Rodentia_A	ANCESTRAL SPECIES	14	ENSGT00940000156374	ENSGT00950000182974.a.a.a.b	ENSGT00440000033329.b.a.a	ENSGT00940000157128	ENSGT00510000049213	ENSGT00940000154295	ENSGT00940000160744	ENSGT00950000183030.m.a.a.a.b	ENSGT00940000158977	ENSGT00390000006356 #16	ENSGT00940000161020 #17	ENSGT00390000005914.b #18	ENSGT01050000244879.b.a.a #19	ENSGT00940000155063 #20	ENSGT01090000259985.b.b.b.a.a.b #21	ENSGT01090000259985.b.a.b.a.b #22	ENSGT01090000259985.b.a.b.a.a #23	ENSGT01090000259985.b.a.a.a #24	ENSGT01090000259985.b.b.a.a #25	ENSGT01090000259985.b.b.a.b ##25	ENSGT00940000160774 #26	ENSGT00940000156807 #27	ENSGT00940000159390 #28	ENSGT00390000017581.b #29	ENSGT00940000163665	ENSGT00390000011204	ENSGT00950000183001.a.b.b	ENSGT00530000063596.A	ENSGT00390000007488	ENSGT00950000183028.a.a.a	ENSGT00940000157728.b
Sciuridae	ANCESTRAL SPECIES	61										ENSGT00390000006356 #16	ENSGT00940000161020 #17	ENSGT00390000005914.b #18	ENSGT01050000244879.b.a.a #19	ENSGT00940000155063 #20	ENSGT01090000259985.b.b.b.a.a.b #21	ENSGT01090000259985.b.a.b.a.b #22	ENSGT01090000259985.b.a.b.a.a #23	ENSGT01090000259985.b.a.a.a #24	ENSGT01090000259985.b.b.a.a #25	ENSGT01090000259985.b.b.a.b ##25	ENSGT00940000160774 #26	ENSGT00940000156807 #27	ENSGT00940000159390 #28	ENSGT00390000017581.b #29	ENSGT00940000163665	ENSGT00390000011204	ENSGT00950000183001.a.b.b	ENSGT00530000063596.A	ENSGT00390000007488	ENSGT00950000183028.a.a.a	ENSGT00940000157728.b
Marmotini	ANCESTRAL SPECIES	103										ENSGT00390000006356 #16	ENSGT00940000161020 #17	ENSGT00390000005914.b #18	ENSGT01050000244879.b.a.a #19	ENSGT00940000155063 #20	ENSGT01090000259985.b.b.b.a.a.b #21	ENSGT01090000259985.b.a.b.a.b #22	ENSGT01090000259985.b.a.b.a.a #23	ENSGT01090000259985.b.a.a.a #24	ENSGT01090000259985.b.b.a.a #25	ENSGT01090000259985.b.b.a.b ##25	ENSGT00940000160774 #26	ENSGT00940000156807 #27	ENSGT00940000159390 #28	ENSGT00390000017581.b #29	ENSGT00390000011204	ENSGT00950000183001.a.b.b	ENSGT00530000063596.A	ENSGT00390000007488	ENSGT00950000183028.a.a.a	ENSGT00940000157728.b	ENSGT00390000000145
Marmotini_b	ANCESTRAL SPECIES	214										ENSGT00390000006356 #16	ENSGT00940000161020 #17	ENSGT00390000005914.b #18	ENSGT01050000244879.b.a.a #19	ENSGT00940000155063 #20	ENSGT01090000259985.b.b.b.a.a.b #21	ENSGT01090000259985.b.a.b.a.b #22	ENSGT01090000259985.b.a.b.a.a #23	ENSGT01090000259985.b.a.a.a #24	ENSGT01090000259985.b.b.a.a #25	ENSGT01090000259985.b.b.a.b ##25	ENSGT00940000160774 #26	ENSGT00940000156807 #27	ENSGT00940000159390 #28	ENSGT00390000017581.b #29
Squirrel	MODERN SPECIES	313										CNOT11 (ENSSTOG00000002674) #16	RNF149 (ENSSTOG00000002701) #17	CREG2 (ENSSTOG00000005261) #18	RFX8 (ENSSTOG00000005252) #19	MAP4K4 (ENSSTOG00000012689) #20	IL1R2 (ENSSTOG00000008491) #21	IL1R1 (ENSSTOG00000022224) #22	IL1RL2 (ENSSTOG00000004136) #23	IL1RL1 (ENSSTOG00000004162) #24	IL18R1 (ENSSTOG00000004181) #25	SLC9A4 (ENSSTOG00000004218) #26	SLC9A2 (ENSSTOG00000004249) #27	MFSD9 (ENSSTOG00000026538) #28	TMEM182 (ENSSTOG00000021121) #29
