Glires	ANCESTRAL SPECIES		ENSGT00390000014494	ENSGT00950000182931.B.a.b #7	ENSGT00950000183011.c.a.a #8	ENSGT00940000158947 #9	ENSGT00390000016950 #10	ENSGT00390000018003.a #11	ENSGT00940000163318 #12	ENSGT00390000003368.d #13	ENSGT00940000158152 #14	ENSGT00940000157504 #15	ENSGT00390000007725.A.b #16	ENSGT00390000012496.a #18	ENSGT00390000019377.b #19	ENSGT00940000162602 #20	ENSGT00940000160364 #21	ENSGT01050000244827.B #22	ENSGT00940000154840.b #23	ENSGT00940000155177.b #24	ENSGT01030000234540.E #25	ENSGT00940000158367 #26	ENSGT00940000161722	ENSGT00940000162718 #27	ENSGT00940000154334.k #28	ENSGT00940000157300 #29	ENSGT00940000157498 #31	ENSGT00940000158856 #32	ENSGT00940000156336 #36	ENSGT00940000153859.a #37	ENSGT00390000013693	ENSGT00940000159013	ENSGT00940000153724.A
Rodentia	ANCESTRAL SPECIES		ENSGT00390000014494	ENSGT00950000182931.B.a.b #7	ENSGT00950000183011.c.a.a #8	ENSGT00940000158947 #9	ENSGT00390000016950 #10	ENSGT00390000018003.a #11	ENSGT00940000163318 #12	ENSGT00390000003368.d #13	ENSGT00940000158152 #14	ENSGT00940000157504 #15	ENSGT00390000007725.A.b #16	ENSGT00390000012496.a #18	ENSGT00390000019377.b #19	ENSGT00940000162602 #20	ENSGT00940000160364 #21	ENSGT01050000244827.B #22	ENSGT00940000154840.b #23	ENSGT00940000155177.b #24	ENSGT01030000234540.E #25	ENSGT00940000158367 #26	ENSGT00940000161722	ENSGT00940000162718 #27	ENSGT00940000154334.k #28	ENSGT00940000157300 #29	ENSGT00940000157498 #31	ENSGT00940000158856 #32	ENSGT00940000156336 #36	ENSGT00940000153859.a #37	ENSGT00390000013693	ENSGT00940000159013	ENSGT00940000153724.A
Rodentia_B	ANCESTRAL SPECIES		ENSGT00390000014494	ENSGT00950000182931.B.a.b #7	ENSGT00950000183011.c.a.a #8	ENSGT00940000158947 #9	ENSGT00390000016950 #10	ENSGT00390000018003.a #11	ENSGT00940000163318 #12	ENSGT00390000003368.d #13	ENSGT00940000158152 #14	ENSGT00940000157504 #15	ENSGT00390000007725.A.b #16	ENSGT00390000012496.a #18	ENSGT00390000019377.b #19	ENSGT00940000162602 #20	ENSGT00940000160364 #21	ENSGT01050000244827.B #22	ENSGT00940000154840.b #23	ENSGT00940000155177.b #24	ENSGT01030000234540.E #25	ENSGT00940000158367 #26	ENSGT00940000161722	ENSGT00940000162718 #27	ENSGT00940000154334.k #28	ENSGT00940000157300 #29	ENSGT00940000157498 #31	ENSGT00940000158856 #32	ENSGT00940000156336 #36	ENSGT00940000153859.a #37	ENSGT00390000013693	ENSGT00940000159013	ENSGT00940000153724.A
Myomorpha	ANCESTRAL SPECIES	12	ENSGT00390000014494	ENSGT00950000182931.B.a.b #7	ENSGT00950000183011.c.a.a #8	ENSGT00940000158947 #9	ENSGT00390000016950 #10	ENSGT00390000018003.a #11	ENSGT00940000163318 #12	ENSGT00390000003368.d #13	ENSGT00940000158152 #14	ENSGT00940000157504 #15	ENSGT00390000007725.A.b #16	ENSGT00390000012496.a #18	ENSGT00390000019377.b #19	ENSGT00940000162602 #20	ENSGT00940000160364 #21	ENSGT01050000244827.B #22	ENSGT00940000154840.b #23	ENSGT00940000155177.b #24	ENSGT01030000234540.E #25	ENSGT00940000158367 #26	ENSGT00940000161722	ENSGT00940000162718 #27	ENSGT00940000154334.k #28	ENSGT00940000157300 #29	ENSGT00940000157498 #31	ENSGT00940000158856 #32	ENSGT00940000156336 #36	ENSGT00940000153859.a #37	ENSGT00390000013693	ENSGT00940000159013	ENSGT00940000153724.A
Lesser Egyptian jerboa	MODERN SPECIES	144	Dennd2c (ENSJJAG00000009709) #7	Ampd1 (ENSJJAG00000021675) #8	ENSJJAG00000020941 #9	Csde1 (ENSJJAG00000019571) #10	ENSJJAG00000019089 #11	Nr1h5 (ENSJJAG00000018578) #12	ENSJJAG00000018067 #13	Tshb (ENSJJAG00000001329) #14	Tspan2 (ENSJJAG00000000832) #15	Ngf (ENSJJAG00000022901) #16	ENSJJAG00000021722 #17	Vangl1 (ENSJJAG00000021462) #18	Casq2 (ENSJJAG00000020862) #19	Nhlh2 (ENSJJAG00000019983) #20	Slc22a15 (ENSJJAG00000000255) #21	Mab21l3 (ENSJJAG00000022482) #22	Atp1a1 (ENSJJAG00000020791) #23	Igsf3 (ENSJJAG00000017489) #24	Cd2 (ENSJJAG00000019842) #25	Ptgfrn (ENSJJAG00000019616) #26	Ttf2 (ENSJJAG00000015225) #27	Trim45 (ENSJJAG00000007227) #28	Vtcn1 (ENSJJAG00000019207) #29	ENSJJAG00000018170 #30	Man1a2 (ENSJJAG00000017865) #31	Tent5c (ENSJJAG00000013174) #32	ENSJJAG00000017333 #33	ENSJJAG00000014767 #34	ENSJJAG00000013768 #35	ENSJJAG00000013505 #36	Wdr3 (ENSJJAG00000013861) #37
Muroidea	ANCESTRAL SPECIES	6	ENSGT00390000014494	ENSGT00950000182931.B.a.b #7	ENSGT00950000183011.c.a.a #8	ENSGT00940000158947 #9	ENSGT00390000016950 #10	ENSGT00390000018003.a #11	ENSGT00940000163318 #12	ENSGT00390000003368.d #13	ENSGT00940000158152 #14	ENSGT00940000157504 #15	ENSGT00390000007725.A.b #16	ENSGT00390000012496.a #18	ENSGT00390000019377.b #19	ENSGT00940000162602 #20	ENSGT00940000160364 #21	ENSGT01050000244827.B #22	ENSGT00940000154840.b #23	ENSGT00940000155177.b #24	ENSGT01030000234540.E #25	ENSGT00940000158367 #26	ENSGT00940000161722	ENSGT00940000162718 #27	ENSGT00940000154334.k #28	ENSGT00940000157300 #29	ENSGT00940000157498 #31	ENSGT00940000158856 #32	ENSGT00940000156336 #36	ENSGT00940000153859.a #37	ENSGT00390000013693	ENSGT00940000159013	ENSGT00940000153724.A
