Rodentia	ANCESTRAL SPECIES	22	ENSGT01060000248594.e.b #7	ENSGT00530000063860.b #8	ENSGT00390000013549.a.a #10	ENSGT00940000170406	ENSGT00950000183130.B #12	ENSGT00940000153481.C #13	ENSGT00940000154391.a.b #14	ENSGT00390000006573 #15	ENSGT00390000016881 #16	ENSGT00940000157940 #17	ENSGT00390000012235 #18	ENSGT00390000011174 #19	ENSGT00390000016050	ENSGT00940000154956 #20	ENSGT00940000154934.B #21	ENSGT01050000244827.C.c.a.b #22	ENSGT00550000075006 #24	ENSGT00950000183061.a.a.b	ENSGT00940000157614	ENSGT00940000157257	ENSGT00940000161440	ENSGT00940000165080	ENSGT00940000161564	ENSGT00390000003602	ENSGT00390000012305.b	ENSGT00610000086058.b	ENSGT00940000158948.b	ENSGT00940000155499	ENSGT00940000159635	ENSGT00940000162967	ENSGT00390000009484
Rodentia_B	ANCESTRAL SPECIES	25	ENSGT00530000063860.b #8	ENSGT00390000013549.a.a #10	ENSGT00390000013549.a.b.b #11	ENSGT00940000170406	ENSGT00950000183130.B #12	ENSGT00940000153481.C #13	ENSGT00940000154391.a.b #14	ENSGT00390000006573 #15	ENSGT00390000016881 #16	ENSGT00940000157940 #17	ENSGT00390000012235 #18	ENSGT00390000011174 #19	ENSGT00390000016050	ENSGT00940000154956 #20	ENSGT00940000154934.B #21	ENSGT01050000244827.C.c.a.b #22	ENSGT00550000075006 #24	ENSGT00950000183061.a.a.b	ENSGT00940000157614	ENSGT00940000157257	ENSGT00940000161440	ENSGT00900000143638	ENSGT00940000161564	ENSGT00390000003602	ENSGT00390000012305.b	ENSGT00610000086058.b	ENSGT00940000158948.b	ENSGT00940000155499	ENSGT00940000159635	ENSGT00940000162967	ENSGT00390000009484
Kangaroo rat	MODERN SPECIES	459	Trpc4 (ENSDORG00000009242) #7	Postn (ENSDORG00000009240) #8	ENSDORG00000030136 #9	ENSDORG00000011064 #10	ENSDORG00000024867 #11	Exosc8 (ENSDORG00000011062) #12	Alg5 (ENSDORG00000009002) #13	Smad9 (ENSDORG00000002526) #14	Rfxap (ENSDORG00000002523) #15	Sertm1 (ENSDORG00000008829) #16	Ccna1 (ENSDORG00000001195) #17	Spg20 (ENSDORG00000003874) #18	Ccdc169 (ENSDORG00000026608) #19	Dclk1 (ENSDORG00000002991) #20	Nbea (ENSDORG00000005154) #21	Mab21l1 (ENSDORG00000023496) #22	ENSDORG00000028484 #23	Rfc3 (ENSDORG00000009109) #24
Myomorpha	ANCESTRAL SPECIES	46	ENSGT00530000063860.b #8	ENSGT00390000013549.a.a #10	ENSGT00390000013549.a.b.b #11	ENSGT00940000170406	ENSGT00950000183130.B #12	ENSGT00940000153481.C #13	ENSGT00940000154391.a.b #14	ENSGT00390000006573 #15	ENSGT00390000016881 #16	ENSGT00940000157940 #17	ENSGT00390000012235 #18	ENSGT00390000011174 #19	ENSGT00390000016050	ENSGT00940000154956 #20	ENSGT00940000154934.B #21	ENSGT01050000244827.C.c.a.b #22	ENSGT00550000075006 #24	ENSGT00950000183061.a.a.b.ib	ENSGT00940000157614	ENSGT00940000157257	ENSGT00940000161440	ENSGT00900000143638	ENSGT00940000161564	ENSGT00390000003602	ENSGT00390000012305.b	ENSGT00610000086058.b	ENSGT00940000158948.b	ENSGT00940000155499	ENSGT00940000159635	ENSGT00940000162967	ENSGT00390000009484
Lesser Egyptian jerboa	MODERN SPECIES	73	Frem2 (ENSJJAG00000015873)	ENSJJAG00000011258	Trpc4 (ENSJJAG00000002682) #7	Postn (ENSJJAG00000017264) #8	ENSJJAG00000021272	ENSJJAG00000018142 #10	ENSJJAG00000011245 #11	ENSJJAG00000022752 #12	Alg5 (ENSJJAG00000023125) #13	Smad9 (ENSJJAG00000010404) #14	Ccna1 (ENSJJAG00000024004) #17	Sertm1 (ENSJJAG00000012642) #16	Spg20 (ENSJJAG00000023993) #18	Ccdc169 (ENSJJAG00000021324) #19	Dclk1 (ENSJJAG00000016300) #20	Mab21l1 (ENSJJAG00000012819) #22	Nbea (ENSJJAG00000016039) #21	ENSJJAG00000020715	Rfc3 (ENSJJAG00000013164) #24	Stard13 (ENSJJAG00000016848)	Kl (ENSJJAG00000004906)	Pds5b (ENSJJAG00000023181)	ENSJJAG00000007334	N4bp2l1 (ENSJJAG00000022228)	ENSJJAG00000024080	Zar1l (ENSJJAG00000023916)	Fry (ENSJJAG00000021715)	Rxfp2 (ENSJJAG00000022592)	B3glct (ENSJJAG00000022078)	Hsph1 (ENSJJAG00000000436)	Wdr95 (ENSJJAG00000015306)
