Rodentia	ANCESTRAL SPECIES		ENSGT00390000014494 #7	ENSGT00950000182931.B.a.b #8	ENSGT00950000183011.c.a.a #9	ENSGT00940000158947 #10	ENSGT00390000016950 #11	ENSGT00390000018003.a #12	ENSGT00940000163318 #13	ENSGT00390000003368.d #14	ENSGT00940000158152 #15	ENSGT00940000157504 #16	ENSGT00390000007725.A.b #17	ENSGT00390000012496.a #18	ENSGT00390000019377.b #19	ENSGT00940000162602 #20	ENSGT00940000160364 #21	ENSGT01050000244827.B #22	ENSGT00940000154840.b #24	ENSGT00940000155177.b #26	ENSGT01030000234540.E #27	ENSGT00940000158367 #28	ENSGT00940000161722 #29	ENSGT00940000162718	ENSGT00940000154334.k #31	ENSGT00940000157300 #32	ENSGT00940000157498 #33	ENSGT00940000158856 #34	ENSGT00940000156336 #36	ENSGT00940000153859.a #37	ENSGT00390000013693	ENSGT00940000159013	ENSGT00940000153724.A
Rodentia_B	ANCESTRAL SPECIES		ENSGT00390000014494 #7	ENSGT00950000182931.B.a.b #8	ENSGT00950000183011.c.a.a #9	ENSGT00940000158947 #10	ENSGT00390000016950 #11	ENSGT00390000018003.a #12	ENSGT00940000163318 #13	ENSGT00390000003368.d #14	ENSGT00940000158152 #15	ENSGT00940000157504 #16	ENSGT00390000007725.A.b #17	ENSGT00390000012496.a #18	ENSGT00390000019377.b #19	ENSGT00940000162602 #20	ENSGT00940000160364 #21	ENSGT01050000244827.B #22	ENSGT00940000154840.b #24	ENSGT00940000155177.b #26	ENSGT01030000234540.E #27	ENSGT00940000158367 #28	ENSGT00940000161722 #29	ENSGT00940000162718	ENSGT00940000154334.k #31	ENSGT00940000157300 #32	ENSGT00940000157498 #33	ENSGT00940000158856 #34	ENSGT00940000156336 #36	ENSGT00940000153859.a #37	ENSGT00390000013693	ENSGT00940000159013	ENSGT00940000153724.A
Myomorpha	ANCESTRAL SPECIES	12	ENSGT00390000014494 #7	ENSGT00950000182931.B.a.b #8	ENSGT00950000183011.c.a.a #9	ENSGT00940000158947 #10	ENSGT00390000016950 #11	ENSGT00390000018003.a #12	ENSGT00940000163318 #13	ENSGT00390000003368.d #14	ENSGT00940000158152 #15	ENSGT00940000157504 #16	ENSGT00390000007725.A.b #17	ENSGT00390000012496.a #18	ENSGT00390000019377.b #19	ENSGT00940000162602 #20	ENSGT00940000160364 #21	ENSGT01050000244827.B #22	ENSGT00940000154840.b #24	ENSGT00940000155177.b #26	ENSGT01030000234540.E #27	ENSGT00940000158367 #28	ENSGT00940000161722 #29	ENSGT00940000162718	ENSGT00940000154334.k #31	ENSGT00940000157300 #32	ENSGT00940000157498 #33	ENSGT00940000158856 #34	ENSGT00940000156336 #36	ENSGT00940000153859.a #37	ENSGT00390000013693	ENSGT00940000159013	ENSGT00940000153724.A
Muroidea	ANCESTRAL SPECIES	6	ENSGT00390000014494 #7	ENSGT00950000182931.B.a.b #8	ENSGT00950000183011.c.a.a #9	ENSGT00940000158947 #10	ENSGT00390000016950 #11	ENSGT00390000018003.a #12	ENSGT00940000163318 #13	ENSGT00390000003368.d #14	ENSGT00940000158152 #15	ENSGT00940000157504 #16	ENSGT00390000007725.A.b #17	ENSGT00390000012496.a #18	ENSGT00390000019377.b #19	ENSGT00940000162602 #20	ENSGT00940000160364 #21	ENSGT01050000244827.B #22	ENSGT00940000154840.b #24	ENSGT00940000155177.b #26	ENSGT01030000234540.E #27	ENSGT00940000158367 #28	ENSGT00940000161722 #29	ENSGT00940000162718	ENSGT00940000154334.k #31	ENSGT00940000157300 #32	ENSGT00940000157498 #33	ENSGT00940000158856 #34	ENSGT00940000156336 #36	ENSGT00940000153859.a #37	ENSGT00390000013693	ENSGT00940000159013	ENSGT00940000153724.A
Muroidea_A	ANCESTRAL SPECIES	5	ENSGT00390000014494 #7	ENSGT00950000182931.B.a.b #8	ENSGT00950000183011.c.a.a #9	ENSGT00940000158947 #10	ENSGT00390000016950 #11	ENSGT00390000018003.a #12	ENSGT00940000163318 #13	ENSGT00390000003368.d #14	ENSGT00940000158152 #15	ENSGT00940000157504 #16	ENSGT00390000007725.A.b #17	ENSGT00390000012496.a #18	ENSGT00390000019377.b #19	ENSGT00940000162602 #20	ENSGT00940000160364 #21	ENSGT01050000244827.B #22	ENSGT00940000154840.b #24	ENSGT00940000155177.b #26	ENSGT01030000234540.E #27	ENSGT00940000158367 #28	ENSGT00940000161722 #29	ENSGT00940000162718	ENSGT00940000154334.k #31	ENSGT00940000157300 #32	ENSGT00940000157498 #33	ENSGT00940000158856 #34	ENSGT00940000156336 #36	ENSGT00940000153859.a #37	ENSGT00390000013693	ENSGT00940000159013	ENSGT00940000153724.A