Muroidea_A	ANCESTRAL SPECIES	5	ENSGT00390000014494	ENSGT00950000182931.B.a.b #7	ENSGT00950000183011.c.a.a #8	ENSGT00940000158947 #9	ENSGT00390000016950 #10	ENSGT00390000018003.a #11	ENSGT00940000163318 #12	ENSGT00390000003368.d #13	ENSGT00940000158152 #14	ENSGT00940000157504 #15	ENSGT00390000007725.A.b #16	ENSGT00390000012496.a #18	ENSGT00390000019377.b #19	ENSGT00940000162602 #20	ENSGT00940000160364 #21	ENSGT01050000244827.B #22	ENSGT00940000154840.b #23	ENSGT00940000155177.b #24	ENSGT01030000234540.E #25	ENSGT00940000158367 #26	ENSGT00940000161722	ENSGT00940000162718 #27	ENSGT00940000154334.k #28	ENSGT00940000157300 #29	ENSGT00940000157498 #31	ENSGT00940000158856 #32	ENSGT00940000156336 #36	ENSGT00940000153859.a #37	ENSGT00390000013693	ENSGT00940000159013	ENSGT00940000153724.A
Cricetidae	ANCESTRAL SPECIES	6	ENSGT00390000014494	ENSGT00950000182931.B.a.b #7	ENSGT00950000183011.c.a.a #8	ENSGT00940000158947 #9	ENSGT00390000016950 #10	ENSGT00390000018003.a #11	ENSGT00940000163318 #12	ENSGT00390000003368.d #13	ENSGT00940000158152 #14	ENSGT00940000157504 #15	ENSGT00390000007725.A.b #16	ENSGT00390000012496.a #18	ENSGT00390000019377.b #19	ENSGT00940000162602 #20	ENSGT00940000160364 #21	ENSGT01050000244827.B #22	ENSGT00940000154840.b #23	ENSGT00940000155177.b #24	ENSGT01030000234540.E #25	ENSGT00940000158367 #26	ENSGT00940000161722	ENSGT00940000165376	ENSGT00940000162718 #27	ENSGT00940000154334.k #28	ENSGT00940000157300 #29	ENSGT00940000157498 #31	ENSGT00940000158856 #32	ENSGT00940000156336 #36	ENSGT00940000153859.a #37	ENSGT00390000013693	ENSGT00940000159013
Cricetinae	ANCESTRAL SPECIES	12	ENSGT00390000014494	ENSGT00950000182931.B.a.b #7	ENSGT00950000183011.c.a.a #8	ENSGT00940000158947 #9	ENSGT00390000016950 #10	ENSGT00390000018003.a #11	ENSGT00940000163318 #12	ENSGT00390000003368.d #13	ENSGT00940000158152 #14	ENSGT00940000157504 #15	ENSGT00390000007725.A.b #16	ENSGT00390000012496.a #18	ENSGT00390000019377.b #19	ENSGT00940000162602 #20	ENSGT00940000160364 #21	ENSGT01050000244827.B #22	ENSGT00940000154840.b #23	ENSGT00940000155177.b #24	ENSGT01030000234540.E #25	ENSGT00940000158367 #26	ENSGT00940000161722	ENSGT00940000165376	ENSGT00940000154334.k #28	ENSGT00940000157300 #29	ENSGT00940000157498 #31	ENSGT00940000158856 #32	ENSGT00940000156336 #36	ENSGT00940000153859.a #37	ENSGT00390000013693	ENSGT00940000159013	ENSGT00940000153724.A
Golden Hamster	MODERN SPECIES	681	Bcas2 (ENSMAUG00000013855)	Dennd2c (ENSMAUG00000013289) #7	Ampd1 (ENSMAUG00000001096) #8	Nras (ENSMAUG00000019927) #9	Csde1 (ENSMAUG00000014031) #10	Sike1 (ENSMAUG00000012482) #11	Nr1h5 (ENSMAUG00000010803) #12	Sycp1 (ENSMAUG00000000328) #13	Tshb (ENSMAUG00000005156) #14	Tspan2 (ENSMAUG00000004539) #15	ENSMAUG00000002276 #16	Vangl1 (ENSMAUG00000009480) #18	Casq2 (ENSMAUG00000000284) #19	Nhlh2 (ENSMAUG00000016936) #20	Slc22a15 (ENSMAUG00000010758) #21	Mab21l3 (ENSMAUG00000009568) #22	ENSMAUG00000008452	Atp1a1 (ENSMAUG00000017136) #23	ENSMAUG00000017849	Igsf3 (ENSMAUG00000013987) #24	Cd2 (ENSMAUG00000012774) #25	Ptgfrn (ENSMAUG00000002851) #26	Cd101 (ENSMAUG00000017674)	ENSMAUG00000016725	Trim45 (ENSMAUG00000013623) #28	Vtcn1 (ENSMAUG00000015061) #29	Man1a2 (ENSMAUG00000000417) #31	Tent5c (ENSMAUG00000017728) #32	ENSMAUG00000017297	Gdap2 (ENSMAUG00000014132) #36	Wdr3 (ENSMAUG00000002574) #37
Chinese hamster chok1gshd	MODERN SPECIES	66	Ampd1 (ENSCGRG00001014246) #8	Nras (ENSCGRG00001020093) #9	ENSCGRG00001016833 #10	ENSCGRG00001011859	Sike1 (ENSCGRG00001023509) #11	Nr1h5 (ENSCGRG00001022882) #12	Sycp1 (ENSCGRG00001010102) #13	ENSCGRG00001006375	Tshb (ENSCGRG00001012202) #14	Tspan2 (ENSCGRG00001014655) #15	Ngf (ENSCGRG00001000250) #16	Vangl1 (ENSCGRG00001022127) #18	Casq2 (ENSCGRG00001013746) #19	Nhlh2 (ENSCGRG00001009328) #20	Slc22a15 (ENSCGRG00001018525) #21	Mab21l3 (ENSCGRG00001018373) #22	Atp1a1 (ENSCGRG00001024330) #23	Igsf3 (ENSCGRG00001017829) #24	Cd2 (ENSCGRG00001019348) #25	Ptgfrn (ENSCGRG00001022148) #26	Cd101 (ENSCGRG00001024359)	ENSCGRG00001006277	Trim45 (ENSCGRG00001000157) #28	Vtcn1 (ENSCGRG00001015357) #29	Man1a2 (ENSCGRG00001020266) #31	Tent5c (ENSCGRG00001005586) #32	Gdap2 (ENSCGRG00001012369) #36	Wdr3 (ENSCGRG00001019544) #37	Spag17 (ENSCGRG00001013560)	Tbx15 (ENSCGRG00001024224)	Wars2 (ENSCGRG00001018718)