Muroidea	ANCESTRAL SPECIES	80	ENSGT00390000010391	ENSGT01060000248594.e.b #7	ENSGT00530000063860.b #8	ENSGT00390000013549.a.a #10	ENSGT00950000183130.B #12	ENSGT00940000153481.C #13	ENSGT00940000154391.a.b #14	ENSGT00390000006573 #15	ENSGT00390000016881 #16	ENSGT00940000157940 #17	ENSGT00390000012235 #18	ENSGT00390000011174 #19	ENSGT00390000016050	ENSGT00940000154956 #20	ENSGT00940000154934.B #21	ENSGT01050000244827.C.c.a.b #22
Muroidea_A	ANCESTRAL SPECIES	5	ENSGT00390000010391	ENSGT01060000248594.e.b #7	ENSGT00530000063860.b #8	ENSGT00390000013549.a.a #10	ENSGT00950000183130.B #12	ENSGT00940000153481.C #13	ENSGT00940000154391.a.b #14	ENSGT00390000006573 #15	ENSGT00390000016881 #16	ENSGT00940000157940 #17	ENSGT00390000012235 #18	ENSGT00390000011174 #19	ENSGT00390000016050	ENSGT00940000154956 #20	ENSGT00940000154934.B #21	ENSGT01050000244827.C.c.a.b #22	ENSGT01030000234590.A.b.a.b.a	ENSGT01030000234590.A.b.b	ENSGT00510000046760.b	ENSGT00390000008489	ENSGT00390000007965	ENSGT00940000154942.h	ENSGT00940000153664.B	ENSGT00940000160465	ENSGT00940000161729	ENSGT00730000111053	ENSGT00390000011725.d	ENSGT00940000153655.A.b	ENSGT00940000159812	ENSGT00940000162644	ENSGT00850000132319.a.a.a
Cricetidae	ANCESTRAL SPECIES	6	ENSGT00390000010391	ENSGT01060000248594.e.b #7	ENSGT00530000063860.b #8	ENSGT00390000013549.a.a #10	ENSGT00950000183130.B #12	ENSGT00940000153481.C #13	ENSGT00940000154391.a.b #14	ENSGT00390000006573 #15	ENSGT00390000016881 #16	ENSGT00940000157940 #17	ENSGT00390000012235 #18	ENSGT00390000011174 #19	ENSGT00390000016050	ENSGT00940000154956 #20	ENSGT00940000154934.B #21	ENSGT01050000244827.C.c.a.b #22	ENSGT01030000234590.A.b.a.b.a	ENSGT01030000234590.A.b.b	ENSGT00510000046760.b	ENSGT00390000008489	ENSGT00390000007965	ENSGT00940000154942.h	ENSGT00940000153664.B	ENSGT00940000160465	ENSGT00940000161729	ENSGT00730000111053	ENSGT00390000011725.d	ENSGT00940000153655.A.b	ENSGT00940000159812	ENSGT00940000162644	ENSGT00850000132319.a.a.a
Cricetinae	ANCESTRAL SPECIES	13	ENSGT00390000010391	ENSGT01060000248594.e.b #7	ENSGT00530000063860.b #8	ENSGT00390000013549.a.a #10	ENSGT00950000183130.B #12	ENSGT00940000153481.C #13	ENSGT00940000154391.a.b #14	ENSGT00390000006573 #15	ENSGT00390000016881 #16	ENSGT00940000157940 #17	ENSGT00390000012235 #18	ENSGT00390000011174 #19	ENSGT00390000016050	ENSGT00940000154956 #20	ENSGT00940000154934.B #21	ENSGT01050000244827.C.c.a.b #22	ENSGT01030000234590.A.b.a.b.a	ENSGT01030000234590.A.b.b	ENSGT00510000046760.b	ENSGT00390000008489	ENSGT00390000007965	ENSGT00940000154942.h	ENSGT00940000153664.B	ENSGT00940000160465	ENSGT00940000161729	ENSGT00730000111053	ENSGT00390000011725.d	ENSGT00940000153655.A.b	ENSGT00940000159812	ENSGT00850000132319.a.a.a	ENSGT00440000037505.a
Golden Hamster	MODERN SPECIES	694												ENSMAUG00000017412 #20	ENSMAUG00000007158 #20	ENSMAUG00000014102	Nbea (ENSMAUG00000013634) #21	Mab21l1 (ENSMAUG00000017429) #22	Tm4sf1 (ENSMAUG00000001227)	Wwtr1 (ENSMAUG00000000290)	Ankub1 (ENSMAUG00000007208)	Rnf13 (ENSMAUG00000013930)	Pfn2 (ENSMAUG00000016863)	ENSMAUG00000014395	Serp1 (ENSMAUG00000016106)	Eif2a (ENSMAUG00000017191)	Selenot (ENSMAUG00000010335)	Erich6 (ENSMAUG00000013263)	Siah2 (ENSMAUG00000002030)	Clrn1 (ENSMAUG00000008258)	Med12l (ENSMAUG00000020909)	Gpr171 (ENSMAUG00000017472)	P2ry14 (ENSMAUG00000007404)
Chinese hamster chok1gshd	MODERN SPECIES	352	ENSCGRG00001016565	Trpc4 (ENSCGRG00001022303) #7	Postn (ENSCGRG00001022267) #8	Supt20 (ENSCGRG00001018857) #10	Exosc8 (ENSCGRG00001012262) #12	ENSCGRG00001022326	Alg5 (ENSCGRG00001018711) #13	Smad9 (ENSCGRG00001015815) #14	Rfxap (ENSCGRG00001017082) #15	Sertm1 (ENSCGRG00001005414) #16	Ccna1 (ENSCGRG00001015009) #17	Spg20 (ENSCGRG00001020099) #18	Ccdc169 (ENSCGRG00001010072) #19	Sohlh2 (ENSCGRG00001022579)	Dclk1 (ENSCGRG00001010497) #20	Mab21l1 (ENSCGRG00001011548) #22	Nbea (ENSCGRG00001019938) #21	Tm4sf1 (ENSCGRG00001024455)	Tm4sf4 (ENSCGRG00001005493)	Wwtr1 (ENSCGRG00001023807)	Commd2 (ENSCGRG00001019990)	Ankub1 (ENSCGRG00001000580)	Rnf13 (ENSCGRG00001018992)	Pfn2 (ENSCGRG00001018043)	Tsc22d2 (ENSCGRG00001016876)	Serp1 (ENSCGRG00001012974)	Eif2a (ENSCGRG00001016171)	Selenot (ENSCGRG00001001287)	Siah2 (ENSCGRG00001024133)	ENSCGRG00001006977	Clrn1 (ENSCGRG00001004576)
