemur MODERN SPECIES 7 EXOC7 (ENSMICG00000007750) ZACN (ENSMICG00000007743) GALR2 (ENSMICG00000038284) SRP68 (ENSMICG00000007726) EVPL (ENSMICG00000007705) CDK3 (ENSMICG00000045151) TEN1 (ENSMICG00000042402) ACOX1 (ENSMICG00000033103) FBF1 (ENSMICG00000007674) MRPL38 (ENSMICG00000045774) TRIM65 (ENSMICG00000035411) TRIM47 (ENSMICG00000007653) WBP2 (ENSMICG00000007645) UNC13D (ENSMICG00000007618) UNK (ENSMICG00000007591) ENSMICG00000041607 ##35 GALK1 (ENSMICG00000035768) ITGB4 (ENSMICG00000007555) SAP30BP (ENSMICG00000007548) RECQL5 (ENSMICG00000007529) SMIM5 (ENSMICG00000047767) MYO15B (ENSMICG00000043633) LLGL2 (ENSMICG00000007483) TSEN54 (ENSMICG00000044012) CASKIN2 (ENSMICG00000007455) TMEM94 (ENSMICG00000007421) GRB2 (ENSMICG00000007414) SLC25A19 (ENSMICG00000007405) MIF4GD (ENSMICG00000007607) MRPS7 (ENSMICG00000007599) GGA3 (ENSMICG00000007579) Haplorrhini ANCESTRAL SPECIES ENSGT01100000263504.a.b.a.b.a.b ##35 Simiiformes ANCESTRAL SPECIES ENSGT01100000263504.a.b.a.b.a.b ##35 Platyrrhini ANCESTRAL SPECIES ENSGT01100000263504.a.b.a.b.a.b ##35 Mas night monkey MODERN SPECIES 925 ENSANAG00000019875 ##35 ENSANAG00000023051 PLS3 (ENSANAG00000035343) ENSANAG00000025092 LRCH2 (ENSANAG00000032964) IL13RA2 (ENSANAG00000038042) HTR2C (ENSANAG00000029302) ENSANAG00000038242 AMOT (ENSANAG00000020413) LHFPL1 (ENSANAG00000033553) TRPC5 (ENSANAG00000034028) ALG13 (ENSANAG00000027292) SERTM2 (ENSANAG00000001590) DCX (ENSANAG00000036270) CAPN6 (ENSANAG00000038219) PAK3 (ENSANAG00000037154) Cebidae ANCESTRAL SPECIES ENSGT01100000263504.a.b.a.b.a.b ##35 Cebidae_a ANCESTRAL SPECIES ENSGT01100000263504.a.b.a.b.a.b ##35 Bolivian squirrel monkey MODERN SPECIES 165 TSPAN6 (ENSSBOG00000035182) SRPX2 (ENSSBOG00000027490) SYTL4 (ENSSBOG00000001847) ENSSBOG00000027919 CSTF2 (ENSSBOG00000021649) NOX1 (ENSSBOG00000026785) XKRX (ENSSBOG00000022190) ARL13A (ENSSBOG00000024611) TRMT2B (ENSSBOG00000020336) TMEM35A (ENSSBOG00000022548) CENPI (ENSSBOG00000010675) DRP2 (ENSSBOG00000023966) TAF7L (ENSSBOG00000023870) ENSSBOG00000029851 BTK (ENSSBOG00000028229) ENSSBOG00000018776 ##35 ENSSBOG00000033998 GLA (ENSSBOG00000035213) ARMCX4 (ENSSBOG00000033782) ARMCX1 (ENSSBOG00000018942) ENSSBOG00000021316 ZMAT1 (ENSSBOG00000029970) ENSSBOG00000028959 Marmoset MODERN SPECIES 11 ENSCJAG00000087109 PRKAA1 (ENSCJAG00000007341) TTC33 (ENSCJAG00000047411) PTGER4 (ENSCJAG00000007410) DAB2 (ENSCJAG00000007426) C9 (ENSCJAG00000007477) FYB1 (ENSCJAG00000007485) RICTOR (ENSCJAG00000007501) OSMR (ENSCJAG00000007577) ENSCJAG00000078983 ENSCJAG00000074673 LIFR (ENSCJAG00000007608) EGFLAM (ENSCJAG00000007668) GDNF (ENSCJAG00000007761) WDR70 (ENSCJAG00000007784) ENSCJAG00000070684 ##35 NUP155 (ENSCJAG00000017976) ENSCJAG00000085546 ENSCJAG00000078551 CPLANE1 (ENSCJAG00000018003) NIPBL (ENSCJAG00000018052) SLC1A3 (ENSCJAG00000018196) ENSCJAG00000082486 ENSCJAG00000069947 RANBP3L (ENSCJAG00000018235) NADK2 (ENSCJAG00000018248) SKP2 (ENSCJAG00000018275) LMBRD2 (ENSCJAG00000018328) UGT3A1 (ENSCJAG00000018354) ENSCJAG00000065949 CAPSL (ENSCJAG00000018371) Catarrhini ANCESTRAL SPECIES ENSGT01100000263504.a.b.a.b.a.b ##35 Hominoidea ANCESTRAL SPECIES ENSGT01100000263504.a.b.a.b.a.b ##35 Gibbon DUPLICATION Gibbon MODERN SPECIES 5 CKAP5 (ENSNLEG00000014160) LRP4 (ENSNLEG00000014206) CSTPP1 (ENSNLEG00000014283) ARFGAP2 (ENSNLEG00000014290) PACSIN3 (ENSNLEG00000014344) DDB2 (ENSNLEG00000014385) ACP2 (ENSNLEG00000014425) NR1H3 (ENSNLEG00000014458) MADD (ENSNLEG00000014491) ENSNLEG00000014525 SPI1 (ENSNLEG00000014555) ENSNLEG00000014565 PSMC3 (ENSNLEG00000014572) RAPSN (ENSNLEG00000014627) CELF1 (ENSNLEG00000014638) ENSNLEG00000033020 ##35 PTPMT1 (ENSNLEG00000033815) KBTBD4 (ENSNLEG00000014672) NDUFS3 (ENSNLEG00000028559) ENSNLEG00000014694 MTCH2 (ENSNLEG00000034575) AGBL2 (ENSNLEG00000014711) FNBP4 (ENSNLEG00000014720) NUP160 (ENSNLEG00000014735) ENSNLEG00000033967 PTPRJ (ENSNLEG00000014775) ENSNLEG00000027973 ENSNLEG00000031203 ENSNLEG00000017985 SLC35C1 (ENSNLEG00000017984) ENSNLEG00000017983 Gibbon MODERN SPECIES 4 ENSNLEG00000002127 GALR2 (ENSNLEG00000002077) SRP68 (ENSNLEG00000030920) EVPL (ENSNLEG00000001989) CDK3 (ENSNLEG00000001987) ENSNLEG00000034654 ACOX1 (ENSNLEG00000001872) ENSNLEG00000033184 ENSNLEG00000001842 MRPL38 (ENSNLEG00000001792) ENSNLEG00000030489 ENSNLEG00000001753 WBP2 (ENSNLEG00000001625) UNC13D (ENSNLEG00000001584) UNK (ENSNLEG00000001120) ENSNLEG00000034288 ##35 GALK1 (ENSNLEG00000001523) ITGB4 (ENSNLEG00000001287) SAP30BP (ENSNLEG00000001192) RECQL5 (ENSNLEG00000001129) SMIM6 (ENSNLEG00000030376) SMIM5 (ENSNLEG00000030736) ENSNLEG00000001105 LLGL2 (ENSNLEG00000001073) ENSNLEG00000001071 CASKIN2 (ENSNLEG00000000997) TMEM94 (ENSNLEG00000000882) GRB2 (ENSNLEG00000000865) ENSNLEG00000027839 SLC25A19 (ENSNLEG00000000813) MIF4GD (ENSNLEG00000000764) Cercopithecidae ANCESTRAL SPECIES ENSGT01100000263504.a.b.a.b.a.b ##35 Cercopithecinae ANCESTRAL SPECIES ENSGT01100000263504.a.b.a.b.a.b ##35 Cercopithecinae_a DUPLICATION Cercopithecinae_a DUPLICATION Cercopithecinae_a ANCESTRAL SPECIES ENSGT01100000263504.a.b.a.b.a.b.nb.a ##35 Macaca ANCESTRAL SPECIES ENSGT01100000263504.a.b.a.b.a.b.nb.a ##35 Macaca_a ANCESTRAL SPECIES ENSGT01100000263504.a.b.a.b.a.b.nb.a ##35 Crab-eating macaque MODERN SPECIES 10 SPHK2 (ENSMFAG00000036114) CA11 (ENSMFAG00000003432) ENSMFAG00000049242 FUT2 (ENSMFAG00000065065) MAMSTR (ENSMFAG00000045502) ENSMFAG00000002655 IZUMO1 (ENSMFAG00000016667) FUT1 (ENSMFAG00000064726) FGF21 (ENSMFAG00000031896) BCAT2 (ENSMFAG00000001784) ENSMFAG00000050388 PLEKHA4 (ENSMFAG00000040559) PPP1R15A (ENSMFAG00000041869) TULP2 (ENSMFAG00000000586) NUCB1 (ENSMFAG00000003135) ENSMFAG00000029389 ##35 SLC6A16 (ENSMFAG00000017537) ENSMFAG00000032972 TEAD2 (ENSMFAG00000035667) DKKL1 (ENSMFAG00000033720) KASH5 (ENSMFAG00000008806) NOSIP (ENSMFAG00000031153) PRRG2 (ENSMFAG00000034285) RRAS (ENSMFAG00000029942) ENSMFAG00000048188 IRF3 (ENSMFAG00000033004) BCL2L12 (ENSMFAG00000042931) PRMT1 (ENSMFAG00000043429) ADM5 (ENSMFAG00000029240) CPT1C (ENSMFAG00000039271) TSKS (ENSMFAG00000046167) Pig-tailed macaque MODERN SPECIES 248 DPY19L4 (ENSMNEG00000032177) INTS8 (ENSMNEG00000032790) CCNE2 (ENSMNEG00000035282) TP53INP1 (ENSMNEG00000028730) LHB (ENSMNEG00000038560) ENSMNEG00000036413 RUVBL2 (ENSMNEG00000035982) ENSMNEG00000029682 NTF4 (ENSMNEG00000008451) KCNA7 (ENSMNEG00000036415) SNRNP70 (ENSMNEG00000038057) LIN7B (ENSMNEG00000036207) PPFIA3 (ENSMNEG00000044190) HRC (ENSMNEG00000032961) TRPM4 (ENSMNEG00000044458) ENSMNEG00000031663 ##35 SLC6A16 (ENSMNEG00000032765) CD37 (ENSMNEG00000040079) TEAD2 (ENSMNEG00000030869) DKKL1 (ENSMNEG00000040824) KASH5 (ENSMNEG00000040116) PTH2 (ENSMNEG00000045538) GFY (ENSMNEG00000045535) SLC17A7 (ENSMNEG00000036752) PIH1D1 (ENSMNEG00000035306) ALDH16A1 (ENSMNEG00000039451) FLT3LG (ENSMNEG00000029282) ENSMNEG00000034977 RPS11 (ENSMNEG00000043643) FCGRT (ENSMNEG00000036913) RCN3 (ENSMNEG00000031036) Cercopithecinae_a ANCESTRAL SPECIES 24 ENSGT00940000156821.e.a ENSGT00940000156821.e.b ENSGT00940000162786 ENSGT00940000156366.a.b ENSGT00940000161301.c.b.a ENSGT00390000008529 ENSGT00730000110943.B ENSGT00940000155794 ENSGT00940000154601.c.b ENSGT00940000154601.c.a ENSGT00940000162815 ENSGT00610000086153 ENSGT00390000000571 ENSGT00390000004906 ENSGT01030000234555.a.a.a.c.b ENSGT01100000263504.a.b.a.b.a.b.nb.b ##35 ENSGT00940000153592.B.b.b ENSGT01100000263584.b.b.a ENSGT00940000163029.u.b ENSGT00940000154556.tb.b ENSGT00910000147500 ENSGT01100000263584.b.b.b ENSGT00940000153491.b.a ENSGT00390000003833 ENSGT00940000159687 ENSGT00500000044989 ENSGT00940000160353 ENSGT00940000153307.c.a.g ENSGT00940000153307.c.b.b.c.c.a ENSGT00940000153307.c.b.b.d.b ENSGT00940000153307.c.b.b.d.a Macaca ANCESTRAL SPECIES 27 ENSGT00940000161301.c.a ENSGT00940000156821.e.a ENSGT00940000156821.e.b ENSGT00940000162786 ENSGT00940000156366.a.b ENSGT00940000161301.c.b.a ENSGT00390000008529 ENSGT00730000110943.B ENSGT00940000155794 ENSGT00940000154601.c.a ENSGT00940000162815 ENSGT00610000086153 ENSGT00390000000571 ENSGT00390000004906 ENSGT01030000234555.a.a.a.c.b ENSGT01100000263504.a.b.a.b.a.b.nb.b ##35 ENSGT00940000153592.B.b.b ENSGT01100000263584.b.b.a ENSGT00940000163029.u.b ENSGT00940000154556.tb.b ENSGT00940000153491.b.a ENSGT01100000263584.b.b.b ENSGT00940000159687 ENSGT00500000044989 ENSGT00940000160353 ENSGT00940000153307.c.a.g ENSGT00940000153307.c.b.b.c.c.a ENSGT00940000153307.c.b.b.d.a.a ENSGT00940000153120.k.b ENSGT00940000154179.m.a.b.b ENSGT00940000153934.a.a.d Macaca_a ANCESTRAL SPECIES 23 ENSGT00940000162786 ENSGT00940000156366.a.b ENSGT00940000161301.c.b.a ENSGT00390000008529 ENSGT00730000110943.B ENSGT00940000155794 ENSGT00940000154601.c.b ENSGT00940000154601.c.a ENSGT00940000162815 ENSGT01030000240290 ENSGT00610000086153 ENSGT00390000000571 ENSGT00390000004906 ENSGT01100000263493.a.a.b.a.b.a.b.a.b ENSGT01030000234555.a.a.a.c.b ENSGT01100000263504.a.b.a.b.a.b.nb.b ##35 ENSGT00940000153592.B.b.b ENSGT01100000263584.b.b.a ENSGT00940000163029.u.b ENSGT00940000154556.tb.b ENSGT00940000153491.b.a ENSGT01100000263584.b.b.b ENSGT00940000159687 ENSGT00500000044989 ENSGT00940000160353 ENSGT00940000153307.c.a.g ENSGT00940000153307.c.b.b.c.c.a ENSGT00940000153307.c.b.b.d.a.a ENSGT00940000154179.m.a.b.b ENSGT00940000153934.a.a.d ENSGT00940000153120.k.a.b.a.k.a Crab-eating macaque MODERN SPECIES 1 ENSMFAG00000055306 ENSMFAG00000041281 ENSMFAG00000033266 CABIN1 (ENSMFAG00000045334) SUSD2 (ENSMFAG00000010252) GGT5 (ENSMFAG00000001878) ENSMFAG00000029063 LRRC75B (ENSMFAG00000037291) ENSMFAG00000060861 