Cricetidae	ANCESTRAL SPECIES	6	ENSGT00390000014494 #7	ENSGT00950000182931.B.a.b #8	ENSGT00950000183011.c.a.a #9	ENSGT00940000158947 #10	ENSGT00390000016950 #11	ENSGT00390000018003.a #12	ENSGT00940000163318 #13	ENSGT00390000003368.d #14	ENSGT00940000158152 #15	ENSGT00940000157504 #16	ENSGT00390000007725.A.b #17	ENSGT00390000012496.a #18	ENSGT00390000019377.b #19	ENSGT00940000162602 #20	ENSGT00940000160364 #21	ENSGT01050000244827.B #22	ENSGT00940000154840.b #24	ENSGT00940000155177.b #26	ENSGT01030000234540.E #27	ENSGT00940000158367 #28	ENSGT00940000161722 #29	ENSGT00940000165376 #30	ENSGT00940000162718	ENSGT00940000154334.k #31	ENSGT00940000157300 #32	ENSGT00940000157498 #33	ENSGT00940000158856 #34	ENSGT00940000156336 #36	ENSGT00940000153859.a #37	ENSGT00390000013693	ENSGT00940000159013
Cricetinae	ANCESTRAL SPECIES	12	ENSGT00390000014494 #7	ENSGT00950000182931.B.a.b #8	ENSGT00950000183011.c.a.a #9	ENSGT00940000158947 #10	ENSGT00390000016950 #11	ENSGT00390000018003.a #12	ENSGT00940000163318 #13	ENSGT00390000003368.d #14	ENSGT00940000158152 #15	ENSGT00940000157504 #16	ENSGT00390000007725.A.b #17	ENSGT00390000012496.a #18	ENSGT00390000019377.b #19	ENSGT00940000162602 #20	ENSGT00940000160364 #21	ENSGT01050000244827.B #22	ENSGT00940000154840.b #24	ENSGT00940000155177.b #26	ENSGT01030000234540.E #27	ENSGT00940000158367 #28	ENSGT00940000161722 #29	ENSGT00940000165376 #30	ENSGT00940000154334.k #31	ENSGT00940000157300 #32	ENSGT00940000157498 #33	ENSGT00940000158856 #34	ENSGT00940000156336 #36	ENSGT00940000153859.a #37	ENSGT00390000013693	ENSGT00940000159013	ENSGT00940000153724.A
Golden Hamster	MODERN SPECIES	681	Bcas2 (ENSMAUG00000013855) #7	Dennd2c (ENSMAUG00000013289) #8	Ampd1 (ENSMAUG00000001096) #9	Nras (ENSMAUG00000019927) #10	Csde1 (ENSMAUG00000014031) #11	Sike1 (ENSMAUG00000012482) #12	Nr1h5 (ENSMAUG00000010803) #13	Sycp1 (ENSMAUG00000000328) #14	Tshb (ENSMAUG00000005156) #15	Tspan2 (ENSMAUG00000004539) #16	ENSMAUG00000002276 #17	Vangl1 (ENSMAUG00000009480) #18	Casq2 (ENSMAUG00000000284) #19	Nhlh2 (ENSMAUG00000016936) #20	Slc22a15 (ENSMAUG00000010758) #21	Mab21l3 (ENSMAUG00000009568) #22	ENSMAUG00000008452 #23	Atp1a1 (ENSMAUG00000017136) #24	ENSMAUG00000017849 #25	Igsf3 (ENSMAUG00000013987) #26	Cd2 (ENSMAUG00000012774) #27	Ptgfrn (ENSMAUG00000002851) #28	Cd101 (ENSMAUG00000017674) #29	ENSMAUG00000016725 #30	Trim45 (ENSMAUG00000013623) #31	Vtcn1 (ENSMAUG00000015061) #32	Man1a2 (ENSMAUG00000000417) #33	Tent5c (ENSMAUG00000017728) #34	ENSMAUG00000017297 #35	Gdap2 (ENSMAUG00000014132) #36	Wdr3 (ENSMAUG00000002574) #37
Chinese hamster chok1gshd	MODERN SPECIES	66	Ampd1 (ENSCGRG00001014246) #9	Nras (ENSCGRG00001020093) #10	ENSCGRG00001016833 #11	ENSCGRG00001011859	Sike1 (ENSCGRG00001023509) #12	Nr1h5 (ENSCGRG00001022882) #13	Sycp1 (ENSCGRG00001010102) #14	ENSCGRG00001006375	Tshb (ENSCGRG00001012202) #15	Tspan2 (ENSCGRG00001014655) #16	Ngf (ENSCGRG00001000250) #17	Vangl1 (ENSCGRG00001022127) #18	Casq2 (ENSCGRG00001013746) #19	Nhlh2 (ENSCGRG00001009328) #20	Slc22a15 (ENSCGRG00001018525) #21	Mab21l3 (ENSCGRG00001018373) #22	Atp1a1 (ENSCGRG00001024330) #24	Igsf3 (ENSCGRG00001017829) #26	Cd2 (ENSCGRG00001019348) #27	Ptgfrn (ENSCGRG00001022148) #28	Cd101 (ENSCGRG00001024359) #29	ENSCGRG00001006277 #30	Trim45 (ENSCGRG00001000157) #31	Vtcn1 (ENSCGRG00001015357) #32	Man1a2 (ENSCGRG00001020266) #33	Tent5c (ENSCGRG00001005586) #34	Gdap2 (ENSCGRG00001012369) #36	Wdr3 (ENSCGRG00001019544) #37	Spag17 (ENSCGRG00001013560)	Tbx15 (ENSCGRG00001024224)	Wars2 (ENSCGRG00001018718)
Cricetidae_B	ANCESTRAL SPECIES	3	ENSGT00390000014494 #7	ENSGT00950000182931.B.a.b #8	ENSGT00950000183011.c.a.a #9	ENSGT00940000158947 #10	ENSGT00390000016950 #11	ENSGT00390000018003.a #12	ENSGT00940000163318 #13	ENSGT00390000003368.d #14	ENSGT00940000158152 #15	ENSGT00940000157504 #16	ENSGT00390000007725.A.b #17	ENSGT00390000012496.a #18	ENSGT00390000019377.b #19	ENSGT00940000162602 #20	ENSGT00940000160364 #21	ENSGT01050000244827.B #22	ENSGT00940000154840.b #24	ENSGT00940000155177.b #26	ENSGT01030000234540.E #27	ENSGT00940000158367 #28	ENSGT00940000161722 #29	ENSGT00940000164746	ENSGT00940000154334.k #31	ENSGT00940000157300 #32	ENSGT00940000157498 #33	ENSGT00940000158856 #34	ENSGT00940000156336 #36	ENSGT00940000153859.a #37	ENSGT00390000013693	ENSGT00940000159013	ENSGT00940000153724.A