Cricetidae_B	ANCESTRAL SPECIES	3	ENSGT00390000010391	ENSGT01060000248594.e.b #7	ENSGT00530000063860.b #8	ENSGT00390000013549.a.a #10	ENSGT00950000183130.B #12	ENSGT00940000153481.C #13	ENSGT00940000154391.a.b #14	ENSGT00390000006573 #15	ENSGT00390000016881 #16	ENSGT00940000157940 #17	ENSGT00390000012235 #18	ENSGT00390000011174 #19	ENSGT00390000016050	ENSGT00940000154956 #20	ENSGT00940000154934.B #21	ENSGT01050000244827.C.c.a.b #22	ENSGT01030000234590.A.b.a.b.a	ENSGT01030000234590.A.b.b	ENSGT00510000046760.b	ENSGT00390000008489	ENSGT00390000007965	ENSGT00940000154942.h	ENSGT00940000153664.B	ENSGT00940000160465	ENSGT00940000161729	ENSGT00730000111053	ENSGT00390000011725.d	ENSGT00940000153655.A.b	ENSGT00940000159812	ENSGT00940000162644	ENSGT00850000132319.a.a.a
Northern American deer mouse	MODERN SPECIES	19	Trpc4 (ENSPEMG00000009383) #7	Postn (ENSPEMG00000013782) #8	Supt20 (ENSPEMG00000017347) #10	ENSPEMG00000030633	Exosc8 (ENSPEMG00000010801) #12	Alg5 (ENSPEMG00000010516) #13	Smad9 (ENSPEMG00000009514) #14	Rfxap (ENSPEMG00000004230) #15	Sertm1 (ENSPEMG00000028069) #16	Ccna1 (ENSPEMG00000000149) #17	Spg20 (ENSPEMG00000019106) #18	Ccdc169 (ENSPEMG00000015894) #19	Sohlh2 (ENSPEMG00000012874)	Dclk1 (ENSPEMG00000009104) #20	Nbea (ENSPEMG00000016678) #21	Mab21l1 (ENSPEMG00000024626) #22	ENSPEMG00000017734	Tm4sf1 (ENSPEMG00000017325)	Tm4sf4 (ENSPEMG00000000298)	Wwtr1 (ENSPEMG00000030962)	ENSPEMG00000012917	Commd2 (ENSPEMG00000016801)	ENSPEMG00000015451	Rnf13 (ENSPEMG00000012436)	Pfn2 (ENSPEMG00000000065)	Tsc22d2 (ENSPEMG00000016841)	Serp1 (ENSPEMG00000024537)	Eif2a (ENSPEMG00000015613)	Selenot (ENSPEMG00000013393)	Erich6 (ENSPEMG00000017755)	Siah2 (ENSPEMG00000014755)
Prairie vole	MODERN SPECIES		Trpc4 (ENSMOCG00000022081) #7	Postn (ENSMOCG00000015092) #8	Supt20 (ENSMOCG00000020757) #10	ENSMOCG00000021184 #10	Exosc8 (ENSMOCG00000017293) #12	Alg5 (ENSMOCG00000015400) #13	Smad9 (ENSMOCG00000021863) #14	Rfxap (ENSMOCG00000022386) #15	Sertm1 (ENSMOCG00000012006) #16	Ccna1 (ENSMOCG00000004873) #17	Spg20 (ENSMOCG00000022133) #18	Ccdc169 (ENSMOCG00000008131) #19	Sohlh2 (ENSMOCG00000018376)	Dclk1 (ENSMOCG00000005325) #20	Nbea (ENSMOCG00000014417) #21	Mab21l1 (ENSMOCG00000008383) #22	ENSMOCG00000012733	Tm4sf1 (ENSMOCG00000015058)	Tm4sf4 (ENSMOCG00000010380)	Wwtr1 (ENSMOCG00000013258)	Commd2 (ENSMOCG00000013752)	Ankub1 (ENSMOCG00000020683)	Rnf13 (ENSMOCG00000013187)	Pfn2 (ENSMOCG00000017957)	ENSMOCG00000009927	ENSMOCG00000010549	Serp1 (ENSMOCG00000010605)	Eif2a (ENSMOCG00000017111)	Selenot (ENSMOCG00000014207)	Siah2 (ENSMOCG00000003011)	Clrn1 (ENSMOCG00000014705)
Murinae	ANCESTRAL SPECIES	5	ENSGT00390000010391	ENSGT01060000248594.e.b #7	ENSGT00530000063860.b #8	ENSGT00390000013549.a.a #10	ENSGT00950000183130.B #12	ENSGT00940000153481.C #13	ENSGT00940000154391.a.b #14	ENSGT00390000006573 #15	ENSGT00390000016881 #16	ENSGT00940000157940 #17	ENSGT00390000012235 #18	ENSGT00390000011174 #19	ENSGT00390000016050	ENSGT00940000154956 #20	ENSGT00940000154934.B #21	ENSGT01050000244827.C.c.a.b #22	ENSGT01030000234590.A.b.a.b.a	ENSGT01030000234590.A.b.b	ENSGT00510000046760.b	ENSGT00390000008489	ENSGT00390000007965	ENSGT00940000154942.h	ENSGT00940000153664.B	ENSGT00940000160465	ENSGT00940000161729	ENSGT00730000111053	ENSGT00390000011725.d	ENSGT00940000153655.A.b	ENSGT00940000159812	ENSGT00940000162644	ENSGT00850000132319.a.a.a