Arctic ground squirrel	MODERN SPECIES	389									CNOT11 (ENSUPAG00010008934) #16	RNF149 (ENSUPAG00010008945) #17	ENSUPAG00010008977	CREG2 (ENSUPAG00010008997) #18	RFX8 (ENSUPAG00010009009) #19	MAP4K4 (ENSUPAG00010009052) #20	IL1R2 (ENSUPAG00010010625) #21	IL1R1 (ENSUPAG00010010814) #22	IL1RL2 (ENSUPAG00010010855) #23	ENSUPAG00010010880 #24	IL18R1 (ENSUPAG00010010899) #25	IL18RAP (ENSUPAG00010010926) ##25	SLC9A4 (ENSUPAG00010010967) #26	SLC9A2 (ENSUPAG00010010983) #27	MFSD9 (ENSUPAG00010011005) #28	TMEM182 (ENSUPAG00010011013) #29
Alpin marmot	MODERN SPECIES	99										CNOT11 (ENSMMMG00000019519) #16	ENSMMMG00000019511 #17	CREG2 (ENSMMMG00000019502) #18	RFX8 (ENSMMMG00000019489) #19	MAP4K4 (ENSMMMG00000019140) #20	IL1R2 (ENSMMMG00000019123) #21	IL1R1 (ENSMMMG00000019096) #22	IL1RL2 (ENSMMMG00000019064) #23	IL1RL1 (ENSMMMG00000019023) #24	IL18R1 (ENSMMMG00000018982) #25	IL18RAP (ENSMMMG00000018945) ##25	SLC9A4 (ENSMMMG00000018936) #26	SLC9A2 (ENSMMMG00000018920) #27	MFSD9 (ENSMMMG00000018912) #28	TMEM182 (ENSMMMG00000018908) #29	MRPS9 (ENSMMMG00000018867)	GPR45 (ENSMMMG00000018860)	TGFBRAP1 (ENSMMMG00000018810)	C2orf49 (ENSMMMG00000018804)	FHL2 (ENSMMMG00000018792)	NCK2 (ENSMMMG00000018747)	ECRG4 (ENSMMMG00000018736)
Eurasian red squirrel	MODERN SPECIES	5	ENSSVLG00005017814	SLC5A7 (ENSSVLG00005017705)	ENSSVLG00005017658	ENSSVLG00005017620	ENSSVLG00005017536	ENSSVLG00005017486	ENSSVLG00005017437	ENSSVLG00005017192	ENSSVLG00005017114	CNOT11 (ENSSVLG00005017020) #16	RNF149 (ENSSVLG00005016973) #17	CREG2 (ENSSVLG00005016917) #18	RFX8 (ENSSVLG00005016773) #19	MAP4K4 (ENSSVLG00005016510) #20	IL1R2 (ENSSVLG00005016305) #21	IL1R1 (ENSSVLG00005016023) #22	IL1RL2 (ENSSVLG00005015833) #23	ENSSVLG00005015618 #24	IL18R1 (ENSSVLG00005015483) #25	IL18RAP (ENSSVLG00005015196) ##25	SLC9A4 (ENSSVLG00005015058) #26	SLC9A2 (ENSSVLG00005014903) #27	MFSD9 (ENSSVLG00005014829) #28	TMEM182 (ENSSVLG00005014677) #29	POU3F3 (ENSSVLG00005014648)	MRPS9 (ENSSVLG00005014535)	GPR45 (ENSSVLG00005014512)	TGFBRAP1 (ENSSVLG00005014478)	C2orf49 (ENSSVLG00005014398)	FHL2 (ENSSVLG00005014354)	NCK2 (ENSSVLG00005014324)
Hystricomorpha	ANCESTRAL SPECIES	8	ENSGT00940000162583	ENSGT00940000156374	ENSGT00950000182974.a.a.a.b	ENSGT00940000157128	ENSGT00510000049213	ENSGT00940000154295	ENSGT00940000160744	ENSGT00950000183030.m.a.a.a.b	ENSGT00940000158977	ENSGT00390000006356 #16	ENSGT00940000161020 #17	ENSGT00390000005914.b #18	ENSGT01050000244879.b.a.a #19	ENSGT00940000155063 #20	ENSGT01090000259985.b.b.b.a.a.b #21	ENSGT01090000259985.b.a.b.a.b #22	ENSGT01090000259985.b.a.b.a.a #23	ENSGT01090000259985.b.a.a.a #24	ENSGT01090000259985.b.b.a.a #25	ENSGT01090000259985.b.b.a.b ##25	ENSGT00940000160774 #26	ENSGT00940000156807 #27	ENSGT00940000159390 #28	ENSGT00390000017581.b #29	ENSGT00940000163665	ENSGT00390000011204	ENSGT00950000183001.a.b.b	ENSGT00530000063596.A	ENSGT00390000007488	ENSGT00950000183028.a.a.a	ENSGT00940000157728.b