Cricetidae_B	ANCESTRAL SPECIES	3	ENSGT00390000014494	ENSGT00950000182931.B.a.b #7	ENSGT00950000183011.c.a.a #8	ENSGT00940000158947 #9	ENSGT00390000016950 #10	ENSGT00390000018003.a #11	ENSGT00940000163318 #12	ENSGT00390000003368.d #13	ENSGT00940000158152 #14	ENSGT00940000157504 #15	ENSGT00390000007725.A.b #16	ENSGT00390000012496.a #18	ENSGT00390000019377.b #19	ENSGT00940000162602 #20	ENSGT00940000160364 #21	ENSGT01050000244827.B #22	ENSGT00940000154840.b #23	ENSGT00940000155177.b #24	ENSGT01030000234540.E #25	ENSGT00940000158367 #26	ENSGT00940000161722	ENSGT00940000164746	ENSGT00940000154334.k #28	ENSGT00940000157300 #29	ENSGT00940000157498 #31	ENSGT00940000158856 #32	ENSGT00940000156336 #36	ENSGT00940000153859.a #37	ENSGT00390000013693	ENSGT00940000159013	ENSGT00940000153724.A
Northern American deer mouse	MODERN SPECIES	19	Bcas2 (ENSPEMG00000023530)	Dennd2c (ENSPEMG00000002658) #7	Ampd1 (ENSPEMG00000017567) #8	Nras (ENSPEMG00000029639) #9	Csde1 (ENSPEMG00000020357) #10	Sike1 (ENSPEMG00000020550) #11	Nr1h5 (ENSPEMG00000021165) #12	Sycp1 (ENSPEMG00000023338) #13	Tshb (ENSPEMG00000024182) #14	Tspan2 (ENSPEMG00000023387) #15	Ngf (ENSPEMG00000001587) #16	Vangl1 (ENSPEMG00000026640) #18	Casq2 (ENSPEMG00000012959) #19	Nhlh2 (ENSPEMG00000025983) #20	Slc22a15 (ENSPEMG00000023603) #21	Mab21l3 (ENSPEMG00000023035) #22	Atp1a1 (ENSPEMG00000010999) #23	Igsf3 (ENSPEMG00000011916) #24	Cd2 (ENSPEMG00000018550) #25	Ptgfrn (ENSPEMG00000009682) #26	Cd101 (ENSPEMG00000008402)	ENSPEMG00000010330	ENSPEMG00000010451	Trim45 (ENSPEMG00000007787) #28	ENSPEMG00000027103 #29	Man1a2 (ENSPEMG00000007670) #31	ENSPEMG00000031182 #32	Gdap2 (ENSPEMG00000020913) #36	Wdr3 (ENSPEMG00000011928) #37	Spag17 (ENSPEMG00000012291)	Tbx15 (ENSPEMG00000026645)
Prairie vole	MODERN SPECIES	8	Dennd2c (ENSMOCG00000009830) #7	Ampd1 (ENSMOCG00000010785) #8	Nras (ENSMOCG00000022441) #9	Csde1 (ENSMOCG00000018960) #10	ENSMOCG00000009367	Sike1 (ENSMOCG00000000516) #11	Nr1h5 (ENSMOCG00000012316) #12	Sycp1 (ENSMOCG00000009622) #13	Tshb (ENSMOCG00000006126) #14	Tspan2 (ENSMOCG00000003591) #15	Ngf (ENSMOCG00000021179) #16	Vangl1 (ENSMOCG00000018281) #18	Casq2 (ENSMOCG00000014851) #19	Nhlh2 (ENSMOCG00000007572) #20	ENSMOCG00000020465 #21	Mab21l3 (ENSMOCG00000016617) #22	Atp1a1 (ENSMOCG00000006963) #23	Igsf3 (ENSMOCG00000005813) #24	Ptgfrn (ENSMOCG00000020768) #26	Ttf2 (ENSMOCG00000008415) #27	Trim45 (ENSMOCG00000000422) #28	Vtcn1 (ENSMOCG00000000748) #29	Man1a2 (ENSMOCG00000020901) #31	Tent5c (ENSMOCG00000018840) #32	Gdap2 (ENSMOCG00000011700) #36	Wdr3 (ENSMOCG00000014361) #37	Spag17 (ENSMOCG00000001590)	ENSMOCG00000009935	Tbx15 (ENSMOCG00000012596)	Wars2 (ENSMOCG00000005144)	ENSMOCG00000020989
Murinae	ANCESTRAL SPECIES	5	ENSGT00390000014494	ENSGT00950000182931.B.a.b #7	ENSGT00950000183011.c.a.a #8	ENSGT00940000158947 #9	ENSGT00390000016950 #10	ENSGT00390000018003.a #11	ENSGT00940000163318 #12	ENSGT00390000003368.d #13	ENSGT00940000158152 #14	ENSGT00940000157504 #15	ENSGT00390000007725.A.b #16	ENSGT00390000012496.a #18	ENSGT00390000019377.b #19	ENSGT00940000162602 #20	ENSGT00940000160364 #21	ENSGT01050000244827.B #22	ENSGT00940000154840.b #23	ENSGT00940000155177.b #24	ENSGT01030000234540.E #25	ENSGT00940000158367 #26	ENSGT00940000161722	ENSGT00940000162718 #27	ENSGT00940000154334.k #28	ENSGT00940000157300 #29	ENSGT00940000157498 #31	ENSGT00940000158856 #32	ENSGT00940000156336 #36	ENSGT00940000153859.a #37	ENSGT00390000013693	ENSGT00940000159013	ENSGT00940000153724.A
Mus	ANCESTRAL SPECIES	7	ENSGT00390000014494	ENSGT00950000182931.B.a.b #7	ENSGT00950000183011.c.a.a #8	ENSGT00940000158947 #9	ENSGT00390000016950 #10	ENSGT00390000018003.a #11	ENSGT00940000163318 #12	ENSGT00390000003368.d #13	ENSGT00940000158152 #14	ENSGT00940000157504 #15	ENSGT00390000007725.A.b #16	ENSGT00390000012496.a #18	ENSGT00390000019377.b #19	ENSGT00940000162602 #20	ENSGT00940000160364 #21	ENSGT01050000244827.B #22	ENSGT00940000154840.b #23	ENSGT00940000155177.b #24	ENSGT01030000234540.E #25	ENSGT00940000158367 #26	ENSGT00940000161722	ENSGT00940000162718 #27	ENSGT00940000154334.k #28	ENSGT00940000157300 #29	ENSGT00940000157498 #31	ENSGT00940000158856 #32	ENSGT00940000156336 #36	ENSGT00940000153859.a #37	ENSGT00390000013693	ENSGT00940000159013	ENSGT00940000153724.A
Mus_A	ANCESTRAL SPECIES	9	ENSGT00390000014494	ENSGT00950000182931.B.a.b #7	ENSGT00950000183011.c.a.a #8	ENSGT00940000158947 #9	ENSGT00390000016950 #10	ENSGT00390000018003.a #11	ENSGT00940000163318 #12	ENSGT00390000003368.d #13	ENSGT00940000158152 #14	ENSGT00940000157504 #15	ENSGT00390000007725.A.b #16	ENSGT00390000012496.a #18	ENSGT00390000019377.b #19	ENSGT00940000162602 #20	ENSGT00940000160364 #21	ENSGT01050000244827.B #22	ENSGT00940000154840.b #23	ENSGT00940000155177.b #24	ENSGT01030000234540.E #25	ENSGT00940000158367 #26	ENSGT00940000161722	ENSGT00940000162718 #27	ENSGT00940000154334.k #28	ENSGT00940000157300 #29	ENSGT00940000157498 #31	ENSGT00940000158856 #32	ENSGT00940000156336 #36	ENSGT00940000153859.a #37	ENSGT00390000013693	ENSGT00940000159013	ENSGT00940000153724.A