Northern American deer mouse	MODERN SPECIES	19	Bcas2 (ENSPEMG00000023530) #7	Dennd2c (ENSPEMG00000002658) #8	Ampd1 (ENSPEMG00000017567) #9	Nras (ENSPEMG00000029639) #10	Csde1 (ENSPEMG00000020357) #11	Sike1 (ENSPEMG00000020550) #12	Nr1h5 (ENSPEMG00000021165) #13	Sycp1 (ENSPEMG00000023338) #14	Tshb (ENSPEMG00000024182) #15	Tspan2 (ENSPEMG00000023387) #16	Ngf (ENSPEMG00000001587) #17	Vangl1 (ENSPEMG00000026640) #18	Casq2 (ENSPEMG00000012959) #19	Nhlh2 (ENSPEMG00000025983) #20	Slc22a15 (ENSPEMG00000023603) #21	Mab21l3 (ENSPEMG00000023035) #22	Atp1a1 (ENSPEMG00000010999) #24	Igsf3 (ENSPEMG00000011916) #26	Cd2 (ENSPEMG00000018550) #27	Ptgfrn (ENSPEMG00000009682) #28	Cd101 (ENSPEMG00000008402) #29	ENSPEMG00000010330	ENSPEMG00000010451	Trim45 (ENSPEMG00000007787) #31	ENSPEMG00000027103 #32	Man1a2 (ENSPEMG00000007670) #33	ENSPEMG00000031182 #34	Gdap2 (ENSPEMG00000020913) #36	Wdr3 (ENSPEMG00000011928) #37	Spag17 (ENSPEMG00000012291)	Tbx15 (ENSPEMG00000026645)
Prairie vole	MODERN SPECIES	8	Dennd2c (ENSMOCG00000009830) #8	Ampd1 (ENSMOCG00000010785) #9	Nras (ENSMOCG00000022441) #10	Csde1 (ENSMOCG00000018960) #11	ENSMOCG00000009367	Sike1 (ENSMOCG00000000516) #12	Nr1h5 (ENSMOCG00000012316) #13	Sycp1 (ENSMOCG00000009622) #14	Tshb (ENSMOCG00000006126) #15	Tspan2 (ENSMOCG00000003591) #16	Ngf (ENSMOCG00000021179) #17	Vangl1 (ENSMOCG00000018281) #18	Casq2 (ENSMOCG00000014851) #19	Nhlh2 (ENSMOCG00000007572) #20	ENSMOCG00000020465 #21	Mab21l3 (ENSMOCG00000016617) #22	Atp1a1 (ENSMOCG00000006963) #24	Igsf3 (ENSMOCG00000005813) #26	Ptgfrn (ENSMOCG00000020768) #28	Ttf2 (ENSMOCG00000008415)	Trim45 (ENSMOCG00000000422) #31	Vtcn1 (ENSMOCG00000000748) #32	Man1a2 (ENSMOCG00000020901) #33	Tent5c (ENSMOCG00000018840) #34	Gdap2 (ENSMOCG00000011700) #36	Wdr3 (ENSMOCG00000014361) #37	Spag17 (ENSMOCG00000001590)	ENSMOCG00000009935	Tbx15 (ENSMOCG00000012596)	Wars2 (ENSMOCG00000005144)	ENSMOCG00000020989
Murinae	ANCESTRAL SPECIES	5	ENSGT00390000014494 #7	ENSGT00950000182931.B.a.b #8	ENSGT00950000183011.c.a.a #9	ENSGT00940000158947 #10	ENSGT00390000016950 #11	ENSGT00390000018003.a #12	ENSGT00940000163318 #13	ENSGT00390000003368.d #14	ENSGT00940000158152 #15	ENSGT00940000157504 #16	ENSGT00390000007725.A.b #17	ENSGT00390000012496.a #18	ENSGT00390000019377.b #19	ENSGT00940000162602 #20	ENSGT00940000160364 #21	ENSGT01050000244827.B #22	ENSGT00940000154840.b #24	ENSGT00940000155177.b #26	ENSGT01030000234540.E #27	ENSGT00940000158367 #28	ENSGT00940000161722 #29	ENSGT00940000162718	ENSGT00940000154334.k #31	ENSGT00940000157300 #32	ENSGT00940000157498 #33	ENSGT00940000158856 #34	ENSGT00940000156336 #36	ENSGT00940000153859.a #37	ENSGT00390000013693	ENSGT00940000159013	ENSGT00940000153724.A
Mus	ANCESTRAL SPECIES	7	ENSGT00390000014494 #7	ENSGT00950000182931.B.a.b #8	ENSGT00950000183011.c.a.a #9	ENSGT00940000158947 #10	ENSGT00390000016950 #11	ENSGT00390000018003.a #12	ENSGT00940000163318 #13	ENSGT00390000003368.d #14	ENSGT00940000158152 #15	ENSGT00940000157504 #16	ENSGT00390000007725.A.b #17	ENSGT00390000012496.a #18	ENSGT00390000019377.b #19	ENSGT00940000162602 #20	ENSGT00940000160364 #21	ENSGT01050000244827.B #22	ENSGT00940000154840.b #24	ENSGT00940000155177.b #26	ENSGT01030000234540.E #27	ENSGT00940000158367 #28	ENSGT00940000161722 #29	ENSGT00940000162718	ENSGT00940000154334.k #31	ENSGT00940000157300 #32	ENSGT00940000157498 #33	ENSGT00940000158856 #34	ENSGT00940000156336 #36	ENSGT00940000153859.a #37	ENSGT00390000013693	ENSGT00940000159013	ENSGT00940000153724.A
Mus_A	ANCESTRAL SPECIES	9	ENSGT00390000014494 #7	ENSGT00950000182931.B.a.b #8	ENSGT00950000183011.c.a.a #9	ENSGT00940000158947 #10	ENSGT00390000016950 #11	ENSGT00390000018003.a #12	ENSGT00940000163318 #13	ENSGT00390000003368.d #14	ENSGT00940000158152 #15	ENSGT00940000157504 #16	ENSGT00390000007725.A.b #17	ENSGT00390000012496.a #18	ENSGT00390000019377.b #19	ENSGT00940000162602 #20	ENSGT00940000160364 #21	ENSGT01050000244827.B #22	ENSGT00940000154840.b #24	ENSGT00940000155177.b #26	ENSGT01030000234540.E #27	ENSGT00940000158367 #28	ENSGT00940000161722 #29	ENSGT00940000162718	ENSGT00940000154334.k #31	ENSGT00940000157300 #32	ENSGT00940000157498 #33	ENSGT00940000158856 #34	ENSGT00940000156336 #36	ENSGT00940000153859.a #37	ENSGT00390000013693	ENSGT00940000159013	ENSGT00940000153724.A
Mus_B	ANCESTRAL SPECIES	8	ENSGT00390000014494 #7	ENSGT00950000182931.B.a.b #8	ENSGT00950000183011.c.a.a #9	ENSGT00940000158947 #10	ENSGT00390000016950 #11	ENSGT00390000018003.a #12	ENSGT00940000163318 #13	ENSGT00390000003368.d #14	ENSGT00940000158152 #15	ENSGT00940000157504 #16	ENSGT00390000007725.A.b #17	ENSGT00390000012496.a #18	ENSGT00390000019377.b #19	ENSGT00940000162602 #20	ENSGT00940000160364 #21	ENSGT01050000244827.B #22	ENSGT00940000154840.b #24	ENSGT00940000155177.b #26	ENSGT01030000234540.E #27	ENSGT00940000158367 #28	ENSGT00940000161722 #29	ENSGT00940000162718	ENSGT00940000154334.k #31	ENSGT00940000157300 #32	ENSGT00940000157498 #33	ENSGT00940000158856 #34	ENSGT00940000156336 #36	ENSGT00940000153859.a #37	ENSGT00390000013693	ENSGT00940000159013	ENSGT00940000153724.A
