Hystricomorpha	ANCESTRAL SPECIES	8	ENSGT00510000049213	ENSGT00940000154295	ENSGT00940000160744	ENSGT00950000183030.m.a.a.a.b ##7	ENSGT00940000158977 #8	ENSGT00390000006356 #9	ENSGT00940000161020	ENSGT00390000005914.b #10	ENSGT01050000244879.b.a.a #11	ENSGT00940000155063 #12	ENSGT01090000259985.b.b.b.a.a.b #14	ENSGT01090000259985.b.a.b.a.b #18	ENSGT01090000259985.b.a.b.a.a #19	ENSGT01090000259985.b.a.a.a #20	ENSGT01090000259985.b.b.a.a #21	ENSGT01090000259985.b.b.a.b #22	ENSGT00940000160774 #23	ENSGT00940000156807 #24	ENSGT00940000159390 #25	ENSGT00390000017581.b #26	ENSGT00940000163665 #29	ENSGT00390000011204 #30	ENSGT00950000183001.a.b.b #31	ENSGT00530000063596.A #32	ENSGT00390000007488 #33	ENSGT00950000183028.a.a.a #34	ENSGT00940000157728.b ##36	ENSGT00390000000145	ENSGT00940000157868	ENSGT00940000158714	ENSGT00690000101915
Naked mole-rat female	MODERN SPECIES	23	RPL31 (ENSHGLG00000034864) #7	TBC1D8 (ENSHGLG00000005052) #8	CNOT11 (ENSHGLG00000005196) #9	CREG2 (ENSHGLG00000045007) #10	RFX8 (ENSHGLG00000009282) #11	MAP4K4 (ENSHGLG00000010571) #12	ENSHGLG00000041789 #13	IL1R2 (ENSHGLG00000014764) #14	ENSHGLG00000042381 #15	ENSHGLG00000036054 #16	ENSHGLG00000046327 #17	IL1R1 (ENSHGLG00000035160) #18	IL1RL2 (ENSHGLG00000006830) #19	IL1RL1 (ENSHGLG00000009148) #20	IL18R1 (ENSHGLG00000014630) #21	IL18RAP (ENSHGLG00000040342) #22	SLC9A4 (ENSHGLG00000015136) #23	SLC9A2 (ENSHGLG00000016134) #24	ENSHGLG00000036196 #25	TMEM182 (ENSHGLG00000048689) #26	ENSHGLG00000004651 #27	ENSHGLG00000047894 #28	POU3F3 (ENSHGLG00000049835) #29	MRPS9 (ENSHGLG00000011532) #30	GPR45 (ENSHGLG00000011855) #31	TGFBRAP1 (ENSHGLG00000012207) #32	C2orf49 (ENSHGLG00000009244) #33	FHL2 (ENSHGLG00000049244) #34	ENSHGLG00000045802 #35	ENSHGLG00000047742 #36	ENSHGLG00000009295 #37
Hystricomorpha_a	ANCESTRAL SPECIES	52	ENSGT00510000049213	ENSGT00940000154295	ENSGT00940000160744	ENSGT00950000183030.m.a.a.a.b ##7	ENSGT00940000158977 #8	ENSGT00390000006356 #9	ENSGT00940000161020	ENSGT00390000005914.b #10	ENSGT01050000244879.b.a.a #11	ENSGT00940000155063 #12	ENSGT01090000259985.b.b.b.a.a.b #14	ENSGT01090000259985.b.a.b.a.b #18	ENSGT01090000259985.b.a.b.a.a #19	ENSGT01090000259985.b.a.a.a #20	ENSGT01090000259985.b.b.a.a #21	ENSGT01090000259985.b.b.a.b #22	ENSGT00940000160774 #23	ENSGT00940000156807 #24	ENSGT00940000159390 #25	ENSGT00390000017581.b #26	ENSGT00940000163665 #29	ENSGT00390000011204 #30	ENSGT00950000183001.a.b.b #31	ENSGT00530000063596.A #32	ENSGT00390000007488 #33	ENSGT00950000183028.a.a.a #34	ENSGT00940000157728.b ##36	ENSGT00390000000145	ENSGT00940000157868	ENSGT00940000158714	ENSGT00690000101915