Mus_B	ANCESTRAL SPECIES	8	ENSGT00390000014494	ENSGT00950000182931.B.a.b #7	ENSGT00950000183011.c.a.a #8	ENSGT00940000158947 #9	ENSGT00390000016950 #10	ENSGT00390000018003.a #11	ENSGT00940000163318 #12	ENSGT00390000003368.d #13	ENSGT00940000158152 #14	ENSGT00940000157504 #15	ENSGT00390000007725.A.b #16	ENSGT00390000012496.a #18	ENSGT00390000019377.b #19	ENSGT00940000162602 #20	ENSGT00940000160364 #21	ENSGT01050000244827.B #22	ENSGT00940000154840.b #23	ENSGT00940000155177.b #24	ENSGT01030000234540.E #25	ENSGT00940000158367 #26	ENSGT00940000161722	ENSGT00940000162718 #27	ENSGT00940000154334.k #28	ENSGT00940000157300 #29	ENSGT00940000157498 #31	ENSGT00940000158856 #32	ENSGT00940000156336 #36	ENSGT00940000153859.a #37	ENSGT00390000013693	ENSGT00940000159013	ENSGT00940000153724.A
Mus_C	ANCESTRAL SPECIES	6	ENSGT00390000014494	ENSGT00950000182931.B.a.b #7	ENSGT00950000183011.c.a.a #8	ENSGT00940000158947 #9	ENSGT00390000016950 #10	ENSGT00390000018003.a #11	ENSGT00940000163318 #12	ENSGT00390000003368.d #13	ENSGT00940000158152 #14	ENSGT00940000157504 #15	ENSGT00390000007725.A.b #16	ENSGT00390000012496.a #18	ENSGT00390000019377.b #19	ENSGT00940000162602 #20	ENSGT00940000160364 #21	ENSGT01050000244827.B #22	ENSGT00940000154840.b #23	ENSGT00940000155177.b #24	ENSGT01030000234540.E #25	ENSGT00940000158367 #26	ENSGT00940000161722	ENSGT00940000162718 #27	ENSGT00940000154334.k #28	ENSGT00940000157300 #29	ENSGT00940000157498 #31	ENSGT00940000158856 #32	ENSGT00940000156336 #36	ENSGT00940000153859.a #37	ENSGT00390000013693	ENSGT00940000159013	ENSGT00940000153724.A
Steppe mouse	MODERN SPECIES	3036												Casq2 (ENSMSIG00000017951) #19	ENSMSIG00000017944	Nhlh2 (ENSMSIG00000017937) #20	Slc22a15 (ENSMSIG00000017867) #21	Mab21l3 (ENSMSIG00000017843) #22	ENSMSIG00000017831	Atp1a1 (ENSMSIG00000017781) #23	Igsf3 (ENSMSIG00000017718) #24	Cd2 (ENSMSIG00000017692) #25	Ptgfrn (ENSMSIG00000017639) #26	Cd101 (ENSMSIG00000017562)	Ttf2 (ENSMSIG00000017516) #27	ENSMSIG00000017406 #28	Vtcn1 (ENSMSIG00000017388) #29	Man1a2 (ENSMSIG00000017361) #31	Tent5c (ENSMSIG00000017352) #32
spretus	MODERN SPECIES	12	Bcas2 (MGP_SPRETEiJ_G0026398)	Dennd2c (MGP_SPRETEiJ_G0026397) #7	Ampd1 (MGP_SPRETEiJ_G0026396) #8	Nras (MGP_SPRETEiJ_G0026395) #9	Csde1 (MGP_SPRETEiJ_G0026394) #10	Sike1 (MGP_SPRETEiJ_G0026393) #11	Nr1h5 (MGP_SPRETEiJ_G0026392) #12	Sycp1 (MGP_SPRETEiJ_G0026391) #13	Tshb (MGP_SPRETEiJ_G0026390) #14	Tspan2 (MGP_SPRETEiJ_G0026389) #15	Ngf (MGP_SPRETEiJ_G0026388) #16	Vangl1 (MGP_SPRETEiJ_G0026387) #18	Casq2 (MGP_SPRETEiJ_G0026386) #19	Nhlh2 (MGP_SPRETEiJ_G0026385) #20	Slc22a15 (MGP_SPRETEiJ_G0026384) #21	Mab21l3 (MGP_SPRETEiJ_G0026383) #22	Atp1a1 (MGP_SPRETEiJ_G0026382) #23	Igsf3 (MGP_SPRETEiJ_G0026381) #24	Cd2 (MGP_SPRETEiJ_G0026380) #25	Ptgfrn (MGP_SPRETEiJ_G0026379) #26	Cd101 (MGP_SPRETEiJ_G0026378)	Ttf2 (MGP_SPRETEiJ_G0026377) #27	Trim45 (MGP_SPRETEiJ_G0026376) #28	Vtcn1 (MGP_SPRETEiJ_G0026375) #29	Man1a2 (MGP_SPRETEiJ_G0026374) #31	Tent5c (MGP_SPRETEiJ_G0026373) #32	Gdap2 (MGP_SPRETEiJ_G0026372) #36	Wdr3 (MGP_SPRETEiJ_G0026371) #37	Spag17 (MGP_SPRETEiJ_G0026370)	Tbx15 (MGP_SPRETEiJ_G0026369)	Wars2 (MGP_SPRETEiJ_G0026368)
Mouse	MODERN SPECIES	12	Bcas2 (ENSMUSG00000005687)	Dennd2c (ENSMUSG00000007379) #7	Ampd1 (ENSMUSG00000070385) #8	Nras (ENSMUSG00000027852) #9	Csde1 (ENSMUSG00000068823) #10	Sike1 (ENSMUSG00000027854) #11	Nr1h5 (ENSMUSG00000048938) #12	Sycp1 (ENSMUSG00000027855) #13	Tshb (ENSMUSG00000027857) #14	Tspan2 (ENSMUSG00000027858) #15	Ngf (ENSMUSG00000027859) #16	Vangl1 (ENSMUSG00000027860) #18	Casq2 (ENSMUSG00000027861) #19	Nhlh2 (ENSMUSG00000048540) #20	Slc22a15 (ENSMUSG00000033147) #21	Mab21l3 (ENSMUSG00000044313) #22	Atp1a1 (ENSMUSG00000033161) #23	Igsf3 (ENSMUSG00000042035) #24	Cd2 (ENSMUSG00000027863) #25	Ptgfrn (ENSMUSG00000027864) #26	Cd101 (ENSMUSG00000086564)	Ttf2 (ENSMUSG00000033222) #27	Trim45 (ENSMUSG00000033233) #28	Vtcn1 (ENSMUSG00000051076) #29	Man1a2 (ENSMUSG00000008763) #31	Tent5c (ENSMUSG00000044468) #32	Gdap2 (ENSMUSG00000027865) #36	Wdr3 (ENSMUSG00000033285) #37	Spag17 (ENSMUSG00000027867)	Tbx15 (ENSMUSG00000027868)	Wars2 (ENSMUSG00000004233)