Mus	ANCESTRAL SPECIES	7	ENSGT00390000010391	ENSGT01060000248594.e.b #7	ENSGT00530000063860.b #8	ENSGT00390000013549.a.a #10	ENSGT00950000183130.B #12	ENSGT00940000153481.C #13	ENSGT00940000154391.a.b #14	ENSGT00390000006573 #15	ENSGT00390000016881 #16	ENSGT00940000157940 #17	ENSGT00390000012235 #18	ENSGT00390000011174 #19	ENSGT00390000016050	ENSGT00940000154956 #20	ENSGT00940000154934.B #21	ENSGT01050000244827.C.c.a.b #22	ENSGT01030000234590.A.b.a.b.a	ENSGT01030000234590.A.b.b	ENSGT00510000046760.b	ENSGT00390000008489	ENSGT00390000007965	ENSGT00940000154942.h	ENSGT00940000153664.B	ENSGT00940000160465	ENSGT00940000161729	ENSGT00730000111053	ENSGT00390000011725.d	ENSGT00940000153655.A.b	ENSGT00940000159812	ENSGT00940000162644	ENSGT00850000132319.a.a.a
Mus_A	ANCESTRAL SPECIES	9	ENSGT00390000010391	ENSGT01060000248594.e.b #7	ENSGT00530000063860.b #8	ENSGT00390000013549.a.a #10	ENSGT00950000183130.B #12	ENSGT00940000153481.C #13	ENSGT00940000154391.a.b #14	ENSGT00390000006573 #15	ENSGT00390000016881 #16	ENSGT00940000157940 #17	ENSGT00390000012235 #18	ENSGT00390000011174 #19	ENSGT00390000016050	ENSGT00940000154956 #20	ENSGT00940000154934.B #21	ENSGT01050000244827.C.c.a.b #22	ENSGT01030000234590.A.b.a.b.a	ENSGT01030000234590.A.b.b	ENSGT00510000046760.b	ENSGT00390000008489	ENSGT00390000007965	ENSGT00940000154942.h	ENSGT00940000153664.B	ENSGT00940000160465	ENSGT00940000161729	ENSGT00730000111053	ENSGT00390000011725.d	ENSGT00940000153655.A.b	ENSGT00940000159812	ENSGT00940000162644	ENSGT00850000132319.a.a.a
Mus_B	ANCESTRAL SPECIES	8	ENSGT00390000010391	ENSGT01060000248594.e.b #7	ENSGT00530000063860.b #8	ENSGT00390000013549.a.a #10	ENSGT00950000183130.B #12	ENSGT00940000153481.C #13	ENSGT00940000154391.a.b #14	ENSGT00390000006573 #15	ENSGT00390000016881 #16	ENSGT00940000157940 #17	ENSGT00390000012235 #18	ENSGT00390000011174 #19	ENSGT00390000016050	ENSGT00940000154956 #20	ENSGT00940000154934.B #21	ENSGT01050000244827.C.c.a.b #22	ENSGT01030000234590.A.b.a.b.a	ENSGT01030000234590.A.b.b	ENSGT00510000046760.b	ENSGT00390000008489	ENSGT00390000007965	ENSGT00940000154942.h	ENSGT00940000153664.B	ENSGT00940000160465	ENSGT00940000161729	ENSGT00730000111053	ENSGT00390000011725.d	ENSGT00940000153655.A.b	ENSGT00940000159812	ENSGT00940000162644	ENSGT00850000132319.a.a.a
Mouse	MODERN SPECIES	12	Ufm1 (ENSMUSG00000027746)	Trpc4 (ENSMUSG00000027748) #7	Postn (ENSMUSG00000027750) #8	Supt20 (ENSMUSG00000027751) #10	Exosc8 (ENSMUSG00000027752) #12	Alg5 (ENSMUSG00000036632) #13	Smad9 (ENSMUSG00000027796) #14	Rfxap (ENSMUSG00000036615) #15	Sertm1 (ENSMUSG00000056306) #16	Ccna1 (ENSMUSG00000027793) #17	Spg20 (ENSMUSG00000036580) #18	Ccdc169 (ENSMUSG00000048655) #19	Sohlh2 (ENSMUSG00000027794)	Dclk1 (ENSMUSG00000027797) #20	Nbea (ENSMUSG00000027799) #21	Mab21l1 (ENSMUSG00000056947) #22	Tm4sf1 (ENSMUSG00000027800)	Tm4sf4 (ENSMUSG00000027801)	Wwtr1 (ENSMUSG00000027803)	Commd2 (ENSMUSG00000036513)	Ankub1 (ENSMUSG00000074591)	Rnf13 (ENSMUSG00000036503)	Pfn2 (ENSMUSG00000027805)	Tsc22d2 (ENSMUSG00000027806)	Serp1 (ENSMUSG00000027808)	Eif2a (ENSMUSG00000027810)	Selenot (ENSMUSG00000075700)	Erich6 (ENSMUSG00000070471)	Siah2 (ENSMUSG00000036432)	Mindy4b-ps (ENSMUSG00000101860)	Clrn1 (ENSMUSG00000043850)
Mus_C	ANCESTRAL SPECIES	6	ENSGT00390000010391	ENSGT01060000248594.e.b #7	ENSGT00530000063860.b #8	ENSGT00390000013549.a.a #10	ENSGT00950000183130.B #12	ENSGT00940000153481.C #13	ENSGT00940000154391.a.b #14	ENSGT00390000006573 #15	ENSGT00390000016881 #16	ENSGT00940000157940 #17	ENSGT00390000012235 #18	ENSGT00390000011174 #19	ENSGT00390000016050	ENSGT00940000154956 #20	ENSGT00940000154934.B.k #21	ENSGT01050000244827.C.c.a.b #22	ENSGT01030000234590.A.b.a.b.a	ENSGT01030000234590.A.b.b	ENSGT00510000046760.b	ENSGT00390000008489	ENSGT00390000007965	ENSGT00940000154942.h	ENSGT00940000153664.B	ENSGT00940000160465	ENSGT00940000161729	ENSGT00730000111053	ENSGT00390000011725.d	ENSGT00940000153655.A.b	ENSGT00940000159812	ENSGT00940000162644	ENSGT00850000132319.a.a.a
Steppe mouse	MODERN SPECIES	2718																Mab21l1 (ENSMSIG00000031232) #22	ENSMSIG00000010611 #21	ENSMSIG00000010408
