Boreoeutheria ANCESTRAL SPECIES 95 ENSGT01030000235420 #21 ENSGT01050000244868.a.a.a.b.a.b.a.a.b #23 Euarchontoglires ANCESTRAL SPECIES 79 ENSGT01030000235420 #21 ENSGT01050000244868.a.a.a.b.a.b.a.a.b #23 Euarchontoglires_A ANCESTRAL SPECIES 79 ENSGT01030000235420 #21 ENSGT01050000244868.a.a.a.b.a.b.a.a.b #23 Glires ANCESTRAL SPECIES 83 ENSGT01030000235420 #21 ENSGT01050000244868.a.a.a.b.a.b.a.a.b #23 Rodentia ANCESTRAL SPECIES 81 ENSGT01030000235420 #21 ENSGT01050000244868.a.a.a.b.a.b.a.a.b #23 Rodentia_B ANCESTRAL SPECIES 119 ENSGT01050000244868.a.a.a.b.a.b.a.a.b #23 ENSGT00940000159832 #20 Myomorpha ANCESTRAL SPECIES 135 ENSGT01050000244868.a.a.a.b.a.b.a.a.b #23 ENSGT00940000159832 #20 Muroidea ANCESTRAL SPECIES 158 ENSGT01050000244868.a.a.a.b.a.b.a.a.b #23 ENSGT00940000159832 #20 Muroidea_A DUPLICATION Muroidea_A DUPLICATION Muroidea_A ANCESTRAL SPECIES 46 ENSGT00940000159832 #20 ENSGT01050000244868.a.a.a.b.a.b.a.a.b.d ##23 ENSGT01050000244868.a.a.a.b.a.b.a.a.b.c.a #23 ENSGT00940000161153 #26 ENSGT00940000162022 #27 Murinae ANCESTRAL SPECIES 107 ENSGT01050000244868.a.a.a.b.a.b.a.a.b.d ##23 ENSGT01050000244868.a.a.a.b.a.b.a.a.b.c.a #23 Rat DUPLICATION Rat MODERN SPECIES 46 Magea10-ps4 (ENSRNOG00000066349) #7 ENSRNOG00000068897 #8 Magea10-ps5 (ENSRNOG00000064790) #9 LOC100362173 (ENSRNOG00000029158) #10 LOC680190 (ENSRNOG00000065503) #11 AABR07038250.1 (ENSRNOG00000003860) #12 ENSRNOG00000064007 #13 Cldn34d (ENSRNOG00000043402) #14 LOC317456 (ENSRNOG00000003883) #15 AABR07038269.1 (ENSRNOG00000050081) #16 Tbl1x (ENSRNOG00000003686) #17 Cldn34e (ENSRNOG00000026351) #18 Bnip3-ps3 (ENSRNOG00000065427) #19 Prkx (ENSRNOG00000060168) #20 Pbsn (ENSRNOG00000003713) #21 Obp1f (ENSRNOG00000063224) #22 Obp1f (ENSRNOG00000062551) #23 Magea4 (ENSRNOG00000062420) #24 Ptges3l1 (ENSRNOG00000060486) #25 Sts (ENSRNOG00000032487) #26 Pnpla4 (ENSRNOG00000026157) #27 RGD1563378 (ENSRNOG00000067596) #28 Prrg1 (ENSRNOG00000026044) #29 ENSRNOG00000064865 #30 Fam47a (ENSRNOG00000003836) #31 Cfap47 (ENSRNOG00000030048) #32 Mageb16 (ENSRNOG00000029408) #33 Da2-19 (ENSRNOG00000032739) #34 Tmem47 (ENSRNOG00000030418) #35 Srsf8 (ENSRNOG00000048925) #36 AABR07038464.1 (ENSRNOG00000061492) #37 Rat MODERN SPECIES 46 AABR07038477.1 (ENSRNOG00000038369) AABR07038464.1 (ENSRNOG00000061492) #37 Srsf8 (ENSRNOG00000048925) #36 Tmem47 (ENSRNOG00000030418) #35 Da2-19 (ENSRNOG00000032739) #34 Mageb16 (ENSRNOG00000029408) #33 Cfap47 (ENSRNOG00000030048) #32 Fam47a (ENSRNOG00000003836) #31 ENSRNOG00000064865 #30 Prrg1 (ENSRNOG00000026044) #29 RGD1563378 (ENSRNOG00000067596) #28 Pnpla4 (ENSRNOG00000026157) #27 Sts (ENSRNOG00000032487) #26 Ptges3l1 (ENSRNOG00000060486) #25 Magea4 (ENSRNOG00000062420) #24 Obp1f (ENSRNOG00000062551) #23 Obp1f (ENSRNOG00000063224) #22 Pbsn (ENSRNOG00000003713) #21 Prkx (ENSRNOG00000060168) #20 Bnip3-ps3 (ENSRNOG00000065427) #19 Cldn34e (ENSRNOG00000026351) #18 Tbl1x (ENSRNOG00000003686) #17 AABR07038269.1 (ENSRNOG00000050081) #16 LOC317456 (ENSRNOG00000003883) #15 Cldn34d (ENSRNOG00000043402) #14 ENSRNOG00000064007 #13 AABR07038250.1 (ENSRNOG00000003860) #12 LOC680190 (ENSRNOG00000065503) #11 LOC100362173 (ENSRNOG00000029158) #10 Magea10-ps5 (ENSRNOG00000064790) #9 ENSRNOG00000068897 #8 Mus ANCESTRAL SPECIES 90 ENSGT01050000244868.a.a.a.b.a.b.a.a.b.d ##23 ENSGT01050000244868.a.a.a.b.a.b.a.a.b.c.a #23 Mus_A ANCESTRAL SPECIES 79 ENSGT01050000244868.a.a.a.b.a.b.a.a.b.d ##23 ENSGT01050000244868.a.a.a.b.a.b.a.a.b.c.a #23 Mus_B ANCESTRAL SPECIES 93 ENSGT01050000244868.a.a.a.b.a.b.a.a.b.d ##23 ENSGT01050000244868.a.a.a.b.a.b.a.a.b.c.a #23 Mus_C ANCESTRAL SPECIES 80 ENSGT01050000244868.a.a.a.b.a.b.a.a.b.d ##23 ENSGT01050000244868.a.a.a.b.a.b.a.a.b.c.a #23 Steppe mouse DUPLICATION Steppe mouse MODERN SPECIES 1669 Pbsn (ENSMSIG00000014814) ##23 ENSMSIG00000014866 #23 Steppe mouse MODERN SPECIES 1014 ENSMSIG00000000517 #23 Mouse DUPLICATION Mouse MODERN SPECIES 37 Smim9 (ENSMUSG00000073094) F8 (ENSMUSG00000031196) Fundc2 (ENSMUSG00000031198) Cmc4 (ENSMUSG00000090110) Mtcp1 (ENSMUSG00000031200) Brcc3 (ENSMUSG00000031201) Vbp1 (ENSMUSG00000031197) Rab39b (ENSMUSG00000031202) Pls3 (ENSMUSG00000016382) Cldn34b3 (ENSMUSG00000071738) #11 Cldn34b4 (ENSMUSG00000073085) #10 Cldn34d (ENSMUSG00000079525) #14 Tbl1x (ENSMUSG00000025246) #17 Prkx (ENSMUSG00000035725) #20 Pbsn (ENSMUSG00000000003) ##23 Gm14744 (ENSMUSG00000079522) #23 5430402E10Rik (ENSMUSG00000044121) #23 Obp1a (ENSMUSG00000067684) ##23 Gm5938 (ENSMUSG00000079521) ##23 Obp1b (ENSMUSG00000067679) ##23 Gm14743 (ENSMUSG00000079519) ##23 4930480E11Rik (ENSMUSG00000035651) ##31 Prrg1 (ENSMUSG00000047996) #29 Fam47c (ENSMUSG00000078315) #31 Cfap47 (ENSMUSG00000073077) #32 Mageb16 (ENSMUSG00000046942) #33 Tmem47 (ENSMUSG00000025666) #35 4930595M18Rik (ENSMUSG00000060673) Dmd (ENSMUSG00000045103) Tsga8 (ENSMUSG00000035522) Fthl17a (ENSMUSG00000035491) ##28 Mouse MODERN SPECIES 37 Tab3 (ENSMUSG00000035476) Fthl17a (ENSMUSG00000035491) ##28 Tsga8 (ENSMUSG00000035522) Dmd (ENSMUSG00000045103) 4930595M18Rik (ENSMUSG00000060673) Tmem47 (ENSMUSG00000025666) #35 Mageb16 (ENSMUSG00000046942) #33 Cfap47 (ENSMUSG00000073077) #32 Fam47c (ENSMUSG00000078315) #31 Prrg1 (ENSMUSG00000047996) #29 4930480E11Rik (ENSMUSG00000035651) ##31 Gm14743 (ENSMUSG00000079519) ##23 Obp1b (ENSMUSG00000067679) ##23 Gm5938 (ENSMUSG00000079521) ##23 Obp1a (ENSMUSG00000067684) ##23 5430402E10Rik (ENSMUSG00000044121) #23 Gm14744 (ENSMUSG00000079522) #23 Pbsn (ENSMUSG00000000003) ##23 Prkx (ENSMUSG00000035725) #20 Tbl1x (ENSMUSG00000025246) #17 Cldn34d (ENSMUSG00000079525) #14 Cldn34b4 (ENSMUSG00000073085) #10 Cldn34b3 (ENSMUSG00000071738) #11 Pls3 (ENSMUSG00000016382) Rab39b (ENSMUSG00000031202) Vbp1 (ENSMUSG00000031197) Brcc3 (ENSMUSG00000031201) Mtcp1 (ENSMUSG00000031200) Cmc4 (ENSMUSG00000090110) Fundc2 (ENSMUSG00000031198) F8 (ENSMUSG00000031196) Ryukyu mouse DUPLICATION Ryukyu mouse MODERN SPECIES 19 Or13ae2 (MGP_CAROLIEiJ_G0033190) Dkc1 (MGP_CAROLIEiJ_G0033191) Mpp1 (MGP_CAROLIEiJ_G0033192) Smim9 (MGP_CAROLIEiJ_G0033193) F8 (MGP_CAROLIEiJ_G0033194) Fundc2 (MGP_CAROLIEiJ_G0033195) Cmc4 (MGP_CAROLIEiJ_G0033196) Mtcp1 (MGP_CAROLIEiJ_G0033197) MGP_CAROLIEiJ_G0033198 Pls3 (MGP_CAROLIEiJ_G0033199) Cldn34b4 (MGP_CAROLIEiJ_G0033200) #10 Cldn34d (MGP_CAROLIEiJ_G0033201) #14 Tbl1x (MGP_CAROLIEiJ_G0033202) #17 Prkx (MGP_CAROLIEiJ_G0033203) #20 Pbsn (MGP_CAROLIEiJ_G0033204) ##23 MGP_CAROLIEiJ_G0033206 #23 MGP_CAROLIEiJ_G0033205 #23 Prrg1 (MGP_CAROLIEiJ_G0033207) #29 Fam47c (MGP_CAROLIEiJ_G0033208) #31 MGP_CAROLIEiJ_G0033209 #32 Mageb16 (MGP_CAROLIEiJ_G0033210) #33 Tmem47 (MGP_CAROLIEiJ_G0033211) #35 MGP_CAROLIEiJ_G0033212 Dmd (MGP_CAROLIEiJ_G0033213) MGP_CAROLIEiJ_G0033214 Fthl17a (MGP_CAROLIEiJ_G0033215) ##28 MGP_CAROLIEiJ_G0033216 Gk (MGP_CAROLIEiJ_G0033217) Tasl (MGP_CAROLIEiJ_G0033218) Samt3 (MGP_CAROLIEiJ_G0033219) Nr0b1 (MGP_CAROLIEiJ_G0033220) Ryukyu mouse MODERN SPECIES 19 Dkc1 (MGP_CAROLIEiJ_G0033191) Mpp1 (MGP_CAROLIEiJ_G0033192) Smim9 (MGP_CAROLIEiJ_G0033193) F8 (MGP_CAROLIEiJ_G0033194) Fundc2 (MGP_CAROLIEiJ_G0033195) Cmc4 (MGP_CAROLIEiJ_G0033196) Mtcp1 (MGP_CAROLIEiJ_G0033197) MGP_CAROLIEiJ_G0033198 Pls3 (MGP_CAROLIEiJ_G0033199) Cldn34b4 (MGP_CAROLIEiJ_G0033200) #10 Cldn34d (MGP_CAROLIEiJ_G0033201) #14 Tbl1x (MGP_CAROLIEiJ_G0033202) #17 Prkx (MGP_CAROLIEiJ_G0033203) #20 Pbsn (MGP_CAROLIEiJ_G0033204) ##23 MGP_CAROLIEiJ_G0033206 #23 MGP_CAROLIEiJ_G0033205 #23 Prrg1 (MGP_CAROLIEiJ_G0033207) #29 Fam47c (MGP_CAROLIEiJ_G0033208) #31 MGP_CAROLIEiJ_G0033209 #32 Mageb16 (MGP_CAROLIEiJ_G0033210) #33 Tmem47 (MGP_CAROLIEiJ_G0033211) #35 MGP_CAROLIEiJ_G0033212 Dmd (MGP_CAROLIEiJ_G0033213) MGP_CAROLIEiJ_G0033214 Fthl17a (MGP_CAROLIEiJ_G0033215) ##28 MGP_CAROLIEiJ_G0033216 Gk (MGP_CAROLIEiJ_G0033217) Tasl (MGP_CAROLIEiJ_G0033218) Samt3 (MGP_CAROLIEiJ_G0033219) Nr0b1 (MGP_CAROLIEiJ_G0033220) MGP_CAROLIEiJ_G0033221 Cricetidae ANCESTRAL SPECIES 8 ENSGT00940000162424 ENSGT00390000017542 ENSGT00510000048066 ENSGT00870000136506.cc.a ENSGT00940000157313 ENSGT00940000157080 ENSGT00940000153430.a.a ENSGT00390000005330 ENSGT00950000183121.b.b.b.b ENSGT00390000005717.e.b.b.b #10 ENSGT00390000005717.e.b.b.a #11 ENSGT00390000005717.e.b.a #14 ENSGT00940000153421.a.a.a.a.b #17 ENSGT00940000159832 #20 ENSGT01050000244868.a.a.a.b.a.b.a.a.b.d ##23 ENSGT01050000244868.a.a.a.b.a.b.a.a.b.c.a #23 ENSGT00940000158538 #29 ENSGT00940000163515.i #31 ENSGT00940000159699 #32 ENSGT00940000162825 #33 ENSGT00940000162492.f ENSGT00530000063484.b.b #35 ENSGT00940000154342.C ENSGT00950000182841.b.a.a.a.j ##28 ENSGT00940000159499 ENSGT01000000214434.B.b.e.a ENSGT00390000011425.B ENSGT00520000056155.g.b.b ENSGT00390000015719.d ENSGT01090000260076.b.b ENSGT00950000182900.D.d.b Cricetidae_B ANCESTRAL SPECIES ENSGT01050000244868.a.a.a.b.a.b.a.a.b.c.a #23 Northern American deer mouse MODERN SPECIES 475 ENSPEMG00000031097 ENSPEMG00000028040 Il1rapl1 (ENSPEMG00000029607) ENSPEMG00000019379 Tmem47 (ENSPEMG00000029078) #35 ENSPEMG00000026179 Mageb16 (ENSPEMG00000023768) #33 ENSPEMG00000028268 Cfap47 (ENSPEMG00000022325) #32 Fam47c (ENSPEMG00000030109) #31 Prrg1 (ENSPEMG00000030282) #29 4930480E11Rik (ENSPEMG00000028721) ##31 ENSPEMG00000030251 ENSPEMG00000023943 ##23 ENSPEMG00000024840 ENSPEMG00000015794 #23 ENSPEMG00000027218 #21 ENSPEMG00000023281 Pbsn (ENSPEMG00000012253) ##23 Prkx (ENSPEMG00000030408) #20 ENSPEMG00000030079 #18 Tbl1x (ENSPEMG00000017480) #17 ENSPEMG00000029386 #14 ENSPEMG00000025248 ENSPEMG00000025316 ENSPEMG00000026374 #11 Cldn34b4 (ENSPEMG00000003717) #10 ENSPEMG00000026202 #11 ENSPEMG00000025993 #14 Sat1 (ENSPEMG00000001319) ENSPEMG00000002650 Cricetinae ANCESTRAL SPECIES 17 ENSGT00390000008256.j.b ENSGT00940000159370 ENSGT00940000156709 ENSGT00940000162424 ENSGT00390000017542 ENSGT00510000048066 ENSGT00870000136506.cc.a ENSGT00940000157313 ENSGT00940000157080 ENSGT00940000153430.a.a ENSGT00390000005330 ENSGT00950000183121.b.b.b.b ENSGT00940000153421.a.a.a.a.b #17 ENSGT00940000159832 #20 ENSGT01050000244868.a.a.a.b.a.b.a.a.b.d ##23 ENSGT01050000244868.a.a.a.b.a.b.a.a.b.c.a #23 ENSGT00940000158538 #29 ENSGT00940000162492.f ENSGT00940000159699 #32 ENSGT00940000162825 #33 ENSGT00530000063484.b.b #35 ENSGT00940000154342.C ENSGT00950000182841.b.a.a.a.j ##28 ENSGT00940000159499 ENSGT01000000214434.B.b.e.a ENSGT00390000011425.B ENSGT00390000015719.d ENSGT01090000260076.b.b ENSGT00950000182900.D.d.b ENSGT00390000018199.b.b.b ENSGT00940000159951.y.a.b Chinese hamster chok1gshd MODERN SPECIES 230 Phex (ENSCGRG00001019759) ENSCGRG00001015986 ENSCGRG00001015828 Ptchd1 (ENSCGRG00001010854) Prdx4 (ENSCGRG00001009299) ENSCGRG00001000350 SAT1 (ENSCGRG00001022103) ENSCGRG00001013998 #11 Cldn34d (ENSCGRG00001014236) #14 ENSCGRG00001013899 ENSCGRG00001017212 ENSCGRG00001013770 Tbl1x (ENSCGRG00001016098) #17 Prkx (ENSCGRG00001011584) #20 Pbsn (ENSCGRG00001011020) ##23 ENSCGRG00001000213 #23 ENSCGRG00001019539 ##23 ENSCGRG00001017585 ##23 ENSCGRG00001000265 ##23 ENSCGRG00001019344 Prrg1 (ENSCGRG00001018689) #29 ENSCGRG00001016254 Fam47c (ENSCGRG00001013363) #31 ENSCGRG00001015309 ENSCGRG00001013088 Cfap47 (ENSCGRG00001011946) #32 Mageb16 (ENSCGRG00001005887) #33 ENSCGRG00001013660 ENSCGRG00001004831 ENSCGRG00001004625 Tmem47 (ENSCGRG00001011279) #35 Muroidea_A ANCESTRAL SPECIES ENSGT01050000244868.a.a.a.b.a.b.a.a.b.c.b ##23 Cricetidae ANCESTRAL SPECIES ENSGT01050000244868.a.a.a.b.a.b.a.a.b.c.b ##23 Cricetinae ANCESTRAL SPECIES ENSGT01050000244868.a.a.a.b.a.b.a.a.b.c.b ##23 Chinese hamster chok1gshd DUPLICATION Chinese hamster chok1gshd DUPLICATION Chinese hamster chok1gshd MODERN SPECIES 230 ENSCGRG00001015828 Ptchd1 (ENSCGRG00001010854) Prdx4 (ENSCGRG00001009299) ENSCGRG00001000350 SAT1 (ENSCGRG00001022103) ENSCGRG00001013998 #11 Cldn34d (ENSCGRG00001014236) #14 ENSCGRG00001013899 ENSCGRG00001017212 ENSCGRG00001013770 Tbl1x (ENSCGRG00001016098) #17 Prkx (ENSCGRG00001011584) #20 Pbsn (ENSCGRG00001011020) ##23 ENSCGRG00001000213 #23 ENSCGRG00001019539 ##23 ENSCGRG00001017585 ##23 ENSCGRG00001000265 ##23 ENSCGRG00001019344 Prrg1 (ENSCGRG00001018689) #29 ENSCGRG00001016254 Fam47c (ENSCGRG00001013363) #31 ENSCGRG00001015309 ENSCGRG00001013088 Cfap47 (ENSCGRG00001011946) #32 Mageb16 (ENSCGRG00001005887) #33 ENSCGRG00001013660 ENSCGRG00001004831 ENSCGRG00001004625 Tmem47 (ENSCGRG00001011279) #35 ENSCGRG00001010338 Chinese hamster chok1gshd MODERN SPECIES 230 Ptchd1 (ENSCGRG00001010854) Prdx4 (ENSCGRG00001009299) ENSCGRG00001000350 SAT1 (ENSCGRG00001022103) ENSCGRG00001013998 #11 Cldn34d (ENSCGRG00001014236) #14 ENSCGRG00001013899 ENSCGRG00001017212 ENSCGRG00001013770 Tbl1x (ENSCGRG00001016098) #17 Prkx (ENSCGRG00001011584) #20 Pbsn (ENSCGRG00001011020) ##23 ENSCGRG00001000213 #23 ENSCGRG00001019539 ##23 ENSCGRG00001017585 ##23 ENSCGRG00001000265 ##23 ENSCGRG00001019344 Prrg1 (ENSCGRG00001018689) #29 ENSCGRG00001016254 Fam47c (ENSCGRG00001013363) #31 ENSCGRG00001015309 ENSCGRG00001013088 Cfap47 (ENSCGRG00001011946) #32 Mageb16 (ENSCGRG00001005887) #33 ENSCGRG00001013660 ENSCGRG00001004831 ENSCGRG00001004625 Tmem47 (ENSCGRG00001011279) #35 ENSCGRG00001010338 Chinese hamster chok1gshd MODERN SPECIES 230 ENSCGRG00001010338 Tmem47 (ENSCGRG00001011279) #35 ENSCGRG00001004625 ENSCGRG00001004831 ENSCGRG00001013660 Mageb16 (ENSCGRG00001005887) #33 Cfap47 (ENSCGRG00001011946) #32 