Mus_C	ANCESTRAL SPECIES	6	ENSGT00390000014494 #7	ENSGT00950000182931.B.a.b #8	ENSGT00950000183011.c.a.a #9	ENSGT00940000158947 #10	ENSGT00390000016950 #11	ENSGT00390000018003.a #12	ENSGT00940000163318 #13	ENSGT00390000003368.d #14	ENSGT00940000158152 #15	ENSGT00940000157504 #16	ENSGT00390000007725.A.b #17	ENSGT00390000012496.a #18	ENSGT00390000019377.b #19	ENSGT00940000162602 #20	ENSGT00940000160364 #21	ENSGT01050000244827.B #22	ENSGT00940000154840.b #24	ENSGT00940000155177.b #26	ENSGT01030000234540.E #27	ENSGT00940000158367 #28	ENSGT00940000161722 #29	ENSGT00940000162718	ENSGT00940000154334.k #31	ENSGT00940000157300 #32	ENSGT00940000157498 #33	ENSGT00940000158856 #34	ENSGT00940000156336 #36	ENSGT00940000153859.a #37	ENSGT00390000013693	ENSGT00940000159013	ENSGT00940000153724.A
Steppe mouse	MODERN SPECIES	3036												Casq2 (ENSMSIG00000017951) #19	ENSMSIG00000017944	Nhlh2 (ENSMSIG00000017937) #20	Slc22a15 (ENSMSIG00000017867) #21	Mab21l3 (ENSMSIG00000017843) #22	ENSMSIG00000017831	Atp1a1 (ENSMSIG00000017781) #24	Igsf3 (ENSMSIG00000017718) #26	Cd2 (ENSMSIG00000017692) #27	Ptgfrn (ENSMSIG00000017639) #28	Cd101 (ENSMSIG00000017562) #29	Ttf2 (ENSMSIG00000017516)	ENSMSIG00000017406 #31	Vtcn1 (ENSMSIG00000017388) #32	Man1a2 (ENSMSIG00000017361) #33	Tent5c (ENSMSIG00000017352) #34
spretus	MODERN SPECIES	12	Bcas2 (MGP_SPRETEiJ_G0026398) #7	Dennd2c (MGP_SPRETEiJ_G0026397) #8	Ampd1 (MGP_SPRETEiJ_G0026396) #9	Nras (MGP_SPRETEiJ_G0026395) #10	Csde1 (MGP_SPRETEiJ_G0026394) #11	Sike1 (MGP_SPRETEiJ_G0026393) #12	Nr1h5 (MGP_SPRETEiJ_G0026392) #13	Sycp1 (MGP_SPRETEiJ_G0026391) #14	Tshb (MGP_SPRETEiJ_G0026390) #15	Tspan2 (MGP_SPRETEiJ_G0026389) #16	Ngf (MGP_SPRETEiJ_G0026388) #17	Vangl1 (MGP_SPRETEiJ_G0026387) #18	Casq2 (MGP_SPRETEiJ_G0026386) #19	Nhlh2 (MGP_SPRETEiJ_G0026385) #20	Slc22a15 (MGP_SPRETEiJ_G0026384) #21	Mab21l3 (MGP_SPRETEiJ_G0026383) #22	Atp1a1 (MGP_SPRETEiJ_G0026382) #24	Igsf3 (MGP_SPRETEiJ_G0026381) #26	Cd2 (MGP_SPRETEiJ_G0026380) #27	Ptgfrn (MGP_SPRETEiJ_G0026379) #28	Cd101 (MGP_SPRETEiJ_G0026378) #29	Ttf2 (MGP_SPRETEiJ_G0026377)	Trim45 (MGP_SPRETEiJ_G0026376) #31	Vtcn1 (MGP_SPRETEiJ_G0026375) #32	Man1a2 (MGP_SPRETEiJ_G0026374) #33	Tent5c (MGP_SPRETEiJ_G0026373) #34	Gdap2 (MGP_SPRETEiJ_G0026372) #36	Wdr3 (MGP_SPRETEiJ_G0026371) #37	Spag17 (MGP_SPRETEiJ_G0026370)	Tbx15 (MGP_SPRETEiJ_G0026369)	Wars2 (MGP_SPRETEiJ_G0026368)
Mouse	MODERN SPECIES	12	Bcas2 (ENSMUSG00000005687) #7	Dennd2c (ENSMUSG00000007379) #8	Ampd1 (ENSMUSG00000070385) #9	Nras (ENSMUSG00000027852) #10	Csde1 (ENSMUSG00000068823) #11	Sike1 (ENSMUSG00000027854) #12	Nr1h5 (ENSMUSG00000048938) #13	Sycp1 (ENSMUSG00000027855) #14	Tshb (ENSMUSG00000027857) #15	Tspan2 (ENSMUSG00000027858) #16	Ngf (ENSMUSG00000027859) #17	Vangl1 (ENSMUSG00000027860) #18	Casq2 (ENSMUSG00000027861) #19	Nhlh2 (ENSMUSG00000048540) #20	Slc22a15 (ENSMUSG00000033147) #21	Mab21l3 (ENSMUSG00000044313) #22	Atp1a1 (ENSMUSG00000033161) #24	Igsf3 (ENSMUSG00000042035) #26	Cd2 (ENSMUSG00000027863) #27	Ptgfrn (ENSMUSG00000027864) #28	Cd101 (ENSMUSG00000086564) #29	Ttf2 (ENSMUSG00000033222)	Trim45 (ENSMUSG00000033233) #31	Vtcn1 (ENSMUSG00000051076) #32	Man1a2 (ENSMUSG00000008763) #33	Tent5c (ENSMUSG00000044468) #34	Gdap2 (ENSMUSG00000027865) #36	Wdr3 (ENSMUSG00000033285) #37	Spag17 (ENSMUSG00000027867)	Tbx15 (ENSMUSG00000027868)	Wars2 (ENSMUSG00000004233)
Ryukyu mouse	MODERN SPECIES	12	Bcas2 (MGP_CAROLIEiJ_G0025448) #7	Dennd2c (MGP_CAROLIEiJ_G0025447) #8	Ampd1 (MGP_CAROLIEiJ_G0025446) #9	Nras (MGP_CAROLIEiJ_G0025445) #10	Csde1 (MGP_CAROLIEiJ_G0025444) #11	Sike1 (MGP_CAROLIEiJ_G0025443) #12	Nr1h5 (MGP_CAROLIEiJ_G0025442) #13	MGP_CAROLIEiJ_G0025441 ##14	Tshb (MGP_CAROLIEiJ_G0025440) #15	Tspan2 (MGP_CAROLIEiJ_G0025439) #16	Ngf (MGP_CAROLIEiJ_G0025438) #17	Vangl1 (MGP_CAROLIEiJ_G0025437) #18	Casq2 (MGP_CAROLIEiJ_G0025436) #19	Nhlh2 (MGP_CAROLIEiJ_G0025435) #20	Slc22a15 (MGP_CAROLIEiJ_G0025434) #21	Mab21l3 (MGP_CAROLIEiJ_G0025433) #22	Atp1a1 (MGP_CAROLIEiJ_G0025432) #24	Igsf3 (MGP_CAROLIEiJ_G0025431) #26	Cd2 (MGP_CAROLIEiJ_G0025430) #27	Ptgfrn (MGP_CAROLIEiJ_G0025429) #28	Cd101 (MGP_CAROLIEiJ_G0025428) #29	Ttf2 (MGP_CAROLIEiJ_G0025427)	MGP_CAROLIEiJ_G0025426 #31	Vtcn1 (MGP_CAROLIEiJ_G0025425) #32	Man1a2 (MGP_CAROLIEiJ_G0025424) #33	Tent5c (MGP_CAROLIEiJ_G0025423) #34	Gdap2 (MGP_CAROLIEiJ_G0025422) #36	Wdr3 (MGP_CAROLIEiJ_G0025421) #37	Spag17 (MGP_CAROLIEiJ_G0025420)	Tbx15 (MGP_CAROLIEiJ_G0025419)	MGP_CAROLIEiJ_G0025418