SNRPD3 (ENSMFAG00000033628) GUCD1 (ENSMFAG00000034092) UPB1 (ENSMFAG00000045510) ENSMFAG00000050188 ADORA2A (ENSMFAG00000031796) SPECC1L (ENSMFAG00000031971) ENSMFAG00000048124 ##35 ENSMFAG00000013705 ENSMFAG00000003707 ENSMFAG00000059927 ENSMFAG00000003497 BCR (ENSMFAG00000044501) ENSMFAG00000015927 RAB36 (ENSMFAG00000003128) RSPH14 (ENSMFAG00000044101) GNAZ (ENSMFAG00000045950) ENSMFAG00000001839 ENSMFAG00000063102 ENSMFAG00000062312 ENSMFAG00000035597 IGLV4-3 (ENSMFAG00000056661) IGLV3-9 (ENSMFAG00000025871) Cercopithecinae_b ANCESTRAL SPECIES 50 ENSGT00940000153307.c.a.h.k.a.a ENSGT00520000056310.A.d ENSGT00940000161598.f.c.b ENSGT01100000263584.a.b ENSGT00940000154601.c.a ENSGT00940000162815 ENSGT00610000086153 ENSGT00390000000571 ENSGT00390000004906 ENSGT01030000234555.a.a.a.c.b ENSGT01100000263504.a.b.a.b.a.b.nb.b ##35 ENSGT00940000153592.B.b.b ENSGT01100000263584.b.a ENSGT00940000163029.u.b ENSGT00940000154556.tb.b ENSGT00910000147500 ENSGT00940000153491.b.a ENSGT00390000003833 ENSGT00940000159687 ENSGT00940000160353 ENSGT00500000044989 ENSGT00940000153307.c.a.g ENSGT00940000153120.k.b ENSGT00940000154179.m.a.b.b ENSGT00940000153934.a.a.d ENSGT00940000153120.k.a.b.a.k.a Cercopithecinae_d ANCESTRAL SPECIES 107 ENSGT01100000263584.a.b ENSGT00940000154601.c.a ENSGT00940000162815 ENSGT00610000086153 ENSGT00390000000571 ENSGT00390000004906 ENSGT01030000234555.a.a.a.c.b ENSGT01100000263504.a.b.a.b.a.b.nb.b ##35 ENSGT00940000153592.B.b.b ENSGT01100000263584.b.a.a ENSGT01100000263584.b.a.b ENSGT00940000163029.u.b ENSGT00940000154556.tb.b ENSGT00910000147500 ENSGT00940000153491.b.a ENSGT01100000263584.b.b.b ENSGT00940000159687 ENSGT00500000044989 ENSGT00940000160353 ENSGT00940000153307.c.b.b.d.b ENSGT00940000153307.c.b.b.c.c.b ENSGT00940000153307.c.b.b.c.d ENSGT00940000153120.k.b Drill MODERN SPECIES 1003 ENSMLEG00000033515 ENSMLEG00000043324 ENSMLEG00000028427 ENSMLEG00000040213 LRRC75B (ENSMLEG00000037962) SNRPD3 (ENSMLEG00000037548) GUCD1 (ENSMLEG00000031029) UPB1 (ENSMLEG00000038023) ADORA2A (ENSMLEG00000028854) SPECC1L (ENSMLEG00000039212) ENSMLEG00000009871 ##35 ENSMLEG00000025505 ENSMLEG00000037438 ENSMLEG00000037929 BCR (ENSMLEG00000042208) ENSMLEG00000027968 RAB36 (ENSMLEG00000034054) RSPH14 (ENSMLEG00000035722) GNAZ (ENSMLEG00000036503) ENSMLEG00000028414 ENSMLEG00000020697 ENSMLEG00000041297 ENSMLEG00000020081 ENSMLEG00000035582 ENSMLEG00000011721 ENSMLEG00000027701 Olive baboon MODERN SPECIES 7 PPIL2 (ENSPANG00000020040) YPEL1 (ENSPANG00000022265) MAPK1 (ENSPANG00000024584) PPM1F (ENSPANG00000025012) TOP3B (ENSPANG00000019634) VPREB1 (ENSPANG00000014235) ENSPANG00000032508 ENSPANG00000036080 IGLV11-55 (ENSPANG00000032293) IGLV10-54 (ENSPANG00000006977) ENSPANG00000042005 ENSPANG00000045865 IGLV4-69 (ENSPANG00000022435) IGLV5-52 (ENSPANG00000047720) ENSPANG00000032966 ENSPANG00000046924 ##35 BCR (ENSPANG00000000445) ENSPANG00000047809 RAB36 (ENSPANG00000019629) GNAZ (ENSPANG00000024410) RSPH14 (ENSPANG00000024409) ENSPANG00000049480 IGLV3-1 (ENSPANG00000004879) ENSPANG00000039555 ENSPANG00000034615 IGLV3-9 (ENSPANG00000032868) IGLV3-10 (ENSPANG00000029924) ENSPANG00000039374 ENSPANG00000040434 ENSPANG00000039301 ENSPANG00000044911 Cercopithecinae_a ANCESTRAL SPECIES 6 ENSGT00950000182962.b.b ENSGT00530000063583.b ENSGT00390000002881 ENSGT00390000018635.c ENSGT00940000160723 ENSGT00940000158213 ENSGT00940000162994.e.a.c ENSGT00390000018509.a.n ENSGT00390000000510 ENSGT00390000007279.c.a ENSGT00940000155416.a.b.e.b ENSGT00940000157966 ENSGT00530000063320.B ENSGT00940000156226 ENSGT00940000161944 ENSGT01100000263504.a.b.a.b.a.b.ob ##35 ENSGT00940000155462 ENSGT00940000160119 ENSGT00940000155723.a ENSGT00390000017996.b ENSGT00910000147633 ENSGT00940000159970 ENSGT00940000154281.m.b.a.a.a.a ENSGT00730000111419 ENSGT00940000155725 ENSGT00910000147939 ENSGT00940000158991 ENSGT00940000156987 ENSGT00940000155676.r ENSGT00940000154317.a.b ENSGT00940000162991 Macaca ANCESTRAL SPECIES 9 ENSGT00950000182962.b.b ENSGT00530000063583.b ENSGT00390000002881 ENSGT00390000018635.c ENSGT00940000160723 ENSGT00940000158213 ENSGT00940000162994.e.a.c ENSGT00390000011776.cb ENSGT00390000000510.c ENSGT00390000007279.c.a ENSGT00940000155416.a.b.e.b ENSGT00940000157966 ENSGT00530000063320.B ENSGT00940000156226 ENSGT00940000161944 ENSGT01100000263504.a.b.a.b.a.b.ob ##35 ENSGT00940000155462 ENSGT00940000160119 ENSGT00940000155723.a ENSGT00390000017996.b ENSGT00910000147633 ENSGT00940000159970 ENSGT00900000143015 ENSGT00940000155725 ENSGT00940000158991 ENSGT00940000156987 ENSGT00940000155676.r ENSGT00940000154317.a.b ENSGT00940000162991 ENSGT00940000162821 ENSGT00390000006522.b Macaca_a ANCESTRAL SPECIES 9 ENSGT00950000182962.b.b ENSGT00530000063583.b ENSGT00390000002881 ENSGT00390000018635.c ENSGT00940000160723 ENSGT00940000158213 ENSGT00940000162994.e.a.c ENSGT00390000011776.cb ENSGT01100000263539.a.a.b.b.b.b.a.b.a.b ENSGT00390000000510.c ENSGT00390000007279.c.a ENSGT00940000157966 ENSGT00530000063320.B ENSGT00940000156226 ENSGT00940000161944 ENSGT01100000263504.a.b.a.b.a.b.ob ##35 ENSGT00940000155462 ENSGT00940000160119 ENSGT00940000155723.a ENSGT00390000017996.b ENSGT00940000159970 ENSGT00960000190362.E.b ENSGT00950000183105.A.m.a.r.j.a ENSGT00390000012138.a.a.j.b ENSGT00900000143015 ENSGT00940000155725 ENSGT00940000158991 ENSGT00940000156987 ENSGT00940000155676.r ENSGT00940000154317.a.b ENSGT00940000162991 Crab-eating macaque MODERN SPECIES 14 ENSMFAG00000002281 SLC22A16 (ENSMFAG00000031557) ENSMFAG00000058474 CDK19 (ENSMFAG00000042294) ENSMFAG00000047745 AMD1 (ENSMFAG00000031017) ENSMFAG00000052069 GTF3C6 (ENSMFAG00000001340) RPF2 (ENSMFAG00000053628) SLC16A10 (ENSMFAG00000037297) MFSD4B (ENSMFAG00000041427) REV3L (ENSMFAG00000040266) ENSMFAG00000059257 ENSMFAG00000054213 TRAF3IP2 (ENSMFAG00000002710) ENSMFAG00000048845 ##35 FYN (ENSMFAG00000000074) CCN6 (ENSMFAG00000038144) TUBE1 (ENSMFAG00000043188) FAM229B (ENSMFAG00000045226) ENSMFAG00000056511 LAMA4 (ENSMFAG00000037073) ENSMFAG00000064818 ENSMFAG00000031632 ENSMFAG00000018794 ENSMFAG00000052224 HDAC2 (ENSMFAG00000040542) HS3ST5 (ENSMFAG00000061930) ENSMFAG00000063529 ENSMFAG00000047737 FRK (ENSMFAG00000000665) Cercopithecinae_b ANCESTRAL SPECIES 17 ENSGT00950000182962.b.b ENSGT00530000063583.b ENSGT00390000002881 ENSGT00390000018635.c ENSGT00940000160723 ENSGT00940000158213 ENSGT00940000162994.e.a.c ENSGT00390000018509.a.n ENSGT00390000000510 ENSGT00390000007279.c.a ENSGT00940000155416.a.b.e.b ENSGT00940000157966 ENSGT00530000063320.B ENSGT00940000156226 ENSGT00940000161944 ENSGT01100000263504.a.b.a.b.a.b.ob ##35 ENSGT00940000155462 ENSGT00940000160119 ENSGT00940000155723.a ENSGT00390000017996.b ENSGT00910000147633 ENSGT00940000159970 ENSGT00940000154281.m.b.a.a.a.a ENSGT00730000111419 ENSGT00940000155725 ENSGT00910000147939 ENSGT00940000158991 ENSGT00940000156987 ENSGT00940000154317.a.b ENSGT00940000155676.r ENSGT00940000162991 Olive baboon DUPLICATION Olive baboon MODERN SPECIES 16 GPR6 (ENSPANG00000008203) WASF1 (ENSPANG00000007144) CDC40 (ENSPANG00000023241) METTL24 (ENSPANG00000000582) DDO (ENSPANG00000006524) SLC22A16 (ENSPANG00000016951) ENSPANG00000043778 ENSPANG00000044122 CDK19 (ENSPANG00000006920) AMD1 (ENSPANG00000006182) RPF2 (ENSPANG00000018834) SLC16A10 (ENSPANG00000005013) MFSD4B (ENSPANG00000006921) ENSPANG00000041335 REV3L (ENSPANG00000020083) ENSPANG00000046707 ##35 TRAF3IP2 (ENSPANG00000022012) FYN (ENSPANG00000003402) CCN6 (ENSPANG00000021139) TUBE1 (ENSPANG00000005681) FAM229B (ENSPANG00000046703) LAMA4 (ENSPANG00000012999) ENSPANG00000032439 ENSPANG00000040680 ENSPANG00000049180 MARCKS (ENSPANG00000023060) HDAC2 (ENSPANG00000004969) HS3ST5 (ENSPANG00000020863) ENSPANG00000039146 ENSPANG00000045691 FRK (ENSPANG00000015735) Olive baboon MODERN SPECIES 792 ATP1B4 (ENSPANG00000011672) LAMP2 (ENSPANG00000000964) ENSPANG00000041141 CUL4B (ENSPANG00000000965) MCTS1 (ENSPANG00000011471) C1GALT1C1 (ENSPANG00000023999) ENSPANG00000050037 ENSPANG00000050218 ENSPANG00000046726 ENSPANG00000049871 ENSPANG00000044422 ENSPANG00000043773 GRIA3 (ENSPANG00000023324) ENSPANG00000037614 THOC2 (ENSPANG00000004038) ENSPANG00000041096 ##35 ENSPANG00000050061 ENSPANG00000044057 STAG2 (ENSPANG00000013929) ENSPANG00000042118 ENSPANG00000044681 XIAP (ENSPANG00000019077) ENSPANG00000038162 ENSPANG00000045930 TEX13D (ENSPANG00000037467) SH2D1A (ENSPANG00000001186) TENM1 (ENSPANG00000002300) TEX13C (ENSPANG00000029900) ENSPANG00000048415 ENSPANG00000038760 DCAF12L1 (ENSPANG00000015250) Vervet Monkey DUPLICATION Vervet Monkey MODERN SPECIES 192 ENSCSAG00000019472 AKAP14 (ENSCSAG00000018346) NKAP (ENSCSAG00000018345) RHOXF1 (ENSCSAG00000018344) ENSCSAG00000018343 ZBTB33 (ENSCSAG00000019473) TMEM255A (ENSCSAG00000018341) ATP1B4 (ENSCSAG00000018340) LAMP2 (ENSCSAG00000018339) CUL4B (ENSCSAG00000018338) MCTS1 (ENSCSAG00000018337) C1GALT1C1 (ENSCSAG00000019474) ENSCSAG00000019475 GRIA3 (ENSCSAG00000018334) THOC2 (ENSCSAG00000018332) ENSCSAG00000019476 ##35 ENSCSAG00000018331 STAG2 (ENSCSAG00000018330) SH2D1A (ENSCSAG00000018329) TENM1 (ENSCSAG00000018328) ENSCSAG00000018327 ENSCSAG00000019477 PRR32 (ENSCSAG00000018326) Vervet Monkey MODERN SPECIES 28 CEP55 (ENSCSAG00000006295) FFAR4 (ENSCSAG00000006287) RBP4 (ENSCSAG00000006283) PDE6C (ENSCSAG00000006251) FRA10AC1 (ENSCSAG00000006223) LGI1 (ENSCSAG00000006218) SLC35G1 (ENSCSAG00000006214) PLCE1 (ENSCSAG00000006211) NOC3L (ENSCSAG00000006207) TBC1D12 (ENSCSAG00000006197) ENSCSAG00000006183 HELLS (ENSCSAG00000006181) CYP2C9 (ENSCSAG00000006176) ENSCSAG00000018443 