ENSCGRG00001013088 ENSCGRG00001015309 Fam47c (ENSCGRG00001013363) #31 ENSCGRG00001016254 Prrg1 (ENSCGRG00001018689) #29 ENSCGRG00001019344 ENSCGRG00001000265 ##23 ENSCGRG00001017585 ##23 ENSCGRG00001019539 ##23 ENSCGRG00001000213 #23 Pbsn (ENSCGRG00001011020) ##23 Prkx (ENSCGRG00001011584) #20 Tbl1x (ENSCGRG00001016098) #17 ENSCGRG00001013770 ENSCGRG00001017212 ENSCGRG00001013899 Cldn34d (ENSCGRG00001014236) #14 ENSCGRG00001013998 #11 SAT1 (ENSCGRG00001022103) ENSCGRG00001000350 Prdx4 (ENSCGRG00001009299) Ptchd1 (ENSCGRG00001010854) ENSCGRG00001015828 ENSCGRG00001015986 Cricetidae_B ANCESTRAL SPECIES 36 ENSGT00940000162424 ENSGT00390000017542 ENSGT00510000048066 ENSGT00870000136506.cc.a ENSGT00940000157313 ENSGT00940000157080 ENSGT00940000153430.a.a ENSGT00390000005330 ENSGT00950000183121.b.b.b.b ENSGT00390000005717.e.b.b.b #10 ENSGT00390000005717.e.b.b.a #11 ENSGT00390000005717.e.b.a #14 ENSGT00940000153421.a.a.a.a.b #17 ENSGT00940000159832 #20 ENSGT01050000244868.a.a.a.b.a.b.a.a.b.d ##23 ENSGT01050000244868.a.a.a.b.a.b.a.a.b.c.b ##23 ENSGT00940000158538 #29 ENSGT00940000163515.i #31 ENSGT00940000159699 #32 ENSGT00940000162825 #33 ENSGT00940000162492.f ENSGT00530000063484.b.b #35 ENSGT01090000260076.b.b ENSGT00940000155485.f.b ENSGT00940000155485.f.a.a ENSGT00940000164194 ENSGT00940000155485.e ENSGT00390000015719.d ENSGT00520000056155.g.b.b ENSGT00390000011425.B ENSGT01000000214434.B.b.e.a Prairie vole DUPLICATION Prairie vole DUPLICATION Prairie vole MODERN SPECIES 230 ENSMOCG00000016074 ##23 ENSMOCG00000015457 ##23 Prairie vole MODERN SPECIES 225 ENSMOCG00000008892 ##23 Prairie vole DUPLICATION Prairie vole MODERN SPECIES 360 Pcdh19 (ENSMOCG00000013710) ENSMOCG00000016427 Diaph2 (ENSMOCG00000004544) ENSMOCG00000008368 ENSMOCG00000018722 ##12 Prrg1 (ENSMOCG00000015594) #29 ENSMOCG00000019110 Cfap47 (ENSMOCG00000020168) #32 ENSMOCG00000018300 Mageb16 (ENSMOCG00000002574) #33 ENSMOCG00000019029 ENSMOCG00000013562 Tbl1x (ENSMOCG00000002063) #17 Prkx (ENSMOCG00000003139) #20 Pbsn (ENSMOCG00000005173) ##23 ENSMOCG00000019602 ##23 Msn (ENSMOCG00000010407) Vsig4 (ENSMOCG00000000197) Hsf3 (ENSMOCG00000003224) Heph (ENSMOCG00000017685) Gpr165 (ENSMOCG00000003694) Pgr15l (ENSMOCG00000004906) Eda2r (ENSMOCG00000020804) ENSMOCG00000017157 ENSMOCG00000001177 ENSMOCG00000018755 Ophn1 (ENSMOCG00000011502) Yipf6 (ENSMOCG00000004509) ENSMOCG00000000213 Stard8 (ENSMOCG00000000274) Efnb1 (ENSMOCG00000019155) Prairie vole MODERN SPECIES 230 ENSMOCG00000015457 ##23 ENSMOCG00000016074 ##23 Northern American deer mouse MODERN SPECIES 475 ENSPEMG00000025328 ENSPEMG00000028142 ENSPEMG00000031097 ENSPEMG00000028040 Il1rapl1 (ENSPEMG00000029607) ENSPEMG00000019379 Tmem47 (ENSPEMG00000029078) #35 ENSPEMG00000026179 Mageb16 (ENSPEMG00000023768) #33 ENSPEMG00000028268 Cfap47 (ENSPEMG00000022325) #32 Fam47c (ENSPEMG00000030109) #31 Prrg1 (ENSPEMG00000030282) #29 4930480E11Rik (ENSPEMG00000028721) ##31 ENSPEMG00000030251 ENSPEMG00000023943 ##23 ENSPEMG00000024840 ENSPEMG00000015794 #23 ENSPEMG00000027218 #21 ENSPEMG00000023281 Pbsn (ENSPEMG00000012253) ##23 Prkx (ENSPEMG00000030408) #20 ENSPEMG00000030079 #18 Tbl1x (ENSPEMG00000017480) #17 ENSPEMG00000029386 #14 ENSPEMG00000025248 ENSPEMG00000025316 ENSPEMG00000026374 #11 Cldn34b4 (ENSPEMG00000003717) #10 ENSPEMG00000026202 #11 ENSPEMG00000025993 #14 Murinae ANCESTRAL SPECIES 14 ENSGT00940000153421.a.a.a.a.b #17 ENSGT00940000159832 #20 ENSGT01050000244868.a.a.a.b.a.b.a.a.b.c.b ##23 ENSGT00950000182841.b.a.a.a.i.a.b #28 ENSGT00940000158538 #29 ENSGT00940000163515.i #31 ENSGT00940000159699 #32 ENSGT00940000162825 #33 ENSGT00530000063484.b.b #35 ENSGT00720000109445 ENSGT00940000154342.C ENSGT00950000182841.b.a.a.a.j ##28 ENSGT00940000159499 ENSGT01000000214434.B.b.e.a ENSGT00390000011425.B ENSGT00520000056155.g.b.b ENSGT00390000015719.d ENSGT00940000155485.e Mus DUPLICATION Mus ANCESTRAL SPECIES ENSGT01050000244868.a.a.a.b.a.b.a.a.b.c.b.e ##23 Mus_A ANCESTRAL SPECIES ENSGT01050000244868.a.a.a.b.a.b.a.a.b.c.b.e ##23 Mus_B ANCESTRAL SPECIES 14 ENSGT00390000015719.d ENSGT00520000056155.g.b.b ENSGT00390000011425.B ENSGT01000000214434.B.b.e.a ENSGT00940000159499 ENSGT00950000182841.b.a.a.a.j ##28 ENSGT00940000154342.C ENSGT00720000109445 ENSGT00940000158553.b.a ENSGT00530000063484.b.b #35 ENSGT00940000162825 #33 ENSGT00940000159699 #32 ENSGT00940000163515.i #31 ENSGT00940000158538 #29 ENSGT00940000163515.j ##31 ENSGT01050000244868.a.a.a.b.a.b.a.a.b.c.b.e ##23 ENSGT01050000244868.a.a.a.b.a.b.a.a.b.c.b.f.b ##23 ENSGT00940000159832 #20 ENSGT00940000153421.a.a.a.a.b #17 ENSGT00390000005717.e.b.a #14 ENSGT00390000005717.e.b.b.b #10 ENSGT00390000005717.e.b.b.a.e.a #11 ENSGT00950000183097.a.a.a ENSGT00940000158132 ENSGT00390000018904 ENSGT00390000000360.r.b.a.a ENSGT00390000006885.a ENSGT00390000012647.d ENSGT00940000154783.f ENSGT00940000160294 ENSGT00390000005685 Mouse DUPLICATION Mouse MODERN SPECIES 37 Nr0b1 (ENSMUSG00000025056) Samt3 (ENSMUSG00000035454) Tasl (ENSMUSG00000025058) Gk (ENSMUSG00000025059) Tab3 (ENSMUSG00000035476) Fthl17a (ENSMUSG00000035491) ##28 Tsga8 (ENSMUSG00000035522) Dmd (ENSMUSG00000045103) 4930595M18Rik (ENSMUSG00000060673) Tmem47 (ENSMUSG00000025666) #35 Mageb16 (ENSMUSG00000046942) #33 Cfap47 (ENSMUSG00000073077) #32 Fam47c (ENSMUSG00000078315) #31 Prrg1 (ENSMUSG00000047996) #29 4930480E11Rik (ENSMUSG00000035651) ##31 Gm14743 (ENSMUSG00000079519) ##23 Obp1b (ENSMUSG00000067679) ##23 Gm5938 (ENSMUSG00000079521) ##23 Obp1a (ENSMUSG00000067684) ##23 5430402E10Rik (ENSMUSG00000044121) #23 Gm14744 (ENSMUSG00000079522) #23 Pbsn (ENSMUSG00000000003) ##23 Prkx (ENSMUSG00000035725) #20 Tbl1x (ENSMUSG00000025246) #17 Cldn34d (ENSMUSG00000079525) #14 Cldn34b4 (ENSMUSG00000073085) #10 Cldn34b3 (ENSMUSG00000071738) #11 Pls3 (ENSMUSG00000016382) Rab39b (ENSMUSG00000031202) Vbp1 (ENSMUSG00000031197) Brcc3 (ENSMUSG00000031201) Mouse MODERN SPECIES 37 Mtcp1 (ENSMUSG00000031200) Brcc3 (ENSMUSG00000031201) Vbp1 (ENSMUSG00000031197) Rab39b (ENSMUSG00000031202) Pls3 (ENSMUSG00000016382) Cldn34b3 (ENSMUSG00000071738) #11 Cldn34b4 (ENSMUSG00000073085) #10 Cldn34d (ENSMUSG00000079525) #14 Tbl1x (ENSMUSG00000025246) #17 Prkx (ENSMUSG00000035725) #20 Pbsn (ENSMUSG00000000003) ##23 Gm14744 (ENSMUSG00000079522) #23 5430402E10Rik (ENSMUSG00000044121) #23 Obp1a (ENSMUSG00000067684) ##23 Gm5938 (ENSMUSG00000079521) ##23 Obp1b (ENSMUSG00000067679) ##23 Gm14743 (ENSMUSG00000079519) ##23 4930480E11Rik (ENSMUSG00000035651) ##31 Prrg1 (ENSMUSG00000047996) #29 Fam47c (ENSMUSG00000078315) #31 Cfap47 (ENSMUSG00000073077) #32 Mageb16 (ENSMUSG00000046942) #33 Tmem47 (ENSMUSG00000025666) #35 4930595M18Rik (ENSMUSG00000060673) Dmd (ENSMUSG00000045103) Tsga8 (ENSMUSG00000035522) Fthl17a (ENSMUSG00000035491) ##28 Tab3 (ENSMUSG00000035476) Gk (ENSMUSG00000025059) Tasl (ENSMUSG00000025058) Samt3 (ENSMUSG00000035454) Mus_C ANCESTRAL SPECIES 22 ENSGT00940000155485.e ENSGT00390000015719.d ENSGT00520000056155.g.b.b ENSGT00390000011425.B ENSGT01000000214434.B.b.e.a ENSGT00940000159499 ENSGT00950000182841.b.a.a.a.j ##28 ENSGT00940000154342.C ENSGT00720000109445 ENSGT00940000158553.b.a ENSGT00530000063484.b.b #35 ENSGT00940000159699 #32 ENSGT00940000163515.i #31 ENSGT00940000158538 #29 ENSGT00940000163515.j ##31 ENSGT01050000244868.a.a.a.b.a.b.a.a.b.c.b.e ##23 spretus DUPLICATION spretus MODERN SPECIES 19 Nr0b1 (MGP_SPRETEiJ_G0034385) Samt3 (MGP_SPRETEiJ_G0034384) Tasl (MGP_SPRETEiJ_G0034383) Gk (MGP_SPRETEiJ_G0034382) MGP_SPRETEiJ_G0034381 Fthl17a (MGP_SPRETEiJ_G0034380) ##28 Tsga8 (MGP_SPRETEiJ_G0034379) Dmd (MGP_SPRETEiJ_G0034378) 4930595M18Rik (MGP_SPRETEiJ_G0034377) Tmem47 (MGP_SPRETEiJ_G0034376) #35 MGP_SPRETEiJ_G0034375 #32 Fam47c (MGP_SPRETEiJ_G0034374) #31 Prrg1 (MGP_SPRETEiJ_G0034373) #29 4930480E11Rik (MGP_SPRETEiJ_G0034372) ##31 MGP_SPRETEiJ_G0034371 ##23 MGP_SPRETEiJ_G0034370 ##23 MGP_SPRETEiJ_G0034369 ##23 Prkx (MGP_SPRETEiJ_G0034368) #20 Tbl1x (MGP_SPRETEiJ_G0034367) #17 Cldn34d (MGP_SPRETEiJ_G0034366) #14 Cldn34b4 (MGP_SPRETEiJ_G0034365) #10 MGP_SPRETEiJ_G0034364 #11 MGP_SPRETEiJ_G0034363 #11 MGP_SPRETEiJ_G0034362 #11 Pls3 (MGP_SPRETEiJ_G0034361) Rab39b (MGP_SPRETEiJ_G0034360) Vbp1 (MGP_SPRETEiJ_G0034359) Brcc3 (MGP_SPRETEiJ_G0034358) Mtcp1 (MGP_SPRETEiJ_G0034357) Cmc4 (MGP_SPRETEiJ_G0034356) Fundc2 (MGP_SPRETEiJ_G0034355) spretus MODERN SPECIES 19 MGP_SPRETEiJ_G0034386 Nr0b1 (MGP_SPRETEiJ_G0034385) Samt3 (MGP_SPRETEiJ_G0034384) Tasl (MGP_SPRETEiJ_G0034383) Gk (MGP_SPRETEiJ_G0034382) MGP_SPRETEiJ_G0034381 Fthl17a (MGP_SPRETEiJ_G0034380) ##28 Tsga8 (MGP_SPRETEiJ_G0034379) Dmd (MGP_SPRETEiJ_G0034378) 4930595M18Rik (MGP_SPRETEiJ_G0034377) Tmem47 (MGP_SPRETEiJ_G0034376) #35 MGP_SPRETEiJ_G0034375 #32 Fam47c (MGP_SPRETEiJ_G0034374) #31 Prrg1 (MGP_SPRETEiJ_G0034373) #29 4930480E11Rik (MGP_SPRETEiJ_G0034372) ##31 MGP_SPRETEiJ_G0034371 ##23 MGP_SPRETEiJ_G0034370 ##23 MGP_SPRETEiJ_G0034369 ##23 Prkx (MGP_SPRETEiJ_G0034368) #20 Tbl1x (MGP_SPRETEiJ_G0034367) #17 Cldn34d (MGP_SPRETEiJ_G0034366) #14 Cldn34b4 (MGP_SPRETEiJ_G0034365) #10 MGP_SPRETEiJ_G0034364 #11 MGP_SPRETEiJ_G0034363 #11 MGP_SPRETEiJ_G0034362 #11 Pls3 (MGP_SPRETEiJ_G0034361) Rab39b (MGP_SPRETEiJ_G0034360) Vbp1 (MGP_SPRETEiJ_G0034359) Brcc3 (MGP_SPRETEiJ_G0034358) Mtcp1 (MGP_SPRETEiJ_G0034357) Cmc4 (MGP_SPRETEiJ_G0034356) Steppe mouse MODERN SPECIES 641 ENSMSIG00000009270 ##23 Mus DUPLICATION Mus ANCESTRAL SPECIES ENSGT01050000244868.a.a.a.b.a.b.a.a.b.c.b.f.a ##23 Mus_A ANCESTRAL SPECIES ENSGT01050000244868.a.a.a.b.a.b.a.a.b.c.b.f.a ##23 Mus_B ANCESTRAL SPECIES ENSGT01050000244868.a.a.a.b.a.b.a.a.b.c.b.f.a ##23 Mouse DUPLICATION Mouse MODERN SPECIES 37 Cmc4 (ENSMUSG00000090110) Mtcp1 (ENSMUSG00000031200) Brcc3 (ENSMUSG00000031201) Vbp1 (ENSMUSG00000031197) Rab39b (ENSMUSG00000031202) Pls3 (ENSMUSG00000016382) Cldn34b3 (ENSMUSG00000071738) #11 Cldn34b4 (ENSMUSG00000073085) #10 Cldn34d (ENSMUSG00000079525) #14 Tbl1x (ENSMUSG00000025246) #17 Prkx (ENSMUSG00000035725) #20 Pbsn (ENSMUSG00000000003) ##23 Gm14744 (ENSMUSG00000079522) #23 5430402E10Rik (ENSMUSG00000044121) #23 Obp1a (ENSMUSG00000067684) ##23 Gm5938 (ENSMUSG00000079521) ##23 Obp1b (ENSMUSG00000067679) ##23 Gm14743 (ENSMUSG00000079519) ##23 4930480E11Rik (ENSMUSG00000035651) ##31 Prrg1 (ENSMUSG00000047996) #29 Fam47c (ENSMUSG00000078315) #31 Cfap47 (ENSMUSG00000073077) #32 Mageb16 (ENSMUSG00000046942) #33 Tmem47 (ENSMUSG00000025666) #35 4930595M18Rik (ENSMUSG00000060673) Dmd (ENSMUSG00000045103) Tsga8 (ENSMUSG00000035522) Fthl17a (ENSMUSG00000035491) ##28 Tab3 (ENSMUSG00000035476) Gk (ENSMUSG00000025059) Tasl (ENSMUSG00000025058) Mouse MODERN SPECIES 37 Gk (ENSMUSG00000025059) Tab3 (ENSMUSG00000035476) Fthl17a (ENSMUSG00000035491) ##28 Tsga8 (ENSMUSG00000035522) Dmd (ENSMUSG00000045103) 4930595M18Rik (ENSMUSG00000060673) Tmem47 (ENSMUSG00000025666) #35 Mageb16 (ENSMUSG00000046942) #33 Cfap47 (ENSMUSG00000073077) #32 Fam47c (ENSMUSG00000078315) #31 Prrg1 (ENSMUSG00000047996) #29 4930480E11Rik (ENSMUSG00000035651) ##31 Gm14743 (ENSMUSG00000079519) ##23 Obp1b (ENSMUSG00000067679) ##23 Gm5938 (ENSMUSG00000079521) ##23 Obp1a (ENSMUSG00000067684) ##23 5430402E10Rik (ENSMUSG00000044121) #23 Gm14744 (ENSMUSG00000079522) #23 Pbsn (ENSMUSG00000000003) ##23 Prkx (ENSMUSG00000035725) #20 Tbl1x (ENSMUSG00000025246) #17 Cldn34d (ENSMUSG00000079525) #14 Cldn34b4 (ENSMUSG00000073085) #10 Cldn34b3 (ENSMUSG00000071738) #11 Pls3 (ENSMUSG00000016382) Rab39b (ENSMUSG00000031202) Vbp1 (ENSMUSG00000031197) Brcc3 (ENSMUSG00000031201) Mtcp1 (ENSMUSG00000031200) Cmc4 (ENSMUSG00000090110) Fundc2 (ENSMUSG00000031198) Mus_C ANCESTRAL SPECIES ENSGT01050000244868.a.a.a.b.a.b.a.a.b.c.b.f.a ##23 Steppe mouse MODERN SPECIES 1642 ENSMSIG00000008886 ##23 Shrew mouse MODERN SPECIES 23 Gab3 (MGP_PahariEiJ_G0031734) Dkc1 (MGP_PahariEiJ_G0031735) Mpp1 (MGP_PahariEiJ_G0031736) Smim9 (MGP_PahariEiJ_G0031737) F8 (MGP_PahariEiJ_G0031738) Fundc2 (MGP_PahariEiJ_G0031739) Cmc4 (MGP_PahariEiJ_G0031740) Mtcp1 (MGP_PahariEiJ_G0031741) Brcc3 (MGP_PahariEiJ_G0031742) Pls3 (MGP_PahariEiJ_G0031743) Cldn34b4 (MGP_PahariEiJ_G0031744) #10 Cldn34d (MGP_PahariEiJ_G0031745) #14 Tbl1x (MGP_PahariEiJ_G0031746) #17 Prkx (MGP_PahariEiJ_G0031747) #20 Pbsn (MGP_PahariEiJ_G0031748) ##23 MGP_PahariEiJ_G0031749 ##23 Prrg1 (MGP_PahariEiJ_G0031750) #29 Fam47c (MGP_PahariEiJ_G0031751) #31 MGP_PahariEiJ_G0031752 #32 Mageb16 (MGP_PahariEiJ_G0031753) #33 Tmem47 (MGP_PahariEiJ_G0031754) #35 4930595M18Rik (MGP_PahariEiJ_G0031755) Dmd (MGP_PahariEiJ_G0031756) Fthl17a (MGP_PahariEiJ_G0031757) ##28 MGP_PahariEiJ_G0031758 Gk (MGP_PahariEiJ_G0031759) Tasl (MGP_PahariEiJ_G0031760) Nr0b1 (MGP_PahariEiJ_G0031761) MGP_PahariEiJ_G0031762 Il1rapl1 (MGP_PahariEiJ_G0031763) 4930415L06Rik (MGP_PahariEiJ_G0031764) Mus ANCESTRAL SPECIES 9 ENSGT00510000047092 ENSGT00940000158744 ENSGT00390000005685 ENSGT00940000160294 ENSGT00940000154783.f ENSGT00390000012647.d ENSGT00390000006885.a ENSGT00390000000360.r.b.a.a ENSGT00390000018904 ENSGT00940000158132 ENSGT00950000183097.a.a.a ENSGT00390000005717.e.b.b.b #10 ENSGT00390000005717.e.b.a #14 ENSGT00940000153421.a.a.a.a.b #17 ENSGT00940000159832 #20 ENSGT01050000244868.a.a.a.b.a.b.a.a.b.c.b.f.b ##23 ENSGT00940000163515.j ##31 ENSGT00940000158538 #29 ENSGT00940000163515.i #31 ENSGT00940000159699 #32 ENSGT00940000162825 #33 ENSGT00530000063484.b.b #35 ENSGT00940000158553.b.a ENSGT00720000109445 ENSGT00940000154342.C ENSGT00950000182841.b.a.a.a.j ##28 ENSGT00940000159499 ENSGT01000000214434.B.b.e.a ENSGT00390000011425.B ENSGT00520000056155.g.b.b ENSGT00390000015719.d Mus_A ANCESTRAL SPECIES 15 ENSGT00510000047092 ENSGT00940000158744 ENSGT00390000005685 ENSGT00940000160294 ENSGT00940000154783.f ENSGT00390000012647.d ENSGT00390000006885.a ENSGT00390000000360.r.b.a.a ENSGT00390000018904 ENSGT00940000158132 ENSGT00950000183097.a.a.a ENSGT00390000005717.e.b.b.b #10 ENSGT00390000005717.e.b.a #14 ENSGT00940000153421.a.a.a.a.b #17 ENSGT00940000159832 #20 ENSGT01050000244868.a.a.a.b.a.b.a.a.b.c.b.f.b ##23 ENSGT00940000163515.j ##31 ENSGT00940000158538 #29 ENSGT00940000163515.i #31 ENSGT00940000159699 #32 ENSGT00940000162825 #33 ENSGT00530000063484.b.b #35 ENSGT00940000158553.b.a ENSGT00720000109445 ENSGT00940000154342.C ENSGT00950000182841.b.a.a.a.j ##28 ENSGT00940000159499 ENSGT01000000214434.B.b.e.a ENSGT00390000011425.B ENSGT00520000056155.g.b.b ENSGT00390000015719.d Mus_B ANCESTRAL SPECIES 14 ENSGT00940000158744 ENSGT00390000005685 ENSGT00940000160294 ENSGT00940000154783.f ENSGT00390000012647.d ENSGT00390000006885.a ENSGT00390000000360.r.b.a.a ENSGT00390000018904 ENSGT00940000158132 ENSGT00950000183097.a.a.a ENSGT00390000005717.e.b.b.a.e.a #11 ENSGT00390000005717.e.b.b.b #10 ENSGT00390000005717.e.b.a #14 ENSGT00940000153421.a.a.a.a.b #17 ENSGT00940000159832 #20 ENSGT01050000244868.a.a.a.b.a.b.a.a.b.c.b.f.b ##23 ENSGT01050000244868.a.a.a.b.a.b.a.a.b.c.b.e ##23 ENSGT00940000163515.j ##31 ENSGT00940000158538 #29 ENSGT00940000163515.i #31 ENSGT00940000159699 #32 ENSGT00940000162825 #33 ENSGT00530000063484.b.b #35 ENSGT00940000158553.b.a ENSGT00720000109445 ENSGT00940000154342.C ENSGT00950000182841.b.a.a.a.j ##28 ENSGT00940000159499 ENSGT01000000214434.B.b.e.a ENSGT00390000011425.B ENSGT00520000056155.g.b.b Mus_C ANCESTRAL SPECIES 93 ENSGT00940000159832 #20 ENSGT01050000244868.a.a.a.b.a.b.a.a.b.c.b.f.b ##23 spretus MODERN SPECIES 19 F8 (MGP_SPRETEiJ_G0034354) Fundc2 (MGP_SPRETEiJ_G0034355) Cmc4 (MGP_SPRETEiJ_G0034356) Mtcp1 (MGP_SPRETEiJ_G0034357) Brcc3 (MGP_SPRETEiJ_G0034358) Vbp1 (MGP_SPRETEiJ_G0034359) Rab39b (MGP_SPRETEiJ_G0034360) Pls3 (MGP_SPRETEiJ_G0034361) MGP_SPRETEiJ_G0034362 #11 MGP_SPRETEiJ_G0034363 #11 MGP_SPRETEiJ_G0034364 #11 Cldn34b4 (MGP_SPRETEiJ_G0034365) #10 Cldn34d (MGP_SPRETEiJ_G0034366) #14 Tbl1x (MGP_SPRETEiJ_G0034367) #17 Prkx (MGP_SPRETEiJ_G0034368) #20 MGP_SPRETEiJ_G0034369 ##23 MGP_SPRETEiJ_G0034370 ##23 MGP_SPRETEiJ_G0034371 ##23 4930480E11Rik (MGP_SPRETEiJ_G0034372) ##31 Prrg1 (MGP_SPRETEiJ_G0034373) #29 Fam47c (MGP_SPRETEiJ_G0034374) #31 MGP_SPRETEiJ_G0034375 #32 Tmem47 (MGP_SPRETEiJ_G0034376) #35 4930595M18Rik (MGP_SPRETEiJ_G0034377) Dmd (MGP_SPRETEiJ_G0034378) Tsga8 (MGP_SPRETEiJ_G0034379) Fthl17a (MGP_SPRETEiJ_G0034380) ##28 MGP_SPRETEiJ_G0034381 Gk (MGP_SPRETEiJ_G0034382) Tasl (MGP_SPRETEiJ_G0034383) Samt3 (MGP_SPRETEiJ_G0034384) Steppe mouse MODERN SPECIES 1553 ENSMSIG00000029391 ##23 ENSMSIG00000029388 Muroidea_A ANCESTRAL SPECIES 46 ENSGT00940000162022 #27 ENSGT00940000161153 #26 ENSGT01050000244868.a.a.a.b.a.b.a.a.b.c.a #23 ENSGT01050000244868.a.a.a.b.a.b.a.a.b.d ##23 ENSGT00940000159832 #20 Murinae ANCESTRAL SPECIES 107 ENSGT01050000244868.a.a.a.b.a.b.a.a.b.c.a #23 ENSGT01050000244868.a.a.a.b.a.b.a.a.b.d ##23 Mus ANCESTRAL SPECIES 90 ENSGT01050000244868.a.a.a.b.a.b.a.a.b.c.a #23 ENSGT01050000244868.a.a.a.b.a.b.a.a.b.d ##23 Mus_A ANCESTRAL SPECIES 79 ENSGT01050000244868.a.a.a.b.a.b.a.a.b.c.a #23 ENSGT01050000244868.a.a.a.b.a.b.a.a.b.d ##23 Mus_B ANCESTRAL SPECIES 93 ENSGT01050000244868.a.a.a.b.a.b.a.a.b.c.a #23 ENSGT01050000244868.a.a.a.b.a.b.a.a.b.d ##23 Mus_C ANCESTRAL SPECIES 80 ENSGT01050000244868.a.a.a.b.a.b.a.a.b.c.a #23 ENSGT01050000244868.a.a.a.b.a.b.a.a.b.d ##23 Steppe mouse MODERN SPECIES 1669 ENSMSIG00000014866 #23 Pbsn (ENSMSIG00000014814) ##23 Mouse MODERN SPECIES 37 Tsga8 (ENSMUSG00000035522) Dmd (ENSMUSG00000045103) 4930595M18Rik (ENSMUSG00000060673) Tmem47 (ENSMUSG00000025666) #35 Mageb16 (ENSMUSG00000046942) #33 Cfap47 (ENSMUSG00000073077) #32 Fam47c (ENSMUSG00000078315) #31 Prrg1 (ENSMUSG00000047996) #29 4930480E11Rik (ENSMUSG00000035651) ##31 Gm14743 (ENSMUSG00000079519) ##23 Obp1b (ENSMUSG00000067679) ##23 Gm5938 (ENSMUSG00000079521) ##23 Obp1a (ENSMUSG00000067684) ##23 5430402E10Rik (ENSMUSG00000044121) #23 Gm14744 (ENSMUSG00000079522) #23 Pbsn (ENSMUSG00000000003) ##23 Prkx (ENSMUSG00000035725) #20 Tbl1x (ENSMUSG00000025246) #17 Cldn34d (ENSMUSG00000079525) #14 Cldn34b4 (ENSMUSG00000073085) #10 Cldn34b3 (ENSMUSG00000071738) #11 Pls3 (ENSMUSG00000016382) Rab39b (ENSMUSG00000031202) Vbp1 (ENSMUSG00000031197) Brcc3 (ENSMUSG00000031201) Mtcp1 (ENSMUSG00000031200) Cmc4 (ENSMUSG00000090110) Fundc2 (ENSMUSG00000031198) F8 (ENSMUSG00000031196) Smim9 (ENSMUSG00000073094) Mpp1 (ENSMUSG00000031402) Ryukyu mouse MODERN SPECIES 19 Samt3 (MGP_CAROLIEiJ_G0033219) Tasl (MGP_CAROLIEiJ_G0033218) Gk (MGP_CAROLIEiJ_G0033217) MGP_CAROLIEiJ_G0033216 Fthl17a (MGP_CAROLIEiJ_G0033215) ##28 MGP_CAROLIEiJ_G0033214 Dmd (MGP_CAROLIEiJ_G0033213) MGP_CAROLIEiJ_G0033212 Tmem47 (MGP_CAROLIEiJ_G0033211) #35 Mageb16 (MGP_CAROLIEiJ_G0033210) #33 MGP_CAROLIEiJ_G0033209 #32 Fam47c (MGP_CAROLIEiJ_G0033208) #31 Prrg1 (MGP_CAROLIEiJ_G0033207) #29 MGP_CAROLIEiJ_G0033205 #23 MGP_CAROLIEiJ_G0033206 #23 Pbsn (MGP_CAROLIEiJ_G0033204) ##23 Prkx (MGP_CAROLIEiJ_G0033203) #20 Tbl1x (MGP_CAROLIEiJ_G0033202) #17 Cldn34d (MGP_CAROLIEiJ_G0033201) #14 Cldn34b4 (MGP_CAROLIEiJ_G0033200) #10 Pls3 (MGP_CAROLIEiJ_G0033199) MGP_CAROLIEiJ_G0033198 Mtcp1 (MGP_CAROLIEiJ_G0033197) Cmc4 (MGP_CAROLIEiJ_G0033196) Fundc2 (MGP_CAROLIEiJ_G0033195) F8 (MGP_CAROLIEiJ_G0033194) Smim9 (MGP_CAROLIEiJ_G0033193) Mpp1 (MGP_CAROLIEiJ_G0033192) Dkc1 (MGP_CAROLIEiJ_G0033191) Or13ae2 (MGP_CAROLIEiJ_G0033190) Or7r1 (MGP_CAROLIEiJ_G0033189) Shrew mouse MODERN SPECIES 23 Il1rapl1 (MGP_PahariEiJ_G0031763) MGP_PahariEiJ_G0031762 Nr0b1 (MGP_PahariEiJ_G0031761) Tasl (MGP_PahariEiJ_G0031760) Gk (MGP_PahariEiJ_G0031759) MGP_PahariEiJ_G0031758 Fthl17a (MGP_PahariEiJ_G0031757) ##28 Dmd (MGP_PahariEiJ_G0031756) 4930595M18Rik (MGP_PahariEiJ_G0031755) Tmem47 (MGP_PahariEiJ_G0031754) #35 Mageb16 (MGP_PahariEiJ_G0031753) #33 MGP_PahariEiJ_G0031752 #32 Fam47c (MGP_PahariEiJ_G0031751) #31 Prrg1 (MGP_PahariEiJ_G0031750) #29 MGP_PahariEiJ_G0031749 ##23 Pbsn (MGP_PahariEiJ_G0031748) ##23 Prkx (MGP_PahariEiJ_G0031747) #20 Tbl1x (MGP_PahariEiJ_G0031746) #17 Cldn34d (MGP_PahariEiJ_G0031745) #14 Cldn34b4 (MGP_PahariEiJ_G0031744) #10 Pls3 (MGP_PahariEiJ_G0031743) Brcc3 (MGP_PahariEiJ_G0031742) Mtcp1 (MGP_PahariEiJ_G0031741) Cmc4 (MGP_PahariEiJ_G0031740) Fundc2 (MGP_PahariEiJ_G0031739) F8 (MGP_PahariEiJ_G0031738) Smim9 (MGP_PahariEiJ_G0031737) Mpp1 (MGP_PahariEiJ_G0031736) Dkc1 (MGP_PahariEiJ_G0031735) Gab3 (MGP_PahariEiJ_G0031734) Or13ae2 (MGP_PahariEiJ_G0031733) Cricetidae ANCESTRAL SPECIES 8 ENSGT01090000260076.b.b ENSGT00390000015719.d ENSGT00520000056155.g.b.b ENSGT00390000011425.B ENSGT01000000214434.B.b.e.a ENSGT00940000159499 ENSGT00950000182841.b.a.a.a.j ##28 ENSGT00940000154342.C ENSGT00530000063484.b.b #35 ENSGT00940000162492.f ENSGT00940000162825 #33 ENSGT00940000159699 #32 ENSGT00940000163515.i #31 ENSGT00940000158538 #29 ENSGT01050000244868.a.a.a.b.a.b.a.a.b.c.a #23 ENSGT01050000244868.a.a.a.b.a.b.a.a.b.d ##23 ENSGT00940000159832 #20 ENSGT00940000153421.a.a.a.a.b #17 ENSGT00390000005717.e.b.a #14 ENSGT00390000005717.e.b.b.a #11 ENSGT00390000005717.e.b.b.b #10 ENSGT00950000183121.b.b.b.b ENSGT00390000005330 ENSGT00940000153430.a.a ENSGT00940000157080 ENSGT00940000157313 ENSGT00870000136506.cc.a ENSGT00510000048066 ENSGT00390000017542 ENSGT00940000162424 ENSGT00940000156709 Cricetidae_B ANCESTRAL SPECIES 36 ENSGT00390000011425.B ENSGT00520000056155.g.b.b ENSGT00390000015719.d ENSGT00940000155485.e ENSGT00940000164194 ENSGT00940000155485.f.a.a ENSGT00940000155485.f.b ENSGT01090000260076.b.b ENSGT00530000063484.b.b #35 ENSGT00940000162492.f ENSGT00940000162825 #33 ENSGT00940000159699 #32 ENSGT00940000163515.i #31 ENSGT00940000158538 #29 ENSGT01050000244868.a.a.a.b.a.b.a.a.b.c.b ##23 ENSGT01050000244868.a.a.a.b.a.b.a.a.b.d ##23 ENSGT00940000159832 #20 ENSGT00940000153421.a.a.a.a.b #17 ENSGT00390000005717.e.b.a #14 ENSGT00390000005717.e.b.b.a #11 ENSGT00390000005717.e.b.b.b #10 ENSGT00950000183121.b.b.b.b ENSGT00390000005330 ENSGT00940000153430.a.a ENSGT00940000157080 ENSGT00940000157313 ENSGT00870000136506.cc.a ENSGT00510000048066 ENSGT00390000017542 ENSGT00940000162424 ENSGT00940000156709 Prairie vole MODERN SPECIES 360 Stard8 (ENSMOCG00000000274) ENSMOCG00000000213 Yipf6 (ENSMOCG00000004509) Ophn1 (ENSMOCG00000011502) ENSMOCG00000018755 ENSMOCG00000001177 ENSMOCG00000017157 Eda2r (ENSMOCG00000020804) Pgr15l (ENSMOCG00000004906) Gpr165 (ENSMOCG00000003694) Heph (ENSMOCG00000017685) Hsf3 (ENSMOCG00000003224) Vsig4 (ENSMOCG00000000197) Msn (ENSMOCG00000010407) ENSMOCG00000019602 ##23 Pbsn (ENSMOCG00000005173) ##23 Prkx (ENSMOCG00000003139) #20 Tbl1x (ENSMOCG00000002063) #17 ENSMOCG00000013562 ENSMOCG00000019029 Mageb16 (ENSMOCG00000002574) #33 ENSMOCG00000018300 Cfap47 (ENSMOCG00000020168) #32 ENSMOCG00000019110 Prrg1 (ENSMOCG00000015594) #29 ENSMOCG00000018722 ##12 ENSMOCG00000008368 Diaph2 (ENSMOCG00000004544) ENSMOCG00000016427 Pcdh19 (ENSMOCG00000013710) Tnmd (ENSMOCG00000000192) Northern American deer mouse MODERN SPECIES 475 ENSPEMG00000019379 Tmem47 (ENSPEMG00000029078) #35 ENSPEMG00000026179 Mageb16 (ENSPEMG00000023768) #33 ENSPEMG00000028268 Cfap47 (ENSPEMG00000022325) #32 Fam47c (ENSPEMG00000030109) #31 Prrg1 (ENSPEMG00000030282) #29 4930480E11Rik (ENSPEMG00000028721) ##31 ENSPEMG00000030251 ENSPEMG00000023943 ##23 ENSPEMG00000024840 ENSPEMG00000015794 #23 ENSPEMG00000027218 #21 ENSPEMG00000023281 Pbsn (ENSPEMG00000012253) ##23 Prkx (ENSPEMG00000030408) #20 ENSPEMG00000030079 #18 Tbl1x (ENSPEMG00000017480) #17 ENSPEMG00000029386 #14 ENSPEMG00000025248 ENSPEMG00000025316 ENSPEMG00000026374 #11 Cldn34b4 (ENSPEMG00000003717) #10 ENSPEMG00000026202 #11 ENSPEMG00000025993 #14 Sat1 (ENSPEMG00000001319) ENSPEMG00000002650 ENSPEMG00000028779 ENSPEMG00000017644 Prdx4 (ENSPEMG00000015131) Cricetinae ANCESTRAL SPECIES 17 ENSGT00390000018199.b.b.b ENSGT00950000182900.D.d.b ENSGT01090000260076.b.b ENSGT00390000015719.d ENSGT00390000011425.B ENSGT01000000214434.B.b.e.a ENSGT00940000159499 ENSGT00950000182841.b.a.a.a.j ##28 ENSGT00940000154342.C ENSGT00530000063484.b.b #35 ENSGT00940000162825 #33 ENSGT00940000159699 #32 ENSGT00940000162492.f ENSGT00940000158538 #29 ENSGT01050000244868.a.a.a.b.a.b.a.a.b.c.a #23 ENSGT01050000244868.a.a.a.b.a.b.a.a.b.d ##23 ENSGT00940000159832 #20 ENSGT00940000153421.a.a.a.a.b #17 ENSGT00950000183121.b.b.b.b ENSGT00390000005330 ENSGT00940000153430.a.a ENSGT00940000157080 ENSGT00940000157313 ENSGT00870000136506.cc.a ENSGT00510000048066 ENSGT00390000017542 ENSGT00940000162424 ENSGT00940000156709 ENSGT00940000159370 ENSGT00390000008256.j.b ENSGT00950000182941.b.b Chinese hamster chok1gshd MODERN SPECIES 230 ENSCGRG00001004625 ENSCGRG00001004831 ENSCGRG00001013660 Mageb16 (ENSCGRG00001005887) #33 Cfap47 (ENSCGRG00001011946) #32 ENSCGRG00001013088 ENSCGRG00001015309 Fam47c (ENSCGRG00001013363) #31 ENSCGRG00001016254 Prrg1 (ENSCGRG00001018689) #29 ENSCGRG00001019344 ENSCGRG00001000265 ##23 ENSCGRG00001017585 ##23 ENSCGRG00001019539 ##23 ENSCGRG00001000213 #23 Pbsn (ENSCGRG00001011020) ##23 Prkx (ENSCGRG00001011584) #20 Tbl1x (ENSCGRG00001016098) #17 ENSCGRG00001013770 ENSCGRG00001017212 ENSCGRG00001013899 Cldn34d (ENSCGRG00001014236) #14 ENSCGRG00001013998 #11 SAT1 (ENSCGRG00001022103) ENSCGRG00001000350 Prdx4 (ENSCGRG00001009299) Ptchd1 (ENSCGRG00001010854) ENSCGRG00001015828 ENSCGRG00001015986 Phex (ENSCGRG00001019759) ENSCGRG00001000646 Golden Hamster MODERN SPECIES 695 Pbsn (ENSMAUG00000012035) ##23 Prkx (ENSMAUG00000016058) #20 ENSMAUG00000018492 ENSMAUG00000016228 #18 Tbl1x (ENSMAUG00000006903) #17 Sat1 (ENSMAUG00000019369) ENSMAUG00000008759 Prdx4 (ENSMAUG00000021607) Ptchd1 (ENSMAUG00000002646) Ptger4 (ENSMAUG00000014264) ENSMAUG00000015397 C9 (ENSMAUG00000018301) Fyb (ENSMAUG00000001181) Rictor (ENSMAUG00000013015) Osmr (ENSMAUG00000019728) Lifr (ENSMAUG00000015733) Rodentia_A ANCESTRAL SPECIES 103 ENSGT01030000235420 #21 ENSGT01050000244868.a.a.a.b.a.b.a.a.b #23 Hystricomorpha ANCESTRAL SPECIES 67 ENSGT00520000056155 ENSGT00940000155212 ENSGT00390000016722 ENSGT00940000153421.a.a.a.a.b #17 ENSGT00440000033720.a ENSGT00940000162022 #27 ENSGT00940000161153 #26 ENSGT00390000014753.h ENSGT00940000156607.a.a ENSGT01030000235420 #21 ENSGT01050000244868.a.a.a.b.a.b.a.a.b #23 ENSGT00940000159832 #20 ENSGT00940000159942.a ENSGT00940000162925 ENSGT00940000161140 ENSGT00940000161628 ENSGT00510000049811 ENSGT00940000154344.b ENSGT00940000163186 ENSGT00940000162345 ENSGT00940000161561 ENSGT00440000039314.a.e.b ENSGT01050000244840.B ENSGT00940000162413 ENSGT00940000154622.b ENSGT00940000163802 Hystricomorpha_a DUPLICATION Hystricomorpha_a ANCESTRAL SPECIES 82 ENSGT00520000056155 ENSGT00940000155212 ENSGT00390000016722 ENSGT00940000153421.a.a.a.a.b #17 ENSGT00440000033720.a ENSGT00940000162022 #27 ENSGT00940000161153 #26 ENSGT00390000014753.h ENSGT00940000156607.a.a