Hystricomorpha_a	ANCESTRAL SPECIES	14	ENSGT00390000014494 #7	ENSGT00950000182931.B.a.b #8	ENSGT00950000183011.c.a.a #9	ENSGT00940000158947 #10	ENSGT00390000016950 #11	ENSGT00390000018003.a #12	ENSGT00940000163318	ENSGT00390000003368.d #14	ENSGT00940000158152 #15	ENSGT00940000157504 #16	ENSGT00390000007725.A.b #17	ENSGT00390000012496.a #18	ENSGT00390000019377.b #19	ENSGT00940000162602 #20	ENSGT00940000160364 #21	ENSGT01050000244827.B #22	ENSGT00940000154840.b #23	ENSGT00940000155177.b #24	ENSGT01030000234540.E #25	ENSGT00940000158367 #26	ENSGT00940000161722 #27	ENSGT00940000164746 #28	ENSGT00940000167338	ENSGT00940000154334.k	ENSGT00940000157300 #29	ENSGT00940000157498 #30	ENSGT00940000158856 #31	ENSGT00940000156336 #32	ENSGT00940000153859.a #33	ENSGT00390000013693 #34	ENSGT00940000159013 #35
Guinea pig	MODERN SPECIES	2	BCAS2 (ENSCPOG00000020532) #7	DENND2C (ENSCPOG00000012944) #8	AMPD1 (ENSCPOG00000002591) #9	NRAS (ENSCPOG00000021833) #10	CSDE1 (ENSCPOG00000040388) #11	SIKE1 (ENSCPOG00000007406) #12	ENSCPOG00000009115 #13	SYCP1 (ENSCPOG00000012690) #14	TSHB (ENSCPOG00000030694) #15	TSPAN2 (ENSCPOG00000008376) #16	NGF (ENSCPOG00000024033) #17	VANGL1 (ENSCPOG00000001701) #18	CASQ2 (ENSCPOG00000001703) #19	NHLH2 (ENSCPOG00000026593) #20	SLC22A15 (ENSCPOG00000009506) #21	MAB21L3 (ENSCPOG00000009511) #22	ATP1A1 (ENSCPOG00000000927) #23	IGSF3 (ENSCPOG00000002029) #24	CD2 (ENSCPOG00000036418) #25	PTGFRN (ENSCPOG00000015740) #26	CD101 (ENSCPOG00000015741) #27	ENSCPOG00000000605 #28	VTCN1 (ENSCPOG00000034001) #29	MAN1A2 (ENSCPOG00000004935) #30	TENT5C (ENSCPOG00000035573) #31	GDAP2 (ENSCPOG00000012599) #32	WDR3 (ENSCPOG00000011305) #33	SPAG17 (ENSCPOG00000011317) #34	TBX15 (ENSCPOG00000000615) #35	WARS2 (ENSCPOG00000000616) #36	ENSCPOG00000001451 #37
Hystricomorpha_b	ANCESTRAL SPECIES	6	ENSGT00390000014494 #7	ENSGT00950000182931.B.a.b #8	ENSGT00950000183011.c.a.a #9	ENSGT00940000158947 #10	ENSGT00390000016950 #11	ENSGT00390000018003.a #12	ENSGT00940000163318	ENSGT00390000003368.d #14	ENSGT00940000158152 #15	ENSGT00940000157504 #16	ENSGT00390000007725.A.b #17	ENSGT00390000012496.a #18	ENSGT00390000019377.b #19	ENSGT00940000162602 #20	ENSGT00940000160364 #21	ENSGT01050000244827.B #22	ENSGT00940000154840.b #23	ENSGT00940000155177.b #24	ENSGT01030000234540.E #25	ENSGT00940000158367 #26	ENSGT00940000161722 #27	ENSGT00940000167338	ENSGT00940000154334.k	ENSGT00940000157300 #29	ENSGT00940000157498 #30	ENSGT00940000158856 #31	ENSGT00940000156336 #32	ENSGT00940000153859.a #33	ENSGT00390000013693 #34	ENSGT00940000159013 #35	ENSGT00940000153724.A.i #36
Long-tailed chinchilla	MODERN SPECIES	142	DENND2C (ENSCLAG00000006608) #8	AMPD1 (ENSCLAG00000006645) #9	NRAS (ENSCLAG00000005888) #10	CSDE1 (ENSCLAG00000006618) #11	SIKE1 (ENSCLAG00000005344) #12	ENSCLAG00000006997	ENSCLAG00000013132	ENSCLAG00000004900 ##14	TSHB (ENSCLAG00000011105) #15	TSPAN2 (ENSCLAG00000007865) #16	NGF (ENSCLAG00000004815) #17	VANGL1 (ENSCLAG00000006270) #18	CASQ2 (ENSCLAG00000007972) #19	NHLH2 (ENSCLAG00000005691) #20	SLC22A15 (ENSCLAG00000006619) #21	MAB21L3 (ENSCLAG00000004428) #22	ATP1A1 (ENSCLAG00000005733) #23	IGSF3 (ENSCLAG00000006923) #24	CD2 (ENSCLAG00000007838) #25	PTGFRN (ENSCLAG00000008229) #26	CD101 (ENSCLAG00000010019) #27	ENSCLAG00000014230	TRIM45 (ENSCLAG00000010898)	VTCN1 (ENSCLAG00000014982) #29	MAN1A2 (ENSCLAG00000008573) #30	TENT5C (ENSCLAG00000006985) #31	ENSCLAG00000007247	GDAP2 (ENSCLAG00000008843) #32	WDR3 (ENSCLAG00000010657) #33	SPAG17 (ENSCLAG00000006388) #34	TBX15 (ENSCLAG00000008292) #35
Degu	MODERN SPECIES	181	NRAS (ENSODEG00000007937) #10	ENSODEG00000007383 #11	SIKE1 (ENSODEG00000007343) #12	ENSODEG00000010107	SYCP1 (ENSODEG00000006927) #14	TSHB (ENSODEG00000009005) #15	TSPAN2 (ENSODEG00000007319) #16	NGF (ENSODEG00000006538) #17	ENSODEG00000006379	ENSODEG00000008957	ENSODEG00000008559	VANGL1 (ENSODEG00000010599) #18	CASQ2 (ENSODEG00000009014) #19	NHLH2 (ENSODEG00000008157) #20	SLC22A15 (ENSODEG00000007565) #21	MAB21L3 (ENSODEG00000005924) #22	ATP1A1 (ENSODEG00000006810) #23	ENSODEG00000006132	IGSF3 (ENSODEG00000007439) #24	ENSODEG00000006855	PTGFRN (ENSODEG00000006807) #26	CD101 (ENSODEG00000006286) #27	ENSODEG00000006362	TRIM45 (ENSODEG00000007020)	VTCN1 (ENSODEG00000006757) #29	MAN1A2 (ENSODEG00000005674) #30	TENT5C (ENSODEG00000006187) #31	ENSODEG00000005813