Shrew mouse	MODERN SPECIES	17	Bcas2 (MGP_PahariEiJ_G0026892) #7	Dennd2c (MGP_PahariEiJ_G0026891) #8	Ampd1 (MGP_PahariEiJ_G0026890) #9	Nras (MGP_PahariEiJ_G0026889) #10	Csde1 (MGP_PahariEiJ_G0026888) #11	Sike1 (MGP_PahariEiJ_G0026887) #12	Nr1h5 (MGP_PahariEiJ_G0026886) #13	Sycp1 (MGP_PahariEiJ_G0026885) #14	Tshb (MGP_PahariEiJ_G0026884) #15	Tspan2 (MGP_PahariEiJ_G0026883) #16	Ngf (MGP_PahariEiJ_G0026882) #17	Vangl1 (MGP_PahariEiJ_G0026881) #18	Casq2 (MGP_PahariEiJ_G0026880) #19	Nhlh2 (MGP_PahariEiJ_G0026879) #20	Slc22a15 (MGP_PahariEiJ_G0026878) #21	Mab21l3 (MGP_PahariEiJ_G0026877) #22	Atp1a1 (MGP_PahariEiJ_G0026876) #24	Igsf3 (MGP_PahariEiJ_G0026875) #26	Cd2 (MGP_PahariEiJ_G0026874) #27	Ptgfrn (MGP_PahariEiJ_G0026873) #28	Cd101 (MGP_PahariEiJ_G0026872) #29	Ttf2 (MGP_PahariEiJ_G0026871)	MGP_PahariEiJ_G0026870 #31	Vtcn1 (MGP_PahariEiJ_G0026869) #32	Man1a2 (MGP_PahariEiJ_G0026868) #33	Tent5c (MGP_PahariEiJ_G0026867) #34	Gdap2 (MGP_PahariEiJ_G0026866) #36	Wdr3 (MGP_PahariEiJ_G0026865) #37	Spag17 (MGP_PahariEiJ_G0026864)	Tbx15 (MGP_PahariEiJ_G0026863)	Wars2 (MGP_PahariEiJ_G0026862)
Rat	MODERN SPECIES	11	Bcas2 (ENSRNOG00000018783) #7	Dennd2c (ENSRNOG00000018716) #8	Ampd1 (ENSRNOG00000018656) #9	Nras (ENSRNOG00000023079) #10	Csde1 (ENSRNOG00000061058) #11	Sike1 (ENSRNOG00000017502) #12	Nr1h5 (ENSRNOG00000023073) #13	Sycp1 (ENSRNOG00000016835) #14	Tshb (ENSRNOG00000016793) #15	Tspan2 (ENSRNOG00000023338) #16	Ngf (ENSRNOG00000016571) #17	Vangl1 (ENSRNOG00000016477) #18	Casq2 (ENSRNOG00000016243) #19	Nhlh2 (ENSRNOG00000054375) #20	Slc22a15 (ENSRNOG00000033051) #21	Mab21l3 (ENSRNOG00000016044) #22	Atp1a1 (ENSRNOG00000030019) #24	Igsf3 (ENSRNOG00000023851) #26	Cd2 (ENSRNOG00000015821) #27	ENSRNOG00000069649	Ptgfrn (ENSRNOG00000015655) #28	Cd101 (ENSRNOG00000037190) #29	Ttf2 (ENSRNOG00000057761)	Trim45 (ENSRNOG00000015347) #31	Vtcn1 (ENSRNOG00000015279) #32	ENSRNOG00000067753	Man1a2 (ENSRNOG00000015226) #33	Tent5c (ENSRNOG00000070242) #34	Gdap2 (ENSRNOG00000019754) #36	Wdr3 (ENSRNOG00000019670) #37	Spag17 (ENSRNOG00000037196)
Upper Galilee mountains blind mole rat	MODERN SPECIES	868	Bcas2 (ENSNGAG00000011988) #7	Dennd2c (ENSNGAG00000023499) #8	Ampd1 (ENSNGAG00000023553) #9	Nras (ENSNGAG00000007289) #10	ENSNGAG00000021929 #11	Sike1 (ENSNGAG00000016770) #12	Nr1h5 (ENSNGAG00000010800) #13	Sycp1 (ENSNGAG00000012549) #14	Tshb (ENSNGAG00000001574) #15	Tspan2 (ENSNGAG00000014905) #16	Ngf (ENSNGAG00000018398) #17	Vangl1 (ENSNGAG00000021078) #18	Casq2 (ENSNGAG00000012360) #19	Nhlh2 (ENSNGAG00000022644) #20	ENSNGAG00000017546 #21	Mab21l3 (ENSNGAG00000013724) #22	Atp1a1 (ENSNGAG00000022692) #24	Igsf3 (ENSNGAG00000024078) #26	Cd2 (ENSNGAG00000015298) #27
Lesser Egyptian jerboa	MODERN SPECIES	144	Dennd2c (ENSJJAG00000009709) #8	Ampd1 (ENSJJAG00000021675) #9	ENSJJAG00000020941 #10	Csde1 (ENSJJAG00000019571) #11	ENSJJAG00000019089 #12	Nr1h5 (ENSJJAG00000018578) #13	ENSJJAG00000018067 #14	Tshb (ENSJJAG00000001329) #15	Tspan2 (ENSJJAG00000000832) #16	Ngf (ENSJJAG00000022901) #17	ENSJJAG00000021722	Vangl1 (ENSJJAG00000021462) #18	Casq2 (ENSJJAG00000020862) #19	Nhlh2 (ENSJJAG00000019983) #20	Slc22a15 (ENSJJAG00000000255) #21	Mab21l3 (ENSJJAG00000022482) #22	Atp1a1 (ENSJJAG00000020791) #24	Igsf3 (ENSJJAG00000017489) #26	Cd2 (ENSJJAG00000019842) #27	Ptgfrn (ENSJJAG00000019616) #28	Ttf2 (ENSJJAG00000015225)	Trim45 (ENSJJAG00000007227) #31	Vtcn1 (ENSJJAG00000019207) #32	ENSJJAG00000018170	Man1a2 (ENSJJAG00000017865) #33	Tent5c (ENSJJAG00000013174) #34	ENSJJAG00000017333	ENSJJAG00000014767	ENSJJAG00000013768	ENSJJAG00000013505 #36	Wdr3 (ENSJJAG00000013861) #37