ENSGT01050000244868.a.a.a.b.a.b.a.a.b.e #23 ENSGT00940000159832 #20 ENSGT00940000159942.a ENSGT00940000163319 ENSGT00940000161628 ENSGT00940000161561 ENSGT00440000039314.a.e.a.a ENSGT00520000055993.f ENSGT00510000049974 ENSGT00940000154287.a Hystricomorpha_b ANCESTRAL SPECIES 116 ENSGT00940000155212 ENSGT00390000016722 ENSGT00940000153421.a.a.a.a.b #17 ENSGT00440000033720.a ENSGT00940000162022 #27 ENSGT00940000161153 #26 ENSGT00390000014753.h ENSGT00940000156607.a.a ENSGT01050000244868.a.a.a.b.a.b.a.a.b.e #23 ENSGT00940000159832 #20 ENSGT00940000159942.a ENSGT00940000163319 ENSGT00940000161628 ENSGT00940000161561 ENSGT00440000039314.a.e.a.a ENSGT00520000055993.f ENSGT00510000049974 ENSGT00940000154287.a Long-tailed chinchilla MODERN SPECIES 206 SHROOM2 (ENSCLAG00000000344) GPR143 (ENSCLAG00000000235) ENSCLAG00000000233 #17 ANOS1 (ENSCLAG00000000196) PNPLA4 (ENSCLAG00000000140) #27 STS (ENSCLAG00000000517) #26 PUDP (ENSCLAG00000000477) ENSCLAG00000000393 ENSCLAG00000000341 #23 PRKX (ENSCLAG00000000304) #20 MXRA5 (ENSCLAG00000000278) ARSL (ENSCLAG00000000445) GYG2 (ENSCLAG00000000399) ASMT (ENSCLAG00000000340) ENSCLAG00000000107 ENSCLAG00000000101 ENSCLAG00000000068 SHOX (ENSCLAG00000000063) ENSCLAG00000000054 ENSCLAG00000000052 ENSCLAG00000000050 ENSCLAG00000000042 ENSCLAG00000000038 Guinea pig MODERN SPECIES 121 ENSCPOG00000031010 PNPLA4 (ENSCPOG00000000514) #27 PUDP (ENSCPOG00000032272) ENSCPOG00000020220 #23 ENSCPOG00000024961 #21 ENSCPOG00000037628 #23 Hystricomorpha_a ANCESTRAL SPECIES 138 ENSGT01030000235420 #21 ENSGT01050000244868.a.a.a.b.a.b.a.a.b.f #23 Guinea pig MODERN SPECIES 121 ENSCPOG00000031010 PNPLA4 (ENSCPOG00000000514) #27 PUDP (ENSCPOG00000032272) ENSCPOG00000020220 #23 ENSCPOG00000024961 #21 ENSCPOG00000037628 #23 Naked mole-rat female DUPLICATION Naked mole-rat female MODERN SPECIES 31 ENSHGLG00000000617 ENSHGLG00000000608 ENSHGLG00000020169 PNPLA4 (ENSHGLG00000000567) #27 ENSHGLG00000000554 STS (ENSHGLG00000032920) #26 ENSHGLG00000000501 ENSHGLG00000043404 ENSHGLG00000032832 ENSHGLG00000000483 ENSHGLG00000000454 #23 ENSHGLG00000043437 #23 ENSHGLG00000049676 ENSHGLG00000000437 ENSHGLG00000050675 ENSHGLG00000040874 #20 MXRA5 (ENSHGLG00000000410) ARSH (ENSHGLG00000000397) ENSHGLG00000000383 ENSHGLG00000034970 ENSHGLG00000042600 GYG2 (ENSHGLG00000000373) ENSHGLG00000037006 CD99 (ENSHGLG00000042721) ENSHGLG00000045608 ZBED1 (ENSHGLG00000035208) Naked mole-rat female MODERN SPECIES 31 ENSHGLG00000000617 ENSHGLG00000000608 ENSHGLG00000020169 PNPLA4 (ENSHGLG00000000567) #27 ENSHGLG00000000554 STS (ENSHGLG00000032920) #26 ENSHGLG00000000501 ENSHGLG00000043404 ENSHGLG00000032832 ENSHGLG00000000483 ENSHGLG00000000454 #23 ENSHGLG00000043437 #23 ENSHGLG00000049676 ENSHGLG00000000437 ENSHGLG00000050675 ENSHGLG00000040874 #20 MXRA5 (ENSHGLG00000000410) ARSH (ENSHGLG00000000397) ENSHGLG00000000383 ENSHGLG00000034970 ENSHGLG00000042600 GYG2 (ENSHGLG00000000373) ENSHGLG00000037006 CD99 (ENSHGLG00000042721) ENSHGLG00000045608 ZBED1 (ENSHGLG00000035208) DHRSX (ENSHGLG00000044121) Sciuridae ANCESTRAL SPECIES 56 ENSGT00520000055993.e ENSGT00940000162883 ENSGT00940000162413 ENSGT01050000244840.B ENSGT00440000039314.a.f ENSGT00940000161561 ENSGT00940000162345 ENSGT00940000164022 ENSGT00940000154344.b ENSGT00940000161628 ENSGT00940000161140 ENSGT00940000163319 ENSGT00940000162925 ENSGT00940000159942.a ENSGT00940000159832 #20 ENSGT01050000244868.a.a.a.b.a.b.a.a.b #23 ENSGT00940000156607.a.a ENSGT00390000014753.h ENSGT00940000161153 #26 ENSGT00940000162022 #27 ENSGT00440000033720.a ENSGT00940000153421.a.a.a.a.b #17 ENSGT00390000016722 ENSGT00940000155212 ENSGT00390000005717 #18 ENSGT00940000155202.i.a ENSGT00940000154443.b.b ENSGT00940000155375.d Marmotini ANCESTRAL SPECIES 94 ENSGT00940000161625 ENSGT00390000001397 ENSGT00940000154622.b ENSGT00940000162413 ENSGT01050000244840.B ENSGT00440000039314.a.f ENSGT00940000161561 ENSGT00940000164022 ENSGT00940000154344.b ENSGT00940000161628 ENSGT00940000161140 ENSGT00940000162925 ENSGT00940000159942.a ENSGT00940000159832 #20 ENSGT01050000244868.a.a.a.b.a.b.a.a.b #23 ENSGT00940000156607.a.a ENSGT00390000014753.h ENSGT00940000161153 #26 ENSGT00940000162022 #27 ENSGT00440000033720.a ENSGT00940000153421.a.a.a.a.b #17 ENSGT00390000016722 ENSGT00940000155212 ENSGT00390000005717 #18 ENSGT00940000155202.i.a ENSGT00940000154443.b.b ENSGT00940000155375.d Marmotini_b DUPLICATION Marmotini_b ANCESTRAL SPECIES 179 ENSGT00390000005717 #18 ENSGT00940000155212 ENSGT00390000016722 ENSGT00940000153421.a.a.a.a.b #17 ENSGT00440000033720.a ENSGT00940000162022 #27 ENSGT00940000161153 #26 ENSGT00390000014753.h ENSGT00940000156607.a.a ENSGT01050000244868.a.a.a.b.a.b.a.a.b.i #23 ENSGT01050000244868.a.a.a.b.a.b.a.a.b.j.a #23 ENSGT00940000159832 #20 ENSGT00940000161140 ENSGT00940000161628 ENSGT00940000154344.b ENSGT00940000164022 ENSGT00940000161561 ENSGT00440000039314.a.f ENSGT01050000244840.B ENSGT00940000162413 ENSGT00940000154622.b ENSGT00390000001397 ENSGT00940000161625 Squirrel DUPLICATION Squirrel MODERN SPECIES 244 PLCXD1 (ENSSTOG00000022760) ENSSTOG00000011576 ENSSTOG00000025933 P2RY8 (ENSSTOG00000020417) AKAP17A (ENSSTOG00000021816) ENSSTOG00000025091 CD99 (ENSSTOG00000021254) ARSD (ENSSTOG00000019946) ENSSTOG00000024642 ENSSTOG00000034793 ENSSTOG00000029621 PRKX (ENSSTOG00000022705) #20 ENSSTOG00000020714 #23 ENSSTOG00000025226 #23 ENSSTOG00000028400 #23 ENSSTOG00000020015 #23 ENSSTOG00000023040 STS (ENSSTOG00000020247) #26 PNPLA4 (ENSSTOG00000024808) #27 ANOS1 (ENSSTOG00000000380) ENSSTOG00000014293 #17 GPR143 (ENSSTOG00000014309) SHROOM2 (ENSSTOG00000005794) Squirrel MODERN SPECIES 244 SHROOM2 (ENSSTOG00000005794) GPR143 (ENSSTOG00000014309) ENSSTOG00000014293 #17 ANOS1 (ENSSTOG00000000380) PNPLA4 (ENSSTOG00000024808) #27 STS (ENSSTOG00000020247) #26 ENSSTOG00000023040 ENSSTOG00000020015 #23 ENSSTOG00000028400 #23 ENSSTOG00000025226 #23 ENSSTOG00000020714 #23 PRKX (ENSSTOG00000022705) #20 ENSSTOG00000029621 ENSSTOG00000034793 ENSSTOG00000024642 ARSD (ENSSTOG00000019946) CD99 (ENSSTOG00000021254) ENSSTOG00000025091 AKAP17A (ENSSTOG00000021816) P2RY8 (ENSSTOG00000020417) ENSSTOG00000025933 ENSSTOG00000011576 PLCXD1 (ENSSTOG00000022760) Marmotini_b DUPLICATION Marmotini_b ANCESTRAL SPECIES 179 ENSGT00940000161625 ENSGT00390000001397 ENSGT00940000154622.b ENSGT00940000162413 ENSGT01050000244840.B ENSGT00440000039314.a.f ENSGT00940000161561 ENSGT00940000164022 ENSGT00940000154344.b ENSGT00940000161628 ENSGT00940000161140 ENSGT00940000159832 #20 ENSGT01050000244868.a.a.a.b.a.b.a.a.b.j.a #23 ENSGT01050000244868.a.a.a.b.a.b.a.a.b.i #23 ENSGT00940000156607.a.a ENSGT00390000014753.h ENSGT00940000161153 #26 ENSGT00940000162022 #27 ENSGT00440000033720.a ENSGT00940000153421.a.a.a.a.b #17 ENSGT00390000016722 ENSGT00940000155212 ENSGT00390000005717 #18 Arctic ground squirrel MODERN SPECIES 723 ARSH (ENSUPAG00010011722) MXRA5 (ENSUPAG00010011714) ENSUPAG00010011680 #23 Squirrel MODERN SPECIES 244 PLCXD1 (ENSSTOG00000022760) ENSSTOG00000011576 ENSSTOG00000025933 P2RY8 (ENSSTOG00000020417) AKAP17A (ENSSTOG00000021816) ENSSTOG00000025091 CD99 (ENSSTOG00000021254) ARSD (ENSSTOG00000019946) ENSSTOG00000024642 ENSSTOG00000034793 ENSSTOG00000029621 PRKX (ENSSTOG00000022705) #20 ENSSTOG00000020714 #23 ENSSTOG00000025226 #23 ENSSTOG00000028400 #23 ENSSTOG00000020015 #23 ENSSTOG00000023040 STS (ENSSTOG00000020247) #26 PNPLA4 (ENSSTOG00000024808) #27 ANOS1 (ENSSTOG00000000380) ENSSTOG00000014293 #17 GPR143 (ENSSTOG00000014309) SHROOM2 (ENSSTOG00000005794) Marmotini_b ANCESTRAL SPECIES ENSGT01050000244868.a.a.a.b.a.b.a.a.b.j.b #23 Squirrel MODERN SPECIES 244 PLCXD1 (ENSSTOG00000022760) ENSSTOG00000011576 ENSSTOG00000025933 P2RY8 (ENSSTOG00000020417) AKAP17A (ENSSTOG00000021816) ENSSTOG00000025091 CD99 (ENSSTOG00000021254) ARSD (ENSSTOG00000019946) ENSSTOG00000024642 ENSSTOG00000034793 ENSSTOG00000029621 PRKX (ENSSTOG00000022705) #20 ENSSTOG00000020714 #23 ENSSTOG00000025226 #23 ENSSTOG00000028400 #23 ENSSTOG00000020015 #23 ENSSTOG00000023040 STS (ENSSTOG00000020247) #26 PNPLA4 (ENSSTOG00000024808) #27 ANOS1 (ENSSTOG00000000380) ENSSTOG00000014293 #17 GPR143 (ENSSTOG00000014309) SHROOM2 (ENSSTOG00000005794) Eurasian red squirrel MODERN SPECIES 156 PPP2R3B (ENSSVLG00005024951) SHOX (ENSSVLG00005024909) ENSSVLG00005024885 ENSSVLG00005024851 SLC25A6 (ENSSVLG00005024831) ASMTL (ENSSVLG00005024762) P2RY8 (ENSSVLG00005024740) AKAP17A (ENSSVLG00005024732) ASMT (ENSSVLG00005024679) DHRSX (ENSSVLG00005024652) ARSD (ENSSVLG00005024327) ARSL (ENSSVLG00005024133) ARSH (ENSSVLG00005024093) MXRA5 (ENSSVLG00005024063) PRKX (ENSSVLG00005024043) #20 ENSSVLG00005024020 #23 ENSSVLG00005023971 PUDP (ENSSVLG00005023945) STS (ENSSVLG00005023818) #26 PNPLA4 (ENSSVLG00005023753) #27 ENSSVLG00005023735 ENSSVLG00005023716 ANOS1 (ENSSVLG00005023647) ENSSVLG00005023601 #17 GPR143 (ENSSVLG00005023537) ENSSVLG00005023499 ENSSVLG00005023472 ENSSVLG00005023446 #18 ENSSVLG00005023419 #18 WWC3 (ENSSVLG00005023378) CLCN4 (ENSSVLG00005023297) Laurasiatheria ANCESTRAL SPECIES 83 ENSGT01030000235420 #21 ENSGT01050000244868.a.a.a.b.a.b.a.a.b #23 Laurasiatheria_a ANCESTRAL SPECIES 10 ENSGT00440000039314.a ENSGT00940000161561 ENSGT00940000162345 ENSGT00940000163186 ENSGT00940000164022 ENSGT00940000154344.b ENSGT00510000049811 ENSGT00940000161628 ENSGT00940000161140 ENSGT00940000163319 ENSGT00940000162925 ENSGT00940000163432 ENSGT00940000159942.a ENSGT00940000159832 #20 ENSGT01050000244868.a.a.a.b.a.b.a.a.a ##23 ENSGT01050000244868.a.a.a.b.a.b.a.a.b #23 ENSGT00940000156607.a.a ENSGT00390000014753 ENSGT00940000161153 #26 ENSGT00940000162022 #27 ENSGT00440000033720.a ENSGT00940000153421.a.a.a.a.b #17 ENSGT00390000016722 ENSGT00940000155212 ENSGT00390000005717 #18 ENSGT00520000056155 ENSGT00410000025556.a.b ENSGT00940000158265 ENSGT00940000155821 ENSGT00390000004175 ENSGT00940000153904.a Artiodactyla ANCESTRAL SPECIES 9 ENSGT00940000161561 ENSGT00940000164022 ENSGT00940000162345 ENSGT00940000163186 ENSGT00940000154344.b ENSGT00940000161628 ENSGT00940000161140 ENSGT00940000163319 ENSGT00940000162925 ENSGT00940000163432 ENSGT00940000159942.a ENSGT00940000159832 #20 ENSGT01050000244868.a.a.a.b.a.b.a.a.a.b ##23 ENSGT00940000170830 ENSGT01050000244868.a.a.a.b.a.b.a.a.a.a.b ##23 ENSGT01050000244868.a.a.a.b.a.b.a.a.b #23 ENSGT00940000156607.a.a ENSGT00390000014753 ENSGT00940000161153 #26 ENSGT00940000162022 #27 ENSGT00440000033720.a ENSGT00940000153421.a.a.a.a.b #17 ENSGT00390000016722 ENSGT00940000155212 ENSGT00390000005717 #18 ENSGT00410000025556.a.b ENSGT00940000158265 ENSGT00940000155821 ENSGT00390000004175 ENSGT00940000153904.a ENSGT00390000009151 Suina ANCESTRAL SPECIES 41 ENSGT00940000162345 ENSGT00940000163186 ENSGT00940000154344.b ENSGT00940000161628 ENSGT00940000161140 ENSGT00940000163319 ENSGT00940000163432 ENSGT00940000159942.a ENSGT00940000159832 #20 ENSGT01050000244868.a.a.a.b.a.b.a.a.a.b ##23 ENSGT00940000170830 ENSGT01050000244868.a.a.a.b.a.b.a.a.a.a.b ##23 ENSGT01050000244868.a.a.a.b.a.b.a.a.b #23 ENSGT00940000156607.a.a ENSGT00390000014753 ENSGT00940000161153 #26 ENSGT00940000162022 #27 ENSGT00440000033720.a ENSGT00940000153421.a.a.a.a.b #17 ENSGT00390000016722 ENSGT00940000155212 ENSGT00390000005717 #18 ENSGT00410000025556.a.b ENSGT00940000158265 ENSGT00940000155821 ENSGT00390000004175 ENSGT00940000153904.a ENSGT00390000009151 Chacoan peccary MODERN SPECIES 925 ENSCWAG00000006271 ZBED1 (ENSCWAG00000006257) CD99 (ENSCWAG00000006222) GYG2 (ENSCWAG00000006184) ARSD (ENSCWAG00000006137) ARSL (ENSCWAG00000006085) ARSF (ENSCWAG00000005528) MXRA5 (ENSCWAG00000005483) PRKX (ENSCWAG00000005455) #20 ENSCWAG00000005296 ##23 ENSCWAG00000005242 ##23 ENSCWAG00000005223 #23 ENSCWAG00000005129 PUDP (ENSCWAG00000005066) STS (ENSCWAG00000004943) #26 PNPLA4 (ENSCWAG00000004893) #27 ANOS1 (ENSCWAG00000004810) ENSCWAG00000004797 ENSCWAG00000004754 #17 GPR143 (ENSCWAG00000004631) ENSCWAG00000004537 Artiodactyla_a ANCESTRAL SPECIES 9 ENSGT00440000039314.a ENSGT00940000161561 ENSGT00940000162345 ENSGT00940000163186 ENSGT00940000154344.b ENSGT00510000049811 ENSGT00940000161628 ENSGT00940000161140 ENSGT00940000163319 ENSGT00940000162925 ENSGT00940000163432 ENSGT00940000159942.a ENSGT00940000159832 #20 ENSGT01050000244868.a.a.a.b.a.b.a.a.a.a.b ##23 ENSGT01030000235420 #21 ENSGT01050000244868.a.a.a.b.a.b.a.a.b #23 ENSGT00940000156607.a.a ENSGT00390000014753 ENSGT00940000161153 #26 ENSGT00940000162022 #27 ENSGT00440000033720.a ENSGT00940000153421.a.a.a.a.b #17 ENSGT00390000016722 ENSGT00940000155212 ENSGT00390000005717 #18 ENSGT00410000025556.a.b ENSGT00940000158265 ENSGT00940000155821 ENSGT00390000004175 ENSGT00940000153904.a ENSGT00390000009151 Camelidae ANCESTRAL SPECIES 59 ENSGT00520000055993.e ENSGT00520000055993.f ENSGT00940000163802 ENSGT00940000154622.b ENSGT00940000162413 ENSGT00440000039314.a ENSGT00940000161561 ENSGT00940000164022 ENSGT00510000049811 ENSGT00940000161628 ENSGT00940000161140 ENSGT00940000163319 ENSGT00940000163432 ENSGT00940000159942.a ENSGT00940000170830 ENSGT01050000244868.a.a.a.b.a.b.a.a.b #23 ENSGT00940000156607.a.a ENSGT00390000014753 ENSGT00940000161153 #26 ENSGT00940000162022 #27 ENSGT00440000033720.a ENSGT00940000153421.a.a.a.a.b #17 ENSGT00390000016722 ENSGT00940000155212 ENSGT00520000056155 ENSGT00410000025556.a.b ENSGT00940000158265 