Pecora	ANCESTRAL SPECIES	5	ENSGT00940000154295 #9	ENSGT00940000160744 #10	ENSGT00950000183030.m.a.a.a.b #11	ENSGT00940000158977 #12	ENSGT00960000186941	ENSGT00390000006356 #13	ENSGT00940000161020 #14	ENSGT00390000005914.b #15	ENSGT01050000244879.b.a.a #16	ENSGT00940000155063 #17	ENSGT01090000259985.b.b.b.a.a.b #18	ENSGT01090000259985.b.a.b.a.b ##18	ENSGT01090000259985.b.a.b.a.a #19	ENSGT01090000259985.b.a.a.a #20	ENSGT01090000259985.b.b.a.a #21	ENSGT01090000259985.b.b.a.b #22	ENSGT00940000160774 #23	ENSGT00940000156807 #24	ENSGT00940000159390	ENSGT00390000017581.b	ENSGT00940000163665 #26	ENSGT00390000011204 #27	ENSGT00950000183001.a.b.b #28	ENSGT00530000063596.A #29	ENSGT00390000007488 #30	ENSGT00950000183028.a.a.a #31	ENSGT00940000153745.a #33	ENSGT00940000160888	ENSGT00950000182787.C #34	ENSGT00940000159592 #35	ENSGT00390000005656 #37
Percora_a	ANCESTRAL SPECIES	13	ENSGT00940000154295 #9	ENSGT00940000160744 #10	ENSGT00950000183030.m.a.a.a.b #11	ENSGT00940000158977 #12	ENSGT00960000186941	ENSGT00390000006356 #13	ENSGT00940000161020 #14	ENSGT00390000005914.b #15	ENSGT01050000244879.b.a.a #16	ENSGT00940000155063 #17	ENSGT01090000259985.b.b.b.a.a.b #18	ENSGT01090000259985.b.a.b.a.b ##18	ENSGT01090000259985.b.a.b.a.a #19	ENSGT01090000259985.b.a.a.a #20	ENSGT01090000259985.b.b.a.a #21	ENSGT01090000259985.b.b.a.b #22	ENSGT00940000160774 #23	ENSGT00940000156807 #24	ENSGT00940000159390	ENSGT00390000017581.b	ENSGT00940000163665 #26	ENSGT00390000011204 #27	ENSGT00950000183001.a.b.b #28	ENSGT00530000063596.A #29	ENSGT00390000007488 #30	ENSGT00950000183028.a.a.a #31	ENSGT00940000153745.a #33	ENSGT00940000160888	ENSGT00950000182787.C #34	ENSGT00940000159592 #35	ENSGT00390000005656 #37
Bovidae	ANCESTRAL SPECIES	5	ENSGT00940000154295 #9	ENSGT00940000160744 #10	ENSGT00950000183030.m.a.a.a.b #11	ENSGT00940000158977 #12	ENSGT00960000186941	ENSGT00390000006356 #13	ENSGT00940000161020 #14	ENSGT00390000005914.b #15	ENSGT01050000244879.b.a.a #16	ENSGT00940000155063 #17	ENSGT01090000259985.b.b.b.a.a.b #18	ENSGT01090000259985.b.a.b.a.b ##18	ENSGT01090000259985.b.a.b.a.a #19	ENSGT01090000259985.b.a.a.a #20	ENSGT01090000259985.b.b.a.a #21	ENSGT01090000259985.b.b.a.b #22	ENSGT00940000160774 #23	ENSGT00940000156807 #24	ENSGT00940000159390	ENSGT00390000017581.b	ENSGT00940000163665 #26	ENSGT00390000011204 #27	ENSGT00950000183001.a.b.b #28	ENSGT00530000063596.A #29	ENSGT00390000007488 #30	ENSGT00950000183028.a.a.a #31	ENSGT00940000153745.a #33	ENSGT00940000160888	ENSGT00950000182787.C #34	ENSGT00940000159592 #35	ENSGT00390000005656 #37