Ryukyu mouse	MODERN SPECIES	12	Bcas2 (MGP_CAROLIEiJ_G0025448)	Dennd2c (MGP_CAROLIEiJ_G0025447) #7	Ampd1 (MGP_CAROLIEiJ_G0025446) #8	Nras (MGP_CAROLIEiJ_G0025445) #9	Csde1 (MGP_CAROLIEiJ_G0025444) #10	Sike1 (MGP_CAROLIEiJ_G0025443) #11	Nr1h5 (MGP_CAROLIEiJ_G0025442) #12	MGP_CAROLIEiJ_G0025441 ##13	Tshb (MGP_CAROLIEiJ_G0025440) #14	Tspan2 (MGP_CAROLIEiJ_G0025439) #15	Ngf (MGP_CAROLIEiJ_G0025438) #16	Vangl1 (MGP_CAROLIEiJ_G0025437) #18	Casq2 (MGP_CAROLIEiJ_G0025436) #19	Nhlh2 (MGP_CAROLIEiJ_G0025435) #20	Slc22a15 (MGP_CAROLIEiJ_G0025434) #21	Mab21l3 (MGP_CAROLIEiJ_G0025433) #22	Atp1a1 (MGP_CAROLIEiJ_G0025432) #23	Igsf3 (MGP_CAROLIEiJ_G0025431) #24	Cd2 (MGP_CAROLIEiJ_G0025430) #25	Ptgfrn (MGP_CAROLIEiJ_G0025429) #26	Cd101 (MGP_CAROLIEiJ_G0025428)	Ttf2 (MGP_CAROLIEiJ_G0025427) #27	MGP_CAROLIEiJ_G0025426 #28	Vtcn1 (MGP_CAROLIEiJ_G0025425) #29	Man1a2 (MGP_CAROLIEiJ_G0025424) #31	Tent5c (MGP_CAROLIEiJ_G0025423) #32	Gdap2 (MGP_CAROLIEiJ_G0025422) #36	Wdr3 (MGP_CAROLIEiJ_G0025421) #37	Spag17 (MGP_CAROLIEiJ_G0025420)	Tbx15 (MGP_CAROLIEiJ_G0025419)	MGP_CAROLIEiJ_G0025418
Shrew mouse	MODERN SPECIES	17	Bcas2 (MGP_PahariEiJ_G0026892)	Dennd2c (MGP_PahariEiJ_G0026891) #7	Ampd1 (MGP_PahariEiJ_G0026890) #8	Nras (MGP_PahariEiJ_G0026889) #9	Csde1 (MGP_PahariEiJ_G0026888) #10	Sike1 (MGP_PahariEiJ_G0026887) #11	Nr1h5 (MGP_PahariEiJ_G0026886) #12	Sycp1 (MGP_PahariEiJ_G0026885) #13	Tshb (MGP_PahariEiJ_G0026884) #14	Tspan2 (MGP_PahariEiJ_G0026883) #15	Ngf (MGP_PahariEiJ_G0026882) #16	Vangl1 (MGP_PahariEiJ_G0026881) #18	Casq2 (MGP_PahariEiJ_G0026880) #19	Nhlh2 (MGP_PahariEiJ_G0026879) #20	Slc22a15 (MGP_PahariEiJ_G0026878) #21	Mab21l3 (MGP_PahariEiJ_G0026877) #22	Atp1a1 (MGP_PahariEiJ_G0026876) #23	Igsf3 (MGP_PahariEiJ_G0026875) #24	Cd2 (MGP_PahariEiJ_G0026874) #25	Ptgfrn (MGP_PahariEiJ_G0026873) #26	Cd101 (MGP_PahariEiJ_G0026872)	Ttf2 (MGP_PahariEiJ_G0026871) #27	MGP_PahariEiJ_G0026870 #28	Vtcn1 (MGP_PahariEiJ_G0026869) #29	Man1a2 (MGP_PahariEiJ_G0026868) #31	Tent5c (MGP_PahariEiJ_G0026867) #32	Gdap2 (MGP_PahariEiJ_G0026866) #36	Wdr3 (MGP_PahariEiJ_G0026865) #37	Spag17 (MGP_PahariEiJ_G0026864)	Tbx15 (MGP_PahariEiJ_G0026863)	Wars2 (MGP_PahariEiJ_G0026862)
Rat	MODERN SPECIES	11	Bcas2 (ENSRNOG00000018783)	Dennd2c (ENSRNOG00000018716) #7	Ampd1 (ENSRNOG00000018656) #8	Nras (ENSRNOG00000023079) #9	Csde1 (ENSRNOG00000061058) #10	Sike1 (ENSRNOG00000017502) #11	Nr1h5 (ENSRNOG00000023073) #12	Sycp1 (ENSRNOG00000016835) #13	Tshb (ENSRNOG00000016793) #14	Tspan2 (ENSRNOG00000023338) #15	Ngf (ENSRNOG00000016571) #16	Vangl1 (ENSRNOG00000016477) #18	Casq2 (ENSRNOG00000016243) #19	Nhlh2 (ENSRNOG00000054375) #20	Slc22a15 (ENSRNOG00000033051) #21	Mab21l3 (ENSRNOG00000016044) #22	Atp1a1 (ENSRNOG00000030019) #23	Igsf3 (ENSRNOG00000023851) #24	Cd2 (ENSRNOG00000015821) #25	ENSRNOG00000069649	Ptgfrn (ENSRNOG00000015655) #26	Cd101 (ENSRNOG00000037190)	Ttf2 (ENSRNOG00000057761) #27	Trim45 (ENSRNOG00000015347) #28	Vtcn1 (ENSRNOG00000015279) #29	ENSRNOG00000067753	Man1a2 (ENSRNOG00000015226) #31	Tent5c (ENSRNOG00000070242) #32	Gdap2 (ENSRNOG00000019754) #36	Wdr3 (ENSRNOG00000019670) #37	Spag17 (ENSRNOG00000037196)
Upper Galilee mountains blind mole rat	MODERN SPECIES	868	Bcas2 (ENSNGAG00000011988)	Dennd2c (ENSNGAG00000023499) #7	Ampd1 (ENSNGAG00000023553) #8	Nras (ENSNGAG00000007289) #9	ENSNGAG00000021929 #10	Sike1 (ENSNGAG00000016770) #11	Nr1h5 (ENSNGAG00000010800) #12	Sycp1 (ENSNGAG00000012549) #13	Tshb (ENSNGAG00000001574) #14	Tspan2 (ENSNGAG00000014905) #15	Ngf (ENSNGAG00000018398) #16	Vangl1 (ENSNGAG00000021078) #18	Casq2 (ENSNGAG00000012360) #19	Nhlh2 (ENSNGAG00000022644) #20	ENSNGAG00000017546 #21	Mab21l3 (ENSNGAG00000013724) #22	Atp1a1 (ENSNGAG00000022692) #23	Igsf3 (ENSNGAG00000024078) #24	Cd2 (ENSNGAG00000015298) #25
Kangaroo rat	MODERN SPECIES	397	Trim33 (ENSDORG00000005438)	Bcas2 (ENSDORG00000014220)	Dennd2c (ENSDORG00000014222) #7	Ampd1 (ENSDORG00000005377) #8	Nras (ENSDORG00000025267) #9	Csde1 (ENSDORG00000011609) #10	Sike1 (ENSDORG00000005162) #11	ENSDORG00000027896 #13	Tshb (ENSDORG00000003238) #14	Tspan2 (ENSDORG00000003239) #15	Ngf (ENSDORG00000025001) #16	Vangl1 (ENSDORG00000013118) #18	Casq2 (ENSDORG00000013122) #19	ENSDORG00000010026 #21	ENSDORG00000028402 #21	Mab21l3 (ENSDORG00000010259) #22	Atp1a1 (ENSDORG00000028959) #23	Igsf3 (ENSDORG00000010085) #24	Ptgfrn (ENSDORG00000013777) #26	Cd101 (ENSDORG00000013779)	Ttf2 (ENSDORG00000013781) #27	Vtcn1 (ENSDORG00000013786) #29	Man1a2 (ENSDORG00000025695) #31	Tent5c (ENSDORG00000010159) #32	Gdap2 (ENSDORG00000001079) #36	Wdr3 (ENSDORG00000011031) #37	Spag17 (ENSDORG00000011032)	ENSDORG00000023254	Tbx15 (ENSDORG00000005620)	Wars2 (ENSDORG00000008562)	Hao2 (ENSDORG00000003236)