Kangaroo rat	MODERN SPECIES	397	Trim33 (ENSDORG00000005438)	Bcas2 (ENSDORG00000014220) #7	Dennd2c (ENSDORG00000014222) #8	Ampd1 (ENSDORG00000005377) #9	Nras (ENSDORG00000025267) #10	Csde1 (ENSDORG00000011609) #11	Sike1 (ENSDORG00000005162) #12	ENSDORG00000027896 #14	Tshb (ENSDORG00000003238) #15	Tspan2 (ENSDORG00000003239) #16	Ngf (ENSDORG00000025001) #17	Vangl1 (ENSDORG00000013118) #18	Casq2 (ENSDORG00000013122) #19	ENSDORG00000010026 #21	ENSDORG00000028402 #21	Mab21l3 (ENSDORG00000010259) #22	Atp1a1 (ENSDORG00000028959) #24	Igsf3 (ENSDORG00000010085) #26	Ptgfrn (ENSDORG00000013777) #28	Cd101 (ENSDORG00000013779) #29	Ttf2 (ENSDORG00000013781)	Vtcn1 (ENSDORG00000013786) #32	Man1a2 (ENSDORG00000025695) #33	Tent5c (ENSDORG00000010159) #34	Gdap2 (ENSDORG00000001079) #36	Wdr3 (ENSDORG00000011031) #37	Spag17 (ENSDORG00000011032)	ENSDORG00000023254	Tbx15 (ENSDORG00000005620)	Wars2 (ENSDORG00000008562)	Hao2 (ENSDORG00000003236)
Rodentia_A	ANCESTRAL SPECIES		ENSGT00390000014494 #7	ENSGT00950000182931.B.a.b #8	ENSGT00950000183011.c.a.a #9	ENSGT00940000158947 #10	ENSGT00390000016950 #11	ENSGT00390000018003.a #12	ENSGT00940000163318 #13	ENSGT00390000003368.d #14	ENSGT00940000158152 #15	ENSGT00940000157504 #16	ENSGT00390000007725.A.b #17	ENSGT00390000012496.a #18	ENSGT00390000019377.b #19	ENSGT00940000162602 #20	ENSGT00940000160364 #21	ENSGT01050000244827.B #22	ENSGT00940000154840.b #24	ENSGT00940000155177.b #26	ENSGT01030000234540.E #27	ENSGT00940000158367 #28	ENSGT00940000161722 #29	ENSGT00940000162718	ENSGT00940000154334.k #31	ENSGT00940000157300 #32	ENSGT00940000157498 #33	ENSGT00940000158856 #34	ENSGT00940000156336 #36	ENSGT00940000153859.a #37	ENSGT00390000013693	ENSGT00940000159013	ENSGT00940000153724.A
Sciuridae	ANCESTRAL SPECIES		ENSGT00390000014494 #7	ENSGT00950000182931.B.a.b #8	ENSGT00950000183011.c.a.a #9	ENSGT00940000158947 #10	ENSGT00390000016950 #11	ENSGT00390000018003.a #12	ENSGT00940000163318 #13	ENSGT00390000003368.d #14	ENSGT00940000158152 #15	ENSGT00940000157504 #16	ENSGT00390000007725.A.b #17	ENSGT00390000012496.a #18	ENSGT00390000019377.b #19	ENSGT00940000162602 #20	ENSGT00940000160364 #21	ENSGT01050000244827.B #22	ENSGT00940000154840.b #24	ENSGT00940000155177.b #26	ENSGT01030000234540.E #27	ENSGT00940000158367 #28	ENSGT00940000161722 #29	ENSGT00940000162718	ENSGT00940000154334.k #31	ENSGT00940000157300 #32	ENSGT00940000157498 #33	ENSGT00940000158856 #34	ENSGT00940000156336 #36	ENSGT00940000153859.a #37	ENSGT00390000013693	ENSGT00940000159013	ENSGT00940000153724.A
Marmotini	ANCESTRAL SPECIES	62	ENSGT00390000014494 #7	ENSGT00950000182931.B.a.b #8	ENSGT00950000183011.c.a.a #9	ENSGT00940000158947 #10	ENSGT00390000016950 #11	ENSGT00390000018003.a #12	ENSGT00940000163318 #13	ENSGT00390000003368.d #14	ENSGT00940000158152 #15	ENSGT00940000157504 #16	ENSGT00390000007725.A.b #17	ENSGT00390000012496.a #18	ENSGT00390000019377.b #19	ENSGT00940000162602 #20	ENSGT00940000160364 #21	ENSGT01050000244827.B #22	ENSGT00940000154840.b #24	ENSGT00940000155177.b #26	ENSGT01030000234540.E #27	ENSGT00940000158367 #28	ENSGT00940000161722 #29	ENSGT00940000162718	ENSGT00940000154334.k #31	ENSGT00940000157300 #32	ENSGT00940000157498 #33	ENSGT00940000158856 #34	ENSGT00940000156336 #36	ENSGT00940000153859.a #37	ENSGT00390000013693	ENSGT00940000159013	ENSGT00940000153724.A
Marmotini_b	ANCESTRAL SPECIES	74	ENSGT00390000014494 #7	ENSGT00950000182931.B.a.b #8	ENSGT00950000183011.c.a.a #9	ENSGT00940000158947 #10	ENSGT00390000016950 #11	ENSGT00390000018003.a #12	ENSGT00940000163318 #13	ENSGT00390000003368.d #14	ENSGT00940000158152 #15	ENSGT00940000157504 #16	ENSGT00390000007725.A.b #17	ENSGT00390000012496.a #18	ENSGT00390000019377.b #19	ENSGT00940000162602 #20	ENSGT00940000160364 #21	ENSGT01050000244827.B #22	ENSGT00940000154840.b #24	ENSGT00940000155177.b #26	ENSGT01030000234540.E #27	ENSGT00940000158367 #28	ENSGT00940000161722 #29	ENSGT00940000162718	ENSGT00940000154334.k #31	ENSGT00940000157300 #32	ENSGT00940000157498 #33	ENSGT00940000158856 #34	ENSGT00940000156336 #36	ENSGT00940000153859.a #37	ENSGT00390000013693	ENSGT00940000159013	ENSGT00940000153724.A
Arctic ground squirrel	MODERN SPECIES	134	BCAS2 (ENSUPAG00010022333) #7	DENND2C (ENSUPAG00010022334) #8	AMPD1 (ENSUPAG00010022337) #9	NRAS (ENSUPAG00010022339) #10	CSDE1 (ENSUPAG00010022340) #11	SIKE1 (ENSUPAG00010022488) #12	ENSUPAG00010022495 #13	SYCP1 (ENSUPAG00010022501) #14	TSHB (ENSUPAG00010022509) #15	TSPAN2 (ENSUPAG00010022515) #16	NGF (ENSUPAG00010022522) #17	VANGL1 (ENSUPAG00010022525) #18	CASQ2 (ENSUPAG00010022531) #19	NHLH2 (ENSUPAG00010022533) #20	SLC22A15 (ENSUPAG00010022536) #21	MAB21L3 (ENSUPAG00010022542) #22	ATP1A1 (ENSUPAG00010022544) #24