Hystricomorpha_a	ANCESTRAL SPECIES	52	ENSGT00940000162583	ENSGT00940000156374	ENSGT00950000182974.a.a.a.b	ENSGT00940000157128	ENSGT00510000049213	ENSGT00940000154295	ENSGT00940000160744	ENSGT00950000183030.m.a.a.a.b	ENSGT00940000158977	ENSGT00390000006356 #16	ENSGT00940000161020 #17	ENSGT00390000005914.b #18	ENSGT01050000244879.b.a.a #19	ENSGT00940000155063 #20	ENSGT01090000259985.b.b.b.a.a.b #21	ENSGT01090000259985.b.a.b.a.b #22	ENSGT01090000259985.b.a.b.a.a #23	ENSGT01090000259985.b.a.a.a #24	ENSGT01090000259985.b.b.a.a #25	ENSGT01090000259985.b.b.a.b ##25	ENSGT00940000160774 #26	ENSGT00940000156807 #27	ENSGT00940000159390 #28	ENSGT00390000017581.b #29	ENSGT00940000163665	ENSGT00390000011204	ENSGT00950000183001.a.b.b	ENSGT00530000063596.A	ENSGT00390000007488	ENSGT00950000183028.a.a.a	ENSGT00940000157728.b
Guinea pig	MODERN SPECIES	24	ENSCPOG00000011967	REV1 (ENSCPOG00000011981)	AFF3 (ENSCPOG00000006346)	CHST10 (ENSCPOG00000006356)	NMS (ENSCPOG00000004100)	PDCL3 (ENSCPOG00000033717)	ENSCPOG00000034101	ENSCPOG00000021031	TBC1D8 (ENSCPOG00000027502)	CNOT11 (ENSCPOG00000012029) #16	RNF149 (ENSCPOG00000022648) #17	CREG2 (ENSCPOG00000010561) #18	RFX8 (ENSCPOG00000002640) #19	MAP4K4 (ENSCPOG00000011630) #20	IL1R2 (ENSCPOG00000037563) #21	IL1R1 (ENSCPOG00000032016) #22	IL1RL2 (ENSCPOG00000003204) #23	IL1RL1 (ENSCPOG00000013443) #24	IL18R1 (ENSCPOG00000022527) #25	IL18RAP (ENSCPOG00000014120) ##25	SLC9A4 (ENSCPOG00000033768) #26	SLC9A2 (ENSCPOG00000007613) #27	MFSD9 (ENSCPOG00000035138) #28	TMEM182 (ENSCPOG00000007626) #29	ENSCPOG00000003373	MRPS9 (ENSCPOG00000013967)	GPR45 (ENSCPOG00000035701)	TGFBRAP1 (ENSCPOG00000001606)	C2orf49 (ENSCPOG00000034878)	FHL2 (ENSCPOG00000035187)	NCK2 (ENSCPOG00000025206)
Hystricomorpha_b	ANCESTRAL SPECIES	59	ENSGT00940000156374	ENSGT00950000182974.a.a.a.b	ENSGT00940000157128	ENSGT00510000049213	ENSGT00940000154295.o	ENSGT00940000160744	ENSGT00950000183030.m.a.a.b.b.a.a.b	ENSGT00950000183030.m.a.a.b.b.a.b.b.b	ENSGT00940000158977	ENSGT00390000006356 #16	ENSGT00940000161020 #17	ENSGT00390000005914.b #18	ENSGT01050000244879.b.a.a #19	ENSGT00940000155063 #20	ENSGT01090000259985.b.b.b.a.a.b #21	ENSGT01090000259985.b.a.b.a.b #22	ENSGT01090000259985.b.a.b.a.a #23	ENSGT01090000259985.b.a.a.a #24	ENSGT01090000259985.b.b.a.a #25	ENSGT01090000259985.b.b.a.b ##25	ENSGT00940000160774 #26	ENSGT00940000156807 #27	ENSGT00940000159390 #28	ENSGT00390000017581.b #29	ENSGT00940000163665	ENSGT00390000011204	ENSGT00950000183001.a.b.b	ENSGT00530000063596.A	ENSGT00390000007488	ENSGT00950000183028.a.a.a	ENSGT00940000157728.b