ENSGT00940000155821 ENSGT00390000004175 ENSGT00940000153904.a ENSGT00390000009151 Arabian camel MODERN SPECIES 204 ENSCDRG00005017286 ENSCDRG00005017309 ENSCDRG00005017377 ASMTL (ENSCDRG00005017407) AKAP17A (ENSCDRG00005017676) ASMT (ENSCDRG00005017704) ENSCDRG00005017803 XG (ENSCDRG00005017911) GYG2 (ENSCDRG00005018612) ARSD (ENSCDRG00005018666) ARSL (ENSCDRG00005018696) ARSF (ENSCDRG00005018790) MXRA5 (ENSCDRG00005018835) ENSCDRG00005018989 ENSCDRG00005019016 ENSCDRG00005019038 #23 ENSCDRG00005019077 ENSCDRG00005019099 PUDP (ENSCDRG00005019149) STS (ENSCDRG00005019178) #26 PNPLA4 (ENSCDRG00005019233) #27 ANOS1 (ENSCDRG00005019314) ENSCDRG00005019358 #17 GPR143 (ENSCDRG00005019461) ENSCDRG00005019562 ENSCDRG00005019574 WWC3 (ENSCDRG00005019584) CLCN4 (ENSCDRG00005019632) MID1 (ENSCDRG00005019668) HCCS (ENSCDRG00005019692) ARHGAP6 (ENSCDRG00005008483) Artiodactyla_b ANCESTRAL SPECIES 24 ENSGT01050000244840.B ENSGT00440000039314.a ENSGT00940000161561 ENSGT00940000162345 ENSGT00940000163186 ENSGT00940000154344.b ENSGT00510000049811 ENSGT00940000161628 ENSGT00940000161140 ENSGT00940000163319 ENSGT00940000162925 ENSGT00940000159942.a ENSGT00940000159832 #20 ENSGT01050000244868.a.a.a.b.a.b.a.a.a.a.b ##23 ENSGT01030000235420 #21 ENSGT01050000244868.a.a.a.b.a.b.a.a.b #23 ENSGT00940000156607.a.a ENSGT00390000014753 ENSGT00940000161153 #26 ENSGT00940000162022 #27 ENSGT00440000033720.a ENSGT00940000153421.a.a.a.a.b #17 ENSGT00390000016722 ENSGT00940000155212 ENSGT00390000005717 #18 ENSGT00410000025556.a.b ENSGT00940000158265 ENSGT00940000155821 ENSGT00390000004175 ENSGT00940000153904.a ENSGT00390000009151 Pecora DUPLICATION Pecora DUPLICATION Pecora ANCESTRAL SPECIES 34 ENSGT00940000154344.b ENSGT00510000049811 ENSGT00940000161628.d ENSGT00940000161140 ENSGT00940000163319 ENSGT00940000162925 ENSGT00940000159942.a ENSGT00940000159832 #20 ENSGT01050000244868.a.a.a.b.a.b.a.a.a.a.b.c.b ##23 ENSGT00940000170830 ENSGT01050000244868.a.a.a.b.a.b.a.a.a.a.b.c.a ##23 ENSGT01050000244868.a.a.a.b.a.b.a.a.a.a.a.a ##23 ENSGT01050000244868.a.a.a.b.a.b.a.a.a.a.a.b ##23 ENSGT01050000244868.a.a.a.b.a.b.a.a.b.a.b #23 ENSGT01030000235420 #21 ENSGT01050000244868.a.a.a.b.a.b.a.a.b.a.a #23 ENSGT01050000244868.a.a.a.b.a.b.a.a.b.b.a #23 ENSGT01050000244868.a.a.a.b.a.b.a.a.b.b.b #23 ENSGT00940000156607.a.a ENSGT00390000014753 ENSGT00940000161153 #26 ENSGT00940000162022 #27 ENSGT00440000033720.a ENSGT00940000153421.a.a.a.a.b #17 ENSGT00390000016722 ENSGT00940000155212 ENSGT00390000005717 #18 ENSGT00410000025556.a.b ENSGT00940000158265 ENSGT00940000155821 ENSGT00390000004175 Percora_a ANCESTRAL SPECIES 22 ENSGT00440000039314.a ENSGT00940000161561 ENSGT00940000162345 ENSGT00940000163186 ENSGT00940000154344.b ENSGT00510000049811 ENSGT00940000161628.d ENSGT00940000161140 ENSGT00940000163319 ENSGT00940000162925 ENSGT00940000159942.a ENSGT00940000159832 #20 ENSGT01050000244868.a.a.a.b.a.b.a.a.a.a.b.c.b ##23 ENSGT01050000244868.a.a.a.b.a.b.a.a.b.a.b #23 ENSGT01030000235420 #21 ENSGT01050000244868.a.a.a.b.a.b.a.a.b.a.a #23 ENSGT01050000244868.a.a.a.b.a.b.a.a.b.b.a.a.a #23 ENSGT01050000244868.a.a.a.b.a.b.a.a.b.b.a.b #23 ENSGT01050000244868.a.a.a.b.a.b.a.a.b.b.b #23 ENSGT00940000156607.a.a ENSGT00390000014753 ENSGT00940000161153 #26 ENSGT00940000162022 #27 ENSGT00440000033720.a ENSGT00940000153421.a.a.a.a.b #17 ENSGT00390000016722 ENSGT00940000155212 ENSGT00390000005717 #18 ENSGT00410000025556.a.b ENSGT00940000158265 ENSGT00940000155821 Bovidae ANCESTRAL SPECIES 23 ENSGT00940000162345 ENSGT00940000163186 ENSGT00940000154344.b ENSGT00510000049811 ENSGT00940000161628.d ENSGT00940000161140 ENSGT00940000163319 ENSGT00940000162925 ENSGT00940000159942.a ENSGT00940000159832 #20 ENSGT01050000244868.a.a.a.b.a.b.a.a.a.a.b.c.b ##23 ENSGT01050000244868.a.a.a.b.a.b.a.a.a.a.b.c.a ##23 ENSGT01050000244868.a.a.a.b.a.b.a.a.a.a.a.a ##23 ENSGT01050000244868.a.a.a.b.a.b.a.a.a.a.a.b ##23 ENSGT01050000244868.a.a.a.b.a.b.a.a.b.a.b #23 ENSGT01050000244868.a.a.a.b.a.b.a.a.b.a.a #23 ENSGT01030000235420.b #21 ENSGT01050000244868.a.a.a.b.a.b.a.a.b.b.a.b #23 ENSGT01050000244868.a.a.a.b.a.b.a.a.b.b.b #23 ENSGT00940000156607.a.a ENSGT00390000014753 ENSGT00940000161153 #26 ENSGT00940000162022 #27 ENSGT00440000033720.a ENSGT00940000153421.a.a.a.a.b #17 ENSGT00390000016722 ENSGT00940000155212 ENSGT00940000163405.h ENSGT00390000005717 #18 ENSGT00410000025556.a.b ENSGT00940000158265 Caprinae ANCESTRAL SPECIES 55 ENSGT00940000154344.b ENSGT00510000049811 ENSGT00940000161628.d ENSGT00940000161140 ENSGT00940000163319 ENSGT00940000162925 ENSGT00940000159942.a ENSGT00940000159832 #20 ENSGT01030000235420.a.b #21 ENSGT01050000244868.a.a.a.b.a.b.a.a.b.a.a #23 ENSGT01050000244868.a.a.a.b.a.b.a.a.b.b.a.a.a #23 ENSGT01050000244868.a.a.a.b.a.b.a.a.b.b.a.b #23 ENSGT01050000244868.a.a.a.b.a.b.a.a.b.b.b #23 ENSGT00940000156607.a.a ENSGT00390000014753 ENSGT00940000161153 #26 ENSGT00940000162022 #27 ENSGT00440000033720.a Goat MODERN SPECIES 29 GYG2 (ENSCHIG00000014428) ARSD (ENSCHIG00000021705) ARSL (ENSCHIG00000020287) ARSH (ENSCHIG00000021448) MXRA5 (ENSCHIG00000018886) PRKX (ENSCHIG00000019219) #20 ENSCHIG00000017435 ENSCHIG00000013339 ENSCHIG00000020209 ##23 ENSCHIG00000003237 ENSCHIG00000016125 ##23 ENSCHIG00000024801 ##23 ENSCHIG00000015463 ENSCHIG00000024604 ENSCHIG00000016088 #23 ENSCHIG00000024935 #23 ENSCHIG00000014346 #23 ENSCHIG00000022295 #23 ENSCHIG00000018257 #23 ENSCHIG00000007638 PUDP (ENSCHIG00000022092) STS (ENSCHIG00000017504) #26 PNPLA4 (ENSCHIG00000013510) #27 ANOS1 (ENSCHIG00000022772) SHROOM2 (ENSCHIG00000020188) GPR143 (ENSCHIG00000016990) ENSCHIG00000008291 #17 MID1 (ENSCHIG00000012678) ENSCHIG00000006968 HCCS (ENSCHIG00000021236) ENSCHIG00000017454 Rambouillet Sheep MODERN SPECIES 205 ASMT (ENSOARG00020021300) AKAP17A (ENSOARG00020021337) CRLF2 (ENSOARG00020021524) ARSH (ENSOARG00020021899) ENSOARG00020022007 ENSOARG00020022017 ##23 ENSOARG00020022041 ENSOARG00020022057 ENSOARG00020022131 ##23 ENSOARG00020022180 ##23 ENSOARG00020022239 #21 ENSOARG00020022266 #21 ENSOARG00020022326 #23 ENSOARG00020022337 #23 ENSOARG00020022367 #21 ENSOARG00020022408 #23 ENSOARG00020022535 PUDP (ENSOARG00020022646) STS (ENSOARG00020022693) #26 ENSOARG00020022730 PNPLA4 (ENSOARG00020022744) #27 ANOS1 (ENSOARG00020022822) ENSOARG00020023008 #17 ENSOARG00020023111 ENSOARG00020023132 ENSOARG00020023143 ENSOARG00020023171 ENSOARG00020023199 Bovinae ANCESTRAL SPECIES 32 ENSGT00940000162345 ENSGT00940000163186 ENSGT00940000154344.b ENSGT00510000049811 ENSGT00940000161628.d ENSGT00940000161140 ENSGT00940000163319 ENSGT00940000162925 ENSGT00940000159942.a ENSGT00940000159832 #20 ENSGT01050000244868.a.a.a.b.a.b.a.a.a.a.b.c.b ##23 ENSGT01050000244868.a.a.a.b.a.b.a.a.a.a.b.c.a ##23 ENSGT01050000244868.a.a.a.b.a.b.a.a.a.a.a.a ##23 ENSGT01050000244868.a.a.a.b.a.b.a.a.a.a.a.b ##23 ENSGT01050000244868.a.a.a.b.a.b.a.a.b.a.b #23 ENSGT01050000244868.a.a.a.b.a.b.a.a.b.a.a #23 ENSGT01030000235420.b #21 ENSGT01050000244868.a.a.a.b.a.b.a.a.b.b.a.b #23 ENSGT01050000244868.a.a.a.b.a.b.a.a.b.b.b #23 ENSGT00940000156607.a.a ENSGT00390000014753 ENSGT00940000161153 #26 ENSGT00940000162022 #27 ENSGT00440000033720.a ENSGT00940000153421.a.a.a.a.b #17 ENSGT00390000016722 ENSGT00940000155212 ENSGT00960000190178 ENSGT00410000025556.a.b ENSGT00940000158265 ENSGT00940000155821 Bos ANCESTRAL SPECIES 32 ENSGT00940000163186 ENSGT00940000154344.b ENSGT00510000049811 ENSGT00940000161628.d ENSGT00940000161140 ENSGT00940000163319 ENSGT00940000162925 ENSGT00940000159942.a ENSGT00940000159832 #20 ENSGT01050000244868.a.a.a.b.a.b.a.a.a.a.b.c.b ##23 ENSGT01050000244868.a.a.a.b.a.b.a.a.a.a.b.c.a ##23 ENSGT01050000244868.a.a.a.b.a.b.a.a.a.a.a.a ##23 ENSGT01050000244868.a.a.a.b.a.b.a.a.a.a.a.b.d ##23 ENSGT01030000235420.a.a #21 ENSGT01050000244868.a.a.a.b.a.b.a.a.b.a.b #23 ENSGT01050000244868.a.a.a.b.a.b.a.a.b.a.a #23 ENSGT01030000235420.b #21 ENSGT01050000244868.a.a.a.b.a.b.a.a.b.b.a.b #23 ENSGT01050000244868.a.a.a.b.a.b.a.a.b.b.b #23 ENSGT00940000156607.a.a ENSGT00390000014753 ENSGT00940000161153 #26 ENSGT00940000162022 #27 ENSGT00440000033720.a ENSGT00940000153421.a.a.a.a.b #17 ENSGT00390000016722 ENSGT00940000155212 ENSGT00960000190178 ENSGT00980000198921.a.a ENSGT00410000025556.a.b ENSGT00940000158265 Bos_a ANCESTRAL SPECIES 78 ENSGT01050000244840.B ENSGT00440000039314.a ENSGT00940000161561 ENSGT00940000162345 ENSGT00940000163186 ENSGT00940000154344.b ENSGT00510000049811 ENSGT00940000161628.d ENSGT00940000161140 ENSGT00940000163319 ENSGT00940000162925 ENSGT00940000159832 #20 ENSGT01050000244868.a.a.a.b.a.b.a.a.a.a.b.c.b ##23 ENSGT01050000244868.a.a.a.b.a.b.a.a.a.a.a.b.c ##23 ENSGT01050000244868.a.a.a.b.a.b.a.a.b.a.b #23 ENSGT01050000244868.a.a.a.b.a.b.a.a.b.a.a #23 ENSGT01030000235420.b #21 ENSGT01050000244868.a.a.a.b.a.b.a.a.b.b.a.b #23 ENSGT00940000156607.a.a ENSGT00390000014753 ENSGT00940000161153 #26 ENSGT00940000162022 #27 ENSGT00440000033720.a Domestic yak MODERN SPECIES 70 ENSBGRG00000007226 SLC25A6 (ENSBGRG00000007164) ASMTL (ENSBGRG00000007075) P2RY8 (ENSBGRG00000019508) AKAP17A (ENSBGRG00000019461) ASMT (ENSBGRG00000019382) DHRSX (ENSBGRG00000019175) CD99 (ENSBGRG00000019127) ENSBGRG00000019017 ENSBGRG00000018981 ENSBGRG00000018584 PRKX (ENSBGRG00000018435) #20 ENSBGRG00000018380 ##23 ENSBGRG00000018343 ##23 ENSBGRG00000018304 #23 ENSBGRG00000018225 #23 ENSBGRG00000018138 #21 ENSBGRG00000017967 #23 ENSBGRG00000017805 ENSBGRG00000017714 STS (ENSBGRG00000017387) #26 PNPLA4 (ENSBGRG00000017194) #27 ANOS1 (ENSBGRG00000016848) ENSBGRG00000016770 ENSBGRG00000016329 ENSBGRG00000016296 ENSBGRG00000016206 ENSBGRG00000016180 ENSBGRG00000016112 USP9Y (ENSBGRG00000015615) ENSBGRG00000015085 Bos_b ANCESTRAL SPECIES 39 ENSGT00940000162345 ENSGT00940000163186 ENSGT00940000154344.b ENSGT00510000049811 ENSGT00940000161628.d ENSGT00940000161140 ENSGT00940000163319 ENSGT00940000162925 ENSGT00940000159942.a ENSGT00940000159832 #20 ENSGT01050000244868.a.a.a.b.a.b.a.a.a.a.b.c.b ##23 ENSGT01050000244868.a.a.a.b.a.b.a.a.a.a.b.c.a ##23 ENSGT01050000244868.a.a.a.b.a.b.a.a.a.a.a.a ##23 ENSGT01050000244868.a.a.a.b.a.b.a.a.a.a.a.b.d ##23 ENSGT01050000244868.a.a.a.b.a.b.a.a.b.a.b #23 ENSGT01050000244868.a.a.a.b.a.b.a.a.b.a.a #23 ENSGT01030000235420.b #21 ENSGT01050000244868.a.a.a.b.a.b.a.a.b.b.a.b #23 ENSGT01050000244868.a.a.a.b.a.b.a.a.b.b.b #23 ENSGT00940000156607.a.a ENSGT00390000014753 ENSGT00940000161153 #26 ENSGT00940000162022 #27 ENSGT00440000033720.a ENSGT00940000153421.a.a.a.a.b #17 ENSGT00390000016722 ENSGT00940000155212 ENSGT00960000190178 ENSGT00980000198921.a.a ENSGT00410000025556.a.b ENSGT00940000158265 Hybrid Bos Indicus MODERN SPECIES 315 CD99 (ENSBIXG00005011911) XG (ENSBIXG00005011896) ENSBIXG00005005957 ARSD (ENSBIXG00005011859) ARSL (ENSBIXG00005006788) ARSH (ENSBIXG00005011774) MXRA5 (ENSBIXG00005011740) ENSBIXG00005011717 PRKX (ENSBIXG00005011708) #20 ENSBIXG00005011658 ##23 ENSBIXG00005001147 ##23 ENSBIXG00005011615 ##23 ENSBIXG00005001130 ##23 ENSBIXG00005000452 #21 ENSBIXG00005011496 #23 ENSBIXG00005011472 #23 ENSBIXG00005011448 #23 ENSBIXG00005011425 #21 ENSBIXG00005011409 #23 ENSBIXG00005001083 ENSBIXG00005011152 STS (ENSBIXG00005011080) #26 PNPLA4 (ENSBIXG00005011002) #27 ANOS1 (ENSBIXG00005010908) ENSBIXG00005010818 #17 GPR143 (ENSBIXG00005010743) SHROOM2 (ENSBIXG00005000636) ENSBIXG00005010661 ENSBIXG00005010650 ENSBIXG00005010631 ENSBIXG00005010460 Cow MODERN SPECIES 177 ENSBTAG00000049411 CD99 (ENSBTAG00000008114) XG (ENSBTAG00000046328) GYG2 (ENSBTAG00000013341) ARSD (ENSBTAG00000051224) ARSL (ENSBTAG00000014932) ARSH (ENSBTAG00000047161) MXRA5 (ENSBTAG00000022150) PRKX (ENSBTAG00000014367) #20 ENSBTAG00000016989 ##23 ENSBTAG00000025951 ##23 ENSBTAG00000025952 ##23 ENSBTAG00000052075 ##23 ENSBTAG00000049442 ##23 ENSBTAG00000053270 #23 ENSBTAG00000012491 #23 BDA20 (ENSBTAG00000016820) #23 MGC151921 (ENSBTAG00000046084) #23 ENSBTAG00000027841 PUDP (ENSBTAG00000000207) STS (ENSBTAG00000020789) #26 PNPLA4 (ENSBTAG00000015849) #27 ANOS1 (ENSBTAG00000001049) TBL1X (ENSBTAG00000018112) #17 GPR143 (ENSBTAG00000006472) ENSBTAG00000051024 SHROOM2 (ENSBTAG00000000211) ENSBTAG00000002158 ENSBTAG00000047068 ENSBTAG00000053828 CLDN34 (ENSBTAG00000046366) #18 American bison MODERN SPECIES 2014 ENSBBBG00000017848 #23 ENSBBBG00000008775 #21 Yarkand deer MODERN SPECIES 1323 ARSD (ENSCHYG00000010347) ARSL (ENSCHYG00000010085) ARSH (ENSCHYG00000009968) MXRA5 (ENSCHYG00000009801) PRKX (ENSCHYG00000009716) #20 ENSCHYG00000009664 ENSCHYG00000009614 ENSCHYG00000009561 ENSCHYG00000009523 ##23 ENSCHYG00000009399 ##23 ENSCHYG00000009306 ##23 ENSCHYG00000009205 ##23 ENSCHYG00000009108 ##23 ENSCHYG00000009073 #23 ENSCHYG00000008821 #23 ENSCHYG00000026359 ENSCHYG00000026346 ENSCHYG00000026317 PUDP (ENSCHYG00000026267) STS (ENSCHYG00000026228) #26 PNPLA4 (ENSCHYG00000026179) #27 ANOS1 (ENSCHYG00000026105) ENSCHYG00000026081 #17 ENSCHYG00000026062 #17 ENSCHYG00000026051 USP9Y (ENSCHYG00000026024) ENSCHYG00000026010 UTY (ENSCHYG00000025844) ENSCHYG00000025789 Pecora ANCESTRAL SPECIES 34 ENSGT00940000162345 ENSGT00940000163186 ENSGT00940000154344.b ENSGT00510000049811 ENSGT00940000161628.d ENSGT00940000161140 ENSGT00940000163319 ENSGT00940000162925 ENSGT00940000159942.a ENSGT00940000159832 #20 ENSGT01050000244868.a.a.a.b.a.b.a.a.a.a.b.c.b ##23 ENSGT00940000170830 