Squirrel	MODERN SPECIES	227			AMPD1 (ENSSTOG00000015082) #9	NRAS (ENSSTOG00000023151) #10	ENSSTOG00000032722 #11	SIKE1 (ENSSTOG00000001684) #12	ENSSTOG00000027072 #13	ENSSTOG00000010304 #14	TSHB (ENSSTOG00000022113) #15	TSPAN2 (ENSSTOG00000020353) #16	NGF (ENSSTOG00000005518) #17	VANGL1 (ENSSTOG00000015734) #18	CASQ2 (ENSSTOG00000015738) #19	NHLH2 (ENSSTOG00000019698) #20	SLC22A15 (ENSSTOG00000016141) #21	MAB21L3 (ENSSTOG00000026516) #22	ATP1A1 (ENSSTOG00000016127) #24	IGSF3 (ENSSTOG00000022906) #26	CD2 (ENSSTOG00000004188) #27	PTGFRN (ENSSTOG00000010916) #28	CD101 (ENSSTOG00000010919) #29	TTF2 (ENSSTOG00000010927)	ENSSTOG00000034928	TRIM45 (ENSSTOG00000007369) #31	VTCN1 (ENSSTOG00000007389) #32	MAN1A2 (ENSSTOG00000016016) #33	TENT5C (ENSSTOG00000010392) #34	GDAP2 (ENSSTOG00000024699) #36	WDR3 (ENSSTOG00000003504) #37	SPAG17 (ENSSTOG00000003532)	TBX15 (ENSSTOG00000013040)
Alpin marmot	MODERN SPECIES	79	AMPD1 (ENSMMMG00000014396) #9	NRAS (ENSMMMG00000014434) #10	CSDE1 (ENSMMMG00000014448) #11	SIKE1 (ENSMMMG00000014866) #12	ENSMMMG00000014870	ENSMMMG00000014879 #13	SYCP1 (ENSMMMG00000014892) #14	ENSMMMG00000014952	TSHB (ENSMMMG00000014957) #15	TSPAN2 (ENSMMMG00000014968) #16	NGF (ENSMMMG00000014973) #17	VANGL1 (ENSMMMG00000014977) #18	CASQ2 (ENSMMMG00000014991) #19	NHLH2 (ENSMMMG00000015011) #20	SLC22A15 (ENSMMMG00000015020) #21	MAB21L3 (ENSMMMG00000015051) #22	ATP1A1 (ENSMMMG00000015066) #24	IGSF3 (ENSMMMG00000015107) #26	CD2 (ENSMMMG00000015127) #27	PTGFRN (ENSMMMG00000015141) #28	CD101 (ENSMMMG00000015154) #29	TTF2 (ENSMMMG00000015196)	ENSMMMG00000015205	TRIM45 (ENSMMMG00000015213) #31	VTCN1 (ENSMMMG00000015255) #32	MAN1A2 (ENSMMMG00000015283) #33	TENT5C (ENSMMMG00000015304) #34	GDAP2 (ENSMMMG00000015308) #36	WDR3 (ENSMMMG00000015336) #37	ENSMMMG00000015354	TBX15 (ENSMMMG00000015373)
Eurasian red squirrel	MODERN SPECIES		DENND2C (ENSSVLG00005000379) #8	AMPD1 (ENSSVLG00005000465) #9	ENSSVLG00005000492 #10	CSDE1 (ENSSVLG00005000559) #11	SIKE1 (ENSSVLG00005000707) #12	ENSSVLG00005000743 #13	SYCP1 (ENSSVLG00005000819) #14	TSHB (ENSSVLG00005000935) #15	TSPAN2 (ENSSVLG00005000967) #16	NGF (ENSSVLG00005001008) #17	ENSSVLG00005001021	VANGL1 (ENSSVLG00005001032) #18	CASQ2 (ENSSVLG00005001056) #19	NHLH2 (ENSSVLG00005001085) #20	SLC22A15 (ENSSVLG00005001098) #21	MAB21L3 (ENSSVLG00005001135) #22	ATP1A1 (ENSSVLG00005001182) #24	ENSSVLG00005001215	IGSF3 (ENSSVLG00005001236) #26	CD2 (ENSSVLG00005001265) #27	PTGFRN (ENSSVLG00005001283) #28	CD101 (ENSSVLG00005001302) #29	ENSSVLG00005001327	ENSSVLG00005001350	TRIM45 (ENSSVLG00005001388) #31	VTCN1 (ENSSVLG00005001433) #32	MAN1A2 (ENSSVLG00005001469) #33	TENT5C (ENSSVLG00005001495) #34	GDAP2 (ENSSVLG00005001518) #36	ENSSVLG00005001561	WDR3 (ENSSVLG00005001572) #37
Hystricomorpha	ANCESTRAL SPECIES	23	ENSGT00390000014494 #7	ENSGT00950000182931.B.a.b #8	ENSGT00950000183011.c.a.a #9	ENSGT00940000158947 #10	ENSGT00390000016950 #11	ENSGT00390000018003.a #12	ENSGT00940000163318 #13	ENSGT00390000003368.d #14	ENSGT00940000158152 #15	ENSGT00940000157504 #16	ENSGT00390000007725.A.b #17	ENSGT00390000012496.a #18	ENSGT00390000019377.b #19	ENSGT00940000162602 #20	ENSGT00940000160364 #21	ENSGT01050000244827.B #22	ENSGT00940000154840.b #24	ENSGT00940000155177.b #26	ENSGT01030000234540.E #27	ENSGT00940000158367 #28	ENSGT00940000161722 #29	ENSGT00940000162718	ENSGT00940000154334.k #31	ENSGT00940000157300 #32	ENSGT00940000157498 #33	ENSGT00940000158856 #34	ENSGT00940000156336 #36	ENSGT00940000153859.a #37	ENSGT00390000013693	ENSGT00940000159013	ENSGT00940000153724.A.i
Naked mole-rat female	MODERN SPECIES	10	ENSHGLG00000009388 #10	CSDE1 (ENSHGLG00000009620) #11	SIKE1 (ENSHGLG00000015408) #12	ENSHGLG00000032648	ENSHGLG00000004974 #13	ENSHGLG00000047308	ENSHGLG00000006103 #14	TSHB (ENSHGLG00000014600) #15	TSPAN2 (ENSHGLG00000010786) #16	NGF (ENSHGLG00000044577) #17	ENSHGLG00000032979	VANGL1 (ENSHGLG00000016399) #18	CASQ2 (ENSHGLG00000038257) #19	NHLH2 (ENSHGLG00000046588) #20	SLC22A15 (ENSHGLG00000011061) #21	MAB21L3 (ENSHGLG00000009205) #22	ATP1A1 (ENSHGLG00000009304) #24	IGSF3 (ENSHGLG00000018539) #26	CD2 (ENSHGLG00000014947) #27	PTGFRN (ENSHGLG00000019106) #28	CD101 (ENSHGLG00000018298) #29	TTF2 (ENSHGLG00000012459)	TRIM45 (ENSHGLG00000017735) #31	VTCN1 (ENSHGLG00000018792) #32	ENSHGLG00000045985	MAN1A2 (ENSHGLG00000017646) #33	FAM46C (ENSHGLG00000043157) #34	ENSHGLG00000041120	ENSHGLG00000017537 #36	WDR3 (ENSHGLG00000017936) #37	SPAG17 (ENSHGLG00000009162)