spretus	MODERN SPECIES	12	Postn (MGP_SPRETEiJ_G0025924) #8	Supt20 (MGP_SPRETEiJ_G0025925) #10	MGP_SPRETEiJ_G0025926	Exosc8 (MGP_SPRETEiJ_G0025927) #12	Alg5 (MGP_SPRETEiJ_G0025928) #13	Smad9 (MGP_SPRETEiJ_G0025929) #14	Rfxap (MGP_SPRETEiJ_G0025930) #15	Sertm1 (MGP_SPRETEiJ_G0025931) #16	Ccna1 (MGP_SPRETEiJ_G0025932) #17	Spg20 (MGP_SPRETEiJ_G0025933) #18	Ccdc169 (MGP_SPRETEiJ_G0025934) #19	Sohlh2 (MGP_SPRETEiJ_G0025935)	Dclk1 (MGP_SPRETEiJ_G0025936) #20	MGP_SPRETEiJ_G0025937	Nbea (MGP_SPRETEiJ_G0025938) #21	Mab21l1 (MGP_SPRETEiJ_G0025939) #22	Tm4sf1 (MGP_SPRETEiJ_G0025940)	Tm4sf4 (MGP_SPRETEiJ_G0025941)	Wwtr1 (MGP_SPRETEiJ_G0025942)	Commd2 (MGP_SPRETEiJ_G0025943)	Ankub1 (MGP_SPRETEiJ_G0025944)	Rnf13 (MGP_SPRETEiJ_G0025945)	Pfn2 (MGP_SPRETEiJ_G0025946)	Tsc22d2 (MGP_SPRETEiJ_G0025947)	Serp1 (MGP_SPRETEiJ_G0025948)	Eif2a (MGP_SPRETEiJ_G0025949)	MGP_SPRETEiJ_G0025950	Erich6 (MGP_SPRETEiJ_G0025951)	Siah2 (MGP_SPRETEiJ_G0025952)	Clrn1 (MGP_SPRETEiJ_G0025953)	Med12l (MGP_SPRETEiJ_G0025954)
Ryukyu mouse	MODERN SPECIES	12	Trpc4 (MGP_CAROLIEiJ_G0024988) #7	Postn (MGP_CAROLIEiJ_G0024989) #8	Supt20 (MGP_CAROLIEiJ_G0024990) #10	MGP_CAROLIEiJ_G0024991	Exosc8 (MGP_CAROLIEiJ_G0024992) #12	Alg5 (MGP_CAROLIEiJ_G0024993) #13	Smad9 (MGP_CAROLIEiJ_G0024994) #14	Rfxap (MGP_CAROLIEiJ_G0024995) #15	Sertm1 (MGP_CAROLIEiJ_G0024996) #16	Ccna1 (MGP_CAROLIEiJ_G0024997) #17	Spg20 (MGP_CAROLIEiJ_G0024998) #18	Ccdc169 (MGP_CAROLIEiJ_G0024999) #19	Sohlh2 (MGP_CAROLIEiJ_G0025000)	Dclk1 (MGP_CAROLIEiJ_G0025001) #20	Nbea (MGP_CAROLIEiJ_G0025002) #21	Mab21l1 (MGP_CAROLIEiJ_G0025003) #22	Tm4sf1 (MGP_CAROLIEiJ_G0025004)	Tm4sf4 (MGP_CAROLIEiJ_G0025005)	Wwtr1 (MGP_CAROLIEiJ_G0025006)	Tsc22d2 (MGP_CAROLIEiJ_G0025007)	Serp1 (MGP_CAROLIEiJ_G0025008)	Eif2a (MGP_CAROLIEiJ_G0025009)	Selenot (MGP_CAROLIEiJ_G0025010)	MGP_CAROLIEiJ_G0025011	Siah2 (MGP_CAROLIEiJ_G0025012)	Clrn1 (MGP_CAROLIEiJ_G0025013)	Med12l (MGP_CAROLIEiJ_G0025014)	Gpr171 (MGP_CAROLIEiJ_G0025015)	P2ry14 (MGP_CAROLIEiJ_G0025016)	Gpr87 (MGP_CAROLIEiJ_G0025017)	P2ry13 (MGP_CAROLIEiJ_G0025018)
Shrew mouse	MODERN SPECIES	17	Postn (MGP_PahariEiJ_G0026430) #8	Supt20 (MGP_PahariEiJ_G0026431) #10	MGP_PahariEiJ_G0026432	Exosc8 (MGP_PahariEiJ_G0026433) #12	Alg5 (MGP_PahariEiJ_G0026434) #13	Smad9 (MGP_PahariEiJ_G0026435) #14	Rfxap (MGP_PahariEiJ_G0026436) #15	Sertm1 (MGP_PahariEiJ_G0026437) #16	Ccna1 (MGP_PahariEiJ_G0026438) #17	Spg20 (MGP_PahariEiJ_G0026439) #18	Ccdc169 (MGP_PahariEiJ_G0026440) #19	Sohlh2 (MGP_PahariEiJ_G0026441)	Dclk1 (MGP_PahariEiJ_G0026442) #20	MGP_PahariEiJ_G0026443	Nbea (MGP_PahariEiJ_G0026444) #21	Mab21l1 (MGP_PahariEiJ_G0026445) #22	Tm4sf1 (MGP_PahariEiJ_G0026446)	Tm4sf4 (MGP_PahariEiJ_G0026448)	Wwtr1 (MGP_PahariEiJ_G0026449)	Pfn2 (MGP_PahariEiJ_G0026450)	Tsc22d2 (MGP_PahariEiJ_G0026451)	Serp1 (MGP_PahariEiJ_G0026452)	Eif2a (MGP_PahariEiJ_G0026453)	MGP_PahariEiJ_G0026455	Siah2 (MGP_PahariEiJ_G0026456)	Clrn1 (MGP_PahariEiJ_G0026457)	Med12l (MGP_PahariEiJ_G0026458)	Gpr171 (MGP_PahariEiJ_G0026459)	P2ry14 (MGP_PahariEiJ_G0026460)	Gpr87 (MGP_PahariEiJ_G0026461)	P2ry13 (MGP_PahariEiJ_G0026462)
Rat	MODERN SPECIES	11	Dusp14l1 (ENSRNOG00000046368)	Rexo1l1-ps1 (ENSRNOG00000061707)	Supt20h (ENSRNOG00000059480) #10	Exosc8 (ENSRNOG00000051623) #12	Alg5 (ENSRNOG00000058694) #13	Smad9 (ENSRNOG00000000091) #14	Rfxap (ENSRNOG00000064105) #15	Sertm1 (ENSRNOG00000014046) #16	Ccna1 (ENSRNOG00000014052) #17	Spart (ENSRNOG00000014155) #18	Ccdc169 (ENSRNOG00000038095) #19	Sohlh2 (ENSRNOG00000038091)	Dclk1 (ENSRNOG00000032922) #20	LOC102552324 (ENSRNOG00000056545)	Nbea (ENSRNOG00000065312) #21	Mab21l1 (ENSRNOG00000032941) #22	Tm4sf1 (ENSRNOG00000015812)	Tm4sf4 (ENSRNOG00000016437)	AC129365.1 (ENSRNOG00000061358)	Wwtr1 (ENSRNOG00000016617)	Rpl12-ps2 (ENSRNOG00000070749)	Commd2 (ENSRNOG00000043386)	Ankub1 (ENSRNOG00000070034)	Rnf13 (ENSRNOG00000029209)	Pfn2 (ENSRNOG00000017427)	AABR07010705.1 (ENSRNOG00000032715)	Tsc22d2 (ENSRNOG00000038044)	Serp1 (ENSRNOG00000011763)	Eif2a (ENSRNOG00000013393)	Selenot (ENSRNOG00000013507)	AC112531.1 (ENSRNOG00000031588)