CYP2C8 (ENSCSAG00000006171) ENSCSAG00000018444 ##35 PDLIM1 (ENSCSAG00000006169) SORBS1 (ENSCSAG00000006164) ALDH18A1 (ENSCSAG00000006154) TCTN3 (ENSCSAG00000006148) ENTPD1 (ENSCSAG00000006143) ENSCSAG00000006140 ENSCSAG00000006127 ENSCSAG00000006123 CCNJ (ENSCSAG00000006119) ZNF518A (ENSCSAG00000018445) BLNK (ENSCSAG00000006097) DNTT (ENSCSAG00000006057) OPALIN (ENSCSAG00000006053) TM9SF3 (ENSCSAG00000006050) PIK3AP1 (ENSCSAG00000006047) Vervet Monkey MODERN SPECIES 17 CDC73 (ENSCSAG00000013431) KCNT2 (ENSCSAG00000013529) CFH (ENSCSAG00000013551) CFHR4 (ENSCSAG00000013559) CFHR2 (ENSCSAG00000013569) CFHR5 (ENSCSAG00000013575) F13B (ENSCSAG00000013580) ASPM (ENSCSAG00000013591) ZBTB41 (ENSCSAG00000013610) CRB1 (ENSCSAG00000013619) DENND1B (ENSCSAG00000013627) C1orf53 (ENSCSAG00000013637) LHX9 (ENSCSAG00000013642) NEK7 (ENSCSAG00000013647) ATP6V1G3 (ENSCSAG00000013651) ENSCSAG00000013661 ##35 PTPRC (ENSCSAG00000013674) ENSCSAG00000000249 NR5A2 (ENSCSAG00000013702) ZNF281 (ENSCSAG00000000250) KIF14 (ENSCSAG00000013776) DDX59 (ENSCSAG00000013799) CAMSAP2 (ENSCSAG00000013807) GPR25 (ENSCSAG00000000251) INAVA (ENSCSAG00000013813) KIF21B (ENSCSAG00000013828) CACNA1S (ENSCSAG00000013846) ASCL5 (ENSCSAG00000000252) TMEM9 (ENSCSAG00000013860) PKP1 (ENSCSAG00000013888) TNNT2 (ENSCSAG00000013948) Rhinopithecus ANCESTRAL SPECIES ENSGT01100000263504.a.b.a.b.a.b ##35 Golden snub-nosed monkey MODERN SPECIES 3217 DSCC1 (ENSRROG00000038114) TAF2 (ENSRROG00000042488) ENPP2 (ENSRROG00000025107) CCN3 (ENSRROG00000031528) ENSRROG00000042191 ##35 MAL2 (ENSRROG00000045784) COLEC10 (ENSRROG00000022514) Black snub-nosed monkey MODERN SPECIES 64 GNS (ENSRBIG00000027952) RASSF3 (ENSRBIG00000031466) TBK1 (ENSRBIG00000039261) XPOT (ENSRBIG00000041353) C12orf56 (ENSRBIG00000042657) ENSRBIG00000042123 KICS2 (ENSRBIG00000028281) SRGAP1 (ENSRBIG00000035921) ENSRBIG00000023256 ##35 RXYLT1 (ENSRBIG00000039309) Euarchontoglires_A ANCESTRAL SPECIES ENSGT01100000263504.a.b.a.b.a.b ##35 Glires ANCESTRAL SPECIES ENSGT01100000263504.a.b.a.b.a.b ##35 Rodentia DUPLICATION Rodentia DUPLICATION Rodentia ANCESTRAL SPECIES ENSGT01100000263504.a.b.a.b.a.b.sb.a ##35 Rodentia_B ANCESTRAL SPECIES ENSGT01100000263504.a.b.a.b.a.b.sb.a ##35 Myomorpha ANCESTRAL SPECIES ENSGT01100000263504.a.b.a.b.a.b.sb.a ##35 Muroidea ANCESTRAL SPECIES ENSGT01100000263504.a.b.a.b.a.b.sb.a ##35 Muroidea_A ANCESTRAL SPECIES ENSGT01100000263504.a.b.a.b.a.b.sb.a ##35 Cricetidae ANCESTRAL SPECIES ENSGT01100000263504.a.b.a.b.a.b.sb.a ##35 Cricetidae_B ANCESTRAL SPECIES ENSGT01100000263504.a.b.a.b.a.b.sb.a ##35 Northern American deer mouse MODERN SPECIES 18 Ofcc1 (ENSPEMG00000020547) Slc35b3 (ENSPEMG00000001883) Eef1e1 (ENSPEMG00000018182) Bloc1s5 (ENSPEMG00000030914) Txndc5 (ENSPEMG00000009019) Bmp6 (ENSPEMG00000014388) Snrnp48 (ENSPEMG00000008872) Dsp (ENSPEMG00000014596) Riok1 (ENSPEMG00000017844) Cage1 (ENSPEMG00000008259) Ssr1 (ENSPEMG00000010303) Rreb1 (ENSPEMG00000014153) Ly86 (ENSPEMG00000008759) F13a1 (ENSPEMG00000016989) Nrn1 (ENSPEMG00000010532) ENSPEMG00000027489 ##35 ENSPEMG00000029972 ENSPEMG00000028708 Fars2 (ENSPEMG00000017477) Lyrm4 (ENSPEMG00000030913) Ppp1r3g (ENSPEMG00000014441) Rpp40 (ENSPEMG00000020809) Cdyl (ENSPEMG00000022690) ENSPEMG00000021110 ENSPEMG00000021161 Tex56 (ENSPEMG00000020583) Fam217a (ENSPEMG00000020354) Prpf4b (ENSPEMG00000020358) ENSPEMG00000031049 Fam50b (ENSPEMG00000024324) Pxdc1 (ENSPEMG00000021893) Cricetinae ANCESTRAL SPECIES ENSGT01100000263504.a.b.a.b.a.b.sb.a ##35 Chinese hamster chok1gshd MODERN SPECIES 1 Hecw2 (ENSCGRG00001016301) Ccdc150 (ENSCGRG00001015128) Gtf3c3 (ENSCGRG00001014543) Pgap1 (ENSCGRG00001016707) Ankrd44 (ENSCGRG00001018584) Sf3b1 (ENSCGRG00001016990) Coq10b (ENSCGRG00001015271) HSPD1 (ENSCGRG00001021126) ENSCGRG00001015345 Mob4 (ENSCGRG00001024203) Rftn2 (ENSCGRG00001017788) Mars2 (ENSCGRG00001010364) Boll (ENSCGRG00001020168) ENSCGRG00001009537 Plcl1 (ENSCGRG00001015676) ENSCGRG00001010393 ##35 Hsfy2 (ENSCGRG00001009926) Satb2 (ENSCGRG00001019669) 1700066M21Rik (ENSCGRG00001016585) Tyw5 (ENSCGRG00001015297) Maip1 (ENSCGRG00001018639) Spats2l (ENSCGRG00001019123) Kctd18 (ENSCGRG00001016666) ENSCGRG00001016045 Aox1 (ENSCGRG00001018485) Aox3 (ENSCGRG00001016559) Aox4 (ENSCGRG00001016089) Aox2 (ENSCGRG00001017735) Bzw1 (ENSCGRG00001017178) Clk1 (ENSCGRG00001018410) Ppil3 (ENSCGRG00001021470) Rodentia_A ANCESTRAL SPECIES ENSGT01100000263504.a.b.a.b.a.b.sb.a ##35 Hystricomorpha ANCESTRAL SPECIES ENSGT01100000263504.a.b.a.b.a.b.sb.a ##35 Hystricomorpha_a ANCESTRAL SPECIES ENSGT01100000263504.a.b.a.b.a.b.sb.a ##35 Hystricomorpha_b ANCESTRAL SPECIES ENSGT01100000263504.a.b.a.b.a.b.sb.a ##35 Degu MODERN SPECIES 197 TTC4 (ENSODEG00000012043) MROH7 (ENSODEG00000011770) FAM151A (ENSODEG00000011460) ACOT11 (ENSODEG00000011967) ENSODEG00000020148 SSBP3 (ENSODEG00000011890) MRPL37 (ENSODEG00000013096) CYB5RL (ENSODEG00000013330) CDCP2 (ENSODEG00000012753) TCEANC2 (ENSODEG00000013526) ENSODEG00000013663 LDLRAD1 (ENSODEG00000011774) LRRC42 (ENSODEG00000012283) IFT25 (ENSODEG00000013069) DIO1 (ENSODEG00000012387) ENSODEG00000019895 ##35 L3MBTL2 (ENSODEG00000013665) CHADL (ENSODEG00000012116) RANGAP1 (ENSODEG00000014583) ZC3H7B (ENSODEG00000012411) TEF (ENSODEG00000014126) TOB2 (ENSODEG00000020030) ENSODEG00000013125 ACO2 (ENSODEG00000012550) ENSODEG00000013641 CSDC2 (ENSODEG00000015733) PMM1 (ENSODEG00000012155) DESI1 (ENSODEG00000012652) XRCC6 (ENSODEG00000015847) SNU13 (ENSODEG00000015632) ENSODEG00000012993 Naked mole-rat female DUPLICATION Naked mole-rat female MODERN SPECIES 27 ENSHGLG00000019806 ENSHGLG00000034553 ENSHGLG00000046052 ENSHGLG00000000901 ENSHGLG00000001024 ENSHGLG00000019846 ENSHGLG00000000768 ENSHGLG00000000796 ENSHGLG00000041678 WDFY3 (ENSHGLG00000002966) CDS1 (ENSHGLG00000049384) ENSHGLG00000004589 ENSHGLG00000004204 ENSHGLG00000035706 ENSHGLG00000037327 ENSHGLG00000045281 ##35 ENSHGLG00000043322 Gpat3 (ENSHGLG00000003421) ENSHGLG00000037131 ENSHGLG00000036220 ENSHGLG00000036989 HELQ (ENSHGLG00000019137) HPSE (ENSHGLG00000018930) ENSHGLG00000016197 ENSHGLG00000049647 PLAC8 (ENSHGLG00000016121) COPS4 (ENSHGLG00000044616) ENSHGLG00000013973 SHCBP1 (ENSHGLG00000049778) ENSHGLG00000001863 ORC6 (ENSHGLG00000040263) Naked mole-rat female MODERN SPECIES 25 ANK1 (ENSHGLG00000003086) KAT6A (ENSHGLG00000003976) ENSHGLG00000046201 AP3M2 (ENSHGLG00000003868) PLAT (ENSHGLG00000003529) IKBKB (ENSHGLG00000002996) Polb (ENSHGLG00000033147) DKK4 (ENSHGLG00000018668) VDAC3 (ENSHGLG00000018734) ENSHGLG00000034139 SLC20A2 (ENSHGLG00000019122) ENSHGLG00000035600 ENSHGLG00000020593 CHRNB3 (ENSHGLG00000017680) ENSHGLG00000003713 ENSHGLG00000020007 ##35 ENSHGLG00000040189 ENSHGLG00000003116 ENSHGLG00000040563 ENSHGLG00000037811 THAP1 (ENSHGLG00000036606) ENSHGLG00000038726 FNTA (ENSHGLG00000000048) SGK196 (ENSHGLG00000000861) ENSHGLG00000006947 ENSHGLG00000040922 ENSHGLG00000005486 SNCAIP (ENSHGLG00000004400) ENSHGLG00000004284 SNX2 (ENSHGLG00000004121) SNX24 (ENSHGLG00000044370) Rodentia ANCESTRAL SPECIES ENSGT01100000263504.a.b.a.b.a.b.sb.b ##35 Rodentia_A ANCESTRAL SPECIES ENSGT01100000263504.a.b.a.b.a.b.sb.b ##35 Hystricomorpha ANCESTRAL SPECIES ENSGT01100000263504.a.b.a.b.a.b.sb.b ##35 Hystricomorpha_a ANCESTRAL SPECIES ENSGT01100000263504.a.b.a.b.a.b.sb.b ##35 Hystricomorpha_b ANCESTRAL SPECIES ENSGT01100000263504.a.b.a.b.a.b.sb.b ##35 Degu MODERN SPECIES 92 ALG11 (ENSODEG00000006330) ATP7B (ENSODEG00000007053) CCDC70 (ENSODEG00000019333) ENSODEG00000019356 WDFY2 (ENSODEG00000009682) INTS6 (ENSODEG00000009210) SERPINE3 (ENSODEG00000006232) FAM124A (ENSODEG00000006565) ENSODEG00000006175 C13orf42 (ENSODEG00000005880) ENSODEG00000007411 ENSODEG00000006793 DLEU7 (ENSODEG00000006775) ENSODEG00000006650 ##35 ENSODEG00000006325 ENSODEG00000019247 TRIM13 (ENSODEG00000005624) ENSODEG00000006101 ENSODEG00000005796 ENSODEG00000006427 EBPL (ENSODEG00000006022) RCBTB1 (ENSODEG00000009239) SETDB2 (ENSODEG00000005653) CAB39L (ENSODEG00000005405) CDADC1 (ENSODEG00000005355) MLNR (ENSODEG00000005947) ENSODEG00000019344 FNDC3A (ENSODEG00000005882) ENSODEG00000005498 Rodentia ANCESTRAL SPECIES ENSGT01100000263504.a.b.a.b.a.b.tb ##35 Rodentia_A ANCESTRAL SPECIES ENSGT01100000263504.a.b.a.b.a.b.tb ##35 Sciuridae ANCESTRAL SPECIES ENSGT01100000263504.a.b.a.b.a.b.tb ##35 Eurasian red squirrel DUPLICATION Eurasian red squirrel MODERN SPECIES 17 CHEK2 (ENSSVLG00005013622) HSCB (ENSSVLG00005013889) ENSSVLG00005013977 XBP1 (ENSSVLG00005014110) ENSSVLG00005014358 ZNRF3 (ENSSVLG00005014418) C22orf31 (ENSSVLG00005014531) KREMEN1 (ENSSVLG00005014585) EMID1 (ENSSVLG00005014741) RHBDD3 (ENSSVLG00005015229) ENSSVLG00005015564 GAS2L1 (ENSSVLG00005016901) RASL10A (ENSSVLG00005016957) AP1B1 (ENSSVLG00005017064) ENSSVLG00005017183 ENSSVLG00005017256 ##35 THOC5 (ENSSVLG00005017316) NIPSNAP1 (ENSSVLG00005017412) NF2 (ENSSVLG00005017565) CABP7 (ENSSVLG00005018067) ZMAT5 (ENSSVLG00005018150) UQCR10 (ENSSVLG00005018199) ASCC2 (ENSSVLG00005018252) MTMR3 (ENSSVLG00005018401) ENSSVLG00005018603 ENSSVLG00005018631 ENSSVLG00005018783 WSCD2 (ENSSVLG00005018822) CMKLR1 (ENSSVLG00005018877) FICD (ENSSVLG00005018898) SART3 (ENSSVLG00005018955) Eurasian red squirrel MODERN SPECIES 6 ENSSVLG00005015236 ENSSVLG00005015253 OSTF1 (ENSSVLG00005015295) NMRK1 (ENSSVLG00005015348) CARNMT1 (ENSSVLG00005015445) C9orf40 (ENSSVLG00005015497) TRPM6 (ENSSVLG00005015687) RORB (ENSSVLG00005016809) ANXA1 (ENSSVLG00005017085) ENSSVLG00005017133 TMC1 (ENSSVLG00005017203) ENSSVLG00005017634 ZFAND5 (ENSSVLG00005017720) ENSSVLG00005017771 