Degu	MODERN SPECIES	93	ENSODEG00000008333	REV1 (ENSODEG00000008237)	ENSODEG00000007806	ENSODEG00000010897	CHST10 (ENSODEG00000008815)	NMS (ENSODEG00000007962)	ENSODEG00000007395	ENSODEG00000009555	ENSODEG00000007744	TBC1D8 (ENSODEG00000010987)	ENSODEG00000009367	CNOT11 (ENSODEG00000007133) #16	CREG2 (ENSODEG00000008331) #18	RFX8 (ENSODEG00000008257) #19	MAP4K4 (ENSODEG00000007726) #20	IL1R1 (ENSODEG00000009505) #22	IL1RL2 (ENSODEG00000008598) #23	IL1RL1 (ENSODEG00000007332) #24	IL18R1 (ENSODEG00000007946) #25	SLC9A4 (ENSODEG00000010039) #26	SLC9A2 (ENSODEG00000011273) #27	MFSD9 (ENSODEG00000008325) #28	TMEM182 (ENSODEG00000009218) #29	POU3F3 (ENSODEG00000008245)	MRPS9 (ENSODEG00000008818)	GPR45 (ENSODEG00000019888)	ENSODEG00000008779	C2orf49 (ENSODEG00000009180)	FHL2 (ENSODEG00000008211)	NCK2 (ENSODEG00000008391)	ECRG4 (ENSODEG00000007923)
Long-tailed chinchilla	MODERN SPECIES	177	TXNDC9 (ENSCLAG00000006644)	EIF5B (ENSCLAG00000007674)	REV1 (ENSCLAG00000009243)	AFF3 (ENSCLAG00000017100)	CHST10 (ENSCLAG00000003206)	NMS (ENSCLAG00000004166)	ENSCLAG00000004610	NPAS2 (ENSCLAG00000006228)	RPL31 (ENSCLAG00000006775)	TBC1D8 (ENSCLAG00000013253)	ENSCLAG00000014249 #16	ENSCLAG00000008966 #17	RFX8 (ENSCLAG00000009461) #19	MAP4K4 (ENSCLAG00000008989) #20	IL1R2 (ENSCLAG00000003202) #21	ENSCLAG00000003425 #22	IL1RL2 (ENSCLAG00000003870) #23	ENSCLAG00000004065 #24	IL18R1 (ENSCLAG00000004416) #25	IL18RAP (ENSCLAG00000005267) ##25	SLC9A4 (ENSCLAG00000005526) #26	SLC9A2 (ENSCLAG00000004660) #27	MFSD9 (ENSCLAG00000004767) #28	TMEM182 (ENSCLAG00000004968) #29	MRPS9 (ENSCLAG00000005209)	GPR45 (ENSCLAG00000017756)	TGFBRAP1 (ENSCLAG00000005507)	C2orf49 (ENSCLAG00000005595)	FHL2 (ENSCLAG00000008685)	NCK2 (ENSCLAG00000008756)	ECRG4 (ENSCLAG00000008845)
Naked mole-rat female	MODERN SPECIES	23	PDCL3 (ENSHGLG00000038612)	ENSHGLG00000050067	ENSHGLG00000010608	NPAS2 (ENSHGLG00000015275)	RPL31 (ENSHGLG00000034864)	TBC1D8 (ENSHGLG00000005052)	CNOT11 (ENSHGLG00000005196) #16	CREG2 (ENSHGLG00000045007) #18	RFX8 (ENSHGLG00000009282) #19	MAP4K4 (ENSHGLG00000010571) #20	ENSHGLG00000041789	IL1R2 (ENSHGLG00000014764) #21	ENSHGLG00000042381	ENSHGLG00000036054	ENSHGLG00000046327	IL1R1 (ENSHGLG00000035160) #22	IL1RL2 (ENSHGLG00000006830) #23	IL1RL1 (ENSHGLG00000009148) #24	IL18R1 (ENSHGLG00000014630) #25	IL18RAP (ENSHGLG00000040342) ##25	SLC9A4 (ENSHGLG00000015136) #26	SLC9A2 (ENSHGLG00000016134) #27	ENSHGLG00000036196 #28	TMEM182 (ENSHGLG00000048689) #29	ENSHGLG00000004651	ENSHGLG00000047894	POU3F3 (ENSHGLG00000049835)	MRPS9 (ENSHGLG00000011532)	GPR45 (ENSHGLG00000011855)	TGFBRAP1 (ENSHGLG00000012207)	C2orf49 (ENSHGLG00000009244)