ENSGT01050000244868.a.a.a.b.a.b.a.a.a.a.b.c.a ##23 ENSGT01050000244868.a.a.a.b.a.b.a.a.a.a.a.a ##23 ENSGT01050000244868.a.a.a.b.a.b.a.a.a.a.a.b ##23 ENSGT01050000244868.a.a.a.b.a.b.a.a.b.a.b #23 ENSGT01030000235420 #21 ENSGT01050000244868.a.a.a.b.a.b.a.a.b.a.a #23 ENSGT01050000244868.a.a.a.b.a.b.a.a.b.b.a #23 ENSGT01050000244868.a.a.a.b.a.b.a.a.b.b.b #23 ENSGT00940000156607.a.a ENSGT00390000014753 ENSGT00940000161153 #26 ENSGT00940000162022 #27 ENSGT00440000033720.a ENSGT00940000153421.a.a.a.a.b #17 ENSGT00390000016722 ENSGT00940000155212 ENSGT00390000005717 #18 ENSGT00410000025556.a.b ENSGT00940000158265 Percora_a ANCESTRAL SPECIES 22 ENSGT00940000162413 ENSGT01050000244840.B ENSGT00440000039314.a ENSGT00940000161561 ENSGT00940000162345 ENSGT00940000163186 ENSGT00940000154344.b ENSGT00510000049811 ENSGT00940000161628.d ENSGT00940000161140 ENSGT00940000163319 ENSGT00940000162925 ENSGT00940000159942.a ENSGT00940000159832 #20 ENSGT01050000244868.a.a.a.b.a.b.a.a.a.a.b.c.b ##23 ENSGT01050000244868.a.a.a.b.a.b.a.a.b.a.b #23 ENSGT01030000235420 #21 ENSGT01050000244868.a.a.a.b.a.b.a.a.b.a.a #23 ENSGT01050000244868.a.a.a.b.a.b.a.a.b.b.a.a.a #23 ENSGT01050000244868.a.a.a.b.a.b.a.a.b.b.a.b #23 ENSGT01050000244868.a.a.a.b.a.b.a.a.b.b.b #23 ENSGT00940000156607.a.a ENSGT00390000014753 ENSGT00940000161153 #26 ENSGT00940000162022 #27 ENSGT00440000033720.a ENSGT00940000153421.a.a.a.a.b #17 ENSGT00390000016722 ENSGT00940000155212 ENSGT00390000005717 #18 ENSGT00410000025556.a.b Bovidae ANCESTRAL SPECIES 23 ENSGT00940000161561 ENSGT00940000162345 ENSGT00940000163186 ENSGT00940000154344.b ENSGT00510000049811 ENSGT00940000161628.d ENSGT00940000161140 ENSGT00940000163319 ENSGT00940000162925 ENSGT00940000159942.a ENSGT00940000159832 #20 ENSGT01050000244868.a.a.a.b.a.b.a.a.a.a.b.c.b ##23 ENSGT01050000244868.a.a.a.b.a.b.a.a.a.a.b.c.a ##23 ENSGT01050000244868.a.a.a.b.a.b.a.a.a.a.a.a ##23 ENSGT01050000244868.a.a.a.b.a.b.a.a.a.a.a.b ##23 ENSGT01050000244868.a.a.a.b.a.b.a.a.b.a.b #23 ENSGT01050000244868.a.a.a.b.a.b.a.a.b.a.a #23 ENSGT01030000235420.b #21 ENSGT01050000244868.a.a.a.b.a.b.a.a.b.b.a.b #23 ENSGT01050000244868.a.a.a.b.a.b.a.a.b.b.b #23 ENSGT00940000156607.a.a ENSGT00390000014753 ENSGT00940000161153 #26 ENSGT00940000162022 #27 ENSGT00440000033720.a ENSGT00940000153421.a.a.a.a.b #17 ENSGT00390000016722 ENSGT00940000155212 ENSGT00940000163405.h ENSGT00390000005717 #18 ENSGT00410000025556.a.b Bovinae ANCESTRAL SPECIES 32 ENSGT00940000161561 ENSGT00940000162345 ENSGT00940000163186 ENSGT00940000154344.b ENSGT00510000049811 ENSGT00940000161628.d ENSGT00940000161140 ENSGT00940000163319 ENSGT00940000162925 ENSGT00940000159942.a ENSGT00940000159832 #20 ENSGT01050000244868.a.a.a.b.a.b.a.a.a.a.b.c.b ##23 ENSGT01050000244868.a.a.a.b.a.b.a.a.a.a.b.c.a ##23 ENSGT01050000244868.a.a.a.b.a.b.a.a.a.a.a.a ##23 ENSGT01050000244868.a.a.a.b.a.b.a.a.a.a.a.b ##23 ENSGT01050000244868.a.a.a.b.a.b.a.a.b.a.b #23 ENSGT01050000244868.a.a.a.b.a.b.a.a.b.a.a #23 ENSGT01030000235420.b #21 ENSGT01050000244868.a.a.a.b.a.b.a.a.b.b.a.b #23 ENSGT01050000244868.a.a.a.b.a.b.a.a.b.b.b #23 ENSGT00940000156607.a.a ENSGT00390000014753 ENSGT00940000161153 #26 ENSGT00940000162022 #27 ENSGT00440000033720.a ENSGT00940000153421.a.a.a.a.b #17 ENSGT00390000016722 ENSGT00940000155212 ENSGT00960000190178 ENSGT00410000025556.a.b ENSGT00940000158265 Bos ANCESTRAL SPECIES 32 ENSGT00940000162345 ENSGT00940000163186 ENSGT00940000154344.b ENSGT00510000049811 ENSGT00940000161628.d ENSGT00940000161140 ENSGT00940000163319 ENSGT00940000162925 ENSGT00940000159942.a ENSGT00940000159832 #20 ENSGT01050000244868.a.a.a.b.a.b.a.a.a.a.b.c.b ##23 ENSGT01050000244868.a.a.a.b.a.b.a.a.a.a.b.c.a ##23 ENSGT01050000244868.a.a.a.b.a.b.a.a.a.a.a.a ##23 ENSGT01050000244868.a.a.a.b.a.b.a.a.a.a.a.b.d ##23 ENSGT01030000235420.a.a #21 ENSGT01050000244868.a.a.a.b.a.b.a.a.b.a.b #23 ENSGT01050000244868.a.a.a.b.a.b.a.a.b.a.a #23 ENSGT01030000235420.b #21 ENSGT01050000244868.a.a.a.b.a.b.a.a.b.b.a.b #23 ENSGT01050000244868.a.a.a.b.a.b.a.a.b.b.b #23 ENSGT00940000156607.a.a ENSGT00390000014753 ENSGT00940000161153 #26 ENSGT00940000162022 #27 ENSGT00440000033720.a ENSGT00940000153421.a.a.a.a.b #17 ENSGT00390000016722 ENSGT00940000155212 ENSGT00960000190178 ENSGT00980000198921.a.a ENSGT00410000025556.a.b Bos_b ANCESTRAL SPECIES 39 ENSGT00940000161561 ENSGT00940000162345 ENSGT00940000163186 ENSGT00940000154344.b ENSGT00510000049811 ENSGT00940000161628.d ENSGT00940000161140 ENSGT00940000163319 ENSGT00940000162925 ENSGT00940000159942.a ENSGT00940000159832 #20 ENSGT01050000244868.a.a.a.b.a.b.a.a.a.a.b.c.b ##23 ENSGT01050000244868.a.a.a.b.a.b.a.a.a.a.b.c.a ##23 ENSGT01050000244868.a.a.a.b.a.b.a.a.a.a.a.a ##23 ENSGT01050000244868.a.a.a.b.a.b.a.a.a.a.a.b.d ##23 ENSGT01050000244868.a.a.a.b.a.b.a.a.b.a.b #23 ENSGT01050000244868.a.a.a.b.a.b.a.a.b.a.a #23 ENSGT01030000235420.b #21 ENSGT01050000244868.a.a.a.b.a.b.a.a.b.b.a.b #23 ENSGT01050000244868.a.a.a.b.a.b.a.a.b.b.b #23 ENSGT00940000156607.a.a ENSGT00390000014753 ENSGT00940000161153 #26 ENSGT00940000162022 #27 ENSGT00440000033720.a ENSGT00940000153421.a.a.a.a.b #17 ENSGT00390000016722 ENSGT00940000155212 ENSGT00960000190178 ENSGT00980000198921.a.a ENSGT00410000025556.a.b Hybrid Bos Indicus MODERN SPECIES 315 ZBED1 (ENSBIXG00005011947) CD99 (ENSBIXG00005011911) XG (ENSBIXG00005011896) ENSBIXG00005005957 ARSD (ENSBIXG00005011859) ARSL (ENSBIXG00005006788) ARSH (ENSBIXG00005011774) MXRA5 (ENSBIXG00005011740) ENSBIXG00005011717 PRKX (ENSBIXG00005011708) #20 ENSBIXG00005011658 ##23 ENSBIXG00005001147 ##23 ENSBIXG00005011615 ##23 ENSBIXG00005001130 ##23 ENSBIXG00005000452 #21 ENSBIXG00005011496 #23 ENSBIXG00005011472 #23 ENSBIXG00005011448 #23 ENSBIXG00005011425 #21 ENSBIXG00005011409 #23 ENSBIXG00005001083 ENSBIXG00005011152 STS (ENSBIXG00005011080) #26 PNPLA4 (ENSBIXG00005011002) #27 ANOS1 (ENSBIXG00005010908) ENSBIXG00005010818 #17 GPR143 (ENSBIXG00005010743) SHROOM2 (ENSBIXG00005000636) ENSBIXG00005010661 ENSBIXG00005010650 ENSBIXG00005010631 Cow MODERN SPECIES 177 ENSBTAG00000049411 CD99 (ENSBTAG00000008114) XG (ENSBTAG00000046328) GYG2 (ENSBTAG00000013341) ARSD (ENSBTAG00000051224) ARSL (ENSBTAG00000014932) ARSH (ENSBTAG00000047161) MXRA5 (ENSBTAG00000022150) PRKX (ENSBTAG00000014367) #20 ENSBTAG00000016989 ##23 ENSBTAG00000025951 ##23 ENSBTAG00000025952 ##23 ENSBTAG00000052075 ##23 ENSBTAG00000049442 ##23 ENSBTAG00000053270 #23 ENSBTAG00000012491 #23 BDA20 (ENSBTAG00000016820) #23 MGC151921 (ENSBTAG00000046084) #23 ENSBTAG00000027841 PUDP (ENSBTAG00000000207) STS (ENSBTAG00000020789) #26 PNPLA4 (ENSBTAG00000015849) #27 ANOS1 (ENSBTAG00000001049) TBL1X (ENSBTAG00000018112) #17 GPR143 (ENSBTAG00000006472) ENSBTAG00000051024 SHROOM2 (ENSBTAG00000000211) ENSBTAG00000002158 ENSBTAG00000047068 ENSBTAG00000053828 Bos_a ANCESTRAL SPECIES 78 ENSGT00940000162413 ENSGT01050000244840.B ENSGT00440000039314.a ENSGT00940000161561 ENSGT00940000162345 ENSGT00940000163186 ENSGT00940000154344.b ENSGT00510000049811 ENSGT00940000161628.d ENSGT00940000161140 ENSGT00940000163319 ENSGT00940000162925 ENSGT00940000159832 #20 ENSGT01050000244868.a.a.a.b.a.b.a.a.a.a.b.c.b ##23 ENSGT01050000244868.a.a.a.b.a.b.a.a.a.a.a.b.c ##23 ENSGT01050000244868.a.a.a.b.a.b.a.a.b.a.b #23 ENSGT01050000244868.a.a.a.b.a.b.a.a.b.a.a #23 ENSGT01030000235420.b #21 ENSGT01050000244868.a.a.a.b.a.b.a.a.b.b.a.b #23 ENSGT00940000156607.a.a ENSGT00390000014753 ENSGT00940000161153 #26 ENSGT00940000162022 #27 ENSGT00440000033720.a Domestic yak MODERN SPECIES 70 ENSBGRG00000007304 ENSBGRG00000007226 SLC25A6 (ENSBGRG00000007164) ASMTL (ENSBGRG00000007075) P2RY8 (ENSBGRG00000019508) AKAP17A (ENSBGRG00000019461) ASMT (ENSBGRG00000019382) DHRSX (ENSBGRG00000019175) CD99 (ENSBGRG00000019127) ENSBGRG00000019017 ENSBGRG00000018981 ENSBGRG00000018584 PRKX (ENSBGRG00000018435) #20 ENSBGRG00000018380 ##23 ENSBGRG00000018343 ##23 ENSBGRG00000018304 #23 ENSBGRG00000018225 #23 ENSBGRG00000018138 #21 ENSBGRG00000017967 #23 ENSBGRG00000017805 ENSBGRG00000017714 STS (ENSBGRG00000017387) #26 PNPLA4 (ENSBGRG00000017194) #27 ANOS1 (ENSBGRG00000016848) ENSBGRG00000016770 ENSBGRG00000016329 ENSBGRG00000016296 ENSBGRG00000016206 ENSBGRG00000016180 ENSBGRG00000016112 USP9Y (ENSBGRG00000015615) Wild yak MODERN SPECIES 738 ENSBMUG00000004251 #21 ENSBMUG00000004237 #23 ENSBMUG00000004208 #21 ENSBMUG00000004190 #23 ENSBMUG00000004179 #23 American bison MODERN SPECIES 1798 ENSBBBG00000021497 #23 Caprinae ANCESTRAL SPECIES 98 ENSGT01050000244868.a.a.a.b.a.b.a.a.a.a.a.b ##23 ENSGT00940000170830 ENSGT01050000244868.a.a.a.b.a.b.a.a.b.a.b #23 Goat MODERN SPECIES 29 XG (ENSCHIG00000020586) GYG2 (ENSCHIG00000014428) ARSD (ENSCHIG00000021705) ARSL (ENSCHIG00000020287) ARSH (ENSCHIG00000021448) MXRA5 (ENSCHIG00000018886) PRKX (ENSCHIG00000019219) #20 ENSCHIG00000017435 ENSCHIG00000013339 ENSCHIG00000020209 ##23 ENSCHIG00000003237 ENSCHIG00000016125 ##23 ENSCHIG00000024801 ##23 ENSCHIG00000015463 ENSCHIG00000024604 ENSCHIG00000016088 #23 ENSCHIG00000024935 #23 ENSCHIG00000014346 #23 ENSCHIG00000022295 #23 ENSCHIG00000018257 #23 ENSCHIG00000007638 PUDP (ENSCHIG00000022092) STS (ENSCHIG00000017504) #26 PNPLA4 (ENSCHIG00000013510) #27 ANOS1 (ENSCHIG00000022772) SHROOM2 (ENSCHIG00000020188) GPR143 (ENSCHIG00000016990) ENSCHIG00000008291 #17 MID1 (ENSCHIG00000012678) ENSCHIG00000006968 HCCS (ENSCHIG00000021236) Siberian musk deer MODERN SPECIES 1139 ENSMMSG00000018927 CD99 (ENSMMSG00000018962) XG (ENSMMSG00000018993) GYG2 (ENSMMSG00000019089) ARSD (ENSMMSG00000019222) ARSL (ENSMMSG00000019269) ARSH (ENSMMSG00000019359) MXRA5 (ENSMMSG00000019412) PRKX (ENSMMSG00000019432) #20 ENSMMSG00000019496 ##23 ENSMMSG00000019635 ##23 ENSMMSG00000019691 ##23 ENSMMSG00000019737 ##23 ENSMMSG00000019770 ##23 ENSMMSG00000019844 #23 ENSMMSG00000019868 #23 ENSMMSG00000019885 #23 ENSMMSG00000019929 #23 ENSMMSG00000019937 #23 ENSMMSG00000019959 #23 ENSMMSG00000019977 Yarkand deer DUPLICATION Yarkand deer MODERN SPECIES 856 ENSCHYG00000018194 #23 Yarkand deer MODERN SPECIES 855 ENSCHYG00000018158 #23 Pecora DUPLICATION Pecora ANCESTRAL SPECIES 34 ENSGT00510000049811 ENSGT00940000161628.d ENSGT00940000161140 ENSGT00940000163319 ENSGT00940000162925 ENSGT00940000159942.a ENSGT00940000159832 #20 ENSGT01050000244868.a.a.a.b.a.b.a.a.a.a.b.c.b ##23 ENSGT00940000170830 ENSGT01050000244868.a.a.a.b.a.b.a.a.a.a.b.c.a ##23 ENSGT01050000244868.a.a.a.b.a.b.a.a.a.a.a.a ##23 ENSGT01050000244868.a.a.a.b.a.b.a.a.a.a.a.b ##23 ENSGT01050000244868.a.a.a.b.a.b.a.a.b.a.b #23 ENSGT01030000235420 #21 ENSGT01050000244868.a.a.a.b.a.b.a.a.b.a.a #23 ENSGT01050000244868.a.a.a.b.a.b.a.a.b.b.a #23 ENSGT01050000244868.a.a.a.b.a.b.a.a.b.b.b #23 ENSGT00940000156607.a.a ENSGT00390000014753 ENSGT00940000161153 #26 ENSGT00940000162022 #27 ENSGT00440000033720.a ENSGT00940000153421.a.a.a.a.b #17 ENSGT00390000016722 ENSGT00940000155212 ENSGT00390000005717 #18 ENSGT00410000025556.a.b ENSGT00940000158265 ENSGT00940000155821 ENSGT00390000004175 ENSGT00940000153904.a Yarkand deer MODERN SPECIES 1323 ARSD (ENSCHYG00000010347) ARSL (ENSCHYG00000010085) ARSH (ENSCHYG00000009968) MXRA5 (ENSCHYG00000009801) PRKX (ENSCHYG00000009716) #20 ENSCHYG00000009664 ENSCHYG00000009614 ENSCHYG00000009561 ENSCHYG00000009523 ##23 ENSCHYG00000009399 ##23 ENSCHYG00000009306 ##23 ENSCHYG00000009205 ##23 ENSCHYG00000009108 ##23 ENSCHYG00000009073 #23 ENSCHYG00000008821 #23 ENSCHYG00000026359 ENSCHYG00000026346 ENSCHYG00000026317 PUDP (ENSCHYG00000026267) STS (ENSCHYG00000026228) #26 PNPLA4 (ENSCHYG00000026179) #27 ANOS1 (ENSCHYG00000026105) ENSCHYG00000026081 #17 ENSCHYG00000026062 #17 ENSCHYG00000026051 USP9Y (ENSCHYG00000026024) ENSCHYG00000026010 UTY (ENSCHYG00000025844) ENSCHYG00000025789 ENSCHYG00000025773 Percora_a DUPLICATION Percora_a DUPLICATION Percora_a ANCESTRAL SPECIES 22 ENSGT00940000161561 ENSGT00940000162345 ENSGT00940000163186 ENSGT00940000154344.b ENSGT00510000049811 ENSGT00940000161628.d ENSGT00940000161140 ENSGT00940000163319 ENSGT00940000162925 ENSGT00940000159942.a ENSGT00940000159832 #20 ENSGT01050000244868.a.a.a.b.a.b.a.a.a.a.b.c.b ##23 ENSGT01050000244868.a.a.a.b.a.b.a.a.b.a.b #23 ENSGT01030000235420 #21 ENSGT01050000244868.a.a.a.b.a.b.a.a.b.a.a #23 ENSGT01050000244868.a.a.a.b.a.b.a.a.b.b.a.a.a #23 ENSGT01050000244868.a.a.a.b.a.b.a.a.b.b.a.b #23 ENSGT01050000244868.a.a.a.b.a.b.a.a.b.b.b #23 ENSGT00940000156607.a.a ENSGT00390000014753 ENSGT00940000161153 #26 ENSGT00940000162022 #27 ENSGT00440000033720.a ENSGT00940000153421.a.a.a.a.b #17 ENSGT00390000016722 ENSGT00940000155212 ENSGT00390000005717 #18 ENSGT00410000025556.a.b ENSGT00940000158265 ENSGT00940000155821 ENSGT00390000004175 Bovidae ANCESTRAL SPECIES ENSGT01050000244868.a.a.a.b.a.b.a.a.b.b.a.a.a #23 Caprinae ANCESTRAL SPECIES 55 ENSGT00940000154344.b ENSGT00510000049811 ENSGT00940000161628.d ENSGT00940000161140 ENSGT00940000163319 ENSGT00940000162925 ENSGT00940000159942.a ENSGT00940000159832 #20 ENSGT01030000235420.a.b #21 ENSGT01050000244868.a.a.a.b.a.b.a.a.b.a.a #23 ENSGT01050000244868.a.a.a.b.a.b.a.a.b.b.a.a.a #23 ENSGT01050000244868.a.a.a.b.a.b.a.a.b.b.a.b #23 ENSGT01050000244868.a.a.a.b.a.b.a.a.b.b.b #23 ENSGT00940000156607.a.a ENSGT00390000014753 ENSGT00940000161153 #26 ENSGT00940000162022 #27 ENSGT00440000033720.a Goat MODERN SPECIES 29 ARSD (ENSCHIG00000021705) ARSL (ENSCHIG00000020287) ARSH (ENSCHIG00000021448) MXRA5 (ENSCHIG00000018886) PRKX (ENSCHIG00000019219) #20 ENSCHIG00000017435 ENSCHIG00000013339 ENSCHIG00000020209 ##23 ENSCHIG00000003237 ENSCHIG00000016125 ##23 ENSCHIG00000024801 ##23 ENSCHIG00000015463 ENSCHIG00000024604 ENSCHIG00000016088 #23 ENSCHIG00000024935 #23 ENSCHIG00000014346 #23 ENSCHIG00000022295 #23 ENSCHIG00000018257 #23 ENSCHIG00000007638 PUDP (ENSCHIG00000022092) STS (ENSCHIG00000017504) #26 PNPLA4 (ENSCHIG00000013510) #27 ANOS1 (ENSCHIG00000022772) SHROOM2 (ENSCHIG00000020188) GPR143 (ENSCHIG00000016990) ENSCHIG00000008291 #17 MID1 (ENSCHIG00000012678) ENSCHIG00000006968 HCCS (ENSCHIG00000021236) ENSCHIG00000017454 ARHGAP6 (ENSCHIG00000022831) Rambouillet Sheep MODERN SPECIES 205 ASMT (ENSOARG00020021300) AKAP17A (ENSOARG00020021337) CRLF2 (ENSOARG00020021524) ARSH (ENSOARG00020021899) ENSOARG00020022007 ENSOARG00020022017 ##23 ENSOARG00020022041 ENSOARG00020022057 ENSOARG00020022131 ##23 ENSOARG00020022180 ##23 ENSOARG00020022239 #21 ENSOARG00020022266 #21 ENSOARG00020022326 #23 ENSOARG00020022337 #23 ENSOARG00020022367 #21 ENSOARG00020022408 #23 ENSOARG00020022535 PUDP (ENSOARG00020022646) STS (ENSOARG00020022693) #26 ENSOARG00020022730 PNPLA4 (ENSOARG00020022744) #27 ANOS1 (ENSOARG00020022822) ENSOARG00020023008 #17 ENSOARG00020023111 ENSOARG00020023132 ENSOARG00020023143 ENSOARG00020023171 ENSOARG00020023199 MID1 (ENSOARG00020023438) Siberian musk deer MODERN SPECIES 1139 XG (ENSMMSG00000018993) GYG2 (ENSMMSG00000019089) ARSD (ENSMMSG00000019222) ARSL (ENSMMSG00000019269) ARSH (ENSMMSG00000019359) MXRA5 (ENSMMSG00000019412) PRKX (ENSMMSG00000019432) #20 ENSMMSG00000019496 ##23 ENSMMSG00000019635 ##23 ENSMMSG00000019691 ##23 ENSMMSG00000019737 ##23 ENSMMSG00000019770 ##23 ENSMMSG00000019844 #23 ENSMMSG00000019868 #23 ENSMMSG00000019885 #23 ENSMMSG00000019929 #23 ENSMMSG00000019937 #23 ENSMMSG00000019959 #23 ENSMMSG00000019977 Percora_a ANCESTRAL SPECIES ENSGT01050000244868.a.a.a.b.a.b.a.a.b.b.a.a.b #23 Siberian musk deer DUPLICATION Siberian musk deer MODERN SPECIES 1139 ENSMMSG00000018927 CD99 (ENSMMSG00000018962) XG (ENSMMSG00000018993) GYG2 (ENSMMSG00000019089) ARSD (ENSMMSG00000019222) ARSL (ENSMMSG00000019269) ARSH (ENSMMSG00000019359) MXRA5 (ENSMMSG00000019412) PRKX (ENSMMSG00000019432) #20 ENSMMSG00000019496 ##23 ENSMMSG00000019635 ##23 ENSMMSG00000019691 ##23 ENSMMSG00000019737 ##23 ENSMMSG00000019770 ##23 ENSMMSG00000019844 #23 ENSMMSG00000019868 #23 ENSMMSG00000019885 #23 ENSMMSG00000019929 #23 ENSMMSG00000019937 #23 ENSMMSG00000019959 #23 ENSMMSG00000019977 Siberian musk deer MODERN SPECIES 1139 CD99 (ENSMMSG00000018962) XG (ENSMMSG00000018993) GYG2 (ENSMMSG00000019089) ARSD (ENSMMSG00000019222) ARSL (ENSMMSG00000019269) ARSH (ENSMMSG00000019359) MXRA5 (ENSMMSG00000019412) PRKX (ENSMMSG00000019432) #20 ENSMMSG00000019496 ##23 ENSMMSG00000019635 ##23 ENSMMSG00000019691 ##23 ENSMMSG00000019737 ##23 ENSMMSG00000019770 ##23 ENSMMSG00000019844 #23 ENSMMSG00000019868 #23 ENSMMSG00000019885 #23 ENSMMSG00000019929 #23 ENSMMSG00000019937 #23 ENSMMSG00000019959 #23 ENSMMSG00000019977 Percora_a ANCESTRAL SPECIES 22 ENSGT00940000162345 ENSGT00940000163186 ENSGT00940000154344.b ENSGT00510000049811 ENSGT00940000161628.d ENSGT00940000161140 ENSGT00940000163319 ENSGT00940000162925 ENSGT00940000159942.a ENSGT00940000159832 #20 ENSGT01050000244868.a.a.a.b.a.b.a.a.a.a.b.c.b ##23 ENSGT01050000244868.a.a.a.b.a.b.a.a.b.a.b #23 ENSGT01030000235420 #21 ENSGT01050000244868.a.a.a.b.a.b.a.a.b.a.a #23 ENSGT01050000244868.a.a.a.b.a.b.a.a.b.b.a.a.a #23 ENSGT01050000244868.a.a.a.b.a.b.a.a.b.b.a.b #23 ENSGT01050000244868.a.a.a.b.a.b.a.a.b.b.b #23 ENSGT00940000156607.a.a ENSGT00390000014753 ENSGT00940000161153 #26 ENSGT00940000162022 #27 ENSGT00440000033720.a ENSGT00940000153421.a.a.a.a.b #17 ENSGT00390000016722 ENSGT00940000155212 ENSGT00390000005717 #18 ENSGT00410000025556.a.b ENSGT00940000158265 ENSGT00940000155821 ENSGT00390000004175 ENSGT00940000153904.a Bovidae ANCESTRAL SPECIES 23 ENSGT00940000154344.b ENSGT00510000049811 ENSGT00940000161628.d ENSGT00940000161140 ENSGT00940000163319 ENSGT00940000162925 ENSGT00940000159942.a ENSGT00940000159832 #20 ENSGT01050000244868.a.a.a.b.a.b.a.a.a.a.b.c.b ##23 ENSGT01050000244868.a.a.a.b.a.b.a.a.a.a.b.c.a ##23 ENSGT01050000244868.a.a.a.b.a.b.a.a.a.a.a.a ##23 ENSGT01050000244868.a.a.a.b.a.b.a.a.a.a.a.b ##23 ENSGT01050000244868.a.a.a.b.a.b.a.a.b.a.b #23 ENSGT01050000244868.a.a.a.b.a.b.a.a.b.a.a #23 ENSGT01030000235420.b #21 ENSGT01050000244868.a.a.a.b.a.b.a.a.b.b.a.b #23 ENSGT01050000244868.a.a.a.b.a.b.a.a.b.b.b #23 ENSGT00940000156607.a.a ENSGT00390000014753 ENSGT00940000161153 #26 ENSGT00940000162022 #27 ENSGT00440000033720.a ENSGT00940000153421.a.a.a.a.b #17 ENSGT00390000016722 ENSGT00940000155212 ENSGT00940000163405.h ENSGT00390000005717 #18 ENSGT00410000025556.a.b ENSGT00940000158265 ENSGT00940000155821 ENSGT00390000004175 Bovinae ANCESTRAL SPECIES 32 ENSGT00940000154344.b ENSGT00510000049811 ENSGT00940000161628.d ENSGT00940000161140 ENSGT00940000163319 ENSGT00940000162925 ENSGT00940000159942.a ENSGT00940000159832 #20 ENSGT01050000244868.a.a.a.b.a.b.a.a.a.a.b.c.b ##23 ENSGT01050000244868.a.a.a.b.a.b.a.a.a.a.b.c.a ##23 ENSGT01050000244868.a.a.a.b.a.b.a.a.a.a.a.a ##23 ENSGT01050000244868.a.a.a.b.a.b.a.a.a.a.a.b ##23 ENSGT01050000244868.a.a.a.b.a.b.a.a.b.a.b #23 ENSGT01050000244868.a.a.a.b.a.b.a.a.b.a.a #23 ENSGT01030000235420.b #21 ENSGT01050000244868.a.a.a.b.a.b.a.a.b.b.a.b #23 ENSGT01050000244868.a.a.a.b.a.b.a.a.b.b.b #23 ENSGT00940000156607.a.a ENSGT00390000014753 ENSGT00940000161153 #26 ENSGT00940000162022 #27 ENSGT00440000033720.a ENSGT00940000153421.a.a.a.a.b #17 ENSGT00390000016722 ENSGT00940000155212 ENSGT00960000190178 ENSGT00410000025556.a.b ENSGT00940000158265 ENSGT00940000155821 ENSGT00390000004175 ENSGT00940000153904.a Bos ANCESTRAL SPECIES 32 ENSGT00510000049811 ENSGT00940000161628.d ENSGT00940000161140 ENSGT00940000163319 ENSGT00940000162925 ENSGT00940000159942.a ENSGT00940000159832 #20 ENSGT01050000244868.a.a.a.b.a.b.a.a.a.a.b.c.b ##23 ENSGT01050000244868.a.a.a.b.a.b.a.a.a.a.b.c.a ##23 ENSGT01050000244868.a.a.a.b.a.b.a.a.a.a.a.a ##23 ENSGT01050000244868.a.a.a.b.a.b.a.a.a.a.a.b.d ##23 ENSGT01030000235420.a.a #21 ENSGT01050000244868.a.a.a.b.a.b.a.a.b.a.b #23 ENSGT01050000244868.a.a.a.b.a.b.a.a.b.a.a #23 ENSGT01030000235420.b #21 ENSGT01050000244868.a.a.a.b.a.b.a.a.b.b.a.b #23 ENSGT01050000244868.a.a.a.b.a.b.a.a.b.b.b #23 ENSGT00940000156607.a.a ENSGT00390000014753 ENSGT00940000161153 #26 ENSGT00940000162022 #27 ENSGT00440000033720.a ENSGT00940000153421.a.a.a.a.b #17 ENSGT00390000016722 ENSGT00940000155212 ENSGT00960000190178 ENSGT00980000198921.a.a ENSGT00410000025556.a.b ENSGT00940000158265 ENSGT00940000155821 ENSGT00390000012178.g.b.b.a.b.b Bos_a ANCESTRAL SPECIES 78 ENSGT00940000161561 ENSGT00940000162345 ENSGT00940000163186 ENSGT00940000154344.b ENSGT00510000049811 ENSGT00940000161628.d ENSGT00940000161140 ENSGT00940000163319 ENSGT00940000162925 ENSGT00940000159832 #20 ENSGT01050000244868.a.a.a.b.a.b.a.a.a.a.b.c.b ##23 ENSGT01050000244868.a.a.a.b.a.b.a.a.a.a.a.b.c ##23 ENSGT01050000244868.a.a.a.b.a.b.a.a.b.a.b #23 ENSGT01050000244868.a.a.a.b.a.b.a.a.b.a.a #23 ENSGT01030000235420.b #21 ENSGT01050000244868.a.a.a.b.a.b.a.a.b.b.a.b #23 ENSGT00940000156607.a.a ENSGT00390000014753 ENSGT00940000161153 #26 ENSGT00940000162022 #27 ENSGT00440000033720.a Domestic yak MODERN SPECIES 70 ASMTL (ENSBGRG00000007075) P2RY8 (ENSBGRG00000019508) AKAP17A (ENSBGRG00000019461) ASMT (ENSBGRG00000019382) DHRSX (ENSBGRG00000019175) CD99 (ENSBGRG00000019127) ENSBGRG00000019017 ENSBGRG00000018981 ENSBGRG00000018584 PRKX (ENSBGRG00000018435) #20 ENSBGRG00000018380 ##23 ENSBGRG00000018343 ##23 ENSBGRG00000018304 #23 ENSBGRG00000018225 #23 ENSBGRG00000018138 #21 ENSBGRG00000017967 #23 ENSBGRG00000017805 ENSBGRG00000017714 STS (ENSBGRG00000017387) #26 PNPLA4 (ENSBGRG00000017194) #27 ANOS1 (ENSBGRG00000016848) ENSBGRG00000016770 ENSBGRG00000016329 ENSBGRG00000016296 ENSBGRG00000016206 ENSBGRG00000016180 ENSBGRG00000016112 USP9Y (ENSBGRG00000015615) ENSBGRG00000015085 ENSBGRG00000014925 ENSBGRG00000014878 Wild yak MODERN SPECIES 738 ENSBMUG00000004251 #21 ENSBMUG00000004237 #23 ENSBMUG00000004208 #21 ENSBMUG00000004190 #23 ENSBMUG00000004179 #23 Bos_b ANCESTRAL SPECIES 39 ENSGT00940000154344.b ENSGT00510000049811 ENSGT00940000161628.d ENSGT00940000161140 ENSGT00940000163319 ENSGT00940000162925 ENSGT00940000159942.a ENSGT00940000159832 #20 ENSGT01050000244868.a.a.a.b.a.b.a.a.a.a.b.c.b ##23 ENSGT01050000244868.a.a.a.b.a.b.a.a.a.a.b.c.a ##23 ENSGT01050000244868.a.a.a.b.a.b.a.a.a.a.a.a ##23 ENSGT01050000244868.a.a.a.b.a.b.a.a.a.a.a.b.d ##23 ENSGT01050000244868.a.a.a.b.a.b.a.a.b.a.b #23 ENSGT01050000244868.a.a.a.b.a.b.a.a.b.a.a #23 ENSGT01030000235420.b #21 ENSGT01050000244868.a.a.a.b.a.b.a.a.b.b.a.b #23 ENSGT01050000244868.a.a.a.b.a.b.a.a.b.b.b #23 ENSGT00940000156607.a.a ENSGT00390000014753 ENSGT00940000161153 #26 ENSGT00940000162022 #27 ENSGT00440000033720.a ENSGT00940000153421.a.a.a.a.b #17 ENSGT00390000016722 ENSGT00940000155212 ENSGT00960000190178 ENSGT00980000198921.a.a ENSGT00410000025556.a.b ENSGT00940000158265 ENSGT00940000155821 ENSGT00390000012178.g.b.b.a.b.b Cow MODERN SPECIES 177 CD99 (ENSBTAG00000008114) XG (ENSBTAG00000046328) GYG2 (ENSBTAG00000013341) ARSD (ENSBTAG00000051224) ARSL (ENSBTAG00000014932) ARSH (ENSBTAG00000047161) MXRA5 (ENSBTAG00000022150) PRKX (ENSBTAG00000014367) #20 ENSBTAG00000016989 ##23 ENSBTAG00000025951 ##23 ENSBTAG00000025952 ##23 ENSBTAG00000052075 ##23 ENSBTAG00000049442 ##23 ENSBTAG00000053270 #23 ENSBTAG00000012491 #23 BDA20 (ENSBTAG00000016820) #23 MGC151921 (ENSBTAG00000046084) #23 ENSBTAG00000027841 PUDP (ENSBTAG00000000207) STS (ENSBTAG00000020789) #26 PNPLA4 (ENSBTAG00000015849) #27 ANOS1 (ENSBTAG00000001049) TBL1X (ENSBTAG00000018112) #17 GPR143 (ENSBTAG00000006472) ENSBTAG00000051024 SHROOM2 (ENSBTAG00000000211) ENSBTAG00000002158 ENSBTAG00000047068 ENSBTAG00000053828 CLDN34 (ENSBTAG00000046366) #18 ENSBTAG00000055193 Hybrid Bos Indicus MODERN SPECIES 315 XG (ENSBIXG00005011896) ENSBIXG00005005957 ARSD (ENSBIXG00005011859) ARSL (ENSBIXG00005006788) ARSH (ENSBIXG00005011774) MXRA5 (ENSBIXG00005011740) ENSBIXG00005011717 PRKX (ENSBIXG00005011708) #20 ENSBIXG00005011658 ##23 ENSBIXG00005001147 ##23 ENSBIXG00005011615 ##23 ENSBIXG00005001130 ##23 ENSBIXG00005000452 #21 ENSBIXG00005011496 #23 ENSBIXG00005011472 #23 ENSBIXG00005011448 #23 ENSBIXG00005011425 #21 ENSBIXG00005011409 #23 ENSBIXG00005001083 ENSBIXG00005011152 STS (ENSBIXG00005011080) #26 PNPLA4 (ENSBIXG00005011002) #27 ANOS1 (ENSBIXG00005010908) ENSBIXG00005010818 #17 GPR143 (ENSBIXG00005010743) SHROOM2 (ENSBIXG00005000636) ENSBIXG00005010661 ENSBIXG00005010650 ENSBIXG00005010631 ENSBIXG00005010460 WWC3 (ENSBIXG00005010425) American bison MODERN SPECIES 2612 ENSBBBG00000022455 #23 ENSBBBG00000022468 #23 Caprinae ANCESTRAL SPECIES 55 ENSGT00940000154344.b ENSGT00510000049811 ENSGT00940000161628.d ENSGT00940000161140 ENSGT00940000163319 ENSGT00940000162925 ENSGT00940000159942.a ENSGT00940000159832 #20 ENSGT01030000235420.a.b #21 ENSGT01050000244868.a.a.a.b.a.b.a.a.b.a.a #23 ENSGT01050000244868.a.a.a.b.a.b.a.a.b.b.a.a.a #23 ENSGT01050000244868.a.a.a.b.a.b.a.a.b.b.a.b #23 ENSGT01050000244868.a.a.a.b.a.b.a.a.b.b.b #23 ENSGT00940000156607.a.a ENSGT00390000014753 ENSGT00940000161153 #26 ENSGT00940000162022 #27 ENSGT00440000033720.a Goat MODERN SPECIES 29 ARSL (ENSCHIG00000020287) ARSH (ENSCHIG00000021448) MXRA5 (ENSCHIG00000018886) PRKX (ENSCHIG00000019219) #20 ENSCHIG00000017435 ENSCHIG00000013339 ENSCHIG00000020209 ##23 ENSCHIG00000003237 ENSCHIG00000016125 ##23 ENSCHIG00000024801 ##23 ENSCHIG00000015463 ENSCHIG00000024604 ENSCHIG00000016088 #23 ENSCHIG00000024935 #23 ENSCHIG00000014346 #23 ENSCHIG00000022295 #23 ENSCHIG00000018257 #23 ENSCHIG00000007638 PUDP (ENSCHIG00000022092) STS (ENSCHIG00000017504) #26 PNPLA4 (ENSCHIG00000013510) #27 ANOS1 (ENSCHIG00000022772) SHROOM2 (ENSCHIG00000020188) GPR143 (ENSCHIG00000016990) ENSCHIG00000008291 #17 MID1 (ENSCHIG00000012678) ENSCHIG00000006968 HCCS (ENSCHIG00000021236) ENSCHIG00000017454 ARHGAP6 (ENSCHIG00000022831) MSL3 (ENSCHIG00000008619) Siberian musk deer MODERN SPECIES 1139 GYG2 (ENSMMSG00000019089) ARSD (ENSMMSG00000019222) ARSL (ENSMMSG00000019269) ARSH (ENSMMSG00000019359) MXRA5 (ENSMMSG00000019412) PRKX (ENSMMSG00000019432) #20 ENSMMSG00000019496 ##23 ENSMMSG00000019635 ##23 ENSMMSG00000019691 ##23 ENSMMSG00000019737 ##23 ENSMMSG00000019770 ##23 ENSMMSG00000019844 #23 ENSMMSG00000019868 #23 ENSMMSG00000019885 #23 ENSMMSG00000019929 #23 ENSMMSG00000019937 #23 ENSMMSG00000019959 #23 ENSMMSG00000019977 Pecora ANCESTRAL SPECIES 34 ENSGT00940000161628.d ENSGT00940000161140 ENSGT00940000163319 ENSGT00940000162925 ENSGT00940000159942.a ENSGT00940000159832 #20 ENSGT01050000244868.a.a.a.b.a.b.a.a.a.a.b.c.b ##23 ENSGT00940000170830 ENSGT01050000244868.a.a.a.b.a.b.a.a.a.a.b.c.a ##23 ENSGT01050000244868.a.a.a.b.a.b.a.a.a.a.a.a ##23 ENSGT01050000244868.a.a.a.b.a.b.a.a.a.a.a.b ##23 ENSGT01050000244868.a.a.a.b.a.b.a.a.b.a.b #23 ENSGT01030000235420 #21 ENSGT01050000244868.a.a.a.b.a.b.a.a.b.a.a #23 ENSGT01050000244868.a.a.a.b.a.b.a.a.b.b.a #23 ENSGT01050000244868.a.a.a.b.a.b.a.a.b.b.b #23 ENSGT00940000156607.a.a ENSGT00390000014753 ENSGT00940000161153 #26 ENSGT00940000162022 #27 ENSGT00440000033720.a ENSGT00940000153421.a.a.a.a.b #17 ENSGT00390000016722 ENSGT00940000155212 ENSGT00390000005717 #18 ENSGT00410000025556.a.b ENSGT00940000158265 ENSGT00940000155821 ENSGT00390000004175 ENSGT00940000153904.a ENSGT00390000009151 Yarkand deer DUPLICATION Yarkand deer MODERN SPECIES 464 ENSCHYG00000020904 #23 Yarkand deer MODERN SPECIES 462 ENSCHYG00000019016 #23 Percora_a ANCESTRAL SPECIES 22 ENSGT00940000163186 ENSGT00940000154344.b ENSGT00510000049811 ENSGT00940000161628.d ENSGT00940000161140 ENSGT00940000163319 ENSGT00940000162925 ENSGT00940000159942.a ENSGT00940000159832 #20 ENSGT01050000244868.a.a.a.b.a.b.a.a.a.a.b.c.b ##23 ENSGT01050000244868.a.a.a.b.a.b.a.a.b.a.b #23 ENSGT01030000235420 #21 ENSGT01050000244868.a.a.a.b.a.b.a.a.b.a.a #23 ENSGT01050000244868.a.a.a.b.a.b.a.a.b.b.a.a.a #23 ENSGT01050000244868.a.a.a.b.a.b.a.a.b.b.a.b #23 ENSGT01050000244868.a.a.a.b.a.b.a.a.b.b.b #23 ENSGT00940000156607.a.a ENSGT00390000014753 ENSGT00940000161153 #26 ENSGT00940000162022 #27 ENSGT00440000033720.a ENSGT00940000153421.a.a.a.a.b #17 ENSGT00390000016722 ENSGT00940000155212 ENSGT00390000005717 #18 ENSGT00410000025556.a.b ENSGT00940000158265 ENSGT00940000155821 ENSGT00390000004175 ENSGT00940000153904.a ENSGT00390000009151.i Bovidae ANCESTRAL SPECIES 23 ENSGT00510000049811 ENSGT00940000161628.d ENSGT00940000161140 ENSGT00940000163319 ENSGT00940000162925 ENSGT00940000159942.a ENSGT00940000159832 #20 ENSGT01050000244868.a.a.a.b.a.b.a.a.a.a.b.c.b ##23 ENSGT01050000244868.a.a.a.b.a.b.a.a.a.a.b.c.a ##23 ENSGT01050000244868.a.a.a.b.a.b.a.a.a.a.a.a ##23 ENSGT01050000244868.a.a.a.b.a.b.a.a.a.a.a.b ##23 ENSGT01050000244868.a.a.a.b.a.b.a.a.b.a.b #23 ENSGT01050000244868.a.a.a.b.a.b.a.a.b.a.a #23 ENSGT01030000235420.b #21 ENSGT01050000244868.a.a.a.b.a.b.a.a.b.b.a.b #23 ENSGT01050000244868.a.a.a.b.a.b.a.a.b.b.b #23 ENSGT00940000156607.a.a ENSGT00390000014753 ENSGT00940000161153 #26 ENSGT00940000162022 #27 ENSGT00440000033720.a ENSGT00940000153421.a.a.a.a.b #17 ENSGT00390000016722 ENSGT00940000155212 ENSGT00940000163405.h ENSGT00390000005717 #18 ENSGT00410000025556.a.b ENSGT00940000158265 ENSGT00940000155821 ENSGT00390000004175 ENSGT00940000153904.a Caprinae ANCESTRAL SPECIES 55 ENSGT00940000154344.b ENSGT00510000049811 ENSGT00940000161628.d ENSGT00940000161140 ENSGT00940000163319 ENSGT00940000162925 ENSGT00940000159942.a ENSGT00940000159832 #20 ENSGT01030000235420.a.b #21 ENSGT01050000244868.a.a.a.b.a.b.a.a.b.a.a #23 ENSGT01050000244868.a.a.a.b.a.b.a.a.b.b.a.a.a #23 ENSGT01050000244868.a.a.a.b.a.b.a.a.b.b.a.b #23 ENSGT01050000244868.a.a.a.b.a.b.a.a.b.b.b #23 ENSGT00940000156607.a.a ENSGT00390000014753 ENSGT00940000161153 #26 ENSGT00940000162022 #27 ENSGT00440000033720.a Rambouillet Sheep MODERN SPECIES 205 ASMT (ENSOARG00020021300) AKAP17A (ENSOARG00020021337) CRLF2 (ENSOARG00020021524) ARSH (ENSOARG00020021899) ENSOARG00020022007 ENSOARG00020022017 ##23 ENSOARG00020022041 ENSOARG00020022057 ENSOARG00020022131 ##23 ENSOARG00020022180 ##23 ENSOARG00020022239 #21 ENSOARG00020022266 #21 ENSOARG00020022326 #23 ENSOARG00020022337 #23 ENSOARG00020022367 #21 ENSOARG00020022408 #23 ENSOARG00020022535 PUDP (ENSOARG00020022646) STS (ENSOARG00020022693) #26 ENSOARG00020022730 PNPLA4 (ENSOARG00020022744) #27 ANOS1 (ENSOARG00020022822) ENSOARG00020023008 #17 ENSOARG00020023111 ENSOARG00020023132 ENSOARG00020023143 ENSOARG00020023171 ENSOARG00020023199 MID1 (ENSOARG00020023438) CLCN4 (ENSOARG00020023510) WWC3 (ENSOARG00020023612) Goat MODERN SPECIES 29 ARSH (ENSCHIG00000021448) MXRA5 (ENSCHIG00000018886) PRKX (ENSCHIG00000019219) #20 ENSCHIG00000017435 ENSCHIG00000013339 ENSCHIG00000020209 ##23 ENSCHIG00000003237 ENSCHIG00000016125 ##23 ENSCHIG00000024801 ##23 ENSCHIG00000015463 ENSCHIG00000024604 ENSCHIG00000016088 #23 ENSCHIG00000024935 #23 ENSCHIG00000014346 #23 ENSCHIG00000022295 #23 ENSCHIG00000018257 #23 ENSCHIG00000007638 PUDP (ENSCHIG00000022092) STS (ENSCHIG00000017504) #26 PNPLA4 (ENSCHIG00000013510) #27 ANOS1 (ENSCHIG00000022772) SHROOM2 (ENSCHIG00000020188) GPR143 (ENSCHIG00000016990) ENSCHIG00000008291 #17 MID1 (ENSCHIG00000012678) ENSCHIG00000006968 HCCS (ENSCHIG00000021236) ENSCHIG00000017454 ARHGAP6 (ENSCHIG00000022831) MSL3 (ENSCHIG00000008619) FRMPD4 (ENSCHIG00000015208) Bovinae ANCESTRAL SPECIES 32 ENSGT00510000049811 ENSGT00940000161628.d ENSGT00940000161140 ENSGT00940000163319 ENSGT00940000162925 ENSGT00940000159942.a ENSGT00940000159832 #20 ENSGT01050000244868.a.a.a.b.a.b.a.a.a.a.b.c.b ##23 ENSGT01050000244868.a.a.a.b.a.b.a.a.a.a.b.c.a ##23 ENSGT01050000244868.a.a.a.b.a.b.a.a.a.a.a.a ##23 ENSGT01050000244868.a.a.a.b.a.b.a.a.a.a.a.b ##23 ENSGT01050000244868.a.a.a.b.a.b.a.a.b.a.b #23 ENSGT01050000244868.a.a.a.b.a.b.a.a.b.a.a #23 ENSGT01030000235420.b #21 ENSGT01050000244868.a.a.a.b.a.b.a.a.b.b.a.b #23 ENSGT01050000244868.a.a.a.b.a.b.a.a.b.b.b #23 ENSGT00940000156607.a.a ENSGT00390000014753 ENSGT00940000161153 #26 ENSGT00940000162022 #27 ENSGT00440000033720.a ENSGT00940000153421.a.a.a.a.b #17 ENSGT00390000016722 ENSGT00940000155212 ENSGT00960000190178 ENSGT00410000025556.a.b ENSGT00940000158265 ENSGT00940000155821 ENSGT00390000004175 ENSGT00940000153904.a ENSGT00390000009151.i Bos ANCESTRAL SPECIES 32 ENSGT00940000161628.d ENSGT00940000161140 ENSGT00940000163319 ENSGT00940000162925 ENSGT00940000159942.a ENSGT00940000159832 #20 ENSGT01050000244868.a.a.a.b.a.b.a.a.a.a.b.c.b ##23 ENSGT01050000244868.a.a.a.b.a.b.a.a.a.a.b.c.a ##23 ENSGT01050000244868.a.a.a.b.a.b.a.a.a.a.a.a ##23 ENSGT01050000244868.a.a.a.b.a.b.a.a.a.a.a.b.d ##23 ENSGT01030000235420.a.a #21 ENSGT01050000244868.a.a.a.b.a.b.a.a.b.a.b #23 ENSGT01050000244868.a.a.a.b.a.b.a.a.b.a.a #23 ENSGT01030000235420.b #21 ENSGT01050000244868.a.a.a.b.a.b.a.a.b.b.a.b #23 ENSGT01050000244868.a.a.a.b.a.b.a.a.b.b.b #23 ENSGT00940000156607.a.a ENSGT00390000014753 ENSGT00940000161153 #26 ENSGT00940000162022 #27 ENSGT00440000033720.a ENSGT00940000153421.a.a.a.a.b #17 ENSGT00390000016722 ENSGT00940000155212 ENSGT00960000190178 ENSGT00980000198921.a.a ENSGT00410000025556.a.b ENSGT00940000158265 ENSGT00940000155821 ENSGT00390000012178.g.b.b.a.b.b ENSGT00390000004175 Bos_b ANCESTRAL SPECIES 39 ENSGT00510000049811 ENSGT00940000161628.d ENSGT00940000161140 ENSGT00940000163319 ENSGT00940000162925 ENSGT00940000159942.a ENSGT00940000159832 #20 ENSGT01050000244868.a.a.a.b.a.b.a.a.a.a.b.c.b ##23 ENSGT01050000244868.a.a.a.b.a.b.a.a.a.a.b.c.a ##23 ENSGT01050000244868.a.a.a.b.a.b.a.a.a.a.a.a ##23 ENSGT01050000244868.a.a.a.b.a.b.a.a.a.a.a.b.d ##23 ENSGT01050000244868.a.a.a.b.a.b.a.a.b.a.b #23 ENSGT01050000244868.a.a.a.b.a.b.a.a.b.a.a #23 ENSGT01030000235420.b #21 ENSGT01050000244868.a.a.a.b.a.b.a.a.b.b.a.b #23 ENSGT01050000244868.a.a.a.b.a.b.a.a.b.b.b #23 ENSGT00940000156607.a.a ENSGT00390000014753 ENSGT00940000161153 #26 ENSGT00940000162022 #27 ENSGT00440000033720.a ENSGT00940000153421.a.a.a.a.b #17 ENSGT00390000016722 ENSGT00940000155212 ENSGT00960000190178 ENSGT00980000198921.a.a ENSGT00410000025556.a.b ENSGT00940000158265 ENSGT00940000155821 ENSGT00390000012178.g.b.b.a.b.b ENSGT00390000004175 Hybrid Bos Indicus MODERN SPECIES 315 ARSD (ENSBIXG00005011859) ARSL (ENSBIXG00005006788) ARSH (ENSBIXG00005011774) MXRA5 (ENSBIXG00005011740) ENSBIXG00005011717 PRKX (ENSBIXG00005011708) #20 ENSBIXG00005011658 ##23 ENSBIXG00005001147 ##23 ENSBIXG00005011615 ##23 ENSBIXG00005001130 ##23 ENSBIXG00005000452 #21 ENSBIXG00005011496 #23 ENSBIXG00005011472 #23 ENSBIXG00005011448 #23 ENSBIXG00005011425 #21 ENSBIXG00005011409 #23 ENSBIXG00005001083 ENSBIXG00005011152 STS (ENSBIXG00005011080) #26 PNPLA4 (ENSBIXG00005011002) #27 ANOS1 (ENSBIXG00005010908) ENSBIXG00005010818 #17 GPR143 (ENSBIXG00005010743) SHROOM2 (ENSBIXG00005000636) ENSBIXG00005010661 ENSBIXG00005010650 ENSBIXG00005010631 ENSBIXG00005010460 WWC3 (ENSBIXG00005010425) CLCN4 (ENSBIXG00005010373) MID1 (ENSBIXG00005010309) Cow MODERN SPECIES 177 XG (ENSBTAG00000046328) GYG2 (ENSBTAG00000013341) ARSD (ENSBTAG00000051224) ARSL (ENSBTAG00000014932) ARSH (ENSBTAG00000047161) MXRA5 (ENSBTAG00000022150) PRKX (ENSBTAG00000014367) #20 ENSBTAG00000016989 ##23 ENSBTAG00000025951 ##23 ENSBTAG00000025952 ##23 ENSBTAG00000052075 ##23 ENSBTAG00000049442 ##23 ENSBTAG00000053270 #23 ENSBTAG00000012491 #23 BDA20 (ENSBTAG00000016820) #23 MGC151921 (ENSBTAG00000046084) #23 ENSBTAG00000027841 PUDP (ENSBTAG00000000207) STS (ENSBTAG00000020789) #26 PNPLA4 (ENSBTAG00000015849) #27 ANOS1 (ENSBTAG00000001049) TBL1X (ENSBTAG00000018112) #17 GPR143 (ENSBTAG00000006472) ENSBTAG00000051024 SHROOM2 (ENSBTAG00000000211) ENSBTAG00000002158 ENSBTAG00000047068 ENSBTAG00000053828 CLDN34 (ENSBTAG00000046366) #18 ENSBTAG00000055193 ENSBTAG00000009932 Bos_a ANCESTRAL SPECIES ENSGT01050000244868.a.a.a.b.a.b.a.a.b.b.b #23 Wild yak MODERN SPECIES 738 ENSBMUG00000004251 #21 ENSBMUG00000004237 #23 ENSBMUG00000004208 #21 ENSBMUG00000004190 #23 ENSBMUG00000004179 #23 American bison MODERN SPECIES 2612 ENSBBBG00000022455 #23 ENSBBBG00000022468 #23 Siberian musk deer MODERN SPECIES 1139 ARSD (ENSMMSG00000019222) ARSL (ENSMMSG00000019269) ARSH (ENSMMSG00000019359) MXRA5 (ENSMMSG00000019412) PRKX (ENSMMSG00000019432) #20 ENSMMSG00000019496 ##23 ENSMMSG00000019635 ##23 ENSMMSG00000019691 ##23 ENSMMSG00000019737 ##23 ENSMMSG00000019770 ##23 ENSMMSG00000019844 #23 ENSMMSG00000019868 #23 ENSMMSG00000019885 #23 ENSMMSG00000019929 #23 ENSMMSG00000019937 #23 ENSMMSG00000019959 #23 ENSMMSG00000019977 Laurasiatheria_b ANCESTRAL SPECIES 10 ENSGT00440000039314.a ENSGT00940000161561 ENSGT00940000162345 ENSGT00940000163186 ENSGT00940000164022 ENSGT00940000154344.b ENSGT00510000049811 ENSGT00940000161628 ENSGT00940000161140 ENSGT00940000163319 ENSGT00940000162925 ENSGT00940000163432 ENSGT00940000159942.a ENSGT00940000159832 #20 ENSGT01050000244868.a.a.a.b.a.b.a.a.a ##23 ENSGT01050000244868.a.a.a.b.a.b.a.a.b #23 ENSGT00940000156607.a.a ENSGT00390000014753 ENSGT00940000161153 #26 ENSGT00940000162022 #27 ENSGT00440000033720.a ENSGT00940000153421.a.a.a.a.b #17 ENSGT00390000016722 ENSGT00940000155212 ENSGT00390000005717 #18 ENSGT00520000056155 ENSGT00410000025556.a.b ENSGT00940000158265 ENSGT00940000155821 ENSGT00390000004175 ENSGT00940000153904.a Laurasiatheria_c ANCESTRAL SPECIES 10 ENSGT00940000161561 ENSGT00940000162345 ENSGT00940000163186 ENSGT00940000164022 ENSGT00940000154344.b ENSGT00510000049811 ENSGT00940000161628 ENSGT00940000161140 ENSGT00940000163319 ENSGT00940000162925 ENSGT00940000163432 ENSGT00940000159942.a ENSGT00940000159832 #20 ENSGT00940000170830 ENSGT01050000244868.a.a.a.b.a.b.a.a.a ##23 ENSGT01050000244868.a.a.a.b.a.b.a.a.b #23 ENSGT00940000156607.a.a ENSGT00390000014753 ENSGT00940000161153 #26 ENSGT00940000162022 #27 ENSGT00440000033720.a ENSGT00940000153421.a.a.a.a.b #17 ENSGT00390000016722 ENSGT00940000155212 ENSGT00390000005717 #18 ENSGT00520000056155 ENSGT00410000025556.a.b ENSGT00940000158265 ENSGT00940000155821 ENSGT00390000004175 ENSGT00940000153904.a Equus ANCESTRAL SPECIES 48 ENSGT00940000162345 ENSGT00940000163186 ENSGT00940000164022 ENSGT00940000154344.b ENSGT00510000049811 ENSGT00940000161628 ENSGT00940000161140 ENSGT00940000163319 ENSGT00940000162925 ENSGT00940000163432 ENSGT00940000159942.a ENSGT00940000159832 #20 ENSGT01050000244868.a.a.a.b.a.b.a.a.a.d ##23 ENSGT00940000170830 ENSGT01050000244868.a.a.a.b.a.b.a.a.a.c ##23 ENSGT01050000244868.a.a.a.b.a.b.a.a.b #23 ENSGT00940000156607.a.a ENSGT00390000014753 ENSGT00940000161153 #26 ENSGT00940000162022 #27 ENSGT00440000033720.a ENSGT00940000153421.a.a.a.a.b.a #17 ENSGT00390000016722 ENSGT00940000155212 ENSGT00390000005717 #18 ENSGT00520000056155 ENSGT00410000025556.a.b ENSGT00940000158265 ENSGT00940000155821 ENSGT00390000004175 ENSGT00940000153904.a Donkey MODERN SPECIES 24 ENSEASG00005029630 XG (ENSEASG00005018705) GYG2 (ENSEASG00005018708) ENSEASG00005026126 ENSEASG00005018709 ARSD (ENSEASG00005018712) ARSL (ENSEASG00005023698) ARSH (ENSEASG00005018718) ARSF (ENSEASG00005018721) MXRA5 (ENSEASG00005010581) PRKX (ENSEASG00005010584) #20 ENSEASG00005013063 ENSEASG00005004375 ##23 ENSEASG00005028581 ENSEASG00005004367 ##23 ENSEASG00005015472 #23 ENSEASG00005033693 PUDP (ENSEASG00005015403) STS (ENSEASG00005011374) #26 PNPLA4 (ENSEASG00005037321) #27 ANOS1 (ENSEASG00005015192) ENSEASG00005022688 #17 GPR143 (ENSEASG00005026627) ENSEASG00005038719 CLDN34 (ENSEASG00005022698) #18 ENSEASG00005022700 WWC3 (ENSEASG00005020725) ENSEASG00005020752 Horse MODERN SPECIES 480 CD99 (ENSECAG00000039059) XG (ENSECAG00000000026) GYG2 (ENSECAG00000005751) ARSL (ENSECAG00000010384) ARSD (ENSECAG00000009174) ARSH (ENSECAG00000012190) ARSF (ENSECAG00000015651) MXRA5 (ENSECAG00000017487) PRKX (ENSECAG00000000012) #20 ENSECAG00000000093 ENSECAG00000057758 ENSECAG00000044468 ENSECAG00000000182 ##23 ENSECAG00000032353 ENSECAG00000029340 ##23 ENSECAG00000000408 #23 ENSECAG00000000709 PUDP (ENSECAG00000009014) STS (ENSECAG00000009398) #26 PNPLA4 (ENSECAG00000013103) #27 ANOS1 (ENSECAG00000035101) ENSECAG00000015264 ENSECAG00000015324 #17 GPR143 (ENSECAG00000010648) SHROOM2 (ENSECAG00000012150) CLDN34 (ENSECAG00000005133) #18 ENSECAG00000005232 WWC3 (ENSECAG00000013186) CLCN4 (ENSECAG00000016806) MID1 (ENSECAG00000019648) HCCS (ENSECAG00000009436)