GDA (ENSSVLG00005017869) ENSSVLG00005018403 ##35 ENSSVLG00005018452 C9orf85 (ENSSVLG00005018493) ABHD17B (ENSSVLG00005018539) CEMIP2 (ENSSVLG00005018615) TRPM3 (ENSSVLG00005019886) KLF9 (ENSSVLG00005021773) SMC5 (ENSSVLG00005021802) MAMDC2 (ENSSVLG00005021856) CFAP95 (ENSSVLG00005021956) PTAR1 (ENSSVLG00005022066) APBA1 (ENSSVLG00005022160) ENTREP1 (ENSSVLG00005022461) TJP2 (ENSSVLG00005022528) ENSSVLG00005022798 PIP5K1B (ENSSVLG00005022876) Hystricomorpha ANCESTRAL SPECIES ENSGT01100000263504.a.b.a.b.a.b.tb ##35 Naked mole-rat female DUPLICATION Naked mole-rat female MODERN SPECIES 24 HEBP1 (ENSHGLG00000010439) ENSHGLG00000035694 FAM234B (ENSHGLG00000007444) GSG1 (ENSHGLG00000005919) EMP1 (ENSHGLG00000033633) GRIN2B (ENSHGLG00000007400) ATF7IP (ENSHGLG00000005472) PLBD1 (ENSHGLG00000017510) GUCY2C (ENSHGLG00000008125) HIST1H4I (ENSHGLG00000040933) H2AJ (ENSHGLG00000038135) WBP11 (ENSHGLG00000015110) SMCO3 (ENSHGLG00000016997) ART4 (ENSHGLG00000012046) MGP (ENSHGLG00000010697) ENSHGLG00000033085 ##35 ERP27 (ENSHGLG00000006570) ARHGDIB (ENSHGLG00000017937) PDE6H (ENSHGLG00000016447) RERG (ENSHGLG00000043638) PTPRO (ENSHGLG00000005809) EPS8 (ENSHGLG00000014063) ENSHGLG00000018779 ENSHGLG00000016785 DERA (ENSHGLG00000008563) SLC15A5 (ENSHGLG00000018627) MGST1 (ENSHGLG00000047521) LMO3 (ENSHGLG00000042625) RERGL (ENSHGLG00000010746) PIK3C2G (ENSHGLG00000006770) CAPZA3 (ENSHGLG00000020130) Naked mole-rat female MODERN SPECIES 10 GPSM2 (ENSHGLG00000008243) CLCC1 (ENSHGLG00000012601) ENSHGLG00000047611 ENSHGLG00000032871 WDR47 (ENSHGLG00000016168) TAF13 (ENSHGLG00000044536) TMEM167B (ENSHGLG00000049341) ENSHGLG00000042516 ELAPOR1 (ENSHGLG00000006684) ENSHGLG00000032171 SARS (ENSHGLG00000004639) CELSR2 (ENSHGLG00000009055) PSRC1 (ENSHGLG00000047908) MYBPHL (ENSHGLG00000007407) ENSHGLG00000047296 ENSHGLG00000021182 ##35 SORT1 (ENSHGLG00000015001) PSMA5 (ENSHGLG00000044451) SYPL2 (ENSHGLG00000010069) ATXN7L2 (ENSHGLG00000005562) CYB561D1 (ENSHGLG00000035267) AMIGO1 (ENSHGLG00000032192) GPR61 (ENSHGLG00000009351) ENSHGLG00000011088 GNAT2 (ENSHGLG00000004723) AMPD2 (ENSHGLG00000006180) ENSHGLG00000034487 ENSHGLG00000042317 ENSHGLG00000006348 ENSHGLG00000049395 ENSHGLG00000020668 Naked mole-rat female MODERN SPECIES 23 ENSHGLG00000033989 ENSHGLG00000033449 ENSHGLG00000040233 ENSHGLG00000031991 ENSHGLG00000031868 ENSHGLG00000047861 ENSHGLG00000045546 ENSHGLG00000041763 ENSHGLG00000041916 ENSHGLG00000035401 ENSHGLG00000035379 ENSHGLG00000046275 ENSHGLG00000039820 ENSHGLG00000045661 IGKC (ENSHGLG00000035237) ENSHGLG00000035924 ##35 RPIA (ENSHGLG00000033904) EIF2AK3 (ENSHGLG00000014965) ENSHGLG00000005434 ENSHGLG00000006125 ENSHGLG00000007187 ENSHGLG00000010289 ENSHGLG00000050979 FABP1 (ENSHGLG00000050149) SMYD1 (ENSHGLG00000050629) ENSHGLG00000042877 ENSHGLG00000037617 ENSHGLG00000038505 ENSHGLG00000004771 ENSHGLG00000048608 ENSHGLG00000033472 Naked mole-rat female MODERN SPECIES 3 HEMGN (ENSHGLG00000002822) ENSHGLG00000049665 ANP32B (ENSHGLG00000046539) NANS (ENSHGLG00000002503) TRIM14 (ENSHGLG00000003771) CORO2A (ENSHGLG00000043978) TBC1D2 (ENSHGLG00000002200) GABBR2 (ENSHGLG00000003518) ANKS6 (ENSHGLG00000003003) GALNT12 (ENSHGLG00000002782) COL15A1 (ENSHGLG00000002025) TGFBR1 (ENSHGLG00000002925) ALG2 (ENSHGLG00000002815) SEC61B (ENSHGLG00000045366) ENSHGLG00000037562 ENSHGLG00000020212 ##35 NR4A3 (ENSHGLG00000047547) STX17 (ENSHGLG00000002172) ERP44 (ENSHGLG00000008208) ENSHGLG00000032583 INVS (ENSHGLG00000005116) TEX10 (ENSHGLG00000004561) MSANTD3 (ENSHGLG00000004426) TMEFF1 (ENSHGLG00000003019) MURC (ENSHGLG00000035685) PLPPR1 (ENSHGLG00000008477) ENSHGLG00000037623 BAAT (ENSHGLG00000006846) ENSHGLG00000042541 MRPL50 (ENSHGLG00000004483) ZNF189 (ENSHGLG00000011643) Rodentia_B ANCESTRAL SPECIES 45 ENSGT00390000002210.d #16 ENSGT00940000159576 #17 ENSGT00950000183044.a.a.a.c #19 ENSGT00390000010056 #20 ENSGT00530000063402.b #21 ENSGT01100000263504.a.b.a.b.a.b.tb ##35 ENSGT00530000063651.a #23 ENSGT00940000162190 #24 ENSGT00390000003188 #25 ENSGT00940000156058 #26 ENSGT00390000008003 #27 ENSGT00940000156764.a #28 ENSGT00940000157923 #29 ENSGT00940000156810 #30 ENSGT01030000234517.H.b #31 ENSGT00390000018900 #32 ENSGT00940000163104 #33 ENSGT00390000004799 #34 ENSGT00390000005861 ENSGT00950000183142.a.b.a.b #36 ENSGT00940000156766 #37 Kangaroo rat MODERN SPECIES 322 ENSDORG00000009511 ENSDORG00000024387 ENSDORG00000027513 ENSDORG00000028332 Lrig3 (ENSDORG00000010362) ENSDORG00000028445 Slc16a7 (ENSDORG00000012107) ENSDORG00000025562 ENSDORG00000026705 Tafa2 (ENSDORG00000025792) Usp15 (ENSDORG00000004368) Mon2 (ENSDORG00000000894) Ppm1h (ENSDORG00000007916) Avpr1a (ENSDORG00000026784) ENSDORG00000027389 ENSDORG00000024673 ##35 Rxylt1 (ENSDORG00000006729) Srgap1 (ENSDORG00000006730) Kics2 (ENSDORG00000027543) D930020B18Rik (ENSDORG00000002715) Xpot (ENSDORG00000000259) Tbk1 (ENSDORG00000013423) Rassf3 (ENSDORG00000004445) Gns (ENSDORG00000015245) Tbc1d30 (ENSDORG00000003244) Wif1 (ENSDORG00000006658) Lemd3 (ENSDORG00000023349) Msrb3 (ENSDORG00000009037) Hmga2 (ENSDORG00000024316) Llph (ENSDORG00000027068) Tmbim4 (ENSDORG00000014156) Myomorpha ANCESTRAL SPECIES 16 ENSGT00390000002210.d #16 ENSGT00940000159576 #17 ENSGT00950000183044.a.a.a.c #19 ENSGT00390000010056 #20 ENSGT00530000063402.b #21 ENSGT01100000263504.a.b.a.b.a.b.tb ##35 ENSGT00530000063651.a #23 ENSGT00940000162190 #24 ENSGT00390000003188 #25 ENSGT00940000156058 #26 ENSGT00390000008003 #27 ENSGT00940000156764.a #28 ENSGT00940000157923 #29 ENSGT00940000156810 #30 ENSGT01030000234517.H.b #31 ENSGT00390000018900 #32 ENSGT00940000163104 #33 ENSGT00390000004799 #34 ENSGT00390000005861 ENSGT00950000183142.a.b.a.b #36 ENSGT00940000156766 #37 Muroidea ANCESTRAL SPECIES 9 ENSGT00390000002970 ENSGT00390000013448.a.a ENSGT00390000018505.b #15 ENSGT00940000157376 #13 ENSGT00390000000417.a.a.b.a.b #11 ENSGT00940000160505 #9 ENSGT00950000182834.A.a.b.c #8 ENSGT00940000153634.b ENSGT00950000182834.B ##8 ENSGT00570000079239 ENSGT00390000002210.d #16 ENSGT00940000159576 #17 ENSGT00950000183044.a.a.a.c #19 ENSGT00390000010056 #20 ENSGT00530000063402.b #21 ENSGT01100000263504.a.b.a.b.a.b.tb ##35 ENSGT00530000063651.a #23 ENSGT00940000162190 #24 ENSGT00390000003188 #25 ENSGT00940000156058 #26 ENSGT00390000008003 #27 ENSGT00940000156764.a #28 ENSGT00940000157923 #29 ENSGT00940000156810 #30 ENSGT01030000234517.H.b #31 ENSGT00390000018900 #32 ENSGT00940000163104 #33 ENSGT00390000004799 #34 ENSGT00390000005861 ENSGT00950000183142.a.b.a.b #36 ENSGT00940000156766 #37 Upper Galilee mountains blind mole rat MODERN SPECIES 1795 ENSNGAG00000007235 #16 ENSNGAG00000013471 #16 Tmem63a (ENSNGAG00000010999) #17 ENSNGAG00000007205 #20 Pycr2 (ENSNGAG00000004193) #19 ENSNGAG00000023800 #20 ENSNGAG00000006685 Sde2 (ENSNGAG00000022889) #21 ENSNGAG00000008728 ##35 Acbd3 (ENSNGAG00000019285) #23 Mixl1 (ENSNGAG00000018300) #24 Lin9 (ENSNGAG00000010078) #25 Parp1 (ENSNGAG00000003885) #26 Stum (ENSNGAG00000007799) #27 Itpkb (ENSNGAG00000006387) #28 ENSNGAG00000004558 Psen2 (ENSNGAG00000023668) #29 Coq8a (ENSNGAG00000022006) #30 ENSNGAG00000015462 Cdc42bpa (ENSNGAG00000016580) #31 Muroidea_A ANCESTRAL SPECIES ENSGT01100000263504.a.b.a.b.a.b.tb ##35 Cricetidae ANCESTRAL SPECIES ENSGT01100000263504.a.b.a.b.a.b.tb ##35 Cricetidae_B ANCESTRAL SPECIES ENSGT01100000263504.a.b.a.b.a.b.tb ##35 Northern American deer mouse DUPLICATION Northern American deer mouse MODERN SPECIES 22 Tmem253 (ENSPEMG00000023613) Zfp219 (ENSPEMG00000014102) Arhgef40 (ENSPEMG00000024242) Rnase13 (ENSPEMG00000006492) Tppp2 (ENSPEMG00000014496) Ndrg2 (ENSPEMG00000016941) Slc39a2 (ENSPEMG00000001593) Mettl17 (ENSPEMG00000022743) ENSPEMG00000023630 Rnase1 (ENSPEMG00000014451) Rnase6 (ENSPEMG00000031196) ENSPEMG00000014380 ENSPEMG00000029059 ENSPEMG00000027124 ##35 ENSPEMG00000025799 ENSPEMG00000027493 ##35 ENSPEMG00000030222 ENSPEMG00000028391 ENSPEMG00000027577 ENSPEMG00000026364 Or6s1 (ENSPEMG00000014845) Rnase12 (ENSPEMG00000017671) ENSPEMG00000027205 Rnase9 (ENSPEMG00000024580) ENSPEMG00000009458 Rnase10 (ENSPEMG00000006846) ENSPEMG00000007850 Pip4p1 (ENSPEMG00000007503) Apex1 (ENSPEMG00000019097) Osgep (ENSPEMG00000023499) Klhl33 (ENSPEMG00000007067) Northern American deer mouse MODERN SPECIES 18 Atp2c2 (ENSPEMG00000014405) Wfdc1 (ENSPEMG00000009882) Kcng4 (ENSPEMG00000027802) Adad2 (ENSPEMG00000004734) Taf1c (ENSPEMG00000014044) Dnaaf1 (ENSPEMG00000000781) Hsdl1 (ENSPEMG00000013927) Mbtps1 (ENSPEMG00000016147) Slc38a8 (ENSPEMG00000024033) Necab2 (ENSPEMG00000019626) Osgin1 (ENSPEMG00000020010) Mlycd (ENSPEMG00000019846) ENSPEMG00000030115 Cdh13 (ENSPEMG00000019421) Mphosph6 (ENSPEMG00000019756) ENSPEMG00000031107 ##35 Hsd17b2 (ENSPEMG00000016574) Sdr42e1 (ENSPEMG00000029375) Plcg2 (ENSPEMG00000018570) Cmip (ENSPEMG00000019741) Gan (ENSPEMG00000020147) Bco1 (ENSPEMG00000020066) Pkd1l2 (ENSPEMG00000019583) Gcsh (ENSPEMG00000019328) 1700030J22Rik (ENSPEMG00000014171) ENSPEMG00000011494 Atmin (ENSPEMG00000019534) Cenpn (ENSPEMG00000002034) ENSPEMG00000020157 Cdyl2 (ENSPEMG00000019625) Dynlrb2 (ENSPEMG00000019948) Northern American deer mouse MODERN SPECIES 18 Edn1 (ENSPEMG00000026888) Phactr1 (ENSPEMG00000007922) Tbc1d7 (ENSPEMG00000020296) Gfod1 (ENSPEMG00000025051) Sirt5 (ENSPEMG00000006919) Nol7 (ENSPEMG00000013753) Ranbp9 (ENSPEMG00000010137) Mcur1 (ENSPEMG00000028181) Rnf182 (ENSPEMG00000014628) Cd83 (ENSPEMG00000017094) Jarid2 (ENSPEMG00000018289) Dtnbp1 (ENSPEMG00000010033) Mylip (ENSPEMG00000017674) Gmpr (ENSPEMG00000009461) Atxn1 (ENSPEMG00000014930) ENSPEMG00000024939 ##35 Stmnd1 (ENSPEMG00000018528) Rbm24 (ENSPEMG00000028542) Cap2 (ENSPEMG00000016116) Nup153 (ENSPEMG00000020772) Kif13a (ENSPEMG00000021156) Nhlrc1 (ENSPEMG00000014363) ENSPEMG00000031330 Tpmt (ENSPEMG00000013719) Kdm1b (ENSPEMG00000000253) ENSPEMG00000011094 Rnf144b (ENSPEMG00000026855) Id4 (ENSPEMG00000026044) Zfp169 (ENSPEMG00000000674) Ptpdc1 (ENSPEMG00000013276) ENSPEMG00000031327 Northern American deer mouse MODERN SPECIES 22 Hnrnpc (ENSPEMG00000017899) Or5au1 (ENSPEMG00000026100) Tmem253 (ENSPEMG00000023613) Zfp219 (ENSPEMG00000014102) Arhgef40 (ENSPEMG00000024242) Rnase13 (ENSPEMG00000006492) Tppp2 (ENSPEMG00000014496) Ndrg2 (ENSPEMG00000016941) Slc39a2 (ENSPEMG00000001593) Mettl17 (ENSPEMG00000022743) ENSPEMG00000023630 Rnase1 (ENSPEMG00000014451) Rnase6 (ENSPEMG00000031196) ENSPEMG00000014380 ENSPEMG00000029059 ENSPEMG00000027124 ##35 ENSPEMG00000025799 ENSPEMG00000027493 ##35 ENSPEMG00000030222 ENSPEMG00000028391 ENSPEMG00000027577 ENSPEMG00000026364 Or6s1 (ENSPEMG00000014845) Rnase12 (ENSPEMG00000017671) ENSPEMG00000027205 Rnase9 (ENSPEMG00000024580) ENSPEMG00000009458 Rnase10 (ENSPEMG00000006846) ENSPEMG00000007850 Pip4p1 (ENSPEMG00000007503) Apex1 (ENSPEMG00000019097) Cricetinae ANCESTRAL SPECIES ENSGT01100000263504.a.b.a.b.a.b.tb ##35 Chinese hamster chok1gshd DUPLICATION Chinese hamster chok1gshd MODERN SPECIES 111 Manea (ENSCGRG00001013459) ENSCGRG00001010511 ENSCGRG00001009500 Epha7 (ENSCGRG00001024038) Map3k7 (ENSCGRG00001006542) Bach2 (ENSCGRG00001022819) Gja10 (ENSCGRG00001006501) ENSCGRG00001015514 Mdn1 (ENSCGRG00001013549) Lyrm2 (ENSCGRG00001008264) Ankrd6 (ENSCGRG00001020575) Rragd (ENSCGRG00001002084) Ube2j1 (ENSCGRG00001011645) Gabrr2 (ENSCGRG00001000639) Gabrr1 (ENSCGRG00001023329) ENSCGRG00001007791 ##35 Pm20d2 (ENSCGRG00001020497) Srsf12 (ENSCGRG00001002679) Pnrc1 (ENSCGRG00001003862) ENSCGRG00001023707 ENSCGRG00001021982 Cnr1 (ENSCGRG00001010105) Spaca1 (ENSCGRG00001016168) Akirin2 (ENSCGRG00001013427) Orc3 (ENSCGRG00001023069) Rars2 (ENSCGRG00001021675) SLC35A1 (ENSCGRG00001019920) Cfap206 (ENSCGRG00001002156) ENSCGRG00001014099 Smim8 (ENSCGRG00001012821) ENSCGRG00001006646 Chinese hamster chok1gshd MODERN SPECIES 33 Endov (ENSCGRG00001000788) Rnf213 (ENSCGRG00001011097) Slc26a11 (ENSCGRG00001011926) Sgsh (ENSCGRG00001023288) Card14 (ENSCGRG00001012254) ENSCGRG00001022918 Gaa (ENSCGRG00001017996) Ccdc40 (ENSCGRG00001000517) Tbc1d16 (ENSCGRG00001023861) Cbx4 (ENSCGRG00001019500) Cbx8 (ENSCGRG00001016000) Cbx2 (ENSCGRG00001021218) Enpp7 (ENSCGRG00001024304) Rbfox3 (ENSCGRG00001019476) Engase (ENSCGRG00001020002) ENSCGRG00001011091 ##35 C1qtnf1 (ENSCGRG00001013304) Cant1 (ENSCGRG00001017568) Lgals3bp (ENSCGRG00001017663) Cep295nl (ENSCGRG00001014121) Timp2 (ENSCGRG00001020133) Usp36 (ENSCGRG00001022244) Cyth1 (ENSCGRG00001012660) ENSCGRG00001024575 Dnah17 (ENSCGRG00001007869) PGS1 (ENSCGRG00001019173) Socs3 (ENSCGRG00001002299) Tha1 (ENSCGRG00001015743) Tmem235 (ENSCGRG00001003448) ENSCGRG00001024015 Afmid (ENSCGRG00001014003) Murinae ANCESTRAL SPECIES 11 ENSGT00390000000417.a.a.b.a.b #11 ENSGT00940000160505 #9 ENSGT01000000214622.a.a.a ENSGT00950000182834.A.a.b.c #8 ENSGT00940000153634.b ENSGT00950000182834.B ##8 ENSGT00570000079239 ENSGT00390000013448.a.a.j.b ENSGT00390000013448.a.a.j.a ENSGT00390000002210.d #16 ENSGT00940000159576 #17 ENSGT00390000010056.z #20 ENSGT00950000183044.a.a.a.c #19 ENSGT00390000010056.y #20 ENSGT00530000063402.b #21 ENSGT01100000263504.a.b.a.b.a.b.tb ##35 ENSGT00530000063651.a #23 ENSGT00940000162190 #24 ENSGT00390000003188 #25 ENSGT00940000156058 #26 ENSGT00390000008003 #27 ENSGT00940000156764.a #28 ENSGT00940000157923 #29 ENSGT00940000156810 #30 ENSGT01030000234517.H.b #31 ENSGT00390000018900 #32 ENSGT00940000163104 #33 ENSGT00390000004799 #34 ENSGT00390000005861 ENSGT00950000183142.a.b.a.b #36 ENSGT00940000156766 #37 Rat DUPLICATION Rat MODERN SPECIES 6 ENSRNOG00000070489 Samd4a (ENSRNOG00000010489) Rpl39-ps12 (ENSRNOG00000029267) Cgrrf1 (ENSRNOG00000010178) Gmfb (ENSRNOG00000064480) Cnih1 (ENSRNOG00000009811) ##8 Cdkn3 (ENSRNOG00000009785) Bmp4 (ENSRNOG00000009694) Ddhd1 (ENSRNOG00000009481) LOC108353033 (ENSRNOG00000068233) Fermt2 (ENSRNOG00000009102) Gnpnat1 (ENSRNOG00000008641) Styx (ENSRNOG00000007956) Psmc6 (ENSRNOG00000007203) Ero1a (ENSRNOG00000006462) ENSRNOG00000031251 ##35 Gpr137c (ENSRNOG00000026328) Txndc16 (ENSRNOG00000006334) AABR07017250.1 (ENSRNOG00000049099) Ptger2 (ENSRNOG00000050968) ENSRNOG00000065866 AABR07017241.1 (ENSRNOG00000031307) LOC120096940 (ENSRNOG00000065026) LOC498465 (ENSRNOG00000069977) LOC120093162 (ENSRNOG00000062372) LOC120096938 (ENSRNOG00000069510) LOC103693798 (ENSRNOG00000040007) LOC120096939 (ENSRNOG00000064732) LOC120093102 (ENSRNOG00000066964) LOC120093102 (ENSRNOG00000068885) LOC102550211 (ENSRNOG00000062980) Rat MODERN SPECIES 19 Tgfbrap1 (ENSRNOG00000024562) Gpr45 (ENSRNOG00000016446) Arpc5l-ps1 (ENSRNOG00000067388) Mrps9 (ENSRNOG00000016201) Pou3f3 (ENSRNOG00000038909) Tmem182 (ENSRNOG00000028945) Mfsd9 (ENSRNOG00000023129) Slc9a2 (ENSRNOG00000015567) Slc9a4 (ENSRNOG00000015306) Il18rap (ENSRNOG00000054218) Il18r1 (ENSRNOG00000015027) Il1rl1 (ENSRNOG00000014835) AABR07067459.1 (ENSRNOG00000061227) Il1rl2 (ENSRNOG00000014683) Il1r1 (ENSRNOG00000014504) RGD1564447 (ENSRNOG00000032108) ##35 Il1r2 (ENSRNOG00000014378) Map4k4 (ENSRNOG00000014013) ENSRNOG00000068018 Rfx8 (ENSRNOG00000058243) Creg2 (ENSRNOG00000013991) Rnf149 (ENSRNOG00000013946) Cnot11 (ENSRNOG00000023220) Tbc1d8 (ENSRNOG00000013583) Rpl31 (ENSRNOG00000013508) Npas2 (ENSRNOG00000013408) AABR07067441.3 (ENSRNOG00000052328) Pdcl3 (ENSRNOG00000013286) NMS (ENSRNOG00000038979) Chst10 (ENSRNOG00000012815) Lonrf2 (ENSRNOG00000023312) Mus ANCESTRAL SPECIES 5 ENSGT00390000000417.a.a.b.a.b #11 ENSGT00940000160505 #9 ENSGT01000000214622.a.a.a ENSGT00950000182834.A.a.b.c #8 ENSGT00940000153634.b ENSGT00950000182834.B ##8 ENSGT00570000079239 ENSGT00390000013448.a.a.j.b ENSGT00390000013448.a.a.j.a ENSGT00390000002210.d #16 ENSGT00940000159576 #17 ENSGT00390000010056.z #20 ENSGT00950000183044.a.a.a.c #19 ENSGT00390000010056.y #20 ENSGT00530000063402.b #21 ENSGT01100000263504.a.b.a.b.a.b.tb ##35 ENSGT00530000063651.a #23 ENSGT00940000162190 #24 ENSGT00390000003188 #25 ENSGT00940000156058 #26 ENSGT00390000008003 #27 ENSGT00940000156764.a #28 ENSGT00940000157923 #29 ENSGT00940000156810 #30 ENSGT01030000234517.H.b #31 ENSGT00390000018900 #32 ENSGT00940000163104 #33 ENSGT00390000004799 #34 ENSGT00390000005861 ENSGT00950000183142.a.b.a.b #36 ENSGT00940000156766 #37 Shrew mouse MODERN SPECIES 18 Enah (MGP_PahariEiJ_G0028228) #13 Lbr (MGP_PahariEiJ_G0028227) #11 MGP_PahariEiJ_G0028226 #9 Ccdc121rt1 (MGP_PahariEiJ_G0028225) Cnih3 (MGP_PahariEiJ_G0028224) #8 Wdr26 (MGP_PahariEiJ_G0028223) Cnih4 (MGP_PahariEiJ_G0028222) ##8 Nvl (MGP_PahariEiJ_G0028221) 9130409I23Rik (MGP_PahariEiJ_G0028220) MGP_PahariEiJ_G0028219 #16 Tmem63a (MGP_PahariEiJ_G0028218) #17 Pycr2 (MGP_PahariEiJ_G0028217) #19 MGP_PahariEiJ_G0028216 #20 Lefty2 (MGP_PahariEiJ_G0028215) #20 Sde2 (MGP_PahariEiJ_G0028214) #21 MGP_PahariEiJ_G0028213 ##35 Acbd3 (MGP_PahariEiJ_G0028212) #23 Mixl1 (MGP_PahariEiJ_G0028211) #24 Lin9 (MGP_PahariEiJ_G0028210) #25 MGP_PahariEiJ_G0028209 #26 Stum (MGP_PahariEiJ_G0028208) #27 Itpkb (MGP_PahariEiJ_G0028207) #28 Psen2 (MGP_PahariEiJ_G0028206) #29 Coq8a (MGP_PahariEiJ_G0028205) #30 Cdc42bpa (MGP_PahariEiJ_G0028204) #31 MGP_PahariEiJ_G0028203 MGP_PahariEiJ_G0028202 #32 Kif28 (MGP_PahariEiJ_G0028201) #33 Sccpdh (MGP_PahariEiJ_G0028200) #34 Cnst (MGP_PahariEiJ_G0028199) MGP_PahariEiJ_G0028198 #36 Mus_A ANCESTRAL SPECIES 5 ENSGT00940000160505 #9 ENSGT01000000214622.a.a.a ENSGT00950000182834.A.a.b.c #8 ENSGT00940000153634.b ENSGT00950000182834.B ##8 ENSGT00570000079239 ENSGT00390000013448.a.a.j.b ENSGT00390000013448.a.a.j.a ENSGT00390000002210.d #16 ENSGT00940000159576 #17 ENSGT00390000010056.z #20 ENSGT00950000183044.a.a.a.c #19 ENSGT00390000010056.y.a.b #20 ENSGT00390000010056.y.a.a #20 ENSGT00530000063402.b #21 ENSGT01100000263504.a.b.a.b.a.b.tb ##35 ENSGT00530000063651.a #23 ENSGT00940000162190 #24 ENSGT00390000003188 #25 ENSGT00940000156058 #26 ENSGT00390000008003 #27 ENSGT00940000156764.a #28 ENSGT00940000157923 #29 ENSGT00940000156810 #30 ENSGT01030000234517.H.b #31 ENSGT00860000135936 ENSGT00390000018900 #32 ENSGT00940000163104 #33 ENSGT00390000004799 #34 ENSGT00390000005861 ENSGT00950000183142.a.b.a.b #36 Ryukyu mouse MODERN SPECIES Srp9 (MGP_CAROLIEiJ_G0014997) #15 Enah (MGP_CAROLIEiJ_G0014996) #13 Lbr (MGP_CAROLIEiJ_G0014995) #11 MGP_CAROLIEiJ_G0014994 #9 Ccdc121rt1 (MGP_CAROLIEiJ_G0014993) Cnih3 (MGP_CAROLIEiJ_G0014992) #8 MGP_CAROLIEiJ_G0014991 Cnih4 (MGP_CAROLIEiJ_G0014990) ##8 Nvl (MGP_CAROLIEiJ_G0014989) Ephx1 (MGP_CAROLIEiJ_G0014988) #16 Tmem63a (MGP_CAROLIEiJ_G0014987) #17 Pycr2 (MGP_CAROLIEiJ_G0014986) #19 MGP_CAROLIEiJ_G0014985 #20 MGP_CAROLIEiJ_G0014984 #20 Sde2 (MGP_CAROLIEiJ_G0014983) #21 MGP_CAROLIEiJ_G0014982 ##35 Acbd3 (MGP_CAROLIEiJ_G0014981) #23 Mixl1 (MGP_CAROLIEiJ_G0014980) #24 MGP_CAROLIEiJ_G0014979 #25 Parp1 (MGP_CAROLIEiJ_G0014978) #26 Stum (MGP_CAROLIEiJ_G0014977) #27 Itpkb (MGP_CAROLIEiJ_G0014976) #28 Psen2 (MGP_CAROLIEiJ_G0014975) #29 Coq8a (MGP_CAROLIEiJ_G0014974) #30 Cdc42bpa (MGP_CAROLIEiJ_G0014973) #31 MGP_CAROLIEiJ_G0014972 Ahctf1 (MGP_CAROLIEiJ_G0014971) #32 Kif28 (MGP_CAROLIEiJ_G0014970) #33 Sccpdh (MGP_CAROLIEiJ_G0014969) #34 Cnst (MGP_CAROLIEiJ_G0014968) MGP_CAROLIEiJ_G0014967 #36 Mus_B ANCESTRAL SPECIES ENSGT01100000263504.a.b.a.b.a.b.tb ##35 Mus_C