Rodentia_A	ANCESTRAL SPECIES		ENSGT00390000014494	ENSGT00950000182931.B.a.b #7	ENSGT00950000183011.c.a.a #8	ENSGT00940000158947 #9	ENSGT00390000016950 #10	ENSGT00390000018003.a #11	ENSGT00940000163318 #12	ENSGT00390000003368.d #13	ENSGT00940000158152 #14	ENSGT00940000157504 #15	ENSGT00390000007725.A.b #16	ENSGT00390000012496.a #18	ENSGT00390000019377.b #19	ENSGT00940000162602 #20	ENSGT00940000160364 #21	ENSGT01050000244827.B #22	ENSGT00940000154840.b #23	ENSGT00940000155177.b #24	ENSGT01030000234540.E #25	ENSGT00940000158367 #26	ENSGT00940000161722	ENSGT00940000162718 #27	ENSGT00940000154334.k #28	ENSGT00940000157300 #29	ENSGT00940000157498 #31	ENSGT00940000158856 #32	ENSGT00940000156336 #36	ENSGT00940000153859.a #37	ENSGT00390000013693	ENSGT00940000159013	ENSGT00940000153724.A
Sciuridae	ANCESTRAL SPECIES		ENSGT00390000014494	ENSGT00950000182931.B.a.b #7	ENSGT00950000183011.c.a.a #8	ENSGT00940000158947 #9	ENSGT00390000016950 #10	ENSGT00390000018003.a #11	ENSGT00940000163318 #12	ENSGT00390000003368.d #13	ENSGT00940000158152 #14	ENSGT00940000157504 #15	ENSGT00390000007725.A.b #16	ENSGT00390000012496.a #18	ENSGT00390000019377.b #19	ENSGT00940000162602 #20	ENSGT00940000160364 #21	ENSGT01050000244827.B #22	ENSGT00940000154840.b #23	ENSGT00940000155177.b #24	ENSGT01030000234540.E #25	ENSGT00940000158367 #26	ENSGT00940000161722	ENSGT00940000162718 #27	ENSGT00940000154334.k #28	ENSGT00940000157300 #29	ENSGT00940000157498 #31	ENSGT00940000158856 #32	ENSGT00940000156336 #36	ENSGT00940000153859.a #37	ENSGT00390000013693	ENSGT00940000159013	ENSGT00940000153724.A
Marmotini	ANCESTRAL SPECIES	62	ENSGT00390000014494	ENSGT00950000182931.B.a.b #7	ENSGT00950000183011.c.a.a #8	ENSGT00940000158947 #9	ENSGT00390000016950 #10	ENSGT00390000018003.a #11	ENSGT00940000163318 #12	ENSGT00390000003368.d #13	ENSGT00940000158152 #14	ENSGT00940000157504 #15	ENSGT00390000007725.A.b #16	ENSGT00390000012496.a #18	ENSGT00390000019377.b #19	ENSGT00940000162602 #20	ENSGT00940000160364 #21	ENSGT01050000244827.B #22	ENSGT00940000154840.b #23	ENSGT00940000155177.b #24	ENSGT01030000234540.E #25	ENSGT00940000158367 #26	ENSGT00940000161722	ENSGT00940000162718 #27	ENSGT00940000154334.k #28	ENSGT00940000157300 #29	ENSGT00940000157498 #31	ENSGT00940000158856 #32	ENSGT00940000156336 #36	ENSGT00940000153859.a #37	ENSGT00390000013693	ENSGT00940000159013	ENSGT00940000153724.A
Marmotini_b	ANCESTRAL SPECIES	74	ENSGT00390000014494	ENSGT00950000182931.B.a.b #7	ENSGT00950000183011.c.a.a #8	ENSGT00940000158947 #9	ENSGT00390000016950 #10	ENSGT00390000018003.a #11	ENSGT00940000163318 #12	ENSGT00390000003368.d #13	ENSGT00940000158152 #14	ENSGT00940000157504 #15	ENSGT00390000007725.A.b #16	ENSGT00390000012496.a #18	ENSGT00390000019377.b #19	ENSGT00940000162602 #20	ENSGT00940000160364 #21	ENSGT01050000244827.B #22	ENSGT00940000154840.b #23	ENSGT00940000155177.b #24	ENSGT01030000234540.E #25	ENSGT00940000158367 #26	ENSGT00940000161722	ENSGT00940000162718 #27	ENSGT00940000154334.k #28	ENSGT00940000157300 #29	ENSGT00940000157498 #31	ENSGT00940000158856 #32	ENSGT00940000156336 #36	ENSGT00940000153859.a #37	ENSGT00390000013693	ENSGT00940000159013	ENSGT00940000153724.A
Arctic ground squirrel	MODERN SPECIES	134	BCAS2 (ENSUPAG00010022333)	DENND2C (ENSUPAG00010022334) #7	AMPD1 (ENSUPAG00010022337) #8	NRAS (ENSUPAG00010022339) #9	CSDE1 (ENSUPAG00010022340) #10	SIKE1 (ENSUPAG00010022488) #11	ENSUPAG00010022495 #12	SYCP1 (ENSUPAG00010022501) #13	TSHB (ENSUPAG00010022509) #14	TSPAN2 (ENSUPAG00010022515) #15	NGF (ENSUPAG00010022522) #16	VANGL1 (ENSUPAG00010022525) #18	CASQ2 (ENSUPAG00010022531) #19	NHLH2 (ENSUPAG00010022533) #20	SLC22A15 (ENSUPAG00010022536) #21	MAB21L3 (ENSUPAG00010022542) #22	ATP1A1 (ENSUPAG00010022544) #23
Squirrel	MODERN SPECIES	227			AMPD1 (ENSSTOG00000015082) #8	NRAS (ENSSTOG00000023151) #9	ENSSTOG00000032722 #10	SIKE1 (ENSSTOG00000001684) #11	ENSSTOG00000027072 #12	ENSSTOG00000010304 #13	TSHB (ENSSTOG00000022113) #14	TSPAN2 (ENSSTOG00000020353) #15	NGF (ENSSTOG00000005518) #16	VANGL1 (ENSSTOG00000015734) #18	CASQ2 (ENSSTOG00000015738) #19	NHLH2 (ENSSTOG00000019698) #20	SLC22A15 (ENSSTOG00000016141) #21	MAB21L3 (ENSSTOG00000026516) #22	ATP1A1 (ENSSTOG00000016127) #23	IGSF3 (ENSSTOG00000022906) #24	CD2 (ENSSTOG00000004188) #25	PTGFRN (ENSSTOG00000010916) #26	CD101 (ENSSTOG00000010919)	TTF2 (ENSSTOG00000010927) #27	ENSSTOG00000034928	TRIM45 (ENSSTOG00000007369) #28	VTCN1 (ENSSTOG00000007389) #29	MAN1A2 (ENSSTOG00000016016) #31	TENT5C (ENSSTOG00000010392) #32	GDAP2 (ENSSTOG00000024699) #36	WDR3 (ENSSTOG00000003504) #37	SPAG17 (ENSSTOG00000003532)	TBX15 (ENSSTOG00000013040)