Caprinae	ANCESTRAL SPECIES	9	ENSGT00940000154295 #9	ENSGT00940000160744 #10	ENSGT00950000183030.m.a.a.a.b #11	ENSGT00940000158977 #12	ENSGT00960000186941	ENSGT00390000006356 #13	ENSGT00940000161020 #14	ENSGT00390000005914.b #15	ENSGT01050000244879.b.a.a #16	ENSGT00940000155063 #17	ENSGT01090000259985.b.b.b.a.a.b #18	ENSGT01090000259985.b.a.b.a.b ##18	ENSGT01090000259985.b.a.b.a.a #19	ENSGT01090000259985.b.a.a.a #20	ENSGT01090000259985.b.b.a.a #21	ENSGT01090000259985.b.b.a.b #22	ENSGT00940000160774 #23	ENSGT00940000156807 #24	ENSGT00940000159390	ENSGT00390000017581.b	ENSGT00940000163665 #26	ENSGT00390000011204 #27	ENSGT00950000183001.a.b.b #28	ENSGT00530000063596.A #29	ENSGT00390000007488 #30	ENSGT00950000183028.a.a.a #31	ENSGT00940000153745.a.e #33	ENSGT00940000153745.a.f ##33	ENSGT00940000160888	ENSGT00950000182787.C #34	ENSGT00940000159592 #35
Rambouillet Sheep	MODERN SPECIES	19	ENSOARG00020012666 #7	CHST10 (ENSOARG00020012569) #8	PDCL3 (ENSOARG00020012507) #9	NPAS2 (ENSOARG00020012376) #10	RPL31 (ENSOARG00020012320) #11	TBC1D8 (ENSOARG00020011910) #12	CNOT11 (ENSOARG00020011860) #13	RNF149 (ENSOARG00020011743) #14	CREG2 (ENSOARG00020011676) #15	RFX8 (ENSOARG00020011330) #16	MAP4K4 (ENSOARG00020003040) #17	IL1R2 (ENSOARG00020002697) #18	IL1RL2 (ENSOARG00020002664) #19	IL1RL1 (ENSOARG00020002640) #20	IL18R1 (ENSOARG00020002611) #21	IL18RAP (ENSOARG00020002600) #22	SLC9A4 (ENSOARG00020002556) #23	SLC9A2 (ENSOARG00020002529) #24	ENSOARG00020002475 #25	POU3F3 (ENSOARG00020002461) #26	MRPS9 (ENSOARG00020002447) #27	GPR45 (ENSOARG00020002442) #28	TGFBRAP1 (ENSOARG00020002401) #29	C2orf49 (ENSOARG00020002379) #30	FHL2 (ENSOARG00020002357) #31	ENSOARG00020002342 #32	TACR1 (ENSOARG00020002316) #33	HK2 (ENSOARG00020002205) #34	SEMA4F (ENSOARG00020002115) #35	ENSOARG00020002088 #36	M1AP (ENSOARG00020002029) #37
Goat	MODERN SPECIES	2	NPAS2 (ENSCHIG00000023402) #10	ENSCHIG00000010413	RPL31 (ENSCHIG00000023850) ##11	TBC1D8 (ENSCHIG00000023795) #12	ENSCHIG00000007252	CNOT11 (ENSCHIG00000026686) #13	RNF149 (ENSCHIG00000024069) #14	CREG2 (ENSCHIG00000010213) #15	RFX8 (ENSCHIG00000011060) #16	MAP4K4 (ENSCHIG00000018604) #17	IL1R2 (ENSCHIG00000024086) #18	IL1R1 (ENSCHIG00000013024) ##18	IL1RL2 (ENSCHIG00000025961) #19	IL1RL1 (ENSCHIG00000017390) #20	IL18R1 (ENSCHIG00000009915) #21	IL18RAP (ENSCHIG00000019718) #22	SLC9A4 (ENSCHIG00000003162) #23	SLC9A2 (ENSCHIG00000017048) #24	MFSD9 (ENSCHIG00000024665)	TMEM182 (ENSCHIG00000021627)	POU3F3 (ENSCHIG00000010081) #26	MRPS9 (ENSCHIG00000022475) #27	ENSCHIG00000025798	GPR45 (ENSCHIG00000010870) #28	TGFBRAP1 (ENSCHIG00000015202) #29	C2orf49 (ENSCHIG00000011684) #30	FHL2 (ENSCHIG00000025140) #31	ENSCHIG00000005412 #33	ENSCHIG00000021615 ##33	POLE4 (ENSCHIG00000023864)	HK2 (ENSCHIG00000012393) #34
Bovinae	ANCESTRAL SPECIES	4	ENSGT00510000049213	ENSGT00940000154295 #9	ENSGT00940000160744 #10	ENSGT00950000183030.m.a.a.a.b #11	ENSGT00940000158977 #12	ENSGT00390000006356 #13	ENSGT00940000161020 #14	ENSGT00390000005914.b #15	ENSGT01050000244879.b.a.a #16	ENSGT00940000155063 #17	ENSGT01090000259985.b.b.b.a.a.b #18	ENSGT01090000259985.b.a.b.a.b ##18	ENSGT01090000259985.b.a.b.a.a #19	ENSGT01090000259985.b.a.a.a #20	ENSGT01090000259985.b.b.a.a #21	ENSGT01090000259985.b.b.a.b #22	ENSGT00940000160774 #23	ENSGT00940000156807 #24	ENSGT00940000159390	ENSGT00390000017581.b	ENSGT00940000163665 #26	ENSGT00390000011204 #27	ENSGT00950000183001.a.b.b #28	ENSGT00530000063596.A #29	ENSGT00390000007488 #30	ENSGT00950000183028.a.a.a #31	ENSGT00940000153745.a #33	ENSGT00940000160888	ENSGT00950000182787.C #34	ENSGT00940000159592 #35	ENSGT00390000005656 #37
Bos	ANCESTRAL SPECIES	5	ENSGT00510000049213	ENSGT00940000154295 #9	ENSGT00940000160744 #10	ENSGT00950000183030.m.a.a.a.b #11	ENSGT00940000158977 #12	ENSGT00390000006356 #13	ENSGT00940000161020 #14	ENSGT00390000005914.b #15	ENSGT01050000244879.b.a.a #16	ENSGT00940000155063 #17	ENSGT01090000259985.b.b.b.a.a.b #18	ENSGT01090000259985.b.a.b.a.b ##18	ENSGT01090000259985.b.a.b.a.a #19	ENSGT01090000259985.b.a.a.a #20	ENSGT01090000259985.b.b.a.a #21	ENSGT01090000259985.b.b.a.b #22	ENSGT00940000160774 #23	ENSGT00940000156807 #24	ENSGT00940000159390	ENSGT00390000017581.b	ENSGT00940000163665 #26	ENSGT00390000011204 #27	ENSGT00950000183001.a.b.b #28	ENSGT00530000063596.A #29	ENSGT00390000007488 #30	ENSGT00950000183028.a.a.a #31	ENSGT00940000153745.a #33	ENSGT00940000160888	ENSGT00950000182787.C #34	ENSGT00940000159592 #35	ENSGT00390000005656 #37
Bos_a	ANCESTRAL SPECIES	6	ENSGT00510000049213	ENSGT00940000154295 #9	ENSGT00940000160744 #10	ENSGT00950000183030.m.a.a.a.b #11	ENSGT00940000158977 #12	ENSGT00390000006356 #13	ENSGT00940000161020 #14	ENSGT00390000005914.b #15	ENSGT01050000244879.b.a.a #16	ENSGT00940000155063 #17	ENSGT01090000259985.b.b.b.a.a.b #18	ENSGT01090000259985.b.a.b.a.b ##18	ENSGT01090000259985.b.a.b.a.a #19	