ANCESTRAL SPECIES 1 ENSGT00940000160505 #9 ENSGT01000000214622.a.a.a ENSGT00950000182834.A.a.b.c #8 ENSGT00940000153634.b ENSGT00950000182834.B ##8 ENSGT00570000079239 ENSGT00390000013448.a.a.j.b ENSGT00390000013448.a.a.j.a ENSGT00390000002210.d #16 ENSGT00940000159576 #17 ENSGT00390000010056.z #20 ENSGT00950000183044.a.a.a.c #19 ENSGT00390000010056.y.a.b #20 ENSGT00390000010056.y.a.a #20 ENSGT00530000063402.b #21 ENSGT01100000263504.a.b.a.b.a.b.tb ##35 ENSGT00530000063651.a #23 ENSGT00940000162190 #24 ENSGT00390000003188.u #25 ENSGT00940000156058 #26 ENSGT00390000008003 #27 ENSGT00940000156764.a #28 ENSGT00940000157923 #29 ENSGT00940000156810 #30 ENSGT01030000234517.H.b #31 ENSGT00860000135936 ENSGT00390000018900 #32 ENSGT00940000163104 #33 ENSGT00390000004799 #34 ENSGT00390000005861 ENSGT00950000183142.a.b.a.b #36 spretus MODERN SPECIES Enah (MGP_SPRETEiJ_G0015796) #13 Lbr (MGP_SPRETEiJ_G0015795) #11 MGP_SPRETEiJ_G0015794 #9 MGP_SPRETEiJ_G0015793 Cnih3 (MGP_SPRETEiJ_G0015792) #8 Wdr26 (MGP_SPRETEiJ_G0015791) Cnih4 (MGP_SPRETEiJ_G0015790) ##8 Nvl (MGP_SPRETEiJ_G0015789) 9130409I23Rik (MGP_SPRETEiJ_G0015788) Ephx1 (MGP_SPRETEiJ_G0015787) #16 Tmem63a (MGP_SPRETEiJ_G0015786) #17 Pycr2 (MGP_SPRETEiJ_G0015785) #19 MGP_SPRETEiJ_G0015784 #20 MGP_SPRETEiJ_G0015783 #20 Sde2 (MGP_SPRETEiJ_G0015782) #21 MGP_SPRETEiJ_G0015781 ##35 Acbd3 (MGP_SPRETEiJ_G0015780) #23 Mixl1 (MGP_SPRETEiJ_G0015779) #24 Lin9 (MGP_SPRETEiJ_G0015778) #25 Parp1 (MGP_SPRETEiJ_G0015777) #26 Stum (MGP_SPRETEiJ_G0015776) #27 Itpkb (MGP_SPRETEiJ_G0015775) #28 Psen2 (MGP_SPRETEiJ_G0015774) #29 Coq8a (MGP_SPRETEiJ_G0015773) #30 Cdc42bpa (MGP_SPRETEiJ_G0015772) #31 MGP_SPRETEiJ_G0015771 Ahctf1 (MGP_SPRETEiJ_G0015770) #32 Kif28 (MGP_SPRETEiJ_G0015769) #33 Sccpdh (MGP_SPRETEiJ_G0015768) #34 Cnst (MGP_SPRETEiJ_G0015767) MGP_SPRETEiJ_G0015766 #36 Steppe mouse DUPLICATION Steppe mouse MODERN SPECIES 3378 Pls1 (ENSMSIG00000016487) ENSMSIG00000016478 Atr (ENSMSIG00000016256) Xrn1 (ENSMSIG00000016035) ENSMSIG00000015907 Tfdp2 (ENSMSIG00000015771) Atp1b3 (ENSMSIG00000015722) ENSMSIG00000015688 Gm28729 (ENSMSIG00000015659) Rasa2 (ENSMSIG00000015576) Zbtb38 (ENSMSIG00000015564) ENSMSIG00000015558 ENSMSIG00000015553 ENSMSIG00000015549 Pxylp1 (ENSMSIG00000015485) ENSMSIG00000015465 ##35 Spsb4 (ENSMSIG00000015457) Slc25a36 (ENSMSIG00000015406) ENSMSIG00000015401 Trim42 (ENSMSIG00000015370) Clstn2 (ENSMSIG00000015272) Nmnat3 (ENSMSIG00000015178) ENSMSIG00000015144 Rbp2 (ENSMSIG00000015122) ENSMSIG00000015116 Copb2 (ENSMSIG00000015074) Mrps22 (ENSMSIG00000015058) Prr23a1 (ENSMSIG00000015037) Prr23a3 (ENSMSIG00000015032) ENSMSIG00000015018 7420426K07Rik (ENSMSIG00000015012) Steppe mouse MODERN SPECIES 2990 ENSMSIG00000025765 Slc2a9 (ENSMSIG00000025742) Drd5 (ENSMSIG00000025736) Otop1 (ENSMSIG00000025707) Tmem128 (ENSMSIG00000025692) Lyar (ENSMSIG00000025639) Zbtb49 (ENSMSIG00000025615) Nsg1 (ENSMSIG00000025606) Stx18 (ENSMSIG00000025536) Msx1 (ENSMSIG00000025490) ENSMSIG00000025482 ##35 ENSMSIG00000025459 ENSMSIG00000025454 Stk32b (ENSMSIG00000025444) Evc2 (ENSMSIG00000025349) Evc (ENSMSIG00000025200) Crmp1 (ENSMSIG00000025123) Gm1043 (ENSMSIG00000025118) Jakmip1 (ENSMSIG00000025016) Wfs1 (ENSMSIG00000024996) Ppp2r2c (ENSMSIG00000024982) Man2b2 (ENSMSIG00000024942) Mrfap1 (ENSMSIG00000024931) Bloc1s4 (ENSMSIG00000024927) ENSMSIG00000024921 ENSMSIG00000024912 Lesser Egyptian jerboa DUPLICATION Lesser Egyptian jerboa MODERN SPECIES 51 ENSJJAG00000023116 ENSJJAG00000007609 Dnah14 (ENSJJAG00000023244) #9 Cnih3 (ENSJJAG00000023601) #8 Wdr26 (ENSJJAG00000019959) ENSJJAG00000020517 ##8 Nvl (ENSJJAG00000003012) ENSJJAG00000000689 ENSJJAG00000022098 Ephx1 (ENSJJAG00000022906) #16 Tmem63a (ENSJJAG00000016345) #17 ENSJJAG00000009374 #20 Pycr2 (ENSJJAG00000014536) #19 ENSJJAG00000011178 #20 Sde2 (ENSJJAG00000002996) #21 ENSJJAG00000000867 ##35 Acbd3 (ENSJJAG00000014401) #23 ENSJJAG00000018401 #24 Lin9 (ENSJJAG00000019828) #25 Parp1 (ENSJJAG00000023497) #26 Stum (ENSJJAG00000021582) #27 Itpkb (ENSJJAG00000010265) #28 Psen2 (ENSJJAG00000023570) #29 Coq8a (ENSJJAG00000001225) #30 Cdc42bpa (ENSJJAG00000010408) #31 Ahctf1 (ENSJJAG00000015815) #32 Kif28 (ENSJJAG00000009428) #33 Sccpdh (ENSJJAG00000016528) #34 Cnst (ENSJJAG00000019924) Tfb2m (ENSJJAG00000019285) #36 Smyd3 (ENSJJAG00000024434) #37 Lesser Egyptian jerboa MODERN SPECIES 59 Adck5 (ENSJJAG00000014921) Slc52a2 (ENSJJAG00000010981) Fbxl6 (ENSJJAG00000011494) Scrt1 (ENSJJAG00000015743) Dgat1 (ENSJJAG00000017517) Hsf1 (ENSJJAG00000024049) Scx (ENSJJAG00000023885) Bop1 (ENSJJAG00000003954) Mroh1 (ENSJJAG00000017014) Hgh1 (ENSJJAG00000023992) ENSJJAG00000022903 ENSJJAG00000014076 ENSJJAG00000019872 Sharpin (ENSJJAG00000011432) Cyc1 (ENSJJAG00000013463) ENSJJAG00000023798 ##35 ENSJJAG00000018517 ENSJJAG00000020202 Exosc4 (ENSJJAG00000009655) Oplah (ENSJJAG00000023595) Smpd5 (ENSJJAG00000018992) Spatc1 (ENSJJAG00000019701) ENSJJAG00000015533 Parp10 (ENSJJAG00000017801) Plec (ENSJJAG00000012390) BC024139 (ENSJJAG00000016163) Nrbp2 (ENSJJAG00000015418) Puf60 (ENSJJAG00000001076) Scrib (ENSJJAG00000016202) Iqank1 (ENSJJAG00000022777) Fam83h (ENSJJAG00000021217) Lesser Egyptian jerboa MODERN SPECIES 138 ENSJJAG00000016758 ENSJJAG00000016531 ENSJJAG00000013189 Dusp4 (ENSJJAG00000015845) Tnks (ENSJJAG00000010315) ENSJJAG00000000167 ENSJJAG00000022750 Ppp1r3b (ENSJJAG00000012925) Eri1 (ENSJJAG00000015740) Mfhas1 (ENSJJAG00000015209) Gm19410 (ENSJJAG00000001787) Cldn23 (ENSJJAG00000013088) Prag1 (ENSJJAG00000022855) Lonrf1 (ENSJJAG00000001000) ENSJJAG00000000560 ENSJJAG00000013644 ##35 ENSJJAG00000021792 Arrb2 (ENSJJAG00000018893) Med11 (ENSJJAG00000018121) Cxcl16 (ENSJJAG00000012250) Zmynd15 (ENSJJAG00000007512) ENSJJAG00000000395 Tm4sf5 (ENSJJAG00000022769) Vmo1 (ENSJJAG00000021838) ENSJJAG00000013546 Psmb6 (ENSJJAG00000013428) Gm40193 (ENSJJAG00000013274) Pld2 (ENSJJAG00000006796) Mink1 (ENSJJAG00000004577) 4930544D05Rik (ENSJJAG00000021193) Chrne (ENSJJAG00000019286) Tree shrew DUPLICATION Tree shrew MODERN SPECIES 2289 ENSTBEG00000007579 ##35 CLVS2 (ENSTBEG00000007374) Tree shrew DUPLICATION Tree shrew MODERN SPECIES 6274 ENSTBEG00000001403 ##35 Tree shrew MODERN SPECIES 7503 ENSTBEG00000016588 ##35 Atlantogenata ANCESTRAL SPECIES ENSGT01100000263504.a.b.a.b.a.b ##35 Xenarthra ANCESTRAL SPECIES ENSGT01100000263504.a.b.a.b.a.b ##35 Armadillo MODERN SPECIES 2205 WDPCP (ENSDNOG00000038652) ENSDNOG00000047467 MDH1 (ENSDNOG00000013329) UGP2 (ENSDNOG00000014882) VPS54 (ENSDNOG00000010697) PELI1 (ENSDNOG00000047280) LGALSL (ENSDNOG00000036857) ENSDNOG00000043010 ENSDNOG00000044856 ENSDNOG00000047214 ENSDNOG00000040550 ##35 SERTAD2 (ENSDNOG00000005514) SLC1A4 (ENSDNOG00000005164) Afrotheria ANCESTRAL SPECIES ENSGT01100000263504.a.b.a.b.a.b ##35 Afrotheria_a ANCESTRAL SPECIES ENSGT01100000263504.a.b.a.b.a.b ##35 Elephant DUPLICATION Elephant MODERN SPECIES 301 EVX2 (ENSLAFG00000013264) LNPK (ENSLAFG00000004502) ENSLAFG00000010768 ATF2 (ENSLAFG00000006463) CHN1 (ENSLAFG00000011074) CHRNA1 (ENSLAFG00000011067) WIPF1 (ENSLAFG00000028992) GPR155 (ENSLAFG00000010245) SCRN3 (ENSLAFG00000010241) CIR1 (ENSLAFG00000010236) SP9 (ENSLAFG00000026573) OLA1 (ENSLAFG00000002706) ENSLAFG00000032705 SP3 (ENSLAFG00000013121) CDCA7 (ENSLAFG00000013007) ENSLAFG00000002511 ##35 ENSLAFG00000017140 RAPGEF4 (ENSLAFG00000009822) PDK1 (ENSLAFG00000004732) ITGA6 (ENSLAFG00000004724) DLX2 (ENSLAFG00000003554) DLX1 (ENSLAFG00000003551) METAP1D (ENSLAFG00000008879) HAT1 (ENSLAFG00000010213) SLC25A12 (ENSLAFG00000018521) DYNC1I2 (ENSLAFG00000018517) CYBRD1 (ENSLAFG00000016525) DCAF17 (ENSLAFG00000003558) METTL8 (ENSLAFG00000003151) TLK1 (ENSLAFG00000004201) GORASP2 (ENSLAFG00000005881) Elephant MODERN SPECIES 369 GLRA2 (ENSLAFG00000003888) GEMIN8 (ENSLAFG00000001835) ENSLAFG00000025772 GPM6B (ENSLAFG00000014415) OFD1 (ENSLAFG00000014402) ENSLAFG00000014401 RAB9A (ENSLAFG00000022900) ENSLAFG00000012231 TCEANC (ENSLAFG00000011834) EGFL6 (ENSLAFG00000011830) TMSB4Y (ENSLAFG00000012453) TLR8 (ENSLAFG00000011755) TLR7 (ENSLAFG00000001156) PRPS2 (ENSLAFG00000013920) FRMPD4 (ENSLAFG00000026270) ENSLAFG00000015817 ##35 MSL3 (ENSLAFG00000021932) AMELX (ENSLAFG00000004777) ARHGAP6 (ENSLAFG00000004773) HCCS (ENSLAFG00000004769) MID1 (ENSLAFG00000008423) CLCN4 (ENSLAFG00000002239) WWC3 (ENSLAFG00000015423) ENSLAFG00000029687 Sauria ANCESTRAL SPECIES 34 ENSGT00390000014682 ENSGT00390000014139 ENSGT00940000161057 ENSGT00940000158344.b ENSGT00390000002548 ENSGT00390000005826.a.a ENSGT00940000158431.a.a.a.a.b.a ENSGT00940000160330 ENSGT00940000159112.b ENSGT00940000161901 ENSGT00940000159256 ENSGT00390000017267 ENSGT01090000260005.a.b.a.b.b ENSGT01100000263504.a.b.a.a #22 ENSGT00940000171204 ENSGT01100000263504.a.b.a.b.a.b ##35 ENSGT00940000161634 ENSGT00940000160281 ENSGT00940000160500 ENSGT00940000161895 ENSGT00530000063174.b ENSGT00940000153348.C ENSGT00950000183147.A.b.a ENSGT00940000161428 ENSGT00940000160457 ENSGT00390000015495 ENSGT00940000157823 ENSGT00940000178461 ENSGT00940000160232 ENSGT00940000162064.c.a.a.a.a.a ENSGT00940000161670 Lepidosauria ANCESTRAL SPECIES 39 ENSGT00940000170834 ENSGT00390000014682 ENSGT00390000014139 ENSGT00940000158344.b ENSGT00390000002548 ENSGT00390000005826.a.a ENSGT00940000158431.a.a.a.a.b.a ENSGT00940000160330 ENSGT00940000159112.b ENSGT00940000161901 ENSGT00940000159256 ENSGT00390000017267 ENSGT01090000260005.a.b.a.b.b ENSGT00940000161069 ENSGT01100000263504.a.b.b.a.b ##35 ENSGT01100000263504.a.b.a.b.a.b ##35 ENSGT00940000161634 ENSGT00940000160281 ENSGT00940000160500 ENSGT00940000161895 