Alpin marmot	MODERN SPECIES	79	AMPD1 (ENSMMMG00000014396) #8	NRAS (ENSMMMG00000014434) #9	CSDE1 (ENSMMMG00000014448) #10	SIKE1 (ENSMMMG00000014866) #11	ENSMMMG00000014870	ENSMMMG00000014879 #12	SYCP1 (ENSMMMG00000014892) #13	ENSMMMG00000014952	TSHB (ENSMMMG00000014957) #14	TSPAN2 (ENSMMMG00000014968) #15	NGF (ENSMMMG00000014973) #16	VANGL1 (ENSMMMG00000014977) #18	CASQ2 (ENSMMMG00000014991) #19	NHLH2 (ENSMMMG00000015011) #20	SLC22A15 (ENSMMMG00000015020) #21	MAB21L3 (ENSMMMG00000015051) #22	ATP1A1 (ENSMMMG00000015066) #23	IGSF3 (ENSMMMG00000015107) #24	CD2 (ENSMMMG00000015127) #25	PTGFRN (ENSMMMG00000015141) #26	CD101 (ENSMMMG00000015154)	TTF2 (ENSMMMG00000015196) #27	ENSMMMG00000015205	TRIM45 (ENSMMMG00000015213) #28	VTCN1 (ENSMMMG00000015255) #29	MAN1A2 (ENSMMMG00000015283) #31	TENT5C (ENSMMMG00000015304) #32	GDAP2 (ENSMMMG00000015308) #36	WDR3 (ENSMMMG00000015336) #37	ENSMMMG00000015354	TBX15 (ENSMMMG00000015373)
Eurasian red squirrel	MODERN SPECIES		DENND2C (ENSSVLG00005000379) #7	AMPD1 (ENSSVLG00005000465) #8	ENSSVLG00005000492 #9	CSDE1 (ENSSVLG00005000559) #10	SIKE1 (ENSSVLG00005000707) #11	ENSSVLG00005000743 #12	SYCP1 (ENSSVLG00005000819) #13	TSHB (ENSSVLG00005000935) #14	TSPAN2 (ENSSVLG00005000967) #15	NGF (ENSSVLG00005001008) #16	ENSSVLG00005001021	VANGL1 (ENSSVLG00005001032) #18	CASQ2 (ENSSVLG00005001056) #19	NHLH2 (ENSSVLG00005001085) #20	SLC22A15 (ENSSVLG00005001098) #21	MAB21L3 (ENSSVLG00005001135) #22	ATP1A1 (ENSSVLG00005001182) #23	ENSSVLG00005001215	IGSF3 (ENSSVLG00005001236) #24	CD2 (ENSSVLG00005001265) #25	PTGFRN (ENSSVLG00005001283) #26	CD101 (ENSSVLG00005001302)	ENSSVLG00005001327 #27	ENSSVLG00005001350 #27	TRIM45 (ENSSVLG00005001388) #28	VTCN1 (ENSSVLG00005001433) #29	MAN1A2 (ENSSVLG00005001469) #31	TENT5C (ENSSVLG00005001495) #32	GDAP2 (ENSSVLG00005001518) #36	ENSSVLG00005001561	WDR3 (ENSSVLG00005001572) #37
Hystricomorpha	ANCESTRAL SPECIES	23	ENSGT00390000014494	ENSGT00950000182931.B.a.b #7	ENSGT00950000183011.c.a.a #8	ENSGT00940000158947 #9	ENSGT00390000016950 #10	ENSGT00390000018003.a #11	ENSGT00940000163318 #12	ENSGT00390000003368.d #13	ENSGT00940000158152 #14	ENSGT00940000157504 #15	ENSGT00390000007725.A.b #16	ENSGT00390000012496.a #18	ENSGT00390000019377.b #19	ENSGT00940000162602 #20	ENSGT00940000160364 #21	ENSGT01050000244827.B #22	ENSGT00940000154840.b #23	ENSGT00940000155177.b #24	ENSGT01030000234540.E #25	ENSGT00940000158367 #26	ENSGT00940000161722	ENSGT00940000162718 #27	ENSGT00940000154334.k #28	ENSGT00940000157300 #29	ENSGT00940000157498 #31	ENSGT00940000158856 #32	ENSGT00940000156336 #36	ENSGT00940000153859.a #37	ENSGT00390000013693	ENSGT00940000159013	ENSGT00940000153724.A.i
Naked mole-rat female	MODERN SPECIES	10	ENSHGLG00000009388 #9	CSDE1 (ENSHGLG00000009620) #10	SIKE1 (ENSHGLG00000015408) #11	ENSHGLG00000032648	ENSHGLG00000004974 #12	ENSHGLG00000047308	ENSHGLG00000006103 #13	TSHB (ENSHGLG00000014600) #14	TSPAN2 (ENSHGLG00000010786) #15	NGF (ENSHGLG00000044577) #16	ENSHGLG00000032979	VANGL1 (ENSHGLG00000016399) #18	CASQ2 (ENSHGLG00000038257) #19	NHLH2 (ENSHGLG00000046588) #20	SLC22A15 (ENSHGLG00000011061) #21	MAB21L3 (ENSHGLG00000009205) #22	ATP1A1 (ENSHGLG00000009304) #23	IGSF3 (ENSHGLG00000018539) #24	CD2 (ENSHGLG00000014947) #25	PTGFRN (ENSHGLG00000019106) #26	CD101 (ENSHGLG00000018298)	TTF2 (ENSHGLG00000012459) #27	TRIM45 (ENSHGLG00000017735) #28	VTCN1 (ENSHGLG00000018792) #29	ENSHGLG00000045985	MAN1A2 (ENSHGLG00000017646) #31	FAM46C (ENSHGLG00000043157) #32	ENSHGLG00000041120	ENSHGLG00000017537 #36	WDR3 (ENSHGLG00000017936) #37	SPAG17 (ENSHGLG00000009162)
Hystricomorpha_a	ANCESTRAL SPECIES	14	ENSGT00390000014494	ENSGT00950000182931.B.a.b #7	ENSGT00950000183011.c.a.a #8	ENSGT00940000158947 #9	ENSGT00390000016950 #10	ENSGT00390000018003.a #11	ENSGT00940000163318 #12	ENSGT00390000003368.d #13	ENSGT00940000158152 #14	ENSGT00940000157504 #15	ENSGT00390000007725.A.b #16	ENSGT00390000012496.a #18	ENSGT00390000019377.b #19	ENSGT00940000162602 #20	ENSGT00940000160364 #21	ENSGT01050000244827.B #22	ENSGT00940000154840.b #23	ENSGT00940000155177.b #24	ENSGT01030000234540.E #25	ENSGT00940000158367 #26	ENSGT00940000161722	ENSGT00940000164746	ENSGT00940000167338	ENSGT00940000154334.k #28	ENSGT00940000157300 #29	ENSGT00940000157498 #31	ENSGT00940000158856 #32	ENSGT00940000156336 #36	ENSGT00940000153859.a #37	ENSGT00390000013693	ENSGT00940000159013
Guinea pig	MODERN SPECIES	2	BCAS2 (ENSCPOG00000020532)	DENND2C (ENSCPOG00000012944) #7	AMPD1 (ENSCPOG00000002591) #8	NRAS (ENSCPOG00000021833) #9	CSDE1 (ENSCPOG00000040388) #10	SIKE1 (ENSCPOG00000007406) #11	ENSCPOG00000009115	SYCP1 (ENSCPOG00000012690) #13	TSHB (ENSCPOG00000030694) #14	TSPAN2 (ENSCPOG00000008376) #15	NGF (ENSCPOG00000024033) #16	VANGL1 (ENSCPOG00000001701) #18	CASQ2 (ENSCPOG00000001703) #19	NHLH2 (ENSCPOG00000026593) #20	SLC22A15 (ENSCPOG00000009506) #21	MAB21L3 (ENSCPOG00000009511) #22	ATP1A1 (ENSCPOG00000000927) #23	IGSF3 (ENSCPOG00000002029) #24	CD2 (ENSCPOG00000036418) #25	PTGFRN (ENSCPOG00000015740) #26	CD101 (ENSCPOG00000015741)	ENSCPOG00000000605	VTCN1 (ENSCPOG00000034001) #29	MAN1A2 (ENSCPOG00000004935) #31	TENT5C (ENSCPOG00000035573) #32	GDAP2 (ENSCPOG00000012599) #36	WDR3 (ENSCPOG00000011305) #37	SPAG17 (ENSCPOG00000011317)	TBX15 (ENSCPOG00000000615)	WARS2 (ENSCPOG00000000616)	ENSCPOG00000001451
