Hystricomorpha_a	ANCESTRAL SPECIES	52	ENSGT00510000049213 #7	ENSGT00940000154295 #8	ENSGT00940000160744 #9	ENSGT00950000183030.m.a.a.a.b #10	ENSGT00940000158977 #11	ENSGT00390000006356 #12	ENSGT00940000161020 #13	ENSGT00390000005914.b #14	ENSGT01050000244879.b.a.a #15	ENSGT00940000155063 #16	ENSGT01090000259985.b.b.b.a.a.b #17	ENSGT01090000259985.b.a.b.a.b #18	ENSGT01090000259985.b.a.b.a.a #19	ENSGT01090000259985.b.a.a.a #20	ENSGT01090000259985.b.b.a.a #21	ENSGT01090000259985.b.b.a.b #22	ENSGT00940000160774 #23	ENSGT00940000156807 #24	ENSGT00940000159390 #25	ENSGT00390000017581.b #26	ENSGT00940000163665 #27	ENSGT00390000011204 #28	ENSGT00950000183001.a.b.b #29	ENSGT00530000063596.A #30	ENSGT00390000007488 #31	ENSGT00950000183028.a.a.a #32	ENSGT00940000157728.b #33	ENSGT00390000000145 #34	ENSGT00940000157868 #35	ENSGT00940000158714 #36	ENSGT00690000101915 #37
Guinea pig	MODERN SPECIES	24	NMS (ENSCPOG00000004100) #7	PDCL3 (ENSCPOG00000033717) #8	ENSCPOG00000034101 #9	ENSCPOG00000021031 #10	TBC1D8 (ENSCPOG00000027502) #11	CNOT11 (ENSCPOG00000012029) #12	RNF149 (ENSCPOG00000022648) #13	CREG2 (ENSCPOG00000010561) #14	RFX8 (ENSCPOG00000002640) #15	MAP4K4 (ENSCPOG00000011630) #16	IL1R2 (ENSCPOG00000037563) #17	IL1R1 (ENSCPOG00000032016) #18	IL1RL2 (ENSCPOG00000003204) #19	IL1RL1 (ENSCPOG00000013443) #20	IL18R1 (ENSCPOG00000022527) #21	IL18RAP (ENSCPOG00000014120) #22	SLC9A4 (ENSCPOG00000033768) #23	SLC9A2 (ENSCPOG00000007613) #24	MFSD9 (ENSCPOG00000035138) #25	TMEM182 (ENSCPOG00000007626) #26	ENSCPOG00000003373 #27	MRPS9 (ENSCPOG00000013967) #28	GPR45 (ENSCPOG00000035701) #29	TGFBRAP1 (ENSCPOG00000001606) #30	C2orf49 (ENSCPOG00000034878) #31	FHL2 (ENSCPOG00000035187) #32	NCK2 (ENSCPOG00000025206) #33	ECRG4 (ENSCPOG00000008375) #34	UXS1 (ENSCPOG00000008367) #35	ST6GAL2 (ENSCPOG00000015612) #36	SLC5A7 (ENSCPOG00000027203) #37
Hystricomorpha_b	ANCESTRAL SPECIES	59	ENSGT00940000154295.o #8	ENSGT00940000160744 #9	ENSGT00950000183030.m.a.a.b.b.a.a.b ##10	ENSGT00950000183030.m.a.a.b.b.a.b.b.b ##10	ENSGT00940000158977 #11	ENSGT00390000006356 #12	ENSGT00940000161020 #13	ENSGT00390000005914.b #14	ENSGT01050000244879.b.a.a #15	ENSGT00940000155063 #16	ENSGT01090000259985.b.b.b.a.a.b #17	ENSGT01090000259985.b.a.b.a.b #18	ENSGT01090000259985.b.a.b.a.a #19	ENSGT01090000259985.b.a.a.a #20	ENSGT01090000259985.b.b.a.a #21	ENSGT01090000259985.b.b.a.b #22	ENSGT00940000160774 #23	ENSGT00940000156807 #24	ENSGT00940000159390 #25	ENSGT00390000017581.b #26	ENSGT00940000163665 #27	ENSGT00390000011204 #28	ENSGT00950000183001.a.b.b #29	ENSGT00530000063596.A #30	ENSGT00390000007488 #31	ENSGT00950000183028.a.a.a #32	ENSGT00940000157728.b #33	ENSGT00390000000145 #34	ENSGT00940000157868 #35	ENSGT00940000158714 #36	ENSGT00690000101915 #37
Long-tailed chinchilla	MODERN SPECIES	177	CHST10 (ENSCLAG00000003206)	NMS (ENSCLAG00000004166) #7	ENSCLAG00000004610 #8	NPAS2 (ENSCLAG00000006228) #9	RPL31 (ENSCLAG00000006775) ##10	TBC1D8 (ENSCLAG00000013253) #11	ENSCLAG00000014249 #12	ENSCLAG00000008966 #13	RFX8 (ENSCLAG00000009461) #15	MAP4K4 (ENSCLAG00000008989) #16	IL1R2 (ENSCLAG00000003202) #17	ENSCLAG00000003425 #18	IL1RL2 (ENSCLAG00000003870) #19	ENSCLAG00000004065 #20	IL18R1 (ENSCLAG00000004416) #21	IL18RAP (ENSCLAG00000005267) #22	SLC9A4 (ENSCLAG00000005526) #23	SLC9A2 (ENSCLAG00000004660) #24	MFSD9 (ENSCLAG00000004767) #25	TMEM182 (ENSCLAG00000004968) #26	MRPS9 (ENSCLAG00000005209) #28	GPR45 (ENSCLAG00000017756) #29	TGFBRAP1 (ENSCLAG00000005507) #30	C2orf49 (ENSCLAG00000005595) #31	FHL2 (ENSCLAG00000008685) #32	NCK2 (ENSCLAG00000008756) #33	ECRG4 (ENSCLAG00000008845) #34	UXS1 (ENSCLAG00000008916) #35	ENSCLAG00000009281 #36	SLC5A7 (ENSCLAG00000009368) #37	SULT1C2 (ENSCLAG00000009532)