ENSGT01090000259985.b.a.a.a #20	ENSGT01090000259985.b.b.a.a #21	ENSGT01090000259985.b.b.a.b #22	ENSGT00940000160774 #23	ENSGT00940000156807 #24	ENSGT00940000159390	ENSGT00390000017581.b	ENSGT00940000163665 #26	ENSGT00390000011204 #27	ENSGT00950000183001.a.b.b #28	ENSGT00530000063596.A #29	ENSGT00390000007488 #30	ENSGT00950000183028.a.a.a #31	ENSGT00940000153745.a #33	ENSGT00940000160888	ENSGT00950000182787.C #34	ENSGT00940000159592 #35	ENSGT00390000005656 #37
Wild yak	MODERN SPECIES	1144													IL1RL2 (ENSBMUG00000002718) #19	IL1RL1 (ENSBMUG00000002778) #20	IL18R1 (ENSBMUG00000002833) #21	IL18RAP (ENSBMUG00000002892) #22	SLC9A4 (ENSBMUG00000002918) #23	SLC9A2 (ENSBMUG00000002962) #24	MFSD9 (ENSBMUG00000002993)	TMEM182 (ENSBMUG00000003044)	ENSBMUG00000003083 #26	MRPS9 (ENSBMUG00000003193) #27
Domestic yak	MODERN SPECIES	28	NPAS2 (ENSBGRG00000003623) #10	ENSBGRG00000003883	ENSBGRG00000003902 #11	TBC1D8 (ENSBGRG00000004001) #12	CNOT11 (ENSBGRG00000004100) #13	RNF149 (ENSBGRG00000004146) #14	CREG2 (ENSBGRG00000004222) #15	RFX8 (ENSBGRG00000004305) #16	MAP4K4 (ENSBGRG00000004440) #17	IL1R2 (ENSBGRG00000004837) #18	IL1R1 (ENSBGRG00000004895) ##18	ENSBGRG00000004971	IL1RL2 (ENSBGRG00000004988) #19	IL1RL1 (ENSBGRG00000005024) #20	IL18R1 (ENSBGRG00000005129) #21	IL18RAP (ENSBGRG00000005200) #22	SLC9A4 (ENSBGRG00000005286) #23	SLC9A2 (ENSBGRG00000005356) #24	MFSD9 (ENSBGRG00000005489)	TMEM182 (ENSBGRG00000005547)	ENSBGRG00000005713 #26	MRPS9 (ENSBGRG00000005733) #27	GPR45 (ENSBGRG00000005783) #28	TGFBRAP1 (ENSBGRG00000005800) #29	C2orf49 (ENSBGRG00000005902) #30	FHL2 (ENSBGRG00000006023) #31	TACR1 (ENSBGRG00000006090) #33	POLE4 (ENSBGRG00000006127)	HK2 (ENSBGRG00000006169) #34	SEMA4F (ENSBGRG00000006275) #35	M1AP (ENSBGRG00000006523) #37
Bos_b	ANCESTRAL SPECIES	9	ENSGT00510000049213	ENSGT00940000154295 #9	ENSGT00940000160744 #10	ENSGT00950000183030.m.a.a.a.b #11	ENSGT00940000158977 #12	ENSGT00390000006356 #13	ENSGT00940000161020 #14	ENSGT00390000005914.b #15	ENSGT01050000244879.b.a.a #16	ENSGT00940000155063 #17	ENSGT01090000259985.b.b.b.a.a.b #18	ENSGT01090000259985.b.a.b.a.b ##18	ENSGT01090000259985.b.a.b.a.a #19	ENSGT01090000259985.b.a.a.a #20	ENSGT01090000259985.b.b.a.a #21	ENSGT01090000259985.b.b.a.b #22	ENSGT00940000160774 #23	ENSGT00940000156807 #24	ENSGT00940000159390	ENSGT00390000017581.b	ENSGT00940000163665 #26	ENSGT00390000011204 #27	ENSGT00950000183001.a.b.b #28	ENSGT00530000063596.A #29	ENSGT00390000007488 #30	ENSGT00950000183028.a.a.a #31	ENSGT00940000153745.a #33	ENSGT00940000160888	ENSGT00950000182787.C #34	ENSGT00940000159592 #35	ENSGT00390000005656 #37