Upper Galilee mountains blind mole rat	MODERN SPECIES	711								Sertm1 (ENSNGAG00000018327) #16	Ccna1 (ENSNGAG00000020244) #17	Spg20 (ENSNGAG00000011734) #18	Ccdc169 (ENSNGAG00000008813) #19	Sohlh2 (ENSNGAG00000019687)	Dclk1 (ENSNGAG00000013693) #20	ENSNGAG00000014771	Nbea (ENSNGAG00000020626) #21	Mab21l1 (ENSNGAG00000001828) #22
Rodentia_A	ANCESTRAL SPECIES	22	ENSGT00390000010391	ENSGT01060000248594.e.b #7	ENSGT00530000063860.b #8	ENSGT00390000013549.a.a #10	ENSGT00940000170406	ENSGT00950000183130.B #12	ENSGT00940000153481.C #13	ENSGT00940000154391.a.b #14	ENSGT00390000006573 #15	ENSGT00390000016881 #16	ENSGT00940000157940 #17	ENSGT00390000012235 #18	ENSGT00390000011174 #19	ENSGT00390000016050	ENSGT00940000154956 #20	ENSGT01050000244827.C.c.a.b #22	ENSGT00940000154934.B #21	ENSGT00550000075006 #24	ENSGT00950000183061.a.a.b	ENSGT00940000157614	ENSGT00940000157257	ENSGT00940000161440	ENSGT00940000165080	ENSGT00940000161564	ENSGT00390000003602	ENSGT00390000012305.b	ENSGT00610000086058.b	ENSGT00940000158948.b	ENSGT00940000155499	ENSGT00940000159635	ENSGT00940000162967
Sciuridae	ANCESTRAL SPECIES	34	ENSGT01060000248594.e.b #7	ENSGT00530000063860.b #8	ENSGT00940000170406	ENSGT00390000013549.a.a #10	ENSGT00950000183130.B #12	ENSGT00940000153481.C #13	ENSGT00940000154391.a.b #14	ENSGT00390000006573 #15	ENSGT00940000160886.q.b.a	ENSGT00390000016881 #16	ENSGT00940000157940 #17	ENSGT00390000012235 #18	ENSGT00390000011174 #19	ENSGT00390000016050	ENSGT00940000154956 #20	ENSGT01050000244827.C.c.a.b #22	ENSGT00940000154934.B #21	ENSGT00550000075006 #24	ENSGT00950000183061.a.a.b	ENSGT00940000157614	ENSGT00940000157257	ENSGT00940000161440	ENSGT00940000165080	ENSGT00940000161564	ENSGT00390000003602	ENSGT00390000012305.b	ENSGT00610000086058.b	ENSGT00940000158948.b	ENSGT00940000155499	ENSGT00940000159635	ENSGT00940000162967
Marmotini	ANCESTRAL SPECIES	29	ENSGT01060000248594.e.b #7	ENSGT00530000063860.b #8	ENSGT00940000170406	ENSGT00390000013549.a.a #10	ENSGT00950000183130.B #12	ENSGT00940000153481.C #13	ENSGT00940000154391.a.b #14	ENSGT00390000006573 #15	ENSGT00940000160886.q.b.a	ENSGT00390000016881 #16	ENSGT00940000157940 #17	ENSGT00390000012235 #18	ENSGT00390000011174 #19	ENSGT00390000016050	ENSGT00940000154956 #20	ENSGT01050000244827.C.c.a.b #22	ENSGT00940000154934.B #21	ENSGT00550000075006 #24	ENSGT00950000183061.a.a.b	ENSGT00940000157614	ENSGT00940000157257	ENSGT00940000161440	ENSGT00940000165080	ENSGT00940000161564	ENSGT00390000003602	ENSGT00390000012305.b	ENSGT00610000086058.b	ENSGT00940000158948.b	ENSGT00940000155499	ENSGT00940000159635	ENSGT00940000162967
Alpin marmot	MODERN SPECIES	13	TRPC4 (ENSMMMG00000022717) #7	POSTN (ENSMMMG00000022684) #8	ENSMMMG00000022672	SUPT20H (ENSMMMG00000022648) #10	EXOSC8 (ENSMMMG00000022642) #12	ALG5 (ENSMMMG00000022636) #13	ENSMMMG00000022634 #14	RFXAP (ENSMMMG00000022632) #15	SERTM1 (ENSMMMG00000022628) #16	CCNA1 (ENSMMMG00000022623) #17	SPART (ENSMMMG00000022611) #18	CCDC169 (ENSMMMG00000022606) #19	SOHLH2 (ENSMMMG00000022599)	ENSMMMG00000022597	DCLK1 (ENSMMMG00000022381) #20	MAB21L1 (ENSMMMG00000022365) #22	ENSMMMG00000022359	NBEA (ENSMMMG00000022327) #21	RFC3 (ENSMMMG00000022269) #24	STARD13 (ENSMMMG00000022235)	KL (ENSMMMG00000022232)	PDS5B (ENSMMMG00000022194)	ENSMMMG00000022169	ENSMMMG00000022166	N4BP2L2 (ENSMMMG00000022165)	ENSMMMG00000022143	N4BP2L1 (ENSMMMG00000022139)	BRCA2 (ENSMMMG00000022103)	ZAR1L (ENSMMMG00000022098)	FRY (ENSMMMG00000022076)	RXFP2 (ENSMMMG00000022035)