Hystricomorpha_b	ANCESTRAL SPECIES	59	ENSGT00940000154295.o	ENSGT00940000160744	ENSGT00950000183030.m.a.a.b.b.a.a.b ##7	ENSGT00950000183030.m.a.a.b.b.a.b.b.b ##7	ENSGT00940000158977 #8	ENSGT00390000006356 #9	ENSGT00940000161020	ENSGT00390000005914.b #10	ENSGT01050000244879.b.a.a #11	ENSGT00940000155063 #12	ENSGT01090000259985.b.b.b.a.a.b #14	ENSGT01090000259985.b.a.b.a.b #18	ENSGT01090000259985.b.a.b.a.a #19	ENSGT01090000259985.b.a.a.a #20	ENSGT01090000259985.b.b.a.a #21	ENSGT01090000259985.b.b.a.b #22	ENSGT00940000160774 #23	ENSGT00940000156807 #24	ENSGT00940000159390 #25	ENSGT00390000017581.b #26	ENSGT00940000163665 #29	ENSGT00390000011204 #30	ENSGT00950000183001.a.b.b #31	ENSGT00530000063596.A #32	ENSGT00390000007488 #33	ENSGT00950000183028.a.a.a #34	ENSGT00940000157728.b ##36	ENSGT00390000000145	ENSGT00940000157868	ENSGT00940000158714	ENSGT00690000101915
Long-tailed chinchilla	MODERN SPECIES	177	CHST10 (ENSCLAG00000003206)	NMS (ENSCLAG00000004166)	ENSCLAG00000004610	NPAS2 (ENSCLAG00000006228)	RPL31 (ENSCLAG00000006775) ##7	TBC1D8 (ENSCLAG00000013253) #8	ENSCLAG00000014249 #9	ENSCLAG00000008966	RFX8 (ENSCLAG00000009461) #11	MAP4K4 (ENSCLAG00000008989) #12	IL1R2 (ENSCLAG00000003202) #14	ENSCLAG00000003425 #18	IL1RL2 (ENSCLAG00000003870) #19	ENSCLAG00000004065 #20	IL18R1 (ENSCLAG00000004416) #21	IL18RAP (ENSCLAG00000005267) #22	SLC9A4 (ENSCLAG00000005526) #23	SLC9A2 (ENSCLAG00000004660) #24	MFSD9 (ENSCLAG00000004767) #25	TMEM182 (ENSCLAG00000004968) #26	MRPS9 (ENSCLAG00000005209) #30	GPR45 (ENSCLAG00000017756) #31	TGFBRAP1 (ENSCLAG00000005507) #32	C2orf49 (ENSCLAG00000005595) #33	FHL2 (ENSCLAG00000008685) #34	NCK2 (ENSCLAG00000008756) ##36	ECRG4 (ENSCLAG00000008845)	UXS1 (ENSCLAG00000008916)	ENSCLAG00000009281	SLC5A7 (ENSCLAG00000009368)	SULT1C2 (ENSCLAG00000009532)
Guinea pig	MODERN SPECIES	24	NMS (ENSCPOG00000004100)	PDCL3 (ENSCPOG00000033717)	ENSCPOG00000034101	ENSCPOG00000021031 ##7	TBC1D8 (ENSCPOG00000027502) #8	CNOT11 (ENSCPOG00000012029) #9	RNF149 (ENSCPOG00000022648)	CREG2 (ENSCPOG00000010561) #10	RFX8 (ENSCPOG00000002640) #11	MAP4K4 (ENSCPOG00000011630) #12	IL1R2 (ENSCPOG00000037563) #14	IL1R1 (ENSCPOG00000032016) #18	IL1RL2 (ENSCPOG00000003204) #19	IL1RL1 (ENSCPOG00000013443) #20	IL18R1 (ENSCPOG00000022527) #21	IL18RAP (ENSCPOG00000014120) #22	SLC9A4 (ENSCPOG00000033768) #23	SLC9A2 (ENSCPOG00000007613) #24	MFSD9 (ENSCPOG00000035138) #25	TMEM182 (ENSCPOG00000007626) #26	ENSCPOG00000003373 #29	MRPS9 (ENSCPOG00000013967) #30	GPR45 (ENSCPOG00000035701) #31	TGFBRAP1 (ENSCPOG00000001606) #32	C2orf49 (ENSCPOG00000034878) #33	FHL2 (ENSCPOG00000035187) #34	NCK2 (ENSCPOG00000025206) ##36	ECRG4 (ENSCPOG00000008375)	UXS1 (ENSCPOG00000008367)	ST6GAL2 (ENSCPOG00000015612)	SLC5A7 (ENSCPOG00000027203)