Hybrid Bos Indicus	MODERN SPECIES	2	ENSBIXG00005013138	NPAS2 (ENSBIXG00005007752) #10	ENSBIXG00005013079	ENSBIXG00005013066 #11	TBC1D8 (ENSBIXG00005001459) #12	CNOT11 (ENSBIXG00005012899) #13	RNF149 (ENSBIXG00005012860) #14	CREG2 (ENSBIXG00005001420) #15	RFX8 (ENSBIXG00005001409) #16	MAP4K4 (ENSBIXG00005012631) #17	IL1R2 (ENSBIXG00005012513) #18	IL1R1 (ENSBIXG00005012489) ##18	IL1RL2 (ENSBIXG00005006426) #19	IL1RL1 (ENSBIXG00005012422) #20	IL18R1 (ENSBIXG00005012403) #21	IL18RAP (ENSBIXG00005001308) #22	SLC9A4 (ENSBIXG00005001305) #23	SLC9A2 (ENSBIXG00005005827) #24	MFSD9 (ENSBIXG00005012287)	TMEM182 (ENSBIXG00005012268)	POU3F3 (ENSBIXG00005012117) #26	MRPS9 (ENSBIXG00005012091) #27	GPR45 (ENSBIXG00005001249) #28	TGFBRAP1 (ENSBIXG00005001243) #29	ENSBIXG00005001221	C2orf49 (ENSBIXG00005011970) #30	FHL2 (ENSBIXG00005001201) #31	TACR1 (ENSBIXG00005011862) #33	POLE4 (ENSBIXG00005011846)	HK2 (ENSBIXG00005001173) #34	SEMA4F (ENSBIXG00005011754) #35
Cow	MODERN SPECIES	2	NMS (ENSBTAG00000034184)	PDCL3 (ENSBTAG00000009962) #9	NPAS2 (ENSBTAG00000019697) #10	TBC1D8 (ENSBTAG00000025898) #12	CNOT11 (ENSBTAG00000008267) #13	RNF149 (ENSBTAG00000008269) #14	CREG2 (ENSBTAG00000021161) #15	RFX8 (ENSBTAG00000033998) #16	ENSBTAG00000054755	MAP4K4 (ENSBTAG00000013023) #17	IL1R2 (ENSBTAG00000006343) #18	IL1R1 (ENSBTAG00000005273) ##18	IL1RL2 (ENSBTAG00000005704) #19	IL1RL1 (ENSBTAG00000018571) #20	IL18R1 (ENSBTAG00000001034) #21	IL18RAP (ENSBTAG00000033748) #22	SLC9A4 (ENSBTAG00000024075) #23	SLC9A2 (ENSBTAG00000001706) #24	MFSD9 (ENSBTAG00000001714)	TMEM182 (ENSBTAG00000038462)	POU3F3 (ENSBTAG00000050523) #26	MRPS9 (ENSBTAG00000006150) #27	GPR45 (ENSBTAG00000048142) #28	TGFBRAP1 (ENSBTAG00000021731) #29	C11H2orf49 (ENSBTAG00000012332) #30	FHL2 (ENSBTAG00000001086) #31	TACR1 (ENSBTAG00000015575) #33	POLE4 (ENSBTAG00000017189)	HK2 (ENSBTAG00000013108) #34	SEMA4F (ENSBTAG00000006989) #35	M1AP (ENSBTAG00000006988) #37
American bison	MODERN SPECIES	3359	NMS (ENSBBBG00000022959)	PDCL3 (ENSBBBG00000022953) #9	NPAS2 (ENSBBBG00000022942) #10	ENSBBBG00000022904 #11	TBC1D8 (ENSBBBG00000022871) #12	CNOT11 (ENSBBBG00000022819) #13	RNF149 (ENSBBBG00000022804) #14	CREG2 (ENSBBBG00000006004) #15	RFX8 (ENSBBBG00000008792) #16	MAP4K4 (ENSBBBG00000022681) #17	IL1R2 (ENSBBBG00000021615) #18	IL1R1 (ENSBBBG00000021590) ##18	