Marmotini_b	ANCESTRAL SPECIES	39	ENSGT01060000248594.e.b #7	ENSGT00530000063860.b #8	ENSGT00940000170406	ENSGT00390000013549.a.a #10	ENSGT00950000183130.B #12	ENSGT00940000153481.C #13	ENSGT00940000154391.a.b #14	ENSGT00390000006573 #15	ENSGT00940000160886.q.b.a	ENSGT00390000016881 #16	ENSGT00940000157940 #17	ENSGT00390000012235 #18	ENSGT00390000011174 #19	ENSGT00390000016050	ENSGT00940000154956 #20	ENSGT01050000244827.C.c.a.b #22	ENSGT00940000154934.B #21	ENSGT00550000075006 #24	ENSGT00950000183061.a.a.b	ENSGT00940000157614	ENSGT00940000157257	ENSGT00940000161440	ENSGT00940000165080	ENSGT00940000161564	ENSGT00390000003602	ENSGT00390000012305.b	ENSGT00610000086058.b	ENSGT00940000158948.b	ENSGT00940000155499	ENSGT00940000159635	ENSGT00940000162967
Arctic ground squirrel	MODERN SPECIES	151			SUPT20H (ENSUPAG00010002093) #10	EXOSC8 (ENSUPAG00010002070) #12	ALG5 (ENSUPAG00010002045) #13	ENSUPAG00010002021 #14	RFXAP (ENSUPAG00010002005) #15	ENSUPAG00010001995	SERTM1 (ENSUPAG00010001992) #16	CCNA1 (ENSUPAG00010001949) #17	SPART (ENSUPAG00010001898) #18	CCDC169 (ENSUPAG00010001871) #19	SOHLH2 (ENSUPAG00010001811)	ENSUPAG00010001798	DCLK1 (ENSUPAG00010000839) #20	MAB21L1 (ENSUPAG00010000814) #22	NBEA (ENSUPAG00010000696) #21	RFC3 (ENSUPAG00010000673) #24	STARD13 (ENSUPAG00010000595)	KL (ENSUPAG00010000585)	PDS5B (ENSUPAG00010000150)
Squirrel	MODERN SPECIES	72			TRPC4 (ENSSTOG00000000791) #7	POSTN (ENSSTOG00000000785) #8	ENSSTOG00000029569	ENSSTOG00000033110 #12	ALG5 (ENSSTOG00000002027) #13	SMAD9 (ENSSTOG00000007103)	RFXAP (ENSSTOG00000028189) #15	ENSSTOG00000020448	SERTM1 (ENSSTOG00000020432) #16	CCNA1 (ENSSTOG00000003628) #17	SPART (ENSSTOG00000014775) #18	CCDC169 (ENSSTOG00000033458) #19	DCLK1 (ENSSTOG00000012243) #20	MAB21L1 (ENSSTOG00000009634) #22	NBEA (ENSSTOG00000012208) #21	RFC3 (ENSSTOG00000000378) #24	STARD13 (ENSSTOG00000006622)	KL (ENSSTOG00000024168)	PDS5B (ENSSTOG00000001429)	ENSSTOG00000030222	N4BP2L1 (ENSSTOG00000005584)	ENSSTOG00000005517	ZAR1L (ENSSTOG00000005506)	FRY (ENSSTOG00000013718)	RXFP2 (ENSSTOG00000010636)	B3GLCT (ENSSTOG00000001710)	HSPH1 (ENSSTOG00000001700)	ENSSTOG00000020892	MEDAG (ENSSTOG00000003534)
Eurasian red squirrel	MODERN SPECIES	13	ENSSVLG00005008703	ENSSVLG00005008714	SUPT20H (ENSSVLG00005008744) #10	EXOSC8 (ENSSVLG00005008946) #12	ALG5 (ENSSVLG00005009018) #13	ENSSVLG00005009080 #14	RFXAP (ENSSVLG00005009115) #15	ENSSVLG00005009129	SERTM1 (ENSSVLG00005009166) #16	CCNA1 (ENSSVLG00005009186) #17	SPART (ENSSVLG00005009224) #18	CCDC169 (ENSSVLG00005009253) #19	SOHLH2 (ENSSVLG00005009335)	DCLK1 (ENSSVLG00005009476) #20	NBEA (ENSSVLG00005010027) #21	MAB21L1 (ENSSVLG00005012010) #22	ENSSVLG00005012035	ENSSVLG00005012094 #24	STARD13 (ENSSVLG00005012412)	KL (ENSSVLG00005012761)	ENSSVLG00005012836	ENSSVLG00005012874	PDS5B (ENSSVLG00005012920)	ENSSVLG00005013108	N4BP2L1 (ENSSVLG00005013256)	BRCA2 (ENSSVLG00005015076)	ZAR1L (ENSSVLG00005019599)	FRY (ENSSVLG00005019945)	ENSSVLG00005020793	RXFP2 (ENSSVLG00005020815)	B3GLCT (ENSSVLG00005021156)
Hystricomorpha	ANCESTRAL SPECIES	25	ENSGT01060000248594.e.b #7	ENSGT00530000063860.b #8	ENSGT00390000013549.a.a #10	ENSGT00940000170406	ENSGT00950000183130.B #12	ENSGT00940000153481.C #13	ENSGT00940000154391.a.b #14	ENSGT00390000006573 #15	ENSGT00390000016881 #16	ENSGT00940000157940 #17	ENSGT00390000012235 #18	ENSGT00390000011174 #19	ENSGT00390000016050	ENSGT00940000154956 #20	ENSGT00940000154934.B #21	ENSGT01050000244827.C.c.a.b #22	ENSGT00550000075006 #24	ENSGT00950000183061.a.a.b	ENSGT00940000157614.f	ENSGT00940000157257	ENSGT00940000161440	ENSGT00940000161564	ENSGT00390000003602	ENSGT00390000012305.b	ENSGT00610000086058.b	ENSGT00940000158948.b	ENSGT00940000155499	ENSGT00940000157034.gb	ENSGT00940000159635	ENSGT00940000162967	ENSGT00390000009484