ENSGT00530000063174.b ENSGT00940000153348.C ENSGT00950000183147.A.b.a ENSGT00940000161428 ENSGT00940000160457 ENSGT00390000015495 ENSGT00940000157823 ENSGT00940000178461 ENSGT00940000160232 ENSGT00940000162064.c.a.a.a.a.b.a ENSGT00940000162064.c.a.a.a.a.a Episquamata ANCESTRAL SPECIES 7 ENSGT00390000014682 ENSGT00390000014139 ENSGT00940000161057 ENSGT00940000158344.b ENSGT00390000002548 ENSGT00390000005826.a.a ENSGT00940000158431.a.a.a.a.b.a ENSGT00940000160330 ENSGT00940000159112.b ENSGT00940000161901 ENSGT00940000159256 ENSGT00390000017267 ENSGT01090000260005.a.b.a.b.b ENSGT00940000161069 ENSGT01100000263504.a.b.b.a.b ##35 ENSGT01100000263504.a.b.a.b.a.b ##35 ENSGT00940000161634 ENSGT00940000160281 ENSGT00940000160500 ENSGT00940000161895 ENSGT00530000063174.b ENSGT00940000153348.C ENSGT00950000183147.A.b.a ENSGT00940000161428 ENSGT00940000160457 ENSGT00390000015495 ENSGT00940000157823 ENSGT00940000178461 ENSGT00940000160232 ENSGT00530000063461.B ENSGT00940000160230 Toxicofera ANCESTRAL SPECIES 22 ENSGT00940000161445 ENSGT00940000170834 ENSGT00390000014682 ENSGT00390000014139 ENSGT00940000161057 ENSGT00940000158344.b ENSGT00390000002548 ENSGT00390000005826.a.a ENSGT00940000158431.a.a.a.a.b.a ENSGT00940000160330 ENSGT00940000159112.b ENSGT00940000159256 ENSGT00390000017267 ENSGT00940000161069 ENSGT01090000260005.a.b.a.b.b ENSGT01100000263504.a.b.a.b.a.b ##35 ENSGT00940000161634 ENSGT00940000160281 ENSGT00940000160500 ENSGT00940000161895 ENSGT00530000063174.b ENSGT00940000153348.C ENSGT00950000183147.A.b.a ENSGT00940000161428 ENSGT00940000160457 ENSGT00390000015495 ENSGT00940000157823 ENSGT00940000178461 ENSGT00940000160232 ENSGT00530000063461.B ENSGT00940000160230 Elapidae ANCESTRAL SPECIES 9 ENSGT00940000161445.bb ENSGT00390000014682.a ENSGT00390000014139 ENSGT00940000161057 ENSGT00940000158344.b ENSGT00390000002548.d ENSGT00390000005826.a.a ENSGT00940000158431.a.a.a.a.b.a ENSGT00940000160330 ENSGT00940000159112.b ENSGT00940000159256 ENSGT00390000017267 ENSGT00940000161069 ENSGT01090000260005.a.b.a.b.b ENSGT00940000162247.a ENSGT01100000263504.a.b.a.b.a.b ##35 ENSGT00940000161634 ENSGT00940000160281 ENSGT00940000160500 ENSGT00940000161895 ENSGT00530000063174.b ENSGT00940000153348.C ENSGT00950000183147.A.b.a ENSGT00940000161428 ENSGT00940000160457.d ENSGT00390000015495 ENSGT00940000157823 ENSGT00940000178461 ENSGT00940000160232 ENSGT00530000063461.B ENSGT00940000160230 Elapidae_a ANCESTRAL SPECIES 33 ENSGT00940000161445.cb ENSGT00940000161445.bb ENSGT00390000014682.a ENSGT00390000014139 ENSGT00940000161057 ENSGT00940000158344.b ENSGT00390000002548.d ENSGT00390000002548.c ENSGT00390000005826.a.a ENSGT00940000158431.a.a.a.a.b.a ENSGT00940000160330 ENSGT00940000159112.b ENSGT00940000159256 ENSGT00390000017267 ENSGT00940000161069 ENSGT01100000263504.a.b.a.b.a.b ##35 ENSGT00940000161634 ENSGT00940000160281 ENSGT00940000160500 ENSGT00940000161895 ENSGT00530000063174.b ENSGT00940000153348.C ENSGT00950000183147.A.b.a ENSGT00940000161428 ENSGT00940000160457.d ENSGT00390000015495 ENSGT00940000157823 ENSGT00940000178461 ENSGT00940000160232 ENSGT00530000063461.B ENSGT00940000160230 Acanthophiinae ANCESTRAL SPECIES 32 ENSGT00940000155288.b ENSGT00940000159883 ENSGT00940000161445.bb ENSGT00390000014682.a ENSGT00390000014139 ENSGT00940000161057 ENSGT00940000158344.b ENSGT00390000002548.c ENSGT00390000005826.a.a ENSGT00940000158431.a.a.a.a.b.a ENSGT00940000160330 ENSGT00940000159112.b ENSGT00940000159256 ENSGT00390000017267 ENSGT00940000161069 ENSGT01100000263504.a.b.a.b.a.b ##35 ENSGT00940000161634 ENSGT00940000160281 ENSGT00940000160500 ENSGT00940000161895 ENSGT00530000063174.b ENSGT00940000153348.C ENSGT00950000183147.A.b.a ENSGT00940000161428 ENSGT00940000160457.d ENSGT00390000015495 ENSGT00940000157823 ENSGT00940000178461 ENSGT00940000160232 ENSGT00530000063461.B ENSGT00940000160230 Eastern brown snake MODERN SPECIES 77 PSMD8 (ENSPTXG00000019025) ENSPTXG00000019026 ENSPTXG00000019027 ENSPTXG00000019028 SLC8A2 (ENSPTXG00000019029) ENSPTXG00000019030 ENSPTXG00000019031 NAPA (ENSPTXG00000019032) ENSPTXG00000019033 ZNF541 (ENSPTXG00000019034) BICRA (ENSPTXG00000019035) EHD2 (ENSPTXG00000019036) NOP53 (ENSPTXG00000019037) ENSPTXG00000019039 ENSPTXG00000019040 ENSPTXG00000019041 ##35 CRX (ENSPTXG00000019042) ENSPTXG00000019043 DMAC2 (ENSPTXG00000019044) B3GNT8 (ENSPTXG00000019045) BCKDHA (ENSPTXG00000019046) EXOSC5 (ENSPTXG00000019047) ENSPTXG00000019048 CCDC97 (ENSPTXG00000019049) ENSPTXG00000019050 AXL (ENSPTXG00000019051) CLPTM1 (ENSPTXG00000019052) ENSPTXG00000019053 CLASRP (ENSPTXG00000019054) GEMIN7 (ENSPTXG00000019056) ENSPTXG00000019057 Archelosauria ANCESTRAL SPECIES 33 ENSGT00390000014682 ENSGT00390000014139 ENSGT00940000161057 ENSGT00940000158344.b ENSGT00390000002548 ENSGT00390000005826.a.a ENSGT00940000158431.a.a.a.a.b.a ENSGT00940000160330 ENSGT00940000159112.b ENSGT00940000161901 ENSGT00940000159256 ENSGT00390000017267 ENSGT01090000260005.a.b.a.b.b ENSGT01100000263504.a.b.a.a #22 ENSGT00940000171204 ENSGT01100000263504.a.b.a.b.a.b ##35 ENSGT00940000161634 ENSGT00940000160281 ENSGT00940000160500 ENSGT00940000161895 ENSGT00530000063174.b ENSGT00940000153348.C ENSGT00940000161428 ENSGT00940000160457 ENSGT00390000015495 ENSGT00940000157823 ENSGT00940000178461 ENSGT00940000160232 ENSGT00940000157162 ENSGT00940000159399 ENSGT00940000165900 Archosauria ANCESTRAL SPECIES ENSGT01100000263504.a.b.a.b.a.b ##35 Aves ANCESTRAL SPECIES ENSGT01100000263504.a.b.a.b.a.b ##35 Neognathae ANCESTRAL SPECIES ENSGT01100000263504.a.b.a.b.a.b ##35 Neognathae_b ANCESTRAL SPECIES ENSGT01100000263504.a.b.a.b.a.b ##35 Passeriformes ANCESTRAL SPECIES ENSGT01100000263504.a.b.a.b.a.b ##35 Passeriformes_d ANCESTRAL SPECIES ENSGT01100000263504.a.b.a.b.a.b ##35 Passeriformes_g ANCESTRAL SPECIES ENSGT01100000263504.a.b.a.b.a.b ##35 Passeroidea ANCESTRAL SPECIES ENSGT01100000263504.a.b.a.b.a.b ##35 Common canary MODERN SPECIES 897 ENSSCAG00000000261 ##35 Cryptodira ANCESTRAL SPECIES 35 ENSGT00390000014682 ENSGT00390000014139 ENSGT00940000161057 ENSGT00940000158344.b ENSGT00390000002548 ENSGT00390000005826.a.a ENSGT00940000158431.a.a.a.a.b.a ENSGT00940000160330 ENSGT00940000159112.b ENSGT00940000161901 ENSGT00940000159256 ENSGT00390000017267 ENSGT01090000260005.a.b.a.b.b ENSGT00940000161069 ENSGT01100000263504.a.b.b.a.b ##35 ENSGT01100000263504.a.b.a.b.a.b ##35 ENSGT00940000161634 ENSGT00940000160281 ENSGT00940000160500 ENSGT00940000161895 ENSGT00530000063174.b ENSGT00940000153348.C ENSGT00940000161428 ENSGT00940000160457 ENSGT00390000015495 ENSGT00940000157823 ENSGT00940000160232 ENSGT00940000157162 Testudinoidea ANCESTRAL SPECIES 30 ENSGT00940000161445 ENSGT00940000170834 ENSGT00390000014682 ENSGT00390000014139 ENSGT00940000161057.f ENSGT00940000158344.b ENSGT00390000002548 ENSGT00390000005826.a.a ENSGT00940000158431.a.a.a.a.b.a ENSGT00940000160330 ENSGT00940000159112.b ENSGT00940000161901 ENSGT00940000159256 ENSGT00390000017267 ENSGT01090000260005.a.b.a.b.b ENSGT01100000263504.a.b.a.b.a.b ##35 ENSGT00940000161634 ENSGT00940000160281 ENSGT00940000160500 ENSGT00940000161895 ENSGT00530000063174.b ENSGT00940000153348.C.a ENSGT00940000161428 ENSGT00940000160457 ENSGT00390000015495 ENSGT00940000157823 ENSGT00940000155454.t ENSGT00940000160232 ENSGT00940000157162 ENSGT00940000162064.c.a.a.a.a.b.a ENSGT00940000162064.c.a.a.a.a.a Emydidae ANCESTRAL SPECIES 45 ENSGT00940000161445 ENSGT00940000170834 ENSGT00390000014682 ENSGT00390000014139 ENSGT00940000161057.f ENSGT00940000158344.b ENSGT00390000002548 ENSGT00390000005826.a.a ENSGT00940000158431.a.a.a.a.b.a ENSGT00940000160330 ENSGT00940000159112.b ENSGT00940000161901 ENSGT00940000159256 ENSGT00390000017267 ENSGT01090000260005.a.b.a.b.b ENSGT01100000263504.a.b.a.b.a.b ##35 ENSGT00940000161634 ENSGT00940000160281 ENSGT00940000160500 ENSGT00940000161895 ENSGT00530000063174.b ENSGT00940000157823 ENSGT00940000155454.t ENSGT00950000183147.A.b.a ENSGT00940000160457.e ENSGT00940000162064.c.a.a.a.a.b.b ENSGT00940000157162 ENSGT00940000162064.c.a.a.a.a.b.a ENSGT00940000162064.c.a.a.a.a.a ENSGT00940000161670 ENSGT00940000162064.c.a.a.a.b.e painted turtle MODERN SPECIES 949 PSMD8 (ENSCPBG00000008752) ENSCPBG00000008758 MEIS3 (ENSCPBG00000008795) SLC8A2 (ENSCPBG00000008974) KPTN (ENSCPBG00000008980) NAPA (ENSCPBG00000008994) ENSCPBG00000009000 ZNF541 (ENSCPBG00000009004) BICRA (ENSCPBG00000009017) ENSCPBG00000009030 ENSCPBG00000009033 EHD2 (ENSCPBG00000009041) NOP53 (ENSCPBG00000009047) ENSCPBG00000009057 ENSCPBG00000009062 ENSCPBG00000009066 ##35 CRX (ENSCPBG00000009076) ENSCPBG00000009093 DMAC2 (ENSCPBG00000009103) B3GNT8 (ENSCPBG00000009107) BCKDHA (ENSCPBG00000009111) ENSCPBG00000009119 ENSCPBG00000009125 ENSCPBG00000009126 ENSCPBG00000009133 ENSCPBG00000009142 CYP2B6 (ENSCPBG00000009150) ENSCPBG00000009158 ENSCPBG00000009199 ENSCPBG00000009208 ENSCPBG00000009724 Cyclostomata ANCESTRAL SPECIES ENSGT01100000263504.a.b.a.b.a.b ##35 Lamprey MODERN SPECIES 2042 ENSPMAG00000005364 h3f3b.1 (ENSPMAG00000005373) ##35 ENSPMAG00000005403 Ciona ANCESTRAL SPECIES ENSGT01100000263504.a.b.a.b.a.b ##35 Ciona intestinalis MODERN SPECIES 2 ENSCING00000019028 rps13 (ENSCING00000018058) ENSCING00000019720 ENSCING00000020964 ENSCING00000020063 ENSCING00000022810 ENSCING00000022560 ENSCING00000024304 ENSCING00000020281 ENSCING00000022717 ENSCING00000022901 ENSCING00000018297 ENSCING00000020475 ENSCING00000024875 ENSCING00000018655 ENSCING00000002753 ##35 ENSCING00000025054 ENSCING00000018166 ENSCING00000021659 ENSCING00000020986 ENSCING00000019736 ENSCING00000021526 