IL1RL2 (ENSBBBG00000021531) #19	IL1RL1 (ENSBBBG00000021510) #20	IL18R1 (ENSBBBG00000008404) #21	IL18RAP (ENSBBBG00000021455) #22	SLC9A4 (ENSBBBG00000021388) #23	SLC9A2 (ENSBBBG00000021364) #24	ENSBBBG00000008785	TMEM182 (ENSBBBG00000021321)	ENSBBBG00000021300 #26	MRPS9 (ENSBBBG00000021295) #27	GPR45 (ENSBBBG00000021287) #28	TGFBRAP1 (ENSBBBG00000007633) #29	C2orf49 (ENSBBBG00000021257) #30	FHL2 (ENSBBBG00000021230) #31	TACR1 (ENSBBBG00000007280) #33	HK2 (ENSBBBG00000021179) #34	SEMA4F (ENSBBBG00000021134) #35	M1AP (ENSBBBG00000005650) #37	DOK1 (ENSBBBG00000005634)
Siberian musk deer	MODERN SPECIES	245	ENSMMSG00000001724 #9	ENSMMSG00000001713	NPAS2 (ENSMMSG00000001642) #10	ENSMMSG00000001578 #11	TBC1D8 (ENSMMSG00000001494) #12	CNOT11 (ENSMMSG00000001455) #13	RNF149 (ENSMMSG00000001408) #14	CREG2 (ENSMMSG00000001384) #15	RFX8 (ENSMMSG00000001356) #16	MAP4K4 (ENSMMSG00000001158) #17	IL1R2 (ENSMMSG00000001036) #18	IL1R1 (ENSMMSG00000000980) ##18	IL1RL2 (ENSMMSG00000000923) #19	IL1RL1 (ENSMMSG00000000795) #20	IL18R1 (ENSMMSG00000000733) #21	IL18RAP (ENSMMSG00000000698) #22	SLC9A4 (ENSMMSG00000000659) #23	SLC9A2 (ENSMMSG00000000626) #24	MFSD9 (ENSMMSG00000000598)	TMEM182 (ENSMMSG00000000564)	ENSMMSG00000000543	POU3F3 (ENSMMSG00000000528) #26	MRPS9 (ENSMMSG00000000500) #27	GPR45 (ENSMMSG00000000484) #28	TGFBRAP1 (ENSMMSG00000000447) #29	C2orf49 (ENSMMSG00000000414) #30	FHL2 (ENSMMSG00000000375) #31	TACR1 (ENSMMSG00000000340) #33	ENSMMSG00000000316	HK2 (ENSMMSG00000000268) #34	SEMA4F (ENSMMSG00000015865) #35
Yarkand deer	MODERN SPECIES	2	NPAS2 (ENSCHYG00000011537) #10	ENSCHYG00000011833 ##11	TBC1D8 (ENSCHYG00000011938) #12	ENSCHYG00000012198	CNOT11 (ENSCHYG00000012215) #13	RNF149 (ENSCHYG00000012281) #14	CREG2 (ENSCHYG00000012391) #15	RFX8 (ENSCHYG00000012449) #16	ENSCHYG00000012737	MAP4K4 (ENSCHYG00000012853) #17	IL1R2 (ENSCHYG00000014817) #18	IL1R1 (ENSCHYG00000015042) ##18	IL1RL2 (ENSCHYG00000015248) #19	IL1RL1 (ENSCHYG00000015743) #20	IL18R1 (ENSCHYG00000015824) #21	IL18RAP (ENSCHYG00000015955) #22	SLC9A4 (ENSCHYG00000016105) #23	SLC9A2 (ENSCHYG00000016251) #24	MFSD9 (ENSCHYG00000016403)	TMEM182 (ENSCHYG00000016473)	ENSCHYG00000016649	MRPS9 (ENSCHYG00000016692) #27	GPR45 (ENSCHYG00000016902) #28	TGFBRAP1 (ENSCHYG00000016916) #29	ENSCHYG00000017002 #30	FHL2 (ENSCHYG00000017139) #31	TACR1 (ENSCHYG00000006500) #33	POLE4 (ENSCHYG00000006517)	HK2 (ENSCHYG00000006578) #34	SEMA4F (ENSCHYG00000006815) #35	M1AP (ENSCHYG00000006904) #37