Hystricomorpha_a	ANCESTRAL SPECIES	14	ENSGT00390000014494 #7	ENSGT00950000182931.B.a.b #8	ENSGT00950000183011.c.a.a #9	ENSGT00940000158947 #10	ENSGT00390000016950 #11	ENSGT00390000018003.a #12	ENSGT00940000163318 #13	ENSGT00390000003368.d #14	ENSGT00940000158152 #15	ENSGT00940000157504 #16	ENSGT00390000007725.A.b #17	ENSGT00390000012496.a #18	ENSGT00390000019377.b #19	ENSGT00940000162602 #20	ENSGT00940000160364 #21	ENSGT01050000244827.B #22	ENSGT00940000154840.b #24	ENSGT00940000155177.b #26	ENSGT01030000234540.E #27	ENSGT00940000158367 #28	ENSGT00940000161722 #29	ENSGT00940000164746	ENSGT00940000167338	ENSGT00940000154334.k #31	ENSGT00940000157300 #32	ENSGT00940000157498 #33	ENSGT00940000158856 #34	ENSGT00940000156336 #36	ENSGT00940000153859.a #37	ENSGT00390000013693	ENSGT00940000159013
Guinea pig	MODERN SPECIES	2	BCAS2 (ENSCPOG00000020532) #7	DENND2C (ENSCPOG00000012944) #8	AMPD1 (ENSCPOG00000002591) #9	NRAS (ENSCPOG00000021833) #10	CSDE1 (ENSCPOG00000040388) #11	SIKE1 (ENSCPOG00000007406) #12	ENSCPOG00000009115	SYCP1 (ENSCPOG00000012690) #14	TSHB (ENSCPOG00000030694) #15	TSPAN2 (ENSCPOG00000008376) #16	NGF (ENSCPOG00000024033) #17	VANGL1 (ENSCPOG00000001701) #18	CASQ2 (ENSCPOG00000001703) #19	NHLH2 (ENSCPOG00000026593) #20	SLC22A15 (ENSCPOG00000009506) #21	MAB21L3 (ENSCPOG00000009511) #22	ATP1A1 (ENSCPOG00000000927) #24	IGSF3 (ENSCPOG00000002029) #26	CD2 (ENSCPOG00000036418) #27	PTGFRN (ENSCPOG00000015740) #28	CD101 (ENSCPOG00000015741) #29	ENSCPOG00000000605	VTCN1 (ENSCPOG00000034001) #32	MAN1A2 (ENSCPOG00000004935) #33	TENT5C (ENSCPOG00000035573) #34	GDAP2 (ENSCPOG00000012599) #36	WDR3 (ENSCPOG00000011305) #37	SPAG17 (ENSCPOG00000011317)	TBX15 (ENSCPOG00000000615)	WARS2 (ENSCPOG00000000616)	ENSCPOG00000001451
Hystricomorpha_b	ANCESTRAL SPECIES	6	ENSGT00390000014494 #7	ENSGT00950000182931.B.a.b #8	ENSGT00950000183011.c.a.a #9	ENSGT00940000158947 #10	ENSGT00390000016950 #11	ENSGT00390000018003.a #12	ENSGT00940000163318 #13	ENSGT00390000003368.d #14	ENSGT00940000158152 #15	ENSGT00940000157504 #16	ENSGT00390000007725.A.b #17	ENSGT00390000012496.a #18	ENSGT00390000019377.b #19	ENSGT00940000162602 #20	ENSGT00940000160364 #21	ENSGT01050000244827.B #22	ENSGT00940000154840.b #24	ENSGT00940000155177.b #26	ENSGT01030000234540.E #27	ENSGT00940000158367 #28	ENSGT00940000161722 #29	ENSGT00940000167338	ENSGT00940000154334.k #31	ENSGT00940000157300 #32	ENSGT00940000157498 #33	ENSGT00940000158856 #34	ENSGT00940000156336 #36	ENSGT00940000153859.a #37	ENSGT00390000013693	ENSGT00940000159013	ENSGT00940000153724.A.i
Long-tailed chinchilla	MODERN SPECIES	142	DENND2C (ENSCLAG00000006608) #8	AMPD1 (ENSCLAG00000006645) #9	NRAS (ENSCLAG00000005888) #10	CSDE1 (ENSCLAG00000006618) #11	SIKE1 (ENSCLAG00000005344) #12	ENSCLAG00000006997	ENSCLAG00000013132 #13	ENSCLAG00000004900 ##14	TSHB (ENSCLAG00000011105) #15	TSPAN2 (ENSCLAG00000007865) #16	NGF (ENSCLAG00000004815) #17	VANGL1 (ENSCLAG00000006270) #18	CASQ2 (ENSCLAG00000007972) #19	NHLH2 (ENSCLAG00000005691) #20	SLC22A15 (ENSCLAG00000006619) #21	MAB21L3 (ENSCLAG00000004428) #22	ATP1A1 (ENSCLAG00000005733) #24	IGSF3 (ENSCLAG00000006923) #26	CD2 (ENSCLAG00000007838) #27	PTGFRN (ENSCLAG00000008229) #28	CD101 (ENSCLAG00000010019) #29	ENSCLAG00000014230	TRIM45 (ENSCLAG00000010898) #31	VTCN1 (ENSCLAG00000014982) #32	MAN1A2 (ENSCLAG00000008573) #33	TENT5C (ENSCLAG00000006985) #34	ENSCLAG00000007247	GDAP2 (ENSCLAG00000008843) #36	WDR3 (ENSCLAG00000010657) #37	SPAG17 (ENSCLAG00000006388)	TBX15 (ENSCLAG00000008292)
Degu	MODERN SPECIES	181	NRAS (ENSODEG00000007937) #10	ENSODEG00000007383 #11	SIKE1 (ENSODEG00000007343) #12	ENSODEG00000010107 #13	SYCP1 (ENSODEG00000006927) #14	TSHB (ENSODEG00000009005) #15	TSPAN2 (ENSODEG00000007319) #16	NGF (ENSODEG00000006538) #17	ENSODEG00000006379	ENSODEG00000008957	ENSODEG00000008559	VANGL1 (ENSODEG00000010599) #18	CASQ2 (ENSODEG00000009014) #19	NHLH2 (ENSODEG00000008157) #20	SLC22A15 (ENSODEG00000007565) #21	MAB21L3 (ENSODEG00000005924) #22	ATP1A1 (ENSODEG00000006810) #24	ENSODEG00000006132	IGSF3 (ENSODEG00000007439) #26	ENSODEG00000006855	PTGFRN (ENSODEG00000006807) #28	CD101 (ENSODEG00000006286) #29	ENSODEG00000006362	TRIM45 (ENSODEG00000007020) #31	VTCN1 (ENSODEG00000006757) #32	MAN1A2 (ENSODEG00000005674) #33	TENT5C (ENSODEG00000006187) #34	ENSODEG00000005813