ENSCING00000022627 ENSCING00000017945 ENSCING00000020921 ENSCING00000020016 ENSCING00000023027 ENSCING00000020685 ENSCING00000020492 ENSCING00000018049 ENSCING00000021097 Chordata ANCESTRAL SPECIES ENSGT01100000263504.a.b.a.b.b ##35 Vertebrata ANCESTRAL SPECIES ENSGT01100000263504.a.b.a.b.b ##35 Gnathostomata ANCESTRAL SPECIES ENSGT01100000263504.a.b.a.b.b ##35 Euteleostomi ANCESTRAL SPECIES ENSGT01100000263504.a.b.a.b.b ##35 Actinopterygii ANCESTRAL SPECIES ENSGT01100000263504.a.b.a.b.b ##35 Neopterygii ANCESTRAL SPECIES ENSGT01100000263504.a.b.a.b.b ##35 Osteoglossocephalai ANCESTRAL SPECIES ENSGT01100000263504.a.b.a.b.b ##35 Clupeocephala ANCESTRAL SPECIES ENSGT01100000263504.a.b.a.b.b ##35 Euteleosteomorpha ANCESTRAL SPECIES ENSGT01100000263504.a.b.a.b.b ##35 Protacanthopterygii ANCESTRAL SPECIES ENSGT01100000263504.a.b.a.b.b ##35 Salmoninae ANCESTRAL SPECIES ENSGT01100000263504.a.b.a.b.b ##35 Salmoninae_a ANCESTRAL SPECIES ENSGT01100000263504.a.b.a.b.b ##35 Salmo ANCESTRAL SPECIES ENSGT01100000263504.a.b.a.b.b ##35 River trout MODERN SPECIES 18 eif3k (ENSSTUG00000020428) actn4 (ENSSTUG00000019334) ENSSTUG00000019263 ENSSTUG00000019254 slc8a2b (ENSSTUG00000019177) srsf7a (ENSSTUG00000019123) hnrnpl2 (ENSSTUG00000018829) ech1 (ENSSTUG00000018505) ENSSTUG00000018423 meis3 (ENSSTUG00000018343) ENSSTUG00000018331 sirt2 (ENSSTUG00000018168) GJD2 (ENSSTUG00000018157) nop53 (ENSSTUG00000018111) ENSSTUG00000018105 ##35 ENSSTUG00000018091 ##35 ENSSTUG00000018083 psma6l (ENSSTUG00000018066) ENSSTUG00000018059 si:dkey-260j18.2 (ENSSTUG00000018020) slc5a2 (ENSSTUG00000017792) fbxo46 (ENSSTUG00000017765) ENSSTUG00000017761 coq8b (ENSSTUG00000016640) numbl (ENSSTUG00000016566) ENSSTUG00000016459 dpf1 (ENSSTUG00000016233) ENSSTUG00000016209 ENSSTUG00000016197 ENSSTUG00000016185 MFRP (ENSSTUG00000016169) Northern pike MODERN SPECIES 4 ENSELUG00000023832 ENSELUG00000023745 SPATA20 (ENSELUG00000023737) CACNA1G (ENSELUG00000023718) ENSELUG00000023587 ogfod3 (ENSELUG00000023571) hexdc (ENSELUG00000034259) cybc1 (ENSELUG00000023549) narf (ENSELUG00000023538) ENSELUG00000023521 mrpl38 (ENSELUG00000023497) ENSELUG00000023482 wbp2 (ENSELUG00000023452) UNC13D (ENSELUG00000023439) unk (ENSELUG00000023290) ENSELUG00000030500 ##35 ENSELUG00000023261 zgc:194990 (ENSELUG00000023153) itgb4 (ENSELUG00000023106) sap30bp (ENSELUG00000022580) CDR2L (ENSELUG00000022542) mrpl58 (ENSELUG00000022498) wdr45b (ENSELUG00000022460) foxk2a (ENSELUG00000022427) ENSELUG00000022374 SHISA6 (ENSELUG00000022348) DNAH17 (ENSELUG00000022292) ENSELUG00000026536 MYOCD (ENSELUG00000022024) map2k4b (ENSELUG00000021939) adprm (ENSELUG00000021889) Acanthomorphata ANCESTRAL SPECIES ENSGT01100000263504.a.b.a.b.b ##35 Euacanthomorphacea ANCESTRAL SPECIES ENSGT01100000263504.a.b.a.b.b ##35 Percomorphaceae ANCESTRAL SPECIES ENSGT01100000263504.a.b.a.b.b ##35 Percomorphaceae_B ANCESTRAL SPECIES ENSGT01100000263504.a.b.a.b.b ##35 Ovalentaria ANCESTRAL SPECIES ENSGT01100000263504.a.b.a.b.b ##35 Ovalentaria_B ANCESTRAL SPECIES ENSGT01100000263504.a.b.a.b.b ##35 Cichlidae ANCESTRAL SPECIES ENSGT01100000263504.a.b.a.b.b ##35 Pseudocrenilabrinae ANCESTRAL SPECIES ENSGT01100000263504.a.b.a.b.b ##35 Pseudocrenilabrinae_A ANCESTRAL SPECIES ENSGT01100000263504.a.b.a.b.b ##35 Haplochromini ANCESTRAL SPECIES ENSGT01100000263504.a.b.a.b.b ##35 Burton s mouthbrooder MODERN SPECIES 349 PIK3CB (ENSHBUG00000023142) PER2 (ENSHBUG00000000709) her13 (ENSHBUG00000023176) her8.2 (ENSHBUG00000023184) ENSHBUG00000023216 ITM2C (ENSHBUG00000023261) lpar5b (ENSHBUG00000023274) lpar5b (ENSHBUG00000023292) ENSHBUG00000023359 meis3 (ENSHBUG00000023485) ENSHBUG00000023507 sirt2 (ENSHBUG00000023526) dmac2 (ENSHBUG00000023540) GJD2 (ENSHBUG00000023556) nop53 (ENSHBUG00000023625) ENSHBUG00000023636 ##35 ENSHBUG00000023653 #22 ENSHBUG00000023669 psma6l (ENSHBUG00000023708) ENSHBUG00000023820 sars2 (ENSHBUG00000023829) si:dkey-260j18.2 (ENSHBUG00000001323) slc5a2 (ENSHBUG00000001326) fbxo46 (ENSHBUG00000001328) coq8b (ENSHBUG00000001335) numbl (ENSHBUG00000000006) ENSHBUG00000001342 dpf1 (ENSHBUG00000001350) ENSHBUG00000000007 ENSHBUG00000001371 ENSHBUG00000001373 Sarcopterygii ANCESTRAL SPECIES ENSGT01100000263504.a.b.a.b.b ##35 Tetrapoda ANCESTRAL SPECIES ENSGT01100000263504.a.b.a.b.b ##35 Amniota ANCESTRAL SPECIES ENSGT01100000263504.a.b.a.b.b ##35 Mammalia ANCESTRAL SPECIES ENSGT01100000263504.a.b.a.b.b ##35 Theria ANCESTRAL SPECIES ENSGT01100000263504.a.b.a.b.b ##35 Eutheria ANCESTRAL SPECIES ENSGT01100000263504.a.b.a.b.b ##35 Boreoeutheria ANCESTRAL SPECIES ENSGT01100000263504.a.b.a.b.b ##35 Euarchontoglires ANCESTRAL SPECIES ENSGT01100000263504.a.b.a.b.b ##35 Primates ANCESTRAL SPECIES ENSGT01100000263504.a.b.a.b.b ##35 Haplorrhini ANCESTRAL SPECIES ENSGT01100000263504.a.b.a.b.b ##35 Simiiformes ANCESTRAL SPECIES ENSGT01100000263504.a.b.a.b.b ##35 Catarrhini ANCESTRAL SPECIES ENSGT01100000263504.a.b.a.b.b ##35 Cercopithecidae ANCESTRAL SPECIES ENSGT01100000263504.a.b.a.b.b ##35 Rhinopithecus ANCESTRAL SPECIES ENSGT01100000263504.a.b.a.b.b ##35 Golden snub-nosed monkey MODERN SPECIES 1699 ARL6IP6 (ENSRROG00000043370) PRPF40A (ENSRROG00000032937) FMNL2 (ENSRROG00000023932) ENSRROG00000030157 ENSRROG00000015902 ##35 STAM2 (ENSRROG00000030925) CACNB4 (ENSRROG00000044165) ARL5A (ENSRROG00000040290) ENSRROG00000035506 ENSRROG00000023658 Euarchontoglires_A ANCESTRAL SPECIES ENSGT01100000263504.a.b.a.b.b ##35 Glires ANCESTRAL SPECIES ENSGT01100000263504.a.b.a.b.b ##35 Rodentia ANCESTRAL SPECIES ENSGT01100000263504.a.b.a.b.b ##35 Rodentia_A ANCESTRAL SPECIES ENSGT01100000263504.a.b.a.b.b ##35 Sciuridae ANCESTRAL SPECIES ENSGT01100000263504.a.b.a.b.b ##35 Eurasian red squirrel MODERN SPECIES 3 ENSSVLG00005012197 #9 LBR (ENSSVLG00005012135) #11 ENSSVLG00005011796 ENSSVLG00005011720 ENSSVLG00005011663 ENSSVLG00005011588 BOP1 (ENSSVLG00005011521) ENAH (ENSSVLG00005011282) #13 SRP9 (ENSSVLG00005011178) #15 EPHX1 (ENSSVLG00005011131) #16 TMEM63A (ENSSVLG00005011067) #17 ENSSVLG00005010994 #20 PYCR2 (ENSSVLG00005010901) #19 ENSSVLG00005010786 #20 SDE2 (ENSSVLG00005010717) #21 ENSSVLG00005010668 ##35 ACBD3 (ENSSVLG00005010595) #23 MIXL1 (ENSSVLG00005010553) #24 ENSSVLG00005010350 #25 ENSSVLG00005010227 PARP1 (ENSSVLG00005010193) #26 STUM (ENSSVLG00005010162) #27 ITPKB (ENSSVLG00005010130) #28 PSEN2 (ENSSVLG00005010078) #29 ENSSVLG00005010048 COQ8A (ENSSVLG00005009997) #30 ENSSVLG00005009948 CDC42BPA (ENSSVLG00005009702) #31 AHCTF1 (ENSSVLG00005009197) #32 ENSSVLG00005009114 SCCPDH (ENSSVLG00005009073) #34 Marsupialia ANCESTRAL SPECIES ENSGT01100000263504.a.b.a.b.b ##35 Marsupialia_b ANCESTRAL SPECIES ENSGT01100000263504.a.b.a.b.b ##35 Diprotodontia ANCESTRAL SPECIES ENSGT01100000263504.a.b.a.b.b ##35 Diprotodontia_a ANCESTRAL SPECIES ENSGT01100000263504.a.b.a.b.b ##35 Common wonbat MODERN SPECIES 1035 ENSVURG00010016506 ENSVURG00010016496 ##8 ENSVURG00010016481 ENSVURG00010016460 #8 ENSVURG00010016446 ENSVURG00010016426 #9 ENSVURG00010016408 #11 ENSVURG00010016298 #13 ENSVURG00010016263 #15 ENSVURG00010016255 #16 ENSVURG00010016235 #17 ENSVURG00010016227 ENSVURG00010016219 #19 ENSVURG00010016197 #20 ENSVURG00010016188 #21 ENSVURG00010016172 ##35 ENSVURG00010016163 #23 ENSVURG00010016150 #24 ENSVURG00010016145 #25 ENSVURG00010016132 #26 ENSVURG00010016121 #27 ENSVURG00010016107 #28 ENSVURG00010016090 #29 ENSVURG00010016076 #30 ENSVURG00010016001 #31 ENSVURG00010015965 #32 ENSVURG00010015938 #34 ENSVURG00010015925 ENSVURG00010015915 #36 ENSVURG00010015901 ENSVURG00010015887 Anura ANCESTRAL SPECIES ENSGT01100000263504.a.b.a.b.b ##35 Leishan spiny toad MODERN SPECIES 3 ENSLLEG00000030492 ENSLLEG00000030488 PLTP (ENSLLEG00000030472) PCIF1 (ENSLLEG00000030447) ENSLLEG00000030434 ZNF335 (ENSLLEG00000030412) ENSLLEG00000030401 MMP9 (ENSLLEG00000030379) SLC12A5 (ENSLLEG00000030197) NCOA5 (ENSLLEG00000030129) CD40 (ENSLLEG00000030087) CDH22 (ENSLLEG00000030063) ENSLLEG00000030055 ENSLLEG00000029863 UNK (ENSLLEG00000029781) ENSLLEG00000029753 ##35 ENSLLEG00000029707 ITGB4 (ENSLLEG00000029094) SAP30BP (ENSLLEG00000028936) ENSLLEG00000028899 RECQL5 (ENSLLEG00000028644) ENSLLEG00000028556 ENSLLEG00000028439 ENSLLEG00000028334 SLC32A1 (ENSLLEG00000028300) ARHGAP40 (ENSLLEG00000028104) ACTR5 (ENSLLEG00000028027) PPP1R16B (ENSLLEG00000027912) ENSLLEG00000027880 ENSLLEG00000027872 DHX35 (ENSLLEG00000027484) Ciona ANCESTRAL SPECIES ENSGT01100000263504.a.b.a.b.b ##35 Ciona intestinalis MODERN SPECIES 67 ENSCING00000006480 ENSCING00000022359 ##35 ENSCING00000006521 ENSCING00000024069 ENSCING00000014830 zf(fyve)-11 (ENSCING00000006524) ENSCING00000023845 ENSCING00000020396 ENSCING00000020945 ENSCING00000024809 ENSCING00000014820 ENSCING00000019383 ENSCING00000020942 ENSCING00000004177 ENSCING00000014822 ENSCING00000004143 ENSCING00000004146 Ecdysozoa ANCESTRAL SPECIES ENSGT01100000263504.a.b.a #22 Fruitfly MODERN SPECIES 16 CG31917 (FBgn0031668) Tfb5 (FBgn0265968) SelT (FBgn0031670) vkg (FBgn0016075) Col4a1 (FBgn0000299) CG14042 (FBgn0260451) SP555 (FBgn0260470) CG31650 (FBgn0031673) CG33995 (FBgn0053995) CG44000 (FBgn0264742) CG44001 (FBgn0264743) CG9121 (FBgn0031675) eIF3h (FBgn0022023) senju (FBgn0031676) CG14036 (FBgn0031677) His3.3A (FBgn0014857) #22 Nepl3 (FBgn0031678) Rpn11 (FBgn0028694) qtc (FBgn0028572) RpL37A (FBgn0261608) Pgant5 (FBgn0031681) CG5828 (FBgn0031682) CG4230 (FBgn0031683) ND-13A (FBgn0031684) Msp300 (FBgn0261836) Cyp28d2 (FBgn0031688) Cyp28d1 (FBgn0031689) CG7742 (FBgn0031690) CG14034 (FBgn0250847) TpnC25D (FBgn0031692) tkv (FBgn0003716)