Hystricomorpha_b	ANCESTRAL SPECIES	6	ENSGT00390000014494	ENSGT00950000182931.B.a.b #7	ENSGT00950000183011.c.a.a #8	ENSGT00940000158947 #9	ENSGT00390000016950 #10	ENSGT00390000018003.a #11	ENSGT00940000163318 #12	ENSGT00390000003368.d #13	ENSGT00940000158152 #14	ENSGT00940000157504 #15	ENSGT00390000007725.A.b #16	ENSGT00390000012496.a #18	ENSGT00390000019377.b #19	ENSGT00940000162602 #20	ENSGT00940000160364 #21	ENSGT01050000244827.B #22	ENSGT00940000154840.b #23	ENSGT00940000155177.b #24	ENSGT01030000234540.E #25	ENSGT00940000158367 #26	ENSGT00940000161722	ENSGT00940000167338	ENSGT00940000154334.k #28	ENSGT00940000157300 #29	ENSGT00940000157498 #31	ENSGT00940000158856 #32	ENSGT00940000156336 #36	ENSGT00940000153859.a #37	ENSGT00390000013693	ENSGT00940000159013	ENSGT00940000153724.A.i
Long-tailed chinchilla	MODERN SPECIES	142	DENND2C (ENSCLAG00000006608) #7	AMPD1 (ENSCLAG00000006645) #8	NRAS (ENSCLAG00000005888) #9	CSDE1 (ENSCLAG00000006618) #10	SIKE1 (ENSCLAG00000005344) #11	ENSCLAG00000006997	ENSCLAG00000013132 #12	ENSCLAG00000004900 ##13	TSHB (ENSCLAG00000011105) #14	TSPAN2 (ENSCLAG00000007865) #15	NGF (ENSCLAG00000004815) #16	VANGL1 (ENSCLAG00000006270) #18	CASQ2 (ENSCLAG00000007972) #19	NHLH2 (ENSCLAG00000005691) #20	SLC22A15 (ENSCLAG00000006619) #21	MAB21L3 (ENSCLAG00000004428) #22	ATP1A1 (ENSCLAG00000005733) #23	IGSF3 (ENSCLAG00000006923) #24	CD2 (ENSCLAG00000007838) #25	PTGFRN (ENSCLAG00000008229) #26	CD101 (ENSCLAG00000010019)	ENSCLAG00000014230	TRIM45 (ENSCLAG00000010898) #28	VTCN1 (ENSCLAG00000014982) #29	MAN1A2 (ENSCLAG00000008573) #31	TENT5C (ENSCLAG00000006985) #32	ENSCLAG00000007247	GDAP2 (ENSCLAG00000008843) #36	WDR3 (ENSCLAG00000010657) #37	SPAG17 (ENSCLAG00000006388)	TBX15 (ENSCLAG00000008292)
Degu	MODERN SPECIES	181	NRAS (ENSODEG00000007937) #9	ENSODEG00000007383 #10	SIKE1 (ENSODEG00000007343) #11	ENSODEG00000010107 #12	SYCP1 (ENSODEG00000006927) #13	TSHB (ENSODEG00000009005) #14	TSPAN2 (ENSODEG00000007319) #15	NGF (ENSODEG00000006538) #16	ENSODEG00000006379	ENSODEG00000008957	ENSODEG00000008559	VANGL1 (ENSODEG00000010599) #18	CASQ2 (ENSODEG00000009014) #19	NHLH2 (ENSODEG00000008157) #20	SLC22A15 (ENSODEG00000007565) #21	MAB21L3 (ENSODEG00000005924) #22	ATP1A1 (ENSODEG00000006810) #23	ENSODEG00000006132	IGSF3 (ENSODEG00000007439) #24	ENSODEG00000006855	PTGFRN (ENSODEG00000006807) #26	CD101 (ENSODEG00000006286)	ENSODEG00000006362	TRIM45 (ENSODEG00000007020) #28	VTCN1 (ENSODEG00000006757) #29	MAN1A2 (ENSODEG00000005674) #31	TENT5C (ENSODEG00000006187) #32	ENSODEG00000005813
Lagomorpha	ANCESTRAL SPECIES	1	ENSGT00390000014494	ENSGT00950000182931.B.a.b #7	ENSGT00950000183011.c.a.a #8	ENSGT00940000158947 #9	ENSGT00390000016950 #10	ENSGT00390000018003.a #11	ENSGT00940000163318 #12	ENSGT00390000003368.c.b ##13	ENSGT00940000158152 #14	ENSGT00940000157504 #15	ENSGT00390000007725.A.b #16	ENSGT00390000012496.a #18	ENSGT00390000019377.b #19	ENSGT00940000162602 #20	ENSGT00940000160364 #21	ENSGT01050000244827.B #22	ENSGT00940000154840.b #23	ENSGT00940000155177.b #24	ENSGT01030000234540.E #25	ENSGT00940000158367 #26	ENSGT00940000161722	ENSGT00940000162718 #27	ENSGT00940000154334.k #28	ENSGT00940000157300 #29	ENSGT00940000157498 #31	ENSGT00940000158856 #32	ENSGT00940000156336 #36	ENSGT00940000153859.a #37	ENSGT00390000013693	ENSGT00940000159013	ENSGT00940000153724.A
Rabbit	MODERN SPECIES	4	BCAS2 (ENSOCUG00000016784)	DENND2C (ENSOCUG00000016789) #7	AMPD1 (ENSOCUG00000016424) #8	NRAS (ENSOCUG00000022455) #9	CSDE1 (ENSOCUG00000016438) #10	SIKE1 (ENSOCUG00000016457) #11	ENSOCUG00000023188 #12	ENSOCUG00000022499	ENSOCUG00000016463 ##13	Tshb (ENSOCUG00000023876) #14	TSPAN2 (ENSOCUG00000001279) #15	NGF (ENSOCUG00000000659) #16	VANGL1 (ENSOCUG00000016240) #18	CASQ2 (ENSOCUG00000010594) #19	SLC22A15 (ENSOCUG00000015370) #21	MAB21L3 (ENSOCUG00000015382) #22	ATP1A1 (ENSOCUG00000001324) #23	IGSF3 (ENSOCUG00000005284) #24	CD2 (ENSOCUG00000008474) #25	PTGFRN (ENSOCUG00000000608) #26	CD101 (ENSOCUG00000000612)	TTF2 (ENSOCUG00000000613) #27	TRIM45 (ENSOCUG00000000237) #28	VTCN1 (ENSOCUG00000026343) #29	MAN1A2 (ENSOCUG00000012648) #31	ENSOCUG00000026654	ENSOCUG00000027717	GDAP2 (ENSOCUG00000007568) #36	WDR3 (ENSOCUG00000007572) #37	SPAG17 (ENSOCUG00000007586)	TBX15 (ENSOCUG00000012320)