Hystricomorpha_a	ANCESTRAL SPECIES	21	ENSGT00390000010391.l.b	ENSGT01060000248594.e.b #7	ENSGT00530000063860.b #8	ENSGT00390000013549.a.a #10	ENSGT00940000170406	ENSGT00950000183130.B #12	ENSGT00940000153481.C #13	ENSGT00940000154391.a.b #14	ENSGT00390000006573 #15	ENSGT00940000157940 #17	ENSGT00390000012235 #18	ENSGT00390000011174 #19	ENSGT00390000016050	ENSGT00940000154956 #20	ENSGT00940000154934.B #21	ENSGT01050000244827.C.c.a.b #22	ENSGT00550000075006 #24	ENSGT00950000183061.a.a.b	ENSGT00940000157614.f	ENSGT00940000157257	ENSGT00940000161440	ENSGT00940000161564	ENSGT00390000003602	ENSGT00390000012305.b	ENSGT00610000086058.b	ENSGT00940000158948.b	ENSGT00940000155499	ENSGT00940000157034.gb	ENSGT00940000159635	ENSGT00940000162967	ENSGT00390000009484
Hystricomorpha_b	ANCESTRAL SPECIES	48	ENSGT00390000010391.l.a	ENSGT01060000248594.e.b #7	ENSGT00530000063860.b #8	ENSGT00390000013549.a.a #10	ENSGT00940000170406	ENSGT00950000183130.B #12	ENSGT00940000153481.C #13	ENSGT00940000154391.a.b #14	ENSGT00390000006573 #15	ENSGT00940000157940 #17	ENSGT00390000012235 #18	ENSGT00390000011174 #19	ENSGT00390000016050	ENSGT00940000154956 #20	ENSGT00940000154934.B #21	ENSGT01050000244827.C.c.a.b #22	ENSGT00550000075006 #24	ENSGT00950000183061.a.a.b	ENSGT00940000157614.f	ENSGT00940000157257	ENSGT00940000161440	ENSGT00940000161564	ENSGT00390000003602	ENSGT00390000012305.b	ENSGT00610000086058.b	ENSGT00940000158948.b	ENSGT00940000155499	ENSGT00940000157034.gb	ENSGT00940000159635	ENSGT00940000162967	ENSGT00390000009484
Long-tailed chinchilla	MODERN SPECIES	138	FREM2 (ENSCLAG00000012778)	ENSCLAG00000013090	TRPC4 (ENSCLAG00000010452) #7	POSTN (ENSCLAG00000005084) #8	SUPT20H (ENSCLAG00000006314) #10	EXOSC8 (ENSCLAG00000003456) #12	ALG5 (ENSCLAG00000003827) #13	ENSCLAG00000004108 #14	RFXAP (ENSCLAG00000005593) #15	CCNA1 (ENSCLAG00000004772) #17	SPART (ENSCLAG00000005026) #18	CCDC169 (ENSCLAG00000005286) #19	SOHLH2 (ENSCLAG00000005516)	DCLK1 (ENSCLAG00000006827) #20	NBEA (ENSCLAG00000005089) #21	MAB21L1 (ENSCLAG00000017521) #22	ENSCLAG00000003179	RFC3 (ENSCLAG00000003664) #24	STARD13 (ENSCLAG00000003814)	KL (ENSCLAG00000004704)	PDS5B (ENSCLAG00000003381)	ENSCLAG00000004607	N4BP2L1 (ENSCLAG00000004721)	BRCA2 (ENSCLAG00000005830)	ZAR1L (ENSCLAG00000004947)	FRY (ENSCLAG00000005912)	RXFP2 (ENSCLAG00000005864)	B3GLCT (ENSCLAG00000003709)	ENSCLAG00000017567	HSPH1 (ENSCLAG00000004472)	ENSCLAG00000004125
Degu	MODERN SPECIES	79	POSTN (ENSODEG00000007952) #8	ENSODEG00000019477	ENSODEG00000007528 #10	ENSODEG00000009776	ENSODEG00000009230 #12	ALG5 (ENSODEG00000007256) #13	ENSODEG00000006771 #14	RFXAP (ENSODEG00000010191) #15	CCNA1 (ENSODEG00000006932) #17	ENSODEG00000007237 #18	CCDC169 (ENSODEG00000006643) #19	ENSODEG00000007164	DCLK1 (ENSODEG00000006680) #20	ENSODEG00000019680	ENSODEG00000006935	MAB21L1 (ENSODEG00000019299) #22	ENSODEG00000008552	NBEA (ENSODEG00000006275) #21	MCM5 (ENSODEG00000005912)	ENSODEG00000007112 #24	STARD13 (ENSODEG00000006691)	KL (ENSODEG00000006590)	ENSODEG00000019263	PDS5B (ENSODEG00000006819)	ENSODEG00000006412	N4BP2L2 (ENSODEG00000006521)	ENSODEG00000005727	ENSODEG00000009214	ENSODEG00000007088	ZAR1L (ENSODEG00000005981)	FRY (ENSODEG00000006572)
Naked mole-rat female	MODERN SPECIES	2	POSTN (ENSHGLG00000000277) #8	ENSHGLG00000021175	SUPT20H (ENSHGLG00000013900) #10	EXOSC8 (ENSHGLG00000002963) #12	ALG5 (ENSHGLG00000003783) #13	ENSHGLG00000050490 #14	RFXAP (ENSHGLG00000004899) #15	SERTM1 (ENSHGLG00000047070) #16	CCNA1 (ENSHGLG00000002880) #17	SPG20 (ENSHGLG00000003791) #18	CCDC169 (ENSHGLG00000032864) #19	ENSHGLG00000010793	ENSHGLG00000003703	ENSHGLG00000037090	ENSHGLG00000003756 #20	MAB21L1 (ENSHGLG00000035394) #22	ENSHGLG00000004608 #21	ENSHGLG00000013996	ENSHGLG00000021428	ENSHGLG00000019417 #24	ENSHGLG00000021355	ENSHGLG00000032772	ENSHGLG00000018786	KL (ENSHGLG00000005334)	ENSHGLG00000006974	PDS5B (ENSHGLG00000006670)	ENSHGLG00000018160	ENSHGLG00000039341	N4BP2L1 (ENSHGLG00000006971)	BRCA2 (ENSHGLG00000008590)	ZAR1L (ENSHGLG00000006253)